Query 007229
Match_columns 612
No_of_seqs 953 out of 2223
Neff 12.4
Searched_HMMs 29240
Date Mon Mar 25 20:29:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007229.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007229hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nr0_A Actin interacting prote 100.0 1.5E-88 5.3E-93 681.9 78.0 595 2-610 1-610 (611)
2 1pgu_A Actin interacting prote 100.0 1.5E-77 5.2E-82 609.2 70.1 579 1-612 1-615 (615)
3 2ymu_A WD-40 repeat protein; u 100.0 6.6E-76 2.2E-80 591.5 75.1 557 15-608 13-577 (577)
4 2ymu_A WD-40 repeat protein; u 100.0 1E-68 3.5E-73 539.2 71.0 525 50-610 7-538 (577)
5 1nr0_A Actin interacting prote 100.0 1.5E-68 5.2E-73 536.9 67.1 526 15-567 56-610 (611)
6 3sfz_A APAF-1, apoptotic pepti 100.0 2.9E-68 1E-72 582.6 60.7 568 16-610 613-1248(1249)
7 2oaj_A Protein SNI1; WD40 repe 100.0 2.2E-62 7.6E-67 508.3 65.1 580 16-611 15-783 (902)
8 3sfz_A APAF-1, apoptotic pepti 100.0 1.1E-62 3.8E-67 538.5 59.4 539 52-612 608-1208(1249)
9 1pgu_A Actin interacting prote 100.0 1.4E-61 4.6E-66 492.1 59.1 510 16-568 61-614 (615)
10 2oaj_A Protein SNI1; WD40 repe 100.0 1E-59 3.5E-64 488.3 64.1 511 55-611 13-732 (902)
11 3mkq_A Coatomer beta'-subunit; 100.0 1.4E-54 4.9E-59 454.7 53.6 477 2-608 1-502 (814)
12 3mkq_A Coatomer beta'-subunit; 100.0 6.1E-51 2.1E-55 427.2 46.0 435 50-611 4-460 (814)
13 1got_B GT-beta; complex (GTP-b 100.0 1E-46 3.5E-51 350.3 44.5 292 49-522 45-340 (340)
14 1vyh_C Platelet-activating fac 100.0 1.1E-47 3.7E-52 365.9 38.8 290 139-610 100-410 (410)
15 3ow8_A WD repeat-containing pr 100.0 1.2E-47 4.2E-52 352.2 37.7 291 138-610 23-320 (321)
16 1vyh_C Platelet-activating fac 100.0 4.3E-47 1.5E-51 361.7 41.7 310 52-524 101-410 (410)
17 4g56_B MGC81050 protein; prote 100.0 1.6E-47 5.6E-52 357.0 36.0 323 22-570 9-345 (357)
18 3ow8_A WD repeat-containing pr 100.0 1.9E-46 6.6E-51 344.2 39.8 293 50-524 23-320 (321)
19 2pbi_B Guanine nucleotide-bind 100.0 8.5E-46 2.9E-50 345.3 43.3 292 50-522 55-354 (354)
20 2ynn_A Coatomer subunit beta'; 100.0 6.1E-46 2.1E-50 339.1 38.8 295 138-568 4-302 (304)
21 3iz6_a 40S ribosomal protein R 100.0 4E-47 1.4E-51 358.6 31.6 316 38-528 45-378 (380)
22 1r5m_A SIR4-interacting protei 100.0 1.1E-45 3.8E-50 357.3 41.0 343 39-567 25-424 (425)
23 1got_B GT-beta; complex (GTP-b 100.0 3.2E-45 1.1E-49 340.2 40.7 284 16-356 53-340 (340)
24 4gqb_B Methylosome protein 50; 100.0 7.4E-46 2.5E-50 342.3 36.2 293 12-362 24-334 (344)
25 2ynn_A Coatomer subunit beta'; 100.0 3.7E-45 1.3E-49 333.9 39.0 296 2-359 1-302 (304)
26 1r5m_A SIR4-interacting protei 100.0 3.5E-45 1.2E-49 353.9 40.0 354 130-610 28-424 (425)
27 3iz6_a 40S ribosomal protein R 100.0 3.3E-46 1.1E-50 352.3 31.2 317 169-611 45-375 (380)
28 3frx_A Guanine nucleotide-bind 100.0 4.2E-44 1.4E-48 329.1 41.7 207 50-264 8-225 (319)
29 1gxr_A ESG1, transducin-like e 100.0 2.4E-44 8.1E-49 336.3 40.2 320 18-523 9-335 (337)
30 4gqb_B Methylosome protein 50; 100.0 1.5E-44 5.2E-49 333.5 37.9 300 42-528 17-334 (344)
31 1gxr_A ESG1, transducin-like e 100.0 2.8E-44 9.6E-49 335.8 40.1 322 58-567 8-336 (337)
32 4g56_B MGC81050 protein; prote 100.0 5.8E-45 2E-49 339.8 35.0 291 13-361 37-345 (357)
33 3fm0_A Protein CIAO1; WDR39,SG 100.0 3.8E-44 1.3E-48 333.4 39.9 306 180-611 5-335 (345)
34 3fm0_A Protein CIAO1; WDR39,SG 100.0 4.9E-44 1.7E-48 332.7 40.2 301 17-364 14-340 (345)
35 3frx_A Guanine nucleotide-bind 100.0 6.8E-44 2.3E-48 327.7 40.3 295 13-360 12-318 (319)
36 4ery_A WD repeat-containing pr 100.0 3.2E-43 1.1E-47 323.6 44.0 297 49-524 13-311 (312)
37 2pbi_B Guanine nucleotide-bind 100.0 1.7E-43 6E-48 329.7 41.6 286 15-356 61-354 (354)
38 2hes_X YDR267CP; beta-propelle 100.0 1.2E-43 4E-48 327.9 40.1 298 137-611 4-328 (330)
39 2xzm_R RACK1; ribosome, transl 100.0 2.3E-43 7.8E-48 328.4 40.6 304 138-611 12-340 (343)
40 2pm9_A Protein WEB1, protein t 100.0 3E-45 1E-49 352.9 28.2 333 58-568 11-414 (416)
41 2pm9_A Protein WEB1, protein t 100.0 6E-45 2.1E-49 350.8 29.5 344 147-612 12-415 (416)
42 1erj_A Transcriptional repress 100.0 1.1E-42 3.7E-47 329.9 43.1 310 83-568 42-389 (393)
43 3vl1_A 26S proteasome regulato 100.0 1E-43 3.4E-48 342.5 36.5 348 105-611 59-419 (420)
44 1erj_A Transcriptional repress 100.0 5.6E-43 1.9E-47 331.9 40.0 285 16-359 62-389 (393)
45 3vl1_A 26S proteasome regulato 100.0 3.2E-43 1.1E-47 338.9 37.6 282 20-360 58-366 (420)
46 2hes_X YDR267CP; beta-propelle 100.0 3.1E-42 1.1E-46 318.4 40.5 260 48-360 3-281 (330)
47 2xzm_R RACK1; ribosome, transl 100.0 5.7E-42 1.9E-46 319.0 40.7 298 13-360 16-341 (343)
48 4ery_A WD repeat-containing pr 100.0 1.6E-41 5.5E-46 312.3 41.3 285 15-358 20-311 (312)
49 2j04_B YDR362CP, TAU91; beta p 100.0 2.7E-43 9.4E-48 340.9 28.2 349 101-612 132-518 (524)
50 4aow_A Guanine nucleotide-bind 100.0 5.7E-41 2E-45 313.6 41.9 313 40-483 17-339 (340)
51 3v7d_B Cell division control p 100.0 1.7E-40 5.8E-45 324.0 45.8 346 139-610 113-462 (464)
52 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.9E-40 6.4E-45 321.3 44.2 328 48-526 107-443 (445)
53 3gre_A Serine/threonine-protei 100.0 7.8E-42 2.7E-46 330.7 34.3 372 24-522 33-437 (437)
54 2j04_B YDR362CP, TAU91; beta p 100.0 9.1E-43 3.1E-47 337.2 27.0 341 18-568 133-517 (524)
55 3zwl_B Eukaryotic translation 100.0 1.1E-40 3.9E-45 315.6 40.5 302 139-611 24-346 (369)
56 1k32_A Tricorn protease; prote 100.0 2E-39 6.7E-44 345.8 54.8 525 18-612 14-638 (1045)
57 4aow_A Guanine nucleotide-bind 100.0 4.7E-40 1.6E-44 307.4 41.5 297 14-361 34-339 (340)
58 3ei3_B DNA damage-binding prot 100.0 5.6E-41 1.9E-45 318.6 35.0 311 43-525 57-382 (383)
59 3v7d_B Cell division control p 100.0 1.6E-39 5.4E-44 317.1 45.5 324 50-566 112-461 (464)
60 1k8k_C P40, ARP2/3 complex 41 100.0 1.4E-40 4.9E-45 315.1 36.5 316 17-362 7-364 (372)
61 4h5i_A Guanine nucleotide-exch 100.0 3.7E-41 1.3E-45 314.9 31.7 297 59-568 14-343 (365)
62 2j04_A TAU60, YPL007P, hypothe 100.0 2.1E-42 7E-47 323.7 22.7 321 57-557 13-350 (588)
63 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.2E-39 4.3E-44 315.5 42.9 322 94-568 110-442 (445)
64 1sq9_A Antiviral protein SKI8; 100.0 1.6E-40 5.4E-45 317.7 35.5 300 140-612 9-396 (397)
65 3dm0_A Maltose-binding peripla 100.0 3.9E-40 1.3E-44 336.8 40.3 292 140-611 375-693 (694)
66 1k8k_C P40, ARP2/3 complex 41 100.0 4.4E-40 1.5E-44 311.8 35.3 294 143-611 4-361 (372)
67 3i2n_A WD repeat-containing pr 100.0 9.2E-40 3.1E-44 307.8 36.5 298 141-568 12-353 (357)
68 3zwl_B Eukaryotic translation 100.0 4.2E-39 1.5E-43 304.8 40.7 301 15-362 29-349 (369)
69 3dwl_C Actin-related protein 2 100.0 3.2E-41 1.1E-45 319.8 26.1 322 18-357 11-377 (377)
70 3i2n_A WD repeat-containing pr 100.0 9.8E-40 3.4E-44 307.6 35.1 204 53-264 12-241 (357)
71 3gre_A Serine/threonine-protei 100.0 2.2E-40 7.4E-45 320.6 31.2 323 154-608 34-437 (437)
72 3dm0_A Maltose-binding peripla 100.0 3E-39 1E-43 330.2 40.7 303 15-358 379-692 (694)
73 3ei3_B DNA damage-binding prot 100.0 2.4E-39 8.1E-44 307.4 36.9 298 135-568 61-382 (383)
74 4h5i_A Guanine nucleotide-exch 100.0 9.8E-40 3.3E-44 305.3 32.8 295 20-527 16-345 (365)
75 4aez_A CDC20, WD repeat-contai 100.0 4.1E-39 1.4E-43 306.9 37.7 304 55-543 87-398 (401)
76 3odt_A Protein DOA1; ubiquitin 100.0 4E-39 1.4E-43 297.4 36.4 290 136-568 7-296 (313)
77 2j04_A TAU60, YPL007P, hypothe 100.0 3E-41 1E-45 315.8 21.8 262 16-358 13-296 (588)
78 4e54_B DNA damage-binding prot 100.0 4.1E-40 1.4E-44 317.1 29.5 298 139-568 111-430 (435)
79 2pm7_B Protein transport prote 100.0 4E-39 1.4E-43 292.9 34.2 246 15-264 6-283 (297)
80 3odt_A Protein DOA1; ubiquitin 100.0 1.9E-38 6.6E-43 292.7 39.0 289 49-529 8-300 (313)
81 3k26_A Polycomb protein EED; W 100.0 4.6E-39 1.6E-43 304.2 34.6 307 53-525 12-366 (366)
82 1sq9_A Antiviral protein SKI8; 100.0 1.3E-38 4.3E-43 304.5 35.7 308 14-360 12-396 (397)
83 3dwl_C Actin-related protein 2 100.0 4.7E-40 1.6E-44 311.8 25.4 202 55-264 7-234 (377)
84 4a11_B DNA excision repair pro 100.0 7.2E-39 2.5E-43 307.7 33.0 359 129-610 25-404 (408)
85 4e54_B DNA damage-binding prot 100.0 2.5E-39 8.4E-44 311.6 29.0 287 17-362 118-433 (435)
86 4a11_B DNA excision repair pro 100.0 2.1E-38 7.3E-43 304.4 35.2 351 38-399 22-405 (408)
87 4aez_A CDC20, WD repeat-contai 100.0 1.7E-37 5.7E-42 295.8 40.5 285 20-365 95-386 (401)
88 3k26_A Polycomb protein EED; W 100.0 1.5E-38 5E-43 300.7 31.4 287 15-358 15-365 (366)
89 4gga_A P55CDC, cell division c 100.0 2.2E-37 7.6E-42 296.7 39.2 282 20-364 107-400 (420)
90 3bg1_A Protein SEC13 homolog; 100.0 1.4E-38 4.9E-43 291.9 27.7 247 11-264 6-291 (316)
91 1k32_A Tricorn protease; prote 100.0 1.2E-36 4E-41 324.5 46.6 519 16-568 50-637 (1045)
92 4gga_A P55CDC, cell division c 100.0 5.3E-37 1.8E-41 294.1 37.5 298 149-586 107-411 (420)
93 4ggc_A P55CDC, cell division c 100.0 1.6E-36 5.5E-41 280.5 38.2 277 21-360 28-316 (318)
94 2pm7_B Protein transport prote 100.0 2.1E-36 7.1E-41 275.0 35.1 254 53-359 3-285 (297)
95 3dw8_B Serine/threonine-protei 100.0 9.8E-37 3.4E-41 296.3 34.3 199 57-264 26-313 (447)
96 3mmy_A MRNA export factor; mRN 100.0 1.6E-36 5.3E-41 287.1 33.9 295 135-567 27-345 (368)
97 1yfq_A Cell cycle arrest prote 100.0 9E-37 3.1E-41 285.3 31.6 285 142-603 6-315 (342)
98 3bg1_A Protein SEC13 homolog; 100.0 8.3E-37 2.8E-41 280.2 28.4 251 54-358 8-292 (316)
99 4ggc_A P55CDC, cell division c 100.0 1.4E-35 4.9E-40 274.1 36.7 283 193-568 28-315 (318)
100 3dw8_B Serine/threonine-protei 100.0 4.2E-36 1.4E-40 291.9 34.7 314 15-357 25-444 (447)
101 1p22_A F-BOX/WD-repeat protein 100.0 7.8E-36 2.7E-40 287.6 35.4 285 17-365 132-420 (435)
102 1yfq_A Cell cycle arrest prote 100.0 1.2E-35 4E-40 277.7 34.8 277 14-356 7-321 (342)
103 3mmy_A MRNA export factor; mRN 100.0 1.9E-35 6.5E-40 279.6 35.0 313 43-524 23-345 (368)
104 3f3f_A Nucleoporin SEH1; struc 100.0 2.2E-35 7.5E-40 277.3 34.6 253 15-278 8-345 (351)
105 1p22_A F-BOX/WD-repeat protein 100.0 4.4E-35 1.5E-39 282.3 35.1 277 55-402 129-417 (435)
106 3jrp_A Fusion protein of prote 100.0 2.7E-35 9.3E-40 279.8 32.6 263 137-528 1-290 (379)
107 2aq5_A Coronin-1A; WD40 repeat 100.0 1.9E-35 6.5E-40 282.1 31.4 283 150-611 37-342 (402)
108 3jrp_A Fusion protein of prote 100.0 2.8E-35 9.5E-40 279.7 32.4 246 15-264 8-285 (379)
109 2vdu_B TRNA (guanine-N(7)-)-me 100.0 2E-34 6.8E-39 278.9 37.8 240 19-264 5-337 (450)
110 3vu4_A KMHSV2; beta-propeller 100.0 8.1E-35 2.8E-39 271.3 33.3 292 174-611 3-336 (355)
111 3f3f_A Nucleoporin SEH1; struc 100.0 9.1E-35 3.1E-39 273.1 33.2 303 51-364 3-342 (351)
112 2aq5_A Coronin-1A; WD40 repeat 100.0 3.9E-35 1.3E-39 279.9 31.0 288 20-363 36-346 (402)
113 1l0q_A Surface layer protein; 100.0 2.5E-33 8.6E-38 267.0 42.9 230 32-276 4-239 (391)
114 3bws_A Protein LP49; two-domai 100.0 7.2E-33 2.5E-37 267.7 44.1 357 57-611 25-432 (433)
115 2vdu_B TRNA (guanine-N(7)-)-me 100.0 2.7E-33 9.1E-38 271.0 38.0 357 59-568 4-391 (450)
116 3bws_A Protein LP49; two-domai 100.0 3E-32 1E-36 263.4 44.4 356 18-525 27-432 (433)
117 2xyi_A Probable histone-bindin 100.0 1.1E-33 3.7E-38 271.7 30.8 243 16-264 126-408 (430)
118 1l0q_A Surface layer protein; 100.0 3.5E-32 1.2E-36 259.0 40.4 306 161-611 3-342 (391)
119 2w18_A PALB2, fancn, partner a 100.0 2E-33 7E-38 246.3 28.8 298 20-523 41-355 (356)
120 3vu4_A KMHSV2; beta-propeller 100.0 1.9E-32 6.3E-37 255.4 36.4 285 15-316 16-337 (355)
121 4gq1_A NUP37; propeller, trans 100.0 1.2E-33 4E-38 267.5 26.7 285 146-524 88-388 (393)
122 2xyi_A Probable histone-bindin 100.0 6.7E-33 2.3E-37 266.1 30.8 266 53-361 122-412 (430)
123 2w18_A PALB2, fancn, partner a 100.0 2.7E-32 9.4E-37 239.2 31.0 276 162-567 56-356 (356)
124 3jro_A Fusion protein of prote 100.0 1.4E-33 4.7E-38 289.5 26.4 247 14-264 5-283 (753)
125 3jro_A Fusion protein of prote 100.0 2.8E-33 9.6E-38 287.2 27.0 260 52-361 2-287 (753)
126 3lrv_A PRE-mRNA-splicing facto 100.0 1E-32 3.4E-37 256.8 28.3 233 22-264 40-290 (343)
127 3lrv_A PRE-mRNA-splicing facto 100.0 1.3E-32 4.6E-37 255.9 27.8 245 197-570 43-294 (343)
128 1nir_A Nitrite reductase; hemo 100.0 1E-30 3.4E-35 255.6 38.6 331 66-580 144-524 (543)
129 1nir_A Nitrite reductase; hemo 100.0 8.1E-31 2.8E-35 256.3 37.4 329 154-612 144-515 (543)
130 4gq1_A NUP37; propeller, trans 100.0 3.9E-31 1.3E-35 250.2 31.3 270 188-568 87-389 (393)
131 2hqs_A Protein TOLB; TOLB, PAL 100.0 7.5E-30 2.6E-34 242.5 30.6 238 19-264 63-342 (415)
132 2ecf_A Dipeptidyl peptidase IV 100.0 1.2E-28 4E-33 255.1 36.2 327 59-568 36-459 (741)
133 2hqs_A Protein TOLB; TOLB, PAL 100.0 6.6E-29 2.3E-33 236.0 31.2 299 147-591 62-407 (415)
134 2ecf_A Dipeptidyl peptidase IV 100.0 1.3E-28 4.5E-33 254.7 34.5 235 18-264 36-365 (741)
135 1xfd_A DIP, dipeptidyl aminope 100.0 2.3E-28 7.7E-33 252.3 28.9 238 19-276 17-295 (723)
136 1xfd_A DIP, dipeptidyl aminope 100.0 4.3E-28 1.5E-32 250.2 27.9 359 60-598 17-427 (723)
137 2z3z_A Dipeptidyl aminopeptida 100.0 1.4E-26 4.9E-31 238.0 35.0 321 62-568 28-435 (706)
138 2z3z_A Dipeptidyl aminopeptida 100.0 2.1E-26 7.1E-31 236.7 35.2 231 21-264 28-340 (706)
139 3u4y_A Uncharacterized protein 100.0 3.1E-25 1.1E-29 205.8 35.4 240 24-273 3-255 (331)
140 1ri6_A Putative isomerase YBHE 100.0 3.6E-25 1.2E-29 206.8 34.8 188 73-264 7-207 (343)
141 3u4y_A Uncharacterized protein 99.9 2.1E-24 7.1E-29 200.2 35.9 284 153-568 3-304 (331)
142 1ri6_A Putative isomerase YBHE 99.9 2.8E-24 9.4E-29 200.7 35.5 229 31-264 5-260 (343)
143 2ojh_A Uncharacterized protein 99.9 1.1E-25 3.7E-30 205.6 23.5 234 17-257 40-293 (297)
144 3vgz_A Uncharacterized protein 99.9 1E-23 3.6E-28 197.6 34.1 247 19-278 41-311 (353)
145 2ojh_A Uncharacterized protein 99.9 1.3E-24 4.6E-29 198.4 26.3 218 38-264 21-256 (297)
146 1pby_B Quinohemoprotein amine 99.9 1.8E-24 6.2E-29 201.4 26.6 300 115-580 2-320 (337)
147 1z68_A Fibroblast activation p 99.9 9.9E-25 3.4E-29 224.6 26.7 346 1-364 1-448 (719)
148 3vgz_A Uncharacterized protein 99.9 9.7E-23 3.3E-27 191.0 36.4 213 58-278 39-270 (353)
149 1pby_B Quinohemoprotein amine 99.9 6.8E-24 2.3E-28 197.5 28.3 277 162-612 3-311 (337)
150 3hfq_A Uncharacterized protein 99.9 5E-22 1.7E-26 185.3 36.9 185 79-264 14-216 (347)
151 4a5s_A Dipeptidyl peptidase 4 99.9 9.9E-23 3.4E-27 209.2 34.1 243 4-264 5-292 (740)
152 3o4h_A Acylamino-acid-releasin 99.9 3.1E-24 1E-28 214.9 22.3 249 1-264 4-274 (582)
153 3o4h_A Acylamino-acid-releasin 99.9 1.5E-23 5.1E-28 210.0 26.8 272 189-609 20-313 (582)
154 3scy_A Hypothetical bacterial 99.9 3.9E-21 1.3E-25 180.2 39.0 193 69-264 11-240 (361)
155 3hfq_A Uncharacterized protein 99.9 2.7E-22 9.2E-27 187.1 30.3 240 19-264 40-315 (347)
156 1z68_A Fibroblast activation p 99.9 3.7E-23 1.3E-27 212.9 25.9 367 152-611 20-443 (719)
157 4a5s_A Dipeptidyl peptidase 4 99.9 5.3E-22 1.8E-26 203.8 33.7 371 60-610 17-448 (740)
158 2oit_A Nucleoporin 214KDA; NH2 99.9 9.5E-22 3.2E-26 187.1 32.2 242 18-264 36-331 (434)
159 1jmx_B Amine dehydrogenase; ox 99.9 3.5E-22 1.2E-26 186.9 25.1 240 23-280 4-335 (349)
160 2oit_A Nucleoporin 214KDA; NH2 99.9 5.5E-21 1.9E-25 181.8 33.0 217 38-266 22-278 (434)
161 3scy_A Hypothetical bacterial 99.9 3.5E-20 1.2E-24 173.7 38.2 298 27-378 10-359 (361)
162 3pe7_A Oligogalacturonate lyas 99.9 1.9E-21 6.6E-26 184.6 29.6 212 43-264 14-271 (388)
163 1jmx_B Amine dehydrogenase; ox 99.9 1.7E-21 5.8E-26 182.2 28.4 161 107-278 4-183 (349)
164 3pe7_A Oligogalacturonate lyas 99.9 1.6E-21 5.5E-26 185.2 27.6 164 85-256 14-209 (388)
165 1jof_A Carboxy-CIS,CIS-muconat 99.9 3.6E-21 1.2E-25 180.2 28.1 243 19-264 40-339 (365)
166 3c5m_A Oligogalacturonate lyas 99.9 1.5E-21 5.1E-26 186.1 22.5 181 42-255 13-208 (396)
167 2oiz_A Aromatic amine dehydrog 99.9 6E-20 2E-24 170.5 30.8 294 168-550 29-360 (361)
168 3fvz_A Peptidyl-glycine alpha- 99.9 1.7E-19 5.9E-24 165.8 31.0 250 9-264 15-320 (329)
169 2oiz_A Aromatic amine dehydrog 99.9 2.2E-19 7.4E-24 166.8 31.8 189 28-223 13-232 (361)
170 1jof_A Carboxy-CIS,CIS-muconat 99.9 2.6E-19 9E-24 167.5 32.5 221 39-264 14-289 (365)
171 3azo_A Aminopeptidase; POP fam 99.9 4E-20 1.4E-24 188.6 28.4 204 52-264 16-270 (662)
172 3azo_A Aminopeptidase; POP fam 99.9 3.6E-19 1.2E-23 181.5 31.1 241 17-264 22-321 (662)
173 1q7f_A NHL, brain tumor CG1071 99.8 1.5E-17 5.3E-22 150.1 34.7 235 17-264 28-278 (286)
174 3c5m_A Oligogalacturonate lyas 99.8 5E-19 1.7E-23 168.6 24.9 240 21-273 38-332 (396)
175 1qks_A Cytochrome CD1 nitrite 99.8 1.3E-16 4.4E-21 155.3 39.8 325 160-611 167-538 (567)
176 2gop_A Trilobed protease; beta 99.8 1.7E-17 5.7E-22 154.7 31.6 259 20-314 16-330 (347)
177 2gop_A Trilobed protease; beta 99.8 7.8E-18 2.7E-22 157.0 27.5 224 19-264 59-329 (347)
178 1qks_A Cytochrome CD1 nitrite 99.8 8.8E-16 3E-20 149.4 42.3 332 26-367 163-546 (567)
179 3fvz_A Peptidyl-glycine alpha- 99.8 9.2E-17 3.1E-21 147.6 28.6 244 59-359 23-322 (329)
180 4a2l_A BT_4663, two-component 99.8 5.6E-13 1.9E-17 138.2 59.9 521 18-605 87-654 (795)
181 3e5z_A Putative gluconolactona 99.8 1.2E-16 3.9E-21 145.0 28.5 234 19-264 28-284 (296)
182 2xdw_A Prolyl endopeptidase; a 99.8 7.8E-17 2.7E-21 164.9 30.2 244 20-272 126-416 (710)
183 1q7f_A NHL, brain tumor CG1071 99.8 6.8E-16 2.3E-20 139.3 31.0 153 452-611 122-280 (286)
184 2xdw_A Prolyl endopeptidase; a 99.8 6.6E-16 2.3E-20 158.0 34.3 232 27-264 80-364 (710)
185 4a2l_A BT_4663, two-component 99.8 3E-12 1E-16 132.7 61.1 518 18-610 42-613 (795)
186 3no2_A Uncharacterized protein 99.8 1.2E-15 4E-20 135.2 29.9 238 29-280 4-262 (276)
187 2dg1_A DRP35, lactonase; beta 99.8 1.6E-15 5.3E-20 140.4 32.2 236 19-257 45-301 (333)
188 2bkl_A Prolyl endopeptidase; m 99.8 2.1E-16 7.3E-21 161.1 27.9 230 27-264 76-347 (695)
189 1rwi_B Serine/threonine-protei 99.8 6.4E-16 2.2E-20 138.2 27.0 234 20-264 25-262 (270)
190 3dsm_A Uncharacterized protein 99.8 6.7E-15 2.3E-19 134.8 34.1 281 168-589 15-319 (328)
191 2dg1_A DRP35, lactonase; beta 99.8 2.2E-15 7.7E-20 139.3 30.5 283 19-314 6-315 (333)
192 2bkl_A Prolyl endopeptidase; m 99.7 9.3E-16 3.2E-20 156.4 30.1 145 110-257 75-248 (695)
193 2z2n_A Virginiamycin B lyase; 99.7 1.2E-13 4E-18 125.7 40.9 235 18-264 14-253 (299)
194 3sjl_D Methylamine dehydrogena 99.7 2.8E-15 9.4E-20 136.1 28.6 306 153-548 38-384 (386)
195 3e5z_A Putative gluconolactona 99.7 1.9E-15 6.5E-20 137.0 27.9 266 137-568 17-286 (296)
196 2z2n_A Virginiamycin B lyase; 99.7 2.2E-13 7.4E-18 123.9 39.2 284 143-611 10-295 (299)
197 3v9f_A Two-component system se 99.7 2E-10 6.9E-15 118.8 65.0 560 18-605 18-651 (781)
198 1pjx_A Dfpase, DIISOPROPYLFLUO 99.7 7.9E-15 2.7E-19 134.5 28.1 239 20-264 19-297 (314)
199 2mad_H Methylamine dehydrogena 99.7 2.4E-13 8.1E-18 126.0 37.5 278 25-365 27-356 (373)
200 3g4e_A Regucalcin; six bladed 99.7 7.9E-14 2.7E-18 126.0 32.3 226 22-255 16-261 (297)
201 3dsm_A Uncharacterized protein 99.7 1.9E-14 6.5E-19 131.9 28.1 243 20-280 45-311 (328)
202 1yr2_A Prolyl oligopeptidase; 99.7 5.9E-14 2E-18 144.1 33.6 231 27-264 115-391 (741)
203 2mad_H Methylamine dehydrogena 99.7 6.7E-13 2.3E-17 123.0 36.8 287 154-576 27-356 (373)
204 1yr2_A Prolyl oligopeptidase; 99.7 8E-15 2.7E-19 150.6 26.3 242 20-272 164-443 (741)
205 3no2_A Uncharacterized protein 99.7 2E-14 7E-19 127.2 25.4 194 69-280 3-205 (276)
206 3v9f_A Two-component system se 99.7 4.8E-10 1.7E-14 116.0 60.4 520 19-567 66-655 (781)
207 3c75_H MADH, methylamine dehyd 99.7 6.8E-14 2.3E-18 129.7 28.1 286 157-577 82-409 (426)
208 3sjl_D Methylamine dehydrogena 99.7 3E-13 1E-17 122.8 31.6 196 108-316 38-257 (386)
209 2ghs_A AGR_C_1268P; regucalcin 99.7 1.9E-13 6.6E-18 125.0 30.9 225 21-256 51-292 (326)
210 2qc5_A Streptogramin B lactona 99.6 8.7E-12 3E-16 113.3 38.7 282 144-610 16-299 (300)
211 3c75_H MADH, methylamine dehyd 99.6 2.5E-13 8.4E-18 125.9 27.9 278 27-365 81-408 (426)
212 2qc5_A Streptogramin B lactona 99.6 6.6E-12 2.3E-16 114.1 37.3 274 18-313 19-298 (300)
213 1rwi_B Serine/threonine-protei 99.6 2.8E-13 9.7E-18 120.9 27.1 240 61-362 25-267 (270)
214 3hrp_A Uncharacterized protein 99.6 4.5E-13 1.5E-17 126.1 29.3 238 19-264 131-408 (409)
215 3iuj_A Prolyl endopeptidase; h 99.6 1.7E-13 5.8E-18 139.2 24.9 240 17-264 127-403 (693)
216 1xip_A Nucleoporin NUP159; bet 99.6 1.2E-13 4.2E-18 126.0 20.2 175 18-209 37-232 (388)
217 1xip_A Nucleoporin NUP159; bet 99.6 2.2E-13 7.5E-18 124.4 19.4 177 61-254 39-232 (388)
218 3s94_A LRP-6, low-density lipo 99.5 2E-08 7E-13 99.2 54.7 527 30-608 9-548 (619)
219 1mda_H Methylamine dehydrogena 99.5 2.5E-12 8.5E-17 117.3 23.7 291 162-547 34-366 (368)
220 1mda_H Methylamine dehydrogena 99.5 9.5E-12 3.3E-16 113.5 25.4 263 40-367 47-354 (368)
221 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 2.7E-11 9.1E-16 110.9 28.6 245 324-611 14-299 (314)
222 2qe8_A Uncharacterized protein 99.5 1.2E-11 4E-16 114.2 25.4 275 191-564 17-317 (343)
223 3s94_A LRP-6, low-density lipo 99.5 8E-08 2.7E-12 95.0 53.7 493 18-568 39-551 (619)
224 3dr2_A Exported gluconolactona 99.5 8.1E-12 2.8E-16 113.3 23.5 224 20-257 46-298 (305)
225 3q7m_A Lipoprotein YFGL, BAMB; 99.5 6.5E-11 2.2E-15 111.2 30.0 301 162-565 55-375 (376)
226 3hrp_A Uncharacterized protein 99.5 1.1E-10 3.7E-15 109.9 31.4 202 60-273 131-357 (409)
227 3iuj_A Prolyl endopeptidase; h 99.5 9.4E-12 3.2E-16 126.5 25.4 199 57-264 126-357 (693)
228 3q7m_A Lipoprotein YFGL, BAMB; 99.5 8.5E-11 2.9E-15 110.4 29.7 304 70-396 52-375 (376)
229 3g4e_A Regucalcin; six bladed 99.5 5E-10 1.7E-14 101.0 33.2 211 55-278 8-237 (297)
230 3ei3_A DNA damage-binding prot 99.4 3.4E-07 1.2E-11 96.7 63.6 558 22-611 330-999 (1158)
231 2ece_A 462AA long hypothetical 99.4 4.3E-11 1.5E-15 109.1 24.4 228 25-254 88-399 (462)
232 2qe8_A Uncharacterized protein 99.4 2.2E-11 7.4E-16 112.4 21.8 240 19-262 17-317 (343)
233 2ece_A 462AA long hypothetical 99.4 1.3E-09 4.5E-14 99.5 31.6 100 154-254 88-206 (462)
234 4a0p_A LRP6, LRP-6, low-densit 99.4 3E-07 1E-11 91.0 65.4 482 30-568 6-549 (628)
235 3dr2_A Exported gluconolactona 99.4 3.2E-10 1.1E-14 102.7 26.8 231 50-306 35-298 (305)
236 1kb0_A Quinohemoprotein alcoho 99.4 9.9E-10 3.4E-14 110.4 32.2 195 71-278 77-354 (677)
237 2ghs_A AGR_C_1268P; regucalcin 99.4 7.2E-10 2.5E-14 101.3 27.3 185 19-212 90-293 (326)
238 1kb0_A Quinohemoprotein alcoho 99.4 4.7E-10 1.6E-14 112.7 28.1 333 202-597 77-536 (677)
239 3hxj_A Pyrrolo-quinoline quino 99.4 3.1E-11 1.1E-15 111.3 18.2 302 22-360 23-325 (330)
240 1yiq_A Quinohemoprotein alcoho 99.3 8.7E-10 3E-14 111.0 27.9 305 30-346 70-536 (689)
241 1yiq_A Quinohemoprotein alcoho 99.3 1.4E-09 4.9E-14 109.5 28.3 112 202-319 70-196 (689)
242 1npe_A Nidogen, entactin; glyc 99.3 1.3E-08 4.3E-13 90.2 29.4 237 30-279 1-247 (267)
243 2hz6_A Endoplasmic reticulum t 99.2 4.9E-12 1.7E-16 117.5 6.2 186 29-228 8-199 (369)
244 3hxj_A Pyrrolo-quinoline quino 99.2 2.1E-10 7.3E-15 105.7 17.2 301 151-527 23-326 (330)
245 1npe_A Nidogen, entactin; glyc 99.2 1.4E-08 4.9E-13 89.8 28.1 222 20-248 37-263 (267)
246 1fwx_A Nitrous oxide reductase 99.2 1.4E-09 4.9E-14 103.1 20.7 215 24-265 90-360 (595)
247 1fwx_A Nitrous oxide reductase 99.2 4.1E-09 1.4E-13 100.0 23.1 122 445-568 271-431 (595)
248 2hz6_A Endoplasmic reticulum t 99.1 1.6E-11 5.4E-16 114.1 4.3 188 70-278 8-200 (369)
249 4a0p_A LRP6, LRP-6, low-densit 99.1 1.2E-05 4.3E-10 79.5 62.6 511 73-608 8-546 (628)
250 3ei3_A DNA damage-binding prot 99.1 2.5E-05 8.4E-10 82.9 63.3 518 61-609 328-953 (1158)
251 2iwa_A Glutamine cyclotransfer 99.1 6.3E-08 2.2E-12 83.1 23.5 203 51-264 11-235 (266)
252 3ott_A Two-component system se 99.1 2.5E-05 8.6E-10 80.6 62.2 523 18-606 62-622 (758)
253 2iwa_A Glutamine cyclotransfer 99.1 1.4E-07 4.9E-12 80.9 24.3 195 19-222 21-238 (266)
254 3nol_A Glutamine cyclotransfer 99.0 1E-07 3.5E-12 80.6 21.4 201 52-264 34-252 (262)
255 2fp8_A Strictosidine synthase; 99.0 3.7E-07 1.3E-11 83.2 27.2 239 20-264 20-311 (322)
256 1kv9_A Type II quinohemoprotei 99.0 4E-07 1.4E-11 91.5 29.5 112 202-319 66-191 (668)
257 2xe4_A Oligopeptidase B; hydro 99.0 9.4E-08 3.2E-12 97.8 24.1 195 20-219 175-398 (751)
258 2p4o_A Hypothetical protein; p 99.0 1.1E-06 3.6E-11 79.4 28.6 226 19-257 32-279 (306)
259 1w6s_A Methanol dehydrogenase 99.0 1.7E-06 5.7E-11 84.9 31.7 114 202-319 62-195 (599)
260 3v64_C Agrin; beta propeller, 99.0 7.3E-06 2.5E-10 75.1 34.3 246 20-278 35-283 (349)
261 1kv9_A Type II quinohemoprotei 98.9 8.3E-07 2.8E-11 89.2 29.0 279 29-318 66-491 (668)
262 3v65_B Low-density lipoprotein 98.9 4.2E-06 1.4E-10 78.0 31.6 245 21-278 79-326 (386)
263 3nok_A Glutaminyl cyclase; bet 98.9 4E-07 1.4E-11 76.9 21.2 193 51-255 45-254 (268)
264 2ad6_A Methanol dehydrogenase 98.9 1.3E-06 4.3E-11 85.9 28.3 195 202-403 62-339 (571)
265 1ijq_A LDL receptor, low-densi 98.9 1.5E-05 5.3E-10 71.9 33.5 238 31-277 2-245 (316)
266 2ad6_A Methanol dehydrogenase 98.9 1.4E-06 4.9E-11 85.5 27.4 306 296-612 62-495 (571)
267 3qqz_A Putative uncharacterize 98.9 6.5E-06 2.2E-10 70.3 27.6 196 18-219 26-251 (255)
268 3nol_A Glutamine cyclotransfer 98.8 1.6E-06 5.5E-11 73.3 21.9 193 4-210 31-244 (262)
269 1w6s_A Methanol dehydrogenase 98.8 4.9E-06 1.7E-10 81.6 28.8 278 29-321 62-509 (599)
270 2xe4_A Oligopeptidase B; hydro 98.8 1.6E-06 5.4E-11 88.8 26.1 231 28-264 124-396 (751)
271 3mbr_X Glutamine cyclotransfer 98.8 3.9E-06 1.3E-10 70.4 23.5 202 51-264 11-231 (243)
272 2xbg_A YCF48-like protein; pho 98.8 7.6E-05 2.6E-09 67.7 35.2 227 18-259 35-272 (327)
273 1k3i_A Galactose oxidase precu 98.8 1.7E-06 5.9E-11 87.2 25.7 110 152-264 190-321 (656)
274 3sov_A LRP-6, low-density lipo 98.8 3E-05 1E-09 69.8 30.6 237 32-278 6-246 (318)
275 1k3i_A Galactose oxidase precu 98.8 4.4E-07 1.5E-11 91.5 20.9 70 195-264 190-272 (656)
276 1flg_A Protein (quinoprotein e 98.8 1.9E-05 6.5E-10 77.6 31.7 111 202-318 68-196 (582)
277 2fp8_A Strictosidine synthase; 98.8 3.7E-06 1.3E-10 76.6 24.6 239 329-611 20-313 (322)
278 3tc9_A Hypothetical hydrolase; 98.8 8.2E-06 2.8E-10 77.1 27.4 241 19-264 137-428 (430)
279 2p4o_A Hypothetical protein; p 98.7 2.8E-05 9.6E-10 70.1 29.3 112 191-314 32-146 (306)
280 3p5b_L Low density lipoprotein 98.7 0.00011 3.7E-09 68.8 33.7 240 30-278 83-328 (400)
281 3v64_C Agrin; beta propeller, 98.7 2.1E-05 7.3E-10 72.0 28.3 204 20-228 74-282 (349)
282 1flg_A Protein (quinoprotein e 98.7 1.4E-05 4.7E-10 78.6 28.3 115 246-365 68-199 (582)
283 3v65_B Low-density lipoprotein 98.7 1.4E-05 4.8E-10 74.4 27.0 205 19-228 116-325 (386)
284 3nok_A Glutaminyl cyclase; bet 98.7 1.9E-06 6.6E-11 72.8 18.4 183 148-347 55-254 (268)
285 3qqz_A Putative uncharacterize 98.7 1.9E-05 6.6E-10 67.4 24.6 201 55-263 22-250 (255)
286 4hw6_A Hypothetical protein, I 98.6 4.3E-05 1.5E-09 72.1 27.9 239 19-264 139-431 (433)
287 2xbg_A YCF48-like protein; pho 98.6 9.6E-05 3.3E-09 67.1 28.8 230 18-263 79-319 (327)
288 1ijq_A LDL receptor, low-densi 98.6 8.2E-05 2.8E-09 67.1 28.0 205 19-228 30-245 (316)
289 3mbr_X Glutamine cyclotransfer 98.6 3.3E-05 1.1E-09 64.8 23.1 164 104-280 22-189 (243)
290 3p5b_L Low density lipoprotein 98.6 0.00015 5.1E-09 67.8 30.2 208 18-228 111-327 (400)
291 3ott_A Two-component system se 98.6 0.0011 3.9E-08 68.3 59.9 518 18-610 21-585 (758)
292 3kya_A Putative phosphatase; s 98.5 0.00022 7.4E-09 67.3 28.8 240 20-264 140-473 (496)
293 3m0c_C LDL receptor, low-densi 98.5 0.00051 1.7E-08 69.7 32.9 237 31-277 396-639 (791)
294 3tc9_A Hypothetical hydrolase; 98.5 0.00017 5.7E-09 68.2 27.6 60 192-255 138-198 (430)
295 3sov_A LRP-6, low-density lipo 98.5 0.00021 7.2E-09 64.2 26.8 204 20-228 36-245 (318)
296 3a9g_A Putative uncharacterize 98.4 0.00073 2.5E-08 61.8 29.5 228 20-254 30-330 (354)
297 2ism_A Putative oxidoreductase 98.4 0.0002 6.7E-09 65.7 25.5 225 20-254 32-333 (352)
298 4hw6_A Hypothetical protein, I 98.3 0.001 3.4E-08 62.8 28.7 199 61-264 140-372 (433)
299 3amr_A 3-phytase; beta-propell 98.3 0.00049 1.7E-08 61.0 23.5 200 70-280 39-274 (355)
300 2xzh_A Clathrin heavy chain 1; 98.3 0.0016 5.5E-08 56.5 31.2 269 212-528 49-335 (365)
301 3m0c_C LDL receptor, low-densi 98.3 0.0012 4E-08 67.1 29.1 206 19-228 424-639 (791)
302 2g8s_A Glucose/sorbosone dehyd 98.2 0.0016 5.5E-08 59.6 27.1 241 20-264 19-350 (353)
303 1n7d_A LDL receptor, low-densi 98.2 1.2E-05 4E-10 81.1 13.8 239 32-279 379-623 (699)
304 3amr_A 3-phytase; beta-propell 98.2 0.0015 5.1E-08 58.0 25.1 199 23-229 30-272 (355)
305 2xzh_A Clathrin heavy chain 1; 98.2 0.0021 7.4E-08 55.8 31.1 236 23-264 71-330 (365)
306 3s25_A Hypothetical 7-bladed b 98.2 0.0011 3.7E-08 58.8 23.6 214 26-269 21-256 (302)
307 2p9w_A MAL S 1 allergenic prot 98.1 0.001 3.4E-08 58.5 21.9 152 23-180 17-216 (334)
308 3sre_A PON1, serum paraoxonase 98.1 0.0005 1.7E-08 62.0 20.4 197 22-220 53-297 (355)
309 1n7d_A LDL receptor, low-densi 98.1 2.1E-05 7.3E-10 79.2 12.8 205 19-228 406-621 (699)
310 3kya_A Putative phosphatase; s 98.1 0.0059 2E-07 57.7 28.0 66 192-257 140-214 (496)
311 3das_A Putative oxidoreductase 98.1 0.0054 1.8E-07 55.1 27.1 230 20-254 33-326 (347)
312 1bpo_A Protein (clathrin); cla 98.0 0.0069 2.4E-07 55.0 30.7 237 22-264 69-329 (494)
313 3sre_A PON1, serum paraoxonase 98.0 0.0071 2.4E-07 54.6 30.4 197 55-256 45-287 (355)
314 1bpo_A Protein (clathrin); cla 98.0 0.0076 2.6E-07 54.7 32.1 270 211-528 47-334 (494)
315 2vpj_A Kelch-like protein 12; 98.0 0.003 1E-07 56.5 24.1 146 461-611 112-278 (301)
316 3ii7_A Kelch-like protein 7; p 97.9 0.0074 2.5E-07 54.1 23.9 226 341-611 13-272 (306)
317 2xn4_A Kelch-like protein 2; s 97.8 0.0059 2E-07 54.7 22.4 147 461-612 108-277 (302)
318 1zgk_A Kelch-like ECH-associat 97.8 0.012 4E-07 52.8 23.0 146 461-611 121-287 (308)
319 2vpj_A Kelch-like protein 12; 97.7 0.024 8.1E-07 50.6 24.0 104 461-568 159-278 (301)
320 3ii7_A Kelch-like protein 7; p 97.7 0.03 1E-06 50.1 24.3 191 340-574 56-278 (306)
321 1zgk_A Kelch-like ECH-associat 97.6 0.031 1E-06 50.1 23.0 105 461-569 168-288 (308)
322 1cru_A Protein (soluble quinop 97.5 0.063 2.1E-06 50.8 32.1 104 20-123 28-164 (454)
323 3pbp_A Nucleoporin NUP82; beta 97.5 0.013 4.5E-07 53.2 18.7 143 458-605 28-206 (452)
324 2p9w_A MAL S 1 allergenic prot 97.5 0.052 1.8E-06 47.8 23.7 211 144-359 9-265 (334)
325 2xn4_A Kelch-like protein 2; s 97.4 0.011 3.7E-07 52.9 18.3 224 29-264 15-274 (302)
326 1tl2_A L10, protein (tachylect 97.3 0.0066 2.3E-07 49.5 13.3 144 452-603 42-202 (236)
327 3pbp_A Nucleoporin NUP82; beta 97.3 0.0058 2E-07 55.5 14.3 102 20-121 67-198 (452)
328 1tl2_A L10, protein (tachylect 97.3 0.014 4.9E-07 47.6 15.0 97 20-120 42-152 (236)
329 4asc_A Kelch repeat and BTB do 97.3 0.067 2.3E-06 48.0 21.8 146 461-611 98-277 (315)
330 2ism_A Putative oxidoreductase 97.2 0.11 3.9E-06 47.3 24.8 104 59-166 30-152 (352)
331 3s25_A Hypothetical 7-bladed b 97.2 0.1 3.5E-06 46.1 23.0 217 67-316 21-256 (302)
332 2woz_A Kelch repeat and BTB do 97.2 0.085 2.9E-06 47.4 21.4 146 461-611 109-287 (318)
333 1xi4_A Clathrin heavy chain; a 97.1 0.061 2.1E-06 57.1 21.1 268 211-527 47-333 (1630)
334 2uvk_A YJHT; unknown function, 97.1 0.039 1.3E-06 50.7 18.4 107 461-569 200-343 (357)
335 3a9g_A Putative uncharacterize 97.1 0.17 5.7E-06 46.2 22.0 187 19-208 73-329 (354)
336 1xi4_A Clathrin heavy chain; a 97.0 0.065 2.2E-06 56.9 20.3 235 23-264 70-329 (1630)
337 2uvk_A YJHT; unknown function, 96.9 0.067 2.3E-06 49.1 17.7 94 28-123 18-128 (357)
338 2zwa_A Leucine carboxyl methyl 96.5 0.24 8.3E-06 50.0 20.3 109 460-569 499-636 (695)
339 2wg3_C Hedgehog-interacting pr 96.5 0.59 2E-05 44.2 26.7 105 20-124 15-160 (463)
340 1cru_A Protein (soluble quinop 96.4 0.17 5.7E-06 47.9 17.3 105 452-556 28-162 (454)
341 3sbq_A Nitrous-oxide reductase 96.4 0.61 2.1E-05 44.2 19.7 191 28-221 140-408 (638)
342 3sbq_A Nitrous-oxide reductase 96.3 0.34 1.1E-05 45.9 17.8 222 38-265 79-407 (638)
343 2woz_A Kelch repeat and BTB do 96.3 0.55 1.9E-05 42.0 22.6 215 32-256 17-263 (318)
344 2zwa_A Leucine carboxyl methyl 96.3 0.57 2E-05 47.3 21.1 149 461-611 451-635 (695)
345 4asc_A Kelch repeat and BTB do 96.2 0.64 2.2E-05 41.5 26.3 182 73-264 7-219 (315)
346 2be1_A Serine/threonine-protei 95.8 0.1 3.5E-06 46.6 11.4 196 162-364 12-236 (339)
347 3qhy_B Beta-lactamase inhibito 95.7 0.97 3.3E-05 39.4 26.0 69 328-401 24-92 (282)
348 2be1_A Serine/threonine-protei 95.6 1.2 4.2E-05 39.8 17.9 116 248-367 11-138 (339)
349 2g8s_A Glucose/sorbosone dehyd 95.4 1.6 5.3E-05 39.7 28.5 60 60-120 18-86 (353)
350 4hvt_A Ritya.17583.B, post-pro 93.8 6.2 0.00021 39.7 21.7 234 22-264 132-428 (711)
351 3uc1_A DNA gyrase subunit A; D 93.4 4 0.00014 36.3 23.9 163 147-315 94-279 (327)
352 3das_A Putative oxidoreductase 93.4 4.2 0.00014 36.5 29.3 149 55-207 27-218 (347)
353 1zi0_A DNA gyrase subunit A; b 93.0 4.5 0.00015 35.7 24.4 238 69-315 1-277 (307)
354 3qhy_B Beta-lactamase inhibito 91.3 6.8 0.00023 34.1 28.2 243 289-596 26-268 (282)
355 4gq2_M Nucleoporin NUP120; bet 90.1 15 0.00053 38.5 18.0 38 192-229 237-274 (950)
356 3uc1_A DNA gyrase subunit A; D 89.9 10 0.00035 33.7 23.3 160 449-610 93-278 (327)
357 1zi0_A DNA gyrase subunit A; b 88.8 12 0.00041 33.0 25.6 159 449-609 93-275 (307)
358 3b7f_A Glycosyl hydrolase, BNR 88.5 15 0.00051 33.8 32.1 180 73-257 24-254 (394)
359 1wp5_A Topoisomerase IV; broke 88.5 13 0.00044 33.0 23.9 239 69-315 3-277 (323)
360 3l6v_A GYRA, DNA gyrase subuni 87.4 17 0.00057 33.1 25.4 238 67-314 3-315 (370)
361 3kci_A Probable E3 ubiquitin-p 87.2 18 0.00061 33.3 30.6 287 248-568 11-345 (389)
362 1wp5_A Topoisomerase IV; broke 87.1 16 0.00054 32.5 24.6 160 449-610 90-276 (323)
363 3no0_A DNA gyrase subunit A; D 87.0 14 0.00048 31.9 20.9 159 147-314 67-245 (276)
364 3zwu_A Alkaline phosphatase PH 86.0 3.2 0.00011 40.3 9.2 58 20-77 477-548 (592)
365 4a9v_A PHOX; hydrolase, beta-p 85.5 4.7 0.00016 38.7 9.7 59 19-77 476-548 (592)
366 1suu_A DNA gyrase subunit A; t 85.3 19 0.00065 31.8 27.5 118 449-568 98-231 (312)
367 4gq2_M Nucleoporin NUP120; bet 83.5 20 0.00069 37.7 14.5 35 60-94 236-270 (950)
368 3q6k_A 43.2 kDa salivary prote 81.2 32 0.0011 31.3 22.9 74 451-525 220-306 (381)
369 3b7f_A Glycosyl hydrolase, BNR 80.4 35 0.0012 31.3 33.9 212 32-253 24-296 (394)
370 3l6v_A GYRA, DNA gyrase subuni 77.9 41 0.0014 30.5 26.3 158 449-608 97-313 (370)
371 3no0_A DNA gyrase subunit A; D 77.7 34 0.0011 29.5 23.0 181 425-610 37-245 (276)
372 4d9s_A UVB-resistance protein 76.5 48 0.0016 30.6 33.2 283 288-609 17-355 (406)
373 3zwu_A Alkaline phosphatase PH 74.8 9.6 0.00033 37.1 8.2 59 497-555 478-548 (592)
374 1suu_A DNA gyrase subunit A; t 72.0 52 0.0018 29.0 27.7 193 68-265 5-230 (312)
375 4fhn_B Nucleoporin NUP120; pro 71.8 7.7 0.00026 41.9 7.5 35 60-94 238-272 (1139)
376 4a9v_A PHOX; hydrolase, beta-p 71.3 19 0.00063 34.8 8.9 60 496-556 477-549 (592)
377 3q6k_A 43.2 kDa salivary prote 71.2 61 0.0021 29.5 22.7 155 19-179 87-306 (381)
378 4fhn_B Nucleoporin NUP120; pro 71.0 10 0.00034 41.0 8.1 38 192-229 239-276 (1139)
379 3f7f_A Nucleoporin NUP120; nuc 69.7 25 0.00087 35.0 9.7 82 9-93 152-253 (729)
380 2wg3_C Hedgehog-interacting pr 67.4 84 0.0029 29.6 30.2 54 60-113 14-79 (463)
381 3f7f_A Nucleoporin NUP120; nuc 51.1 2E+02 0.007 28.8 16.6 36 238-279 224-259 (729)
382 2cn3_A Xyloglucanase, beta-1,4 49.6 2.2E+02 0.0077 28.8 45.5 191 60-253 23-261 (737)
383 3al9_A Plexin-A2; beta-propell 40.3 58 0.002 31.4 6.7 69 452-520 401-476 (539)
384 1q47_A Semaphorin 3A; beta pro 34.4 1E+02 0.0035 29.3 7.3 69 452-520 405-487 (495)
385 1zvt_A Topoisomerase IV subuni 26.6 2.9E+02 0.0099 23.3 18.7 114 453-568 35-163 (256)
386 3mez_B Mannose-specific lectin 24.4 1.9E+02 0.0065 20.4 7.5 26 541-568 59-84 (113)
387 4gz8_A Semaphorin-3A; multi-do 24.2 1.9E+02 0.0066 28.7 7.4 58 463-520 430-495 (667)
388 3kci_A Probable E3 ubiquitin-p 23.7 4.1E+02 0.014 24.0 33.5 203 192-401 106-347 (389)
389 3ol2_B Plexin-B1; beta-propell 23.1 2.1E+02 0.0072 27.4 7.2 69 452-521 388-462 (528)
390 1zvt_A Topoisomerase IV subuni 22.5 3.5E+02 0.012 22.8 16.0 142 464-610 4-162 (256)
391 3nvq_A Semaphorin-7A; beta-pro 22.2 2.1E+02 0.0072 27.9 7.1 59 463-521 381-445 (590)
392 4d9s_A UVB-resistance protein 21.3 4.7E+02 0.016 23.8 36.1 202 192-400 69-306 (406)
393 1olz_A Semaphorin 4D; developm 20.7 5E+02 0.017 25.9 9.6 68 453-520 399-477 (663)
394 3kxt_A Chromatin protein CREN7 20.5 1.4E+02 0.0049 17.6 3.4 31 3-33 15-46 (56)
No 1
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.5e-88 Score=681.88 Aligned_cols=595 Identities=32% Similarity=0.605 Sum_probs=516.3
Q ss_pred ce-eEeeeeeccCCCCCCCceeEEEEccCCCEEEEecCCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCc
Q 007229 2 AE-VHLSETYACAPSTERGRGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVS 80 (612)
Q Consensus 2 ~~-~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d 80 (612)
|+ +.++.+|++.|.++++.+.+++|||||++||+++++.|++|++.+++....+.+|...|++++|||||++||+|+.|
T Consensus 1 ~~~~~~~~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d 80 (611)
T 1nr0_A 1 MSEFSQTALFPSLPRTARGTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVH 80 (611)
T ss_dssp -CCCEEEEEECCCCCCCTTCCCCCEECTTSSEEEEEETTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred CCccccccEECCCCCcccCceeEEeeCCCCCEEEeCCCCEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCC
Confidence 55 89999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEeecCCCce-eeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCC
Q 007229 81 GSVRIWGTHNGFV-LKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTR 159 (612)
Q Consensus 81 ~~i~iwd~~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 159 (612)
++|+|||+.+++. +...+.+|.+.|.+++|+||+++|++++.+... ...++.|+.++....+.+|...|.+++|+|++
T Consensus 81 ~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~-~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~ 159 (611)
T 1nr0_A 81 GNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRER-FGHVFLFDTGTSNGNLTGQARAMNSVDFKPSR 159 (611)
T ss_dssp SEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSC-SEEEEETTTCCBCBCCCCCSSCEEEEEECSSS
T ss_pred CCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCc-eeEEEEeeCCCCcceecCCCCCceEEEECCCC
Confidence 9999999976543 455788899999999999999999999876432 45799999999999999999999999999999
Q ss_pred CEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeec----cCCcc
Q 007229 160 PFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSS----EDGHH 235 (612)
Q Consensus 160 ~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~----~~~~~ 235 (612)
+++|++|+.|++|++||..++++...+.+|...|.+++|+|++++|++++.|++|++||+.+++....+.. ..+|.
T Consensus 160 ~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~ 239 (611)
T 1nr0_A 160 PFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHS 239 (611)
T ss_dssp SCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSS
T ss_pred CeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccC
Confidence 86799999999999999999999999999999999999999999999999999999999999988877621 11699
Q ss_pred ccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCC
Q 007229 236 GSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASN 315 (612)
Q Consensus 236 ~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 315 (612)
..|.+++|+|++++|++++.|++|++||+ .+++.+..+.... ........+.+.+..+++++.++.+++|+...
T Consensus 240 ~~V~~v~~spdg~~l~s~s~D~~v~lWd~----~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~ 313 (611)
T 1nr0_A 240 GSVFGLTWSPDGTKIASASADKTIKIWNV----ATLKVEKTIPVGT--RIEDQQLGIIWTKQALVSISANGFINFVNPEL 313 (611)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEET----TTTEEEEEEECCS--SGGGCEEEEEECSSCEEEEETTCCEEEEETTT
T ss_pred CCEEEEEECCCCCEEEEEeCCCeEEEEeC----CCCceeeeecCCC--CccceeEEEEEcCCEEEEEeCCCcEEEEeCCC
Confidence 99999999999999999999999999999 8888888876543 23344566667889999999999999999665
Q ss_pred CCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeec-eecccceEEEEe-eccEEEEecCCCeEE
Q 007229 316 LDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLE-KKYDARIKCLAA-VEEVIFTAGFDNKVW 393 (612)
Q Consensus 316 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~-~~~~~~i~~~~~-~~~~l~~~~~~~~i~ 393 (612)
. .....+.+|...|.+++|++ +++++++++.|+.|++||+.++...... ..|...+.++++ .+..+++++.|+.++
T Consensus 314 ~-~~~~~~~gh~~~v~~l~~sp-dg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~ 391 (611)
T 1nr0_A 314 G-SIDQVRYGHNKAITALSSSA-DGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLK 391 (611)
T ss_dssp T-EEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEE
T ss_pred C-CcceEEcCCCCCEEEEEEeC-CCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceE
Confidence 4 35667889999999999984 3899999999999999999998876654 348899999999 667899999999999
Q ss_pred EEecCCCCCCcc--ceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecC
Q 007229 394 RVPLCEGECGDA--EHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQN 471 (612)
Q Consensus 394 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d 471 (612)
+|+......... ........+..+++++++...+. ...+.+.+|+..+ +..+.+...+.+++|+|||++||+|+.|
T Consensus 392 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~-~~~~~v~~~~~~~-~~~~~~~~~v~~va~spdg~~lasgs~D 469 (611)
T 1nr0_A 392 VVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVA-ACYKHIAIYSHGK-LTEVPISYNSSCVALSNDKQFVAVGGQD 469 (611)
T ss_dssp EECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEE-EESSEEEEEETTE-EEEEECSSCEEEEEECTTSCEEEEEETT
T ss_pred EeecCCccccccceeeeecCCCCcEEEEeCCCcEEEE-EeCceEEEEeCCc-eeeeecCCCceEEEEeCCCCEEEEeCCC
Confidence 999887654321 11234456678889888855544 4667788888665 6666788889999999999999999999
Q ss_pred CeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCC-cceeee-cccccccceeEEEecCCC
Q 007229 472 GKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVS-KEVKLN-NMLFHTARINCLAWSPSS 549 (612)
Q Consensus 472 g~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~-~~~~~~-~~~~~~~~i~~~~~s~~~ 549 (612)
+.|++||+.++....... .+|...|++++|+||+++|++++.|++|++||+.+ ++.... .+.+|...|.+++|+|||
T Consensus 470 ~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg 548 (611)
T 1nr0_A 470 SKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDN 548 (611)
T ss_dssp SEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTS
T ss_pred CeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCC
Confidence 999999998776433334 67999999999999999999999999999999988 554422 244599999999999999
Q ss_pred cEEEEeecCcEEEEEEccCCCccee-eeeccc-ccCeeeEEEe-cCceEEEccCCCeEEEEEec
Q 007229 550 TMVATGSIDTCVIIYEIGKPASSRI-TIKNAH-LGGVYGVAFM-DDFNVVSSGEDACIRVWRLA 610 (612)
Q Consensus 550 ~~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~h-~~~v~~~~~~-~~~~l~s~~~d~~i~~w~~~ 610 (612)
++||+|+.|++|++||++.+. ... ..+.+| ...|.+++|+ ++. |++++.|++|++|++.
T Consensus 549 ~~lasgs~D~~v~lW~~~~~~-~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 549 VRLATGSLDNSVIVWNMNKPS-DHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp SEEEEEETTSCEEEEETTCTT-SCCEEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEECC
T ss_pred CEEEEEECCCcEEEEECCCcc-cccchhhccCcccCeeEEEEcCCCE-EEEecCCCCEEEEecc
Confidence 999999999999999998844 444 678899 8999999999 555 9999999999999984
No 2
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.5e-77 Score=609.23 Aligned_cols=579 Identities=32% Similarity=0.574 Sum_probs=513.8
Q ss_pred CceeEeeeeeccCCCCCCCceeEEEEccCCCEEEEecCCEEEEEeCCCC----ceeeEeccCCCc-eEEEEECC--CCCE
Q 007229 1 MAEVHLSETYACAPSTERGRGILISGNPKTDTILYCNGRSVLIRYLDKP----LHVEFYGEHGYP-VTVARYSP--NGEW 73 (612)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~i~i~~~~~~----~~~~~~~~h~~~-v~~~~~s~--d~~~ 73 (612)
|.+++++.++++.|..+++.|.+++|||||++|++++++.|.+||++++ +....+.+|... |++++|+| ++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~ 80 (615)
T 1pgu_A 1 MSSISLKEIIPPQPSTQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQY 80 (615)
T ss_dssp -CCEEEEEEECCCCCCCTTCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCE
T ss_pred CCccchhhccCCCCCCccCceeEEEECCCCCEEEEecCCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCE
Confidence 8899999999999999999999999999999999999999999999998 889999999999 99999999 9999
Q ss_pred EEEeeCcCeEEEeecCCC-------ceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccC
Q 007229 74 IASADVSGSVRIWGTHNG-------FVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGH 146 (612)
Q Consensus 74 las~~~d~~i~iwd~~~~-------~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~ 146 (612)
||+++.||.|++||+.++ ......+..|...|.+++|+|++++|++++.+... ...++.|+.++.+..+.+|
T Consensus 81 l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~v~~~d~~~~~~~~~~~ 159 (615)
T 1pgu_A 81 LCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDN-FGVFISWDSGNSLGEVSGH 159 (615)
T ss_dssp EEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSC-SEEEEETTTCCEEEECCSC
T ss_pred EEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCC-ccEEEEEECCCcceeeecC
Confidence 999999999999999755 22566778899999999999999999999977432 3579999999999999999
Q ss_pred CceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeeccccccc---ceEEEEECCC-CCeEEEEEcCCcEEEEecCCC
Q 007229 147 SRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSN---FVNCIRFSPD-GSKLISVSSDRKGLIYDGKSG 222 (612)
Q Consensus 147 ~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~---~v~~~~~s~~-~~~l~~~~~dg~i~vwd~~~~ 222 (612)
...|.+++|+|++++++++++.|+.|++||+.+++.+..+.+|.. .|.+++|+|+ +++|++++.|+.|++||+.++
T Consensus 160 ~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 239 (615)
T 1pgu_A 160 SQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSG 239 (615)
T ss_dssp SSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTC
T ss_pred CccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCC
Confidence 999999999999986799999999999999999999999999999 9999999999 999999999999999999999
Q ss_pred Ceeeeee-ccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeec-cCCEEE
Q 007229 223 EKIGEFS-SEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLW-QNDHLI 300 (612)
Q Consensus 223 ~~~~~~~-~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 300 (612)
+.+..+. ....|...|.+++|+ ++++|++++.||.|++||+ .+++.+..+..... .....+..+.+ .+..++
T Consensus 240 ~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~ 313 (615)
T 1pgu_A 240 EFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDV----TTSKCVQKWTLDKQ-QLGNQQVGVVATGNGRII 313 (615)
T ss_dssp CEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEET----TTTEEEEEEECCTT-CGGGCEEEEEEEETTEEE
T ss_pred CEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEEC----CCCcEEEEEcCCCC-cccCceeEEEeCCCCeEE
Confidence 9888772 111688999999999 9999999999999999999 88888888876532 22233344444 688999
Q ss_pred EEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEe-e
Q 007229 301 TVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAA-V 379 (612)
Q Consensus 301 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~-~ 379 (612)
+++.++.+++|++.. ......+.+|...|.++++ + . +++++.||.|++|++. ... ..|...|.++++ +
T Consensus 314 ~~~~~g~i~~~d~~~-~~~~~~~~~~~~~v~~~~~-~--~--l~~~~~dg~i~~w~~~---~~~--~~~~~~v~~~~~~~ 382 (615)
T 1pgu_A 314 SLSLDGTLNFYELGH-DEVLKTISGHNKGITALTV-N--P--LISGSYDGRIMEWSSS---SMH--QDHSNLIVSLDNSK 382 (615)
T ss_dssp EEETTSCEEEEETTE-EEEEEEECCCSSCEEEEET-T--T--TEEEETTSCEEETTTT---EEE--CCCCSCEEEEECCS
T ss_pred EEECCCCEEEEECCC-CcEEEEEeCCCCCEEEEEe-c--C--cEEECCCCeEEEEEch---hhc--CcccCceEEEEECC
Confidence 999999999999776 4556788899999999999 6 4 9999999999999998 222 559999999999 5
Q ss_pred ccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEee--cccceeeecccceEEEEE
Q 007229 380 EEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLD--SLKVMSKIDLGFTVTACA 457 (612)
Q Consensus 380 ~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~ 457 (612)
++.+++++.|+.+++|++.+..... .+..++++|++ ..++.+..+.+.+|+ .++.+..+.+...+.+++
T Consensus 383 ~~~l~~~~~d~~i~~~~~~~~~~~~--------~~~~~~~s~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (615)
T 1pgu_A 383 AQEYSSISWDDTLKVNGITKHEFGS--------QPKVASANNDG-FTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVS 453 (615)
T ss_dssp TTCCEEEETTTEEEETTEEEEECSS--------CEEEEEECSSS-EEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEE
T ss_pred CcEEEEEeCCCCEEEEEcccCcccC--------CceEEEEcCCC-CEEEEeCCCceEEEeccCCceeeecccCCCceEEE
Confidence 8899999999999999988765432 67788899988 455555788899998 788888888999999999
Q ss_pred EccCCCeEEEEec-CCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccc-
Q 007229 458 IAPDGSEAIVGGQ-NGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLF- 535 (612)
Q Consensus 458 ~s~~~~~l~~~~~-dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~- 535 (612)
|+ ++++++++. ||.|++||+.+++... ..+..|...|++++|+|++++|++++.||.|++||+.+++.+. .+.+
T Consensus 454 ~~--~~~l~~~~~~d~~i~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~-~~~~~ 529 (615)
T 1pgu_A 454 LS--QNYVAVGLEEGNTIQVFKLSDLEVSF-DLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKT-SRWAF 529 (615)
T ss_dssp EC--SSEEEEEETTTSCEEEEETTEEEEEE-ECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE-CCSCC
T ss_pred Ec--CCEEEEeecCCCeEEEEECCCccccc-cccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCccee-EeecC
Confidence 99 889999999 9999999999877633 6778899999999999999999999999999999999999874 4555
Q ss_pred cccceeEEEecC----------CCcEEEEeecCcEEEEEEccCCCcceeeeecccccCeeeEEEe-cCceEEEccCCCeE
Q 007229 536 HTARINCLAWSP----------SSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFM-DDFNVVSSGEDACI 604 (612)
Q Consensus 536 ~~~~i~~~~~s~----------~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~~~d~~i 604 (612)
|...|++++|+| ++++||+++.|+.|++||++++. +++..+.+|...|++++|+ ++. |++++.||.|
T Consensus 530 h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v 607 (615)
T 1pgu_A 530 RTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPM-KIIKALNAHKDGVNNLLWETPST-LVSSGADACI 607 (615)
T ss_dssp CSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTT-CCEEETTSSTTCEEEEEEEETTE-EEEEETTSCE
T ss_pred CCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCc-eechhhhcCccceEEEEEcCCCC-eEEecCCceE
Confidence 999999999999 99999999999999999999855 7888899999999999999 888 9999999999
Q ss_pred EEEEeccC
Q 007229 605 RVWRLATE 612 (612)
Q Consensus 605 ~~w~~~~~ 612 (612)
++|++++|
T Consensus 608 ~iw~~~~~ 615 (615)
T 1pgu_A 608 KRWNVVLE 615 (615)
T ss_dssp EEEEEC--
T ss_pred EEEeeecC
Confidence 99999875
No 3
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=6.6e-76 Score=591.52 Aligned_cols=557 Identities=22% Similarity=0.351 Sum_probs=476.6
Q ss_pred CCCCCceeEEEEccCCCEEEEec-CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCce
Q 007229 15 STERGRGILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFV 93 (612)
Q Consensus 15 ~~~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~ 93 (612)
++|++.|++++|||||++||+++ ++.|+|||. ++++++.+.+|...|++++|+|||++||+++.|++|+|||.. ++
T Consensus 13 ~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~-~~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~~-~~- 89 (577)
T 2ymu_A 13 EAHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQ- 89 (577)
T ss_dssp CCCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SC-
T ss_pred CCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEC-CCCEEEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECC-CC-
Confidence 46899999999999999999998 799999995 678889999999999999999999999999999999999965 44
Q ss_pred eeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEE
Q 007229 94 LKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVN 173 (612)
Q Consensus 94 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~ 173 (612)
....+.+|...|.+++|+||+++|++++.++. +.+|.. .........+|...+..+.++|++. .+++++.++.++
T Consensus 90 ~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~---~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~ 164 (577)
T 2ymu_A 90 LLQTLTGHSSSVRGVAFSPDGQTIASASDDKT---VKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQ-TIASASDDKTVK 164 (577)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSC---EEEEET-TCCEEEEECCCSSCEEEEEECTTSS-CEEEEETTSEEE
T ss_pred EEEEEECCCCCEEEEEECCCCCEEEEEcCCCc---eeeccc-ccceeeeccCCCCceeeeeeecCCc-cceeccccccee
Confidence 55688899999999999999999999999883 455543 4556677888999999999999999 599999999999
Q ss_pred EEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEE
Q 007229 174 FYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTV 253 (612)
Q Consensus 174 ~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~ 253 (612)
+|+.... .......|...|.+++|+|++++|++++.|+.|++||. +++.+..+ .+|...|.+++|+|++++|+++
T Consensus 165 ~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~-~~~~~~~~---~~~~~~v~~~~~s~dg~~l~~~ 239 (577)
T 2ymu_A 165 LWNRNGQ-LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTL---TGHSSSVRGVAFSPDGQTIASA 239 (577)
T ss_dssp EECTTSC-EEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEE---ECCSSCEEEEEECTTSSCEEEE
T ss_pred cccccee-eeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeC-CCcEEEEE---ecCCCCEEEEEECCCCCEEEEE
Confidence 9996544 45556789999999999999999999999999999995 56776666 3899999999999999999999
Q ss_pred eCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeec--cCCEEEEEEcCCEEEEEEcCCCCCCceeecCccccee
Q 007229 254 SADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLW--QNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVS 331 (612)
Q Consensus 254 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~ 331 (612)
+.|+.|++|+. +++.+..+..+. ..+.++.+ ++..+++++.++.+++|+.. ......+.+|...|.
T Consensus 240 ~~d~~i~~w~~-----~~~~~~~~~~~~-----~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~--~~~~~~~~~h~~~v~ 307 (577)
T 2ymu_A 240 SDDKTVKLWNR-----NGQLLQTLTGHS-----SSVNGVAFRPDGQTIASASDDKTVKLWNRN--GQLLQTLTGHSSSVW 307 (577)
T ss_dssp ETTSCEEEECT-----TSCEEEEECCCS-----SCEEEEEECTTSSEEEEEETTSCEEEEETT--SCEEEEECCCSSCEE
T ss_pred eCCCEEEEEeC-----CCCEEEEEecCC-----CCEEEEEEcCCCCEEEEEeCCCEEEEEeCC--CcEEEEEecCCCCeE
Confidence 99999999996 456666655443 23444444 47789999999999999954 355677889999999
Q ss_pred EEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEe--eccEEEEecCCCeEEEEecCCCCCCccceec
Q 007229 332 TLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAA--VEEVIFTAGFDNKVWRVPLCEGECGDAEHID 409 (612)
Q Consensus 332 ~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~ 409 (612)
++++++ ++..+++++.|+.|++||......... ..|...+.++++ +++.+++++.++.+++|+..... . .....
T Consensus 308 ~~~~~~-~~~~l~t~~~d~~i~~w~~~~~~~~~~-~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~-~-~~~~~ 383 (577)
T 2ymu_A 308 GVAFSP-DGQTIASASDDKTVKLWNRNGQHLQTL-TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQL-L-QTLTG 383 (577)
T ss_dssp EEEECT-TSSEEEEEETTSCEEEEETTSCEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCCE-E-EEEEC
T ss_pred EEEECC-CCCEEEEEeCCCeEEEEeCCCCeeEEE-eCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCCE-E-EEecC
Confidence 999983 278999999999999999877665444 348899999998 67899999999999999964322 1 23344
Q ss_pred cCCCcceeeecCCCCcEEEEEeeccEEEee-cccceeeec-ccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccc
Q 007229 410 VGSQPLDLSLALSSPELALVSTESGVILLD-SLKVMSKID-LGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEE 487 (612)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~ 487 (612)
....+.+++++|++..++....+..+.+|+ ..+.+..+. +...|++++|+||+++|++++.|+.|++||..... .
T Consensus 384 ~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~~---~ 460 (577)
T 2ymu_A 384 HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQL---L 460 (577)
T ss_dssp CSSCEEEEEECTTSSCEEEEETTSEEEEECTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCE---E
T ss_pred CCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCCE---E
Confidence 566788899999998888777778899998 444444444 78899999999999999999999999999976433 4
Q ss_pred eeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEcc
Q 007229 488 MVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIG 567 (612)
Q Consensus 488 ~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~ 567 (612)
..+.+|..+|++++|+|++++|++++.|+.|++||. +++.+ ..+.+|...|++++|+||+++||+++.|+.|++||..
T Consensus 461 ~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~-~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~ 538 (577)
T 2ymu_A 461 QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLL-QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN 538 (577)
T ss_dssp EEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEE-EEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT
T ss_pred EEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEE-EEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCC
Confidence 678899999999999999999999999999999996 45554 5678899999999999999999999999999999964
Q ss_pred CCCcceeeeecccccCeeeEEEe-cCceEEEccCCCeEEEEE
Q 007229 568 KPASSRITIKNAHLGGVYGVAFM-DDFNVVSSGEDACIRVWR 608 (612)
Q Consensus 568 ~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~~~d~~i~~w~ 608 (612)
+ +++..+.+|.+.|++++|+ |+++|+|++.|++|++||
T Consensus 539 --~-~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 539 --G-QLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp --S-CEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred --C-CEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 4 7889999999999999999 999999999999999997
No 4
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1e-68 Score=539.21 Aligned_cols=525 Identities=22% Similarity=0.357 Sum_probs=446.0
Q ss_pred ceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeE
Q 007229 50 LHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFV 129 (612)
Q Consensus 50 ~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i 129 (612)
+..+.|.||++.|++++|||||++||+|+.|++|+|||. +++ +...+.+|...|.+++|+||+++|++++.++ .+
T Consensus 7 ~e~~~L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~-~~~-~~~~l~gh~~~V~~l~fspdg~~las~~~d~---~i 81 (577)
T 2ymu_A 7 KERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQ-LLQTLTGHSSSVWGVAFSPDGQTIASASDDK---TV 81 (577)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSC-EEEEEECCSSCEEEEEECTTSSEEEEEETTS---CE
T ss_pred EEeeEECCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEC-CCC-EEEEEeCCCCCEEEEEECCCCCEEEEEeCCC---EE
Confidence 345669999999999999999999999999999999996 455 5668999999999999999999999999887 46
Q ss_pred EEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEE
Q 007229 130 RAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVS 209 (612)
Q Consensus 130 ~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 209 (612)
++|+. +++.+..+.+|...|.+++|+|+++ .+++++.|+.+++|+..... .....++...+.++.++|+++.+++++
T Consensus 82 ~vWd~-~~~~~~~~~~~~~~v~~~~~s~d~~-~l~~~~~d~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~ 158 (577)
T 2ymu_A 82 KLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQ-TIASASDDKTVKLWNRNGQL-LQTLTGHSSSVWGVAFSPDGQTIASAS 158 (577)
T ss_dssp EEEET-TSCEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTCCE-EEEECCCSSCEEEEEECTTSSCEEEEE
T ss_pred EEEEC-CCCEEEEEECCCCCEEEEEECCCCC-EEEEEcCCCceeecccccce-eeeccCCCCceeeeeeecCCccceecc
Confidence 77764 6788999999999999999999999 59999999999999976554 445678899999999999999999999
Q ss_pred cCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceee
Q 007229 210 SDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDML 289 (612)
Q Consensus 210 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (612)
.++.+++|+.......... .+...+..++|+|+++++++++.|+.|++||. +++.+..+..+. ..+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~-----~~~~~~~~~~~~-----~~v 224 (577)
T 2ymu_A 159 DDKTVKLWNRNGQLLQTLT----GHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-----NGQLLQTLTGHS-----SSV 224 (577)
T ss_dssp TTSEEEEECTTSCEEEEEE----CCSSCEEEEEECTTSSCEEEEETTSEEEEECT-----TSCEEEEEECCS-----SCE
T ss_pred cccceeccccceeeeeecc----CCCcceeeeeecCCCCEEEEEcCCCEEEEEeC-----CCcEEEEEecCC-----CCE
Confidence 9999999996544333333 78899999999999999999999999999996 566666665543 234
Q ss_pred eeeecc--CCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeece
Q 007229 290 VGCLWQ--NDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEK 367 (612)
Q Consensus 290 ~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~ 367 (612)
.++.+. +..+++++.++.+++|+.. ......+.+|...|.+++|.+ ++..+++++.|+.+++||.... ......
T Consensus 225 ~~~~~s~dg~~l~~~~~d~~i~~w~~~--~~~~~~~~~~~~~v~~v~~~~-d~~~l~~~~~d~~i~~w~~~~~-~~~~~~ 300 (577)
T 2ymu_A 225 RGVAFSPDGQTIASASDDKTVKLWNRN--GQLLQTLTGHSSSVNGVAFRP-DGQTIASASDDKTVKLWNRNGQ-LLQTLT 300 (577)
T ss_dssp EEEEECTTSSCEEEEETTSCEEEECTT--SCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTSC-EEEEEC
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEeCC--CCEEEEEecCCCCEEEEEEcC-CCCEEEEEeCCCEEEEEeCCCc-EEEEEe
Confidence 444444 6789999999999999953 456678889999999999983 2789999999999999997654 444445
Q ss_pred ecccceEEEEe--eccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEee-cccce
Q 007229 368 KYDARIKCLAA--VEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLD-SLKVM 444 (612)
Q Consensus 368 ~~~~~i~~~~~--~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 444 (612)
.|...|.++++ ++..+++++.|+.+++|+...... .........+..++++|++..++....++.+.+|+ +.+.+
T Consensus 301 ~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~--~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~ 378 (577)
T 2ymu_A 301 GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHL--QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLL 378 (577)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEE--EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCCEE
T ss_pred cCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCee--EEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCCEE
Confidence 58999999998 678999999999999999875543 22334456677899999998777777777788888 44444
Q ss_pred eeec-ccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEec
Q 007229 445 SKID-LGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDR 523 (612)
Q Consensus 445 ~~~~-~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~ 523 (612)
..+. +...|++++|+||+++|++++.|+.|++||... +. ...+.+|...|++++|+||+++|++++.|+.|++||+
T Consensus 379 ~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~-~~--~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~ 455 (577)
T 2ymu_A 379 QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-QL--LQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR 455 (577)
T ss_dssp EEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTC-CE--EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred EEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCC-CE--EEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC
Confidence 5444 788999999999999999999999999999654 33 5678899999999999999999999999999999997
Q ss_pred CCcceeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeecccccCeeeEEEe-cCceEEEccCCC
Q 007229 524 VSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFM-DDFNVVSSGEDA 602 (612)
Q Consensus 524 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~~~d~ 602 (612)
.. +.+ ..+.+|..+|++++|+||+++||+++.|+.|++||.. + +++..+.+|...|++++|+ ++++|++++.||
T Consensus 456 ~~-~~~-~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~--~-~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg 530 (577)
T 2ymu_A 456 NG-QLL-QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN--G-QLLQTLTGHSSSVRGVAFSPDGQTIASASDDK 530 (577)
T ss_dssp TS-CEE-EEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETT--S-CEEEEEECCSSCEEEEEECTTSSCEEEEETTS
T ss_pred CC-CEE-EEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCC--C-CEEEEEeCCCCCEEEEEEcCCCCEEEEEECcC
Confidence 54 443 5577899999999999999999999999999999965 4 7888999999999999999 899999999999
Q ss_pred eEEEEEec
Q 007229 603 CIRVWRLA 610 (612)
Q Consensus 603 ~i~~w~~~ 610 (612)
.|++||.+
T Consensus 531 ~v~lwd~~ 538 (577)
T 2ymu_A 531 TVKLWNRN 538 (577)
T ss_dssp EEEEECTT
T ss_pred EEEEEeCC
Confidence 99999965
No 5
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.5e-68 Score=536.87 Aligned_cols=526 Identities=15% Similarity=0.169 Sum_probs=429.3
Q ss_pred CCCCCceeEEEEccCCCEEEEec-CCEEEEEeCCCCc--eeeEeccCCCceEEEEECCCCCEEEEeeCc----CeEEEee
Q 007229 15 STERGRGILISGNPKTDTILYCN-GRSVLIRYLDKPL--HVEFYGEHGYPVTVARYSPNGEWIASADVS----GSVRIWG 87 (612)
Q Consensus 15 ~~~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~--~~~~~~~h~~~v~~~~~s~d~~~las~~~d----~~i~iwd 87 (612)
..|.+.|++++|||||++||+++ ++.|+|||+.+++ ....+.+|.+.|.+++|+|||++||+++.+ +.|++||
T Consensus 56 ~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd 135 (611)
T 1nr0_A 56 TEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD 135 (611)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT
T ss_pred cCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEee
Confidence 35788999999999999999998 8999999997543 455688999999999999999999998765 4788898
Q ss_pred cCCCceeeeeeeecCCCeEEEEECCCCC-EEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEe
Q 007229 88 THNGFVLKNEFKVLSGRIDDLQWSPDGL-RIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATC 166 (612)
Q Consensus 88 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 166 (612)
.. + ....+.+|...|.+++|+|++. .|++++.++ .+++|+..+++.+..+.+|...|.+++|+|+++ +|+++
T Consensus 136 ~~--~-~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~---~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~-~las~ 208 (611)
T 1nr0_A 136 TG--T-SNGNLTGQARAMNSVDFKPSRPFRIISGSDDN---TVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGS-LFAST 208 (611)
T ss_dssp TC--C-BCBCCCCCSSCEEEEEECSSSSCEEEEEETTS---CEEEEETTTBEEEEEECCCSSCEEEEEECTTSS-EEEEE
T ss_pred CC--C-CcceecCCCCCceEEEECCCCCeEEEEEeCCC---eEEEEECCCCeEeeeeccccCceEEEEECCCCC-EEEEE
Confidence 53 3 3346889999999999999997 599999988 578888778889999999999999999999999 69999
Q ss_pred ecCCeEEEEeCCCCeeeeccc-------ccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEE
Q 007229 167 GEDFLVNFYEGPPFKFKLSHR-------EHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIY 239 (612)
Q Consensus 167 ~~d~~i~~wd~~~~~~~~~~~-------~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~ 239 (612)
+.|++|++||+.+++....+. +|.+.|.+++|+|++++|++++.|++|++||+.+++.+..+.....+.....
T Consensus 209 s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~ 288 (611)
T 1nr0_A 209 GGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQL 288 (611)
T ss_dssp ETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEE
T ss_pred ECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeE
Confidence 999999999999998887773 7999999999999999999999999999999999998888754334555666
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeecc--CCEEEEEEcCCEEEEEEcCCCC
Q 007229 240 AVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQ--NDHLITVSLGGIISIFSASNLD 317 (612)
Q Consensus 240 ~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~ 317 (612)
.+.| +++.+++++.|+.+++|+. ..++....+..+. ..+.++.++ +..+++++.++.|++||+....
T Consensus 289 ~~~~--~~~~l~s~s~d~~i~~~~~----~~~~~~~~~~gh~-----~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~ 357 (611)
T 1nr0_A 289 GIIW--TKQALVSISANGFINFVNP----ELGSIDQVRYGHN-----KAITALSSSADGKTLFSADAEGHINSWDISTGI 357 (611)
T ss_dssp EEEE--CSSCEEEEETTCCEEEEET----TTTEEEEEECCCS-----SCEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred EEEE--cCCEEEEEeCCCcEEEEeC----CCCCcceEEcCCC-----CCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCc
Confidence 7777 6788999999999999998 7777666655443 345555554 7899999999999999987654
Q ss_pred CCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeec---eecccceEEEEe--eccEEEEecCCCeE
Q 007229 318 KAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLE---KKYDARIKCLAA--VEEVIFTAGFDNKV 392 (612)
Q Consensus 318 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~---~~~~~~i~~~~~--~~~~l~~~~~~~~i 392 (612)
.......+|...+.++++++ +..+++++.|+.+++|+.......... ........++++ +++.++++ .++.+
T Consensus 358 ~~~~~~~~h~~~v~~~~~s~--~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~-~~~~v 434 (611)
T 1nr0_A 358 SNRVFPDVHATMITGIKTTS--KGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAA-CYKHI 434 (611)
T ss_dssp EEECSSCSCSSCEEEEEECT--TSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEE-ESSEE
T ss_pred eeeecccCCcceEEEEEECC--CCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEE-eCceE
Confidence 43322367999999999995 568999999999999998875432211 113334566666 44455555 67789
Q ss_pred EEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeeccc----ceeeecccceEEEEEEccCCCeEEEE
Q 007229 393 WRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLK----VMSKIDLGFTVTACAIAPDGSEAIVG 468 (612)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~s~~~~~l~~~ 468 (612)
++|+.. . .........+.+++++|++..++..+.++.+.+|+... ......|...|++++|+||+++|+++
T Consensus 435 ~~~~~~--~---~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~ 509 (611)
T 1nr0_A 435 AIYSHG--K---LTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVAT 509 (611)
T ss_dssp EEEETT--E---EEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEE
T ss_pred EEEeCC--c---eeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEE
Confidence 999832 1 12233556678899999998887777788899998321 12334588899999999999999999
Q ss_pred ecCCeEEEEEccC-cccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceee-eccccc-ccceeEEEe
Q 007229 469 GQNGKLHIYSISG-NTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKL-NNMLFH-TARINCLAW 545 (612)
Q Consensus 469 ~~dg~v~i~d~~~-~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~-~~~~~~-~~~i~~~~~ 545 (612)
+.|+.|++|++.+ +++........|...|.+++|+||+++||+++.|++|++||+.++.... ..+.+| ...|++++|
T Consensus 510 s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~f 589 (611)
T 1nr0_A 510 DQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW 589 (611)
T ss_dssp ETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE
T ss_pred cCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhccCcccCeeEEEE
Confidence 9999999999987 5542221344599999999999999999999999999999999876432 456789 899999999
Q ss_pred cCCCcEEEEeecCcEEEEEEcc
Q 007229 546 SPSSTMVATGSIDTCVIIYEIG 567 (612)
Q Consensus 546 s~~~~~l~s~~~d~~i~iwd~~ 567 (612)
+||++ |++++.|++|++|++.
T Consensus 590 s~d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 590 LNETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp EETTE-EEEEETTSCEEEEECC
T ss_pred cCCCE-EEEecCCCCEEEEecc
Confidence 99998 9999999999999974
No 6
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.9e-68 Score=582.60 Aligned_cols=568 Identities=15% Similarity=0.198 Sum_probs=489.0
Q ss_pred CCCCceeEEEEccCCCEEEEec-CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCcee
Q 007229 16 TERGRGILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVL 94 (612)
Q Consensus 16 ~~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~ 94 (612)
.|.+.|++++|||||++|++++ ++.|++||+.+++.+..+.+|...|++++|+|||++||+++.||.|+|||+.+++ .
T Consensus 613 ~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~-~ 691 (1249)
T 3sfz_A 613 PHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGK-L 691 (1249)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC-E
T ss_pred cccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCc-e
Confidence 5788999999999999999988 7999999999999999999999999999999999999999999999999999998 5
Q ss_pred eeeeeecCCCeEEEEECC--CCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeE
Q 007229 95 KNEFKVLSGRIDDLQWSP--DGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLV 172 (612)
Q Consensus 95 ~~~~~~~~~~i~~~~~s~--~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i 172 (612)
...+.+|...|.+++|+| ++..+++++.++ .+.+|++++++.+..+.+|...|.+++|+|+++ .+++++.||.|
T Consensus 692 ~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~---~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~-~l~s~s~dg~v 767 (1249)
T 3sfz_A 692 VHTYDEHSEQVNCCHFTNKSNHLLLATGSNDF---FLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDE-LLASCSADGTL 767 (1249)
T ss_dssp EEEEECCSSCEEEEEECSSSSCCEEEEEETTS---CEEEEETTSSSEEEEECCCSSCEEEEEECSSTT-EEEEEESSSEE
T ss_pred EEEEcCCCCcEEEEEEecCCCceEEEEEeCCC---eEEEEECCCcchhheecCCCCCEEEEEEecCCC-EEEEEECCCeE
Confidence 568889999999999999 556888888887 578899889999999999999999999999999 59999999999
Q ss_pred EEEeCCCCeeeecccc-------------cccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEE
Q 007229 173 NFYEGPPFKFKLSHRE-------------HSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIY 239 (612)
Q Consensus 173 ~~wd~~~~~~~~~~~~-------------~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~ 239 (612)
++||+.+++....+.. +...+.+++|+|+|+.+++++ ++.+.+||+.++.....+. .+|...+.
T Consensus 768 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~~~~~~~--~~~~~~v~ 844 (1249)
T 3sfz_A 768 RLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLLAEIH--TGHHSTIQ 844 (1249)
T ss_dssp EEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTTCCEEEEEE--CSSSSCCC
T ss_pred EEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEEEEEecCCCceeEEc--CCCCCceE
Confidence 9999998877655431 234788999999999999877 7899999999999888773 47899999
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeecc--CCEEEEEEcCCEEEEEEcCCCC
Q 007229 240 AVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQ--NDHLITVSLGGIISIFSASNLD 317 (612)
Q Consensus 240 ~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~ 317 (612)
+++|+|+++++++++.||.|++|++ .++..+..+..+. ..+.++.++ +..+++++.++.+++|++....
T Consensus 845 ~~~~sp~~~~l~~~~~dg~v~vwd~----~~~~~~~~~~~h~-----~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~ 915 (1249)
T 3sfz_A 845 YCDFSPYDHLAVIALSQYCVELWNI----DSRLKVADCRGHL-----SWVHGVMFSPDGSSFLTASDDQTIRVWETKKVC 915 (1249)
T ss_dssp EEEECSSTTEEEEECSSSCEEEEET----TTTEEEEEECCCS-----SCEEEEEECTTSSEEEEEETTSCEEEEEHHHHH
T ss_pred EEEEcCCCCEEEEEeCCCeEEEEEc----CCCceeeecCCCc-----cceEEEEECCCCCEEEEEeCCCeEEEEEccccc
Confidence 9999999999999999999999999 8888887776543 345555554 6789999999999999965311
Q ss_pred CC------------------------------------ceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCce
Q 007229 318 KA------------------------------------PLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGY 361 (612)
Q Consensus 318 ~~------------------------------------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~ 361 (612)
.. ......+...+.++++++ +++.+++|+.+|.|++||+.++.
T Consensus 916 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp-~g~~l~~g~~~g~i~i~d~~~~~ 994 (1249)
T 3sfz_A 916 KNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSP-HLEYVAFGDEDGAIKIIELPNNR 994 (1249)
T ss_dssp SCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECT-TSSEEEEEETTSCCEEEETTTTS
T ss_pred eeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcC-CCCEEEEEcCCCCEEEEEcCCCc
Confidence 00 000112345677888873 28899999999999999999998
Q ss_pred eeeeceecccceEEEEe--eccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEee
Q 007229 362 SSKLEKKYDARIKCLAA--VEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLD 439 (612)
Q Consensus 362 ~~~~~~~~~~~i~~~~~--~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (612)
.......|...|.++++ +++++++++.|+.+++|++.++... ........+..+++++++ .++..+.++.+.+|+
T Consensus 995 ~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~--~~~~~~~~v~~~~~~~~~-~l~~~~~dg~v~vwd 1071 (1249)
T 3sfz_A 995 VFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV--FLQAHQETVKDFRLLQDS-RLLSWSFDGTVKVWN 1071 (1249)
T ss_dssp CEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEE--CCBCCSSCEEEEEECSSS-EEEEEESSSEEEEEE
T ss_pred eeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceE--EEecCCCcEEEEEEcCCC-cEEEEECCCcEEEEE
Confidence 88877779999999999 7789999999999999999887654 233555667788888854 677777778899998
Q ss_pred --cccceeeec-ccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCC
Q 007229 440 --SLKVMSKID-LGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNR 516 (612)
Q Consensus 440 --~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~ 516 (612)
+++....+. +...+++++|+|+++++++++.||.|++||+.+++. ...+.+|.+.|++++|+|++++|++++.||
T Consensus 1072 ~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~--~~~l~~h~~~v~~~~~s~dg~~lat~~~dg 1149 (1249)
T 3sfz_A 1072 VITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSP--LHELKGHNGCVRCSAFSLDGILLATGDDNG 1149 (1249)
T ss_dssp TTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSC--SBCCCCCSSCEEEEEECSSSSEEEEEETTS
T ss_pred CCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcce--eeeeccCCCcEEEEEECCCCCEEEEEeCCC
Confidence 455555555 788899999999999999999999999999998876 677889999999999999999999999999
Q ss_pred eEEEEecCCcceeeec--------ccccccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeecccccCeeeEE
Q 007229 517 EAIVWDRVSKEVKLNN--------MLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVA 588 (612)
Q Consensus 517 ~i~iwd~~~~~~~~~~--------~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~ 588 (612)
.|++||+.+++.+... ..+|...|++++|+|||++|++++ |.|++||+.+ + +.+..+..|...|.+++
T Consensus 1150 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~--g~v~vwd~~~-g-~~~~~~~~~~~~i~~~~ 1225 (1249)
T 3sfz_A 1150 EIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVAT-G-DSSQTFYTNGTNLKKIH 1225 (1249)
T ss_dssp CCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES--SSEEEBCSSS-C-BCCCCCCCSSCCCCCCE
T ss_pred EEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC--CeEEEEECCC-C-ceeeeeeccCCcccEEE
Confidence 9999999998875332 256899999999999999999885 8999999998 6 67888889999999999
Q ss_pred Ee-cCceEEEccCCCeEEEEEec
Q 007229 589 FM-DDFNVVSSGEDACIRVWRLA 610 (612)
Q Consensus 589 ~~-~~~~l~s~~~d~~i~~w~~~ 610 (612)
|+ ++++|++++.||.|++|++.
T Consensus 1226 ~s~dg~~l~~~~~dg~v~vw~l~ 1248 (1249)
T 3sfz_A 1226 VSPDFRTYVTVDNLGILYILQVL 1248 (1249)
T ss_dssp ECSSSCCEEEECTTCCEEEECCC
T ss_pred ECCCCCEEEEecCCcEEEEEeec
Confidence 99 89999999999999999974
No 7
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-62 Score=508.27 Aligned_cols=580 Identities=11% Similarity=0.059 Sum_probs=416.0
Q ss_pred CCCCceeEEEEccCCCEEEEec-CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCcee
Q 007229 16 TERGRGILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVL 94 (612)
Q Consensus 16 ~~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~ 94 (612)
.|.+.|++++|+||+++||+++ ++.|+||+..+.+....+ .|...|++++|+| |++||+++.|++|+|||+.+++.+
T Consensus 15 gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~-~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~ 92 (902)
T 2oaj_A 15 GMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKL-EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVL 92 (902)
T ss_dssp ECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEEC-SSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEE
T ss_pred CCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEc-CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEE
Confidence 5678999999999999999998 899999999887766544 5889999999999 889999999999999999998744
Q ss_pred eeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCcee-----------eeeccCCceEEEEEEcCCCCEEE
Q 007229 95 KNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTV-----------GDFDGHSRRVLSCEFKPTRPFRI 163 (612)
Q Consensus 95 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~-----------~~~~~~~~~v~~~~~~~~~~~~l 163 (612)
..+. |...|++++|+|++++|++++.++ .+++|+.++++.. ..+.+|...|.+++|+|++..++
T Consensus 93 -~~~~-~~~~V~~v~~sp~g~~l~sgs~dg---~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l 167 (902)
T 2oaj_A 93 -TTVF-VPGKITSIDTDASLDWMLIGLQNG---SMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTV 167 (902)
T ss_dssp -EEEE-CSSCEEEEECCTTCSEEEEEETTS---CEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEE
T ss_pred -EEEc-CCCCEEEEEECCCCCEEEEEcCCC---cEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEE
Confidence 3444 778999999999999999999988 5678877776653 34578999999999999765579
Q ss_pred EEeecCCeEEEEeCCCCeeeeccccc------------------ccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCee
Q 007229 164 ATCGEDFLVNFYEGPPFKFKLSHREH------------------SNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKI 225 (612)
Q Consensus 164 ~~~~~d~~i~~wd~~~~~~~~~~~~~------------------~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~ 225 (612)
++|+.|+.| +||+++++.+..+..| ...|.+++|+|+|++|++++.||.|++||+++++.+
T Consensus 168 ~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~ 246 (902)
T 2oaj_A 168 LISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMI 246 (902)
T ss_dssp EEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEE
T ss_pred EEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEE
Confidence 999999999 9999999988777655 578999999999999999999999999999999876
Q ss_pred ee--eeccC-------------CccccEEEEEEec----CC-CEEEEEeCC-----CcEEEEEeecCC------------
Q 007229 226 GE--FSSED-------------GHHGSIYAVSWSP----DG-KKVLTVSAD-----KSAKVWEILEDG------------ 268 (612)
Q Consensus 226 ~~--~~~~~-------------~~~~~v~~i~~~~----~~-~~l~~~~~d-----g~i~iw~~~~~~------------ 268 (612)
.. +.... .+..+|.+++|++ ++ .++++++.+ ..+.+|++....
T Consensus 247 ~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~ 326 (902)
T 2oaj_A 247 MARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKN 326 (902)
T ss_dssp EEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHH
T ss_pred EEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhh
Confidence 53 21001 1355899999964 33 466777665 378899862110
Q ss_pred --CCCeeEeeeeccCccccceeeeee--------eccCCEEEEEEcCCEEEEEEcCCCCCCc------eeecCcccceeE
Q 007229 269 --SGGRVIKTFASSTSNAVEDMLVGC--------LWQNDHLITVSLGGIISIFSASNLDKAP------LSFSGHVKNVST 332 (612)
Q Consensus 269 --~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~i~~~~~~~~~~~~------~~~~~~~~~v~~ 332 (612)
...+..+.+............... ..+...+++++.++.+++|++....... ..+..|...|++
T Consensus 327 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~ 406 (902)
T 2oaj_A 327 YYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATT 406 (902)
T ss_dssp HHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEE
T ss_pred hhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeE
Confidence 011122222211111111111111 0124478899999999999985432111 123345455655
Q ss_pred EEEEe---------------------------------cCCcEEEEEecCCcEEEEEcCCceeee--ec---------ee
Q 007229 333 LTALK---------------------------------ISQQTILSSSYDGAIIKWIRGVGYSSK--LE---------KK 368 (612)
Q Consensus 333 ~~~~~---------------------------------~~~~~l~~~~~dg~i~~wd~~~~~~~~--~~---------~~ 368 (612)
+++.+ ++++++++|+.|++|++||+..+.... .. ..
T Consensus 407 ~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~ 486 (902)
T 2oaj_A 407 SMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKA 486 (902)
T ss_dssp EEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCS
T ss_pred EEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCC
Confidence 55521 237899999999999999998874321 01 14
Q ss_pred cccceEEEEe--eccEEEEecCCCeEEEEecCCCCCCcc------ceeccCCCcceeeecCCCCcEEEEEeeccEEEeec
Q 007229 369 YDARIKCLAA--VEEVIFTAGFDNKVWRVPLCEGECGDA------EHIDVGSQPLDLSLALSSPELALVSTESGVILLDS 440 (612)
Q Consensus 369 ~~~~i~~~~~--~~~~l~~~~~~~~i~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (612)
|...|.++++ ++++|++++.|++|++|++.+.+.... ...........+...++ ..........-.+...
T Consensus 487 h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g 564 (902)
T 2oaj_A 487 KELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNG--VLVDVRDRAPTGVRQG 564 (902)
T ss_dssp SSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSC--SEEECGGGCCTTCSEE
T ss_pred CCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCcc--ccccccccCCCCCCCc
Confidence 7789999999 688999999999999999987642100 00000000000100110 0000000000000001
Q ss_pred ccceeeec-ccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccc---eeec-cccCceEEEEEc-----CCC---c
Q 007229 441 LKVMSKID-LGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEE---MVLE-KHRGAITVIQYS-----PDV---S 507 (612)
Q Consensus 441 ~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~---~~~~-~~~~~i~~~~~s-----~~~---~ 507 (612)
.+.+..+. |...|++++||||| +||+|+.|++|++||+++..+... ..+. +|.+.|++++|+ ||| +
T Consensus 565 ~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~ 643 (902)
T 2oaj_A 565 FMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSI 643 (902)
T ss_dssp EEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEE
T ss_pred cceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcce
Confidence 12233444 78899999999999 999999999999999987765211 2343 899999999999 885 8
Q ss_pred EEEEEcCCCeEEEEec---CCcceeeeccccc-----ccceeEEE-ec----------------------CCCcEEEEee
Q 007229 508 MFASADGNREAIVWDR---VSKEVKLNNMLFH-----TARINCLA-WS----------------------PSSTMVATGS 556 (612)
Q Consensus 508 ~l~~~~~d~~i~iwd~---~~~~~~~~~~~~~-----~~~i~~~~-~s----------------------~~~~~l~s~~ 556 (612)
+|++++.|++|++||+ .+++.. ..+.+| .++|.+++ |+ +++..|+++
T Consensus 644 ~l~sgs~D~tv~~wd~~p~~~g~~~-~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~- 721 (902)
T 2oaj_A 644 LMVCGTDMGEVITYKILPASGGKFD-VQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITG- 721 (902)
T ss_dssp EEEEEETTSEEEEEEEEECGGGCEE-EEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC-
T ss_pred EEEEEecCCcEEEEEEecCCCCcEE-EEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEe-
Confidence 9999999999999999 777765 344444 46777776 65 566555555
Q ss_pred cCcEEEEEEccCCCcceeeeecccccCeeeE---E------Ee-cCceEEEccCCCeEEEEEecc
Q 007229 557 IDTCVIIYEIGKPASSRITIKNAHLGGVYGV---A------FM-DDFNVVSSGEDACIRVWRLAT 611 (612)
Q Consensus 557 ~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~---~------~~-~~~~l~s~~~d~~i~~w~~~~ 611 (612)
+..||||++.+ + ++......|...+.++ . |+ ++..|++++.||+|++|++.+
T Consensus 722 -~~~ir~~~~~~-~-k~~~k~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~s~p~ 783 (902)
T 2oaj_A 722 -FDDIRLITLGK-S-KSTHKGFKYPLAATGLSYISTVEKNNDRKNLTVIITLEINGHLRVFTIPD 783 (902)
T ss_dssp -SSEEEEECTTC-C-CEEEEECSSCEEEEEEEEEEEECSSSCEEEEEEEEEEETTSEEEEEETTT
T ss_pred -ccceEEEeCcc-c-cceeeEcccceeeeEEEEEEeccccccccCceEEEEEeCCCcEEEEECcc
Confidence 77899999998 5 6666666777777776 5 67 788899999999999999864
No 8
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.1e-62 Score=538.55 Aligned_cols=539 Identities=18% Similarity=0.262 Sum_probs=454.5
Q ss_pred eeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEE
Q 007229 52 VEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRA 131 (612)
Q Consensus 52 ~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i 131 (612)
...+.+|.+.|++++|+|||++||+|+.||+|++||+.+++ ....+.+|...|.+++|+|++++|++++.++ .+.+
T Consensus 608 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~-~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~---~v~v 683 (1249)
T 3sfz_A 608 RLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGE-KLLDIKAHEDEVLCCAFSSDDSYIATCSADK---KVKI 683 (1249)
T ss_dssp SEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-EEEEECCCSSCEEEEEECTTSSEEEEEETTS---EEEE
T ss_pred eEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCC-EEEEeccCCCCEEEEEEecCCCEEEEEeCCC---eEEE
Confidence 44578999999999999999999999999999999999998 4557889999999999999999999999988 6888
Q ss_pred EEecCCceeeeeccCCceEEEEEEcCCC-CEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEc
Q 007229 132 FMWDSGTTVGDFDGHSRRVLSCEFKPTR-PFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSS 210 (612)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 210 (612)
|++.+++.+..+.+|...|.+++|+|++ ..++++|+.|+.|++||+.+++....+.+|...|.+++|+|++++|++++.
T Consensus 684 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~ 763 (1249)
T 3sfz_A 684 WDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSA 763 (1249)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEES
T ss_pred EECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEEC
Confidence 8888999999999999999999999953 236999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEecCCCCeeeeeecc----------CCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeecc
Q 007229 211 DRKGLIYDGKSGEKIGEFSSE----------DGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASS 280 (612)
Q Consensus 211 dg~i~vwd~~~~~~~~~~~~~----------~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~ 280 (612)
||.|++||+.+++....+... ......+.+++|+|+++.+++++ ++.+.+||+ .++.....+...
T Consensus 764 dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~----~~~~~~~~~~~~ 838 (1249)
T 3sfz_A 764 DGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDI----HTSGLLAEIHTG 838 (1249)
T ss_dssp SSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEET----TTCCEEEEEECS
T ss_pred CCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEEEEEe----cCCCceeEEcCC
Confidence 999999999998877665321 12234788999999999999886 689999999 888877777644
Q ss_pred CccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCc
Q 007229 281 TSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVG 360 (612)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~ 360 (612)
....+ ........+..+++++.++.+++|++.. ......+.+|...|.+++|++ ++..+++++.||.+++|++...
T Consensus 839 ~~~~v--~~~~~sp~~~~l~~~~~dg~v~vwd~~~-~~~~~~~~~h~~~v~~v~~sp-dg~~l~s~s~dg~v~vw~~~~~ 914 (1249)
T 3sfz_A 839 HHSTI--QYCDFSPYDHLAVIALSQYCVELWNIDS-RLKVADCRGHLSWVHGVMFSP-DGSSFLTASDDQTIRVWETKKV 914 (1249)
T ss_dssp SSSCC--CEEEECSSTTEEEEECSSSCEEEEETTT-TEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEHHHH
T ss_pred CCCce--EEEEEcCCCCEEEEEeCCCeEEEEEcCC-CceeeecCCCccceEEEEECC-CCCEEEEEeCCCeEEEEEcccc
Confidence 32221 2223333488999999999999999765 455677889999999999994 2789999999999999997542
Q ss_pred eeee-------------------------------------eceecccceEEEEe--eccEEEEecCCCeEEEEecCCCC
Q 007229 361 YSSK-------------------------------------LEKKYDARIKCLAA--VEEVIFTAGFDNKVWRVPLCEGE 401 (612)
Q Consensus 361 ~~~~-------------------------------------~~~~~~~~i~~~~~--~~~~l~~~~~~~~i~~~~~~~~~ 401 (612)
.... ........+.++++ +++++++++.+|.+++|++.++.
T Consensus 915 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~ 994 (1249)
T 3sfz_A 915 CKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNR 994 (1249)
T ss_dssp HSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTS
T ss_pred ceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCc
Confidence 1100 00113456777777 78899999999999999998876
Q ss_pred CCccceeccCCCcceeeecCCCCcEEEEEeeccEEEee--cccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEc
Q 007229 402 CGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLD--SLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSI 479 (612)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~ 479 (612)
.. .........+..++++|++..++..+.++.+.+|+ .++......+...+.+++++|++ .+++++.||.|++||+
T Consensus 995 ~~-~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~v~vwd~ 1072 (1249)
T 3sfz_A 995 VF-SSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDS-RLLSWSFDGTVKVWNV 1072 (1249)
T ss_dssp CE-EECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSS-EEEEEESSSEEEEEET
T ss_pred ee-eecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCC-cEEEEECCCcEEEEEC
Confidence 54 33345566788999999998888888888899998 44445555688899999999976 5778899999999999
Q ss_pred cCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccccccceeEEEecCCCcEEEEeecCc
Q 007229 480 SGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDT 559 (612)
Q Consensus 480 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~ 559 (612)
.+++. ...+.+|.+.|++++|+|++++|++++.|++|++||+.+++.. ..+.+|..+|++++|+|||++||+++.||
T Consensus 1073 ~~~~~--~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~-~~l~~h~~~v~~~~~s~dg~~lat~~~dg 1149 (1249)
T 3sfz_A 1073 ITGRI--ERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPL-HELKGHNGCVRCSAFSLDGILLATGDDNG 1149 (1249)
T ss_dssp TTTCC--CEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCS-BCCCCCSSCEEEEEECSSSSEEEEEETTS
T ss_pred CCCce--eEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCccee-eeeccCCCcEEEEEECCCCCEEEEEeCCC
Confidence 99887 6778899999999999999999999999999999999998876 56778999999999999999999999999
Q ss_pred EEEEEEccCCCcceeeee---------cccccCeeeEEEe-cCceEEEccCCCeEEEEEeccC
Q 007229 560 CVIIYEIGKPASSRITIK---------NAHLGGVYGVAFM-DDFNVVSSGEDACIRVWRLATE 612 (612)
Q Consensus 560 ~i~iwd~~~~~~~~~~~~---------~~h~~~v~~~~~~-~~~~l~s~~~d~~i~~w~~~~~ 612 (612)
.|++||+.+ + +.+..+ .+|.+.|++++|+ ++.+|++++ |.|++||++++
T Consensus 1150 ~i~vwd~~~-~-~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~--g~v~vwd~~~g 1208 (1249)
T 3sfz_A 1150 EIRIWNVSD-G-QLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATG 1208 (1249)
T ss_dssp CCCEEESSS-S-CCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES--SSEEEBCSSSC
T ss_pred EEEEEECCC-C-ceEEEeccccccccccccCceEEEEEECCCCCEEEECC--CeEEEEECCCC
Confidence 999999998 4 444433 6799999999999 889999886 89999998763
No 9
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.4e-61 Score=492.08 Aligned_cols=510 Identities=16% Similarity=0.181 Sum_probs=431.6
Q ss_pred CCCCc-eeEEEEcc--CCCEEEEec-CCEEEEEeCCCC--------ceeeEeccCCCceEEEEECCCCCEEEEeeCc---
Q 007229 16 TERGR-GILISGNP--KTDTILYCN-GRSVLIRYLDKP--------LHVEFYGEHGYPVTVARYSPNGEWIASADVS--- 80 (612)
Q Consensus 16 ~~~~~-v~~~~~s~--d~~~l~~~~-~~~i~i~~~~~~--------~~~~~~~~h~~~v~~~~~s~d~~~las~~~d--- 80 (612)
.|.+. |.+++|+| |+++|++++ ++.|++||+.++ +....+.+|...|.+++|+|++++|++++.+
T Consensus 61 ~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~ 140 (615)
T 1pgu_A 61 GHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDN 140 (615)
T ss_dssp TTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSC
T ss_pred cCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCC
Confidence 46778 99999999 999999998 899999999754 6677788999999999999999999999987
Q ss_pred -CeEEEeecCCCceeeeeeeecCCCeEEEEECCCCC-EEEEEeCCCCeeeEEEEEecCCceeeeeccCCc---eEEEEEE
Q 007229 81 -GSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGL-RIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSR---RVLSCEF 155 (612)
Q Consensus 81 -~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~---~v~~~~~ 155 (612)
+.|.+|| .++ ....+..|...|.+++|+|+++ .+++++.++ .+++|+..+++.+..+.+|.. .|.+++|
T Consensus 141 ~~~v~~~d--~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~---~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~ 214 (615)
T 1pgu_A 141 FGVFISWD--SGN-SLGEVSGHSQRINACHLKQSRPMRSMTVGDDG---SVVFYQGPPFKFSASDRTHHKQGSFVRDVEF 214 (615)
T ss_dssp SEEEEETT--TCC-EEEECCSCSSCEEEEEECSSSSCEEEEEETTT---EEEEEETTTBEEEEEECSSSCTTCCEEEEEE
T ss_pred ccEEEEEE--CCC-cceeeecCCccEEEEEECCCCCcEEEEEeCCC---cEEEEeCCCcceeeeecccCCCCceEEEEEE
Confidence 7899999 344 4557889999999999999998 788888887 678888889999999999999 9999999
Q ss_pred cCC-CCEEEEEeecCCeEEEEeCCCCeeeecc-c---ccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeec
Q 007229 156 KPT-RPFRIATCGEDFLVNFYEGPPFKFKLSH-R---EHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSS 230 (612)
Q Consensus 156 ~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~-~---~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 230 (612)
+|+ ++ ++++++.|+.|++||+.+++.+..+ . .|...|.+++|+ ++++|++++.|+.|++||+++++.+..+..
T Consensus 215 ~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~ 292 (615)
T 1pgu_A 215 SPDSGE-FVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTL 292 (615)
T ss_dssp CSTTCC-EEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred CCCCCC-EEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcC
Confidence 999 88 5999999999999999999999888 6 899999999999 999999999999999999999998888743
Q ss_pred c-CCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEE
Q 007229 231 E-DGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIIS 309 (612)
Q Consensus 231 ~-~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 309 (612)
. ..+...+.++.|. +++++++++.||.|++||+ .+++.+..+..+. ..+.++.+ ++ +++++.+|.++
T Consensus 293 ~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~----~~~~~~~~~~~~~-----~~v~~~~~-~~-l~~~~~dg~i~ 360 (615)
T 1pgu_A 293 DKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYEL----GHDEVLKTISGHN-----KGITALTV-NP-LISGSYDGRIM 360 (615)
T ss_dssp CTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEET----TEEEEEEEECCCS-----SCEEEEET-TT-TEEEETTSCEE
T ss_pred CCCcccCceeEEEeC-CCCeEEEEECCCCEEEEEC----CCCcEEEEEeCCC-----CCEEEEEe-cC-cEEECCCCeEE
Confidence 2 2235788888886 8899999999999999999 7777777776543 45677777 66 99999999999
Q ss_pred EEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEe--eccEEEEec
Q 007229 310 IFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAA--VEEVIFTAG 387 (612)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~ 387 (612)
+|++. .+ . .+|...|.++++.+ +..+++++.|+.+++|++...+... .+.++++ ++..++++
T Consensus 361 ~w~~~----~~-~-~~~~~~v~~~~~~~--~~~l~~~~~d~~i~~~~~~~~~~~~-------~~~~~~~s~~~~~~~~~- 424 (615)
T 1pgu_A 361 EWSSS----SM-H-QDHSNLIVSLDNSK--AQEYSSISWDDTLKVNGITKHEFGS-------QPKVASANNDGFTAVLT- 424 (615)
T ss_dssp ETTTT----EE-E-CCCCSCEEEEECCS--TTCCEEEETTTEEEETTEEEEECSS-------CEEEEEECSSSEEEEEE-
T ss_pred EEEch----hh-c-CcccCceEEEEECC--CcEEEEEeCCCCEEEEEcccCcccC-------CceEEEEcCCCCEEEEe-
Confidence 99977 22 2 78999999999954 7899999999999999987665432 4566666 45445554
Q ss_pred CCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEe-eccEEEeeccc--ce-ee-ecccceEEEEEEccCC
Q 007229 388 FDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVST-ESGVILLDSLK--VM-SK-IDLGFTVTACAIAPDG 462 (612)
Q Consensus 388 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~-~~-~~~~~~i~~~~~s~~~ 462 (612)
.++.+.+|+..++... ........+..++++ +..++.... ++.+.+|+... .. .. ..+...|++++|+|++
T Consensus 425 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g 500 (615)
T 1pgu_A 425 NDDDLLILQSFTGDII--KSVRLNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSE 500 (615)
T ss_dssp TTSEEEEEETTTCCEE--EEEECSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTS
T ss_pred CCCceEEEeccCCcee--eecccCCCceEEEEc--CCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCC
Confidence 8899999998766543 233456677788888 545555555 67788988332 21 22 2378899999999999
Q ss_pred CeEEEEecCCeEEEEEccCcccccceeecc-ccCceEEEEEcC----------CCcEEEEEcCCCeEEEEecCCcceeee
Q 007229 463 SEAIVGGQNGKLHIYSISGNTLTEEMVLEK-HRGAITVIQYSP----------DVSMFASADGNREAIVWDRVSKEVKLN 531 (612)
Q Consensus 463 ~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~-~~~~i~~~~~s~----------~~~~l~~~~~d~~i~iwd~~~~~~~~~ 531 (612)
++|++++.||.|++||+.+++. ...+.+ |...|++++|+| ++++|++++.||.|++||+.++.....
T Consensus 501 ~~l~~~~~dg~i~iw~~~~~~~--~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 578 (615)
T 1pgu_A 501 TYIAAGDVMGKILLYDLQSREV--KTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIK 578 (615)
T ss_dssp SEEEEEETTSCEEEEETTTTEE--EECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEE
T ss_pred CEEEEcCCCCeEEEeeCCCCcc--eeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceech
Confidence 9999999999999999998877 566777 999999999999 999999999999999999999844446
Q ss_pred cccccccceeEEEecCCCcEEEEeecCcEEEEEEccC
Q 007229 532 NMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGK 568 (612)
Q Consensus 532 ~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~ 568 (612)
.+.+|...|++++|+|+++ |++++.|+.|++|+++.
T Consensus 579 ~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 579 ALNAHKDGVNNLLWETPST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp ETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred hhhcCccceEEEEEcCCCC-eEEecCCceEEEEeeec
Confidence 7888999999999999999 99999999999999875
No 10
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-59 Score=488.32 Aligned_cols=511 Identities=14% Similarity=0.141 Sum_probs=382.9
Q ss_pred eccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEe
Q 007229 55 YGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMW 134 (612)
Q Consensus 55 ~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~ 134 (612)
..+|...|++++|+|++++||+|+.||+|+|||..+.+.. ....|...|.+++|+| |++|++++.++ .+++|++
T Consensus 13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~--~~~~~~~~V~~l~fsp-g~~L~S~s~D~---~v~lWd~ 86 (902)
T 2oaj_A 13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVV--IKLEDRSAIKEMRFVK-GIYLVVINAKD---TVYVLSL 86 (902)
T ss_dssp EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEE--EECSSCCCEEEEEEET-TTEEEEEETTC---EEEEEET
T ss_pred ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEE--EEcCCCCCEEEEEEcC-CCEEEEEECcC---eEEEEEC
Confidence 3489999999999999999999999999999999877632 2234788999999999 88999999988 6788888
Q ss_pred cCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeee-----------ecccccccceEEEEECCC-C
Q 007229 135 DSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFK-----------LSHREHSNFVNCIRFSPD-G 202 (612)
Q Consensus 135 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~-----------~~~~~~~~~v~~~~~s~~-~ 202 (612)
++++.+..+. |...|++++|+|+++ .+++|+.||.|++||+.+++.. ..+.+|.++|.+++|+|+ +
T Consensus 87 ~~~~~~~~~~-~~~~V~~v~~sp~g~-~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~ 164 (902)
T 2oaj_A 87 YSQKVLTTVF-VPGKITSIDTDASLD-WMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDI 164 (902)
T ss_dssp TTCSEEEEEE-CSSCEEEEECCTTCS-EEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEE
T ss_pred CCCcEEEEEc-CCCCEEEEEECCCCC-EEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCC
Confidence 8999988886 778999999999999 5999999999999999988764 345789999999999996 4
Q ss_pred CeEEEEEcCCcEEEEecCCCCeeeeeecc---------------CCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecC
Q 007229 203 SKLISVSSDRKGLIYDGKSGEKIGEFSSE---------------DGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILED 267 (612)
Q Consensus 203 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~---------------~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~ 267 (612)
..|++++.||.| +||+++++.+..+... ..|...|.+++|+|+|++|++++.||.|++||+
T Consensus 165 ~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~--- 240 (902)
T 2oaj_A 165 GTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDA--- 240 (902)
T ss_dssp EEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEET---
T ss_pred CEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEEC---
Confidence 789999999999 9999999888776311 123578999999999999999999999999999
Q ss_pred CCCCeeEeeeec-----cCc------c--ccceeeeeeecc----C---CEEEEEEcC-----CEEEEEEcCCC------
Q 007229 268 GSGGRVIKTFAS-----STS------N--AVEDMLVGCLWQ----N---DHLITVSLG-----GIISIFSASNL------ 316 (612)
Q Consensus 268 ~~~~~~~~~~~~-----~~~------~--~~~~~~~~~~~~----~---~~~~~~~~~-----~~i~~~~~~~~------ 316 (612)
.+++++..... +.. . .....+.++.|. + ..+++++.+ ..+.+|++...
T Consensus 241 -~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~ 319 (902)
T 2oaj_A 241 -NSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSIT 319 (902)
T ss_dssp -TTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGC
T ss_pred -CCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCcccc
Confidence 77777653211 100 0 112346666663 2 345566554 37888884311
Q ss_pred -----------CCCceeec-CcccceeEEEEEe---------cCCcEEEEEecCCcEEEEEcCCceeeee-------cee
Q 007229 317 -----------DKAPLSFS-GHVKNVSTLTALK---------ISQQTILSSSYDGAIIKWIRGVGYSSKL-------EKK 368 (612)
Q Consensus 317 -----------~~~~~~~~-~~~~~v~~~~~~~---------~~~~~l~~~~~dg~i~~wd~~~~~~~~~-------~~~ 368 (612)
......+. .+...+..+.+.+ .++..+++++.||.|++||+.++..... ...
T Consensus 320 s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~ 399 (902)
T 2oaj_A 320 SYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSW 399 (902)
T ss_dssp CHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTT
T ss_pred chhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccc
Confidence 01122222 3566777777643 2345788899999999999976643221 111
Q ss_pred cccceEEEEe------------------------------------eccEEEEecCCCeEEEEecCCCCCCccceeccCC
Q 007229 369 YDARIKCLAA------------------------------------VEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGS 412 (612)
Q Consensus 369 ~~~~i~~~~~------------------------------------~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 412 (612)
|...|.++++ +++.+++++.|++|++||+.++.........
T Consensus 400 ~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~--- 476 (902)
T 2oaj_A 400 LRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFE--- 476 (902)
T ss_dssp BTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEE---
T ss_pred cCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEE---
Confidence 3344554443 4567777777777777777665321000000
Q ss_pred CcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCccc--------
Q 007229 413 QPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTL-------- 484 (612)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~-------- 484 (612)
+.+. +.+ ...|...|++++|+||+++||+|+.||+|++|++.+++.
T Consensus 477 ----~~l~---------------------~~~-~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~ 530 (902)
T 2oaj_A 477 ----VNLS---------------------RTL-NKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPE 530 (902)
T ss_dssp ----EEHH---------------------HHT-TCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC--------
T ss_pred ----eech---------------------hhc-CCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCC
Confidence 0000 000 013556899999999999999999999999999987631
Q ss_pred -----------------------------------ccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCccee
Q 007229 485 -----------------------------------TEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVK 529 (612)
Q Consensus 485 -----------------------------------~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~ 529 (612)
.+...+.+|.+.|++++||||| +||+|+.|++|++||++++..+
T Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~ 609 (902)
T 2oaj_A 531 SGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAII 609 (902)
T ss_dssp -------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEE
T ss_pred CcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEE
Confidence 1245678899999999999999 9999999999999999887764
Q ss_pred e----eccc-ccccceeEEEec-----CCC---cEEEEeecCcEEEEEEc---cCCCcceeeeecccc-----cCeeeEE
Q 007229 530 L----NNML-FHTARINCLAWS-----PSS---TMVATGSIDTCVIIYEI---GKPASSRITIKNAHL-----GGVYGVA 588 (612)
Q Consensus 530 ~----~~~~-~~~~~i~~~~~s-----~~~---~~l~s~~~d~~i~iwd~---~~~~~~~~~~~~~h~-----~~v~~~~ 588 (612)
. ..+. +|...|++++|+ ||| ++|++|+.|++|++||+ .+ + ++...+.+|. ++|.++.
T Consensus 610 ~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~-g-~~~~~~~~~~~~~~~~~v~~i~ 687 (902)
T 2oaj_A 610 YMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASG-G-KFDVQLMDITNVTSKGPIHKID 687 (902)
T ss_dssp EEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGG-G-CEEEEEEEEEECCSSCCCCEEE
T ss_pred EEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCC-C-cEEEEecCceecCCCCceEEEE
Confidence 3 2343 899999999999 886 89999999999999999 55 5 6777777774 6788777
Q ss_pred -Ee----------------------cCceEEEccCCCeEEEEEecc
Q 007229 589 -FM----------------------DDFNVVSSGEDACIRVWRLAT 611 (612)
Q Consensus 589 -~~----------------------~~~~l~s~~~d~~i~~w~~~~ 611 (612)
|+ .+.+++.++ +..||+|++.+
T Consensus 688 ~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~-~~~ir~~~~~~ 732 (902)
T 2oaj_A 688 AFSKETKSSCLATIPKMQNLSKGLCIPGIVLITG-FDDIRLITLGK 732 (902)
T ss_dssp EEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC-SSEEEEECTTC
T ss_pred eEecCCCCcccCCHHHHhccCCCCCCCeEEEEEe-ccceEEEeCcc
Confidence 54 133455555 77899999875
No 11
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.4e-54 Score=454.66 Aligned_cols=477 Identities=17% Similarity=0.221 Sum_probs=382.8
Q ss_pred ceeEeeeeeccCCCCCCCceeEEEEccCCCEEEEec-CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCc
Q 007229 2 AEVHLSETYACAPSTERGRGILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVS 80 (612)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d 80 (612)
|.+.+.+.+. .|.+.|.+++|||||++||+++ ++.|.|||+.+++.+..+.+|...|++++|+|++++||+++.|
T Consensus 1 m~l~~~~~~~----~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 76 (814)
T 3mkq_A 1 MKLDIKKTFS----NRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDD 76 (814)
T ss_dssp -CCCCEEEEE----EECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETT
T ss_pred CCcccceeee----cCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCC
Confidence 4455555553 4677999999999999999998 7999999999999999999999999999999999999999999
Q ss_pred CeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCC-ceeeeeccCCceEEEEEEcC-C
Q 007229 81 GSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSG-TTVGDFDGHSRRVLSCEFKP-T 158 (612)
Q Consensus 81 ~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~-~~~~~~~~~~~~v~~~~~~~-~ 158 (612)
|.|++||+.+++ ....+.+|...|.+++|+|++++|++++.++ .+++|+++++ .....+.+|...|.+++|+| +
T Consensus 77 g~i~vw~~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 152 (814)
T 3mkq_A 77 FRIRVFNYNTGE-KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDL---TVKLWNWENNWALEQTFEGHEHFVMCVAFNPKD 152 (814)
T ss_dssp SEEEEEETTTCC-EEEEEECCSSCEEEEEECSSSSEEEEEETTS---EEEEEEGGGTSEEEEEEECCSSCEEEEEEETTE
T ss_pred CeEEEEECCCCc-EEEEEecCCCCEEEEEEeCCCCEEEEEcCCC---EEEEEECCCCceEEEEEcCCCCcEEEEEEEcCC
Confidence 999999999998 5557888999999999999999999999988 6788888876 77788899999999999999 6
Q ss_pred CCEEEEEeecCCeEEEEeCCCCeeeecccccc-cceEEEEECC--CCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCcc
Q 007229 159 RPFRIATCGEDFLVNFYEGPPFKFKLSHREHS-NFVNCIRFSP--DGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHH 235 (612)
Q Consensus 159 ~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~-~~v~~~~~s~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 235 (612)
+. .+++++.||.|++||+.++.....+..+. ..+.+++|+| ++++|++++.||.|++||+.+++.+..+ .+|.
T Consensus 153 ~~-~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~---~~~~ 228 (814)
T 3mkq_A 153 PS-TFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL---EGHM 228 (814)
T ss_dssp EE-EEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEE---ECCS
T ss_pred CC-EEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEE---cCCC
Confidence 65 69999999999999999888777766554 8899999999 9999999999999999999999988887 3789
Q ss_pred ccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCC
Q 007229 236 GSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASN 315 (612)
Q Consensus 236 ~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 315 (612)
..|.+++|+|+++++++++.||.|++||+ .+++.+..+
T Consensus 229 ~~v~~~~~~~~~~~l~~~~~dg~v~vwd~----~~~~~~~~~-------------------------------------- 266 (814)
T 3mkq_A 229 SNVSFAVFHPTLPIIISGSEDGTLKIWNS----STYKVEKTL-------------------------------------- 266 (814)
T ss_dssp SCEEEEEECSSSSEEEEEETTSCEEEEET----TTCSEEEEE--------------------------------------
T ss_pred CCEEEEEEcCCCCEEEEEeCCCeEEEEEC----CCCcEEEEe--------------------------------------
Confidence 99999999999999999999999999999 665554433
Q ss_pred CCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCe---E
Q 007229 316 LDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNK---V 392 (612)
Q Consensus 316 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~---i 392 (612)
..|...+.++++++.....+++.+.++.+.+|++..... ...+..++..+++++.+.. +
T Consensus 267 --------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~g~~~~~~~~~~~~~~~ 328 (814)
T 3mkq_A 267 --------NVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEP----------TLSLDPVGKLVWSGGKNAAASDI 328 (814)
T ss_dssp --------CCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSC----------CEEECSSSEEEEECCTTSCTTCE
T ss_pred --------ecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCc----------eeEECCCCCEEEECcccccceee
Confidence 345667888888853334445555577788888764432 2233334555555544331 1
Q ss_pred EEE------ecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEE
Q 007229 393 WRV------PLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAI 466 (612)
Q Consensus 393 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 466 (612)
... ++...... .........+...+.+++|+|+|++++
T Consensus 329 ~~~~~~~~~~~~~~~~~------------------------------------~~~~~~~~~~~~~~~~~~~spdg~~la 372 (814)
T 3mkq_A 329 FTAVIRGNEEVEQDEPL------------------------------------SLQTKELGSVDVFPQSLAHSPNGRFVT 372 (814)
T ss_dssp EEEECCSCCCCCSSSCB------------------------------------CCCCEEECCCSSCCSEEEECTTSSEEE
T ss_pred eeeecccccccccCccc------------------------------------eeeeecCCCCccCCceeEECCCCCEEE
Confidence 111 11111000 000011112345688999999999999
Q ss_pred EEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccccccceeEEEec
Q 007229 467 VGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWS 546 (612)
Q Consensus 467 ~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s 546 (612)
+++ +|.+.+|++..... .+.+.+.+++|+|+++++++++.++.|++|+ .+.+|...+.+++|+
T Consensus 373 ~~~-~~~~~i~~~~~~~~-------~~~~~i~~~~~spdg~~la~~~~~g~v~l~~---------~~~~~~~~v~~~~~s 435 (814)
T 3mkq_A 373 VVG-DGEYVIYTALAWRN-------KAFGKCQDFVWGPDSNSYALIDETGQIKYYK---------NFKEVTSWSVPMHSA 435 (814)
T ss_dssp EEE-TTEEEEEETTTTEE-------EEEEECSEEEECTTSSCEEEECTTCCEEEEE---------TTEECTTCCCCCSSC
T ss_pred Eec-CCEEEEEECccccc-------cCCCceEEEEEeCCCCeEEEEeCCCcEEEEE---------CCCCccceEEcCCcC
Confidence 988 89999999764332 2456789999999999999999999999995 244577889999999
Q ss_pred CCC---cEEEEeecCcEEEEEEccCCCcceeeeecccccCeeeEEEe-cCceEEEc------cCCCeEEEEE
Q 007229 547 PSS---TMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFM-DDFNVVSS------GEDACIRVWR 608 (612)
Q Consensus 547 ~~~---~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~------~~d~~i~~w~ 608 (612)
|++ ++|++++.|+.|++||+.+ + +.+..+..|.. .+.|+ ++++|+++ +.++.+.+|-
T Consensus 436 ~dg~~~~~l~~~~~d~~v~~~d~~~-~-~~~~~~~~~~~---~v~~s~dg~~la~~~~~~~~~~~~~~~~~~ 502 (814)
T 3mkq_A 436 IDRLFSGALLGVKSDGFVYFFDWDN-G-TLVRRIDVNAK---DVIWSDNGELVMIVNTNSNGDEASGYTLLF 502 (814)
T ss_dssp CCEEECSSSEEEEETTEEEEECTTT-C-CEEEEESSCEE---EEEECTTSSEEEEEECCCSSCSCSEEEEEE
T ss_pred ccceecceEEEEecCCEEEEEECCc-C-cEEEEEecCCC---EEEEcCCCCEEEEEEcCcccCCceEEEEEe
Confidence 998 6899999999999999998 6 77888887775 89999 89999999 6776666653
No 12
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=6.1e-51 Score=427.18 Aligned_cols=435 Identities=19% Similarity=0.276 Sum_probs=363.5
Q ss_pred ceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeE
Q 007229 50 LHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFV 129 (612)
Q Consensus 50 ~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i 129 (612)
+..+.+.+|.+.|++++|+|+|++||+++.||.|+|||+.+++ ....+..|...|.+++|+|++++|++++.++ .+
T Consensus 4 ~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i 79 (814)
T 3mkq_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQV-EVRSIQVTETPVRAGKFIARKNWIIVGSDDF---RI 79 (814)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE-EEEEEECCSSCEEEEEEEGGGTEEEEEETTS---EE
T ss_pred ccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCc-eEEEEecCCCcEEEEEEeCCCCEEEEEeCCC---eE
Confidence 4566789999999999999999999999999999999999987 5568889999999999999999999999987 68
Q ss_pred EEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCC-eeeecccccccceEEEEECC-CCCeEEE
Q 007229 130 RAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPF-KFKLSHREHSNFVNCIRFSP-DGSKLIS 207 (612)
Q Consensus 130 ~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~-~~~~l~~ 207 (612)
.+|++++++.+..+.+|...|++++|+|+++ .+++++.||.|++||+.++ .....+.+|...|.+++|+| +++.|++
T Consensus 80 ~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~ 158 (814)
T 3mkq_A 80 RVFNYNTGEKVVDFEAHPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFAS 158 (814)
T ss_dssp EEEETTTCCEEEEEECCSSCEEEEEECSSSS-EEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEE
T ss_pred EEEECCCCcEEEEEecCCCCEEEEEEeCCCC-EEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEE
Confidence 8899899999999999999999999999999 5999999999999999887 66777889999999999999 8899999
Q ss_pred EEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEec--CCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCcccc
Q 007229 208 VSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSP--DGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAV 285 (612)
Q Consensus 208 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 285 (612)
++.||.|++||+.+++....+. ..+...+..++|+| +++++++++.||.|++||+ .+++.+..
T Consensus 159 ~~~dg~v~vwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~----~~~~~~~~--------- 223 (814)
T 3mkq_A 159 GCLDRTVKVWSLGQSTPNFTLT--TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDY----QTKSCVAT--------- 223 (814)
T ss_dssp EETTSEEEEEETTCSSCSEEEE--CCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEET----TTTEEEEE---------
T ss_pred EeCCCeEEEEECCCCcceeEEe--cCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEEC----CCCcEEEE---------
Confidence 9999999999999888777763 24558899999999 9999999999999999998 66555433
Q ss_pred ceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeee
Q 007229 286 EDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKL 365 (612)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~ 365 (612)
+.+|...+.+++|++. +..+++++.||.|++||+.++.....
T Consensus 224 -------------------------------------~~~~~~~v~~~~~~~~-~~~l~~~~~dg~v~vwd~~~~~~~~~ 265 (814)
T 3mkq_A 224 -------------------------------------LEGHMSNVSFAVFHPT-LPIIISGSEDGTLKIWNSSTYKVEKT 265 (814)
T ss_dssp -------------------------------------EECCSSCEEEEEECSS-SSEEEEEETTSCEEEEETTTCSEEEE
T ss_pred -------------------------------------EcCCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCcEEEE
Confidence 3457788999999842 77999999999999999999888887
Q ss_pred ceecccceEEEEee--cc-EEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeeccc
Q 007229 366 EKKYDARIKCLAAV--EE-VIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLK 442 (612)
Q Consensus 366 ~~~~~~~i~~~~~~--~~-~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (612)
...+...+.++++. +. .+++.+.++.+.+|++....
T Consensus 266 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------- 304 (814)
T 3mkq_A 266 LNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDE----------------------------------------- 304 (814)
T ss_dssp ECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCS-----------------------------------------
T ss_pred eecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCC-----------------------------------------
Confidence 77788899999983 32 24666667778888875543
Q ss_pred ceeeecccceEEEEEEccCCCeEEEEecCCe---EEE------EEccCccc--ccceeeccccCceEEEEEcCCCcEEEE
Q 007229 443 VMSKIDLGFTVTACAIAPDGSEAIVGGQNGK---LHI------YSISGNTL--TEEMVLEKHRGAITVIQYSPDVSMFAS 511 (612)
Q Consensus 443 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~---v~i------~d~~~~~~--~~~~~~~~~~~~i~~~~~s~~~~~l~~ 511 (612)
..++++|+++.+++++.+.. +.. |++..+.. .....+..+...+.+++|+|+|+++++
T Consensus 305 -----------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~ 373 (814)
T 3mkq_A 305 -----------PTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTV 373 (814)
T ss_dssp -----------CCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEE
T ss_pred -----------ceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEE
Confidence 23678888888888766542 221 22222222 112334566778999999999999999
Q ss_pred EcCCCeEEEEecCCcceeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeecccccCeeeEEEe-
Q 007229 512 ADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFM- 590 (612)
Q Consensus 512 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~- 590 (612)
++ |+.+.+|++...... +.+.+.+++|+||+++||+++.++.|++|+.. .+|...+..+.|+
T Consensus 374 ~~-~~~~~i~~~~~~~~~------~~~~i~~~~~spdg~~la~~~~~g~v~l~~~~----------~~~~~~v~~~~~s~ 436 (814)
T 3mkq_A 374 VG-DGEYVIYTALAWRNK------AFGKCQDFVWGPDSNSYALIDETGQIKYYKNF----------KEVTSWSVPMHSAI 436 (814)
T ss_dssp EE-TTEEEEEETTTTEEE------EEEECSEEEECTTSSCEEEECTTCCEEEEETT----------EECTTCCCCCSSCC
T ss_pred ec-CCEEEEEECcccccc------CCCceEEEEEeCCCCeEEEEeCCCcEEEEECC----------CCccceEEcCCcCc
Confidence 98 899999998654432 45789999999999999999999999999632 3577788999999
Q ss_pred cC---ceEEEccCCCeEEEEEecc
Q 007229 591 DD---FNVVSSGEDACIRVWRLAT 611 (612)
Q Consensus 591 ~~---~~l~s~~~d~~i~~w~~~~ 611 (612)
++ +.|++++.|+.|++||+++
T Consensus 437 dg~~~~~l~~~~~d~~v~~~d~~~ 460 (814)
T 3mkq_A 437 DRLFSGALLGVKSDGFVYFFDWDN 460 (814)
T ss_dssp CEEECSSSEEEEETTEEEEECTTT
T ss_pred cceecceEEEEecCCEEEEEECCc
Confidence 55 5899999999999999875
No 13
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1e-46 Score=350.25 Aligned_cols=292 Identities=15% Similarity=0.267 Sum_probs=258.5
Q ss_pred CceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeee
Q 007229 49 PLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSF 128 (612)
Q Consensus 49 ~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~ 128 (612)
.+....+.+|.+.|++++|+||+++||+|+.||+|+|||+.+++ ....+..|...|.+++|+|++++|++++.++ .
T Consensus 45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~---~ 120 (340)
T 1got_B 45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTN-KVHAIPLRSSWVMTCAYAPSGNYVACGGLDN---I 120 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCC-EEEEEECSSSCEEEEEECTTSSEEEEEETTC---E
T ss_pred chhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCC-cceEeecCCccEEEEEECCCCCEEEEEeCCC---e
Confidence 34567789999999999999999999999999999999999988 4557888999999999999999999999988 5
Q ss_pred EEEEEecCC----ceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCe
Q 007229 129 VRAFMWDSG----TTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSK 204 (612)
Q Consensus 129 i~i~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 204 (612)
+++|+..++ +....+.+|...|.++.|+|++. +++++.|++|++||+.+++.+..+.+|...|.+++|+|++++
T Consensus 121 v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 198 (340)
T 1got_B 121 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ--IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRL 198 (340)
T ss_dssp EEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE--EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE
T ss_pred EEEEECccCCCcceeEEEecCCCccEEEEEECCCCc--EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCE
Confidence 677777654 35667889999999999999874 899999999999999999999999999999999999999999
Q ss_pred EEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccc
Q 007229 205 LISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNA 284 (612)
Q Consensus 205 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 284 (612)
+++++.|+.|++||+++++....+ .+|...|.+++|+|++++|++++.||.|++||+ ..++.+..+...
T Consensus 199 l~sg~~d~~v~~wd~~~~~~~~~~---~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~----~~~~~~~~~~~~---- 267 (340)
T 1got_B 199 FVSGACDASAKLWDVREGMCRQTF---TGHESDINAICFFPNGNAFATGSDDATCRLFDL----RADQELMTYSHD---- 267 (340)
T ss_dssp EEEEETTSCEEEEETTTCSEEEEE---CCCSSCEEEEEECTTSSEEEEEETTSCEEEEET----TTTEEEEEECCT----
T ss_pred EEEEeCCCcEEEEECCCCeeEEEE---cCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEEC----CCCcEEEEEccC----
Confidence 999999999999999999988888 489999999999999999999999999999998 433322211100
Q ss_pred cceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeee
Q 007229 285 VEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSK 364 (612)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~ 364 (612)
+
T Consensus 268 -----------------------------------------------------------------~-------------- 268 (340)
T 1got_B 268 -----------------------------------------------------------------N-------------- 268 (340)
T ss_dssp -----------------------------------------------------------------T--------------
T ss_pred -----------------------------------------------------------------C--------------
Confidence 0
Q ss_pred eceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccce
Q 007229 365 LEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVM 444 (612)
Q Consensus 365 ~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (612)
T Consensus 269 -------------------------------------------------------------------------------- 268 (340)
T 1got_B 269 -------------------------------------------------------------------------------- 268 (340)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEe
Q 007229 445 SKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWD 522 (612)
Q Consensus 445 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd 522 (612)
+...+++++|+|++++|++|+.||.|++||+.+++. ...+.+|.++|.+++|+|++++|++++.|++|++||
T Consensus 269 ----~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~--~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 269 ----IICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADR--AGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp ----CCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE--EEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred ----cccceEEEEECCCCCEEEEECCCCeEEEEEcccCcE--eeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 011478899999999999999999999999988776 677889999999999999999999999999999997
No 14
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.1e-47 Score=365.88 Aligned_cols=290 Identities=21% Similarity=0.344 Sum_probs=259.7
Q ss_pred eeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEe
Q 007229 139 TVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYD 218 (612)
Q Consensus 139 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd 218 (612)
....+.+|..+|++++|+|+++ ++++|+.||+|++||+.+++....+.+|...|.+++|+|++++|++|+.|++|++||
T Consensus 100 ~~~~l~gh~~~V~~~~~~p~~~-~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd 178 (410)
T 1vyh_C 100 EKYALSGHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWD 178 (410)
T ss_dssp CSCEEECCSSCEEEEEECSSSS-EEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEE
T ss_pred ceEeecccCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEe
Confidence 3556789999999999999999 599999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCE
Q 007229 219 GKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDH 298 (612)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (612)
+.+++.+..+ .+|...|.+++|+|++++|++++.|+.|++||+ .++.++..+..
T Consensus 179 ~~~~~~~~~~---~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~----~~~~~~~~~~~------------------- 232 (410)
T 1vyh_C 179 FQGFECIRTM---HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV----QTGYCVKTFTG------------------- 232 (410)
T ss_dssp TTSSCEEECC---CCCSSCEEEEEECSSSSEEEEEETTSEEEEEET----TTCCEEEEEEC-------------------
T ss_pred CCCCceeEEE---cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEC----CCCcEEEEEeC-------------------
Confidence 9999988887 489999999999999999999999999999998 44433322211
Q ss_pred EEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEe
Q 007229 299 LITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAA 378 (612)
Q Consensus 299 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~ 378 (612)
|
T Consensus 233 ---------------------------h---------------------------------------------------- 233 (410)
T 1vyh_C 233 ---------------------------H---------------------------------------------------- 233 (410)
T ss_dssp ---------------------------C----------------------------------------------------
T ss_pred ---------------------------C----------------------------------------------------
Confidence 1
Q ss_pred eccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEE
Q 007229 379 VEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAI 458 (612)
Q Consensus 379 ~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 458 (612)
...+.++++
T Consensus 234 -----------------------------------------------------------------------~~~v~~~~~ 242 (410)
T 1vyh_C 234 -----------------------------------------------------------------------REWVRMVRP 242 (410)
T ss_dssp -----------------------------------------------------------------------SSCEEEEEE
T ss_pred -----------------------------------------------------------------------CccEEEEEE
Confidence 123667889
Q ss_pred ccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCC--------------------CcEEEEEcCCCeE
Q 007229 459 APDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPD--------------------VSMFASADGNREA 518 (612)
Q Consensus 459 s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~--------------------~~~l~~~~~d~~i 518 (612)
+|++++|++|+.|+.|++||+.+++. ...+.+|...|.+++|+|+ +.+|++++.|+.|
T Consensus 243 ~~~g~~l~s~s~D~~v~vwd~~~~~~--~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i 320 (410)
T 1vyh_C 243 NQDGTLIASCSNDQTVRVWVVATKEC--KAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTI 320 (410)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTCCE--EEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEE
T ss_pred CCCCCEEEEEcCCCeEEEEECCCCce--eeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeE
Confidence 99999999999999999999988876 5678899999999999996 6789999999999
Q ss_pred EEEecCCcceeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeecccccCeeeEEEe-cCceEEE
Q 007229 519 IVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFM-DDFNVVS 597 (612)
Q Consensus 519 ~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s 597 (612)
++||+.+++.+ ..+.+|...|++++|+|++++|++|+.|+.|++||+.+ + +++..+.+|...|++++|+ ++.+|++
T Consensus 321 ~iwd~~~~~~~-~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~-~-~~~~~~~~h~~~v~~l~~~~~~~~l~s 397 (410)
T 1vyh_C 321 KMWDVSTGMCL-MTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKN-K-RCMKTLNAHEHFVTSLDFHKTAPYVVT 397 (410)
T ss_dssp EEEETTTTEEE-EEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTT-S-CCCEEEECCSSCEEEEEECSSSSCEEE
T ss_pred EEEECCCCceE-EEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-C-ceEEEEcCCCCcEEEEEEcCCCCEEEE
Confidence 99999999887 55778999999999999999999999999999999987 6 7888899999999999999 8889999
Q ss_pred ccCCCeEEEEEec
Q 007229 598 SGEDACIRVWRLA 610 (612)
Q Consensus 598 ~~~d~~i~~w~~~ 610 (612)
++.||+|++|++.
T Consensus 398 gs~D~~i~vW~~r 410 (410)
T 1vyh_C 398 GSVDQTVKVWECR 410 (410)
T ss_dssp EETTSEEEEEC--
T ss_pred EeCCCcEEEEeCC
Confidence 9999999999863
No 15
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.2e-47 Score=352.16 Aligned_cols=291 Identities=20% Similarity=0.300 Sum_probs=255.4
Q ss_pred ceeeeeccCCceEEEEEEcCC----CCEEEEEeecCCeEEEEeCCCCee--eecccccccceEEEEECCCCCeEEEEEcC
Q 007229 138 TTVGDFDGHSRRVLSCEFKPT----RPFRIATCGEDFLVNFYEGPPFKF--KLSHREHSNFVNCIRFSPDGSKLISVSSD 211 (612)
Q Consensus 138 ~~~~~~~~~~~~v~~~~~~~~----~~~~l~~~~~d~~i~~wd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 211 (612)
.....+.+|.+.|.+++|+|+ +. +|++|+.|++|++|++...+. ...+.+|...|.+++|+|++.++++++.|
T Consensus 23 ~~~~~~~~H~~~V~~v~~~~~~~~~~~-~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D 101 (321)
T 3ow8_A 23 ILFKQEQAHDDAIWSVAWGTNKKENSE-TVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLD 101 (321)
T ss_dssp EEEEETTSSSSCEEEEEEC-------C-EEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETT
T ss_pred heeeecccCCCcEEEEEEecCCCCCCC-EEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCC
Confidence 345567899999999999985 44 699999999999999877654 44688999999999999999999999999
Q ss_pred CcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeee
Q 007229 212 RKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVG 291 (612)
Q Consensus 212 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (612)
++|++||+++++.+..+. .+...+.+++|+|++++|++++.||.+++|++ .+++....+..
T Consensus 102 ~~i~lWd~~~~~~~~~~~---~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~----~~~~~~~~~~~------------ 162 (321)
T 3ow8_A 102 AHIRLWDLENGKQIKSID---AGPVDAWTLAFSPDSQYLATGTHVGKVNIFGV----ESGKKEYSLDT------------ 162 (321)
T ss_dssp SEEEEEETTTTEEEEEEE---CCTTCCCCEEECTTSSEEEEECTTSEEEEEET----TTCSEEEEEEC------------
T ss_pred CcEEEEECCCCCEEEEEe---CCCccEEEEEECCCCCEEEEEcCCCcEEEEEc----CCCceeEEecC------------
Confidence 999999999999888873 67788999999999999999999999999998 33322111100
Q ss_pred eeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceeccc
Q 007229 292 CLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDA 371 (612)
Q Consensus 292 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~ 371 (612)
T Consensus 163 -------------------------------------------------------------------------------- 162 (321)
T 3ow8_A 163 -------------------------------------------------------------------------------- 162 (321)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccc
Q 007229 372 RIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGF 451 (612)
Q Consensus 372 ~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (612)
+..
T Consensus 163 -----------------------------------------------------------------------------~~~ 165 (321)
T 3ow8_A 163 -----------------------------------------------------------------------------RGK 165 (321)
T ss_dssp -----------------------------------------------------------------------------SSS
T ss_pred -----------------------------------------------------------------------------CCc
Confidence 012
Q ss_pred eEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeee
Q 007229 452 TVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLN 531 (612)
Q Consensus 452 ~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 531 (612)
.+.+++|+|++++|++|+.||.|++||+.+++. ...+.+|..+|++++|+|++++|++++.|+.|++||+++++.. .
T Consensus 166 ~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~--~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~-~ 242 (321)
T 3ow8_A 166 FILSIAYSPDGKYLASGAIDGIINIFDIATGKL--LHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLA-G 242 (321)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTTEE--EEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEE-E
T ss_pred eEEEEEECCCCCEEEEEcCCCeEEEEECCCCcE--EEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCccee-E
Confidence 377899999999999999999999999998876 6778899999999999999999999999999999999998876 5
Q ss_pred cccccccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeecccccCeeeEEEe-cCceEEEccCCCeEEEEEec
Q 007229 532 NMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFM-DDFNVVSSGEDACIRVWRLA 610 (612)
Q Consensus 532 ~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~~~d~~i~~w~~~ 610 (612)
.+.+|...|.+++|+|++++|++++.|++|++||+.+ + +++..+.+|.+.|.+++|+ ++++|++++.||.|++||+.
T Consensus 243 ~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~-~-~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 243 TLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGT-R-TCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-T-EEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred EEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCC-C-EEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 6788999999999999999999999999999999998 6 7888999999999999999 88999999999999999974
No 16
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=4.3e-47 Score=361.74 Aligned_cols=310 Identities=17% Similarity=0.263 Sum_probs=267.1
Q ss_pred eeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEE
Q 007229 52 VEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRA 131 (612)
Q Consensus 52 ~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i 131 (612)
...+.+|..+|++++|+|++++||+|+.||+|+|||+.+++ ....+.+|...|.+++|+|++++|++++.++ .+++
T Consensus 101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~-~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~---~i~i 176 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGD-FERTLKGHTDSVQDISFDHSGKLLASCSADM---TIKL 176 (410)
T ss_dssp SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCC-CCEEECCCSSCEEEEEECTTSSEEEEEETTS---CCCE
T ss_pred eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-EEEEEeccCCcEEEEEEcCCCCEEEEEeCCC---eEEE
Confidence 45578999999999999999999999999999999999988 5568899999999999999999999999998 5788
Q ss_pred EEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcC
Q 007229 132 FMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSD 211 (612)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 211 (612)
|+.++++.+..+.+|...|.+++|+|+++ .+++|+.|++|++||+.++.++..+.+|...|.++.|+|++++|++++.|
T Consensus 177 wd~~~~~~~~~~~~h~~~V~~v~~~p~~~-~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D 255 (410)
T 1vyh_C 177 WDFQGFECIRTMHGHDHNVSSVSIMPNGD-HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSND 255 (410)
T ss_dssp EETTSSCEEECCCCCSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred EeCCCCceeEEEcCCCCCEEEEEEeCCCC-EEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCC
Confidence 88889999999999999999999999999 59999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeee
Q 007229 212 RKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVG 291 (612)
Q Consensus 212 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (612)
+.|++||+.+++....+ .+|...|.+++|+|++.+.......+. ...
T Consensus 256 ~~v~vwd~~~~~~~~~~---~~h~~~v~~~~~~~~~~~~~~~~~~~~--------------~~~---------------- 302 (410)
T 1vyh_C 256 QTVRVWVVATKECKAEL---REHRHVVECISWAPESSYSSISEATGS--------------ETK---------------- 302 (410)
T ss_dssp SCEEEEETTTCCEEEEE---CCCSSCEEEEEECCSCGGGGGGGCCSC--------------C------------------
T ss_pred CeEEEEECCCCceeeEe---cCCCceEEEEEEcCcccccchhhhccc--------------ccc----------------
Confidence 99999999999988887 489999999999998754211110000 000
Q ss_pred eeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceeccc
Q 007229 292 CLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDA 371 (612)
Q Consensus 292 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~ 371 (612)
.....+.++++|+.|+.|++||+.++........
T Consensus 303 -------------------------------------------~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~--- 336 (410)
T 1vyh_C 303 -------------------------------------------KSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVG--- 336 (410)
T ss_dssp ------------------------------------------------CCEEEEEETTSEEEEEETTTTEEEEEEEC---
T ss_pred -------------------------------------------ccCCCCCEEEEEeCCCeEEEEECCCCceEEEEEC---
Confidence 0000167899999999999999887654333221
Q ss_pred ceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccc
Q 007229 372 RIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGF 451 (612)
Q Consensus 372 ~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (612)
|..
T Consensus 337 -----------------------------------------------------------------------------h~~ 339 (410)
T 1vyh_C 337 -----------------------------------------------------------------------------HDN 339 (410)
T ss_dssp -----------------------------------------------------------------------------CSS
T ss_pred -----------------------------------------------------------------------------CCC
Confidence 334
Q ss_pred eEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecC
Q 007229 452 TVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRV 524 (612)
Q Consensus 452 ~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~ 524 (612)
.|++++|+|++++|++|+.||.|++||+.+++. ...+.+|...|++++|+|++++|++|+.|++|++|+++
T Consensus 340 ~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~--~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 340 WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRC--MKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp CEEEEEECSSSSCEEEEETTTEEEEECCTTSCC--CEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCce--EEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 588999999999999999999999999988876 67888999999999999999999999999999999863
No 17
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.6e-47 Score=357.01 Aligned_cols=323 Identities=16% Similarity=0.166 Sum_probs=229.7
Q ss_pred eEEEEccCCCEEEEecCCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeC------cCeEEEeecCCCceee
Q 007229 22 ILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADV------SGSVRIWGTHNGFVLK 95 (612)
Q Consensus 22 ~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~------d~~i~iwd~~~~~~~~ 95 (612)
..+.+.+++.++...++.....|++.... ...|+..|++++|||||++||+++. |+.|++|+..++....
T Consensus 9 sg~d~g~~~~~~~~~g~~~~~~w~~p~~~----p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~ 84 (357)
T 4g56_B 9 SGVDLGTENLYFQSNGSSKGSAWGRPVTA----PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNE 84 (357)
T ss_dssp -----------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CG
T ss_pred cCCCCCccceEEecCCCccccccCCCCCC----cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcce
Confidence 45667777877777667888999986433 3579999999999999999999997 5566666665553211
Q ss_pred eeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEE
Q 007229 96 NEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFY 175 (612)
Q Consensus 96 ~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~w 175 (612)
.......+|...|.+++|+|++. +++++.||+|++|
T Consensus 85 ------------------------------------------~~~~~~~~~~~~V~~~~~s~d~~--~l~~s~dg~v~lW 120 (357)
T 4g56_B 85 ------------------------------------------SLCTAGVQTEAGVTDVAWVSEKG--ILVASDSGAVELW 120 (357)
T ss_dssp ------------------------------------------GGCSEEEECSSCEEEEEEETTTE--EEEEETTSCEEEC
T ss_pred ------------------------------------------eEecccCCCCCCEEEEEEcCCCC--EEEEECCCEEEEe
Confidence 01112235777788888888874 6678889999999
Q ss_pred eCCCCeeeec----ccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCC-EE
Q 007229 176 EGPPFKFKLS----HREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGK-KV 250 (612)
Q Consensus 176 d~~~~~~~~~----~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l 250 (612)
|+.+++.... ..+|...|.+++|+|++++|++++.|+.|++||+++++.+..+ .+|...|.+++|+|++. ++
T Consensus 121 d~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~---~~h~~~v~~v~~s~~~~~~~ 197 (357)
T 4g56_B 121 EILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSY---NAHSSEVNCVAACPGKDTIF 197 (357)
T ss_dssp --------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEE---CCCSSCEEEEEECTTCSSCE
T ss_pred eccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEE---cCCCCCEEEEEEccCCCcee
Confidence 9988775543 3479999999999999999999999999999999999998888 48999999999999875 78
Q ss_pred EEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccce
Q 007229 251 LTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNV 330 (612)
Q Consensus 251 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v 330 (612)
++++.||.|++||+ .+++....+...
T Consensus 198 ~s~~~dg~v~~wd~----~~~~~~~~~~~~-------------------------------------------------- 223 (357)
T 4g56_B 198 LSCGEDGRILLWDT----RKPKPATRIDFC-------------------------------------------------- 223 (357)
T ss_dssp EEEETTSCEEECCT----TSSSCBCBCCCT--------------------------------------------------
T ss_pred eeeccCCceEEEEC----CCCceeeeeeec--------------------------------------------------
Confidence 89999999999998 443322111100
Q ss_pred eEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceecc
Q 007229 331 STLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDV 410 (612)
Q Consensus 331 ~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~ 410 (612)
T Consensus 224 -------------------------------------------------------------------------------- 223 (357)
T 4g56_B 224 -------------------------------------------------------------------------------- 223 (357)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccC-CCeEEEEecCCeEEEEEccCccccccee
Q 007229 411 GSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPD-GSEAIVGGQNGKLHIYSISGNTLTEEMV 489 (612)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~v~i~d~~~~~~~~~~~ 489 (612)
.+...+++++|+|+ +.+|++|+.|+.|++||+.+++. ...
T Consensus 224 -------------------------------------~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~--~~~ 264 (357)
T 4g56_B 224 -------------------------------------ASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDS--AQT 264 (357)
T ss_dssp -------------------------------------TCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGG--CEE
T ss_pred -------------------------------------cccccccchhhhhcccceEEEeecccceeEEECCCCcE--eEE
Confidence 01124678899997 46788999999999999998876 678
Q ss_pred eccccCceEEEEEcCCC-cEEEEEcCCCeEEEEecCCcceeeecccccccceeEEEecC-CCcEEEEeecCcEEEEEEcc
Q 007229 490 LEKHRGAITVIQYSPDV-SMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSP-SSTMVATGSIDTCVIIYEIG 567 (612)
Q Consensus 490 ~~~~~~~i~~~~~s~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~s~~~d~~i~iwd~~ 567 (612)
+.+|...|++++|+|++ ++||+++.|++|+|||+++++.+ . ..+|...|++++|+| |+++|++++.|++|++|++.
T Consensus 265 ~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~-~-~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~ 342 (357)
T 4g56_B 265 SAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVF-R-DLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLP 342 (357)
T ss_dssp ECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEE-E-ECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC
T ss_pred EeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEe-E-ECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECC
Confidence 88999999999999987 68999999999999999999876 3 346999999999998 89999999999999999998
Q ss_pred CCC
Q 007229 568 KPA 570 (612)
Q Consensus 568 ~~~ 570 (612)
..+
T Consensus 343 ~~~ 345 (357)
T 4g56_B 343 SEG 345 (357)
T ss_dssp ---
T ss_pred CCC
Confidence 744
No 18
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.9e-46 Score=344.19 Aligned_cols=293 Identities=18% Similarity=0.263 Sum_probs=258.8
Q ss_pred ceeeEeccCCCceEEEEECCC----CCEEEEeeCcCeEEEeecCCCce-eeeeeeecCCCeEEEEECCCCCEEEEEeCCC
Q 007229 50 LHVEFYGEHGYPVTVARYSPN----GEWIASADVSGSVRIWGTHNGFV-LKNEFKVLSGRIDDLQWSPDGLRIVACGDGK 124 (612)
Q Consensus 50 ~~~~~~~~h~~~v~~~~~s~d----~~~las~~~d~~i~iwd~~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~ 124 (612)
...+.+.+|.+.|.+++|+|+ +++||+|+.|++|+|||+.+++. +...+.+|...|.+++|+|++..+++++.++
T Consensus 23 ~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~ 102 (321)
T 3ow8_A 23 ILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDA 102 (321)
T ss_dssp EEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTS
T ss_pred heeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCC
Confidence 334557799999999999985 67999999999999999987753 3446789999999999999999999999998
Q ss_pred CeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCe
Q 007229 125 GKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSK 204 (612)
Q Consensus 125 ~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 204 (612)
.+++|+..+++.+..+..|...+.+++|+|+++ .|++++.|+.|++|++++++....+..|...|.+++|+|++++
T Consensus 103 ---~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~-~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~ 178 (321)
T 3ow8_A 103 ---HIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQ-YLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKY 178 (321)
T ss_dssp ---EEEEEETTTTEEEEEEECCTTCCCCEEECTTSS-EEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSE
T ss_pred ---cEEEEECCCCCEEEEEeCCCccEEEEEECCCCC-EEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCE
Confidence 678888889999999999999999999999999 5999999999999999999999899999999999999999999
Q ss_pred EEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccc
Q 007229 205 LISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNA 284 (612)
Q Consensus 205 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 284 (612)
|++++.|+.|++||+++++.+..+ .+|..+|.+++|+|++++|++++.|+.|++||+ ..++....+.
T Consensus 179 lasg~~dg~i~iwd~~~~~~~~~~---~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~----~~~~~~~~~~------ 245 (321)
T 3ow8_A 179 LASGAIDGIINIFDIATGKLLHTL---EGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDV----QHANLAGTLS------ 245 (321)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEE---CCCSSCCCEEEECTTSCEEEEECTTSCEEEEET----TTCCEEEEEC------
T ss_pred EEEEcCCCeEEEEECCCCcEEEEE---cccCCceeEEEEcCCCCEEEEEcCCCeEEEEEC----CCcceeEEEc------
Confidence 999999999999999999988888 489999999999999999999999999999998 3332221110
Q ss_pred cceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeee
Q 007229 285 VEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSK 364 (612)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~ 364 (612)
+
T Consensus 246 ----------------------------------------~--------------------------------------- 246 (321)
T 3ow8_A 246 ----------------------------------------G--------------------------------------- 246 (321)
T ss_dssp ----------------------------------------C---------------------------------------
T ss_pred ----------------------------------------C---------------------------------------
Confidence 0
Q ss_pred eceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccce
Q 007229 365 LEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVM 444 (612)
Q Consensus 365 ~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (612)
T Consensus 247 -------------------------------------------------------------------------------- 246 (321)
T 3ow8_A 247 -------------------------------------------------------------------------------- 246 (321)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecC
Q 007229 445 SKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRV 524 (612)
Q Consensus 445 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~ 524 (612)
|...|.+++|+|++++|++++.|+.|++||+.+++. ...+.+|.+.|.+++|+|++++|++++.|++|++||..
T Consensus 247 ----h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~--~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 247 ----HASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTC--VHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp ----CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE--EEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred ----CCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEE--EEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 122477899999999999999999999999998876 67788999999999999999999999999999999963
No 19
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=8.5e-46 Score=345.31 Aligned_cols=292 Identities=17% Similarity=0.335 Sum_probs=255.8
Q ss_pred ceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeE
Q 007229 50 LHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFV 129 (612)
Q Consensus 50 ~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i 129 (612)
+..+.+.+|...|++++|+||+++||+|+.||+|+|||..+++ ....+..|...|.+++|+|+|++|++++.++ .+
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~-~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~---~i 130 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTN-KEHAVTMPCTWVMACAYAPSGCAIACGGLDN---KC 130 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC-EEEEEECSSSCCCEEEECTTSSEEEEESTTS---EE
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCC-cceEEecCCCCEEEEEECCCCCEEEEeeCCC---CE
Confidence 4567789999999999999999999999999999999999887 4457788999999999999999999999998 56
Q ss_pred EEEEecCC------ceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECC--C
Q 007229 130 RAFMWDSG------TTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSP--D 201 (612)
Q Consensus 130 ~i~~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~--~ 201 (612)
.+|.+... .....+.+|...|.+++|+|++. .+++++.|++|++||+++++.+..+.+|...|.+++|+| +
T Consensus 131 ~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~ 209 (354)
T 2pbi_B 131 SVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDM-QILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSET 209 (354)
T ss_dssp EEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSS
T ss_pred EEEEEeccccccccccceeeeccCCcEEEEEEeCCCC-EEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCC
Confidence 77776532 35667788999999999999998 599999999999999999999999999999999999988 5
Q ss_pred CCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccC
Q 007229 202 GSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASST 281 (612)
Q Consensus 202 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 281 (612)
+++|++++.||.|++||+++++.+..+ ..|...|.+++|+|++++|++++.|++|++||+ ...+.+..+...
T Consensus 210 g~~l~sgs~Dg~v~~wd~~~~~~~~~~---~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~----~~~~~~~~~~~~- 281 (354)
T 2pbi_B 210 GNTFVSGGCDKKAMVWDMRSGQCVQAF---ETHESDVNSVRYYPSGDAFASGSDDATCRLYDL----RADREVAIYSKE- 281 (354)
T ss_dssp CCEEEEEETTSCEEEEETTTCCEEEEE---CCCSSCEEEEEECTTSSEEEEEETTSCEEEEET----TTTEEEEEECCT-
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEe---cCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEEC----CCCcEEEEEcCC-
Confidence 689999999999999999999998887 489999999999999999999999999999998 332221111000
Q ss_pred ccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCce
Q 007229 282 SNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGY 361 (612)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~ 361 (612)
.
T Consensus 282 ----------------------------------------------------------~--------------------- 282 (354)
T 2pbi_B 282 ----------------------------------------------------------S--------------------- 282 (354)
T ss_dssp ----------------------------------------------------------T---------------------
T ss_pred ----------------------------------------------------------C---------------------
Confidence 0
Q ss_pred eeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecc
Q 007229 362 SSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSL 441 (612)
Q Consensus 362 ~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (612)
T Consensus 283 -------------------------------------------------------------------------------- 282 (354)
T 2pbi_B 283 -------------------------------------------------------------------------------- 282 (354)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEE
Q 007229 442 KVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVW 521 (612)
Q Consensus 442 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw 521 (612)
....+.+++|+|++++|++|+.|+.|++||+.+++. ...+.+|.+.|++++|+|++++|++++.|++|++|
T Consensus 283 -------~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~--~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW 353 (354)
T 2pbi_B 283 -------IIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSR--VSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353 (354)
T ss_dssp -------CCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSE--EEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEE
T ss_pred -------cccceeEEEEeCCCCEEEEEECCCcEEEEECCCCce--EEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEec
Confidence 001367899999999999999999999999988876 57788999999999999999999999999999999
Q ss_pred e
Q 007229 522 D 522 (612)
Q Consensus 522 d 522 (612)
+
T Consensus 354 ~ 354 (354)
T 2pbi_B 354 A 354 (354)
T ss_dssp C
T ss_pred C
Confidence 6
No 20
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=6.1e-46 Score=339.08 Aligned_cols=295 Identities=19% Similarity=0.273 Sum_probs=253.9
Q ss_pred ceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEE
Q 007229 138 TTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIY 217 (612)
Q Consensus 138 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw 217 (612)
+....+.+|.+.|.+++|+|+++ ++++++.||.|++||+.+++.+..+..|..+|.+++|+|++++|++++.|++|++|
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~-~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vw 82 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEP-WVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF 82 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSS-EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred eeEEeecCCCCceEEEEECCCCC-EEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEE
Confidence 34567889999999999999999 59999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCC
Q 007229 218 DGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQND 297 (612)
Q Consensus 218 d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (612)
|+.+++.+..+ .+|...|.+++|+|++++|++++.||+|++||+ .++...
T Consensus 83 d~~~~~~~~~~---~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~----~~~~~~----------------------- 132 (304)
T 2ynn_A 83 NYNTGEKVVDF---EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW----ENNWAL----------------------- 132 (304)
T ss_dssp ETTTCCEEEEE---ECCSSCEEEEEECSSSSEEEEEETTSCEEEEEG----GGTTEE-----------------------
T ss_pred ECCCCcEEEEE---eCCCCcEEEEEEcCCCCEEEEECCCCeEEEEEC----CCCcch-----------------------
Confidence 99999998888 489999999999999999999999999999998 433211
Q ss_pred EEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEE
Q 007229 298 HLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLA 377 (612)
Q Consensus 298 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~ 377 (612)
...+.+|...|.+++|++.++..+++|+.|+.|++||+..........
T Consensus 133 ----------------------~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~---------- 180 (304)
T 2ynn_A 133 ----------------------EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT---------- 180 (304)
T ss_dssp ----------------------EEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEE----------
T ss_pred ----------------------hhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceec----------
Confidence 134567899999999996567899999999999999987544321110
Q ss_pred eeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEE
Q 007229 378 AVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACA 457 (612)
Q Consensus 378 ~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 457 (612)
..+...+..++
T Consensus 181 ---------------------------------------------------------------------~~~~~~v~~~~ 191 (304)
T 2ynn_A 181 ---------------------------------------------------------------------TGQERGVNYVD 191 (304)
T ss_dssp ---------------------------------------------------------------------CCCTTCEEEEE
T ss_pred ---------------------------------------------------------------------cCCcCcEEEEE
Confidence 01123467777
Q ss_pred Ecc--CCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccc
Q 007229 458 IAP--DGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLF 535 (612)
Q Consensus 458 ~s~--~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 535 (612)
++| ++++|++|+.|+.|++||+++++. ...+.+|...|.+++|+|++++|++++.||+|++||+.+++.+ ..+..
T Consensus 192 ~~~~~~~~~l~s~s~D~~i~iWd~~~~~~--~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~-~~~~~ 268 (304)
T 2ynn_A 192 YYPLPDKPYMITASDDLTIKIWDYQTKSC--VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVE-KTLNV 268 (304)
T ss_dssp ECCSTTCCEEEEEETTSEEEEEETTTTEE--EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEE-EEECC
T ss_pred EEEcCCCCEEEEEcCCCeEEEEeCCCCcc--ceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCcee-eeccC
Confidence 876 788999999999999999998876 6788999999999999999999999999999999999999887 56777
Q ss_pred cccceeEEEecCCCc--EEEEeecCcEEEEEEccC
Q 007229 536 HTARINCLAWSPSST--MVATGSIDTCVIIYEIGK 568 (612)
Q Consensus 536 ~~~~i~~~~~s~~~~--~l~s~~~d~~i~iwd~~~ 568 (612)
|...+.+++|+|++. ++|+|+.|| +.+|++..
T Consensus 269 ~~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~~~~ 302 (304)
T 2ynn_A 269 GLERSWCIATHPTGRKNYIASGFDNG-FTVLSLGN 302 (304)
T ss_dssp SSSSEEEEEECTTCGGGCEEEEETTE-EEEEECC-
T ss_pred CCccEEEEEECCCCCceEEEEecCCc-eEEEEecc
Confidence 889999999999875 577777666 88888765
No 21
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=4e-47 Score=358.61 Aligned_cols=316 Identities=19% Similarity=0.315 Sum_probs=267.4
Q ss_pred CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEE
Q 007229 38 GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRI 117 (612)
Q Consensus 38 ~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 117 (612)
+..+..|+..+..+.+.+.+|.+.|++++|+|++++||+|+.||+|+|||+.+++ ....+..|...|.+++|+|+|++|
T Consensus 45 ~~~~~~~~~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~-~~~~~~~h~~~v~~~~~s~~g~~l 123 (380)
T 3iz6_a 45 GRTAVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQ-KTHAIKLHCPWVMECAFAPNGQSV 123 (380)
T ss_dssp GGGCCCCCCCCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTE-EEEEEECCCTTCCCCEECTTSSEE
T ss_pred cccccccccceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-cceEEecCCCCEEEEEECCCCCEE
Confidence 4556678888888889999999999999999999999999999999999999987 556888999999999999999999
Q ss_pred EEEeCCCCeeeEEEEEecCC-------ceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecc----
Q 007229 118 VACGDGKGKSFVRAFMWDSG-------TTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSH---- 186 (612)
Q Consensus 118 ~~~~~~~~~~~i~i~~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~---- 186 (612)
++++.++ .+++|++.+. .....+.+|...|.++.|+|++...|++|+.|++|++||+.+++.+..+
T Consensus 124 as~~~d~---~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~ 200 (380)
T 3iz6_a 124 ACGGLDS---ACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEF 200 (380)
T ss_dssp EECCSSS---CCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCS
T ss_pred EEeeCCC---cEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeeccc
Confidence 9999998 4678877642 2445688999999999999986657999999999999999999887765
Q ss_pred -cccccceEEEEECC-CCCeEEEEEcCCcEEEEecC-CCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEE
Q 007229 187 -REHSNFVNCIRFSP-DGSKLISVSSDRKGLIYDGK-SGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWE 263 (612)
Q Consensus 187 -~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~ 263 (612)
.+|...|.+++|+| ++++|++|+.|+.|++||++ .++.+..+ .+|...|.+++|+|++++|++++.||+|++||
T Consensus 201 ~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~---~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd 277 (380)
T 3iz6_a 201 PSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTY---HGHEGDINSVKFFPDGQRFGTGSDDGTCRLFD 277 (380)
T ss_dssp SSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEE---CCCSSCCCEEEECTTSSEEEEECSSSCEEEEE
T ss_pred CCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEE---CCcCCCeEEEEEecCCCeEEEEcCCCeEEEEE
Confidence 67999999999987 88999999999999999997 44566666 48999999999999999999999999999999
Q ss_pred eecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEE
Q 007229 264 ILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTI 343 (612)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 343 (612)
+ .+++.+..+.... ..
T Consensus 278 ~----~~~~~~~~~~~~~----------------------------------------------------------~~-- 293 (380)
T 3iz6_a 278 M----RTGHQLQVYNREP----------------------------------------------------------DR-- 293 (380)
T ss_dssp T----TTTEEEEEECCCC----------------------------------------------------------SS--
T ss_pred C----CCCcEEEEecccc----------------------------------------------------------cc--
Confidence 9 6555443332110 00
Q ss_pred EEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCC
Q 007229 344 LSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSS 423 (612)
Q Consensus 344 ~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (612)
.+
T Consensus 294 ----~~-------------------------------------------------------------------------- 295 (380)
T 3iz6_a 294 ----ND-------------------------------------------------------------------------- 295 (380)
T ss_dssp ----SC--------------------------------------------------------------------------
T ss_pred ----cc--------------------------------------------------------------------------
Confidence 00
Q ss_pred CcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceee----ccccCceEE
Q 007229 424 PELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVL----EKHRGAITV 499 (612)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~----~~~~~~i~~ 499 (612)
.+...+++++|+|++++|++|+.||.|++||+..++. ...+ .+|.+.|++
T Consensus 296 ------------------------~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~--~~~~~~~~~~h~~~v~~ 349 (380)
T 3iz6_a 296 ------------------------NELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEM--VLNLGTLQNSHEGRISC 349 (380)
T ss_dssp ------------------------CSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCE--EEEECCSCSSCCCCCCE
T ss_pred ------------------------cccCceEEEEECCCCCEEEEEECCCCEEEEECCCCce--EEEEecccCCCCCceEE
Confidence 0001367899999999999999999999999987765 3333 679999999
Q ss_pred EEEcCCCcEEEEEcCCCeEEEEecCCcce
Q 007229 500 IQYSPDVSMFASADGNREAIVWDRVSKEV 528 (612)
Q Consensus 500 ~~~s~~~~~l~~~~~d~~i~iwd~~~~~~ 528 (612)
++|+|++++|++|+.|++|++|++...+.
T Consensus 350 l~~s~dg~~l~sgs~D~~i~iW~~~~~~~ 378 (380)
T 3iz6_a 350 LGLSSDGSALCTGSWDKNLKIWAFSGHRK 378 (380)
T ss_dssp EEECSSSSEEEEECTTSCEEEEECCSSSS
T ss_pred EEECCCCCEEEEeeCCCCEEEEecCCCcc
Confidence 99999999999999999999999987643
No 22
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-45 Score=357.34 Aligned_cols=343 Identities=16% Similarity=0.184 Sum_probs=280.2
Q ss_pred CEEEEEeCCCCceeeEeccCCCceEEEEECCCCC-EEEEeeCcCeEEEeec----CCCce-----eeeeeee--------
Q 007229 39 RSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGE-WIASADVSGSVRIWGT----HNGFV-----LKNEFKV-------- 100 (612)
Q Consensus 39 ~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~-~las~~~d~~i~iwd~----~~~~~-----~~~~~~~-------- 100 (612)
..+.+|+++..........|...|++++|+|+++ +||+++.||.|++||+ .+++. ....+..
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (425)
T 1r5m_A 25 SIDSSDDLDGFVKILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASS 104 (425)
T ss_dssp ---------CCCEECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC---
T ss_pred cccccccchhhhhheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccc
Confidence 3556788877665555566779999999999999 9999999999999999 87762 2223333
Q ss_pred --cCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCC
Q 007229 101 --LSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGP 178 (612)
Q Consensus 101 --~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 178 (612)
|...|.+++|+|++++|++++.++ .+.+|+ .+++.+..+.+|...|.+++|+|+++ .+++++.|+.|++||+.
T Consensus 105 ~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~ 179 (425)
T 1r5m_A 105 GKTTNQVTCLAWSHDGNSIVTGVENG---ELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGT-HIISMDVENVTILWNVI 179 (425)
T ss_dssp ---CBCEEEEEECTTSSEEEEEETTS---CEEEEE-TTSCEEEEECCCCSCEEEEEECTTSS-EEEEEETTCCEEEEETT
T ss_pred cCCCCceEEEEEcCCCCEEEEEeCCC---eEEEEe-CCCCeeeeccCCCccEEEEEECCCCC-EEEEEecCCeEEEEECC
Confidence 677999999999999999999987 456666 57888999999999999999999999 59999999999999999
Q ss_pred CCeeeecccccccc---------------eEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEE
Q 007229 179 PFKFKLSHREHSNF---------------VNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSW 243 (612)
Q Consensus 179 ~~~~~~~~~~~~~~---------------v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~ 243 (612)
+++.+..+..+... +.+++|+|++ .+++++.++.|++||+.+++.+..+ ..|...|.+++|
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~---~~~~~~i~~~~~ 255 (425)
T 1r5m_A 180 SGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKL---IGHHGPISVLEF 255 (425)
T ss_dssp TTEEEEEECCC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEE---CCCSSCEEEEEE
T ss_pred CCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeee---ccCCCceEEEEE
Confidence 99999888887777 9999999986 5888999999999999999888777 378999999999
Q ss_pred ecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceee
Q 007229 244 SPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSF 323 (612)
Q Consensus 244 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 323 (612)
+|++++|++++.||.|++||+ ..++.+..+
T Consensus 256 ~~~~~~l~~~~~d~~i~i~d~----~~~~~~~~~---------------------------------------------- 285 (425)
T 1r5m_A 256 NDTNKLLLSASDDGTLRIWHG----GNGNSQNCF---------------------------------------------- 285 (425)
T ss_dssp ETTTTEEEEEETTSCEEEECS----SSBSCSEEE----------------------------------------------
T ss_pred CCCCCEEEEEcCCCEEEEEEC----CCCccceEe----------------------------------------------
Confidence 999999999999999999998 332211110
Q ss_pred cCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCC
Q 007229 324 SGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECG 403 (612)
Q Consensus 324 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~ 403 (612)
.+
T Consensus 286 ~~------------------------------------------------------------------------------ 287 (425)
T 1r5m_A 286 YG------------------------------------------------------------------------------ 287 (425)
T ss_dssp CC------------------------------------------------------------------------------
T ss_pred cC------------------------------------------------------------------------------
Confidence 00
Q ss_pred ccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcc
Q 007229 404 DAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNT 483 (612)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~ 483 (612)
+...+.+++|+|++ ++++++.||.|++||+.+++
T Consensus 288 ---------------------------------------------~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~ 321 (425)
T 1r5m_A 288 ---------------------------------------------HSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNT 321 (425)
T ss_dssp ---------------------------------------------CSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTE
T ss_pred ---------------------------------------------CCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCc
Confidence 11247788899988 89999999999999998877
Q ss_pred cccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcc--------------------eeeeccccccc--cee
Q 007229 484 LTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKE--------------------VKLNNMLFHTA--RIN 541 (612)
Q Consensus 484 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~--------------------~~~~~~~~~~~--~i~ 541 (612)
. ...+..|..+|.+++|+|++++|++++.||.|++||+.+++ .+ ..+.+|.. .|+
T Consensus 322 ~--~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~ 398 (425)
T 1r5m_A 322 L--LALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLY-ASYQSSQDNDYIF 398 (425)
T ss_dssp E--EEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEE-EEECCTTCCCCEE
T ss_pred E--eEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhh-hhhcCcccCCceE
Confidence 6 56777889999999999999999999999999999999887 44 55777866 999
Q ss_pred EEEecCCCcEEEEeecCcEEEEEEcc
Q 007229 542 CLAWSPSSTMVATGSIDTCVIIYEIG 567 (612)
Q Consensus 542 ~~~~s~~~~~l~s~~~d~~i~iwd~~ 567 (612)
+++|+|++++|++++.||.|++||++
T Consensus 399 ~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 399 DLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp EEEECTTSSEEEEEESSSCCEEEECC
T ss_pred EEEccCCCceEEEEecCceEEEEeec
Confidence 99999999999999999999999986
No 23
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=3.2e-45 Score=340.18 Aligned_cols=284 Identities=18% Similarity=0.255 Sum_probs=254.9
Q ss_pred CCCCceeEEEEccCCCEEEEec-CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCc--
Q 007229 16 TERGRGILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGF-- 92 (612)
Q Consensus 16 ~~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~-- 92 (612)
.|.+.|.+++|+||+++|++++ |+.|+|||+.+++.+..+..|...|.+++|+|++++||+|+.|+.|++||+.+.+
T Consensus 53 gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~ 132 (340)
T 1got_B 53 GHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGN 132 (340)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBS
T ss_pred CCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCc
Confidence 5788999999999999999998 8999999999999999999999999999999999999999999999999998764
Q ss_pred -eeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCe
Q 007229 93 -VLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFL 171 (612)
Q Consensus 93 -~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~ 171 (612)
.....+.+|.+.|.++.|+++++ +++++.++ .+++|+..+++.+..+.+|...|.+++|+|+++ ++++|+.|+.
T Consensus 133 ~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~---~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~sg~~d~~ 207 (340)
T 1got_B 133 VRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDT---TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR-LFVSGACDAS 207 (340)
T ss_dssp CEEEEEEECCSSCEEEEEEEETTE-EEEEETTS---CEEEEETTTTEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSC
T ss_pred ceeEEEecCCCccEEEEEECCCCc-EEEEECCC---cEEEEECCCCcEEEEEcCCCCceEEEEECCCCC-EEEEEeCCCc
Confidence 25567789999999999999886 77888777 578888889999999999999999999999999 5999999999
Q ss_pred EEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEE
Q 007229 172 VNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVL 251 (612)
Q Consensus 172 i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~ 251 (612)
|++||+.++.....+.+|...|.+++|+|++++|++++.||+|++||+++++.+..+.. ..+...|.+++|+|++++|+
T Consensus 208 v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~-~~~~~~v~~~~~s~~g~~l~ 286 (340)
T 1got_B 208 AKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH-DNIICGITSVSFSKSGRLLL 286 (340)
T ss_dssp EEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC-TTCCSCEEEEEECTTSSEEE
T ss_pred EEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEcc-CCcccceEEEEECCCCCEEE
Confidence 99999999999999999999999999999999999999999999999999888777631 13445799999999999999
Q ss_pred EEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCccccee
Q 007229 252 TVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVS 331 (612)
Q Consensus 252 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~ 331 (612)
+++.||.|++||+ .+++.+ ..+.+|...|.
T Consensus 287 ~g~~d~~i~vwd~----~~~~~~----------------------------------------------~~~~~h~~~v~ 316 (340)
T 1got_B 287 AGYDDFNCNVWDA----LKADRA----------------------------------------------GVLAGHDNRVS 316 (340)
T ss_dssp EEETTSEEEEEET----TTCCEE----------------------------------------------EEEECCSSCEE
T ss_pred EECCCCeEEEEEc----ccCcEe----------------------------------------------eEeecCCCcEE
Confidence 9999999999998 554433 33456889999
Q ss_pred EEEEEecCCcEEEEEecCCcEEEEE
Q 007229 332 TLTALKISQQTILSSSYDGAIIKWI 356 (612)
Q Consensus 332 ~~~~~~~~~~~l~~~~~dg~i~~wd 356 (612)
+++|++ ++.+|++|+.||.|++||
T Consensus 317 ~~~~s~-dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 317 CLGVTD-DGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEECT-TSSCEEEEETTSCEEEEC
T ss_pred EEEEcC-CCCEEEEEcCCccEEecC
Confidence 999983 278999999999999996
No 24
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=7.4e-46 Score=342.29 Aligned_cols=293 Identities=13% Similarity=0.086 Sum_probs=243.3
Q ss_pred cCCCCCCCceeEEEEccCCCEEEEecCCEEEEEeCC-----------CCceeeEeccCCCceEEEEECCCCCEEEEeeCc
Q 007229 12 CAPSTERGRGILISGNPKTDTILYCNGRSVLIRYLD-----------KPLHVEFYGEHGYPVTVARYSPNGEWIASADVS 80 (612)
Q Consensus 12 ~~~~~~~~~v~~~~~s~d~~~l~~~~~~~i~i~~~~-----------~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d 80 (612)
..|..+...|.+++|||||++|++++++++++||.. ..........|...|.+++|+||+ .|++|+.|
T Consensus 24 ~~~~~~~~~v~~~~fs~dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~d 102 (344)
T 4gqb_B 24 NAPACMERQLEAARYRSDGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDS 102 (344)
T ss_dssp CSCSSCCSEEEEEEECTTSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETT
T ss_pred CCcccccCCEEEEEECCCCCEEEEEeCCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECC
Confidence 345567788999999999999999988777777632 111122233467889999999996 67899999
Q ss_pred CeEEEeecCCCcee---eeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcC
Q 007229 81 GSVRIWGTHNGFVL---KNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKP 157 (612)
Q Consensus 81 ~~i~iwd~~~~~~~---~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~ 157 (612)
|+|+|||+.+++.+ ...+.+|...|++++|+|+|++|++++.++ .+++|+.++++.+..+.+|...|.+++|+|
T Consensus 103 g~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~---~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~ 179 (344)
T 4gqb_B 103 GAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDI---CIKVWDLAQQVVLSSYRAHAAQVTCVAASP 179 (344)
T ss_dssp SEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTS---CEEEEETTTTEEEEEECCCSSCEEEEEECS
T ss_pred CEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCC---eEEEEECCCCcEEEEEcCcCCceEEEEecC
Confidence 99999999988753 234558999999999999999999999998 578999999999999999999999999999
Q ss_pred CCCEEEEEeecCCeEEEEeCCCCeeeeccc--ccccceEEEEECCC-CCeEEEEEcCCcEEEEecCCCCeeeeeeccCCc
Q 007229 158 TRPFRIATCGEDFLVNFYEGPPFKFKLSHR--EHSNFVNCIRFSPD-GSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGH 234 (612)
Q Consensus 158 ~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~--~~~~~v~~~~~s~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 234 (612)
++..++++++.|++|++||+++++....+. .|...+.+++|+|+ +++|++|+.||.|++||+++++.+..+ .+|
T Consensus 180 ~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~---~~h 256 (344)
T 4gqb_B 180 HKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSS---AVH 256 (344)
T ss_dssp SCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEE---ECC
T ss_pred CCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEE---cCC
Confidence 997679999999999999999998877754 45667999999995 567889999999999999999998888 489
Q ss_pred cccEEEEEEecCC-CEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEc
Q 007229 235 HGSIYAVSWSPDG-KKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSA 313 (612)
Q Consensus 235 ~~~v~~i~~~~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 313 (612)
...|.+++|+|++ ++|++++.|++|++||+ .++++.
T Consensus 257 ~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~----~~~~~~--------------------------------------- 293 (344)
T 4gqb_B 257 SQCVTGLVFSPHSVPFLASLSEDCSLAVLDS----SLSELF--------------------------------------- 293 (344)
T ss_dssp SSCEEEEEECSSSSCCEEEEETTSCEEEECT----TCCEEE---------------------------------------
T ss_pred CCCEEEEEEccCCCeEEEEEeCCCeEEEEEC----CCCcEE---------------------------------------
Confidence 9999999999998 57999999999999998 555432
Q ss_pred CCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCcee
Q 007229 314 SNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYS 362 (612)
Q Consensus 314 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~ 362 (612)
.+.+|...|.+++|++.+..++++++.||+|++|++.+...
T Consensus 294 --------~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 294 --------RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp --------EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC---
T ss_pred --------EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCC
Confidence 23469999999999965567888999999999999987543
No 25
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=3.7e-45 Score=333.87 Aligned_cols=296 Identities=18% Similarity=0.259 Sum_probs=252.4
Q ss_pred ceeEeeeeeccCCCCCCCceeEEEEccCCCEEEEec-CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCc
Q 007229 2 AEVHLSETYACAPSTERGRGILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVS 80 (612)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d 80 (612)
|++.+++++. .|.+.|.+++|+||+++|++++ ++.|++||+++++.++.+.+|...|.+++|+|++++|++|+.|
T Consensus 1 ~~l~~~~~~~----~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d 76 (304)
T 2ynn_A 1 MKLDIKKTFS----NRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDD 76 (304)
T ss_dssp -CCCCEEEEE----EECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETT
T ss_pred CcceeEEeec----CCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCC
Confidence 5666777665 4678999999999999999998 8999999999999999999999999999999999999999999
Q ss_pred CeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCC-ceeeeeccCCceEEEEEEcCCC
Q 007229 81 GSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSG-TTVGDFDGHSRRVLSCEFKPTR 159 (612)
Q Consensus 81 ~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~-~~~~~~~~~~~~v~~~~~~~~~ 159 (612)
++|++||+.+++ ....+.+|...|.+++|+|++++|++++.++ .+++|++.++ .....+.+|...|.+++|+|++
T Consensus 77 ~~i~vwd~~~~~-~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~---~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~ 152 (304)
T 2ynn_A 77 FRIRVFNYNTGE-KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDL---TVKLWNWENNWALEQTFEGHEHFVMCVAFNPKD 152 (304)
T ss_dssp SEEEEEETTTCC-EEEEEECCSSCEEEEEECSSSSEEEEEETTS---CEEEEEGGGTTEEEEEECCCCSCEEEEEECTTC
T ss_pred CEEEEEECCCCc-EEEEEeCCCCcEEEEEEcCCCCEEEEECCCC---eEEEEECCCCcchhhhhcccCCcEEEEEECCCC
Confidence 999999999998 4557899999999999999999999999998 5788888876 5567789999999999999954
Q ss_pred CEEEEEeecCCeEEEEeCCCCeeeeccc-ccccceEEEEECC--CCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccc
Q 007229 160 PFRIATCGEDFLVNFYEGPPFKFKLSHR-EHSNFVNCIRFSP--DGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHG 236 (612)
Q Consensus 160 ~~~l~~~~~d~~i~~wd~~~~~~~~~~~-~~~~~v~~~~~s~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 236 (612)
..++++|+.|++|++||+.+......+. +|...+..+.|+| ++++|++++.|++|++||+++++++..+ .+|..
T Consensus 153 ~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~---~~h~~ 229 (304)
T 2ynn_A 153 PSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL---EGHMS 229 (304)
T ss_dssp TTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEE---ECCSS
T ss_pred CCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceee---CCCCC
Confidence 3379999999999999998877665543 5668899999987 7789999999999999999999998888 48999
Q ss_pred cEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCC
Q 007229 237 SIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNL 316 (612)
Q Consensus 237 ~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 316 (612)
.|.+++|+|++++|++++.||.|++||+ .+++.+..+
T Consensus 230 ~v~~~~~~p~~~~l~s~s~Dg~i~iWd~----~~~~~~~~~--------------------------------------- 266 (304)
T 2ynn_A 230 NVSFAVFHPTLPIIISGSEDGTLKIWNS----STYKVEKTL--------------------------------------- 266 (304)
T ss_dssp CEEEEEECSSSSEEEEEETTSCEEEEET----TTCCEEEEE---------------------------------------
T ss_pred CEEEEEECCCCCEEEEEcCCCeEEEEEC----CCCceeeec---------------------------------------
Confidence 9999999999999999999999999999 666665544
Q ss_pred CCCceeecCcccceeEEEEEecCCc-EEEEEecCCcEEEEEcCC
Q 007229 317 DKAPLSFSGHVKNVSTLTALKISQQ-TILSSSYDGAIIKWIRGV 359 (612)
Q Consensus 317 ~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~~wd~~~ 359 (612)
..|...+.++++++.++. ++++|+.| .+.+|++..
T Consensus 267 -------~~~~~~~~~~~~~~~~~~~~~asg~~~-g~~~~~~~~ 302 (304)
T 2ynn_A 267 -------NVGLERSWCIATHPTGRKNYIASGFDN-GFTVLSLGN 302 (304)
T ss_dssp -------CCSSSSEEEEEECTTCGGGCEEEEETT-EEEEEECC-
T ss_pred -------cCCCccEEEEEECCCCCceEEEEecCC-ceEEEEecc
Confidence 345667788887744344 46666544 466666543
No 26
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.5e-45 Score=353.86 Aligned_cols=354 Identities=13% Similarity=0.158 Sum_probs=283.2
Q ss_pred EEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeC----CCCe------eeecccc----------c
Q 007229 130 RAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEG----PPFK------FKLSHRE----------H 189 (612)
Q Consensus 130 ~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~----~~~~------~~~~~~~----------~ 189 (612)
.+|.|+..........|...|.+++|+|+++.+|++++.||.|++||+ .+++ ....+.. |
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (425)
T 1r5m_A 28 SSDDLDGFVKILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKT 107 (425)
T ss_dssp ------CCCEECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------
T ss_pred ccccchhhhhheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCC
Confidence 466666555555556677999999999999834999999999999999 8877 3444433 6
Q ss_pred ccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCC
Q 007229 190 SNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGS 269 (612)
Q Consensus 190 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 269 (612)
...|.+++|+|++++|++++.||.|++|| .+++.+..+ ..|...|.+++|+|++++|++++.||.+++||+ .
T Consensus 108 ~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~----~ 179 (425)
T 1r5m_A 108 TNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVL---NFHRAPIVSVKWNKDGTHIISMDVENVTILWNV----I 179 (425)
T ss_dssp CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEE---CCCCSCEEEEEECTTSSEEEEEETTCCEEEEET----T
T ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeec---cCCCccEEEEEECCCCCEEEEEecCCeEEEEEC----C
Confidence 78999999999999999999999999999 677777777 379999999999999999999999999999999 7
Q ss_pred CCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecC
Q 007229 270 GGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYD 349 (612)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 349 (612)
+++.+..+........ .............+.++.+.+ +..+++++.+
T Consensus 180 ~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 226 (425)
T 1r5m_A 180 SGTVMQHFELKETGGS-------------------------------SINAENHSGDGSLGVDVEWVD--DDKFVIPGPK 226 (425)
T ss_dssp TTEEEEEECCC----------------------------------------------CCCBSCCEEEE--TTEEEEECGG
T ss_pred CCcEEEEeeccccCcc-------------------------------ceeeccccCCcceeeEEEEcC--CCEEEEEcCC
Confidence 8887776654431100 000011122333477788887 6778999999
Q ss_pred CcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEE
Q 007229 350 GAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALV 429 (612)
Q Consensus 350 g~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (612)
|.|++||+..+.......
T Consensus 227 g~i~~~d~~~~~~~~~~~-------------------------------------------------------------- 244 (425)
T 1r5m_A 227 GAIFVYQITEKTPTGKLI-------------------------------------------------------------- 244 (425)
T ss_dssp GCEEEEETTCSSCSEEEC--------------------------------------------------------------
T ss_pred CeEEEEEcCCCceeeeec--------------------------------------------------------------
Confidence 999999887654322211
Q ss_pred EeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEE
Q 007229 430 STESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMF 509 (612)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 509 (612)
.+...+.+++|+|++++|++++.||.|++||+.+++. ...+..|...|.+++|+|++ ++
T Consensus 245 ------------------~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~--~~~~~~~~~~i~~~~~~~~~-~l 303 (425)
T 1r5m_A 245 ------------------GHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNS--QNCFYGHSQSIVSASWVGDD-KV 303 (425)
T ss_dssp ------------------CCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSC--SEEECCCSSCEEEEEEETTT-EE
T ss_pred ------------------cCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCcc--ceEecCCCccEEEEEECCCC-EE
Confidence 1334689999999999999999999999999998876 67778899999999999999 99
Q ss_pred EEEcCCCeEEEEecCCcceeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcc-----------------
Q 007229 510 ASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASS----------------- 572 (612)
Q Consensus 510 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~----------------- 572 (612)
++++.|+.|++||+.+++.+ ..+..|..+|.+++|+|++++|++++.||.|++||+.+ . .
T Consensus 304 ~~~~~d~~i~i~d~~~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~-~-~~~~~~~~~~~~~~~~~~ 380 (425)
T 1r5m_A 304 ISCSMDGSVRLWSLKQNTLL-ALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKK-L-NSKSRSLYGNRDGILNPL 380 (425)
T ss_dssp EEEETTSEEEEEETTTTEEE-EEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHH-H-HC--------------CE
T ss_pred EEEeCCCcEEEEECCCCcEe-EecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCC-C-ccceeeeecccccccCcc
Confidence 99999999999999998876 55667899999999999999999999999999999987 4 4
Q ss_pred ---eeeeeccccc--CeeeEEEe-cCceEEEccCCCeEEEEEec
Q 007229 573 ---RITIKNAHLG--GVYGVAFM-DDFNVVSSGEDACIRVWRLA 610 (612)
Q Consensus 573 ---~~~~~~~h~~--~v~~~~~~-~~~~l~s~~~d~~i~~w~~~ 610 (612)
.+..+.+|.. .|.+++|+ ++++|++++.||.|++|+++
T Consensus 381 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 381 PIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp ECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred cchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 7888999977 99999999 88999999999999999986
No 27
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=3.3e-46 Score=352.34 Aligned_cols=317 Identities=14% Similarity=0.201 Sum_probs=262.1
Q ss_pred CCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCC
Q 007229 169 DFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGK 248 (612)
Q Consensus 169 d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~ 248 (612)
+..+..|+.....+..++.+|.+.|.+++|+|++++|++|+.|++|++||+.+++....+ ..|...|.+++|+|+++
T Consensus 45 ~~~~~~~~~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~---~~h~~~v~~~~~s~~g~ 121 (380)
T 3iz6_a 45 GRTAVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAI---KLHCPWVMECAFAPNGQ 121 (380)
T ss_dssp GGGCCCCCCCCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEE---ECCCTTCCCCEECTTSS
T ss_pred cccccccccceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEE---ecCCCCEEEEEECCCCC
Confidence 344556777788888899999999999999999999999999999999999999988888 38899999999999999
Q ss_pred EEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCccc
Q 007229 249 KVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVK 328 (612)
Q Consensus 249 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 328 (612)
+|++++.|+.+++|++ ...... .........+.+|..
T Consensus 122 ~las~~~d~~v~iw~~----~~~~~~---------------------------------------~~~~~~~~~~~gh~~ 158 (380)
T 3iz6_a 122 SVACGGLDSACSIFNL----SSQADR---------------------------------------DGNMPVSRVLTGHKG 158 (380)
T ss_dssp EEEECCSSSCCEEEEC----CCCSSC---------------------------------------CCSSTTCCBCCCCSS
T ss_pred EEEEeeCCCcEEEEEC----CCCccc---------------------------------------cCCccceeeccCCCc
Confidence 9999999999999998 322110 011122355778999
Q ss_pred ceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCcccee
Q 007229 329 NVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHI 408 (612)
Q Consensus 329 ~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~ 408 (612)
.+.++.|.+..+..+++++.|++|++||+.+++....... .
T Consensus 159 ~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~-----------------------------~---------- 199 (380)
T 3iz6_a 159 YASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGS-----------------------------E---------- 199 (380)
T ss_dssp CCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECC-----------------------------C----------
T ss_pred ceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeec-----------------------------c----------
Confidence 9999999865577899999999999999987765432210 0
Q ss_pred ccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEcc-CCCeEEEEecCCeEEEEEccCc-cccc
Q 007229 409 DVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAP-DGSEAIVGGQNGKLHIYSISGN-TLTE 486 (612)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~v~i~d~~~~-~~~~ 486 (612)
....|...+.+++++| +++++++|+.||.|++||++.. ..
T Consensus 200 ------------------------------------~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~-- 241 (380)
T 3iz6_a 200 ------------------------------------FPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRA-- 241 (380)
T ss_dssp ------------------------------------SSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCC--
T ss_pred ------------------------------------cCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcc--
Confidence 0011344688999977 8899999999999999999743 33
Q ss_pred ceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeeccccc-------ccceeEEEecCCCcEEEEeecCc
Q 007229 487 EMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFH-------TARINCLAWSPSSTMVATGSIDT 559 (612)
Q Consensus 487 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-------~~~i~~~~~s~~~~~l~s~~~d~ 559 (612)
...+.+|.+.|++++|+|++++|++++.|++|++||+.+++.+. .+..+ ...|++++|+|+|++|++|+.||
T Consensus 242 ~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg 320 (380)
T 3iz6_a 242 VRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQ-VYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNG 320 (380)
T ss_dssp CEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEE-EECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTS
T ss_pred eEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEE-EecccccccccccCceEEEEECCCCCEEEEEECCC
Confidence 57788999999999999999999999999999999999988763 23222 23489999999999999999999
Q ss_pred EEEEEEccCCCcceeeee----cccccCeeeEEEe-cCceEEEccCCCeEEEEEecc
Q 007229 560 CVIIYEIGKPASSRITIK----NAHLGGVYGVAFM-DDFNVVSSGEDACIRVWRLAT 611 (612)
Q Consensus 560 ~i~iwd~~~~~~~~~~~~----~~h~~~v~~~~~~-~~~~l~s~~~d~~i~~w~~~~ 611 (612)
.|++||+.. + +.+..+ .+|.+.|++++|+ ++.+|++|+.|++|++|+++.
T Consensus 321 ~i~vwd~~~-~-~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~ 375 (380)
T 3iz6_a 321 DCYVWDTLL-A-EMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSG 375 (380)
T ss_dssp CEEEEETTT-C-CEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCS
T ss_pred CEEEEECCC-C-ceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCC
Confidence 999999987 4 454444 6899999999999 999999999999999999875
No 28
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=4.2e-44 Score=329.14 Aligned_cols=207 Identities=20% Similarity=0.252 Sum_probs=187.2
Q ss_pred ceeeEeccCCCceEEEEECCCC-CEEEEeeCcCeEEEeecCCCce----eeeeeeecCCCeEEEEECCCCCEEEEEeCCC
Q 007229 50 LHVEFYGEHGYPVTVARYSPNG-EWIASADVSGSVRIWGTHNGFV----LKNEFKVLSGRIDDLQWSPDGLRIVACGDGK 124 (612)
Q Consensus 50 ~~~~~~~~h~~~v~~~~~s~d~-~~las~~~d~~i~iwd~~~~~~----~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~ 124 (612)
.+...+.+|.+.|++++|+|++ ++|++|+.|++|++||+..... ....+.+|...|.+++|+|++++|++++.++
T Consensus 8 ~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~ 87 (319)
T 3frx_A 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDK 87 (319)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCC
Confidence 3455689999999999999965 8999999999999999975322 3457889999999999999999999999998
Q ss_pred CeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCC---
Q 007229 125 GKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPD--- 201 (612)
Q Consensus 125 ~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~--- 201 (612)
.+++|+..+++.+..+.+|...|.+++|+|++. ++++|+.|++|++||++ ++.+..+.+|...|.+++|+|+
T Consensus 88 ---~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~ 162 (319)
T 3frx_A 88 ---TLRLWDVATGETYQRFVGHKSDVMSVDIDKKAS-MIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKA 162 (319)
T ss_dssp ---EEEEEETTTTEEEEEEECCSSCEEEEEECTTSC-EEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC---
T ss_pred ---EEEEEECCCCCeeEEEccCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCC
Confidence 688888889999999999999999999999999 59999999999999996 4566778899999999999995
Q ss_pred ---CCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEe
Q 007229 202 ---GSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 202 ---~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~ 264 (612)
+.++++++.|+.|++||+++++....+ .+|...|.+++|+|++++|++++.||.|++||+
T Consensus 163 ~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~---~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~ 225 (319)
T 3frx_A 163 DDDSVTIISAGNDKMVKAWNLNQFQIEADF---IGHNSNINTLTASPDGTLIASAGKDGEIMLWNL 225 (319)
T ss_dssp ---CCEEEEEETTSCEEEEETTTTEEEEEE---CCCCSCEEEEEECTTSSEEEEEETTCEEEEEET
T ss_pred CCCccEEEEEeCCCEEEEEECCcchhheee---cCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence 448999999999999999998888777 489999999999999999999999999999998
No 29
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=2.4e-44 Score=336.28 Aligned_cols=320 Identities=13% Similarity=0.172 Sum_probs=273.8
Q ss_pred CCceeEEEEccCCCEEEEec-CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceee-
Q 007229 18 RGRGILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLK- 95 (612)
Q Consensus 18 ~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~- 95 (612)
.+.|.+++|+|||++++++. ++.+.+|+...........+|...|++++|+|++++|++++ ||.|++||+.+++...
T Consensus 9 ~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~ 87 (337)
T 1gxr_A 9 SKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSP 87 (337)
T ss_dssp EEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSC
T ss_pred CCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceee
Confidence 45788999999999999887 56666666655544545568999999999999999999998 9999999998775322
Q ss_pred -eeee--ecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCc--eeeeeccCCceEEEEEEcCCCCEEEEEeecCC
Q 007229 96 -NEFK--VLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGT--TVGDFDGHSRRVLSCEFKPTRPFRIATCGEDF 170 (612)
Q Consensus 96 -~~~~--~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~ 170 (612)
..+. .|...|.+++|+|++++|++++.++ .+.+|+.++++ ....+..|...|.+++|+|+++ .+++++.||
T Consensus 88 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg 163 (337)
T 1gxr_A 88 VSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAS---TLSIWDLAAPTPRIKAELTSSAPACYALAISPDSK-VCFSCCSDG 163 (337)
T ss_dssp SEEEECSCTTSBEEEEEECTTSSEEEEEESSS---EEEEEECCCC--EEEEEEECSSSCEEEEEECTTSS-EEEEEETTS
T ss_pred eecccccCCCCcEEEEEEcCCCCEEEEEcCCC---cEEEEECCCCCcceeeecccCCCceEEEEECCCCC-EEEEEeCCC
Confidence 2222 6889999999999999999999887 57788777766 6777889999999999999999 599999999
Q ss_pred eEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEE
Q 007229 171 LVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKV 250 (612)
Q Consensus 171 ~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l 250 (612)
.|++||+.+++....+..|...|.+++|+|++++|++++.|+.|++||+++++.+..+ .+...+.+++|+|+++++
T Consensus 164 ~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~----~~~~~v~~~~~s~~~~~l 239 (337)
T 1gxr_A 164 NIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH----DFTSQIFSLGYCPTGEWL 239 (337)
T ss_dssp CEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE----ECSSCEEEEEECTTSSEE
T ss_pred cEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeee----cCCCceEEEEECCCCCEE
Confidence 9999999999999999999999999999999999999999999999999999988887 678889999999999999
Q ss_pred EEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccce
Q 007229 251 LTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNV 330 (612)
Q Consensus 251 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v 330 (612)
++++.++.+++||+ ...+... +.
T Consensus 240 ~~~~~~~~i~~~~~----~~~~~~~-----------------------------------------------~~------ 262 (337)
T 1gxr_A 240 AVGMESSNVEVLHV----NKPDKYQ-----------------------------------------------LH------ 262 (337)
T ss_dssp EEEETTSCEEEEET----TSSCEEE-----------------------------------------------EC------
T ss_pred EEEcCCCcEEEEEC----CCCCeEE-----------------------------------------------Ec------
Confidence 99999999999998 2221100 00
Q ss_pred eEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceecc
Q 007229 331 STLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDV 410 (612)
Q Consensus 331 ~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~ 410 (612)
T Consensus 263 -------------------------------------------------------------------------------- 262 (337)
T 1gxr_A 263 -------------------------------------------------------------------------------- 262 (337)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceee
Q 007229 411 GSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVL 490 (612)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~ 490 (612)
.+...+.+++|+|++++|++++.||.|++||+.+++.. ..
T Consensus 263 -------------------------------------~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~---~~ 302 (337)
T 1gxr_A 263 -------------------------------------LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI---FQ 302 (337)
T ss_dssp -------------------------------------CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE---EE
T ss_pred -------------------------------------CCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEE---EE
Confidence 01124788999999999999999999999999988762 34
Q ss_pred ccccCceEEEEEcCCCcEEEEEcCCCeEEEEec
Q 007229 491 EKHRGAITVIQYSPDVSMFASADGNREAIVWDR 523 (612)
Q Consensus 491 ~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~ 523 (612)
..|...|.+++|+|++++|++++.||.|++|++
T Consensus 303 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 303 SKESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred ecCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 558889999999999999999999999999996
No 30
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.5e-44 Score=333.53 Aligned_cols=300 Identities=16% Similarity=0.184 Sum_probs=235.1
Q ss_pred EEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCC----------CceeeeeeeecCCCeEEEEEC
Q 007229 42 LIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHN----------GFVLKNEFKVLSGRIDDLQWS 111 (612)
Q Consensus 42 ~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~----------~~~~~~~~~~~~~~i~~~~~s 111 (612)
+.|++....+ ..|...|.+++|+|||++|++++ |+++++||... ..........+...|.+++|+
T Consensus 17 r~w~~~~~~~----~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 91 (344)
T 4gqb_B 17 REWNLPPNAP----ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWV 91 (344)
T ss_dssp ------CCSC----SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEE
T ss_pred cccCCCCCCc----ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEe
Confidence 4677654432 35788899999999999999887 67888887321 011222344577889999999
Q ss_pred CCCCEEEEEeCCCCeeeEEEEEecCCceeee----eccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeeccc
Q 007229 112 PDGLRIVACGDGKGKSFVRAFMWDSGTTVGD----FDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHR 187 (612)
Q Consensus 112 ~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~ 187 (612)
|++ .|++++.++ .|++|+.++++.+.. +.+|.+.|++++|+|+++ +|++|+.|++|++||+.+++.+..+.
T Consensus 92 ~d~-~l~~~s~dg---~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~-~l~sgs~d~~i~iwd~~~~~~~~~~~ 166 (344)
T 4gqb_B 92 GER-GILVASDSG---AVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGT-QAVSGSKDICIKVWDLAQQVVLSSYR 166 (344)
T ss_dssp TTT-EEEEEETTS---EEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred CCC-eEEEEECCC---EEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCC-EEEEEeCCCeEEEEECCCCcEEEEEc
Confidence 986 677888887 688898888775544 458999999999999999 59999999999999999999999999
Q ss_pred ccccceEEEEECCCCC-eEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEec-CCCEEEEEeCCCcEEEEEee
Q 007229 188 EHSNFVNCIRFSPDGS-KLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSP-DGKKVLTVSADKSAKVWEIL 265 (612)
Q Consensus 188 ~~~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~dg~i~iw~~~ 265 (612)
+|...|.+++|+|++. +|++++.|++|++||+++++....+... .+...+.+++|+| ++++|++++.||.|++||+
T Consensus 167 ~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~- 244 (344)
T 4gqb_B 167 AHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCS-APGYLPTSLAWHPQQSEVFVFGDENGTVSLVDT- 244 (344)
T ss_dssp CCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC-----CCCEEEEEECSSCTTEEEEEETTSEEEEEES-
T ss_pred CcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecc-eeeccceeeeecCCCCcceEEeccCCcEEEEEC-
Confidence 9999999999999885 6889999999999999999988877422 4566799999998 4567889999999999998
Q ss_pred cCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEE
Q 007229 266 EDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILS 345 (612)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 345 (612)
.+++++..+. +|
T Consensus 245 ---~~~~~~~~~~----------------------------------------------~h------------------- 256 (344)
T 4gqb_B 245 ---KSTSCVLSSA----------------------------------------------VH------------------- 256 (344)
T ss_dssp ---CC--CCEEEE----------------------------------------------CC-------------------
T ss_pred ---CCCcEEEEEc----------------------------------------------CC-------------------
Confidence 4433322211 11
Q ss_pred EecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCc
Q 007229 346 SSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPE 425 (612)
Q Consensus 346 ~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (612)
T Consensus 257 -------------------------------------------------------------------------------- 256 (344)
T 4gqb_B 257 -------------------------------------------------------------------------------- 256 (344)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEEeeccEEEeecccceeeecccceEEEEEEccCC-CeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcC
Q 007229 426 LALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDG-SEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSP 504 (612)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~ 504 (612)
...|++++|+|++ ++|++|+.|++|++||+.++++ ..+.+|.+.|++++|+|
T Consensus 257 ------------------------~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~---~~~~~H~~~V~~v~~sp 309 (344)
T 4gqb_B 257 ------------------------SQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSEL---FRSQAHRDFVRDATWSP 309 (344)
T ss_dssp ------------------------SSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEE---EEECCCSSCEEEEEECS
T ss_pred ------------------------CCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcE---EEEcCCCCCEEEEEEeC
Confidence 1247788899987 5789999999999999998875 45789999999999999
Q ss_pred CCc-EEEEEcCCCeEEEEecCCcce
Q 007229 505 DVS-MFASADGNREAIVWDRVSKEV 528 (612)
Q Consensus 505 ~~~-~l~~~~~d~~i~iwd~~~~~~ 528 (612)
+++ +|++++.|++|++|++.+...
T Consensus 310 ~~~~llas~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 310 LNHSLLTTVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp SSTTEEEEEETTSCEEEEECCC---
T ss_pred CCCeEEEEEcCCCeEEEEECCCCCC
Confidence 886 577999999999999987654
No 31
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=2.8e-44 Score=335.78 Aligned_cols=322 Identities=15% Similarity=0.193 Sum_probs=275.5
Q ss_pred CCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCC
Q 007229 58 HGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSG 137 (612)
Q Consensus 58 h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~ 137 (612)
|.+.|.+++|+|||++++++..++.+.+|+........ ....|...|.+++|+|++++|++++ ++ .+++|+.+++
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~l~~~~-dg---~i~iw~~~~~ 82 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQI-NTLNHGEVVCAVTISNPTRHVYTGG-KG---CVKVWDISHP 82 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEE-EEECCSSCCCEEEECSSSSEEEEEC-BS---EEEEEETTST
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccc-eeccCCCceEEEEEecCCcEEEEcC-CC---eEEEEECCCC
Confidence 56789999999999999999888888888776655333 4457999999999999999999998 55 5788887765
Q ss_pred cee---eeec--cCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCe--eeecccccccceEEEEECCCCCeEEEEEc
Q 007229 138 TTV---GDFD--GHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFK--FKLSHREHSNFVNCIRFSPDGSKLISVSS 210 (612)
Q Consensus 138 ~~~---~~~~--~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 210 (612)
+.. ..+. +|...|.+++|+|+++ ++++++.|+.|++||+.+++ ....+..|...|.+++|+|++++|++++.
T Consensus 83 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 161 (337)
T 1gxr_A 83 GNKSPVSQLDCLNRDNYIRSCKLLPDGC-TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCS 161 (337)
T ss_dssp TCCSCSEEEECSCTTSBEEEEEECTTSS-EEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEET
T ss_pred CceeeeecccccCCCCcEEEEEEcCCCC-EEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeC
Confidence 533 3333 7999999999999999 59999999999999999887 56667889999999999999999999999
Q ss_pred CCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeee
Q 007229 211 DRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLV 290 (612)
Q Consensus 211 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (612)
||.|++||+++++....+ ..|...+.+++|+|+++++++++.||.|++||+ .+++.+..+.
T Consensus 162 dg~v~~~d~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~----~~~~~~~~~~------------ 222 (337)
T 1gxr_A 162 DGNIAVWDLHNQTLVRQF---QGHTDGASCIDISNDGTKLWTGGLDNTVRSWDL----REGRQLQQHD------------ 222 (337)
T ss_dssp TSCEEEEETTTTEEEEEE---CCCSSCEEEEEECTTSSEEEEEETTSEEEEEET----TTTEEEEEEE------------
T ss_pred CCcEEEEeCCCCceeeee---ecccCceEEEEECCCCCEEEEEecCCcEEEEEC----CCCceEeeec------------
Confidence 999999999999888887 378999999999999999999999999999998 3332221110
Q ss_pred eeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecc
Q 007229 291 GCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYD 370 (612)
Q Consensus 291 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~ 370 (612)
T Consensus 223 -------------------------------------------------------------------------------- 222 (337)
T 1gxr_A 223 -------------------------------------------------------------------------------- 222 (337)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeeccc
Q 007229 371 ARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLG 450 (612)
Q Consensus 371 ~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (612)
+.
T Consensus 223 ------------------------------------------------------------------------------~~ 224 (337)
T 1gxr_A 223 ------------------------------------------------------------------------------FT 224 (337)
T ss_dssp ------------------------------------------------------------------------------CS
T ss_pred ------------------------------------------------------------------------------CC
Confidence 11
Q ss_pred ceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceee
Q 007229 451 FTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKL 530 (612)
Q Consensus 451 ~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~ 530 (612)
..+.+++|+|+++++++++.+|.|++||+.+++. ..+..|...|.+++|+|++++|++++.||.|++||+.+++.+.
T Consensus 225 ~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~ 301 (337)
T 1gxr_A 225 SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK---YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIF 301 (337)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE---EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred CceEEEEECCCCCEEEEEcCCCcEEEEECCCCCe---EEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEE
Confidence 2467889999999999999999999999998765 5677899999999999999999999999999999999988763
Q ss_pred ecccccccceeEEEecCCCcEEEEeecCcEEEEEEcc
Q 007229 531 NNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIG 567 (612)
Q Consensus 531 ~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~ 567 (612)
...|...|.+++|+|++++|++++.||.|++|++.
T Consensus 302 --~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 302 --QSKESSSVLSCDISVDDKYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp --EEECSSCEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred --EecCCCcEEEEEECCCCCEEEEecCCCeEEEEEEe
Confidence 33488999999999999999999999999999974
No 32
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=5.8e-45 Score=339.79 Aligned_cols=291 Identities=14% Similarity=0.120 Sum_probs=239.5
Q ss_pred CCCCCCCceeEEEEccCCCEEEEec-------CCEEEEEeCCCCcee----eEeccCCCceEEEEECCCCCEEEEeeCcC
Q 007229 13 APSTERGRGILISGNPKTDTILYCN-------GRSVLIRYLDKPLHV----EFYGEHGYPVTVARYSPNGEWIASADVSG 81 (612)
Q Consensus 13 ~~~~~~~~v~~~~~s~d~~~l~~~~-------~~~i~i~~~~~~~~~----~~~~~h~~~v~~~~~s~d~~~las~~~d~ 81 (612)
.|..|...|.+++|||||++||+++ ++.|.+|+..++... ....+|...|++++|+|++++| +++.||
T Consensus 37 ~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l-~~s~dg 115 (357)
T 4g56_B 37 APACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGIL-VASDSG 115 (357)
T ss_dssp ---CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEE-EEETTS
T ss_pred CcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEE-EEECCC
Confidence 3556889999999999999999997 468999998876543 3345799999999999998755 567899
Q ss_pred eEEEeecCCCcee---eeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCC
Q 007229 82 SVRIWGTHNGFVL---KNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPT 158 (612)
Q Consensus 82 ~i~iwd~~~~~~~---~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~ 158 (612)
+|+|||+.+++.+ .....+|...|.+++|+|++++|++++.++ .+++|+.++++.+..+.+|...|.+++|+|+
T Consensus 116 ~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg---~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~ 192 (357)
T 4g56_B 116 AVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDF---SVKVWDLSQKAVLKSYNAHSSEVNCVAACPG 192 (357)
T ss_dssp CEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTS---CEEEEETTTTEEEEEECCCSSCEEEEEECTT
T ss_pred EEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCC---eEEEEECCCCcEEEEEcCCCCCEEEEEEccC
Confidence 9999999987642 223457899999999999999999999998 5788888899999999999999999999999
Q ss_pred CCEEEEEeecCCeEEEEeCCCCeeeecc--cccccceEEEEECCCC-CeEEEEEcCCcEEEEecCCCCeeeeeeccCCcc
Q 007229 159 RPFRIATCGEDFLVNFYEGPPFKFKLSH--REHSNFVNCIRFSPDG-SKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHH 235 (612)
Q Consensus 159 ~~~~l~~~~~d~~i~~wd~~~~~~~~~~--~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 235 (612)
++.++++++.|+.|++||+++++....+ ..|...+.+++|+|++ .+|++|+.|+.|++||+++++.+..+ .+|.
T Consensus 193 ~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~---~~~~ 269 (357)
T 4g56_B 193 KDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTS---AVHS 269 (357)
T ss_dssp CSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEE---CCCS
T ss_pred CCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEE---eccc
Confidence 8767999999999999999998877654 4577789999999974 67889999999999999999988887 4899
Q ss_pred ccEEEEEEecCC-CEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcC
Q 007229 236 GSIYAVSWSPDG-KKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSAS 314 (612)
Q Consensus 236 ~~v~~i~~~~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 314 (612)
..|.+++|+|++ ++|++++.|++|++||+ .+++.+..
T Consensus 270 ~~v~~l~~sp~~~~~lasgs~D~~i~iwd~----~~~~~~~~-------------------------------------- 307 (357)
T 4g56_B 270 QNITGLAYSYHSSPFLASISEDCTVAVLDA----DFSEVFRD-------------------------------------- 307 (357)
T ss_dssp SCEEEEEECSSSSCCEEEEETTSCEEEECT----TSCEEEEE--------------------------------------
T ss_pred eeEEEEEEcCCCCCEEEEEeCCCEEEEEEC----CCCcEeEE--------------------------------------
Confidence 999999999987 57899999999999998 66654432
Q ss_pred CCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCce
Q 007229 315 NLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGY 361 (612)
Q Consensus 315 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~ 361 (612)
.+|...|++++|++.++.+|++++.||.|++|++....
T Consensus 308 ---------~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 308 ---------LSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEG 345 (357)
T ss_dssp ---------CCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC---
T ss_pred ---------CCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCC
Confidence 25889999999996668999999999999999987543
No 33
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=3.8e-44 Score=333.38 Aligned_cols=306 Identities=17% Similarity=0.264 Sum_probs=246.6
Q ss_pred Ceeeeccccccc-ceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCc
Q 007229 180 FKFKLSHREHSN-FVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKS 258 (612)
Q Consensus 180 ~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~ 258 (612)
.+++.++.+|.. .|.+++|+|+|++|++++.|++|++||++++..........+|...|.+++|+|++++|++++.|+.
T Consensus 5 ~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~ 84 (345)
T 3fm0_A 5 LVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDAT 84 (345)
T ss_dssp EEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred EEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCc
Confidence 345667888987 9999999999999999999999999999888654433223589999999999999999999999999
Q ss_pred EEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEec
Q 007229 259 AKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKI 338 (612)
Q Consensus 259 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 338 (612)
+++|++ ..+... ....+.+|...|.+++|++
T Consensus 85 v~iw~~----~~~~~~--------------------------------------------~~~~~~~h~~~v~~v~~sp- 115 (345)
T 3fm0_A 85 TCIWKK----NQDDFE--------------------------------------------CVTTLEGHENEVKSVAWAP- 115 (345)
T ss_dssp EEEEEE----CCC-EE--------------------------------------------EEEEECCCSSCEEEEEECT-
T ss_pred EEEEEc----cCCCeE--------------------------------------------EEEEccCCCCCceEEEEeC-
Confidence 999998 433211 1234567999999999984
Q ss_pred CCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceee
Q 007229 339 SQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLS 418 (612)
Q Consensus 339 ~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (612)
++++|++++.|+.|++||+..........
T Consensus 116 ~~~~l~s~s~D~~v~iwd~~~~~~~~~~~--------------------------------------------------- 144 (345)
T 3fm0_A 116 SGNLLATCSRDKSVWVWEVDEEDEYECVS--------------------------------------------------- 144 (345)
T ss_dssp TSSEEEEEETTSCEEEEEECTTSCEEEEE---------------------------------------------------
T ss_pred CCCEEEEEECCCeEEEEECCCCCCeEEEE---------------------------------------------------
Confidence 27899999999999999987543211100
Q ss_pred ecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceE
Q 007229 419 LALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAIT 498 (612)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~ 498 (612)
....|...|.+++|+|++++|++++.|+.|++||..++.......+.+|...|+
T Consensus 145 --------------------------~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~ 198 (345)
T 3fm0_A 145 --------------------------VLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVW 198 (345)
T ss_dssp --------------------------EECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEE
T ss_pred --------------------------EecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceE
Confidence 000134468999999999999999999999999998877655678899999999
Q ss_pred EEEEcCCCcEEEEEcCCCeEEEEecCCcc---------------eeeecccccccceeEEEecCCCcEEEEeecCcEEEE
Q 007229 499 VIQYSPDVSMFASADGNREAIVWDRVSKE---------------VKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVII 563 (612)
Q Consensus 499 ~~~~s~~~~~l~~~~~d~~i~iwd~~~~~---------------~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~i 563 (612)
+++|+|++++|++++.|++|++||..... ++......|...|.+++|+|++..|++++.|+.|++
T Consensus 199 ~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~v 278 (345)
T 3fm0_A 199 SLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRV 278 (345)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEE
T ss_pred EEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEE
Confidence 99999999999999999999999964321 111112238889999999999999999999999999
Q ss_pred EEccCCCc--c-----eeeeecccccCeeeEEEe-cC-ceEEEccCCCeEEEEEecc
Q 007229 564 YEIGKPAS--S-----RITIKNAHLGGVYGVAFM-DD-FNVVSSGEDACIRVWRLAT 611 (612)
Q Consensus 564 wd~~~~~~--~-----~~~~~~~h~~~v~~~~~~-~~-~~l~s~~~d~~i~~w~~~~ 611 (612)
|+...... . ......+|...|.+++|+ ++ .+|+|++.||+|++|++.+
T Consensus 279 w~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~ 335 (345)
T 3fm0_A 279 FQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQR 335 (345)
T ss_dssp EEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC
T ss_pred EEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecC
Confidence 99875220 1 122346899999999999 55 4899999999999999975
No 34
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=4.9e-44 Score=332.66 Aligned_cols=301 Identities=19% Similarity=0.284 Sum_probs=244.9
Q ss_pred CCC-ceeEEEEccCCCEEEEec-CCEEEEEeCCCCcee---eEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCC
Q 007229 17 ERG-RGILISGNPKTDTILYCN-GRSVLIRYLDKPLHV---EFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNG 91 (612)
Q Consensus 17 ~~~-~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~---~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~ 91 (612)
|.+ .|.+++|+|||++||+++ |+.|+|||++++... ....+|...|++++|+|+|++||+|+.|++|+|||+..+
T Consensus 14 h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~ 93 (345)
T 3fm0_A 14 HPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQD 93 (345)
T ss_dssp STTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC
T ss_pred CCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCC
Confidence 444 899999999999999998 899999999987643 224689999999999999999999999999999999876
Q ss_pred ce-eeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCC---ceeeeeccCCceEEEEEEcCCCCEEEEEee
Q 007229 92 FV-LKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSG---TTVGDFDGHSRRVLSCEFKPTRPFRIATCG 167 (612)
Q Consensus 92 ~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 167 (612)
.. ....+.+|...|.+++|+|++++|++++.++ .+++|+.+.+ +.+..+.+|...|.+++|+|+++ +|++++
T Consensus 94 ~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~---~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~-~l~s~s 169 (345)
T 3fm0_A 94 DFECVTTLEGHENEVKSVAWAPSGNLLATCSRDK---SVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE-LLASAS 169 (345)
T ss_dssp -EEEEEEECCCSSCEEEEEECTTSSEEEEEETTS---CEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSS-CEEEEE
T ss_pred CeEEEEEccCCCCCceEEEEeCCCCEEEEEECCC---eEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCC-EEEEEe
Confidence 53 4567889999999999999999999999998 5688887755 34677889999999999999999 599999
Q ss_pred cCCeEEEEeCCCCe--eeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCC---------------eeeeeec
Q 007229 168 EDFLVNFYEGPPFK--FKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGE---------------KIGEFSS 230 (612)
Q Consensus 168 ~d~~i~~wd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~---------------~~~~~~~ 230 (612)
.|+.|++||..+++ +...+.+|...|.+++|+|++++|++++.|++|++||..... ++..+
T Consensus 170 ~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~-- 247 (345)
T 3fm0_A 170 YDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTL-- 247 (345)
T ss_dssp TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEE--
T ss_pred CCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEe--
Confidence 99999999998775 446788999999999999999999999999999999964322 12222
Q ss_pred cCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEE
Q 007229 231 EDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISI 310 (612)
Q Consensus 231 ~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 310 (612)
...|...|.+++|+|++..|++++.|+.|++|+.............+
T Consensus 248 ~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~--------------------------------- 294 (345)
T 3fm0_A 248 SGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSL--------------------------------- 294 (345)
T ss_dssp CSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEE---------------------------------
T ss_pred cCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEE---------------------------------
Confidence 22388899999999999999999999999999983211111110000
Q ss_pred EEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeee
Q 007229 311 FSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSK 364 (612)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~ 364 (612)
......+|...|.+++|++.+..+|++++.||.|++|++..++...
T Consensus 295 --------~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~ 340 (345)
T 3fm0_A 295 --------TAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLH 340 (345)
T ss_dssp --------EEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC-----
T ss_pred --------EeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCcc
Confidence 0122357999999999996545799999999999999998876544
No 35
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=6.8e-44 Score=327.74 Aligned_cols=295 Identities=15% Similarity=0.250 Sum_probs=252.1
Q ss_pred CCCCCCCceeEEEEccCC-CEEEEec-CCEEEEEeCCC-----CceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEE
Q 007229 13 APSTERGRGILISGNPKT-DTILYCN-GRSVLIRYLDK-----PLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRI 85 (612)
Q Consensus 13 ~~~~~~~~v~~~~~s~d~-~~l~~~~-~~~i~i~~~~~-----~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~i 85 (612)
....|.+.|.+++|+|++ ++|++++ |+.|++|++.. +..+..+.+|...|++++|+|+|++|++|+.|++|+|
T Consensus 12 ~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~ 91 (319)
T 3frx_A 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL 91 (319)
T ss_dssp EECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred EEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEE
Confidence 345789999999999976 7888888 89999999864 3346678999999999999999999999999999999
Q ss_pred eecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCC-----
Q 007229 86 WGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRP----- 160 (612)
Q Consensus 86 wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----- 160 (612)
||+.+++ ....+.+|...|.+++|+|++++|++++.++ .+++|+.+ ++.+..+.+|...|.+++|+|...
T Consensus 92 wd~~~~~-~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~---~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 166 (319)
T 3frx_A 92 WDVATGE-TYQRFVGHKSDVMSVDIDKKASMIISGSRDK---TIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDS 166 (319)
T ss_dssp EETTTTE-EEEEEECCSSCEEEEEECTTSCEEEEEETTS---CEEEEETT-SCEEEEECCCSSCEEEEEECCC------C
T ss_pred EECCCCC-eeEEEccCCCcEEEEEEcCCCCEEEEEeCCC---eEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCc
Confidence 9999998 5568899999999999999999999999998 45666664 677888999999999999999543
Q ss_pred EEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEE
Q 007229 161 FRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYA 240 (612)
Q Consensus 161 ~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~ 240 (612)
..+++++.|+.|++||+.+++....+.+|...|.+++|+|++++|++++.||.|++||+.+++.+..+ .+...|.+
T Consensus 167 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~----~~~~~v~~ 242 (319)
T 3frx_A 167 VTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTL----SAQDEVFS 242 (319)
T ss_dssp CEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEE----ECCSCEEE
T ss_pred cEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEe----cCCCcEEE
Confidence 26999999999999999999999999999999999999999999999999999999999999998888 45678999
Q ss_pred EEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCc
Q 007229 241 VSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAP 320 (612)
Q Consensus 241 i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 320 (612)
++|+|++.++++++.+ .+++|++ .....+..+.... .
T Consensus 243 ~~~sp~~~~la~~~~~-~i~v~~~----~~~~~~~~~~~~~--------------------------------------~ 279 (319)
T 3frx_A 243 LAFSPNRYWLAAATAT-GIKVFSL----DPQYLVDDLRPEF--------------------------------------A 279 (319)
T ss_dssp EEECSSSSEEEEEETT-EEEEEEE----TTEEEEEEECCCC--------------------------------------T
T ss_pred EEEcCCCCEEEEEcCC-CcEEEEe----CcCeeeeccCccc--------------------------------------c
Confidence 9999999999888755 5999999 6665555443221 0
Q ss_pred eeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCc
Q 007229 321 LSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVG 360 (612)
Q Consensus 321 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~ 360 (612)
.....|...+.+++|++ ++++|++|+.||.|++||+.+.
T Consensus 280 ~~~~~~~~~v~~~~~sp-dg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 280 GYSKAAEPHAVSLAWSA-DGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp TCCGGGCCCEEEEEECT-TSSEEEEEETTSCEEEEEEEEC
T ss_pred ccccCcCcceeEEEECC-CCCEEEEeecCceEEEEEEeec
Confidence 11234667788899983 2899999999999999998653
No 36
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=3.2e-43 Score=323.60 Aligned_cols=297 Identities=25% Similarity=0.427 Sum_probs=258.0
Q ss_pred CceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeee
Q 007229 49 PLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSF 128 (612)
Q Consensus 49 ~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~ 128 (612)
......+.+|...|++++|+|++++||+++.||.|++|++.+++ ....+.+|...|.+++|+|++++|++++.++ .
T Consensus 13 ~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~---~ 88 (312)
T 4ery_A 13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-FEKTISGHKLGISDVAWSSDSNLLVSASDDK---T 88 (312)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-EEEEECCCSSCEEEEEECTTSSEEEEEETTS---E
T ss_pred ceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcc-cchhhccCCCceEEEEEcCCCCEEEEECCCC---E
Confidence 34556688999999999999999999999999999999999887 5567889999999999999999999999998 6
Q ss_pred EEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEE
Q 007229 129 VRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISV 208 (612)
Q Consensus 129 i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 208 (612)
+++|+.++++.+..+.+|...|.+++|+|+++ ++++++.|+.|++||+++++.+..+..|..+|.+++|+|++++|+++
T Consensus 89 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 167 (312)
T 4ery_A 89 LKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS 167 (312)
T ss_dssp EEEEETTTCCEEEEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred EEEEECCCCcEEEEEcCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEE
Confidence 78888889999999999999999999999999 59999999999999999999999999999999999999999999999
Q ss_pred EcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCcccccee
Q 007229 209 SSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDM 288 (612)
Q Consensus 209 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (612)
+.||.|++||+.+++.+..+. ..+..++..++|+|++++|++++.||.|++||+ .+++.+..+..+
T Consensus 168 ~~d~~i~~wd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~----~~~~~~~~~~~~-------- 233 (312)
T 4ery_A 168 SYDGLCRIWDTASGQCLKTLI--DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY----SKGKCLKTYTGH-------- 233 (312)
T ss_dssp ETTSCEEEEETTTCCEEEEEC--CSSCCCEEEEEECTTSSEEEEEETTTEEEEEET----TTTEEEEEECSS--------
T ss_pred eCCCcEEEEECCCCceeeEEe--ccCCCceEEEEECCCCCEEEEEcCCCeEEEEEC----CCCcEEEEEEec--------
Confidence 999999999999998887762 356778999999999999999999999999999 555544333211
Q ss_pred eeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeecee
Q 007229 289 LVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKK 368 (612)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~ 368 (612)
.....
T Consensus 234 --------------------------------------~~~~~------------------------------------- 238 (312)
T 4ery_A 234 --------------------------------------KNEKY------------------------------------- 238 (312)
T ss_dssp --------------------------------------CCSSS-------------------------------------
T ss_pred --------------------------------------CCceE-------------------------------------
Confidence 10000
Q ss_pred cccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeec
Q 007229 369 YDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKID 448 (612)
Q Consensus 369 ~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (612)
T Consensus 239 -------------------------------------------------------------------------------- 238 (312)
T 4ery_A 239 -------------------------------------------------------------------------------- 238 (312)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEc--CCCeEEEEecC
Q 007229 449 LGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASAD--GNREAIVWDRV 524 (612)
Q Consensus 449 ~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~d~~i~iwd~~ 524 (612)
.+......+++++|++|+.||.|++||+.+++. ...+.+|...|.+++|+|++++|++++ .|++|++|+.+
T Consensus 239 ---~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~--~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 239 ---CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI--VQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp ---CCCEEEECSSSCEEEECCTTSCEEEEETTTCCE--EEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred ---EEEEEEEeCCCcEEEEECCCCEEEEEECCCchh--hhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 011122335678899999999999999998876 678889999999999999999999986 69999999864
No 37
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.7e-43 Score=329.71 Aligned_cols=286 Identities=17% Similarity=0.243 Sum_probs=255.3
Q ss_pred CCCCCceeEEEEccCCCEEEEec-CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCc-
Q 007229 15 STERGRGILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGF- 92 (612)
Q Consensus 15 ~~~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~- 92 (612)
..|.+.|.+++|+||+++|++++ |+.|+|||..+++....+..|...|.+++|+|+|++||+++.|+.+++|++....
T Consensus 61 ~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~ 140 (354)
T 2pbi_B 61 KGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKN 140 (354)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTT
T ss_pred cCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEecccc
Confidence 36889999999999999999998 8999999999999999999999999999999999999999999999999986532
Q ss_pred ----eeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCC--CCEEEEEe
Q 007229 93 ----VLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPT--RPFRIATC 166 (612)
Q Consensus 93 ----~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~ 166 (612)
.....+..|...|.+++|+|+++.|++++.++ .+++|+.++++.+..+.+|...|.+++|+|+ ++ ++++|
T Consensus 141 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~---~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~-~l~sg 216 (354)
T 2pbi_B 141 ENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDG---TCALWDVESGQLLQSFHGHGADVLCLDLAPSETGN-TFVSG 216 (354)
T ss_dssp CCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTS---EEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCC-EEEEE
T ss_pred ccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCC---cEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCC-EEEEE
Confidence 13456788999999999999999999999998 6788888899999999999999999999884 55 69999
Q ss_pred ecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecC
Q 007229 167 GEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPD 246 (612)
Q Consensus 167 ~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 246 (612)
+.||.|++||+++++++..+.+|...|.+++|+|++++|++++.|++|++||++.++.+..+.. ..+...+.+++|+|+
T Consensus 217 s~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~-~~~~~~~~~~~~s~~ 295 (354)
T 2pbi_B 217 GCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSK-ESIIFGASSVDFSLS 295 (354)
T ss_dssp ETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC-TTCCSCEEEEEECTT
T ss_pred eCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcC-CCcccceeEEEEeCC
Confidence 9999999999999999999999999999999999999999999999999999998887766631 134457899999999
Q ss_pred CCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCc
Q 007229 247 GKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGH 326 (612)
Q Consensus 247 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 326 (612)
+++|++++.|+.|++||+ .+++.+ ..+.+|
T Consensus 296 g~~l~~g~~d~~i~vwd~----~~~~~~----------------------------------------------~~l~~h 325 (354)
T 2pbi_B 296 GRLLFAGYNDYTINVWDV----LKGSRV----------------------------------------------SILFGH 325 (354)
T ss_dssp SSEEEEEETTSCEEEEET----TTCSEE----------------------------------------------EEECCC
T ss_pred CCEEEEEECCCcEEEEEC----CCCceE----------------------------------------------EEEECC
Confidence 999999999999999998 555443 234568
Q ss_pred ccceeEEEEEecCCcEEEEEecCCcEEEEE
Q 007229 327 VKNVSTLTALKISQQTILSSSYDGAIIKWI 356 (612)
Q Consensus 327 ~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd 356 (612)
...|.+++|++ ++.+|++++.||.|++|+
T Consensus 326 ~~~v~~l~~sp-dg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 326 ENRVSTLRVSP-DGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp SSCEEEEEECT-TSSCEEEEETTSEEEEEC
T ss_pred CCcEEEEEECC-CCCEEEEEcCCCCEEecC
Confidence 89999999983 278999999999999995
No 38
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-43 Score=327.92 Aligned_cols=298 Identities=18% Similarity=0.258 Sum_probs=232.4
Q ss_pred CceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCC--eeeecc-cc-cccceEEEEECCCCCeEEEEEcCC
Q 007229 137 GTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPF--KFKLSH-RE-HSNFVNCIRFSPDGSKLISVSSDR 212 (612)
Q Consensus 137 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~--~~~~~~-~~-~~~~v~~~~~s~~~~~l~~~~~dg 212 (612)
.+.+..+.+|..+|.+++|+|+ +|++|+.|++|++||+..+ .....+ .+ |...|.+++|+|++++|++++.|+
T Consensus 4 ~~~~~~~~~h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~ 80 (330)
T 2hes_X 4 INLIKSLKLYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDS 80 (330)
T ss_dssp CEEEEEEECCSSCEEEEEEETT---EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTS
T ss_pred cccceeeccCCCceeeeccCCC---EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCC
Confidence 4567788999999999999998 6999999999999999875 344444 34 999999999999999999999999
Q ss_pred cEEEEecCCC-------CeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCcccc
Q 007229 213 KGLIYDGKSG-------EKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAV 285 (612)
Q Consensus 213 ~i~vwd~~~~-------~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 285 (612)
+|++||++.. +.+..+ .+|...|.+++|+|++++|++++.|++|++||+.......+.+
T Consensus 81 ~v~iw~~~~~~~~~~~~~~~~~~---~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~----------- 146 (330)
T 2hes_X 81 TVSIWAKEESADRTFEMDLLAII---EGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECI----------- 146 (330)
T ss_dssp CEEEEEC-------CCCEEEEEE---C----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEE-----------
T ss_pred cEEEEEcccCcCccccceeEEEE---cCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEE-----------
Confidence 9999998542 233344 4899999999999999999999999999999981100000000
Q ss_pred ceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeee
Q 007229 286 EDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKL 365 (612)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~ 365 (612)
..+.+
T Consensus 147 -----------------------------------~~~~~---------------------------------------- 151 (330)
T 2hes_X 147 -----------------------------------SVLQE---------------------------------------- 151 (330)
T ss_dssp -----------------------------------EEECC----------------------------------------
T ss_pred -----------------------------------EEecc----------------------------------------
Confidence 00000
Q ss_pred ceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeeccccee
Q 007229 366 EKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMS 445 (612)
Q Consensus 366 ~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (612)
T Consensus 152 -------------------------------------------------------------------------------- 151 (330)
T 2hes_X 152 -------------------------------------------------------------------------------- 151 (330)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCC--CcEEEEEcCCCeEEEEec
Q 007229 446 KIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPD--VSMFASADGNREAIVWDR 523 (612)
Q Consensus 446 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~--~~~l~~~~~d~~i~iwd~ 523 (612)
|...|.+++|+|++++|++++.|+.|++||..++.......+.+|.+.|.+++|+|+ +.+|++++.|++|++||+
T Consensus 152 ---h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~ 228 (330)
T 2hes_X 152 ---HSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKY 228 (330)
T ss_dssp ---CSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEE
T ss_pred ---CCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEe
Confidence 223578899999999999999999999999887644446788999999999999998 779999999999999999
Q ss_pred CCc--------ceeeeccc-ccccceeEEEecCCCcEEEEeecCcEEEEEEccCCCccee-eeeccccc-CeeeEEEec-
Q 007229 524 VSK--------EVKLNNML-FHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRI-TIKNAHLG-GVYGVAFMD- 591 (612)
Q Consensus 524 ~~~--------~~~~~~~~-~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~h~~-~v~~~~~~~- 591 (612)
..+ ... ..+. .|...|.+++|++++ +|++++.||.|++||...+..+.. ..+.+|.. .|.+++|++
T Consensus 229 ~~~~~~~~~~~~~~-~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~ 306 (330)
T 2hes_X 229 MGDDEDDQQEWVCE-AILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLEL 306 (330)
T ss_dssp EEECTTSCEEEEEE-EECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC--
T ss_pred cCCCccccceeEEe-eecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecC
Confidence 765 222 2333 389999999999765 899999999999999987321222 33467887 899999983
Q ss_pred --CceEEEccCCCeEEEEEecc
Q 007229 592 --DFNVVSSGEDACIRVWRLAT 611 (612)
Q Consensus 592 --~~~l~s~~~d~~i~~w~~~~ 611 (612)
+++|++++.||+|++|++++
T Consensus 307 ~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 307 NGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp ---CCEEEEETTSEEEEEEC--
T ss_pred CCceEEEEecCCCcEEEEEecc
Confidence 56899999999999999875
No 39
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=2.3e-43 Score=328.38 Aligned_cols=304 Identities=21% Similarity=0.318 Sum_probs=240.4
Q ss_pred ceeeeeccCCceEEEEEE-----cC-CCCEEEEEeecCCeEEEEeCCCC-------eeeecccccccceEEEEECCCCCe
Q 007229 138 TTVGDFDGHSRRVLSCEF-----KP-TRPFRIATCGEDFLVNFYEGPPF-------KFKLSHREHSNFVNCIRFSPDGSK 204 (612)
Q Consensus 138 ~~~~~~~~~~~~v~~~~~-----~~-~~~~~l~~~~~d~~i~~wd~~~~-------~~~~~~~~~~~~v~~~~~s~~~~~ 204 (612)
+....+.+|.+.|++++| ++ +++ +|++|+.|++|++||+.+. .....+.+|...|.+++|+|++.+
T Consensus 12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~-~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~ 90 (343)
T 2xzm_R 12 VKRGILEGHSDWVTSIVAGFSQKENEDSP-VLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCF 90 (343)
T ss_dssp EEEEEEECCSSCEEEEEECCCSSTTCCCC-EEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTE
T ss_pred eeeeeeccchhhhhheeeEEEeecCCCCC-EEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCE
Confidence 345678999999999999 77 777 6999999999999998753 455668899999999999999999
Q ss_pred EEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccc
Q 007229 205 LISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNA 284 (612)
Q Consensus 205 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 284 (612)
|++++.|++|++||+++++.+..+ .+|...|.+++|+|++++|++++.|+.|++||+ .. ......
T Consensus 91 l~s~s~D~~v~lwd~~~~~~~~~~---~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~----~~-~~~~~~------- 155 (343)
T 2xzm_R 91 AISSSWDKTLRLWDLRTGTTYKRF---VGHQSEVYSVAFSPDNRQILSAGAEREIKLWNI----LG-ECKFSS------- 155 (343)
T ss_dssp EEEEETTSEEEEEETTSSCEEEEE---ECCCSCEEEEEECSSTTEEEEEETTSCEEEEES----SS-CEEEEC-------
T ss_pred EEEEcCCCcEEEEECCCCcEEEEE---cCCCCcEEEEEECCCCCEEEEEcCCCEEEEEec----cC-Cceeee-------
Confidence 999999999999999999998887 389999999999999999999999999999998 32 111110
Q ss_pred cceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeee
Q 007229 285 VEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSK 364 (612)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~ 364 (612)
....+|...+.+++|++....
T Consensus 156 ------------------------------------~~~~~~~~~v~~~~~~~~~~~----------------------- 176 (343)
T 2xzm_R 156 ------------------------------------AEKENHSDWVSCVRYSPIMKS----------------------- 176 (343)
T ss_dssp ------------------------------------CTTTSCSSCEEEEEECCCCCS-----------------------
T ss_pred ------------------------------------ecccCCCceeeeeeecccccc-----------------------
Confidence 001235555555555421000
Q ss_pred eceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccce
Q 007229 365 LEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVM 444 (612)
Q Consensus 365 ~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (612)
T Consensus 177 -------------------------------------------------------------------------------- 176 (343)
T 2xzm_R 177 -------------------------------------------------------------------------------- 176 (343)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecC
Q 007229 445 SKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRV 524 (612)
Q Consensus 445 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~ 524 (612)
...+.|.+.++++++.||.|++||.. ... ...+.+|...|.+++|+|++++|++++.|+.|++||+.
T Consensus 177 ----------~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~--~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~ 243 (343)
T 2xzm_R 177 ----------ANKVQPFAPYFASVGWDGRLKVWNTN-FQI--RYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDIL 243 (343)
T ss_dssp ----------CSCCCSSCCEEEEEETTSEEEEEETT-TEE--EEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESS
T ss_pred ----------ccccCCCCCEEEEEcCCCEEEEEcCC-Cce--eEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECC
Confidence 00123455789999999999999954 333 46788999999999999999999999999999999995
Q ss_pred CcceeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeec-----------ccccCeeeEEEe-cC
Q 007229 525 SKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKN-----------AHLGGVYGVAFM-DD 592 (612)
Q Consensus 525 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-----------~h~~~v~~~~~~-~~ 592 (612)
........+. +...|.+++|+|++.+|+++ .|+.|++||+.+.....+..+. +|...|.+++|+ ++
T Consensus 244 ~~~~~~~~~~-~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g 321 (343)
T 2xzm_R 244 NLTYPQREFD-AGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALG 321 (343)
T ss_dssp CCSSCSEEEE-CSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSS
T ss_pred CCcccceeec-CCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCC
Confidence 5443323332 55679999999999887755 5777999999873311112332 788899999999 89
Q ss_pred ceEEEccCCCeEEEEEecc
Q 007229 593 FNVVSSGEDACIRVWRLAT 611 (612)
Q Consensus 593 ~~l~s~~~d~~i~~w~~~~ 611 (612)
++|++|+.||.|++|++++
T Consensus 322 ~~l~sg~~Dg~v~~w~~~~ 340 (343)
T 2xzm_R 322 KKLFAGFTDGVIRTFSFET 340 (343)
T ss_dssp CCEEEEETTSEEEEEEEEE
T ss_pred CeEEEecCCceEEEEEEEc
Confidence 9999999999999999976
No 40
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-45 Score=352.90 Aligned_cols=333 Identities=14% Similarity=0.192 Sum_probs=273.9
Q ss_pred CCCceEEEEECCCCC-EEEEe----------eCcCeEEEeecCCCcee-eeeeeecCCCeEEEEECCCCCEEEEEeCCCC
Q 007229 58 HGYPVTVARYSPNGE-WIASA----------DVSGSVRIWGTHNGFVL-KNEFKVLSGRIDDLQWSPDGLRIVACGDGKG 125 (612)
Q Consensus 58 h~~~v~~~~~s~d~~-~las~----------~~d~~i~iwd~~~~~~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~ 125 (612)
+...|.+++|+|+++ +||++ +.|+.|+|||+.+++.. ......|...|.+++|+|++++|++++.++
T Consensus 11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg- 89 (416)
T 2pm9_A 11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNG- 89 (416)
T ss_dssp EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSS-
T ss_pred hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCC-
Confidence 345789999999997 99999 88999999999987531 112235889999999999999999999887
Q ss_pred eeeEEEEEecC----CceeeeeccCCceEEEEEEcCC-CCEEEEEeecCCeEEEEeCCCCe------eeec---cccccc
Q 007229 126 KSFVRAFMWDS----GTTVGDFDGHSRRVLSCEFKPT-RPFRIATCGEDFLVNFYEGPPFK------FKLS---HREHSN 191 (612)
Q Consensus 126 ~~~i~i~~~~~----~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~------~~~~---~~~~~~ 191 (612)
.+++|+.+. .+.+..+.+|...|.+++|+|+ +. ++++++.|+.|++||+.+++ .... +..|..
T Consensus 90 --~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 166 (416)
T 2pm9_A 90 --SLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDN-VLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVD 166 (416)
T ss_dssp --CEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTT-BEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSC
T ss_pred --eEEEeecccccccccchhhccCCccceEEEEEcCCCCC-EEEEEcCCCeEEEEECCCCccccccccccccccccCCCC
Confidence 467777776 4588899999999999999998 66 69999999999999999886 3333 467999
Q ss_pred ceEEEEECCC-CCeEEEEEcCCcEEEEecCCCCeeeeeeccC---CccccEEEEEEecCC-CEEEEEeCCC---cEEEEE
Q 007229 192 FVNCIRFSPD-GSKLISVSSDRKGLIYDGKSGEKIGEFSSED---GHHGSIYAVSWSPDG-KKVLTVSADK---SAKVWE 263 (612)
Q Consensus 192 ~v~~~~~s~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~---~~~~~v~~i~~~~~~-~~l~~~~~dg---~i~iw~ 263 (612)
.|.+++|+|+ +.+|++++.|+.|++||+++++.+..+.... +|...+.+++|+|++ .++++++.|+ .|++||
T Consensus 167 ~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d 246 (416)
T 2pm9_A 167 EVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWD 246 (416)
T ss_dssp CCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEE
T ss_pred CeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEe
Confidence 9999999999 7899999999999999999999888873211 127889999999997 6899999998 999999
Q ss_pred eecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeec-CcccceeEEEEEecCCcE
Q 007229 264 ILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFS-GHVKNVSTLTALKISQQT 342 (612)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~ 342 (612)
+ ..+. .+...+. +
T Consensus 247 ~----~~~~---------------------------------------------~~~~~~~~~----------------- 260 (416)
T 2pm9_A 247 L----RNAN---------------------------------------------TPLQTLNQG----------------- 260 (416)
T ss_dssp T----TSTT---------------------------------------------SCSBCCCSC-----------------
T ss_pred C----CCCC---------------------------------------------CCcEEeecC-----------------
Confidence 8 3221 0000011 1
Q ss_pred EEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCC
Q 007229 343 ILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALS 422 (612)
Q Consensus 343 l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (612)
T Consensus 261 -------------------------------------------------------------------------------- 260 (416)
T 2pm9_A 261 -------------------------------------------------------------------------------- 260 (416)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcEEEEEeeccEEEeecccceeeecccceEEEEEEcc-CCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEE
Q 007229 423 SPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAP-DGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQ 501 (612)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~ 501 (612)
+...+.+++|+| ++++|++++.||.|++||+.+++. ...+..|...|.+++
T Consensus 261 --------------------------~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~--~~~~~~~~~~v~~~~ 312 (416)
T 2pm9_A 261 --------------------------HQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQ--LSQFPARGNWCFKTK 312 (416)
T ss_dssp --------------------------CSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCE--EEEEECSSSCCCCEE
T ss_pred --------------------------ccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCcc--ceeecCCCCceEEEE
Confidence 123477889999 899999999999999999998876 677889999999999
Q ss_pred EcCCC-cEEEEEcCCCeEEEEecCCcceeeec----------------------------------ccccccceeEEEec
Q 007229 502 YSPDV-SMFASADGNREAIVWDRVSKEVKLNN----------------------------------MLFHTARINCLAWS 546 (612)
Q Consensus 502 ~s~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~----------------------------------~~~~~~~i~~~~~s 546 (612)
|+|++ .+|++++.|+.|++||+.+....... ...|..++++++|+
T Consensus 313 ~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 392 (416)
T 2pm9_A 313 FAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWA 392 (416)
T ss_dssp ECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEE
T ss_pred ECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEe
Confidence 99998 89999999999999999877643211 11156788899999
Q ss_pred CCCcEEEEeecCcEEEEEEccC
Q 007229 547 PSSTMVATGSIDTCVIIYEIGK 568 (612)
Q Consensus 547 ~~~~~l~s~~~d~~i~iwd~~~ 568 (612)
|||++||+++.|+.|+||++.+
T Consensus 393 ~dg~~la~~~~d~~v~~w~~~~ 414 (416)
T 2pm9_A 393 FGGKLVQITPDGKGVSITNPKI 414 (416)
T ss_dssp TTTEEECBCTTSSCBCCBCCCC
T ss_pred eCCeEEEEeCCCCeEEEEEecc
Confidence 9999999999999999999986
No 41
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6e-45 Score=350.76 Aligned_cols=344 Identities=9% Similarity=0.094 Sum_probs=275.9
Q ss_pred CceEEEEEEcCCCCEEEEEe----------ecCCeEEEEeCCCCee---eecccccccceEEEEECCCCCeEEEEEcCCc
Q 007229 147 SRRVLSCEFKPTRPFRIATC----------GEDFLVNFYEGPPFKF---KLSHREHSNFVNCIRFSPDGSKLISVSSDRK 213 (612)
Q Consensus 147 ~~~v~~~~~~~~~~~~l~~~----------~~d~~i~~wd~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 213 (612)
...|.+++|+|+++.+++++ +.|+.|++||+.+++. +..+ .|...|.+++|+|++++|++++.||.
T Consensus 12 ~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~ 90 (416)
T 2pm9_A 12 FSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNGS 90 (416)
T ss_dssp EEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSSC
T ss_pred hhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCCe
Confidence 35788999999987569999 8899999999998763 3333 58899999999999999999999999
Q ss_pred EEEEecCC----CCeeeeeeccCCccccEEEEEEecC-CCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCcccccee
Q 007229 214 GLIYDGKS----GEKIGEFSSEDGHHGSIYAVSWSPD-GKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDM 288 (612)
Q Consensus 214 i~vwd~~~----~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (612)
|++||+.+ .+....+ .+|...|.+++|+|+ +++|++++.||.|++||+ ..++.....
T Consensus 91 v~vw~~~~~~~~~~~~~~~---~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~----~~~~~~~~~----------- 152 (416)
T 2pm9_A 91 LELYSTNEANNAINSMARF---SNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDM----NKCTESPSN----------- 152 (416)
T ss_dssp EEEECCSSTTSCCCEEEEC---CCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBT----TTTSSCTTT-----------
T ss_pred EEEeecccccccccchhhc---cCCccceEEEEEcCCCCCEEEEEcCCCeEEEEEC----CCCcccccc-----------
Confidence 99999987 3455555 489999999999998 899999999999999999 443310000
Q ss_pred eeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeecee
Q 007229 289 LVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKK 368 (612)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~ 368 (612)
...........|...+.+++|++..+.++++++.||.|++||+++++.......
T Consensus 153 --------------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~ 206 (416)
T 2pm9_A 153 --------------------------YTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSY 206 (416)
T ss_dssp --------------------------CCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECC
T ss_pred --------------------------ccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEec
Confidence 000011234568889999999965578999999999999999987665433220
Q ss_pred cccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeec
Q 007229 369 YDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKID 448 (612)
Q Consensus 369 ~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (612)
+.. ...
T Consensus 207 ~~~--------------------------------------------------------------------------~~~ 212 (416)
T 2pm9_A 207 TSP--------------------------------------------------------------------------NSG 212 (416)
T ss_dssp CCC--------------------------------------------------------------------------SSC
T ss_pred ccc--------------------------------------------------------------------------ccc
Confidence 000 000
Q ss_pred ccceEEEEEEccCC-CeEEEEecCC---eEEEEEccCcccccceeec-cccCceEEEEEcC-CCcEEEEEcCCCeEEEEe
Q 007229 449 LGFTVTACAIAPDG-SEAIVGGQNG---KLHIYSISGNTLTEEMVLE-KHRGAITVIQYSP-DVSMFASADGNREAIVWD 522 (612)
Q Consensus 449 ~~~~i~~~~~s~~~-~~l~~~~~dg---~v~i~d~~~~~~~~~~~~~-~~~~~i~~~~~s~-~~~~l~~~~~d~~i~iwd 522 (612)
+...+.+++|+|++ .++++++.|+ .|++||++++.. ....+. +|...|++++|+| ++++|++++.|+.|++||
T Consensus 213 ~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd 291 (416)
T 2pm9_A 213 IKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANT-PLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWN 291 (416)
T ss_dssp CCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTS-CSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEEC
T ss_pred cCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCC-CcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEee
Confidence 13468999999997 6899999998 999999998632 245666 8999999999999 999999999999999999
Q ss_pred cCCcceeeecccccccceeEEEecCCC-cEEEEeecCcEEEEEEccCCCcceee--------------------------
Q 007229 523 RVSKEVKLNNMLFHTARINCLAWSPSS-TMVATGSIDTCVIIYEIGKPASSRIT-------------------------- 575 (612)
Q Consensus 523 ~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~-------------------------- 575 (612)
+.+++.+ ..+.+|...|++++|+|++ .+|++++.|+.|++||+.... ....
T Consensus 292 ~~~~~~~-~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (416)
T 2pm9_A 292 PESAEQL-SQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLT-NTLDEQETETKQQESETDFWNNVSREESKE 369 (416)
T ss_dssp SSSCCEE-EEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCC-CSSCC----------------------CCS
T ss_pred CCCCccc-eeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCC-CCcccccccccccCCccccccccccccccc
Confidence 9999886 5577799999999999999 899999999999999998733 2111
Q ss_pred --------eecccccCeeeEEEe-cCceEEEccCCCeEEEEEeccC
Q 007229 576 --------IKNAHLGGVYGVAFM-DDFNVVSSGEDACIRVWRLATE 612 (612)
Q Consensus 576 --------~~~~h~~~v~~~~~~-~~~~l~s~~~d~~i~~w~~~~~ 612 (612)
....|..++.+++|+ ++++|++++.|+.|++|+++++
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 370 KPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp CCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred ccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 011267788899999 9999999999999999999875
No 42
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.1e-42 Score=329.91 Aligned_cols=310 Identities=20% Similarity=0.284 Sum_probs=248.9
Q ss_pred EEEeecCCCceee---eeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCc-----------
Q 007229 83 VRIWGTHNGFVLK---NEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSR----------- 148 (612)
Q Consensus 83 i~iwd~~~~~~~~---~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~----------- 148 (612)
..+|+....+... .....|...|.+++|+|||++|++++++ .+++|...+++.+..+..|..
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~la~g~~~----~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~ 117 (393)
T 1erj_A 42 YILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGCNK----TTQVYRVSDGSLVARLSDDSAANKDPENLNTS 117 (393)
T ss_dssp EEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSSEEEEECBS----CEEEEETTTCCEEEEECC--------------
T ss_pred EEEECCCCCcccCceeEEecCCCCEEEEEEECCCCCEEEEEcCC----cEEEEEecCCCEEEEecCcccccccccccccc
Confidence 4466555443211 1223699999999999999999998754 378888889988888776542
Q ss_pred -------eEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCC
Q 007229 149 -------RVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKS 221 (612)
Q Consensus 149 -------~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~ 221 (612)
.|.+++|+|+++ +|++|+.|+.|++||+.+++.+..+.+|...|.+++|+|++++|++++.|++|++||+++
T Consensus 118 ~~~~~~~~v~~v~~s~dg~-~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~ 196 (393)
T 1erj_A 118 SSPSSDLYIRSVCFSPDGK-FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRT 196 (393)
T ss_dssp ---CCCCBEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred ccCCCceeEEEEEECCCCC-EEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCC
Confidence 499999999999 599999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeeeeeccCCccccEEEEEEec-CCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEE
Q 007229 222 GEKIGEFSSEDGHHGSIYAVSWSP-DGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLI 300 (612)
Q Consensus 222 ~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (612)
++....+ .+...+.+++|+| ++++|++++.||.|++||+ .++..+..+....
T Consensus 197 ~~~~~~~----~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~----~~~~~~~~~~~~~------------------- 249 (393)
T 1erj_A 197 GQCSLTL----SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDS----ETGFLVERLDSEN------------------- 249 (393)
T ss_dssp TEEEEEE----ECSSCEEEEEECSTTCCEEEEEETTSCEEEEET----TTCCEEEEEC----------------------
T ss_pred CeeEEEE----EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEEC----CCCcEEEeecccc-------------------
Confidence 9988877 5677899999999 8999999999999999998 5554443321110
Q ss_pred EEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeec
Q 007229 301 TVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVE 380 (612)
Q Consensus 301 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~ 380 (612)
....+|
T Consensus 250 --------------------~~~~~h------------------------------------------------------ 255 (393)
T 1erj_A 250 --------------------ESGTGH------------------------------------------------------ 255 (393)
T ss_dssp -----------------------CCC------------------------------------------------------
T ss_pred --------------------cCCCCC------------------------------------------------------
Confidence 000112
Q ss_pred cEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEcc
Q 007229 381 EVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAP 460 (612)
Q Consensus 381 ~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 460 (612)
...|.+++|+|
T Consensus 256 ---------------------------------------------------------------------~~~v~~v~~~~ 266 (393)
T 1erj_A 256 ---------------------------------------------------------------------KDSVYSVVFTR 266 (393)
T ss_dssp ---------------------------------------------------------------------SSCEEEEEECT
T ss_pred ---------------------------------------------------------------------CCCEEEEEECC
Confidence 23466777777
Q ss_pred CCCeEEEEecCCeEEEEEccCccc----------ccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceee
Q 007229 461 DGSEAIVGGQNGKLHIYSISGNTL----------TEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKL 530 (612)
Q Consensus 461 ~~~~l~~~~~dg~v~i~d~~~~~~----------~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~ 530 (612)
++++|++|+.||.|++||+.+... .....+.+|...|.+++|+|++++|++++.|+.|++||+.+++.+
T Consensus 267 ~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~- 345 (393)
T 1erj_A 267 DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPL- 345 (393)
T ss_dssp TSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEE-
T ss_pred CCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEE-
Confidence 777777777788888887764321 123456789999999999999999999999999999999999886
Q ss_pred ecccccccceeEEEecC------CCcEEEEeecCcEEEEEEccC
Q 007229 531 NNMLFHTARINCLAWSP------SSTMVATGSIDTCVIIYEIGK 568 (612)
Q Consensus 531 ~~~~~~~~~i~~~~~s~------~~~~l~s~~~d~~i~iwd~~~ 568 (612)
..+.+|...|.+++|++ ++++||+|+.||+|+||++..
T Consensus 346 ~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 346 LMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp EEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred EEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 56788999999999886 688999999999999999875
No 43
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1e-43 Score=342.45 Aligned_cols=348 Identities=16% Similarity=0.184 Sum_probs=285.2
Q ss_pred eEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeee
Q 007229 105 IDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKL 184 (612)
Q Consensus 105 i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~ 184 (612)
+++++|+|++++|++++.++ .+++|+..+++....+..| ..+....|+|+++ +|++++.||.|++||+.+++...
T Consensus 59 ~~~~~~s~~g~~l~~~~~d~---~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~ 133 (420)
T 3vl1_A 59 GKGNTFEKVGSHLYKARLDG---HDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMR-RFILGTTEGDIKVLDSNFNLQRE 133 (420)
T ss_dssp CTTCEEEEEETTEEEEEETT---EEEEEECCSEETTTTSCSC-CEEEEEEECSSSC-EEEEEETTSCEEEECTTSCEEEE
T ss_pred ccceeeeecCCeEEEEEcCC---cEEEEEecccceeeEEecC-CceEEEEEecCCC-EEEEEECCCCEEEEeCCCcceee
Confidence 45789999999999999988 5677777777777777766 5566668899998 59999999999999999999998
Q ss_pred cccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEe
Q 007229 185 SHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 185 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~ 264 (612)
.+.+|...|.+++|+|++++|++++.|+.|++||+.+++.+..+ .+|...|.+++|+|++++|++++.||.|++||+
T Consensus 134 ~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~---~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~ 210 (420)
T 3vl1_A 134 IDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTL---IGHRATVTDIAIIDRGRNVLSASLDGTIRLWEC 210 (420)
T ss_dssp ETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEE---ECCSSCEEEEEEETTTTEEEEEETTSCEEEEET
T ss_pred ecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEE---cCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeEC
Confidence 88999999999999999999999999999999999999988888 389999999999999999999999999999999
Q ss_pred ecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEE
Q 007229 265 LEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTIL 344 (612)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 344 (612)
.+++.+..+.... .|...+.++.+.+.....
T Consensus 211 ----~~~~~~~~~~~~~-------------------------------------------~~~~~v~~~~~~~~~~~~-- 241 (420)
T 3vl1_A 211 ----GTGTTIHTFNRKE-------------------------------------------NPHDGVNSIALFVGTDRQ-- 241 (420)
T ss_dssp ----TTTEEEEEECBTT-------------------------------------------BTTCCEEEEEEEECCCSS--
T ss_pred ----CCCceeEEeecCC-------------------------------------------CCCCCccEEEEecCCcce--
Confidence 7777776654431 255566666665311110
Q ss_pred EEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCC
Q 007229 345 SSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSP 424 (612)
Q Consensus 345 ~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (612)
+
T Consensus 242 -------~------------------------------------------------------------------------ 242 (420)
T 3vl1_A 242 -------L------------------------------------------------------------------------ 242 (420)
T ss_dssp -------C------------------------------------------------------------------------
T ss_pred -------e------------------------------------------------------------------------
Confidence 0
Q ss_pred cEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcC
Q 007229 425 ELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSP 504 (612)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~ 504 (612)
...+...+.+++|+|++++|++|+.||.|++||+.+++.. ......|...|++++|+|
T Consensus 243 ---------------------~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~v~~~~~~~ 300 (420)
T 3vl1_A 243 ---------------------HEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQT-IQLPSKFTCSCNSLTVDG 300 (420)
T ss_dssp ---------------------GGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEE-EEECCTTSSCEEEEEECS
T ss_pred ---------------------eecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCcee-EEcccccCCCceeEEEeC
Confidence 0001234677889999999999999999999999887652 233456889999999999
Q ss_pred CCc-EEEEEcCCCeEEEEecCCcceeeecccc-cccceeEEEecCCCcEEEEeecCcEEEEEEccCCCc-------ceee
Q 007229 505 DVS-MFASADGNREAIVWDRVSKEVKLNNMLF-HTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPAS-------SRIT 575 (612)
Q Consensus 505 ~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~-------~~~~ 575 (612)
+++ +|++++.||.|++||+.+++.....+.. |...|.++.+ |++++|++++.|+.|++|++..+.. ....
T Consensus 301 ~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~ 379 (420)
T 3vl1_A 301 NNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPESERPAIEFETPT 379 (420)
T ss_dssp SCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCE
T ss_pred CCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCCCCCccceeccCcc
Confidence 998 9999999999999999998653344544 6778888855 5788999999999999999987320 1233
Q ss_pred eecccccCeeeEEEe-cCc---eEEEccCCCeEEEEEecc
Q 007229 576 IKNAHLGGVYGVAFM-DDF---NVVSSGEDACIRVWRLAT 611 (612)
Q Consensus 576 ~~~~h~~~v~~~~~~-~~~---~l~s~~~d~~i~~w~~~~ 611 (612)
.+..|.+.|.+++|+ ++. .+++++.+|.+.+|+++.
T Consensus 380 ~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 380 FLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp EECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred EEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 466788999999999 777 788899999999999875
No 44
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=5.6e-43 Score=331.90 Aligned_cols=285 Identities=16% Similarity=0.225 Sum_probs=244.8
Q ss_pred CCCCceeEEEEccCCCEEEEecCCEEEEEeCCCCceeeEeccCCC------------------ceEEEEECCCCCEEEEe
Q 007229 16 TERGRGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGY------------------PVTVARYSPNGEWIASA 77 (612)
Q Consensus 16 ~~~~~v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~~~~h~~------------------~v~~~~~s~d~~~las~ 77 (612)
.|.+.|++++|||||++||+++++.+.+|++.+++.+..+.+|.. .|++++|+|||++||+|
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~ 141 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATG 141 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEcCCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEE
Confidence 378899999999999999999999999999999998888876643 39999999999999999
Q ss_pred eCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcC
Q 007229 78 DVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKP 157 (612)
Q Consensus 78 ~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~ 157 (612)
+.|+.|+|||+.+++ ....+.+|...|.+++|+|++++|++++.++ .+++|+..+++....+. +...+.+++|+|
T Consensus 142 ~~d~~i~iwd~~~~~-~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~---~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~ 216 (393)
T 1erj_A 142 AEDRLIRIWDIENRK-IVMILQGHEQDIYSLDYFPSGDKLVSGSGDR---TVRIWDLRTGQCSLTLS-IEDGVTTVAVSP 216 (393)
T ss_dssp ETTSCEEEEETTTTE-EEEEECCCSSCEEEEEECTTSSEEEEEETTS---EEEEEETTTTEEEEEEE-CSSCEEEEEECS
T ss_pred cCCCeEEEEECCCCc-EEEEEccCCCCEEEEEEcCCCCEEEEecCCC---cEEEEECCCCeeEEEEE-cCCCcEEEEEEC
Confidence 999999999999987 5567889999999999999999999999998 67888888888877776 567899999999
Q ss_pred -CCCEEEEEeecCCeEEEEeCCCCeeeecc-------cccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCe-----
Q 007229 158 -TRPFRIATCGEDFLVNFYEGPPFKFKLSH-------REHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEK----- 224 (612)
Q Consensus 158 -~~~~~l~~~~~d~~i~~wd~~~~~~~~~~-------~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~----- 224 (612)
++. ++++|+.|+.|++||+.+++.+..+ .+|...|.+++|+|++++|++++.|+.|++||+++...
T Consensus 217 ~~~~-~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~ 295 (393)
T 1erj_A 217 GDGK-YIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSK 295 (393)
T ss_dssp TTCC-EEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC----------
T ss_pred CCCC-EEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCccccc
Confidence 677 6999999999999999998877665 57999999999999999999999999999999976432
Q ss_pred -------eeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCC
Q 007229 225 -------IGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQND 297 (612)
Q Consensus 225 -------~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (612)
...+ .+|...|.+++|+|++++|++++.|+.|++||+ .+++.+.
T Consensus 296 ~~~~~~~~~~~---~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~----~~~~~~~---------------------- 346 (393)
T 1erj_A 296 TPNSGTCEVTY---IGHKDFVLSVATTQNDEYILSGSKDRGVLFWDK----KSGNPLL---------------------- 346 (393)
T ss_dssp -----CEEEEE---ECCSSCEEEEEECGGGCEEEEEETTSEEEEEET----TTCCEEE----------------------
T ss_pred CCCCCcceEEE---ecccCcEEEEEECCCCCEEEEEeCCCeEEEEEC----CCCeEEE----------------------
Confidence 2333 378899999999999999999999999999998 6555443
Q ss_pred EEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEe-----cCCcEEEEEecCCcEEEEEcCC
Q 007229 298 HLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALK-----ISQQTILSSSYDGAIIKWIRGV 359 (612)
Q Consensus 298 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~l~~~~~dg~i~~wd~~~ 359 (612)
.+.+|...|.++++.+ +++.+|++|+.||.|++|++..
T Consensus 347 ------------------------~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 347 ------------------------MLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp ------------------------EEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred ------------------------EECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 3456888899999874 2478999999999999998754
No 45
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=3.2e-43 Score=338.94 Aligned_cols=282 Identities=10% Similarity=0.044 Sum_probs=240.4
Q ss_pred ceeEEEEccCCCEEEEec-CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeee
Q 007229 20 RGILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEF 98 (612)
Q Consensus 20 ~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~ 98 (612)
.+++++|+|+|++|++++ ++.|++||+.+++....+..| ..+....|+|++++||+++.||.|++||+.+++ ....+
T Consensus 58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~ 135 (420)
T 3vl1_A 58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNL-QREID 135 (420)
T ss_dssp CCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCE-EEEET
T ss_pred cccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcc-eeeec
Confidence 355899999999999998 899999999988887777766 556666899999999999999999999999887 55566
Q ss_pred eecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCC
Q 007229 99 KVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGP 178 (612)
Q Consensus 99 ~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 178 (612)
..|...|.+++|+|++++|++++.++ .+++|+.++++.+..+.+|...|.+++|+|+++ +|++++.|+.|++||+.
T Consensus 136 ~~h~~~v~~~~~~~~~~~l~s~s~d~---~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~d~~v~iwd~~ 211 (420)
T 3vl1_A 136 QAHVSEITKLKFFPSGEALISSSQDM---QLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGR-NVLSASLDGTIRLWECG 211 (420)
T ss_dssp TSSSSCEEEEEECTTSSEEEEEETTS---EEEEEETTTCCCCEEEECCSSCEEEEEEETTTT-EEEEEETTSCEEEEETT
T ss_pred ccccCccEEEEECCCCCEEEEEeCCC---eEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCC-EEEEEcCCCcEEEeECC
Confidence 78999999999999999999999988 678888889999999999999999999999999 59999999999999999
Q ss_pred CCeeeecccc---ccc---------------------ceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCc
Q 007229 179 PFKFKLSHRE---HSN---------------------FVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGH 234 (612)
Q Consensus 179 ~~~~~~~~~~---~~~---------------------~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 234 (612)
+++.+..+.. |.. .+.+++|+|++++|++++.||.|++||+.+++....+ ...|
T Consensus 212 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~ 289 (420)
T 3vl1_A 212 TGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQL--PSKF 289 (420)
T ss_dssp TTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEE--CCTT
T ss_pred CCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEc--cccc
Confidence 9998888764 333 4444556889999999999999999999999888777 3468
Q ss_pred cccEEEEEEecCCC-EEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEc
Q 007229 235 HGSIYAVSWSPDGK-KVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSA 313 (612)
Q Consensus 235 ~~~v~~i~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 313 (612)
...|.+++|+|+++ +|++++.||.|++||+ .+++.
T Consensus 290 ~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~----~~~~~---------------------------------------- 325 (420)
T 3vl1_A 290 TCSCNSLTVDGNNANYIYAGYENGMLAQWDL----RSPEC---------------------------------------- 325 (420)
T ss_dssp SSCEEEEEECSSCTTEEEEEETTSEEEEEET----TCTTS----------------------------------------
T ss_pred CCCceeEEEeCCCCCEEEEEeCCCeEEEEEc----CCCcC----------------------------------------
Confidence 89999999999998 9999999999999999 44322
Q ss_pred CCCCCCceeecC-cccceeEEEEEecCCcEEEEEecCCcEEEEEcCCc
Q 007229 314 SNLDKAPLSFSG-HVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVG 360 (612)
Q Consensus 314 ~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~ 360 (612)
+...+.+ |...+..+.+.+ +.++++++.||.|++|++...
T Consensus 326 -----~~~~~~~~~~~~v~~~~~~~--~~~l~s~~~d~~v~iw~~~~~ 366 (420)
T 3vl1_A 326 -----PVGEFLINEGTPINNVYFAA--GALFVSSGFDTSIKLDIISDP 366 (420)
T ss_dssp -----CSEEEEESTTSCEEEEEEET--TEEEEEETTTEEEEEEEECCT
T ss_pred -----chhhhhccCCCCceEEEeCC--CCEEEEecCCccEEEEeccCC
Confidence 1122223 566777776655 789999999999999998764
No 46
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-42 Score=318.39 Aligned_cols=260 Identities=17% Similarity=0.217 Sum_probs=207.8
Q ss_pred CCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCce-eeeee-ee-cCCCeEEEEECCCCCEEEEEeCCC
Q 007229 48 KPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFV-LKNEF-KV-LSGRIDDLQWSPDGLRIVACGDGK 124 (612)
Q Consensus 48 ~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~-~~~~~-~~-~~~~i~~~~~s~~~~~l~~~~~~~ 124 (612)
+.++++.+.+|.+.|.+++|+|+ +||+|+.|++|++||+..+.. +...+ .. |...|.+++|+|++++|++++.++
T Consensus 3 ~~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~ 80 (330)
T 2hes_X 3 SINLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDS 80 (330)
T ss_dssp CCEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTS
T ss_pred ccccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCC
Confidence 45667889999999999999998 999999999999999987632 33344 33 999999999999999999999988
Q ss_pred CeeeEEEEEecC-------CceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCC----Ceeeecccccccce
Q 007229 125 GKSFVRAFMWDS-------GTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPP----FKFKLSHREHSNFV 193 (612)
Q Consensus 125 ~~~~i~i~~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~----~~~~~~~~~~~~~v 193 (612)
.+++|+.+. .+.+..+.+|...|.+++|+|+++ +|++|+.|++|++||+.. .+++..+.+|...|
T Consensus 81 ---~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~-~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v 156 (330)
T 2hes_X 81 ---TVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGY-YLATCSRDKSVWIWETDESGEEYECISVLQEHSQDV 156 (330)
T ss_dssp ---CEEEEEC-------CCCEEEEEEC----CEEEEEECTTSC-EEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCE
T ss_pred ---cEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCC-EEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCce
Confidence 567777642 356778899999999999999999 599999999999999943 35567788999999
Q ss_pred EEEEECCCCCeEEEEEcCCcEEEEecCCC--CeeeeeeccCCccccEEEEEEecC--CCEEEEEeCCCcEEEEEeecCCC
Q 007229 194 NCIRFSPDGSKLISVSSDRKGLIYDGKSG--EKIGEFSSEDGHHGSIYAVSWSPD--GKKVLTVSADKSAKVWEILEDGS 269 (612)
Q Consensus 194 ~~~~~s~~~~~l~~~~~dg~i~vwd~~~~--~~~~~~~~~~~~~~~v~~i~~~~~--~~~l~~~~~dg~i~iw~~~~~~~ 269 (612)
.+++|+|++++|++++.|++|++||..++ +++..+ .+|...|.+++|+|+ +.+|++++.|++|++|++.....
T Consensus 157 ~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~---~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~ 233 (330)
T 2hes_X 157 KHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVL---NGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDE 233 (330)
T ss_dssp EEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEE---CCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECT
T ss_pred EEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEc---cCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCc
Confidence 99999999999999999999999998876 455555 489999999999998 67899999999999999832111
Q ss_pred CCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeec-CcccceeEEEEEecCCcEEEEEec
Q 007229 270 GGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFS-GHVKNVSTLTALKISQQTILSSSY 348 (612)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~ 348 (612)
..... | .....+. .|...|.+++|++ +..+++++.
T Consensus 234 ~~~~~------------------------------------~------~~~~~~~~~h~~~v~~v~~s~--~~~l~s~~~ 269 (330)
T 2hes_X 234 DDQQE------------------------------------W------VCEAILPDVHKRQVYNVAWGF--NGLIASVGA 269 (330)
T ss_dssp TSCEE------------------------------------E------EEEEECCSCCSSCEEEEEECT--TSCEEEEET
T ss_pred cccce------------------------------------e------EEeeecccccccceEEEEEcC--CCEEEEEeC
Confidence 00000 0 0011222 3888999999985 568999999
Q ss_pred CCcEEEEEcCCc
Q 007229 349 DGAIIKWIRGVG 360 (612)
Q Consensus 349 dg~i~~wd~~~~ 360 (612)
||.|++||...+
T Consensus 270 dg~v~iw~~~~~ 281 (330)
T 2hes_X 270 DGVLAVYEEVDG 281 (330)
T ss_dssp TSCEEEEEEETT
T ss_pred CCEEEEEEcCCC
Confidence 999999987654
No 47
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=5.7e-42 Score=318.96 Aligned_cols=298 Identities=16% Similarity=0.233 Sum_probs=240.8
Q ss_pred CCCCCCCceeEEEE-----cc-CCCEEEEec-CCEEEEEeCCCC-------ceeeEeccCCCceEEEEECCCCCEEEEee
Q 007229 13 APSTERGRGILISG-----NP-KTDTILYCN-GRSVLIRYLDKP-------LHVEFYGEHGYPVTVARYSPNGEWIASAD 78 (612)
Q Consensus 13 ~~~~~~~~v~~~~~-----s~-d~~~l~~~~-~~~i~i~~~~~~-------~~~~~~~~h~~~v~~~~~s~d~~~las~~ 78 (612)
....|.+.|++++| +| |+++|++++ |+.|++||+.++ .....+.+|...|.+++|+|++++|++++
T Consensus 16 ~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s 95 (343)
T 2xzm_R 16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSS 95 (343)
T ss_dssp EEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEE
T ss_pred eeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEc
Confidence 34468899999999 77 999999998 899999999753 34567899999999999999999999999
Q ss_pred CcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeee---ccCCceEEEEEE
Q 007229 79 VSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDF---DGHSRRVLSCEF 155 (612)
Q Consensus 79 ~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~---~~~~~~v~~~~~ 155 (612)
.|++|++||+.+++ ....+.+|...|.+++|+|++++|++++.++ .+++|+... ...... .+|...|.+++|
T Consensus 96 ~D~~v~lwd~~~~~-~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~---~i~~wd~~~-~~~~~~~~~~~~~~~v~~~~~ 170 (343)
T 2xzm_R 96 WDKTLRLWDLRTGT-TYKRFVGHQSEVYSVAFSPDNRQILSAGAER---EIKLWNILG-ECKFSSAEKENHSDWVSCVRY 170 (343)
T ss_dssp TTSEEEEEETTSSC-EEEEEECCCSCEEEEEECSSTTEEEEEETTS---CEEEEESSS-CEEEECCTTTSCSSCEEEEEE
T ss_pred CCCcEEEEECCCCc-EEEEEcCCCCcEEEEEECCCCCEEEEEcCCC---EEEEEeccC-CceeeeecccCCCceeeeeee
Confidence 99999999999988 5567889999999999999999999999988 467776653 333333 379999999999
Q ss_pred cCCC----------CEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCC-CCe
Q 007229 156 KPTR----------PFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKS-GEK 224 (612)
Q Consensus 156 ~~~~----------~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~-~~~ 224 (612)
+|++ + ++++++.|+.|++|| ...+....+.+|...|.+++|+|++++|++++.|+.|++||+.. ...
T Consensus 171 ~~~~~~~~~~~~~~~-~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~ 248 (343)
T 2xzm_R 171 SPIMKSANKVQPFAP-YFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYP 248 (343)
T ss_dssp CCCCCSCSCCCSSCC-EEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSC
T ss_pred ccccccccccCCCCC-EEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCccc
Confidence 9987 5 599999999999999 45667778889999999999999999999999999999999944 444
Q ss_pred eeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEc
Q 007229 225 IGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSL 304 (612)
Q Consensus 225 ~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (612)
...+ .+...|.+++|+|+++++++ +.|+.+++|++ .+++.........
T Consensus 249 ~~~~----~~~~~v~~v~~sp~~~~la~-~~d~~v~iw~~----~~~~~~~~~~~~~----------------------- 296 (343)
T 2xzm_R 249 QREF----DAGSTINQIAFNPKLQWVAV-GTDQGVKIFNL----MTQSKAPVCTIEA----------------------- 296 (343)
T ss_dssp SEEE----ECSSCEEEEEECSSSCEEEE-EESSCEEEEES----SSCCSCSEEECCC-----------------------
T ss_pred ceee----cCCCcEEEEEECCCCCEEEE-ECCCCEEEEEe----CCCCCCceEEeec-----------------------
Confidence 4444 35567999999999987765 46788999999 5544332111110
Q ss_pred CCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCc
Q 007229 305 GGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVG 360 (612)
Q Consensus 305 ~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~ 360 (612)
..........+|...+.+++|++. ++.|++|+.||.|++|+++++
T Consensus 297 ----------~~~~~~~~~~~~~~~v~~~~~sp~-g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 297 ----------EPITKAEGQKGKNPQCTSLAWNAL-GKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp ----------CSGGGBTTBCCSCCCEEEEEECSS-SCCEEEEETTSEEEEEEEEEE
T ss_pred ----------CcchhhhhhcCCCCceEEEEECCC-CCeEEEecCCceEEEEEEEcc
Confidence 000011223468889999999832 789999999999999998654
No 48
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.6e-41 Score=312.25 Aligned_cols=285 Identities=17% Similarity=0.260 Sum_probs=249.1
Q ss_pred CCCCCceeEEEEccCCCEEEEec-CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCce
Q 007229 15 STERGRGILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFV 93 (612)
Q Consensus 15 ~~~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~ 93 (612)
..|.+.|.+++|+|+|++|++++ ++.|++|++.+++....+.+|...|.+++|+|++++|++++.|+.|++||+.+++
T Consensus 20 ~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~- 98 (312)
T 4ery_A 20 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK- 98 (312)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC-
T ss_pred cccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCc-
Confidence 46788999999999999999998 8999999999999999999999999999999999999999999999999999988
Q ss_pred eeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEE
Q 007229 94 LKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVN 173 (612)
Q Consensus 94 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~ 173 (612)
....+.+|...|.+++|+|++++|++++.++ .+++|+..+++.+..+..|..+|.+++|+|+++ ++++++.|+.|+
T Consensus 99 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~---~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~ 174 (312)
T 4ery_A 99 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE---SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCR 174 (312)
T ss_dssp EEEEEECCSSCEEEEEECSSSSEEEEEETTS---CEEEEETTTCCEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEE
T ss_pred EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCC---cEEEEECCCCEEEEEecCCCCcEEEEEEcCCCC-EEEEEeCCCcEE
Confidence 5567889999999999999999999999988 578888889999999999999999999999999 599999999999
Q ss_pred EEeCCCCeeeecc-cccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCcccc---EEEEEEecCCCE
Q 007229 174 FYEGPPFKFKLSH-REHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGS---IYAVSWSPDGKK 249 (612)
Q Consensus 174 ~wd~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~---v~~i~~~~~~~~ 249 (612)
+||+.+++.+..+ ..+..++.+++|+|++++|++++.|+.|++||+.+++.+..+. +|... +......+++++
T Consensus 175 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 251 (312)
T 4ery_A 175 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT---GHKNEKYCIFANFSVTGGKW 251 (312)
T ss_dssp EEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEC---SSCCSSSCCCEEEECSSSCE
T ss_pred EEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEE---ecCCceEEEEEEEEeCCCcE
Confidence 9999998877765 4566789999999999999999999999999999999888773 44433 222333467889
Q ss_pred EEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccc
Q 007229 250 VLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKN 329 (612)
Q Consensus 250 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 329 (612)
|++++.||.|++||+ .+++.+. .+.+|...
T Consensus 252 l~sg~~dg~i~vwd~----~~~~~~~----------------------------------------------~~~~h~~~ 281 (312)
T 4ery_A 252 IVSGSEDNLVYIWNL----QTKEIVQ----------------------------------------------KLQGHTDV 281 (312)
T ss_dssp EEECCTTSCEEEEET----TTCCEEE----------------------------------------------EECCCSSC
T ss_pred EEEECCCCEEEEEEC----CCchhhh----------------------------------------------hhhccCCc
Confidence 999999999999999 6555443 34568888
Q ss_pred eeEEEEEecCCcEEEEEe--cCCcEEEEEcC
Q 007229 330 VSTLTALKISQQTILSSS--YDGAIIKWIRG 358 (612)
Q Consensus 330 v~~~~~~~~~~~~l~~~~--~dg~i~~wd~~ 358 (612)
|.++++++. +..+++++ .|+.|++|+.+
T Consensus 282 v~~~~~~p~-~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 282 VISTACHPT-ENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp EEEEEECSS-SSEEEEEECTTTCCEEEEECC
T ss_pred EEEEeecCc-CCceEEEEccCCccEEEecCC
Confidence 999998842 67888876 69999999864
No 49
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-43 Score=340.89 Aligned_cols=349 Identities=9% Similarity=-0.005 Sum_probs=244.6
Q ss_pred cCCCeEEEEECCCC---------CEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCe
Q 007229 101 LSGRIDDLQWSPDG---------LRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFL 171 (612)
Q Consensus 101 ~~~~i~~~~~s~~~---------~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~ 171 (612)
+.+.|.+++|+|++ ++||+++.+... -..+|+++ ++++++.|++
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~--------------------------~~~~~~~~-~laS~s~D~t 184 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD--------------------------EPLNEHLE-MFDKEKHSSC 184 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC---------------------------------------------CEE
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccC--------------------------Cccchhhh-hhccCCCCce
Confidence 67899999999987 788887755310 01368888 6999999999
Q ss_pred EEEEeCCCCeee----ecccccccceEEEEECCC------CCeEEEEEcCCcEEEEecCCCCeee--------eeeccCC
Q 007229 172 VNFYEGPPFKFK----LSHREHSNFVNCIRFSPD------GSKLISVSSDRKGLIYDGKSGEKIG--------EFSSEDG 233 (612)
Q Consensus 172 i~~wd~~~~~~~----~~~~~~~~~v~~~~~s~~------~~~l~~~~~dg~i~vwd~~~~~~~~--------~~~~~~~ 233 (612)
|++||+.+++.. ..+.+|.+.|.+++|+|+ +.+||+++.||+|++||+.+++... ......+
T Consensus 185 I~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~ 264 (524)
T 2j04_B 185 IQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSL 264 (524)
T ss_dssp EEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECC
T ss_pred EEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEc
Confidence 999998877642 345677889999999997 5799999999999999998765320 0011247
Q ss_pred ccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEc
Q 007229 234 HHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSA 313 (612)
Q Consensus 234 ~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 313 (612)
|...|.+++|++++ .|++|+.||+|++||+ .++.
T Consensus 265 h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~----~~~~----------------------------------------- 298 (524)
T 2j04_B 265 ADSLITTFDFLSPT-TVVCGFKNGFVAEFDL----TDPE----------------------------------------- 298 (524)
T ss_dssp TTTCEEEEEESSSS-EEEEEETTSEEEEEET----TBCS-----------------------------------------
T ss_pred CCCCEEEEEecCCC-eEEEEeCCCEEEEEEC----CCCC-----------------------------------------
Confidence 88999999999864 7999999999999998 3221
Q ss_pred CCCCCCceeecCcccceeEEEEE-ecCC-cEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCe
Q 007229 314 SNLDKAPLSFSGHVKNVSTLTAL-KISQ-QTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNK 391 (612)
Q Consensus 314 ~~~~~~~~~~~~~~~~v~~~~~~-~~~~-~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~ 391 (612)
.+...+.+|...|.++++. ++++ .+|++++.|++|++||+++++.......|.
T Consensus 299 ----~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~--------------------- 353 (524)
T 2j04_B 299 ----VPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRF--------------------- 353 (524)
T ss_dssp ----SCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEEC---------------------
T ss_pred ----CceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccccccccc---------------------
Confidence 1223456799999999643 4445 799999999999999988765432211000
Q ss_pred EEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecC
Q 007229 392 VWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQN 471 (612)
Q Consensus 392 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d 471 (612)
....+.+++|+|+++.+++++.|
T Consensus 354 ---------------------------------------------------------~~~~v~~v~fsp~~~~l~s~~~d 376 (524)
T 2j04_B 354 ---------------------------------------------------------RGSNLVPVVYCPQIYSYIYSDGA 376 (524)
T ss_dssp ---------------------------------------------------------SCCSCCCEEEETTTTEEEEECSS
T ss_pred ---------------------------------------------------------ccCcccceEeCCCcCeEEEeCCC
Confidence 00136789999999999999999
Q ss_pred CeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccc-----cccceeEEEec
Q 007229 472 GKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLF-----HTARINCLAWS 546 (612)
Q Consensus 472 g~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-----~~~~i~~~~~s 546 (612)
++|++||++++.. ...+.+|.+.|++++|+|++++|++|+.|++|++||+..+.. ..... +...+.+++|+
T Consensus 377 ~tv~lwd~~~~~~--~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~--~~~~~~~~~~~~~~v~~v~~s 452 (524)
T 2j04_B 377 SSLRAVPSRAAFA--VHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRLL--HGIKNSSATQKSLRLWKWDYS 452 (524)
T ss_dssp SEEEEEETTCTTC--CEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSSTT--TCC------CCCCEEEECBCC
T ss_pred CcEEEEECccccc--ceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhhc--cccccCccceeeeEEEEeccC
Confidence 9999999998765 567889999999999999999999999999999999866422 11111 12257899999
Q ss_pred CCCcEEEEeecCcEEEEEEccCCCcceeeeecccccCeeeEEEe-cC---ceEEEccCCCeEEEEEeccC
Q 007229 547 PSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFM-DD---FNVVSSGEDACIRVWRLATE 612 (612)
Q Consensus 547 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~-~~---~~l~s~~~d~~i~~w~~~~~ 612 (612)
|+++.+.. . | .+++|+....+ .++..+.+|...|.+++|+ ++ ..+++|+.||.|+||++.-|
T Consensus 453 p~g~~~~~-~-~-~~~~~~~~~~g-~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~ 518 (524)
T 2j04_B 453 IKDDKYRI-D-S-SYEVYPLTVND-VSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSLE 518 (524)
T ss_dssp SSSCEEEE-C-C-CCCCCC--------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSCC
T ss_pred CCCCeEEc-c-C-CceecccccCC-cceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEcccc
Confidence 99985532 2 2 24445443224 6778899999999999999 54 37999999999999999754
No 50
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=5.7e-41 Score=313.59 Aligned_cols=313 Identities=19% Similarity=0.243 Sum_probs=251.2
Q ss_pred EEEEEeCC--CCceeeEeccCCCceEEEEECCC-CCEEEEeeCcCeEEEeecCCCce----eeeeeeecCCCeEEEEECC
Q 007229 40 SVLIRYLD--KPLHVEFYGEHGYPVTVARYSPN-GEWIASADVSGSVRIWGTHNGFV----LKNEFKVLSGRIDDLQWSP 112 (612)
Q Consensus 40 ~i~i~~~~--~~~~~~~~~~h~~~v~~~~~s~d-~~~las~~~d~~i~iwd~~~~~~----~~~~~~~~~~~i~~~~~s~ 112 (612)
.++++... +.++..+|+||.+.|++++|+|+ +++||||+.|++|+|||+.+.+. ....+.+|...|.+++|+|
T Consensus 17 ~~~~~~~~~~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~ 96 (340)
T 4aow_A 17 NLYFQSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISS 96 (340)
T ss_dssp ---------CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECT
T ss_pred cEEEEEccCCceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECC
Confidence 34444443 33455679999999999999997 68999999999999999987653 3456788999999999999
Q ss_pred CCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeee-eccccccc
Q 007229 113 DGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFK-LSHREHSN 191 (612)
Q Consensus 113 ~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~-~~~~~~~~ 191 (612)
++++|++++.++ .+.+|.............+...+..+.++++++ .+++++.|+.+++||....... ....+|..
T Consensus 97 dg~~l~s~~~d~---~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~ 172 (340)
T 4aow_A 97 DGQFALSGSWDG---TLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNR-QIVSGSRDKTIKLWNTLGVCKYTVQDESHSE 172 (340)
T ss_dssp TSSEEEEEETTS---EEEEEETTTTEEEEEEECCSSCEEEEEECTTSS-CEEEEETTSCEEEECTTSCEEEEECSSSCSS
T ss_pred CCCEEEEEcccc---cceEEeecccceeeeecCCCCceeEEEEeecCc-cceeecCCCeEEEEEeCCCceEEEEeccccC
Confidence 999999999998 577788888888888899999999999999999 5999999999999998766543 44678999
Q ss_pred ceEEEEECCCC--CeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCC
Q 007229 192 FVNCIRFSPDG--SKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGS 269 (612)
Q Consensus 192 ~v~~~~~s~~~--~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 269 (612)
.+..++|++++ .++++++.|+.|++||+++++....+ .+|..+|.+++|+|++++|++++.||.|++||+ .
T Consensus 173 ~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~---~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~----~ 245 (340)
T 4aow_A 173 WVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNH---IGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDL----N 245 (340)
T ss_dssp CEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEE---CCCSSCEEEEEECTTSSEEEEEETTCEEEEEET----T
T ss_pred cccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEe---cCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEe----c
Confidence 99999999865 47889999999999999999988887 489999999999999999999999999999999 6
Q ss_pred CCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecC
Q 007229 270 GGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYD 349 (612)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 349 (612)
+.+.+..+. +...+..+.+++ +..+++++.|
T Consensus 246 ~~~~~~~~~-----------------------------------------------~~~~v~~~~~~~--~~~~~~~~~d 276 (340)
T 4aow_A 246 EGKHLYTLD-----------------------------------------------GGDIINALCFSP--NRYWLCAATG 276 (340)
T ss_dssp TTEEEEEEE-----------------------------------------------CSSCEEEEEECS--SSSEEEEEET
T ss_pred cCceeeeec-----------------------------------------------CCceEEeeecCC--CCceeeccCC
Confidence 666655443 234677777876 5667788889
Q ss_pred CcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEE
Q 007229 350 GAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALV 429 (612)
Q Consensus 350 g~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (612)
+.|++||+++...........
T Consensus 277 ~~i~iwd~~~~~~~~~~~~~~----------------------------------------------------------- 297 (340)
T 4aow_A 277 PSIKIWDLEGKIIVDELKQEV----------------------------------------------------------- 297 (340)
T ss_dssp TEEEEEETTTTEEEEEECCC------------------------------------------------------------
T ss_pred CEEEEEECCCCeEEEeccccc-----------------------------------------------------------
Confidence 999999988765543322000
Q ss_pred EeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcc
Q 007229 430 STESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNT 483 (612)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~ 483 (612)
.......+...|++++|+||+++|++|+.||.|+|||+++|.
T Consensus 298 ------------~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 298 ------------ISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp ------------------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred ------------eeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 000011244579999999999999999999999999999875
No 51
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.7e-40 Score=323.98 Aligned_cols=346 Identities=18% Similarity=0.260 Sum_probs=271.8
Q ss_pred eeeeeccCCceE-EEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEE
Q 007229 139 TVGDFDGHSRRV-LSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIY 217 (612)
Q Consensus 139 ~~~~~~~~~~~v-~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw 217 (612)
....+.+|...+ .++.|+ ++ ++++|+.||.|++||+.+++.+..+.+|...|.+++|+|++ +|++++.||+|++|
T Consensus 113 ~~~~l~~h~~~v~~~~~~~--~~-~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vw 188 (464)
T 3v7d_B 113 QRTTLRGHMTSVITCLQFE--DN-YVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVW 188 (464)
T ss_dssp EEEEEECCSSSCEEEEEEE--TT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEE
T ss_pred ceEEEcCCCCCcEEEEEEC--CC-EEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEE
Confidence 456788998875 666664 44 69999999999999999999999999999999999999988 89999999999999
Q ss_pred ecCCCCeeeeeeccCCccccEEEEEEe--cCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeecc
Q 007229 218 DGKSGEKIGEFSSEDGHHGSIYAVSWS--PDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQ 295 (612)
Q Consensus 218 d~~~~~~~~~~~~~~~~~~~v~~i~~~--~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (612)
|+++++.+..+ .+|...|.+++|+ ++++++++++.||.|++||+ ...............
T Consensus 189 d~~~~~~~~~~---~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~----~~~~~~~~~~~~~~~------------ 249 (464)
T 3v7d_B 189 DIKKGCCTHVF---EGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL----PKESSVPDHGEEHDY------------ 249 (464)
T ss_dssp ETTTTEEEEEE---CCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEEC----CCCCCC------CCS------------
T ss_pred ECCCCcEEEEE---CCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeC----CCCcccccccccCCc------------
Confidence 99999988888 4799999999999 47899999999999999999 554433322211100
Q ss_pred CCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEE
Q 007229 296 NDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKC 375 (612)
Q Consensus 296 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~ 375 (612)
................+.+|...+.++... +..+++++.||.|++||+.+++......
T Consensus 250 -----------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~d~~i~vwd~~~~~~~~~~~-------- 307 (464)
T 3v7d_B 250 -----------PLVFHTPEENPYFVGVLRGHMASVRTVSGH---GNIVVSGSYDNTLIVWDVAQMKCLYILS-------- 307 (464)
T ss_dssp -----------SEEESCGGGCTTEEEEECCCSSCEEEEEEE---TTEEEEEETTSCEEEEETTTTEEEEEEC--------
T ss_pred -----------ceEeeccCCCeEEEEEccCccceEEEEcCC---CCEEEEEeCCCeEEEEECCCCcEEEEec--------
Confidence 000000011122234556677777766433 6788888888888888877654432211
Q ss_pred EEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEE
Q 007229 376 LAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTA 455 (612)
Q Consensus 376 ~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 455 (612)
.+...+.+
T Consensus 308 ------------------------------------------------------------------------~~~~~v~~ 315 (464)
T 3v7d_B 308 ------------------------------------------------------------------------GHTDRIYS 315 (464)
T ss_dssp ------------------------------------------------------------------------CCSSCEEE
T ss_pred ------------------------------------------------------------------------CCCCCEEE
Confidence 13446899
Q ss_pred EEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccc
Q 007229 456 CAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLF 535 (612)
Q Consensus 456 ~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 535 (612)
++|+|+++++++|+.||.|++||+.+++. ...+.+|...|.+++|+ +++|++++.||.|++||+.++..... . .
T Consensus 316 ~~~~~~~~~l~sg~~dg~i~vwd~~~~~~--~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~-~-~ 389 (464)
T 3v7d_B 316 TIYDHERKRCISASMDTTIRIWDLENGEL--MYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFS-Y-H 389 (464)
T ss_dssp EEEETTTTEEEEEETTSCEEEEETTTTEE--EEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEE-E-E
T ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCcE--EEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeee-e-c
Confidence 99999999999999999999999998876 67888999999999997 57999999999999999999876533 2 3
Q ss_pred cccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceee-eecccccCeeeEEEecCceEEEccCCCeEEEEEec
Q 007229 536 HTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRIT-IKNAHLGGVYGVAFMDDFNVVSSGEDACIRVWRLA 610 (612)
Q Consensus 536 ~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~w~~~ 610 (612)
|...+..++|+|++++|++++ |+.|++||+++ + +.+. .+..|...|.+++|+++..+++++.||.+.+|-++
T Consensus 390 ~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~-g-~~~~~~~~~~~~~v~~v~~~~~~l~~~~~~~g~~~i~~ld 462 (464)
T 3v7d_B 390 HTNLSAITTFYVSDNILVSGS-ENQFNIYNLRS-G-KLVHANILKDADQIWSVNFKGKTLVAAVEKDGQSFLEILD 462 (464)
T ss_dssp CTTCCCEEEEEECSSEEEEEE-TTEEEEEETTT-C-CEEESCTTTTCSEEEEEEEETTEEEEEEEETTEEEEEEEE
T ss_pred CCCCccEEEEEeCCCEEEEec-CCeEEEEECCC-C-cEEehhhccCCCcEEEEEecCCEEEEEEEeCCeEEEEEee
Confidence 677888999999999999998 89999999998 5 5554 47789999999999866667777788887777654
No 52
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.9e-40 Score=321.28 Aligned_cols=328 Identities=17% Similarity=0.262 Sum_probs=275.9
Q ss_pred CCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCee
Q 007229 48 KPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKS 127 (612)
Q Consensus 48 ~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~ 127 (612)
..+....+.+|.+.|.. +++++|++||+|+.||+|++||+.+++ ....+.+|...|.+++|+ +..|++++.++
T Consensus 107 ~~~~~~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~-~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg--- 179 (445)
T 2ovr_B 107 ELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGK-CLRTLVGHTGGVWSSQMR--DNIIISGSTDR--- 179 (445)
T ss_dssp CCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCC-EEEECCCCSSCEEEEEEE--TTEEEEEETTS---
T ss_pred CcceeEEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCc-EEEEEcCCCCCEEEEEec--CCEEEEEeCCC---
Confidence 34456678899987533 355678999999999999999999998 556788999999999997 56999999988
Q ss_pred eEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEE
Q 007229 128 FVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLIS 207 (612)
Q Consensus 128 ~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 207 (612)
.+++|++++++.+..+.+|...|.+++|+++ .+++|+.||.|++||+.+++.+..+.+|...|.+++| +++++++
T Consensus 180 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~---~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~ 254 (445)
T 2ovr_B 180 TLKVWNAETGECIHTLYGHTSTVRCMHLHEK---RVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVS 254 (445)
T ss_dssp CEEEEETTTTEEEEEECCCSSCEEEEEEETT---EEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEE
T ss_pred eEEEEECCcCcEEEEECCCCCcEEEEEecCC---EEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEE
Confidence 5788988899999999999999999999754 5999999999999999999999999999999999999 6889999
Q ss_pred EEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccce
Q 007229 208 VSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVED 287 (612)
Q Consensus 208 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (612)
++.||.|++||+++++.+..+ .+|...|.+++| +++++++++.||.|++||+ .+++.+..+
T Consensus 255 ~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~----~~~~~~~~~---------- 315 (445)
T 2ovr_B 255 GAYDFMVKVWDPETETCLHTL---QGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDV----ETGNCIHTL---------- 315 (445)
T ss_dssp EETTSCEEEEEGGGTEEEEEE---CCCSSCEEEEEE--CSSEEEEEETTSCEEEEET----TTCCEEEEE----------
T ss_pred EcCCCEEEEEECCCCcEeEEe---cCCCCceEEEEE--CCCEEEEEeCCCeEEEEEC----CCCCEEEEE----------
Confidence 999999999999999988888 378999999999 7899999999999999999 666554433
Q ss_pred eeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeece
Q 007229 288 MLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEK 367 (612)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~ 367 (612)
.+|...+.++.+. ++.+++++.||.|++||+.+++......
T Consensus 316 ------------------------------------~~~~~~v~~~~~~---~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 356 (445)
T 2ovr_B 316 ------------------------------------TGHQSLTSGMELK---DNILVSGNADSTVKIWDIKTGQCLQTLQ 356 (445)
T ss_dssp ------------------------------------CCCCSCEEEEEEE---TTEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred ------------------------------------cCCcccEEEEEEe---CCEEEEEeCCCeEEEEECCCCcEEEEEc
Confidence 3466667776664 6799999999999999987765433321
Q ss_pred ecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeee
Q 007229 368 KYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKI 447 (612)
Q Consensus 368 ~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (612)
.+ .
T Consensus 357 ~~-----------------------------------------------------------------------------~ 359 (445)
T 2ovr_B 357 GP-----------------------------------------------------------------------------N 359 (445)
T ss_dssp ST-----------------------------------------------------------------------------T
T ss_pred cC-----------------------------------------------------------------------------C
Confidence 00 0
Q ss_pred cccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceee-----ccccCceEEEEEcCCCcEEEEEcCCCe----E
Q 007229 448 DLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVL-----EKHRGAITVIQYSPDVSMFASADGNRE----A 518 (612)
Q Consensus 448 ~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~-----~~~~~~i~~~~~s~~~~~l~~~~~d~~----i 518 (612)
.+...|++++|+ ++++++|+.||.|++||+.+++. ...+ ..|.+.|.+++|+|++.++|+++.||+ +
T Consensus 360 ~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~--~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l 435 (445)
T 2ovr_B 360 KHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEF--IRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKL 435 (445)
T ss_dssp SCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCE--EEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEE
T ss_pred CCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCce--eeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEE
Confidence 123468888885 57999999999999999998876 3444 478899999999999999999999997 9
Q ss_pred EEEecCCc
Q 007229 519 IVWDRVSK 526 (612)
Q Consensus 519 ~iwd~~~~ 526 (612)
.+||+...
T Consensus 436 ~v~df~~~ 443 (445)
T 2ovr_B 436 LVLDFDVD 443 (445)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 99998754
No 53
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.8e-42 Score=330.67 Aligned_cols=372 Identities=12% Similarity=0.098 Sum_probs=275.0
Q ss_pred EEEccCCCEEEEecCCEEEEEeCCCCceeeEe-ccCCCceEEEEECC-CCCEEEEeeCcCeEEEeecCC---Cceee-ee
Q 007229 24 ISGNPKTDTILYCNGRSVLIRYLDKPLHVEFY-GEHGYPVTVARYSP-NGEWIASADVSGSVRIWGTHN---GFVLK-NE 97 (612)
Q Consensus 24 ~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~~-~~h~~~v~~~~~s~-d~~~las~~~d~~i~iwd~~~---~~~~~-~~ 97 (612)
..|+|+++.++.+. .|+ .+++.+..+ .+|.+.|++++|+| ++++||+|+.||+|+|||+.+ +.... ..
T Consensus 33 ~~f~~~~~~~~~~~-----~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~ 106 (437)
T 3gre_A 33 KEFGPIQEIVRSPN-----MGN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSL 106 (437)
T ss_dssp GGGCCCCCCCCCCC-----GGG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSE
T ss_pred hhcCCccccccccc-----ccc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceee
Confidence 34788888888765 487 446777777 89999999999999 999999999999999999987 43221 12
Q ss_pred eeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec---CCceeeeecc------------CCceEEEEE--EcCCCC
Q 007229 98 FKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD---SGTTVGDFDG------------HSRRVLSCE--FKPTRP 160 (612)
Q Consensus 98 ~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~---~~~~~~~~~~------------~~~~v~~~~--~~~~~~ 160 (612)
...|...|.+++|+|++++|++++.++ .+++|+.+ .++.+..+.+ +...+.++. ++|++.
T Consensus 107 ~~~h~~~v~~~~~~~~~~~l~s~s~dg---~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (437)
T 3gre_A 107 TYDCSSTVTQITMIPNFDAFAVSSKDG---QIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKS 183 (437)
T ss_dssp EEECSSCEEEEEECTTSSEEEEEETTS---EEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCE
T ss_pred eccCCCCEEEEEEeCCCCEEEEEeCCC---EEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCC
Confidence 226999999999999999999999998 67888874 5555544433 445555555 456777
Q ss_pred EEEEEeecCCeEEEEeCCCCeeeecccc--cccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccE
Q 007229 161 FRIATCGEDFLVNFYEGPPFKFKLSHRE--HSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSI 238 (612)
Q Consensus 161 ~~l~~~~~d~~i~~wd~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v 238 (612)
++++++.|+.|++||+++++.+..+.+ |...|.+++|+|++++|++++.||.|++||+++++.+..+. ..|..+|
T Consensus 184 -~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~~v 260 (437)
T 3gre_A 184 -LLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWS--FGDHAPI 260 (437)
T ss_dssp -EEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEB--CTTCEEE
T ss_pred -EEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEe--cCCCCce
Confidence 699999999999999999999999888 89999999999999999999999999999999998888762 2677799
Q ss_pred EEEEEec----CCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcC
Q 007229 239 YAVSWSP----DGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSAS 314 (612)
Q Consensus 239 ~~i~~~~----~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 314 (612)
.+++|+| ++++|++++.||.|++||+ .+++.+..+..+.... ....+...
T Consensus 261 ~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~----~~~~~~~~~~~~~~~~-----~~~~~~~~----------------- 314 (437)
T 3gre_A 261 THVEVCQFYGKNSVIVVGGSSKTFLTIWNF----VKGHCQYAFINSDEQP-----SMEHFLPI----------------- 314 (437)
T ss_dssp EEEEECTTTCTTEEEEEEESTTEEEEEEET----TTTEEEEEEESSSSCC-----CGGGGSCB-----------------
T ss_pred EEEEeccccCCCccEEEEEcCCCcEEEEEc----CCCcEEEEEEcCCCCC-----ccceeccc-----------------
Confidence 9996654 6889999999999999999 8888888877553211 11111100
Q ss_pred CCCCCceeecC--cccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeE
Q 007229 315 NLDKAPLSFSG--HVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKV 392 (612)
Q Consensus 315 ~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i 392 (612)
........+.+ |...|.++++++ +.++++++.||.|++||+.+++.......+...
T Consensus 315 ~~~l~~~~~~~~~~~~~v~~l~~~~--~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~-------------------- 372 (437)
T 3gre_A 315 EKGLEELNFCGIRSLNALSTISVSN--DKILLTDEATSSIVMFSLNELSSSKAVISPSRF-------------------- 372 (437)
T ss_dssp CSSGGGCCCCCCCSGGGGCCEEEET--TEEEEEEGGGTEEEEEETTCGGGCEEEECC--C--------------------
T ss_pred ccccccceecccccCCceEEEEECC--ceEEEecCCCCeEEEEECCCcccceEEeccccc--------------------
Confidence 00001112344 889999999994 789999999999999999887655443321110
Q ss_pred EEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCC
Q 007229 393 WRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNG 472 (612)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg 472 (612)
...+....++++..+++..
T Consensus 373 ---------------------------------------------------------~~~~~~~~~~~~~~~~~~~---- 391 (437)
T 3gre_A 373 ---------------------------------------------------------SDVFIPTQVTANLTMLLRK---- 391 (437)
T ss_dssp ---------------------------------------------------------CCEEEEEEEETTEEEEEEE----
T ss_pred ---------------------------------------------------------CceEEEEEeecceEEEEEe----
Confidence 1123445555555544443
Q ss_pred eEEEEEccCcccccceeeccccCceEEEEEcCC--CcEEEEEcCCCeEEEEe
Q 007229 473 KLHIYSISGNTLTEEMVLEKHRGAITVIQYSPD--VSMFASADGNREAIVWD 522 (612)
Q Consensus 473 ~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~--~~~l~~~~~d~~i~iwd 522 (612)
++...... ......|...|++++|+++ +.+|++++.||.|+||+
T Consensus 392 ----~~~~~~~~--~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 392 ----MKRTSTHS--VDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp ----CC---------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred ----cccccccc--cCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 22222222 2445679999999999998 88999999999999995
No 54
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.1e-43 Score=337.24 Aligned_cols=341 Identities=11% Similarity=0.093 Sum_probs=242.1
Q ss_pred CCceeEEEEccCC---------CEEEEecCCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeec
Q 007229 18 RGRGILISGNPKT---------DTILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGT 88 (612)
Q Consensus 18 ~~~v~~~~~s~d~---------~~l~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~ 88 (612)
.+.|.+++|+|++ ++||++..... . -..+|+++++|+++.|++|+|||+
T Consensus 133 ~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~-------~---------------~~~~~~~~~laS~s~D~tI~iWd~ 190 (524)
T 2j04_B 133 GGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYM-------D---------------EPLNEHLEMFDKEKHSSCIQIFKM 190 (524)
T ss_dssp CC--CCCSCEEECCCCSSCSSEEEEEEEEEC----------------------------------------CEEEEEEEE
T ss_pred CCceeEEEecccCCCCccCcCCeEEEEEEeccc-------C---------------CccchhhhhhccCCCCceEEEEEc
Confidence 5688999999987 78888872210 0 013799999999999999999999
Q ss_pred CCCcee---eeeeeecCCCeEEEEECCC------CCEEEEEeCCCCeeeEEEEEecCCc-----------eeeeeccCCc
Q 007229 89 HNGFVL---KNEFKVLSGRIDDLQWSPD------GLRIVACGDGKGKSFVRAFMWDSGT-----------TVGDFDGHSR 148 (612)
Q Consensus 89 ~~~~~~---~~~~~~~~~~i~~~~~s~~------~~~l~~~~~~~~~~~i~i~~~~~~~-----------~~~~~~~~~~ 148 (612)
.+++.. ...+.+|.+.|..++|+|+ +.+||+++.++ .+++|+.+.++ +...+.+|..
T Consensus 191 ~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~Dg---tvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~ 267 (524)
T 2j04_B 191 NTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEG---TINFLEIIDNATDVHVFKMCEKPSLTLSLADS 267 (524)
T ss_dssp ETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTS---CEEEEECCCCSSSSSEEECCCSCSEEECCTTT
T ss_pred cCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCC---eEEEEEcCCCccccccceeecCceEEEEcCCC
Confidence 887632 2346678899999999997 57999999998 57888887553 2346789999
Q ss_pred eEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCe-eeecccccccceEEE--EECCCC-CeEEEEEcCCcEEEEecCCCCe
Q 007229 149 RVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFK-FKLSHREHSNFVNCI--RFSPDG-SKLISVSSDRKGLIYDGKSGEK 224 (612)
Q Consensus 149 ~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~-~~~~~~~~~~~v~~~--~~s~~~-~~l~~~~~dg~i~vwd~~~~~~ 224 (612)
.|++++|+|++ .|++|+.||+|++||++++. ....+.+|...|.++ +|+|++ ++|++++.|++|++||+++++.
T Consensus 268 ~v~sv~~s~~~--~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~ 345 (524)
T 2j04_B 268 LITTFDFLSPT--TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIAT 345 (524)
T ss_dssp CEEEEEESSSS--EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHH
T ss_pred CEEEEEecCCC--eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCc
Confidence 99999999865 59999999999999999764 344578999999999 578888 8999999999999999998877
Q ss_pred eeeeeccCCcc--ccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEE
Q 007229 225 IGEFSSEDGHH--GSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITV 302 (612)
Q Consensus 225 ~~~~~~~~~~~--~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (612)
...+. +|. ..|.+++|+|+++.+++++.|++|++||+ ..+.++..+
T Consensus 346 ~~~~~---~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~----~~~~~~~~l------------------------- 393 (524)
T 2j04_B 346 TKTTV---SRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPS----RAAFAVHPL------------------------- 393 (524)
T ss_dssp HCEEE---EECSCCSCCCEEEETTTTEEEEECSSSEEEEEET----TCTTCCEEE-------------------------
T ss_pred ccccc---cccccCcccceEeCCCcCeEEEeCCCCcEEEEEC----cccccceee-------------------------
Confidence 66552 343 34789999999999999999999999998 332221111
Q ss_pred EcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccE
Q 007229 303 SLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEV 382 (612)
Q Consensus 303 ~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~ 382 (612)
.+
T Consensus 394 ---------------------~g--------------------------------------------------------- 395 (524)
T 2j04_B 394 ---------------------VS--------------------------------------------------------- 395 (524)
T ss_dssp ---------------------EE---------------------------------------------------------
T ss_pred ---------------------ec---------------------------------------------------------
Confidence 11
Q ss_pred EEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCC
Q 007229 383 IFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDG 462 (612)
Q Consensus 383 l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 462 (612)
|...|++++|+|++
T Consensus 396 ------------------------------------------------------------------H~~~V~sva~Sp~g 409 (524)
T 2j04_B 396 ------------------------------------------------------------------RETTITAIGVSRLH 409 (524)
T ss_dssp ------------------------------------------------------------------CSSCEEEEECCSSC
T ss_pred ------------------------------------------------------------------CCCceEEEEeCCCC
Confidence 12247788999999
Q ss_pred CeEEEEecCCeEEEEEccCcccccceeecc-----ccCceEEEEEcCCCcEEEEEcCCCeEEEEecC-Ccceeeeccccc
Q 007229 463 SEAIVGGQNGKLHIYSISGNTLTEEMVLEK-----HRGAITVIQYSPDVSMFASADGNREAIVWDRV-SKEVKLNNMLFH 536 (612)
Q Consensus 463 ~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~-----~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~~ 536 (612)
++|++|+.||+|++||+..+.+ ..... +...+.+++|+|+++.+.. .. ..++|+.. ++..+ ..+.+|
T Consensus 410 ~~l~Sgs~Dgtv~lwd~~~~~~---~~~~~~~~~~~~~~v~~v~~sp~g~~~~~-~~--~~~~~~~~~~g~~~-~~l~gh 482 (524)
T 2j04_B 410 PMVLAGSADGSLIITNAARRLL---HGIKNSSATQKSLRLWKWDYSIKDDKYRI-DS--SYEVYPLTVNDVSK-AKIDAH 482 (524)
T ss_dssp CBCEEEETTTEEECCBSCSSTT---TCC------CCCCEEEECBCCSSSCEEEE-CC--CCCCCC--------------C
T ss_pred CeEEEEECCCEEEEEechHhhc---cccccCccceeeeEEEEeccCCCCCeEEc-cC--CceecccccCCcce-eeecCC
Confidence 9999999999999999865422 21111 1225789999999985532 22 23444443 34443 567789
Q ss_pred ccceeEEEecCCCc---EEEEeecCcEEEEEEccC
Q 007229 537 TARINCLAWSPSST---MVATGSIDTCVIIYEIGK 568 (612)
Q Consensus 537 ~~~i~~~~~s~~~~---~l~s~~~d~~i~iwd~~~ 568 (612)
..+|.+++|+|++. +||+|+.||.|+||++..
T Consensus 483 ~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 483 GINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp CCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred CceEEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence 99999999999964 999999999999999986
No 55
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-40 Score=315.64 Aligned_cols=302 Identities=17% Similarity=0.220 Sum_probs=257.9
Q ss_pred eeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEe
Q 007229 139 TVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYD 218 (612)
Q Consensus 139 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd 218 (612)
....+.+|...|++++|+|+++ +|++++.||.|++||+.+++.+..+.+|...|.+++|+|++++|++++.||.|++||
T Consensus 24 ~~~~l~~h~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 102 (369)
T 3zwl_B 24 KAIKLTGHERPLTQVKYNKEGD-LLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWD 102 (369)
T ss_dssp EEEEEECCSSCEEEEEECTTSC-EEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEE
T ss_pred ccEEEEEeeceEEEEEEcCCCC-EEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence 4456889999999999999999 599999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCC-----CcEEEEEeecCCCCCeeEeeeeccCccccceeeeeee
Q 007229 219 GKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSAD-----KSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCL 293 (612)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (612)
+.+++.+..+ .+...+.+++|+|+++++++++.+ |.|++||+. .......+...
T Consensus 103 ~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~----~~~~~~~~~~~------------- 161 (369)
T 3zwl_B 103 VSNGQCVATW----KSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIE----RDSATHELTKV------------- 161 (369)
T ss_dssp TTTCCEEEEE----ECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEE----ECTTTCCEEEE-------------
T ss_pred CCCCcEEEEe----ecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEec----CCccceeeccc-------------
Confidence 9999999988 588899999999999999999998 999999982 21111000000
Q ss_pred ccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccce
Q 007229 294 WQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARI 373 (612)
Q Consensus 294 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i 373 (612)
.......+
T Consensus 162 -----------------------------------------------------~~~~~~~~------------------- 169 (369)
T 3zwl_B 162 -----------------------------------------------------SEEPIHKI------------------- 169 (369)
T ss_dssp -----------------------------------------------------CSSCSEEE-------------------
T ss_pred -----------------------------------------------------ccceeeec-------------------
Confidence 00000000
Q ss_pred EEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceE
Q 007229 374 KCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTV 453 (612)
Q Consensus 374 ~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 453 (612)
........+
T Consensus 170 -----------------------------------------------------------------------~~~~~~~~~ 178 (369)
T 3zwl_B 170 -----------------------------------------------------------------------ITHEGLDAA 178 (369)
T ss_dssp -----------------------------------------------------------------------ECCTTCCCE
T ss_pred -----------------------------------------------------------------------cCCcCccce
Confidence 000001258
Q ss_pred EEEEEccCCCeEEEEecCCeEEEEEccC-cccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeec
Q 007229 454 TACAIAPDGSEAIVGGQNGKLHIYSISG-NTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNN 532 (612)
Q Consensus 454 ~~~~~s~~~~~l~~~~~dg~v~i~d~~~-~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 532 (612)
.+++|+|++++|++++.||.|++||+.+ ... ...+..|...|.+++|+|++++|++++.|+.|++||+.+++.+. .
T Consensus 179 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~-~ 255 (369)
T 3zwl_B 179 TVAGWSTKGKYIIAGHKDGKISKYDVSNNYEY--VDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLK-K 255 (369)
T ss_dssp EEEEECGGGCEEEEEETTSEEEEEETTTTTEE--EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE-E
T ss_pred eEEEEcCCCCEEEEEcCCCEEEEEECCCCcEe--EEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceee-e
Confidence 8999999999999999999999999987 444 67788899999999999999999999999999999999988763 3
Q ss_pred ccccccceeEEEecCCCcEEEEeecCc--------------EEEEEEccCCCcceeeeecccccCeeeEEEe-cCceEEE
Q 007229 533 MLFHTARINCLAWSPSSTMVATGSIDT--------------CVIIYEIGKPASSRITIKNAHLGGVYGVAFM-DDFNVVS 597 (612)
Q Consensus 533 ~~~~~~~i~~~~~s~~~~~l~s~~~d~--------------~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s 597 (612)
+. +...+.+++|+|+++++++++.++ .+++||..+ + +.+..+.+|...|++++|+ ++++|++
T Consensus 256 ~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~-~-~~~~~~~~~~~~v~~~~~s~~~~~l~s 332 (369)
T 3zwl_B 256 YE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIF-E-EEIGRVQGHFGPLNTVAISPQGTSYAS 332 (369)
T ss_dssp EE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTT-C-CEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred ec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCC-C-cchhheecccCcEEEEEECCCCCEEEE
Confidence 44 788999999999999999999888 899999998 6 7888899999999999999 8999999
Q ss_pred ccCCCeEEEEEecc
Q 007229 598 SGEDACIRVWRLAT 611 (612)
Q Consensus 598 ~~~d~~i~~w~~~~ 611 (612)
++.||.|++|++++
T Consensus 333 ~~~dg~v~iw~~~~ 346 (369)
T 3zwl_B 333 GGEDGFIRLHHFEK 346 (369)
T ss_dssp EETTSEEEEEEECH
T ss_pred EcCCCeEEEEECcc
Confidence 99999999999974
No 56
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=100.00 E-value=2e-39 Score=345.82 Aligned_cols=525 Identities=12% Similarity=0.063 Sum_probs=375.1
Q ss_pred CCceeEEEEccCCCEEEEecCCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCc------CeEEEeecCCC
Q 007229 18 RGRGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVS------GSVRIWGTHNG 91 (612)
Q Consensus 18 ~~~v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d------~~i~iwd~~~~ 91 (612)
.+.+...+||| +.|++.+.+.|++|++.+++.. .+.+|...|.+++|||||++||+++.+ ..|.+||+.++
T Consensus 14 ~~~~~~~~~S~--~~iaf~~~~~l~~~~~~gg~~~-~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g 90 (1045)
T 1k32_A 14 PNLLLNPDIHG--DRIIFVCCDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENG 90 (1045)
T ss_dssp CCCCEEEEEET--TEEEEEETTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTT
T ss_pred cceEeCcEEeC--CEEEEEECCcEEEEECCCCcEE-EeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCC
Confidence 55788999996 5899999899999999988754 477899999999999999999988643 47999999987
Q ss_pred ceeeeeeeecCCCe-------EEEEECCCCCEEEEEeCCCCe-eeEEEEEec-CCceeeeeccCCceEEEEEEcCCCCEE
Q 007229 92 FVLKNEFKVLSGRI-------DDLQWSPDGLRIVACGDGKGK-SFVRAFMWD-SGTTVGDFDGHSRRVLSCEFKPTRPFR 162 (612)
Q Consensus 92 ~~~~~~~~~~~~~i-------~~~~~s~~~~~l~~~~~~~~~-~~i~i~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~ 162 (612)
+ ...+..|...+ ..++|+|||+.+++++.+... ....+|.|+ .+.....+..+. ...++|+| | +
T Consensus 91 ~--~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~--~~~~~~sp-G--~ 163 (1045)
T 1k32_A 91 E--IKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGP--ATHILFAD-G--R 163 (1045)
T ss_dssp E--EEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCS--CSEEEEET-T--E
T ss_pred C--eEEcccCCCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCC--cceeeeCC-C--E
Confidence 5 34677888888 999999999955555543100 023577766 233334444333 23567999 7 5
Q ss_pred EEEeec------------CCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCC-CCeeeeee
Q 007229 163 IATCGE------------DFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKS-GEKIGEFS 229 (612)
Q Consensus 163 l~~~~~------------d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~ 229 (612)
+++++. +...++|....+.....+.+|...+.++.|+++ .++++++.++.+.+|.+.. +.....+.
T Consensus 164 l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~ 242 (1045)
T 1k32_A 164 RVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHT 242 (1045)
T ss_dssp EEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECC
T ss_pred EEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEec
Confidence 777652 334566653332344456889999999999988 6667777889999998753 33444441
Q ss_pred ccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEE
Q 007229 230 SEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIIS 309 (612)
Q Consensus 230 ~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 309 (612)
.+. .+...+|+|||++++++ .++.|.+|++ ...+.. .+....
T Consensus 243 ---~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~----~~~~l~-~l~~~~---------------------------- 284 (1045)
T 1k32_A 243 ---SFT-DYYPRHLNTDGRRILFS-KGGSIYIFNP----DTEKIE-KIEIGD---------------------------- 284 (1045)
T ss_dssp ---CCC-SSCEEEEEESSSCEEEE-ETTEEEEECT----TTCCEE-ECCCCC----------------------------
T ss_pred ---CCC-CcceeeEcCCCCEEEEE-eCCEEEEecC----CceEee-eeccCc----------------------------
Confidence 333 45677999999999887 5889999997 333322 222110
Q ss_pred EEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceeccc-ceEEEEe-eccEEEEec
Q 007229 310 IFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDA-RIKCLAA-VEEVIFTAG 387 (612)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~-~i~~~~~-~~~~l~~~~ 387 (612)
.........|...+..++|++++++.+++++ ++.+.+|+...+....... +.. .+..+.+ +++.++.++
T Consensus 285 -------~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~sdg~~l~~~s 355 (1045)
T 1k32_A 285 -------LESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKVPE-PLRIRYVRRGGDTKVAFIHGT 355 (1045)
T ss_dssp -------CCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEECSC-CSCEEEEEECSSSEEEEEEEE
T ss_pred -------ccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEEccC-CCcceEEeeeEcCCCeEEEEE
Confidence 0001112246667889999823366677666 7899999998877665443 455 7777777 566788888
Q ss_pred CCCeEE-EEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEee--cccceeee-cccceEEEEEEccCCC
Q 007229 388 FDNKVW-RVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLD--SLKVMSKI-DLGFTVTACAIAPDGS 463 (612)
Q Consensus 388 ~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~i~~~~~s~~~~ 463 (612)
.+..++ +|+......... .........++++|++..++....+..+.+|+ +++..... .+...+.+++|||||+
T Consensus 356 ~~~~l~~~~d~~~~~~~~l--~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~ 433 (1045)
T 1k32_A 356 REGDFLGIYDYRTGKAEKF--EENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSR 433 (1045)
T ss_dssp TTEEEEEEEETTTCCEEEC--CCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSC
T ss_pred CCCceEEEEECCCCCceEe--cCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCC
Confidence 788888 999877653211 13345677899999998888877777899988 44444444 4667789999999999
Q ss_pred eEEEEecCC----------eEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcce-----
Q 007229 464 EAIVGGQNG----------KLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEV----- 528 (612)
Q Consensus 464 ~l~~~~~dg----------~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~----- 528 (612)
+|++++.++ .|++||+.+++. ..+..|...+..++|+|||++|++++.++...+|+......
T Consensus 434 ~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~---~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~ 510 (1045)
T 1k32_A 434 FIAYGFPLKHGETDGYVMQAIHVYDMEGRKI---FAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVV 510 (1045)
T ss_dssp EEEEEEEECSSTTCSCCEEEEEEEETTTTEE---EECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSC
T ss_pred eEEEEecCccccccCCCCCeEEEEECCCCcE---EEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccC
Confidence 999887754 899999998763 56677888899999999999999999877777775432211
Q ss_pred -------------------------------------eeecccccccceeEEEecCCCcEEEE-------------eecC
Q 007229 529 -------------------------------------KLNNMLFHTARINCLAWSPSSTMVAT-------------GSID 558 (612)
Q Consensus 529 -------------------------------------~~~~~~~~~~~i~~~~~s~~~~~l~s-------------~~~d 558 (612)
....+..|...+..++++|||+++++ ...+
T Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~ 590 (1045)
T 1k32_A 511 SKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEK 590 (1045)
T ss_dssp BEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCC
T ss_pred ceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCC
Confidence 01123336677889999999998875 1235
Q ss_pred cEEEEEEccCCCcceeeeecccccCeeeEEEe-cCceEEEccCCCeEEEEEeccC
Q 007229 559 TCVIIYEIGKPASSRITIKNAHLGGVYGVAFM-DDFNVVSSGEDACIRVWRLATE 612 (612)
Q Consensus 559 ~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~~~d~~i~~w~~~~~ 612 (612)
..+++||+.+ + + ...+. ..+.+++|+ |+++|++++.| .|++||++++
T Consensus 591 ~~l~~~d~~~-~-~-~~~l~---~~v~~~~~S~DG~~l~~~~~~-~i~~~d~~~~ 638 (1045)
T 1k32_A 591 GVLLKYDVKT-R-K-VTEVK---NNLTDLRLSADRKTVMVRKDD-GKIYTFPLEK 638 (1045)
T ss_dssp EEEEEEETTT-C-C-EEEEE---EEEEEEEECTTSCEEEEEETT-SCEEEEESSC
T ss_pred ceEEEEECCC-C-c-EEEee---cCcceEEECCCCCEEEEEcCC-cEEEEeCccC
Confidence 5788888887 3 2 23333 568899999 99999998877 7999999753
No 57
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=4.7e-40 Score=307.39 Aligned_cols=297 Identities=21% Similarity=0.330 Sum_probs=250.0
Q ss_pred CCCCCCceeEEEEccC-CCEEEEec-CCEEEEEeCCCCc-----eeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEe
Q 007229 14 PSTERGRGILISGNPK-TDTILYCN-GRSVLIRYLDKPL-----HVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIW 86 (612)
Q Consensus 14 ~~~~~~~v~~~~~s~d-~~~l~~~~-~~~i~i~~~~~~~-----~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iw 86 (612)
..+|++.|++++|+|+ +++|++++ |+.|+|||+.+++ +.+.+.+|...|.+++|+|||++|++++.|+.|++|
T Consensus 34 L~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~ 113 (340)
T 4aow_A 34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLW 113 (340)
T ss_dssp ECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred ECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEE
Confidence 3579999999999998 68999888 8999999997654 456788999999999999999999999999999999
Q ss_pred ecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCC-ceeeeeccCCceEEEEEEcCCCC-EEEE
Q 007229 87 GTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSG-TTVGDFDGHSRRVLSCEFKPTRP-FRIA 164 (612)
Q Consensus 87 d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~-~~l~ 164 (612)
+..... .......+...+....+++++++|++++.++ .+.+|+.... .....+.+|...+..++|++++. .+++
T Consensus 114 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~---~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 189 (340)
T 4aow_A 114 DLTTGT-TTRRFVGHTKDVLSVAFSSDNRQIVSGSRDK---TIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIV 189 (340)
T ss_dssp ETTTTE-EEEEEECCSSCEEEEEECTTSSCEEEEETTS---CEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEE
T ss_pred eecccc-eeeeecCCCCceeEEEEeecCccceeecCCC---eEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEE
Confidence 999887 4556777888999999999999999999988 3455555433 34455678999999999998753 2588
Q ss_pred EeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEe
Q 007229 165 TCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWS 244 (612)
Q Consensus 165 ~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~ 244 (612)
+++.|+.|++||+.+++.+..+.+|..+|.+++|+|++++|++++.|+.|++||+.+++.+..+ .+...+.+++|+
T Consensus 190 s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~----~~~~~v~~~~~~ 265 (340)
T 4aow_A 190 SCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTL----DGGDIINALCFS 265 (340)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEE----ECSSCEEEEEEC
T ss_pred EEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeee----cCCceEEeeecC
Confidence 9999999999999999999999999999999999999999999999999999999999998888 566789999999
Q ss_pred cCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeec
Q 007229 245 PDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFS 324 (612)
Q Consensus 245 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 324 (612)
|++. +++++.|+.|++||+ +.+..+..+.... ......
T Consensus 266 ~~~~-~~~~~~d~~i~iwd~----~~~~~~~~~~~~~-------------------------------------~~~~~~ 303 (340)
T 4aow_A 266 PNRY-WLCAATGPSIKIWDL----EGKIIVDELKQEV-------------------------------------ISTSSK 303 (340)
T ss_dssp SSSS-EEEEEETTEEEEEET----TTTEEEEEECCC--------------------------------------------
T ss_pred CCCc-eeeccCCCEEEEEEC----CCCeEEEeccccc-------------------------------------eeeecc
Confidence 9876 556668999999999 7777766554321 123345
Q ss_pred CcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCce
Q 007229 325 GHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGY 361 (612)
Q Consensus 325 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~ 361 (612)
+|...|++++|++ ++++|++|+.||.|++||+.++.
T Consensus 304 ~h~~~v~~l~~s~-dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 304 AEPPQCTSLAWSA-DGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp CCCCCEEEEEECT-TSSEEEEEETTSCEEEEEEEC--
T ss_pred CCCCCEEEEEECC-CCCEEEEEeCCCEEEEEeCCCcC
Confidence 7899999999983 27899999999999999998764
No 58
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=5.6e-41 Score=318.56 Aligned_cols=311 Identities=15% Similarity=0.171 Sum_probs=250.8
Q ss_pred EEeCCCCceeeEeccCCCceEEEEECCCC-CEEEEeeCcCeEEEeecCCCceeeeeee--ecCCCeEEEEECC-CCCEEE
Q 007229 43 IRYLDKPLHVEFYGEHGYPVTVARYSPNG-EWIASADVSGSVRIWGTHNGFVLKNEFK--VLSGRIDDLQWSP-DGLRIV 118 (612)
Q Consensus 43 i~~~~~~~~~~~~~~h~~~v~~~~~s~d~-~~las~~~d~~i~iwd~~~~~~~~~~~~--~~~~~i~~~~~s~-~~~~l~ 118 (612)
+|++.+.+....+.+|...|++++|+|++ ++||+|+.||.|+|||+.+++.. ..+. +|...|.+++|+| ++++|+
T Consensus 57 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~l~ 135 (383)
T 3ei3_B 57 IRSLKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKT-SFIQGMGPGDAITGMKFNQFNTNQLF 135 (383)
T ss_dssp HHHHTTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCE-EEECCCSTTCBEEEEEEETTEEEEEE
T ss_pred cccccccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccc-eeeecCCcCCceeEEEeCCCCCCEEE
Confidence 44556667778899999999999999999 99999999999999999988743 3333 6999999999999 789999
Q ss_pred EEeCCCCeeeEEEEEecCCceeeeecc---CCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEE
Q 007229 119 ACGDGKGKSFVRAFMWDSGTTVGDFDG---HSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNC 195 (612)
Q Consensus 119 ~~~~~~~~~~i~i~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~ 195 (612)
+++.++ .+++|+.+. ..+..+.. |...|.+++|+|+++ .+++++.|+.|++||+ +++.+..+.+|...|.+
T Consensus 136 s~~~d~---~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~ 209 (383)
T 3ei3_B 136 VSSIRG---ATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQ-MLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTH 209 (383)
T ss_dssp EEETTT---EEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTT-EEEEEETTSEEEEEET-TSCEEEEEECSSSCEEE
T ss_pred EEeCCC---EEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCC-EEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEE
Confidence 999888 567776664 55555544 448899999999999 5999999999999999 57788889999999999
Q ss_pred EEECCCCC-eEEEEEcCCcEEEEecCC----CCeeeeeeccCCccccEEEEEEec-CCCEEEEEeCCCcEEEEEeecCCC
Q 007229 196 IRFSPDGS-KLISVSSDRKGLIYDGKS----GEKIGEFSSEDGHHGSIYAVSWSP-DGKKVLTVSADKSAKVWEILEDGS 269 (612)
Q Consensus 196 ~~~s~~~~-~l~~~~~dg~i~vwd~~~----~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~dg~i~iw~~~~~~~ 269 (612)
++|+|+++ +|++++.|+.|++||+++ +..+..+ +|...|.+++|+| ++++|++++.|+.|++||+ .
T Consensus 210 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~----~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~----~ 281 (383)
T 3ei3_B 210 AEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM----PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSS----Y 281 (383)
T ss_dssp EEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE----ECSSCEEEEEECTTTSCEEEEEESSSEEEEEET----T
T ss_pred EEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe----cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEEC----C
Confidence 99999999 899999999999999998 5566666 7899999999999 9999999999999999999 5
Q ss_pred CCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecC
Q 007229 270 GGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYD 349 (612)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 349 (612)
+++....+..+. .....|...+. +.|+
T Consensus 282 ~~~~~~~~~~~~---------------------------------------~~~~~~~~~~~-~~~~------------- 308 (383)
T 3ei3_B 282 DWSKPDQIIIHP---------------------------------------HRQFQHLTPIK-ATWH------------- 308 (383)
T ss_dssp BTTSCSEEEECC---------------------------------------BCCCTTSCCCC-CEEC-------------
T ss_pred CCcccccccccc---------------------------------------ccccccccceE-Eecc-------------
Confidence 555443333221 00001111111 0111
Q ss_pred CcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEE
Q 007229 350 GAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALV 429 (612)
Q Consensus 350 g~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (612)
|
T Consensus 309 -----------------------------------------------------------------------p-------- 309 (383)
T 3ei3_B 309 -----------------------------------------------------------------------P-------- 309 (383)
T ss_dssp -----------------------------------------------------------------------S--------
T ss_pred -----------------------------------------------------------------------C--------
Confidence 1
Q ss_pred EeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeecc--ccCceEEEEEcCCCc
Q 007229 430 STESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEK--HRGAITVIQYSPDVS 507 (612)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~--~~~~i~~~~~s~~~~ 507 (612)
...+..++++|++++ +++.||.|++||+.+++. ...+.+ |...+..++|+|+++
T Consensus 310 --------------------~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~--~~~l~~~~~~~~~~~~~~s~~g~ 365 (383)
T 3ei3_B 310 --------------------MYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGL--VHQLRDPNAAGIISLNKFSPTGD 365 (383)
T ss_dssp --------------------SSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCE--EEEECBTTBCSCCCEEEECTTSS
T ss_pred --------------------CCCceEEEecCCccc--ccCCCCeEEEEecCCCce--eeeecCCCCCceEEEEEEecCcc
Confidence 123566889999998 899999999999998887 455554 667888889999999
Q ss_pred EEEEEcCCCeEEEEecCC
Q 007229 508 MFASADGNREAIVWDRVS 525 (612)
Q Consensus 508 ~l~~~~~d~~i~iwd~~~ 525 (612)
+|++++ |+.|++||+++
T Consensus 366 ~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 366 VLASGM-GFNILIWNRED 382 (383)
T ss_dssp EEEEEE-TTEEEEEECC-
T ss_pred EEEEec-CCcEEEEecCC
Confidence 999997 99999999875
No 59
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.6e-39 Score=317.13 Aligned_cols=324 Identities=16% Similarity=0.255 Sum_probs=263.3
Q ss_pred ceeeEeccCCCce-EEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeee
Q 007229 50 LHVEFYGEHGYPV-TVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSF 128 (612)
Q Consensus 50 ~~~~~~~~h~~~v-~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~ 128 (612)
.....+.+|...| .++.+ ++++|++|+.||+|++||+.+++ ....+.+|.+.|.+++|+|++ .|++++.++ .
T Consensus 112 ~~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~-~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg---~ 184 (464)
T 3v7d_B 112 PQRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKK-FLLQLSGHDGGVWALKYAHGG-ILVSGSTDR---T 184 (464)
T ss_dssp CEEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTE-EEEEECCCSSCEEEEEECSTT-EEEEEETTS---C
T ss_pred cceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCc-EEEEEeCCCcCEEEEEEcCCC-EEEEEeCCC---C
Confidence 3456788998885 66555 66799999999999999999998 556788999999999999998 899999888 5
Q ss_pred EEEEEecCCceeeeeccCCceEEEEEEcC--CCCEEEEEeecCCeEEEEeCCCCee-----------------------e
Q 007229 129 VRAFMWDSGTTVGDFDGHSRRVLSCEFKP--TRPFRIATCGEDFLVNFYEGPPFKF-----------------------K 183 (612)
Q Consensus 129 i~i~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~d~~i~~wd~~~~~~-----------------------~ 183 (612)
+++|+.++++.+..+.+|...|.+++|++ +++ .+++++.|+.|++||+.++.. .
T Consensus 185 i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~-~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (464)
T 3v7d_B 185 VRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIK-YIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFV 263 (464)
T ss_dssp EEEEETTTTEEEEEECCCSSCEEEEEEEESSSCE-EEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEE
T ss_pred EEEEECCCCcEEEEECCCCCccEEEEEecCCCCC-EEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEE
Confidence 78898889999999999999999999994 556 699999999999999987653 3
Q ss_pred ecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEE
Q 007229 184 LSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWE 263 (612)
Q Consensus 184 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~ 263 (612)
..+.+|...+.++ +++++++++++.|+.|++||+.+++.+..+ .+|...|.+++|+|+++++++++.||.|++||
T Consensus 264 ~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd 338 (464)
T 3v7d_B 264 GVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYIL---SGHTDRIYSTIYDHERKRCISASMDTTIRIWD 338 (464)
T ss_dssp EEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEE---CCCSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred EEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEe---cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Confidence 4567888888887 577999999999999999999999998888 47999999999999999999999999999999
Q ss_pred eecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEE
Q 007229 264 ILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTI 343 (612)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 343 (612)
+ .+++.+..+ .+|...
T Consensus 339 ~----~~~~~~~~~----------------------------------------------~~h~~~-------------- 354 (464)
T 3v7d_B 339 L----ENGELMYTL----------------------------------------------QGHTAL-------------- 354 (464)
T ss_dssp T----TTTEEEEEE----------------------------------------------CCCSSC--------------
T ss_pred C----CCCcEEEEE----------------------------------------------eCCCCc--------------
Confidence 9 555444322 123323
Q ss_pred EEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCC
Q 007229 344 LSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSS 423 (612)
Q Consensus 344 ~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (612)
T Consensus 355 -------------------------------------------------------------------------------- 354 (464)
T 3v7d_B 355 -------------------------------------------------------------------------------- 354 (464)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEc
Q 007229 424 PELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYS 503 (612)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s 503 (612)
+.+++++ +++|++++.||.|++||+.++.. .. ...|...+..++|+
T Consensus 355 -----------------------------v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~--~~-~~~~~~~~~~~~~~ 400 (464)
T 3v7d_B 355 -----------------------------VGLLRLS--DKFLVSAAADGSIRGWDANDYSR--KF-SYHHTNLSAITTFY 400 (464)
T ss_dssp -----------------------------EEEEEEC--SSEEEEEETTSEEEEEETTTCCE--EE-EEECTTCCCEEEEE
T ss_pred -----------------------------EEEEEEc--CCEEEEEeCCCcEEEEECCCCce--ee-eecCCCCccEEEEE
Confidence 4444554 35677777777777777766543 12 12356678889999
Q ss_pred CCCcEEEEEcCCCeEEEEecCCcceeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEc
Q 007229 504 PDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEI 566 (612)
Q Consensus 504 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~ 566 (612)
|+++++++++ ||.|++||+.+++.+......|...|.+++|+ +..++++++.|+.+.+|-+
T Consensus 401 ~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~l 461 (464)
T 3v7d_B 401 VSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLEIL 461 (464)
T ss_dssp ECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEEEE
T ss_pred eCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEEEe
Confidence 9999999998 89999999999999866677799999999997 4456667777887666544
No 60
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.4e-40 Score=315.10 Aligned_cols=316 Identities=15% Similarity=0.165 Sum_probs=255.1
Q ss_pred CCCceeEEEEccCCCEEEEec-CCEEEEEeCCCCc--eeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCce
Q 007229 17 ERGRGILISGNPKTDTILYCN-GRSVLIRYLDKPL--HVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFV 93 (612)
Q Consensus 17 ~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~--~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~ 93 (612)
+.+.|.+++|+||+++|++++ ++.|++||+++++ .+..+.+|...|++++|+|++++|++++.||.|++||+.+++.
T Consensus 7 ~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 86 (372)
T 1k8k_C 7 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW 86 (372)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEE
T ss_pred cCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCee
Confidence 677899999999999999996 8999999999987 7888999999999999999999999999999999999988863
Q ss_pred e-eeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCce----eeeeccCCceEEEEEEcCCCCEEEEEeec
Q 007229 94 L-KNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTT----VGDFDGHSRRVLSCEFKPTRPFRIATCGE 168 (612)
Q Consensus 94 ~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 168 (612)
. ...+..|...|.+++|+|++++|++++.++ .+.+|+++.++. ......|...|.+++|+|+++ ++++++.
T Consensus 87 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~ 162 (372)
T 1k8k_C 87 KPTLVILRINRAARCVRWAPNEKKFAVGSGSR---VISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSV-LLAAGSC 162 (372)
T ss_dssp EEEEECCCCSSCEEEEEECTTSSEEEEEETTS---SEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSS-EEEEEET
T ss_pred eeeEEeecCCCceeEEEECCCCCEEEEEeCCC---EEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCC-EEEEEcC
Confidence 2 223467899999999999999999999887 578888887662 333467899999999999999 5999999
Q ss_pred CCeEEEEeC------------------CCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeec
Q 007229 169 DFLVNFYEG------------------PPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSS 230 (612)
Q Consensus 169 d~~i~~wd~------------------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 230 (612)
|+.|++||+ ..++.+..+.+|...|.+++|+|++++|++++.|+.|++||+++++.+..+.
T Consensus 163 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~- 241 (372)
T 1k8k_C 163 DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLA- 241 (372)
T ss_dssp TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEE-
T ss_pred CCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEc-
Confidence 999999995 4678888888999999999999999999999999999999999999988883
Q ss_pred cCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCC--Ce--eEeeeeccCccccceeeeeeeccCCEEEEEEcCC
Q 007229 231 EDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSG--GR--VIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGG 306 (612)
Q Consensus 231 ~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (612)
.|..++.+++|+|++++++++ .|+.+++|++ .. +. .+..+...... ......
T Consensus 242 --~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~----~~~~~~~~~~~~~~~~~~~-----------------~~~~~~ 297 (372)
T 1k8k_C 242 --SETLPLLAVTFITESSLVAAG-HDCFPVLFTY----DSAAGKLSFGGRLDVPKQS-----------------SQRGLT 297 (372)
T ss_dssp --CSSCCEEEEEEEETTEEEEEE-TTSSCEEEEE----ETTTTEEEECCCCCCC-------------------------C
T ss_pred --cCCCCeEEEEEecCCCEEEEE-eCCeEEEEEc----cCcCceEEEeeccCccccc-----------------hhhhcc
Confidence 788899999999999988877 8999999999 44 32 22222111000 000011
Q ss_pred EEEEE---EcCCCCCC------ceeecCcccceeEEEEEecCC---cEEEEEecCCcEEEEEcCCcee
Q 007229 307 IISIF---SASNLDKA------PLSFSGHVKNVSTLTALKISQ---QTILSSSYDGAIIKWIRGVGYS 362 (612)
Q Consensus 307 ~i~~~---~~~~~~~~------~~~~~~~~~~v~~~~~~~~~~---~~l~~~~~dg~i~~wd~~~~~~ 362 (612)
.+.+| +... ... .....+|...|.++++.+.++ .+|++++.||.|++|++.+.+.
T Consensus 298 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~ 364 (372)
T 1k8k_C 298 ARERFQNLDKKA-SSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLES 364 (372)
T ss_dssp HHHHHHHCCCCC----------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHH
T ss_pred hhhhhhhccccc-ccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChhH
Confidence 12222 1000 000 122348999999999886556 8999999999999999876543
No 61
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=3.7e-41 Score=314.92 Aligned_cols=297 Identities=14% Similarity=0.105 Sum_probs=223.8
Q ss_pred CCceEEEEECCCCCEEEEeeCcC-------eEEEeecCCCcee---------eeeeeecCCCeEEEEECCCCCEEEEEeC
Q 007229 59 GYPVTVARYSPNGEWIASADVSG-------SVRIWGTHNGFVL---------KNEFKVLSGRIDDLQWSPDGLRIVACGD 122 (612)
Q Consensus 59 ~~~v~~~~~s~d~~~las~~~d~-------~i~iwd~~~~~~~---------~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 122 (612)
..+|.+++|+|||++||+|+.+. .|++|++...... ...+..|...+.++++ +++.++++..
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~--~~~~~~~g~~ 91 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDA--SKGIILVGCN 91 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEE--ETTEEEEECC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEe--CCCEEEEEEC
Confidence 46899999999999999987543 5999999865431 1123345555555544 3445555443
Q ss_pred CCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeee---------cccccccce
Q 007229 123 GKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKL---------SHREHSNFV 193 (612)
Q Consensus 123 ~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~---------~~~~~~~~v 193 (612)
++. . .+++++.|+.+++|++....... ....+...+
T Consensus 92 ~~~----------------------------------~-~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (365)
T 4h5i_A 92 ENS----------------------------------T-KITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYT 136 (365)
T ss_dssp CCH----------------------------------H-HHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCE
T ss_pred CCc----------------------------------c-EEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCE
Confidence 321 1 35666778888888865543211 122345668
Q ss_pred EEEEECCCCCeEEEEE--cCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCC
Q 007229 194 NCIRFSPDGSKLISVS--SDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGG 271 (612)
Q Consensus 194 ~~~~~s~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~ 271 (612)
.+++|||||++|++++ .|++|++||+++++.+..+ .|...|.+++|+|||+++++++.+ .+.+|+. .++
T Consensus 137 ~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~----~~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~----~~~ 207 (365)
T 4h5i_A 137 KLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEI----ETRGEVKDLHFSTDGKVVAYITGS-SLEVIST----VTG 207 (365)
T ss_dssp EEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEE----ECSSCCCEEEECTTSSEEEEECSS-CEEEEET----TTC
T ss_pred EEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEe----CCCCceEEEEEccCCceEEeccce-eEEEEEe----ccC
Confidence 9999999999987655 6899999999999999888 678889999999999999998754 5677766 333
Q ss_pred eeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCc
Q 007229 272 RVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGA 351 (612)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 351 (612)
+.+.... ..+
T Consensus 208 ~~~~~~~--------------------------------------------~~~-------------------------- 217 (365)
T 4h5i_A 208 SCIARKT--------------------------------------------DFD-------------------------- 217 (365)
T ss_dssp CEEEEEC--------------------------------------------CCC--------------------------
T ss_pred cceeeee--------------------------------------------cCC--------------------------
Confidence 2211100 000
Q ss_pred EEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEe
Q 007229 352 IIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVST 431 (612)
Q Consensus 352 i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (612)
T Consensus 218 -------------------------------------------------------------------------------- 217 (365)
T 4h5i_A 218 -------------------------------------------------------------------------------- 217 (365)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCC----eEEEEEccCccc--ccceeeccccCceEEEEEcCC
Q 007229 432 ESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNG----KLHIYSISGNTL--TEEMVLEKHRGAITVIQYSPD 505 (612)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg----~v~i~d~~~~~~--~~~~~~~~~~~~i~~~~~s~~ 505 (612)
+...+.+++|+|+++++++++.|+ .+++|++..... .....+.+|..+|++++|+||
T Consensus 218 -----------------~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spd 280 (365)
T 4h5i_A 218 -----------------KNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMK 280 (365)
T ss_dssp -----------------TTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTT
T ss_pred -----------------CCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCC
Confidence 122467788899999998888877 678888876543 223567789999999999999
Q ss_pred CcEEEEEcCCCeEEEEecCCcceeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEccC
Q 007229 506 VSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGK 568 (612)
Q Consensus 506 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~ 568 (612)
|++||+|+.|++|+|||+++++++...+.+|..+|++++|||||++||+|+.|++|+|||++.
T Consensus 281 g~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 281 GELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp SCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred CCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 999999999999999999999988666788999999999999999999999999999999976
No 62
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-42 Score=323.67 Aligned_cols=321 Identities=11% Similarity=0.099 Sum_probs=251.0
Q ss_pred cCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecC
Q 007229 57 EHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDS 136 (612)
Q Consensus 57 ~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~ 136 (612)
.-...|.+++|||||+++||++.|++|+ |...++ .+.+|...|.+++|+|+| .++ .|.+.+
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~----~l~gh~~~v~~V~FsPdg-------~~~------~~~~~~ 73 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK----DINCNSKNLFHVKEFPLE-------FEN------KLDFEL 73 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCS----CCSSBGGGTEEEEEECCC-------CCC------TTTTSC
T ss_pred HhhccEEEEEECCCCCEEEEEcCCceee--cccccc----eecCCCccEEEEEECCCC-------Ccc------eEEEEe
Confidence 4567899999999999999999999999 755554 446899999999999999 222 455554
Q ss_pred Cceeeeec-cCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeeccccccc-----ceEEEEECCCCCeEEEEEc
Q 007229 137 GTTVGDFD-GHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSN-----FVNCIRFSPDGSKLISVSS 210 (612)
Q Consensus 137 ~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~-----~v~~~~~s~~~~~l~~~~~ 210 (612)
++....+. .|...|.+++|+|+|. +||+++.||.|++||.+. ++..+. |.. .+.+++|||||++|++|+.
T Consensus 74 ~~~~~~~~~~~~~~V~~vawSPdG~-~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~ 149 (588)
T 2j04_A 74 AQQNGLLNSQPVCYPRVCKPSPIDD-WMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNE 149 (588)
T ss_dssp CCSSCSSTTSCSCCEEEEEECSSSS-CEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEET
T ss_pred CCCceEeecCCCCcEEEEEECCCCC-EEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcC
Confidence 44433443 5689999999999999 599999999999999655 555566 665 4999999999999999999
Q ss_pred CCcEEEEecCCCCe-------eeeeec-cCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCc
Q 007229 211 DRKGLIYDGKSGEK-------IGEFSS-EDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTS 282 (612)
Q Consensus 211 dg~i~vwd~~~~~~-------~~~~~~-~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 282 (612)
||+|++||+.++.. +..+.. ..+|...|.+++|+||| +++++.|+++++|++ ..+...
T Consensus 150 DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~----~~~~~~-------- 215 (588)
T 2j04_A 150 DGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTV----SASSHQ-------- 215 (588)
T ss_dssp TSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECC----CSSSSC--------
T ss_pred CCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEEC----CCCccc--------
Confidence 99999999998753 344311 13688899999999999 888899999999998 333311
Q ss_pred cccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceee-cCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCce
Q 007229 283 NAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSF-SGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGY 361 (612)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~ 361 (612)
.....+ .+|...|.+++|+ ++.+++++ ++.|++||+.+++
T Consensus 216 -----------------------------------~~~~tL~~~h~~~V~svaFs---g~~LASa~-~~tIkLWd~~~~~ 256 (588)
T 2j04_A 216 -----------------------------------PVSRMIQNASRRKITDLKIV---DYKVVLTC-PGYVHKIDLKNYS 256 (588)
T ss_dssp -----------------------------------CCEEEEECCCSSCCCCEEEE---TTEEEEEC-SSEEEEEETTTTE
T ss_pred -----------------------------------cceeeecccccCcEEEEEEE---CCEEEEEe-CCeEEEEECCCCe
Confidence 001223 3577899999998 57888887 6999999988766
Q ss_pred eeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecc
Q 007229 362 SSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSL 441 (612)
Q Consensus 362 ~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (612)
......
T Consensus 257 ~~~~~~-------------------------------------------------------------------------- 262 (588)
T 2j04_A 257 ISSLKT-------------------------------------------------------------------------- 262 (588)
T ss_dssp EEEEEC--------------------------------------------------------------------------
T ss_pred EEEEEc--------------------------------------------------------------------------
Confidence 532221
Q ss_pred cceeeecccceEEEEEE--ccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEE
Q 007229 442 KVMSKIDLGFTVTACAI--APDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAI 519 (612)
Q Consensus 442 ~~~~~~~~~~~i~~~~~--s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~ 519 (612)
.|...+..++| +||+..+++++++|+ ++|..+ .++|+||+..+++. |++++
T Consensus 263 ------gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d------------------~~~~spd~~l~a~~--d~~v~ 315 (588)
T 2j04_A 263 ------GSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED------------------ELHVTADNIIAPYL--EKKFK 315 (588)
T ss_dssp ------SCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS------------------SEEEECCCSSHHHH--HHHHH
T ss_pred ------CCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec------------------cEEECCCceEEEEc--CCEEE
Confidence 13345778899 999999999999999 999876 15689999888875 88999
Q ss_pred EEecCCcceeeecccccccceeEEEecCCCcEEEEeec
Q 007229 520 VWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSI 557 (612)
Q Consensus 520 iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~ 557 (612)
+|+...+.. ..+. +...|.+++|||||+.+|+++.
T Consensus 316 lW~~~g~~l--~~~~-~~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 316 KWSTIWNEF--NNYE-TTLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp HTTTTTTSS--SSSC-CEEEEEEEEECTTSSEEEEEEE
T ss_pred EEECCCCce--eeec-cceEEEEEEECCCCCEEEEEEe
Confidence 998866653 3444 3677999999999999998863
No 63
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.2e-39 Score=315.52 Aligned_cols=322 Identities=18% Similarity=0.268 Sum_probs=270.5
Q ss_pred eeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEE
Q 007229 94 LKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVN 173 (612)
Q Consensus 94 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~ 173 (612)
....+.+|.+.+.. ++++++++|++++.++ .+++|++.+++.+..+.+|...|.+++|+++ ++++|+.||.|+
T Consensus 110 ~~~~l~~h~~~v~~-~~~~~g~~l~sg~~dg---~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~---~l~s~~~dg~i~ 182 (445)
T 2ovr_B 110 SPKVLKGHDDHVIT-CLQFCGNRIVSGSDDN---TLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN---IIISGSTDRTLK 182 (445)
T ss_dssp CCEEEECSTTSCEE-EEEEETTEEEEEETTS---CEEEEETTTCCEEEECCCCSSCEEEEEEETT---EEEEEETTSCEE
T ss_pred eeEEecccCCCcEE-EEEEcCCEEEEEECCC---cEEEEECCCCcEEEEEcCCCCCEEEEEecCC---EEEEEeCCCeEE
Confidence 34567889887533 3556799999999988 5789998899999999999999999999843 699999999999
Q ss_pred EEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEE
Q 007229 174 FYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTV 253 (612)
Q Consensus 174 ~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~ 253 (612)
+||+.+++.+..+.+|...|.+++|+ ++++++++.||.|++||+.+++.+..+ .+|...+.+++| ++++++++
T Consensus 183 vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~---~~~~~~v~~~~~--~~~~l~~~ 255 (445)
T 2ovr_B 183 VWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVL---MGHVAAVRCVQY--DGRRVVSG 255 (445)
T ss_dssp EEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEE---ECCSSCEEEEEE--CSSCEEEE
T ss_pred EEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEE---cCCcccEEEEEE--CCCEEEEE
Confidence 99999999999999999999999996 668999999999999999999998887 389999999999 78899999
Q ss_pred eCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEE
Q 007229 254 SADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTL 333 (612)
Q Consensus 254 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~ 333 (612)
+.||.|++||+ .+++.+.. +.+|...+.++
T Consensus 256 ~~dg~i~iwd~----~~~~~~~~----------------------------------------------~~~~~~~v~~~ 285 (445)
T 2ovr_B 256 AYDFMVKVWDP----ETETCLHT----------------------------------------------LQGHTNRVYSL 285 (445)
T ss_dssp ETTSCEEEEEG----GGTEEEEE----------------------------------------------ECCCSSCEEEE
T ss_pred cCCCEEEEEEC----CCCcEeEE----------------------------------------------ecCCCCceEEE
Confidence 99999999999 65555433 34577788888
Q ss_pred EEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCC
Q 007229 334 TALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQ 413 (612)
Q Consensus 334 ~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 413 (612)
.+ + +..+++++.||.|++||+.+++.......|
T Consensus 286 ~~-~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-------------------------------------------- 318 (445)
T 2ovr_B 286 QF-D--GIHVVSGSLDTSIRVWDVETGNCIHTLTGH-------------------------------------------- 318 (445)
T ss_dssp EE-C--SSEEEEEETTSCEEEEETTTCCEEEEECCC--------------------------------------------
T ss_pred EE-C--CCEEEEEeCCCeEEEEECCCCCEEEEEcCC--------------------------------------------
Confidence 88 3 889999999999999999876654332211
Q ss_pred cceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeecc-
Q 007229 414 PLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEK- 492 (612)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~- 492 (612)
...+.++.+ +++++++|+.||.|++||+.+++. ...+..
T Consensus 319 ------------------------------------~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~--~~~~~~~ 358 (445)
T 2ovr_B 319 ------------------------------------QSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQC--LQTLQGP 358 (445)
T ss_dssp ------------------------------------CSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCE--EEEECST
T ss_pred ------------------------------------cccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcE--EEEEccC
Confidence 123444544 567899999999999999988776 455554
Q ss_pred --ccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecc----cccccceeEEEecCCCcEEEEeecCcE----EE
Q 007229 493 --HRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNM----LFHTARINCLAWSPSSTMVATGSIDTC----VI 562 (612)
Q Consensus 493 --~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~----~~~~~~i~~~~~s~~~~~l~s~~~d~~----i~ 562 (612)
|..+|++++|+ +++|++++.||.|++||+.+++.+.... .+|.+.|.+++|+|++.+||+|+.||+ +.
T Consensus 359 ~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~ 436 (445)
T 2ovr_B 359 NKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLL 436 (445)
T ss_dssp TSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEE
T ss_pred CCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEE
Confidence 88899999995 5799999999999999999998764331 468899999999999999999999997 99
Q ss_pred EEEccC
Q 007229 563 IYEIGK 568 (612)
Q Consensus 563 iwd~~~ 568 (612)
+||++.
T Consensus 437 v~df~~ 442 (445)
T 2ovr_B 437 VLDFDV 442 (445)
T ss_dssp EEECCC
T ss_pred EEECCC
Confidence 999986
No 64
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.6e-40 Score=317.67 Aligned_cols=300 Identities=17% Similarity=0.225 Sum_probs=248.4
Q ss_pred eeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCe------eeecccccccceEEEEECCC----C---CeEE
Q 007229 140 VGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFK------FKLSHREHSNFVNCIRFSPD----G---SKLI 206 (612)
Q Consensus 140 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~------~~~~~~~~~~~v~~~~~s~~----~---~~l~ 206 (612)
...+.+|...|++++|+| + +|++++.||.|++||+.+++ ....+.+|..+|.+++|+|+ + ++|+
T Consensus 9 ~~~~~~h~~~i~~~~~~~--~-~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~ 85 (397)
T 1sq9_A 9 ANAGKAHDADIFSVSACN--S-FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVA 85 (397)
T ss_dssp EEESSCSSSCEEEEEECS--S-EEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred hhhhhhhhcCeEEEEecC--C-eEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEE
Confidence 456789999999999999 4 69999999999999999887 67788899999999999999 9 9999
Q ss_pred EEEcCCcEEEEecCCCCe-----eeeeeccCCc-----cccEEEEEEe----cCCCE-EEEEeCCCcEEEEEeecCCCC-
Q 007229 207 SVSSDRKGLIYDGKSGEK-----IGEFSSEDGH-----HGSIYAVSWS----PDGKK-VLTVSADKSAKVWEILEDGSG- 270 (612)
Q Consensus 207 ~~~~dg~i~vwd~~~~~~-----~~~~~~~~~~-----~~~v~~i~~~----~~~~~-l~~~~~dg~i~iw~~~~~~~~- 270 (612)
+++.|+.|++||+.+++. ...+ ..| ...|.+++|+ |++++ |++++.||.|++||+ ..
T Consensus 86 s~~~dg~i~iw~~~~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~----~~~ 158 (397)
T 1sq9_A 86 TTSFSGDLLFYRITREDETKKVIFEKL---DLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKF----HPF 158 (397)
T ss_dssp EEETTSCEEEEEEEECTTTCCEEEEEE---CCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEE----ESS
T ss_pred EEcCCCCEEEEEccCCcccccccceee---cccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeC----Ccc
Confidence 999999999999998886 6666 356 5899999999 99999 999999999999999 32
Q ss_pred -----CeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEE
Q 007229 271 -----GRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILS 345 (612)
Q Consensus 271 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 345 (612)
++.+. +. ...-+.
T Consensus 159 ~~~~~~~~~~-----------------------------------------------------------~~---~~~~~~ 176 (397)
T 1sq9_A 159 ADESNSLTLN-----------------------------------------------------------WS---PTLELQ 176 (397)
T ss_dssp SSHHHHTTTC-----------------------------------------------------------CC---CEEEEE
T ss_pred ccccccceee-----------------------------------------------------------cc---Ccceee
Confidence 11000 00 000000
Q ss_pred EecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCc
Q 007229 346 SSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPE 425 (612)
Q Consensus 346 ~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (612)
+. +.
T Consensus 177 ~~----~~------------------------------------------------------------------------ 180 (397)
T 1sq9_A 177 GT----VE------------------------------------------------------------------------ 180 (397)
T ss_dssp EE----EC------------------------------------------------------------------------
T ss_pred ee----ec------------------------------------------------------------------------
Confidence 00 00
Q ss_pred EEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeecc---c---cCceEE
Q 007229 426 LALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEK---H---RGAITV 499 (612)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~---~---~~~i~~ 499 (612)
....+...+.+++|+|++ ++++++.||.|++||+.+++. ...+.. | ...|.+
T Consensus 181 -------------------~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~h~~~~~~i~~ 238 (397)
T 1sq9_A 181 -------------------SPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRP--LYNFESQHSMINNSNSIRS 238 (397)
T ss_dssp -------------------CSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEE--EEEEECCC---CCCCCEEE
T ss_pred -------------------cccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCce--eEEEeccccccccCCccce
Confidence 000123458899999999 999999999999999998776 566777 8 999999
Q ss_pred EEEcCCCcEEEEEcCC---CeEEEEecCCcceeeecccc-------------cccceeEEEecCCCcEEEEeecCcEEEE
Q 007229 500 IQYSPDVSMFASADGN---REAIVWDRVSKEVKLNNMLF-------------HTARINCLAWSPSSTMVATGSIDTCVII 563 (612)
Q Consensus 500 ~~~s~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~-------------~~~~i~~~~~s~~~~~l~s~~~d~~i~i 563 (612)
++|+|++++|++++.| +.|++||+.+++.+ ..+.+ |...|.+++|+|++++|++++.|+.|++
T Consensus 239 i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 317 (397)
T 1sq9_A 239 VKFSPQGSLLAIAHDSNSFGCITLYETEFGERI-GSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRF 317 (397)
T ss_dssp EEECSSTTEEEEEEEETTEEEEEEEETTTCCEE-EEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEE
T ss_pred EEECCCCCEEEEEecCCCCceEEEEECCCCccc-ceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEE
Confidence 9999999999999999 99999999998876 45666 8999999999999999999999999999
Q ss_pred EEccCCCcceeeeec------cc---------------ccCeeeEEEe-cC----------ceEEEccCCCeEEEEEecc
Q 007229 564 YEIGKPASSRITIKN------AH---------------LGGVYGVAFM-DD----------FNVVSSGEDACIRVWRLAT 611 (612)
Q Consensus 564 wd~~~~~~~~~~~~~------~h---------------~~~v~~~~~~-~~----------~~l~s~~~d~~i~~w~~~~ 611 (612)
||+.+ + +++..+. +| ...|.+++|+ ++ .+|++++.||.|++|++++
T Consensus 318 wd~~~-~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 395 (397)
T 1sq9_A 318 WDVKT-K-ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAG 395 (397)
T ss_dssp EETTT-T-EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC
T ss_pred EEcCC-C-ceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCC
Confidence 99998 6 7777787 77 9999999999 66 6999999999999999987
Q ss_pred C
Q 007229 612 E 612 (612)
Q Consensus 612 ~ 612 (612)
+
T Consensus 396 g 396 (397)
T 1sq9_A 396 G 396 (397)
T ss_dssp -
T ss_pred C
Confidence 4
No 65
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=3.9e-40 Score=336.85 Aligned_cols=292 Identities=20% Similarity=0.310 Sum_probs=240.7
Q ss_pred eeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCC-----eeeecccccccceEEEEECCCCCeEEEEEcCCcE
Q 007229 140 VGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPF-----KFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKG 214 (612)
Q Consensus 140 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~-----~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 214 (612)
...+.+|.+.|++++|+|++..+|++|+.|++|++||+.+. .....+.+|...|.+++|+|++++|++++.|++|
T Consensus 375 ~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v 454 (694)
T 3dm0_A 375 KGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGEL 454 (694)
T ss_dssp EEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred hhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcE
Confidence 34688999999999999987557999999999999998763 3455688999999999999999999999999999
Q ss_pred EEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeec
Q 007229 215 LIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLW 294 (612)
Q Consensus 215 ~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (612)
++||+.+++....+ .+|...|.+++|+|++++|++++.|++|++||. ...... .+..
T Consensus 455 ~vwd~~~~~~~~~~---~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~----~~~~~~-~~~~--------------- 511 (694)
T 3dm0_A 455 RLWDLAAGVSTRRF---VGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNT----LGECKY-TISE--------------- 511 (694)
T ss_dssp EEEETTTTEEEEEE---ECCSSCEEEEEECTTSSCEEEEETTSCEEEECT----TSCEEE-EECS---------------
T ss_pred EEEECCCCcceeEE---eCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEC----CCCcce-eecc---------------
Confidence 99999999988887 389999999999999999999999999999997 211100 0000
Q ss_pred cCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceE
Q 007229 295 QNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIK 374 (612)
Q Consensus 295 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~ 374 (612)
...+
T Consensus 512 ---------------------------~~~~------------------------------------------------- 515 (694)
T 3dm0_A 512 ---------------------------GGEG------------------------------------------------- 515 (694)
T ss_dssp ---------------------------STTS-------------------------------------------------
T ss_pred ---------------------------CCCC-------------------------------------------------
Confidence 0000
Q ss_pred EEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEE
Q 007229 375 CLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVT 454 (612)
Q Consensus 375 ~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 454 (612)
|...|.
T Consensus 516 --------------------------------------------------------------------------h~~~v~ 521 (694)
T 3dm0_A 516 --------------------------------------------------------------------------HRDWVS 521 (694)
T ss_dssp --------------------------------------------------------------------------CSSCEE
T ss_pred --------------------------------------------------------------------------CCCcEE
Confidence 122477
Q ss_pred EEEEccCC--CeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeec
Q 007229 455 ACAIAPDG--SEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNN 532 (612)
Q Consensus 455 ~~~~s~~~--~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 532 (612)
+++|+|++ ..+++++.|+.|++||+.+++. ...+.+|.+.|++++|+|++++|++++.||.|++||+.+++.+. .
T Consensus 522 ~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~--~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~-~ 598 (694)
T 3dm0_A 522 CVRFSPNTLQPTIVSASWDKTVKVWNLSNCKL--RSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLY-S 598 (694)
T ss_dssp EEEECSCSSSCEEEEEETTSCEEEEETTTCCE--EEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEE-C
T ss_pred EEEEeCCCCcceEEEEeCCCeEEEEECCCCcE--EEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEE-E
Confidence 88888876 5799999999999999988776 67788999999999999999999999999999999999998864 3
Q ss_pred ccccccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeecccc-------------------cCeeeEEEe-cC
Q 007229 533 MLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHL-------------------GGVYGVAFM-DD 592 (612)
Q Consensus 533 ~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~-------------------~~v~~~~~~-~~ 592 (612)
+. +...|.+++|+|++.+|++++ |+.|++||+++ + ..+..+..+. ..+++++|+ ++
T Consensus 599 ~~-~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg 674 (694)
T 3dm0_A 599 LE-ANSVIHALCFSPNRYWLCAAT-EHGIKIWDLES-K-SIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADG 674 (694)
T ss_dssp CB-CSSCEEEEEECSSSSEEEEEE-TTEEEEEETTT-T-EEEEEECCCCC----------------CCCCEEEEEECTTS
T ss_pred ec-CCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCC-C-CChhhhccccccccccccccccccCCceeEEeeeEEEcCCC
Confidence 44 456899999999998887765 55699999998 4 4554443221 237889999 99
Q ss_pred ceEEEccCCCeEEEEEecc
Q 007229 593 FNVVSSGEDACIRVWRLAT 611 (612)
Q Consensus 593 ~~l~s~~~d~~i~~w~~~~ 611 (612)
++|++++.||.|++|++..
T Consensus 675 ~~l~sgs~Dg~i~iW~i~~ 693 (694)
T 3dm0_A 675 STLFSGYTDGVIRVWGIGR 693 (694)
T ss_dssp SEEEEEETTSEEEEEEC--
T ss_pred CEEEEEcCCCeEEEEeccC
Confidence 9999999999999999864
No 66
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=4.4e-40 Score=311.78 Aligned_cols=294 Identities=16% Similarity=0.201 Sum_probs=239.8
Q ss_pred eccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCe--eeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecC
Q 007229 143 FDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFK--FKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGK 220 (612)
Q Consensus 143 ~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~ 220 (612)
+..|..+|.+++|+|+++ ++++++.|+.|++||+.+++ .+..+.+|...|.+++|+|++++|++++.||.|++||++
T Consensus 4 ~~~~~~~i~~~~~s~~~~-~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 82 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRT-QIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLK 82 (372)
T ss_dssp EESCSSCCCEEEECTTSS-EEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEE
T ss_pred ecccCCCeEEEEECCCCC-EEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECC
Confidence 455899999999999999 59999999999999999987 788899999999999999999999999999999999999
Q ss_pred CCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEE
Q 007229 221 SGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLI 300 (612)
Q Consensus 221 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (612)
+++....+.. ..|...|.+++|+|++++|++++.||.+++||+ ..........
T Consensus 83 ~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~----~~~~~~~~~~---------------------- 135 (372)
T 1k8k_C 83 GRTWKPTLVI-LRINRAARCVRWAPNEKKFAVGSGSRVISICYF----EQENDWWVCK---------------------- 135 (372)
T ss_dssp TTEEEEEEEC-CCCSSCEEEEEECTTSSEEEEEETTSSEEEEEE----ETTTTEEEEE----------------------
T ss_pred CCeeeeeEEe-ecCCCceeEEEECCCCCEEEEEeCCCEEEEEEe----cCCCcceeee----------------------
Confidence 8875554432 378899999999999999999999999999998 2221100000
Q ss_pred EEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeec
Q 007229 301 TVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVE 380 (612)
Q Consensus 301 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~ 380 (612)
....+|
T Consensus 136 --------------------~~~~~~------------------------------------------------------ 141 (372)
T 1k8k_C 136 --------------------HIKKPI------------------------------------------------------ 141 (372)
T ss_dssp --------------------EECTTC------------------------------------------------------
T ss_pred --------------------eeeccc------------------------------------------------------
Confidence 000011
Q ss_pred cEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEcc
Q 007229 381 EVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAP 460 (612)
Q Consensus 381 ~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 460 (612)
...+.+++|+|
T Consensus 142 ---------------------------------------------------------------------~~~i~~~~~~~ 152 (372)
T 1k8k_C 142 ---------------------------------------------------------------------RSTVLSLDWHP 152 (372)
T ss_dssp ---------------------------------------------------------------------CSCEEEEEECT
T ss_pred ---------------------------------------------------------------------CCCeeEEEEcC
Confidence 22467777888
Q ss_pred CCCeEEEEecCCeEEEEEcc------------------CcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEe
Q 007229 461 DGSEAIVGGQNGKLHIYSIS------------------GNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWD 522 (612)
Q Consensus 461 ~~~~l~~~~~dg~v~i~d~~------------------~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd 522 (612)
++++|++++.||.|++||+. .++. ...+..|...|.+++|+|++++|++++.|+.|++||
T Consensus 153 ~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d 230 (372)
T 1k8k_C 153 NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGEL--MFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLAD 230 (372)
T ss_dssp TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCE--EEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhh--eEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence 88888888888888888853 3333 566778999999999999999999999999999999
Q ss_pred cCCcceeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEccC--CCc-----------------------------
Q 007229 523 RVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGK--PAS----------------------------- 571 (612)
Q Consensus 523 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~--~~~----------------------------- 571 (612)
+.+++.+ ..+..|..+|.+++|+|++++|+++ .|+.|++|++.. +..
T Consensus 231 ~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (372)
T 1k8k_C 231 ADKKMAV-ATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKK 308 (372)
T ss_dssp GGGTTEE-EEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCC
T ss_pred CCCCcee-EEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccc
Confidence 9999876 5567799999999999999988888 899999999987 210
Q ss_pred -ce-------eeeecccccCeeeEEEe--cC---ceEEEccCCCeEEEEEecc
Q 007229 572 -SR-------ITIKNAHLGGVYGVAFM--DD---FNVVSSGEDACIRVWRLAT 611 (612)
Q Consensus 572 -~~-------~~~~~~h~~~v~~~~~~--~~---~~l~s~~~d~~i~~w~~~~ 611 (612)
.. .....+|...|++++|. ++ .+|++++.||.|++|++++
T Consensus 309 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~ 361 (372)
T 1k8k_C 309 ASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 361 (372)
T ss_dssp C---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred cccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecC
Confidence 00 12225899999999977 44 8999999999999999864
No 67
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=9.2e-40 Score=307.77 Aligned_cols=298 Identities=17% Similarity=0.224 Sum_probs=240.1
Q ss_pred eeeccCCceEEEEEEcCCCCEEEEEeec---CCeEEEEeCCCCeeeec-ccccccceEEEEECCC---CCeEEEEEcCCc
Q 007229 141 GDFDGHSRRVLSCEFKPTRPFRIATCGE---DFLVNFYEGPPFKFKLS-HREHSNFVNCIRFSPD---GSKLISVSSDRK 213 (612)
Q Consensus 141 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~---d~~i~~wd~~~~~~~~~-~~~~~~~v~~~~~s~~---~~~l~~~~~dg~ 213 (612)
..+.+|...|.+++|+|+++.++++++. |+.|++||+.+++.... ..+|..+|.+++|+|+ +++|++++.||.
T Consensus 12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~ 91 (357)
T 3i2n_A 12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGN 91 (357)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSC
T ss_pred hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCe
Confidence 3457799999999999999877778877 99999999998876654 3379999999999998 699999999999
Q ss_pred EEEEecCCCC-eeeeeeccCCccccEEEEEE------ecCCCEEEEEeCCCcEEEEEeecCCCCCe-eEeeeeccCcccc
Q 007229 214 GLIYDGKSGE-KIGEFSSEDGHHGSIYAVSW------SPDGKKVLTVSADKSAKVWEILEDGSGGR-VIKTFASSTSNAV 285 (612)
Q Consensus 214 i~vwd~~~~~-~~~~~~~~~~~~~~v~~i~~------~~~~~~l~~~~~dg~i~iw~~~~~~~~~~-~~~~~~~~~~~~~ 285 (612)
|++||+.+++ .+..+ .+|...|.+++| +|++++|++++.||.|++||+ ..++ .+..+....
T Consensus 92 i~iwd~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~----~~~~~~~~~~~~~~---- 160 (357)
T 3i2n_A 92 LHIWNLEAPEMPVYSV---KGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDP----RQKDDPVANMEPVQ---- 160 (357)
T ss_dssp EEEECTTSCSSCSEEE---CCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECT----TSCSSCSEEECCCT----
T ss_pred EEEEeCCCCCccEEEE---EecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeC----CCCCCcceeccccC----
Confidence 9999999988 66666 489999999955 678999999999999999999 5443 333322211
Q ss_pred ceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEE---ecCCcEEEEEecCCcEEEEEcCCcee
Q 007229 286 EDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTAL---KISQQTILSSSYDGAIIKWIRGVGYS 362 (612)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~l~~~~~dg~i~~wd~~~~~~ 362 (612)
..+...+.++.+. .+++.++++++.||.|++||+++++.
T Consensus 161 --------------------------------------~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~ 202 (357)
T 3i2n_A 161 --------------------------------------GENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMAL 202 (357)
T ss_dssp --------------------------------------TSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEE
T ss_pred --------------------------------------CCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCce
Confidence 0123367777753 24588999999999999999887654
Q ss_pred eeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeeccc
Q 007229 363 SKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLK 442 (612)
Q Consensus 363 ~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (612)
...
T Consensus 203 ~~~----------------------------------------------------------------------------- 205 (357)
T 3i2n_A 203 RWE----------------------------------------------------------------------------- 205 (357)
T ss_dssp EEE-----------------------------------------------------------------------------
T ss_pred eee-----------------------------------------------------------------------------
Confidence 221
Q ss_pred ceeeecccceEEEEEEcc---CCCeEEEEecCCeEEEEEccCcccccce---eeccccCceEEEEEcCCCc-EEEEEcCC
Q 007229 443 VMSKIDLGFTVTACAIAP---DGSEAIVGGQNGKLHIYSISGNTLTEEM---VLEKHRGAITVIQYSPDVS-MFASADGN 515 (612)
Q Consensus 443 ~~~~~~~~~~i~~~~~s~---~~~~l~~~~~dg~v~i~d~~~~~~~~~~---~~~~~~~~i~~~~~s~~~~-~l~~~~~d 515 (612)
..+...+.+++|+| +++++++++.||.|++||+.+++..... .+.+|...|++++|+|+++ +|++++.|
T Consensus 206 ----~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 281 (357)
T 3i2n_A 206 ----TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGA 281 (357)
T ss_dssp ----EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETT
T ss_pred ----cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCC
Confidence 11334689999999 9999999999999999999887652221 2338999999999999998 89999999
Q ss_pred CeEEEEecCCcce------------------eeecccccccceeEEEecCCCcEEE-EeecCcEEEEEEccC
Q 007229 516 REAIVWDRVSKEV------------------KLNNMLFHTARINCLAWSPSSTMVA-TGSIDTCVIIYEIGK 568 (612)
Q Consensus 516 ~~i~iwd~~~~~~------------------~~~~~~~~~~~i~~~~~s~~~~~l~-s~~~d~~i~iwd~~~ 568 (612)
|.|++||+..+.. ....+.+|..+|++++|+|++++|+ +++.|+.|++||+.+
T Consensus 282 g~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~ 353 (357)
T 3i2n_A 282 GGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTK 353 (357)
T ss_dssp SEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC
T ss_pred CcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCC
Confidence 9999999986432 2345677999999999999999998 899999999999987
No 68
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.2e-39 Score=304.84 Aligned_cols=301 Identities=14% Similarity=0.155 Sum_probs=253.4
Q ss_pred CCCCCceeEEEEccCCCEEEEec-CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCce
Q 007229 15 STERGRGILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFV 93 (612)
Q Consensus 15 ~~~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~ 93 (612)
..|++.|++++|+|+|++|++++ ++.|++||+.+++.+..+.+|...|.+++|+|++++|++++.||.|++||+.+++.
T Consensus 29 ~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 108 (369)
T 3zwl_B 29 TGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQC 108 (369)
T ss_dssp ECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCE
T ss_pred EEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE
Confidence 35788999999999999999998 89999999999999999999999999999999999999999999999999999884
Q ss_pred eeeeeeecCCCeEEEEECCCCCEEEEEeCC-----CCeeeEEEEEecCCc-----------eeeeeccCCc--eEEEEEE
Q 007229 94 LKNEFKVLSGRIDDLQWSPDGLRIVACGDG-----KGKSFVRAFMWDSGT-----------TVGDFDGHSR--RVLSCEF 155 (612)
Q Consensus 94 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~-----~~~~~i~i~~~~~~~-----------~~~~~~~~~~--~v~~~~~ 155 (612)
+ ..+. +...+.+++|+|+++++++++.+ + .+.+|+.+.+. .+..+..|.. .+.+++|
T Consensus 109 ~-~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g---~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (369)
T 3zwl_B 109 V-ATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPG---SINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGW 183 (369)
T ss_dssp E-EEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCC---EEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEE
T ss_pred E-EEee-cCCCeEEEEEccCCCEEEEecCCccCCCC---EEEEEEecCCccceeecccccceeeeccCCcCccceeEEEE
Confidence 3 3444 88999999999999999999887 5 56777776443 4455666766 9999999
Q ss_pred cCCCCEEEEEeecCCeEEEEeCCC-CeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCc
Q 007229 156 KPTRPFRIATCGEDFLVNFYEGPP-FKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGH 234 (612)
Q Consensus 156 ~~~~~~~l~~~~~d~~i~~wd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 234 (612)
+|+++ .+++++.||.|++||+.+ ++....+..|...|.+++|+|++++|++++.|+.|++||+.+++.+..+ .+
T Consensus 184 ~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~----~~ 258 (369)
T 3zwl_B 184 STKGK-YIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKY----ET 258 (369)
T ss_dssp CGGGC-EEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE----EC
T ss_pred cCCCC-EEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeee----cC
Confidence 99999 599999999999999998 7888889999999999999999999999999999999999999999888 57
Q ss_pred cccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcC
Q 007229 235 HGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSAS 314 (612)
Q Consensus 235 ~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 314 (612)
...+..++|+|+++++++++.++...+|.. ... .....+.+|+..
T Consensus 259 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~----~~~-------------------------------~~~~~i~~~d~~ 303 (369)
T 3zwl_B 259 DCPLNTAVITPLKEFIILGGGQEAKDVTTT----SAN-------------------------------EGKFEARFYHKI 303 (369)
T ss_dssp SSCEEEEEECSSSSEEEEEECCC------------------------------------------------CEEEEEETT
T ss_pred CCCceeEEecCCCceEEEeecCCCceEEEE----ecC-------------------------------CCcceeEEEecC
Confidence 889999999999999999999987666655 110 011245666644
Q ss_pred CCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCcee
Q 007229 315 NLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYS 362 (612)
Q Consensus 315 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~ 362 (612)
. ......+.+|...|.+++|++ ++++|++++.||.|++|++..+..
T Consensus 304 ~-~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~v~iw~~~~~~~ 349 (369)
T 3zwl_B 304 F-EEEIGRVQGHFGPLNTVAISP-QGTSYASGGEDGFIRLHHFEKSYF 349 (369)
T ss_dssp T-CCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEEECHHHH
T ss_pred C-CcchhheecccCcEEEEEECC-CCCEEEEEcCCCeEEEEECccccc
Confidence 3 344566778999999999984 278999999999999999987653
No 69
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.2e-41 Score=319.75 Aligned_cols=322 Identities=13% Similarity=0.135 Sum_probs=233.5
Q ss_pred CCceeEEEEccCCCEEEEec-CCEEEEEeCCCC--ceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCc--
Q 007229 18 RGRGILISGNPKTDTILYCN-GRSVLIRYLDKP--LHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGF-- 92 (612)
Q Consensus 18 ~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~--~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~-- 92 (612)
.+.|.+++|+|||++|++++ ++.|+|||+.++ +.+..+.+|...|++++|+|++++||+++.|+.|++||+.+++
T Consensus 11 ~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~ 90 (377)
T 3dwl_C 11 PKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTW 90 (377)
T ss_dssp SSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CC
T ss_pred CCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCce
Confidence 46899999999999999996 899999999988 7788899999999999999999999999999999999999876
Q ss_pred eeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCc---eeeeecc-CCceEEEEEEcCCCCEEEEEeec
Q 007229 93 VLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGT---TVGDFDG-HSRRVLSCEFKPTRPFRIATCGE 168 (612)
Q Consensus 93 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~---~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~ 168 (612)
.....+..|...|.+++|+|++++|++++.++ .+++|++++++ ....+.+ |...|.+++|+|+++ +|++++.
T Consensus 91 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~~~ 166 (377)
T 3dwl_C 91 KQTLVLLRLNRAATFVRWSPNEDKFAVGSGAR---VISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNV-LLAAGCA 166 (377)
T ss_dssp CCEEECCCCSSCEEEEECCTTSSCCEEEESSS---CEEECCC-----CCCCEEECSSCCSCEEEEEECTTSS-EEEEEES
T ss_pred eeeeEecccCCceEEEEECCCCCEEEEEecCC---eEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCC-EEEEEeC
Confidence 13345678999999999999999999999988 46777777666 4677887 999999999999998 5999999
Q ss_pred CCeEEEEeCC------------------CCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCe----ee
Q 007229 169 DFLVNFYEGP------------------PFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEK----IG 226 (612)
Q Consensus 169 d~~i~~wd~~------------------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~----~~ 226 (612)
|+.|++||+. .++++..+ +|...|.+++|+|++++|++++.|+.|++||+.+++. +.
T Consensus 167 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 245 (377)
T 3dwl_C 167 DRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALI 245 (377)
T ss_dssp SSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECC
T ss_pred CCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeE
Confidence 9999999985 35566667 8999999999999999999999999999999999987 55
Q ss_pred eeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccc----------eeeeeeeccC
Q 007229 227 EFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVE----------DMLVGCLWQN 296 (612)
Q Consensus 227 ~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~ 296 (612)
.+ ..|..+|.+++|+|++++|++++.++ +.+|+.... ..+....+......... ....++.+.
T Consensus 246 ~~---~~~~~~v~~~~~s~~~~~l~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 318 (377)
T 3dwl_C 246 TV---KLSQLPLRSLLWANESAIVAAGYNYS-PILLQGNES--GWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFT- 318 (377)
T ss_dssp CE---ECSSSCEEEEEEEETTEEEEEESSSS-EEEECCCC-----CCSBCCCSCCCCCCBSSSSSBCCCCCC--------
T ss_pred ee---cCCCCceEEEEEcCCCCEEEEEcCCc-EEEEEeCCC--ceEEEeeecccccccccccccccccccccccccccc-
Confidence 55 48899999999999999998887655 557776211 11111111111100000 000000000
Q ss_pred CEEEEEEcCCEEEEEEcCCC-CCCceeecCcccceeEEEEEecCCc---EEEEEecCCcEEEEEc
Q 007229 297 DHLITVSLGGIISIFSASNL-DKAPLSFSGHVKNVSTLTALKISQQ---TILSSSYDGAIIKWIR 357 (612)
Q Consensus 297 ~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~---~l~~~~~dg~i~~wd~ 357 (612)
.........+.... .........|...|+++.+.+..+. .+++++.||.|++||+
T Consensus 319 ------~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 319 ------ALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp ------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred ------cccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 00011111111100 0122334569999999998743344 7999999999999985
No 70
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=9.8e-40 Score=307.57 Aligned_cols=204 Identities=10% Similarity=0.108 Sum_probs=175.1
Q ss_pred eEeccCCCceEEEEECCCCCE-EEEeeC---cCeEEEeecCCCceeeeeeeecCCCeEEEEECCC---CCEEEEEeCCCC
Q 007229 53 EFYGEHGYPVTVARYSPNGEW-IASADV---SGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPD---GLRIVACGDGKG 125 (612)
Q Consensus 53 ~~~~~h~~~v~~~~~s~d~~~-las~~~---d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~---~~~l~~~~~~~~ 125 (612)
..+.+|...|.+++|+|+++. +++++. |+.|+|||+.+++........|...|.+++|+|+ +++|++++.++
T Consensus 12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg- 90 (357)
T 3i2n_A 12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGG- 90 (357)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTS-
T ss_pred hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCC-
Confidence 345789999999999999965 456665 9999999999988655555689999999999999 69999999888
Q ss_pred eeeEEEEEecCCc-eeeeeccCCceEEEEE------EcCCCCEEEEEeecCCeEEEEeCCCCe-eeeccccccc----ce
Q 007229 126 KSFVRAFMWDSGT-TVGDFDGHSRRVLSCE------FKPTRPFRIATCGEDFLVNFYEGPPFK-FKLSHREHSN----FV 193 (612)
Q Consensus 126 ~~~i~i~~~~~~~-~~~~~~~~~~~v~~~~------~~~~~~~~l~~~~~d~~i~~wd~~~~~-~~~~~~~~~~----~v 193 (612)
.+++|+.++++ .+..+.+|...|.+++ |+|+++ .|++++.||.|++||+.+++ ....+..|.+ .+
T Consensus 91 --~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v 167 (357)
T 3i2n_A 91 --NLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAP-EIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDC 167 (357)
T ss_dssp --CEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCC-EEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCE
T ss_pred --eEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCcc-EEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCce
Confidence 46788877777 8899999999999995 578888 59999999999999999887 5666655544 89
Q ss_pred EEEE----ECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEec---CCCEEEEEeCCCcEEEEEe
Q 007229 194 NCIR----FSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSP---DGKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 194 ~~~~----~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~---~~~~l~~~~~dg~i~iw~~ 264 (612)
.+++ |+|++++|++++.||.|++||+++++..... .|...|.+++|+| +++++++++.||.|++||+
T Consensus 168 ~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~ 241 (357)
T 3i2n_A 168 WTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWET----NIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDM 241 (357)
T ss_dssp EEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEE----ECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEE
T ss_pred EEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeec----CCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeC
Confidence 9998 7899999999999999999999999886665 7889999999999 9999999999999999999
No 71
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-40 Score=320.57 Aligned_cols=323 Identities=13% Similarity=0.147 Sum_probs=247.2
Q ss_pred EEcCCCCEEEEEeecCCeEEEEeCCCCeeeecc-cccccceEEEEECC-CCCeEEEEEcCCcEEEEecCC---CCe---e
Q 007229 154 EFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSH-REHSNFVNCIRFSP-DGSKLISVSSDRKGLIYDGKS---GEK---I 225 (612)
Q Consensus 154 ~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~-~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~---~~~---~ 225 (612)
.|+|++.. +++++ .|+ .+++.+..+ .+|.+.|.+++|+| ++++|++|+.||+|++||+.+ +.. .
T Consensus 34 ~f~~~~~~-~~~~~------~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~ 105 (437)
T 3gre_A 34 EFGPIQEI-VRSPN------MGN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSS 105 (437)
T ss_dssp GGCCCCCC-CCCCC------GGG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCS
T ss_pred hcCCcccc-ccccc------ccc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCccccee
Confidence 36777773 55554 387 556777777 89999999999999 999999999999999999877 442 2
Q ss_pred eeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcC
Q 007229 226 GEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLG 305 (612)
Q Consensus 226 ~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (612)
..+ .|...|.+++|+|++++|++++.||.|++||+... ..++....+...
T Consensus 106 ~~~----~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~-~~~~~~~~~~~~------------------------- 155 (437)
T 3gre_A 106 LTY----DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHY-QQESEVKFLNCE------------------------- 155 (437)
T ss_dssp EEE----ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEE-EETTEEEEEEEE-------------------------
T ss_pred eec----cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccc-cCCceeeccccc-------------------------
Confidence 333 68999999999999999999999999999998311 022333222211
Q ss_pred CEEEEEEcCCCCCCceeecC--cccceeEEEEE-ecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccE
Q 007229 306 GIISIFSASNLDKAPLSFSG--HVKNVSTLTAL-KISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEV 382 (612)
Q Consensus 306 ~~i~~~~~~~~~~~~~~~~~--~~~~v~~~~~~-~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~ 382 (612)
.+.-+. +.. +...+.++.+. .+++..+++++.||.|++||+++++.......
T Consensus 156 -~i~~~~----------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-------------- 210 (437)
T 3gre_A 156 -CIRKIN----------LKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIEN-------------- 210 (437)
T ss_dssp -EEEEEE----------GGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEEC--------------
T ss_pred -eeEEEE----------ccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEcc--------------
Confidence 011111 111 55667777766 45588999999999999999887654333220
Q ss_pred EEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCC
Q 007229 383 IFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDG 462 (612)
Q Consensus 383 l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 462 (612)
..+...|++++|+|++
T Consensus 211 ----------------------------------------------------------------~~h~~~v~~~~~s~~~ 226 (437)
T 3gre_A 211 ----------------------------------------------------------------SPRHGAVSSICIDEEC 226 (437)
T ss_dssp ----------------------------------------------------------------CGGGCCEEEEEECTTS
T ss_pred ----------------------------------------------------------------CCCCCceEEEEECCCC
Confidence 0134568999999999
Q ss_pred CeEEEEecCCeEEEEEccCcccccceeec-cccCceEEEEEc----CCCcEEEEEcCCCeEEEEecCCcceeeecc----
Q 007229 463 SEAIVGGQNGKLHIYSISGNTLTEEMVLE-KHRGAITVIQYS----PDVSMFASADGNREAIVWDRVSKEVKLNNM---- 533 (612)
Q Consensus 463 ~~l~~~~~dg~v~i~d~~~~~~~~~~~~~-~~~~~i~~~~~s----~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~---- 533 (612)
++|++|+.||.|++||+++++. ...+. .|..+|++++|+ |++.+|++++.||.|++||+.+++.+....
T Consensus 227 ~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 304 (437)
T 3gre_A 227 CVLILGTTRGIIDIWDIRFNVL--IRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDE 304 (437)
T ss_dssp CEEEEEETTSCEEEEETTTTEE--EEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSS
T ss_pred CEEEEEcCCCeEEEEEcCCccE--EEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCC
Confidence 9999999999999999998776 45444 677899999555 578899999999999999999887653221
Q ss_pred -------------------cc--cccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeecc-------------
Q 007229 534 -------------------LF--HTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNA------------- 579 (612)
Q Consensus 534 -------------------~~--~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~------------- 579 (612)
.+ |...|++++|+ ++++|++++.|+.|++||+.+ + ++...+.+
T Consensus 305 ~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~-~-~~~~~~~~~~~~~~~~~~~~~ 381 (437)
T 3gre_A 305 QPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNE-L-SSSKAVISPSRFSDVFIPTQV 381 (437)
T ss_dssp CCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTC-G-GGCEEEECC--CCCEEEEEEE
T ss_pred CCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCC-c-ccceEEecccccCceEEEEEe
Confidence 12 67789999999 789999999999999999988 4 44444443
Q ss_pred ------------------------cccCeeeEEEe-c--CceEEEccCCCeEEEEE
Q 007229 580 ------------------------HLGGVYGVAFM-D--DFNVVSSGEDACIRVWR 608 (612)
Q Consensus 580 ------------------------h~~~v~~~~~~-~--~~~l~s~~~d~~i~~w~ 608 (612)
|.+.|++++|+ + +.+|++++.||.|++|+
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 382 TANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp ETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred ecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 89999999999 5 66899999999999995
No 72
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=3e-39 Score=330.24 Aligned_cols=303 Identities=19% Similarity=0.281 Sum_probs=244.4
Q ss_pred CCCCCceeEEEEccCC-CEEEEec-CCEEEEEeCCCC-----ceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEee
Q 007229 15 STERGRGILISGNPKT-DTILYCN-GRSVLIRYLDKP-----LHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWG 87 (612)
Q Consensus 15 ~~~~~~v~~~~~s~d~-~~l~~~~-~~~i~i~~~~~~-----~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd 87 (612)
..|++.|++++|+|++ ++|++++ |+.|++||+.+. ...+.+.+|...|++++|+|++++|++|+.||+|+|||
T Consensus 379 ~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd 458 (694)
T 3dm0_A 379 RAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWD 458 (694)
T ss_dssp ECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred ccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence 4689999999999975 6888887 899999999753 34567899999999999999999999999999999999
Q ss_pred cCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeee---eccCCceEEEEEEcCCCC-EEE
Q 007229 88 THNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGD---FDGHSRRVLSCEFKPTRP-FRI 163 (612)
Q Consensus 88 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~-~~l 163 (612)
+.+++ ....+.+|...|.+++|+|++++|++++.++ .+++|+......... ..+|...|.+++|+|++. ..+
T Consensus 459 ~~~~~-~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~---~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l 534 (694)
T 3dm0_A 459 LAAGV-STRRFVGHTKDVLSVAFSLDNRQIVSASRDR---TIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTI 534 (694)
T ss_dssp TTTTE-EEEEEECCSSCEEEEEECTTSSCEEEEETTS---CEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEE
T ss_pred CCCCc-ceeEEeCCCCCEEEEEEeCCCCEEEEEeCCC---EEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceE
Confidence 99987 5567889999999999999999999999998 355555433322222 257999999999999872 369
Q ss_pred EEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEE
Q 007229 164 ATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSW 243 (612)
Q Consensus 164 ~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~ 243 (612)
++++.|++|++||+.+++....+.+|...|.+++|+|++++|++++.||.|++||+.+++.+..+ .+...+.+++|
T Consensus 535 ~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~----~~~~~v~~~~~ 610 (694)
T 3dm0_A 535 VSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSL----EANSVIHALCF 610 (694)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECC----BCSSCEEEEEE
T ss_pred EEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEe----cCCCcEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999988877 56678999999
Q ss_pred ecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceee
Q 007229 244 SPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSF 323 (612)
Q Consensus 244 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 323 (612)
+|++.++++++ ++.|++||+ .+++.+..+........... ........
T Consensus 611 sp~~~~l~~~~-~~~i~iwd~----~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~ 658 (694)
T 3dm0_A 611 SPNRYWLCAAT-EHGIKIWDL----ESKSIVEDLKVDLKAEAEKA---------------------------DNSGPAAT 658 (694)
T ss_dssp CSSSSEEEEEE-TTEEEEEET----TTTEEEEEECCCCC-----------------------------------------
T ss_pred cCCCcEEEEEc-CCCEEEEEC----CCCCChhhhccccccccccc---------------------------cccccccC
Confidence 99998777665 567999999 88888777654321100000 00000011
Q ss_pred cCcccceeEEEEEecCCcEEEEEecCCcEEEEEcC
Q 007229 324 SGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRG 358 (612)
Q Consensus 324 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~ 358 (612)
..+...+++++|++ ++++|++|+.||.|++|++.
T Consensus 659 ~~~~~~~~~l~~sp-dg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 659 KRKVIYCTSLNWSA-DGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp --CCCCEEEEEECT-TSSEEEEEETTSEEEEEEC-
T ss_pred CceeEEeeeEEEcC-CCCEEEEEcCCCeEEEEecc
Confidence 12333467788873 28999999999999999975
No 73
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=2.4e-39 Score=307.39 Aligned_cols=298 Identities=16% Similarity=0.139 Sum_probs=239.1
Q ss_pred cCCceeeeeccCCceEEEEEEcCCC-CEEEEEeecCCeEEEEeCCCCeeeeccc--ccccceEEEEECC-CCCeEEEEEc
Q 007229 135 DSGTTVGDFDGHSRRVLSCEFKPTR-PFRIATCGEDFLVNFYEGPPFKFKLSHR--EHSNFVNCIRFSP-DGSKLISVSS 210 (612)
Q Consensus 135 ~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~--~~~~~v~~~~~s~-~~~~l~~~~~ 210 (612)
+..+....+.+|...|.+++|+|++ + +|++|+.||.|++||+.+++....+. +|...|.+++|+| ++++|++++.
T Consensus 61 ~~~~~~~~~~~h~~~v~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~ 139 (383)
T 3ei3_B 61 KSYKLHRTASPFDRRVTSLEWHPTHPT-TVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSI 139 (383)
T ss_dssp TTCEEEEEECCCSSCEEEEEECSSCTT-EEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEET
T ss_pred cccceEEeccCCCCCEEEEEECCCCCC-EEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeC
Confidence 3455677889999999999999999 6 69999999999999999887776654 6999999999999 7899999999
Q ss_pred CCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeee
Q 007229 211 DRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLV 290 (612)
Q Consensus 211 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (612)
|+.|++||+++ .....+.....+...|.+++|+|++++|++++.|+.|++||+ . ++.+
T Consensus 140 d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~----~-~~~~---------------- 197 (383)
T 3ei3_B 140 RGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL----D-GHEI---------------- 197 (383)
T ss_dssp TTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET----T-SCEE----------------
T ss_pred CCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC----C-CCEE----------------
Confidence 99999999985 555555434456688999999999999999999999999998 2 2222
Q ss_pred eeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecc
Q 007229 291 GCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYD 370 (612)
Q Consensus 291 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~ 370 (612)
..+.+|...|.+++|++....++++++.|+.|++||+++.....
T Consensus 198 ------------------------------~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~------ 241 (383)
T 3ei3_B 198 ------------------------------FKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKN------ 241 (383)
T ss_dssp ------------------------------EEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTT------
T ss_pred ------------------------------EEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCccc------
Confidence 33446888999999995434499999999999999987632110
Q ss_pred cceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeeccc
Q 007229 371 ARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLG 450 (612)
Q Consensus 371 ~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (612)
.....+.+.
T Consensus 242 -----------------------------------------------------------------------~~~~~~~~~ 250 (383)
T 3ei3_B 242 -----------------------------------------------------------------------SYIAEMPHE 250 (383)
T ss_dssp -----------------------------------------------------------------------CEEEEEECS
T ss_pred -----------------------------------------------------------------------ceEEEecCC
Confidence 011122345
Q ss_pred ceEEEEEEcc-CCCeEEEEecCCeEEEEEccCcccccceeecccc-----------------CceEEEEEcCCCcEEEEE
Q 007229 451 FTVTACAIAP-DGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHR-----------------GAITVIQYSPDVSMFASA 512 (612)
Q Consensus 451 ~~i~~~~~s~-~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~-----------------~~i~~~~~s~~~~~l~~~ 512 (612)
..+++++|+| ++++|++++.|+.|++||+.+++. ...+..|. +.+..++|+|++++ ++
T Consensus 251 ~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~ 326 (383)
T 3ei3_B 251 KPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSK--PDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LL 326 (383)
T ss_dssp SCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTS--CSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CT
T ss_pred CceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcc--ccccccccccccccccceEEeccCCCCceEEEecCCccc--cc
Confidence 5799999999 999999999999999999988765 23333332 34455777777777 78
Q ss_pred cCCCeEEEEecCCcceeeecccc--cccceeEEEecCCCcEEEEeecCcEEEEEEccC
Q 007229 513 DGNREAIVWDRVSKEVKLNNMLF--HTARINCLAWSPSSTMVATGSIDTCVIIYEIGK 568 (612)
Q Consensus 513 ~~d~~i~iwd~~~~~~~~~~~~~--~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~ 568 (612)
+.|+.|++||+.+++.+. .+.+ |...+..++|+|++++|++++ |+.|++||+++
T Consensus 327 s~d~~i~iwd~~~~~~~~-~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 327 NDKRTIDIYDANSGGLVH-QLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp TCCCCEEEEETTTCCEEE-EECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred CCCCeEEEEecCCCceee-eecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 899999999999998864 4544 567788889999999999997 99999999875
No 74
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=9.8e-40 Score=305.27 Aligned_cols=295 Identities=12% Similarity=0.062 Sum_probs=217.7
Q ss_pred ceeEEEEccCCCEEEEecC--------CEEEEEeCCCCcee----------eEeccCCCceEEEEECCCCCEEEEee---
Q 007229 20 RGILISGNPKTDTILYCNG--------RSVLIRYLDKPLHV----------EFYGEHGYPVTVARYSPNGEWIASAD--- 78 (612)
Q Consensus 20 ~v~~~~~s~d~~~l~~~~~--------~~i~i~~~~~~~~~----------~~~~~h~~~v~~~~~s~d~~~las~~--- 78 (612)
.|.+++|+|||++|++|++ +.|++|++..+... ..+.+|+..|.+++++ ++.+++|.
T Consensus 16 PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~~~ 93 (365)
T 4h5i_A 16 PAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCNEN 93 (365)
T ss_dssp CEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECCCC
T ss_pred CEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEECCC
Confidence 5899999999999999863 36999998755321 2367888999888765 45677664
Q ss_pred --------CcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceE
Q 007229 79 --------VSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRV 150 (612)
Q Consensus 79 --------~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v 150 (612)
.|+.+++|++........... ... ......+...+
T Consensus 94 ~~~l~s~~~d~~~r~~~~~~~~~~~~~~~-------~~~------------------------------~~~~~~~~~~~ 136 (365)
T 4h5i_A 94 STKITQGKGNKHLRKFKYDKVNDQLEFLT-------SVD------------------------------FDASTNADDYT 136 (365)
T ss_dssp HHHHHHTSCCCCEEEEEEETTTTEEEEEE-------EEC------------------------------SSCCCCTTCCE
T ss_pred ccEEEEecCCCcEEEEEecCCCceEEEee-------eec------------------------------eeecCCcccCE
Confidence 455666666654432111000 000 01123355678
Q ss_pred EEEEEcCCCCEE-EEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeee
Q 007229 151 LSCEFKPTRPFR-IATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFS 229 (612)
Q Consensus 151 ~~~~~~~~~~~~-l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 229 (612)
.+++|+|||+++ +++++.|++|++||+++++++..+. |...|.+++|+|||++|++++. +.+++|+..+++......
T Consensus 137 ~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~-~~~~~~~~~~~~~~~~~~ 214 (365)
T 4h5i_A 137 KLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITG-SSLEVISTVTGSCIARKT 214 (365)
T ss_dssp EEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECS-SCEEEEETTTCCEEEEEC
T ss_pred EEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccc-eeEEEEEeccCcceeeee
Confidence 899999999963 2356689999999999999988875 7788999999999999999875 567777777777765432
Q ss_pred ccCCccccEEEEEEecCCCEEEEEeCCC----cEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcC
Q 007229 230 SEDGHHGSIYAVSWSPDGKKVLTVSADK----SAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLG 305 (612)
Q Consensus 230 ~~~~~~~~v~~i~~~~~~~~l~~~~~dg----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (612)
...|...|.+++|+|+++++++++.|+ .+++|++ ........
T Consensus 215 -~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~----~~~~~~~~----------------------------- 260 (365)
T 4h5i_A 215 -DFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISI----KSGNTSVL----------------------------- 260 (365)
T ss_dssp -CCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEE----ETTEEEEE-----------------------------
T ss_pred -cCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeeccc----ccceecce-----------------------------
Confidence 237888999999999999999998876 4666665 11110000
Q ss_pred CEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEE
Q 007229 306 GIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFT 385 (612)
Q Consensus 306 ~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~ 385 (612)
...
T Consensus 261 -----------------------------------------------~~~------------------------------ 263 (365)
T 4h5i_A 261 -----------------------------------------------RSK------------------------------ 263 (365)
T ss_dssp -----------------------------------------------EEE------------------------------
T ss_pred -----------------------------------------------eee------------------------------
Confidence 000
Q ss_pred ecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeE
Q 007229 386 AGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEA 465 (612)
Q Consensus 386 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 465 (612)
....+...|++++|+|||++|
T Consensus 264 -----------------------------------------------------------~~~~~~~~V~~~~~Spdg~~l 284 (365)
T 4h5i_A 264 -----------------------------------------------------------QVTNRFKGITSMDVDMKGELA 284 (365)
T ss_dssp -----------------------------------------------------------EEESSCSCEEEEEECTTSCEE
T ss_pred -----------------------------------------------------------eecCCCCCeEeEEECCCCCce
Confidence 000122358899999999999
Q ss_pred EEEecCCeEEEEEccCccccccee-eccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcc
Q 007229 466 IVGGQNGKLHIYSISGNTLTEEMV-LEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKE 527 (612)
Q Consensus 466 ~~~~~dg~v~i~d~~~~~~~~~~~-~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~ 527 (612)
|+|+.|+.|+|||+.++++ ... +.+|..+|++++|||||++||+++.|++|+|||+....
T Consensus 285 asgs~D~~V~iwd~~~~~~--~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~~ 345 (365)
T 4h5i_A 285 VLASNDNSIALVKLKDLSM--SKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLNY 345 (365)
T ss_dssp EEEETTSCEEEEETTTTEE--EEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTTT
T ss_pred EEEcCCCEEEEEECCCCcE--EEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCCC
Confidence 9999999999999998876 444 57899999999999999999999999999999996543
No 75
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.1e-39 Score=306.93 Aligned_cols=304 Identities=19% Similarity=0.240 Sum_probs=240.0
Q ss_pred eccCCCc--eEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEE
Q 007229 55 YGEHGYP--VTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAF 132 (612)
Q Consensus 55 ~~~h~~~--v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~ 132 (612)
..+|... +.+++|++ ..+++++.|+.|++||+.+++........|...|.+++|+|++++|++++.++ .+.+|
T Consensus 87 ~~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg---~i~iw 161 (401)
T 4aez_A 87 APGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNG---LVDIY 161 (401)
T ss_dssp CTTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTS---CEEEE
T ss_pred CCCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCC---eEEEE
Confidence 3356554 44566665 45778889999999999999854433344889999999999999999999888 57888
Q ss_pred EecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCC-CCeeeecccccccceEEEEECCCCCeEEEEEcC
Q 007229 133 MWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGP-PFKFKLSHREHSNFVNCIRFSPDGSKLISVSSD 211 (612)
Q Consensus 133 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 211 (612)
+.++++.+..+.+|...|.+++|++ . .+++++.||.|++||+. .......+.+|...|.+++|+|++++|++++.|
T Consensus 162 d~~~~~~~~~~~~~~~~v~~~~~~~--~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d 238 (401)
T 4aez_A 162 DVESQTKLRTMAGHQARVGCLSWNR--H-VLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGND 238 (401)
T ss_dssp ETTTCCEEEEECCCSSCEEEEEEET--T-EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred ECcCCeEEEEecCCCCceEEEEECC--C-EEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCC
Confidence 8889999999999999999999954 4 69999999999999998 566677788999999999999999999999999
Q ss_pred CcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCC-EEEEEe--CCCcEEEEEeecCCCCCeeEeeeeccCcccccee
Q 007229 212 RKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGK-KVLTVS--ADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDM 288 (612)
Q Consensus 212 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (612)
+.|++||+.+++....+ ..|...|.+++|+|++. ++++++ .|+.|++||+ .+++.+..+.
T Consensus 239 ~~v~iwd~~~~~~~~~~---~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~----~~~~~~~~~~---------- 301 (401)
T 4aez_A 239 NVVQIWDARSSIPKFTK---TNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNA----ATGARVNTVD---------- 301 (401)
T ss_dssp SCEEEEETTCSSEEEEE---CCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEET----TTCCEEEEEE----------
T ss_pred CeEEEccCCCCCccEEe---cCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEEC----CCCCEEEEEe----------
Confidence 99999999999888877 37899999999999765 445544 6999999998 4333222110
Q ss_pred eeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeecee
Q 007229 289 LVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKK 368 (612)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~ 368 (612)
T Consensus 302 -------------------------------------------------------------------------------- 301 (401)
T 4aez_A 302 -------------------------------------------------------------------------------- 301 (401)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeec
Q 007229 369 YDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKID 448 (612)
Q Consensus 369 ~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (612)
T Consensus 302 -------------------------------------------------------------------------------- 301 (401)
T 4aez_A 302 -------------------------------------------------------------------------------- 301 (401)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccceEEEEEEccCCCeEEE--EecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCc
Q 007229 449 LGFTVTACAIAPDGSEAIV--GGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSK 526 (612)
Q Consensus 449 ~~~~i~~~~~s~~~~~l~~--~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~ 526 (612)
+...+.+++|+|+++++++ |+.||.|++||+.++.......+.+|...|.+++|+|++++|++++.||.|++||+.++
T Consensus 302 ~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~ 381 (401)
T 4aez_A 302 AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDG 381 (401)
T ss_dssp CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC-
T ss_pred CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence 1124778999999999999 55899999999998777656678899999999999999999999999999999999998
Q ss_pred ceeeecccccccceeEE
Q 007229 527 EVKLNNMLFHTARINCL 543 (612)
Q Consensus 527 ~~~~~~~~~~~~~i~~~ 543 (612)
+.+......+..+...+
T Consensus 382 ~~~~~~~~~~~~~~~~i 398 (401)
T 4aez_A 382 DHVKRPIPITKTPSSSI 398 (401)
T ss_dssp -----------------
T ss_pred ccccccccccCCCccce
Confidence 87654444344444443
No 76
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4e-39 Score=297.37 Aligned_cols=290 Identities=18% Similarity=0.227 Sum_probs=244.9
Q ss_pred CCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEE
Q 007229 136 SGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGL 215 (612)
Q Consensus 136 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 215 (612)
..+....+.+|...|.+++| |+++ ++++++.||.|++||+.+++....+..|...|.+++|+|++++|++++.|+.++
T Consensus 7 ~~~~~~~l~~h~~~v~~~~~-~~~~-~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 84 (313)
T 3odt_A 7 GYQLSATLKGHDQDVRDVVA-VDDS-KVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMIN 84 (313)
T ss_dssp CCEEEEEECCCSSCEEEEEE-EETT-EEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred cHHHHHHhhCCCCCcEEEEe-cCCC-EEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEE
Confidence 34677889999999999999 8888 599999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeecc
Q 007229 216 IYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQ 295 (612)
Q Consensus 216 vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (612)
+|++..............|...|.+++| +++++++++.||.|++||. ++..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d~------~~~~--------------------- 135 (313)
T 3odt_A 85 GVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWKE------GSLV--------------------- 135 (313)
T ss_dssp EEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEET------TEEE---------------------
T ss_pred EEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEcC------CcEE---------------------
Confidence 9998775432222222589999999999 5779999999999999984 2222
Q ss_pred CCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEE
Q 007229 296 NDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKC 375 (612)
Q Consensus 296 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~ 375 (612)
..+..|...+.++.+.+.+++.+++++.||.|++||.... ....
T Consensus 136 -------------------------~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~--~~~~--------- 179 (313)
T 3odt_A 136 -------------------------YNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKV--IKTF--------- 179 (313)
T ss_dssp -------------------------EEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTEE--EEEE---------
T ss_pred -------------------------EecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCce--EEEE---------
Confidence 2344578889999998767899999999999999983211 1110
Q ss_pred EEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEE
Q 007229 376 LAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTA 455 (612)
Q Consensus 376 ~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 455 (612)
...+...+.+
T Consensus 180 ----------------------------------------------------------------------~~~~~~~i~~ 189 (313)
T 3odt_A 180 ----------------------------------------------------------------------SGIHNDVVRH 189 (313)
T ss_dssp ----------------------------------------------------------------------CSSCSSCEEE
T ss_pred ----------------------------------------------------------------------eccCcccEEE
Confidence 0113346899
Q ss_pred EEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccc
Q 007229 456 CAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLF 535 (612)
Q Consensus 456 ~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 535 (612)
++|+|++. +++++.||.|++||+.+++. ...+..|..+|++++|+|++ .|++++.||.|++||+.+++.. ..+..
T Consensus 190 ~~~~~~~~-~~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~-~~~~~ 264 (313)
T 3odt_A 190 LAVVDDGH-FISCSNDGLIKLVDMHTGDV--LRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLK-QVITL 264 (313)
T ss_dssp EEEEETTE-EEEEETTSEEEEEETTTCCE--EEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEE-EEEEC
T ss_pred EEEcCCCe-EEEccCCCeEEEEECCchhh--hhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCcee-EEEec
Confidence 99999998 99999999999999998876 67788899999999999999 6889999999999999999886 55677
Q ss_pred cccceeEEEecCCCcEEEEeecCcEEEEEEccC
Q 007229 536 HTARINCLAWSPSSTMVATGSIDTCVIIYEIGK 568 (612)
Q Consensus 536 ~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~ 568 (612)
|..+|.+++|+|+++ +++++.||.|++||+++
T Consensus 265 ~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~ 296 (313)
T 3odt_A 265 PAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEK 296 (313)
T ss_dssp SSSCEEEEEECTTSC-EEEEETTSCEEEEESCG
T ss_pred cCceEEEEEEccCCC-EEEEeCCCcEEEEeCCC
Confidence 899999999999998 66789999999999987
No 77
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-41 Score=315.83 Aligned_cols=262 Identities=10% Similarity=-0.000 Sum_probs=208.4
Q ss_pred CCCCceeEEEEccCCCEEEEec-CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCcee
Q 007229 16 TERGRGILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVL 94 (612)
Q Consensus 16 ~~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~ 94 (612)
+....|.+++|||||+++|+++ |++|+ |.+.++ .+.+|...|.+++|+|+| .++.+.+|+.+... +
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~---~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~~-~ 79 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK---DINCNSKNLFHVKEFPLE-------FENKLDFELAQQNG-L 79 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCS---CCSSBGGGTEEEEEECCC-------CCCTTTTSCCCSSC-S
T ss_pred HhhccEEEEEECCCCCEEEEEcCCceee--cccccc---eecCCCccEEEEEECCCC-------CcceEEEEeCCCce-E
Confidence 4567899999999999999998 78888 755554 447999999999999999 46666666554332 1
Q ss_pred eeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCc-----eEEEEEEcCCCCEEEEEeecC
Q 007229 95 KNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSR-----RVLSCEFKPTRPFRIATCGED 169 (612)
Q Consensus 95 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~l~~~~~d 169 (612)
. .+ .|...|.+++|||||++||+++.++. +..|+....+..+. |.. .|.+++|||+|+ +|++|+.|
T Consensus 80 ~-~~-~~~~~V~~vawSPdG~~LAs~s~dg~-----V~iwd~~~~l~~l~-~~~~~~~~sv~svafSPDG~-~LAsgs~D 150 (588)
T 2j04_A 80 L-NS-QPVCYPRVCKPSPIDDWMAVLSNNGN-----VSVFKDNKMLTNLD-SKGNLSSRTYHCFEWNPIES-SIVVGNED 150 (588)
T ss_dssp S-TT-SCSCCEEEEEECSSSSCEEEEETTSC-----EEEEETTEEEEECC-CSSCSTTTCEEEEEECSSSS-CEEEEETT
T ss_pred e-ec-CCCCcEEEEEECCCCCEEEEEeCCCc-----EEEEeCCceeeecc-CCCccccccEEEEEEcCCCC-EEEEEcCC
Confidence 1 22 45889999999999999999999983 44555444777777 766 499999999999 59999999
Q ss_pred CeEEEEeCCCCee-------eecc----cccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCee---eeeeccCCcc
Q 007229 170 FLVNFYEGPPFKF-------KLSH----REHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKI---GEFSSEDGHH 235 (612)
Q Consensus 170 ~~i~~wd~~~~~~-------~~~~----~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~---~~~~~~~~~~ 235 (612)
|+|++||+.++.. +.++ .+|...|.+++|+||| +++++.|+++++||+.+++.. ..+ ..+|.
T Consensus 151 GtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL--~~~h~ 226 (588)
T 2j04_A 151 GELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMI--QNASR 226 (588)
T ss_dssp SEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEE--ECCCS
T ss_pred CEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeee--ccccc
Confidence 9999999998753 4554 6788999999999999 888899999999999887743 233 12678
Q ss_pred ccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCC
Q 007229 236 GSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASN 315 (612)
Q Consensus 236 ~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 315 (612)
..|.+++|+ ++.+++++ +++|++||+ .+++...
T Consensus 227 ~~V~svaFs--g~~LASa~-~~tIkLWd~----~~~~~~~---------------------------------------- 259 (588)
T 2j04_A 227 RKITDLKIV--DYKVVLTC-PGYVHKIDL----KNYSISS---------------------------------------- 259 (588)
T ss_dssp SCCCCEEEE--TTEEEEEC-SSEEEEEET----TTTEEEE----------------------------------------
T ss_pred CcEEEEEEE--CCEEEEEe-CCeEEEEEC----CCCeEEE----------------------------------------
Confidence 899999999 68888887 699999998 4444321
Q ss_pred CCCCceeecCcccceeEEEE--EecCCcEEEEEecCCcEEEEEcC
Q 007229 316 LDKAPLSFSGHVKNVSTLTA--LKISQQTILSSSYDGAIIKWIRG 358 (612)
Q Consensus 316 ~~~~~~~~~~~~~~v~~~~~--~~~~~~~l~~~~~dg~i~~wd~~ 358 (612)
...+|...+..+++ + +++..+++++.+|+ ++|..+
T Consensus 260 ------~~~gh~~~V~~va~~~s-~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 260 ------LKTGSLENFHIIPLNHE-KESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp ------EECSCCSCCCEEEETTC-SSCEEEEECSSCEE-EEEESS
T ss_pred ------EEcCCCceEEEEEeeeC-CCCCEEEEEcCCCC-EEEeec
Confidence 11258899999999 5 33678999999999 999765
No 78
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=4.1e-40 Score=317.08 Aligned_cols=298 Identities=15% Similarity=0.167 Sum_probs=231.6
Q ss_pred eeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCee--eecccccccceEEEEECC-CCCeEEEEEcCCcEE
Q 007229 139 TVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKF--KLSHREHSNFVNCIRFSP-DGSKLISVSSDRKGL 215 (612)
Q Consensus 139 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~--~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~ 215 (612)
......+|...|++++|+|.++.+||+|+.||.|++||+.+++. ...+.+|.+.|.+++|+| ++++|++++.||+|+
T Consensus 111 ~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~ 190 (435)
T 4e54_B 111 ILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTR 190 (435)
T ss_dssp SCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEE
T ss_pred ecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEE
Confidence 34455678999999999996554799999999999999987654 345678999999999998 688999999999999
Q ss_pred EEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeecc
Q 007229 216 IYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQ 295 (612)
Q Consensus 216 vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (612)
+||++++... .+.....+...+.+++|+|++++|++++.||.|++||+ .. +.
T Consensus 191 iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~----~~-~~---------------------- 242 (435)
T 4e54_B 191 LQDFKGNILR-VFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNM----DG-KE---------------------- 242 (435)
T ss_dssp EEETTSCEEE-EEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEES----SS-CB----------------------
T ss_pred EeeccCCcee-EEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeecc----Cc-ce----------------------
Confidence 9999765443 33222345567889999999999999999999999998 32 11
Q ss_pred CCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEE
Q 007229 296 NDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKC 375 (612)
Q Consensus 296 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~ 375 (612)
+..+.+|...|.+++|++....++++++.|+.|++||++........
T Consensus 243 ------------------------~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~--------- 289 (435)
T 4e54_B 243 ------------------------LWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASF--------- 289 (435)
T ss_dssp ------------------------CCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCC---------
T ss_pred ------------------------eEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceE---------
Confidence 23456789999999999655678999999999999998765432211
Q ss_pred EEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEE
Q 007229 376 LAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTA 455 (612)
Q Consensus 376 ~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 455 (612)
.....|...|++
T Consensus 290 --------------------------------------------------------------------~~~~~h~~~v~~ 301 (435)
T 4e54_B 290 --------------------------------------------------------------------LYSLPHRHPVNA 301 (435)
T ss_dssp --------------------------------------------------------------------SBCCBCSSCEEE
T ss_pred --------------------------------------------------------------------EEeeeccccccc
Confidence 111224567999
Q ss_pred EEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccC------ceEEEEEcCCCcEEEEEc------------CCCe
Q 007229 456 CAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRG------AITVIQYSPDVSMFASAD------------GNRE 517 (612)
Q Consensus 456 ~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~------~i~~~~~s~~~~~l~~~~------------~d~~ 517 (612)
++|+|++++|++++.||.|++||+.++.. ...+..|.. .+....|+|++.+++++. .++.
T Consensus 302 ~~~spdg~~l~s~~~D~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 379 (435)
T 4e54_B 302 ACFSPDGARLLTTDQKSEIRVYSASQWDC--PLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRT 379 (435)
T ss_dssp CCBCTTSSEEEEEESSSCEEEEESSSSSS--EEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCC
T ss_pred eeECCCCCeeEEEcCCCEEEEEECCCCcc--ceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCE
Confidence 99999999999999999999999988765 233333321 123345666666655553 3467
Q ss_pred EEEEecCCcceeeecccccccceeEE-EecCCCcEEEEeecCcEEEEEEccC
Q 007229 518 AIVWDRVSKEVKLNNMLFHTARINCL-AWSPSSTMVATGSIDTCVIIYEIGK 568 (612)
Q Consensus 518 i~iwd~~~~~~~~~~~~~~~~~i~~~-~~s~~~~~l~s~~~d~~i~iwd~~~ 568 (612)
|++||..+++.+.....+|...|.++ +|+|+|++||+|+ |+.|+||++++
T Consensus 380 i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~ 430 (435)
T 4e54_B 380 IDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQE 430 (435)
T ss_dssp EEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC-
T ss_pred EEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCc
Confidence 99999999998866677899999988 6999999999886 78899999987
No 79
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=4e-39 Score=292.94 Aligned_cols=246 Identities=20% Similarity=0.307 Sum_probs=211.2
Q ss_pred CCCCCceeEEEEccCCCEEEEec-CCEEEEEeCCC--CceeeEeccCCCceEEEEECCC--CCEEEEeeCcCeEEEeecC
Q 007229 15 STERGRGILISGNPKTDTILYCN-GRSVLIRYLDK--PLHVEFYGEHGYPVTVARYSPN--GEWIASADVSGSVRIWGTH 89 (612)
Q Consensus 15 ~~~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~--~~~~~~~~~h~~~v~~~~~s~d--~~~las~~~d~~i~iwd~~ 89 (612)
..|.+.|.+++|+|||++||+++ |+.|+|||+++ ++.+..+.+|.+.|.+++|+|+ +++||+|+.|++|+|||+.
T Consensus 6 ~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~ 85 (297)
T 2pm7_B 6 NAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEE 85 (297)
T ss_dssp CSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBS
T ss_pred cCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcC
Confidence 45788999999999999999998 89999999974 3677889999999999999874 8999999999999999999
Q ss_pred CCce-eeeeeeecCCCeEEEEECCC--CCEEEEEeCCCCeeeEEEEEecCCc--eeeeeccCCceEEEEEEcCC------
Q 007229 90 NGFV-LKNEFKVLSGRIDDLQWSPD--GLRIVACGDGKGKSFVRAFMWDSGT--TVGDFDGHSRRVLSCEFKPT------ 158 (612)
Q Consensus 90 ~~~~-~~~~~~~~~~~i~~~~~s~~--~~~l~~~~~~~~~~~i~i~~~~~~~--~~~~~~~~~~~v~~~~~~~~------ 158 (612)
+++. ....+..|...|.+++|+|+ +.+|++++.++ .+++|++..+. ....+.+|...|.+++|+|+
T Consensus 86 ~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~---~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~ 162 (297)
T 2pm7_B 86 NGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDG---KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG 162 (297)
T ss_dssp SSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTS---EEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-----
T ss_pred CCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCC---cEEEEEecCCCceeeeeeecccCccceEeecCCcccccc
Confidence 8742 33456789999999999998 89999999998 57888877553 24667899999999999997
Q ss_pred -------CCEEEEEeecCCeEEEEeCCCCe----eeecccccccceEEEEECCCC---CeEEEEEcCCcEEEEecCCCCe
Q 007229 159 -------RPFRIATCGEDFLVNFYEGPPFK----FKLSHREHSNFVNCIRFSPDG---SKLISVSSDRKGLIYDGKSGEK 224 (612)
Q Consensus 159 -------~~~~l~~~~~d~~i~~wd~~~~~----~~~~~~~~~~~v~~~~~s~~~---~~l~~~~~dg~i~vwd~~~~~~ 224 (612)
++ +|++|+.|++|++||+.+++ ....+.+|...|.+++|+|++ ++|++++.|++|++||++++..
T Consensus 163 ~~~~~~~~~-~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~ 241 (297)
T 2pm7_B 163 EHNGTKESR-KFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQG 241 (297)
T ss_dssp -------CC-EEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTS
T ss_pred cCCCCCCcc-eEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCC
Confidence 34 69999999999999988765 566788999999999999985 7999999999999999987532
Q ss_pred --eeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEe
Q 007229 225 --IGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 225 --~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~ 264 (612)
.........|...|.+++|+|++++|++++.||.|++|+.
T Consensus 242 ~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~ 283 (297)
T 2pm7_B 242 PWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE 283 (297)
T ss_dssp CCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEE
T ss_pred ccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEE
Confidence 1112111367889999999999999999999999999998
No 80
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-38 Score=292.75 Aligned_cols=289 Identities=15% Similarity=0.215 Sum_probs=245.1
Q ss_pred CceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeee
Q 007229 49 PLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSF 128 (612)
Q Consensus 49 ~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~ 128 (612)
.+..+.+.+|.+.|++++| |++++||+++.||.|++||+.+++ ....+..|...|.+++|+|++++|++++.++ .
T Consensus 8 ~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~ 82 (313)
T 3odt_A 8 YQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQW-LGTVVYTGQGFLNSVCYDSEKELLLFGGKDT---M 82 (313)
T ss_dssp CEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSE-EEEEEEECSSCEEEEEEETTTTEEEEEETTS---C
T ss_pred HHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCE-EEEEeecCCccEEEEEECCCCCEEEEecCCC---e
Confidence 3667889999999999999 999999999999999999998877 5667889999999999999999999999998 4
Q ss_pred EEEEEec---CCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECC-CCCe
Q 007229 129 VRAFMWD---SGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSP-DGSK 204 (612)
Q Consensus 129 i~i~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~ 204 (612)
+.+|... .++.+..+.+|...|.+++|. ++ .+++++.|+.|++|| .++....+..|...+.+++|+| ++++
T Consensus 83 i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~-~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~ 157 (313)
T 3odt_A 83 INGVPLFATSGEDPLYTLIGHQGNVCSLSFQ--DG-VVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENK 157 (313)
T ss_dssp EEEEETTCCTTSCC-CEECCCSSCEEEEEEE--TT-EEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTE
T ss_pred EEEEEeeecCCCCcccchhhcccCEEEEEec--CC-EEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCE
Confidence 5666655 346788899999999999994 45 699999999999999 6777888889999999999998 8999
Q ss_pred EEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccc
Q 007229 205 LISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNA 284 (612)
Q Consensus 205 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 284 (612)
+++++.|+.|++|| .++....+. ..|...+.+++|+|++. +++++.||.|++||+ .+++.+..+..
T Consensus 158 l~~~~~d~~i~i~d--~~~~~~~~~--~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~----~~~~~~~~~~~----- 223 (313)
T 3odt_A 158 FLTASADKTIKLWQ--NDKVIKTFS--GIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDM----HTGDVLRTYEG----- 223 (313)
T ss_dssp EEEEETTSCEEEEE--TTEEEEEEC--SSCSSCEEEEEEEETTE-EEEEETTSEEEEEET----TTCCEEEEEEC-----
T ss_pred EEEEECCCCEEEEe--cCceEEEEe--ccCcccEEEEEEcCCCe-EEEccCCCeEEEEEC----Cchhhhhhhhc-----
Confidence 99999999999999 445555552 24889999999999998 889999999999998 43332221110
Q ss_pred cceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeee
Q 007229 285 VEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSK 364 (612)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~ 364 (612)
T Consensus 224 -------------------------------------------------------------------------------- 223 (313)
T 3odt_A 224 -------------------------------------------------------------------------------- 223 (313)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccce
Q 007229 365 LEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVM 444 (612)
Q Consensus 365 ~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (612)
T Consensus 224 -------------------------------------------------------------------------------- 223 (313)
T 3odt_A 224 -------------------------------------------------------------------------------- 223 (313)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecC
Q 007229 445 SKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRV 524 (612)
Q Consensus 445 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~ 524 (612)
+...+++++|+|++ .+++++.||.|++||+.+++. ...+..|..+|.+++|+|+++ +++++.||.|++||+.
T Consensus 224 ----~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~--~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~ 295 (313)
T 3odt_A 224 ----HESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSL--KQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQE 295 (313)
T ss_dssp ----CSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCE--EEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESC
T ss_pred ----CCceEEEEEEecCC-CEEEEecCCEEEEEECCCCce--eEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCC
Confidence 11247788999998 688999999999999998876 677788999999999999998 5678899999999999
Q ss_pred Cccee
Q 007229 525 SKEVK 529 (612)
Q Consensus 525 ~~~~~ 529 (612)
+++..
T Consensus 296 ~~~~~ 300 (313)
T 3odt_A 296 KSRWA 300 (313)
T ss_dssp GGGCC
T ss_pred CCcee
Confidence 88765
No 81
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=4.6e-39 Score=304.20 Aligned_cols=307 Identities=16% Similarity=0.216 Sum_probs=240.1
Q ss_pred eEeccCCCceEEEEECCC----CCEEEEeeCcCeEEEeecCCCceeeeeeee-----cCCCeEEEEECCC----CCEEEE
Q 007229 53 EFYGEHGYPVTVARYSPN----GEWIASADVSGSVRIWGTHNGFVLKNEFKV-----LSGRIDDLQWSPD----GLRIVA 119 (612)
Q Consensus 53 ~~~~~h~~~v~~~~~s~d----~~~las~~~d~~i~iwd~~~~~~~~~~~~~-----~~~~i~~~~~s~~----~~~l~~ 119 (612)
....+|...|++++|+|+ ...+++++.++.|++||+.+++.+ ..+.. |...|.+++|+|+ +++|++
T Consensus 12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~ 90 (366)
T 3k26_A 12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEI-RLLQSYVDADADENFYTCAWTYDSNTSHPLLAV 90 (366)
T ss_dssp EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCE-EEEEEEECSCTTCCEEEEEEEECTTTCCEEEEE
T ss_pred EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEE-EeeeeccccCCCCcEEEEEeccCCCCCCCEEEE
Confidence 345689999999999984 455666666779999999987743 34443 5578999999999 678999
Q ss_pred EeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcC-CCCEEEEEeecCCeEEEEeCCCCeeeecc---cccccceEE
Q 007229 120 CGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKP-TRPFRIATCGEDFLVNFYEGPPFKFKLSH---REHSNFVNC 195 (612)
Q Consensus 120 ~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~d~~i~~wd~~~~~~~~~~---~~~~~~v~~ 195 (612)
++.++ .+.+|+.++++.+..+.+|...|.+++|+| ++. ++++++.||.|++||+.+++.+..+ .+|...|.+
T Consensus 91 ~~~dg---~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~ 166 (366)
T 3k26_A 91 AGSRG---IIRIINPITMQCIKHYVGHGNAINELKFHPRDPN-LLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLS 166 (366)
T ss_dssp EETTC---EEEEECTTTCCEEEEEESCCSCEEEEEECSSCTT-EEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEE
T ss_pred ecCCC---EEEEEEchhceEeeeecCCCCcEEEEEECCCCCC-EEEEEeCCCeEEEEEeecCeEEEEecccccccCceeE
Confidence 99888 578888889999999999999999999999 777 6999999999999999999988887 789999999
Q ss_pred EEECCCCCeEEEEEcCCcEEEEecCCCCeeeeee-------------------------ccCCccccEEEEEEecCCCEE
Q 007229 196 IRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFS-------------------------SEDGHHGSIYAVSWSPDGKKV 250 (612)
Q Consensus 196 ~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-------------------------~~~~~~~~v~~i~~~~~~~~l 250 (612)
++|+|++++|++++.||.|++||+++++....+. ....|...|.+++|+ ++++
T Consensus 167 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l 244 (366)
T 3k26_A 167 ADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLI 244 (366)
T ss_dssp EEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEE
T ss_pred EEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEE
Confidence 9999999999999999999999999876554331 112378888889888 6788
Q ss_pred EEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccce
Q 007229 251 LTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNV 330 (612)
Q Consensus 251 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v 330 (612)
++++.||.|++||+ ...... ......+...+
T Consensus 245 ~~~~~d~~i~~wd~----~~~~~~---------------------------------------------~~~~~~~~~~~ 275 (366)
T 3k26_A 245 LSKSCENAIVCWKP----GKMEDD---------------------------------------------IDKIKPSESNV 275 (366)
T ss_dssp EEECSSSEEEEEEE----SSTTCC---------------------------------------------GGGCCTTCCCE
T ss_pred EEEecCCEEEEEeC----CCcccc---------------------------------------------ccccccCCcch
Confidence 88888999999988 332211 11111111111
Q ss_pred eEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceecc
Q 007229 331 STLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDV 410 (612)
Q Consensus 331 ~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~ 410 (612)
..+...
T Consensus 276 ~~~~~~-------------------------------------------------------------------------- 281 (366)
T 3k26_A 276 TILGRF-------------------------------------------------------------------------- 281 (366)
T ss_dssp EEEEEE--------------------------------------------------------------------------
T ss_pred heeccc--------------------------------------------------------------------------
Confidence 000000
Q ss_pred CCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccC--CCeEEEEecCCeEEEEEccCcccc--c
Q 007229 411 GSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPD--GSEAIVGGQNGKLHIYSISGNTLT--E 486 (612)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--~~~l~~~~~dg~v~i~d~~~~~~~--~ 486 (612)
..+...+++++|+|+ +++|++|+.||.|++||+.+++.. .
T Consensus 282 ------------------------------------~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 325 (366)
T 3k26_A 282 ------------------------------------DYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAK 325 (366)
T ss_dssp ------------------------------------ECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCE
T ss_pred ------------------------------------cccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCcccc
Confidence 002234777889998 999999999999999999987642 2
Q ss_pred ceeeccc--cCceEEEEEcCCCcEEEEEcCCCeEEEEecCC
Q 007229 487 EMVLEKH--RGAITVIQYSPDVSMFASADGNREAIVWDRVS 525 (612)
Q Consensus 487 ~~~~~~~--~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~ 525 (612)
...+..| ...|++++|+|++++|++++.||.|++||+.+
T Consensus 326 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 326 CTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp EEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred ceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence 2356666 79999999999999999999999999999853
No 82
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.3e-38 Score=304.47 Aligned_cols=308 Identities=16% Similarity=0.133 Sum_probs=255.0
Q ss_pred CCCCCCceeEEEEccCCCEEEEec-CCEEEEEeCCCCc------eeeEeccCCCceEEEEECCC----C---CEEEEeeC
Q 007229 14 PSTERGRGILISGNPKTDTILYCN-GRSVLIRYLDKPL------HVEFYGEHGYPVTVARYSPN----G---EWIASADV 79 (612)
Q Consensus 14 ~~~~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~------~~~~~~~h~~~v~~~~~s~d----~---~~las~~~ 79 (612)
...|.+.|++++|+| ++|++++ ++.|++||+.+++ .+..+.+|...|++++|+|+ + ++|++++.
T Consensus 12 ~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~ 89 (397)
T 1sq9_A 12 GKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSF 89 (397)
T ss_dssp SSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEET
T ss_pred hhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcC
Confidence 346889999999999 7888887 8999999999988 77888899999999999999 9 99999999
Q ss_pred cCeEEEeecCCCce----eeeeeeec-----CCCeEEEEEC----CCCCE-EEEEeCCCCeeeEEEEEecC------Cce
Q 007229 80 SGSVRIWGTHNGFV----LKNEFKVL-----SGRIDDLQWS----PDGLR-IVACGDGKGKSFVRAFMWDS------GTT 139 (612)
Q Consensus 80 d~~i~iwd~~~~~~----~~~~~~~~-----~~~i~~~~~s----~~~~~-l~~~~~~~~~~~i~i~~~~~------~~~ 139 (612)
||.|++||+.+++. ....+..| ...|.+++|+ |++++ |++++.++ .+.+|+..+ ++.
T Consensus 90 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~ 166 (397)
T 1sq9_A 90 SGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKG---TTYIWKFHPFADESNSLT 166 (397)
T ss_dssp TSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTS---CEEEEEEESSSSHHHHTT
T ss_pred CCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCC---cEEEEeCCccccccccce
Confidence 99999999998873 15567778 5899999999 99999 99999887 578888888 777
Q ss_pred ee-----ee-------ccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccc---c---ccceEEEEECCC
Q 007229 140 VG-----DF-------DGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHRE---H---SNFVNCIRFSPD 201 (612)
Q Consensus 140 ~~-----~~-------~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~---~---~~~v~~~~~s~~ 201 (612)
+. .+ ..|...|.+++|+|++ ++++++.|+.|++||+.+++.+..+.. | ...|.+++|+|+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~ 244 (397)
T 1sq9_A 167 LNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQ 244 (397)
T ss_dssp TCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSS
T ss_pred eeccCcceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCC
Confidence 66 77 4589999999999999 599999999999999999999999988 9 999999999999
Q ss_pred CCeEEEEEcC---CcEEEEecCCCCeeeeeeccCC-------------ccccEEEEEEecCCCEEEEEeCCCcEEEEEee
Q 007229 202 GSKLISVSSD---RKGLIYDGKSGEKIGEFSSEDG-------------HHGSIYAVSWSPDGKKVLTVSADKSAKVWEIL 265 (612)
Q Consensus 202 ~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~-------------~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~ 265 (612)
+++|++++.| +.|++||+.+++.+..+. . |...|.+++|+|++++|++++.||.|++||+
T Consensus 245 ~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~- 320 (397)
T 1sq9_A 245 GSLLAIAHDSNSFGCITLYETEFGERIGSLS---VPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDV- 320 (397)
T ss_dssp TTEEEEEEEETTEEEEEEEETTTCCEEEEEC---BC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEET-
T ss_pred CCEEEEEecCCCCceEEEEECCCCcccceec---cCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEc-
Confidence 9999999999 999999999999888883 4 8999999999999999999999999999999
Q ss_pred cCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCC-----
Q 007229 266 EDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQ----- 340 (612)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----- 340 (612)
.+++.+..+.......... . ............|...|.+++|++...
T Consensus 321 ---~~~~~~~~~~~~~~~~~~~----------------~---------~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~ 372 (397)
T 1sq9_A 321 ---KTKERITTLNMHCDDIEIE----------------E---------DILAVDEHGDSLAEPGVFDVKFLKKGWRSGMG 372 (397)
T ss_dssp ---TTTEEEEEEECCGGGCSSG----------------G---------GCCCBCTTSCBCSSCCEEEEEEECTTTSBSTT
T ss_pred ---CCCceeEEEecccCcccch----------------h---------hhhccccccccccCCceeEEEecccccccccc
Confidence 8888887776211000000 0 000001122344689999999995321
Q ss_pred ----cEEEEEecCCcEEEEEcCCc
Q 007229 341 ----QTILSSSYDGAIIKWIRGVG 360 (612)
Q Consensus 341 ----~~l~~~~~dg~i~~wd~~~~ 360 (612)
.++++++.||.|++|+++++
T Consensus 373 ~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 373 ADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp CTTSCEEEEEETTTEEEEEEEEC-
T ss_pred ccccceEEEecCCCcEEEEEcCCC
Confidence 79999999999999998765
No 83
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.7e-40 Score=311.75 Aligned_cols=202 Identities=13% Similarity=0.165 Sum_probs=171.0
Q ss_pred eccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCc-eeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEE
Q 007229 55 YGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGF-VLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFM 133 (612)
Q Consensus 55 ~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~ 133 (612)
+..|.++|++++|+|++++||+++.|+.|+|||+.++. .....+.+|...|.+++|+|++++|++++.++ .+++|+
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~---~v~vwd 83 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDR---NAYVYE 83 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTS---SEEEC-
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCC---eEEEEE
Confidence 44577899999999999999999999999999999873 36668889999999999999999999999988 467777
Q ss_pred ecCCc---eeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCe---eeecccc-cccceEEEEECCCCCeEE
Q 007229 134 WDSGT---TVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFK---FKLSHRE-HSNFVNCIRFSPDGSKLI 206 (612)
Q Consensus 134 ~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~---~~~~~~~-~~~~v~~~~~s~~~~~l~ 206 (612)
.++++ ....+.+|...|.+++|+|+++ +|++++.|+.|++||+.+++ ....+.+ |...|.+++|+|++++|+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 162 (377)
T 3dwl_C 84 KRPDGTWKQTLVLLRLNRAATFVRWSPNED-KFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLA 162 (377)
T ss_dssp -----CCCCEEECCCCSSCEEEEECCTTSS-CCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEE
T ss_pred cCCCCceeeeeEecccCCceEEEEECCCCC-EEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEE
Confidence 77766 6778889999999999999999 59999999999999999887 3566777 999999999999999999
Q ss_pred EEEcCCcEEEEecCCC------------------CeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEe
Q 007229 207 SVSSDRKGLIYDGKSG------------------EKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 207 ~~~~dg~i~vwd~~~~------------------~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~ 264 (612)
+++.|+.|++||+..+ +.+..+ .|...|.+++|+|++++|++++.||.|++||+
T Consensus 163 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~ 234 (377)
T 3dwl_C 163 AGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY----PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYP 234 (377)
T ss_dssp EEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC----CCSSSEEEEEECTTSSCEEEEETTTEEC-CEE
T ss_pred EEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc----cCCceEEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence 9999999999998632 333333 78999999999999999999999999999999
No 84
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=7.2e-39 Score=307.70 Aligned_cols=359 Identities=13% Similarity=0.122 Sum_probs=249.5
Q ss_pred EEEEEecCCceeeeeccCCceEEEEEEcC-CCCEEEEEeecCCeEEEEeCCCCeeeeccc-------------ccccceE
Q 007229 129 VRAFMWDSGTTVGDFDGHSRRVLSCEFKP-TRPFRIATCGEDFLVNFYEGPPFKFKLSHR-------------EHSNFVN 194 (612)
Q Consensus 129 i~i~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~-------------~~~~~v~ 194 (612)
+++|.++.++....+.+|.+.|.+++|+| +++ +|++++.||.|++||+.+++....+. +|...|.
T Consensus 25 ~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 103 (408)
T 4a11_B 25 RRVLGLELNKDRDVERIHGGGINTLDIEPVEGR-YMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVE 103 (408)
T ss_dssp HHHHTEEECTTEEECCCCSSCEEEEEECTTTCC-EEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEE
T ss_pred ceeeccccCcceeeeeccCCcEEEEEEecCCCC-EEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEE
Confidence 35667777888888999999999999999 888 59999999999999999887665543 5999999
Q ss_pred EEEECC-CCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecC---CCEEEEEeCCCcEEEEEeecCCCC
Q 007229 195 CIRFSP-DGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPD---GKKVLTVSADKSAKVWEILEDGSG 270 (612)
Q Consensus 195 ~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~---~~~l~~~~~dg~i~iw~~~~~~~~ 270 (612)
+++|+| ++++|++++.||.|++||+.+++....+ .+...+.++.|+|. +.++++++.||.|++||+ .+
T Consensus 104 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~----~~ 175 (408)
T 4a11_B 104 TVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVF----NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDL----KS 175 (408)
T ss_dssp EEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEE----ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEES----SS
T ss_pred EEEEccCCCcEEEEEeCCCeEEEeeCCCCccceec----cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeC----CC
Confidence 999999 7789999999999999999999998888 57788999999984 449999999999999998 54
Q ss_pred CeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCC
Q 007229 271 GRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDG 350 (612)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 350 (612)
++.+ ..+.+|...|.+++|++....++++++.||
T Consensus 176 ~~~~----------------------------------------------~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg 209 (408)
T 4a11_B 176 GSCS----------------------------------------------HILQGHRQEILAVSWSPRYDYILATASADS 209 (408)
T ss_dssp SCCC----------------------------------------------EEECCCCSCEEEEEECSSCTTEEEEEETTS
T ss_pred ccee----------------------------------------------eeecCCCCcEEEEEECCCCCcEEEEEcCCC
Confidence 4333 334568889999999964445799999999
Q ss_pred cEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEE
Q 007229 351 AIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVS 430 (612)
Q Consensus 351 ~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (612)
.|++||++........ ++.......
T Consensus 210 ~i~i~d~~~~~~~~~~----------------------------~~~~~~~~~--------------------------- 234 (408)
T 4a11_B 210 RVKLWDVRRASGCLIT----------------------------LDQHNGKKS--------------------------- 234 (408)
T ss_dssp CEEEEETTCSSCCSEE----------------------------CCTTTTCSC---------------------------
T ss_pred cEEEEECCCCCccccc----------------------------ccccccccc---------------------------
Confidence 9999999875421111 000000000
Q ss_pred eeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeec---cccCceEEEEEcCCCc
Q 007229 431 TESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLE---KHRGAITVIQYSPDVS 507 (612)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~---~~~~~i~~~~~s~~~~ 507 (612)
.........+...|.+++|+|++++|++++.||.|++||+.+++........ .....+........+.
T Consensus 235 ---------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (408)
T 4a11_B 235 ---------QAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSS 305 (408)
T ss_dssp ---------CCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSS
T ss_pred ---------eeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCc
Confidence 0000011225567999999999999999999999999999987652221111 1112222233334556
Q ss_pred EEEEEcCCCeEEEEecCCcceeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeecccccCeeeE
Q 007229 508 MFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGV 587 (612)
Q Consensus 508 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~ 587 (612)
.+++++.|+.|++||+.+++.+ ..+.+|...|++++|+|++++|++++.||.|++||+++ . +.+.....+.. ...+
T Consensus 306 ~~~~~~~~~~i~v~d~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~-~-~~~~~~~~~~~-~~~~ 381 (408)
T 4a11_B 306 EFVFVPYGSTIAVYTVYSGEQI-TMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSL-Y-EPVPDDDETTT-KSQL 381 (408)
T ss_dssp CEEEEEETTEEEEEETTTCCEE-EEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC-------------------
T ss_pred eEEEEecCCEEEEEECcCCcce-eeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCC-C-CccCCCCceEe-cccc
Confidence 7777788999999999999887 56778999999999999999999999999999999998 4 44433332221 2222
Q ss_pred EEecCceEEEccCCCeEEEEEec
Q 007229 588 AFMDDFNVVSSGEDACIRVWRLA 610 (612)
Q Consensus 588 ~~~~~~~l~s~~~d~~i~~w~~~ 610 (612)
.......+.+.+.|+.+++|+..
T Consensus 382 ~~~~~~~~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 382 NPAFEDAWSSSDEEGGTSAWSHP 404 (408)
T ss_dssp -----------------------
T ss_pred ccccceeecccCccCceeecCCc
Confidence 22244556778889999999864
No 85
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=2.5e-39 Score=311.61 Aligned_cols=287 Identities=16% Similarity=0.201 Sum_probs=221.8
Q ss_pred CCCceeEEEEcc-CCCEEEEec-CCEEEEEeCCCCceee--EeccCCCceEEEEECC-CCCEEEEeeCcCeEEEeecCCC
Q 007229 17 ERGRGILISGNP-KTDTILYCN-GRSVLIRYLDKPLHVE--FYGEHGYPVTVARYSP-NGEWIASADVSGSVRIWGTHNG 91 (612)
Q Consensus 17 ~~~~v~~~~~s~-d~~~l~~~~-~~~i~i~~~~~~~~~~--~~~~h~~~v~~~~~s~-d~~~las~~~d~~i~iwd~~~~ 91 (612)
+..+|+|++|+| ++++||+|+ +|.|+|||+.+++... .+.+|.+.|++++|+| ++++|++++.||+|++||+.++
T Consensus 118 ~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~ 197 (435)
T 4e54_B 118 FDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGN 197 (435)
T ss_dssp CSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSC
T ss_pred CCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCC
Confidence 566899999999 567899987 8999999998776443 4568999999999998 7899999999999999999876
Q ss_pred ceeeeeeee--cCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecC
Q 007229 92 FVLKNEFKV--LSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGED 169 (612)
Q Consensus 92 ~~~~~~~~~--~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 169 (612)
. +...... +...+.+++|+|++++|++++.++ .+.+|+. .++.+..+.+|...|.+++|+|+++.++++|+.|
T Consensus 198 ~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg---~i~~wd~-~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d 272 (435)
T 4e54_B 198 I-LRVFASSDTINIWFCSLDVSASSRMVVTGDNVG---NVILLNM-DGKELWNLRMHKKKVTHVALNPCCDWFLATASVD 272 (435)
T ss_dssp E-EEEEECCSSCSCCCCCEEEETTTTEEEEECSSS---BEEEEES-SSCBCCCSBCCSSCEEEEEECTTCSSEEEEEETT
T ss_pred c-eeEEeccCCCCccEEEEEECCCCCEEEEEeCCC---cEeeecc-CcceeEEEecccceEEeeeecCCCceEEEEecCc
Confidence 4 3222222 334678999999999999999888 4566665 4567888999999999999999998789999999
Q ss_pred CeEEEEeCCCCeeeec---ccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCcc------ccEEE
Q 007229 170 FLVNFYEGPPFKFKLS---HREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHH------GSIYA 240 (612)
Q Consensus 170 ~~i~~wd~~~~~~~~~---~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~------~~v~~ 240 (612)
+.|++||+.+.+.... ..+|...|.+++|+|+|++|++++.||.|++||+.+++....+. .|. ..+..
T Consensus 273 ~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~ 349 (435)
T 4e54_B 273 QTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLI---PHPHRHFQHLTPIK 349 (435)
T ss_dssp SBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEEC---CCCCCCCSSSCCCB
T ss_pred ceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEe---cccccccccceeEE
Confidence 9999999988765443 35799999999999999999999999999999999988776652 222 12344
Q ss_pred EEEecCCCEEEEEeC------------CCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEE
Q 007229 241 VSWSPDGKKVLTVSA------------DKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGII 308 (612)
Q Consensus 241 i~~~~~~~~l~~~~~------------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 308 (612)
..|+|++..++++.. ++.|++||. .+++.+..+
T Consensus 350 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~----~~g~~~~~l------------------------------- 394 (435)
T 4e54_B 350 AAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDG----NSGKMMCQL------------------------------- 394 (435)
T ss_dssp CEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECS----SSCCEEEEE-------------------------------
T ss_pred EEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEEC----CCCcEEEEE-------------------------------
Confidence 567777777766642 235666666 444444332
Q ss_pred EEEEcCCCCCCceeecCcccceeEEE-EEecCCcEEEEEecCCcEEEEEcCCcee
Q 007229 309 SIFSASNLDKAPLSFSGHVKNVSTLT-ALKISQQTILSSSYDGAIIKWIRGVGYS 362 (612)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~l~~~~~dg~i~~wd~~~~~~ 362 (612)
..+|...|.++. |+ +++.+|++|+ |+.|++|+++.++.
T Consensus 395 --------------~~~~~~~v~s~~~fs-pdg~~lasg~-d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 395 --------------YDPESSGISSLNEFN-PMGDTLASAM-GYHILIWSQQEART 433 (435)
T ss_dssp --------------CCSSCCCCCCEEEEC-TTSSCEEEEC-SSEEEECCCC----
T ss_pred --------------eCCCCCcEEEEEEEC-CCCCEEEEEc-CCcEEEEECCcCee
Confidence 235777777774 55 3377888765 78999999987754
No 86
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=2.1e-38 Score=304.41 Aligned_cols=351 Identities=16% Similarity=0.213 Sum_probs=255.1
Q ss_pred CCEEEEEeCCCCceeeEeccCCCceEEEEECC-CCCEEEEeeCcCeEEEeecCCCceeeeee------------eecCCC
Q 007229 38 GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSP-NGEWIASADVSGSVRIWGTHNGFVLKNEF------------KVLSGR 104 (612)
Q Consensus 38 ~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~-d~~~las~~~d~~i~iwd~~~~~~~~~~~------------~~~~~~ 104 (612)
++.+++|+++.++....+.+|.+.|++++|+| ++++||+++.||.|++||+.+++...... .+|...
T Consensus 22 ~~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (408)
T 4a11_B 22 ESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYS 101 (408)
T ss_dssp HHHHHHHTEEECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSC
T ss_pred cCcceeeccccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCc
Confidence 45677888888888888999999999999999 99999999999999999999876432111 249999
Q ss_pred eEEEEECC-CCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCC--EEEEEeecCCeEEEEeCCCCe
Q 007229 105 IDDLQWSP-DGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRP--FRIATCGEDFLVNFYEGPPFK 181 (612)
Q Consensus 105 i~~~~~s~-~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~l~~~~~d~~i~~wd~~~~~ 181 (612)
|.+++|+| ++++|++++.++ .+++|+.++++.+..+. +...+.++.|+|.+. .++++++.|+.|++||+.+++
T Consensus 102 v~~~~~~~~~~~~l~s~~~d~---~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 177 (408)
T 4a11_B 102 VETVQWYPHDTGMFTSSSFDK---TLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGS 177 (408)
T ss_dssp EEEEEECTTCTTCEEEEETTS---EEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSC
T ss_pred EEEEEEccCCCcEEEEEeCCC---eEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcc
Confidence 99999999 778999999887 57888888888887776 788899999998543 159999999999999999999
Q ss_pred eeecccccccceEEEEECCCCCe-EEEEEcCCcEEEEecCCCCe-eeeee------------ccCCccccEEEEEEecCC
Q 007229 182 FKLSHREHSNFVNCIRFSPDGSK-LISVSSDRKGLIYDGKSGEK-IGEFS------------SEDGHHGSIYAVSWSPDG 247 (612)
Q Consensus 182 ~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~dg~i~vwd~~~~~~-~~~~~------------~~~~~~~~v~~i~~~~~~ 247 (612)
.+..+.+|...|.+++|+|++++ +++++.||.|++||++++.. ...+. ....|...|.+++|+|++
T Consensus 178 ~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 257 (408)
T 4a11_B 178 CSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDG 257 (408)
T ss_dssp CCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTS
T ss_pred eeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCC
Confidence 99999999999999999999984 88999999999999987652 22221 013688999999999999
Q ss_pred CEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCcccc-ceeeeee-eccCCEEEEEEcCCEEEEEEcCCCCCCceeecC
Q 007229 248 KKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAV-EDMLVGC-LWQNDHLITVSLGGIISIFSASNLDKAPLSFSG 325 (612)
Q Consensus 248 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 325 (612)
++|++++.||.|++||+ .+++....+........ ....... ......+++++.++.+++|++.. ......+.+
T Consensus 258 ~~l~~~~~dg~i~vwd~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~-~~~~~~~~~ 332 (408)
T 4a11_B 258 LHLLTVGTDNRMRLWNS----SNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYS-GEQITMLKG 332 (408)
T ss_dssp SEEEEEETTSCEEEEET----TTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTT-CCEEEEECC
T ss_pred CEEEEecCCCeEEEEEC----CCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcC-Ccceeeecc
Confidence 99999999999999999 66665444332221111 1111111 22367788889999999999765 456678889
Q ss_pred cccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEe-eccEEEEecCCCeEEEEecCC
Q 007229 326 HVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAA-VEEVIFTAGFDNKVWRVPLCE 399 (612)
Q Consensus 326 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~-~~~~l~~~~~~~~i~~~~~~~ 399 (612)
|...|.+++|++. +.+|++++.||.|++||+.+.+........... ..+.. ........+.++.+++|+.+.
T Consensus 333 ~~~~v~~~~~s~~-~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~W~~~~ 405 (408)
T 4a11_B 333 HYKTVDCCVFQSN-FQELYSGSRDCNILAWVPSLYEPVPDDDETTTK-SQLNPAFEDAWSSSDEEGGTSAWSHPQ 405 (408)
T ss_dssp CSSCEEEEEEETT-TTEEEEEETTSCEEEEEECC-----------------------------------------
T ss_pred CCCeEEEEEEcCC-CCEEEEECCCCeEEEEeCCCCCccCCCCceEec-cccccccceeecccCccCceeecCCcc
Confidence 9999999999932 789999999999999999998776544322222 22333 445566777889999998653
No 87
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.7e-37 Score=295.83 Aligned_cols=285 Identities=15% Similarity=0.256 Sum_probs=240.3
Q ss_pred ceeEEEEccCCCEEEEecCCEEEEEeCCCCceeeEecc-CCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeee
Q 007229 20 RGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGE-HGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEF 98 (612)
Q Consensus 20 ~v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~~~~-h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~ 98 (612)
.+.+++|++ +.+++.+.++.|++||+.+++....+.. |...|++++|+|++++||+|+.||.|++||+.+++ ....+
T Consensus 95 ~~~~~~~s~-~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~ 172 (401)
T 4aez_A 95 YLNLLDWSN-LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQT-KLRTM 172 (401)
T ss_dssp TCBCEEECT-TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-EEEEE
T ss_pred eEEEEeecC-CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCe-EEEEe
Confidence 355677776 3455555699999999999998877765 89999999999999999999999999999999988 55578
Q ss_pred eecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec-CCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeC
Q 007229 99 KVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD-SGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEG 177 (612)
Q Consensus 99 ~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~ 177 (612)
..|...|.+++| ++++|++++.++ .+.+|+.. .+..+..+.+|...|.+++|+|+++ .+++++.|+.|++||+
T Consensus 173 ~~~~~~v~~~~~--~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~v~iwd~ 246 (401)
T 4aez_A 173 AGHQARVGCLSW--NRHVLSSGSRSG---AIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGL-QLASGGNDNVVQIWDA 246 (401)
T ss_dssp CCCSSCEEEEEE--ETTEEEEEETTS---EEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEET
T ss_pred cCCCCceEEEEE--CCCEEEEEcCCC---CEEEEecccCcceeeEEcCCCCCeeEEEEcCCCC-EEEEEeCCCeEEEccC
Confidence 899999999999 567999999988 56777777 5777889999999999999999999 5999999999999999
Q ss_pred CCCeeeecccccccceEEEEECCCCCeE-EEEE--cCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEe
Q 007229 178 PPFKFKLSHREHSNFVNCIRFSPDGSKL-ISVS--SDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVS 254 (612)
Q Consensus 178 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~ 254 (612)
.+++....+.+|...|.+++|+|++..+ ++++ .|+.|++||+.+++.+..+ .+...+.+++|+|+++++++++
T Consensus 247 ~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~----~~~~~v~~~~~s~~~~~l~~~~ 322 (401)
T 4aez_A 247 RSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTV----DAGSQVTSLIWSPHSKEIMSTH 322 (401)
T ss_dssp TCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEE----ECSSCEEEEEECSSSSEEEEEE
T ss_pred CCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEE----eCCCcEEEEEECCCCCeEEEEe
Confidence 9999999999999999999999977544 5544 6999999999999999888 5778899999999999999954
Q ss_pred --CCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeE
Q 007229 255 --ADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVST 332 (612)
Q Consensus 255 --~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~ 332 (612)
.||.|++|++ .+++..... .+.+|...|.+
T Consensus 323 g~~dg~i~v~~~----~~~~~~~~~--------------------------------------------~~~~h~~~v~~ 354 (401)
T 4aez_A 323 GFPDNNLSIWSY----SSSGLTKQV--------------------------------------------DIPAHDTRVLY 354 (401)
T ss_dssp CTTTCEEEEEEE----ETTEEEEEE--------------------------------------------EEECCSSCCCE
T ss_pred ecCCCcEEEEec----CCccceeEE--------------------------------------------EecCCCCCEEE
Confidence 8999999999 554433322 23468889999
Q ss_pred EEEEecCCcEEEEEecCCcEEEEEcCCceeeee
Q 007229 333 LTALKISQQTILSSSYDGAIIKWIRGVGYSSKL 365 (612)
Q Consensus 333 ~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~ 365 (612)
++|++ ++.++++++.||.|++|++.+++....
T Consensus 355 ~~~s~-dg~~l~s~~~dg~i~iw~~~~~~~~~~ 386 (401)
T 4aez_A 355 SALSP-DGRILSTAASDENLKFWRVYDGDHVKR 386 (401)
T ss_dssp EEECT-TSSEEEEECTTSEEEEEECCC------
T ss_pred EEECC-CCCEEEEEeCCCcEEEEECCCCccccc
Confidence 99983 288999999999999999998776553
No 88
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.5e-38 Score=300.70 Aligned_cols=287 Identities=17% Similarity=0.263 Sum_probs=242.4
Q ss_pred CCCCCceeEEEEccC---CC--EEEEecCCEEEEEeCCCCceeeEecc-----CCCceEEEEECCC----CCEEEEeeCc
Q 007229 15 STERGRGILISGNPK---TD--TILYCNGRSVLIRYLDKPLHVEFYGE-----HGYPVTVARYSPN----GEWIASADVS 80 (612)
Q Consensus 15 ~~~~~~v~~~~~s~d---~~--~l~~~~~~~i~i~~~~~~~~~~~~~~-----h~~~v~~~~~s~d----~~~las~~~d 80 (612)
..|.+.|.+++|+|+ +. ++++++++.|++||+.+++.+..+.. |...|++++|+|+ +++|++|+.|
T Consensus 15 ~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d 94 (366)
T 3k26_A 15 EDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSR 94 (366)
T ss_dssp CTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETT
T ss_pred cCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCC
Confidence 367899999999984 43 55556688999999998887776654 5578999999999 7799999999
Q ss_pred CeEEEeecCCCceeeeeeeecCCCeEEEEECC-CCCEEEEEeCCCCeeeEEEEEecCCceeeee---ccCCceEEEEEEc
Q 007229 81 GSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSP-DGLRIVACGDGKGKSFVRAFMWDSGTTVGDF---DGHSRRVLSCEFK 156 (612)
Q Consensus 81 ~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~---~~~~~~v~~~~~~ 156 (612)
|.|++||+.+++ ....+..|...|.+++|+| ++++|++++.++ .+++|+.++++.+..+ .+|...|.+++|+
T Consensus 95 g~i~v~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 170 (366)
T 3k26_A 95 GIIRIINPITMQ-CIKHYVGHGNAINELKFHPRDPNLLLSVSKDH---ALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 170 (366)
T ss_dssp CEEEEECTTTCC-EEEEEESCCSCEEEEEECSSCTTEEEEEETTS---CEEEEETTTTEEEEEECSTTSCSSCEEEEEEC
T ss_pred CEEEEEEchhce-EeeeecCCCCcEEEEEECCCCCCEEEEEeCCC---eEEEEEeecCeEEEEecccccccCceeEEEEC
Confidence 999999999988 5557888999999999999 999999999988 5788888889988888 7899999999999
Q ss_pred CCCCEEEEEeecCCeEEEEeCCCCeeeecccc----------------------------cccceEEEEECCCCCeEEEE
Q 007229 157 PTRPFRIATCGEDFLVNFYEGPPFKFKLSHRE----------------------------HSNFVNCIRFSPDGSKLISV 208 (612)
Q Consensus 157 ~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~----------------------------~~~~v~~~~~s~~~~~l~~~ 208 (612)
|+++ .+++++.||.|++||+.+++....+.. |...|.+++|+ +++|+++
T Consensus 171 ~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~ 247 (366)
T 3k26_A 171 LLGE-KIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSK 247 (366)
T ss_dssp TTSS-EEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEE
T ss_pred CCCC-EEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEE
Confidence 9999 599999999999999998876655544 99999999999 7799999
Q ss_pred EcCCcEEEEecCCCCe--------------eeeeeccCCccccEEEEEEecC--CCEEEEEeCCCcEEEEEeecCCCCCe
Q 007229 209 SSDRKGLIYDGKSGEK--------------IGEFSSEDGHHGSIYAVSWSPD--GKKVLTVSADKSAKVWEILEDGSGGR 272 (612)
Q Consensus 209 ~~dg~i~vwd~~~~~~--------------~~~~~~~~~~~~~v~~i~~~~~--~~~l~~~~~dg~i~iw~~~~~~~~~~ 272 (612)
+.|+.|++||+.+++. +..+ ..|...|.+++|+|+ +++|++++.||.|++||+ ..++
T Consensus 248 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~----~~~~ 320 (366)
T 3k26_A 248 SCENAIVCWKPGKMEDDIDKIKPSESNVTILGRF---DYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDL----EVED 320 (366)
T ss_dssp CSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEE---ECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEEC----CSSS
T ss_pred ecCCEEEEEeCCCccccccccccCCcchheeccc---cccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEEC----CCCC
Confidence 9999999999988754 3333 478888999999999 999999999999999999 5443
Q ss_pred eEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCc--ccceeEEEEEecCCcEEEEEecCC
Q 007229 273 VIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGH--VKNVSTLTALKISQQTILSSSYDG 350 (612)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~~~~~dg 350 (612)
.... ....+.+| ...|.+++|++ ++++|++++.||
T Consensus 321 ~~~~------------------------------------------~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg 357 (366)
T 3k26_A 321 PHKA------------------------------------------KCTTLTHHKCGAAIRQTSFSR-DSSILIAVCDDA 357 (366)
T ss_dssp GGGC------------------------------------------EEEEECCTTCCSCEEEEEECT-TSSEEEEEETTS
T ss_pred Cccc------------------------------------------cceEEcccccCCceEEEEeCC-CCCeEEEEeCCC
Confidence 2211 01223344 78999999984 288999999999
Q ss_pred cEEEEEcC
Q 007229 351 AIIKWIRG 358 (612)
Q Consensus 351 ~i~~wd~~ 358 (612)
.|++||+.
T Consensus 358 ~i~iwd~~ 365 (366)
T 3k26_A 358 SIWRWDRL 365 (366)
T ss_dssp EEEEEEC-
T ss_pred EEEEEEec
Confidence 99999975
No 89
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=2.2e-37 Score=296.73 Aligned_cols=282 Identities=19% Similarity=0.292 Sum_probs=237.8
Q ss_pred ceeEEEEccCCCEEEEecCCEEEEEeCCCCceeeEec--cCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeee
Q 007229 20 RGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYG--EHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNE 97 (612)
Q Consensus 20 ~v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~~~--~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~ 97 (612)
-.+.++||++ ++||+|.|++|+|||+.+++..+.+. +|...|++++|+|||++||+|+.||+|+|||+.+++ ....
T Consensus 107 y~~~l~wS~~-n~lAvgld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~-~~~~ 184 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK-RLRN 184 (420)
T ss_dssp TCBCEEECTT-SEEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-EEEE
T ss_pred cceeEEECCC-CEEEEEeCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCc-EEEE
Confidence 3567999986 58999999999999999999877654 678889999999999999999999999999999998 5567
Q ss_pred eeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec-CCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEe
Q 007229 98 FKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD-SGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYE 176 (612)
Q Consensus 98 ~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd 176 (612)
+.+|...+.++++ ++..|++++.++ .+.+|+.. ....+..+.+|...+..+.++|++. .+++++.|+.+++|+
T Consensus 185 ~~~h~~~v~~~s~--~~~~l~sgs~d~---~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~-~l~s~~~D~~v~i~~ 258 (420)
T 4gga_A 185 MTSHSARVGSLSW--NSYILSSGSRSG---HIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGR-HLASGGNDNLVNVWP 258 (420)
T ss_dssp ECCCSSCEEEEEE--ETTEEEEEETTS---EEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEE
T ss_pred EeCCCCceEEEee--CCCEEEEEeCCC---ceeEeeecccceeeEEecccccceeeeeecCCCC-eeeeeeccccceEEe
Confidence 8899999998877 567999999888 45666655 4567788999999999999999999 599999999999999
Q ss_pred CCCCee----eecccccccceEEEEECCCCC-eEEEE--EcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCE
Q 007229 177 GPPFKF----KLSHREHSNFVNCIRFSPDGS-KLISV--SSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKK 249 (612)
Q Consensus 177 ~~~~~~----~~~~~~~~~~v~~~~~s~~~~-~l~~~--~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 249 (612)
..+++. +.....|...|.+++|+|++. .++++ +.|++|++||+.+++....+ .+...+.++.|+|+++.
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~----~~~~~v~~~~~~~~~~~ 334 (420)
T 4gga_A 259 SAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV----DAHSQVCSILWSPHYKE 334 (420)
T ss_dssp SSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEE----ECSSCEEEEEEETTTTE
T ss_pred eccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceee----ccccceeeeeecCCCCe
Confidence 887653 344667899999999999765 44443 46999999999999999888 56678999999999999
Q ss_pred EEEEe--CCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcc
Q 007229 250 VLTVS--ADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHV 327 (612)
Q Consensus 250 l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 327 (612)
+++++ .|+.|++||+ .+++++. .+.+|.
T Consensus 335 lv~~sg~~d~~I~iwd~----~~~~~v~----------------------------------------------~l~gH~ 364 (420)
T 4gga_A 335 LISGHGFAQNQLVIWKY----PTMAKVA----------------------------------------------ELKGHT 364 (420)
T ss_dssp EEEEECTTTCCEEEEET----TTCCEEE----------------------------------------------EECCCS
T ss_pred EEEEEecCCCEEEEEEC----CCCcEEE----------------------------------------------EEcCCC
Confidence 88875 6899999999 6655543 455799
Q ss_pred cceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeee
Q 007229 328 KNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSK 364 (612)
Q Consensus 328 ~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~ 364 (612)
..|.+++|++ ++.+|++|+.|++|++||+.......
T Consensus 365 ~~V~~l~~sp-dg~~l~S~s~D~tvriWdv~~~~~~~ 400 (420)
T 4gga_A 365 SRVLSLTMSP-DGATVASAAADETLRLWRCFELDPAR 400 (420)
T ss_dssp SCEEEEEECT-TSSCEEEEETTTEEEEECCSCSSCC-
T ss_pred CCEEEEEEcC-CCCEEEEEecCCeEEEEECCCCCccc
Confidence 9999999983 27899999999999999987655443
No 90
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1.4e-38 Score=291.87 Aligned_cols=247 Identities=18% Similarity=0.251 Sum_probs=207.0
Q ss_pred ccCCCCCCCceeEEEEccCCCEEEEec-CCEEEEEeCCCCc--eeeEeccCCCceEEEEECC--CCCEEEEeeCcCeEEE
Q 007229 11 ACAPSTERGRGILISGNPKTDTILYCN-GRSVLIRYLDKPL--HVEFYGEHGYPVTVARYSP--NGEWIASADVSGSVRI 85 (612)
Q Consensus 11 ~~~~~~~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~--~~~~~~~h~~~v~~~~~s~--d~~~las~~~d~~i~i 85 (612)
......|.+.|.+++|+|+|++||+++ |+.|+|||+.++. .+..+.+|...|.+++|+| ++++||+|+.|++|++
T Consensus 6 ~~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~i 85 (316)
T 3bg1_A 6 NTVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVII 85 (316)
T ss_dssp --------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEE
T ss_pred eeecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEE
Confidence 334456889999999999999999998 8999999998775 4567899999999999986 4899999999999999
Q ss_pred eecCCCce-eeeeeeecCCCeEEEEECCC--CCEEEEEeCCCCeeeEEEEEecCCc---eeeeeccCCceEEEEEEcCCC
Q 007229 86 WGTHNGFV-LKNEFKVLSGRIDDLQWSPD--GLRIVACGDGKGKSFVRAFMWDSGT---TVGDFDGHSRRVLSCEFKPTR 159 (612)
Q Consensus 86 wd~~~~~~-~~~~~~~~~~~i~~~~~s~~--~~~l~~~~~~~~~~~i~i~~~~~~~---~~~~~~~~~~~v~~~~~~~~~ 159 (612)
||+.+++. ....+.+|...|.+++|+|+ +.+|++++.++ .+++|+...+. ....+.+|...|.+++|+|+.
T Consensus 86 Wd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~---~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 162 (316)
T 3bg1_A 86 WREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDG---AISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAV 162 (316)
T ss_dssp ECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSS---CEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCC
T ss_pred EECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCC---CEEEEecCCCCCcceeeeeccccCCcceEEEcccc
Confidence 99998742 34467789999999999998 78999999988 56888877653 245678899999999999983
Q ss_pred -----------------CEEEEEeecCCeEEEEeCCCC---eeeecccccccceEEEEECCCC----CeEEEEEcCCcEE
Q 007229 160 -----------------PFRIATCGEDFLVNFYEGPPF---KFKLSHREHSNFVNCIRFSPDG----SKLISVSSDRKGL 215 (612)
Q Consensus 160 -----------------~~~l~~~~~d~~i~~wd~~~~---~~~~~~~~~~~~v~~~~~s~~~----~~l~~~~~dg~i~ 215 (612)
. +|++|+.|++|++||+... +....+.+|...|.+++|+|++ ++|++++.|++|+
T Consensus 163 ~~~~~~~~~~~~~~~~~~-~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~ 241 (316)
T 3bg1_A 163 VPGSLIDHPSGQKPNYIK-RFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVF 241 (316)
T ss_dssp CC------CCSCCCCCCC-BEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEE
T ss_pred CCccccccccccCccccc-eEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEE
Confidence 4 5999999999999998754 4667789999999999999986 7899999999999
Q ss_pred EEecCCCC---e-eeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEe
Q 007229 216 IYDGKSGE---K-IGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 216 vwd~~~~~---~-~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~ 264 (612)
+|++++.. . ...+ ..|...|.+++|+|++++|++++.||.|++|+.
T Consensus 242 iw~~~~~~~~~~~~~~~---~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~ 291 (316)
T 3bg1_A 242 IWTCDDASSNTWSPKLL---HKFNDVVWHVSWSITANILAVSGGDNKVTLWKE 291 (316)
T ss_dssp EEECSSTTCCCCBCCEE---EECSSCEEEEEECTTTCCEEEEESSSCEEEEEE
T ss_pred EEEccCccccchhhhhh---hcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEE
Confidence 99987632 1 1222 267889999999999999999999999999998
No 91
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=100.00 E-value=1.2e-36 Score=324.52 Aligned_cols=519 Identities=13% Similarity=0.033 Sum_probs=356.6
Q ss_pred CCCCceeEEEEccCCCEEEEecC-------CEEEEEeCCCCceeeEeccCCCce-------EEEEECCCCCEEEEeeCc-
Q 007229 16 TERGRGILISGNPKTDTILYCNG-------RSVLIRYLDKPLHVEFYGEHGYPV-------TVARYSPNGEWIASADVS- 80 (612)
Q Consensus 16 ~~~~~v~~~~~s~d~~~l~~~~~-------~~i~i~~~~~~~~~~~~~~h~~~v-------~~~~~s~d~~~las~~~d- 80 (612)
.+.+.+.+++|||||++||+++. ..|++||+.+++ .+.+..|...+ ..++|||||+++++++.+
T Consensus 50 ~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~-~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~ 128 (1045)
T 1k32_A 50 SNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE-IKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQ 128 (1045)
T ss_dssp CSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE-EEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTS
T ss_pred eCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC-eEEcccCCCcccccccccccccCCCCCEEEEEECCcC
Confidence 35678999999999999999852 389999999887 45688899888 999999999977887754
Q ss_pred -----CeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCC---------eeeEEEEEecCCceeeeeccC
Q 007229 81 -----GSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKG---------KSFVRAFMWDSGTTVGDFDGH 146 (612)
Q Consensus 81 -----~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~---------~~~i~i~~~~~~~~~~~~~~~ 146 (612)
..|.+||+.+++. . .+..+ ....++|+| | .+++++.+.. .....+|....+.....+.+|
T Consensus 129 ~~~~~~~l~~~~~~~g~~-~-~l~~~--~~~~~~~sp-G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~ 202 (1045)
T 1k32_A 129 PFSSMTCLYRVENDGINF-V-PLNLG--PATHILFAD-G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDM 202 (1045)
T ss_dssp SSTTCCEEEEEEGGGTEE-E-ECCSC--SCSEEEEET-T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECC
T ss_pred CCcccceEEEEECCCCCe-E-EecCC--CcceeeeCC-C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCC
Confidence 3588888877752 2 23322 234677999 8 7777642110 012467776655666777999
Q ss_pred CceEEEEEEcCCCCEEEEEeecCCeEEEEeCCC-CeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCee
Q 007229 147 SRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPP-FKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKI 225 (612)
Q Consensus 147 ~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~ 225 (612)
...+.++.|+++ .++++++.++.+++|.+.. +.....+..|. .+...+|+|||++|+++ .++.|++||+...+ +
T Consensus 203 ~~~v~~~~~s~d--~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~~-l 277 (1045)
T 1k32_A 203 STHVSSPVIVGH--RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNPDTEK-I 277 (1045)
T ss_dssp SSCCEEEEEETT--EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECTTTCC-E
T ss_pred CCcccceEEeCC--EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEE-eCCEEEEecCCceE-e
Confidence 999999999998 3678888899999997643 33344455554 46677999999999887 58999999985443 3
Q ss_pred eeeeccC--------CccccEEEEEEe-cCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeecc-
Q 007229 226 GEFSSED--------GHHGSIYAVSWS-PDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQ- 295 (612)
Q Consensus 226 ~~~~~~~--------~~~~~v~~i~~~-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 295 (612)
..+.... .|...+.+++|+ |||+++++++ ++.+.+|++ ..++... +.... ...+..+.|+
T Consensus 278 ~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~----~~~~~~~-~~~~~----~~~~~~~~~sd 347 (1045)
T 1k32_A 278 EKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDV----SGTYVLK-VPEPL----RIRYVRRGGDT 347 (1045)
T ss_dssp EECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECT----TSSBEEE-CSCCS----CEEEEEECSSS
T ss_pred eeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcC----CCCceEE-ccCCC----cceEEeeeEcC
Confidence 3442100 134468899999 9999999887 789999998 5555433 22111 1133344444
Q ss_pred CCEEEEEEcCCEEE-EEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceE
Q 007229 296 NDHLITVSLGGIIS-IFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIK 374 (612)
Q Consensus 296 ~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~ 374 (612)
+..++.++.++.+. +|+..... ...+.+|...+..++|++ +++.+++++.++.|++||+.+++.......+...+.
T Consensus 348 g~~l~~~s~~~~l~~~~d~~~~~--~~~l~~~~~~~~~~~~Sp-DG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~ 424 (1045)
T 1k32_A 348 KVAFIHGTREGDFLGIYDYRTGK--AEKFEENLGNVFAMGVDR-NGKFAVVANDRFEIMTVDLETGKPTVIERSREAMIT 424 (1045)
T ss_dssp EEEEEEEETTEEEEEEEETTTCC--EEECCCCCCSEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCC
T ss_pred CCeEEEEECCCceEEEEECCCCC--ceEecCCccceeeeEECC-CCCEEEEECCCCeEEEEECCCCceEEeccCCCCCcc
Confidence 55677777777888 88876533 233447778899999983 288999999999999999999988777756888888
Q ss_pred EEEe--eccEEEEecCC----------CeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeeccc
Q 007229 375 CLAA--VEEVIFTAGFD----------NKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLK 442 (612)
Q Consensus 375 ~~~~--~~~~l~~~~~~----------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (612)
++++ ++++++.++.+ +.+++||+.++.. ............++++|++..++..........|+...
T Consensus 425 ~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~--~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~ 502 (1045)
T 1k32_A 425 DFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKI--FAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVV 502 (1045)
T ss_dssp CEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEE--EECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSS
T ss_pred ceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcE--EEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhc
Confidence 8888 77788877664 3999999987642 12222233345566777776666555555544454322
Q ss_pred ceeeecccceEEEEEEccCCCeE--EEEecC-CeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEE--------
Q 007229 443 VMSKIDLGFTVTACAIAPDGSEA--IVGGQN-GKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFAS-------- 511 (612)
Q Consensus 443 ~~~~~~~~~~i~~~~~s~~~~~l--~~~~~d-g~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~-------- 511 (612)
.-........+..+.+++++... +....+ -....|++.+. ......+..|.+.+..++++||++++++
T Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~-~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~ 581 (1045)
T 1k32_A 503 LNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDM-YKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFA 581 (1045)
T ss_dssp SCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTG-GGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHH
T ss_pred cccccccCceeEEEEeCCCCCCccccCcCccccccccccccCH-hHceEEcCCCCCChhheEEcCCCeEEEEecccCccc
Confidence 22222233444555555544332 222111 11123444431 1223455667788999999999988875
Q ss_pred -----EcCCCeEEEEecCCcceeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEccC
Q 007229 512 -----ADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGK 568 (612)
Q Consensus 512 -----~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~ 568 (612)
......+.+||+.+++... +. ..+.+++|||||++|++++.+ .+++||+.+
T Consensus 582 ~~~~~~~~~~~l~~~d~~~~~~~~--l~---~~v~~~~~S~DG~~l~~~~~~-~i~~~d~~~ 637 (1045)
T 1k32_A 582 AYYQGAPEKGVLLKYDVKTRKVTE--VK---NNLTDLRLSADRKTVMVRKDD-GKIYTFPLE 637 (1045)
T ss_dssp HHHHCCCCCEEEEEEETTTCCEEE--EE---EEEEEEEECTTSCEEEEEETT-SCEEEEESS
T ss_pred ccccccCCCceEEEEECCCCcEEE--ee---cCcceEEECCCCCEEEEEcCC-cEEEEeCcc
Confidence 1235678899998887642 22 668899999999999999877 699999987
No 92
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=5.3e-37 Score=294.09 Aligned_cols=298 Identities=14% Similarity=0.211 Sum_probs=230.0
Q ss_pred eEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecc--cccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeee
Q 007229 149 RVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSH--REHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIG 226 (612)
Q Consensus 149 ~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~ 226 (612)
....++|++++ +|++|. |++|++||..+++....+ .+|...|++++|+|+|++|++|+.||.|++||+++++.+.
T Consensus 107 y~~~l~wS~~n--~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~ 183 (420)
T 4gga_A 107 YLNLVDWSSGN--VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 183 (420)
T ss_dssp TCBCEEECTTS--EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred cceeEEECCCC--EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEE
Confidence 35678999864 577665 999999999999887664 4678889999999999999999999999999999999988
Q ss_pred eeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCC
Q 007229 227 EFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGG 306 (612)
Q Consensus 227 ~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (612)
.+ .+|...+.+++++ +..+++++.|+.+++||. ...
T Consensus 184 ~~---~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~----~~~----------------------------------- 219 (420)
T 4gga_A 184 NM---TSHSARVGSLSWN--SYILSSGSRSGHIHHHDV----RVA----------------------------------- 219 (420)
T ss_dssp EE---CCCSSCEEEEEEE--TTEEEEEETTSEEEEEET----TSS-----------------------------------
T ss_pred EE---eCCCCceEEEeeC--CCEEEEEeCCCceeEeee----ccc-----------------------------------
Confidence 88 4899999988775 678999999999999998 322
Q ss_pred EEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEe
Q 007229 307 IISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTA 386 (612)
Q Consensus 307 ~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~ 386 (612)
......+.+|...+..+.+.+ ++..+++++.|+.+++|+...++.....
T Consensus 220 ----------~~~~~~~~~h~~~~~~~~~~~-~g~~l~s~~~D~~v~i~~~~~~~~~~~~-------------------- 268 (420)
T 4gga_A 220 ----------EHHVATLSGHSQEVCGLRWAP-DGRHLASGGNDNLVNVWPSAPGEGGWVP-------------------- 268 (420)
T ss_dssp ----------SCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEESSCCSSCSCC--------------------
T ss_pred ----------ceeeEEecccccceeeeeecC-CCCeeeeeeccccceEEeecccccccee--------------------
Confidence 122244567888888888873 2789999999999999998765432110
Q ss_pred cCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCC-eE
Q 007229 387 GFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGS-EA 465 (612)
Q Consensus 387 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l 465 (612)
......+...|.+++|+|++. ++
T Consensus 269 --------------------------------------------------------~~~~~~~~~~V~~~~~~p~~~~~l 292 (420)
T 4gga_A 269 --------------------------------------------------------LQTFTQHQGAVKAVAWCPWQSNVL 292 (420)
T ss_dssp --------------------------------------------------------SEEECCCSSCEEEEEECTTCTTEE
T ss_pred --------------------------------------------------------eeeecccCCceeeeeeCCCcccEE
Confidence 011112445689999999665 44
Q ss_pred EE--EecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEc--CCCeEEEEecCCcceeeeccccccccee
Q 007229 466 IV--GGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASAD--GNREAIVWDRVSKEVKLNNMLFHTARIN 541 (612)
Q Consensus 466 ~~--~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~i~ 541 (612)
++ |+.|+.|++||+.+++. ...+.. ...+.++.|+|+++.+++++ .|+.|+|||+.+++++ ..+.+|.++|+
T Consensus 293 a~~~gs~D~~I~iwd~~t~~~--~~~~~~-~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v-~~l~gH~~~V~ 368 (420)
T 4gga_A 293 ATGGGTSDRHIRIWNVCSGAC--LSAVDA-HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKV-AELKGHTSRVL 368 (420)
T ss_dssp EEEECTTTCEEEEEETTTTEE--EEEEEC-SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEE-EEECCCSSCEE
T ss_pred EEEeecCCCEEEEEeCCcccc--ceeecc-ccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEE-EEEcCCCCCEE
Confidence 44 45799999999999886 444443 45789999999999888765 7899999999999987 56888999999
Q ss_pred EEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeecccccCeee
Q 007229 542 CLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYG 586 (612)
Q Consensus 542 ~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~ 586 (612)
+++|+|||++||||+.|++|+|||+.. . .+......+...+..
T Consensus 369 ~l~~spdg~~l~S~s~D~tvriWdv~~-~-~~~~~~~~~~~~~~~ 411 (420)
T 4gga_A 369 SLTMSPDGATVASAAADETLRLWRCFE-L-DPARRREREKASAAK 411 (420)
T ss_dssp EEEECTTSSCEEEEETTTEEEEECCSC-S-SCC------------
T ss_pred EEEEcCCCCEEEEEecCCeEEEEECCC-C-CccchhhhccCCccc
Confidence 999999999999999999999999986 3 334444444444433
No 93
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=1.6e-36 Score=280.50 Aligned_cols=277 Identities=18% Similarity=0.266 Sum_probs=232.8
Q ss_pred eeEEEEccCCCEEEEecCCEEEEEeCCCCceeeEec--cCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeee
Q 007229 21 GILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYG--EHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEF 98 (612)
Q Consensus 21 v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~~~--~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~ 98 (612)
.++|+||+++ +||++.|++|+|||++++++++.+. +|...|++++|+|++++||+|+.||+|++||+.+++ ....+
T Consensus 28 ~~~l~WS~~~-~lAvg~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~-~~~~~ 105 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK-RLRNM 105 (318)
T ss_dssp CBCEEECTTS-EEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-EEEEE
T ss_pred ceEEEECCCC-EEEEEeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCce-eEEEe
Confidence 4679999987 8999999999999999999887664 678889999999999999999999999999999998 55578
Q ss_pred eecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecC-CceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeC
Q 007229 99 KVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDS-GTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEG 177 (612)
Q Consensus 99 ~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~ 177 (612)
.+|...+.++. +++..+++++.++ .+.++.... ...+..+.+|...+..+.++++++ .+++++.|+.|++||+
T Consensus 106 ~~h~~~~~~~~--~~~~~l~s~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~d~~i~iwd~ 179 (318)
T 4ggc_A 106 TSHSARVGSLS--WNSYILSSGSRSG---HIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGR-HLASGGNDNLVNVWPS 179 (318)
T ss_dssp ECCSSCEEEEE--EETTEEEEEETTS---EEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEES
T ss_pred cCccceEEEee--cCCCEEEEEecCC---ceEeeecCCCceeEEEEcCccCceEEEEEcCCCC-EEEEEecCcceeEEEC
Confidence 88988887655 4667899998887 345555553 466778899999999999999999 5999999999999999
Q ss_pred CCCeee----ecccccccceEEEEECCCCCeE---EEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEE
Q 007229 178 PPFKFK----LSHREHSNFVNCIRFSPDGSKL---ISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKV 250 (612)
Q Consensus 178 ~~~~~~----~~~~~~~~~v~~~~~s~~~~~l---~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l 250 (612)
.+++.. .....+...|.+++++|++..+ ++++.++.|++||.......... .+...+..+.|+|+++.+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~----~~~~~v~~~~~~~~~~~~ 255 (318)
T 4ggc_A 180 APGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV----DAHSQVCSILWSPHYKEL 255 (318)
T ss_dssp SCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEE----ECSSCEEEEEEETTTTEE
T ss_pred CCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccc----cceeeeeeeeecccccce
Confidence 887643 3345678899999999987644 35567899999999998888777 678889999999999988
Q ss_pred EEEe--CCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCccc
Q 007229 251 LTVS--ADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVK 328 (612)
Q Consensus 251 ~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 328 (612)
++++ .|+.|++||+ .+++++. .+.+|..
T Consensus 256 ~~~sg~~d~~i~iwd~----~~~~~~~----------------------------------------------~l~gH~~ 285 (318)
T 4ggc_A 256 ISGHGFAQNQLVIWKY----PTMAKVA----------------------------------------------ELKGHTS 285 (318)
T ss_dssp EEEECTTTCCEEEEET----TTCCEEE----------------------------------------------EECCCSS
T ss_pred EEEEEcCCCEEEEEEC----CCCcEEE----------------------------------------------EEcCCCC
Confidence 8765 7899999999 6665543 3456899
Q ss_pred ceeEEEEEecCCcEEEEEecCCcEEEEEcCCc
Q 007229 329 NVSTLTALKISQQTILSSSYDGAIIKWIRGVG 360 (612)
Q Consensus 329 ~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~ 360 (612)
.|++++|++ ++.+|++++.||+|++||+...
T Consensus 286 ~V~~l~~sp-dg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 286 RVLSLTMSP-DGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp CEEEEEECT-TSSCEEEEETTTEEEEECCSCC
T ss_pred CEEEEEEcC-CCCEEEEEecCCeEEEEECCCC
Confidence 999999983 2789999999999999998654
No 94
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=2.1e-36 Score=275.02 Aligned_cols=254 Identities=17% Similarity=0.217 Sum_probs=209.2
Q ss_pred eEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCc-eeeeeeeecCCCeEEEEECCC--CCEEEEEeCCCCeeeE
Q 007229 53 EFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGF-VLKNEFKVLSGRIDDLQWSPD--GLRIVACGDGKGKSFV 129 (612)
Q Consensus 53 ~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~-~~~~~~~~~~~~i~~~~~s~~--~~~l~~~~~~~~~~~i 129 (612)
..+.+|.+.|++++|+|+|++||+|+.|++|+|||+.+.. .....+.+|.+.|.+++|+|+ +++|++++.|+ .+
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~---~v 79 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG---KV 79 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTT---EE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCC---EE
Confidence 4578999999999999999999999999999999997542 255688999999999999874 89999999998 57
Q ss_pred EEEEecCC--ceeeeeccCCceEEEEEEcCC--CCEEEEEeecCCeEEEEeCCCCee--eecccccccceEEEEECCC--
Q 007229 130 RAFMWDSG--TTVGDFDGHSRRVLSCEFKPT--RPFRIATCGEDFLVNFYEGPPFKF--KLSHREHSNFVNCIRFSPD-- 201 (612)
Q Consensus 130 ~i~~~~~~--~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~~--~~~~~~~~~~v~~~~~s~~-- 201 (612)
++|+.+++ ..+..+.+|...|.+++|+|+ +. +|++++.|+.|++||+++... ...+.+|...|.+++|+|+
T Consensus 80 ~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~-~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~ 158 (297)
T 2pm7_B 80 MIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGP-MLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATI 158 (297)
T ss_dssp EEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-
T ss_pred EEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCc-EEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcc
Confidence 88887766 366778899999999999998 67 699999999999999987632 3457789999999999997
Q ss_pred -----------CCeEEEEEcCCcEEEEecCCCC----eeeeeeccCCccccEEEEEEecCC---CEEEEEeCCCcEEEEE
Q 007229 202 -----------GSKLISVSSDRKGLIYDGKSGE----KIGEFSSEDGHHGSIYAVSWSPDG---KKVLTVSADKSAKVWE 263 (612)
Q Consensus 202 -----------~~~l~~~~~dg~i~vwd~~~~~----~~~~~~~~~~~~~~v~~i~~~~~~---~~l~~~~~dg~i~iw~ 263 (612)
+++|++++.|++|++||+++++ ....+ .+|...|.+++|+|++ ++|++++.|++|++||
T Consensus 159 ~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l---~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd 235 (297)
T 2pm7_B 159 EEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL---EGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWT 235 (297)
T ss_dssp -----------CCEEEEEETTSCEEEEEEETTTTEEEEEEEE---CCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEE
T ss_pred cccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEe---cCCCCceEEEEECCCCCCceEEEEEECCCcEEEEE
Confidence 5799999999999999998876 33344 4899999999999984 8999999999999999
Q ss_pred eecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEE
Q 007229 264 ILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTI 343 (612)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 343 (612)
+ .......... ......|...+.+++|++ ++++|
T Consensus 236 ~----~~~~~~~~~~-----------------------------------------~~~~~~~~~~v~~~~~s~-~g~~l 269 (297)
T 2pm7_B 236 Q----DNEQGPWKKT-----------------------------------------LLKEEKFPDVLWRASWSL-SGNVL 269 (297)
T ss_dssp E----SSTTSCCEEE-----------------------------------------ESSSSCCSSCEEEEEECS-SSCCE
T ss_pred e----CCCCCcccee-----------------------------------------eeecccCCCcEEEEEECC-CCCEE
Confidence 8 3321000000 000134677899999983 27899
Q ss_pred EEEecCCcEEEEEcCC
Q 007229 344 LSSSYDGAIIKWIRGV 359 (612)
Q Consensus 344 ~~~~~dg~i~~wd~~~ 359 (612)
++++.||.|++|+...
T Consensus 270 as~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 270 ALSGGDNKVTLWKENL 285 (297)
T ss_dssp EEEETTSCEEEEEECT
T ss_pred EEEcCCCcEEEEEECC
Confidence 9999999999998763
No 95
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=9.8e-37 Score=296.34 Aligned_cols=199 Identities=17% Similarity=0.287 Sum_probs=167.8
Q ss_pred cCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCce----------eeeeeeecC------------CCeEEEEECCCC
Q 007229 57 EHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFV----------LKNEFKVLS------------GRIDDLQWSPDG 114 (612)
Q Consensus 57 ~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~----------~~~~~~~~~------------~~i~~~~~s~~~ 114 (612)
.|.+.|++++|+|+|++||+|+.||.|+|||+.+++. +...+.+|. ..|.+++|+|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 4788999999999999999999999999999998762 456788898 889999999998
Q ss_pred --CEEEEEeCCCCeeeEEEEEecCCcee---------------------------------------ee-eccCCceEEE
Q 007229 115 --LRIVACGDGKGKSFVRAFMWDSGTTV---------------------------------------GD-FDGHSRRVLS 152 (612)
Q Consensus 115 --~~l~~~~~~~~~~~i~i~~~~~~~~~---------------------------------------~~-~~~~~~~v~~ 152 (612)
.+|++++.++ .+++|+.+.+... .. ..+|...|.+
T Consensus 106 ~~~~l~s~s~d~---~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 182 (447)
T 3dw8_B 106 NAAQFLLSTNDK---TIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINS 182 (447)
T ss_dssp SSSEEEEEECSS---CEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCE
T ss_pred CcceEEEeCCCC---eEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEE
Confidence 7899999888 5778877654332 12 3689999999
Q ss_pred EEEcCCCCEEEEEeecCCeEEEEeCCC-Ceeee-------cccccccceEEEEECCCC-CeEEEEEcCCcEEEEecCCCC
Q 007229 153 CEFKPTRPFRIATCGEDFLVNFYEGPP-FKFKL-------SHREHSNFVNCIRFSPDG-SKLISVSSDRKGLIYDGKSGE 223 (612)
Q Consensus 153 ~~~~~~~~~~l~~~~~d~~i~~wd~~~-~~~~~-------~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~ 223 (612)
++|+|+++ +|++| .|+.|++||+.+ ++... .+.+|...|.+++|+|++ ++|++++.||.|++||+++++
T Consensus 183 ~~~~~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~ 260 (447)
T 3dw8_B 183 ISINSDYE-TYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASA 260 (447)
T ss_dssp EEECTTSS-EEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCS
T ss_pred EEEcCCCC-EEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCc
Confidence 99999999 58888 799999999994 44433 367899999999999998 999999999999999999988
Q ss_pred e----eeeeeccCCccc------------cEEEEEEecCCCEEEEEeCCCcEEEEEe
Q 007229 224 K----IGEFSSEDGHHG------------SIYAVSWSPDGKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 224 ~----~~~~~~~~~~~~------------~v~~i~~~~~~~~l~~~~~dg~i~iw~~ 264 (612)
. ...+ ..|.. .|.+++|+|++++|++++. +.|++||+
T Consensus 261 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~ 313 (447)
T 3dw8_B 261 LCDRHSKLF---EEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDL 313 (447)
T ss_dssp SSCTTCEEE---CCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEET
T ss_pred cccceeeEe---ccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeC
Confidence 6 4555 35554 8999999999999999998 99999998
No 96
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=1.6e-36 Score=287.11 Aligned_cols=295 Identities=16% Similarity=0.184 Sum_probs=236.8
Q ss_pred cCCceeeeeccCCceEEEEEEcCCC---CEEEEEeecCCeEEEEeCCC-Ceee-ecccccccceEEEEECCCCCeEEEEE
Q 007229 135 DSGTTVGDFDGHSRRVLSCEFKPTR---PFRIATCGEDFLVNFYEGPP-FKFK-LSHREHSNFVNCIRFSPDGSKLISVS 209 (612)
Q Consensus 135 ~~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~~~d~~i~~wd~~~-~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~ 209 (612)
...+.+..+.+|.+.|++++|+|++ + +|++|+.||.|++||+.+ +... ..+.+|...|.+++|+|++++|++++
T Consensus 27 ~~~~~~~~~~~h~~~v~~~~~~~~~~~g~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~ 105 (368)
T 3mmy_A 27 NPMKDIEVTSSPDDSIGCLSFSPPTLPGN-FLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTAS 105 (368)
T ss_dssp CTTCCEECSSCCSSCEEEEEECCTTSSSE-EEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEE
T ss_pred CCcceeEeccCCCCceEEEEEcCCCCCce-EEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEc
Confidence 3566788889999999999999994 6 699999999999999987 5444 67889999999999999999999999
Q ss_pred cCCcEEEEecCCCCeeeeeeccCCccccEEEEEE--ecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccce
Q 007229 210 SDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSW--SPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVED 287 (612)
Q Consensus 210 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~--~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (612)
.||.|++||+++++..... .|...|.+++| +|++++|++++.||.|++||+ .+++.+..+...
T Consensus 106 ~dg~v~iwd~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~----~~~~~~~~~~~~------- 170 (368)
T 3mmy_A 106 CDKTAKMWDLSSNQAIQIA----QHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDT----RSSNPMMVLQLP------- 170 (368)
T ss_dssp TTSEEEEEETTTTEEEEEE----ECSSCEEEEEEEECSSCEEEEEEETTSEEEEECS----SCSSCSEEEECS-------
T ss_pred CCCcEEEEEcCCCCceeec----cccCceEEEEEEeCCCCCEEEEccCCCcEEEEEC----CCCcEEEEEecC-------
Confidence 9999999999999888766 79999999999 889999999999999999999 666555444322
Q ss_pred eeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeece
Q 007229 288 MLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEK 367 (612)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~ 367 (612)
..+.++.+. ...+++++.++.+.+|++..........
T Consensus 171 ----------------------------------------~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 207 (368)
T 3mmy_A 171 ----------------------------------------ERCYCADVI---YPMAVVATAERGLIVYQLENQPSEFRRI 207 (368)
T ss_dssp ----------------------------------------SCEEEEEEE---TTEEEEEEGGGCEEEEECSSSCEEEEEC
T ss_pred ----------------------------------------CCceEEEec---CCeeEEEeCCCcEEEEEeccccchhhhc
Confidence 133344443 5678888888899999887643221110
Q ss_pred ecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeee
Q 007229 368 KYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKI 447 (612)
Q Consensus 368 ~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (612)
..
T Consensus 208 ------------------------------------------------------------------------------~~ 209 (368)
T 3mmy_A 208 ------------------------------------------------------------------------------ES 209 (368)
T ss_dssp ------------------------------------------------------------------------------CC
T ss_pred ------------------------------------------------------------------------------cc
Confidence 00
Q ss_pred cccceEEEEEEccCCCe----EEEEecCCeEEEEEccCccc-ccceeeccccC------------ceEEEEEcCCCcEEE
Q 007229 448 DLGFTVTACAIAPDGSE----AIVGGQNGKLHIYSISGNTL-TEEMVLEKHRG------------AITVIQYSPDVSMFA 510 (612)
Q Consensus 448 ~~~~~i~~~~~s~~~~~----l~~~~~dg~v~i~d~~~~~~-~~~~~~~~~~~------------~i~~~~~s~~~~~l~ 510 (612)
.......++++.++... +++++.||.|++|++..... .....+..|.. +|++++|+|++++|+
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 289 (368)
T 3mmy_A 210 PLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLA 289 (368)
T ss_dssp SCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEE
T ss_pred cccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEE
Confidence 01123455555555544 99999999999999987743 33566677765 799999999999999
Q ss_pred EEcCCCeEEEEecCCcceeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEcc
Q 007229 511 SADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIG 567 (612)
Q Consensus 511 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~ 567 (612)
+++.||.|++||+.+++.+ ..+.+|..+|++++|+|+|++|++++.|+..+.|++.
T Consensus 290 s~~~dg~i~iwd~~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~ 345 (368)
T 3mmy_A 290 TVGSDGRFSFWDKDARTKL-KTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFY 345 (368)
T ss_dssp EEETTSCEEEEETTTTEEE-EECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGC
T ss_pred EEccCCeEEEEECCCCcEE-EEecCCCCCceEEEECCCCCeEEEEeccccccccccc
Confidence 9999999999999999887 5677899999999999999999999998865555543
No 97
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=9e-37 Score=285.29 Aligned_cols=285 Identities=12% Similarity=0.048 Sum_probs=232.8
Q ss_pred eeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCe---eeecccccccceEEEEECCCCC-eEEEEEcCCcEEEE
Q 007229 142 DFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFK---FKLSHREHSNFVNCIRFSPDGS-KLISVSSDRKGLIY 217 (612)
Q Consensus 142 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~---~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~vw 217 (612)
...+|.+.|.+++|+|+++ +|++++.|+.|++||+.+++ ....+.+|...|.+++|+|+++ +|++++.||.|++|
T Consensus 6 ~~~~h~~~v~~~~~s~~~~-~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~w 84 (342)
T 1yfq_A 6 IEQAPKDYISDIKIIPSKS-LLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKV 84 (342)
T ss_dssp CSSCCSSCEEEEEEEGGGT-EEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEE
T ss_pred cccCCCCcEEEEEEcCCCC-EEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEE
Confidence 3468999999999999999 59999999999999998876 3444568999999999999999 99999999999999
Q ss_pred ec-CCCCeeeeeeccCC--ccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeec
Q 007229 218 DG-KSGEKIGEFSSEDG--HHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLW 294 (612)
Q Consensus 218 d~-~~~~~~~~~~~~~~--~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (612)
|+ .+++. ..+ .+ |...|.+++|+| ++++++++.|+.|++||+ .+...
T Consensus 85 d~~~~~~~-~~~---~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~----~~~~~--------------------- 134 (342)
T 1yfq_A 85 DLIGSPSF-QAL---TNNEANLGICRICKYG-DDKLIAASWDGLIEVIDP----RNYGD--------------------- 134 (342)
T ss_dssp CSSSSSSE-EEC---BSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECH----HHHTT---------------------
T ss_pred EeccCCce-Eec---cccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcc----ccccc---------------------
Confidence 99 87766 333 26 999999999999 999999999999999998 21000
Q ss_pred cCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceE
Q 007229 295 QNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIK 374 (612)
Q Consensus 295 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~ 374 (612)
......
T Consensus 135 ---------------------------------------------~~~~~~----------------------------- 140 (342)
T 1yfq_A 135 ---------------------------------------------GVIAVK----------------------------- 140 (342)
T ss_dssp ---------------------------------------------BCEEEE-----------------------------
T ss_pred ---------------------------------------------cccccc-----------------------------
Confidence 000000
Q ss_pred EEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEE
Q 007229 375 CLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVT 454 (612)
Q Consensus 375 ~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 454 (612)
.+.+..+.+...+.
T Consensus 141 ------------------------------------------------------------------~~~~~~~~~~~~v~ 154 (342)
T 1yfq_A 141 ------------------------------------------------------------------NLNSNNTKVKNKIF 154 (342)
T ss_dssp ------------------------------------------------------------------ESCSSSSSSCCCEE
T ss_pred ------------------------------------------------------------------CCeeeEEeeCCceE
Confidence 00000111233577
Q ss_pred EEEEccCCCeEEEEecCCeEEEEEccC-cccccceeeccccCceEEEEEcC-CCcEEEEEcCCCeEEEEecCCc------
Q 007229 455 ACAIAPDGSEAIVGGQNGKLHIYSISG-NTLTEEMVLEKHRGAITVIQYSP-DVSMFASADGNREAIVWDRVSK------ 526 (612)
Q Consensus 455 ~~~~s~~~~~l~~~~~dg~v~i~d~~~-~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~d~~i~iwd~~~~------ 526 (612)
+++|+|++ +++++.|+.|++||+.+ +..........|...|.+++|+| +++++++++.||.|++|++...
T Consensus 155 ~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~ 232 (342)
T 1yfq_A 155 TMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNS 232 (342)
T ss_dssp EEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTC
T ss_pred EEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCccccc
Confidence 88888887 88899999999999987 55433445567888999999999 9999999999999999999887
Q ss_pred ceeeeccccccc---------ceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeeccc-ccCeeeEEEecCceEE
Q 007229 527 EVKLNNMLFHTA---------RINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAH-LGGVYGVAFMDDFNVV 596 (612)
Q Consensus 527 ~~~~~~~~~~~~---------~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~l~ 596 (612)
+.. ..+..|.. .|++++|+|++++|++++.||.|++||+.+ + +++..+.+| ...|.+++ .++++|+
T Consensus 233 ~~~-~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~-~-~~~~~~~~~h~~~v~~~~-~~~~~l~ 308 (342)
T 1yfq_A 233 SKR-FAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQT-R-KKIKNFAKFNEDSVVKIA-CSDNILC 308 (342)
T ss_dssp TTC-EEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTT-T-EEEEECCCCSSSEEEEEE-ECSSEEE
T ss_pred ccc-eeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCcc-H-hHhhhhhcccCCCceEec-CCCCeEE
Confidence 433 44555654 999999999999999999999999999998 6 778889998 99999999 8888999
Q ss_pred EccCCCe
Q 007229 597 SSGEDAC 603 (612)
Q Consensus 597 s~~~d~~ 603 (612)
+++.||.
T Consensus 309 s~s~Dg~ 315 (342)
T 1yfq_A 309 LATSDDT 315 (342)
T ss_dssp EEEECTH
T ss_pred EEecCCc
Confidence 9999998
No 98
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=8.3e-37 Score=280.16 Aligned_cols=251 Identities=16% Similarity=0.223 Sum_probs=203.8
Q ss_pred EeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCce-eeeeeeecCCCeEEEEECC--CCCEEEEEeCCCCeeeEE
Q 007229 54 FYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFV-LKNEFKVLSGRIDDLQWSP--DGLRIVACGDGKGKSFVR 130 (612)
Q Consensus 54 ~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~-~~~~~~~~~~~i~~~~~s~--~~~~l~~~~~~~~~~~i~ 130 (612)
.+.+|.+.|++++|+|+|++||+|+.|++|+|||+.+++. ....+.+|.+.|.+++|+| ++++|++++.++ .++
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~---~v~ 84 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDR---KVI 84 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTS---CEE
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCC---EEE
Confidence 4679999999999999999999999999999999988753 4567889999999999986 489999999998 467
Q ss_pred EEEecCC--ceeeeeccCCceEEEEEEcCC--CCEEEEEeecCCeEEEEeCCCCe---eeecccccccceEEEEECCC--
Q 007229 131 AFMWDSG--TTVGDFDGHSRRVLSCEFKPT--RPFRIATCGEDFLVNFYEGPPFK---FKLSHREHSNFVNCIRFSPD-- 201 (612)
Q Consensus 131 i~~~~~~--~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~---~~~~~~~~~~~v~~~~~s~~-- 201 (612)
+|+..++ +.+..+.+|...|.+++|+|+ +. +|++|+.|++|++||+..+. ....+.+|...|.+++|+|+
T Consensus 85 iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~-~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 163 (316)
T 3bg1_A 85 IWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGL-ILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVV 163 (316)
T ss_dssp EECCSSSCCCEEEEECCCSSCCCEEEECCTTTCS-CEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCC
T ss_pred EEECCCCcceEEEEccCCCCceEEEEECCCCCCc-EEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccC
Confidence 7777665 467788899999999999998 66 59999999999999988753 24557789999999999997
Q ss_pred ---------------CCeEEEEEcCCcEEEEecCCCC---eeeeeeccCCccccEEEEEEecCC----CEEEEEeCCCcE
Q 007229 202 ---------------GSKLISVSSDRKGLIYDGKSGE---KIGEFSSEDGHHGSIYAVSWSPDG----KKVLTVSADKSA 259 (612)
Q Consensus 202 ---------------~~~l~~~~~dg~i~vwd~~~~~---~~~~~~~~~~~~~~v~~i~~~~~~----~~l~~~~~dg~i 259 (612)
+++|++++.|+.|++||++.+. ....+ .+|...|.+++|+|++ ++|++++.||+|
T Consensus 164 ~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l---~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v 240 (316)
T 3bg1_A 164 PGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKL---EAHSDWVRDVAWAPSIGLPTSTIASCSQDGRV 240 (316)
T ss_dssp C------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECC---BCCSSCEEEEECCCCSSCSCCEEEEEETTCEE
T ss_pred CccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeec---ccCCCceEEEEecCCCCCCCceEEEEcCCCeE
Confidence 4789999999999999997653 33344 5899999999999986 789999999999
Q ss_pred EEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecC
Q 007229 260 KVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKIS 339 (612)
Q Consensus 260 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 339 (612)
++|++ ...... ......+..|...|.+++|++.
T Consensus 241 ~iw~~----~~~~~~------------------------------------------~~~~~~~~~~~~~v~~v~~sp~- 273 (316)
T 3bg1_A 241 FIWTC----DDASSN------------------------------------------TWSPKLLHKFNDVVWHVSWSIT- 273 (316)
T ss_dssp EEEEC----SSTTCC------------------------------------------CCBCCEEEECSSCEEEEEECTT-
T ss_pred EEEEc----cCcccc------------------------------------------chhhhhhhcCCCcEEEEEEcCC-
Confidence 99998 331100 0001223457788999999832
Q ss_pred CcEEEEEecCCcEEEEEcC
Q 007229 340 QQTILSSSYDGAIIKWIRG 358 (612)
Q Consensus 340 ~~~l~~~~~dg~i~~wd~~ 358 (612)
+.+|++++.|+.|++|+..
T Consensus 274 g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 274 ANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp TCCEEEEESSSCEEEEEEC
T ss_pred CCEEEEEcCCCeEEEEEEC
Confidence 7899999999999999975
No 99
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=1.4e-35 Score=274.15 Aligned_cols=283 Identities=17% Similarity=0.261 Sum_probs=234.6
Q ss_pred eEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCe
Q 007229 193 VNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGR 272 (612)
Q Consensus 193 v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 272 (612)
.++|+||+++ +|++| .|++|+|||+++++.+..+.. .+|...|.+++|+|++++|++|+.||.|++|++ .+++
T Consensus 28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~-~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~----~~~~ 100 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQM-EQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDV----QQQK 100 (318)
T ss_dssp CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEEC-CSTTCCEEEEEECTTSSEEEEEETTSEEEEEET----TTTE
T ss_pred ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEe-cCCCCeEEEEEECCCCCEEEEEECCCcEEEeec----CCce
Confidence 4679999886 66655 599999999999998887743 378889999999999999999999999999999 8999
Q ss_pred eEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcE
Q 007229 273 VIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAI 352 (612)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 352 (612)
.+..+..+. ..+......+..+++++.++.+.+|+..........+.+|...+..+.+... +..+++++.||.|
T Consensus 101 ~~~~~~~h~-----~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~s~~~d~~i 174 (318)
T 4ggc_A 101 RLRNMTSHS-----ARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPD-GRHLASGGNDNLV 174 (318)
T ss_dssp EEEEEECCS-----SCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTT-SSEEEEEETTSCE
T ss_pred eEEEecCcc-----ceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCC-CCEEEEEecCcce
Confidence 988887654 3455666778999999999999999988888888889999999999988832 7899999999999
Q ss_pred EEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEee
Q 007229 353 IKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTE 432 (612)
Q Consensus 353 ~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (612)
++||+.+++......
T Consensus 175 ~iwd~~~~~~~~~~~----------------------------------------------------------------- 189 (318)
T 4ggc_A 175 NVWPSAPGEGGWVPL----------------------------------------------------------------- 189 (318)
T ss_dssp EEEESSCBTTBSCCS-----------------------------------------------------------------
T ss_pred eEEECCCCcccccce-----------------------------------------------------------------
Confidence 999987654322111
Q ss_pred ccEEEeecccceeeecccceEEEEEEccCCCeE---EEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEE
Q 007229 433 SGVILLDSLKVMSKIDLGFTVTACAIAPDGSEA---IVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMF 509 (612)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l---~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 509 (612)
.....+...+.+++++|++..+ ++++.++.|++||...... .....+...+..+.|+|+++.+
T Consensus 190 -----------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~---~~~~~~~~~v~~~~~~~~~~~~ 255 (318)
T 4ggc_A 190 -----------QTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC---LSAVDAHSQVCSILWSPHYKEL 255 (318)
T ss_dssp -----------EEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCE---EEEEECSSCEEEEEEETTTTEE
T ss_pred -----------eeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccc---cccccceeeeeeeeecccccce
Confidence 0111133467888898876644 4567889999999987765 3445577889999999999888
Q ss_pred EEEc--CCCeEEEEecCCcceeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEccC
Q 007229 510 ASAD--GNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGK 568 (612)
Q Consensus 510 ~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~ 568 (612)
++++ .|+.|++||+.+++++ ..+.+|.++|++++|+|||++||+|+.||+|+|||+.+
T Consensus 256 ~~~sg~~d~~i~iwd~~~~~~~-~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 256 ISGHGFAQNQLVIWKYPTMAKV-AELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 315 (318)
T ss_dssp EEEECTTTCCEEEEETTTCCEE-EEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred EEEEEcCCCEEEEEECCCCcEE-EEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 7654 7999999999999987 56888999999999999999999999999999999976
No 100
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=4.2e-36 Score=291.92 Aligned_cols=314 Identities=10% Similarity=0.133 Sum_probs=233.5
Q ss_pred CCCCCceeEEEEccCCCEEEEec-CCEEEEEeCCCCc-----------eeeEeccCC------------CceEEEEECCC
Q 007229 15 STERGRGILISGNPKTDTILYCN-GRSVLIRYLDKPL-----------HVEFYGEHG------------YPVTVARYSPN 70 (612)
Q Consensus 15 ~~~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~-----------~~~~~~~h~------------~~v~~~~~s~d 70 (612)
..+.+.|++++|+|+|++||+++ ++.|+|||+.+++ ....+.+|. ..|++++|+|+
T Consensus 25 ~~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~ 104 (447)
T 3dw8_B 25 VAEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQ 104 (447)
T ss_dssp CCGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCC
T ss_pred ccccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCC
Confidence 34678999999999999999998 8999999999877 477788998 88999999999
Q ss_pred C--CEEEEeeCcCeEEEeecCCCcee---------------------------------------eeeeeecCCCeEEEE
Q 007229 71 G--EWIASADVSGSVRIWGTHNGFVL---------------------------------------KNEFKVLSGRIDDLQ 109 (612)
Q Consensus 71 ~--~~las~~~d~~i~iwd~~~~~~~---------------------------------------~~~~~~~~~~i~~~~ 109 (612)
+ .+|++++.|++|++||+.++... .....+|...|.+++
T Consensus 105 ~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 184 (447)
T 3dw8_B 105 KNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS 184 (447)
T ss_dssp CSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE
T ss_pred CCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE
Confidence 8 89999999999999999874421 012357999999999
Q ss_pred ECCCCCEEEEEeCCCCeeeEEEEEec-CCceee-------eeccCCceEEEEEEcCCC-CEEEEEeecCCeEEEEeCCCC
Q 007229 110 WSPDGLRIVACGDGKGKSFVRAFMWD-SGTTVG-------DFDGHSRRVLSCEFKPTR-PFRIATCGEDFLVNFYEGPPF 180 (612)
Q Consensus 110 ~s~~~~~l~~~~~~~~~~~i~i~~~~-~~~~~~-------~~~~~~~~v~~~~~~~~~-~~~l~~~~~d~~i~~wd~~~~ 180 (612)
|+|++++|+++ .++ .+++|+.+ .++.+. .+.+|...|.+++|+|++ . ++++|+.||.|++||+.++
T Consensus 185 ~~~~~~~l~s~-~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-~l~s~~~dg~i~iwd~~~~ 259 (447)
T 3dw8_B 185 INSDYETYLSA-DDL---RINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCN-TFVYSSSKGTIRLCDMRAS 259 (447)
T ss_dssp ECTTSSEEEEE-CSS---EEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTT-EEEEEETTSCEEEEETTTC
T ss_pred EcCCCCEEEEe-CCC---eEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCc-EEEEEeCCCeEEEEECcCC
Confidence 99999999998 555 56777776 344444 367899999999999998 6 6999999999999999998
Q ss_pred ee----eeccccccc------------ceEEEEECCCCCeEEEEEcCCcEEEEecCC-CCeeeeeeccCCcccc------
Q 007229 181 KF----KLSHREHSN------------FVNCIRFSPDGSKLISVSSDRKGLIYDGKS-GEKIGEFSSEDGHHGS------ 237 (612)
Q Consensus 181 ~~----~~~~~~~~~------------~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~------ 237 (612)
+. ...+.+|.. .|.+++|+|++++|++++. +.|++||+++ ++.+..+. .|...
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~---~~~~~~~~l~~ 335 (447)
T 3dw8_B 260 ALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQ---VHEYLRSKLCS 335 (447)
T ss_dssp SSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEE---SCGGGTTTHHH
T ss_pred ccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceee---ccccccccccc
Confidence 86 666777776 8999999999999999998 9999999997 77777773 44321
Q ss_pred ---------EEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEE
Q 007229 238 ---------IYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGII 308 (612)
Q Consensus 238 ---------v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 308 (612)
+..++|+|++++|++++.||.|++||+ .+++.+. +........... ......+..++.
T Consensus 336 ~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~----~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~---- 402 (447)
T 3dw8_B 336 LYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDR----NTKRDIT-LEASRENNKPRT----VLKPRKVCASGK---- 402 (447)
T ss_dssp HHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEET----TTCCEEE-EECCSTTCCTTC----BCCCCCEECSSC----
T ss_pred cccccccccceEEEECCCCCEEEEeccCCEEEEEEc----CCCccee-eeeccccccccc----ccCCccccccCC----
Confidence 334999999999999999999999999 7766653 222211000000 000111111100
Q ss_pred EEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEc
Q 007229 309 SIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIR 357 (612)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~ 357 (612)
............+...+..++|++. +.+|++++.++ +++|..
T Consensus 403 -----~~~~~~~~~~~~~~~~i~~~~~~p~-~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 403 -----RKKDEISVDSLDFNKKILHTAWHPK-ENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp -----CCTTCEEGGGCCTTSCCCEEEECSS-SSEEEEECSSC-EEEEEC
T ss_pred -----cccccccccccccCCceeEEEECCC-CCEEEEEecce-eeeecc
Confidence 0001111112235668899999942 77888887765 777754
No 101
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=7.8e-36 Score=287.60 Aligned_cols=285 Identities=17% Similarity=0.249 Sum_probs=237.0
Q ss_pred CCCceeEEEEccCCCEEEEec-CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceee
Q 007229 17 ERGRGILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLK 95 (612)
Q Consensus 17 ~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~ 95 (612)
+...|.++++ |+++|++++ ++.|++||+.+++....+.+|...|++++| ++++|++|+.||.|++||+.+++ ..
T Consensus 132 ~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~-~~ 206 (435)
T 1p22_A 132 TSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGE-ML 206 (435)
T ss_dssp SCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCC-EE
T ss_pred CCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCc-EE
Confidence 4456777766 899999988 899999999999999999999999999999 88899999999999999999998 55
Q ss_pred eeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCcee---eeeccCCceEEEEEEcCCCCEEEEEeecCCeE
Q 007229 96 NEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTV---GDFDGHSRRVLSCEFKPTRPFRIATCGEDFLV 172 (612)
Q Consensus 96 ~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i 172 (612)
..+..|...|.+++|++ ..+++++.++ .+.+|+..+++.. ..+.+|...|.+++| +++ .+++|+.||.|
T Consensus 207 ~~~~~h~~~v~~l~~~~--~~l~s~s~dg---~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~-~l~s~~~dg~i 278 (435)
T 1p22_A 207 NTLIHHCEAVLHLRFNN--GMMVTCSKDR---SIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDK-YIVSASGDRTI 278 (435)
T ss_dssp EEECCCCSCEEEEECCT--TEEEEEETTS---CEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETT-EEEEEETTSEE
T ss_pred EEEcCCCCcEEEEEEcC--CEEEEeeCCC---cEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCC-EEEEEeCCCeE
Confidence 67889999999999974 5899999888 5788888776655 678899999999999 555 69999999999
Q ss_pred EEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEE
Q 007229 173 NFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLT 252 (612)
Q Consensus 173 ~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~ 252 (612)
++||+.+++.+..+.+|...|.+++|+ ++++++++.||.|++||+++++.+..+ .+|...|.+++| ++++|++
T Consensus 279 ~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~---~~h~~~v~~~~~--~~~~l~s 351 (435)
T 1p22_A 279 KVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVL---EGHEELVRCIRF--DNKRIVS 351 (435)
T ss_dssp EEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEE---CCCSSCEEEEEC--CSSEEEE
T ss_pred EEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEE---eCCcCcEEEEEe--cCCEEEE
Confidence 999999999999999999999999994 789999999999999999999999888 479999999999 7889999
Q ss_pred EeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeE
Q 007229 253 VSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVST 332 (612)
Q Consensus 253 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~ 332 (612)
++.||.|++||+ ..+..... .........+.+|...|.+
T Consensus 352 g~~dg~i~vwd~----~~~~~~~~-------------------------------------~~~~~~~~~~~~h~~~v~~ 390 (435)
T 1p22_A 352 GAYDGKIKVWDL----VAALDPRA-------------------------------------PAGTLCLRTLVEHSGRVFR 390 (435)
T ss_dssp EETTSCEEEEEH----HHHTSTTS-------------------------------------CTTTTEEEEECCCSSCCCC
T ss_pred EeCCCcEEEEEC----CCCCCccc-------------------------------------cccchheeeccCCCCCeEE
Confidence 999999999998 32220000 0011123456679999999
Q ss_pred EEEEecCCcEEEEEecCCcEEEEEcCCceeeee
Q 007229 333 LTALKISQQTILSSSYDGAIIKWIRGVGYSSKL 365 (612)
Q Consensus 333 ~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~ 365 (612)
+++ + +..+++++.||.|++||+.+......
T Consensus 391 l~~-~--~~~l~s~s~Dg~i~iwd~~~~~~~~~ 420 (435)
T 1p22_A 391 LQF-D--EFQIVSSSHDDTILIWDFLNDPAAQA 420 (435)
T ss_dssp EEE-C--SSCEEECCSSSEEEEEC---------
T ss_pred EEe-C--CCEEEEEeCCCEEEEEECCCCCCccc
Confidence 998 3 78899999999999999987665443
No 102
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=1.2e-35 Score=277.73 Aligned_cols=277 Identities=12% Similarity=0.094 Sum_probs=233.9
Q ss_pred CCCCCCceeEEEEccCCCEEEEec-CCEEEEEeCCCCc---eeeEeccCCCceEEEEECCCCC-EEEEeeCcCeEEEeec
Q 007229 14 PSTERGRGILISGNPKTDTILYCN-GRSVLIRYLDKPL---HVEFYGEHGYPVTVARYSPNGE-WIASADVSGSVRIWGT 88 (612)
Q Consensus 14 ~~~~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~---~~~~~~~h~~~v~~~~~s~d~~-~las~~~d~~i~iwd~ 88 (612)
+..|.+.|.+++|+|++++|++++ ++.|++||+.+++ ....+.+|...|++++|+|+++ +|++++.||.|++||+
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~ 86 (342)
T 1yfq_A 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDL 86 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECS
T ss_pred ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEe
Confidence 346788999999999999999987 8999999999877 3445668999999999999999 9999999999999999
Q ss_pred -CCCceeeeeeee--cCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecC---------CceeeeeccCCceEEEEEEc
Q 007229 89 -HNGFVLKNEFKV--LSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDS---------GTTVGDFDGHSRRVLSCEFK 156 (612)
Q Consensus 89 -~~~~~~~~~~~~--~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~---------~~~~~~~~~~~~~v~~~~~~ 156 (612)
.+++. ..+.. |...|.+++|+| +++|++++.++ .+++|+..+ ++++..+. |...|.+++|+
T Consensus 87 ~~~~~~--~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~ 159 (342)
T 1yfq_A 87 IGSPSF--QALTNNEANLGICRICKYG-DDKLIAASWDG---LIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTN 159 (342)
T ss_dssp SSSSSE--EECBSCCCCSCEEEEEEET-TTEEEEEETTS---EEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEEC
T ss_pred ccCCce--EeccccCCCCceEEEEeCC-CCEEEEEcCCC---eEEEEcccccccccccccCCeeeEEe-eCCceEEEEec
Confidence 88763 56777 999999999999 99999999988 567777666 77777777 99999999999
Q ss_pred CCCCEEEEEeecCCeEEEEeCCC-Cee--eecccccccceEEEEECC-CCCeEEEEEcCCcEEEEecCCC------Ceee
Q 007229 157 PTRPFRIATCGEDFLVNFYEGPP-FKF--KLSHREHSNFVNCIRFSP-DGSKLISVSSDRKGLIYDGKSG------EKIG 226 (612)
Q Consensus 157 ~~~~~~l~~~~~d~~i~~wd~~~-~~~--~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~------~~~~ 226 (612)
|++ +++++.|+.|++||+.+ +.. ......|...+.+++|+| +++++++++.||.+++|+++.. +...
T Consensus 160 ~~~---l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~ 236 (342)
T 1yfq_A 160 SSR---LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRF 236 (342)
T ss_dssp SSE---EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCE
T ss_pred CCc---EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccce
Confidence 985 89999999999999988 543 333456888999999999 9999999999999999999887 6666
Q ss_pred eeeccCCc---------cccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCC
Q 007229 227 EFSSEDGH---------HGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQND 297 (612)
Q Consensus 227 ~~~~~~~~---------~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (612)
.+. .| ...|.+++|+|++++|++++.||.|++||+ .+++.+..+
T Consensus 237 ~~~---~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~----~~~~~~~~~-------------------- 289 (342)
T 1yfq_A 237 AFR---CHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNL----QTRKKIKNF-------------------- 289 (342)
T ss_dssp EEE---CCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEET----TTTEEEEEC--------------------
T ss_pred eee---cccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcC----ccHhHhhhh--------------------
Confidence 653 44 349999999999999999999999999999 666665443
Q ss_pred EEEEEEcCCEEEEEEcCCCCCCceeecCc-ccceeEEEEEecCCcEEEEEecCCc-EEEEE
Q 007229 298 HLITVSLGGIISIFSASNLDKAPLSFSGH-VKNVSTLTALKISQQTILSSSYDGA-IIKWI 356 (612)
Q Consensus 298 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~dg~-i~~wd 356 (612)
.+| ...|.+++ +++.++++++.||. .+.+.
T Consensus 290 --------------------------~~~h~~~v~~~~---~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 290 --------------------------AKFNEDSVVKIA---CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp --------------------------CCCSSSEEEEEE---ECSSEEEEEEECTHHHHCSS
T ss_pred --------------------------hcccCCCceEec---CCCCeEEEEecCCccccccc
Confidence 345 77788887 33888999999988 54444
No 103
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=1.9e-35 Score=279.62 Aligned_cols=313 Identities=15% Similarity=0.181 Sum_probs=243.5
Q ss_pred EEeCCCCceeeEeccCCCceEEEEECCC---CCEEEEeeCcCeEEEeecCC-CceeeeeeeecCCCeEEEEECCCCCEEE
Q 007229 43 IRYLDKPLHVEFYGEHGYPVTVARYSPN---GEWIASADVSGSVRIWGTHN-GFVLKNEFKVLSGRIDDLQWSPDGLRIV 118 (612)
Q Consensus 43 i~~~~~~~~~~~~~~h~~~v~~~~~s~d---~~~las~~~d~~i~iwd~~~-~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 118 (612)
.++....+.+..+.+|.+.|++++|+|+ |++||+|+.||.|+|||+.+ +..+...+.+|...|.+++|+|++++|+
T Consensus 23 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 102 (368)
T 3mmy_A 23 TDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVF 102 (368)
T ss_dssp CCSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEE
T ss_pred cCCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEE
Confidence 3455666778889999999999999999 69999999999999999998 5545578899999999999999999999
Q ss_pred EEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEE--cCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEE
Q 007229 119 ACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEF--KPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCI 196 (612)
Q Consensus 119 ~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~ 196 (612)
+++.++ .+++|+.++++.+. +.+|...|.+++| +|++. ++++++.||.|++||+.+++.+..+..+. .+.++
T Consensus 103 s~~~dg---~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~ 176 (368)
T 3mmy_A 103 TASCDK---TAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYS-CVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCA 176 (368)
T ss_dssp EEETTS---EEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCE-EEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEE
T ss_pred EEcCCC---cEEEEEcCCCCcee-eccccCceEEEEEEeCCCCC-EEEEccCCCcEEEEECCCCcEEEEEecCC-CceEE
Confidence 999988 57788877777665 6679999999999 88888 59999999999999999999888887664 56676
Q ss_pred EECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCE----EEEEeCCCcEEEEEeecCCCCCe
Q 007229 197 RFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKK----VLTVSADKSAKVWEILEDGSGGR 272 (612)
Q Consensus 197 ~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~----l~~~~~dg~i~iw~~~~~~~~~~ 272 (612)
.+. ...+++++.++.+++|++.......... ...+...+..+++.++... +++++.||.+++|++ ....
T Consensus 177 ~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~----~~~~ 249 (368)
T 3mmy_A 177 DVI--YPMAVVATAERGLIVYQLENQPSEFRRI-ESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYI----NPPN 249 (368)
T ss_dssp EEE--TTEEEEEEGGGCEEEEECSSSCEEEEEC-CCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEES----SCSC
T ss_pred Eec--CCeeEEEeCCCcEEEEEeccccchhhhc-cccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEec----CCCC
Confidence 666 4578889999999999998766544332 1244556667777665554 888889999999998 3321
Q ss_pred eEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcE
Q 007229 273 VIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAI 352 (612)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 352 (612)
.. .....+.+|......
T Consensus 250 ~~-------------------------------------------~~~~~~~~~~~~~~~-------------------- 266 (368)
T 3mmy_A 250 PA-------------------------------------------KDNFTFKCHRSNGTN-------------------- 266 (368)
T ss_dssp HH-------------------------------------------HHSEEEECSEEC-----------------------
T ss_pred cc-------------------------------------------ccceeeeeeeccccc--------------------
Confidence 10 000111111100000
Q ss_pred EEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEee
Q 007229 353 IKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTE 432 (612)
Q Consensus 353 ~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (612)
T Consensus 267 -------------------------------------------------------------------------------- 266 (368)
T 3mmy_A 267 -------------------------------------------------------------------------------- 266 (368)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEE
Q 007229 433 SGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASA 512 (612)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 512 (612)
.....+...|++++|+|++++|++++.||.|++||+.+++. ...+..|..+|++++|+|++++|+++
T Consensus 267 -----------~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~g~~l~~~ 333 (368)
T 3mmy_A 267 -----------TSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTK--LKTSEQLDQPISACCFNHNGNIFAYA 333 (368)
T ss_dssp ------------CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEE--EEECCCCSSCEEEEEECTTSSCEEEE
T ss_pred -----------ccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcE--EEEecCCCCCceEEEECCCCCeEEEE
Confidence 00001223589999999999999999999999999998876 67788999999999999999999999
Q ss_pred cCCCeEEEEecC
Q 007229 513 DGNREAIVWDRV 524 (612)
Q Consensus 513 ~~d~~i~iwd~~ 524 (612)
+.|+..+.|++.
T Consensus 334 s~d~~~~~~~~~ 345 (368)
T 3mmy_A 334 SSYDWSKGHEFY 345 (368)
T ss_dssp ECCCSTTCGGGC
T ss_pred eccccccccccc
Confidence 998765555543
No 104
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=2.2e-35 Score=277.30 Aligned_cols=253 Identities=16% Similarity=0.297 Sum_probs=218.7
Q ss_pred CCCCCceeEEEEccCCCEEEEec-CCEEEEEeCCCC----ceeeEeccCCCceEEEEECC--CCCEEEEeeCcCeEEEee
Q 007229 15 STERGRGILISGNPKTDTILYCN-GRSVLIRYLDKP----LHVEFYGEHGYPVTVARYSP--NGEWIASADVSGSVRIWG 87 (612)
Q Consensus 15 ~~~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~----~~~~~~~~h~~~v~~~~~s~--d~~~las~~~d~~i~iwd 87 (612)
..|.+.|++++|+|++++|++++ ++.|++||+.++ +....+.+|...|++++|+| |+++|++++.||.|++||
T Consensus 8 ~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd 87 (351)
T 3f3f_A 8 SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWE 87 (351)
T ss_dssp CCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEE
T ss_pred cccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEe
Confidence 46889999999999999999998 899999999976 45667789999999999999 699999999999999999
Q ss_pred cCCCc--------eeeeeeeecCCCeEEEEECCC--CCEEEEEeCCCCeeeEEEEEecCCceeeeec-------------
Q 007229 88 THNGF--------VLKNEFKVLSGRIDDLQWSPD--GLRIVACGDGKGKSFVRAFMWDSGTTVGDFD------------- 144 (612)
Q Consensus 88 ~~~~~--------~~~~~~~~~~~~i~~~~~s~~--~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~------------- 144 (612)
+.+++ .....+..|...|.+++|+|+ +++|++++.++ .+++|+..+++.+..+.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 164 (351)
T 3f3f_A 88 EDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDG---ILRLYDALEPSDLRSWTLTSEMKVLSIPPA 164 (351)
T ss_dssp ECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTC---EEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred cCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCC---cEEEecCCChHHhccccccccccccccccC
Confidence 98864 245577789999999999999 99999999988 57888877776554443
Q ss_pred cCCceEEEEEEcCC---CCEEEEEeecCCeEEEEeCCCCee--eecccccccceEEEEECCCC----CeEEEEEcCCcEE
Q 007229 145 GHSRRVLSCEFKPT---RPFRIATCGEDFLVNFYEGPPFKF--KLSHREHSNFVNCIRFSPDG----SKLISVSSDRKGL 215 (612)
Q Consensus 145 ~~~~~v~~~~~~~~---~~~~l~~~~~d~~i~~wd~~~~~~--~~~~~~~~~~v~~~~~s~~~----~~l~~~~~dg~i~ 215 (612)
.|...+.+++|+|+ +. ++++++.++.+.+|+...++. ...+.+|...|.+++|+|++ ++|++++.||.|+
T Consensus 165 ~~~~~~~~~~~~p~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~ 243 (351)
T 3f3f_A 165 NHLQSDFCLSWCPSRFSPE-KLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIR 243 (351)
T ss_dssp SCSCCCEEEEECCCSSSCC-EEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEE
T ss_pred CcccceeEEEeccCCCCCc-EEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEE
Confidence 68899999999997 66 699999999999998887765 66688999999999999998 8999999999999
Q ss_pred EEecCCC----------------------------------------------CeeeeeeccCCccccEEEEEEecCCCE
Q 007229 216 IYDGKSG----------------------------------------------EKIGEFSSEDGHHGSIYAVSWSPDGKK 249 (612)
Q Consensus 216 vwd~~~~----------------------------------------------~~~~~~~~~~~~~~~v~~i~~~~~~~~ 249 (612)
+||+.++ +.+..+ .+|...|.+++|+|++++
T Consensus 244 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~v~~~~~s~~~~~ 320 (351)
T 3f3f_A 244 IFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEH---DDHNGEVWSVSWNLTGTI 320 (351)
T ss_dssp EEEEEECC---------------------------------------CCSEEEEEEEEE---CTTSSCEEEEEECSSSCC
T ss_pred EEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEE---ecccccEEEEEEcCCCCE
Confidence 9999875 233333 478999999999999999
Q ss_pred EEEEeCCCcEEEEEeecCCCCCeeEeeee
Q 007229 250 VLTVSADKSAKVWEILEDGSGGRVIKTFA 278 (612)
Q Consensus 250 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 278 (612)
|++++.||.|++|++ ..++....+.
T Consensus 321 l~s~~~dg~v~iw~~----~~~~~~~~~~ 345 (351)
T 3f3f_A 321 LSSAGDDGKVRLWKA----TYSNEFKCMS 345 (351)
T ss_dssp EEEEETTSCEEEEEE----CTTSCEEEEE
T ss_pred EEEecCCCcEEEEec----CcCcchhhee
Confidence 999999999999999 6665555443
No 105
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=4.4e-35 Score=282.34 Aligned_cols=277 Identities=21% Similarity=0.313 Sum_probs=238.9
Q ss_pred eccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEe
Q 007229 55 YGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMW 134 (612)
Q Consensus 55 ~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~ 134 (612)
..+|...|.|+.+ ++++|++|+.||.|++||+.+++ ....+.+|...|.+++| ++++|++++.++ .+++|++
T Consensus 129 ~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg---~i~vwd~ 200 (435)
T 1p22_A 129 RSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLE-CKRILTGHTGSVLCLQY--DERVIITGSSDS---TVRVWDV 200 (435)
T ss_dssp CCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCC-EEEEECCCSSCEEEEEC--CSSEEEEEETTS---CEEEEES
T ss_pred ccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCe-EEEEEcCCCCcEEEEEE--CCCEEEEEcCCC---eEEEEEC
Confidence 3456778988887 89999999999999999999988 55678899999999999 788999999998 5789999
Q ss_pred cCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeee---ecccccccceEEEEECCCCCeEEEEEcC
Q 007229 135 DSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFK---LSHREHSNFVNCIRFSPDGSKLISVSSD 211 (612)
Q Consensus 135 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~---~~~~~~~~~v~~~~~s~~~~~l~~~~~d 211 (612)
++++.+..+.+|...|.+++|+++ .+++|+.||.|++||+.+++.. ..+.+|...|.+++| +++++++++.|
T Consensus 201 ~~~~~~~~~~~h~~~v~~l~~~~~---~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~d 275 (435)
T 1p22_A 201 NTGEMLNTLIHHCEAVLHLRFNNG---MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGD 275 (435)
T ss_dssp SSCCEEEEECCCCSCEEEEECCTT---EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETT
T ss_pred CCCcEEEEEcCCCCcEEEEEEcCC---EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCC
Confidence 999999999999999999999854 6999999999999999987765 567889999999999 68899999999
Q ss_pred CcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeee
Q 007229 212 RKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVG 291 (612)
Q Consensus 212 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (612)
|.|++||+++++.+..+ .+|...|.+++|+ ++++++++.||.|++||+ .+++.+..
T Consensus 276 g~i~vwd~~~~~~~~~~---~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~----~~~~~~~~--------------- 331 (435)
T 1p22_A 276 RTIKVWNTSTCEFVRTL---NGHKRGIACLQYR--DRLVVSGSSDNTIRLWDI----ECGACLRV--------------- 331 (435)
T ss_dssp SEEEEEETTTCCEEEEE---ECCSSCEEEEEEE--TTEEEEEETTSCEEEEET----TTCCEEEE---------------
T ss_pred CeEEEEECCcCcEEEEE---cCCCCcEEEEEeC--CCEEEEEeCCCeEEEEEC----CCCCEEEE---------------
Confidence 99999999999999888 3789999999994 679999999999999999 66555433
Q ss_pred eeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCce---------e
Q 007229 292 CLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGY---------S 362 (612)
Q Consensus 292 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~---------~ 362 (612)
+.+|...|.++.+ + +..+++|+.||.|++||+..+. .
T Consensus 332 -------------------------------~~~h~~~v~~~~~-~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~ 377 (435)
T 1p22_A 332 -------------------------------LEGHEELVRCIRF-D--NKRIVSGAYDGKIKVWDLVAALDPRAPAGTLC 377 (435)
T ss_dssp -------------------------------ECCCSSCEEEEEC-C--SSEEEEEETTSCEEEEEHHHHTSTTSCTTTTE
T ss_pred -------------------------------EeCCcCcEEEEEe-c--CCEEEEEeCCCcEEEEECCCCCCccccccchh
Confidence 3457788888888 3 8899999999999999997765 5
Q ss_pred eeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCC
Q 007229 363 SKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGEC 402 (612)
Q Consensus 363 ~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~ 402 (612)
......|...|.++++++..+++++.||.|++||+.+...
T Consensus 378 ~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~i~iwd~~~~~~ 417 (435)
T 1p22_A 378 LRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWDFLNDPA 417 (435)
T ss_dssp EEEECCCSSCCCCEEECSSCEEECCSSSEEEEEC------
T ss_pred eeeccCCCCCeEEEEeCCCEEEEEeCCCEEEEEECCCCCC
Confidence 5555669999999999999999999999999999987654
No 106
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-35 Score=279.76 Aligned_cols=263 Identities=19% Similarity=0.253 Sum_probs=211.7
Q ss_pred CceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCC--CCeeeecccccccceEEEEECCC--CCeEEEEEcCC
Q 007229 137 GTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGP--PFKFKLSHREHSNFVNCIRFSPD--GSKLISVSSDR 212 (612)
Q Consensus 137 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~--~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg 212 (612)
|+.+..+.+|...|++++|+|+++ +|++++.||.|++||+. +++....+.+|...|.+++|+|+ +++|++++.||
T Consensus 1 G~~~~~~~~h~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg 79 (379)
T 3jrp_A 1 GSMVVIANAHNELIHDAVLDYYGK-RLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG 79 (379)
T ss_dssp ----CCEEECCCCEEEEEECSSSS-EEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred CCccEEecCCcccEEEEEEcCCCC-EEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCC
Confidence 356678899999999999999999 59999999999999998 66777788999999999999987 89999999999
Q ss_pred cEEEEecCCCC--eeeeeeccCCccccEEEEEEecC--CCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCcccccee
Q 007229 213 KGLIYDGKSGE--KIGEFSSEDGHHGSIYAVSWSPD--GKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDM 288 (612)
Q Consensus 213 ~i~vwd~~~~~--~~~~~~~~~~~~~~v~~i~~~~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (612)
.|++||+.+++ ....+ ..|...|.+++|+|+ ++++++++.||.|++||+ .......
T Consensus 80 ~v~iwd~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~----~~~~~~~------------- 139 (379)
T 3jrp_A 80 KVLIWKEENGRWSQIAVH---AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEF----KENGTTS------------- 139 (379)
T ss_dssp CEEEEEEETTEEEEEEEE---CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEC----CTTSCCC-------------
T ss_pred EEEEEEcCCCceeEeeee---cCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEec----CCCCcee-------------
Confidence 99999999987 44444 378999999999999 999999999999999999 4332211
Q ss_pred eeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEec------------CCcEEEEEecCCcEEEEE
Q 007229 289 LVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKI------------SQQTILSSSYDGAIIKWI 356 (612)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------------~~~~l~~~~~dg~i~~wd 356 (612)
...+.+|...+.+++|++. ++..+++++.||.|++||
T Consensus 140 -------------------------------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d 188 (379)
T 3jrp_A 140 -------------------------------PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWK 188 (379)
T ss_dssp -------------------------------EEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEE
T ss_pred -------------------------------eEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEE
Confidence 1234467888899988864 578888888899999888
Q ss_pred cCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEE
Q 007229 357 RGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVI 436 (612)
Q Consensus 357 ~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (612)
++.+......
T Consensus 189 ~~~~~~~~~~---------------------------------------------------------------------- 198 (379)
T 3jrp_A 189 YNSDAQTYVL---------------------------------------------------------------------- 198 (379)
T ss_dssp EETTTTEEEE----------------------------------------------------------------------
T ss_pred ecCCCcceee----------------------------------------------------------------------
Confidence 7654321110
Q ss_pred Eeecccceeee-cccceEEEEEEccC---CCeEEEEecCCeEEEEEccCccc---ccceeeccccCceEEEEEcCCCcEE
Q 007229 437 LLDSLKVMSKI-DLGFTVTACAIAPD---GSEAIVGGQNGKLHIYSISGNTL---TEEMVLEKHRGAITVIQYSPDVSMF 509 (612)
Q Consensus 437 ~~~~~~~~~~~-~~~~~i~~~~~s~~---~~~l~~~~~dg~v~i~d~~~~~~---~~~~~~~~~~~~i~~~~~s~~~~~l 509 (612)
...+ .|...|.+++|+|+ +++|++++.||.|++||+.++.. ........|...|.+++|+|++++|
T Consensus 199 -------~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 271 (379)
T 3jrp_A 199 -------ESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVL 271 (379)
T ss_dssp -------EEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCE
T ss_pred -------EEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEE
Confidence 0111 14457999999999 89999999999999999988642 1123334588999999999999999
Q ss_pred EEEcCCCeEEEEecCCcce
Q 007229 510 ASADGNREAIVWDRVSKEV 528 (612)
Q Consensus 510 ~~~~~d~~i~iwd~~~~~~ 528 (612)
++++.||.|++|++.....
T Consensus 272 ~~~~~dg~i~iw~~~~~~~ 290 (379)
T 3jrp_A 272 ALSGGDNKVTLWKENLEGK 290 (379)
T ss_dssp EEEESSSSEEEEEEEETTE
T ss_pred EEecCCCcEEEEeCCCCCc
Confidence 9999999999999986543
No 107
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=1.9e-35 Score=282.07 Aligned_cols=283 Identities=17% Similarity=0.217 Sum_probs=225.8
Q ss_pred EEEEEEcCCCCEEEEEeecCCeEEEEeCCCCe----eeecccccccceEEEEECC-CCCeEEEEEcCCcEEEEecCCC--
Q 007229 150 VLSCEFKPTRPFRIATCGEDFLVNFYEGPPFK----FKLSHREHSNFVNCIRFSP-DGSKLISVSSDRKGLIYDGKSG-- 222 (612)
Q Consensus 150 v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~----~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~-- 222 (612)
...++++|+...++++++.||.|++|++.... ....+.+|...|.+++|+| ++++|++++.||.|++||+.++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~ 116 (402)
T 2aq5_A 37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGL 116 (402)
T ss_dssp SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCC
T ss_pred CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCC
Confidence 34578888876556678999999999986643 3345778999999999999 9999999999999999999988
Q ss_pred -----CeeeeeeccCCccccEEEEEEecCC-CEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccC
Q 007229 223 -----EKIGEFSSEDGHHGSIYAVSWSPDG-KKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQN 296 (612)
Q Consensus 223 -----~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (612)
+.+..+ .+|...|.+++|+|++ ++|++++.||.|++||+ .+++.+..+..
T Consensus 117 ~~~~~~~~~~~---~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~----~~~~~~~~~~~----------------- 172 (402)
T 2aq5_A 117 VLPLREPVITL---EGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDV----GTGAAVLTLGP----------------- 172 (402)
T ss_dssp SSCBCSCSEEE---ECCSSCEEEEEECSSBTTEEEEEETTSCEEEEET----TTTEEEEEECT-----------------
T ss_pred ccccCCceEEe---cCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEEC----CCCCccEEEec-----------------
Confidence 445555 4899999999999998 69999999999999998 44433322100
Q ss_pred CEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEE
Q 007229 297 DHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCL 376 (612)
Q Consensus 297 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~ 376 (612)
.+
T Consensus 173 ---------------------------~~--------------------------------------------------- 174 (402)
T 2aq5_A 173 ---------------------------DV--------------------------------------------------- 174 (402)
T ss_dssp ---------------------------TT---------------------------------------------------
T ss_pred ---------------------------CC---------------------------------------------------
Confidence 00
Q ss_pred EeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEE
Q 007229 377 AAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTAC 456 (612)
Q Consensus 377 ~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 456 (612)
+...|.++
T Consensus 175 ------------------------------------------------------------------------~~~~v~~~ 182 (402)
T 2aq5_A 175 ------------------------------------------------------------------------HPDTIYSV 182 (402)
T ss_dssp ------------------------------------------------------------------------CCSCEEEE
T ss_pred ------------------------------------------------------------------------CCCceEEE
Confidence 12347889
Q ss_pred EEccCCCeEEEEecCCeEEEEEccCcccccceee-ccccCc-eEEEEEcCCCcEEEEE---cCCCeEEEEecCCcceee-
Q 007229 457 AIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVL-EKHRGA-ITVIQYSPDVSMFASA---DGNREAIVWDRVSKEVKL- 530 (612)
Q Consensus 457 ~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~-~~~~~~-i~~~~~s~~~~~l~~~---~~d~~i~iwd~~~~~~~~- 530 (612)
+|+|++++|++++.||.|++||+++++. ...+ ..|.+. +.+++|+|++++|+++ +.|+.|++||+.+.+...
T Consensus 183 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~ 260 (402)
T 2aq5_A 183 DWSRDGALICTSCRDKRVRVIEPRKGTV--VAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLS 260 (402)
T ss_dssp EECTTSSCEEEEETTSEEEEEETTTTEE--EEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSE
T ss_pred EECCCCCEEEEEecCCcEEEEeCCCCce--eeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCce
Confidence 9999999999999999999999998876 4555 677766 8999999999999999 899999999999876522
Q ss_pred ecccccccceeEEEecCCCcEEEE-eecCcEEEEEEccCCCcceeeeecc--cccCeeeEEEe-cCceEEEccCCCeEEE
Q 007229 531 NNMLFHTARINCLAWSPSSTMVAT-GSIDTCVIIYEIGKPASSRITIKNA--HLGGVYGVAFM-DDFNVVSSGEDACIRV 606 (612)
Q Consensus 531 ~~~~~~~~~i~~~~~s~~~~~l~s-~~~d~~i~iwd~~~~~~~~~~~~~~--h~~~v~~~~~~-~~~~l~s~~~d~~i~~ 606 (612)
.....|...+.+++|+|++++|++ ++.|+.|++||+.++. ..+..+.. |...|.+++|+ ++.++++ .|+.+++
T Consensus 261 ~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~-~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~ 337 (402)
T 2aq5_A 261 LQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEA-PFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARF 337 (402)
T ss_dssp EEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSST-TCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEE
T ss_pred EEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCC-cceEeecccccCCcccceEEeccccccee--cceeEEE
Confidence 222347788999999999999875 5579999999999843 33444444 45899999999 6666654 4679999
Q ss_pred EEecc
Q 007229 607 WRLAT 611 (612)
Q Consensus 607 w~~~~ 611 (612)
|++.+
T Consensus 338 ~~l~~ 342 (402)
T 2aq5_A 338 YKLHE 342 (402)
T ss_dssp EEEET
T ss_pred EEcCC
Confidence 99875
No 108
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-35 Score=279.67 Aligned_cols=246 Identities=21% Similarity=0.309 Sum_probs=214.2
Q ss_pred CCCCCceeEEEEccCCCEEEEec-CCEEEEEeCC--CCceeeEeccCCCceEEEEECCC--CCEEEEeeCcCeEEEeecC
Q 007229 15 STERGRGILISGNPKTDTILYCN-GRSVLIRYLD--KPLHVEFYGEHGYPVTVARYSPN--GEWIASADVSGSVRIWGTH 89 (612)
Q Consensus 15 ~~~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~--~~~~~~~~~~h~~~v~~~~~s~d--~~~las~~~d~~i~iwd~~ 89 (612)
..|.+.|.+++|+|++++||+++ ++.|+|||+. +++.+..+.+|...|++++|+|+ +++|++++.||.|++||+.
T Consensus 8 ~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~ 87 (379)
T 3jrp_A 8 NAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEE 87 (379)
T ss_dssp EECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEE
T ss_pred cCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcC
Confidence 46788999999999999999997 8999999998 56777789999999999999987 9999999999999999999
Q ss_pred CCce-eeeeeeecCCCeEEEEECCC--CCEEEEEeCCCCeeeEEEEEecCC--ceeeeeccCCceEEEEEEcC-------
Q 007229 90 NGFV-LKNEFKVLSGRIDDLQWSPD--GLRIVACGDGKGKSFVRAFMWDSG--TTVGDFDGHSRRVLSCEFKP------- 157 (612)
Q Consensus 90 ~~~~-~~~~~~~~~~~i~~~~~s~~--~~~l~~~~~~~~~~~i~i~~~~~~--~~~~~~~~~~~~v~~~~~~~------- 157 (612)
+++. ....+..|...|.+++|+|+ +++|++++.++ .+.+|+...+ .....+.+|...|.+++|+|
T Consensus 88 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~---~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 164 (379)
T 3jrp_A 88 NGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDG---KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG 164 (379)
T ss_dssp TTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS---EEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC-----
T ss_pred CCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCC---cEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccc
Confidence 8862 34466779999999999999 99999999988 5778887765 34556789999999999999
Q ss_pred ------CCCEEEEEeecCCeEEEEeCCCCe----eeecccccccceEEEEECCC---CCeEEEEEcCCcEEEEecCCCCe
Q 007229 158 ------TRPFRIATCGEDFLVNFYEGPPFK----FKLSHREHSNFVNCIRFSPD---GSKLISVSSDRKGLIYDGKSGEK 224 (612)
Q Consensus 158 ------~~~~~l~~~~~d~~i~~wd~~~~~----~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~dg~i~vwd~~~~~~ 224 (612)
++. ++++++.|+.|++||+.++. ....+.+|...|.+++|+|+ +++|++++.||.|++||+.+++.
T Consensus 165 ~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~ 243 (379)
T 3jrp_A 165 EHNGTKESR-KFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQG 243 (379)
T ss_dssp -----CTTC-EEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTS
T ss_pred cccCCCCCC-EEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCc
Confidence 577 69999999999999987654 44567889999999999999 89999999999999999998752
Q ss_pred ee--eeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEe
Q 007229 225 IG--EFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 225 ~~--~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~ 264 (612)
.. .......|...|.+++|+|++++|++++.||.|++|++
T Consensus 244 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~ 285 (379)
T 3jrp_A 244 PWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE 285 (379)
T ss_dssp CCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEE
T ss_pred cceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeC
Confidence 21 12112358889999999999999999999999999999
No 109
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-34 Score=278.94 Aligned_cols=240 Identities=15% Similarity=0.089 Sum_probs=203.8
Q ss_pred CceeEEEEccCCCEEEEecCCEEEEEeCCCCc---eeeEecc--------------------------------------
Q 007229 19 GRGILISGNPKTDTILYCNGRSVLIRYLDKPL---HVEFYGE-------------------------------------- 57 (612)
Q Consensus 19 ~~v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~---~~~~~~~-------------------------------------- 57 (612)
..+.+++|+|||++|+++.++.|.+||+.+++ .+..+..
T Consensus 5 ~p~~~v~~s~dg~~l~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSI 84 (450)
T ss_dssp CCCCEEEECSSSSEEEEEETTEEEEEEEETTTEEEEEEEEECCC------------------------------------
T ss_pred ccEEEEEecCCCCEEEEEeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCccc
Confidence 46789999999998888889999999999998 5554443
Q ss_pred ----------------CCCceEEEEECCCCCEE-EEeeCcCeEEEeecC--CCceeeeeee--ecCCCeEEEEECCCCCE
Q 007229 58 ----------------HGYPVTVARYSPNGEWI-ASADVSGSVRIWGTH--NGFVLKNEFK--VLSGRIDDLQWSPDGLR 116 (612)
Q Consensus 58 ----------------h~~~v~~~~~s~d~~~l-as~~~d~~i~iwd~~--~~~~~~~~~~--~~~~~i~~~~~s~~~~~ 116 (612)
|...|++++|+|++++| |+++.||.|+|||+. +++. ...+. .|...|.+++|+|++++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~v~~~~~sp~~~~ 163 (450)
T 2vdu_B 85 KRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNV-LKLRKRFCFSKRPNAISIAEDDTT 163 (450)
T ss_dssp ---------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSC-EEEEEEEECSSCEEEEEECTTSSE
T ss_pred cccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCce-eeeeecccCCCCceEEEEcCCCCE
Confidence 34479999999999996 899999999999999 7764 33454 56789999999999999
Q ss_pred EEEEeCCCCeeeEEEEEecCCcee----eeeccCCceEEEEEEcCC---CCEEEEEeecCCeEEEEeCCCCeeeec-ccc
Q 007229 117 IVACGDGKGKSFVRAFMWDSGTTV----GDFDGHSRRVLSCEFKPT---RPFRIATCGEDFLVNFYEGPPFKFKLS-HRE 188 (612)
Q Consensus 117 l~~~~~~~~~~~i~i~~~~~~~~~----~~~~~~~~~v~~~~~~~~---~~~~l~~~~~d~~i~~wd~~~~~~~~~-~~~ 188 (612)
|++++.++ .+.+|...+++.. ..+.+|...|.+++|+|+ ++ +|++++.|+.|++||+.+++.+.. +.+
T Consensus 164 l~~~~~~g---~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~-~l~s~~~d~~i~vwd~~~~~~~~~~~~~ 239 (450)
T 2vdu_B 164 VIIADKFG---DVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQ-FIITSDRDEHIKISHYPQCFIVDKWLFG 239 (450)
T ss_dssp EEEEETTS---EEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCE-EEEEEETTSCEEEEEESCTTCEEEECCC
T ss_pred EEEEeCCC---cEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCc-EEEEEcCCCcEEEEECCCCceeeeeecC
Confidence 99999877 3455554455543 378899999999999999 77 599999999999999999988877 668
Q ss_pred cccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccC----------------------CccccEEEEEEecC
Q 007229 189 HSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSED----------------------GHHGSIYAVSWSPD 246 (612)
Q Consensus 189 ~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~----------------------~~~~~v~~i~~~~~ 246 (612)
|...|.+++|+ ++++|++++.|+.|++||+.+++.+..+.... .....+..++|+|+
T Consensus 240 h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 318 (450)
T 2vdu_B 240 HKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKN 318 (450)
T ss_dssp CSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSS
T ss_pred CCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCC
Confidence 99999999999 99999999999999999999999887774210 23457899999999
Q ss_pred CCEEEEEe-CCCcEEEEEe
Q 007229 247 GKKVLTVS-ADKSAKVWEI 264 (612)
Q Consensus 247 ~~~l~~~~-~dg~i~iw~~ 264 (612)
++++++++ .++.|++|++
T Consensus 319 ~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 319 LPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp SSEEEEEETTCSEEEEEEE
T ss_pred CCEEEEEECCCCeEEEEEe
Confidence 99999998 8999999998
No 110
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=8.1e-35 Score=271.31 Aligned_cols=292 Identities=14% Similarity=0.106 Sum_probs=204.9
Q ss_pred EEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEE-EE
Q 007229 174 FYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKV-LT 252 (612)
Q Consensus 174 ~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l-~~ 252 (612)
+|++.+.+.+.....|...|.+++|+|||++|++|+.++ +++||+++++..... .+ ..+..+++.++++.+ ++
T Consensus 3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~ 76 (355)
T 3vu4_A 3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQ----EM-RHLSKVRMLHRTNYVAFV 76 (355)
T ss_dssp ----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEE----EC-SCCCEEEECTTSSEEEEE
T ss_pred cccccccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeee----ec-CCeEEEEEcCCCCEEEEE
Confidence 456666777777789999999999999999999888665 889999887766554 11 247778888888877 45
Q ss_pred EeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeE
Q 007229 253 VSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVST 332 (612)
Q Consensus 253 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~ 332 (612)
++.|+.|++||. .+++.+..+. +...|.+
T Consensus 77 ~~~d~~v~iWd~----~~~~~~~~~~-----------------------------------------------~~~~v~~ 105 (355)
T 3vu4_A 77 TGVKEVVHIWDD----VKKQDVSRIK-----------------------------------------------VDAPVKD 105 (355)
T ss_dssp CSSTTEEEEEET----TTTEEEEEEE-----------------------------------------------CSSCEEE
T ss_pred ECCccEEEEEEC----CCCcEEEEEE-----------------------------------------------CCCceEE
Confidence 677899999999 7777665543 3346677
Q ss_pred EEEEecCCcEEEEEecCCcEEEEEcCCc-eeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccC
Q 007229 333 LTALKISQQTILSSSYDGAIIKWIRGVG-YSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVG 411 (612)
Q Consensus 333 ~~~~~~~~~~l~~~~~dg~i~~wd~~~~-~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 411 (612)
+.+++ +.++.+ .++.|++||+.+. +......
T Consensus 106 v~~~~---~~~~~~-~~~~i~i~d~~~~~~~~~~~~-------------------------------------------- 137 (355)
T 3vu4_A 106 LFLSR---EFIVVS-YGDVISVFKFGNPWKRITDDI-------------------------------------------- 137 (355)
T ss_dssp EEECS---SEEEEE-ETTEEEEEESSTTCCBSSCCE--------------------------------------------
T ss_pred EEEcC---CEEEEE-EcCEEEEEECCCCceeeEEec--------------------------------------------
Confidence 77663 334433 3678888887765 3222211
Q ss_pred CCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEE--EecCCeEEEEEccCccc-----
Q 007229 412 SQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIV--GGQNGKLHIYSISGNTL----- 484 (612)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~--~~~dg~v~i~d~~~~~~----- 484 (612)
. +...+++++ .++++ |+.+|.|++||+.++..
T Consensus 138 -------------------------------------~--~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~ 176 (355)
T 3vu4_A 138 -------------------------------------R--FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQD 176 (355)
T ss_dssp -------------------------------------E--EEEEEEEET--TEEEEEESSCTTCEEEEECCC--------
T ss_pred -------------------------------------c--CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCcccccc
Confidence 0 122345555 55655 57889999999887540
Q ss_pred --------cc-ceeeccccCceEEEEEcCCCcEEEEEcCCCe-EEEEecCCcceeeecccc-cccceeEEEecCCCcEEE
Q 007229 485 --------TE-EMVLEKHRGAITVIQYSPDVSMFASADGNRE-AIVWDRVSKEVKLNNMLF-HTARINCLAWSPSSTMVA 553 (612)
Q Consensus 485 --------~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~-i~iwd~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~ 553 (612)
.+ ...+.+|.++|++++|+|++++||+++.|++ |++||+.+++.+.....+ |...|++++|+||+++|+
T Consensus 177 ~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~ 256 (355)
T 3vu4_A 177 QGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLA 256 (355)
T ss_dssp ----------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEE
T ss_pred ccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEE
Confidence 11 4678899999999999999999999999998 999999999987443325 999999999999999999
Q ss_pred EeecCcEEEEEEccCCCcceeeeecc---------------------cccCeeeEEEe-cCceEEEccCCCeEEEEEecc
Q 007229 554 TGSIDTCVIIYEIGKPASSRITIKNA---------------------HLGGVYGVAFM-DDFNVVSSGEDACIRVWRLAT 611 (612)
Q Consensus 554 s~~~d~~i~iwd~~~~~~~~~~~~~~---------------------h~~~v~~~~~~-~~~~l~s~~~d~~i~~w~~~~ 611 (612)
+++.|++|++||++.+.......+.. +......++|+ +++.|++++.||.+++|++..
T Consensus 257 s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~ 336 (355)
T 3vu4_A 257 VVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVF 336 (355)
T ss_dssp EEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEE
T ss_pred EEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEc
Confidence 99999999999997633122222111 12234678999 888999999999999999864
No 111
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=9.1e-35 Score=273.09 Aligned_cols=303 Identities=17% Similarity=0.199 Sum_probs=222.8
Q ss_pred eeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCce---eeeeeeecCCCeEEEEECC--CCCEEEEEeCCCC
Q 007229 51 HVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFV---LKNEFKVLSGRIDDLQWSP--DGLRIVACGDGKG 125 (612)
Q Consensus 51 ~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~---~~~~~~~~~~~i~~~~~s~--~~~~l~~~~~~~~ 125 (612)
....+.+|.+.|++++|+|++++||+++.||.|++||+.++.. +...+.+|...|.+++|+| |+++|++++.++
T Consensus 3 ~~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg- 81 (351)
T 3f3f_A 3 MQPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDK- 81 (351)
T ss_dssp CCCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTS-
T ss_pred ccccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCC-
Confidence 3456789999999999999999999999999999999997642 5556788999999999999 699999999988
Q ss_pred eeeEEEEEecCC---------ceeeeeccCCceEEEEEEcCC--CCEEEEEeecCCeEEEEeCCCCeeeeccc-------
Q 007229 126 KSFVRAFMWDSG---------TTVGDFDGHSRRVLSCEFKPT--RPFRIATCGEDFLVNFYEGPPFKFKLSHR------- 187 (612)
Q Consensus 126 ~~~i~i~~~~~~---------~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~~~~~~~------- 187 (612)
.+++|+.+.+ +.+..+.+|...|.+++|+|+ +. ++++++.||.|++||+.+++.+..+.
T Consensus 82 --~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~ 158 (351)
T 3f3f_A 82 --TVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL-KLACLGNDGILRLYDALEPSDLRSWTLTSEMKV 158 (351)
T ss_dssp --CEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTCEEEEEECSSTTCTTCCEEEEEEES
T ss_pred --eEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCc-EEEEecCCCcEEEecCCChHHhccccccccccc
Confidence 5788888876 568888999999999999999 88 59999999999999998877655443
Q ss_pred ------ccccceEEEEECCC---CCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCC----CEEEEEe
Q 007229 188 ------EHSNFVNCIRFSPD---GSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDG----KKVLTVS 254 (612)
Q Consensus 188 ------~~~~~v~~~~~s~~---~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~----~~l~~~~ 254 (612)
.|...+.+++|+|+ ++++++++.++.+.+|+...++..... ...+|...|.+++|+|++ ++|++++
T Consensus 159 ~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~i~~~~~~p~~~~~~~~l~s~~ 237 (351)
T 3f3f_A 159 LSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAA-KLPGHKSLIRSISWAPSIGRWYQLIATGC 237 (351)
T ss_dssp CSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEE-ECCCCCSCEEEEEECCCSSCSSEEEEEEE
T ss_pred cccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeee-ecCCCCcceeEEEECCCCCCcceEEEEEc
Confidence 67889999999997 899999999999988887777652222 224899999999999998 8999999
Q ss_pred CCCcEEEEEeecCCCCCeeEeeeeccCccc-cceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEE
Q 007229 255 ADKSAKVWEILEDGSGGRVIKTFASSTSNA-VEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTL 333 (612)
Q Consensus 255 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~ 333 (612)
.||.|++||+ ..+............. .................+.....+.+|+ .........+.+|...|.++
T Consensus 238 ~dg~i~iwd~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~h~~~v~~~ 312 (351)
T 3f3f_A 238 KDGRIRIFKI----TEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQS-NLQVELLSEHDDHNGEVWSV 312 (351)
T ss_dssp TTSCEEEEEE----EECC---------------------------------------CC-SEEEEEEEEECTTSSCEEEE
T ss_pred CCCeEEEEeC----CCCcCccccCCcccceeccCCCcccccccccccccccceeeeecc-cccccEEEEEecccccEEEE
Confidence 9999999999 3332222111110000 0000000000011111222223333333 12234456678899999999
Q ss_pred EEEecCCcEEEEEecCCcEEEEEcCCceeee
Q 007229 334 TALKISQQTILSSSYDGAIIKWIRGVGYSSK 364 (612)
Q Consensus 334 ~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~ 364 (612)
+|++. +++|++++.||.|++|++..+....
T Consensus 313 ~~s~~-~~~l~s~~~dg~v~iw~~~~~~~~~ 342 (351)
T 3f3f_A 313 SWNLT-GTILSSAGDDGKVRLWKATYSNEFK 342 (351)
T ss_dssp EECSS-SCCEEEEETTSCEEEEEECTTSCEE
T ss_pred EEcCC-CCEEEEecCCCcEEEEecCcCcchh
Confidence 99942 7899999999999999998765443
No 112
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=3.9e-35 Score=279.91 Aligned_cols=288 Identities=18% Similarity=0.200 Sum_probs=234.3
Q ss_pred ceeEEEEccCCCEEEEe-c-CCEEEEEeCCCC----ceeeEeccCCCceEEEEECC-CCCEEEEeeCcCeEEEeecCCCc
Q 007229 20 RGILISGNPKTDTILYC-N-GRSVLIRYLDKP----LHVEFYGEHGYPVTVARYSP-NGEWIASADVSGSVRIWGTHNGF 92 (612)
Q Consensus 20 ~v~~~~~s~d~~~l~~~-~-~~~i~i~~~~~~----~~~~~~~~h~~~v~~~~~s~-d~~~las~~~d~~i~iwd~~~~~ 92 (612)
....++++|+...+++. + +|.|.||++.+. ..+..+.+|...|++++|+| ++++||+|+.||.|+|||+.++.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~ 115 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG 115 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence 44568899988766653 3 799999999754 34556789999999999999 99999999999999999999873
Q ss_pred ------eeeeeeeecCCCeEEEEECCCC-CEEEEEeCCCCeeeEEEEEecCCceeeee--ccCCceEEEEEEcCCCCEEE
Q 007229 93 ------VLKNEFKVLSGRIDDLQWSPDG-LRIVACGDGKGKSFVRAFMWDSGTTVGDF--DGHSRRVLSCEFKPTRPFRI 163 (612)
Q Consensus 93 ------~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~~~~~~~i~i~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l 163 (612)
.....+.+|...|.+++|+|++ .+|++++.++ .+++|+.++++.+..+ .+|...|.+++|+|+++ +|
T Consensus 116 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l 191 (402)
T 2aq5_A 116 LVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDN---VILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGA-LI 191 (402)
T ss_dssp CSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTS---CEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSS-CE
T ss_pred CccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCC---EEEEEECCCCCccEEEecCCCCCceEEEEECCCCC-EE
Confidence 2455788999999999999998 6899999888 5788888899999999 89999999999999999 59
Q ss_pred EEeecCCeEEEEeCCCCeeeecc-cccccc-eEEEEECCCCCeEEEE---EcCCcEEEEecCCCCeeeeeeccCCccccE
Q 007229 164 ATCGEDFLVNFYEGPPFKFKLSH-REHSNF-VNCIRFSPDGSKLISV---SSDRKGLIYDGKSGEKIGEFSSEDGHHGSI 238 (612)
Q Consensus 164 ~~~~~d~~i~~wd~~~~~~~~~~-~~~~~~-v~~~~~s~~~~~l~~~---~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v 238 (612)
++++.|+.|++||+++++.+..+ .+|.+. +.+++|+|++++|+++ +.|+.|++||+.+++...... ...+...+
T Consensus 192 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~v 270 (402)
T 2aq5_A 192 CTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQ-ELDTSSGV 270 (402)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEE-ECCCCSSC
T ss_pred EEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEE-eccCCCce
Confidence 99999999999999999998888 788776 8999999999999998 689999999999876522221 11577889
Q ss_pred EEEEEecCCCEEEEE-eCCCcEEEEEeecCCCCCee-EeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCC
Q 007229 239 YAVSWSPDGKKVLTV-SADKSAKVWEILEDGSGGRV-IKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNL 316 (612)
Q Consensus 239 ~~i~~~~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 316 (612)
.+++|+|++++|+++ +.||.|++|++ .+++. +..+..
T Consensus 271 ~~~~~s~~~~~l~~~g~~dg~i~i~d~----~~~~~~~~~l~~------------------------------------- 309 (402)
T 2aq5_A 271 LLPFFDPDTNIVYLCGKGDSSIRYFEI----TSEAPFLHYLSM------------------------------------- 309 (402)
T ss_dssp EEEEEETTTTEEEEEETTCSCEEEEEE----CSSTTCEEEEEE-------------------------------------
T ss_pred eEEEEcCCCCEEEEEEcCCCeEEEEEe----cCCCcceEeecc-------------------------------------
Confidence 999999999998755 47999999999 54442 222211
Q ss_pred CCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceee
Q 007229 317 DKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSS 363 (612)
Q Consensus 317 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~ 363 (612)
+ .|...+.+++|++. +.+++ +.++.+++|++.++...
T Consensus 310 ------~-~~~~~v~~~~~sp~-~~~~~--s~~~~~~~~~l~~~~~~ 346 (402)
T 2aq5_A 310 ------F-SSKESQRGMGYMPK-RGLEV--NKCEIARFYKLHERKCE 346 (402)
T ss_dssp ------E-CCSSCCSEEEECCG-GGSCG--GGTEEEEEEEEETTEEE
T ss_pred ------c-ccCCcccceEEecc-cccce--ecceeEEEEEcCCCcEE
Confidence 1 15678899999852 44444 45679999998876543
No 113
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=2.5e-33 Score=266.97 Aligned_cols=230 Identities=14% Similarity=0.101 Sum_probs=190.4
Q ss_pred EEEEec-CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEE-EEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEE
Q 007229 32 TILYCN-GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWI-ASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQ 109 (612)
Q Consensus 32 ~l~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l-as~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~ 109 (612)
.+++++ ++.|++||+++++.+..+.+|. .+.+++|+|+|++| ++++.|+.|++||+.+++. ...+..+. .+.+++
T Consensus 4 l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~-~~~~~~~~-~v~~~~ 80 (391)
T 1l0q_A 4 AYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV-IATVPAGS-SPQGVA 80 (391)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE-EEEEECSS-SEEEEE
T ss_pred EEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeE-EEEEECCC-CccceE
Confidence 455555 7999999999999998888775 48999999999987 6777999999999999874 44454444 999999
Q ss_pred ECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeeccccc
Q 007229 110 WSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREH 189 (612)
Q Consensus 110 ~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~ 189 (612)
|+|++++|++++.+.. .+.+|+.++++.+..+..+ ..+.+++|+|++++++++++.++.|++||+.+++.+..+..+
T Consensus 81 ~spdg~~l~~~~~~~~--~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~ 157 (391)
T 1l0q_A 81 VSPDGKQVYVTNMASS--TLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG 157 (391)
T ss_dssp ECTTSSEEEEEETTTT--EEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC
T ss_pred ECCCCCEEEEEECCCC--EEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC
Confidence 9999999977765433 4777777788888877755 467999999999976689999999999999999988887765
Q ss_pred ccceEEEEECCCCCeE-EEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEe---CCCcEEEEEee
Q 007229 190 SNFVNCIRFSPDGSKL-ISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVS---ADKSAKVWEIL 265 (612)
Q Consensus 190 ~~~v~~~~~s~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~---~dg~i~iw~~~ 265 (612)
..+.+++|+|++++| ++++.++.|++||+++++....+ .+...+.+++|+|+++++++++ .++.|++||+
T Consensus 158 -~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~----~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~- 231 (391)
T 1l0q_A 158 -RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTV----KVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDT- 231 (391)
T ss_dssp -SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE----ECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEET-
T ss_pred -CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEE----ecCCCccceEECCCCCEEEEEecCcCCCcEEEEEC-
Confidence 457999999999988 56677899999999999888777 5667899999999999999888 6899999998
Q ss_pred cCCCCCeeEee
Q 007229 266 EDGSGGRVIKT 276 (612)
Q Consensus 266 ~~~~~~~~~~~ 276 (612)
.+++.+..
T Consensus 232 ---~~~~~~~~ 239 (391)
T 1l0q_A 232 ---GTNKITAR 239 (391)
T ss_dssp ---TTTEEEEE
T ss_pred ---CCCeEEEE
Confidence 55554433
No 114
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=7.2e-33 Score=267.69 Aligned_cols=357 Identities=14% Similarity=0.057 Sum_probs=264.3
Q ss_pred cCCCceEEEEECCCCCEEEEeeC-cCeEEEeecCCCceeeeeeeecCCCeEEEE---ECCCCCEEEEEeCCCCe-ee---
Q 007229 57 EHGYPVTVARYSPNGEWIASADV-SGSVRIWGTHNGFVLKNEFKVLSGRIDDLQ---WSPDGLRIVACGDGKGK-SF--- 128 (612)
Q Consensus 57 ~h~~~v~~~~~s~d~~~las~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~---~s~~~~~l~~~~~~~~~-~~--- 128 (612)
.....|..+.+.|....++.... ....+++. ......+..++ |+|+++.++........ ..
T Consensus 25 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-----------~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 93 (433)
T 3bws_A 25 KNGTEIVKFSIHPYKGTVIRLGEEILPFKVLE-----------MDKNIALVEMAIPVYKDEKEIELKLSSPGFQNSSYRI 93 (433)
T ss_dssp --CEEEEEEEEECCTTCEEEETTEECCEEEEE-----------EETTEEEEEEEEECCCTTCCEEEEEECTTBCCEEEEE
T ss_pred cCCcEEEEEecccccCceEEcCceecceeeee-----------cccCCccEEEEEeeccCCCcEEEEEEccccCcceeee
Confidence 34556777888886443433321 11122221 12334567777 88887776655432211 01
Q ss_pred -------EEEEEecC--C--ceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeee-----cccccccc
Q 007229 129 -------VRAFMWDS--G--TTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKL-----SHREHSNF 192 (612)
Q Consensus 129 -------i~i~~~~~--~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~-----~~~~~~~~ 192 (612)
+.+|.++. + +.+..+..+. .+.+++|+|++. ++++++.++.|++||+.+++... .+.+|...
T Consensus 94 ~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~-~~~~~~~s~~~~-~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~ 171 (433)
T 3bws_A 94 RKPEELNEKLIALDKEGITHRFISRFKTGF-QPKSVRFIDNTR-LAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGF 171 (433)
T ss_dssp SSGGGGTTCEEECCBTTCSEEEEEEEECSS-CBCCCEESSSSE-EEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCE
T ss_pred cccCCCceEEEEECCCCCcceEEEEEcCCC-CceEEEEeCCCe-EEEEeCCCCeEEEEECCCCeEeeecCcccccccCCc
Confidence 25677764 4 4555565554 455999999554 78899999999999999998877 45688899
Q ss_pred eEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEe-CCCcEEEEEeecCCCCC
Q 007229 193 VNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVS-ADKSAKVWEILEDGSGG 271 (612)
Q Consensus 193 v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~ 271 (612)
|.+++|+|+++++++++.|+.|++||+++++.+..+. .|...+.+++|+|+++++++++ .++.|++||+ .++
T Consensus 172 v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~----~~~ 244 (433)
T 3bws_A 172 VETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVD---LTGKWSKILLYDPIRDLVYCSNWISEDISVIDR----KTK 244 (433)
T ss_dssp EEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEE---CSSSSEEEEEEETTTTEEEEEETTTTEEEEEET----TTT
T ss_pred eeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEc---CCCCCeeEEEEcCCCCEEEEEecCCCcEEEEEC----CCC
Confidence 9999999999999999999999999999999888873 6788999999999999886555 7899999998 443
Q ss_pred eeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCc
Q 007229 272 RVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGA 351 (612)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 351 (612)
+.+..+..
T Consensus 245 ~~~~~~~~------------------------------------------------------------------------ 252 (433)
T 3bws_A 245 LEIRKTDK------------------------------------------------------------------------ 252 (433)
T ss_dssp EEEEECCC------------------------------------------------------------------------
T ss_pred cEEEEecC------------------------------------------------------------------------
Confidence 33221110
Q ss_pred EEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEe
Q 007229 352 IIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVST 431 (612)
Q Consensus 352 i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (612)
T Consensus 253 -------------------------------------------------------------------------------- 252 (433)
T 3bws_A 253 -------------------------------------------------------------------------------- 252 (433)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eccEEEeecccceeeecccceEEEEEEccCCCeEEEEe--------cCCeEEEEEccCcccccceeeccccCceEEEEEc
Q 007229 432 ESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGG--------QNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYS 503 (612)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--------~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s 503 (612)
...+.+++|+|+++++++++ .||.|++||+.+++. .. ...|...+.+++|+
T Consensus 253 ------------------~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~--~~-~~~~~~~~~~~~~~ 311 (433)
T 3bws_A 253 ------------------IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKL--ID-TIGPPGNKRHIVSG 311 (433)
T ss_dssp ------------------CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEE--EE-EEEEEECEEEEEEC
T ss_pred ------------------CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcE--Ee-eccCCCCcceEEEC
Confidence 01256788899998888887 488999999998875 22 33556689999999
Q ss_pred CCCcE-EEEEcCCCeEEEEecCCcceeeecccccccceeEEEecCCCcEEEEeec---------------CcEEEEEEcc
Q 007229 504 PDVSM-FASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSI---------------DTCVIIYEIG 567 (612)
Q Consensus 504 ~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~---------------d~~i~iwd~~ 567 (612)
|+++. +++++.|+.|++||+.+++.. ..+. +...+.+++|+|++++|++++. ||.|++||+.
T Consensus 312 ~~g~~l~~~~~~~~~v~v~d~~~~~~~-~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~ 389 (433)
T 3bws_A 312 NTENKIYVSDMCCSKIEVYDLKEKKVQ-KSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTT 389 (433)
T ss_dssp SSTTEEEEEETTTTEEEEEETTTTEEE-EEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETT
T ss_pred CCCCEEEEEecCCCEEEEEECCCCcEE-EEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECC
Confidence 99975 466789999999999988876 3343 6778999999999999988876 5799999998
Q ss_pred CCCcceeeeecccccCeeeEEEe-cCceEEEcc-CCCeEEEEEecc
Q 007229 568 KPASSRITIKNAHLGGVYGVAFM-DDFNVVSSG-EDACIRVWRLAT 611 (612)
Q Consensus 568 ~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~~-~d~~i~~w~~~~ 611 (612)
+ + +.+..+.. ...+.+++|+ ++++|++++ .|+.|++|+++.
T Consensus 390 ~-~-~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 390 T-D-TVKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp T-T-EEEEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred C-C-cEEEEecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 8 5 66666665 4579999999 888888776 599999999864
No 115
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-33 Score=271.03 Aligned_cols=357 Identities=12% Similarity=0.057 Sum_probs=221.9
Q ss_pred CCceEEEEECCCCCEEEEeeCcCeEEEeecCCCce--eeeeeeecCCCeEEEEEC---CCCCEEEEEeCCCCee------
Q 007229 59 GYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFV--LKNEFKVLSGRIDDLQWS---PDGLRIVACGDGKGKS------ 127 (612)
Q Consensus 59 ~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~--~~~~~~~~~~~i~~~~~s---~~~~~l~~~~~~~~~~------ 127 (612)
..++++++|+|||++|+++ .++.|++||+.+++. ....+..+........+. .++..+.....+....
T Consensus 4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 3578999999999977766 577999999999872 112333332212222221 1122222211111000
Q ss_pred eEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCC--CCeeeeccc--ccccceEEEEECCCCC
Q 007229 128 FVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGP--PFKFKLSHR--EHSNFVNCIRFSPDGS 203 (612)
Q Consensus 128 ~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~--~~~~~~~~~--~~~~~v~~~~~s~~~~ 203 (612)
.+.-..+.........++|...|.+++|+|++++++++++.||.|++||+. +++.+..+. .|...|.+++|+|+++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 162 (450)
T 2vdu_B 83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDT 162 (450)
T ss_dssp -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSS
T ss_pred cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCC
Confidence 000001111122234467888999999999999756999999999999999 888887776 5678999999999999
Q ss_pred eEEEEEcCCcEEEEecCCCCeee-eeeccCCccccEEEEEEecC---CCEEEEEeCCCcEEEEEeecCCCCCeeEeeeec
Q 007229 204 KLISVSSDRKGLIYDGKSGEKIG-EFSSEDGHHGSIYAVSWSPD---GKKVLTVSADKSAKVWEILEDGSGGRVIKTFAS 279 (612)
Q Consensus 204 ~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~~~~~v~~i~~~~~---~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 279 (612)
+|++++.+|.+++|++.+++... ......+|...|.+++|+|+ +++|++++.|+.|++||+ .+++.+..+
T Consensus 163 ~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~----~~~~~~~~~-- 236 (450)
T 2vdu_B 163 TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHY----PQCFIVDKW-- 236 (450)
T ss_dssp EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEE----SCTTCEEEE--
T ss_pred EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEEC----CCCceeeee--
Confidence 99999999999999998887654 11122478899999999999 999999999999999999 544433221
Q ss_pred cCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCC
Q 007229 280 STSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGV 359 (612)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~ 359 (612)
+.+|...|.+++|+ ++.+|++++.|+.|++||+.+
T Consensus 237 -------------------------------------------~~~h~~~v~~~~~s--d~~~l~s~~~d~~v~vwd~~~ 271 (450)
T 2vdu_B 237 -------------------------------------------LFGHKHFVSSICCG--KDYLLLSAGGDDKIFAWDWKT 271 (450)
T ss_dssp -------------------------------------------CCCCSSCEEEEEEC--STTEEEEEESSSEEEEEETTT
T ss_pred -------------------------------------------ecCCCCceEEEEEC--CCCEEEEEeCCCeEEEEECCC
Confidence 23466666666666 466666666666666666654
Q ss_pred ceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEee
Q 007229 360 GYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLD 439 (612)
Q Consensus 360 ~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (612)
++....
T Consensus 272 ~~~~~~-------------------------------------------------------------------------- 277 (450)
T 2vdu_B 272 GKNLST-------------------------------------------------------------------------- 277 (450)
T ss_dssp CCEEEE--------------------------------------------------------------------------
T ss_pred CcEeee--------------------------------------------------------------------------
Confidence 332111
Q ss_pred cccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEc-CCCeE
Q 007229 440 SLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASAD-GNREA 518 (612)
Q Consensus 440 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~d~~i 518 (612)
+.....+..+.+... ...... ...........|.+++|+|++++|++++ .|+.|
T Consensus 278 -------~~~~~~~~~~~~~~~-----------------~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i 332 (450)
T 2vdu_B 278 -------FDYNSLIKPYLNDQH-----------------LAPPRF-QNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCI 332 (450)
T ss_dssp -------EECHHHHGGGCCTTS-----------------BC-----------CBCCCEEEEEECSSSSEEEEEETTCSEE
T ss_pred -------ecchhhhhhhhhhcc-----------------cccccc-cccccccceEEEEEEEEeCCCCEEEEEECCCCeE
Confidence 000000000000000 000000 0000012345789999999999999998 89999
Q ss_pred EEEec--CCc---ceeeecccccccceeEEEecCCCcEEEEeec------CcEEEEEEccC
Q 007229 519 IVWDR--VSK---EVKLNNMLFHTARINCLAWSPSSTMVATGSI------DTCVIIYEIGK 568 (612)
Q Consensus 519 ~iwd~--~~~---~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~------d~~i~iwd~~~ 568 (612)
++|++ .++ +.+ ..+..| ..|.+++|+|++.++++++. +..|.+|.+..
T Consensus 333 ~iw~~~~~~~~~l~~~-~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 333 IILEMSEKQKGDLALK-QIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp EEEEECSSSTTCEEEE-EEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred EEEEeccCCCCceeec-cEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEc
Confidence 99999 544 333 445556 88999999996544444443 45589998875
No 116
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=3e-32 Score=263.38 Aligned_cols=356 Identities=13% Similarity=0.101 Sum_probs=258.7
Q ss_pred CCceeEEEEccCCCEEEEecCCEEEEEeCCCCceeeEeccCCCceEEEE---ECCCCCEEEE--------------eeCc
Q 007229 18 RGRGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTVAR---YSPNGEWIAS--------------ADVS 80 (612)
Q Consensus 18 ~~~v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~---~s~d~~~las--------------~~~d 80 (612)
...+..+.++|....++...+..+...- + -......+..++ |+|+++.++. ++.+
T Consensus 27 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~------~--~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (433)
T 3bws_A 27 GTEIVKFSIHPYKGTVIRLGEEILPFKV------L--EMDKNIALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEE 98 (433)
T ss_dssp CEEEEEEEEECCTTCEEEETTEECCEEE------E--EEETTEEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGG
T ss_pred CcEEEEEecccccCceEEcCceecceee------e--ecccCCccEEEEEeeccCCCcEEEEEEccccCcceeeecccCC
Confidence 3467788888876666655543221110 0 112334556666 7776665543 2344
Q ss_pred C--eEEEeecCCCce-eeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceee-----eeccCCceEEE
Q 007229 81 G--SVRIWGTHNGFV-LKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVG-----DFDGHSRRVLS 152 (612)
Q Consensus 81 ~--~i~iwd~~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~-----~~~~~~~~v~~ 152 (612)
+ .|..||..++.. ....+. ....+.+++|+|+++.+++++.++ .+.+|+.++++... .+.+|...|.+
T Consensus 99 ~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~~~~~~~~~---~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~ 174 (433)
T 3bws_A 99 LNEKLIALDKEGITHRFISRFK-TGFQPKSVRFIDNTRLAIPLLEDE---GMDVLDINSGQTVRLSPPEKYKKKLGFVET 174 (433)
T ss_dssp GTTCEEECCBTTCSEEEEEEEE-CSSCBCCCEESSSSEEEEEBTTSS---SEEEEETTTCCEEEECCCHHHHTTCCEEEE
T ss_pred CceEEEEECCCCCcceEEEEEc-CCCCceEEEEeCCCeEEEEeCCCC---eEEEEECCCCeEeeecCcccccccCCceeE
Confidence 4 444444443421 233333 344567999999666666655554 46788877888877 55689999999
Q ss_pred EEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEE-cCCcEEEEecCCCCeeeeeecc
Q 007229 153 CEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVS-SDRKGLIYDGKSGEKIGEFSSE 231 (612)
Q Consensus 153 ~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~ 231 (612)
++|+|++. ++++++.|+.|++||+.+++.+..+..|...+.+++|+|+++++++++ .|+.|++||+++++.+..+
T Consensus 175 ~~~~~~~~-~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~--- 250 (433)
T 3bws_A 175 ISIPEHNE-LWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKT--- 250 (433)
T ss_dssp EEEGGGTE-EEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEC---
T ss_pred EEEcCCCE-EEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEe---
Confidence 99999988 699999999999999999999988888999999999999999886555 7999999999999888877
Q ss_pred CCccccEEEEEEecCCCEEEEEe--------CCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEE
Q 007229 232 DGHHGSIYAVSWSPDGKKVLTVS--------ADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVS 303 (612)
Q Consensus 232 ~~~~~~v~~i~~~~~~~~l~~~~--------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (612)
.....+.+++|+|+++++++++ .||.|++||+ .+++.+..+
T Consensus 251 -~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~----~~~~~~~~~-------------------------- 299 (433)
T 3bws_A 251 -DKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSM----DKEKLIDTI-------------------------- 299 (433)
T ss_dssp -CCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEET----TTTEEEEEE--------------------------
T ss_pred -cCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEEC----CCCcEEeec--------------------------
Confidence 4456699999999999999888 4889999998 666554332
Q ss_pred cCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEE
Q 007229 304 LGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVI 383 (612)
Q Consensus 304 ~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l 383 (612)
.|...+..++|++....++++++.++.|++||+.+++......
T Consensus 300 ---------------------~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~---------------- 342 (433)
T 3bws_A 300 ---------------------GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP---------------- 342 (433)
T ss_dssp ---------------------EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE----------------
T ss_pred ---------------------cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec----------------
Confidence 1334566777774333566777899999999988665432211
Q ss_pred EEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCC
Q 007229 384 FTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGS 463 (612)
Q Consensus 384 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 463 (612)
+...+.+++|+|+++
T Consensus 343 -----------------------------------------------------------------~~~~~~~~~~s~dg~ 357 (433)
T 3bws_A 343 -----------------------------------------------------------------VFDKPNTIALSPDGK 357 (433)
T ss_dssp -----------------------------------------------------------------CSSSEEEEEECTTSS
T ss_pred -----------------------------------------------------------------CCCCCCeEEEcCCCC
Confidence 223467888999998
Q ss_pred eEEEEec---------------CCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcC-CCeEEEEecCC
Q 007229 464 EAIVGGQ---------------NGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADG-NREAIVWDRVS 525 (612)
Q Consensus 464 ~l~~~~~---------------dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-d~~i~iwd~~~ 525 (612)
++++++. ||.|++||+.+++. ...+.. ...+.+++|+|++++|++++. |+.|++|+++.
T Consensus 358 ~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~--~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 358 YLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTV--KEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp EEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEE--EEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred EEEEEecCCCccccccccccccceEEEEEECCCCcE--EEEecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 8888776 57999999998876 344444 457899999999999988765 99999999864
No 117
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=1.1e-33 Score=271.69 Aligned_cols=243 Identities=20% Similarity=0.238 Sum_probs=212.0
Q ss_pred CCCCceeEEEEccC-CCEEEEec-CCEEEEEeCCC----------CceeeEeccCCCceEEEEECCCCC-EEEEeeCcCe
Q 007229 16 TERGRGILISGNPK-TDTILYCN-GRSVLIRYLDK----------PLHVEFYGEHGYPVTVARYSPNGE-WIASADVSGS 82 (612)
Q Consensus 16 ~~~~~v~~~~~s~d-~~~l~~~~-~~~i~i~~~~~----------~~~~~~~~~h~~~v~~~~~s~d~~-~las~~~d~~ 82 (612)
.|.+.|++++|+|+ +++||+++ ++.|++||+.+ .+.+..+.+|...|.+++|+|+++ +|++|+.||.
T Consensus 126 ~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 205 (430)
T 2xyi_A 126 NHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHT 205 (430)
T ss_dssp EESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSC
T ss_pred cCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCe
Confidence 46789999999998 67888887 79999999986 577788899999999999999998 9999999999
Q ss_pred EEEeecCCCce------eeeeeeecCCCeEEEEECC-CCCEEEEEeCCCCeeeEEEEEecCC---ceeeeeccCCceEEE
Q 007229 83 VRIWGTHNGFV------LKNEFKVLSGRIDDLQWSP-DGLRIVACGDGKGKSFVRAFMWDSG---TTVGDFDGHSRRVLS 152 (612)
Q Consensus 83 i~iwd~~~~~~------~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~~~~~~~i~i~~~~~~---~~~~~~~~~~~~v~~ 152 (612)
|++||+.++.. ....+..|...|.+++|+| ++..|++++.++ .+++|+..++ +.+..+..|...|.+
T Consensus 206 i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~v~~ 282 (430)
T 2xyi_A 206 ICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQ---KLMIWDTRNNNTSKPSHTVDAHTAEVNC 282 (430)
T ss_dssp EEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTS---EEEEEETTCSCSSSCSEEEECCSSCEEE
T ss_pred EEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCC---eEEEEECCCCCCCcceeEeecCCCCeEE
Confidence 99999987432 1345668999999999999 677888888887 5777777765 677888899999999
Q ss_pred EEEcCCCCEEEEEeecCCeEEEEeCCC-CeeeecccccccceEEEEECCCCC-eEEEEEcCCcEEEEecCCC--------
Q 007229 153 CEFKPTRPFRIATCGEDFLVNFYEGPP-FKFKLSHREHSNFVNCIRFSPDGS-KLISVSSDRKGLIYDGKSG-------- 222 (612)
Q Consensus 153 ~~~~~~~~~~l~~~~~d~~i~~wd~~~-~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~-------- 222 (612)
++|+|++++++++|+.||.|++||+++ ...+..+..|...|.+++|+|+++ +|++++.|+.|++||+...
T Consensus 283 i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 362 (430)
T 2xyi_A 283 LSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTED 362 (430)
T ss_dssp EEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHH
T ss_pred EEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccc
Confidence 999999987899999999999999998 566777889999999999999985 6899999999999999872
Q ss_pred ------CeeeeeeccCCccccEEEEEEecCCC-EEEEEeCCCcEEEEEe
Q 007229 223 ------EKIGEFSSEDGHHGSIYAVSWSPDGK-KVLTVSADKSAKVWEI 264 (612)
Q Consensus 223 ------~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~~~dg~i~iw~~ 264 (612)
+.+..+ .+|...|.+++|+|+++ ++++++.||.|++|++
T Consensus 363 ~~~~~~~~~~~~---~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~ 408 (430)
T 2xyi_A 363 AEDGPPELLFIH---GGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 408 (430)
T ss_dssp HHHCCTTEEEEC---CCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEE
T ss_pred cccCCcceEEEc---CCCCCCceEEEECCCCCCEEEEEECCCCEEEeEc
Confidence 344444 47889999999999999 8999999999999999
No 118
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=3.5e-32 Score=259.04 Aligned_cols=306 Identities=15% Similarity=0.133 Sum_probs=235.5
Q ss_pred EEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeE-EEEEcCCcEEEEecCCCCeeeeeeccCCccccEE
Q 007229 161 FRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKL-ISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIY 239 (612)
Q Consensus 161 ~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~ 239 (612)
+++++++.|+.|++||+.+++.+..+..|. .+.+++|+|++++| ++++.|+.|++||+.+++.+..+ .+...+.
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~----~~~~~v~ 77 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATV----PAGSSPQ 77 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEE----ECSSSEE
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEE----ECCCCcc
Confidence 579999999999999999999998887765 48999999999987 56668999999999999998888 3444899
Q ss_pred EEEEecCCCEEEEEe-CCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCC
Q 007229 240 AVSWSPDGKKVLTVS-ADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDK 318 (612)
Q Consensus 240 ~i~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 318 (612)
+++|+|+++++++++ .++.|++||+ .+++.+..+.
T Consensus 78 ~~~~spdg~~l~~~~~~~~~v~v~d~----~~~~~~~~~~---------------------------------------- 113 (391)
T 1l0q_A 78 GVAVSPDGKQVYVTNMASSTLSVIDT----TSNTVAGTVK---------------------------------------- 113 (391)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEET----TTTEEEEEEE----------------------------------------
T ss_pred ceEECCCCCEEEEEECCCCEEEEEEC----CCCeEEEEEe----------------------------------------
Confidence 999999999886555 5699999999 7666654433
Q ss_pred CceeecCcccceeEEEEEecCCcEE-EEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEec
Q 007229 319 APLSFSGHVKNVSTLTALKISQQTI-LSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPL 397 (612)
Q Consensus 319 ~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~ 397 (612)
+...+.+++|++. ++.+ ++++.++.|++||+.+++......
T Consensus 114 -------~~~~~~~~~~s~d-g~~l~~~~~~~~~v~~~d~~~~~~~~~~~------------------------------ 155 (391)
T 1l0q_A 114 -------TGKSPLGLALSPD-GKKLYVTNNGDKTVSVINTVTKAVINTVS------------------------------ 155 (391)
T ss_dssp -------CSSSEEEEEECTT-SSEEEEEETTTTEEEEEETTTTEEEEEEE------------------------------
T ss_pred -------CCCCcceEEECCC-CCEEEEEeCCCCEEEEEECCCCcEEEEEe------------------------------
Confidence 2234677778743 4544 788889999999988765433221
Q ss_pred CCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeE-EEEecCCeEEE
Q 007229 398 CEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEA-IVGGQNGKLHI 476 (612)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l-~~~~~dg~v~i 476 (612)
....+.+++|+|+++++ ++++.++.|++
T Consensus 156 ---------------------------------------------------~~~~~~~~~~~~dg~~l~~~~~~~~~v~~ 184 (391)
T 1l0q_A 156 ---------------------------------------------------VGRSPKGIAVTPDGTKVYVANFDSMSISV 184 (391)
T ss_dssp ---------------------------------------------------CCSSEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred ---------------------------------------------------cCCCcceEEECCCCCEEEEEeCCCCEEEE
Confidence 11246789999999988 56778899999
Q ss_pred EEccCcccccceeeccccCceEEEEEcCCCcEEEEEc---CCCeEEEEecCCcceeeecccccccceeEEEecCCCcEE-
Q 007229 477 YSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASAD---GNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMV- 552 (612)
Q Consensus 477 ~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l- 552 (612)
||+.+++. ...+ .+...+.+++|+|++++|++++ .++.|++||+.+++.+ ..+..|. .+.+++|+|++++|
T Consensus 185 ~d~~~~~~--~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~~-~~~~~~~s~dg~~l~ 259 (391)
T 1l0q_A 185 IDTVTNSV--IDTV-KVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKIT-ARIPVGP-DPAGIAVTPDGKKVY 259 (391)
T ss_dssp EETTTTEE--EEEE-ECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEE-EEEECCS-SEEEEEECTTSSEEE
T ss_pred EECCCCeE--EEEE-ecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEE-EEEecCC-CccEEEEccCCCEEE
Confidence 99998876 3333 3556789999999999999888 6899999999998876 3444444 57899999999977
Q ss_pred EEeecCcEEEEEEccCCCcceeeeecccccCee---------------eEEEe-cC----------ceEEEccCCCeEEE
Q 007229 553 ATGSIDTCVIIYEIGKPASSRITIKNAHLGGVY---------------GVAFM-DD----------FNVVSSGEDACIRV 606 (612)
Q Consensus 553 ~s~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~---------------~~~~~-~~----------~~l~s~~~d~~i~~ 606 (612)
++++.|+.|++||+.+ + +.+..+..|..+.. ...|+ +. -.+...+.|..+++
T Consensus 260 ~s~~~d~~v~v~d~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (391)
T 1l0q_A 260 VALSFXNTVSVIDTAT-N-TITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWK 337 (391)
T ss_dssp EEETTTTEEEEEETTT-T-EEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEE
T ss_pred EEcCCCCEEEEEECCC-C-cEEEEEECCcCCCccceeeecccccccccccccccccccccccccceEEEEeCCCCceEEE
Confidence 6778899999999998 5 66666665544321 12233 21 24666778999999
Q ss_pred EEecc
Q 007229 607 WRLAT 611 (612)
Q Consensus 607 w~~~~ 611 (612)
|++..
T Consensus 338 W~~~~ 342 (391)
T 1l0q_A 338 WDFGD 342 (391)
T ss_dssp EECSS
T ss_pred EECCC
Confidence 99864
No 119
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=100.00 E-value=2e-33 Score=246.32 Aligned_cols=298 Identities=12% Similarity=0.018 Sum_probs=202.1
Q ss_pred ceeEEEEccCCC---EEEEecCCEEEEEeCCCC---ceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCce
Q 007229 20 RGILISGNPKTD---TILYCNGRSVLIRYLDKP---LHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFV 93 (612)
Q Consensus 20 ~v~~~~~s~d~~---~l~~~~~~~i~i~~~~~~---~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~ 93 (612)
.++++-|-.-|- -|++++...|.+|+..++ +.++.+.+|+.+|..++++||..-|+...- +
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-----------~-- 107 (356)
T 2w18_A 41 DVSAMFWERAGCKEPCIITACEDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVAL-----------G-- 107 (356)
T ss_dssp EEEEEEEC----CEEEEEEEESSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEE-----------C--
T ss_pred EEeeeeeccCCCCccEEEEeccceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeee-----------c--
Confidence 345555544444 677788999999999999 888999999999999999998643332211 0
Q ss_pred eeeeeeecCCCeEEEEECCC----CCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEee--
Q 007229 94 LKNEFKVLSGRIDDLQWSPD----GLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCG-- 167 (612)
Q Consensus 94 ~~~~~~~~~~~i~~~~~s~~----~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-- 167 (612)
.-+...|..++|+|| ++++++++.+ +.+|.+.+++ ++.+++
T Consensus 108 -----~~~~~~v~sla~spd~~~~~~~l~s~g~~-----~~v~~l~~g~-----------------------lv~ss~~g 154 (356)
T 2w18_A 108 -----NLEIREIRALFCSSDDESEKQVLLKSGNI-----KAVLGLTKRR-----------------------LVSSSGTL 154 (356)
T ss_dssp -----SSSEEEEEEECC------CCEEEEEEEEE-----EEEEEETTTE-----------------------EEEEESSS
T ss_pred -----cccccceEEEEECCCccccccEEEeCCCe-----EEEEecCCCc-----------------------EEEecccC
Confidence 113347899999999 9999997743 3455433333 333322
Q ss_pred cCCeEEEEeC-CCCeeeecccccccceEEEEECC---CCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEE
Q 007229 168 EDFLVNFYEG-PPFKFKLSHREHSNFVNCIRFSP---DGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSW 243 (612)
Q Consensus 168 ~d~~i~~wd~-~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~ 243 (612)
.|+.|++|++ +.++.+..+.+|...+..++|+| ++.+|++++.|++|+|||+++|+.+..+.....+...+.+++|
T Consensus 155 ~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vaf 234 (356)
T 2w18_A 155 SDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAY 234 (356)
T ss_dssp TTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEE
T ss_pred CCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEE
Confidence 4666777776 33666667778999999999999 7799999999999999999999999998421123456788899
Q ss_pred ecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceee
Q 007229 244 SPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSF 323 (612)
Q Consensus 244 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 323 (612)
+|+|+++++++.+.. +|+
T Consensus 235 SpdG~~lvs~s~~~~--~w~------------------------------------------------------------ 252 (356)
T 2w18_A 235 SEMGLLFIVLSHPCA--KES------------------------------------------------------------ 252 (356)
T ss_dssp EETTEEEEEEC---------------------------------------------------------------------
T ss_pred CCCCCEEEEeccCCC--cce------------------------------------------------------------
Confidence 999999888775432 243
Q ss_pred cCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCC
Q 007229 324 SGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECG 403 (612)
Q Consensus 324 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~ 403 (612)
+++|+.|++|++||..+++...... +.++.+.
T Consensus 253 -------------------laSGs~D~tIklWd~~tgk~l~v~~---------------------------~~~p~Gh-- 284 (356)
T 2w18_A 253 -------------------ESLRSPVFQLIVINPKTTLSVGVML---------------------------YCLPPGQ-- 284 (356)
T ss_dssp ------------------------CCEEEEEEETTTTEEEEEEE---------------------------ECCCTTC--
T ss_pred -------------------eeccCCCcEEEEEECCCCEEEEEEE---------------------------eeccCCC--
Confidence 3466677778888777665432210 0000000
Q ss_pred ccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcc
Q 007229 404 DAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNT 483 (612)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~ 483 (612)
...+.+..+ ++.++|+|+.|++|+|||+.+++
T Consensus 285 ----------------------------------------------~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk 316 (356)
T 2w18_A 285 ----------------------------------------------AGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQ 316 (356)
T ss_dssp ----------------------------------------------CCCEEEEEE--ETTEEEEEETTSCEEEEETTTCS
T ss_pred ----------------------------------------------cceeEcccc--CCCEEEEEcCCCcEEEEECCCCc
Confidence 001222223 37889999999999999999998
Q ss_pred cccceeeccccCceE-EEEEcCCCcEEEEEcCCCeEEEEec
Q 007229 484 LTEEMVLEKHRGAIT-VIQYSPDVSMFASADGNREAIVWDR 523 (612)
Q Consensus 484 ~~~~~~~~~~~~~i~-~~~~s~~~~~l~~~~~d~~i~iwd~ 523 (612)
. ..++.+|...+. .++|+|||++|++|+.|++|+|||+
T Consensus 317 ~--l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 317 C--TALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp E--EEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred E--EEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 7 677888887655 6899999999999999999999995
No 120
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=1.9e-32 Score=255.39 Aligned_cols=285 Identities=16% Similarity=0.187 Sum_probs=212.3
Q ss_pred CCCCCceeEEEEccCCCEEEEecCCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEE-EeeCcCeEEEeecCCCce
Q 007229 15 STERGRGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIA-SADVSGSVRIWGTHNGFV 93 (612)
Q Consensus 15 ~~~~~~v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~la-s~~~d~~i~iwd~~~~~~ 93 (612)
..|.+.|.+++|||||++||+++++.++|||+++++...... ...+..+++++++++++ +++.|++|+|||..+++.
T Consensus 16 ~~h~~~V~~v~fs~dg~~la~g~~~~~~iw~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~ 93 (355)
T 3vu4_A 16 NHVSNPVTDYEFNQDQSCLILSTLKSFEIYNVHPVAHIMSQE--MRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQD 93 (355)
T ss_dssp ---CCCCCEEEECTTSSEEEEECSSEEEEEEETTEEEEEEEE--CSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEE
T ss_pred ccCCCceEEEEECCCCCEEEEEcCCEEEEEecCCcceeeeee--cCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcE
Confidence 357889999999999999999998889999999876655433 23588999999998885 677889999999999984
Q ss_pred eeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCC-ceeeeeccCCceEEEEEEcCCCCEEEEE-eecCCe
Q 007229 94 LKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSG-TTVGDFDGHSRRVLSCEFKPTRPFRIAT-CGEDFL 171 (612)
Q Consensus 94 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~-~~~d~~ 171 (612)
+. .+. +...|.+++|+++. ++++.++ .+++|+..++ +.+..+.. +...+++++ .+++++ |+.||.
T Consensus 94 ~~-~~~-~~~~v~~v~~~~~~--~~~~~~~----~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg~~~g~ 160 (355)
T 3vu4_A 94 VS-RIK-VDAPVKDLFLSREF--IVVSYGD----VISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNEFNLGQ 160 (355)
T ss_dssp EE-EEE-CSSCEEEEEECSSE--EEEEETT----EEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEESSCTTC
T ss_pred EE-EEE-CCCceEEEEEcCCE--EEEEEcC----EEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCCCcCcE
Confidence 43 444 67799999999874 4445443 4677877777 77766665 555667777 433443 789999
Q ss_pred EEEEeCCCCe----------------eeecccccccceEEEEECCCCCeEEEEEcCCc-EEEEecCCCCeeeeeeccCC-
Q 007229 172 VNFYEGPPFK----------------FKLSHREHSNFVNCIRFSPDGSKLISVSSDRK-GLIYDGKSGEKIGEFSSEDG- 233 (612)
Q Consensus 172 i~~wd~~~~~----------------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-i~vwd~~~~~~~~~~~~~~~- 233 (612)
|++||+.+++ .+..+.+|..+|.+++|+|++++|++++.|++ |++||+++++.+..+. .+
T Consensus 161 v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~--~g~ 238 (355)
T 3vu4_A 161 IHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFR--RGL 238 (355)
T ss_dssp EEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEE--CTT
T ss_pred EEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEE--cCC
Confidence 9999999865 26678899999999999999999999999998 9999999999998882 13
Q ss_pred ccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeE----------------eeeeccCccccceeeeeeeccCC
Q 007229 234 HHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVI----------------KTFASSTSNAVEDMLVGCLWQND 297 (612)
Q Consensus 234 ~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~ 297 (612)
|...|.+++|+|++++|++++.|+.|++||+.......... ..+.............+...+++
T Consensus 239 h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~ 318 (355)
T 3vu4_A 239 DRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESS 318 (355)
T ss_dssp CCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSE
T ss_pred CCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCC
Confidence 89999999999999999999999999999994321111000 00001100000112222233366
Q ss_pred EEEEEEcCCEEEEEEcCCC
Q 007229 298 HLITVSLGGIISIFSASNL 316 (612)
Q Consensus 298 ~~~~~~~~~~i~~~~~~~~ 316 (612)
.+++++.+|.+.+|++...
T Consensus 319 ~l~~~~~dg~~~~~~~~~~ 337 (355)
T 3vu4_A 319 LVVVWPHTRMIETFKVVFD 337 (355)
T ss_dssp EEEEETTTTEEEEEEEEEE
T ss_pred EEEEEeCCCeEEEEEEEcC
Confidence 8999999999999986543
No 121
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=1.2e-33 Score=267.53 Aligned_cols=285 Identities=13% Similarity=0.048 Sum_probs=182.5
Q ss_pred CCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeee-----ecccccccceEEEEECC--------CCCeEEEEEcCC
Q 007229 146 HSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFK-----LSHREHSNFVNCIRFSP--------DGSKLISVSSDR 212 (612)
Q Consensus 146 ~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~-----~~~~~~~~~v~~~~~s~--------~~~~l~~~~~dg 212 (612)
|...+....+++++. ++++++.|++|++||..+++.. ..+.+|.+.|.+++|+| |+++|++++.|+
T Consensus 88 ~~~~~~~~~~~~~~~-~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~ 166 (393)
T 4gq1_A 88 HDGDGNVNSSPVYSL-FLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDC 166 (393)
T ss_dssp ---------CCEEEE-EEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTS
T ss_pred cCCCcceeecCCCCC-EEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCC
Confidence 444445555666665 6999999999999999887643 45789999999999998 889999999999
Q ss_pred cEEEEecCCCCeeeeeeccCCccccEEEEEEecCCC-EEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeee
Q 007229 213 KGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGK-KVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVG 291 (612)
Q Consensus 213 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (612)
+|+|||+.++.....+ ..|..++.+++|+|++. +|++++.||+|++||+ .+++............. .....
T Consensus 167 tv~~Wd~~~~~~~~~~---~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~----~t~~~~~~~~~~~~~~~-~~~~s 238 (393)
T 4gq1_A 167 TLIIWRLTDEGPILAG---YPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDW----TLNLSAEENSQTELVKN-PWLLT 238 (393)
T ss_dssp EEEEEEEETTEEEEEE---EECSSCEEEEEEETTEEEEEEEEETTSEEEEEET----TCCC----------CSC-CCSEE
T ss_pred eEEEEECCCCceeeee---cCCCCCcEEEEECCCCCceEEecCCCCEEEEEEC----CCCcccccccccCCccc-ceEEe
Confidence 9999999888776666 27889999999999874 7999999999999999 66655443332211000 00000
Q ss_pred eeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceeccc
Q 007229 292 CLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDA 371 (612)
Q Consensus 292 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~ 371 (612)
. + ...........+|...+.++.|...++..+++++.|+.+++||+..++.......+..
T Consensus 239 ~-------------------~-~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~ 298 (393)
T 4gq1_A 239 L-------------------N-TLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTM 298 (393)
T ss_dssp E-------------------E-SGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC--------------
T ss_pred c-------------------c-cccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecC
Confidence 0 0 0001111234578889999999966699999999999999999987765544333333
Q ss_pred ceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccc
Q 007229 372 RIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGF 451 (612)
Q Consensus 372 ~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (612)
.+..+.+..+. +......
T Consensus 299 ~~~~~~~~~~~--------------------------------------------------------------~~~~~~~ 316 (393)
T 4gq1_A 299 KLGPKNLLPNV--------------------------------------------------------------QGISLFP 316 (393)
T ss_dssp -----CCSCSE--------------------------------------------------------------EEECSSC
T ss_pred ccccEEEcccc--------------------------------------------------------------ccccccC
Confidence 33222221100 0000001
Q ss_pred eEEEEEEcc--CCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecC
Q 007229 452 TVTACAIAP--DGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRV 524 (612)
Q Consensus 452 ~i~~~~~s~--~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~ 524 (612)
......++| ++.++++|+.||.|++||+.+++. ...+..|..+|++++|+|||++||+++.+| +.+|.+.
T Consensus 317 ~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~--~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 317 SLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDS--NSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp CSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTC--CEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred cceeEEEccCCCCEEEEEECCCCEEEEEECCCCcE--EEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence 112223333 455677888999999999998876 566778899999999999999999998765 6666654
No 122
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=6.7e-33 Score=266.13 Aligned_cols=266 Identities=19% Similarity=0.265 Sum_probs=213.0
Q ss_pred eEeccCCCceEEEEECCC-CCEEEEeeCcCeEEEeecCC----------CceeeeeeeecCCCeEEEEECCCCC-EEEEE
Q 007229 53 EFYGEHGYPVTVARYSPN-GEWIASADVSGSVRIWGTHN----------GFVLKNEFKVLSGRIDDLQWSPDGL-RIVAC 120 (612)
Q Consensus 53 ~~~~~h~~~v~~~~~s~d-~~~las~~~d~~i~iwd~~~----------~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~ 120 (612)
....+|.+.|++++|+|+ +++||+++.||.|++||+.+ .. ....+.+|...|.+++|+|+++ +|+++
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~-~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 200 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQ-PDLRLRGHQKEGYGLSWNPNLNGYLLSA 200 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCC-CSEEEECCSSCCCCEEECTTSTTEEEEE
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCC-CcEEecCCCCCeEEEEeCCCCCCeEEEE
Confidence 345679999999999997 78999999999999999986 33 4557889999999999999998 89999
Q ss_pred eCCCCeeeEEEEEecCCce-------eeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCC---eeeecccccc
Q 007229 121 GDGKGKSFVRAFMWDSGTT-------VGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPF---KFKLSHREHS 190 (612)
Q Consensus 121 ~~~~~~~~i~i~~~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~---~~~~~~~~~~ 190 (612)
+.++ .+.+|+.+.+.. ...+.+|...|.+++|+|++..++++++.|+.|++||++++ +....+..|.
T Consensus 201 ~~dg---~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 277 (430)
T 2xyi_A 201 SDDH---TICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHT 277 (430)
T ss_dssp CTTS---CEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCS
T ss_pred eCCC---eEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCC
Confidence 8887 467777775322 45677999999999999955557999999999999999987 4666677899
Q ss_pred cceEEEEECCCCC-eEEEEEcCCcEEEEecCC-CCeeeeeeccCCccccEEEEEEecCCC-EEEEEeCCCcEEEEEeecC
Q 007229 191 NFVNCIRFSPDGS-KLISVSSDRKGLIYDGKS-GEKIGEFSSEDGHHGSIYAVSWSPDGK-KVLTVSADKSAKVWEILED 267 (612)
Q Consensus 191 ~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~~~dg~i~iw~~~~~ 267 (612)
..|.+++|+|+++ ++++++.||.|++||+++ ++.+..+ ..|...|.+++|+|+++ +|++++.||.|++||+.
T Consensus 278 ~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~---~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~-- 352 (430)
T 2xyi_A 278 AEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF---ESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS-- 352 (430)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEE---ECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGG--
T ss_pred CCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEe---ecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCC--
Confidence 9999999999987 688999999999999998 4556666 37899999999999985 68999999999999993
Q ss_pred CCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEe
Q 007229 268 GSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSS 347 (612)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 347 (612)
............ ...........+|...|.+++|++....++++++
T Consensus 353 --~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s 398 (430)
T 2xyi_A 353 --KIGEEQSTEDAE--------------------------------DGPPELLFIHGGHTAKISDFSWNPNEPWIICSVS 398 (430)
T ss_dssp --GTTCCCCHHHHH--------------------------------HCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEE
T ss_pred --CCccccCccccc--------------------------------cCCcceEEEcCCCCCCceEEEECCCCCCEEEEEE
Confidence 311110000000 0111233455678999999999954344999999
Q ss_pred cCCcEEEEEcCCce
Q 007229 348 YDGAIIKWIRGVGY 361 (612)
Q Consensus 348 ~dg~i~~wd~~~~~ 361 (612)
.||.|++|++....
T Consensus 399 ~dg~i~iw~~~~~~ 412 (430)
T 2xyi_A 399 EDNIMQVWQMAENV 412 (430)
T ss_dssp TTSEEEEEEECHHH
T ss_pred CCCCEEEeEccccc
Confidence 99999999987543
No 123
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=100.00 E-value=2.7e-32 Score=239.21 Aligned_cols=276 Identities=14% Similarity=0.069 Sum_probs=203.0
Q ss_pred EEEEeecCCeEEEEeCCCC---eeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccE
Q 007229 162 RIATCGEDFLVNFYEGPPF---KFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSI 238 (612)
Q Consensus 162 ~l~~~~~d~~i~~wd~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v 238 (612)
.+++++ ...|++|+...+ +.++++.+|+.+|..+.+.||..-|+...-. +-+...|
T Consensus 56 ~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--------------------~~~~~~v 114 (356)
T 2w18_A 56 CIITAC-EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALG--------------------NLEIREI 114 (356)
T ss_dssp EEEEEE-SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEEC--------------------SSSEEEE
T ss_pred EEEEec-cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeec--------------------cccccce
Confidence 355555 458999999888 8999999999999999999987666554321 1355678
Q ss_pred EEEEEecC----CCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcC
Q 007229 239 YAVSWSPD----GKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSAS 314 (612)
Q Consensus 239 ~~i~~~~~----~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 314 (612)
.+++|+|| ++++++++.+ +++|++ .+++.+.... .+.++.|++|++.
T Consensus 115 ~sla~spd~~~~~~~l~s~g~~--~~v~~l----~~g~lv~ss~-----------------------~g~d~~V~~~~~s 165 (356)
T 2w18_A 115 RALFCSSDDESEKQVLLKSGNI--KAVLGL----TKRRLVSSSG-----------------------TLSDQQVEVMTFA 165 (356)
T ss_dssp EEECC------CCEEEEEEEEE--EEEEEE----TTTEEEEEES-----------------------SSTTCEEEEEEEC
T ss_pred EEEEECCCccccccEEEeCCCe--EEEEec----CCCcEEEecc-----------------------cCCCCcEEEEEEC
Confidence 99999999 9999998754 888988 5554443211 0148899999997
Q ss_pred CCCCCceeecCcccceeEEEEE--ecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeE
Q 007229 315 NLDKAPLSFSGHVKNVSTLTAL--KISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKV 392 (612)
Q Consensus 315 ~~~~~~~~~~~~~~~v~~~~~~--~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i 392 (612)
...+....+.+|...+..++|+ +.++..|++++.|++|++||+.+++.......+...+
T Consensus 166 ~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v------------------- 226 (356)
T 2w18_A 166 EDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQ------------------- 226 (356)
T ss_dssp TTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC----------------------
T ss_pred CCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcce-------------------
Confidence 7777778888999999998888 4567999999999999999999988766543211110
Q ss_pred EEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeE-------
Q 007229 393 WRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEA------- 465 (612)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l------- 465 (612)
..+.+++|+|+|+++
T Consensus 227 ----------------------------------------------------------~~v~~vafSpdG~~lvs~s~~~ 248 (356)
T 2w18_A 227 ----------------------------------------------------------ASVCHKAYSEMGLLFIVLSHPC 248 (356)
T ss_dssp ----------------------------------------------------------CCCEEEEEEETTEEEEEEC---
T ss_pred ----------------------------------------------------------eeeEEEEECCCCCEEEEeccCC
Confidence 124455666666554
Q ss_pred -----EEEecCCeEEEEEccCccccccee---eccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccccc
Q 007229 466 -----IVGGQNGKLHIYSISGNTLTEEMV---LEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHT 537 (612)
Q Consensus 466 -----~~~~~dg~v~i~d~~~~~~~~~~~---~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 537 (612)
++|+.|++|++||..+++...... ..+|...+.+..+ ++.++|+++.|++|+|||+.+++.+ ..+.+|.
T Consensus 249 ~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l-~tL~gH~ 325 (356)
T 2w18_A 249 AKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCT-ALLPPVS 325 (356)
T ss_dssp ---------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEE-EEECCC-
T ss_pred CcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEE-EEecCCC
Confidence 678899999999999887632221 1466666554444 4789999999999999999999987 5677787
Q ss_pred ccee-EEEecCCCcEEEEeecCcEEEEEEcc
Q 007229 538 ARIN-CLAWSPSSTMVATGSIDTCVIIYEIG 567 (612)
Q Consensus 538 ~~i~-~~~~s~~~~~l~s~~~d~~i~iwd~~ 567 (612)
..+. +++|+|||++|++|+.|++|+|||+.
T Consensus 326 ~~vvs~vafSPDG~~LaSGS~D~TIklWd~~ 356 (356)
T 2w18_A 326 DQHWSFVKWSGTDSHLLAGQKDGNIFVYHYS 356 (356)
T ss_dssp -CCCCEEEECSSSSEEEEECTTSCEEEEEEC
T ss_pred CCeEEEEEECCCCCEEEEEECCCcEEEecCC
Confidence 7655 58999999999999999999999963
No 124
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-33 Score=289.47 Aligned_cols=247 Identities=21% Similarity=0.307 Sum_probs=214.0
Q ss_pred CCCCCCceeEEEEccCCCEEEEec-CCEEEEEeCC--CCceeeEeccCCCceEEEEECCC--CCEEEEeeCcCeEEEeec
Q 007229 14 PSTERGRGILISGNPKTDTILYCN-GRSVLIRYLD--KPLHVEFYGEHGYPVTVARYSPN--GEWIASADVSGSVRIWGT 88 (612)
Q Consensus 14 ~~~~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~--~~~~~~~~~~h~~~v~~~~~s~d--~~~las~~~d~~i~iwd~ 88 (612)
...|.+.|++++|+|+|++|++++ +|.|+|||+. +++....+.+|.+.|++++|+|+ +++|++|+.||.|++||+
T Consensus 5 l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~ 84 (753)
T 3jro_A 5 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKE 84 (753)
T ss_dssp ---CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEE
T ss_pred cccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEEC
Confidence 457889999999999999999997 8999999998 55677789999999999999998 999999999999999999
Q ss_pred CCCce-eeeeeeecCCCeEEEEECCC--CCEEEEEeCCCCeeeEEEEEecCC--ceeeeeccCCceEEEEEEcC------
Q 007229 89 HNGFV-LKNEFKVLSGRIDDLQWSPD--GLRIVACGDGKGKSFVRAFMWDSG--TTVGDFDGHSRRVLSCEFKP------ 157 (612)
Q Consensus 89 ~~~~~-~~~~~~~~~~~i~~~~~s~~--~~~l~~~~~~~~~~~i~i~~~~~~--~~~~~~~~~~~~v~~~~~~~------ 157 (612)
.+++. ....+..|...|.+++|+|+ ++.+++++.++ .+++|+...+ .....+.+|...|.+++|+|
T Consensus 85 ~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg---~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~ 161 (753)
T 3jro_A 85 ENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDG---KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 161 (753)
T ss_dssp ETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS---EEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC----
T ss_pred CCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCC---cEEEEEeecCCCcceeEeecCCCceEEEEecCcccccc
Confidence 98752 34467789999999999999 99999999988 5778877765 34556789999999999999
Q ss_pred -------CCCEEEEEeecCCeEEEEeCCCC----eeeecccccccceEEEEECCC---CCeEEEEEcCCcEEEEecCCCC
Q 007229 158 -------TRPFRIATCGEDFLVNFYEGPPF----KFKLSHREHSNFVNCIRFSPD---GSKLISVSSDRKGLIYDGKSGE 223 (612)
Q Consensus 158 -------~~~~~l~~~~~d~~i~~wd~~~~----~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~dg~i~vwd~~~~~ 223 (612)
++. .+++|+.||.|++||+.++ .....+.+|..+|.+++|+|+ +++|++++.||.|++||+.+++
T Consensus 162 ~~~~~~~d~~-~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~ 240 (753)
T 3jro_A 162 GEHNGTKESR-KFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ 240 (753)
T ss_dssp -----CGGGC-CEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSS
T ss_pred cccccCCCCC-EEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCC
Confidence 466 5999999999999998876 556678899999999999999 8999999999999999998874
Q ss_pred eee--eeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEe
Q 007229 224 KIG--EFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 224 ~~~--~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~ 264 (612)
... .......|...|.+++|+|+++++++++.||.|++|++
T Consensus 241 ~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~ 283 (753)
T 3jro_A 241 GPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE 283 (753)
T ss_dssp SCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBC
T ss_pred CcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEec
Confidence 221 11112368889999999999999999999999999999
No 125
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-33 Score=287.17 Aligned_cols=260 Identities=18% Similarity=0.215 Sum_probs=213.1
Q ss_pred eeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCce-eeeeeeecCCCeEEEEECCC--CCEEEEEeCCCCeee
Q 007229 52 VEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFV-LKNEFKVLSGRIDDLQWSPD--GLRIVACGDGKGKSF 128 (612)
Q Consensus 52 ~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~-~~~~~~~~~~~i~~~~~s~~--~~~l~~~~~~~~~~~ 128 (612)
+..+.+|.+.|++++|+|+|++||+|+.||.|+|||+.++.. ....+.+|.+.|.+++|+|+ +++|++++.++ .
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg---~ 78 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG---K 78 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTS---C
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCC---e
Confidence 345789999999999999999999999999999999984322 55678899999999999998 99999999998 5
Q ss_pred EEEEEecCCc--eeeeeccCCceEEEEEEcCC--CCEEEEEeecCCeEEEEeCCCCe--eeecccccccceEEEEECC--
Q 007229 129 VRAFMWDSGT--TVGDFDGHSRRVLSCEFKPT--RPFRIATCGEDFLVNFYEGPPFK--FKLSHREHSNFVNCIRFSP-- 200 (612)
Q Consensus 129 i~i~~~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~--~~~~~~~~~~~v~~~~~s~-- 200 (612)
+++|+.++++ .+..+.+|...|.+++|+|+ +. .+++|+.||.|++||+.++. ....+.+|...|.+++|+|
T Consensus 79 I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~-~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~ 157 (753)
T 3jro_A 79 VLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGP-LLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPAT 157 (753)
T ss_dssp EEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC
T ss_pred EEEEECCCCcccccccccCCCCCeEEEEECCCCCCC-EEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcc
Confidence 7888888876 78888999999999999999 88 69999999999999998873 3344678999999999999
Q ss_pred -----------CCCeEEEEEcCCcEEEEecCCCCeeee-eeccCCccccEEEEEEecC---CCEEEEEeCCCcEEEEEee
Q 007229 201 -----------DGSKLISVSSDRKGLIYDGKSGEKIGE-FSSEDGHHGSIYAVSWSPD---GKKVLTVSADKSAKVWEIL 265 (612)
Q Consensus 201 -----------~~~~l~~~~~dg~i~vwd~~~~~~~~~-~~~~~~~~~~v~~i~~~~~---~~~l~~~~~dg~i~iw~~~ 265 (612)
+++++++++.||.|++||++++..... .....+|..+|.+++|+|+ ++++++++.||.|++||+
T Consensus 158 ~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~- 236 (753)
T 3jro_A 158 IEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQ- 236 (753)
T ss_dssp ---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEE-
T ss_pred cccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecC-
Confidence 589999999999999999988743221 1122489999999999999 899999999999999999
Q ss_pred cCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEE
Q 007229 266 EDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILS 345 (612)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 345 (612)
..+.... .........|...+.+++|++ ++.++++
T Consensus 237 ---~~~~~~~-----------------------------------------~~~~~~~~~~~~~v~~l~~sp-dg~~l~s 271 (753)
T 3jro_A 237 ---DNEQGPW-----------------------------------------KKTLLKEEKFPDVLWRASWSL-SGNVLAL 271 (753)
T ss_dssp ---SSSSSCC-----------------------------------------BCCBSSSSCCSSCCCCEEECT-TTCCEEE
T ss_pred ---CCCCCcc-----------------------------------------eeEEeccCCCCCceEEEEEcC-CCCEEEE
Confidence 4432110 011123345888899999984 2789999
Q ss_pred EecCCcEEEEEcCCce
Q 007229 346 SSYDGAIIKWIRGVGY 361 (612)
Q Consensus 346 ~~~dg~i~~wd~~~~~ 361 (612)
++.||.|++|++....
T Consensus 272 ~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 272 SGGDNKVTLWKENLEG 287 (753)
T ss_dssp ECSSSCEECCBCCSSS
T ss_pred EcCCCEEEEEecCCCC
Confidence 9999999999998644
No 126
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-32 Score=256.76 Aligned_cols=233 Identities=9% Similarity=-0.003 Sum_probs=192.8
Q ss_pred eEEEEccCCCEEEEec-CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecC---------CC
Q 007229 22 ILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTH---------NG 91 (612)
Q Consensus 22 ~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~---------~~ 91 (612)
...++.+|+++|++++ |+.|++||+++++.+..+. ...|.++.|+|+ +++++.|++|++|+.. ++
T Consensus 40 ~~~~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~ 114 (343)
T 3lrv_A 40 LNKSMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTN 114 (343)
T ss_dssp ECSSSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTC
T ss_pred hhhhhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCc
Confidence 3345567899999998 8999999999999888776 567889999999 9999999999999765 44
Q ss_pred ceeeeeeeecCCCeEEEEECC--CCCEEEEEeCCCCeeeEEEEEecCCceeeeec-cCCceEEEEEEcCCCCEEEEEeec
Q 007229 92 FVLKNEFKVLSGRIDDLQWSP--DGLRIVACGDGKGKSFVRAFMWDSGTTVGDFD-GHSRRVLSCEFKPTRPFRIATCGE 168 (612)
Q Consensus 92 ~~~~~~~~~~~~~i~~~~~s~--~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~ 168 (612)
+.+......|...|.+++|+| +++++++++.++ .+++|+.++++.+.... .|...+.+++|+|++. ++++|+.
T Consensus 115 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg---~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~-~lasg~~ 190 (343)
T 3lrv_A 115 KVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRG---TIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSL-LLALYSP 190 (343)
T ss_dssp CEEEEEECCCSSCEEEEECCC---CCEEEEEETTC---CEEEEESSSSCEEEEECCCSSCCCCEEEECTTSC-EEEEECT
T ss_pred ceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCC---cEEEEECCCCcEEEEEecCCCCceEEEEECCCCC-EEEEEcC
Confidence 423333346778999999999 999999999988 57888888888877664 4556899999999999 6999999
Q ss_pred CCeEEEEeCCCCeee-ecccc-cccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEE--EEEEe
Q 007229 169 DFLVNFYEGPPFKFK-LSHRE-HSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIY--AVSWS 244 (612)
Q Consensus 169 d~~i~~wd~~~~~~~-~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~--~i~~~ 244 (612)
||.|++||+++++.. ..+.. |..+|.+++|+|++.+|++++ |+.|++||+++++....+.....|...+. +++|+
T Consensus 191 dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (343)
T 3lrv_A 191 DGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDID 269 (343)
T ss_dssp TSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEEC
T ss_pred CCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEEC
Confidence 999999999999887 67887 999999999999999999999 55999999999887766532222334443 69999
Q ss_pred cCCCEEEEEeC-CCcEEEEEe
Q 007229 245 PDGKKVLTVSA-DKSAKVWEI 264 (612)
Q Consensus 245 ~~~~~l~~~~~-dg~i~iw~~ 264 (612)
|++++|++++. |+.+++|++
T Consensus 270 ~~g~~l~~~s~~d~~i~v~~~ 290 (343)
T 3lrv_A 270 DSGKNMIAYSNESNSLTIYKF 290 (343)
T ss_dssp TTSSEEEEEETTTTEEEEEEE
T ss_pred CCCCEEEEecCCCCcEEEEEE
Confidence 99999999998 999999998
No 127
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-32 Score=255.91 Aligned_cols=245 Identities=9% Similarity=0.039 Sum_probs=188.6
Q ss_pred EECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEee
Q 007229 197 RFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKT 276 (612)
Q Consensus 197 ~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 276 (612)
.+.+++++|++|+.||.|++||+++++.+..+. ...|.++.|+|+ +++++.|+++++|+. ..
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~-----~~~v~~~~~~~~---~~s~s~D~~i~~w~~----~~------ 104 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT-----TPNPRTGGEHPA---IISRGPCNRLLLLYP----GN------ 104 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE-----EECCCTTCCCCS---EEEECSTTEEEEEET----TT------
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe-----cCCceeeeeCCc---eEEecCCCeEEEEEc----cC------
Confidence 445678899999999999999999999988883 466778888887 999999999999997 22
Q ss_pred eeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEe-cCCcEEEEEecCCcEEEE
Q 007229 277 FASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALK-ISQQTILSSSYDGAIIKW 355 (612)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~~w 355 (612)
.+.+|+............+|...|.++++++ .+++++++++.||.|++|
T Consensus 105 ------------------------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~w 154 (343)
T 3lrv_A 105 ------------------------------QITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQ 154 (343)
T ss_dssp ------------------------------EEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEE
T ss_pred ------------------------------ceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEE
Confidence 3344554433322233346778899999884 348899999999999999
Q ss_pred EcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccE
Q 007229 356 IRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGV 435 (612)
Q Consensus 356 d~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (612)
|+++++......
T Consensus 155 d~~~~~~~~~~~-------------------------------------------------------------------- 166 (343)
T 3lrv_A 155 SYEDDSQYIVHS-------------------------------------------------------------------- 166 (343)
T ss_dssp ESSSSCEEEEEC--------------------------------------------------------------------
T ss_pred ECCCCcEEEEEe--------------------------------------------------------------------
Confidence 998765532211
Q ss_pred EEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeecc-ccCceEEEEEcCCCcEEEEEcC
Q 007229 436 ILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEK-HRGAITVIQYSPDVSMFASADG 514 (612)
Q Consensus 436 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~ 514 (612)
..+...+++++|+|++++|++|+.||.|++||+++++.. ...+.. |.++|++++|+|++.+|++++.
T Consensus 167 -----------~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~-~~~~~~~h~~~v~~l~fs~~g~~l~s~~~ 234 (343)
T 3lrv_A 167 -----------AKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQA-SSRFPVDEEAKIKEVKFADNGYWMVVECD 234 (343)
T ss_dssp -----------CCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSC-CEECCCCTTSCEEEEEECTTSSEEEEEES
T ss_pred -----------cCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCC-ccEEeccCCCCEEEEEEeCCCCEEEEEeC
Confidence 012235889999999999999999999999999988752 145666 9999999999999999999995
Q ss_pred CCeEEEEecCCcceeee--ccccccccee--EEEecCCCcEEEEeec-CcEEEEEEccCCC
Q 007229 515 NREAIVWDRVSKEVKLN--NMLFHTARIN--CLAWSPSSTMVATGSI-DTCVIIYEIGKPA 570 (612)
Q Consensus 515 d~~i~iwd~~~~~~~~~--~~~~~~~~i~--~~~~s~~~~~l~s~~~-d~~i~iwd~~~~~ 570 (612)
+.|++||+++++.... .+..|..++. +++|+|+|++|++++. |+.+++|++....
T Consensus 235 -~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~ 294 (343)
T 3lrv_A 235 -QTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKT 294 (343)
T ss_dssp -SBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred -CeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccc
Confidence 5999999999876522 1222444555 6999999999999988 9999999997633
No 128
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=100.00 E-value=1e-30 Score=255.65 Aligned_cols=331 Identities=12% Similarity=0.098 Sum_probs=252.2
Q ss_pred EECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEe--cCCceeeee
Q 007229 66 RYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMW--DSGTTVGDF 143 (612)
Q Consensus 66 ~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~--~~~~~~~~~ 143 (612)
+|+|+++++++++.|++|.+||..+++. ...+..+.. +..++|+|||++|++++.++ .+.+|+. .+++.+..+
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~-~~~i~~g~~-~~~v~~spdg~~l~v~~~d~---~V~v~D~~~~t~~~~~~i 218 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKI-VKVIDTGYA-VHISRMSASGRYLLVIGRDA---RIDMIDLWAKEPTKVAEI 218 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCE-EEEEECSTT-EEEEEECTTSCEEEEEETTS---EEEEEETTSSSCEEEEEE
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceE-EEEEecCcc-cceEEECCCCCEEEEECCCC---eEEEEECcCCCCcEEEEE
Confidence 4899999999999999999999999984 445553333 88999999999999999885 6888888 678888888
Q ss_pred ccCCceEEEEEEcC----CCCEEEEEeecCCeEEEEeCCCCeeeecccc----------cc-cceEEEEECCCCCeE-EE
Q 007229 144 DGHSRRVLSCEFKP----TRPFRIATCGEDFLVNFYEGPPFKFKLSHRE----------HS-NFVNCIRFSPDGSKL-IS 207 (612)
Q Consensus 144 ~~~~~~v~~~~~~~----~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~----------~~-~~v~~~~~s~~~~~l-~~ 207 (612)
. +...+..++|+| +|++++++...+++|.+||..+++++..+.. |. ..+.++.++|++..+ ++
T Consensus 219 ~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs 297 (543)
T 1nir_A 219 K-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVN 297 (543)
T ss_dssp E-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEE
T ss_pred e-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEE
Confidence 7 456689999999 9996444444689999999999998887654 22 378999999987654 55
Q ss_pred EEcCCcEEEEecCCCCeee--eeeccCCccccEEEEEEecCCCEEEEEe-CCCcEEEEEeecCCCCCeeEeeeeccCccc
Q 007229 208 VSSDRKGLIYDGKSGEKIG--EFSSEDGHHGSIYAVSWSPDGKKVLTVS-ADKSAKVWEILEDGSGGRVIKTFASSTSNA 284 (612)
Q Consensus 208 ~~~dg~i~vwd~~~~~~~~--~~~~~~~~~~~v~~i~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 284 (612)
...++.|.+||+.+++.+. .+ .+...+..++|+|+|+++++++ .+++|.+||. .+++++..+....
T Consensus 298 ~~~~g~i~vvd~~~~~~l~~~~i----~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~----~tg~l~~~i~~g~--- 366 (543)
T 1nir_A 298 VKETGKVLLVNYKDIDNLTVTSI----GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDS----KDRRLSALVDVGK--- 366 (543)
T ss_dssp ETTTTEEEEEECTTSSSCEEEEE----ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEET----TTTEEEEEEECSS---
T ss_pred ECCCCeEEEEEecCCCcceeEEe----ccCcCccCceECCCCCEEEEEecCCCeEEEEEC----CCCeEEEeeccCC---
Confidence 6678999999998876554 33 3456677899999999877665 5789999999 6666655443211
Q ss_pred cceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeee
Q 007229 285 VEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSK 364 (612)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~ 364 (612)
..|..
T Consensus 367 ---------------------------------------~ph~g------------------------------------ 371 (543)
T 1nir_A 367 ---------------------------------------TPHPG------------------------------------ 371 (543)
T ss_dssp ---------------------------------------SBCCT------------------------------------
T ss_pred ---------------------------------------CCCCC------------------------------------
Confidence 00100
Q ss_pred eceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccce
Q 007229 365 LEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVM 444 (612)
Q Consensus 365 ~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (612)
T Consensus 372 -------------------------------------------------------------------------------- 371 (543)
T 1nir_A 372 -------------------------------------------------------------------------------- 371 (543)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeecccceEEEEEEccC-CCeEEEEe-cCCeEEEEEccC-------cccccceeeccccCceEEEEEcCCCcEEEEEc--
Q 007229 445 SKIDLGFTVTACAIAPD-GSEAIVGG-QNGKLHIYSISG-------NTLTEEMVLEKHRGAITVIQYSPDVSMFASAD-- 513 (612)
Q Consensus 445 ~~~~~~~~i~~~~~s~~-~~~l~~~~-~dg~v~i~d~~~-------~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-- 513 (612)
....+ ++|+ +..++++. .|++|.+||+.+ .+. ...+..|.+.+..++|+|++++|++++
T Consensus 372 -------~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~--v~~l~~~g~~~~~v~~~pdg~~l~v~~~~ 441 (543)
T 1nir_A 372 -------RGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKK--VAELQGQGGGSLFIKTHPKSSHLYVDTTF 441 (543)
T ss_dssp -------TCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSE--EEEEECSCSCCCCEECCTTCCEEEECCTT
T ss_pred -------CCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeE--EEEEEcCCCCceEEEcCCCCCcEEEecCC
Confidence 00111 3455 44555554 578899999877 444 678888888889999999999999987
Q ss_pred -----CCCeEEEEecCCcceeeecc--------cccccceeEEEecCCCcEEEEee-----cCcEEEEEEccCCCcceee
Q 007229 514 -----GNREAIVWDRVSKEVKLNNM--------LFHTARINCLAWSPSSTMVATGS-----IDTCVIIYEIGKPASSRIT 575 (612)
Q Consensus 514 -----~d~~i~iwd~~~~~~~~~~~--------~~~~~~i~~~~~s~~~~~l~s~~-----~d~~i~iwd~~~~~~~~~~ 575 (612)
.+++|.+||+.+++...+.+ ..+...+..++|+|||+.|+++. .|+.|.|||..+ + +++.
T Consensus 442 ~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t-~-~~~~ 519 (543)
T 1nir_A 442 NPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKT-L-KLKA 519 (543)
T ss_dssp CSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTT-T-EEEE
T ss_pred CCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCC-c-eEEE
Confidence 26799999999988763332 34678899999999999988663 479999999998 6 6777
Q ss_pred eeccc
Q 007229 576 IKNAH 580 (612)
Q Consensus 576 ~~~~h 580 (612)
.++.+
T Consensus 520 ~i~~~ 524 (543)
T 1nir_A 520 VVKDP 524 (543)
T ss_dssp EECCT
T ss_pred eecCC
Confidence 77643
No 129
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=100.00 E-value=8.1e-31 Score=256.32 Aligned_cols=329 Identities=11% Similarity=0.058 Sum_probs=249.7
Q ss_pred EEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEec--CCCCeeeeeecc
Q 007229 154 EFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDG--KSGEKIGEFSSE 231 (612)
Q Consensus 154 ~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~--~~~~~~~~~~~~ 231 (612)
+|+|++. ++++++.|++|.+||..+++++.++..+.. +..++|+|||++|++++.|+.|.+||+ .+++.+..+
T Consensus 144 ~~~p~~~-~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i--- 218 (543)
T 1nir_A 144 DLDLPNL-FSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEI--- 218 (543)
T ss_dssp CCCGGGE-EEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEE---
T ss_pred ccCCCCE-EEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEE---
Confidence 3888886 699999999999999999999988873333 889999999999999999999999999 888888887
Q ss_pred CCccccEEEEEEec----CCCEEEEEeC-CCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCC
Q 007229 232 DGHHGSIYAVSWSP----DGKKVLTVSA-DKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGG 306 (612)
Q Consensus 232 ~~~~~~v~~i~~~~----~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (612)
.+...+..++|+| ||+++++++. +++|.+||. .+.+++..+......
T Consensus 219 -~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~----~t~~~~~~i~~~g~~----------------------- 270 (543)
T 1nir_A 219 -KIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDG----ETLEPKQIVSTRGMT----------------------- 270 (543)
T ss_dssp -ECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEET----TTCCEEEEEECCEEC-----------------------
T ss_pred -ecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEec----cccccceeecccCcc-----------------------
Confidence 3556789999999 9999999885 899999999 888888776542100
Q ss_pred EEEEEEcCCCCCCceeecCcc-cceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEE
Q 007229 307 IISIFSASNLDKAPLSFSGHV-KNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFT 385 (612)
Q Consensus 307 ~i~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~ 385 (612)
......|. ..+..+.+++.++.++++...++.|.+||..+.......
T Consensus 271 -------------~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~------------------- 318 (543)
T 1nir_A 271 -------------VDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVT------------------- 318 (543)
T ss_dssp -------------SSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEE-------------------
T ss_pred -------------cCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeE-------------------
Confidence 00000122 267778887555677888888899999988764322110
Q ss_pred ecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeE
Q 007229 386 AGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEA 465 (612)
Q Consensus 386 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 465 (612)
.+.+...+..++|+|+|+++
T Consensus 319 ------------------------------------------------------------~i~~~~~~~~~~~spdg~~l 338 (543)
T 1nir_A 319 ------------------------------------------------------------SIGAAPFLHDGGWDSSHRYF 338 (543)
T ss_dssp ------------------------------------------------------------EEECCSSCCCEEECTTSCEE
T ss_pred ------------------------------------------------------------EeccCcCccCceECCCCCEE
Confidence 01111235678999999987
Q ss_pred EEEe-cCCeEEEEEccCcccccceeecc----ccCceEEEEEcCC-CcEEEEEc-CCCeEEEEecCC-------cceeee
Q 007229 466 IVGG-QNGKLHIYSISGNTLTEEMVLEK----HRGAITVIQYSPD-VSMFASAD-GNREAIVWDRVS-------KEVKLN 531 (612)
Q Consensus 466 ~~~~-~dg~v~i~d~~~~~~~~~~~~~~----~~~~i~~~~~s~~-~~~l~~~~-~d~~i~iwd~~~-------~~~~~~ 531 (612)
++++ .+++|.+||+.++++. ..+.. |.+....+ ++|+ +..++++. .|++|.+||+.+ .+.+ .
T Consensus 339 ~va~~~~~~v~v~D~~tg~l~--~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v-~ 414 (543)
T 1nir_A 339 MTAANNSNKVAVIDSKDRRLS--ALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKV-A 414 (543)
T ss_dssp EEEEGGGTEEEEEETTTTEEE--EEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEE-E
T ss_pred EEEecCCCeEEEEECCCCeEE--EeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEE-E
Confidence 7655 5889999999999873 33432 55444443 5676 67777775 689999999988 6665 6
Q ss_pred cccccccceeEEEecCCCcEEEEee-------cCcEEEEEEccCCCcceeeee--------cccccCeeeEEEe-cCceE
Q 007229 532 NMLFHTARINCLAWSPSSTMVATGS-------IDTCVIIYEIGKPASSRITIK--------NAHLGGVYGVAFM-DDFNV 595 (612)
Q Consensus 532 ~~~~~~~~i~~~~~s~~~~~l~s~~-------~d~~i~iwd~~~~~~~~~~~~--------~~h~~~v~~~~~~-~~~~l 595 (612)
.+..|...+..++|+||+++|++++ .+++|.+||+.+.. .....+ ..+...+.++.|+ +++.|
T Consensus 415 ~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~ 493 (543)
T 1nir_A 415 ELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLD-AKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEV 493 (543)
T ss_dssp EEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTT-SCCEEECHHHHHCCCSSCCEEEEEEECSSSSEE
T ss_pred EEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCC-CCeEEeechhhcccCCCCCceEeccCCCCCCEE
Confidence 6777888899999999999999987 37799999999833 322443 4567889999999 88887
Q ss_pred EEc-----cCCCeEEEEEeccC
Q 007229 596 VSS-----GEDACIRVWRLATE 612 (612)
Q Consensus 596 ~s~-----~~d~~i~~w~~~~~ 612 (612)
+.+ +.|+.|.+||.++.
T Consensus 494 ~~s~~~~~~~~~~i~v~D~~t~ 515 (543)
T 1nir_A 494 WFSVWNGKNDSSALVVVDDKTL 515 (543)
T ss_dssp EEEEECCTTSCCEEEEEETTTT
T ss_pred EEEeecCCCCCCeEEEEECCCc
Confidence 754 35899999998863
No 130
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=3.9e-31 Score=250.21 Aligned_cols=270 Identities=11% Similarity=0.070 Sum_probs=175.6
Q ss_pred ccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeee--eeccCCccccEEEEEEec--------CCCEEEEEeCCC
Q 007229 188 EHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGE--FSSEDGHHGSIYAVSWSP--------DGKKVLTVSADK 257 (612)
Q Consensus 188 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~--~~~~~~~~~~v~~i~~~~--------~~~~l~~~~~dg 257 (612)
.|........+++++++|++++.|++|++||.++++.... +....+|.+.|.+++|+| |+++|++++.|+
T Consensus 87 ~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~ 166 (393)
T 4gq1_A 87 LHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDC 166 (393)
T ss_dssp ----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTS
T ss_pred ccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCC
Confidence 4555556666777888999999999999999998876432 333468999999999998 889999999999
Q ss_pred cEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEe
Q 007229 258 SAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALK 337 (612)
Q Consensus 258 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 337 (612)
+|++||+ .++..+. .+.+|...+.+++|++
T Consensus 167 tv~~Wd~----~~~~~~~----------------------------------------------~~~~~~~~v~~v~~~p 196 (393)
T 4gq1_A 167 TLIIWRL----TDEGPIL----------------------------------------------AGYPLSSPGISVQFRP 196 (393)
T ss_dssp EEEEEEE----ETTEEEE----------------------------------------------EEEECSSCEEEEEEET
T ss_pred eEEEEEC----CCCceee----------------------------------------------eecCCCCCcEEEEECC
Confidence 9999999 4444332 2334778899999996
Q ss_pred cCCcEEEEEecCCcEEEEEcCCceeeeeceecccceE--EEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcc
Q 007229 338 ISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIK--CLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPL 415 (612)
Q Consensus 338 ~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~--~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 415 (612)
.+..+|++++.||.|++||+.+++.......+..... ++.... .
T Consensus 197 ~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~--------~-------------------------- 242 (393)
T 4gq1_A 197 SNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNT--------L-------------------------- 242 (393)
T ss_dssp TEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEES--------G--------------------------
T ss_pred CCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccc--------c--------------------------
Confidence 5467899999999999999988765443321111000 000000 0
Q ss_pred eeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEc-cCCCeEEEEecCCeEEEEEccCcccccceeecccc
Q 007229 416 DLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIA-PDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHR 494 (612)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~ 494 (612)
+ .........+...+.+++|+ ||++.+++++.|+.+++||+..++. ...+..|.
T Consensus 243 -----~------------------~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~--~~~l~~~~ 297 (393)
T 4gq1_A 243 -----P------------------LVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANND--YNEISDST 297 (393)
T ss_dssp -----G------------------GC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC---------------
T ss_pred -----c------------------ceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCC--CceEeeec
Confidence 0 00000011234567788886 7999999999999999999987654 33444444
Q ss_pred CceEEEEE------------------cC--CCcEEEEEcCCCeEEEEecCCcceeeecccccccceeEEEecCCCcEEEE
Q 007229 495 GAITVIQY------------------SP--DVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVAT 554 (612)
Q Consensus 495 ~~i~~~~~------------------s~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s 554 (612)
..+..+.+ +| ++.++++++.||.|++||+.+++... .+.+|..+|.+++|+|||++||+
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~-~~~~~~~~V~svafspdG~~LA~ 376 (393)
T 4gq1_A 298 MKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNS-IPIQLGMPIVDFCWHQDGSHLAI 376 (393)
T ss_dssp ------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCE-EEEECSSCEEEEEECTTSSEEEE
T ss_pred CccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEE-EecCCCCcEEEEEEcCCCCEEEE
Confidence 44433333 33 44577889999999999999998864 45568899999999999999999
Q ss_pred eecCcEEEEEEccC
Q 007229 555 GSIDTCVIIYEIGK 568 (612)
Q Consensus 555 ~~~d~~i~iwd~~~ 568 (612)
++.|| +.+|.+..
T Consensus 377 as~~G-v~lvrL~g 389 (393)
T 4gq1_A 377 ATEGS-VLLTRLMG 389 (393)
T ss_dssp EESSE-EEEEEEGG
T ss_pred EeCCC-eEEEEEeC
Confidence 98777 77777653
No 131
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.98 E-value=7.5e-30 Score=242.49 Aligned_cols=238 Identities=11% Similarity=-0.006 Sum_probs=187.3
Q ss_pred CceeEEEEccCCCEEE-Eec-----CC----EEEEEeC--CCCcee--eEeccCCCceEEEEECC--------------C
Q 007229 19 GRGILISGNPKTDTIL-YCN-----GR----SVLIRYL--DKPLHV--EFYGEHGYPVTVARYSP--------------N 70 (612)
Q Consensus 19 ~~v~~~~~s~d~~~l~-~~~-----~~----~i~i~~~--~~~~~~--~~~~~h~~~v~~~~~s~--------------d 70 (612)
+.+...+|+++|..++ +++ +| .+++||+ .+++++ ..+.+|...+..+++++ .
T Consensus 63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~ 142 (415)
T 2hqs_A 63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAF 142 (415)
T ss_dssp GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCT
T ss_pred cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcC
Confidence 4778888999887544 553 46 8999999 888877 45889999998888875 2
Q ss_pred CCEEEEeeCc------CeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeec
Q 007229 71 GEWIASADVS------GSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFD 144 (612)
Q Consensus 71 ~~~las~~~d------~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~ 144 (612)
+..++.++.+ +.|++||+.... ...+..|...+.+++|+|||++|++++.++....+.+|+.++++.. .+.
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~--~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~ 219 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDGYN--QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVA 219 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTSCS--CEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEE
T ss_pred CCEEEEEEecCCCCccceEEEEcCCCCC--CEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-Eee
Confidence 5666666554 799999998653 3577889999999999999999999998754335667776677664 577
Q ss_pred cCCceEEEEEEcCCCCEEEEEeecCCe--EEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEc-CC--cEEEEec
Q 007229 145 GHSRRVLSCEFKPTRPFRIATCGEDFL--VNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSS-DR--KGLIYDG 219 (612)
Q Consensus 145 ~~~~~v~~~~~~~~~~~~l~~~~~d~~--i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg--~i~vwd~ 219 (612)
.|...+.+++|+|+|+.++++++.++. |++||+.+++. ..+..|...+.+++|+|||++|++++. ++ .|++||+
T Consensus 220 ~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~ 298 (415)
T 2hqs_A 220 SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNI 298 (415)
T ss_dssp CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET
T ss_pred cCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEEC
Confidence 788899999999999965557776654 99999998876 456778889999999999999998886 44 6778898
Q ss_pred CCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCC---CcEEEEEe
Q 007229 220 KSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSAD---KSAKVWEI 264 (612)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d---g~i~iw~~ 264 (612)
.+++..... .+...+.+++|+|+|++|++++.+ ..|.+||+
T Consensus 299 ~~~~~~~l~----~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~ 342 (415)
T 2hqs_A 299 NGGAPQRIT----WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDL 342 (415)
T ss_dssp TSSCCEECC----CSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEET
T ss_pred CCCCEEEEe----cCCCcccCeEECCCCCEEEEEECcCCceEEEEEEC
Confidence 887754333 566788999999999999988764 35666766
No 132
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.97 E-value=1.2e-28 Score=255.06 Aligned_cols=327 Identities=11% Similarity=0.080 Sum_probs=234.2
Q ss_pred CCceEEEEECCCCCEEEEeeC-cC-----eEEEeecCCCceeeeeeeecCC------------------------CeEEE
Q 007229 59 GYPVTVARYSPNGEWIASADV-SG-----SVRIWGTHNGFVLKNEFKVLSG------------------------RIDDL 108 (612)
Q Consensus 59 ~~~v~~~~~s~d~~~las~~~-d~-----~i~iwd~~~~~~~~~~~~~~~~------------------------~i~~~ 108 (612)
...|.+++|||||++||+++. |+ .|.+||+.+++. ...+..+.. .+.++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 114 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQT-RLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY 114 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCE-EEEECGGGTC--------------------CCEESCCC
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCce-eEccchhhcccccccccchhhhhhhhhhhccccCccee
Confidence 457999999999999999988 88 899999999873 334443332 37899
Q ss_pred EECCCCCEEEEEeCCCCeeeEEEEEecCCc--eeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecc
Q 007229 109 QWSPDGLRIVACGDGKGKSFVRAFMWDSGT--TVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSH 186 (612)
Q Consensus 109 ~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~ 186 (612)
+|||||++|++++.. .+.+|+.+++. ....+..|...+..++|+|||++ |+.++ ++.|++||+.+++.....
T Consensus 115 ~~SpDg~~l~~~~~~----~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~-la~~~-~~~i~~~d~~~g~~~~~~ 188 (741)
T 2ecf_A 115 QWSPDAQRLLFPLGG----ELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGF-VSFIR-GRNLWVIDLASGRQMQLT 188 (741)
T ss_dssp EECTTSSEEEEEETT----EEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSE-EEEEE-TTEEEEEETTTTEEEECC
T ss_pred EECCCCCEEEEEeCC----cEEEEECCCCCcceEEEcccCCcccccccCCCCCCE-EEEEe-CCcEEEEecCCCCEEEec
Confidence 999999999999873 34555555553 56678888899999999999995 77666 468999999998876655
Q ss_pred cccccc----------------eEEEEECCCCCeEEEEEcCC---------------------------------cEEEE
Q 007229 187 REHSNF----------------VNCIRFSPDGSKLISVSSDR---------------------------------KGLIY 217 (612)
Q Consensus 187 ~~~~~~----------------v~~~~~s~~~~~l~~~~~dg---------------------------------~i~vw 217 (612)
..+... +.+++|||||++|++++.|+ .|++|
T Consensus 189 ~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~ 268 (741)
T 2ecf_A 189 ADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVI 268 (741)
T ss_dssp CCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEE
T ss_pred cCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEE
Confidence 444332 47899999999999988765 78999
Q ss_pred ecCC-CCeeeeeeccCCccccEEEEEEecCCCEEEEEeC-----CCcEEEEEeecCCCCCeeEeeeeccCccccceeeee
Q 007229 218 DGKS-GEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSA-----DKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVG 291 (612)
Q Consensus 218 d~~~-~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (612)
|+.+ ++...... ...+...+..++| |||++|++++. +..|.+||+ .+++....+...
T Consensus 269 d~~~~~~~~~~~~-~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~----~~g~~~~~~~~~----------- 331 (741)
T 2ecf_A 269 SPAEQAQTQWIDL-GKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTL----ASNQQRVLAHET----------- 331 (741)
T ss_dssp CSSTTCCCEEECC-CSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEET----TTCCEEEEEEEE-----------
T ss_pred ECCCCCceEEecC-CCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEEC----CCCceEEEEEcC-----------
Confidence 9988 77554331 1147788999999 99999987764 334555655 322211111000
Q ss_pred eeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceeccc
Q 007229 292 CLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDA 371 (612)
Q Consensus 292 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~ 371 (612)
.++.+
T Consensus 332 --------------------------------------------------------~~~~~------------------- 336 (741)
T 2ecf_A 332 --------------------------------------------------------SPTWV------------------- 336 (741)
T ss_dssp --------------------------------------------------------CSSCC-------------------
T ss_pred --------------------------------------------------------CCCcC-------------------
Confidence 00000
Q ss_pred ceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccc
Q 007229 372 RIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGF 451 (612)
Q Consensus 372 ~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (612)
.
T Consensus 337 -------------------------------------------------------------------------------~ 337 (741)
T 2ecf_A 337 -------------------------------------------------------------------------------P 337 (741)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred -------------------------------------------------------------------------------C
Confidence 0
Q ss_pred eEEEEEEccCCCeEEEEecCCeEEEEEccC-cccccceeeccccCceEEE-EEcCCCcEEEE-EcCCC--eEEEEecCC-
Q 007229 452 TVTACAIAPDGSEAIVGGQNGKLHIYSISG-NTLTEEMVLEKHRGAITVI-QYSPDVSMFAS-ADGNR--EAIVWDRVS- 525 (612)
Q Consensus 452 ~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~-~~~~~~~~~~~~~~~i~~~-~~s~~~~~l~~-~~~d~--~i~iwd~~~- 525 (612)
.+..++|+|||++++++..+|.++||.++. +. ...+..|...+..+ .|+|+++.|+. ++.++ .++||++..
T Consensus 338 ~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~---~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~ 414 (741)
T 2ecf_A 338 LHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK---AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQ 414 (741)
T ss_dssp CCSCCEECTTSCEEEEECTTSSCEEEEECSSSC---EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETT
T ss_pred cCCceEECCCCeEEEEecCCCccEEEEEcCCCC---eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcC
Confidence 133578999999989999999877777652 22 35666777888887 59999987754 44455 899999864
Q ss_pred cceeeecccccccceeEEEecCCCcEEEEeecC----cEEEEEEccC
Q 007229 526 KEVKLNNMLFHTARINCLAWSPSSTMVATGSID----TCVIIYEIGK 568 (612)
Q Consensus 526 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d----~~i~iwd~~~ 568 (612)
+... ..+.. ...+..++|||||++|+....+ ..+++|+...
T Consensus 415 g~~~-~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~ 459 (741)
T 2ecf_A 415 GGQP-QRLSK-APGMHSASFARNASVYVDSWSNNSTPPQIELFRANG 459 (741)
T ss_dssp CCCC-EECCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTS
T ss_pred CCCe-eeccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCC
Confidence 3322 33443 5668899999999998866543 4688998764
No 133
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.97 E-value=6.6e-29 Score=235.98 Aligned_cols=299 Identities=13% Similarity=0.064 Sum_probs=227.9
Q ss_pred CceEEEEEEcCCCCEEEEEee----cCC----eEEEEeC--CCCeee--ecccccccceEEEEECC--------------
Q 007229 147 SRRVLSCEFKPTRPFRIATCG----EDF----LVNFYEG--PPFKFK--LSHREHSNFVNCIRFSP-------------- 200 (612)
Q Consensus 147 ~~~v~~~~~~~~~~~~l~~~~----~d~----~i~~wd~--~~~~~~--~~~~~~~~~v~~~~~s~-------------- 200 (612)
...+...+|.+.+..++++|+ .+| .+++||+ .+++.+ ..+.+|...+..+++++
T Consensus 62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~ 141 (415)
T 2hqs_A 62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGA 141 (415)
T ss_dssp GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCC
T ss_pred ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCc
Confidence 346677788888876677876 457 9999999 888877 44788888888777765
Q ss_pred CCCeEEEEEcC------CcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCC---cEEEEEeecCCCCC
Q 007229 201 DGSKLISVSSD------RKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADK---SAKVWEILEDGSGG 271 (612)
Q Consensus 201 ~~~~l~~~~~d------g~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg---~i~iw~~~~~~~~~ 271 (612)
.+..++.++.+ +.|++||+..+. ...+ ..|...+.+++|+|||++|++++.++ .|++||+ .++
T Consensus 142 ~~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~~l---~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~----~tg 213 (415)
T 2hqs_A 142 FRTRIAYVVQTNGGQFPYELRVSDYDGYN-QFVV---HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTL----ANG 213 (415)
T ss_dssp TTCEEEEEEECSSSSCCEEEEEEETTSCS-CEEE---EEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEET----TTC
T ss_pred CCCEEEEEEecCCCCccceEEEEcCCCCC-CEEE---eCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEEC----CCC
Confidence 25667776664 799999997544 4444 26888999999999999999999875 8999998 555
Q ss_pred eeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEE-EEecCC
Q 007229 272 RVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTIL-SSSYDG 350 (612)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~~dg 350 (612)
+... +..|...+.+++|++. ++.|+ +++.++
T Consensus 214 ~~~~-----------------------------------------------l~~~~~~~~~~~~spd-g~~la~~~~~~g 245 (415)
T 2hqs_A 214 AVRQ-----------------------------------------------VASFPRHNGAPAFSPD-GSKLAFALSKTG 245 (415)
T ss_dssp CEEE-----------------------------------------------EECCSSCEEEEEECTT-SSEEEEEECTTS
T ss_pred cEEE-----------------------------------------------eecCCCcccCEEEcCC-CCEEEEEEecCC
Confidence 4321 2235567788888843 55555 666665
Q ss_pred c--EEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEE
Q 007229 351 A--IIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELAL 428 (612)
Q Consensus 351 ~--i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (612)
. |++||+.+++...+..
T Consensus 246 ~~~i~~~d~~~~~~~~l~~------------------------------------------------------------- 264 (415)
T 2hqs_A 246 SLNLYVMDLASGQIRQVTD------------------------------------------------------------- 264 (415)
T ss_dssp SCEEEEEETTTCCEEECCC-------------------------------------------------------------
T ss_pred CceEEEEECCCCCEEeCcC-------------------------------------------------------------
Confidence 4 7888877654322111
Q ss_pred EEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEec-CC--eEEEEEccCcccccceeeccccCceEEEEEcCC
Q 007229 429 VSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQ-NG--KLHIYSISGNTLTEEMVLEKHRGAITVIQYSPD 505 (612)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg--~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~ 505 (612)
+...+.+++|+|||++|++++. ++ .|++||+.+++. ..+..+...+.+++|+||
T Consensus 265 --------------------~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~---~~l~~~~~~~~~~~~spd 321 (415)
T 2hqs_A 265 --------------------GRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP---QRITWEGSQNQDADVSSD 321 (415)
T ss_dssp --------------------CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC---EECCCSSSEEEEEEECTT
T ss_pred --------------------CCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE---EEEecCCCcccCeEECCC
Confidence 2235788999999999998876 44 688889988764 345556778999999999
Q ss_pred CcEEEEEcCC---CeEEEEecCCcceeeecccccccceeEEEecCCCcEEEEeecCc---EEEEEEccCCCcceeeeecc
Q 007229 506 VSMFASADGN---REAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDT---CVIIYEIGKPASSRITIKNA 579 (612)
Q Consensus 506 ~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~---~i~iwd~~~~~~~~~~~~~~ 579 (612)
|++|++++.+ ..|++||+.+++.. .+..+. .+.+++|+|||++|++++.++ .|++||+.. .....+..
T Consensus 322 G~~l~~~~~~~g~~~i~~~d~~~~~~~--~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g---~~~~~l~~ 395 (415)
T 2hqs_A 322 GKFMVMVSSNGGQQHIAKQDLATGGVQ--VLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDG---RFKARLPA 395 (415)
T ss_dssp SSEEEEEEECSSCEEEEEEETTTCCEE--ECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTS---CCEEECCC
T ss_pred CCEEEEEECcCCceEEEEEECCCCCEE--EecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCC---CcEEEeeC
Confidence 9999988764 68999999998774 244454 899999999999999988777 899999875 56778899
Q ss_pred cccCeeeEEEec
Q 007229 580 HLGGVYGVAFMD 591 (612)
Q Consensus 580 h~~~v~~~~~~~ 591 (612)
|.+.|.+++|++
T Consensus 396 ~~~~v~~~~~~~ 407 (415)
T 2hqs_A 396 TDGQVKFPAWSP 407 (415)
T ss_dssp SSSEEEEEEECC
T ss_pred CCCCCcCCcccc
Confidence 999999999994
No 134
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.97 E-value=1.3e-28 Score=254.66 Aligned_cols=235 Identities=10% Similarity=0.033 Sum_probs=186.3
Q ss_pred CCceeEEEEccCCCEEEEec--CC-----EEEEEeCCCCceeeEeccCCC------------------------ceEEEE
Q 007229 18 RGRGILISGNPKTDTILYCN--GR-----SVLIRYLDKPLHVEFYGEHGY------------------------PVTVAR 66 (612)
Q Consensus 18 ~~~v~~~~~s~d~~~l~~~~--~~-----~i~i~~~~~~~~~~~~~~h~~------------------------~v~~~~ 66 (612)
...+.+++|||||++|++++ ++ .|.+||+++++....+..|.. .|.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 44689999999999999987 45 899999999988777765543 389999
Q ss_pred ECCCCCEEEEeeCcCeEEEeecCCC---ceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeee
Q 007229 67 YSPNGEWIASADVSGSVRIWGTHNG---FVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDF 143 (612)
Q Consensus 67 ~s~d~~~las~~~d~~i~iwd~~~~---~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~ 143 (612)
|||||++|++++. +.|.+||+.++ + +. .+..|...+..++|||||++|++++.+ .+.+|+.++++.....
T Consensus 116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~-~~-~l~~~~~~~~~~~~SPDG~~la~~~~~----~i~~~d~~~g~~~~~~ 188 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-GELYLYDLKQEGKAA-VR-QLTHGEGFATDAKLSPKGGFVSFIRGR----NLWVIDLASGRQMQLT 188 (741)
T ss_dssp ECTTSSEEEEEET-TEEEEEESSSCSTTS-CC-BCCCSSSCEEEEEECTTSSEEEEEETT----EEEEEETTTTEEEECC
T ss_pred ECCCCCEEEEEeC-CcEEEEECCCCCcce-EE-EcccCCcccccccCCCCCCEEEEEeCC----cEEEEecCCCCEEEec
Confidence 9999999999986 89999999987 4 32 466778899999999999999999865 2455555566665554
Q ss_pred ccCCce----------------EEEEEEcCCCCEEEEEeecCC---------------------------------eEEE
Q 007229 144 DGHSRR----------------VLSCEFKPTRPFRIATCGEDF---------------------------------LVNF 174 (612)
Q Consensus 144 ~~~~~~----------------v~~~~~~~~~~~~l~~~~~d~---------------------------------~i~~ 174 (612)
..+... +..++|+|||++ |++++.|+ .|++
T Consensus 189 ~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~-l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~ 267 (741)
T 2ecf_A 189 ADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSA-IAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGV 267 (741)
T ss_dssp CCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSC-EEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEE
T ss_pred cCCccceeccccceeeeeccccccceEECCCCCE-EEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEE
Confidence 444432 478999999995 77776655 8899
Q ss_pred EeCCC-Ceeeeccc--ccccceEEEEECCCCCeEEEEEc-----CCcEEEEecCCCCeeeeeeccCCccc----cEEEEE
Q 007229 175 YEGPP-FKFKLSHR--EHSNFVNCIRFSPDGSKLISVSS-----DRKGLIYDGKSGEKIGEFSSEDGHHG----SIYAVS 242 (612)
Q Consensus 175 wd~~~-~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~-----dg~i~vwd~~~~~~~~~~~~~~~~~~----~v~~i~ 242 (612)
||+.+ ++...... .|...+..++| |||++|++++. +..|++||+.+++....+. .+.. .+..++
T Consensus 268 ~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~---~~~~~~~~~~~~~~ 343 (741)
T 2ecf_A 268 ISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAH---ETSPTWVPLHNSLR 343 (741)
T ss_dssp ECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEE---EECSSCCCCCSCCE
T ss_pred EECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEE---cCCCCcCCcCCceE
Confidence 99988 77654432 47788999999 99999997764 5679999999998776663 2221 346889
Q ss_pred EecCCCEEEEEeCCCcEEEEEe
Q 007229 243 WSPDGKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 243 ~~~~~~~l~~~~~dg~i~iw~~ 264 (612)
|+|||+++++++.+|.+++|.+
T Consensus 344 ~spdg~~~~~~~~~g~~~l~~~ 365 (741)
T 2ecf_A 344 FLDDGSILWSSERTGFQHLYRI 365 (741)
T ss_dssp ECTTSCEEEEECTTSSCEEEEE
T ss_pred ECCCCeEEEEecCCCccEEEEE
Confidence 9999998888889999999987
No 135
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.97 E-value=2.3e-28 Score=252.32 Aligned_cols=238 Identities=13% Similarity=0.081 Sum_probs=174.6
Q ss_pred CceeEEEEccCCCEEEEecCCEEEEEeCCCCceeeEeccCCC---ceEEEEECCCCCEEEEeeCc---------CeEEEe
Q 007229 19 GRGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGY---PVTVARYSPNGEWIASADVS---------GSVRIW 86 (612)
Q Consensus 19 ~~v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~~~~h~~---~v~~~~~s~d~~~las~~~d---------~~i~iw 86 (612)
..+.+++|||||++++.+.++.|++||+++++....+.+|.. .|.+++|||||++||+++.+ +.|.+|
T Consensus 17 ~~~~~~~~spdg~~~~~~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~ 96 (723)
T 1xfd_A 17 IHDPEAKWISDTEFIYREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS 96 (723)
T ss_dssp CCCCCCCBSSSSCBCCCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred ccccccEEcCCCcEEEEeCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence 457789999999988775689999999999998888887765 49999999999999999764 788999
Q ss_pred ecCCCceeeeeee---ecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceE-------------
Q 007229 87 GTHNGFVLKNEFK---VLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRV------------- 150 (612)
Q Consensus 87 d~~~~~~~~~~~~---~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v------------- 150 (612)
|+.+++. ..+. .|...+..++|||||++|++++... +.+|+.++++.......+...+
T Consensus 97 d~~~~~~--~~l~~~~~~~~~~~~~~~SPdG~~la~~~~~~----i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee 170 (723)
T 1xfd_A 97 KIPHGDP--QSLDPPEVSNAKLQYAGWGPKGQQLIFIFENN----IYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEE 170 (723)
T ss_dssp ESSSCCC--EECCCTTCCSCCCSBCCBCSSTTCEEEEETTE----EEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHT
T ss_pred ECCCCce--EeccCCccccccccccEECCCCCEEEEEECCe----EEEEECCCCceEEEecCCCCCceECcccceeEEEE
Confidence 9998873 2233 3444588999999999999998742 4444444666665555444333
Q ss_pred -----EEEEEcCCCCEEEEEee-cCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCe
Q 007229 151 -----LSCEFKPTRPFRIATCG-EDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEK 224 (612)
Q Consensus 151 -----~~~~~~~~~~~~l~~~~-~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~ 224 (612)
.+++|+|||++ |++++ .++.+.+|++..... .+...+..+.|.++|.. ..+..|++||+.+++.
T Consensus 171 ~~~~~~~~~~SpDg~~-la~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~G~~----~~~~~l~~~d~~~~~~ 240 (723)
T 1xfd_A 171 ILKTHIAHWWSPDGTR-LAYAAINDSRVPIMELPTYTG-----SIYPTVKPYHYPKAGSE----NPSISLHVIGLNGPTH 240 (723)
T ss_dssp TSSSSEEEEECTTSSE-EEEEEEECTTSCEEEECCCSS-----SSSCCCEEEECCBTTSC----CCEEEEEEEESSSSCC
T ss_pred eccCcceEEECCCCCE-EEEEEECCCccceEEeeccCC-----cCCCcceeccCCCCCCC----CCeeEEEEEECCCCce
Confidence 78999999996 55555 445778887653221 13345788999988863 3346899999998886
Q ss_pred eeeeecc---CCccccEEEEEEecCCCEEEEEeCC----CcEEEEEeecCCCCCeeEee
Q 007229 225 IGEFSSE---DGHHGSIYAVSWSPDGKKVLTVSAD----KSAKVWEILEDGSGGRVIKT 276 (612)
Q Consensus 225 ~~~~~~~---~~~~~~v~~i~~~~~~~~l~~~~~d----g~i~iw~~~~~~~~~~~~~~ 276 (612)
...+... ..+...+..++|+|||+++++.... ..|.+||+ .+++....
T Consensus 241 ~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~----~~g~~~~~ 295 (723)
T 1xfd_A 241 DLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDA----TTGVCTKK 295 (723)
T ss_dssp CEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEET----TTCCEEEE
T ss_pred eEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeC----CCCcceEE
Confidence 5555210 1136789999999999988776533 57889998 66655443
No 136
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.96 E-value=4.3e-28 Score=250.23 Aligned_cols=359 Identities=12% Similarity=0.014 Sum_probs=234.2
Q ss_pred CceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCC---CeEEEEECCCCCEEEEEeCCCCeeeEEEEEecC
Q 007229 60 YPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSG---RIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDS 136 (612)
Q Consensus 60 ~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~---~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~ 136 (612)
..+.+++|||||+++++ +.||+|++||+.+++. ...+..|.. .+.+++|||||++|++++.+...
T Consensus 17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~-~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~---------- 84 (723)
T 1xfd_A 17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVETNTS-TVLIEGKKIESLRAIRYEISPDREYALFSYNVEPI---------- 84 (723)
T ss_dssp CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCC-EEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCC----------
T ss_pred ccccccEEcCCCcEEEE-eCCCCEEEEECCCCcE-EEEeccccccccccceEEECCCCCEEEEEecCccc----------
Confidence 34678999999998876 6899999999999873 445555554 48899999999999888765421
Q ss_pred CceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeee--ecccccccceEEEEECCCCCeEEEEEcCCcE
Q 007229 137 GTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFK--LSHREHSNFVNCIRFSPDGSKLISVSSDRKG 214 (612)
Q Consensus 137 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 214 (612)
...+.++.+++||+.+++.. ....+|...+..++|||||++|++++. +.|
T Consensus 85 ---------------------------~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i 136 (723)
T 1xfd_A 85 ---------------------------YQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNI 136 (723)
T ss_dssp ---------------------------SSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEE
T ss_pred ---------------------------eeecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeE
Confidence 00123578999999888752 223345556889999999999999885 899
Q ss_pred EEEecCCCCeeeeeeccCCccc------------------cEEEEEEecCCCEEEEEeCC-CcEEEEEeecCCCCCeeEe
Q 007229 215 LIYDGKSGEKIGEFSSEDGHHG------------------SIYAVSWSPDGKKVLTVSAD-KSAKVWEILEDGSGGRVIK 275 (612)
Q Consensus 215 ~vwd~~~~~~~~~~~~~~~~~~------------------~v~~i~~~~~~~~l~~~~~d-g~i~iw~~~~~~~~~~~~~ 275 (612)
++||+.+++...... .+.. .+.+++|+|||++|++++.+ +.+.+|++ .....
T Consensus 137 ~~~~~~~g~~~~~~~---~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~----~~~~~-- 207 (723)
T 1xfd_A 137 YYCAHVGKQAIRVVS---TGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMEL----PTYTG-- 207 (723)
T ss_dssp EEESSSSSCCEEEEC---CCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEE----CCCSS--
T ss_pred EEEECCCCceEEEec---CCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEe----eccCC--
Confidence 999999887765542 2222 23789999999999988765 46777776 11000
Q ss_pred eeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEE
Q 007229 276 TFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKW 355 (612)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~w 355 (612)
.+...+..+.+... +.. ..+..|++|
T Consensus 208 -------------------------------------------------~~~~~~~~~~~~~~-G~~----~~~~~l~~~ 233 (723)
T 1xfd_A 208 -------------------------------------------------SIYPTVKPYHYPKA-GSE----NPSISLHVI 233 (723)
T ss_dssp -------------------------------------------------SSSCCCEEEECCBT-TSC----CCEEEEEEE
T ss_pred -------------------------------------------------cCCCcceeccCCCC-CCC----CCeeEEEEE
Confidence 01112333444321 211 123456677
Q ss_pred EcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccE
Q 007229 356 IRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGV 435 (612)
Q Consensus 356 d~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (612)
|+.+++.......+
T Consensus 234 d~~~~~~~~~l~~~------------------------------------------------------------------ 247 (723)
T 1xfd_A 234 GLNGPTHDLEMMPP------------------------------------------------------------------ 247 (723)
T ss_dssp ESSSSCCCEECCCC------------------------------------------------------------------
T ss_pred ECCCCceeEEeeCC------------------------------------------------------------------
Confidence 76654421111000
Q ss_pred EEeecccceeeecccceEEEEEEccCCCeEEEEecC----CeEEEEEccCcccccceeecc-ccCce----EEEEEcCCC
Q 007229 436 ILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQN----GKLHIYSISGNTLTEEMVLEK-HRGAI----TVIQYSPDV 506 (612)
Q Consensus 436 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d----g~v~i~d~~~~~~~~~~~~~~-~~~~i----~~~~~s~~~ 506 (612)
.....+...+..++|||||+++++.... ..|++||+.+++.. ..+.. +...+ ..++|+|||
T Consensus 248 --------~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~--~~~~~~~~~~~~~~~~~~~~spdg 317 (723)
T 1xfd_A 248 --------DDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCT--KKHEDESEAWLHRQNEEPVFSKDG 317 (723)
T ss_dssp --------CCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEE--EEEEEECSSCCCCCCCCCEECTTS
T ss_pred --------ccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcce--EEEEeccCCEEeccCCCceEcCCC
Confidence 0000113468899999999998776543 57999999988762 33322 33433 378999999
Q ss_pred cEEEE--EcCCC------eEEEEe-cCCcce--eeecccccccceeE-EEecCCCcEEEEeecC---cEEEEEEccCCCc
Q 007229 507 SMFAS--ADGNR------EAIVWD-RVSKEV--KLNNMLFHTARINC-LAWSPSSTMVATGSID---TCVIIYEIGKPAS 571 (612)
Q Consensus 507 ~~l~~--~~~d~------~i~iwd-~~~~~~--~~~~~~~~~~~i~~-~~~s~~~~~l~s~~~d---~~i~iwd~~~~~~ 571 (612)
+.|+. ...++ .|++|| ..+++. . ..+..+...+.. ++|+|||+.|+..+.+ +.++||++...+.
T Consensus 318 ~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~-~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~ 396 (723)
T 1xfd_A 318 RKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNI-QSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGN 396 (723)
T ss_dssp CSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCC-CBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTT
T ss_pred CeEEEEEecccCCCcceeEEEEEeccCCCCccce-eEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCC
Confidence 98775 44666 577777 444441 2 233333334444 7999999999766554 7899999976331
Q ss_pred ceeeeecc---cccCeeeEEEe-cCceEEEc
Q 007229 572 SRITIKNA---HLGGVYGVAFM-DDFNVVSS 598 (612)
Q Consensus 572 ~~~~~~~~---h~~~v~~~~~~-~~~~l~s~ 598 (612)
.....+.. |...+..++|+ ++++|+..
T Consensus 397 ~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~ 427 (723)
T 1xfd_A 397 FNRQCLSCDLVENCTYFSASFSHSMDFFLLK 427 (723)
T ss_dssp CCCBCSSTTSSSSCCCCEEEECTTSSEEEEE
T ss_pred CCcceecccccCCCCeEEEEECCCCCEEEEE
Confidence 23334443 67789999999 88876653
No 137
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.96 E-value=1.4e-26 Score=237.95 Aligned_cols=321 Identities=13% Similarity=0.111 Sum_probs=220.7
Q ss_pred eEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecC-----------------CCeEEEEECCCCCEEEEEeCCC
Q 007229 62 VTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLS-----------------GRIDDLQWSPDGLRIVACGDGK 124 (612)
Q Consensus 62 v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~-----------------~~i~~~~~s~~~~~l~~~~~~~ 124 (612)
+..+.|+ |+.+++++.|+ | +||+.+++.+...+..+. ..|.+++|||| ++++.+.+.
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~~~- 101 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFTQG- 101 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEETT-
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEECC-
Confidence 4557777 56677777777 8 999999874202333333 56999999999 777766553
Q ss_pred CeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCC-----Ceeeecccccccc-------
Q 007229 125 GKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPP-----FKFKLSHREHSNF------- 192 (612)
Q Consensus 125 ~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~-----~~~~~~~~~~~~~------- 192 (612)
.+.+|+.++++. ..+..+...+.+++|+|||++ |+.+ .++.|++||+.+ ++.......+...
T Consensus 102 ---~i~~~d~~~~~~-~~l~~~~~~~~~~~~SpdG~~-la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~ 175 (706)
T 2z3z_A 102 ---GLVGFDMLARKV-TYLFDTNEETASLDFSPVGDR-VAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAV 175 (706)
T ss_dssp ---EEEEEETTTTEE-EEEECCTTCCTTCEECTTSSE-EEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCC
T ss_pred ---EEEEEECCCCce-EEccCCcccccCCcCCCCCCE-EEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccch
Confidence 345555555544 445567778899999999995 6664 689999999998 7766544444333
Q ss_pred -------eEEEEECCCCCeEEEEE---------------------------------cCCcEEEEecCCCCeeeeeeccC
Q 007229 193 -------VNCIRFSPDGSKLISVS---------------------------------SDRKGLIYDGKSGEKIGEFSSED 232 (612)
Q Consensus 193 -------v~~~~~s~~~~~l~~~~---------------------------------~dg~i~vwd~~~~~~~~~~~~~~ 232 (612)
+.+++|+|||++|++++ .+..|++||+.+++...... ..
T Consensus 176 ~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~-~~ 254 (706)
T 2z3z_A 176 HQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQT-GE 254 (706)
T ss_dssp GGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCC-CS
T ss_pred hhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeecc-CC
Confidence 48899999999999987 34679999999887654431 12
Q ss_pred CccccEEEEEEecCCCEEEEEeCCC-----cEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCE
Q 007229 233 GHHGSIYAVSWSPDGKKVLTVSADK-----SAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGI 307 (612)
Q Consensus 233 ~~~~~v~~i~~~~~~~~l~~~~~dg-----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (612)
.+...+..++|+|||++|++++.++ .|.+||+ .+++....+.
T Consensus 255 ~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~----~~g~~~~~~~----------------------------- 301 (706)
T 2z3z_A 255 PKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDA----ETGRFVRTLF----------------------------- 301 (706)
T ss_dssp CTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEET----TTCCEEEEEE-----------------------------
T ss_pred CCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEEC----CCCceeeEEE-----------------------------
Confidence 4667899999999999999887665 6777776 3331111000
Q ss_pred EEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEec
Q 007229 308 ISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAG 387 (612)
Q Consensus 308 i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~ 387 (612)
.....+.
T Consensus 302 -------------------------------------~~~~~~~------------------------------------ 308 (706)
T 2z3z_A 302 -------------------------------------VETDKHY------------------------------------ 308 (706)
T ss_dssp -------------------------------------EEECSSC------------------------------------
T ss_pred -------------------------------------EccCCCe------------------------------------
Confidence 0000000
Q ss_pred CCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEcc--CCCeE
Q 007229 388 FDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAP--DGSEA 465 (612)
Q Consensus 388 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~--~~~~l 465 (612)
...+.+++|+| ||+++
T Consensus 309 --------------------------------------------------------------~~~~~~~~~sp~~dg~~l 326 (706)
T 2z3z_A 309 --------------------------------------------------------------VEPLHPLTFLPGSNNQFI 326 (706)
T ss_dssp --------------------------------------------------------------CCCCSCCEECTTCSSEEE
T ss_pred --------------------------------------------------------------ECccCCceeecCCCCEEE
Confidence 00124568999 99999
Q ss_pred EEEecCCeEEEEEcc-CcccccceeeccccCceEE-EEEcCCCcEEEEEcC-CC----eEEEEecCCcceeeeccccccc
Q 007229 466 IVGGQNGKLHIYSIS-GNTLTEEMVLEKHRGAITV-IQYSPDVSMFASADG-NR----EAIVWDRVSKEVKLNNMLFHTA 538 (612)
Q Consensus 466 ~~~~~dg~v~i~d~~-~~~~~~~~~~~~~~~~i~~-~~~s~~~~~l~~~~~-d~----~i~iwd~~~~~~~~~~~~~~~~ 538 (612)
+++..+|.+++|.++ ++.. ...+..|...+.. ++|+|+++.|+.++. ++ .|..||+.+++. ..+. |..
T Consensus 327 ~~~~~~g~~~l~~~~~~~~~--~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~--~~l~-~~~ 401 (706)
T 2z3z_A 327 WQSRRDGWNHLYLYDTTGRL--IRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKT--KDLT-PES 401 (706)
T ss_dssp EEECTTSSCEEEEEETTSCE--EEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCC--EESC-CSS
T ss_pred EEEccCCccEEEEEECCCCE--EEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCc--eecc-CCC
Confidence 999999988888876 3433 4556677777877 799999988766554 43 677778877664 2333 667
Q ss_pred ceeEEEecCCCcEEEEeecC----cEEEEEEccC
Q 007229 539 RINCLAWSPSSTMVATGSID----TCVIIYEIGK 568 (612)
Q Consensus 539 ~i~~~~~s~~~~~l~s~~~d----~~i~iwd~~~ 568 (612)
.+.+++|+|||++|+....+ +.|++||+.+
T Consensus 402 ~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~ 435 (706)
T 2z3z_A 402 GMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGK 435 (706)
T ss_dssp SEEEEEECTTSSEEEEEEECSSCSCEEEEEESSS
T ss_pred ceEEEEECCCCCEEEEEecCCCCCcEEEEEECCC
Confidence 79999999999988876443 5699999987
No 138
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.96 E-value=2.1e-26 Score=236.72 Aligned_cols=231 Identities=12% Similarity=0.112 Sum_probs=166.7
Q ss_pred eeEEEEccCCCEEEEecCCEEEEEeCCCCcee-eEeccCC-----------------CceEEEEECCCCCEEEEeeCcCe
Q 007229 21 GILISGNPKTDTILYCNGRSVLIRYLDKPLHV-EFYGEHG-----------------YPVTVARYSPNGEWIASADVSGS 82 (612)
Q Consensus 21 v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~-~~~~~h~-----------------~~v~~~~~s~d~~~las~~~d~~ 82 (612)
+..+.|+ |+.+++..+..| +||+.+++.+ ..+..|. ..|.+++|||| +.++.+. ++.
T Consensus 28 ~~~~~w~--g~~~~~~~~~~i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~-~~~ 102 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDDL-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT-QGG 102 (706)
T ss_dssp CTTCEEE--TTEEEEEETTEE-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE-TTE
T ss_pred CCCCcCc--CCeEEEEeCCcE-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE-CCE
Confidence 4557777 556666664348 9999999873 3344443 56999999999 6666553 599
Q ss_pred EEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecC-----CceeeeeccCCce--------
Q 007229 83 VRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDS-----GTTVGDFDGHSRR-------- 149 (612)
Q Consensus 83 i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~-----~~~~~~~~~~~~~-------- 149 (612)
|++||+.+++ + ..+..+...+.+++|||||++|+++.+ + .+.+|+.++ ++.......+...
T Consensus 103 i~~~d~~~~~-~-~~l~~~~~~~~~~~~SpdG~~la~~~~-~---~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~ 176 (706)
T 2z3z_A 103 LVGFDMLARK-V-TYLFDTNEETASLDFSPVGDRVAYVRN-H---NLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVH 176 (706)
T ss_dssp EEEEETTTTE-E-EEEECCTTCCTTCEECTTSSEEEEEET-T---EEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCG
T ss_pred EEEEECCCCc-e-EEccCCcccccCCcCCCCCCEEEEEEC-C---eEEEEecCcccccCCCcEEeccCCCCCeEcccchh
Confidence 9999999886 3 345556778999999999999999754 3 355666556 6666555444443
Q ss_pred ------EEEEEEcCCCCEEEEEee---------------------------------cCCeEEEEeCCCCeeeecc--cc
Q 007229 150 ------VLSCEFKPTRPFRIATCG---------------------------------EDFLVNFYEGPPFKFKLSH--RE 188 (612)
Q Consensus 150 ------v~~~~~~~~~~~~l~~~~---------------------------------~d~~i~~wd~~~~~~~~~~--~~ 188 (612)
+.+++|+|||++ |++++ .+..|++||+.+++..... ..
T Consensus 177 ~ee~~~~~~~~~SpDg~~-la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~ 255 (706)
T 2z3z_A 177 QREFGIEKGTFWSPKGSC-LAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEP 255 (706)
T ss_dssp GGCTTCCCSEEECTTSSE-EEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSC
T ss_pred hhhcCCCceEEECCCCCE-EEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCC
Confidence 488999999995 66665 4578999999998865543 25
Q ss_pred cccceEEEEECCCCCeEEEEEcCC-----cEEEEecCCCCeeeeeeccCCcc---ccEEEEEEec--CCCEEEEEeCCCc
Q 007229 189 HSNFVNCIRFSPDGSKLISVSSDR-----KGLIYDGKSGEKIGEFSSEDGHH---GSIYAVSWSP--DGKKVLTVSADKS 258 (612)
Q Consensus 189 ~~~~v~~~~~s~~~~~l~~~~~dg-----~i~vwd~~~~~~~~~~~~~~~~~---~~v~~i~~~~--~~~~l~~~~~dg~ 258 (612)
|...+.+++|+|||++|++++.++ .|++||+.+++....+... .+. ..+..++|+| ||++++++..+|.
T Consensus 256 ~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~-~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~ 334 (706)
T 2z3z_A 256 KEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVE-TDKHYVEPLHPLTFLPGSNNQFIWQSRRDGW 334 (706)
T ss_dssp TTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEE-ECSSCCCCCSCCEECTTCSSEEEEEECTTSS
T ss_pred CceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEc-cCCCeECccCCceeecCCCCEEEEEEccCCc
Confidence 677899999999999999988776 8999999998444443211 111 2346789999 9999999989999
Q ss_pred EEEEEe
Q 007229 259 AKVWEI 264 (612)
Q Consensus 259 i~iw~~ 264 (612)
+++|.+
T Consensus 335 ~~l~~~ 340 (706)
T 2z3z_A 335 NHLYLY 340 (706)
T ss_dssp CEEEEE
T ss_pred cEEEEE
Confidence 999998
No 139
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.95 E-value=3.1e-25 Score=205.78 Aligned_cols=240 Identities=10% Similarity=-0.008 Sum_probs=180.7
Q ss_pred EEEccCCCEEEEec--CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeC-cCeEEEeecCCCceeeeeeee
Q 007229 24 ISGNPKTDTILYCN--GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADV-SGSVRIWGTHNGFVLKNEFKV 100 (612)
Q Consensus 24 ~~~s~d~~~l~~~~--~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~-d~~i~iwd~~~~~~~~~~~~~ 100 (612)
..|+++++++++.. ++.|.+||+++++....+..+...+ +++|+|||++|++++. ++.|.+||..+++.....+..
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~ 81 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE 81 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc
Confidence 45677777755554 7899999999999988887777777 9999999997776655 889999999998842556666
Q ss_pred cCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCe-EEEEeCCC
Q 007229 101 LSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFL-VNFYEGPP 179 (612)
Q Consensus 101 ~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~-i~~wd~~~ 179 (612)
+.....+++|+|||++|++...++....+.+|+.++++.+..+..+. ....++|+|++++++++...++. |.+|++..
T Consensus 82 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~ 160 (331)
T 3u4y_A 82 GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPY-DAVGIAISPNGNGLILIDRSSANTVRRFKIDA 160 (331)
T ss_dssp CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCT-TEEEEEECTTSSCEEEEEETTTTEEEEEEECT
T ss_pred CCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCC-CccceEECCCCCEEEEEecCCCceEEEEEECC
Confidence 66666669999999999954444231246777777888888776544 45899999999876777777788 99999875
Q ss_pred Ceeee----cccccccceEEEEECCCCCeEEEEE-cCCcEEEEecCCCCe---eeeeeccCCccccEEEEEEecCCCEEE
Q 007229 180 FKFKL----SHREHSNFVNCIRFSPDGSKLISVS-SDRKGLIYDGKSGEK---IGEFSSEDGHHGSIYAVSWSPDGKKVL 251 (612)
Q Consensus 180 ~~~~~----~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~---~~~~~~~~~~~~~v~~i~~~~~~~~l~ 251 (612)
...+. ........+..++|+|+|+++++++ .++.|.+||+.+++. +..+ .....+..++|+|+|++++
T Consensus 161 ~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~----~~~~~~~~~~~spdg~~l~ 236 (331)
T 3u4y_A 161 DGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAV----GTNNLPGTIVVSRDGSTVY 236 (331)
T ss_dssp TCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEE----ECSSCCCCEEECTTSSEEE
T ss_pred CCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeec----cCCCCCceEEECCCCCEEE
Confidence 43321 1113345689999999999776655 588999999999988 6666 3446678999999999777
Q ss_pred EEe-CCCcEEEEEeecCCCCCee
Q 007229 252 TVS-ADKSAKVWEILEDGSGGRV 273 (612)
Q Consensus 252 ~~~-~dg~i~iw~~~~~~~~~~~ 273 (612)
++. .++.|.+||+ .+++.
T Consensus 237 v~~~~~~~i~~~d~----~~~~~ 255 (331)
T 3u4y_A 237 VLTESTVDVFNFNQ----LSGTL 255 (331)
T ss_dssp EECSSEEEEEEEET----TTTEE
T ss_pred EEEcCCCEEEEEEC----CCCce
Confidence 665 4678999998 66665
No 140
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.95 E-value=3.6e-25 Score=206.78 Aligned_cols=188 Identities=13% Similarity=0.129 Sum_probs=137.4
Q ss_pred EEEEeeCcCeEEEeecC-CCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec--CCc--eeeeeccCC
Q 007229 73 WIASADVSGSVRIWGTH-NGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD--SGT--TVGDFDGHS 147 (612)
Q Consensus 73 ~las~~~d~~i~iwd~~-~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~--~~~--~~~~~~~~~ 147 (612)
++++++.|+.|++||+. +++........+...+.+++|+|+|++|++++.+.. .+.+|..+ +++ .+..+..+.
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~ 84 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEF--RVLAYRIAPDDGALTFAAESALPG 84 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTT--EEEEEEECTTTCCEEEEEEEECSS
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCC--eEEEEEecCCCCceeeccccccCC
Confidence 44455789999999996 333222233457788999999999999999888633 47788777 444 344555444
Q ss_pred ceEEEEEEcCCCCEEEEEeecCCeEEEEeC---CCCeeeecccccccceEEEEECCCCCeEEEEE-cCCcEEEEecCC-C
Q 007229 148 RRVLSCEFKPTRPFRIATCGEDFLVNFYEG---PPFKFKLSHREHSNFVNCIRFSPDGSKLISVS-SDRKGLIYDGKS-G 222 (612)
Q Consensus 148 ~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~---~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~-~ 222 (612)
.+..++|+|+++++++++..++.|.+||+ ...+....+..+ ..+.+++|+|+++++++++ .++.|.+||+.+ +
T Consensus 85 -~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~ 162 (343)
T 1ri6_A 85 -SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDDG 162 (343)
T ss_dssp -CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred -CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCCC
Confidence 78899999999975566666899999999 444444444433 4588999999999888887 799999999987 5
Q ss_pred Ceeeee--eccCCccccEEEEEEecCCCEEEEEe-CCCcEEEEEe
Q 007229 223 EKIGEF--SSEDGHHGSIYAVSWSPDGKKVLTVS-ADKSAKVWEI 264 (612)
Q Consensus 223 ~~~~~~--~~~~~~~~~v~~i~~~~~~~~l~~~~-~dg~i~iw~~ 264 (612)
+..... .........+..++|+|+++++++++ .++.+.+|++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~ 207 (343)
T 1ri6_A 163 HLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWEL 207 (343)
T ss_dssp CEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEES
T ss_pred ceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEe
Confidence 543211 11113345788999999999776655 7889999998
No 141
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.95 E-value=2.1e-24 Score=200.19 Aligned_cols=284 Identities=13% Similarity=0.116 Sum_probs=196.9
Q ss_pred EEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEc-CCcEEEEecCCCCe-eeeeec
Q 007229 153 CEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSS-DRKGLIYDGKSGEK-IGEFSS 230 (612)
Q Consensus 153 ~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~-~~~~~~ 230 (612)
..|.+++++++++++.++.|.+||..+++....+..+...+ .++|+|+++++++++. ++.|.+||+.+++. ...+.
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~- 80 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQ- 80 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEE-
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecc-
Confidence 45777778789999999999999999999888777666667 9999999998777766 88999999999987 55552
Q ss_pred cCCccccEEEEEEecCCCEEEEEeCCC---cEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCE
Q 007229 231 EDGHHGSIYAVSWSPDGKKVLTVSADK---SAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGI 307 (612)
Q Consensus 231 ~~~~~~~v~~i~~~~~~~~l~~~~~dg---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (612)
.+..+..+++|+|+++++++...++ .|.+||+ .+++.+..+...
T Consensus 81 --~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~----~~~~~~~~~~~~--------------------------- 127 (331)
T 3u4y_A 81 --EGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSF----LKNKFISTIPIP--------------------------- 127 (331)
T ss_dssp --ECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEET----TTTEEEEEEECC---------------------------
T ss_pred --cCCCCccceEECCCCCEEEEecCCCCcccEEEEEC----CCCCeEEEEECC---------------------------
Confidence 3444444499999999999555443 8999999 777766544321
Q ss_pred EEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCc-EEEEEcCCceeeeeceecccceEEEEeeccEEEEe
Q 007229 308 ISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGA-IIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTA 386 (612)
Q Consensus 308 i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~ 386 (612)
.....+++++....++++...++. +.+|++..........
T Consensus 128 --------------------~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~------------------- 168 (331)
T 3u4y_A 128 --------------------YDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTG------------------- 168 (331)
T ss_dssp --------------------TTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEE-------------------
T ss_pred --------------------CCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecC-------------------
Confidence 233567777432345555566677 9999876432110000
Q ss_pred cCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEE
Q 007229 387 GFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAI 466 (612)
Q Consensus 387 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 466 (612)
...+.....+..++|+|||++++
T Consensus 169 ---------------------------------------------------------~~~~~~~~~~~~~~~spdg~~l~ 191 (331)
T 3u4y_A 169 ---------------------------------------------------------QEFISGGTRPFNITFTPDGNFAF 191 (331)
T ss_dssp ---------------------------------------------------------EEEECSSSSEEEEEECTTSSEEE
T ss_pred ---------------------------------------------------------CccccCCCCccceEECCCCCEEE
Confidence 00011123467899999999766
Q ss_pred EEe-cCCeEEEEEccCccccc-ceeeccccCceEEEEEcCCCcEEEEEc-CCCeEEEEecCCcceee-eccc----cccc
Q 007229 467 VGG-QNGKLHIYSISGNTLTE-EMVLEKHRGAITVIQYSPDVSMFASAD-GNREAIVWDRVSKEVKL-NNML----FHTA 538 (612)
Q Consensus 467 ~~~-~dg~v~i~d~~~~~~~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~-~d~~i~iwd~~~~~~~~-~~~~----~~~~ 538 (612)
+++ .++.|++||+.+++... ...+. ....+..++|+|||++|+.++ .++.|.+||+.+++... ..+. .+..
T Consensus 192 v~~~~~~~v~v~d~~~~~~~~~~~~~~-~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 270 (331)
T 3u4y_A 192 VANLIGNSIGILETQNPENITLLNAVG-TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPR 270 (331)
T ss_dssp EEETTTTEEEEEECSSTTSCEEEEEEE-CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCG
T ss_pred EEeCCCCeEEEEECCCCcccceeeecc-CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCC
Confidence 555 68899999998877511 22333 346678999999999776554 57889999999887621 1111 1122
Q ss_pred c---eeEEEecCCCcEEEEee-cCcEEEEEEccC
Q 007229 539 R---INCLAWSPSSTMVATGS-IDTCVIIYEIGK 568 (612)
Q Consensus 539 ~---i~~~~~s~~~~~l~s~~-~d~~i~iwd~~~ 568 (612)
+ ...++|+|||++|++++ .++.|++||+..
T Consensus 271 ~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~ 304 (331)
T 3u4y_A 271 PLFGANQMALNKTETKLFISANISRELKVFTISG 304 (331)
T ss_dssp GGTTCCCEEECTTSSEEEEEETTTTEEEEEETTS
T ss_pred CcccccceEECCCCCEEEEecCCCCcEEEEEecC
Confidence 2 35589999999886555 567999999987
No 142
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.95 E-value=2.8e-24 Score=200.73 Aligned_cols=229 Identities=11% Similarity=0.122 Sum_probs=161.3
Q ss_pred CEEEEe-c-CCEEEEEeCC-CCc--eeeEeccCCCceEEEEECCCCCEEEEeeCc-CeEEEeecC--CCce-eeeeeeec
Q 007229 31 DTILYC-N-GRSVLIRYLD-KPL--HVEFYGEHGYPVTVARYSPNGEWIASADVS-GSVRIWGTH--NGFV-LKNEFKVL 101 (612)
Q Consensus 31 ~~l~~~-~-~~~i~i~~~~-~~~--~~~~~~~h~~~v~~~~~s~d~~~las~~~d-~~i~iwd~~--~~~~-~~~~~~~~ 101 (612)
++++++ . ++.|.+|+++ +++ .+. ...|...+.+++|+|+|++|++++.+ +.|.+|++. +++. ....+..
T Consensus 5 ~~l~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~- 82 (343)
T 1ri6_A 5 QTVYIASPESQQIHVWNLNHEGALTLTQ-VVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESAL- 82 (343)
T ss_dssp EEEEEEEGGGTEEEEEEECTTSCEEEEE-EEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEC-
T ss_pred EEEEEeCCCCCeEEEEEECCCCcEEEee-eEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeecccccc-
Confidence 344444 3 7999999996 332 233 34578889999999999999988876 999999998 5542 2223333
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec---CCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCC
Q 007229 102 SGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD---SGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGP 178 (612)
Q Consensus 102 ~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 178 (612)
...+..++|+|++++|++++.... .+.+|+.+ ..+.+..+..+ ..+.+++|+|+++++++++..++.|++||+.
T Consensus 83 ~~~~~~~~~s~dg~~l~~~~~~~~--~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~ 159 (343)
T 1ri6_A 83 PGSLTHISTDHQGQFVFVGSYNAG--NVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVS 159 (343)
T ss_dssp SSCCSEEEECTTSSEEEEEETTTT--EEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred CCCCcEEEEcCCCCEEEEEecCCC--eEEEEECCCCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEec
Confidence 348899999999999988876443 46777773 33445555544 3588999999999655555489999999998
Q ss_pred C-Ceeee----cccc-cccceEEEEECCCCCeEEEEE-cCCcEEEEecCC--CCe--eeeeec-cC--CccccEEEEEEe
Q 007229 179 P-FKFKL----SHRE-HSNFVNCIRFSPDGSKLISVS-SDRKGLIYDGKS--GEK--IGEFSS-ED--GHHGSIYAVSWS 244 (612)
Q Consensus 179 ~-~~~~~----~~~~-~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~--~~~--~~~~~~-~~--~~~~~v~~i~~~ 244 (612)
+ ++... .+.. ....+..++|+|+++++++++ .++.+.+|++.. ++. ...+.. .. .....+..++|+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s 239 (343)
T 1ri6_A 160 DDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHIT 239 (343)
T ss_dssp TTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEEC
T ss_pred CCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEEC
Confidence 7 54432 2222 334788999999999876665 789999999953 433 222211 11 113467789999
Q ss_pred cCCCEEEEEe-CCCcEEEEEe
Q 007229 245 PDGKKVLTVS-ADKSAKVWEI 264 (612)
Q Consensus 245 ~~~~~l~~~~-~dg~i~iw~~ 264 (612)
|++++|+++. .++.|.+|++
T Consensus 240 ~dg~~l~v~~~~~~~i~v~d~ 260 (343)
T 1ri6_A 240 PDGRHLYACDRTASLITVFSV 260 (343)
T ss_dssp TTSSEEEEEETTTTEEEEEEE
T ss_pred CCCCEEEEEecCCCEEEEEEE
Confidence 9998887554 6889999998
No 143
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.94 E-value=1.1e-25 Score=205.63 Aligned_cols=234 Identities=16% Similarity=0.089 Sum_probs=183.3
Q ss_pred CCCceeEEEEccCCCEEEEecCCEEEEEeCCC-CceeeEeccC-CCceEEEEECCCCCEEEEee--CcCeEEEeec--CC
Q 007229 17 ERGRGILISGNPKTDTILYCNGRSVLIRYLDK-PLHVEFYGEH-GYPVTVARYSPNGEWIASAD--VSGSVRIWGT--HN 90 (612)
Q Consensus 17 ~~~~v~~~~~s~d~~~l~~~~~~~i~i~~~~~-~~~~~~~~~h-~~~v~~~~~s~d~~~las~~--~d~~i~iwd~--~~ 90 (612)
+.+.+.+++|+|||++|+++.++.|.+||+++ ++......+| ...|.+++|+|||++|++++ .++...||.+ .+
T Consensus 40 ~~~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~ 119 (297)
T 2ojh_A 40 TPELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTG 119 (297)
T ss_dssp ESSCCEEEEECTTSSEEEEEETTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTC
T ss_pred CCcceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCC
Confidence 45689999999999999999999999999999 8877766666 47899999999999999998 3355566555 44
Q ss_pred CceeeeeeeecCCCeEEEEECCCCCEEEE-EeCCCCeeeEEEEEec-CCceeeeeccCCceEEEEEEcCCCCEEEEEeec
Q 007229 91 GFVLKNEFKVLSGRIDDLQWSPDGLRIVA-CGDGKGKSFVRAFMWD-SGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGE 168 (612)
Q Consensus 91 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~-~~~~~~~~~i~i~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 168 (612)
++ ...+..+ ..+..++|+||+++|+. +..++ .+.+|.++ .+.....+..|...+.+++|+|+++++++++..
T Consensus 120 ~~--~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~ 193 (297)
T 2ojh_A 120 GT--PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQ---VFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSR 193 (297)
T ss_dssp CC--CEECCSS-SSEEEEEECTTSSEEEEEEEETT---EEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECT
T ss_pred Cc--eEEeecC-CCccceEECCCCCEEEEEECCCC---ceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecC
Confidence 43 2233333 35899999999999884 44554 46788876 344566777888999999999999965555557
Q ss_pred CCeEEEEeCC-CCeeeecccccccceEEEEECCCCCeEEEEEcC-----------CcEEEEecCCCCeeeeeeccCCccc
Q 007229 169 DFLVNFYEGP-PFKFKLSHREHSNFVNCIRFSPDGSKLISVSSD-----------RKGLIYDGKSGEKIGEFSSEDGHHG 236 (612)
Q Consensus 169 d~~i~~wd~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----------g~i~vwd~~~~~~~~~~~~~~~~~~ 236 (612)
++.+++|++. .+.....+..|...+.+++|+|++++|++++.+ +.|++||+.+++....... .+|..
T Consensus 194 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~ 272 (297)
T 2ojh_A 194 TGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDL-FGGQG 272 (297)
T ss_dssp TSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEE-EESTT
T ss_pred CCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeecc-CCCCc
Confidence 8999999876 455566677788889999999999999988876 5699999988876433321 25677
Q ss_pred cEEEEEEecCCCEEEEEeCCC
Q 007229 237 SIYAVSWSPDGKKVLTVSADK 257 (612)
Q Consensus 237 ~v~~i~~~~~~~~l~~~~~dg 257 (612)
.+..++|+|++++|++++.+.
T Consensus 273 ~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 273 TMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp TSCSCCBCTTSSEEEEEEECC
T ss_pred ccccceECCCCCEEEEEEecc
Confidence 889999999999998887653
No 144
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.94 E-value=1e-23 Score=197.59 Aligned_cols=247 Identities=12% Similarity=0.070 Sum_probs=195.0
Q ss_pred CceeEEEEccCCCEEEEec--------CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEE-eeCcCeEEEeecC
Q 007229 19 GRGILISGNPKTDTILYCN--------GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIAS-ADVSGSVRIWGTH 89 (612)
Q Consensus 19 ~~v~~~~~s~d~~~l~~~~--------~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las-~~~d~~i~iwd~~ 89 (612)
..+..++|+|||+++++++ ++.|.+||..+++.+..+.. ...+..++|+|||++++. ...++.|.+||..
T Consensus 41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~ 119 (353)
T 3vgz_A 41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAIDAK 119 (353)
T ss_dssp SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEeCC
Confidence 4678899999999998887 46899999999998887764 445789999999996554 5567999999999
Q ss_pred CCceeeeeeeecCC---------CeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCC
Q 007229 90 NGFVLKNEFKVLSG---------RIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRP 160 (612)
Q Consensus 90 ~~~~~~~~~~~~~~---------~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 160 (612)
+++. ...+..+.. .+..++|+|+|+++++++..... .+.+++.++++.+..+..+...+..++|+|+++
T Consensus 120 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~-~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~ 197 (353)
T 3vgz_A 120 TGEV-KGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKES-VIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGK 197 (353)
T ss_dssp TCCE-EEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSC-EEEEEETTTTEEEEEECCCCTTCCCCEEETTTT
T ss_pred CCee-EEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCc-eEEEEcCCCCceEEEecCCCCccceEEECCCCC
Confidence 9884 334444332 27899999999988887732111 456666668888888886777788999999999
Q ss_pred EEEEEeecCCeEEEEeCCCCeeeecccc----cccceEEEEECCCCCeEEEEEcC-CcEEEEecCCCCeeeeeeccCCcc
Q 007229 161 FRIATCGEDFLVNFYEGPPFKFKLSHRE----HSNFVNCIRFSPDGSKLISVSSD-RKGLIYDGKSGEKIGEFSSEDGHH 235 (612)
Q Consensus 161 ~~l~~~~~d~~i~~wd~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~d-g~i~vwd~~~~~~~~~~~~~~~~~ 235 (612)
+ +++++.++.|.+||..+++....+.. +...+..++|+|+++++++++.+ +.|.+||+.+++.+..+...
T Consensus 198 ~-l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~---- 272 (353)
T 3vgz_A 198 R-LYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAP---- 272 (353)
T ss_dssp E-EEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECS----
T ss_pred E-EEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcC----
Confidence 5 77778899999999999988876553 55668899999999988777654 89999999999988877421
Q ss_pred ccEEEEEEecCCCEEEEEe-CCCcEEEEEeecCCCCCeeEeeee
Q 007229 236 GSIYAVSWSPDGKKVLTVS-ADKSAKVWEILEDGSGGRVIKTFA 278 (612)
Q Consensus 236 ~~v~~i~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~ 278 (612)
. ...++|+|++++++++. .++.|.+||. .+++.+..+.
T Consensus 273 ~-~~~~~~s~dg~~l~v~~~~~~~v~~~d~----~~~~~~~~~~ 311 (353)
T 3vgz_A 273 E-SLAVLFNPARNEAYVTHRQAGKVSVIDA----KSYKVVKTFD 311 (353)
T ss_dssp S-CCCEEEETTTTEEEEEETTTTEEEEEET----TTTEEEEEEE
T ss_pred C-CceEEECCCCCEEEEEECCCCeEEEEEC----CCCeEEEEEe
Confidence 1 25689999999766665 6899999999 7777776654
No 145
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.94 E-value=1.3e-24 Score=198.41 Aligned_cols=218 Identities=15% Similarity=0.075 Sum_probs=170.8
Q ss_pred CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCC-Cceeeeeeeec-CCCeEEEEECCCCC
Q 007229 38 GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHN-GFVLKNEFKVL-SGRIDDLQWSPDGL 115 (612)
Q Consensus 38 ~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~-~~~~~~~~~~~-~~~i~~~~~s~~~~ 115 (612)
++.|++||+.+++... +..|...|.+++|+|||++|++++ ++.|.+||+.+ ++ .......+ ...+.+++|+||++
T Consensus 21 ~~~i~~~d~~~~~~~~-~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~spdg~ 97 (297)
T 2ojh_A 21 RSSIEIFNIRTRKMRV-VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPS-PEKVDTGFATICNNDHGISPDGA 97 (297)
T ss_dssp CEEEEEEETTTTEEEE-EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCS-CEECCCTTCCCBCSCCEECTTSS
T ss_pred ceeEEEEeCCCCceee-eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCC-ceEeccccccccccceEECCCCC
Confidence 6899999999988765 566999999999999999999986 78999999998 76 33344444 46789999999999
Q ss_pred EEEEEeCCCCeeeEEEEEecC-CceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeC--CCCeeeecccccccc
Q 007229 116 RIVACGDGKGKSFVRAFMWDS-GTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEG--PPFKFKLSHREHSNF 192 (612)
Q Consensus 116 ~l~~~~~~~~~~~i~i~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~--~~~~~~~~~~~~~~~ 192 (612)
+|++++.+... ...+|.++. +.....+..+. .+..++|+|++++++++++.++.+++|++ .+++ ...+..+...
T Consensus 98 ~l~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~ 174 (297)
T 2ojh_A 98 LYAISDKVEFG-KSAIYLLPSTGGTPRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGV-ETRLTHGEGR 174 (297)
T ss_dssp EEEEEECTTTS-SCEEEEEETTCCCCEECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCC-EEECCCSSSC
T ss_pred EEEEEEeCCCC-cceEEEEECCCCceEEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECCCCc-ceEcccCCCc
Confidence 99999843211 346888873 33344554444 48899999999976668889999999985 4443 3456677888
Q ss_pred eEEEEECCCCCeEEEEE-cCCcEEEEecC-CCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCC-----------CcE
Q 007229 193 VNCIRFSPDGSKLISVS-SDRKGLIYDGK-SGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSAD-----------KSA 259 (612)
Q Consensus 193 v~~~~~s~~~~~l~~~~-~dg~i~vwd~~-~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d-----------g~i 259 (612)
+.+++|+|++++|++++ .++.+++|++. .+.....+ ..+...+..++|+|++++|++++.+ +.|
T Consensus 175 ~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~---~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l 251 (297)
T 2ojh_A 175 NDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERI---TDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRV 251 (297)
T ss_dssp EEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEEC---CCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEE
T ss_pred cccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEE---ecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEE
Confidence 99999999999888776 48999999986 45555555 2667789999999999999988766 458
Q ss_pred EEEEe
Q 007229 260 KVWEI 264 (612)
Q Consensus 260 ~iw~~ 264 (612)
.+||+
T Consensus 252 ~~~d~ 256 (297)
T 2ojh_A 252 QLMDM 256 (297)
T ss_dssp EEEET
T ss_pred EEEec
Confidence 88887
No 146
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.94 E-value=1.8e-24 Score=201.42 Aligned_cols=300 Identities=10% Similarity=0.002 Sum_probs=206.0
Q ss_pred CEEEEEeCCCCeeeEEEEEecCCceeeeeccCCc--eEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccc-c--
Q 007229 115 LRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSR--RVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHRE-H-- 189 (612)
Q Consensus 115 ~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~-~-- 189 (612)
++|++++.++ .+.+|+..+++.+..+..... .+..++|+|+++++++++..++.|.+||+.+++.+..+.. +
T Consensus 2 ~~~v~~~~~~---~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~ 78 (337)
T 1pby_B 2 DYILAPARPD---KLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPE 78 (337)
T ss_dssp EEEEEEETTT---EEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTT
T ss_pred cEEEEcCCCC---eEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcc
Confidence 3677777776 466777778888877763332 5788999999987778888889999999999988766542 1
Q ss_pred --ccceEEEEECCCCCeEEEEE------------cCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeC
Q 007229 190 --SNFVNCIRFSPDGSKLISVS------------SDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSA 255 (612)
Q Consensus 190 --~~~v~~~~~s~~~~~l~~~~------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~ 255 (612)
...+..++|+|+|++|+++. .++.|.+||+.+++....+. ....+..++|+|++++++++
T Consensus 79 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~----~~~~~~~~~~s~dg~~l~~~-- 152 (337)
T 1pby_B 79 ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE----APRQITMLAWARDGSKLYGL-- 152 (337)
T ss_dssp EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE----CCSSCCCEEECTTSSCEEEE--
T ss_pred cccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEe----CCCCcceeEECCCCCEEEEe--
Confidence 23677899999999998886 57999999999988887772 34557789999999988887
Q ss_pred CCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEE
Q 007229 256 DKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTA 335 (612)
Q Consensus 256 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~ 335 (612)
++.|.+||+ .+++....+.... +..++ .+
T Consensus 153 ~~~i~~~d~----~~~~~~~~~~~~~--------------------------------------------~~~~~---~~ 181 (337)
T 1pby_B 153 GRDLHVMDP----EAGTLVEDKPIQS--------------------------------------------WEAET---YA 181 (337)
T ss_dssp SSSEEEEET----TTTEEEEEECSTT--------------------------------------------TTTTT---BC
T ss_pred CCeEEEEEC----CCCcEeeeeeccc--------------------------------------------cCCCc---ee
Confidence 688999999 7776655443221 00000 11
Q ss_pred EecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcc
Q 007229 336 LKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPL 415 (612)
Q Consensus 336 ~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 415 (612)
++ ++..++..+..+....+ .
T Consensus 182 s~-dg~~l~~~~~~~~~~~~--------------------------------------~--------------------- 201 (337)
T 1pby_B 182 QP-DVLAVWNQHESSGVMAT--------------------------------------P--------------------- 201 (337)
T ss_dssp CC-BCCCCCCCCTTTTEEEE--------------------------------------E---------------------
T ss_pred CC-CccEEeeeccCCCceee--------------------------------------e---------------------
Confidence 21 12222222211111100 0
Q ss_pred eeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccC
Q 007229 416 DLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRG 495 (612)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~ 495 (612)
.......++..... .....|.+||+.+++.. ...+..+..
T Consensus 202 --------------------------------------~~~~~~~~~~~~~~-~~~~~v~~~d~~~~~~~-~~~~~~~~~ 241 (337)
T 1pby_B 202 --------------------------------------FYTARKDIDPADPT-AYRTGLLTMDLETGEMA-MREVRIMDV 241 (337)
T ss_dssp --------------------------------------EEEEBTTSCTTSGG-GEEEEEEEEETTTCCEE-EEEEEECSS
T ss_pred --------------------------------------eecccccccccccc-ccccceEEEeCCCCCce-EeecCCCCC
Confidence 00000000000000 11126899999988764 444556667
Q ss_pred ceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceee
Q 007229 496 AITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRIT 575 (612)
Q Consensus 496 ~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 575 (612)
.+.+++|+||+++++++ ++.|++||+.+++.+.. +. ....+.+++|+|||++|++++.++.|++||+.+ + +.+.
T Consensus 242 ~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~-~~-~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~-~-~~~~ 315 (337)
T 1pby_B 242 FYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKR-VP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAET-L-EKKG 315 (337)
T ss_dssp CEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEE-EE-CSSCCCEEEECTTSCEEEEESBSSEEEEEETTT-C-CEEE
T ss_pred ceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcce-ec-CCCceeeEEECCCCCEEEEEcCCCcEEEEECcC-C-cEEE
Confidence 88899999999999988 78999999999887633 33 335678999999999999999999999999998 5 5555
Q ss_pred eeccc
Q 007229 576 IKNAH 580 (612)
Q Consensus 576 ~~~~h 580 (612)
.+..+
T Consensus 316 ~~~~~ 320 (337)
T 1pby_B 316 QVDLP 320 (337)
T ss_dssp EEECG
T ss_pred EEEcC
Confidence 55444
No 147
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.94 E-value=9.9e-25 Score=224.62 Aligned_cols=346 Identities=11% Similarity=0.052 Sum_probs=224.9
Q ss_pred CceeEeeeeeccCCCCCCCceeEEEEccCCCEEEEecCCEEEEEeCCCCceeeEeccCCC---ceEEEEECCCCCEEEEe
Q 007229 1 MAEVHLSETYACAPSTERGRGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGY---PVTVARYSPNGEWIASA 77 (612)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~~~~h~~---~v~~~~~s~d~~~las~ 77 (612)
|..++++.++..... ..-..++|+|||++++.+.++.|++||+.+++....+.+|.. .|.+++|||||++||++
T Consensus 1 ~~~~~~~~~~~~~~~---~~~~~~~~s~dg~~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~ 77 (719)
T 1z68_A 1 MRALTLKDILNGTFS---YKTFFPNWISGQEYLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLE 77 (719)
T ss_dssp CBCCCHHHHHHTTTC---CCCCCCEESSSSEEEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEE
T ss_pred CCcccHHHHhcCccc---CCCCccEECCCCeEEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEE
Confidence 445666666655421 223478999999877777789999999999998887776654 49999999999999998
Q ss_pred eC---------cCeEEEeecCCCceee-eeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeee-ccC
Q 007229 78 DV---------SGSVRIWGTHNGFVLK-NEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDF-DGH 146 (612)
Q Consensus 78 ~~---------d~~i~iwd~~~~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~-~~~ 146 (612)
+. ++.|++||+.+++.+. ..+ ...+..++|||||++|+++.++. +.+|..++++..... .++
T Consensus 78 ~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~~~~----i~~~~~~~g~~~~l~~~~~ 150 (719)
T 1z68_A 78 SDYSKLWRYSYTATYYIYDLSNGEFVRGNEL---PRPIQYLCWSPVGSKLAYVYQNN----IYLKQRPGDPPFQITFNGR 150 (719)
T ss_dssp EEEEECSSSCEEEEEEEEETTTTEECCSSCC---CSSBCCEEECSSTTCEEEEETTE----EEEESSTTSCCEECCCCCB
T ss_pred ecCceeEEeecceEEEEEECCCCccccceec---CcccccceECCCCCEEEEEECCe----EEEEeCCCCCcEEEecCCC
Confidence 76 7899999999987310 122 35688999999999999987542 444444456554332 233
Q ss_pred CceE-----------------EEEEEcCCCCEEEEEeecCC----------------------------------eEEEE
Q 007229 147 SRRV-----------------LSCEFKPTRPFRIATCGEDF----------------------------------LVNFY 175 (612)
Q Consensus 147 ~~~v-----------------~~~~~~~~~~~~l~~~~~d~----------------------------------~i~~w 175 (612)
...+ .+++|+|||++ |++++.|. .|++|
T Consensus 151 ~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~-la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~ 229 (719)
T 1z68_A 151 ENKIFNGIPDWVYEEEMLATKYALWWSPNGKF-LAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFII 229 (719)
T ss_dssp TTTEEESSCCHHHHHHTTCSSCCEEECTTSSE-EEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEE
T ss_pred cCCeEcccccceeeeecccCcccEEECCCCCE-EEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEE
Confidence 3322 48999999995 77766542 78999
Q ss_pred eCCCCeee--------ecccccccceEEEEECCCCCeEEEEEcCC----cEEEEe----cCCCCeeeeee-ccCCccccE
Q 007229 176 EGPPFKFK--------LSHREHSNFVNCIRFSPDGSKLISVSSDR----KGLIYD----GKSGEKIGEFS-SEDGHHGSI 238 (612)
Q Consensus 176 d~~~~~~~--------~~~~~~~~~v~~~~~s~~~~~l~~~~~dg----~i~vwd----~~~~~~~~~~~-~~~~~~~~v 238 (612)
|+.+++.. ..+.+|...+..++|+||++++++....+ .|.+|| +.+++....+. ....+...+
T Consensus 230 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~ 309 (719)
T 1z68_A 230 DTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWA 309 (719)
T ss_dssp ESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCS
T ss_pred ECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceE
Confidence 99988753 22446888899999999987776644332 488899 77776554431 002455555
Q ss_pred E-----EEEEecCCCEEEE--EeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcC-----C
Q 007229 239 Y-----AVSWSPDGKKVLT--VSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLG-----G 306 (612)
Q Consensus 239 ~-----~i~~~~~~~~l~~--~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~ 306 (612)
. .+.|+|||+.++. ...+|...+|-.+. ..++ ...+.... ..... + .. ++++.++..+.+ +
T Consensus 310 ~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~--~~~~-~~~lt~~~-~~v~~-~-~~-~d~~~i~~~~~~~~~~~~ 382 (719)
T 1z68_A 310 GGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKD--TVEN-AIQITSGK-WEAIN-I-FR-VTQDSLFYSSNEFEEYPG 382 (719)
T ss_dssp SSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESS--CSTT-CEECSCSS-SCEEE-E-EE-ECSSEEEEEESCGGGCTT
T ss_pred ccccCCccEECCCCCeEEEEEEccCCceEEEEEEC--CCCc-eEecccCc-eEEEE-E-EE-EeCCEEEEEEecCCCCCc
Confidence 5 7899999996654 44566544444321 3333 22222211 11111 1 11 266667666654 7
Q ss_pred EEEEEEcCCCCC--Cceeec----CcccceeEEEEEecCCcEEEEEecC--CcEEEEEcCCceeee
Q 007229 307 IISIFSASNLDK--APLSFS----GHVKNVSTLTALKISQQTILSSSYD--GAIIKWIRGVGYSSK 364 (612)
Q Consensus 307 ~i~~~~~~~~~~--~~~~~~----~~~~~v~~~~~~~~~~~~l~~~~~d--g~i~~wd~~~~~~~~ 364 (612)
...+|.+..... ....+. +|...+..+.|++....++++++.. ..+.+||+.+++...
T Consensus 383 ~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~~~ 448 (719)
T 1z68_A 383 RRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQEIK 448 (719)
T ss_dssp CBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCCEEE
T ss_pred eEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCCEEE
Confidence 788887654211 122222 3566777888885434555555544 468899987776543
No 148
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.93 E-value=9.7e-23 Score=191.00 Aligned_cols=213 Identities=12% Similarity=0.097 Sum_probs=168.1
Q ss_pred CCCceEEEEECCCCCEEEEeeC-------cCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEE
Q 007229 58 HGYPVTVARYSPNGEWIASADV-------SGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVR 130 (612)
Q Consensus 58 h~~~v~~~~~s~d~~~las~~~-------d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~ 130 (612)
....+..++|+|+|++|++++. ++.|.+||..+++. ...+.. ...+..++|+|+|++++++..... .+.
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~-~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~--~v~ 114 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEV-TQAIHN-DLKPFGATINNTTQTLWFGNTVNS--AVT 114 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCE-EEEEEE-SSCCCSEEEETTTTEEEEEETTTT--EEE
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeE-EEEEec-CCCcceEEECCCCCEEEEEecCCC--EEE
Confidence 4457889999999999888763 56899999999874 334433 456889999999998877766543 466
Q ss_pred EEEecCCceeeeeccCCc---------eEEEEEEcCCCCEEEEEe-ecCCeEEEEeCCCCeeeecccccccceEEEEECC
Q 007229 131 AFMWDSGTTVGDFDGHSR---------RVLSCEFKPTRPFRIATC-GEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSP 200 (612)
Q Consensus 131 i~~~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~~l~~~-~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~ 200 (612)
+|+.++++.+..+..+.. .+.+++|+|+++++++++ +.++.|.+||..+++....+..+...+.+++|+|
T Consensus 115 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~ 194 (353)
T 3vgz_A 115 AIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDS 194 (353)
T ss_dssp EEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEET
T ss_pred EEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECC
Confidence 777778888888776543 278999999999655554 3588999999999999888875666789999999
Q ss_pred CCCeEEEEEcCCcEEEEecCCCCeeeeeecc-CCccccEEEEEEecCCCEEEEEeCC-CcEEEEEeecCCCCCeeEeeee
Q 007229 201 DGSKLISVSSDRKGLIYDGKSGEKIGEFSSE-DGHHGSIYAVSWSPDGKKVLTVSAD-KSAKVWEILEDGSGGRVIKTFA 278 (612)
Q Consensus 201 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~~~~v~~i~~~~~~~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~ 278 (612)
++++|++++.++.+.+||+.+++....+... .++...+..++|+|+++++++++.+ +.|.+||+ .+++.+..+.
T Consensus 195 dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~----~~~~~~~~~~ 270 (353)
T 3vgz_A 195 EGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDT----RNGNILAKVA 270 (353)
T ss_dssp TTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEET----TTCCEEEEEE
T ss_pred CCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEEC----CCCcEEEEEE
Confidence 9999999999999999999999988777431 1245678899999999987777654 89999999 7777665544
No 149
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.93 E-value=6.8e-24 Score=197.55 Aligned_cols=277 Identities=14% Similarity=0.076 Sum_probs=190.1
Q ss_pred EEEEeecCCeEEEEeCCCCeeeeccccccc--ceEEEEECCCCCeEEEE-EcCCcEEEEecCCCCeeeeeeccC--Cccc
Q 007229 162 RIATCGEDFLVNFYEGPPFKFKLSHREHSN--FVNCIRFSPDGSKLISV-SSDRKGLIYDGKSGEKIGEFSSED--GHHG 236 (612)
Q Consensus 162 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~--~~~~ 236 (612)
++++++.++.|.+||..+++.+..+..... .+..++|+|++++++++ ..++.|.+||+.+++.+..+.... .+..
T Consensus 3 ~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~ 82 (337)
T 1pby_B 3 YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVK 82 (337)
T ss_dssp EEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEE
T ss_pred EEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccc
Confidence 589999999999999999988877653221 48899999999877554 457899999999999887763211 0123
Q ss_pred cEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCC
Q 007229 237 SIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNL 316 (612)
Q Consensus 237 ~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 316 (612)
.+..++|+|+|++++++.... .. ..
T Consensus 83 ~~~~~~~s~dg~~l~~~~~~~-----~~----~~---------------------------------------------- 107 (337)
T 1pby_B 83 SLFGAALSPDGKTLAIYESPV-----RL----EL---------------------------------------------- 107 (337)
T ss_dssp CTTCEEECTTSSEEEEEEEEE-----EE----CS----------------------------------------------
T ss_pred cccceEECCCCCEEEEEeccc-----cc----cc----------------------------------------------
Confidence 567899999999888875110 00 00
Q ss_pred CCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEe
Q 007229 317 DKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVP 396 (612)
Q Consensus 317 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~ 396 (612)
...- ..++.|.+||+.+++......
T Consensus 108 -----------------------~~~~---~~~~~i~v~d~~~~~~~~~~~----------------------------- 132 (337)
T 1pby_B 108 -----------------------THFE---VQPTRVALYDAETLSRRKAFE----------------------------- 132 (337)
T ss_dssp -----------------------SCEE---ECCCEEEEEETTTTEEEEEEE-----------------------------
T ss_pred -----------------------cccc---ccCceEEEEECCCCcEEEEEe-----------------------------
Confidence 0000 012333444433322111000
Q ss_pred cCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEE
Q 007229 397 LCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHI 476 (612)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i 476 (612)
....+.+++|+|++++|+++ ++.|++
T Consensus 133 ----------------------------------------------------~~~~~~~~~~s~dg~~l~~~--~~~i~~ 158 (337)
T 1pby_B 133 ----------------------------------------------------APRQITMLAWARDGSKLYGL--GRDLHV 158 (337)
T ss_dssp ----------------------------------------------------CCSSCCCEEECTTSSCEEEE--SSSEEE
T ss_pred ----------------------------------------------------CCCCcceeEECCCCCEEEEe--CCeEEE
Confidence 00124567899999988887 678999
Q ss_pred EEccCcccccceeecccc--CceEEEEEcCCCcEEEEEcCC-C-----------------------eEEEEecCCcceee
Q 007229 477 YSISGNTLTEEMVLEKHR--GAITVIQYSPDVSMFASADGN-R-----------------------EAIVWDRVSKEVKL 530 (612)
Q Consensus 477 ~d~~~~~~~~~~~~~~~~--~~i~~~~~s~~~~~l~~~~~d-~-----------------------~i~iwd~~~~~~~~ 530 (612)
||+.+++.. ..+..+. .++ .|+|+++.++..+.+ + .|.+||+.+++...
T Consensus 159 ~d~~~~~~~--~~~~~~~~~~~~---~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~ 233 (337)
T 1pby_B 159 MDPEAGTLV--EDKPIQSWEAET---YAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAM 233 (337)
T ss_dssp EETTTTEEE--EEECSTTTTTTT---BCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEE
T ss_pred EECCCCcEe--eeeeccccCCCc---eeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceE
Confidence 999888763 3333222 333 789998877655433 2 47899999988753
Q ss_pred ecccccccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeecccccCeeeEEEe-cCceEEEccCCCeEEEEEe
Q 007229 531 NNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFM-DDFNVVSSGEDACIRVWRL 609 (612)
Q Consensus 531 ~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~~~d~~i~~w~~ 609 (612)
..+..+...+.+++|+|||++|+++ ++.|++||+.+ + +.+..+.. ...+.+++|+ ++++|++++.|+.|++||+
T Consensus 234 ~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~-~-~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~ 308 (337)
T 1pby_B 234 REVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEK-N-ASIKRVPL-PHSYYSVNVSTDGSTVWLGGALGDLAAYDA 308 (337)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTT-T-EEEEEEEC-SSCCCEEEECTTSCEEEEESBSSEEEEEET
T ss_pred eecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCC-C-cCcceecC-CCceeeEEECCCCCEEEEEcCCCcEEEEEC
Confidence 3344566678899999999999888 78999999987 5 55555543 3467899999 8888888899999999998
Q ss_pred ccC
Q 007229 610 ATE 612 (612)
Q Consensus 610 ~~~ 612 (612)
+++
T Consensus 309 ~~~ 311 (337)
T 1pby_B 309 ETL 311 (337)
T ss_dssp TTC
T ss_pred cCC
Confidence 753
No 150
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.93 E-value=5e-22 Score=185.30 Aligned_cols=185 Identities=9% Similarity=0.032 Sum_probs=124.3
Q ss_pred CcCeEEEeecC--CCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCc--eeeeeccCCceEEEEE
Q 007229 79 VSGSVRIWGTH--NGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGT--TVGDFDGHSRRVLSCE 154 (612)
Q Consensus 79 ~d~~i~iwd~~--~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~--~~~~~~~~~~~v~~~~ 154 (612)
.++.|.+|++. +++........+...+..++|+|||+ |++++..+....+.+|..++++ .+..+..+...+..++
T Consensus 14 ~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a 92 (347)
T 3hfq_A 14 TSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVA 92 (347)
T ss_dssp SCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEE
T ss_pred CCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEE
Confidence 35567777765 44433324455667888999999999 6666653222256777776655 4555566788889999
Q ss_pred EcCCCCEEEEEeecCCeEEEEeCCC-Ce--eeecccc---------cccceEEEEECCCCCeEEEEEcCCcEEEEecC-C
Q 007229 155 FKPTRPFRIATCGEDFLVNFYEGPP-FK--FKLSHRE---------HSNFVNCIRFSPDGSKLISVSSDRKGLIYDGK-S 221 (612)
Q Consensus 155 ~~~~~~~~l~~~~~d~~i~~wd~~~-~~--~~~~~~~---------~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~-~ 221 (612)
|+|++++++++...++.|.+|++.. +. .+..+.. +...+.+++|+|+|+++++...++.|.+|++. +
T Consensus 93 ~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~ 172 (347)
T 3hfq_A 93 VDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDA 172 (347)
T ss_dssp EETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTT
T ss_pred ECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCC
Confidence 9999996444444789999999862 22 2222221 12348899999999955555568899999998 4
Q ss_pred CCeeeeeeccCCccccEEEEEEecCCCEEEEE-eCCCcEEEEEe
Q 007229 222 GEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTV-SADKSAKVWEI 264 (612)
Q Consensus 222 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~~dg~i~iw~~ 264 (612)
++..............+..++|+|||++++++ ..++.+.+|++
T Consensus 173 g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~ 216 (347)
T 3hfq_A 173 GQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKY 216 (347)
T ss_dssp SCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred CcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEe
Confidence 54332211111233467889999999976665 45788999998
No 151
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.92 E-value=9.9e-23 Score=209.24 Aligned_cols=243 Identities=11% Similarity=0.085 Sum_probs=167.2
Q ss_pred eEeeeeeccCCCCCCCceeEEEEccCCCEEEEecCCEEEEEeCCCCceeeEeccCCCc-----eEEEEECCCCCEEEEee
Q 007229 4 VHLSETYACAPSTERGRGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGYP-----VTVARYSPNGEWIASAD 78 (612)
Q Consensus 4 ~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~~~~h~~~-----v~~~~~s~d~~~las~~ 78 (612)
++++.++.... +....+++|+|||++++.+ ++.|.+||+.+++....+.+|... ...++|||||++||.++
T Consensus 5 ~tl~~~~~~~~---~~~~~~~~w~~dg~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~ 80 (740)
T 4a5s_A 5 YTLTDYLKNTY---RLKLYSLRWISDHEYLYKQ-ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEY 80 (740)
T ss_dssp CCHHHHHHTCS---CCCCCCEEECSSSEEEEEE-TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEE
T ss_pred eeHHHHhcCcc---cccccccEECCCCcEEEEc-CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEE
Confidence 34455555433 4466789999999999887 999999999999988888888643 23478999999999998
Q ss_pred Cc---------CeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeee-eccCCc
Q 007229 79 VS---------GSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGD-FDGHSR 148 (612)
Q Consensus 79 ~d---------~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~-~~~~~~ 148 (612)
.+ +.+.+||+.+++. ..+..+...+...+|||||+.||.+.+.. |.++..++++..+. ..++..
T Consensus 81 ~~~~~~r~~~~~~~~~~d~~~~~~--~~l~~~~~~~~~~~~SPdG~~la~~~~~~----i~~~~~~~~~~~~lt~~g~~~ 154 (740)
T 4a5s_A 81 NYVKQWRHSYTASYDIYDLNKRQL--ITEERIPNNTQWVTWSPVGHKLAYVWNND----IYVKIEPNLPSYRITWTGKED 154 (740)
T ss_dssp EEEECSSSCEEEEEEEEETTTTEE--CCSSCCCTTEEEEEECSSTTCEEEEETTE----EEEESSTTSCCEECCSCCBTT
T ss_pred CCeeeEEEccceEEEEEECCCCcE--EEcccCCCcceeeEECCCCCEEEEEECCe----EEEEECCCCceEEEcCCCCcc
Confidence 76 5677999999873 24667788999999999999999997643 33444445554332 223333
Q ss_pred eE-----------------EEEEEcCCCCEEEEEeecC-CeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEc
Q 007229 149 RV-----------------LSCEFKPTRPFRIATCGED-FLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSS 210 (612)
Q Consensus 149 ~v-----------------~~~~~~~~~~~~l~~~~~d-~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 210 (612)
.+ ..+.|||||++ |+..+.| +.+.+|++...... ..+...+..+.+.+.|... .
T Consensus 155 ~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~-la~~~~d~~~v~~~~~~~~~~~---~~~~~~~~~~~yp~~G~~~----~ 226 (740)
T 4a5s_A 155 IIYNGITDWVYEEEVFSAYSALWWSPNGTF-LAYAQFNDTEVPLIEYSFYSDE---SLQYPKTVRVPYPKAGAVN----P 226 (740)
T ss_dssp TEEESBCCHHHHHHTSSSSBCEEECTTSSE-EEEEEEECTTCCEEEEEECCST---TCSSCEEEEEECCBTTSCC----C
T ss_pred ceecCcccccccchhcCCCcceEECCCCCE-EEEEEEcccCCceEEEEeecCC---CCCCCcceeecCCCCcCcC----C
Confidence 22 34899999996 6665544 55888875322111 0345567778888777532 2
Q ss_pred CCcEEEEecCC---CC--eeeeeecc---CCccccEEEEEEecCCCEEEEEeCC----CcEEEEEe
Q 007229 211 DRKGLIYDGKS---GE--KIGEFSSE---DGHHGSIYAVSWSPDGKKVLTVSAD----KSAKVWEI 264 (612)
Q Consensus 211 dg~i~vwd~~~---~~--~~~~~~~~---~~~~~~v~~i~~~~~~~~l~~~~~d----g~i~iw~~ 264 (612)
..+|++||+.+ ++ ....+... .++...+..++|+|||+.++..... ..|.+||+
T Consensus 227 ~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~ 292 (740)
T 4a5s_A 227 TVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDY 292 (740)
T ss_dssp EEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEE
T ss_pred eeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEEC
Confidence 23689999998 73 22233111 0377789999999999976655332 25777776
No 152
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.92 E-value=3.1e-24 Score=214.93 Aligned_cols=249 Identities=13% Similarity=0.077 Sum_probs=181.9
Q ss_pred CceeEeeeeeccCCCCCCCceeEEEEccCCCEEEEec--CCEEEEEeCCCCceeeEeccCC-CceEEEEECCCCCEEEEe
Q 007229 1 MAEVHLSETYACAPSTERGRGILISGNPKTDTILYCN--GRSVLIRYLDKPLHVEFYGEHG-YPVTVARYSPNGEWIASA 77 (612)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~--~~~i~i~~~~~~~~~~~~~~h~-~~v~~~~~s~d~~~las~ 77 (612)
||.++-.+++-.....+...|.+++|+|||++||+++ ++.+.||++++++..+ +..|. ..+..++|||| ++++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~-lt~~~~~~~~~~~~spd-~~l~~~ 81 (582)
T 3o4h_A 4 IMPVEFSRIVRDVERLIAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVK-LNREPINSVLDPHYGVG-RVILVR 81 (582)
T ss_dssp --CCCHHHHHHHHHHHHHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEE-CCSSCCSEECEECTTCS-EEEEEE
T ss_pred EeeccHHHHHHHHHHHhccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEe-eecccccccccccCCCC-eEEEEe
Confidence 5555555554333334456799999999999999986 7899999997776655 55555 79999999999 888877
Q ss_pred eC---cCeEEEeecCC--CceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEE
Q 007229 78 DV---SGSVRIWGTHN--GFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLS 152 (612)
Q Consensus 78 ~~---d~~i~iwd~~~--~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~ 152 (612)
+. +...+||.+.. ..... .+.. ...+...+|+|||+.++..+...+. ..+|+.++++.......+. .+
T Consensus 82 ~~~~g~~~~~l~~~~~~~~g~~~-~l~~-~~~~~~~~~s~dg~~~~~~s~~~~~--~~l~d~~~g~~~~l~~~~~---~~ 154 (582)
T 3o4h_A 82 DVSKGAEQHALFKVNTSRPGEEQ-RLEA-VKPMRILSGVDTGEAVVFTGATEDR--VALYALDGGGLRELARLPG---FG 154 (582)
T ss_dssp ECSTTSCCEEEEEEETTSTTCCE-ECTT-SCSBEEEEEEECSSCEEEEEECSSC--EEEEEEETTEEEEEEEESS---CE
T ss_pred ccCCCCcceEEEEEeccCCCccc-cccC-CCCceeeeeCCCCCeEEEEecCCCC--ceEEEccCCcEEEeecCCC---ce
Confidence 65 45566765543 22122 2222 2234567889988754443322221 3477777776655444333 78
Q ss_pred EEEcCCCCEEEEEeecC----CeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCC--cEEEEecCCCCeee
Q 007229 153 CEFKPTRPFRIATCGED----FLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDR--KGLIYDGKSGEKIG 226 (612)
Q Consensus 153 ~~~~~~~~~~l~~~~~d----~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--~i~vwd~~~~~~~~ 226 (612)
++|+|||++ +++++.+ +.|++||+.+++.. .+..|...+..++|||||++|+++..++ .|++||+.+++..
T Consensus 155 ~~~spDG~~-la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~- 231 (582)
T 3o4h_A 155 FVSDIRGDL-IAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE- 231 (582)
T ss_dssp EEEEEETTE-EEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-
T ss_pred EEECCCCCE-EEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-
Confidence 999999995 7777766 78999999988765 5678888999999999999999888888 8999999998877
Q ss_pred eeeccCCccccEEEEE--------EecCCCEEEEEeCCCcEEEEEe
Q 007229 227 EFSSEDGHHGSIYAVS--------WSPDGKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 227 ~~~~~~~~~~~v~~i~--------~~~~~~~l~~~~~dg~i~iw~~ 264 (612)
.+ ..+...+..++ |+|||..+++++.++.+++|++
T Consensus 232 ~~---~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 232 DL---ELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp EC---CCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred Ec---cCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 44 25665666666 9999988899999999999986
No 153
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.92 E-value=1.5e-23 Score=209.95 Aligned_cols=272 Identities=14% Similarity=0.142 Sum_probs=196.0
Q ss_pred cccceEEEEECCCCCeEEEEEc-CCcEEEEecCCCCeeeeeeccCCcc-ccEEEEEEecCCCEEEEEeC---CCcEEEEE
Q 007229 189 HSNFVNCIRFSPDGSKLISVSS-DRKGLIYDGKSGEKIGEFSSEDGHH-GSIYAVSWSPDGKKVLTVSA---DKSAKVWE 263 (612)
Q Consensus 189 ~~~~v~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~-~~v~~i~~~~~~~~l~~~~~---dg~i~iw~ 263 (612)
+..+|.+++|+|||++|++++. ||+++||++.+++..... .+. ..+..++|+|| +.+++++. +...++|.
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt----~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~ 94 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLN----REPINSVLDPHYGVG-RVILVRDVSKGAEQHALFK 94 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECC----SSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEE
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeee----cccccccccccCCCC-eEEEEeccCCCCcceEEEE
Confidence 3567999999999999999887 999999999766654433 444 68999999999 77777765 45677877
Q ss_pred eecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEE
Q 007229 264 ILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTI 343 (612)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 343 (612)
++... .+... . +. ........++++.....+
T Consensus 95 ~~~~~-~g~~~-~----------------------------------------------l~-~~~~~~~~~~s~dg~~~~ 125 (582)
T 3o4h_A 95 VNTSR-PGEEQ-R----------------------------------------------LE-AVKPMRILSGVDTGEAVV 125 (582)
T ss_dssp EETTS-TTCCE-E----------------------------------------------CT-TSCSBEEEEEEECSSCEE
T ss_pred EeccC-CCccc-c----------------------------------------------cc-CCCCceeeeeCCCCCeEE
Confidence 73200 11111 0 00 011122345663324444
Q ss_pred EEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCC
Q 007229 344 LSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSS 423 (612)
Q Consensus 344 ~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (612)
++...++.+.+||+.+++...+..
T Consensus 126 ~~s~~~~~~~l~d~~~g~~~~l~~-------------------------------------------------------- 149 (582)
T 3o4h_A 126 FTGATEDRVALYALDGGGLRELAR-------------------------------------------------------- 149 (582)
T ss_dssp EEEECSSCEEEEEEETTEEEEEEE--------------------------------------------------------
T ss_pred EEecCCCCceEEEccCCcEEEeec--------------------------------------------------------
Confidence 444445555588887665433211
Q ss_pred CcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecC----CeEEEEEccCcccccceeeccccCceEE
Q 007229 424 PELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQN----GKLHIYSISGNTLTEEMVLEKHRGAITV 499 (612)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d----g~v~i~d~~~~~~~~~~~~~~~~~~i~~ 499 (612)
.. ..+++|||||++|++++.+ +.|++||+.+++. ..+..|.+.+..
T Consensus 150 -------------------------~~--~~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~---~~l~~~~~~~~~ 199 (582)
T 3o4h_A 150 -------------------------LP--GFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGL---RVFDSGEGSFSS 199 (582)
T ss_dssp -------------------------ES--SCEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCC---EEECCSSCEEEE
T ss_pred -------------------------CC--CceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCc---eEeecCCCcccc
Confidence 00 1568899999999988877 7899999998876 467788888999
Q ss_pred EEEcCCCcEEEEEcCCC--eEEEEecCCcceeeecccccccceeEEE--------ecCCCcEEEEeecCcEEEEEEccCC
Q 007229 500 IQYSPDVSMFASADGNR--EAIVWDRVSKEVKLNNMLFHTARINCLA--------WSPSSTMVATGSIDTCVIIYEIGKP 569 (612)
Q Consensus 500 ~~~s~~~~~l~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~i~~~~--------~s~~~~~l~s~~~d~~i~iwd~~~~ 569 (612)
++|||||++|+++..++ .|++||+.+++.. .+..|...+..++ |+|||.++++++.|+.+++|++
T Consensus 200 ~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--- 274 (582)
T 3o4h_A 200 ASISPGMKVTAGLETAREARLVTVDPRDGSVE--DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--- 274 (582)
T ss_dssp EEECTTSCEEEEEECSSCEEEEEECTTTCCEE--ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET---
T ss_pred ceECCCCCEEEEccCCCeeEEEEEcCCCCcEE--EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE---
Confidence 99999999999888888 8999999998876 5666877888888 9999988999999999999999
Q ss_pred CcceeeeecccccCeeeEEEecCceEEEccCCCe---EEEEEe
Q 007229 570 ASSRITIKNAHLGGVYGVAFMDDFNVVSSGEDAC---IRVWRL 609 (612)
Q Consensus 570 ~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~---i~~w~~ 609 (612)
+ +... .+.+.|.+++|++++.+++++.+.. +.+|++
T Consensus 275 g-~~~~---~~~~~v~~~~~sdg~~l~~~s~~~~p~~l~~~d~ 313 (582)
T 3o4h_A 275 G-ERVE---APQGNHGRVVLWRGKLVTSHTSLSTPPRIVSLPS 313 (582)
T ss_dssp T-EEEC---CCSSEEEEEEEETTEEEEEEEETTEEEEEEEETT
T ss_pred C-Ceec---cCCCceEEEEecCCEEEEEEcCCCCCCeEEEEcC
Confidence 3 4433 2346788999997777888776644 555554
No 154
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.92 E-value=3.9e-21 Score=180.23 Aligned_cols=193 Identities=11% Similarity=0.063 Sum_probs=129.8
Q ss_pred CCCCEEEEee----CcCeEEEeecC--CCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCC-CeeeEEEEEecC--Cc-
Q 007229 69 PNGEWIASAD----VSGSVRIWGTH--NGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGK-GKSFVRAFMWDS--GT- 138 (612)
Q Consensus 69 ~d~~~las~~----~d~~i~iwd~~--~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~-~~~~i~i~~~~~--~~- 138 (612)
++..++..|+ .++.|.+|++. +++. ......+...+..++|+|||++|++++.+. ....+.+|.++. ++
T Consensus 11 ~~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~-~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~ 89 (361)
T 3scy_A 11 DSELTMLVGTYTSGNSKGIYTFRFNEETGES-LPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTL 89 (361)
T ss_dssp GGEEEEEEEECCSSSCCEEEEEEEETTTCCE-EEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEE
T ss_pred CCceEEEEEeccCCCCCCEEEEEEeCCCCCE-EEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcE
Confidence 3344555553 45689999774 4542 222222777888999999999999998851 111577788875 43
Q ss_pred -eeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeeccc--------------ccccceEEEEECCCCC
Q 007229 139 -TVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHR--------------EHSNFVNCIRFSPDGS 203 (612)
Q Consensus 139 -~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~--------------~~~~~v~~~~~s~~~~ 203 (612)
.+.....+......+++ ++++++++...++.|.+|++.....+..+. .+...+.+++|+|+|+
T Consensus 90 ~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~ 167 (361)
T 3scy_A 90 HLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGK 167 (361)
T ss_dssp EEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSS
T ss_pred EEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCC
Confidence 34444556667788888 777656666678999999987544332211 1123468899999999
Q ss_pred eEEEEEc-CCcEEEEecCCCCe------e-ee---eeccCCccccEEEEEEecCCCEEEEEe-CCCcEEEEEe
Q 007229 204 KLISVSS-DRKGLIYDGKSGEK------I-GE---FSSEDGHHGSIYAVSWSPDGKKVLTVS-ADKSAKVWEI 264 (612)
Q Consensus 204 ~l~~~~~-dg~i~vwd~~~~~~------~-~~---~~~~~~~~~~v~~i~~~~~~~~l~~~~-~dg~i~iw~~ 264 (612)
+|++++. ++.+.+|++..... + .. ..........+..++|+|||+++++++ .++.|.+|++
T Consensus 168 ~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~ 240 (361)
T 3scy_A 168 YLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRY 240 (361)
T ss_dssp EEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEE
T ss_pred EEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEe
Confidence 7776664 78999998875442 1 10 000114455678999999999888777 5889999998
No 155
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.92 E-value=2.7e-22 Score=187.10 Aligned_cols=240 Identities=13% Similarity=0.083 Sum_probs=168.7
Q ss_pred CceeEEEEccCCCEEEEec---CCEEEEEeCCCCc--eeeEeccCCCceEEEEECCCCCEEEEee-CcCeEEEeecCC-C
Q 007229 19 GRGILISGNPKTDTILYCN---GRSVLIRYLDKPL--HVEFYGEHGYPVTVARYSPNGEWIASAD-VSGSVRIWGTHN-G 91 (612)
Q Consensus 19 ~~v~~~~~s~d~~~l~~~~---~~~i~i~~~~~~~--~~~~~~~h~~~v~~~~~s~d~~~las~~-~d~~i~iwd~~~-~ 91 (612)
..+..++|+|||+++++.. ++.|.+|++.+++ .+..+..+...+..++|+|||++|++++ .++.|.+|++.. +
T Consensus 40 ~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g 119 (347)
T 3hfq_A 40 QNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADG 119 (347)
T ss_dssp SCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTS
T ss_pred CCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCC
Confidence 4667899999999443433 3799999998776 3444456788899999999999998887 789999999963 3
Q ss_pred ce-eeeeeee---------cCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec-CCcee--eeeccC-CceEEEEEEcC
Q 007229 92 FV-LKNEFKV---------LSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD-SGTTV--GDFDGH-SRRVLSCEFKP 157 (612)
Q Consensus 92 ~~-~~~~~~~---------~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~-~~~~~--~~~~~~-~~~v~~~~~~~ 157 (612)
.. ....+.. +...+.+++|+|||+ ++++..... .+.+|..+ +++.. ..+..+ ...+..++|+|
T Consensus 120 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~--~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~sp 196 (347)
T 3hfq_A 120 ALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSD--KVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSP 196 (347)
T ss_dssp CEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTT--EEEEEEECTTSCEEEEEEEECCTTCCEEEEEECT
T ss_pred CeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCC--EEEEEEECCCCcEEEeeeEEcCCCCCCceEEECC
Confidence 21 1111211 112488999999999 555544333 46777777 44432 222222 33678899999
Q ss_pred CCCEEEEEeecCCeEEEEeCCC--Ceee--ecccccc------cceEEEEECCCCCeEEE-EEcCCcEEEEecCCC---C
Q 007229 158 TRPFRIATCGEDFLVNFYEGPP--FKFK--LSHREHS------NFVNCIRFSPDGSKLIS-VSSDRKGLIYDGKSG---E 223 (612)
Q Consensus 158 ~~~~~l~~~~~d~~i~~wd~~~--~~~~--~~~~~~~------~~v~~~~~s~~~~~l~~-~~~dg~i~vwd~~~~---~ 223 (612)
+|+++++++..++.|.+|++.. ++.. ..+.... ..+..++|+|||++|++ ...++.|.+|++... +
T Consensus 197 dg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~ 276 (347)
T 3hfq_A 197 DGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLT 276 (347)
T ss_dssp TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEE
T ss_pred CCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEE
Confidence 9997677778899999999764 4432 2222222 45889999999998854 455899999998733 2
Q ss_pred eeeeeeccCCccccEEEEEEecCCCEEEEEeCC-CcEEEEEe
Q 007229 224 KIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSAD-KSAKVWEI 264 (612)
Q Consensus 224 ~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d-g~i~iw~~ 264 (612)
.+..+ ..+...+..++|+|||++|++++.+ +.+.+|++
T Consensus 277 ~~~~~---~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~ 315 (347)
T 3hfq_A 277 LIQQI---STEGDFPRDFDLDPTEAFVVVVNQNTDNATLYAR 315 (347)
T ss_dssp EEEEE---ECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred EeEEE---ecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEE
Confidence 33333 2445567899999999998888765 89999977
No 156
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.92 E-value=3.7e-23 Score=212.94 Aligned_cols=367 Identities=11% Similarity=-0.023 Sum_probs=228.3
Q ss_pred EEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeeccccccc---ceEEEEECCCCCeEEEEEc---------CCcEEEEec
Q 007229 152 SCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSN---FVNCIRFSPDGSKLISVSS---------DRKGLIYDG 219 (612)
Q Consensus 152 ~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~---~v~~~~~s~~~~~l~~~~~---------dg~i~vwd~ 219 (612)
.++|+|++. ++++ +.|+.|++||+.+++....+.+|.. .+.+++|||||++|++++. ++.|++||+
T Consensus 20 ~~~~s~dg~-~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~ 97 (719)
T 1z68_A 20 FPNWISGQE-YLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDL 97 (719)
T ss_dssp CCEESSSSE-EEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred ccEECCCCe-EEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEEC
Confidence 679999995 3554 4699999999999988776665544 4899999999999998876 689999999
Q ss_pred CCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEE
Q 007229 220 KSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHL 299 (612)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (612)
.+++.+... .....+..++|+|||+.|+.+. ++.|++|++ .+++..+......
T Consensus 98 ~~g~~~~~~----~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~----~~g~~~~l~~~~~------------------ 150 (719)
T 1z68_A 98 SNGEFVRGN----ELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQR----PGDPPFQITFNGR------------------ 150 (719)
T ss_dssp TTTEECCSS----CCCSSBCCEEECSSTTCEEEEE-TTEEEEESS----TTSCCEECCCCCB------------------
T ss_pred CCCccccce----ecCcccccceECCCCCEEEEEE-CCeEEEEeC----CCCCcEEEecCCC------------------
Confidence 988763212 1124578899999999999885 789999998 6655433211110
Q ss_pred EEEEcCCEEEEEEcCCCCCCceeecCcccc---------eeEEEEEecCCcEEEEEecC-CcEEEEEcCCceeeeeceec
Q 007229 300 ITVSLGGIISIFSASNLDKAPLSFSGHVKN---------VSTLTALKISQQTILSSSYD-GAIIKWIRGVGYSSKLEKKY 369 (612)
Q Consensus 300 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~---------v~~~~~~~~~~~~l~~~~~d-g~i~~wd~~~~~~~~~~~~~ 369 (612)
....+.++... ...+.|++. ++.|++++.| +.+.+|.+..... .+
T Consensus 151 -------------------~~~v~~g~~~~v~~ee~~~~~~~~~wSPD-G~~la~~~~d~~~~~~~~~~~~~~-----~~ 205 (719)
T 1z68_A 151 -------------------ENKIFNGIPDWVYEEEMLATKYALWWSPN-GKFLAYAEFNDTDIPVIAYSYYGD-----EQ 205 (719)
T ss_dssp -------------------TTTEEESSCCHHHHHHTTCSSCCEEECTT-SSEEEEEEEECTTSCEEEEEECCS-----SS
T ss_pred -------------------cCCeEcccccceeeeecccCcccEEECCC-CCEEEEEEECCCCCceEEeeccCC-----CC
Confidence 00111223222 246778732 7788877655 4455553321110 01
Q ss_pred ccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecc
Q 007229 370 DARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDL 449 (612)
Q Consensus 370 ~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (612)
...+..+.+... -.......+++||+.++.... ...... ......+
T Consensus 206 ~~~~~~~~yp~~--g~~~~~~~l~~~d~~~~~~~~--~~~~~~------------------------------~~~~~~~ 251 (719)
T 1z68_A 206 YPRTINIPYPKA--GAKNPVVRIFIIDTTYPAYVG--PQEVPV------------------------------PAMIASS 251 (719)
T ss_dssp SCEEEEEECCBT--TSCCCEEEEEEEESSCHHHHC--CEECCC------------------------------CHHHHTS
T ss_pred CccceeecCCCC--CCCCCeeEEEEEECCCCCccc--eeEccC------------------------------CccCCCC
Confidence 122222332100 001123378888876543200 000000 0000114
Q ss_pred cceEEEEEEccCCCeEEEEecC----CeEEEEE----ccCcccccceee----ccccCceE-----EEEEcCCCcEEEE-
Q 007229 450 GFTVTACAIAPDGSEAIVGGQN----GKLHIYS----ISGNTLTEEMVL----EKHRGAIT-----VIQYSPDVSMFAS- 511 (612)
Q Consensus 450 ~~~i~~~~~s~~~~~l~~~~~d----g~v~i~d----~~~~~~~~~~~~----~~~~~~i~-----~~~~s~~~~~l~~- 511 (612)
...+.+++||||++++++.... ..|.+|| +.+++.. ..+ ..|...+. .++|+|||+.|+.
T Consensus 252 ~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~ 329 (719)
T 1z68_A 252 DYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCP--KTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKI 329 (719)
T ss_dssp CEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECC--GGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEE
T ss_pred cceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceE--EEEecccccCCceEccccCCccEECCCCCeEEEE
Confidence 4568899999998877774433 2488899 7777653 333 45666676 8899999996654
Q ss_pred -EcCCC--eEEEEecCCcceeeecccccccceeEEEecCCCcEEEEeecC-----cEEEEEEccCCCcc-eeeeec----
Q 007229 512 -ADGNR--EAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSID-----TCVIIYEIGKPASS-RITIKN---- 578 (612)
Q Consensus 512 -~~~d~--~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d-----~~i~iwd~~~~~~~-~~~~~~---- 578 (612)
...+| .|.+||+.+++. ..+..+...+..+.++ +++.|+..+.+ +..++|.+...+.. ....+.
T Consensus 330 ~~~~~g~~~l~~~~~~~~~~--~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~ 406 (719)
T 1z68_A 330 FSDKDGYKHIHYIKDTVENA--IQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLR 406 (719)
T ss_dssp EECTTSCEEEEEESSCSTTC--EECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTT
T ss_pred EEccCCceEEEEEECCCCce--EecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccC
Confidence 44444 677788877764 3344456667887777 78777666554 78999988752201 123332
Q ss_pred ccccCeeeEEEe-cCceEEE-ccCC--CeEEEEEecc
Q 007229 579 AHLGGVYGVAFM-DDFNVVS-SGED--ACIRVWRLAT 611 (612)
Q Consensus 579 ~h~~~v~~~~~~-~~~~l~s-~~~d--~~i~~w~~~~ 611 (612)
+|...+..+.|+ ++++++. ++.+ ..+.+|++++
T Consensus 407 ~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~ 443 (719)
T 1z68_A 407 KERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRT 443 (719)
T ss_dssp TTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSS
T ss_pred CCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCC
Confidence 366778899999 7777653 4333 4678888754
No 157
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.91 E-value=5.3e-22 Score=203.85 Aligned_cols=371 Identities=12% Similarity=0.046 Sum_probs=222.4
Q ss_pred CceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCC-----eEEEEECCCCCEEEEEeCCCCeeeEEEEEe
Q 007229 60 YPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGR-----IDDLQWSPDGLRIVACGDGKGKSFVRAFMW 134 (612)
Q Consensus 60 ~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~-----i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~ 134 (612)
....+++|+|||++++++ |++|++||+.+++. ...+..|... ...++|||||++|++.+.+.. +|
T Consensus 17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~-----~~-- 86 (740)
T 4a5s_A 17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNS-SVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVK-----QW-- 86 (740)
T ss_dssp CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCE-EEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEE-----CS--
T ss_pred ccccccEECCCCcEEEEc--CCcEEEEECCCCce-EEEEechhhhhhcccccceEECCCCCEEEEEECCee-----eE--
Confidence 346689999999999997 89999999999984 3345555432 233667777777776654320 00
Q ss_pred cCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcE
Q 007229 135 DSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKG 214 (612)
Q Consensus 135 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 214 (612)
.| +..+.+.+||+.+++.. .+..|...+...+|||||+.||.+. ++.|
T Consensus 87 ----------r~--------------------~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i 134 (740)
T 4a5s_A 87 ----------RH--------------------SYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDI 134 (740)
T ss_dssp ----------SS--------------------CEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEE
T ss_pred ----------EE--------------------ccceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeE
Confidence 00 11255889999998865 4667788899999999999999874 7899
Q ss_pred EEEecCCCCeeeeeeccCCccccE-----------------EEEEEecCCCEEEEEeCCC-cEEEEEeecCCCCCeeEee
Q 007229 215 LIYDGKSGEKIGEFSSEDGHHGSI-----------------YAVSWSPDGKKVLTVSADK-SAKVWEILEDGSGGRVIKT 276 (612)
Q Consensus 215 ~vwd~~~~~~~~~~~~~~~~~~~v-----------------~~i~~~~~~~~l~~~~~dg-~i~iw~~~~~~~~~~~~~~ 276 (612)
++|++.+++...... .++...+ ..+.|||||++|+..+.|. .+.+|++.......
T Consensus 135 ~~~~~~~~~~~~lt~--~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~----- 207 (740)
T 4a5s_A 135 YVKIEPNLPSYRITW--TGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDES----- 207 (740)
T ss_dssp EEESSTTSCCEECCS--CCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTT-----
T ss_pred EEEECCCCceEEEcC--CCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCC-----
Confidence 999998887654321 1222222 3589999999999887654 48888872111100
Q ss_pred eeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEE
Q 007229 277 FASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWI 356 (612)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd 356 (612)
.+...+..+.+... +.. .....|++||
T Consensus 208 ------------------------------------------------~~~~~~~~~~yp~~-G~~----~~~~~l~v~d 234 (740)
T 4a5s_A 208 ------------------------------------------------LQYPKTVRVPYPKA-GAV----NPTVKFFVVN 234 (740)
T ss_dssp ------------------------------------------------CSSCEEEEEECCBT-TSC----CCEEEEEEEE
T ss_pred ------------------------------------------------CCCCcceeecCCCC-cCc----CCeeEEEEEE
Confidence 11122222333211 110 1112466677
Q ss_pred cCC---ce---eeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEE
Q 007229 357 RGV---GY---SSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVS 430 (612)
Q Consensus 357 ~~~---~~---~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (612)
+.+ +. ...+...
T Consensus 235 ~~~~~~~~~~~~~~l~~~-------------------------------------------------------------- 252 (740)
T 4a5s_A 235 TDSLSSVTNATSIQITAP-------------------------------------------------------------- 252 (740)
T ss_dssp TTSCCSSSCCCEEEECCC--------------------------------------------------------------
T ss_pred CCCCCCCCcceEEEecCC--------------------------------------------------------------
Confidence 665 42 1111000
Q ss_pred eeccEEEeecccceeeecccceEEEEEEccCCCeEEEEec----CCeEEEEEccCcc----cccceee--ccccCceE--
Q 007229 431 TESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQ----NGKLHIYSISGNT----LTEEMVL--EKHRGAIT-- 498 (612)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~----dg~v~i~d~~~~~----~~~~~~~--~~~~~~i~-- 498 (612)
.....+...+..++|+|||+.++.... +..|++||+.+++ ......+ ..|...+.
T Consensus 253 -------------~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~ 319 (740)
T 4a5s_A 253 -------------ASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRF 319 (740)
T ss_dssp -------------HHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSS
T ss_pred -------------ccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccC
Confidence 000012345788999999997766543 2379999999887 2222323 44555554
Q ss_pred ---EEEEcCCCcEEE-EEcC-C--CeEEEEecCCcceeeecccccccceeEEEecCCCcEEE-Eeec----CcEEEEEEc
Q 007229 499 ---VIQYSPDVSMFA-SADG-N--REAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVA-TGSI----DTCVIIYEI 566 (612)
Q Consensus 499 ---~~~~s~~~~~l~-~~~~-d--~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-s~~~----d~~i~iwd~ 566 (612)
..+|+|||+.|+ ..+. + ..|++||+.+++.. . +......+..+.. +|++.|+ ++.. .+...||.+
T Consensus 320 ~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~-~-lT~g~~~v~~~~~-~d~~~i~f~~~~~~~~~~~~~ly~v 396 (740)
T 4a5s_A 320 RPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCT-F-ITKGTWEVIGIEA-LTSDYLYYISNEYKGMPGGRNLYKI 396 (740)
T ss_dssp SCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCE-E-SCCSSSCEEEEEE-ECSSEEEEEESCGGGCTTCBEEEEE
T ss_pred cCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceE-e-cccCCEEEEEEEE-EeCCEEEEEEecCCCCCceeEEEEE
Confidence 789999999877 5543 3 56888999887664 3 3333445555442 3466554 4443 234555555
Q ss_pred cCCCcceeeeec----ccccCeeeEEEe-cCceEEEcc-C--CCeEEEEEec
Q 007229 567 GKPASSRITIKN----AHLGGVYGVAFM-DDFNVVSSG-E--DACIRVWRLA 610 (612)
Q Consensus 567 ~~~~~~~~~~~~----~h~~~v~~~~~~-~~~~l~s~~-~--d~~i~~w~~~ 610 (612)
...+......+. +....+....|+ ++++++... . -..+.+++.+
T Consensus 397 ~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~ 448 (740)
T 4a5s_A 397 QLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSV 448 (740)
T ss_dssp ETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETT
T ss_pred ECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECC
Confidence 432212222333 234578889999 777755332 2 2355666554
No 158
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.91 E-value=9.5e-22 Score=187.11 Aligned_cols=242 Identities=14% Similarity=0.089 Sum_probs=175.5
Q ss_pred CCceeEEEEccCCCEEEEecCCEEEEEeCCCC----------ceee-----EeccCCCceEEEEECCCCCEEE----Eee
Q 007229 18 RGRGILISGNPKTDTILYCNGRSVLIRYLDKP----------LHVE-----FYGEHGYPVTVARYSPNGEWIA----SAD 78 (612)
Q Consensus 18 ~~~v~~~~~s~d~~~l~~~~~~~i~i~~~~~~----------~~~~-----~~~~h~~~v~~~~~s~d~~~la----s~~ 78 (612)
...++.+++++++.++++++...+++|+.... .... ....|...|++++|+|+|++|| +++
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dgv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs 115 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASGLQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSE 115 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTEEEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETT
T ss_pred CCCccEEEEecCCCEEEEECCCEEEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccC
Confidence 34688999999999999998555888875311 0010 1123667899999999999999 889
Q ss_pred CcCeEEEeecCCC--------ce--eeeeeeecCCCeEEEEECCC-CCEEEEEeCCCCeeeEEEEEecCCceeeeeccCC
Q 007229 79 VSGSVRIWGTHNG--------FV--LKNEFKVLSGRIDDLQWSPD-GLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHS 147 (612)
Q Consensus 79 ~d~~i~iwd~~~~--------~~--~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~ 147 (612)
.|+.|+|||+.+. +. ....+.+|...|.+++|+|+ +.+|++++.++ .+++|+..++..+....+|.
T Consensus 116 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg---~v~iwD~~~~~~~~~~~~~~ 192 (434)
T 2oit_A 116 YGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADG---SIAVLQVTETVKVCATLPST 192 (434)
T ss_dssp TEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTS---CEEEEEESSSEEEEEEECGG
T ss_pred CCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCC---eEEEEEcCCCcceeeccCCC
Confidence 9999999998765 11 13455679999999999998 78999999988 57888888887777778899
Q ss_pred ceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccc-------cccceEEEEECCCCCeEEEEE-cCC------c
Q 007229 148 RRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHRE-------HSNFVNCIRFSPDGSKLISVS-SDR------K 213 (612)
Q Consensus 148 ~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~-------~~~~v~~~~~s~~~~~l~~~~-~dg------~ 213 (612)
..|.+++|+|+++ .|++|+.||.|++||.+ ++....+.. |...|.+++|++++.++++.+ .+| .
T Consensus 193 ~~v~~v~wspdg~-~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~ 270 (434)
T 2oit_A 193 VAVTSVCWSPKGK-QLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPD 270 (434)
T ss_dssp GCEEEEEECTTSS-CEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCE
T ss_pred CceeEEEEcCCCC-EEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCc
Confidence 9999999999999 59999999999999998 444444332 334899999999888775533 343 3
Q ss_pred EEEEecCCCCe-----eeeeecc----CCccccEEEEEEecCCCEEEEEeC-CCcEEEEEe
Q 007229 214 GLIYDGKSGEK-----IGEFSSE----DGHHGSIYAVSWSPDGKKVLTVSA-DKSAKVWEI 264 (612)
Q Consensus 214 i~vwd~~~~~~-----~~~~~~~----~~~~~~v~~i~~~~~~~~l~~~~~-dg~i~iw~~ 264 (612)
+++|++...+. ...+... .....+...+.+.++.+++++++. .+.|.++..
T Consensus 271 v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~ 331 (434)
T 2oit_A 271 VVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILAR 331 (434)
T ss_dssp EEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEE
T ss_pred eEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEe
Confidence 88999986531 1111100 022223334455577777766654 455777765
No 159
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.90 E-value=3.5e-22 Score=186.92 Aligned_cols=240 Identities=13% Similarity=0.058 Sum_probs=181.8
Q ss_pred EEEEccCCCEEEEec-CCEEEEEeCCCCceeeEeccCC-CceEEEEECCCCCEEE-EeeCcCeEEEeecCCCceeeeeee
Q 007229 23 LISGNPKTDTILYCN-GRSVLIRYLDKPLHVEFYGEHG-YPVTVARYSPNGEWIA-SADVSGSVRIWGTHNGFVLKNEFK 99 (612)
Q Consensus 23 ~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~~~h~-~~v~~~~~s~d~~~la-s~~~d~~i~iwd~~~~~~~~~~~~ 99 (612)
.+++++++++++++. ++.|.+||+.+++.+..+..+. ..+..++|+|||++++ +...++.|.+||+.+++.+. .+.
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~-~~~ 82 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTF-HAN 82 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE-EEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEE-EEE
Confidence 457888998888876 7999999999999888776443 2678999999998665 55578999999999887432 333
Q ss_pred e-c-----CCCeEEEEECCCCCEEEEEeCC-----------CCeeeEEEEEecCCce---eeeeccCCceEEEEEEcCCC
Q 007229 100 V-L-----SGRIDDLQWSPDGLRIVACGDG-----------KGKSFVRAFMWDSGTT---VGDFDGHSRRVLSCEFKPTR 159 (612)
Q Consensus 100 ~-~-----~~~i~~~~~s~~~~~l~~~~~~-----------~~~~~i~i~~~~~~~~---~~~~~~~~~~v~~~~~~~~~ 159 (612)
. + ...+..++|+|||++|++++.+ .. .+.+|+.++++. +..+. +...+.+++|+|++
T Consensus 83 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~--~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg 159 (349)
T 1jmx_B 83 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPP--RLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDG 159 (349)
T ss_dssp SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCC--EEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTS
T ss_pred cccccccccccccceEECCCCCEEEEEcccccccccccccCCC--eEEEEECCCccccceeeecc-CCCcccceeECCCC
Confidence 2 2 2347899999999999998854 12 466666666433 33333 33468899999999
Q ss_pred CEEEEEeecCCeEEEEeCCCCeeeecccccc-------------------------------------------------
Q 007229 160 PFRIATCGEDFLVNFYEGPPFKFKLSHREHS------------------------------------------------- 190 (612)
Q Consensus 160 ~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~------------------------------------------------- 190 (612)
+ +++ ++ +.|.+||..+++....+..+.
T Consensus 160 ~-l~~-~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 235 (349)
T 1jmx_B 160 S-LYV-AG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGY 235 (349)
T ss_dssp C-EEE-ES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEE
T ss_pred c-EEE-cc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeE
Confidence 8 555 33 349999999887765543221
Q ss_pred -------------------cceEEEEECC-CCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEE
Q 007229 191 -------------------NFVNCIRFSP-DGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKV 250 (612)
Q Consensus 191 -------------------~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l 250 (612)
..+..++|+| ++++++++ ++.|.+||+.+++.+..+. ....+.+++|+|++++|
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~----~~~~~~~~~~s~dg~~l 309 (349)
T 1jmx_B 236 LSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAAN----LDHTYYCVAFDKKGDKL 309 (349)
T ss_dssp EEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEE----CSSCCCEEEECSSSSCE
T ss_pred EEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEc----CCCCccceEECCCCCEE
Confidence 1345678889 99999887 8899999999998887773 33456789999999999
Q ss_pred EEEeCCCcEEEEEeecCCCCCeeEeeeecc
Q 007229 251 LTVSADKSAKVWEILEDGSGGRVIKTFASS 280 (612)
Q Consensus 251 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~ 280 (612)
++++.++.|.+||+ .+++.+..+...
T Consensus 310 ~~~~~~~~v~v~d~----~~~~~~~~~~~~ 335 (349)
T 1jmx_B 310 YLGGTFNDLAVFNP----DTLEKVKNIKLP 335 (349)
T ss_dssp EEESBSSEEEEEET----TTTEEEEEEECS
T ss_pred EEecCCCeEEEEec----cccceeeeeecC
Confidence 98888999999999 888888877654
No 160
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.90 E-value=5.5e-21 Score=181.84 Aligned_cols=217 Identities=16% Similarity=0.099 Sum_probs=162.6
Q ss_pred CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCc----------eee----eeeeecCC
Q 007229 38 GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGF----------VLK----NEFKVLSG 103 (612)
Q Consensus 38 ~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~----------~~~----~~~~~~~~ 103 (612)
.+.+++|+.... .+...++.+++++++.++++++.++ ++||+..... .+. .....+..
T Consensus 22 ~~~vri~~~~~~-------~~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (434)
T 2oit_A 22 LKKVRIFDSPEE-------LPKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKF 93 (434)
T ss_dssp CCEEECSCCCSS-------CCCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSS
T ss_pred eeeEEecCCccc-------cCCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCC
Confidence 356777764311 2345689999999999999999887 8998754210 000 01123566
Q ss_pred CeEEEEECCCCCEEEE----EeCCCCeeeEEEEEecCC--------c---eeeeeccCCceEEEEEEcCCCCEEEEEeec
Q 007229 104 RIDDLQWSPDGLRIVA----CGDGKGKSFVRAFMWDSG--------T---TVGDFDGHSRRVLSCEFKPTRPFRIATCGE 168 (612)
Q Consensus 104 ~i~~~~~s~~~~~l~~----~~~~~~~~~i~i~~~~~~--------~---~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 168 (612)
.|.+++|+|+|++|++ ++.++ .+++|+.+++ + .+..+.+|...|.+++|+|++..++++++.
T Consensus 94 ~v~~l~~spdg~~lav~~~sgs~d~---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~ 170 (434)
T 2oit_A 94 PIHHLALSCDNLTLSACMMSSEYGS---IIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLA 170 (434)
T ss_dssp CEEEEEECTTSCEEEEEEEETTTEE---EEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEET
T ss_pred cccEEEEcCCCCEEEEEEeccCCCc---eEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEEC
Confidence 7999999999999994 44444 5777776644 1 245677899999999999984337999999
Q ss_pred CCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccC----CccccEEEEEEe
Q 007229 169 DFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSED----GHHGSIYAVSWS 244 (612)
Q Consensus 169 d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~----~~~~~v~~i~~~ 244 (612)
||+|++||++++.......+|...|.+++|+|+|++|++|+.||.|++||++ ++....+.... .|...+.+++|+
T Consensus 171 Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~ 249 (434)
T 2oit_A 171 DGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWI 249 (434)
T ss_dssp TSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEE
T ss_pred CCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEe
Confidence 9999999999987776677899999999999999999999999999999988 55555442211 234489999999
Q ss_pred cCCCEEEEEe-CCC------cEEEEEeec
Q 007229 245 PDGKKVLTVS-ADK------SAKVWEILE 266 (612)
Q Consensus 245 ~~~~~l~~~~-~dg------~i~iw~~~~ 266 (612)
+++.++++.+ .+| .+++|++..
T Consensus 250 ~~~~~l~~~~~~dg~~~~~~~v~i~~l~~ 278 (434)
T 2oit_A 250 GTYVFAIVYAAADGTLETSPDVVMALLPK 278 (434)
T ss_dssp ETTEEEEEEEETTCCSSSCCEEEEEECCC
T ss_pred cCceEEEEEccCCCccCCCCceEEEEecc
Confidence 9888775543 343 389999943
No 161
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.90 E-value=3.5e-20 Score=173.72 Aligned_cols=298 Identities=13% Similarity=0.100 Sum_probs=194.4
Q ss_pred ccCCCEEEEec-----CCEEEEEeC--CCCceeeEeccCCCceEEEEECCCCCEEEEeeCc----CeEEEeecCC--Cce
Q 007229 27 NPKTDTILYCN-----GRSVLIRYL--DKPLHVEFYGEHGYPVTVARYSPNGEWIASADVS----GSVRIWGTHN--GFV 93 (612)
Q Consensus 27 s~d~~~l~~~~-----~~~i~i~~~--~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d----~~i~iwd~~~--~~~ 93 (612)
.++..++++++ ++.|.+|.+ ++++.......+...+..++|+|||++|++++.+ +.|.+|++.. ++.
T Consensus 10 ~~~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~ 89 (361)
T 3scy_A 10 TDSELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTL 89 (361)
T ss_dssp GGGEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEE
T ss_pred CCCceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcE
Confidence 44555666653 468888866 5565543322277888899999999999998875 7999999876 331
Q ss_pred -eeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeee------c--------cCCceEEEEEEcCC
Q 007229 94 -LKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDF------D--------GHSRRVLSCEFKPT 158 (612)
Q Consensus 94 -~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~------~--------~~~~~v~~~~~~~~ 158 (612)
.......+......+++ ++++|+++..... .+.+|..+....+..+ . .+...+.+++|+|+
T Consensus 90 ~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~--~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spd 165 (361)
T 3scy_A 90 HLLNTQKTMGADPCYLTT--NGKNIVTANYSGG--SITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPD 165 (361)
T ss_dssp EEEEEEECSSSCEEEEEE--CSSEEEEEETTTT--EEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTT
T ss_pred EEeeEeccCCCCcEEEEE--CCCEEEEEECCCC--EEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCC
Confidence 12223334567788888 8998888875543 4667777643332221 1 12334688999999
Q ss_pred CCEEEEEeecCCeEEEEeCCCCee------e-------ecccccccceEEEEECCCCCeEEEEE-cCCcEEEEecCCCCe
Q 007229 159 RPFRIATCGEDFLVNFYEGPPFKF------K-------LSHREHSNFVNCIRFSPDGSKLISVS-SDRKGLIYDGKSGEK 224 (612)
Q Consensus 159 ~~~~l~~~~~d~~i~~wd~~~~~~------~-------~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~ 224 (612)
++++++++..++.|.+|++..... + .....+...+..++|+|||+++++++ .++.|.+|++.+++.
T Consensus 166 g~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~ 245 (361)
T 3scy_A 166 GKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGML 245 (361)
T ss_dssp SSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEE
T ss_pred CCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCce
Confidence 997667777789999998765431 1 11223445678999999999888877 589999999987754
Q ss_pred --eeeeeccCCccccEEEEEEecCCCEEEEEeCC--CcEEEEEeecCCCCCe--eEeeeeccCccccceeeeeeeccCCE
Q 007229 225 --IGEFSSEDGHHGSIYAVSWSPDGKKVLTVSAD--KSAKVWEILEDGSGGR--VIKTFASSTSNAVEDMLVGCLWQNDH 298 (612)
Q Consensus 225 --~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d--g~i~iw~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (612)
+..+.....+......++|+|||++|+++..+ +.|.+|+++.. +++ .+..+
T Consensus 246 ~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~--~g~~~~~~~~--------------------- 302 (361)
T 3scy_A 246 DEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDET--NGTLTKVGYQ--------------------- 302 (361)
T ss_dssp EEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTT--TCCEEEEEEE---------------------
T ss_pred EEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCC--CCcEEEeeEe---------------------
Confidence 22232222344567899999999998776654 88999998311 122 11111
Q ss_pred EEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEe-cCCcEEEEEc--CCceeeeece-ecccceE
Q 007229 299 LITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSS-YDGAIIKWIR--GVGYSSKLEK-KYDARIK 374 (612)
Q Consensus 299 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~~wd~--~~~~~~~~~~-~~~~~i~ 374 (612)
.. ...+..++|++. ++++++++ .++.|.+|++ .+++...... .+...+.
T Consensus 303 -------------------------~~-g~~~~~~~~spd-g~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~ 355 (361)
T 3scy_A 303 -------------------------LT-GIHPRNFIITPN-GKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPV 355 (361)
T ss_dssp -------------------------EC-SSCCCEEEECTT-SCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEE
T ss_pred -------------------------cC-CCCCceEEECCC-CCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCe
Confidence 11 234556777732 66666665 6788999654 4566555432 2445667
Q ss_pred EEEe
Q 007229 375 CLAA 378 (612)
Q Consensus 375 ~~~~ 378 (612)
|+.|
T Consensus 356 ~v~~ 359 (361)
T 3scy_A 356 CLKF 359 (361)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7665
No 162
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.90 E-value=1.9e-21 Score=184.63 Aligned_cols=212 Identities=9% Similarity=-0.022 Sum_probs=154.3
Q ss_pred EEeCCCCceeeEeccCCCceEE-----EEECCCCCEEEEeeC-cC--eEEEeecCCCceeeeeeeecCCCeEEEEECCCC
Q 007229 43 IRYLDKPLHVEFYGEHGYPVTV-----ARYSPNGEWIASADV-SG--SVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDG 114 (612)
Q Consensus 43 i~~~~~~~~~~~~~~h~~~v~~-----~~~s~d~~~las~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~ 114 (612)
.+|..++.....+..|...... .+|||||++||.++. ++ .|.+||+.+++ .......+...+..++|+|||
T Consensus 14 ~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~-~~~lt~~~~~~~~~~~~spdg 92 (388)
T 3pe7_A 14 YQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQV-ATQLTEGRGDNTFGGFLSPDD 92 (388)
T ss_dssp EECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCE-EEECCCSSCBCSSSCEECTTS
T ss_pred EecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCc-eEEeeeCCCCCccceEEcCCC
Confidence 4577888888889888877666 899999999999887 66 48888998887 444445555556678899999
Q ss_pred CEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEE--EcCCCCEEEEE----------------------eecCC
Q 007229 115 LRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCE--FKPTRPFRIAT----------------------CGEDF 170 (612)
Q Consensus 115 ~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~l~~----------------------~~~d~ 170 (612)
++|++++.+. .+.+++.++++....+..+...+.... ++|++.. ++. ...+.
T Consensus 93 ~~l~~~~~~~---~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (388)
T 3pe7_A 93 DALFYVKDGR---NLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTK-LVGIEIRREDWVPLTDWKKFHEFYFTKPCC 168 (388)
T ss_dssp SEEEEEETTT---EEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSE-EEEEEEEGGGCCCCCSHHHHHHHGGGCCCE
T ss_pred CEEEEEeCCC---eEEEEECCCCcceeeeechhhcccccceeECCCCCe-eccccccCcccccccccchhhhhhccCCcc
Confidence 9999999775 355666667777766666666664444 4899985 542 22447
Q ss_pred eEEEEeCCCCeeeecccccccceEEEEECC-CCCeEEEEEcC------CcEEEEecCCCCeeeeeeccCCcc--ccEEEE
Q 007229 171 LVNFYEGPPFKFKLSHREHSNFVNCIRFSP-DGSKLISVSSD------RKGLIYDGKSGEKIGEFSSEDGHH--GSIYAV 241 (612)
Q Consensus 171 ~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d------g~i~vwd~~~~~~~~~~~~~~~~~--~~v~~i 241 (612)
.|.+||+.+++.. .+..+...+..++|+| ||+.|+.+..+ ..|.++|...++..... .+. ..+..+
T Consensus 169 ~l~~~d~~~g~~~-~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~----~~~~~~~~~~~ 243 (388)
T 3pe7_A 169 RLMRVDLKTGEST-VILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVK----THAEGESCTHE 243 (388)
T ss_dssp EEEEEETTTCCEE-EEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESC----CCCTTEEEEEE
T ss_pred eEEEEECCCCceE-EeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEee----eCCCCcccccc
Confidence 8999999998654 3445667799999999 99999887763 37888887665544333 222 357889
Q ss_pred EEecCCCEEEEEeCC-C----cEEEEEe
Q 007229 242 SWSPDGKKVLTVSAD-K----SAKVWEI 264 (612)
Q Consensus 242 ~~~~~~~~l~~~~~d-g----~i~iw~~ 264 (612)
+|+|||+.|+..+.+ + .|.+||+
T Consensus 244 ~~spdg~~l~~~~~~~~~~~~~l~~~d~ 271 (388)
T 3pe7_A 244 FWVPDGSALVYVSYLKGSPDRFIYSADP 271 (388)
T ss_dssp EECTTSSCEEEEEEETTCCCEEEEEECT
T ss_pred eECCCCCEEEEEecCCCCCcceEEEEec
Confidence 999999988665432 2 2777776
No 163
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.90 E-value=1.7e-21 Score=182.23 Aligned_cols=161 Identities=8% Similarity=0.011 Sum_probs=120.9
Q ss_pred EEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCC-ceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeec
Q 007229 107 DLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHS-RRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLS 185 (612)
Q Consensus 107 ~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~ 185 (612)
.++++++++++++++.++ .+.+|+.++++.+..+..+. ..+..++|+|+++++++++..++.|.+||+.+++....
T Consensus 4 g~~~~~~~~~~v~~~~~~---~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~ 80 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPN---NLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFH 80 (349)
T ss_dssp CCCCCTTCEEEEEEETTT---EEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred cccccCCCEEEEEeCCCC---eEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEE
Confidence 456888888889888877 46677766888888776543 25788999999997677777899999999999988766
Q ss_pred cccc------ccceEEEEECCCCCeEEEEEcC------------CcEEEEecCCCCeeeeeeccCCccccEEEEEEecCC
Q 007229 186 HREH------SNFVNCIRFSPDGSKLISVSSD------------RKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDG 247 (612)
Q Consensus 186 ~~~~------~~~v~~~~~s~~~~~l~~~~~d------------g~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~ 247 (612)
+..+ ...+..++|+|||++|++++.+ +.|.+||+.+++....+... .+...+.+++|+|+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~s~dg 159 (349)
T 1jmx_B 81 ANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF-PMPRQVYLMRAADDG 159 (349)
T ss_dssp EESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE-ECCSSCCCEEECTTS
T ss_pred EEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeec-cCCCcccceeECCCC
Confidence 5532 2337889999999999998865 89999999886543322211 233468889999999
Q ss_pred CEEEEEeCCCcEEEEEeecCCCCCeeEeeee
Q 007229 248 KKVLTVSADKSAKVWEILEDGSGGRVIKTFA 278 (612)
Q Consensus 248 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 278 (612)
+ +++++ +.|.+||+ .+++....+.
T Consensus 160 ~-l~~~~--~~i~~~d~----~~~~~~~~~~ 183 (349)
T 1jmx_B 160 S-LYVAG--PDIYKMDV----KTGKYTVALP 183 (349)
T ss_dssp C-EEEES--SSEEEECT----TTCCEEEEEC
T ss_pred c-EEEcc--CcEEEEeC----CCCceecccc
Confidence 9 66554 34999998 6776665443
No 164
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.90 E-value=1.6e-21 Score=185.15 Aligned_cols=164 Identities=12% Similarity=0.093 Sum_probs=120.4
Q ss_pred EeecCCCceeeeeeeecCCCeEE-----EEECCCCCEEEEEeCCCCeeeEEEEEec--CCceeeeeccCCceEEEEEEcC
Q 007229 85 IWGTHNGFVLKNEFKVLSGRIDD-----LQWSPDGLRIVACGDGKGKSFVRAFMWD--SGTTVGDFDGHSRRVLSCEFKP 157 (612)
Q Consensus 85 iwd~~~~~~~~~~~~~~~~~i~~-----~~~s~~~~~l~~~~~~~~~~~i~i~~~~--~~~~~~~~~~~~~~v~~~~~~~ 157 (612)
.+|..++.. ...+..|...... .+|||||++|++++...+. ..+|.|+ +++......++...+..++|+|
T Consensus 14 ~~~~~~g~~-~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~--~~l~~~d~~~g~~~~lt~~~~~~~~~~~~sp 90 (388)
T 3pe7_A 14 YQDASTGAQ-VTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGP--WNYYLLDLNTQVATQLTEGRGDNTFGGFLSP 90 (388)
T ss_dssp EECTTTCCE-EEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSS--CEEEEEETTTCEEEECCCSSCBCSSSCEECT
T ss_pred EecCCCCcc-eEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCC--ceEEEEeCCCCceEEeeeCCCCCccceEEcC
Confidence 456666663 3456666665555 8999999999999874332 2455555 6776666666766666788999
Q ss_pred CCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEE--ECCCCCeEEEEE----------------------cCCc
Q 007229 158 TRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIR--FSPDGSKLISVS----------------------SDRK 213 (612)
Q Consensus 158 ~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~--~s~~~~~l~~~~----------------------~dg~ 213 (612)
+++. |+.++.++.|++||+.+++.......+...+.... ++|++++++... .+..
T Consensus 91 dg~~-l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (388)
T 3pe7_A 91 DDDA-LFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCR 169 (388)
T ss_dssp TSSE-EEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEE
T ss_pred CCCE-EEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcce
Confidence 9994 88888889999999999987766665655554443 489999887432 3467
Q ss_pred EEEEecCCCCeeeeeeccCCccccEEEEEEec-CCCEEEEEeCC
Q 007229 214 GLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSP-DGKKVLTVSAD 256 (612)
Q Consensus 214 i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~d 256 (612)
|.+||+.+++..... .+...+..++|+| ||+.|+....+
T Consensus 170 l~~~d~~~g~~~~l~----~~~~~~~~~~~sp~dg~~l~~~~~~ 209 (388)
T 3pe7_A 170 LMRVDLKTGESTVIL----QENQWLGHPIYRPYDDSTVAFCHEG 209 (388)
T ss_dssp EEEEETTTCCEEEEE----EESSCEEEEEEETTEEEEEEEEECS
T ss_pred EEEEECCCCceEEee----cCCccccccEECCCCCCEEEEEEec
Confidence 999999998766555 4566789999999 99988877653
No 165
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.90 E-value=3.6e-21 Score=180.22 Aligned_cols=243 Identities=9% Similarity=0.003 Sum_probs=171.0
Q ss_pred CceeEEEEccCCCEEEEecCCEEEEEeCC-CCceeeEeccC-CCceEEEEECCCCCE--EEEee-------------CcC
Q 007229 19 GRGILISGNPKTDTILYCNGRSVLIRYLD-KPLHVEFYGEH-GYPVTVARYSPNGEW--IASAD-------------VSG 81 (612)
Q Consensus 19 ~~v~~~~~s~d~~~l~~~~~~~i~i~~~~-~~~~~~~~~~h-~~~v~~~~~s~d~~~--las~~-------------~d~ 81 (612)
..+..++|+|||++|++++.+.|.+|++. +++........ .+.+.+++|+|||++ +++++ .++
T Consensus 40 ~~~~~~a~spdg~~l~~~~~~~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g 119 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAG 119 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCC
T ss_pred CCCcEEEECCCCCEEEEEccceEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCc
Confidence 36789999999999988875599999997 77665433211 133667999999994 55654 689
Q ss_pred eEEEeecCC-Cceeeeeee----ecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec-CCcee--eeec--cCCceEE
Q 007229 82 SVRIWGTHN-GFVLKNEFK----VLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD-SGTTV--GDFD--GHSRRVL 151 (612)
Q Consensus 82 ~i~iwd~~~-~~~~~~~~~----~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~-~~~~~--~~~~--~~~~~v~ 151 (612)
.+.+|++.. ++ +...+. .+...+.+++|+|||++|+++..... .+.+|..+ +++.. ..+. .|...+.
T Consensus 120 ~v~v~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~--~v~~~~~~~~g~~~~~~~~~~~~~g~~p~ 196 (365)
T 1jof_A 120 YGNVFSVSETGK-LEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTAN--KLWTHRKLASGEVELVGSVDAPDPGDHPR 196 (365)
T ss_dssp EEEEEEECTTCC-EEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTT--EEEEEEECTTSCEEEEEEEECSSTTCCEE
T ss_pred eEEEEccCCCCc-CcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCC--EEEEEEECCCCCEEEeeeEecCCCCCCCC
Confidence 999999974 54 333333 24568999999999999887765433 47777777 66543 3333 3467799
Q ss_pred EEEEcCCCCEEEEEeecCCeEEEEeCC--CCeee------eccc----cccc------ceEEEE-ECCCCCeEEEEEcCC
Q 007229 152 SCEFKPTRPFRIATCGEDFLVNFYEGP--PFKFK------LSHR----EHSN------FVNCIR-FSPDGSKLISVSSDR 212 (612)
Q Consensus 152 ~~~~~~~~~~~l~~~~~d~~i~~wd~~--~~~~~------~~~~----~~~~------~v~~~~-~s~~~~~l~~~~~dg 212 (612)
.++|+|+|++++++...++.|.+|++. +++.. ..+. +|.. .+..++ |+|||++|+++..+.
T Consensus 197 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~ 276 (365)
T 1jof_A 197 WVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRAN 276 (365)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEES
T ss_pred EeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCC
Confidence 999999999644444557899999754 45532 1222 2222 588999 999999988776533
Q ss_pred ------cEEEEecC-CCCeeeeeeccCCccccEEEEEEec---CCCEEEEEeCC-CcEEEEEe
Q 007229 213 ------KGLIYDGK-SGEKIGEFSSEDGHHGSIYAVSWSP---DGKKVLTVSAD-KSAKVWEI 264 (612)
Q Consensus 213 ------~i~vwd~~-~~~~~~~~~~~~~~~~~v~~i~~~~---~~~~l~~~~~d-g~i~iw~~ 264 (612)
.|.+|++. +++..........+...+..++|+| ||++|++++.+ +.|.+|++
T Consensus 277 ~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~ 339 (365)
T 1jof_A 277 KFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRW 339 (365)
T ss_dssp STTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEE
T ss_pred CCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEE
Confidence 79999996 5654432110112344456789999 89999998864 89999998
No 166
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.89 E-value=1.5e-21 Score=186.10 Aligned_cols=181 Identities=10% Similarity=-0.062 Sum_probs=124.3
Q ss_pred EEEeCCCCceeeEeccCCCc-----eEEEEECCCCCEEEEeeCc---CeEEEeecCCCceeeeeeeecCCC-eEEEEECC
Q 007229 42 LIRYLDKPLHVEFYGEHGYP-----VTVARYSPNGEWIASADVS---GSVRIWGTHNGFVLKNEFKVLSGR-IDDLQWSP 112 (612)
Q Consensus 42 ~i~~~~~~~~~~~~~~h~~~-----v~~~~~s~d~~~las~~~d---~~i~iwd~~~~~~~~~~~~~~~~~-i~~~~~s~ 112 (612)
...|..+++.+..+..+... +.+++|||||++||..... ..|.+||+.+++. . .+..+... ...+.|+|
T Consensus 13 ~~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~-~-~l~~~~~~~~~~~~~sp 90 (396)
T 3c5m_A 13 TFVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQA-V-QLTEGKGDNTFGGFIST 90 (396)
T ss_dssp EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEE-E-ECCCSSCBCTTTCEECT
T ss_pred eeecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcE-E-EeecCCCCccccceECC
Confidence 34578888877777766544 7889999999998877543 4688899988863 2 23333333 33478999
Q ss_pred CCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccc
Q 007229 113 DGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNF 192 (612)
Q Consensus 113 ~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~ 192 (612)
||++|+.++.+. .+.+++.++++.......+.. |+|+++ .++....+....+|.
T Consensus 91 dg~~l~~~~~~~---~l~~~d~~~~~~~~~~~~~~~------~~~~g~-~l~~~~~~~~~~~~~---------------- 144 (396)
T 3c5m_A 91 DERAFFYVKNEL---NLMKVDLETLEEQVIYTVDEE------WKGYGT-WVANSDCTKLVGIEI---------------- 144 (396)
T ss_dssp TSSEEEEEETTT---EEEEEETTTCCEEEEEECCTT------EEEEEE-EEECTTSSEEEEEEE----------------
T ss_pred CCCEEEEEEcCC---cEEEEECCCCCcEEEEecccc------cCCCCC-EEEeccCCccccccc----------------
Confidence 999999998876 344555556665554444443 666666 366666555555443
Q ss_pred eEEEEECCCCCeEEEE-----EcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEec-CCCEEEEEeC
Q 007229 193 VNCIRFSPDGSKLISV-----SSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSP-DGKKVLTVSA 255 (612)
Q Consensus 193 v~~~~~s~~~~~l~~~-----~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~ 255 (612)
..+.|+|+++.++.. ..+..|++||+.+++..... .+...+..+.|+| +++.|+..+.
T Consensus 145 -~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~----~~~~~~~~~~~sp~dg~~l~~~~~ 208 (396)
T 3c5m_A 145 -LKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH----QDTAWLGHPIYRPFDDSTVGFCHE 208 (396)
T ss_dssp -EGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE----EESSCEEEEEEETTEEEEEEEEEC
T ss_pred -cccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec----cCCcccccceECCCCCCEEEEEec
Confidence 124578999887765 35678999999988766555 4566788999999 7887776654
No 167
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.88 E-value=6e-20 Score=170.53 Aligned_cols=294 Identities=12% Similarity=0.066 Sum_probs=189.2
Q ss_pred cCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEc----------CCcEEEEecCCCCeeeeeeccCC---c
Q 007229 168 EDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSS----------DRKGLIYDGKSGEKIGEFSSEDG---H 234 (612)
Q Consensus 168 ~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----------dg~i~vwd~~~~~~~~~~~~~~~---~ 234 (612)
.|+.|.+||..+++.+..+..+..+ .++|+|||++|+++.. ++.|.+||..+++.+..+..... +
T Consensus 29 ~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~ 106 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQG 106 (361)
T ss_dssp GGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCB
T ss_pred ccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcccccc
Confidence 4789999999999988887766655 8999999999998863 57799999999998888743211 2
Q ss_pred cccEEEEEEecCCCEEEEEeC--CCcEEEEEeecCCCCCeeEee-eeccCccccceeeeeeeccCCEEEEEEcCCEEEEE
Q 007229 235 HGSIYAVSWSPDGKKVLTVSA--DKSAKVWEILEDGSGGRVIKT-FASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIF 311 (612)
Q Consensus 235 ~~~v~~i~~~~~~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 311 (612)
......++|+|||++|+++.. ++.|.+||+ .+++.+.. +....
T Consensus 107 g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~----~~~~~~~~~i~~~~------------------------------ 152 (361)
T 2oiz_A 107 LNYDGLFRQTTDGKFIVLQNASPATSIGIVDV----AKGDYVEDVTAAAG------------------------------ 152 (361)
T ss_dssp CCCGGGEEECTTSSEEEEEEESSSEEEEEEET----TTTEEEEEEGGGTT------------------------------
T ss_pred CCCcceEEECCCCCEEEEECCCCCCeEEEEEC----CCCcEEEEEecCCC------------------------------
Confidence 245668999999999998864 578999999 77777655 43221
Q ss_pred EcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCC-ceeeee------ceecccceE-EEEeeccEE
Q 007229 312 SASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGV-GYSSKL------EKKYDARIK-CLAAVEEVI 383 (612)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~-~~~~~~------~~~~~~~i~-~~~~~~~~l 383 (612)
...+.+.+.....+++.+.||.+.+|+... ++.... ......++. ....++..+
T Consensus 153 ------------------~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 214 (361)
T 2oiz_A 153 ------------------CWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKA 214 (361)
T ss_dssp ------------------EEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEE
T ss_pred ------------------cceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEE
Confidence 000111211124455555556665555543 221100 000111110 011234455
Q ss_pred EEecCCCeEEEEecCCCCCCccceeccCCC-cceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCC
Q 007229 384 FTAGFDNKVWRVPLCEGECGDAEHIDVGSQ-PLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDG 462 (612)
Q Consensus 384 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 462 (612)
+..+.++.+.++|+................ .....+. ......++|+|++
T Consensus 215 ~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------p~g~~~~a~~~dg 265 (361)
T 2oiz_A 215 HFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWV-----------------------------PGGYNLVGLHRAS 265 (361)
T ss_dssp EEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCE-----------------------------ECCSSCEEEETTT
T ss_pred EEEeCCCeEEEEEecCCCceecccccccCccccccccc-----------------------------cCCeeEEEEecCC
Confidence 556677788888875443210000000000 0000000 0111236899998
Q ss_pred CeEEEEec-----------CCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCc--cee
Q 007229 463 SEAIVGGQ-----------NGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSK--EVK 529 (612)
Q Consensus 463 ~~l~~~~~-----------dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~--~~~ 529 (612)
+.++++.. .+.|.+||+.+++. ...+..+. +.+++|+|||++|++++. +.|.+||..++ +.+
T Consensus 266 ~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~--v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~ 340 (361)
T 2oiz_A 266 GRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQR--VARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLL 340 (361)
T ss_dssp TEEEEEEESSCCTTCTTCCCSEEEEEETTTTEE--EEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEE
T ss_pred CeEEEEEccCCCcccccCCCceEEEEECCCCcE--EEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceee
Confidence 88887654 34899999999887 56666665 899999999999998887 99999999999 776
Q ss_pred eecccccccceeEEEecCCCc
Q 007229 530 LNNMLFHTARINCLAWSPSST 550 (612)
Q Consensus 530 ~~~~~~~~~~i~~~~~s~~~~ 550 (612)
..+..+......++++|||+
T Consensus 341 -~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 341 -RTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp -EEETTSCSSEEEEEECCCSC
T ss_pred -EEeccCCCCcEEEEecCCCC
Confidence 44444667788999999986
No 168
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.87 E-value=1.7e-19 Score=165.84 Aligned_cols=250 Identities=14% Similarity=0.127 Sum_probs=188.8
Q ss_pred eeccCCCCCCCceeEEEEccCCCEEEEecCC-------------------------EEEEEeCCCCceeeEec-cCCCce
Q 007229 9 TYACAPSTERGRGILISGNPKTDTILYCNGR-------------------------SVLIRYLDKPLHVEFYG-EHGYPV 62 (612)
Q Consensus 9 ~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~-------------------------~i~i~~~~~~~~~~~~~-~h~~~v 62 (612)
.||.. ...-+.+.+++++|+|+++++..++ .|.+||.++++.+..+. ++-...
T Consensus 15 ~wp~~-~~~l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p 93 (329)
T 3fvz_A 15 DWPGV-YLLPGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLP 93 (329)
T ss_dssp TCGGG-GCCCSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSE
T ss_pred CCchh-ceecCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCc
Confidence 44443 3445789999999999999888744 69999999998877654 455688
Q ss_pred EEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeee---------eecCCCeEEEEECC-CCCEEEEEe-CCCCeeeEEE
Q 007229 63 TVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEF---------KVLSGRIDDLQWSP-DGLRIVACG-DGKGKSFVRA 131 (612)
Q Consensus 63 ~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~---------~~~~~~i~~~~~s~-~~~~l~~~~-~~~~~~~i~i 131 (612)
..++++|+|+++++...++.|++||..........+ ..+......++|+| +++.+++.+ .+. +|
T Consensus 94 ~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~-----~I 168 (329)
T 3fvz_A 94 HGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNS-----RI 168 (329)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCC-----EE
T ss_pred eEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCC-----eE
Confidence 999999999999998889999999987653222223 23344689999999 777777765 344 35
Q ss_pred EEec-CCceeeeecc----------CCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecc--cccccceEEEEE
Q 007229 132 FMWD-SGTTVGDFDG----------HSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSH--REHSNFVNCIRF 198 (612)
Q Consensus 132 ~~~~-~~~~~~~~~~----------~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~--~~~~~~v~~~~~ 198 (612)
..|+ .++.+..+.. +......++++|++..++++...++.|++|+..+++.+..+ ..+...+.+++|
T Consensus 169 ~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~ 248 (329)
T 3fvz_A 169 VQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISY 248 (329)
T ss_dssp EEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEE
T ss_pred EEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeee
Confidence 5555 6666666642 22448999999995557888888999999999988887776 345677889999
Q ss_pred CC------CCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEe
Q 007229 199 SP------DGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 199 s~------~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~ 264 (612)
+| +|+..++...+..|++||..+++.+..+.....+...+..++++|+|..+++...++.|++|++
T Consensus 249 ~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~ 320 (329)
T 3fvz_A 249 IPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTL 320 (329)
T ss_dssp ETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEE
T ss_pred cCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeC
Confidence 99 3332222333558999999999998887433356677899999999988888888999999998
No 169
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.87 E-value=2.2e-19 Score=166.76 Aligned_cols=189 Identities=16% Similarity=0.043 Sum_probs=135.5
Q ss_pred cCCCEEEEec-------CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEee----------CcCeEEEeecCC
Q 007229 28 PKTDTILYCN-------GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASAD----------VSGSVRIWGTHN 90 (612)
Q Consensus 28 ~d~~~l~~~~-------~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~----------~d~~i~iwd~~~ 90 (612)
++++++.+.. ++.|++||..+++.+..+..+..+ .++|+|||++|+++. .++.|.+||..+
T Consensus 13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t 90 (361)
T 2oiz_A 13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADK 90 (361)
T ss_dssp CGGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTT
T ss_pred CCCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcC
Confidence 3666666653 469999999999998888777665 999999999999886 367899999998
Q ss_pred Cceeeeeeeec------CCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeee-eccCCceEEEEEEcCCCCEEE
Q 007229 91 GFVLKNEFKVL------SGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGD-FDGHSRRVLSCEFKPTRPFRI 163 (612)
Q Consensus 91 ~~~~~~~~~~~------~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l 163 (612)
.+. ...+... ......++|+|||++|+++...... .+.+++.++++.+.. +..... ..+.+.|+++..+
T Consensus 91 ~~~-~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~-~v~v~d~~~~~~~~~~i~~~~~--~~v~~~p~~~~~~ 166 (361)
T 2oiz_A 91 LTF-EKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPAT-SIGIVDVAKGDYVEDVTAAAGC--WSVIPQPNRPRSF 166 (361)
T ss_dssp CCE-EEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSE-EEEEEETTTTEEEEEEGGGTTE--EEEEECTTSSSEE
T ss_pred CcE-EEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCC-eEEEEECCCCcEEEEEecCCCc--ceeEEcCCCCeeE
Confidence 874 3344432 3457789999999999988754211 577888888888877 553222 2356778775578
Q ss_pred EEeecCCeEEEEeCCC-Ceee------ecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCC
Q 007229 164 ATCGEDFLVNFYEGPP-FKFK------LSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGE 223 (612)
Q Consensus 164 ~~~~~d~~i~~wd~~~-~~~~------~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~ 223 (612)
++.+.||.+.+|+... ++.. ..+.....++ .+.+++++..++..+.++.+.++|+..+.
T Consensus 167 ~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~ 232 (361)
T 2oiz_A 167 MTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDE 232 (361)
T ss_dssp EEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSS
T ss_pred EEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCC
Confidence 8899999999998765 4433 1122222222 33446778788888889999999987554
No 170
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.87 E-value=2.6e-19 Score=167.50 Aligned_cols=221 Identities=10% Similarity=0.066 Sum_probs=150.0
Q ss_pred CEEEEEeC--CCCceeeEec---cCCCceEEEEECCCCCEEEEeeCcCeEEEeecC-CCceeeeeeeec-CCCeEEEEEC
Q 007229 39 RSVLIRYL--DKPLHVEFYG---EHGYPVTVARYSPNGEWIASADVSGSVRIWGTH-NGFVLKNEFKVL-SGRIDDLQWS 111 (612)
Q Consensus 39 ~~i~i~~~--~~~~~~~~~~---~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~-~~~~~~~~~~~~-~~~i~~~~~s 111 (612)
+.|.+|++ ++++....-. ++...+..++|+|||++|++++.+ .|.+|++. +++ +....... .+....++|+
T Consensus 14 ~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~-~~~~~~~~~~g~~~~~~~s 91 (365)
T 1jof_A 14 GAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTE-IVHEASHPIGGHPRANDAD 91 (365)
T ss_dssp CEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTE-EEEEEEEECCSSGGGGCTT
T ss_pred CcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCC-EEEeeEeecCCCCccEEEC
Confidence 46777654 4555432211 244578899999999999999887 99999997 665 32222211 1346679999
Q ss_pred CCCCE--EEEEe-------------CCCCeeeEEEEEec-CCceeeeec----cCCceEEEEEEcCCCCEEEEEeecCCe
Q 007229 112 PDGLR--IVACG-------------DGKGKSFVRAFMWD-SGTTVGDFD----GHSRRVLSCEFKPTRPFRIATCGEDFL 171 (612)
Q Consensus 112 ~~~~~--l~~~~-------------~~~~~~~i~i~~~~-~~~~~~~~~----~~~~~v~~~~~~~~~~~~l~~~~~d~~ 171 (612)
|||++ ++++. .++ .+.+|..+ .++....+. .+...+.+++|+|+|++++++...++.
T Consensus 92 pdg~~l~~~~~~~~~~~~~~~~~~~~~g---~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~ 168 (365)
T 1jof_A 92 TNTRAIFLLAAKQPPYAVYANPFYKFAG---YGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANK 168 (365)
T ss_dssp SCCEEEEEEECSSTTCCEEEEEESSSCC---EEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTE
T ss_pred CCCCEEEEEEecCCcceeccceeecCCc---eEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCE
Confidence 99995 33432 233 46788777 465544443 256789999999999964444445789
Q ss_pred EEEEeCC-CCeeee--ccc--ccccceEEEEECCCCCeEEEEEc-CCcEEEEecC--CCCeee---eeeccC----Cccc
Q 007229 172 VNFYEGP-PFKFKL--SHR--EHSNFVNCIRFSPDGSKLISVSS-DRKGLIYDGK--SGEKIG---EFSSED----GHHG 236 (612)
Q Consensus 172 i~~wd~~-~~~~~~--~~~--~~~~~v~~~~~s~~~~~l~~~~~-dg~i~vwd~~--~~~~~~---~~~~~~----~~~~ 236 (612)
|++|++. +++... .+. .|...+..++|+|||++|++++. ++.+.+|++. +++... .+.... ++..
T Consensus 169 v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~ 248 (365)
T 1jof_A 169 LWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDP 248 (365)
T ss_dssp EEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCT
T ss_pred EEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCccc
Confidence 9999998 666432 232 23567999999999999988775 6899999765 565432 221111 1222
Q ss_pred ------cEEEEE-EecCCCEEEEEeCCC------cEEEEEe
Q 007229 237 ------SIYAVS-WSPDGKKVLTVSADK------SAKVWEI 264 (612)
Q Consensus 237 ------~v~~i~-~~~~~~~l~~~~~dg------~i~iw~~ 264 (612)
.+..++ |+|||++|+++..+. .|.+|++
T Consensus 249 ~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~ 289 (365)
T 1jof_A 249 ETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKL 289 (365)
T ss_dssp TTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEE
T ss_pred ccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEE
Confidence 588999 999999988776432 7999998
No 171
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.87 E-value=4e-20 Score=188.55 Aligned_cols=204 Identities=13% Similarity=0.141 Sum_probs=151.3
Q ss_pred eeEeccCCCceEEEEECCCCCEEEEe--eCcCeEEEeecCCCceeeeeeeecCCCeE---------EEEEC--CCCCE-E
Q 007229 52 VEFYGEHGYPVTVARYSPNGEWIASA--DVSGSVRIWGTHNGFVLKNEFKVLSGRID---------DLQWS--PDGLR-I 117 (612)
Q Consensus 52 ~~~~~~h~~~v~~~~~s~d~~~las~--~~d~~i~iwd~~~~~~~~~~~~~~~~~i~---------~~~~s--~~~~~-l 117 (612)
...+.+|...+..++|++++.++++. +.++...||....+. ....+..+...+. ...|+ |||++ |
T Consensus 16 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~l 94 (662)
T 3azo_A 16 AALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADG-AEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLL 94 (662)
T ss_dssp HHHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTS-CEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEE
T ss_pred HHHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCC-CcceeCCCCccccccccccCCccceeeeecCCCeEE
Confidence 34467899999999999987777777 568899999965443 2345666666655 55565 99999 8
Q ss_pred EEEeCCCCeeeEEEEEecCC----ceeeeecc-----CCceEEEEEEcCCCCEEEEEeecC----------CeEEEEeCC
Q 007229 118 VACGDGKGKSFVRAFMWDSG----TTVGDFDG-----HSRRVLSCEFKPTRPFRIATCGED----------FLVNFYEGP 178 (612)
Q Consensus 118 ~~~~~~~~~~~i~i~~~~~~----~~~~~~~~-----~~~~v~~~~~~~~~~~~l~~~~~d----------~~i~~wd~~ 178 (612)
+.+.... .+||.++.. .....+.. |...+..++|+|||+. |+.++.+ ..|++||+.
T Consensus 95 a~~~~~~----~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~-l~~~~~~~~~~~~~~~~~~i~~~~~~ 169 (662)
T 3azo_A 95 VFTHFGD----QRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGE-VWCMAEEFTGEGPSDVRRFLAAVPLD 169 (662)
T ss_dssp EEEBTTT----CCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTE-EEEEEEEECSSSTTCEEEEEEEEETT
T ss_pred EEEECCC----CeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCE-EEEEEecccCCCCCCceeEEEEEECC
Confidence 8776653 258888843 56666766 7788999999999995 7777666 589999998
Q ss_pred C------Ceeeeccc-ccccceEEEEECCCCCeEEEEEcCC--------cEEEEecC-CCC--eeeeeeccCCccccEEE
Q 007229 179 P------FKFKLSHR-EHSNFVNCIRFSPDGSKLISVSSDR--------KGLIYDGK-SGE--KIGEFSSEDGHHGSIYA 240 (612)
Q Consensus 179 ~------~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg--------~i~vwd~~-~~~--~~~~~~~~~~~~~~v~~ 240 (612)
+ ++.. .+. .+...+..++|||||++|+.++.++ .|++||+. +++ ....+. ..+...+..
T Consensus 170 ~~~~~~~~~~~-~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~--~~~~~~~~~ 246 (662)
T 3azo_A 170 GSAAADRSAVR-ELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLL--GGPEEAIAQ 246 (662)
T ss_dssp STTTTCGGGSE-ESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEE--EETTBCEEE
T ss_pred CCccccCCcee-EEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeC--CCCCceEcc
Confidence 8 5543 444 5567788999999999999887653 79999998 562 233331 245678999
Q ss_pred EEEecCCCEEEEEeCCCcEEEEEe
Q 007229 241 VSWSPDGKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 241 i~~~~~~~~l~~~~~dg~i~iw~~ 264 (612)
++|+|||++++++..++..++|.+
T Consensus 247 ~~~spdg~l~~~~~~~~~~~l~~~ 270 (662)
T 3azo_A 247 AEWAPDGSLIVATDRTGWWNLHRV 270 (662)
T ss_dssp EEECTTSCEEEEECTTSSCEEEEE
T ss_pred eEECCCCeEEEEECCCCCeEEEEE
Confidence 999999997777777885555555
No 172
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.86 E-value=3.6e-19 Score=181.50 Aligned_cols=241 Identities=9% Similarity=-0.049 Sum_probs=171.7
Q ss_pred CCCceeEEEEccCCCEEEEe--c-CCEEEEEeCCCCceeeEeccCCCceE---------EEEEC--CCCCE-EEEeeC-c
Q 007229 17 ERGRGILISGNPKTDTILYC--N-GRSVLIRYLDKPLHVEFYGEHGYPVT---------VARYS--PNGEW-IASADV-S 80 (612)
Q Consensus 17 ~~~~v~~~~~s~d~~~l~~~--~-~~~i~i~~~~~~~~~~~~~~h~~~v~---------~~~~s--~d~~~-las~~~-d 80 (612)
+...+..+++++++-+++.. . ++...||....+...+.+..|...+. ...|+ |||++ ||.++. +
T Consensus 22 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~ 101 (662)
T 3azo_A 22 RSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGD 101 (662)
T ss_dssp TCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTT
T ss_pred cCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCC
Confidence 45688999999887666666 3 57888998654555666777877776 66665 99998 776653 5
Q ss_pred CeEEEeecC--C-Cceeeeeeee-----cCCCeEEEEECCCCCEEEEEeCCCC-----eeeEEEEEec--CC-----cee
Q 007229 81 GSVRIWGTH--N-GFVLKNEFKV-----LSGRIDDLQWSPDGLRIVACGDGKG-----KSFVRAFMWD--SG-----TTV 140 (612)
Q Consensus 81 ~~i~iwd~~--~-~~~~~~~~~~-----~~~~i~~~~~s~~~~~l~~~~~~~~-----~~~i~i~~~~--~~-----~~~ 140 (612)
..|.+|++. + ++ . ..+.. |...+..++|||||++|++++.+.. .....|+.|+ ++ ...
T Consensus 102 ~~l~~~~~~~~g~~~-~-~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 179 (662)
T 3azo_A 102 QRLYAFEPDAPGGAV-P-RPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV 179 (662)
T ss_dssp CCEEEECTTSTTCCC-C-EECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS
T ss_pred CeEEEEcCCCCCCCC-C-EeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce
Confidence 667777776 3 43 2 23444 5678899999999999999886510 1123455555 41 344
Q ss_pred eeec-cCCceEEEEEEcCCCCEEEEEeecC--------CeEEEEeCC-CC---eeeecccccccceEEEEECCCCCeEEE
Q 007229 141 GDFD-GHSRRVLSCEFKPTRPFRIATCGED--------FLVNFYEGP-PF---KFKLSHREHSNFVNCIRFSPDGSKLIS 207 (612)
Q Consensus 141 ~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d--------~~i~~wd~~-~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~ 207 (612)
..+. .+...+..++|+|||++ |+..+.+ ..|++||+. ++ +......+|...+..++|+|||+++++
T Consensus 180 ~~l~~~~~~~~~~~~~SpDG~~-la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~ 258 (662)
T 3azo_A 180 RELSDDAHRFVTGPRLSPDGRQ-AVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVA 258 (662)
T ss_dssp EESSCSCSSEECCCEECTTSSE-EEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEE
T ss_pred eEEEecCCCcccCceECCCCCE-EEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEE
Confidence 5566 67788899999999995 6665544 489999998 56 444444456788999999999997777
Q ss_pred EEcCC--cEEEEecCCCCeeeeeeccCCcccc--------EEEEEEecCCCEEEEEeCCCcEEEEEe
Q 007229 208 VSSDR--KGLIYDGKSGEKIGEFSSEDGHHGS--------IYAVSWSPDGKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 208 ~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~--------v~~i~~~~~~~~l~~~~~dg~i~iw~~ 264 (612)
+..++ .|.+||+.+++...... .+... +..++|+|++++++++.. +.+++|.+
T Consensus 259 ~~~~~~~~l~~~~~~~~~~~~l~~---~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~ 321 (662)
T 3azo_A 259 TDRTGWWNLHRVDPATGAATQLCR---REEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGIL 321 (662)
T ss_dssp ECTTSSCEEEEECTTTCCEEESSC---CSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEE
T ss_pred ECCCCCeEEEEEECCCCceeeccc---ccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEE
Confidence 77777 66677776776554431 12111 467899999999999988 99999966
No 173
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.84 E-value=1.5e-17 Score=150.07 Aligned_cols=235 Identities=15% Similarity=0.180 Sum_probs=173.2
Q ss_pred CCCceeEEEEccCCCEEEEec-CCEEEEEeCCCCceeeEec------cCCCceEEEEE-CCCCCEEEEeeC-cCeEEEee
Q 007229 17 ERGRGILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEFYG------EHGYPVTVARY-SPNGEWIASADV-SGSVRIWG 87 (612)
Q Consensus 17 ~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~~------~h~~~v~~~~~-s~d~~~las~~~-d~~i~iwd 87 (612)
+-..+.+++++|+|+++++.. ++.|.+||.+ ++.+..+. +|...+..+++ .++++++++... ++.|.+||
T Consensus 28 ~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d 106 (286)
T 1q7f_A 28 QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN 106 (286)
T ss_dssp CBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC
T ss_pred ccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC
Confidence 445789999999999777765 7899999987 55555553 34567899999 578877777643 88999999
Q ss_pred cCCCceeeeeee-ecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec-CCceeeeec--cCCceEEEEEEcCCCCEEE
Q 007229 88 THNGFVLKNEFK-VLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD-SGTTVGDFD--GHSRRVLSCEFKPTRPFRI 163 (612)
Q Consensus 88 ~~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~-~~~~~~~~~--~~~~~v~~~~~~~~~~~~l 163 (612)
.+++.+ ..+. .+...+..++++|+|+.+++...++ .|+.|+ .++.+..+. .+...+..++++|+++ ++
T Consensus 107 -~~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~-----~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~-l~ 178 (286)
T 1q7f_A 107 -QYGQFV-RKFGATILQHPRGVTVDNKGRIIVVECKVM-----RVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQE-IF 178 (286)
T ss_dssp -TTSCEE-EEECTTTCSCEEEEEECTTSCEEEEETTTT-----EEEEECTTSCEEEEEECTTTCSSEEEEEECSSSE-EE
T ss_pred -CCCcEE-EEecCccCCCceEEEEeCCCCEEEEECCCC-----EEEEEcCCCCEEEEeCCCCccCCcEEEEECCCCC-EE
Confidence 455533 2332 3345789999999998776655544 355555 456665554 4556789999999997 67
Q ss_pred EEeecCCeEEEEeCCCCeeeecccc--cccceEEEEECCCCCeEEEEEcCC-cEEEEecCCCCeeeeeeccCCccccEEE
Q 007229 164 ATCGEDFLVNFYEGPPFKFKLSHRE--HSNFVNCIRFSPDGSKLISVSSDR-KGLIYDGKSGEKIGEFSSEDGHHGSIYA 240 (612)
Q Consensus 164 ~~~~~d~~i~~wd~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~dg-~i~vwd~~~~~~~~~~~~~~~~~~~v~~ 240 (612)
++...++.|++||.. ++.+..+.. +...+..++++|+|+++++...++ .|.+||. +++.+..+... .....+.+
T Consensus 179 v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~-~~~~~~~~ 255 (286)
T 1q7f_A 179 ISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESK-VKHAQCFD 255 (286)
T ss_dssp EEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEES-SCCSCEEE
T ss_pred EEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEccc-CCCCccee
Confidence 887889999999974 445545433 336789999999998888777775 9999995 56766666321 22335789
Q ss_pred EEEecCCCEEEEEeCCCcEEEEEe
Q 007229 241 VSWSPDGKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 241 i~~~~~~~~l~~~~~dg~i~iw~~ 264 (612)
++++|+|+++++ +.++.|++|++
T Consensus 256 i~~~~~g~l~vs-~~~~~v~v~~~ 278 (286)
T 1q7f_A 256 VALMDDGSVVLA-SKDYRLYIYRY 278 (286)
T ss_dssp EEEETTTEEEEE-ETTTEEEEEEC
T ss_pred EEECCCCcEEEE-CCCCeEEEEEc
Confidence 999999986666 67999999998
No 174
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.84 E-value=5e-19 Score=168.58 Aligned_cols=240 Identities=11% Similarity=-0.016 Sum_probs=160.9
Q ss_pred eeEEEEccCCCEEEEecC----CEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeee
Q 007229 21 GILISGNPKTDTILYCNG----RSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKN 96 (612)
Q Consensus 21 v~~~~~s~d~~~l~~~~~----~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~ 96 (612)
+..++|||||++|++..+ ..|.+||+.+++..+...++......+.|||||++|+.++.++.|.+||+.+++. ..
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~-~~ 116 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEE-QV 116 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCE-EE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCc-EE
Confidence 677899999999998853 3899999999876654443333334488999999999999999999999998863 33
Q ss_pred eeeecCCCeEE-------------------EEECCCCCEEEEEeC--CCCeeeEEEEEecCCceeeeeccCCceEEEEEE
Q 007229 97 EFKVLSGRIDD-------------------LQWSPDGLRIVACGD--GKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEF 155 (612)
Q Consensus 97 ~~~~~~~~i~~-------------------~~~s~~~~~l~~~~~--~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~ 155 (612)
....+...... ..|+|+++.++.... ......+.+++.++++... +..+...+..+.|
T Consensus 117 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~-~~~~~~~~~~~~~ 195 (396)
T 3c5m_A 117 IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEV-IHQDTAWLGHPIY 195 (396)
T ss_dssp EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEE-EEEESSCEEEEEE
T ss_pred EEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEe-eccCCcccccceE
Confidence 33333332222 456788877765531 0111123344444555443 3356778899999
Q ss_pred cC-CCCEEEEEeecC------CeEEEEeCCCCeeeeccccc-ccceEEEEECCCCCeEEEEEcC-----CcEEEEecCCC
Q 007229 156 KP-TRPFRIATCGED------FLVNFYEGPPFKFKLSHREH-SNFVNCIRFSPDGSKLISVSSD-----RKGLIYDGKSG 222 (612)
Q Consensus 156 ~~-~~~~~l~~~~~d------~~i~~wd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~d-----g~i~vwd~~~~ 222 (612)
+| ++.. ++..+.+ ..|.+||+..++........ ...+..++|+|||++|+.++.+ +.|++||+.++
T Consensus 196 sp~dg~~-l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g 274 (396)
T 3c5m_A 196 RPFDDST-VGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETL 274 (396)
T ss_dssp ETTEEEE-EEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTC
T ss_pred CCCCCCE-EEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCC
Confidence 99 7764 4444433 46889998766544333322 3358889999999988877654 44999999888
Q ss_pred CeeeeeeccCCccccEEEEEEec-CCCEEEEEe----------------CCCcEEEEEeecCCCCCee
Q 007229 223 EKIGEFSSEDGHHGSIYAVSWSP-DGKKVLTVS----------------ADKSAKVWEILEDGSGGRV 273 (612)
Q Consensus 223 ~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~----------------~dg~i~iw~~~~~~~~~~~ 273 (612)
+...... .. ... +.|+| ||+++++++ .++.|.+||+ .+++.
T Consensus 275 ~~~~l~~----~~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~----~~~~~ 332 (396)
T 3c5m_A 275 ENEEVMV----MP-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNT----KAKSA 332 (396)
T ss_dssp CEEEEEE----CC-SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEET----TTTBC
T ss_pred CeEEeee----CC-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEec----ccCce
Confidence 7644331 11 122 88999 999888754 2467999998 55543
No 175
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.83 E-value=1.3e-16 Score=155.29 Aligned_cols=325 Identities=13% Similarity=0.065 Sum_probs=217.0
Q ss_pred CEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecC--CCCeeeeeeccCCcccc
Q 007229 160 PFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGK--SGEKIGEFSSEDGHHGS 237 (612)
Q Consensus 160 ~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~--~~~~~~~~~~~~~~~~~ 237 (612)
+.++++...++.|.++|..+++.+..+... ..+..+.|+|||+++++++.|+.|.+||+. +++.+..+. ....
T Consensus 167 ~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~----~G~~ 241 (567)
T 1qks_A 167 NLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIK----IGSE 241 (567)
T ss_dssp GEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEE----CCSE
T ss_pred ceEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEe----cCCC
Confidence 346888888999999999999988877533 356799999999999999999999999995 888887773 3445
Q ss_pred EEEEEEe----cCCCEEEEEeC-CCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEE
Q 007229 238 IYAVSWS----PDGKKVLTVSA-DKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFS 312 (612)
Q Consensus 238 v~~i~~~----~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 312 (612)
...++|+ |||++++++.. ++++.++|. .+.+.+..+.......
T Consensus 242 P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~----~t~~~~~~i~~~~~~~---------------------------- 289 (567)
T 1qks_A 242 ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDG----ETLEPKKIQSTRGMTY---------------------------- 289 (567)
T ss_dssp EEEEEECCSTTCTTTEEEEEEEETTEEEEEET----TTCCEEEEEECCEECT----------------------------
T ss_pred CceeEEccccCCCCCEEEEEEccCCeEEEEEC----CCCcEEEEEecccccc----------------------------
Confidence 6899999 69999888765 589999998 8888887765431000
Q ss_pred cCCCCCCceeecCccc-ceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCe
Q 007229 313 ASNLDKAPLSFSGHVK-NVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNK 391 (612)
Q Consensus 313 ~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~ 391 (612)
.....|.. .+..+..++.....++....+|.|.++|.........
T Consensus 290 --------~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v-------------------------- 335 (567)
T 1qks_A 290 --------DEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKT-------------------------- 335 (567)
T ss_dssp --------TTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEE--------------------------
T ss_pred --------ccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCcccee--------------------------
Confidence 00000111 3445555533345555566667777777654321110
Q ss_pred EEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEe-c
Q 007229 392 VWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGG-Q 470 (612)
Q Consensus 392 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~ 470 (612)
..+........+.|+|++++++++. .
T Consensus 336 -----------------------------------------------------~~i~~~~~~~d~~~~pdgr~~~va~~~ 362 (567)
T 1qks_A 336 -----------------------------------------------------TEISAERFLHDGGLDGSHRYFITAANA 362 (567)
T ss_dssp -----------------------------------------------------EEEECCSSEEEEEECTTSCEEEEEEGG
T ss_pred -----------------------------------------------------eeeeccccccCceECCCCCEEEEEeCC
Confidence 0011112356788999999987766 5
Q ss_pred CCeEEEEEccCcccccceee---ccccCceEEEEEcCCC-cEEEEEc-CCCeEEEEecCC-------cceeeeccccccc
Q 007229 471 NGKLHIYSISGNTLTEEMVL---EKHRGAITVIQYSPDV-SMFASAD-GNREAIVWDRVS-------KEVKLNNMLFHTA 538 (612)
Q Consensus 471 dg~v~i~d~~~~~~~~~~~~---~~~~~~i~~~~~s~~~-~~l~~~~-~d~~i~iwd~~~-------~~~~~~~~~~~~~ 538 (612)
++.|.++|+.++++...... ..|.+.-..+ ++|++ ...++.. .++.|.++|..+ .+.+ ..+.....
T Consensus 363 sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv-~~i~~~g~ 440 (567)
T 1qks_A 363 RNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKIL-DSFPALGG 440 (567)
T ss_dssp GTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEE-EEEECSCS
T ss_pred CCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEE-EEEecCCC
Confidence 78999999999887433332 1243322222 68874 4445543 568999999987 3333 33332333
Q ss_pred ceeEEEecCCCcEEEEeec-------CcEEEEEEccCC-----Ccceeeeec--------ccccCeeeEEEe-cCceEEE
Q 007229 539 RINCLAWSPSSTMVATGSI-------DTCVIIYEIGKP-----ASSRITIKN--------AHLGGVYGVAFM-DDFNVVS 597 (612)
Q Consensus 539 ~i~~~~~s~~~~~l~s~~~-------d~~i~iwd~~~~-----~~~~~~~~~--------~h~~~v~~~~~~-~~~~l~s 597 (612)
.-..+..+|++++|.+... .+.|.++|+.+. . ..+..+. .-...+..+.|+ +++++..
T Consensus 441 g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 519 (567)
T 1qks_A 441 GSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSD-PEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWF 519 (567)
T ss_dssp CCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSC-CCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEE
T ss_pred CCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccC-CCcEEeccccccccCCCCcceEeeeECCCCCEEEE
Confidence 3345788999999887652 358999999874 2 2223332 123578899999 8887655
Q ss_pred c--c---CCCeEEEEEecc
Q 007229 598 S--G---EDACIRVWRLAT 611 (612)
Q Consensus 598 ~--~---~d~~i~~w~~~~ 611 (612)
+ + .++.|.++|.++
T Consensus 520 s~~~~~~~~~~i~v~D~~t 538 (567)
T 1qks_A 520 SVWNGKDQESALVVVDDKT 538 (567)
T ss_dssp EEECCTTSCCEEEEEETTT
T ss_pred EeecCCCCCCcEEEEECCC
Confidence 4 2 479999999776
No 176
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.83 E-value=1.7e-17 Score=154.71 Aligned_cols=259 Identities=16% Similarity=0.162 Sum_probs=169.1
Q ss_pred ceeEEEEccCCCEEEEec----------CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCc---C--eEE
Q 007229 20 RGILISGNPKTDTILYCN----------GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVS---G--SVR 84 (612)
Q Consensus 20 ~v~~~~~s~d~~~l~~~~----------~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d---~--~i~ 84 (612)
.+...++ ||++|++.. .+.|.+||+++++... + ..+..++|||||++||.++.+ + .|.
T Consensus 16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~ 88 (347)
T 2gop_A 16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEIW 88 (347)
T ss_dssp EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEEE
T ss_pred EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceEE
Confidence 5677888 999999863 4689999999887654 4 568899999999999988754 2 488
Q ss_pred EeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCC------------------------CeeeEEEEEecCCcee
Q 007229 85 IWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGK------------------------GKSFVRAFMWDSGTTV 140 (612)
Q Consensus 85 iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~------------------------~~~~i~i~~~~~~~~~ 140 (612)
+||+.+++ .. .+..+.. +..++|+|||+.|+.++.+. ....+.+++.++++.+
T Consensus 89 ~~~~~~g~-~~-~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~ 165 (347)
T 2gop_A 89 VADLETLS-SK-KILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVI 165 (347)
T ss_dssp EEETTTTE-EE-EEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEE
T ss_pred EEECCCCc-eE-EEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEE
Confidence 88888876 33 3333344 99999999999999887430 0112334444466553
Q ss_pred eeeccCCceEEEEEEcCCCCEEEEEeecCC-------eEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcC--
Q 007229 141 GDFDGHSRRVLSCEFKPTRPFRIATCGEDF-------LVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSD-- 211 (612)
Q Consensus 141 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~-------~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-- 211 (612)
..+.. . .+..++|+|++ +++++..+. ...+|.+.+++. ..+..+ ..+..+ +|||++|+.++.+
T Consensus 166 ~~l~~-~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~l~~~-~~~~~~--spdg~~l~~~~~~~~ 237 (347)
T 2gop_A 166 EEFEK-P-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWEDGKE-EKMFEK-VSFYAV--DSDGERILLYGKPEK 237 (347)
T ss_dssp EEEEE-E-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEETTEE-EEEEEE-ESEEEE--EECSSCEEEEECCSS
T ss_pred eeecC-C-CcccccCCCCe--EEEEEecccccccccccccEEEeCCCce-EEeccC-cceeeE--CCCCCEEEEEEcccc
Confidence 55554 3 78899999999 466665432 334443335543 334344 555554 9999999887754
Q ss_pred ------CcEEEEecCCCCeeeeeeccCCccccEEE-EEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccc
Q 007229 212 ------RKGLIYDGKSGEKIGEFSSEDGHHGSIYA-VSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNA 284 (612)
Q Consensus 212 ------g~i~vwd~~~~~~~~~~~~~~~~~~~v~~-i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 284 (612)
..|.+|| +++..... ..+...+.. +.|+ ++ ++++++.++.+++| +. +++.......
T Consensus 238 ~~~~~~~~l~~~d--~~~~~~l~---~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~----~g~~~~~~~~----- 300 (347)
T 2gop_A 238 KYMSEHNKLYIYD--GKEVMGIL---DEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IW----DGEIKPIAKG----- 300 (347)
T ss_dssp SCCCSSCEEEEEC--SSCEEESS---TTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EE----SSSEEEEECS-----
T ss_pred CCccccceEEEEC--CCceEecc---ccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-Ec----CCceEEEecC-----
Confidence 3677888 55544333 255677886 8999 88 88889999999999 84 3333222221
Q ss_pred cceeeeeeeccCCEEEEEEcCCEE-EEEEcC
Q 007229 285 VEDMLVGCLWQNDHLITVSLGGII-SIFSAS 314 (612)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~ 314 (612)
...+..+.+++..+++++.++.. .+|...
T Consensus 301 -~~~v~~~~~s~~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 301 -RHWIMGFDVDEIVVYLKETATRLRELFTWD 330 (347)
T ss_dssp -SSEEEEEEESSSEEEEEECSSSCCEEEEES
T ss_pred -CCeEEeeeeeCcEEEEEcCCCChHHheEeC
Confidence 12334444444455555555543 566544
No 177
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.82 E-value=7.8e-18 Score=156.96 Aligned_cols=224 Identities=11% Similarity=0.088 Sum_probs=163.0
Q ss_pred CceeEEEEccCCCEEEEecC----C--EEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeC-------------
Q 007229 19 GRGILISGNPKTDTILYCNG----R--SVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADV------------- 79 (612)
Q Consensus 19 ~~v~~~~~s~d~~~l~~~~~----~--~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~------------- 79 (612)
..+..++|||||++||+... + .|.+|++.+++....... .. +..++|+|||+.|+.++.
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~-~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~ 136 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEA-KN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDD 136 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEE-SE-EEEEEECTTSSEEEEEEECCCC---------
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcC-CC-ccceeECCCCCEEEEEEccCCCcCCcEEEcc
Confidence 45778999999999999862 3 588889998877665443 34 999999999999998863
Q ss_pred --------------cCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCe---e-eEEEEEecCCceee
Q 007229 80 --------------SGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGK---S-FVRAFMWDSGTTVG 141 (612)
Q Consensus 80 --------------d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~---~-~i~i~~~~~~~~~~ 141 (612)
...|.+||+.+++.+ ..+.. . .+..++|+||| .++++..+... . ...+|.++ .....
T Consensus 137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~-~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d-~~~~~ 211 (347)
T 2gop_A 137 VPAWFDDLGFFDGEKTTFWIFDTESEEVI-EEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE-DGKEE 211 (347)
T ss_dssp CCCC---------CEEEEEEEETTTTEEE-EEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE-TTEEE
T ss_pred cceeecCcccccCccceEEEEECCCCeEE-eeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeC-CCceE
Confidence 257999999988631 23444 3 88899999999 66666543210 1 24677777 44444
Q ss_pred eeccCCceEEEEEEcCCCCEEEEEeecC--------CeEEEEeCCCCeeeecccccccceEE-EEECCCCCeEEEEEcCC
Q 007229 142 DFDGHSRRVLSCEFKPTRPFRIATCGED--------FLVNFYEGPPFKFKLSHREHSNFVNC-IRFSPDGSKLISVSSDR 212 (612)
Q Consensus 142 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d--------~~i~~wd~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~~~~~dg 212 (612)
.+..+ ..+..+ +|+|++ ++..+.+ ..|.+|| +++......++...+.. +.|+ |+ ++++++.++
T Consensus 212 ~l~~~-~~~~~~--spdg~~-l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~ 283 (347)
T 2gop_A 212 KMFEK-VSFYAV--DSDGER-ILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEG 283 (347)
T ss_dssp EEEEE-ESEEEE--EECSSC-EEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETT
T ss_pred EeccC-cceeeE--CCCCCE-EEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCC
Confidence 55444 555544 999996 5544432 4788888 66655555667778886 9999 88 888999999
Q ss_pred cEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcE-EEEEe
Q 007229 213 KGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSA-KVWEI 264 (612)
Q Consensus 213 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i-~iw~~ 264 (612)
.+++| +.+++..... .+...+.+++|+| ..+++++.++.. .+|.+
T Consensus 284 ~~~l~-~~~g~~~~~~----~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~ 329 (347)
T 2gop_A 284 SVNLY-IWDGEIKPIA----KGRHWIMGFDVDE--IVVYLKETATRLRELFTW 329 (347)
T ss_dssp EEEEE-EESSSEEEEE----CSSSEEEEEEESS--SEEEEEECSSSCCEEEEE
T ss_pred cEEEE-EcCCceEEEe----cCCCeEEeeeeeC--cEEEEEcCCCChHHheEe
Confidence 99999 8866654444 4577899999999 677777777765 89988
No 178
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.82 E-value=8.8e-16 Score=149.43 Aligned_cols=332 Identities=13% Similarity=0.061 Sum_probs=223.2
Q ss_pred EccCCCEEEEec-CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecC--CCceeeeeeeecC
Q 007229 26 GNPKTDTILYCN-GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTH--NGFVLKNEFKVLS 102 (612)
Q Consensus 26 ~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~--~~~~~~~~~~~~~ 102 (612)
.+|.+.++++.. ++.|.++|..+++.+..+.. ...+..++|||||++|.+++.|+.|.+||+. +.+ +...+.. .
T Consensus 163 ~d~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~-~v~~i~~-G 239 (567)
T 1qks_A 163 WDLENLFSVTLRDAGQIALIDGSTYEIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPT-TVAEIKI-G 239 (567)
T ss_dssp CCGGGEEEEEETTTTEEEEEETTTCCEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCC-EEEEEEC-C
T ss_pred cCCCceEEEEeCCCCeEEEEECCCCeEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCc-EeEEEec-C
Confidence 345444444444 68999999999999887763 3456799999999999999999999999996 665 3334443 3
Q ss_pred CCeEEEEEC----CCCCEEEEEeCCCCeeeEEEEEecCCceeeeecc----------CCc-eEEEEEEcCCCCEEEEEee
Q 007229 103 GRIDDLQWS----PDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDG----------HSR-RVLSCEFKPTRPFRIATCG 167 (612)
Q Consensus 103 ~~i~~~~~s----~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~----------~~~-~v~~~~~~~~~~~~l~~~~ 167 (612)
.....++|+ |||++++++..... .+.+++..+.+.+..+.. |.. .+..+.++++++..++...
T Consensus 240 ~~P~~ia~s~~~~pDGk~l~v~n~~~~--~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~ 317 (567)
T 1qks_A 240 SEARSIETSKMEGWEDKYAIAGAYWPP--QYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVK 317 (567)
T ss_dssp SEEEEEEECCSTTCTTTEEEEEEEETT--EEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEET
T ss_pred CCCceeEEccccCCCCCEEEEEEccCC--eEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEec
Confidence 356899999 79999998887655 366777668888776642 222 6888999999887777778
Q ss_pred cCCeEEEEeCCCCeeeec-ccccccceEEEEECCCCCeEEEEE-cCCcEEEEecCCCCeeeeeec-c-CCccccEEEEEE
Q 007229 168 EDFLVNFYEGPPFKFKLS-HREHSNFVNCIRFSPDGSKLISVS-SDRKGLIYDGKSGEKIGEFSS-E-DGHHGSIYAVSW 243 (612)
Q Consensus 168 ~d~~i~~wd~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~-~-~~~~~~v~~i~~ 243 (612)
.+|.|.++|....+.... ..........+.|+|++++++++. .++.|.++|+.+++....+.. . ..|.+.-..+ +
T Consensus 318 ~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~ 396 (567)
T 1qks_A 318 ETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-V 396 (567)
T ss_dssp TTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-E
T ss_pred CCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-E
Confidence 889999999877543222 112334567889999999987766 478999999999988777643 1 1343222222 6
Q ss_pred ecCCCEEEEEe--CCCcEEEEEeecCCC---CCeeEeeeeccCccccceeeeeeeccCCEEEEEEc-------CCEEEEE
Q 007229 244 SPDGKKVLTVS--ADKSAKVWEILEDGS---GGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSL-------GGIISIF 311 (612)
Q Consensus 244 ~~~~~~l~~~~--~dg~i~iw~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~i~~~ 311 (612)
+|++..+.+.+ .++.|.++|...... ..+.++.+..... .........++..+.+... .+.|.++
T Consensus 397 ~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~---g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~ 473 (567)
T 1qks_A 397 HPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGG---GSLFIKTHPNSQYLYVDATLNPEAEISGSVAVF 473 (567)
T ss_dssp ETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCS---CCCCEECCTTCSEEEEECTTCSSHHHHTCEEEE
T ss_pred CCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCC---CCEEEEeCCCCCeEEEecCCCCCcccCceEEEE
Confidence 78755554433 468999999832110 1556666654321 1122233344667777663 4599999
Q ss_pred EcCCC-----CCCceeec--------CcccceeEEEEEecCCcEEEEEe-----cCCcEEEEEcCCceeeeece
Q 007229 312 SASNL-----DKAPLSFS--------GHVKNVSTLTALKISQQTILSSS-----YDGAIIKWIRGVGYSSKLEK 367 (612)
Q Consensus 312 ~~~~~-----~~~~~~~~--------~~~~~v~~~~~~~~~~~~l~~~~-----~dg~i~~wd~~~~~~~~~~~ 367 (612)
|+.+. ......+. .....+..+.|++. ++.+..+. .++.|.++|..+.+......
T Consensus 474 d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 546 (567)
T 1qks_A 474 DIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKD-GTEVWFSVWNGKDQESALVVVDDKTLELKHVIK 546 (567)
T ss_dssp EGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTT-SSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred ECCcccccccCCCcEEeccccccccCCCCcceEeeeECCC-CCEEEEEeecCCCCCCcEEEEECCCceEEEEeC
Confidence 98766 32222222 12346677777743 55554442 37999999999988765443
No 179
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.79 E-value=9.2e-17 Score=147.64 Aligned_cols=244 Identities=14% Similarity=0.138 Sum_probs=173.0
Q ss_pred CCceEEEEECCCCCEEEEeeCc------------------------CeEEEeecCCCceeeeeeeecCCCeEEEEECCCC
Q 007229 59 GYPVTVARYSPNGEWIASADVS------------------------GSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDG 114 (612)
Q Consensus 59 ~~~v~~~~~s~d~~~las~~~d------------------------~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~ 114 (612)
-+.+.+++++|+|+++++.+.+ +.|.+||..+++.+...-..+-.....++++|+|
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 4579999999999999988777 4799999998874332222344578999999999
Q ss_pred CEEEEEeCCCCeeeEEEEEec-CCc--eeeee---------ccCCceEEEEEEcC-CCCEEEEEee-cCCeEEEEeCCCC
Q 007229 115 LRIVACGDGKGKSFVRAFMWD-SGT--TVGDF---------DGHSRRVLSCEFKP-TRPFRIATCG-EDFLVNFYEGPPF 180 (612)
Q Consensus 115 ~~l~~~~~~~~~~~i~i~~~~-~~~--~~~~~---------~~~~~~v~~~~~~~-~~~~~l~~~~-~d~~i~~wd~~~~ 180 (612)
+.+++...+. +|..|+ .++ .+..+ .++......++|+| ++. ++++.+ .++.|++|+ .++
T Consensus 103 ~l~v~d~~~~-----~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~-lyv~d~~~~~~I~~~~-~~g 175 (329)
T 3fvz_A 103 NYWVTDVALH-----QVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGA-VFVSDGYCNSRIVQFS-PSG 175 (329)
T ss_dssp CEEEEETTTT-----EEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCC-EEEEECSSCCEEEEEC-TTS
T ss_pred CEEEEECCCC-----EEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCe-EEEEeCCCCCeEEEEc-CCC
Confidence 9766665554 355555 233 45555 34556789999999 666 677776 689999999 566
Q ss_pred eeeecccc----------cccceEEEEECCC-CCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCE
Q 007229 181 KFKLSHRE----------HSNFVNCIRFSPD-GSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKK 249 (612)
Q Consensus 181 ~~~~~~~~----------~~~~v~~~~~s~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 249 (612)
+.+..+.. +-.....++++|+ ++++++...++.|++||..+++.+..+... .+...+..++|+| +..
T Consensus 176 ~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~-~~~~~~~~~~~~p-g~~ 253 (329)
T 3fvz_A 176 KFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHA-SFGRNVFAISYIP-GFL 253 (329)
T ss_dssp CEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCT-TTTTCEEEEEEET-TEE
T ss_pred CEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEecc-ccCCCcceeeecC-CEE
Confidence 66666532 2234899999998 666666667889999999889988877432 4567788999999 433
Q ss_pred EEEE-------eCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCcee
Q 007229 250 VLTV-------SADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLS 322 (612)
Q Consensus 250 l~~~-------~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 322 (612)
+.+. ..+..+++|+. .+++.+..+...
T Consensus 254 ~~~~g~~~v~~~~~~~v~~~~~----~~g~~~~~~~~~------------------------------------------ 287 (329)
T 3fvz_A 254 FAVNGKPYFGDQEPVQGFVMNF----SSGEIIDVFKPV------------------------------------------ 287 (329)
T ss_dssp EEEECCCCTTCSCCCCEEEEET----TTCCEEEEECCS------------------------------------------
T ss_pred EEeCCCEEeccCCCcEEEEEEc----CCCeEEEEEcCC------------------------------------------
Confidence 3332 23457888988 667666554311
Q ss_pred ecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCC
Q 007229 323 FSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGV 359 (612)
Q Consensus 323 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~ 359 (612)
.++...+..+++.+. +.++++...++.|++|++..
T Consensus 288 -~~~~~~p~~ia~~~d-G~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 288 -RKHFDMPHDIVASED-GTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp -SSCCSSEEEEEECTT-SEEEEEESSSCCEEEEEEEE
T ss_pred -CCccCCeeEEEECCC-CCEEEEECCCCEEEEEeCCc
Confidence 134455677777632 57777888888999988754
No 180
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.79 E-value=5.6e-13 Score=138.16 Aligned_cols=521 Identities=7% Similarity=0.018 Sum_probs=308.2
Q ss_pred CCceeEEEEccCCCEEEEecCCEEEEEeCCCCceeeEeccC-CC---ceEEEEECCCCCEEEEeeCcCeEEEeecCCCce
Q 007229 18 RGRGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEH-GY---PVTVARYSPNGEWIASADVSGSVRIWGTHNGFV 93 (612)
Q Consensus 18 ~~~v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~~~~h-~~---~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~ 93 (612)
...|.++...++|.+.+... +.+..||..+.+... +... .. .|.++...++|++.+... +.|..||..+++.
T Consensus 87 ~n~I~~i~~d~~g~lWigT~-~Gl~~yd~~~~~f~~-~~~~~~~~~~~i~~i~~d~~g~lwi~t~--~gl~~~~~~~~~~ 162 (795)
T 4a2l_A 87 NDISRIVKTDSQGRVWIGTR-DGLSRYDEEKDIFQN-FFYEKNGKHLQVNGIEEISPEQLLISTP--EGLIMFDIKESKF 162 (795)
T ss_dssp CSCEEEEEECTTSCEEEEES-SCEEEEETTTTEEEE-ECCEETTEECCCCEEEEEETTEEEEEET--TEEEEEETTTTEE
T ss_pred ccceeEEEECCCCCEEEEeC-CchheeCCCCCeEEe-ccccccCCCceEEEEEECCCCCEEEEEC--CceEEEECCCCEE
Confidence 35799999999998665554 558899988765443 3222 11 188999999998766553 4588999877642
Q ss_pred eeeeeeec-CCC-eEEEEECCCCCEEEEEeCCCCeeeEEEEEec--CCceeeee-ccCCceEEEEEEcCCCCEEEEEeec
Q 007229 94 LKNEFKVL-SGR-IDDLQWSPDGLRIVACGDGKGKSFVRAFMWD--SGTTVGDF-DGHSRRVLSCEFKPTRPFRIATCGE 168 (612)
Q Consensus 94 ~~~~~~~~-~~~-i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~--~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~ 168 (612)
....... ... |.++...++++..+.....+ ++.++ +++..... ..+...|.++...+++. +..++.
T Consensus 163 -~~~~~~~~~~~~i~~i~~d~~g~lwigt~~~G------l~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~--lwigt~ 233 (795)
T 4a2l_A 163 -IDDSFSTAMHKTIASTLYRQGDQIYIGTSTDG------LYTYSITQKTFEKVIPILGTKQIQAILQQSPTR--IWVATE 233 (795)
T ss_dssp -ECSSSCHHHHTCCEEEEEEETTEEEEEESSSC------EEEEETTTCCEEECC----CCCEEEEEEEETTE--EEEEEB
T ss_pred -EeccCCCCCCcceEEEEECCCCCEEEEECCCC------EEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCC--EEEEEC
Confidence 1111111 123 88888888887666433334 44454 33332211 12346788888888875 555555
Q ss_pred CCeEEEEeCCCCeeeecccc-------cccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeec----cCCcccc
Q 007229 169 DFLVNFYEGPPFKFKLSHRE-------HSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSS----EDGHHGS 237 (612)
Q Consensus 169 d~~i~~wd~~~~~~~~~~~~-------~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~----~~~~~~~ 237 (612)
++-+..||..+++....... ....|.++...++|.+. .|+.+ -|.+||..+++....... ..-....
T Consensus 234 ~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW-igt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~ 311 (795)
T 4a2l_A 234 GAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLW-IGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRS 311 (795)
T ss_dssp SSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEE-EEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSC
T ss_pred CCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEE-EEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCc
Confidence 54588999887665432211 23569999999888744 45555 589999876654332210 0123467
Q ss_pred EEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccC--ccccceeeeeeecc-CCEEEEEEcCCEEEEEEcC
Q 007229 238 IYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASST--SNAVEDMLVGCLWQ-NDHLITVSLGGIISIFSAS 314 (612)
Q Consensus 238 v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~ 314 (612)
|.++...++|. |..|+.++-|..|+. ..... ..+.... .......+.++..+ ++.+.+|+.++-+..|+..
T Consensus 312 i~~i~~D~~g~-lWigt~~~Gl~~~~~----~~~~~-~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~ 385 (795)
T 4a2l_A 312 VRSIFMDSQGG-MWLGTYFGGLNYYHP----IRNRF-KNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPI 385 (795)
T ss_dssp EEEEEECTTSC-EEEEESSSCEEEECG----GGGSS-EEECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTT
T ss_pred EEEEEEeCCcC-EEEEECCCCeEEeCC----Ccccc-eEEcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCC
Confidence 99999998887 555667778888886 33322 2222111 11122345555544 6788899999889999865
Q ss_pred CCCCCceeec-------CcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeece----ecccceEEEEee-ccE
Q 007229 315 NLDKAPLSFS-------GHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEK----KYDARIKCLAAV-EEV 382 (612)
Q Consensus 315 ~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~----~~~~~i~~~~~~-~~~ 382 (612)
.......... -....|.++.... ++..+..|+.++-+..+|..+++...... .....|.++..+ .+.
T Consensus 386 ~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~ 464 (795)
T 4a2l_A 386 TQRFTSYTLQEDESARGIGSNNIKAVYVDE-KKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGN 464 (795)
T ss_dssp TCCEEEECCC------CCSCSCEEEEEEET-TTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSC
T ss_pred CCcEEEEecCCCCcccCCCCccEEEEEEcC-CCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCC
Confidence 4321111100 1234566666553 24537778877889999988776554332 134567888773 455
Q ss_pred EEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCC
Q 007229 383 IFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDG 462 (612)
Q Consensus 383 l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 462 (612)
+..++. +.+..++..+...... .....+ . ......|.++...++|
T Consensus 465 lwigt~-~Gl~~~~~~~~~~~~~---~~~~~~------------------------------~-~~~~~~i~~i~~d~~g 509 (795)
T 4a2l_A 465 LWLGTL-SALVRFNPEQRSFTTI---EKEKDG------------------------------T-PVVSKQITTLFRDSHK 509 (795)
T ss_dssp EEEEES-SCEEEEETTTTEEEEC---CBCTTC------------------------------C-BCCCCCEEEEEECTTC
T ss_pred EEEEec-CceeEEeCCCCeEEEc---cccccc------------------------------c-ccCCceEEEEEECCCC
Confidence 666665 4577777654432100 000000 0 0012358889999988
Q ss_pred CeEEEEecCCeEEEEEccCcccccce----eeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeee-cccc-c
Q 007229 463 SEAIVGGQNGKLHIYSISGNTLTEEM----VLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLN-NMLF-H 536 (612)
Q Consensus 463 ~~l~~~~~dg~v~i~d~~~~~~~~~~----~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~-~~~~-~ 536 (612)
++.+.. . +-+..|+..+++. ... ........|.++...++|.+.+... . -+..||..+.+...- ...+ .
T Consensus 510 ~lWigt-~-~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~d~~~~~~~~~~~~~gl~ 584 (795)
T 4a2l_A 510 RLWIGG-E-EGLSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-E-GFYCFNEKDKQIKRYNTTNGLP 584 (795)
T ss_dssp CEEEEE-S-SCEEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-S-CEEEEETTTTEEEEECGGGTCS
T ss_pred CEEEEe-C-CceEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-C-CceeECCCCCcEEEeCCCCCCc
Confidence 866644 4 4588899877654 111 0112346799999999998766554 3 588899877654321 1111 1
Q ss_pred ccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeeccccc----Ce--eeEEEecCceEEEccCCCeEE
Q 007229 537 TARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLG----GV--YGVAFMDDFNVVSSGEDACIR 605 (612)
Q Consensus 537 ~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~~----~v--~~~~~~~~~~l~s~~~d~~i~ 605 (612)
...|.++...++|++.+++ .. -+..|+..+ ..+..+..+.+ .+ .++...++..|..|+.+|-++
T Consensus 585 ~~~i~~i~~d~~g~lWi~t-~~-Gl~~~~~~~---~~~~~~~~~dGl~~~~f~~~~~~~~~~G~l~~g~~~Gl~~ 654 (795)
T 4a2l_A 585 NNVVYGILEDSFGRLWLST-NR-GISCFNPET---EKFRNFTESDGLQSNQFNTASYCRTSVGQMYFGGINGITT 654 (795)
T ss_dssp CSCEEEEEECTTSCEEEEE-TT-EEEEEETTT---TEEEEECGGGTCSCSCEEEEEEEECTTSCEEEEETTEEEE
T ss_pred hhheEEEEECCCCCEEEEc-CC-ceEEEcCCC---CcEEEcCCcCCCccccCccCceeECCCCeEEEecCCceEE
Confidence 3468889998888866655 44 488888876 33444432222 22 234444455566677777443
No 181
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.79 E-value=1.2e-16 Score=145.01 Aligned_cols=234 Identities=11% Similarity=-0.003 Sum_probs=170.2
Q ss_pred CceeEEEEccCCC-EEEEec-CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeee
Q 007229 19 GRGILISGNPKTD-TILYCN-GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKN 96 (612)
Q Consensus 19 ~~v~~~~~s~d~~-~l~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~ 96 (612)
....+++|+|+|+ +++++. ++.|..||.+++ ...+..+...+.+++++|+|+++++...++.|.+||..+++. ..
T Consensus 28 ~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~-~~ 104 (296)
T 3e5z_A 28 TWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEW-ES 104 (296)
T ss_dssp SSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCE-EE
T ss_pred ccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcE-EE
Confidence 3567899999999 555554 789999999987 555677888899999999999988887778999999988763 22
Q ss_pred eeeec----CCCeEEEEECCCCCEEEEEeCCC------------CeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCC
Q 007229 97 EFKVL----SGRIDDLQWSPDGLRIVACGDGK------------GKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRP 160 (612)
Q Consensus 97 ~~~~~----~~~i~~~~~s~~~~~l~~~~~~~------------~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 160 (612)
..... ...+..++++|+|+.+++....+ ......||.++....+..+..+......++|+|+++
T Consensus 105 ~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~gi~~s~dg~ 184 (296)
T 3e5z_A 105 IADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGTLSAPIRDRVKPNGLAFLPSGN 184 (296)
T ss_dssp EECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSCEEEEECCCSSEEEEEECTTSC
T ss_pred EeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCCCCEEEeecCCCCCccEEECCCCC
Confidence 22221 23567899999999888732100 000125888875455556666777889999999999
Q ss_pred EEEEEeecCCeEEEEeCC-CCee---eecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccc
Q 007229 161 FRIATCGEDFLVNFYEGP-PFKF---KLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHG 236 (612)
Q Consensus 161 ~~l~~~~~d~~i~~wd~~-~~~~---~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 236 (612)
. +++.+.++.|.+|++. +++. ...+..+...+..++++++|++.++. ++.|.+||.+ ++.+..+. .+..
T Consensus 185 ~-lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~---~~~~ 257 (296)
T 3e5z_A 185 L-LVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVL---TPQT 257 (296)
T ss_dssp E-EEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEE---CSSC
T ss_pred E-EEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEE---CCCC
Confidence 6 5888888999999986 4443 22233345567789999999865554 7899999976 77777763 3444
Q ss_pred cEEEEEE-ecCCCEEEEEeCCCcEEEEEe
Q 007229 237 SIYAVSW-SPDGKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 237 ~v~~i~~-~~~~~~l~~~~~dg~i~iw~~ 264 (612)
+.+++| .|+++.|++++.++ +.-++.
T Consensus 258 -~~~~~f~~~d~~~L~v~t~~~-l~~~~~ 284 (296)
T 3e5z_A 258 -TSNLCFGGPEGRTLYMTVSTE-FWSIET 284 (296)
T ss_dssp -CCEEEEESTTSCEEEEEETTE-EEEEEC
T ss_pred -ceeEEEECCCCCEEEEEcCCe-EEEEEc
Confidence 889999 58888888887763 444444
No 182
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.79 E-value=7.8e-17 Score=164.87 Aligned_cols=244 Identities=8% Similarity=-0.058 Sum_probs=172.6
Q ss_pred ceeEEEEccCCCEEEEec--CC----EEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCe-----------
Q 007229 20 RGILISGNPKTDTILYCN--GR----SVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGS----------- 82 (612)
Q Consensus 20 ~v~~~~~s~d~~~l~~~~--~~----~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~----------- 82 (612)
.+..++|||||++||++. +| .|++||+++++.......+ ..+..++|||||+.|+.++.++.
T Consensus 126 ~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~ 204 (710)
T 2xdw_A 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETST 204 (710)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCC
T ss_pred EEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCcccccccccccc
Confidence 578999999999999986 22 8999999999877643322 23778999999999999887765
Q ss_pred -----EEEeecCCCce---eeeeeeecCCCeEEEEECCCCCEEEEEeCCCC--eeeEEEEEecC------Cc-eeeeecc
Q 007229 83 -----VRIWGTHNGFV---LKNEFKVLSGRIDDLQWSPDGLRIVACGDGKG--KSFVRAFMWDS------GT-TVGDFDG 145 (612)
Q Consensus 83 -----i~iwd~~~~~~---~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~--~~~i~i~~~~~------~~-~~~~~~~ 145 (612)
|.+|++.+++. +......|...+..+.|||||++|+..+.... ...+.+++.++ +. ....+..
T Consensus 205 ~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~ 284 (710)
T 2xdw_A 205 NLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLID 284 (710)
T ss_dssp CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEEC
T ss_pred CCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeC
Confidence 99999988752 11111224556889999999999998875321 11344444444 33 4666776
Q ss_pred CCceEEEEEEcCCCCEEEEEeecC---CeEEEEeCCCCee--eeccccccc--ceEEEEECCCCCeEEEEEcCCc--EEE
Q 007229 146 HSRRVLSCEFKPTRPFRIATCGED---FLVNFYEGPPFKF--KLSHREHSN--FVNCIRFSPDGSKLISVSSDRK--GLI 216 (612)
Q Consensus 146 ~~~~v~~~~~~~~~~~~l~~~~~d---~~i~~wd~~~~~~--~~~~~~~~~--~v~~~~~s~~~~~l~~~~~dg~--i~v 216 (612)
+...+.. .|+|+|+.+++.+..+ +.|.+||+.++.. ...+..|.. .+..++|++++.++++...++. |.+
T Consensus 285 ~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~ 363 (710)
T 2xdw_A 285 NFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQL 363 (710)
T ss_dssp SSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEE
T ss_pred CCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEE
Confidence 7666655 4889998655554433 4799999987642 233434433 6888999987778888888875 566
Q ss_pred EecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeC----CCcEEEEEeecCCCCCe
Q 007229 217 YDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSA----DKSAKVWEILEDGSGGR 272 (612)
Q Consensus 217 wd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~----dg~i~iw~~~~~~~~~~ 272 (612)
|++.+++....+. .+...+..+.++|+++.++.... .+++..||+ .+++
T Consensus 364 ~~~~~g~~~~~l~---~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~----~tg~ 416 (710)
T 2xdw_A 364 HDLATGALLKIFP---LEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDL----TKEE 416 (710)
T ss_dssp EETTTCCEEEEEC---CCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEET----TSSS
T ss_pred EECCCCCEEEecC---CCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEEC----CCCc
Confidence 7776787766662 45677889999999876664432 468999998 5554
No 183
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.78 E-value=6.8e-16 Score=139.25 Aligned_cols=153 Identities=14% Similarity=0.170 Sum_probs=112.9
Q ss_pred eEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeee
Q 007229 452 TVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLN 531 (612)
Q Consensus 452 ~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 531 (612)
.+..++++|+++++++...++.|++||...... .......+...+..++++|+++++++...++.|++||.... .+ .
T Consensus 122 ~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~-~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~-~~-~ 198 (286)
T 1q7f_A 122 HPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVL-HKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQ-YL-R 198 (286)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTTSCEE-EEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCC-EE-E
T ss_pred CceEEEEeCCCCEEEEECCCCEEEEEcCCCCEE-EEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCC-EE-E
Confidence 467899999999888777789999999764332 11111234456899999999998888888999999998544 32 2
Q ss_pred ccc--ccccceeEEEecCCCcEEEEeecCc-EEEEEEccCCCcceeeeeccccc--CeeeEEEe-cCceEEEccCCCeEE
Q 007229 532 NML--FHTARINCLAWSPSSTMVATGSIDT-CVIIYEIGKPASSRITIKNAHLG--GVYGVAFM-DDFNVVSSGEDACIR 605 (612)
Q Consensus 532 ~~~--~~~~~i~~~~~s~~~~~l~s~~~d~-~i~iwd~~~~~~~~~~~~~~h~~--~v~~~~~~-~~~~l~s~~~d~~i~ 605 (612)
.+. ++...+..++++|+|+++++...++ .|++|+... +.+..+..+.. .+.+++++ +++.+++ +.|+.|+
T Consensus 199 ~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g---~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~ 274 (286)
T 1q7f_A 199 QIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDG---QLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLY 274 (286)
T ss_dssp EESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTS---CEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEE
T ss_pred EEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCC---CEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEE
Confidence 232 2235788999999999888887776 999999653 55555554433 47789999 6766666 6799999
Q ss_pred EEEecc
Q 007229 606 VWRLAT 611 (612)
Q Consensus 606 ~w~~~~ 611 (612)
+|++..
T Consensus 275 v~~~~~ 280 (286)
T 1q7f_A 275 IYRYVQ 280 (286)
T ss_dssp EEECSC
T ss_pred EEEccc
Confidence 999854
No 184
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.78 E-value=6.6e-16 Score=158.00 Aligned_cols=232 Identities=10% Similarity=0.057 Sum_probs=157.0
Q ss_pred ccCCCEEEEec--C----CEEEEEeCCCCceeeEec------cCCCceEEEEECCCCCEEEEeeCcC-----eEEEeecC
Q 007229 27 NPKTDTILYCN--G----RSVLIRYLDKPLHVEFYG------EHGYPVTVARYSPNGEWIASADVSG-----SVRIWGTH 89 (612)
Q Consensus 27 s~d~~~l~~~~--~----~~i~i~~~~~~~~~~~~~------~h~~~v~~~~~s~d~~~las~~~d~-----~i~iwd~~ 89 (612)
+|||+++++.. + +.+.+.+..+++....+. +|...+..++|||||++||.++.++ .|++||+.
T Consensus 80 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~ 159 (710)
T 2xdw_A 80 FKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVD 159 (710)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETT
T ss_pred EEECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECC
Confidence 39999999876 2 255666665555443322 3555789999999999999876543 89999999
Q ss_pred CCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCC-------------eeeEEEEEecCCc----eeeeeccCCceEEE
Q 007229 90 NGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKG-------------KSFVRAFMWDSGT----TVGDFDGHSRRVLS 152 (612)
Q Consensus 90 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~-------------~~~i~i~~~~~~~----~~~~~~~~~~~v~~ 152 (612)
+++.+...+.. ..+..++|+|||+.|+.+..+.. ...+.+|...++. .+.....|...+..
T Consensus 160 tg~~~~~~~~~--~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~ 237 (710)
T 2xdw_A 160 GAKELPDVLER--VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGG 237 (710)
T ss_dssp TTEEEEEEEEE--ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEE
T ss_pred CCCCCcccccC--cccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEE
Confidence 99854333322 23678999999999999887653 1123444444443 23333446677889
Q ss_pred EEEcCCCCEEEEEeec----CCeEEEEeCCC------Ce-eeecccccccceEEEEECCCCCeEEEEEcC----CcEEEE
Q 007229 153 CEFKPTRPFRIATCGE----DFLVNFYEGPP------FK-FKLSHREHSNFVNCIRFSPDGSKLISVSSD----RKGLIY 217 (612)
Q Consensus 153 ~~~~~~~~~~l~~~~~----d~~i~~wd~~~------~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~i~vw 217 (612)
+.|+|||++++++... +..|++||+.+ +. ....+..+...+.. .|+|+|+.|+..+.. +.|.+|
T Consensus 238 ~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~ 316 (710)
T 2xdw_A 238 AELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINI 316 (710)
T ss_dssp EEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEE
T ss_pred EEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEE
Confidence 9999999975544431 56899999876 43 34445556665655 488999988877653 359999
Q ss_pred ecCCCCe--eeeeeccCCcc--ccEEEEEEecCCCEEEEEeCCCcEEEEEe
Q 007229 218 DGKSGEK--IGEFSSEDGHH--GSIYAVSWSPDGKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 218 d~~~~~~--~~~~~~~~~~~--~~v~~i~~~~~~~~l~~~~~dg~i~iw~~ 264 (612)
|+.+++. ...+. .+. ..+..++|++++.++++...++..++|-+
T Consensus 317 d~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~ 364 (710)
T 2xdw_A 317 DFTDPEESKWKVLV---PEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLH 364 (710)
T ss_dssp ETTSCCGGGCEEEE---CCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEE
T ss_pred eCCCCCcccceecc---CCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEE
Confidence 9987752 23331 332 36888999988888888888886555543
No 185
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.77 E-value=3e-12 Score=132.73 Aligned_cols=518 Identities=9% Similarity=0.042 Sum_probs=309.2
Q ss_pred CCceeEEEEccCCCEEEEecCCEEEEEeCCCCceeeEecc--------CCCceEEEEECCCCCEEEEeeCcCeEEEeecC
Q 007229 18 RGRGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGE--------HGYPVTVARYSPNGEWIASADVSGSVRIWGTH 89 (612)
Q Consensus 18 ~~~v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~~~~--------h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~ 89 (612)
...|.++.-.++|.. -.+..+-+..||-.+ .+.+.. ....|.++...++|.+.+.. .+ -+..||..
T Consensus 42 ~n~v~~I~qD~~G~l-WigT~~GL~ryDG~~---f~~~~~~~~~~~~l~~n~I~~i~~d~~g~lWigT-~~-Gl~~yd~~ 115 (795)
T 4a2l_A 42 QSTVFSIDQDKRGNM-WFATYDGVNKYDGYA---FTVYQHNEDDPNSIANDISRIVKTDSQGRVWIGT-RD-GLSRYDEE 115 (795)
T ss_dssp SSCEEEEEECTTSCE-EEEETTEEEEECSSC---EEEECCCTTCTTSCSCSCEEEEEECTTSCEEEEE-SS-CEEEEETT
T ss_pred cceeEEEEEcCCCCE-EEeecCcCcccCCCc---eEEEeCCCCCCCcccccceeEEEECCCCCEEEEe-CC-chheeCCC
Confidence 357999999999964 455555566777432 333321 24579999999999866544 44 48999988
Q ss_pred CCceeeeeeeec-CC---CeEEEEECCCCCEEEEEeCCCCeeeEEEEEec--CCceeeeecc-C-Cce-EEEEEEcCCCC
Q 007229 90 NGFVLKNEFKVL-SG---RIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD--SGTTVGDFDG-H-SRR-VLSCEFKPTRP 160 (612)
Q Consensus 90 ~~~~~~~~~~~~-~~---~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~--~~~~~~~~~~-~-~~~-v~~~~~~~~~~ 160 (612)
+.+.. .+... .. .|.++...++|...+... .+ ++.++ +++. ..+.. + ... |.++...+++.
T Consensus 116 ~~~f~--~~~~~~~~~~~~i~~i~~d~~g~lwi~t~-~g------l~~~~~~~~~~-~~~~~~~~~~~~i~~i~~d~~g~ 185 (795)
T 4a2l_A 116 KDIFQ--NFFYEKNGKHLQVNGIEEISPEQLLISTP-EG------LIMFDIKESKF-IDDSFSTAMHKTIASTLYRQGDQ 185 (795)
T ss_dssp TTEEE--EECCEETTEECCCCEEEEEETTEEEEEET-TE------EEEEETTTTEE-ECSSSCHHHHTCCEEEEEEETTE
T ss_pred CCeEE--eccccccCCCceEEEEEECCCCCEEEEEC-Cc------eEEEECCCCEE-EeccCCCCCCcceEEEEECCCCC
Confidence 76522 22211 11 188888888887666543 33 45554 3322 22211 1 122 88888888885
Q ss_pred EEEEEeecCCeEEEEeCCCCeeeecc-cccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeec----cCCcc
Q 007229 161 FRIATCGEDFLVNFYEGPPFKFKLSH-REHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSS----EDGHH 235 (612)
Q Consensus 161 ~~l~~~~~d~~i~~wd~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~----~~~~~ 235 (612)
+..++.++.+..|+..+++..... ..+...|.++...+++. |..++.++.+..||..+++....... ..-..
T Consensus 186 --lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~-lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~ 262 (795)
T 4a2l_A 186 --IYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTR-IWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISS 262 (795)
T ss_dssp --EEEEESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTE-EEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSC
T ss_pred --EEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCC-EEEEECCCCeEEEeCCCCeEEEeecCCCCccccCC
Confidence 555666555889998776654331 12346788888888776 44456555599999877654332210 00124
Q ss_pred ccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccC---ccccceeeeeeecc-CCEEEEEEcCCEEEEE
Q 007229 236 GSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASST---SNAVEDMLVGCLWQ-NDHLITVSLGGIISIF 311 (612)
Q Consensus 236 ~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~ 311 (612)
..|.++...++|.+.+ ++.+ -|.+|+. .+++.. .+.... .......+.++..+ .+.+.+|+.++-+..+
T Consensus 263 ~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~----~~~~~~-~~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~ 335 (795)
T 4a2l_A 263 NYIRSLAMDSQNRLWI-GTFN-DLNIYHE----GTDSFA-SYSSNPVENGSLSQRSVRSIFMDSQGGMWLGTYFGGLNYY 335 (795)
T ss_dssp SBEEEEEECTTSCEEE-EESS-CEEEEET----TTTEEE-EECCCTTSTTSCSSSCEEEEEECTTSCEEEEESSSCEEEE
T ss_pred CeEEEEEEcCCCCEEE-EeCC-hhheEcC----CCCeEE-EEecCCCCCCCCCCCcEEEEEEeCCcCEEEEECCCCeEEe
Confidence 5799999998887544 4455 5888987 555433 222111 11122345555544 6788899998889998
Q ss_pred EcCCCCCCceee-----cCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeecee--------cccceEEEEe
Q 007229 312 SASNLDKAPLSF-----SGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKK--------YDARIKCLAA 378 (612)
Q Consensus 312 ~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~--------~~~~i~~~~~ 378 (612)
+........... .-....|.++.... ...+..|+.++-|..|+..++........ ....|.++..
T Consensus 336 ~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~--~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~ 413 (795)
T 4a2l_A 336 HPIRNRFKNIRNIPYKNSLSDNVVSCIVEDK--DKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYV 413 (795)
T ss_dssp CGGGGSSEEECCCTTSSSCSCSSEEEEEECT--TSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEE
T ss_pred CCCcccceEEcCCCCCCCCCCCeeEEEEECC--CCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEE
Confidence 854432111100 01234566666553 45566788888899999887655443211 2456888887
Q ss_pred e-ccE-EEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEE
Q 007229 379 V-EEV-IFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTAC 456 (612)
Q Consensus 379 ~-~~~-l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 456 (612)
+ .+. +..++.++.+..++..++... ....... . .....|.++
T Consensus 414 d~~g~~lWigt~~~Gl~~~d~~~~~~~---~~~~~~~--------------------------------~-l~~~~v~~i 457 (795)
T 4a2l_A 414 DEKKSLVYIGTHAGGLSILHRNSGQVE---NFNQRNS--------------------------------Q-LVNENVYAI 457 (795)
T ss_dssp ETTTTEEEEEETTTEEEEEETTTCCEE---EECTTTS--------------------------------C-CSCSCEEEE
T ss_pred cCCCCEEEEEeCcCceeEEeCCCCcEE---EeecCCC--------------------------------C-cCCCeeEEE
Confidence 4 444 888888788888887765421 0000000 0 012358888
Q ss_pred EEccCCCeEEEEecCCeEEEEEccCcccccceee----ccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeee-
Q 007229 457 AIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVL----EKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLN- 531 (612)
Q Consensus 457 ~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~----~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~- 531 (612)
...++|++.+. +.+ .+.+|+..+++....... .-....|.++...++|++.+... +-+..||..+++....
T Consensus 458 ~~d~~g~lwig-t~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~~~~~~~ 533 (795)
T 4a2l_A 458 LPDGEGNLWLG-TLS-ALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGLDIQKAS 533 (795)
T ss_dssp EECSSSCEEEE-ESS-CEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEETTEEEECC
T ss_pred EECCCCCEEEE-ecC-ceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC--CceEEEeCCCCeEEEec
Confidence 88888875554 444 488999887765322211 11236799999999998776554 4588898877654111
Q ss_pred ---cccccccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeec---c-cccCeeeEEEe-cCceEEEccCCCe
Q 007229 532 ---NMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKN---A-HLGGVYGVAFM-DDFNVVSSGEDAC 603 (612)
Q Consensus 532 ---~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~---~-h~~~v~~~~~~-~~~~l~s~~~d~~ 603 (612)
........|.++...++|++.+.. ..| +..||..+ ..+..+. + ....|.++... ++...+++ ..|
T Consensus 534 ~~~~~~l~~~~i~~i~~d~~g~lWigT-~~G-l~~~d~~~---~~~~~~~~~~gl~~~~i~~i~~d~~g~lWi~t-~~G- 606 (795)
T 4a2l_A 534 ILPVSNVTKLFTNCIYEASNGIIWVGT-REG-FYCFNEKD---KQIKRYNTTNGLPNNVVYGILEDSFGRLWLST-NRG- 606 (795)
T ss_dssp CSCSCGGGGSCEEEEEECTTSCEEEEE-SSC-EEEEETTT---TEEEEECGGGTCSCSCEEEEEECTTSCEEEEE-TTE-
T ss_pred CCCCCCCCCCeeEEEEECCCCCEEEEe-CCC-ceeECCCC---CcEEEeCCCCCCchhheEEEEECCCCCEEEEc-CCc-
Confidence 001134568999999999866544 345 88899876 2333322 1 12357777777 55554444 444
Q ss_pred EEEEEec
Q 007229 604 IRVWRLA 610 (612)
Q Consensus 604 i~~w~~~ 610 (612)
|..|+.+
T Consensus 607 l~~~~~~ 613 (795)
T 4a2l_A 607 ISCFNPE 613 (795)
T ss_dssp EEEEETT
T ss_pred eEEEcCC
Confidence 5566654
No 186
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.77 E-value=1.2e-15 Score=135.20 Aligned_cols=238 Identities=13% Similarity=0.027 Sum_probs=178.5
Q ss_pred CCCEEEEec-CCEEEEEeCCCCceeeEeccCC-CceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeec-CCCe
Q 007229 29 KTDTILYCN-GRSVLIRYLDKPLHVEFYGEHG-YPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVL-SGRI 105 (612)
Q Consensus 29 d~~~l~~~~-~~~i~i~~~~~~~~~~~~~~h~-~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~-~~~i 105 (612)
.+++|++++ ++.|.+||.++|+.+-.+..+. ..+.+++++|+|++|++ .++.|..||. +++.+ ..+..+ ...+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilvs--~~~~V~~~d~-~G~~~-W~~~~~~~~~~ 79 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILFS--YSKGAKMITR-DGREL-WNIAAPAGCEM 79 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEEE--CBSEEEEECT-TSCEE-EEEECCTTCEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEEe--CCCCEEEECC-CCCEE-EEEcCCCCccc
Confidence 456777776 7999999999999998888776 57899999999999993 4778999999 77744 345543 3578
Q ss_pred EEEEECCCCCEEEEEeCCCCeeeEEEEEec-CCceeeeecc------CCceEEEEEEcCCCCEEEEEeecCCeEEEEeCC
Q 007229 106 DDLQWSPDGLRIVACGDGKGKSFVRAFMWD-SGTTVGDFDG------HSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGP 178 (612)
Q Consensus 106 ~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~-~~~~~~~~~~------~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 178 (612)
.++.+.|||+.+++.+.+. .+++.++ +|+.+..+.. +......+++.++|+ ++++...++.|..||.+
T Consensus 80 ~~~~~~~dG~~lv~~~~~~----~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~-~lv~~~~~~~v~~~d~~ 154 (276)
T 3no2_A 80 QTARILPDGNALVAWCGHP----STILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGN-YLVPLFATSEVREIAPN 154 (276)
T ss_dssp EEEEECTTSCEEEEEESTT----EEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSC-EEEEETTTTEEEEECTT
T ss_pred cccEECCCCCEEEEecCCC----CEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCC-EEEEecCCCEEEEECCC
Confidence 8999999999999887632 2466666 6777766642 223455667899999 58899999999999998
Q ss_pred CCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCC---ccccEEEEEEecCCCEEEEEeC
Q 007229 179 PFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDG---HHGSIYAVSWSPDGKKVLTVSA 255 (612)
Q Consensus 179 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~---~~~~v~~i~~~~~~~~l~~~~~ 255 (612)
++.+.++... ..+.++...++|+.++++..++.|..+|.++|+.+.++..... .-..+..++..++|+.+++...
T Consensus 155 -G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~ 232 (276)
T 3no2_A 155 -GQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQ 232 (276)
T ss_dssp -SCEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEEC
T ss_pred -CCEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEecc
Confidence 9988887654 4566778899999999888888999999999999988843211 1234788899999998877642
Q ss_pred C--------CcEEEEEeecCCCCCeeEeeeecc
Q 007229 256 D--------KSAKVWEILEDGSGGRVIKTFASS 280 (612)
Q Consensus 256 d--------g~i~iw~~~~~~~~~~~~~~~~~~ 280 (612)
. +..+++++. .+++.+-++...
T Consensus 233 g~~~~~~~~~~~~~~~~~---~~g~~~W~~~~~ 262 (276)
T 3no2_A 233 GHDREAGKGKHPQLVEID---SEGKVVWQLNDK 262 (276)
T ss_dssp TTCTTGGGSCCCSEEEEC---TTSBEEEEECCT
T ss_pred CccccccccCCceEEEEC---CCCCEEEEecCc
Confidence 1 234566663 356666555443
No 187
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.77 E-value=1.6e-15 Score=140.36 Aligned_cols=236 Identities=10% Similarity=0.003 Sum_probs=167.2
Q ss_pred CceeEEEEccCCCEEEEec-CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCc----CeEEEeecCCCce
Q 007229 19 GRGILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVS----GSVRIWGTHNGFV 93 (612)
Q Consensus 19 ~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d----~~i~iwd~~~~~~ 93 (612)
..+.+++|+|+|++++++. ++.|.+||.++++.......+...+.+++++|+|+++++...+ +.|.+||..+++.
T Consensus 45 ~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~ 124 (333)
T 2dg1_A 45 LQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNL 124 (333)
T ss_dssp CCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSC
T ss_pred ccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEE
Confidence 3567899999999777765 7899999999888766555677889999999999988887666 6899999988763
Q ss_pred eeeeee--ecCCCeEEEEECCCCCEEEEEeCCC-CeeeEEEEEecC-CceeeeeccCCceEEEEEEcCCCCEEEEEeecC
Q 007229 94 LKNEFK--VLSGRIDDLQWSPDGLRIVACGDGK-GKSFVRAFMWDS-GTTVGDFDGHSRRVLSCEFKPTRPFRIATCGED 169 (612)
Q Consensus 94 ~~~~~~--~~~~~i~~~~~s~~~~~l~~~~~~~-~~~~i~i~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 169 (612)
...+. .+...+..++++|+|+.+++...+. ......++.++. +..+..+..+...+..++|+|+++.++++.+.+
T Consensus 125 -~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~ 203 (333)
T 2dg1_A 125 -QDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTA 203 (333)
T ss_dssp -EEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGG
T ss_pred -EEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCC
Confidence 21222 2345789999999998877665320 000135777773 223333433444578999999998656666778
Q ss_pred CeEEEEeCCC-Ceeee--------cccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccC---Ccccc
Q 007229 170 FLVNFYEGPP-FKFKL--------SHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSED---GHHGS 237 (612)
Q Consensus 170 ~~i~~wd~~~-~~~~~--------~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~---~~~~~ 237 (612)
+.|.+||..+ +.... .+.++ ..+..++++++|++.++...++.|.+||. +++.+..+.... ++...
T Consensus 204 ~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~ 281 (333)
T 2dg1_A 204 NRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLR 281 (333)
T ss_dssp TEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCB
T ss_pred CeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccC
Confidence 8999999863 33221 11222 46788999999997777777889999998 566666663211 11126
Q ss_pred EEEEEEecCCCEEEEEeCCC
Q 007229 238 IYAVSWSPDGKKVLTVSADK 257 (612)
Q Consensus 238 v~~i~~~~~~~~l~~~~~dg 257 (612)
+.+++|+||++.|++++.++
T Consensus 282 ~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 282 STHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp CCEEEECTTSCEEEEEEECG
T ss_pred cceEEECCCCCEEEEEeCcc
Confidence 88999999987777666553
No 188
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.76 E-value=2.1e-16 Score=161.06 Aligned_cols=230 Identities=11% Similarity=0.081 Sum_probs=154.3
Q ss_pred ccCCCEEEEec--C----CEEEEEeCCCCceeeEec------cCCCceEEEEECCCCCEEE-----EeeCcCeEEEeecC
Q 007229 27 NPKTDTILYCN--G----RSVLIRYLDKPLHVEFYG------EHGYPVTVARYSPNGEWIA-----SADVSGSVRIWGTH 89 (612)
Q Consensus 27 s~d~~~l~~~~--~----~~i~i~~~~~~~~~~~~~------~h~~~v~~~~~s~d~~~la-----s~~~d~~i~iwd~~ 89 (612)
+|||+++++.. + ..|.+.+...++....+. +|...+..++|||||++|| .|+.+.+|++||+.
T Consensus 76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~ 155 (695)
T 2bkl_A 76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD 155 (695)
T ss_dssp EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC
Confidence 58999999886 2 245555665665544433 4666899999999999999 44455789999999
Q ss_pred CCcee-eeeeeecCCCeEEEEECCCCCEEEEEeCCCC----------eeeEEEEEecCCc----eeeeeccCCceEEEEE
Q 007229 90 NGFVL-KNEFKVLSGRIDDLQWSPDGLRIVACGDGKG----------KSFVRAFMWDSGT----TVGDFDGHSRRVLSCE 154 (612)
Q Consensus 90 ~~~~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~----------~~~i~i~~~~~~~----~~~~~~~~~~~v~~~~ 154 (612)
+++.+ ...+. ......++|+|||+.|+.++.+.. ...+.+|...++. .+.....|...+..+.
T Consensus 156 tg~~~~~~~~~--~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~ 233 (695)
T 2bkl_A 156 SGEWSKVDVIE--GGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSD 233 (695)
T ss_dssp TCCBCSSCCBS--CCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEE
T ss_pred CCCCcCCcccC--cccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEE
Confidence 98743 11111 111268999999999999887652 1124444444444 4444455667899999
Q ss_pred EcCCCCEEEEEeecCC----eEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEc----CCcEEEEecCCCCe--
Q 007229 155 FKPTRPFRIATCGEDF----LVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSS----DRKGLIYDGKSGEK-- 224 (612)
Q Consensus 155 ~~~~~~~~l~~~~~d~----~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----dg~i~vwd~~~~~~-- 224 (612)
|+|||++ |+..+.++ .|.+|+..+++. ..+..+...+....+ ++|+ ++..+. ++.|.+||+.+++.
T Consensus 234 ~SpDG~~-l~~~~~~~~~~~~l~~~~~~~~~~-~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~ 309 (695)
T 2bkl_A 234 LSRDGKY-LFVYILRGWSENDVYWKRPGEKDF-RLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARAS 309 (695)
T ss_dssp ECTTSCC-EEEEEEETTTEEEEEEECTTCSSC-EEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGG
T ss_pred ECCCCCE-EEEEEeCCCCceEEEEEcCCCCce-EEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccC
Confidence 9999997 44444444 677777665543 334455556666666 6676 555443 57899999987753
Q ss_pred eeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEe
Q 007229 225 IGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 225 ~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~ 264 (612)
...+. .......+..++|+ ++.++++...|+..++|.+
T Consensus 310 ~~~l~-~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~ 347 (695)
T 2bkl_A 310 WKEIV-PEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVA 347 (695)
T ss_dssp CEEEE-CCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEE
T ss_pred CeEEe-cCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEE
Confidence 22221 11224568888888 7778888889999999887
No 189
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.76 E-value=6.4e-16 Score=138.21 Aligned_cols=234 Identities=8% Similarity=-0.131 Sum_probs=165.8
Q ss_pred ceeEEEEccCCCEEE-Eec-CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeee
Q 007229 20 RGILISGNPKTDTIL-YCN-GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNE 97 (612)
Q Consensus 20 ~v~~~~~s~d~~~l~-~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~ 97 (612)
...+++++|+|++++ +.. ++.|.+||..+.........+...+.+++++++|+++++.. ++.|.+||..+... ...
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~-~~~ 102 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQ-TVL 102 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCC-EEC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceE-eee
Confidence 788999999999666 423 68999999876654433334446788999999999777665 88999999887652 211
Q ss_pred eeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeee--eccCCceEEEEEEcCCCCEEEEEeecCCeEEEE
Q 007229 98 FKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGD--FDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFY 175 (612)
Q Consensus 98 ~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~w 175 (612)
.......+..+++.|+|+.+++...++ .|+.++.+..... .......+..++++|+++ ++++...++.|.+|
T Consensus 103 ~~~~~~~p~~i~~~~~g~l~v~~~~~~-----~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~ 176 (270)
T 1rwi_B 103 PFDGLNYPEGLAVDTQGAVYVADRGNN-----RVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGN-VYVTDTDNNRVVKL 176 (270)
T ss_dssp CCCSCSSEEEEEECTTCCEEEEEGGGT-----EEEEECTTCCSCEECCCCSCCSCCCEEECTTCC-EEEEEGGGTEEEEE
T ss_pred ecCCcCCCcceEECCCCCEEEEECCCC-----EEEEEECCCceeEeeccccCCCceeEEEeCCCC-EEEEECCCCEEEEE
Confidence 112335789999999998666655444 3555564433222 223334678899999998 67777778899999
Q ss_pred eCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeC
Q 007229 176 EGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSA 255 (612)
Q Consensus 176 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~ 255 (612)
|............+...+.+++++++|.+.++...++.|.+|+.......... ..+...+.+++++++|+.+++...
T Consensus 177 ~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~---~~~~~~p~~i~~~~~g~l~v~~~~ 253 (270)
T 1rwi_B 177 EAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLP---FTGLNTPLAVAVDSDRTVYVADRG 253 (270)
T ss_dssp CTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECC---CCSCSCEEEEEECTTCCEEEEEGG
T ss_pred ecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeec---cCCCCCceeEEECCCCCEEEEECC
Confidence 98877655443334467899999999976666666889999998665433322 133357899999999998888888
Q ss_pred CCcEEEEEe
Q 007229 256 DKSAKVWEI 264 (612)
Q Consensus 256 dg~i~iw~~ 264 (612)
++.|+++++
T Consensus 254 ~~~v~~~~~ 262 (270)
T 1rwi_B 254 NDRVVKLTS 262 (270)
T ss_dssp GTEEEEECC
T ss_pred CCEEEEEcC
Confidence 999999998
No 190
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.76 E-value=6.7e-15 Score=134.84 Aligned_cols=281 Identities=10% Similarity=0.036 Sum_probs=184.7
Q ss_pred cCCeEEEEeCCCCeeeeccc------ccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEE
Q 007229 168 EDFLVNFYEGPPFKFKLSHR------EHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAV 241 (612)
Q Consensus 168 ~d~~i~~wd~~~~~~~~~~~------~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i 241 (612)
.+++|.++|..+++....+. ........+.+. +++..++...++.|.+||..+++.+..+ ........+
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i----~~~~~p~~i 89 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRI----TGFTSPRYI 89 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEE----ECCSSEEEE
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEc----CCCCCCcEE
Confidence 38899999999998776542 122346777774 3444455555799999999999998888 344678899
Q ss_pred EEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCce
Q 007229 242 SWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPL 321 (612)
Q Consensus 242 ~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 321 (612)
+++++++.+++...++.|.+||. .+++....+.....
T Consensus 90 ~~~~~g~lyv~~~~~~~v~~iD~----~t~~~~~~i~~g~~--------------------------------------- 126 (328)
T 3dsm_A 90 HFLSDEKAYVTQIWDYRIFIINP----KTYEITGYIECPDM--------------------------------------- 126 (328)
T ss_dssp EEEETTEEEEEEBSCSEEEEEET----TTTEEEEEEECTTC---------------------------------------
T ss_pred EEeCCCeEEEEECCCCeEEEEEC----CCCeEEEEEEcCCc---------------------------------------
Confidence 99999854444447899999999 77777665543210
Q ss_pred eecCcccceeEEEEEecCCcEEEEEe--cCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCC
Q 007229 322 SFSGHVKNVSTLTALKISQQTILSSS--YDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCE 399 (612)
Q Consensus 322 ~~~~~~~~v~~~~~~~~~~~~l~~~~--~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~ 399 (612)
.++......+++ + +..++.+. .++.|.++|..+++......
T Consensus 127 --~~~~~~p~~i~~-~--~~~lyv~~~~~~~~v~viD~~t~~~~~~i~-------------------------------- 169 (328)
T 3dsm_A 127 --DMESGSTEQMVQ-Y--GKYVYVNCWSYQNRILKIDTETDKVVDELT-------------------------------- 169 (328)
T ss_dssp --CTTTCBCCCEEE-E--TTEEEEEECTTCCEEEEEETTTTEEEEEEE--------------------------------
T ss_pred --cccCCCcceEEE-E--CCEEEEEcCCCCCEEEEEECCCCeEEEEEE--------------------------------
Confidence 001112233444 2 44444443 37888888887765432211
Q ss_pred CCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecC--------
Q 007229 400 GECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQN-------- 471 (612)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-------- 471 (612)
.......++++|+|+++++...+
T Consensus 170 -------------------------------------------------~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~ 200 (328)
T 3dsm_A 170 -------------------------------------------------IGIQPTSLVMDKYNKMWTITDGGYEGSPYGY 200 (328)
T ss_dssp -------------------------------------------------CSSCBCCCEECTTSEEEEEBCCBCTTCSSCB
T ss_pred -------------------------------------------------cCCCccceEEcCCCCEEEEECCCccCCcccc
Confidence 01123467889999877776654
Q ss_pred --CeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecc-cccccceeEEEecC-
Q 007229 472 --GKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNM-LFHTARINCLAWSP- 547 (612)
Q Consensus 472 --g~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~i~~~~~s~- 547 (612)
+.|.++|..++++.....+. .......++|+|++++|.++.. .|.+||..+++.....+ ..+......++++|
T Consensus 201 ~~~~v~~id~~t~~v~~~~~~~-~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~ 277 (328)
T 3dsm_A 201 EAPSLYRIDAETFTVEKQFKFK-LGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPN 277 (328)
T ss_dssp CCCEEEEEETTTTEEEEEEECC-TTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTT
T ss_pred CCceEEEEECCCCeEEEEEecC-CCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCC
Confidence 78999999988763222221 1236899999999999888765 89999999887642222 21245688999999
Q ss_pred CCcEEEEe----ecCcEEEEEEccCCCcceeeeecccccCeeeEEE
Q 007229 548 SSTMVATG----SIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAF 589 (612)
Q Consensus 548 ~~~~l~s~----~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~ 589 (612)
++.+.++. ..++.|.+||... +.+..+.. ......++|
T Consensus 278 ~g~lyva~~~~y~~~~~V~v~d~~g---~~~~~i~~-G~~P~~~~~ 319 (328)
T 3dsm_A 278 NGEVYVADAIDYQQQGIVYRYSPQG---KLIDEFYV-GIIPGAFCW 319 (328)
T ss_dssp TCCEEEEECTTSSSEEEEEEECTTC---CEEEEEEE-EESEEEEEE
T ss_pred CCeEEEEcccccccCCEEEEECCCC---CEEEEEEe-ccCcceEEE
Confidence 55555555 5788999999873 55555432 223445555
No 191
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.75 E-value=2.2e-15 Score=139.28 Aligned_cols=283 Identities=11% Similarity=-0.017 Sum_probs=185.9
Q ss_pred CceeEEEEccCCCEEEEec-CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeee
Q 007229 19 GRGILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNE 97 (612)
Q Consensus 19 ~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~ 97 (612)
..+.+++|+|++..++... ++.+..| .++....+.++...+.+++|+|+|++++++..++.|.+||..+++ ....
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~-~~~~ 81 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKE-IKRP 81 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCC-EEEE
T ss_pred cccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCc-EEEE
Confidence 3567889999988877654 6788888 345666677787888999999999988888889999999999886 3333
Q ss_pred eeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec--CCceeeeec--cCCceEEEEEEcCCCCEEEEEeec-----
Q 007229 98 FKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD--SGTTVGDFD--GHSRRVLSCEFKPTRPFRIATCGE----- 168 (612)
Q Consensus 98 ~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~--~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~----- 168 (612)
...+...+.+++|+|+|+.+++...+... .-.|+.|+ +++....+. .+...+..++++|++. ++++...
T Consensus 82 ~~~~~~~~~~i~~~~dg~l~v~~~~~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~ 159 (333)
T 2dg1_A 82 FVSHKANPAAIKIHKDGRLFVCYLGDFKS-TGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTN 159 (333)
T ss_dssp EECSSSSEEEEEECTTSCEEEEECTTSSS-CCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTB
T ss_pred eeCCCCCcceEEECCCCcEEEEeCCCCCC-CceEEEEeCCCCEEEEEEccCccCCcccceEECCCCC-EEEEeccccccC
Confidence 33566789999999999887776554000 00245555 444332332 3456799999999998 4555543
Q ss_pred -CCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEE-EcCCcEEEEecCC-CCeeeeee-----ccCCccccEEE
Q 007229 169 -DFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISV-SSDRKGLIYDGKS-GEKIGEFS-----SEDGHHGSIYA 240 (612)
Q Consensus 169 -d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~vwd~~~-~~~~~~~~-----~~~~~~~~v~~ 240 (612)
.+.|..+|..+++... +......+..++|+|+++.|+.+ +.++.|.+||+.+ +.....+. ...++ ..+..
T Consensus 160 ~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~ 237 (333)
T 2dg1_A 160 PLGGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDS 237 (333)
T ss_dssp CCEEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEE
T ss_pred CCceEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCc
Confidence 3567777766554433 22334457899999999866554 4578999999864 44332210 01112 46788
Q ss_pred EEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCcc-ccceeeeeeec--cCCEEEEEEcCC------EEEEE
Q 007229 241 VSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSN-AVEDMLVGCLW--QNDHLITVSLGG------IISIF 311 (612)
Q Consensus 241 i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~------~i~~~ 311 (612)
++++++|+++++...++.|.+||. .++.+..+...... ........+.+ +++.+++++.++ .+..+
T Consensus 238 i~~d~~G~l~v~~~~~~~v~~~d~-----~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~ 312 (333)
T 2dg1_A 238 CCIDSDDNLYVAMYGQGRVLVFNK-----RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTV 312 (333)
T ss_dssp EEEBTTCCEEEEEETTTEEEEECT-----TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEE
T ss_pred eEECCCCCEEEEEcCCCEEEEECC-----CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCccCCCCCceEEEE
Confidence 999999998877777889999986 35555555443210 00002233333 345777666653 45555
Q ss_pred EcC
Q 007229 312 SAS 314 (612)
Q Consensus 312 ~~~ 314 (612)
+..
T Consensus 313 ~~~ 315 (333)
T 2dg1_A 313 NGF 315 (333)
T ss_dssp ECS
T ss_pred ecc
Confidence 544
No 192
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.75 E-value=9.3e-16 Score=156.37 Aligned_cols=145 Identities=9% Similarity=-0.044 Sum_probs=99.3
Q ss_pred ECCCCCEEEEEeCCCCeeeEEEEEec--CCceeeee------ccCCceEEEEEEcCCCCEEEEE----eecCCeEEEEeC
Q 007229 110 WSPDGLRIVACGDGKGKSFVRAFMWD--SGTTVGDF------DGHSRRVLSCEFKPTRPFRIAT----CGEDFLVNFYEG 177 (612)
Q Consensus 110 ~s~~~~~l~~~~~~~~~~~i~i~~~~--~~~~~~~~------~~~~~~v~~~~~~~~~~~~l~~----~~~d~~i~~wd~ 177 (612)
.+|+|++++....+.......+|..+ .++....+ .+|...+..++|||||++++++ |+.+..|++||+
T Consensus 75 p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl 154 (695)
T 2bkl_A 75 PSRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDV 154 (695)
T ss_dssp CEEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEET
T ss_pred CEEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEEC
Confidence 34889998887765532223466655 33322222 2466689999999999964443 334468999999
Q ss_pred CCCeeeecccccccce--EEEEECCCCCeEEEEEcCCc-------------EEEEecCCCCee--eeeeccCCccccEEE
Q 007229 178 PPFKFKLSHREHSNFV--NCIRFSPDGSKLISVSSDRK-------------GLIYDGKSGEKI--GEFSSEDGHHGSIYA 240 (612)
Q Consensus 178 ~~~~~~~~~~~~~~~v--~~~~~s~~~~~l~~~~~dg~-------------i~vwd~~~~~~~--~~~~~~~~~~~~v~~ 240 (612)
.+++.+.. .+...+ ..++|+|||+.|+.++.|.. |++|++.+++.. ..+ ....+...+..
T Consensus 155 ~tg~~~~~--~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~-~~~~~~~~~~~ 231 (695)
T 2bkl_A 155 DSGEWSKV--DVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVH-ERTGDPTTFLQ 231 (695)
T ss_dssp TTCCBCSS--CCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEE-CCCCCTTCEEE
T ss_pred CCCCCcCC--cccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEE-ecCCCCEEEEE
Confidence 99986511 122222 68899999999999988776 999999887632 222 11245567889
Q ss_pred EEEecCCCEEEEEeCCC
Q 007229 241 VSWSPDGKKVLTVSADK 257 (612)
Q Consensus 241 i~~~~~~~~l~~~~~dg 257 (612)
+.|+|||++|+..+.++
T Consensus 232 ~~~SpDG~~l~~~~~~~ 248 (695)
T 2bkl_A 232 SDLSRDGKYLFVYILRG 248 (695)
T ss_dssp EEECTTSCCEEEEEEET
T ss_pred EEECCCCCEEEEEEeCC
Confidence 99999999998877655
No 193
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.75 E-value=1.2e-13 Score=125.66 Aligned_cols=235 Identities=11% Similarity=-0.044 Sum_probs=169.1
Q ss_pred CCceeEEEEccCCCEEEEec-CCEEEEEeCCCCceeeEe-ccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceee
Q 007229 18 RGRGILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEFY-GEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLK 95 (612)
Q Consensus 18 ~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~-~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~ 95 (612)
...+.+++++|+|++.++.. ++.|.+||.. ++..... ..+...+.+++++++|++.++...++.|..||.. ++...
T Consensus 14 ~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~ 91 (299)
T 2z2n_A 14 DTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GIIKE 91 (299)
T ss_dssp SCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE
T ss_pred CCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcEEE
Confidence 35789999999999887776 6899999998 5544322 3356789999999999988887778899999986 33211
Q ss_pred eeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec-CCceee-eeccCCceEEEEEEcCCCCEEEEEeecCCeEE
Q 007229 96 NEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD-SGTTVG-DFDGHSRRVLSCEFKPTRPFRIATCGEDFLVN 173 (612)
Q Consensus 96 ~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~-~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~ 173 (612)
..+......+..+++.++|+.+++...++ .++.++ +++... ....+...+..+++.+++. +.++...++.|.
T Consensus 92 ~~~~~~~~~~~~i~~~~~g~l~v~~~~~~-----~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~ 165 (299)
T 2z2n_A 92 YTLPNPDSAPYGITEGPNGDIWFTEMNGN-----RIGRITDDGKIREYELPNKGSYPSFITLGSDNA-LWFTENQNNAIG 165 (299)
T ss_dssp EECSSTTCCEEEEEECTTSCEEEEETTTT-----EEEEECTTCCEEEEECSSTTCCEEEEEECTTSC-EEEEETTTTEEE
T ss_pred EeCCCcCCCceeeEECCCCCEEEEecCCc-----eEEEECCCCCEEEecCCCCCCCCceEEEcCCCC-EEEEeCCCCEEE
Confidence 11222455789999999998777665444 355555 333322 2234556789999999997 577666778999
Q ss_pred EEeCCCCeeeec-ccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEE
Q 007229 174 FYEGPPFKFKLS-HREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLT 252 (612)
Q Consensus 174 ~wd~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~ 252 (612)
.||. +++.... +......+.++++.++|++.++...++.|.+||. +++... +.. ......+.+++++++|+..++
T Consensus 166 ~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~-~~~~~~~~~i~~~~~g~l~v~ 241 (299)
T 2z2n_A 166 RITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITE-FKI-PTPNARPHAITAGAGIDLWFT 241 (299)
T ss_dssp EECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EEC-SSTTCCEEEEEECSTTCEEEE
T ss_pred EEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEE-EEC-CCCCCCceeEEECCCCCEEEe
Confidence 9998 6655432 3334556889999999986666556789999998 666433 211 234567899999999986666
Q ss_pred EeCCCcEEEEEe
Q 007229 253 VSADKSAKVWEI 264 (612)
Q Consensus 253 ~~~dg~i~iw~~ 264 (612)
...++.|..|+.
T Consensus 242 ~~~~~~i~~~d~ 253 (299)
T 2z2n_A 242 EWGANKIGRLTS 253 (299)
T ss_dssp ETTTTEEEEEET
T ss_pred ccCCceEEEECC
Confidence 556788999986
No 194
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.74 E-value=2.8e-15 Score=136.06 Aligned_cols=306 Identities=12% Similarity=0.039 Sum_probs=190.9
Q ss_pred EEEcCCCCEEEEEeec----CCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEE----------cCCcEEEEe
Q 007229 153 CEFKPTRPFRIATCGE----DFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVS----------SDRKGLIYD 218 (612)
Q Consensus 153 ~~~~~~~~~~l~~~~~----d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~dg~i~vwd 218 (612)
....|+++.++++-.. ++.|.+.|..+++.+..+..-..+ . ++++|||++++++. .++.|.+||
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD 115 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFD 115 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence 4567888865555443 689999999999999888755555 4 99999999998876 367899999
Q ss_pred cCCCCeeeeeeccCC----ccccEEEEEEecCCCEEEEEeC--CCcEEEEEeecCCCCCeeEeeeeccCccccceeeeee
Q 007229 219 GKSGEKIGEFSSEDG----HHGSIYAVSWSPDGKKVLTVSA--DKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGC 292 (612)
Q Consensus 219 ~~~~~~~~~~~~~~~----~~~~v~~i~~~~~~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (612)
..+++.+..+....+ .......++|+|||++++++.. ++.|.++|+ .+++.+.++..... ..
T Consensus 116 ~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~----~t~~vv~tI~v~g~-------~~- 183 (386)
T 3sjl_D 116 PVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDL----EGKAFKRMLDVPDC-------YH- 183 (386)
T ss_dssp TTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEET----TTTEEEEEEECCSE-------EE-
T ss_pred CCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEEC----CCCcEEEEEECCCc-------ce-
Confidence 999999988853211 1124557899999999988864 689999999 89998888754320 00
Q ss_pred eccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCC-ceeeeecee---
Q 007229 293 LWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGV-GYSSKLEKK--- 368 (612)
Q Consensus 293 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~-~~~~~~~~~--- 368 (612)
..+.....+++.+.||.+.+.++.. ++.......
T Consensus 184 ------------------------------------------~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~ 221 (386)
T 3sjl_D 184 ------------------------------------------IFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFH 221 (386)
T ss_dssp ------------------------------------------EEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCS
T ss_pred ------------------------------------------eecCCCceeEEECCCCCEEEEECCCCCeEEEeecceec
Confidence 0111134444555555555555543 222110000
Q ss_pred -cccceE-EEEe--eccEEEEecCCCeEEEEecCCCCCCccceeccCCC-cceeeecCCCCcEEEEEeeccEEEeecccc
Q 007229 369 -YDARIK-CLAA--VEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQ-PLDLSLALSSPELALVSTESGVILLDSLKV 443 (612)
Q Consensus 369 -~~~~i~-~~~~--~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (612)
...++. ...+ ....++..+.++++.+.|..+.............. .....+.
T Consensus 222 ~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~----------------------- 278 (386)
T 3sjl_D 222 PEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWR----------------------- 278 (386)
T ss_dssp CTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEE-----------------------
T ss_pred cccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceecccccccccccc-----------------------
Confidence 011111 1122 12333335557888888886654221111100000 0000011
Q ss_pred eeeecccceEEEEEEccCCCeEEEEec----------CCeEEEEEccCcccccceeeccccCceEEEEEcCCCc-EEEEE
Q 007229 444 MSKIDLGFTVTACAIAPDGSEAIVGGQ----------NGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVS-MFASA 512 (612)
Q Consensus 444 ~~~~~~~~~i~~~~~s~~~~~l~~~~~----------dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~ 512 (612)
......++++|+++.+++... .+.|.++|+.+++......+. .++..|+++||++ +|++.
T Consensus 279 ------p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg---~~~~~lavs~D~~~~ly~t 349 (386)
T 3sjl_D 279 ------PGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG---HEIDSINVSQDEKPLLYAL 349 (386)
T ss_dssp ------ECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE---EEECEEEECSSSSCEEEEE
T ss_pred ------CCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC---CCcceEEECCCCCeEEEEE
Confidence 112335777899998888653 247999999999874333332 3688999999997 66554
Q ss_pred -cCCCeEEEEecCCcceeeecccccccceeEEEecCC
Q 007229 513 -DGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPS 548 (612)
Q Consensus 513 -~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~ 548 (612)
..++.|.++|..+++.+.. +. ..+..+.+.+++|
T Consensus 350 n~~~~~VsViD~~t~k~~~~-i~-~~~~p~~l~~s~d 384 (386)
T 3sjl_D 350 STGDKTLYIHDAESGEELRS-VN-QLGHGPQVITTAD 384 (386)
T ss_dssp ETTTTEEEEEETTTCCEEEE-EC-CCCSSCCEEEECC
T ss_pred cCCCCeEEEEECCCCcEEEE-ec-CCCCCceeEECCc
Confidence 5589999999999998743 33 2344556677766
No 195
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.74 E-value=1.9e-15 Score=136.96 Aligned_cols=266 Identities=14% Similarity=0.050 Sum_probs=170.1
Q ss_pred CceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEE
Q 007229 137 GTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLI 216 (612)
Q Consensus 137 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v 216 (612)
+..+..+..+.....+++|+|+++.+++++..++.|..||..++ ...+..+...+.+++++|+|+++++...++.|.+
T Consensus 17 ~~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~ 94 (296)
T 3e5z_A 17 GAEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLER 94 (296)
T ss_dssp TCCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEE
T ss_pred CCcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEE
Confidence 34445555666778899999999867888999999999999887 4556667778999999999997776666789999
Q ss_pred EecCCCCeeeeeeccCC-ccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeecc
Q 007229 217 YDGKSGEKIGEFSSEDG-HHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQ 295 (612)
Q Consensus 217 wd~~~~~~~~~~~~~~~-~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (612)
||..+++.......... ....+..++++|+|+++++....|+...+.. .. .
T Consensus 95 ~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~------~~------~---------------- 146 (296)
T 3e5z_A 95 QREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEG------YG------G---------------- 146 (296)
T ss_dssp ECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGS------SC------C----------------
T ss_pred EcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCcccccccccc------cc------c----------------
Confidence 99988876543311111 1234567889999987776432222100000 00 0
Q ss_pred CCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEE
Q 007229 296 NDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKC 375 (612)
Q Consensus 296 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~ 375 (612)
.. . ...+.|..++.. +.....
T Consensus 147 ------------------------------~~------------~------~~~~~l~~~~~~-g~~~~~---------- 167 (296)
T 3e5z_A 147 ------------------------------EM------------E------LPGRWVFRLAPD-GTLSAP---------- 167 (296)
T ss_dssp ------------------------------CC------------C------SSSCEEEEECTT-SCEEEE----------
T ss_pred ------------------------------cc------------c------CCCcEEEEECCC-CCEEEe----------
Confidence 00 0 000111111111 000000
Q ss_pred EEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEE
Q 007229 376 LAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTA 455 (612)
Q Consensus 376 ~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 455 (612)
......+..
T Consensus 168 -----------------------------------------------------------------------~~~~~~~~g 176 (296)
T 3e5z_A 168 -----------------------------------------------------------------------IRDRVKPNG 176 (296)
T ss_dssp -----------------------------------------------------------------------ECCCSSEEE
T ss_pred -----------------------------------------------------------------------ecCCCCCcc
Confidence 000012567
Q ss_pred EEEccCCCeEEEEecCCeEEEEEcc-Cccc-ccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecc
Q 007229 456 CAIAPDGSEAIVGGQNGKLHIYSIS-GNTL-TEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNM 533 (612)
Q Consensus 456 ~~~s~~~~~l~~~~~dg~v~i~d~~-~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 533 (612)
++|+|+++.+++.+.++.|++|++. ++.+ .....+..+.+.+..++++++|+++++. ++.|.+||.. ++.+ ..+
T Consensus 177 i~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~-~~~ 252 (296)
T 3e5z_A 177 LAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDEL-GRV 252 (296)
T ss_dssp EEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEE-EEE
T ss_pred EEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEE-EEE
Confidence 8999999988777778899999986 4443 1122223355667889999999977766 7899999987 5444 344
Q ss_pred cccccceeEEEe-cCCCcEEEEeecCcEEEEEEccC
Q 007229 534 LFHTARINCLAW-SPSSTMVATGSIDTCVIIYEIGK 568 (612)
Q Consensus 534 ~~~~~~i~~~~~-s~~~~~l~s~~~d~~i~iwd~~~ 568 (612)
..+.. +++++| +|+++.|++++.++ +.-++..+
T Consensus 253 ~~~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~ 286 (296)
T 3e5z_A 253 LTPQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNV 286 (296)
T ss_dssp ECSSC-CCEEEEESTTSCEEEEEETTE-EEEEECSC
T ss_pred ECCCC-ceeEEEECCCCCEEEEEcCCe-EEEEEccc
Confidence 44555 899999 58999898888764 44455554
No 196
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.73 E-value=2.2e-13 Score=123.89 Aligned_cols=284 Identities=12% Similarity=0.025 Sum_probs=188.7
Q ss_pred eccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeec-ccccccceEEEEECCCCCeEEEEEcCCcEEEEecCC
Q 007229 143 FDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLS-HREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKS 221 (612)
Q Consensus 143 ~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~ 221 (612)
+..+...+.++++.+++. +.++...++.|..||.. ++.... ...+...+.+++++++|++.++...++.|..||..
T Consensus 10 ~~~~~~~~~~i~~d~~g~-l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~- 86 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKGK-VWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK- 86 (299)
T ss_dssp CCSSSCCEEEEEECTTSC-EEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred CCCcCCCccceEECCCCC-EEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-
Confidence 345567899999999998 56666667899999988 544322 23345679999999999877766667889999976
Q ss_pred CCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEE
Q 007229 222 GEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLIT 301 (612)
Q Consensus 222 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (612)
++. ..+... .....+..+++.++++++++...++.|..||. . ++..
T Consensus 87 g~~-~~~~~~-~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~----~-g~~~--------------------------- 132 (299)
T 2z2n_A 87 GII-KEYTLP-NPDSAPYGITEGPNGDIWFTEMNGNRIGRITD----D-GKIR--------------------------- 132 (299)
T ss_dssp SCE-EEEECS-STTCCEEEEEECTTSCEEEEETTTTEEEEECT----T-CCEE---------------------------
T ss_pred CcE-EEEeCC-CcCCCceeeEECCCCCEEEEecCCceEEEECC----C-CCEE---------------------------
Confidence 432 223111 23456788888888876666555666666664 1 1000
Q ss_pred EEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeecc
Q 007229 302 VSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEE 381 (612)
Q Consensus 302 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~ 381 (612)
.+....
T Consensus 133 ----------------------------------------------------~~~~~~---------------------- 138 (299)
T 2z2n_A 133 ----------------------------------------------------EYELPN---------------------- 138 (299)
T ss_dssp ----------------------------------------------------EEECSS----------------------
T ss_pred ----------------------------------------------------EecCCC----------------------
Confidence 000000
Q ss_pred EEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccC
Q 007229 382 VIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPD 461 (612)
Q Consensus 382 ~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 461 (612)
....+..++++++
T Consensus 139 -------------------------------------------------------------------~~~~~~~i~~~~~ 151 (299)
T 2z2n_A 139 -------------------------------------------------------------------KGSYPSFITLGSD 151 (299)
T ss_dssp -------------------------------------------------------------------TTCCEEEEEECTT
T ss_pred -------------------------------------------------------------------CCCCCceEEEcCC
Confidence 0012567788888
Q ss_pred CCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeeccccccccee
Q 007229 462 GSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARIN 541 (612)
Q Consensus 462 ~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~ 541 (612)
++++++...++.|..||. +++... .....+...+..+++++++++.++...++.|.+||. +++........+...+.
T Consensus 152 g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~ 228 (299)
T 2z2n_A 152 NALWFTENQNNAIGRITE-SGDITE-FKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPH 228 (299)
T ss_dssp SCEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEE
T ss_pred CCEEEEeCCCCEEEEEcC-CCcEEE-eeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCce
Confidence 877776666788999998 555421 123334456889999999998888777889999999 66543222333456789
Q ss_pred EEEecCCCcEEEEeecCcEEEEEEccCCCcceeee-ecccccCeeeEEEecCceEEEccCCCeEEEEEecc
Q 007229 542 CLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITI-KNAHLGGVYGVAFMDDFNVVSSGEDACIRVWRLAT 611 (612)
Q Consensus 542 ~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~w~~~~ 611 (612)
+++++++|+++++...++.|..||.. + ..... +..+...+.++++ ++..|..+...+.|..++.++
T Consensus 229 ~i~~~~~g~l~v~~~~~~~i~~~d~~--g-~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~~~~l~~~~~~~ 295 (299)
T 2z2n_A 229 AITAGAGIDLWFTEWGANKIGRLTSN--N-IIEEYPIQIKSAEPHGICF-DGETIWFAMECDKIGKLTLIK 295 (299)
T ss_dssp EEEECSTTCEEEEETTTTEEEEEETT--T-EEEEEECSSSSCCEEEEEE-CSSCEEEEETTTEEEEEEEC-
T ss_pred eEEECCCCCEEEeccCCceEEEECCC--C-ceEEEeCCCCCCccceEEe-cCCCEEEEecCCcEEEEEcCc
Confidence 99999999977766677889999983 3 32222 3345567888888 555555554466777777764
No 197
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.72 E-value=2e-10 Score=118.84 Aligned_cols=560 Identities=11% Similarity=0.010 Sum_probs=319.8
Q ss_pred CCceeEEEEccCCCEEEEecCCEEEEEeCCCCceeeEec-------cCCCceEEEEECCCCCEEEEeeCcCeEEEeecCC
Q 007229 18 RGRGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYG-------EHGYPVTVARYSPNGEWIASADVSGSVRIWGTHN 90 (612)
Q Consensus 18 ~~~v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~~~-------~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~ 90 (612)
...|.++.-.++|. |-.+...-+..||-.+-+...... -....|.++...++|+.|-.++.++-+..||..+
T Consensus 18 ~n~V~~I~qD~~G~-lWigT~~GL~ryDG~~f~~~~~~~~~~~~~~l~~n~I~~i~~d~~g~~lWigt~~~Gl~~~d~~~ 96 (781)
T 3v9f_A 18 NNYVLSITQDKQGF-LWFATEEGLNKFDGTRFITYYKEEQSSSVQSITGNELNEVYTDPVQPVIWIATQRAGLNAYNYET 96 (781)
T ss_dssp CSBEEEEEECTTSC-EEEEESSCEEEECSSSEEEECCCSSCSSSCCCSCSCEEEEEECSSSSEEEEEESSSCEEEEETTT
T ss_pred cCEeEEEEECCCCC-EEEccCCcCccccCCceEEEEcCCCCCccccccccccceEEEcCCCCEEEEEeCCCCcceECCCC
Confidence 45899999999996 555554456667744311111100 0134699999999998344466665699999987
Q ss_pred Cceeeeeee------ecCCCeEEEEECC--CCCEEEEEeCCCCeeeEEEEEec--CCceeeeecc------CCceEEEEE
Q 007229 91 GFVLKNEFK------VLSGRIDDLQWSP--DGLRIVACGDGKGKSFVRAFMWD--SGTTVGDFDG------HSRRVLSCE 154 (612)
Q Consensus 91 ~~~~~~~~~------~~~~~i~~~~~s~--~~~~l~~~~~~~~~~~i~i~~~~--~~~~~~~~~~------~~~~v~~~~ 154 (612)
.+....... .....|.++.... ++...+.....+ ++.++ +++ ...+.. ....|.++.
T Consensus 97 ~~f~~~~~~~~~~~~l~~~~i~~i~~d~~~~g~lwi~t~~~g------l~~~~~~~~~-~~~~~~~~~~~l~~~~i~~i~ 169 (781)
T 3v9f_A 97 QSFSVYQYNPEDPQSLITNDVTHITSSVQAGKGLWVCTYYRG------IEYLDIATGK-FTHYNKSTVPALPSEQTWTAT 169 (781)
T ss_dssp TEEEEECCCTTCSSSCSCSCEEEEEECSSTTSEEEEEESSSC------EEEEETTTTE-EEEESTTTCTTCSCCCEEEEE
T ss_pred CeEEeeccccCCCCCcccCcceEEEecCccCCCEEEEECCCC------eeEEECCCCe-EEeeccCcccCCCccceEEEE
Confidence 653211001 0123688888887 776555332444 44444 333 223321 234688888
Q ss_pred EcCCCCEEEEEeecCCeEEEEeCCCCeeeeccc-------ccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeee
Q 007229 155 FKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHR-------EHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGE 227 (612)
Q Consensus 155 ~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~-------~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 227 (612)
..+++. +..++.++-+..||..+++...... -....|.++...+++.+.+ ++.+ -+.+||..+++....
T Consensus 170 ~d~~g~--lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwi-gt~~-Gl~~~d~~~~~~~~~ 245 (781)
T 3v9f_A 170 EAEDGK--LYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWI-GTSK-GLALFNANTETFTNF 245 (781)
T ss_dssp EEETTE--EEEEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEC-
T ss_pred ECCCCC--EEEEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEE-EeCC-cHheECCCCCcEEEE
Confidence 887875 5556666568899988765433211 1135689999888887554 5555 699999876654322
Q ss_pred eecc----CCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeee-------cc--Cccccceeeeeeec
Q 007229 228 FSSE----DGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFA-------SS--TSNAVEDMLVGCLW 294 (612)
Q Consensus 228 ~~~~----~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~-------~~--~~~~~~~~~~~~~~ 294 (612)
.... ......|.++...++|. |..++..+-|.+++. .......... .. ........+.++..
T Consensus 246 ~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~----~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~ 320 (781)
T 3v9f_A 246 HNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDL----QQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQ 320 (781)
T ss_dssp ----------CCCCEEEEEECTTSE-EEEEESSSCEEEEET----TCC---------CEEECBCSSTTSBSSSCEEEEEE
T ss_pred EcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECC----CCCeeeeeeccccccccCCCCCCCCCCCeEEEEEE
Confidence 1100 01245689999888886 445656466888887 4433221111 00 11112234455544
Q ss_pred c-CCEEEEEEcCCEEEEEEcCCCCCCceee--------cCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeee
Q 007229 295 Q-NDHLITVSLGGIISIFSASNLDKAPLSF--------SGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKL 365 (612)
Q Consensus 295 ~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~ 365 (612)
+ .+.+-+|+.++-|..++........... ......|.++.... ...+..|+.++-|..++..++.....
T Consensus 321 D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~--~g~lWigt~~~Gl~~~~~~~~~~~~~ 398 (781)
T 3v9f_A 321 DSFNNIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDG--QGKLWIGTDGGGINVFENGKRVAIYN 398 (781)
T ss_dssp CSSCCEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECT--TSCEEEEEBSSCEEEEETTEEEEECC
T ss_pred eCCCCEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcC--CCCEEEEeCCCcEEEEECCCCeEEEc
Confidence 4 6678899988888888855432111110 01234566665543 45566777777799999876554332
Q ss_pred c---eecccceEEEEee-ccEEEEecCCCeEEEEecCCCCCCccceec-cCCCcceeeecCCCCcEEEEEeeccEEEeec
Q 007229 366 E---KKYDARIKCLAAV-EEVIFTAGFDNKVWRVPLCEGECGDAEHID-VGSQPLDLSLALSSPELALVSTESGVILLDS 440 (612)
Q Consensus 366 ~---~~~~~~i~~~~~~-~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (612)
. ......|.++..+ .+.+..++.++.+..++..++......... ....+.++.. +....+.++...++..++.
T Consensus 399 ~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~--d~~g~lwigt~~Gl~~~~~ 476 (781)
T 3v9f_A 399 KENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYE--DKNKKIWIGTHAGVFVIDL 476 (781)
T ss_dssp -----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEE--CTTSEEEEEETTEEEEEES
T ss_pred cCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEE--CCCCCEEEEECCceEEEeC
Confidence 2 1144678888884 677888888788888887665432111000 1122333333 3333444455578888873
Q ss_pred cc-ceeeec-------ccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeec-cccCceEEEEEcCCCcEEEE
Q 007229 441 LK-VMSKID-------LGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLE-KHRGAITVIQYSPDVSMFAS 511 (612)
Q Consensus 441 ~~-~~~~~~-------~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~ 511 (612)
.. ....+. ....|.++...++|++.+ |+.++-+..||..+++........ -....|.++...++|.+.+.
T Consensus 477 ~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~ 555 (781)
T 3v9f_A 477 ASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWI-GTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLA 555 (781)
T ss_dssp SSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEE-EESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEE
T ss_pred CCCeEEecccCcccccccceeEEEEEcCCCCEEE-EEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEE
Confidence 22 222221 135789999999887655 454344888988776542211111 12456899999999987766
Q ss_pred EcCCCeEEEEecCCcceeeec-ccc-cccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeeccccc----C--
Q 007229 512 ADGNREAIVWDRVSKEVKLNN-MLF-HTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLG----G-- 583 (612)
Q Consensus 512 ~~~d~~i~iwd~~~~~~~~~~-~~~-~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~~----~-- 583 (612)
.. +|.+..||..+++...-. ..+ ....|.++...++|++.+++ .+| |..++..+ ..+..+....+ .
T Consensus 556 T~-~Glv~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lW~~t-~~G-l~~~~~~~---~~~~~~~~~dGl~~~~f~ 629 (781)
T 3v9f_A 556 TG-EGLVCFPSARNFDYQVFQRKEGLPNTHIRAISEDKNGNIWAST-NTG-ISCYITSK---KCFYTYDHSNNIPQGSFI 629 (781)
T ss_dssp ET-TEEEEESCTTTCCCEEECGGGTCSCCCCCEEEECSSSCEEEEC-SSC-EEEEETTT---TEEEEECGGGTCCSSCEE
T ss_pred EC-CCceEEECCCCCcEEEccccCCCCCceEEEEEECCCCCEEEEc-CCc-eEEEECCC---CceEEecccCCccccccc
Confidence 54 665588998776543111 111 12457889888888766554 556 77788776 33333322111 1
Q ss_pred eeeEEEecCceEEEccCCCeEE
Q 007229 584 VYGVAFMDDFNVVSSGEDACIR 605 (612)
Q Consensus 584 v~~~~~~~~~~l~s~~~d~~i~ 605 (612)
..++...++..|..|+.+|-++
T Consensus 630 ~~~~~~~~~G~l~~g~~~Gl~~ 651 (781)
T 3v9f_A 630 SGCVTKDHNGLIYFGSINGLCF 651 (781)
T ss_dssp EEEEEECTTSCEEEEETTEEEE
T ss_pred cCceEECCCCEEEEECCCceEE
Confidence 2234334455666777777443
No 198
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.71 E-value=7.9e-15 Score=134.46 Aligned_cols=239 Identities=10% Similarity=0.017 Sum_probs=167.4
Q ss_pred ceeEEEEccCCCEEEE--------ecCCEEEEEeCCCCceeeEec----cCCCceEEEEECCC-CCEEEEeeCcCeEEEe
Q 007229 20 RGILISGNPKTDTILY--------CNGRSVLIRYLDKPLHVEFYG----EHGYPVTVARYSPN-GEWIASADVSGSVRIW 86 (612)
Q Consensus 20 ~v~~~~~s~d~~~l~~--------~~~~~i~i~~~~~~~~~~~~~----~h~~~v~~~~~s~d-~~~las~~~d~~i~iw 86 (612)
...+++|+++|+++++ ..++.|.+||..+++...... ++...+.+++++++ |+++++.. .+.|.+|
T Consensus 19 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~~l~~~ 97 (314)
T 1pjx_A 19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-RLGLLVV 97 (314)
T ss_dssp TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-TTEEEEE
T ss_pred CccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-CCCEEEE
Confidence 5678999999988777 337899999998887654332 25577999999999 77666554 3479999
Q ss_pred ecCCCceeeee-eee----cCCCeEEEEECCCCCEEEEEeCCC----------CeeeEEEEEecCCceeeeeccCCceEE
Q 007229 87 GTHNGFVLKNE-FKV----LSGRIDDLQWSPDGLRIVACGDGK----------GKSFVRAFMWDSGTTVGDFDGHSRRVL 151 (612)
Q Consensus 87 d~~~~~~~~~~-~~~----~~~~i~~~~~s~~~~~l~~~~~~~----------~~~~i~i~~~~~~~~~~~~~~~~~~v~ 151 (612)
|.. ++ .... ... ....+..+++.++|+.+++...+. ......++.++.......+..+.....
T Consensus 98 d~~-g~-~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~ 175 (314)
T 1pjx_A 98 QTD-GT-FEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVDTAFQFPN 175 (314)
T ss_dssp ETT-SC-EEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEEEEEESSEE
T ss_pred eCC-CC-EEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCCCCEEEeccCCCCcc
Confidence 998 65 3222 111 123588999999998877765431 000124777764333333333444568
Q ss_pred EEEEc----CCCCEEEEEeecCCeEEEEeCC-CCe-----eeecccccc-cceEEEEECCCCCeEEEEEcCCcEEEEecC
Q 007229 152 SCEFK----PTRPFRIATCGEDFLVNFYEGP-PFK-----FKLSHREHS-NFVNCIRFSPDGSKLISVSSDRKGLIYDGK 220 (612)
Q Consensus 152 ~~~~~----~~~~~~l~~~~~d~~i~~wd~~-~~~-----~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~ 220 (612)
.++++ |+++.++++...++.|.+||.. +++ ....+.++. ..+..++++++|++.++...++.|.+||.+
T Consensus 176 ~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~ 255 (314)
T 1pjx_A 176 GIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPD 255 (314)
T ss_dssp EEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred eEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCC
Confidence 89999 9997556666778999999976 443 222334443 568899999999887777778999999988
Q ss_pred CCCeeeeeeccCCccccEEEEEEecCCCEEEEE-eCCCcEEEEEe
Q 007229 221 SGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTV-SADKSAKVWEI 264 (612)
Q Consensus 221 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~~dg~i~iw~~ 264 (612)
+++....+. .+...+.+++|+|+++.|+++ ..++.|..|++
T Consensus 256 ~g~~~~~~~---~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~ 297 (314)
T 1pjx_A 256 GGQPKMRIR---CPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEW 297 (314)
T ss_dssp CBSCSEEEE---CSSSCEEEEEECTTSSEEEEEETTTTEEEEEEC
T ss_pred CCcEeEEEe---CCCCCceeEEECCCCCEEEEEeCCCCeEEEEeC
Confidence 777766662 344678999999999955554 45678999987
No 199
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.71 E-value=2.4e-13 Score=125.97 Aligned_cols=278 Identities=8% Similarity=-0.021 Sum_probs=187.3
Q ss_pred EEccCCCEEEEecC--C----EEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEee----------CcCeEEEeec
Q 007229 25 SGNPKTDTILYCNG--R----SVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASAD----------VSGSVRIWGT 88 (612)
Q Consensus 25 ~~s~d~~~l~~~~~--~----~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~----------~d~~i~iwd~ 88 (612)
...|+++++.+... . .|.++|..+++.+..+.....+ .+++||||++|..+. .++.|.+||.
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~ 104 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDP 104 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEEC
Confidence 45588887766652 2 8899999999988877654444 999999999999885 3678999999
Q ss_pred CCCceeeeeeeec-------CCCeEEEEECCCCCEEEEEeCC-CCeeeEEEEEecCCceeee-eccCCceEEEEEEcCCC
Q 007229 89 HNGFVLKNEFKVL-------SGRIDDLQWSPDGLRIVACGDG-KGKSFVRAFMWDSGTTVGD-FDGHSRRVLSCEFKPTR 159 (612)
Q Consensus 89 ~~~~~~~~~~~~~-------~~~i~~~~~s~~~~~l~~~~~~-~~~~~i~i~~~~~~~~~~~-~~~~~~~v~~~~~~~~~ 159 (612)
.+.+.+. .+... ......++|+|||++|+++... .. .+.+++ ++++.+.. +.... ++.+.|++
T Consensus 105 ~t~~~~~-~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~--~v~viD-~t~~~~~~~i~~~~----~~~~~~~~ 176 (373)
T 2mad_H 105 VTFLPIA-DIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGP--AVGLVV-QGGSSDDQLLSSPT----CYHIHPGA 176 (373)
T ss_pred CCCcEEE-EEECCCccccccCCCccceEECCCCCEEEEEecCCCC--eEEEEE-CCCCEEeEEcCCCc----eEEEEeCC
Confidence 9877433 33211 1235689999999999998753 22 477888 88888777 54322 25566777
Q ss_pred CEEEEEeecCCeEEEEeCCCCeeeeccc-----ccccc-eEEEEECCCCCeEEEEEcCCcEEEEecCCCCe--eeeeecc
Q 007229 160 PFRIATCGEDFLVNFYEGPPFKFKLSHR-----EHSNF-VNCIRFSPDGSKLISVSSDRKGLIYDGKSGEK--IGEFSSE 231 (612)
Q Consensus 160 ~~~l~~~~~d~~i~~wd~~~~~~~~~~~-----~~~~~-v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~--~~~~~~~ 231 (612)
+..+++.+.||.+.++|. +++...... ....+ .....+.+++..++..+..+.+.+.|+..+.. +..+...
T Consensus 177 ~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~ 255 (373)
T 2mad_H 177 PSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDAL 255 (373)
T ss_pred CceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeec
Confidence 656788888999999999 776653221 11112 23345677766655556788999999876532 2222100
Q ss_pred C-------CccccEEEEEEecCCCEEEEEeC----------CCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeec
Q 007229 232 D-------GHHGSIYAVSWSPDGKKVLTVSA----------DKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLW 294 (612)
Q Consensus 232 ~-------~~~~~v~~i~~~~~~~~l~~~~~----------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (612)
. ........++++|+++.+++... .+.|.++|. .+.+.+..+...
T Consensus 256 ~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~----~t~~vv~~i~~g-------------- 317 (373)
T 2mad_H 256 SGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTG----LVGQTSSQISLG-------------- 317 (373)
T ss_pred CCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEEC----CCCEEEEEEECC--------------
Confidence 0 01223445788998888777643 346888888 777777666432
Q ss_pred cCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCc-EEEEEe-cCCcEEEEEcCCceeeee
Q 007229 295 QNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQ-TILSSS-YDGAIIKWIRGVGYSSKL 365 (612)
Q Consensus 295 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~-~dg~i~~wd~~~~~~~~~ 365 (612)
.....+.+++. ++ .++++. .++.|.++|..+.+....
T Consensus 318 ---------------------------------~~p~~i~~s~D-g~~~l~v~~~~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 318 ---------------------------------HDVDAISVAQD-GGPDLYALSAGTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred ---------------------------------CCcCeEEECCC-CCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence 13456777732 55 677666 589999999998877655
No 200
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.70 E-value=7.9e-14 Score=125.95 Aligned_cols=226 Identities=8% Similarity=0.042 Sum_probs=161.5
Q ss_pred eEEEEccCCCEEEEec--CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeee
Q 007229 22 ILISGNPKTDTILYCN--GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFK 99 (612)
Q Consensus 22 ~~~~~s~d~~~l~~~~--~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~ 99 (612)
-+..|+|+++.|+... ++.|..||..+++... + .....+.+++++|+|+++++. ++.|.+||..+++. .....
T Consensus 16 Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~-~~~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~~-~~~~~ 90 (297)
T 3g4e_A 16 ESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQR-V-TMDAPVSSVALRQSGGYVATI--GTKFCALNWKEQSA-VVLAT 90 (297)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE-E-ECSSCEEEEEEBTTSSEEEEE--TTEEEEEETTTTEE-EEEEE
T ss_pred cCCeEECCCCEEEEEECCCCEEEEEECCCCcEEE-E-eCCCceEEEEECCCCCEEEEE--CCeEEEEECCCCcE-EEEEe
Confidence 4789999777666664 6899999999876532 3 345789999999999966654 56899999988763 22222
Q ss_pred e----cCCCeEEEEECCCCCEEEEEeCCCC------eeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecC
Q 007229 100 V----LSGRIDDLQWSPDGLRIVACGDGKG------KSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGED 169 (612)
Q Consensus 100 ~----~~~~i~~~~~s~~~~~l~~~~~~~~------~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 169 (612)
. ....+..++++|+|+.+++...... .....++.++....+..+..+......++|+|+++.++++.+.+
T Consensus 91 ~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~ 170 (297)
T 3g4e_A 91 VDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYIDSLS 170 (297)
T ss_dssp CCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEEEEGGG
T ss_pred cCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEEEEecCCC
Confidence 1 1235789999999997775533210 01246788874433333444445678999999999767777888
Q ss_pred CeEEEEeC--CCCee-----eecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEE
Q 007229 170 FLVNFYEG--PPFKF-----KLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVS 242 (612)
Q Consensus 170 ~~i~~wd~--~~~~~-----~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~ 242 (612)
+.|..|++ .++.. ...+..+...+..+++.++|++.++....+.|..||.++++.+..+. .+...+++++
T Consensus 171 ~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~---~p~~~~t~~~ 247 (297)
T 3g4e_A 171 YSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVK---LPVDKTTSCC 247 (297)
T ss_dssp TEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEE---CSSSBEEEEE
T ss_pred CcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEE---CCCCCceEEE
Confidence 99999986 45543 22233344678899999999877776677889999999899888873 3446799999
Q ss_pred Ee-cCCCEEEEEeC
Q 007229 243 WS-PDGKKVLTVSA 255 (612)
Q Consensus 243 ~~-~~~~~l~~~~~ 255 (612)
|. |+++.|++++.
T Consensus 248 f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 248 FGGKNYSEMYVTCA 261 (297)
T ss_dssp EESGGGCEEEEEEB
T ss_pred EeCCCCCEEEEEcC
Confidence 98 88887766654
No 201
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.70 E-value=1.9e-14 Score=131.85 Aligned_cols=243 Identities=6% Similarity=-0.031 Sum_probs=172.1
Q ss_pred ceeEEEEccCCCEEEEec-CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeee
Q 007229 20 RGILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEF 98 (612)
Q Consensus 20 ~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~ 98 (612)
....+++.. ++..++.. ++.|.+||.++++.+..+. .......+++++++++.++...++.|.+||..+++ +...+
T Consensus 45 ~~~~i~~~~-~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~-~~~~i 121 (328)
T 3dsm_A 45 VAQSMVIRD-GIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYE-ITGYI 121 (328)
T ss_dssp CEEEEEEET-TEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTE-EEEEE
T ss_pred cceEEEEEC-CEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCe-EEEEE
Confidence 356677743 33334443 6899999999999988775 45678899999999665555588999999999987 33334
Q ss_pred eecC-----CCeEEEEECCCCCEEEEEeC--CCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecC--
Q 007229 99 KVLS-----GRIDDLQWSPDGLRIVACGD--GKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGED-- 169 (612)
Q Consensus 99 ~~~~-----~~i~~~~~s~~~~~l~~~~~--~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-- 169 (612)
.... .....+++ ++..|.++.. ++ .+.+++.++++.+..+... .....++++|+|+ +++++..+
T Consensus 122 ~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~---~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~-l~v~~~~~~~ 194 (328)
T 3dsm_A 122 ECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQN---RILKIDTETDKVVDELTIG-IQPTSLVMDKYNK-MWTITDGGYE 194 (328)
T ss_dssp ECTTCCTTTCBCCCEEE--ETTEEEEEECTTCC---EEEEEETTTTEEEEEEECS-SCBCCCEECTTSE-EEEEBCCBCT
T ss_pred EcCCccccCCCcceEEE--ECCEEEEEcCCCCC---EEEEEECCCCeEEEEEEcC-CCccceEEcCCCC-EEEEECCCcc
Confidence 3322 14566777 4555555543 33 4677777788887777643 3456889999998 46666554
Q ss_pred --------CeEEEEeCCCCeeeeccccc-ccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEE
Q 007229 170 --------FLVNFYEGPPFKFKLSHREH-SNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYA 240 (612)
Q Consensus 170 --------~~i~~wd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~ 240 (612)
+.|.++|..+++....+... ......++|+|++++|+++.. .|.+||..+++...... ..........
T Consensus 195 ~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~-~~~~~~~p~g 271 (328)
T 3dsm_A 195 GSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPF-LEFRDTKYYG 271 (328)
T ss_dssp TCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCS-BCCCSSCEEE
T ss_pred CCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeee-ecCCCCceEE
Confidence 79999999999877665432 236899999999999887654 89999998887642211 1112467889
Q ss_pred EEEec-CCCEEEEE----eCCCcEEEEEeecCCCCCeeEeeeecc
Q 007229 241 VSWSP-DGKKVLTV----SADKSAKVWEILEDGSGGRVIKTFASS 280 (612)
Q Consensus 241 i~~~~-~~~~l~~~----~~dg~i~iw~~~~~~~~~~~~~~~~~~ 280 (612)
++++| +++.+++. ..++.|.+||. . ++.+..+...
T Consensus 272 i~vdp~~g~lyva~~~~y~~~~~V~v~d~----~-g~~~~~i~~G 311 (328)
T 3dsm_A 272 LTVNPNNGEVYVADAIDYQQQGIVYRYSP----Q-GKLIDEFYVG 311 (328)
T ss_dssp EEECTTTCCEEEEECTTSSSEEEEEEECT----T-CCEEEEEEEE
T ss_pred EEEcCCCCeEEEEcccccccCCEEEEECC----C-CCEEEEEEec
Confidence 99999 45555554 46789999998 5 8888777643
No 202
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.69 E-value=5.9e-14 Score=144.13 Aligned_cols=231 Identities=13% Similarity=0.088 Sum_probs=150.2
Q ss_pred ccCCCEEEEec--C----CEEEEEeCC---CCceeeEe------ccCCCceEEEEECCCCCEEEEeeCc-----CeEEEe
Q 007229 27 NPKTDTILYCN--G----RSVLIRYLD---KPLHVEFY------GEHGYPVTVARYSPNGEWIASADVS-----GSVRIW 86 (612)
Q Consensus 27 s~d~~~l~~~~--~----~~i~i~~~~---~~~~~~~~------~~h~~~v~~~~~s~d~~~las~~~d-----~~i~iw 86 (612)
+|||+++++.. + ..+.+.+.. .++....+ .+|...+..++|||||++||.++.+ .+|++|
T Consensus 115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~ 194 (741)
T 1yr2_A 115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV 194 (741)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence 49999999886 2 244455554 44443322 2344578999999999999987644 469999
Q ss_pred ecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCe---------eeEEEEEec--CCc----eeeeeccCCceEE
Q 007229 87 GTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGK---------SFVRAFMWD--SGT----TVGDFDGHSRRVL 151 (612)
Q Consensus 87 d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~---------~~i~i~~~~--~~~----~~~~~~~~~~~v~ 151 (612)
|+.+++.+.. ..+...+..++|+|| +.|+.+..+... ...+|+.|+ ++. .+.....+...+.
T Consensus 195 dl~tg~~~~~--~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~ 271 (741)
T 1yr2_A 195 GVADGKPLAD--ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGH 271 (741)
T ss_dssp ETTTCCEEEE--EEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEE
T ss_pred ECCCCCCCCc--cCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEE
Confidence 9999985332 222223467899999 999988865531 012355555 333 3333344445688
Q ss_pred EEEEcCCCCEEEEEeec----CCeEEEEeCCCC--eeeecccccccceEEEEECCCCCeEEEEEcC----CcEEEEecCC
Q 007229 152 SCEFKPTRPFRIATCGE----DFLVNFYEGPPF--KFKLSHREHSNFVNCIRFSPDGSKLISVSSD----RKGLIYDGKS 221 (612)
Q Consensus 152 ~~~~~~~~~~~l~~~~~----d~~i~~wd~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~i~vwd~~~ 221 (612)
.+.|+|||++++++... ...|++||+.++ +....+..+...+.... +|+|+.|+..+.+ +.|.+||+.+
T Consensus 272 ~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~ 350 (741)
T 1yr2_A 272 GASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSG 350 (741)
T ss_dssp EEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSS
T ss_pred EEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCC
Confidence 99999999974444432 348999998876 31334444555555553 4899988888764 4599999887
Q ss_pred CC-eeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEe
Q 007229 222 GE-KIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 222 ~~-~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~ 264 (612)
+. ....+. ..+...+..++++ ++.++++...|+..++|.+
T Consensus 351 ~~~~~~~l~--~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~ 391 (741)
T 1yr2_A 351 STPRFDTVV--PESKDNLESVGIA-GNRLFASYIHDAKSQVLAF 391 (741)
T ss_dssp SSCEEEEEE--CCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEE
T ss_pred CccccEEEe--cCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEE
Confidence 52 333332 2344557778887 5677788888998888877
No 203
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.68 E-value=6.7e-13 Score=122.95 Aligned_cols=287 Identities=10% Similarity=-0.010 Sum_probs=178.9
Q ss_pred EEcCCCCEEEEEee-cCC---eEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEE----------cCCcEEEEec
Q 007229 154 EFKPTRPFRIATCG-EDF---LVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVS----------SDRKGLIYDG 219 (612)
Q Consensus 154 ~~~~~~~~~l~~~~-~d~---~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~dg~i~vwd~ 219 (612)
...|++++++++.. ... .|.++|..+++.+..+.....+ .++++|||++|+++. .++.|.+||.
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~ 104 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDP 104 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEEC
Confidence 34467775444433 233 8899999999988777654444 999999999999886 3678999999
Q ss_pred CCCCeeeeeecc-CC---ccccEEEEEEecCCCEEEEEeC--CCcEEEEEeecCCCCCeeEee-eeccCccccceeeeee
Q 007229 220 KSGEKIGEFSSE-DG---HHGSIYAVSWSPDGKKVLTVSA--DKSAKVWEILEDGSGGRVIKT-FASSTSNAVEDMLVGC 292 (612)
Q Consensus 220 ~~~~~~~~~~~~-~~---~~~~v~~i~~~~~~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 292 (612)
.+.+.+..+... .. .......++|+|||++|+++.. ++.|.++| . +++.+.. +....
T Consensus 105 ~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~----t~~~~~~~i~~~~----------- 168 (373)
T 2mad_H 105 VTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-Q----GGSSDDQLLSSPT----------- 168 (373)
T ss_pred CCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-C----CCCEEeEEcCCCc-----------
Confidence 999888877432 00 0123558999999999998874 46788887 3 3333333 22110
Q ss_pred eccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccc
Q 007229 293 LWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDAR 372 (612)
Q Consensus 293 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~ 372 (612)
++.+.+.....+++.+.||.+.++|. +++...... ...
T Consensus 169 ---------------------------------------~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~--~~~ 206 (373)
T 2mad_H 169 ---------------------------------------CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGL--VGA 206 (373)
T ss_pred ---------------------------------------eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEe--ccc
Confidence 11222222455666777888888887 554331100 000
Q ss_pred eEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccce
Q 007229 373 IKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFT 452 (612)
Q Consensus 373 i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (612)
+ + . ....-
T Consensus 207 ~---------------------~-~--------------------------------------------------~~~p~ 214 (373)
T 2mad_H 207 M---------------------L-T--------------------------------------------------AAQNL 214 (373)
T ss_pred c---------------------c-c--------------------------------------------------CCcce
Confidence 0 0 0 00000
Q ss_pred EEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeecc----------ccCceEEEEEcCCCcEEEEEcC--------
Q 007229 453 VTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEK----------HRGAITVIQYSPDVSMFASADG-------- 514 (612)
Q Consensus 453 i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~----------~~~~i~~~~~s~~~~~l~~~~~-------- 514 (612)
.....+.+++..++..+.++.+.+.|+.+........+.- .......++++||++.+..+..
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~ 294 (373)
T 2mad_H 215 LTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLH 294 (373)
T ss_pred eecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCccccc
Confidence 1223455655554444567788888886543211111110 1122445789999988777643
Q ss_pred --CCeEEEEecCCcceeeecccccccceeEEEecCCCc-EEEEee-cCcEEEEEEccCCCcceeee
Q 007229 515 --NREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSST-MVATGS-IDTCVIIYEIGKPASSRITI 576 (612)
Q Consensus 515 --d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~s~~-~d~~i~iwd~~~~~~~~~~~ 576 (612)
++.|.++|+.+++.+.... -......++|+|||+ +++++. .++.|.++|..+ . +.+..
T Consensus 295 ~~~~~V~VID~~t~~vv~~i~--~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t-~-~vv~~ 356 (373)
T 2mad_H 295 AAAKEVTSVTGLVGQTSSQIS--LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGA-G-DQDQS 356 (373)
T ss_pred CCCCeEEEEECCCCEEEEEEE--CCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCC-C-CEEee
Confidence 3589999999998874432 234688999999999 777776 589999999998 5 45544
No 204
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.68 E-value=8e-15 Score=150.57 Aligned_cols=242 Identities=11% Similarity=-0.017 Sum_probs=164.0
Q ss_pred ceeEEEEccCCCEEEEecC------CEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCe-----------
Q 007229 20 RGILISGNPKTDTILYCNG------RSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGS----------- 82 (612)
Q Consensus 20 ~v~~~~~s~d~~~l~~~~~------~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~----------- 82 (612)
.+..++|||||++||++.+ ..|++||+++++.+.. ..+...+..++|||| +.|+.++.++.
T Consensus 164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~ 241 (741)
T 1yr2_A 164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNY 241 (741)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-EEEEEESCCCEESTT-SEEEEEECCCC--------CCC
T ss_pred EEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-cCCCceeccEEEECC-CEEEEEEecCcccccccccCCC
Confidence 6789999999999999862 3799999999987653 223333468999999 99998876554
Q ss_pred ---EEEeecCCCce---eeeeeeecCCCeEEEEECCCCCEEEEEeCCC--CeeeEEEEEecCCc-e-eeeeccCCceEEE
Q 007229 83 ---VRIWGTHNGFV---LKNEFKVLSGRIDDLQWSPDGLRIVACGDGK--GKSFVRAFMWDSGT-T-VGDFDGHSRRVLS 152 (612)
Q Consensus 83 ---i~iwd~~~~~~---~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~--~~~~i~i~~~~~~~-~-~~~~~~~~~~v~~ 152 (612)
|.+|++.++.. +......+...+..+.|||||++|+..+.+. ....+.+++.+++. . ...+..+...+..
T Consensus 242 ~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~ 321 (741)
T 1yr2_A 242 NQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWD 321 (741)
T ss_dssp CCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEE
T ss_pred CCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEE
Confidence 89999987652 2111122233588999999999999887543 22234455554552 2 5556555555555
Q ss_pred EEEcCCCCEEEEEeec----CCeEEEEeCCCC--eeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecC-CCCee
Q 007229 153 CEFKPTRPFRIATCGE----DFLVNFYEGPPF--KFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGK-SGEKI 225 (612)
Q Consensus 153 ~~~~~~~~~~l~~~~~----d~~i~~wd~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~-~~~~~ 225 (612)
.. +|+++. |+..+. ++.|.+||+.++ +....+..+...+..++++ ++.++++...|+..++|.+. +++..
T Consensus 322 ~~-~~dg~~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~ 398 (741)
T 1yr2_A 322 FV-DGVGDQ-LWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPA 398 (741)
T ss_dssp EE-EEETTE-EEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEE
T ss_pred EE-eccCCE-EEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCce
Confidence 43 488885 544443 456999998874 3344445555667778887 56677888889887777654 45555
Q ss_pred eeeeccCCccccEEEEEEecCCCEEEEEe----CCCcEEEEEeecCCCCCe
Q 007229 226 GEFSSEDGHHGSIYAVSWSPDGKKVLTVS----ADKSAKVWEILEDGSGGR 272 (612)
Q Consensus 226 ~~~~~~~~~~~~v~~i~~~~~~~~l~~~~----~dg~i~iw~~~~~~~~~~ 272 (612)
..+. ......+..+.++|+++.++... ..+++.+||+ .+++
T Consensus 399 ~~l~--~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~----~tg~ 443 (741)
T 1yr2_A 399 GAVS--LPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDP----ATAK 443 (741)
T ss_dssp EECB--CSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEET----TTTE
T ss_pred eecc--CCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEEC----CCCc
Confidence 5552 12456788999999988666432 2378999998 6655
No 205
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.68 E-value=2e-14 Score=127.24 Aligned_cols=194 Identities=7% Similarity=0.068 Sum_probs=150.4
Q ss_pred CCCCEEEEeeCcCeEEEeecCCCceeeeeeeecC-CCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCC
Q 007229 69 PNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLS-GRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHS 147 (612)
Q Consensus 69 ~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~ 147 (612)
..+++|++++.++.|.+||.++++.+ -.+..+. ..+.++.++|+|+.|++ . +. .+..++. +++.+..+..+.
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~tG~~~-w~~~~~~~~~~~~~~~~pdG~ilvs-~-~~---~V~~~d~-~G~~~W~~~~~~ 75 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDTKEIV-WEYPLEKGWECNSVAATKAGEILFS-Y-SK---GAKMITR-DGRELWNIAAPA 75 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTTTEEE-EEEECCTTCCCCEEEECTTSCEEEE-C-BS---EEEEECT-TSCEEEEEECCT
T ss_pred CCCcEEEeeCCCCEEEEEECCCCeEE-EEeCCCccCCCcCeEECCCCCEEEe-C-CC---CEEEECC-CCCEEEEEcCCC
Confidence 35678999999999999999999844 4555555 57899999999998883 3 22 2344444 789999988753
Q ss_pred -ceEEEEEEcCCCCEEEEEeec-CCeEEEEeCCCCeeeeccc------ccccceEEEEECCCCCeEEEEEcCCcEEEEec
Q 007229 148 -RRVLSCEFKPTRPFRIATCGE-DFLVNFYEGPPFKFKLSHR------EHSNFVNCIRFSPDGSKLISVSSDRKGLIYDG 219 (612)
Q Consensus 148 -~~v~~~~~~~~~~~~l~~~~~-d~~i~~wd~~~~~~~~~~~------~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~ 219 (612)
..+.++.+.|+|+. +++.+. ++.|..+|. +++.+..+. .+......+++.++|+++++...++.|..||.
T Consensus 76 ~~~~~~~~~~~dG~~-lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~ 153 (276)
T 3no2_A 76 GCEMQTARILPDGNA-LVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAP 153 (276)
T ss_dssp TCEEEEEEECTTSCE-EEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECT
T ss_pred CccccccEECCCCCE-EEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECC
Confidence 57899999999994 666665 778888885 666665543 22234566788999999999999999999998
Q ss_pred CCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeecc
Q 007229 220 KSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASS 280 (612)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~ 280 (612)
+ |+.+..+. ....+.++.+.++++.++++..++.|..+|. .+++.+..+...
T Consensus 154 ~-G~~~w~~~----~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~----~tG~~~w~~~~~ 205 (276)
T 3no2_A 154 N-GQLLNSVK----LSGTPFSSAFLDNGDCLVACGDAHCFVQLNL----ESNRIVRRVNAN 205 (276)
T ss_dssp T-SCEEEEEE----CSSCCCEEEECTTSCEEEECBTTSEEEEECT----TTCCEEEEEEGG
T ss_pred C-CCEEEEEE----CCCCccceeEcCCCCEEEEeCCCCeEEEEeC----cCCcEEEEecCC
Confidence 7 99998883 2345567788899999988888888999998 779998888643
No 206
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.67 E-value=4.8e-10 Score=116.00 Aligned_cols=520 Identities=11% Similarity=0.017 Sum_probs=302.5
Q ss_pred CceeEEEEccCCC-EEEEecCCEEEEEeCCCCceeeEecc-------CCCceEEEEECC--CCCEEEEeeCcCeEEEeec
Q 007229 19 GRGILISGNPKTD-TILYCNGRSVLIRYLDKPLHVEFYGE-------HGYPVTVARYSP--NGEWIASADVSGSVRIWGT 88 (612)
Q Consensus 19 ~~v~~~~~s~d~~-~l~~~~~~~i~i~~~~~~~~~~~~~~-------h~~~v~~~~~s~--d~~~las~~~d~~i~iwd~ 88 (612)
..|.++...++|+ +-+...++.+..||..+.+....... ....|.++...+ +|.+.+ ++.++-|..+|.
T Consensus 66 n~I~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~f~~~~~~~~~~~~l~~~~i~~i~~d~~~~g~lwi-~t~~~gl~~~~~ 144 (781)
T 3v9f_A 66 NELNEVYTDPVQPVIWIATQRAGLNAYNYETQSFSVYQYNPEDPQSLITNDVTHITSSVQAGKGLWV-CTYYRGIEYLDI 144 (781)
T ss_dssp SCEEEEEECSSSSEEEEEESSSCEEEEETTTTEEEEECCCTTCSSSCSCSCEEEEEECSSTTSEEEE-EESSSCEEEEET
T ss_pred cccceEEEcCCCCEEEEEeCCCCcceECCCCCeEEeeccccCCCCCcccCcceEEEecCccCCCEEE-EECCCCeeEEEC
Confidence 4689999999998 44443454799999987665443111 123688999888 776554 443455888998
Q ss_pred CCCceeeeeee------ecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec--CCceeeeec--------cCCceEEE
Q 007229 89 HNGFVLKNEFK------VLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD--SGTTVGDFD--------GHSRRVLS 152 (612)
Q Consensus 89 ~~~~~~~~~~~------~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~--~~~~~~~~~--------~~~~~v~~ 152 (612)
.+++. . .+. .....|.++...++|...+.....+ ++.++ +++ ...+. -....|.+
T Consensus 145 ~~~~~-~-~~~~~~~~~l~~~~i~~i~~d~~g~lwigt~~~G------l~~~~~~~~~-~~~~~~~~~~~~~l~~~~i~~ 215 (781)
T 3v9f_A 145 ATGKF-T-HYNKSTVPALPSEQTWTATEAEDGKLYIGHVEGG------LSILSLNDKS-VKHFVHDPQNPNSLPGNDVRC 215 (781)
T ss_dssp TTTEE-E-EESTTTCTTCSCCCEEEEEEEETTEEEEEETTTE------EEEEETTTTE-EEEECC--------CCSSEEE
T ss_pred CCCeE-E-eeccCcccCCCccceEEEEECCCCCEEEEecCCC------eEEEcCCCCc-eEeeecCCCCcccCCCCceeE
Confidence 77652 2 121 1134578888888886665433323 44554 332 22221 11356899
Q ss_pred EEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccc-------cccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCee
Q 007229 153 CEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHRE-------HSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKI 225 (612)
Q Consensus 153 ~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~-------~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~ 225 (612)
+...+++. |..|+.+ -+.+||..+++....... ....|.++...++|. |..|+..+-|.++|..+++..
T Consensus 216 i~~d~~g~--lwigt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~ 291 (781)
T 3v9f_A 216 IYKDTNGN--IWIGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFL 291 (781)
T ss_dssp EEECTTCC--EEEEETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---
T ss_pred EEEcCCCC--EEEEeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeee
Confidence 99988887 4445555 588999877665432211 235699999888886 555676567899998766533
Q ss_pred eeee-------c----cCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeecc-----Cccccceee
Q 007229 226 GEFS-------S----EDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASS-----TSNAVEDML 289 (612)
Q Consensus 226 ~~~~-------~----~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 289 (612)
.... . .......|.++...++|. |-.|+.++-|..++. ..... ..+... ........+
T Consensus 292 ~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~----~~~~~-~~~~~~~~~~~~~~l~~~~v 365 (781)
T 3v9f_A 292 LPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISN----APPTF-HTWSYSPTQMNESSLSNKVV 365 (781)
T ss_dssp ------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECS----SCCSC-EEEC----CCCSSCCSSSCE
T ss_pred eeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCC----CCCcc-eeeccCccccccCCCCCcce
Confidence 2110 0 112345799999998886 556666777888886 43322 222211 111122345
Q ss_pred eeeecc-CCEEEEEEcCCEEEEEEcCCCCCCcee--ecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeec
Q 007229 290 VGCLWQ-NDHLITVSLGGIISIFSASNLDKAPLS--FSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLE 366 (612)
Q Consensus 290 ~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~ 366 (612)
.++..+ ++.+.+|+.++-+..++.......... .......|.++.... ...+..|+.++-+..++..+++.....
T Consensus 366 ~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~--~g~lWigt~~~Gl~~~~~~~~~~~~~~ 443 (781)
T 3v9f_A 366 SSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDS--EGNLWFGTYLGNISYYNTRLKKFQIIE 443 (781)
T ss_dssp EEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECT--TSCEEEEETTEEEEEECSSSCEEEECC
T ss_pred EEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECC--CCCEEEEeccCCEEEEcCCCCcEEEec
Confidence 555544 578889998888888885432111000 012234566666543 445566777777999998877655443
Q ss_pred e--ecccceEEEEee-ccEEEEecCCCeEEEEecCCCCCCccceec----cCCCcceeeecCCCCcEEEEEeeccEEEee
Q 007229 367 K--KYDARIKCLAAV-EEVIFTAGFDNKVWRVPLCEGECGDAEHID----VGSQPLDLSLALSSPELALVSTESGVILLD 439 (612)
Q Consensus 367 ~--~~~~~i~~~~~~-~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (612)
. .....|.++..+ .+.+..++. +.+..++..+.......... ....+..+...+++ .+.+.+...++..++
T Consensus 444 ~~~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g-~lWigt~~~Gl~~~~ 521 (781)
T 3v9f_A 444 LEKNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEG-RFWIGTFGGGVGIYT 521 (781)
T ss_dssp STTTCCCCEEEEEECTTSEEEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTC-CEEEEESSSCEEEEC
T ss_pred cCCCCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCC-CEEEEEcCCCEEEEe
Confidence 2 145678888884 566777776 66888887765543211111 01233344444433 344444447888887
Q ss_pred cc-cceeeec-----ccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeecc-ccCceEEEEEcCCCcEEEEE
Q 007229 440 SL-KVMSKID-----LGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEK-HRGAITVIQYSPDVSMFASA 512 (612)
Q Consensus 440 ~~-~~~~~~~-----~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~ 512 (612)
.. .....+. ....|.++...++|.+.+. +.+|.+..||..+++........+ ....|.++...++|.+.+++
T Consensus 522 ~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~-T~~Glv~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lW~~t 600 (781)
T 3v9f_A 522 PDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLA-TGEGLVCFPSARNFDYQVFQRKEGLPNTHIRAISEDKNGNIWAST 600 (781)
T ss_dssp TTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEE-ETTEEEEESCTTTCCCEEECGGGTCSCCCCCEEEECSSSCEEEEC
T ss_pred CCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEE-ECCCceEEECCCCCcEEEccccCCCCCceEEEEEECCCCCEEEEc
Confidence 32 2233322 2346889999998876554 446655889987776522111111 12468889999888776664
Q ss_pred cCCCeEEEEecCCcceeeec-ccc---cccceeEEEecCCCcEEEEeecCcEEEEEEcc
Q 007229 513 DGNREAIVWDRVSKEVKLNN-MLF---HTARINCLAWSPSSTMVATGSIDTCVIIYEIG 567 (612)
Q Consensus 513 ~~d~~i~iwd~~~~~~~~~~-~~~---~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~ 567 (612)
.+| |..++..+.+...-. ..+ ..-...++...++|++++ |+.+| +..++.+
T Consensus 601 -~~G-l~~~~~~~~~~~~~~~~dGl~~~~f~~~~~~~~~~G~l~~-g~~~G-l~~f~p~ 655 (781)
T 3v9f_A 601 -NTG-ISCYITSKKCFYTYDHSNNIPQGSFISGCVTKDHNGLIYF-GSING-LCFFNPD 655 (781)
T ss_dssp -SSC-EEEEETTTTEEEEECGGGTCCSSCEEEEEEEECTTSCEEE-EETTE-EEEECSC
T ss_pred -CCc-eEEEECCCCceEEecccCCccccccccCceEECCCCEEEE-ECCCc-eEEEChh
Confidence 444 777888766543111 111 111234677778887554 66677 5566654
No 207
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.67 E-value=6.8e-14 Score=129.66 Aligned_cols=286 Identities=12% Similarity=0.036 Sum_probs=189.5
Q ss_pred CCCCEEEEEeecC----CeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEE----------cCCcEEEEecCCC
Q 007229 157 PTRPFRIATCGED----FLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVS----------SDRKGLIYDGKSG 222 (612)
Q Consensus 157 ~~~~~~l~~~~~d----~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~dg~i~vwd~~~~ 222 (612)
|+++.++++...+ +.|.++|..+++.+.++..-..+ .++++||+++|+++. .++.|.++|..++
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~ 159 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF 159 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence 4556555555544 79999999999999888755555 899999999998876 3678999999999
Q ss_pred Ceeeeeecc-CC---ccccEEEEEEecCCCEEEEEeC--CCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccC
Q 007229 223 EKIGEFSSE-DG---HHGSIYAVSWSPDGKKVLTVSA--DKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQN 296 (612)
Q Consensus 223 ~~~~~~~~~-~~---~~~~v~~i~~~~~~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (612)
+.+..+... .. .......++|+|||++++++.. ++.|.+.|+ .+.+.+..+....
T Consensus 160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~----~t~kvv~~I~v~g--------------- 220 (426)
T 3c75_H 160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDL----EGKTFDRMLDVPD--------------- 220 (426)
T ss_dssp CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEET----TTTEEEEEEECCS---------------
T ss_pred cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEEC----CCCeEEEEEEcCC---------------
Confidence 998887432 00 1123457899999999998874 578999999 8888887765431
Q ss_pred CEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEE
Q 007229 297 DHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCL 376 (612)
Q Consensus 297 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~ 376 (612)
. ....+.....+++.+.||.+.+.+...++......
T Consensus 221 ---------------------------------~--~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~--------- 256 (426)
T 3c75_H 221 ---------------------------------C--YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNT--------- 256 (426)
T ss_dssp ---------------------------------E--EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEEC---------
T ss_pred ---------------------------------c--eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEee---------
Confidence 0 01111114555666667777666663332211000
Q ss_pred EeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEE
Q 007229 377 AAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTAC 456 (612)
Q Consensus 377 ~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 456 (612)
..++..... ....+
T Consensus 257 ----------------~~~~v~~~p--------------------------------------------------~~~~~ 270 (426)
T 3c75_H 257 ----------------EVFHTEDEL--------------------------------------------------LINHP 270 (426)
T ss_dssp ----------------CCCSCTTSC--------------------------------------------------BCSCC
T ss_pred ----------------eeeccCCCc--------------------------------------------------eeeEe
Confidence 011111000 01124
Q ss_pred EEccCCCeEEEEecCCeEEEEEccCcccccceeec----------cccCceEEEEEcCCCcEEEEEcC----------CC
Q 007229 457 AIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLE----------KHRGAITVIQYSPDVSMFASADG----------NR 516 (612)
Q Consensus 457 ~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~----------~~~~~i~~~~~s~~~~~l~~~~~----------d~ 516 (612)
.++++++.++.....+.|.+.|..+........+. ........++++|+++++.+... ++
T Consensus 271 ~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~ 350 (426)
T 3c75_H 271 AFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASR 350 (426)
T ss_dssp EECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEE
T ss_pred eecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCC
Confidence 67888888777778889999998765431111110 01122234689999887776642 35
Q ss_pred eEEEEecCCcceeeecccccccceeEEEecCCCc-EEEEee-cCcEEEEEEccCCCcceeeee
Q 007229 517 EAIVWDRVSKEVKLNNMLFHTARINCLAWSPSST-MVATGS-IDTCVIIYEIGKPASSRITIK 577 (612)
Q Consensus 517 ~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~s~~-~d~~i~iwd~~~~~~~~~~~~ 577 (612)
.|.+.|+.+.+.+..... ......++|+|||+ +|+++. .++.|.++|..+ . +.+..+
T Consensus 351 ~VsVID~~T~kvv~~I~v--g~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t-~-kvv~tI 409 (426)
T 3c75_H 351 FVVVLNAETGERINKIEL--GHEIDSINVSQDAEPLLYALSAGTQTLHIYDAAT-G-EELRSV 409 (426)
T ss_dssp EEEEEETTTCCEEEEEEE--EEEECEEEECCSSSCEEEEEETTTTEEEEEETTT-C-CEEEEE
T ss_pred EEEEEECCCCeEEEEEEC--CCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCC-C-CEEEEe
Confidence 799999999998754332 33588999999999 888777 589999999998 5 555554
No 208
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.67 E-value=3e-13 Score=122.82 Aligned_cols=196 Identities=12% Similarity=0.056 Sum_probs=132.1
Q ss_pred EEECCCCCEEEEEeCCC--CeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEee---------cCCeEEEEe
Q 007229 108 LQWSPDGLRIVACGDGK--GKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCG---------EDFLVNFYE 176 (612)
Q Consensus 108 ~~~s~~~~~l~~~~~~~--~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---------~d~~i~~wd 176 (612)
....|+++.+.+..... ....+.+.+.++++.+..++.-..+ . ++++||++++.++.. .++.|.+||
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD 115 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFD 115 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence 45679999988886631 0125677777789999988866666 4 999999997555442 467899999
Q ss_pred CCCCeeeeccccc-------ccceEEEEECCCCCeEEEEEc--CCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCC
Q 007229 177 GPPFKFKLSHREH-------SNFVNCIRFSPDGSKLISVSS--DRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDG 247 (612)
Q Consensus 177 ~~~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~ 247 (612)
..+++.+..+.-. ......++|+|||++|+++.. ++.|.++|+.+++.+.++... +. ...+....
T Consensus 116 ~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~----g~--~~~~P~g~ 189 (386)
T 3sjl_D 116 PVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVP----DC--YHIFPTAP 189 (386)
T ss_dssp TTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECC----SE--EEEEEEET
T ss_pred CCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECC----Cc--ceeecCCC
Confidence 9999988776422 124567899999999998874 689999999999999988432 11 22333345
Q ss_pred CEEEEEeCCCcEEEEEeecCCCC-CeeEeeeeccCccccceeee-eeec--cCCEEEEEEcCCEEEEEEcCCC
Q 007229 248 KKVLTVSADKSAKVWEILEDGSG-GRVIKTFASSTSNAVEDMLV-GCLW--QNDHLITVSLGGIISIFSASNL 316 (612)
Q Consensus 248 ~~l~~~~~dg~i~iw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~i~~~~~~~~ 316 (612)
+.+++.+.||.+.+.++ .. ++...... .........+. ...+ .++.++..+.+|.+.++|....
T Consensus 190 ~~~~~~~~DG~~~~v~~----~~~g~v~~~~~-~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~ 257 (386)
T 3sjl_D 190 DTFFMHCRDGSLAKVAF----GTEGTPEITHT-EVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSG 257 (386)
T ss_dssp TEEEEEETTSCEEEEEC----CSSSCCEEEEC-CCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTS
T ss_pred ceeEEECCCCCEEEEEC----CCCCeEEEeec-ceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCC
Confidence 66778888999999988 43 33322111 11001111111 1122 3556777888999999997654
No 209
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.67 E-value=1.9e-13 Score=125.01 Aligned_cols=225 Identities=13% Similarity=0.043 Sum_probs=155.0
Q ss_pred eeEEEEccCCCEEEEec--CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeee
Q 007229 21 GILISGNPKTDTILYCN--GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEF 98 (612)
Q Consensus 21 v~~~~~s~d~~~l~~~~--~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~ 98 (612)
..+.+|+|+++.+++.. ++.|..||.++++... +. +...+.+++++|+|+++++. .+ .|.+||..+++. . .+
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~-~-~~ 124 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTV-HA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVL-T-LH 124 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCE-E-EE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-EE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcE-E-EE
Confidence 45789999877666654 6899999999876543 32 45689999999999988765 34 499999988763 2 22
Q ss_pred eec-----CCCeEEEEECCCCCEEEEEeCCC-CeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeE
Q 007229 99 KVL-----SGRIDDLQWSPDGLRIVACGDGK-GKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLV 172 (612)
Q Consensus 99 ~~~-----~~~i~~~~~s~~~~~l~~~~~~~-~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i 172 (612)
... ...+..++++|+|+.+++..... ......++.+++++ +..+..+......++|+|+++.+.++.+.++.|
T Consensus 125 ~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~~g~-~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I 203 (326)
T 2ghs_A 125 AELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGK-VTKLFADISIPNSICFSPDGTTGYFVDTKVNRL 203 (326)
T ss_dssp ECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTE-EEEEEEEESSEEEEEECTTSCEEEEEETTTCEE
T ss_pred eeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEeCCc-EEEeeCCCcccCCeEEcCCCCEEEEEECCCCEE
Confidence 211 23588999999999776554210 00013566666433 333333334567899999998656666778899
Q ss_pred EEEeCC--CC-ee-----eecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEe
Q 007229 173 NFYEGP--PF-KF-----KLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWS 244 (612)
Q Consensus 173 ~~wd~~--~~-~~-----~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~ 244 (612)
.+|++. ++ .. ...+......+..+++.++|++.++...++.|.+||. +++.+..+. .+...+.+++|.
T Consensus 204 ~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~---~~~~~~~~~af~ 279 (326)
T 2ghs_A 204 MRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYE---VPGKQTTCPAFI 279 (326)
T ss_dssp EEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEE---CSCSBEEEEEEE
T ss_pred EEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEE---CCCCCcEEEEEe
Confidence 999975 55 32 2223333456788999999987776666788999998 677766663 344579999998
Q ss_pred -cCCCEEEEEeCC
Q 007229 245 -PDGKKVLTVSAD 256 (612)
Q Consensus 245 -~~~~~l~~~~~d 256 (612)
++++.|++++..
T Consensus 280 g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 280 GPDASRLLVTSAR 292 (326)
T ss_dssp STTSCEEEEEEBC
T ss_pred cCCCCEEEEEecC
Confidence 888777665544
No 210
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.64 E-value=8.7e-12 Score=113.30 Aligned_cols=282 Identities=12% Similarity=-0.005 Sum_probs=185.1
Q ss_pred ccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeee-cccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCC
Q 007229 144 DGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKL-SHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSG 222 (612)
Q Consensus 144 ~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 222 (612)
......+.++++.+++. +.++...++.|..||.. ++... .+......+.++++.+++++.++...++.|..||.. +
T Consensus 16 ~~~~~~p~~i~~d~~g~-l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g 92 (300)
T 2qc5_A 16 SIPDSGPYGITSSEDGK-VWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-G 92 (300)
T ss_dssp SSTTCCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred CCCCCCcceeeECCCCC-EEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-C
Confidence 34556889999999998 57766678999999988 55433 233334678999999999877765557889999977 5
Q ss_pred CeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEE
Q 007229 223 EKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITV 302 (612)
Q Consensus 223 ~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (612)
+.. .+... .....+..+++.++++++++...++.|..++. . ++.. .+.
T Consensus 93 ~~~-~~~~~-~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~----~-g~~~-~~~------------------------ 140 (300)
T 2qc5_A 93 GFT-EYPLP-QPDSGPYGITEGLNGDIWFTQLNGDRIGKLTA----D-GTIY-EYD------------------------ 140 (300)
T ss_dssp CEE-EEECS-STTCCEEEEEECSTTCEEEEETTTTEEEEECT----T-SCEE-EEE------------------------
T ss_pred CeE-EecCC-CCCCCCccceECCCCCEEEEccCCCeEEEECC----C-CCEE-Ecc------------------------
Confidence 543 23211 23356788888888876666555666666665 1 1111 000
Q ss_pred EcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccE
Q 007229 303 SLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEV 382 (612)
Q Consensus 303 ~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~ 382 (612)
...
T Consensus 141 ------------------------------------------------------~~~----------------------- 143 (300)
T 2qc5_A 141 ------------------------------------------------------LPN----------------------- 143 (300)
T ss_dssp ------------------------------------------------------CSS-----------------------
T ss_pred ------------------------------------------------------CCC-----------------------
Confidence 000
Q ss_pred EEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCC
Q 007229 383 IFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDG 462 (612)
Q Consensus 383 l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 462 (612)
....+..+++.+++
T Consensus 144 ------------------------------------------------------------------~~~~~~~i~~d~~g 157 (300)
T 2qc5_A 144 ------------------------------------------------------------------KGSYPAFITLGSDN 157 (300)
T ss_dssp ------------------------------------------------------------------TTCCEEEEEECTTS
T ss_pred ------------------------------------------------------------------CCCCceeEEECCCC
Confidence 00125667788888
Q ss_pred CeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccccccceeE
Q 007229 463 SEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINC 542 (612)
Q Consensus 463 ~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~ 542 (612)
++.++...++.|..++. +++.. ......+...+..+++.+++.+.++....+.|.+||. +++........+...+.+
T Consensus 158 ~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~ 234 (300)
T 2qc5_A 158 ALWFTENQNNSIGRITN-TGKLE-EYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHA 234 (300)
T ss_dssp SEEEEETTTTEEEEECT-TCCEE-EEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEE
T ss_pred CEEEEecCCCeEEEECC-CCcEE-EeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceE
Confidence 86665555778888888 44432 1222334456889999999988888777789999998 444432223334566889
Q ss_pred EEecCCCcEEEEeecCcEEEEEEccCCCcceeeeecccccCeeeEEEe-cCceEEEccCCCeEEEEEec
Q 007229 543 LAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFM-DDFNVVSSGEDACIRVWRLA 610 (612)
Q Consensus 543 ~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~~~d~~i~~w~~~ 610 (612)
+++.++|++.++...++.|..|+... . .....+......+.++++. ++..+++.. . .|..++.+
T Consensus 235 i~~d~~g~l~v~~~~~~~i~~~~~~g-~-~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p~ 299 (300)
T 2qc5_A 235 ITAGKNSEIWFTEWGANQIGRITNDN-T-IQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNLN 299 (300)
T ss_dssp EEECSTTCEEEEETTTTEEEEECTTS-C-EEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEEC
T ss_pred EEECCCCCEEEeccCCCeEEEECCCC-c-EEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCCC
Confidence 99999998777766678999999843 2 2222233345568899998 666555554 4 66666654
No 211
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.64 E-value=2.5e-13 Score=125.93 Aligned_cols=278 Identities=10% Similarity=0.044 Sum_probs=185.4
Q ss_pred ccCCCEEEEecC------CEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEee----------CcCeEEEeecCC
Q 007229 27 NPKTDTILYCNG------RSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASAD----------VSGSVRIWGTHN 90 (612)
Q Consensus 27 s~d~~~l~~~~~------~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~----------~d~~i~iwd~~~ 90 (612)
.|+++.+.+... +.|.++|..+++.+..+.--..+ .+++||||++|..+. .++.|.++|..+
T Consensus 81 ~~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t 158 (426)
T 3c75_H 81 APDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVT 158 (426)
T ss_dssp CCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT
T ss_pred CCCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCC
Confidence 367777777653 79999999999999888755555 899999999888775 467899999999
Q ss_pred Cceeeeeeeec-------CCCeEEEEECCCCCEEEEEeCC-CCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEE
Q 007229 91 GFVLKNEFKVL-------SGRIDDLQWSPDGLRIVACGDG-KGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFR 162 (612)
Q Consensus 91 ~~~~~~~~~~~-------~~~i~~~~~s~~~~~l~~~~~~-~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 162 (612)
.+.+ ..+... ......++|+|||++|+++... .. .+.+.+..+++.+..+.--.. ....|+++..
T Consensus 159 ~~vv-~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~--~VsVID~~t~kvv~~I~v~g~----~~~~p~g~~~ 231 (426)
T 3c75_H 159 FLPI-ADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAP--AVGVVDLEGKTFDRMLDVPDC----YHIFPASPTV 231 (426)
T ss_dssp CCEE-EEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSC--EEEEEETTTTEEEEEEECCSE----EEEEEEETTE
T ss_pred CcEE-EEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCC--eEEEEECCCCeEEEEEEcCCc----eeeccCCCcE
Confidence 9843 344321 2345688999999999998753 22 467777778888887764221 2334444335
Q ss_pred EEEeecCCeEEEEeCCCCeeee----cccccccc-eEEEEECCCCCeEEEEEcCCcEEEEecCCCCee--eeeeccC---
Q 007229 163 IATCGEDFLVNFYEGPPFKFKL----SHREHSNF-VNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKI--GEFSSED--- 232 (612)
Q Consensus 163 l~~~~~d~~i~~wd~~~~~~~~----~~~~~~~~-v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~--~~~~~~~--- 232 (612)
+++.+.||.+.+.+..+++... .+.....+ ...+.|.+++..++.....+.+.+.|...+... ..+....
T Consensus 232 ~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~ 311 (426)
T 3c75_H 232 FYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAE 311 (426)
T ss_dssp EEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTT
T ss_pred EEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccc
Confidence 6666667777777765554331 11111111 123578999988888888899999998655422 1111000
Q ss_pred ----CccccEEEEEEecCCCEEEEEeC----------CCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCE
Q 007229 233 ----GHHGSIYAVSWSPDGKKVLTVSA----------DKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDH 298 (612)
Q Consensus 233 ----~~~~~v~~i~~~~~~~~l~~~~~----------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (612)
........++++|+++++++... ++.|.++|. .+.+.+..+....
T Consensus 312 i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~----~T~kvv~~I~vg~----------------- 370 (426)
T 3c75_H 312 RADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNA----ETGERINKIELGH----------------- 370 (426)
T ss_dssp GGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEET----TTCCEEEEEEEEE-----------------
T ss_pred cccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEEC----CCCeEEEEEECCC-----------------
Confidence 01111223689999887777642 346999998 8888887765431
Q ss_pred EEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCc-EEEEEe-cCCcEEEEEcCCceeeee
Q 007229 299 LITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQ-TILSSS-YDGAIIKWIRGVGYSSKL 365 (612)
Q Consensus 299 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~-~dg~i~~wd~~~~~~~~~ 365 (612)
....+.+++. ++ .+++.. .++.|.++|..+.+....
T Consensus 371 ------------------------------~P~gia~spD-g~~~lyv~n~~s~~VsVID~~t~kvv~t 408 (426)
T 3c75_H 371 ------------------------------EIDSINVSQD-AEPLLYALSAGTQTLHIYDAATGEELRS 408 (426)
T ss_dssp ------------------------------EECEEEECCS-SSCEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred ------------------------------CcCeEEEccC-CCEEEEEEcCCCCeEEEEECCCCCEEEE
Confidence 3456667633 55 666666 589999999998887655
No 212
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.64 E-value=6.6e-12 Score=114.09 Aligned_cols=274 Identities=9% Similarity=-0.053 Sum_probs=182.7
Q ss_pred CCceeEEEEccCCCEEEEec-CCEEEEEeCCCCceeeE-eccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceee
Q 007229 18 RGRGILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEF-YGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLK 95 (612)
Q Consensus 18 ~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~-~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~ 95 (612)
...+.+++++++|++.++.. ++.|.+||.. ++.... +..+...+.++++.++|++.++...++.|..||.. ++...
T Consensus 19 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~ 96 (300)
T 2qc5_A 19 DSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTE 96 (300)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE
T ss_pred CCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEE
Confidence 35788999999999877775 6899999988 554432 23344679999999999988887778899999988 54322
Q ss_pred eeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecC-Cceee-eeccCCceEEEEEEcCCCCEEEEEeecCCeEE
Q 007229 96 NEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDS-GTTVG-DFDGHSRRVLSCEFKPTRPFRIATCGEDFLVN 173 (612)
Q Consensus 96 ~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~-~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~ 173 (612)
.........+..+++.++|+.+++...++ .++.++. ++... .+......+..+++.++++ +.++...++.|.
T Consensus 97 ~~~~~~~~~~~~i~~~~~g~l~v~~~~~~-----~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~i~ 170 (300)
T 2qc5_A 97 YPLPQPDSGPYGITEGLNGDIWFTQLNGD-----RIGKLTADGTIYEYDLPNKGSYPAFITLGSDNA-LWFTENQNNSIG 170 (300)
T ss_dssp EECSSTTCCEEEEEECSTTCEEEEETTTT-----EEEEECTTSCEEEEECSSTTCCEEEEEECTTSS-EEEEETTTTEEE
T ss_pred ecCCCCCCCCccceECCCCCEEEEccCCC-----eEEEECCCCCEEEccCCCCCCCceeEEECCCCC-EEEEecCCCeEE
Confidence 22222346789999999998777665444 2555552 43332 2333456789999999998 577766678999
Q ss_pred EEeCCCCeeee-cccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEE
Q 007229 174 FYEGPPFKFKL-SHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLT 252 (612)
Q Consensus 174 ~wd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~ 252 (612)
.+|. +++... ....+...+..+++.++|++.++....+.|.+||. +++..... . ......+.+++++++|+..++
T Consensus 171 ~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~-~-~~~~~~~~~i~~d~~g~l~v~ 246 (300)
T 2qc5_A 171 RITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYD-I-PTPNARPHAITAGKNSEIWFT 246 (300)
T ss_dssp EECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEE-C-SSTTCCEEEEEECSTTCEEEE
T ss_pred EECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEE-C-CCCCCCceEEEECCCCCEEEe
Confidence 9998 554433 22334457899999999976665555678999998 55544322 1 134566889999999986666
Q ss_pred EeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeecc-CCEEEEEEcCCEEEEEEc
Q 007229 253 VSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQ-NDHLITVSLGGIISIFSA 313 (612)
Q Consensus 253 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~ 313 (612)
...++.|..|+. . ++.. .+..... .....++... ++.+.+++.. .|..++.
T Consensus 247 ~~~~~~i~~~~~----~-g~~~-~~~~~~~---~~~~~~i~~~~~g~l~v~~~~-~i~~~~p 298 (300)
T 2qc5_A 247 EWGANQIGRITN----D-NTIQ-EYQLQTE---NAEPHGITFGKDGSVWFALKC-KIGKLNL 298 (300)
T ss_dssp ETTTTEEEEECT----T-SCEE-EEECCST---TCCCCCEEECTTSCEEEECSS-EEEEEEE
T ss_pred ccCCCeEEEECC----C-CcEE-EEECCcc---CCccceeEeCCCCCEEEEccC-ceEEeCC
Confidence 656688999986 2 3222 2222210 1123333333 4556666654 6666663
No 213
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.63 E-value=2.8e-13 Score=120.93 Aligned_cols=240 Identities=7% Similarity=-0.083 Sum_probs=161.3
Q ss_pred ceEEEEECCCCCEEE-EeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec-CCc
Q 007229 61 PVTVARYSPNGEWIA-SADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD-SGT 138 (612)
Q Consensus 61 ~v~~~~~s~d~~~la-s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~-~~~ 138 (612)
...+++++++|++++ +...++.|.+||..+... ......+...+..++++++|+.+++.. ++ .|+.++ .+.
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~-----~i~~~d~~~~ 97 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGT-TVLPFNGLYQPQGLAVDGAGTVYVTDF-NN-----RVVTLAAGSN 97 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC------EECCCCSCCSCCCEEECTTCCEEEEET-TT-----EEEEECTTCS
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCccc-ceEeeCCcCCcceeEECCCCCEEEEcC-CC-----EEEEEeCCCc
Confidence 778999999999777 556788999999876542 211123335788999999999666554 33 355555 233
Q ss_pred eeeeec-cCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEE
Q 007229 139 TVGDFD-GHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIY 217 (612)
Q Consensus 139 ~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw 217 (612)
....+. .....+..++++|++. ++++...++.|.+|+..+.............+.+++++++|+++++...++.|.+|
T Consensus 98 ~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~ 176 (270)
T 1rwi_B 98 NQTVLPFDGLNYPEGLAVDTQGA-VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKL 176 (270)
T ss_dssp CCEECCCCSCSSEEEEEECTTCC-EEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEE
T ss_pred eEeeeecCCcCCCcceEECCCCC-EEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEE
Confidence 333333 2336789999999998 67777778899999876654433332333467889999999866666667899999
Q ss_pred ecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCC
Q 007229 218 DGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQND 297 (612)
Q Consensus 218 d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (612)
|.......... ......+..++++++|..+++...++.|.+|+. ....... .
T Consensus 177 ~~~~~~~~~~~---~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~----~~~~~~~-~-------------------- 228 (270)
T 1rwi_B 177 EAESNNQVVLP---FTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLA----GSTTSTV-L-------------------- 228 (270)
T ss_dssp CTTTCCEEECC---CSSCCSEEEEEECTTCCEEEEETTTSCEEEECT----TCSCCEE-C--------------------
T ss_pred ecCCCceEeec---ccCCCCceEEEECCCCCEEEEECCCCcEEEEcC----CCCccee-e--------------------
Confidence 98776654332 133367889999999977776666889999987 3222111 0
Q ss_pred EEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCcee
Q 007229 298 HLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYS 362 (612)
Q Consensus 298 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~ 362 (612)
...+...+.++++.+ ++.++++...++.|++++....+.
T Consensus 229 -------------------------~~~~~~~p~~i~~~~-~g~l~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 229 -------------------------PFTGLNTPLAVAVDS-DRTVYVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp -------------------------CCCSCSCEEEEEECT-TCCEEEEEGGGTEEEEECCCGGGS
T ss_pred -------------------------ccCCCCCceeEEECC-CCCEEEEECCCCEEEEEcCCCccc
Confidence 001224566777763 267888888899999998876543
No 214
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.63 E-value=4.5e-13 Score=126.09 Aligned_cols=238 Identities=10% Similarity=-0.034 Sum_probs=161.9
Q ss_pred CceeEEEEccCCCEEEEec-CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcC--eEEEeecCCCceee
Q 007229 19 GRGILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSG--SVRIWGTHNGFVLK 95 (612)
Q Consensus 19 ~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~--~i~iwd~~~~~~~~ 95 (612)
.....++++|+|+++++.. ++.|++||.++++....... ..... ++|+|+++.|++++.++ .|.+|+...+...
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~- 207 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAP- 207 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCE-
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCcee-
Confidence 4788999999999666665 58999999998877665554 33334 99999999999888766 7889988776532
Q ss_pred eee----eecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeee----eccCCceE-E-EEEEcCCCCEEEEE
Q 007229 96 NEF----KVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGD----FDGHSRRV-L-SCEFKPTRPFRIAT 165 (612)
Q Consensus 96 ~~~----~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~----~~~~~~~v-~-~~~~~~~~~~~l~~ 165 (612)
..+ ......+.+++++|++..|+++..++ .+..++.+++..... ..++...- . .++|+|++..++++
T Consensus 208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~---~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~ 284 (409)
T 3hrp_A 208 TRIGQLGSTFSGKIGAVALDETEEWLYFVDSNK---NFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMS 284 (409)
T ss_dssp EEEEECCTTSCSCCCBCEECTTSSEEEEECTTC---EEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEE
T ss_pred EEeeeccchhcCCcEEEEEeCCCCeEEEEECCC---cEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEE
Confidence 122 11446788999999655666654433 344444444442221 22222222 3 99999976667888
Q ss_pred eecCCeEEEEeCCCCeeeeccccc---------------ccceEEEEECCCCCeEEEEE-cCCcEEEEecCCCCeeeeee
Q 007229 166 CGEDFLVNFYEGPPFKFKLSHREH---------------SNFVNCIRFSPDGSKLISVS-SDRKGLIYDGKSGEKIGEFS 229 (612)
Q Consensus 166 ~~~d~~i~~wd~~~~~~~~~~~~~---------------~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~ 229 (612)
...++.|+.|+.... ...+.++ -.....++++|+|+++++-. .++.|+.|++.+++......
T Consensus 285 d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g 362 (409)
T 3hrp_A 285 DQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAG 362 (409)
T ss_dssp ETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEE
T ss_pred eCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeC
Confidence 888899999997643 2222222 13478999999999666666 78899999987776543331
Q ss_pred cc--C---------CccccEEEEEEecCCCEEEEEeCCCcEEEEEe
Q 007229 230 SE--D---------GHHGSIYAVSWSPDGKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 230 ~~--~---------~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~ 264 (612)
.. . ..-.....+++++++.++++-..++.|+.+++
T Consensus 363 ~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 363 QVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp CTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred CCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 10 0 01245889999999887777777788887765
No 215
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.60 E-value=1.7e-13 Score=139.24 Aligned_cols=240 Identities=8% Similarity=-0.073 Sum_probs=161.8
Q ss_pred CCCceeEEEEccCCCEEEEec--C----CEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcC---------
Q 007229 17 ERGRGILISGNPKTDTILYCN--G----RSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSG--------- 81 (612)
Q Consensus 17 ~~~~v~~~~~s~d~~~l~~~~--~----~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~--------- 81 (612)
+...+..++|||||++||++. + ..|++||+++++.+.. ..+......++|+ ||+.|+.++.+.
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~ 204 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-PLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSAR 204 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-EEEEEESCCCEEE-TTTEEEEEESSCCC-------
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-ccCCceeccEEEe-CCCEEEEEEecCccccccccc
Confidence 344688899999999999875 1 4899999999986553 1111123578999 999999888774
Q ss_pred ----eEEEeecCCCce---eeeeeee-cCCCeEEEEECCCCCEEEEEeCCCCe-eeEEEEEecCCc-eeeeeccCCceEE
Q 007229 82 ----SVRIWGTHNGFV---LKNEFKV-LSGRIDDLQWSPDGLRIVACGDGKGK-SFVRAFMWDSGT-TVGDFDGHSRRVL 151 (612)
Q Consensus 82 ----~i~iwd~~~~~~---~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~~~~~-~~i~i~~~~~~~-~~~~~~~~~~~v~ 151 (612)
.|.+|++.+... +...... |......+.|||||++|+........ ..+.+++.+++. ....+..+.....
T Consensus 205 ~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~ 284 (693)
T 3iuj_A 205 TDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADV 284 (693)
T ss_dssp CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCE
T ss_pred CCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceE
Confidence 399999987653 2222222 44567889999999998766543221 134444444442 4556666666655
Q ss_pred EEEEcCCCCEEEEEeecC---CeEEEEeCCCCee--eecccccccceEEEEECCCCCeEEEEEcCC---cEEEEecCCCC
Q 007229 152 SCEFKPTRPFRIATCGED---FLVNFYEGPPFKF--KLSHREHSNFVNCIRFSPDGSKLISVSSDR---KGLIYDGKSGE 223 (612)
Q Consensus 152 ~~~~~~~~~~~l~~~~~d---~~i~~wd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~vwd~~~~~ 223 (612)
.. +++++..+++....+ +.|..+|+.++.. ...+..|...+. .|++++++|+....++ .|++|++..+
T Consensus 285 ~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~- 360 (693)
T 3iuj_A 285 SL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK- 360 (693)
T ss_dssp EE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSC-
T ss_pred EE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCC-
Confidence 55 667777556665544 6899999987654 234455665555 8999999888776544 6889998744
Q ss_pred eeeeeeccCCccccEEEEEEecCCCEEEEEeCC----CcEEEEEe
Q 007229 224 KIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSAD----KSAKVWEI 264 (612)
Q Consensus 224 ~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d----g~i~iw~~ 264 (612)
....+. ......+..+.++++++.++....+ +.+..||+
T Consensus 361 ~~~~l~--~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~ 403 (693)
T 3iuj_A 361 RVREVA--LPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEP 403 (693)
T ss_dssp EEEEEC--CSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECT
T ss_pred eeEEee--cCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEEC
Confidence 444442 1344567788888888877766554 78888887
No 216
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.59 E-value=1.2e-13 Score=125.99 Aligned_cols=175 Identities=8% Similarity=-0.010 Sum_probs=136.8
Q ss_pred CCceeEEEEccCCCEEEEecCCEEEEEeCCCCc----------eeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEee
Q 007229 18 RGRGILISGNPKTDTILYCNGRSVLIRYLDKPL----------HVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWG 87 (612)
Q Consensus 18 ~~~v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~----------~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd 87 (612)
..+++.++++++..++++++...+++|+++..+ .......+.. |++++| |+++|+++ .++.|++||
T Consensus 37 ~~~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 37 FASLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp SSCCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred cccccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 347999999999999999998888889876433 1112334677 999999 99999999 889999999
Q ss_pred cCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEee
Q 007229 88 THNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCG 167 (612)
Q Consensus 88 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 167 (612)
+.+.. .......|...+.++.+.+.. ++++..++ .+.+|++..+.... +...|++++|+|+| ++.|.
T Consensus 113 v~sl~-~~~~~~~~~~~v~~i~~~~p~--~av~~~dG---~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG---~~vg~ 179 (388)
T 1xip_A 113 LEELS-EFRTVTSFEKPVFQLKNVNNT--LVILNSVN---DLSALDLRTKSTKQ----LAQNVTSFDVTNSQ---LAVLL 179 (388)
T ss_dssp SSSTT-CEEEEEECSSCEEEEEECSSE--EEEEETTS---EEEEEETTTCCEEE----EEESEEEEEECSSE---EEEEE
T ss_pred chhhh-ccCccceeecceeeEEecCCC--EEEEECCC---CEEEEEccCCcccc----ccCCceEEEEcCCc---eEEEE
Confidence 98876 344667788889998887764 77777777 45666666555543 45689999999998 57788
Q ss_pred cCCeEEEEeCCCCee--eecc------c---ccccceEEEEECCCCCeEEEEE
Q 007229 168 EDFLVNFYEGPPFKF--KLSH------R---EHSNFVNCIRFSPDGSKLISVS 209 (612)
Q Consensus 168 ~d~~i~~wd~~~~~~--~~~~------~---~~~~~v~~~~~s~~~~~l~~~~ 209 (612)
.||++++|+...++. ..++ . +|...|.++.|.+++.++++-.
T Consensus 180 ~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 180 KDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp TTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred cCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 999999999887775 4444 2 3778899999999998887543
No 217
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.56 E-value=2.2e-13 Score=124.36 Aligned_cols=177 Identities=10% Similarity=-0.024 Sum_probs=136.2
Q ss_pred ceEEEEECCCCCEEEEeeCcCeEEEeecCCCc---------eeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEE
Q 007229 61 PVTVARYSPNGEWIASADVSGSVRIWGTHNGF---------VLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRA 131 (612)
Q Consensus 61 ~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~---------~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i 131 (612)
+++.+++++...++++|+.+ .+++|++++.. ........+.. |+.++| |+++|+++ .++ .+.+
T Consensus 39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~---~l~v 110 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRN---ALYS 110 (388)
T ss_dssp CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESS---EEEE
T ss_pred cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCC---cEEE
Confidence 68999999999999999988 56669876543 11112334666 999999 99999998 444 4677
Q ss_pred EEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcC
Q 007229 132 FMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSD 211 (612)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 211 (612)
|+..+.........|...+.++.+.+.. +++++.||.+.+||++++.... +...|+|++|||+| ++.|..|
T Consensus 111 ~dv~sl~~~~~~~~~~~~v~~i~~~~p~---~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~d 181 (388)
T 1xip_A 111 LDLEELSEFRTVTSFEKPVFQLKNVNNT---LVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKD 181 (388)
T ss_dssp EESSSTTCEEEEEECSSCEEEEEECSSE---EEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETT
T ss_pred EEchhhhccCccceeecceeeEEecCCC---EEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcC
Confidence 7766555555667778888888877652 8888999999999999887653 45689999999999 6789999
Q ss_pred CcEEEEecCCCCe--eeeeecc------CCccccEEEEEEecCCCEEEEEe
Q 007229 212 RKGLIYDGKSGEK--IGEFSSE------DGHHGSIYAVSWSPDGKKVLTVS 254 (612)
Q Consensus 212 g~i~vwd~~~~~~--~~~~~~~------~~~~~~v~~i~~~~~~~~l~~~~ 254 (612)
|++++|+...++. ..++..+ .+|...|.+++|.+++.++++-.
T Consensus 182 g~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 182 RSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp SCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred CcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 9999999887774 4444211 13678899999999998887643
No 218
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=99.55 E-value=2e-08 Score=99.18 Aligned_cols=527 Identities=10% Similarity=-0.010 Sum_probs=267.3
Q ss_pred CCEEEEecCCEEEEEeCCCCc-eeeEeccCCCceEEEEECCCCCEEEEee-CcCeEEEeecCCCceeeeeeeecCCCeEE
Q 007229 30 TDTILYCNGRSVLIRYLDKPL-HVEFYGEHGYPVTVARYSPNGEWIASAD-VSGSVRIWGTHNGFVLKNEFKVLSGRIDD 107 (612)
Q Consensus 30 ~~~l~~~~~~~i~i~~~~~~~-~~~~~~~h~~~v~~~~~s~d~~~las~~-~d~~i~iwd~~~~~~~~~~~~~~~~~i~~ 107 (612)
..+|+.+..+.|+..++.... ....+...-.....++|++.+..|..+. ..+.|..+++.........+...-.....
T Consensus 9 ~~~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~G 88 (619)
T 3s94_A 9 APLLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDG 88 (619)
T ss_dssp -CCEEEECSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEE
T ss_pred CceEEEeccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCe
Confidence 346788888999999998653 2222333455678999999776666554 46789999987653212223323357889
Q ss_pred EEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEee-cCCeEEEEeCCCCeeeecc
Q 007229 108 LQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCG-EDFLVNFYEGPPFKFKLSH 186 (612)
Q Consensus 108 ~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~~i~~wd~~~~~~~~~~ 186 (612)
+++.+.+..|..+..... .|.+...+.......+.........+++.|.+.+++++-- ..+.|...++.........
T Consensus 89 lAvD~~~~~ly~~d~~~~--~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~ 166 (619)
T 3s94_A 89 LACDWLGEKLYWTDSETN--RIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIII 166 (619)
T ss_dssp EEEETTTTEEEEEETTTT--EEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE
T ss_pred EEEEecCCEEEEEeCCCC--EEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEE
Confidence 999998887777765544 3555555533322223344556789999998776566542 2467777766543322222
Q ss_pred cccccceEEEEECCCCCeEEEEEc-CCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEee
Q 007229 187 REHSNFVNCIRFSPDGSKLISVSS-DRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEIL 265 (612)
Q Consensus 187 ~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~ 265 (612)
...-.....++++++++.|+.+.. .+.|...|+... ....+.. +.......+++.++ ..+++-...+.|...|.
T Consensus 167 ~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~-~~~~~~~--~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~- 241 (619)
T 3s94_A 167 NSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGT-NRQAVVK--GSLPHPFALTLFED-ILYWTDWSTHSILACNK- 241 (619)
T ss_dssp CSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCC-EEC-----------CCCEEESSS-EEEEECTTTCSEEEEES-
T ss_pred eCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCC-ccEEEEe--CCCCCceEEEEeCC-EEEEecCCCCEEEEEEC-
Confidence 223456789999998777776654 567888887643 3333311 11222346677654 33333334577888876
Q ss_pred cCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEE
Q 007229 266 EDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILS 345 (612)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 345 (612)
.+++....+......+ ..|.++................+....++...+.......
T Consensus 242 ---~tg~~~~~i~~~~~~p---------------------~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C 297 (619)
T 3s94_A 242 ---YTGEGLREIHSDIFSP---------------------MDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQC 297 (619)
T ss_dssp ---SSCCCCEECCSCCCCC---------------------SEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEE
T ss_pred ---CCCcccEEEecCCCCC---------------------cEEEEEccccCCCccccccCCCCcccceEECCCCCCCceE
Confidence 5555443332211000 1222332110000000011111223333333111111112
Q ss_pred EecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCcc-ceeccCCCcceeeecCCCC
Q 007229 346 SSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDA-EHIDVGSQPLDLSLALSSP 424 (612)
Q Consensus 346 ~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 424 (612)
.+.+|... ......|......+|+. +..+.|+..++........ ........+..+++.+.+.
T Consensus 298 ~C~~g~~l---------------~~d~~~C~~~~~~~Ll~-~~~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~ 361 (619)
T 3s94_A 298 ACPTGVKL---------------LENGKTCKDGATELLLL-ARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEG 361 (619)
T ss_dssp ECCTTCCB---------------CTTSSCBCSSCSEEEEE-EESSCEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTT
T ss_pred eCCchhee---------------cccCcccCCCCceEEEE-EcccceEEEecCCCccceeEEeccccCccEEEEEEcCCC
Confidence 22222211 00111111111222332 2344666666665443211 1112223456677777666
Q ss_pred cEEEEEee-ccEEEee-cccceeee-c-ccceEEEEEEccCCCeEE-EEecCCeEEEEEccCcccccceeeccccCceEE
Q 007229 425 ELALVSTE-SGVILLD-SLKVMSKI-D-LGFTVTACAIAPDGSEAI-VGGQNGKLHIYSISGNTLTEEMVLEKHRGAITV 499 (612)
Q Consensus 425 ~~~~~~~~-~~~~~~~-~~~~~~~~-~-~~~~i~~~~~s~~~~~l~-~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~ 499 (612)
.+...... +.+..++ ++.....+ . .-..+..+++.+.++.|. +-...+.|.+.++++... .......-.....
T Consensus 362 ~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~--~~l~~~~l~~P~~ 439 (619)
T 3s94_A 362 YIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMR--KILISEDLEEPRA 439 (619)
T ss_dssp EEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC--EEEECTTCCSEEE
T ss_pred eEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeE--EEEEECCCCCeee
Confidence 77666654 3455554 22222222 1 123567899997555444 444568999999886543 1222223356789
Q ss_pred EEEcCCCcEEEEEc--CCCeEEEEecCCcceeeecccccccceeEEEecCCCcEEEEee-cCcEEEEEEccCCCcceeee
Q 007229 500 IQYSPDVSMFASAD--GNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGS-IDTCVIIYEIGKPASSRITI 576 (612)
Q Consensus 500 ~~~s~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~ 576 (612)
|++.|...+|..+. ....|...++...... ......-...+.|++++++..|..+. ..+.|...++.... . ...
T Consensus 440 iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~-~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~-~-~~~ 516 (619)
T 3s94_A 440 IVLDPMVGYMYWTDWGEIPKIERAALDGSDRV-VLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTG-R-RVL 516 (619)
T ss_dssp EEEETTTTEEEEEECSSSCEEEEEETTSCSCE-EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCC-C-EEE
T ss_pred EEEEcCCCcEEEecCCCCCEEEEEccCCCccE-EEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCc-e-EEE
Confidence 99999644544443 2367777777654332 22222345678999998777666554 45789999987633 2 222
Q ss_pred ecccccCeeeEEEecCceEEEccCCCeEEEEE
Q 007229 577 KNAHLGGVYGVAFMDDFNVVSSGEDACIRVWR 608 (612)
Q Consensus 577 ~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~w~ 608 (612)
+........+|+...+...++-...+.|..-+
T Consensus 517 ~~~~l~~P~glav~~~~ly~tD~~~~~I~~~~ 548 (619)
T 3s94_A 517 VEDKIPHIFGFTLLGDYVYWTDWQRRSIERVH 548 (619)
T ss_dssp EECCCCSSCCEEEETTEEEEECTTSSCEEEEE
T ss_pred eccCCCCcEEEEEECCEEEEeecCCCeEEEEE
Confidence 22222233455554333344433444444433
No 219
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.53 E-value=2.5e-12 Score=117.32 Aligned_cols=291 Identities=9% Similarity=-0.086 Sum_probs=174.1
Q ss_pred EEEEeecCC----eEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEE----------cCCcEEEEecCCCCeeee
Q 007229 162 RIATCGEDF----LVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVS----------SDRKGLIYDGKSGEKIGE 227 (612)
Q Consensus 162 ~l~~~~~d~----~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~dg~i~vwd~~~~~~~~~ 227 (612)
..++...++ .|.+.|..+++.+.++.....+ .++++||+++++++. .++.|.+||+.+++.+.+
T Consensus 34 ~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~ 111 (368)
T 1mda_H 34 SHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIAD 111 (368)
T ss_dssp EEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEE
T ss_pred EEEECCccCCccceEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEE
Confidence 455555555 8889999999999988755555 799999999999886 368899999999999999
Q ss_pred eeccCCc----cccEEEEEEecCCCEEEEEeC--CCcEEE--EEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEE
Q 007229 228 FSSEDGH----HGSIYAVSWSPDGKKVLTVSA--DKSAKV--WEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHL 299 (612)
Q Consensus 228 ~~~~~~~----~~~v~~i~~~~~~~~l~~~~~--dg~i~i--w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (612)
+....+. ......++++|||++++++.. +..+.+ +|. .+ +..+....
T Consensus 112 I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~----~t---v~~i~v~~------------------ 166 (368)
T 1mda_H 112 IELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGA----SD---DQLTKSAS------------------ 166 (368)
T ss_dssp EEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTT----EE---EEEEECSS------------------
T ss_pred EECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEch----hh---ceEEECCC------------------
Confidence 8432100 123558899999999998875 356888 887 33 23322110
Q ss_pred EEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCC-----ceeee----eceecc
Q 007229 300 ITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGV-----GYSSK----LEKKYD 370 (612)
Q Consensus 300 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~-----~~~~~----~~~~~~ 370 (612)
. ....+.....+++.+.||.+.+.|... ++... ......
T Consensus 167 -----------------------------~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~ 214 (368)
T 1mda_H 167 -----------------------------C---FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSS 214 (368)
T ss_dssp -----------------------------C---CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCS
T ss_pred -----------------------------c---eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCC
Confidence 0 001111144555666677777777765 32221 011012
Q ss_pred cceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeeccc
Q 007229 371 ARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLG 450 (612)
Q Consensus 371 ~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (612)
.+. . ..+++.++..+. +.+.+.|................. ........+
T Consensus 215 ~P~-~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~----------------------------~~~~~~~~p 263 (368)
T 1mda_H 215 QAA-Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNES----------------------------GRKADNFRS 263 (368)
T ss_dssp CCE-E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCT----------------------------HHHHTTEEE
T ss_pred Ccc-c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccc----------------------------ccccccccc
Confidence 222 2 224444444444 777777765432110000000000 000000001
Q ss_pred ceEEEEEEccCCCeEEEEec-C--------CeEEEEEccCcccccceeeccccCceEEEEEcCCCcE-EEEEc-CCCeEE
Q 007229 451 FTVTACAIAPDGSEAIVGGQ-N--------GKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSM-FASAD-GNREAI 519 (612)
Q Consensus 451 ~~i~~~~~s~~~~~l~~~~~-d--------g~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~-l~~~~-~d~~i~ 519 (612)
.....++++||++.++++.. + +.+.++|+.+.+. ...+.... ....++|+|||++ +++.. .++.|.
T Consensus 264 ~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~v--v~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~Vs 340 (368)
T 1mda_H 264 AGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQT--SGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLD 340 (368)
T ss_dssp CSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCE--EECCEEEE-EECEEEECCSSSCEEEEEETTTTEEE
T ss_pred CcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeE--EEEEECCC-CcceEEECCCCCEEEEEccCCCCeEE
Confidence 11222689999998887654 2 3567999999887 34443322 5788999999984 55555 589999
Q ss_pred EEecCCcceeeecccccccceeEEEecC
Q 007229 520 VWDRVSKEVKLNNMLFHTARINCLAWSP 547 (612)
Q Consensus 520 iwd~~~~~~~~~~~~~~~~~i~~~~~s~ 547 (612)
++|+.+++.+.. +.. ......+++.+
T Consensus 341 VID~~t~kvv~~-I~v-g~~P~~i~~~~ 366 (368)
T 1mda_H 341 IYDAASDQDQSS-VEL-DKGPESLSVQN 366 (368)
T ss_dssp EEESSSCEEEEE-CCC-CSCCCEEECCC
T ss_pred EEECCCCcEEEE-EEC-CCCCCEEEeec
Confidence 999999998743 332 23344555543
No 220
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.51 E-value=9.5e-12 Score=113.51 Aligned_cols=263 Identities=7% Similarity=-0.064 Sum_probs=170.2
Q ss_pred EEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEee----------CcCeEEEeecCCCceeeeeeeec-------C
Q 007229 40 SVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASAD----------VSGSVRIWGTHNGFVLKNEFKVL-------S 102 (612)
Q Consensus 40 ~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~----------~d~~i~iwd~~~~~~~~~~~~~~-------~ 102 (612)
.|.+.|.++++.+..+.....+ .++++|||++|.++. .++.|.+||..+++. ...+... .
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~v-v~~I~v~~~~~~~~g 123 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLP-IADIELPDAPRFSVG 123 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCE-EEEEEETTSCSCCBS
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCE-EEEEECCCccccccC
Confidence 8899999999999888655555 799999999998885 478899999999984 4455433 1
Q ss_pred CCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCC---
Q 007229 103 GRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPP--- 179 (612)
Q Consensus 103 ~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~--- 179 (612)
.....++|+|||++|+++...... .+.+-.+|... +..+.--.. ..+.|+++..+++.+.|+.+.+.|+.+
T Consensus 124 ~~P~~ia~SpDGk~lyVan~~~~~-~v~V~~iD~~t-v~~i~v~~~----~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~ 197 (368)
T 1mda_H 124 PRVHIIGNCASSACLLFFLFGSSA-AAGLSVPGASD-DQLTKSASC----FHIHPGAAATHYLGSCPASLAASDLAAAPA 197 (368)
T ss_dssp CCTTSEEECTTSSCEEEEECSSSC-EEEEEETTTEE-EEEEECSSC----CCCEEEETTEEECCCCTTSCEEEECCSSCC
T ss_pred CCcceEEEcCCCCEEEEEccCCCC-eEEEEEEchhh-ceEEECCCc----eEEccCCCeEEEEEcCCCCEEEEECccccc
Confidence 346789999999999988653211 23442266544 444432111 223455554566777788888888876
Q ss_pred --Ceeee----cccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCC--eeeeeeccC-------CccccEEEEEEe
Q 007229 180 --FKFKL----SHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGE--KIGEFSSED-------GHHGSIYAVSWS 244 (612)
Q Consensus 180 --~~~~~----~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~-------~~~~~v~~i~~~ 244 (612)
++... .+.-...+. . ++++..++..+. +.+.+.|..++. .+..+.... ........++++
T Consensus 198 ~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s 272 (368)
T 1mda_H 198 AAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKL 272 (368)
T ss_dssp CCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEE
T ss_pred cCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEc
Confidence 44331 111122333 3 566666666677 999999986543 222221100 001111226899
Q ss_pred cCCCEEEEEeC-C--------CcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCC
Q 007229 245 PDGKKVLTVSA-D--------KSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASN 315 (612)
Q Consensus 245 ~~~~~l~~~~~-d--------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 315 (612)
|+++.++++.. . +.+.++|+ .+.+.+..+....
T Consensus 273 ~dg~~lyV~~~~~~~~~~~~~~~~~ViD~----~t~~vv~~i~vg~---------------------------------- 314 (368)
T 1mda_H 273 KNTDGIMILTVEHSRSCLAAAENTSSVTA----SVGQTSGPISNGH---------------------------------- 314 (368)
T ss_dssp TTTTEEEEEEEECSSCTTSCEEEEEEEES----SSCCEEECCEEEE----------------------------------
T ss_pred CCCCEEEEEeccccCcccccCCCEEEEEC----CCCeEEEEEECCC----------------------------------
Confidence 99998887543 2 35669999 7887776654331
Q ss_pred CCCCceeecCcccceeEEEEEecCCcEEEEEe-cCCcEEEEEcCCceeeeece
Q 007229 316 LDKAPLSFSGHVKNVSTLTALKISQQTILSSS-YDGAIIKWIRGVGYSSKLEK 367 (612)
Q Consensus 316 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~ 367 (612)
....+.+++.+...+++.. .++.|.++|+.+.+......
T Consensus 315 -------------~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~ 354 (368)
T 1mda_H 315 -------------DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVE 354 (368)
T ss_dssp -------------EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECC
T ss_pred -------------CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEE
Confidence 3566777743344667776 58999999999988776554
No 221
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.50 E-value=2.7e-11 Score=110.86 Aligned_cols=245 Identities=8% Similarity=0.052 Sum_probs=159.3
Q ss_pred cCcccceeEEEEEecCCcEEEE-------EecCCcEEEEEcCCceeeeece----ecccceEEEEeec--cEEEEecCCC
Q 007229 324 SGHVKNVSTLTALKISQQTILS-------SSYDGAIIKWIRGVGYSSKLEK----KYDARIKCLAAVE--EVIFTAGFDN 390 (612)
Q Consensus 324 ~~~~~~v~~~~~~~~~~~~l~~-------~~~dg~i~~wd~~~~~~~~~~~----~~~~~i~~~~~~~--~~l~~~~~~~ 390 (612)
........+++|. .++.++++ +..++.|..||..+++...... .+...+.++.++. +.++.+...+
T Consensus 14 ~~~~~~~~~~~~~-~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~ 92 (314)
T 1pjx_A 14 TEDIPGAEGPVFD-KNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRL 92 (314)
T ss_dssp ECCCTTCEEEEEC-TTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTT
T ss_pred hccCCCccCceEC-CCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCC
Confidence 3344456778887 33666666 5778999999987776544322 1335677787732 4555555555
Q ss_pred eEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEec
Q 007229 391 KVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQ 470 (612)
Q Consensus 391 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 470 (612)
.+..|+.. +...... ..... ......+.+++++++|+++++...
T Consensus 93 ~l~~~d~~-g~~~~~~-~~~~~----------------------------------~~~~~~~~~i~~d~~g~l~v~~~~ 136 (314)
T 1pjx_A 93 GLLVVQTD-GTFEEIA-KKDSE----------------------------------GRRMQGCNDCAFDYEGNLWITAPA 136 (314)
T ss_dssp EEEEEETT-SCEEECC-SBCTT----------------------------------SCBCBCCCEEEECTTSCEEEEECB
T ss_pred CEEEEeCC-CCEEEEE-eccCC----------------------------------CccccCCcCEEECCCCCEEEEecC
Confidence 78888876 3321000 00000 001124678999999988777655
Q ss_pred C---------------CeEEEEEccCcccccceeeccccCceEEEEEc----CCCcEEEE-EcCCCeEEEEecC-Ccce-
Q 007229 471 N---------------GKLHIYSISGNTLTEEMVLEKHRGAITVIQYS----PDVSMFAS-ADGNREAIVWDRV-SKEV- 528 (612)
Q Consensus 471 d---------------g~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s----~~~~~l~~-~~~d~~i~iwd~~-~~~~- 528 (612)
+ +.|..|+.. ++. ..+..+......++++ |+++.|.. ...++.|.+||+. +++.
T Consensus 137 ~~~~~~~~~~~~~~~~~~l~~~~~~-g~~---~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~ 212 (314)
T 1pjx_A 137 GEVAPADYTRSMQEKFGSIYCFTTD-GQM---IQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIE 212 (314)
T ss_dssp CBCTTSCCCBTTSSSCEEEEEECTT-SCE---EEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEE
T ss_pred cccccccccccccCCCCeEEEECCC-CCE---EEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccc
Confidence 4 567777765 443 2222334456889999 99976544 4567899999986 3432
Q ss_pred ---eeecccccc-cceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeecccccCeeeEEEe-cCce-EEEccCCC
Q 007229 529 ---KLNNMLFHT-ARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFM-DDFN-VVSSGEDA 602 (612)
Q Consensus 529 ---~~~~~~~~~-~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~-l~s~~~d~ 602 (612)
....+..+. ..+..++++++|+++++...++.|.+||.++ + +.+..+..+...+.+++|+ +++. +++...++
T Consensus 213 ~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~-g-~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~ 290 (314)
T 1pjx_A 213 NKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDG-G-QPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENN 290 (314)
T ss_dssp EEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTC-B-SCSEEEECSSSCEEEEEECTTSSEEEEEETTTT
T ss_pred cceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCC-C-cEeEEEeCCCCCceeEEECCCCCEEEEEeCCCC
Confidence 112233333 5678899999999888877888999999885 3 4555556666789999999 7774 45556678
Q ss_pred eEEEEEecc
Q 007229 603 CIRVWRLAT 611 (612)
Q Consensus 603 ~i~~w~~~~ 611 (612)
.|..|+++.
T Consensus 291 ~l~~~~~~~ 299 (314)
T 1pjx_A 291 AVWKFEWQR 299 (314)
T ss_dssp EEEEEECSS
T ss_pred eEEEEeCCC
Confidence 899998764
No 222
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.50 E-value=1.2e-11 Score=114.20 Aligned_cols=275 Identities=10% Similarity=0.043 Sum_probs=165.8
Q ss_pred cceEEEEECCCCCeEEEEEc--CCcEEEEecCCCCeeeeeec----cCCccccEEEEEEecCCCEEEEEeC-----CCcE
Q 007229 191 NFVNCIRFSPDGSKLISVSS--DRKGLIYDGKSGEKIGEFSS----EDGHHGSIYAVSWSPDGKKVLTVSA-----DKSA 259 (612)
Q Consensus 191 ~~v~~~~~s~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~----~~~~~~~v~~i~~~~~~~~l~~~~~-----dg~i 259 (612)
..+..++++|+|+.+++... ++.++||.+.+++. ..+.. ...+...+..++++++++++++-.. ++.|
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence 67899999999998877542 34355666555543 32211 1134568999999999886665433 5789
Q ss_pred EEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecC
Q 007229 260 KVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKIS 339 (612)
Q Consensus 260 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 339 (612)
.+||+ .+++.+..+..... ...+...+..+++.+.+
T Consensus 96 ~~~d~----~tg~~~~~~~~~~~----------------------------------------~~~~~~~~~~v~vd~~~ 131 (343)
T 2qe8_A 96 VAWDT----LNNQLSRVIYLPPP----------------------------------------ITLSNSFVNDLAVDLIH 131 (343)
T ss_dssp EEEET----TTTEEEEEEECCTT----------------------------------------TSCTTCCCCEEEEETTT
T ss_pred EEEEC----CCCeEEEEEECChh----------------------------------------hcccccccceEEEecCC
Confidence 99998 77776666543210 00122345677776333
Q ss_pred CcEEEEEe---cCCcEEEEEcCCceeeeeceecccce---EEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCC
Q 007229 340 QQTILSSS---YDGAIIKWIRGVGYSSKLEKKYDARI---KCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQ 413 (612)
Q Consensus 340 ~~~l~~~~---~dg~i~~wd~~~~~~~~~~~~~~~~i---~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 413 (612)
+..+++.. .++.|.+||..+++.......|.... ..+.+++..+.+...++.+..|.
T Consensus 132 g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~----------------- 194 (343)
T 2qe8_A 132 NFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPH----------------- 194 (343)
T ss_dssp TEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCC-----------------
T ss_pred CEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceecee-----------------
Confidence 44555555 67899999998776555432111100 11122333333333444333321
Q ss_pred cceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCC-eEEEEEccC---cc-----c
Q 007229 414 PLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNG-KLHIYSISG---NT-----L 484 (612)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-~v~i~d~~~---~~-----~ 484 (612)
..+..++++||++.|+++..++ .++.++... +. .
T Consensus 195 -------------------------------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~ 237 (343)
T 2qe8_A 195 -------------------------------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAEL 237 (343)
T ss_dssp -------------------------------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHH
T ss_pred -------------------------------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhh
Confidence 1357899999999998887766 555555321 11 0
Q ss_pred ccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccccccceeEEEecCCCcEEEEeecCcEEEEE
Q 007229 485 TEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIY 564 (612)
Q Consensus 485 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iw 564 (612)
.......++.+....++++++|.++++...++.|.+||.++++........+...+.+++|.++++++++.+..+.+.+|
T Consensus 238 ~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f 317 (343)
T 2qe8_A 238 GSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHSAPL 317 (343)
T ss_dssp HTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGSGGG
T ss_pred hcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCcccccccc
Confidence 00011223445667899999999999999999999999855554311111124568899999999888777655444333
No 223
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=99.49 E-value=8e-08 Score=94.98 Aligned_cols=493 Identities=9% Similarity=-0.079 Sum_probs=259.8
Q ss_pred CCceeEEEEccCCCEEEEec--CCEEEEEeCCCCce-eeEeccCCCceEEEEECCCCCEEE-EeeCcCeEEEeecCCCce
Q 007229 18 RGRGILISGNPKTDTILYCN--GRSVLIRYLDKPLH-VEFYGEHGYPVTVARYSPNGEWIA-SADVSGSVRIWGTHNGFV 93 (612)
Q Consensus 18 ~~~v~~~~~s~d~~~l~~~~--~~~i~i~~~~~~~~-~~~~~~h~~~v~~~~~s~d~~~la-s~~~d~~i~iwd~~~~~~ 93 (612)
-+.+.+++|++.+..|..+. .+.|..++++.... ...+...-.....+++.+.++.|. +-...+.|.+.++....
T Consensus 39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~- 117 (619)
T 3s94_A 39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL- 117 (619)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-
T ss_pred CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCC-
Confidence 34678999999888888776 58999999886532 333443336788999999665554 44567899999998764
Q ss_pred eeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeee-eccCCceEEEEEEcCCCCEEEEEeecCCeE
Q 007229 94 LKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGD-FDGHSRRVLSCEFKPTRPFRIATCGEDFLV 172 (612)
Q Consensus 94 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i 172 (612)
........-.....+++.|.+.+|..+...... .|....++ |..... ....-.....++++++++.+.++-...+.|
T Consensus 118 ~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~-~I~r~~~d-G~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I 195 (619)
T 3s94_A 118 RKVLFWQELDQPRAIALDPSSGFMYWTDWGEVP-KIERAGMD-GSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFI 195 (619)
T ss_dssp CEEEECSSCSCCCCEEEETTTTEEEEEECSSSC-EEEEEETT-SCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCE
T ss_pred EEEEEeCCCCCCceEEEecCCCeEEEeccCCCC-EEEEEECC-CCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeE
Confidence 222232344567899999987666665533211 23333333 332222 223445678999999877666666677889
Q ss_pred EEEeCCCCeeeecccccccceEEEEECCCCCeEEEEE-cCCcEEEEecCCCCeeeeeeccCCccccEEEEEE-ecCCCEE
Q 007229 173 NFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVS-SDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSW-SPDGKKV 250 (612)
Q Consensus 173 ~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~-~~~~~~l 250 (612)
...|+..........+.......|++.++ .|+.+. ..+.|...|..+++....+.. .......+++ +|..+--
T Consensus 196 ~~~~~dG~~~~~~~~~~~~~P~gi~~~~~--~ly~td~~~~~V~~~d~~tg~~~~~i~~---~~~~p~~i~v~~~~~qp~ 270 (619)
T 3s94_A 196 HKSNLDGTNRQAVVKGSLPHPFALTLFED--ILYWTDWSTHSILACNKYTGEGLREIHS---DIFSPMDIHAFSQQRQPN 270 (619)
T ss_dssp EEESSSCCEEC---------CCCEEESSS--EEEEECTTTCSEEEEESSSCCCCEECCS---CCCCCSEEEECCGGGSCC
T ss_pred EEecCCCCccEEEEeCCCCCceEEEEeCC--EEEEecCCCCEEEEEECCCCcccEEEec---CCCCCcEEEEEccccCCC
Confidence 99998765443333322233456777655 455443 467899999888876655521 1112233333 2211000
Q ss_pred E-EEeC-----CCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeec
Q 007229 251 L-TVSA-----DKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFS 324 (612)
Q Consensus 251 ~-~~~~-----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 324 (612)
. -.+. =..+++-... .....+. ..........-..|....+.++..+..+.|+..++.........+.
T Consensus 271 ~~n~C~~~ng~Cs~lCl~~~~--~~~~~C~----C~~g~~l~~d~~~C~~~~~~~Ll~~~~~~i~~i~l~~~~~~~~~~~ 344 (619)
T 3s94_A 271 ATNPCGIDNGGCSHLCLMSPV--KPFYQCA----CPTGVKLLENGKTCKDGATELLLLARRTDLRRISLDTPDFTDIVLQ 344 (619)
T ss_dssp CCCTTTTTGGGCSSEEEECSS--TTSEEEE----CCTTCCBCTTSSCBCSSCSEEEEEEESSCEEEEESSSTTCCCEECC
T ss_pred ccccccCCCCcccceEECCCC--CCCceEe----CCchheecccCcccCCCCceEEEEEcccceEEEecCCCccceeEEe
Confidence 0 0000 0112221110 0000000 0000000000011222234445555667788888766543322222
Q ss_pred -CcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEee---ccEEEEecCCCeEEEEecCCC
Q 007229 325 -GHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAV---EEVIFTAGFDNKVWRVPLCEG 400 (612)
Q Consensus 325 -~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~~~~i~~~~~~~~ 400 (612)
.....+.++++...++.++++-...+.|+.+++.......+....-.....++++ ++..++-...+.|.+.++...
T Consensus 345 ~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~ 424 (619)
T 3s94_A 345 LEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGT 424 (619)
T ss_dssp CSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred ccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCC
Confidence 1234566777774445666666678889999887654433332222345566663 344455556667777776543
Q ss_pred CCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEec--CCeEEEEE
Q 007229 401 ECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQ--NGKLHIYS 478 (612)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~--dg~v~i~d 478 (612)
... . +.. ..-.....+++.|...+|+.... .+.|...+
T Consensus 425 ~~~---~-----------------------------l~~--------~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~ 464 (619)
T 3s94_A 425 MRK---I-----------------------------LIS--------EDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAA 464 (619)
T ss_dssp SCE---E-----------------------------EEC--------TTCCSEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred eEE---E-----------------------------EEE--------CCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEc
Confidence 211 0 000 01124678899987555555443 36777777
Q ss_pred ccCcccccceeeccccCceEEEEEcCCCcEEEEE-cCCCeEEEEecCCcceeeecccccccceeEEEecCCCcEEEEeec
Q 007229 479 ISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASA-DGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSI 557 (612)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~ 557 (612)
++.... .......-...+.|++++++..|..+ ...+.|...++...... ......-.....++...+ .+..+-..
T Consensus 465 ~dG~~~--~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~~-~~~~~~l~~P~glav~~~-~ly~tD~~ 540 (619)
T 3s94_A 465 LDGSDR--VVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRR-VLVEDKIPHIFGFTLLGD-YVYWTDWQ 540 (619)
T ss_dssp TTSCSC--EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCE-EEEECCCCSSCCEEEETT-EEEEECTT
T ss_pred cCCCcc--EEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCceE-EEeccCCCCcEEEEEECC-EEEEeecC
Confidence 765443 11222223467889999866666555 45578999998655432 111111222345555433 33333334
Q ss_pred CcEEEEEEccC
Q 007229 558 DTCVIIYEIGK 568 (612)
Q Consensus 558 d~~i~iwd~~~ 568 (612)
.+.|...|..+
T Consensus 541 ~~~I~~~~k~~ 551 (619)
T 3s94_A 541 RRSIERVHKRS 551 (619)
T ss_dssp SSCEEEEESSS
T ss_pred CCeEEEEEcCC
Confidence 45566555554
No 224
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.49 E-value=8.1e-12 Score=113.29 Aligned_cols=224 Identities=9% Similarity=0.038 Sum_probs=148.4
Q ss_pred ceeEEEEccCCCEEEEec--CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeee
Q 007229 20 RGILISGNPKTDTILYCN--GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNE 97 (612)
Q Consensus 20 ~v~~~~~s~d~~~l~~~~--~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~ 97 (612)
.....+|+|+|+.|++.. ++.|..|+. +++ ...+..+...+..++++++|+++++...++.|.+|+.. ++ ....
T Consensus 46 ~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~-~~~~ 121 (305)
T 3dr2_A 46 WSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQ-AHLL 121 (305)
T ss_dssp SEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SC-EEEE
T ss_pred CccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CC-EEEE
Confidence 445789999999655554 689999998 444 34455677789999999999987776666889999986 44 2211
Q ss_pred eeec----CCCeEEEEECCCCCEEEE----EeCCC--------CeeeEEEEEec--CCceeeeeccCCceEEEEEEcCCC
Q 007229 98 FKVL----SGRIDDLQWSPDGLRIVA----CGDGK--------GKSFVRAFMWD--SGTTVGDFDGHSRRVLSCEFKPTR 159 (612)
Q Consensus 98 ~~~~----~~~i~~~~~s~~~~~l~~----~~~~~--------~~~~i~i~~~~--~~~~~~~~~~~~~~v~~~~~~~~~ 159 (612)
.... ...+..+++.|+|+.+++ +.... ......|+.++ +++... +. .......++|+|++
T Consensus 122 ~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~-~~-~~~~p~gl~~spdg 199 (305)
T 3dr2_A 122 VGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQR-MA-DLDHPNGLAFSPDE 199 (305)
T ss_dssp ECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEE-EE-EESSEEEEEECTTS
T ss_pred EeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEE-Ee-cCCCCcceEEcCCC
Confidence 1111 134678999999998876 22110 00013567776 344333 22 44556789999999
Q ss_pred CEEEEEeecC------CeEEEEeCCCCeee--ecc-cccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeec
Q 007229 160 PFRIATCGED------FLVNFYEGPPFKFK--LSH-REHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSS 230 (612)
Q Consensus 160 ~~~l~~~~~d------~~i~~wd~~~~~~~--~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 230 (612)
+. |+.+... +.|.+|++...... ..+ .........+++.++|+ |.+++.+ .|.+|+. +++.+..+..
T Consensus 200 ~~-lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~-lwv~~~~-gv~~~~~-~g~~~~~~~~ 275 (305)
T 3dr2_A 200 QT-LYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGW-LWSSSGT-GVCVFDS-DGQLLGHIPT 275 (305)
T ss_dssp SE-EEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSC-EEECCSS-EEEEECT-TSCEEEEEEC
T ss_pred CE-EEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCC-EEEecCC-cEEEECC-CCCEEEEEEC
Confidence 95 4444443 78999998754411 111 11233456789999998 4444544 5999997 5777777732
Q ss_pred cCCccccEEEEEEecCCCEEEEEeCCC
Q 007229 231 EDGHHGSIYAVSWSPDGKKVLTVSADK 257 (612)
Q Consensus 231 ~~~~~~~v~~i~~~~~~~~l~~~~~dg 257 (612)
...+.+++|.++++.|..++.++
T Consensus 276 ----~~~~~~~~f~~d~~~L~it~~~~ 298 (305)
T 3dr2_A 276 ----PGTASNCTFDQAQQRLFITGGPC 298 (305)
T ss_dssp ----SSCCCEEEECTTSCEEEEEETTE
T ss_pred ----CCceeEEEEeCCCCEEEEEcCCe
Confidence 22578899999998888887654
No 225
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.48 E-value=6.5e-11 Score=111.20 Aligned_cols=301 Identities=11% Similarity=-0.013 Sum_probs=173.7
Q ss_pred EEEEeecCCeEEEEeCCCCeeeeccccc---------ccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccC
Q 007229 162 RIATCGEDFLVNFYEGPPFKFKLSHREH---------SNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSED 232 (612)
Q Consensus 162 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~---------~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 232 (612)
.++.++.++.|..+|..+++.+...... ...+.+. ...++..+++++.++.|..+|.++|+.+.......
T Consensus 55 ~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~ 133 (376)
T 3q7m_A 55 VVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVAG 133 (376)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTCCEEEEEECSS
T ss_pred EEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeCCC
Confidence 5788888999999999999987665432 1223222 12245678888999999999999999887663221
Q ss_pred CccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEE
Q 007229 233 GHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFS 312 (612)
Q Consensus 233 ~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 312 (612)
. ........ +..+++++.++.+..+|. .+++.+-.+..................++.+++++.++.+..+|
T Consensus 134 ~---~~~~p~~~--~~~v~v~~~~g~l~~~d~----~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~g~l~~~d 204 (376)
T 3q7m_A 134 E---ALSRPVVS--DGLVLIHTSNGQLQALNE----ADGAVKWTVNLDMPSLSLRGESAPTTAFGAAVVGGDNGRVSAVL 204 (376)
T ss_dssp C---CCSCCEEE--TTEEEEECTTSEEEEEET----TTCCEEEEEECCC-----CCCCCCEEETTEEEECCTTTEEEEEE
T ss_pred c---eEcCCEEE--CCEEEEEcCCCeEEEEEC----CCCcEEEEEeCCCCceeecCCCCcEEECCEEEEEcCCCEEEEEE
Confidence 1 11111222 346777888999999999 88888877665432110001122223367888888899999999
Q ss_pred cCCCCCCceeecCcccc---------eeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEE
Q 007229 313 ASNLDKAPLSFSGHVKN---------VSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVI 383 (612)
Q Consensus 313 ~~~~~~~~~~~~~~~~~---------v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l 383 (612)
..+.............. +....... +..++.++.++.+..+|..+++.....
T Consensus 205 ~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~v~~~~~~g~l~~~d~~tG~~~w~~----------------- 265 (376)
T 3q7m_A 205 MEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVV--NGVVFALAYNGNLTALDLRSGQIMWKR----------------- 265 (376)
T ss_dssp TTTCCEEEEEECCC-----------CCCCCCEEE--TTEEEEECTTSCEEEEETTTCCEEEEE-----------------
T ss_pred CCCCcEEEEEecccCCCCcccccccccCCCcEEE--CCEEEEEecCcEEEEEECCCCcEEeec-----------------
Confidence 76543322211110000 00000011 344444445555555555443321110
Q ss_pred EEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCC
Q 007229 384 FTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGS 463 (612)
Q Consensus 384 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 463 (612)
. . .....+.. ++.
T Consensus 266 --------------~--------------------------------------------------~-~~~~~~~~--~~~ 278 (376)
T 3q7m_A 266 --------------E--------------------------------------------------L-GSVNDFIV--DGN 278 (376)
T ss_dssp --------------C--------------------------------------------------C-CCEEEEEE--ETT
T ss_pred --------------c--------------------------------------------------C-CCCCCceE--ECC
Confidence 0 0 00112222 356
Q ss_pred eEEEEecCCeEEEEEccCcccccceeec-cccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccccccceeE
Q 007229 464 EAIVGGQNGKLHIYSISGNTLTEEMVLE-KHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINC 542 (612)
Q Consensus 464 ~l~~~~~dg~v~i~d~~~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~ 542 (612)
.+++++.++.+..+|..+++.. .... .....+..... .+..|+.++.+|.+..+|..+++.+..... ....+.+
T Consensus 279 ~l~~~~~~g~l~~~d~~tG~~~--w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~-~~~~~~~ 353 (376)
T 3q7m_A 279 RIYLVDQNDRVMALTIDGGVTL--WTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQKV-DSSGFQT 353 (376)
T ss_dssp EEEEEETTCCEEEEETTTCCEE--EEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEEC-CTTCBCS
T ss_pred EEEEEcCCCeEEEEECCCCcEE--EeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEec-CCCccee
Confidence 7777888889999999888762 2222 11122222233 345788888999999999999988644322 2223322
Q ss_pred -EEecCCCcEEEEeecCcEEEEEE
Q 007229 543 -LAWSPSSTMVATGSIDTCVIIYE 565 (612)
Q Consensus 543 -~~~s~~~~~l~s~~~d~~i~iwd 565 (612)
... .+..|+.++.+|.++.|+
T Consensus 354 ~~~~--~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 354 EPVA--ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp CCEE--ETTEEEEEBTTSCEEEEE
T ss_pred CCEE--ECCEEEEEeCCCEEEEEe
Confidence 222 244677888899999887
No 226
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.48 E-value=1.1e-10 Score=109.86 Aligned_cols=202 Identities=10% Similarity=-0.031 Sum_probs=133.8
Q ss_pred CceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec--CC
Q 007229 60 YPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD--SG 137 (612)
Q Consensus 60 ~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~--~~ 137 (612)
.....++|+++|+++++...++.|++||..++. +..... ...... ++|+|+++.|+++..++.. .++.++ .+
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~-~~~~~~-~~~~~~-ia~~~~g~~l~~~d~~~~~---~I~~~d~~~~ 204 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNK-VTTVHP-GFKGGK-PAVTKDKQRVYSIGWEGTH---TVYVYMKASG 204 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTE-EEEEEE-TCCBCB-CEECTTSSEEEEEBSSTTC---EEEEEEGGGT
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCE-EEEeec-cCCCCc-eeEecCCCcEEEEecCCCc---eEEEEEcCCC
Confidence 367899999999988888788999999999876 332332 233344 9999999999888775532 355555 33
Q ss_pred ceeeee----ccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeec----ccccccce--EEEEECCC-CCeEE
Q 007229 138 TTVGDF----DGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLS----HREHSNFV--NCIRFSPD-GSKLI 206 (612)
Q Consensus 138 ~~~~~~----~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~----~~~~~~~v--~~~~~s~~-~~~l~ 206 (612)
.....+ ......+.+++++|++..+++ +..++.|+.||..++..... ..++...- ..++|+|+ +.+++
T Consensus 205 ~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv 283 (409)
T 3hrp_A 205 WAPTRIGQLGSTFSGKIGAVALDETEEWLYF-VDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYM 283 (409)
T ss_dssp TCEEEEEECCTTSCSCCCBCEECTTSSEEEE-ECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEE
T ss_pred ceeEEeeeccchhcCCcEEEEEeCCCCeEEE-EECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEE
Confidence 333333 225567789999996554444 66788999999987754332 22222222 39999996 44444
Q ss_pred EEEcCCcEEEEecCCCCeeeeeecc--C---------CccccEEEEEEecCCCEEEEEe-CCCcEEEEEeecCCCCCee
Q 007229 207 SVSSDRKGLIYDGKSGEKIGEFSSE--D---------GHHGSIYAVSWSPDGKKVLTVS-ADKSAKVWEILEDGSGGRV 273 (612)
Q Consensus 207 ~~~~dg~i~vwd~~~~~~~~~~~~~--~---------~~~~~v~~i~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~ 273 (612)
+-..++.|+.|+... +........ . ..-.....++++|+|+++++-. .++.|+.|++ .++..
T Consensus 284 ~d~~~~~I~~~~~~g-~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~----~~G~v 357 (409)
T 3hrp_A 284 SDQNLSSVYKITPDG-ECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDI----LDGYV 357 (409)
T ss_dssp EETTTTEEEEECTTC-CEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEET----TTTEE
T ss_pred EeCCCCEEEEEecCC-CEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEEC----CCCEE
Confidence 445578899998653 322222100 0 0123478999999999777766 7889999997 55543
No 227
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.48 E-value=9.4e-12 Score=126.48 Aligned_cols=199 Identities=9% Similarity=0.086 Sum_probs=132.1
Q ss_pred cCCCceEEEEECCCCCEEEE-----eeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCC------
Q 007229 57 EHGYPVTVARYSPNGEWIAS-----ADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKG------ 125 (612)
Q Consensus 57 ~h~~~v~~~~~s~d~~~las-----~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~------ 125 (612)
+|...+..++|||||++||. |+...+|++||+.+++.+...+.. .....++|+ ||+.|+.+..+..
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~--~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~ 202 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKD--VKFSGISWL-GNEGFFYSSYDKPDGSELS 202 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEE--EESCCCEEE-TTTEEEEEESSCCC-----
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCC--ceeccEEEe-CCCEEEEEEecCccccccc
Confidence 46678999999999999994 334467999999999854332222 123578999 9999999887642
Q ss_pred --eeeEEEEEec--CCc----eeeeecc-CCceEEEEEEcCCCCEEEEEeecC---CeEEEEeCCCCe-eeecccccccc
Q 007229 126 --KSFVRAFMWD--SGT----TVGDFDG-HSRRVLSCEFKPTRPFRIATCGED---FLVNFYEGPPFK-FKLSHREHSNF 192 (612)
Q Consensus 126 --~~~i~i~~~~--~~~----~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~d---~~i~~wd~~~~~-~~~~~~~~~~~ 192 (612)
...-+||.|+ ++. .+..... |......+.|+|||++++++.+.+ ..|+++|+.++. ....+..+...
T Consensus 203 ~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~ 282 (693)
T 3iuj_A 203 ARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDA 282 (693)
T ss_dssp --CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSS
T ss_pred ccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCc
Confidence 1122455555 332 3333444 556678899999999866665533 589999987763 33345555555
Q ss_pred eEEEEECCCCCeEEEEEc-C---CcEEEEecCCCCe--eeeeeccCCccccEEEEEEecCCCEEEEEeCCC---cEEEEE
Q 007229 193 VNCIRFSPDGSKLISVSS-D---RKGLIYDGKSGEK--IGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADK---SAKVWE 263 (612)
Q Consensus 193 v~~~~~s~~~~~l~~~~~-d---g~i~vwd~~~~~~--~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg---~i~iw~ 263 (612)
.... ++++|..|+..+. + +.|..+|+.++.. ...+. .+...+. .|++++++|+....++ .|++|+
T Consensus 283 ~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~---~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d 356 (693)
T 3iuj_A 283 DVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLI---PERQQVL--TVHSGSGYLFAEYMVDATARVEQFD 356 (693)
T ss_dssp CEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEE---CCCSSCE--EEEEETTEEEEEEEETTEEEEEEEC
T ss_pred eEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEe---cCCCCEE--EEEEECCEEEEEEEECCeeEEEEEE
Confidence 5554 6677776665554 2 5799999988764 23331 3444444 8899898887766543 577777
Q ss_pred e
Q 007229 264 I 264 (612)
Q Consensus 264 ~ 264 (612)
+
T Consensus 357 ~ 357 (693)
T 3iuj_A 357 Y 357 (693)
T ss_dssp T
T ss_pred C
Confidence 6
No 228
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.47 E-value=8.5e-11 Score=110.38 Aligned_cols=304 Identities=8% Similarity=-0.003 Sum_probs=188.6
Q ss_pred CCCEEEEeeCcCeEEEeecCCCceeeeeeeec--------CCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceee
Q 007229 70 NGEWIASADVSGSVRIWGTHNGFVLKNEFKVL--------SGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVG 141 (612)
Q Consensus 70 d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~--------~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~ 141 (612)
++..|..++.++.|..+|..+++.+....... ...+... ...++..+++++.++ .+..++.++|+.+.
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g---~l~a~d~~tG~~~W 127 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKA---QVYALNTSDGTVAW 127 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEE-EEEETTEEEEEETTS---EEEEEETTTCCEEE
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccC-ceEeCCEEEEEcCCC---EEEEEECCCCCEEE
Confidence 35677777788999999999998543222111 1222222 222455666666665 35555666888887
Q ss_pred eeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccce-----EEEEECCCCCeEEEEEcCCcEEE
Q 007229 142 DFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFV-----NCIRFSPDGSKLISVSSDRKGLI 216 (612)
Q Consensus 142 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v-----~~~~~s~~~~~l~~~~~dg~i~v 216 (612)
............... ++ .++.++.++.|..+|..+++.+.......... ...... +..++.++.++.+..
T Consensus 128 ~~~~~~~~~~~p~~~-~~--~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~ 202 (376)
T 3q7m_A 128 QTKVAGEALSRPVVS-DG--LVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSA 202 (376)
T ss_dssp EEECSSCCCSCCEEE-TT--EEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEE
T ss_pred EEeCCCceEcCCEEE-CC--EEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEE
Confidence 766543322222222 33 58888899999999999999887654332111 112222 446788888999999
Q ss_pred EecCCCCeeeeeeccCCccc-cEEE---EEEec--CCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeee
Q 007229 217 YDGKSGEKIGEFSSEDGHHG-SIYA---VSWSP--DGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLV 290 (612)
Q Consensus 217 wd~~~~~~~~~~~~~~~~~~-~v~~---i~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (612)
+|..+|+.+........... .+.. +.-.| .+..++.++.++.+..+|. .+++.+-...... ..
T Consensus 203 ~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~----~tG~~~w~~~~~~-------~~ 271 (376)
T 3q7m_A 203 VLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDL----RSGQIMWKRELGS-------VN 271 (376)
T ss_dssp EETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEET----TTCCEEEEECCCC-------EE
T ss_pred EECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEEC----CCCcEEeeccCCC-------CC
Confidence 99999998877632111000 0000 00111 2456777788999999999 8888776554321 22
Q ss_pred eeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecc
Q 007229 291 GCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYD 370 (612)
Q Consensus 291 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~ 370 (612)
.....++.+++++.++.+..+|..+.......-............. +..++.++.+|.+..+|..+++.........
T Consensus 272 ~~~~~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~---~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~ 348 (376)
T 3q7m_A 272 DFIVDGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLY---NGNLVVGDSEGYLHWINVEDGRFVAQQKVDS 348 (376)
T ss_dssp EEEEETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEE---TTEEEEECTTSEEEEEETTTCCEEEEEECCT
T ss_pred CceEECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEE---CCEEEEEeCCCeEEEEECCCCcEEEEEecCC
Confidence 3444588999999999999999776544322211112222222222 6788899999999999999988766544322
Q ss_pred cceE-EEEeeccEEEEecCCCeEEEEe
Q 007229 371 ARIK-CLAAVEEVIFTAGFDNKVWRVP 396 (612)
Q Consensus 371 ~~i~-~~~~~~~~l~~~~~~~~i~~~~ 396 (612)
..+. .....++.++.++.+|.+..|+
T Consensus 349 ~~~~~~~~~~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 349 SGFQTEPVAADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp TCBCSCCEEETTEEEEEBTTSCEEEEE
T ss_pred CcceeCCEEECCEEEEEeCCCEEEEEe
Confidence 3332 2334688899999999998886
No 229
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.46 E-value=5e-10 Score=100.96 Aligned_cols=211 Identities=11% Similarity=0.059 Sum_probs=135.5
Q ss_pred eccCCCceEEEEECCC-CCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEE
Q 007229 55 YGEHGYPVTVARYSPN-GEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFM 133 (612)
Q Consensus 55 ~~~h~~~v~~~~~s~d-~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~ 133 (612)
+..+..--.+..|+|+ +.++++...++.|..||..+++. ........+.+++++|+|+++++ ..+ .+.+++
T Consensus 8 ~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~---~~~~~~~~~~~i~~~~dG~l~v~-~~~----~l~~~d 79 (297)
T 3g4e_A 8 LPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV---QRVTMDAPVSSVALRQSGGYVAT-IGT----KFCALN 79 (297)
T ss_dssp ECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE---EEEECSSCEEEEEEBTTSSEEEE-ETT----EEEEEE
T ss_pred eccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE---EEEeCCCceEEEEECCCCCEEEE-ECC----eEEEEE
Confidence 3344455668999995 45666666789999999998763 22335678999999999995554 433 245555
Q ss_pred ecCCceeeeecc----CCceEEEEEEcCCCCEEEEEeec---------CCeEEEEeCCCCeeeecccccccceEEEEECC
Q 007229 134 WDSGTTVGDFDG----HSRRVLSCEFKPTRPFRIATCGE---------DFLVNFYEGPPFKFKLSHREHSNFVNCIRFSP 200 (612)
Q Consensus 134 ~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~~~~~---------d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~ 200 (612)
+++++....... ....+..++++|+|+. +++... ...-.+|.+........+..+......++|+|
T Consensus 80 ~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l-~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~sp 158 (297)
T 3g4e_A 80 WKEQSAVVLATVDNDKKNNRFNDGKVDPAGRY-FAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSL 158 (297)
T ss_dssp TTTTEEEEEEECCTTCSSEEEEEEEECTTSCE-EEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECT
T ss_pred CCCCcEEEEEecCCCCCCCCCCCEEECCCCCE-EEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcC
Confidence 555554322221 2356889999999984 554322 12234444432222222333445578999999
Q ss_pred CCCeEEEE-EcCCcEEEEec--CCCCee--eeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEe
Q 007229 201 DGSKLISV-SSDRKGLIYDG--KSGEKI--GEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIK 275 (612)
Q Consensus 201 ~~~~l~~~-~~dg~i~vwd~--~~~~~~--~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 275 (612)
|++.|+.+ +.++.|.+|++ .++... ..+.........+..++++++|++.++....+.|..||. .+++.+.
T Consensus 159 dg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~----~tG~~~~ 234 (297)
T 3g4e_A 159 DHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDP----VTGKRLQ 234 (297)
T ss_dssp TSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECT----TTCCEEE
T ss_pred CCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcC----CCceEEE
Confidence 99977554 44788999987 455432 112111233456789999999987777777788999998 6677766
Q ss_pred eee
Q 007229 276 TFA 278 (612)
Q Consensus 276 ~~~ 278 (612)
.+.
T Consensus 235 ~i~ 237 (297)
T 3g4e_A 235 TVK 237 (297)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 230
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=99.45 E-value=3.4e-07 Score=96.74 Aligned_cols=558 Identities=11% Similarity=0.099 Sum_probs=294.9
Q ss_pred eEEEEccCCCEEEEec---CCEEEEEeCCCC------ceeeEeccCCCceEEEEECCC----CCEEEEe---eCcCeEEE
Q 007229 22 ILISGNPKTDTILYCN---GRSVLIRYLDKP------LHVEFYGEHGYPVTVARYSPN----GEWIASA---DVSGSVRI 85 (612)
Q Consensus 22 ~~~~~s~d~~~l~~~~---~~~i~i~~~~~~------~~~~~~~~h~~~v~~~~~s~d----~~~las~---~~d~~i~i 85 (612)
+++++-.+| +|+.|+ |+.++-|+.... +.+..+. .-++|..++.... ...|+++ +.+|.+++
T Consensus 330 ssl~~l~~g-~lFvgS~~Gds~l~~~~~~~~~~~~~~~~~~~~~-N~~PI~D~~v~d~~~~~~~~i~~~sG~g~~gsL~~ 407 (1158)
T 3ei3_A 330 ECLTYLDNG-VVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFT-NLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRI 407 (1158)
T ss_dssp SEEEECSTT-EEEEECSSSCEEEEEECSSCCTTSCCEEEEEEEC-CCCSEEEEEEECTTSSSCCEEEEEECCGGGCEEEE
T ss_pred cEEEEECCC-EEEEEEecCCcEEEEEecCCCCccceEEeEeeec-CcCCceeEEEEccCCCCCCeEEEEECcCCCCeEEE
Confidence 567777766 556665 334444443221 2233333 4578888887542 1244433 36788888
Q ss_pred eecCCCceeeeeee-ecCCCeEEEEEC---CCCCEEEEEeCCCCeeeEEEEEecCCceeeeec--cC---CceEEEEEEc
Q 007229 86 WGTHNGFVLKNEFK-VLSGRIDDLQWS---PDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFD--GH---SRRVLSCEFK 156 (612)
Q Consensus 86 wd~~~~~~~~~~~~-~~~~~i~~~~~s---~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~--~~---~~~v~~~~~~ 156 (612)
..-.-+-.....+. ..-..++.+... +...+|+....+.. .|...+ ++.+.... +- ...+.+-.+
T Consensus 408 lr~Gi~~~~~~~~~l~gv~~iWtl~~~~~~~~~~yLvlS~~~~T----~Vl~i~-~e~veev~~~gf~~~~~TL~~~~l- 481 (1158)
T 3ei3_A 408 IRNGIGIHEHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQT----RVLMLN-GEEVEETELMGFVDDQQTFFCGNV- 481 (1158)
T ss_dssp EEESBCEEEEEEECCCSCCEEEEECCCSSCSSCCEEEEEETTEE----EEEEEE-TTEEEEECCTTCCSSSCEEEEEEE-
T ss_pred EecCCCEEEEEeecCCCccEEEEEeecCCCCCCCEEEEECCCCe----EEEEEe-CCcccccccccccCCCCcEEEEEc-
Confidence 75443221111111 112345555433 23457766655542 233332 22222221 11 111111111
Q ss_pred CCCCEEEEEeecCCeEEEEeCCCCeeeeccccc-ccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCcc
Q 007229 157 PTRPFRIATCGEDFLVNFYEGPPFKFKLSHREH-SNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHH 235 (612)
Q Consensus 157 ~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 235 (612)
+++ .++=... ..|++.+......+..+... ...|...+.+ +.+++.++ .+.+..+++..++... ... ....
T Consensus 482 ~~~--~ivQVt~-~~Irli~~~~~~~~~~w~~p~~~~I~~As~n--~~~vvva~-g~~l~~fel~~~~L~~-~~~-~~l~ 553 (1158)
T 3ei3_A 482 AHQ--QLIQITS-ASVRLVSQEPKALVSEWKEPQAKNISVASCN--SSQVVVAV-GRALYYLQIHPQELRQ-ISH-TEME 553 (1158)
T ss_dssp TTT--EEEEEES-SCEEEEESSSCCEEEEECCTTCCCCCEEEEC--SSEEEEEE-TTEEEEEEEETTEEEE-EEE-EECS
T ss_pred CCC--eEEEEec-CEEEEEECCCCeEEEEEECCCCCEEEEEEeC--CCEEEEEE-CCEEEEEEeeCCceee-ecc-cCCC
Confidence 222 2332222 23667776554445444432 2356666655 34666665 6788888887654322 211 1345
Q ss_pred ccEEEEEEecC------CCEEEEEeC-CCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeecc-CCEEEEEEcCCE
Q 007229 236 GSIYAVSWSPD------GKKVLTVSA-DKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQ-NDHLITVSLGGI 307 (612)
Q Consensus 236 ~~v~~i~~~~~------~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 307 (612)
..|.++++.|. ++++++|.. |++++++++ ...+.+........... ..+....+. ..++.+|-.+|.
T Consensus 554 ~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL----~~l~~~~~~~L~~~~~p-~si~l~~~~~~~~L~igl~dG~ 628 (1158)
T 3ei3_A 554 HEVACLDITPLGDSNGLSPLCAIGLWTDISARILKL----PSFELLHKEMLGGEIIP-RSILMTTFESSHYLLCALGDGA 628 (1158)
T ss_dssp SCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEET----TTCCEEEEEECCSSCCE-EEEEEEEETTEEEEEEEETTSE
T ss_pred CceEEEEeecCCCCcccccEEEEEECCCCEEEEEEC----CCCCeEEEEECCCCCCC-cEEEEEEeCCCcEEEEEeCCCe
Confidence 67999999863 468999986 999999999 66565554443321111 122222222 457888899999
Q ss_pred EEEEEcCCCCCCce----eecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEe-----
Q 007229 308 ISIFSASNLDKAPL----SFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAA----- 378 (612)
Q Consensus 308 i~~~~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~----- 378 (612)
+..+.+........ ...| ..++.-..+...+...+++.+ +....++..+.. .. ........+..++.
T Consensus 629 l~~~~~d~~tg~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a~s-~rp~liy~~~~~-l~-~s~l~~~~v~~~~~F~se~ 704 (1158)
T 3ei3_A 629 LFYFGLNIETGLLSDRKKVTLG-TQPTVLRTFRSLSTTNVFACS-DRPTVIYSSNHK-LV-FSNVNLKEVNYMCPLNSDG 704 (1158)
T ss_dssp EEEEEECTTTCCEEEEEEEECC-SSCCEEEEEESSSCEEEEEES-SSCEEEEESSSS-EE-EEEBSSSCCCEEEEECCSS
T ss_pred EEEEEEcCCCCccccceeEEcC-CCceEEEEEeeCCceeEEEEC-CCCEEEEEcCCc-eE-EeccChHHhceEeccCccc
Confidence 88777553221111 1222 234433333322222333333 444444443322 11 11112223333333
Q ss_pred eccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeec-------------------------
Q 007229 379 VEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTES------------------------- 433 (612)
Q Consensus 379 ~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------- 433 (612)
.++-++..+ ++.+++..+.+........+.....+..++++|..+.+++.....
T Consensus 705 ~~~g~v~~~-~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 783 (1158)
T 3ei3_A 705 YPDSLALAN-NSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSV 783 (1158)
T ss_dssp STTEEEEEC-SSCEEEEEECCSSSEEEEEEECSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEE
T ss_pred CCCcEEEEc-CCceEEEEecccCCeeEEEEeCCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcc
Confidence 133444444 445888887665544455667777888888888776655544321
Q ss_pred ------------------------cEEEee--cccceeeec--ccceEEEEEE---ccC-CCeEEEEe----------cC
Q 007229 434 ------------------------GVILLD--SLKVMSKID--LGFTVTACAI---APD-GSEAIVGG----------QN 471 (612)
Q Consensus 434 ------------------------~~~~~~--~~~~~~~~~--~~~~i~~~~~---s~~-~~~l~~~~----------~d 471 (612)
.+.+++ +.+.+..++ ....+.+++. ..+ ..++++|+ ..
T Consensus 784 ~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~ 863 (1158)
T 3ei3_A 784 SSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQ 863 (1158)
T ss_dssp CCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCC
T ss_pred cccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCc
Confidence 122333 222222222 3444555553 322 47888886 35
Q ss_pred CeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccccccceeEEEecCCCcE
Q 007229 472 GKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTM 551 (612)
Q Consensus 472 g~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 551 (612)
|.|++|++..+++..... ...++++++++-- +|++||.. ..++++|++...+.+..... +-..|..+.....+++
T Consensus 864 Gri~vf~v~~~kL~lv~~-~~v~g~v~al~~~-~g~Lla~i--g~~l~vy~l~~~~~L~~~~~-~~~~i~~~~l~~~~~~ 938 (1158)
T 3ei3_A 864 GRIVVFQYSDGKLQTVAE-KEVKGAVYSMVEF-NGKLLASI--NSTVRLYEWTTEKELRTECN-HYNNIMALYLKTKGDF 938 (1158)
T ss_dssp EEEEEEEEETTEEEEEEE-EEESSCEEEEEEE-TTEEEEEE--TTEEEEEEECTTSCEEEEEE-ECCCSCEEEEEEETTE
T ss_pred eEEEEEEEECCEEEEEEE-EEcCCcCEEEeee-CCEEEEEc--CCEEEEEECCCCceEEEEee-ccccEEEEEEeccCCE
Confidence 789999998665533322 2346788887743 45555544 36899999987654321111 1112333333335778
Q ss_pred EEEeecCcEEEEEEccCCCcceeeeec--ccccCeeeEEEecCceEEEccCCCeEEEEEecc
Q 007229 552 VATGSIDTCVIIYEIGKPASSRITIKN--AHLGGVYGVAFMDDFNVVSSGEDACIRVWRLAT 611 (612)
Q Consensus 552 l~s~~~d~~i~iwd~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~l~s~~~d~~i~~w~~~~ 611 (612)
++.|+.-..+.+..++... ..+..+. .+...++++.|.+...++.+..+|.|.+.+.+.
T Consensus 939 I~vgD~~~Sv~~~~y~~~~-~~L~~~a~D~~~~~vta~~~ld~~t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 939 ILVGDLMRSVLLLAYKPME-GNFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp EEEEESSBCEEEEEEETTT-TEEEEEEECCSCBCEEEEEEEETTEEEEEETTSEEEEEEECT
T ss_pred EEEEEhhheEEEEEEEcCC-CeEEEEEeecccccEEEEEEEccCcEEEEcCCCcEEEEecCC
Confidence 9999888888887776533 3444333 345578899998667888899999999988764
No 231
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.44 E-value=4.3e-11 Score=109.14 Aligned_cols=228 Identities=13% Similarity=0.048 Sum_probs=152.7
Q ss_pred EEc--cCCCEEEEec--CCEEEEEeCCCC----ceeeEec------c-CCCceEEEEECCCCCEEEEeeCc------CeE
Q 007229 25 SGN--PKTDTILYCN--GRSVLIRYLDKP----LHVEFYG------E-HGYPVTVARYSPNGEWIASADVS------GSV 83 (612)
Q Consensus 25 ~~s--~d~~~l~~~~--~~~i~i~~~~~~----~~~~~~~------~-h~~~v~~~~~s~d~~~las~~~d------~~i 83 (612)
.++ +++++|++.+ ++.|+|+|+.+. +..++++ . ....-..+..+||| +++++..+ |.|
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v 166 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGI 166 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeE
Confidence 347 8999999987 689999998744 5555553 1 11245567889999 77766555 789
Q ss_pred EEeecCCCceeeeeeeecCC---CeEEEEECCCCCEEEEEeCC----------------CCeeeEEEEEecCCceeeeec
Q 007229 84 RIWGTHNGFVLKNEFKVLSG---RIDDLQWSPDGLRIVACGDG----------------KGKSFVRAFMWDSGTTVGDFD 144 (612)
Q Consensus 84 ~iwd~~~~~~~~~~~~~~~~---~i~~~~~s~~~~~l~~~~~~----------------~~~~~i~i~~~~~~~~~~~~~ 144 (612)
.+.|..+.+. ......... --..+.|+|+++.+++..-. .....+.+|++++++.+.++.
T Consensus 167 ~vlD~~T~~v-~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~ 245 (462)
T 2ece_A 167 LMLDHYSFEP-LGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLT 245 (462)
T ss_dssp EEECTTTCCE-EEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEE
T ss_pred EEEECCCCeE-EEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEe
Confidence 9999999884 444442211 23458889999988887511 011268899998888888776
Q ss_pred cC--CceEEEEEE--cCCCCEEEEEee-----cCCeEEEEeCCCCeee--ecc--cc----------------cccceEE
Q 007229 145 GH--SRRVLSCEF--KPTRPFRIATCG-----EDFLVNFYEGPPFKFK--LSH--RE----------------HSNFVNC 195 (612)
Q Consensus 145 ~~--~~~v~~~~~--~~~~~~~l~~~~-----~d~~i~~wd~~~~~~~--~~~--~~----------------~~~~v~~ 195 (612)
-- ......+.| +|++++..+++. .+++|.+|....++.. ..+ .. -......
T Consensus 246 vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~ 325 (462)
T 2ece_A 246 LGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTD 325 (462)
T ss_dssp SCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCC
T ss_pred cCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeE
Confidence 53 234455655 999998777777 7788877654433211 110 00 0245788
Q ss_pred EEECCCCCeEEEEEc-CCcEEEEecCCC---CeeeeeeccCC-----c------cccEEEEEEecCCCEEEEEe
Q 007229 196 IRFSPDGSKLISVSS-DRKGLIYDGKSG---EKIGEFSSEDG-----H------HGSIYAVSWSPDGKKVLTVS 254 (612)
Q Consensus 196 ~~~s~~~~~l~~~~~-dg~i~vwd~~~~---~~~~~~~~~~~-----~------~~~v~~i~~~~~~~~l~~~~ 254 (612)
+.+||||++|+++.. .+.|.+||+... +.+..+..... | .+....++++|||++|+++.
T Consensus 326 I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 326 IDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp EEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred EEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 999999999988776 688999998633 34444422100 0 11357899999999999987
No 232
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.43 E-value=2.2e-11 Score=112.39 Aligned_cols=240 Identities=9% Similarity=-0.015 Sum_probs=151.6
Q ss_pred CceeEEEEccCCCEEEEec---CCEEEEEeCCCCceeeE------eccCCCceEEEEECCCCCEEEEeeC-----cCeEE
Q 007229 19 GRGILISGNPKTDTILYCN---GRSVLIRYLDKPLHVEF------YGEHGYPVTVARYSPNGEWIASADV-----SGSVR 84 (612)
Q Consensus 19 ~~v~~~~~s~d~~~l~~~~---~~~i~i~~~~~~~~~~~------~~~h~~~v~~~~~s~d~~~las~~~-----d~~i~ 84 (612)
..+..++++|+|+.+++.. ++.+.||.+.+++.... ..+|-..+..++++++|++.++-.. ++.|.
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~ 96 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLV 96 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEE
Confidence 3678999999999988863 33245555545554311 1235578999999999987776543 57899
Q ss_pred EeecCCCceeeeeeee------cCCCeEEEEECCCCCEEEEEeCC-CCeeeEEEEEecCCceeeeeccCC----------
Q 007229 85 IWGTHNGFVLKNEFKV------LSGRIDDLQWSPDGLRIVACGDG-KGKSFVRAFMWDSGTTVGDFDGHS---------- 147 (612)
Q Consensus 85 iwd~~~~~~~~~~~~~------~~~~i~~~~~s~~~~~l~~~~~~-~~~~~i~i~~~~~~~~~~~~~~~~---------- 147 (612)
+||+.+++. ...+.. +...+..++++|++..+..+... .....+.++++++++..+.+.+|.
T Consensus 97 ~~d~~tg~~-~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~ 175 (343)
T 2qe8_A 97 AWDTLNNQL-SRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLV 175 (343)
T ss_dssp EEETTTTEE-EEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCE
T ss_pred EEECCCCeE-EEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccccccee
Confidence 999998873 333332 22356899999876555444320 011146667766777666554421
Q ss_pred -------------------ceEEEEEEcCCCCEEEEEeecCC-eEEEEeCC---CCe-----eeec--ccccccceEEEE
Q 007229 148 -------------------RRVLSCEFKPTRPFRIATCGEDF-LVNFYEGP---PFK-----FKLS--HREHSNFVNCIR 197 (612)
Q Consensus 148 -------------------~~v~~~~~~~~~~~~l~~~~~d~-~i~~wd~~---~~~-----~~~~--~~~~~~~v~~~~ 197 (612)
..+..++|+|+++. |+.+..++ .+..++.. .+. .... ..++......++
T Consensus 176 ~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~-ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia 254 (343)
T 2qe8_A 176 IDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEW-LYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGIS 254 (343)
T ss_dssp ETTEECBEECTTSCEECCCCCEEEEEECTTSCE-EEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEE
T ss_pred ECCEEEEeccCCCceeceecccceeEeccCCCE-EEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEE
Confidence 23578999999985 55555444 55555421 111 0011 113444567899
Q ss_pred ECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEE
Q 007229 198 FSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVW 262 (612)
Q Consensus 198 ~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw 262 (612)
++++|++.++...++.|.+||.++++...... ......+.+++|.++++++++.+..+.+.+|
T Consensus 255 ~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~--~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f 317 (343)
T 2qe8_A 255 IDKDHNIYVGDLAHSAIGVITSADRAYKLLVT--DEKLSWTDSFNFGSDGYLYFDCNQLHHSAPL 317 (343)
T ss_dssp ECTTCCEEEEEGGGTEEEEEETTTTEEEEEEE--CGGGSCEEEEEECTTSCEEEEECCGGGSGGG
T ss_pred ECCCCCEEEEccCCCeEEEEECCCCCEEEEEE--CCceecCCeeEECCCCcEEEEeCcccccccc
Confidence 99999988888888999999985665433331 1234568899999998877777655444333
No 233
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.41 E-value=1.3e-09 Score=99.48 Aligned_cols=100 Identities=18% Similarity=0.192 Sum_probs=72.4
Q ss_pred EEc--CCCCEEEEEeecCCeEEEEeCCCC----eeeeccc------c-cccceEEEEECCCCCeEEEEEcC------CcE
Q 007229 154 EFK--PTRPFRIATCGEDFLVNFYEGPPF----KFKLSHR------E-HSNFVNCIRFSPDGSKLISVSSD------RKG 214 (612)
Q Consensus 154 ~~~--~~~~~~l~~~~~d~~i~~wd~~~~----~~~~~~~------~-~~~~v~~~~~s~~~~~l~~~~~d------g~i 214 (612)
.++ ++++++++.+..++.|.++|+.+. +...++. . .......+..+|+| .++++..+ +.+
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v 166 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGI 166 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeE
Confidence 346 889999999999999999998755 4555442 0 11245677889999 66666555 789
Q ss_pred EEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEe
Q 007229 215 LIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVS 254 (612)
Q Consensus 215 ~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~ 254 (612)
.++|.++++.+..+........--..+.|+|+++.+++..
T Consensus 167 ~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~ 206 (462)
T 2ece_A 167 LMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSE 206 (462)
T ss_dssp EEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECB
T ss_pred EEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEcc
Confidence 9999999999998853222223344688899999888763
No 234
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=99.41 E-value=3e-07 Score=91.00 Aligned_cols=482 Identities=9% Similarity=-0.040 Sum_probs=266.0
Q ss_pred CCEEEEecCCEEEEEeCCCCceeeEec-cCCCceEEEEECCCCCEEEEe-eCcCeEEEeecCCCceeeeeeeecCCCeEE
Q 007229 30 TDTILYCNGRSVLIRYLDKPLHVEFYG-EHGYPVTVARYSPNGEWIASA-DVSGSVRIWGTHNGFVLKNEFKVLSGRIDD 107 (612)
Q Consensus 30 ~~~l~~~~~~~i~i~~~~~~~~~~~~~-~h~~~v~~~~~s~d~~~las~-~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~ 107 (612)
..+|+++..+.|+..++++......+. ..-..+..++|++++..|..+ ..++.|..+++.... ....+.........
T Consensus 6 ~~~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~-~~~v~~~g~~~P~G 84 (628)
T 4a0p_A 6 EAFLLFSRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSA-LEHVVEFGLDYPEG 84 (628)
T ss_dssp CCEEEEEETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECSSCSCCCE
T ss_pred CcEEEEEeCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCC-cEEEEeCCCCCcce
Confidence 347888888999999998765433322 233567899999976665544 467889999987654 22233322346778
Q ss_pred EEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEe-ecCCeEEEEeCCCCeeeecc
Q 007229 108 LQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATC-GEDFLVNFYEGPPFKFKLSH 186 (612)
Q Consensus 108 ~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~d~~i~~wd~~~~~~~~~~ 186 (612)
+++.+.+..|..+..... .|.+...+.......+.........+++.|...++..+- +..+.|...++.........
T Consensus 85 lAvD~~~~~LY~tD~~~~--~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~ 162 (628)
T 4a0p_A 85 MAVDWLGKNLYWADTGTN--RIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLV 162 (628)
T ss_dssp EEEETTTTEEEEEETTTT--EEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE
T ss_pred EEEEeCCCEEEEEECCCC--EEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEE
Confidence 999888777777665443 345555443322222234445678999999766555554 33567887877644332222
Q ss_pred cccccceEEEEECCCCCeEEEEEc-CCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEee
Q 007229 187 REHSNFVNCIRFSPDGSKLISVSS-DRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEIL 265 (612)
Q Consensus 187 ~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~ 265 (612)
..-.....++++++++.|+.+.. .+.|...|+..... ..+. ........+++.. +..+++-...+.|...|.
T Consensus 163 -~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~---~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk- 235 (628)
T 4a0p_A 163 -PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIA---DDLPHPFGLTQYQ-DYIYWTDWSRRSIERANK- 235 (628)
T ss_dssp -CSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEE---ECCSCEEEEEEET-TEEEEEETTTTEEEEEET-
T ss_pred -CCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEee---ccCCCceEEEEEC-CEEEEecCCCCEEEEEEC-
Confidence 23456889999998887777654 57788999865444 3332 2233456788764 444444434677777775
Q ss_pred cCCCCCeeEeeeeccC-------------c------cc------------c-ceeeeeeec------c------CCEEEE
Q 007229 266 EDGSGGRVIKTFASST-------------S------NA------------V-EDMLVGCLW------Q------NDHLIT 301 (612)
Q Consensus 266 ~~~~~~~~~~~~~~~~-------------~------~~------------~-~~~~~~~~~------~------~~~~~~ 301 (612)
.+++....+.... . .. . ....+.|.. + ...++.
T Consensus 236 ---~tg~~~~~l~~~~~~p~~i~v~~~~~q~~~n~C~~~ng~C~~~C~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~Ll 312 (628)
T 4a0p_A 236 ---TSGQNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLL 312 (628)
T ss_dssp ---TTCCSCEEEECSCCSCCEEEEECGGGSCCCCTTTTTGGGCSSEEEEETTTEEEEECSTTCEECTTSSCEECCSSEEE
T ss_pred ---CCCCceEEEecCCCCcceeeeeeecccccceEeccCCCCcchhhhcCCCCCeeEEcCCCcEecccCCcCccccceee
Confidence 2332211111100 0 00 0 000011100 0 112233
Q ss_pred EEcCCEEEEEEcCCCCCCceeecC-cccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeecee------cccceE
Q 007229 302 VSLGGIISIFSASNLDKAPLSFSG-HVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKK------YDARIK 374 (612)
Q Consensus 302 ~~~~~~i~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~------~~~~i~ 374 (612)
.+....|+-..+.........+.. ....+..+.+...++.++.+-...+.|+.++............ ....+.
T Consensus 313 ~s~~~~i~~i~l~~~~~~~~~l~~~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~ 392 (628)
T 4a0p_A 313 FSQKSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPY 392 (628)
T ss_dssp EEETTEEEEECCCTTCCCCEECCCTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEE
T ss_pred eeccceEEEEecccccCceEEEEehhcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcc
Confidence 334455555554432221112221 2245667777744455666666678888888765443222221 223566
Q ss_pred EEEee---ccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccc
Q 007229 375 CLAAV---EEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGF 451 (612)
Q Consensus 375 ~~~~~---~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (612)
.++++ ++..++-+..+.|.+.++...... .+. ...-.
T Consensus 393 glAvD~~~~nLY~td~~~~~I~v~~~~G~~~~--------------------------------~l~--------~~~l~ 432 (628)
T 4a0p_A 393 DLSIDIYSRYIYWTCEATNVINVTRLDGRSVG--------------------------------VVL--------KGEQD 432 (628)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSCEEE--------------------------------EEE--------ECTTC
T ss_pred eEEeeccCCeEEEEcCCCCEEEEEECCCCeEE--------------------------------EEE--------eCCCC
Confidence 77773 334455566667777665432100 000 00113
Q ss_pred eEEEEEEccCCCeEEEEec-CC--eEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEc-CCCeEEEEecCCcc
Q 007229 452 TVTACAIAPDGSEAIVGGQ-NG--KLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASAD-GNREAIVWDRVSKE 527 (612)
Q Consensus 452 ~i~~~~~s~~~~~l~~~~~-dg--~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~d~~i~iwd~~~~~ 527 (612)
....+++.|...+|+.... .. .|...+++.... .......-...+.|++.++++.|..+. ..+.|...++....
T Consensus 433 ~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~--~~l~~~~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~~ 510 (628)
T 4a0p_A 433 RPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTER--EVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGAN 510 (628)
T ss_dssp CEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSC--EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred ceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCc--EEEEeccCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCCc
Confidence 4788999985444444332 22 577777765443 112222234568999999876666554 46889999986654
Q ss_pred eeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEccC
Q 007229 528 VKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGK 568 (612)
Q Consensus 528 ~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~ 568 (612)
.. ............++... +.+..+-...+.|...|..+
T Consensus 511 r~-~~~~~~~~~P~glav~~-~~ly~tD~~~~~i~~~~k~~ 549 (628)
T 4a0p_A 511 RI-VLEDSNILQPVGLTVFE-NWLYWIDKQQQMIEKIDMTG 549 (628)
T ss_dssp CE-EEECSSCSCEEEEEEET-TEEEEEETTTTEEEEEETTS
T ss_pred eE-EEEcCCCCCcEEEEEEC-CEEEEEECCCCeEEEEECcC
Confidence 32 22222233456777654 44444444566777777665
No 235
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.39 E-value=3.2e-10 Score=102.71 Aligned_cols=231 Identities=10% Similarity=0.016 Sum_probs=147.1
Q ss_pred ceeeEeccCCCceEEEEECCCCC-EEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeee
Q 007229 50 LHVEFYGEHGYPVTVARYSPNGE-WIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSF 128 (612)
Q Consensus 50 ~~~~~~~~h~~~v~~~~~s~d~~-~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~ 128 (612)
..+..+..+.......+|+|+|+ ++++...++.|..|+. +++ ...+..+...+..++++++|+.+++.....
T Consensus 35 ~~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~--~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~---- 107 (305)
T 3dr2_A 35 ARLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT--VDVLLDATAFTNGNAVDAQQRLVHCEHGRR---- 107 (305)
T ss_dssp CCCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC--EEEEEESCSCEEEEEECTTSCEEEEETTTT----
T ss_pred CceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC--EEEEeCCCCccceeeECCCCCEEEEECCCC----
Confidence 34444555667788999999998 5667777899999998 443 235556677899999999998665543333
Q ss_pred EEEEEecC-CceeeeeccC-----CceEEEEEEcCCCCEEEEE----eec-------------CCeEEEEeCCCCeeeec
Q 007229 129 VRAFMWDS-GTTVGDFDGH-----SRRVLSCEFKPTRPFRIAT----CGE-------------DFLVNFYEGPPFKFKLS 185 (612)
Q Consensus 129 i~i~~~~~-~~~~~~~~~~-----~~~v~~~~~~~~~~~~l~~----~~~-------------d~~i~~wd~~~~~~~~~ 185 (612)
.|..++. ++ +..+..+ ...+..+++.|+|. +.++ |.. .+.|..+|..+++....
T Consensus 108 -~v~~~~~~g~-~~~~~~~~~~~~~~~~~~i~~d~dG~-l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~ 184 (305)
T 3dr2_A 108 -AITRSDADGQ-AHLLVGRYAGKRLNSPNDLIVARDGA-IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRM 184 (305)
T ss_dssp -EEEEECTTSC-EEEEECEETTEECSCCCCEEECTTSC-EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEE
T ss_pred -EEEEECCCCC-EEEEEeccCCCccCCCCCEEECCCCC-EEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEE
Confidence 2444542 43 3222211 13466799999998 5665 332 35688888766665433
Q ss_pred ccccccceEEEEECCCCCeEEEEEcC------CcEEEEecCCCCeeeeeec-cCCccccEEEEEEecCCCEEEEEeCCCc
Q 007229 186 HREHSNFVNCIRFSPDGSKLISVSSD------RKGLIYDGKSGEKIGEFSS-EDGHHGSIYAVSWSPDGKKVLTVSADKS 258 (612)
Q Consensus 186 ~~~~~~~v~~~~~s~~~~~l~~~~~d------g~i~vwd~~~~~~~~~~~~-~~~~~~~v~~i~~~~~~~~l~~~~~dg~ 258 (612)
. .......++|+||++.|+.+... +.|.+|++..+. +..... ..........+++.++|++. ++..+ .
T Consensus 185 ~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~~d~~G~lw-v~~~~-g 259 (305)
T 3dr2_A 185 A--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFCVDRGGWLW-SSSGT-G 259 (305)
T ss_dssp E--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEEECTTSCEE-ECCSS-E
T ss_pred e--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEEECCCCCEE-EecCC-c
Confidence 3 34557889999999988877665 689999987654 211100 01123345578899999844 44444 4
Q ss_pred EEEEEeecCCCCCeeEeeeeccCccccceeeeeeec--cCCEEEEEEcCC
Q 007229 259 AKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLW--QNDHLITVSLGG 306 (612)
Q Consensus 259 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 306 (612)
|.+|+. .++.+..+.... ....+.+ +++.+++++.++
T Consensus 260 v~~~~~-----~g~~~~~~~~~~------~~~~~~f~~d~~~L~it~~~~ 298 (305)
T 3dr2_A 260 VCVFDS-----DGQLLGHIPTPG------TASNCTFDQAQQRLFITGGPC 298 (305)
T ss_dssp EEEECT-----TSCEEEEEECSS------CCCEEEECTTSCEEEEEETTE
T ss_pred EEEECC-----CCCEEEEEECCC------ceeEEEEeCCCCEEEEEcCCe
Confidence 888885 566666665543 1223333 355677666643
No 236
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.38 E-value=9.9e-10 Score=110.36 Aligned_cols=195 Identities=9% Similarity=0.013 Sum_probs=122.5
Q ss_pred CCEEEEeeCcCeEEEeecCCCceeeeeeeecCC-----------CeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCce
Q 007229 71 GEWIASADVSGSVRIWGTHNGFVLKNEFKVLSG-----------RIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTT 139 (612)
Q Consensus 71 ~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~-----------~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~ 139 (612)
+..|..++.++.|.-+|..+++.+.+ +..... ....+++ ++..+++++.++ .+..++..+|+.
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~-~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg---~l~alD~~tG~~ 150 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWT-YDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDG---RLIALDAATGKE 150 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEE-ECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTS---EEEEEETTTCCE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEE-EcCCCCccccccccccCCCCCceE--ECCEEEEEcCCC---EEEEEECCCCCE
Confidence 44666667788999999999986432 221110 0012222 456777776665 355666668999
Q ss_pred eeeeccC-C----ceEEEEEEcCCCCEEEEEeec------CCeEEEEeCCCCeeeeccccccc-----------------
Q 007229 140 VGDFDGH-S----RRVLSCEFKPTRPFRIATCGE------DFLVNFYEGPPFKFKLSHREHSN----------------- 191 (612)
Q Consensus 140 ~~~~~~~-~----~~v~~~~~~~~~~~~l~~~~~------d~~i~~wd~~~~~~~~~~~~~~~----------------- 191 (612)
+..+..+ . ..+...-...++ .++.++. ++.|+.+|..+++.+..+.....
T Consensus 151 ~W~~~~~~~~~~~~~~~~~p~v~~~--~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~ 228 (677)
T 1kb0_A 151 VWHQNTFEGQKGSLTITGAPRVFKG--KVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAART 228 (677)
T ss_dssp EEEEETTTTCCSSCBCCSCCEEETT--EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTT
T ss_pred EeeecCCcCcCcCcccccCcEEECC--EEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccccccccccc
Confidence 8888755 2 112111111133 3555543 79999999999998876542211
Q ss_pred ---------------ceEEEEECCCCCeEEEEEcCC-------------------cEEEEecCCCCeeeeeeccCCcc--
Q 007229 192 ---------------FVNCIRFSPDGSKLISVSSDR-------------------KGLIYDGKSGEKIGEFSSEDGHH-- 235 (612)
Q Consensus 192 ---------------~v~~~~~s~~~~~l~~~~~dg-------------------~i~vwd~~~~~~~~~~~~~~~~~-- 235 (612)
....++++|++..++.++.++ .|..+|.++|+.+..+... .|.
T Consensus 229 w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~-~~d~w 307 (677)
T 1kb0_A 229 WDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQET-PGDNW 307 (677)
T ss_dssp SCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESS-TTCCS
T ss_pred ccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecC-CCccc
Confidence 113578889988888887664 4999999999998877432 121
Q ss_pred -----ccEEEEEEecCC---CEEEEEeCCCcEEEEEeecCCCCCeeEeeee
Q 007229 236 -----GSIYAVSWSPDG---KKVLTVSADKSAKVWEILEDGSGGRVIKTFA 278 (612)
Q Consensus 236 -----~~v~~i~~~~~~---~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 278 (612)
....-+....+| +.++.++.+|.+.++|. .+++.+..+.
T Consensus 308 d~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~----~tG~~l~~~~ 354 (677)
T 1kb0_A 308 DYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDR----TNGKFISAKN 354 (677)
T ss_dssp CCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEET----TTCCEEEEEE
T ss_pred ccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEEC----CCCCEecccc
Confidence 122223344467 67888888899999998 7787776554
No 237
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.36 E-value=7.2e-10 Score=101.27 Aligned_cols=185 Identities=14% Similarity=0.096 Sum_probs=126.9
Q ss_pred CceeEEEEccCCCEEEEecCCEEEEEeCCCCceeeEecc---C-CCceEEEEECCCCCEEEEeeC------cCeEEEeec
Q 007229 19 GRGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGE---H-GYPVTVARYSPNGEWIASADV------SGSVRIWGT 88 (612)
Q Consensus 19 ~~v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~~~~---h-~~~v~~~~~s~d~~~las~~~------d~~i~iwd~ 88 (612)
..+.+++++|||+++++. .+.|.+||.++++....... + ...+..++++|+|+++++... .+.|..++
T Consensus 90 ~~v~~i~~~~dg~l~v~~-~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~- 167 (326)
T 2ghs_A 90 FMGSALAKISDSKQLIAS-DDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA- 167 (326)
T ss_dssp SCEEEEEEEETTEEEEEE-TTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE-
T ss_pred CcceEEEEeCCCeEEEEE-CCCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe-
Confidence 478899999999987766 45599999988876543221 1 246899999999997776542 23455555
Q ss_pred CCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec--CC-c-----eeeeeccCCceEEEEEEcCCCC
Q 007229 89 HNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD--SG-T-----TVGDFDGHSRRVLSCEFKPTRP 160 (612)
Q Consensus 89 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~--~~-~-----~~~~~~~~~~~v~~~~~~~~~~ 160 (612)
+++ .. .+..+......++|+||++.|+.+..... .+.++..+ ++ + ....+......+..+++.++|.
T Consensus 168 -~g~-~~-~~~~~~~~~~~i~~s~dg~~lyv~~~~~~--~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~ 242 (326)
T 2ghs_A 168 -KGK-VT-KLFADISIPNSICFSPDGTTGYFVDTKVN--RLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGH 242 (326)
T ss_dssp -TTE-EE-EEEEEESSEEEEEECTTSCEEEEEETTTC--EEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSC
T ss_pred -CCc-EE-EeeCCCcccCCeEEcCCCCEEEEEECCCC--EEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCC
Confidence 443 32 23334456789999999998877655433 34555554 44 2 1223344456778999999997
Q ss_pred EEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEEC-CCCCeEEEEEcCC
Q 007229 161 FRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFS-PDGSKLISVSSDR 212 (612)
Q Consensus 161 ~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~dg 212 (612)
+.++...++.|..||. +++.+..+..+...+.+++|+ |+++.|++++..+
T Consensus 243 -lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~~ 293 (326)
T 2ghs_A 243 -IWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSARE 293 (326)
T ss_dssp -EEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBCT
T ss_pred -EEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCCCEEEEEecCC
Confidence 4666656688999998 566666666666779999998 8888776665543
No 238
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.36 E-value=4.7e-10 Score=112.74 Aligned_cols=333 Identities=12% Similarity=0.074 Sum_probs=182.1
Q ss_pred CCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccc--------cEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCee
Q 007229 202 GSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHG--------SIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRV 273 (612)
Q Consensus 202 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~--------~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 273 (612)
+..|++++.++.|.-+|..+|+.+-.+........ ....+++ ++..+++++.|+.|..+|. .+++.
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~----~tG~~ 150 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDA----ATGKE 150 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEET----TTCCE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEEC----CCCCE
Confidence 45677788889999999999999887743211000 0112333 3567888889999999999 89999
Q ss_pred Eeeeecc-CccccceeeeeeeccCCEEEEEEc------CCEEEEEEcCCCCCCceeecCcc-------------------
Q 007229 274 IKTFASS-TSNAVEDMLVGCLWQNDHLITVSL------GGIISIFSASNLDKAPLSFSGHV------------------- 327 (612)
Q Consensus 274 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~~~~~~~~~------------------- 327 (612)
+-.+... ...............++.++++.. ++.|..+|..+.+..........
T Consensus 151 ~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~ 230 (677)
T 1kb0_A 151 VWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWD 230 (677)
T ss_dssp EEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSC
T ss_pred EeeecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccccccccccccc
Confidence 8887764 211111111122223667777764 68899999776554322211100
Q ss_pred ------------cceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEE
Q 007229 328 ------------KNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRV 395 (612)
Q Consensus 328 ------------~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~ 395 (612)
.....+++. .+...++.+..++.. |...... .+ .++.++ .+.|..+
T Consensus 231 ~~g~~~~~~~g~~~w~~~~~d-~~~~~vy~~~~~~~~--w~~~~~~----------~~-----~gd~~~----~~sv~Al 288 (677)
T 1kb0_A 231 PSGKWWEAGGGGTMWDSMTFD-AELNTMYVGTGNGSP--WSHKVRS----------PK-----GGDNLY----LASIVAL 288 (677)
T ss_dssp GGGCHHHHCEECCCCSCEEEE-TTTTEEEEECCCEES--SCHHHHS----------TT-----CCCCTT----TTEEEEE
T ss_pred ccCceeEeCCCcccccceeEc-CCCCEEEEECCCCcc--ccCCCCC----------cc-----CCCCee----eEEEEEE
Confidence 001123333 225566655554322 2110000 00 000000 0122223
Q ss_pred ecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCC---CeEEEEecCC
Q 007229 396 PLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDG---SEAIVGGQNG 472 (612)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~---~~l~~~~~dg 472 (612)
|..+++........ ...............+....+| +.++.++.+|
T Consensus 289 D~~TG~~~W~~~~~-------------------------------~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G 337 (677)
T 1kb0_A 289 DPDTGKYKWHYQET-------------------------------PGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNG 337 (677)
T ss_dssp CTTTCCEEEEEESS-------------------------------TTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTS
T ss_pred ECCCCCEEEEEecC-------------------------------CCcccccccCCCcEEEecccCCcEeeEEEEECCCC
Confidence 33222211000000 0000000000112223333467 6788999999
Q ss_pred eEEEEEccCcccccceeecc---------ccCce------------------------EEEEEcCCCcEEEEEcC-----
Q 007229 473 KLHIYSISGNTLTEEMVLEK---------HRGAI------------------------TVIQYSPDVSMFASADG----- 514 (612)
Q Consensus 473 ~v~i~d~~~~~~~~~~~~~~---------~~~~i------------------------~~~~~s~~~~~l~~~~~----- 514 (612)
.++++|..++++.....+.. ...++ ..++|+|+..++++...
T Consensus 338 ~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~ 417 (677)
T 1kb0_A 338 FFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVN 417 (677)
T ss_dssp EEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCE
T ss_pred EEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhccee
Confidence 99999999988632222110 00011 25788998888776532
Q ss_pred --------------------------------------CCeEEEEecCCcceeeecccccccceeEEEecCCCcEEEEee
Q 007229 515 --------------------------------------NREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGS 556 (612)
Q Consensus 515 --------------------------------------d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~ 556 (612)
.|.|..||+.+++.+.... +..++....++.++.+++.++
T Consensus 418 ~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~--~~~~~~~g~~~~~g~~v~~g~ 495 (677)
T 1kb0_A 418 LMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE--HVSPWNGGTLTTAGNVVFQGT 495 (677)
T ss_dssp EEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEE--ESSSCCCCEEEETTTEEEEEC
T ss_pred eecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecC--CCCCCcCcceEeCCCEEEEEC
Confidence 2789999999999875532 344556666777888899999
Q ss_pred cCcEEEEEEccCCCcceeeeec-ccccCeeeEEEe-cCceEEE
Q 007229 557 IDTCVIIYEIGKPASSRITIKN-AHLGGVYGVAFM-DDFNVVS 597 (612)
Q Consensus 557 ~d~~i~iwd~~~~~~~~~~~~~-~h~~~v~~~~~~-~~~~l~s 597 (612)
.|+.+++||..+ + +.+..+. ++.....-+.|. +++.+++
T Consensus 496 ~dg~l~a~D~~t-G-~~lw~~~~~~~~~~~p~~y~~~G~~~v~ 536 (677)
T 1kb0_A 496 ADGRLVAYHAAT-G-EKLWEAPTGTGVVAAPSTYMVDGRQYVS 536 (677)
T ss_dssp TTSEEEEEETTT-C-CEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred CCCcEEEEECCC-C-ceeeeeeCCCCcccCCEEEEeCCEEEEE
Confidence 999999999999 5 5555554 333344556676 7765443
No 239
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.36 E-value=3.1e-11 Score=111.29 Aligned_cols=302 Identities=12% Similarity=0.020 Sum_probs=187.2
Q ss_pred eEEEEccCCCEEEEecCCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeec
Q 007229 22 ILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVL 101 (612)
Q Consensus 22 ~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~ 101 (612)
.++.+..+|...+...++.|..|| .+++.......+...+.++...++|.+.+ ++.+ |..+|. +++.+. .....
T Consensus 23 ~~~~~d~~g~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v-~t~~--l~~~d~-~g~~~~-~~~~~ 96 (330)
T 3hxj_A 23 SSPILAKNGTIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGTIYF-GSDK--VYAINP-DGTEKW-RFDTK 96 (330)
T ss_dssp CCCEECTTSCEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTEECC-SSCE--EEEECC-CGGGGG-GSCC-
T ss_pred cCceEccCCeEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCcEEE-ecCc--EEEECC-CCcEEE-EEECC
Confidence 345566677655544578899999 88887665555556678888888886444 4444 888886 444222 22222
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCe
Q 007229 102 SGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFK 181 (612)
Q Consensus 102 ~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~ 181 (612)
........+. +..|..++.++ .+..++.+ ++.......+...+.++...+++. +..++.++.|..+|.. ++
T Consensus 97 ~~~~~~~~~~--~~~l~v~t~~~---~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~--l~vgt~~~~l~~~d~~-g~ 167 (330)
T 3hxj_A 97 KAIVSDFTIF--EDILYVTSMDG---HLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT--IYVGSNDNYLYAINPD-GT 167 (330)
T ss_dssp ----CCEEEE--TTEEEEECTTS---EEEEECTT-SCEEEEEECSSCCCSCCEECTTSC--EEEECTTSEEEEECTT-SC
T ss_pred CCcccCceEE--CCEEEEEecCC---EEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE--EEEEcCCCEEEEECCC-CC
Confidence 2222222232 44555555544 23333333 666666666666667777777775 6667888999999998 77
Q ss_pred eeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEE
Q 007229 182 FKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKV 261 (612)
Q Consensus 182 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i 261 (612)
....+......+.++...+++... .++ +.+..+| .+++...... .....+.++...++|. +..++.++.+..
T Consensus 168 ~~~~~~~~~~~~~~~~~d~~g~l~-v~t--~~l~~~d-~~g~~~~~~~---~~~~~~~~~~~~~~g~-l~v~t~~~gl~~ 239 (330)
T 3hxj_A 168 EKWRFKTNDAITSAASIGKDGTIY-FGS--DKVYAIN-PDGTEKWNFY---AGYWTVTRPAISEDGT-IYVTSLDGHLYA 239 (330)
T ss_dssp EEEEEECSSCCCSCCEECTTCCEE-EES--SSEEEEC-TTSCEEEEEC---CSSCCCSCCEECTTSC-EEEEETTTEEEE
T ss_pred EeEEEecCCCceeeeEEcCCCEEE-EEe--CEEEEEC-CCCcEEEEEc---cCCcceeceEECCCCe-EEEEcCCCeEEE
Confidence 766665555667788887888744 445 8899999 7777776662 3335577788888775 555667788888
Q ss_pred EEeecCCCCCeeEeeeeccCccccceeeeeeecc-CCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCC
Q 007229 262 WEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQ-NDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQ 340 (612)
Q Consensus 262 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 340 (612)
++. +++.+..+..... ........ ++.+.+++.+|.+..++. . ......+......+.++.... +
T Consensus 240 ~~~-----~g~~~~~~~~~~~-----~~~~~~~~~~g~l~v~t~~ggl~~~d~-~-g~~~~~~~~~~~~~~~~~~d~--~ 305 (330)
T 3hxj_A 240 INP-----DGTEKWRFKTGKR-----IESSPVIGNTDTIYFGSYDGHLYAINP-D-GTEKWNFETGSWIIATPVIDE--N 305 (330)
T ss_dssp ECT-----TSCEEEEEECSSC-----CCSCCEECTTSCEEEECTTCEEEEECT-T-SCEEEEEECSSCCCSCCEECT--T
T ss_pred ECC-----CCCEeEEeeCCCC-----ccccceEcCCCeEEEecCCCCEEEECC-C-CcEEEEEEcCCccccceEEcC--C
Confidence 864 4555555443321 11122223 778999999999999984 3 333333333334445554433 4
Q ss_pred cEEEEEecCCcEEEEEcCCc
Q 007229 341 QTILSSSYDGAIIKWIRGVG 360 (612)
Q Consensus 341 ~~l~~~~~dg~i~~wd~~~~ 360 (612)
..+..++.+|.+++...+..
T Consensus 306 g~l~~gt~~G~~~~~~~~~~ 325 (330)
T 3hxj_A 306 GTIYFGTRNGKFYALFNLEH 325 (330)
T ss_dssp CCEEEECTTSCEEEEEC---
T ss_pred CEEEEEcCCCeEEEEecccc
Confidence 56777888999888766543
No 240
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.33 E-value=8.7e-10 Score=111.02 Aligned_cols=305 Identities=11% Similarity=0.009 Sum_probs=183.2
Q ss_pred CCEEEEec-CCEEEEEeCCCCceeeEeccCCCc----------e-EEEEECCCCCEEEEeeCcCeEEEeecCCCceeeee
Q 007229 30 TDTILYCN-GRSVLIRYLDKPLHVEFYGEHGYP----------V-TVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNE 97 (612)
Q Consensus 30 ~~~l~~~~-~~~i~i~~~~~~~~~~~~~~h~~~----------v-~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~ 97 (612)
+..+++++ ++.|+-+|.++|+.+=.+..+... + ..+++ ++..|+.++.|+.|..+|..+++.+...
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~ 147 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSV 147 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence 44455554 789999999999987665433211 1 11222 4567888889999999999999865433
Q ss_pred eee-cCCCeEEEEECC---CCCEEEEEeCCC---CeeeEEEEEecCCceeeeeccCC-----------------------
Q 007229 98 FKV-LSGRIDDLQWSP---DGLRIVACGDGK---GKSFVRAFMWDSGTTVGDFDGHS----------------------- 147 (612)
Q Consensus 98 ~~~-~~~~i~~~~~s~---~~~~l~~~~~~~---~~~~i~i~~~~~~~~~~~~~~~~----------------------- 147 (612)
... +......+..+| ++.. +++.... ....+..++..+|+.+..+....
T Consensus 148 ~~~~~~~~~~~~~~sP~v~~g~v-~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ 226 (689)
T 1yiq_A 148 DTRADHKRSYTITGAPRVVNGKV-VIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDA 226 (689)
T ss_dssp ECCSCTTSCCBCCSCCEEETTEE-EECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSST
T ss_pred cCcCCCCCCccccCCcEEECCEE-EEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCce
Confidence 222 211111222233 4444 3333210 11146666667899887764210
Q ss_pred --------ceEEEEEEcCCCCEEEEEeecCCe-------------------EEEEeCCCCeeeecccc--cc-------c
Q 007229 148 --------RRVLSCEFKPTRPFRIATCGEDFL-------------------VNFYEGPPFKFKLSHRE--HS-------N 191 (612)
Q Consensus 148 --------~~v~~~~~~~~~~~~l~~~~~d~~-------------------i~~wd~~~~~~~~~~~~--~~-------~ 191 (612)
.....++++|++. +++.+..++. |..+|..+++.+..++. |. .
T Consensus 227 w~~~~~g~~~w~~~~~d~~~~-~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~ 305 (689)
T 1yiq_A 227 YVEQGGGGTAWDSFAYDPELN-LLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQ 305 (689)
T ss_dssp HHHHCEECCCCSCEEEETTTT-EEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCS
T ss_pred eeecCCCCccccceeEcCCCC-EEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCC
Confidence 0112578889888 5888877763 99999999999887653 21 1
Q ss_pred ceEEEEECCCCC---eEEEEEcCCcEEEEecCCCCeeeeeeccC-------------------------Cccc-------
Q 007229 192 FVNCIRFSPDGS---KLISVSSDRKGLIYDGKSGEKIGEFSSED-------------------------GHHG------- 236 (612)
Q Consensus 192 ~v~~~~~s~~~~---~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-------------------------~~~~------- 236 (612)
+........+|+ .++.++.+|.++++|.++|+.+....... ....
T Consensus 306 ~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~ 385 (689)
T 1yiq_A 306 HMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAF 385 (689)
T ss_dssp CEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCT
T ss_pred CcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCc
Confidence 222222223565 78889999999999999999875432110 0000
Q ss_pred ----cEEEEEEecCCCEEEEEeC---------------------------------------------CCcEEEEEeecC
Q 007229 237 ----SIYAVSWSPDGKKVLTVSA---------------------------------------------DKSAKVWEILED 267 (612)
Q Consensus 237 ----~v~~i~~~~~~~~l~~~~~---------------------------------------------dg~i~iw~~~~~ 267 (612)
.-..++|+|+..++++... +|.|..||+
T Consensus 386 ~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~--- 462 (689)
T 1yiq_A 386 WGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDP--- 462 (689)
T ss_dssp TCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEET---
T ss_pred ccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEEC---
Confidence 0112688998887776532 367899999
Q ss_pred CCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEE
Q 007229 268 GSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSS 346 (612)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 346 (612)
.+++.+-.+...... .. ..+...++.++.++.+|.++.||..+.+.......++......+.+......++++.
T Consensus 463 -~tG~~~W~~~~~~~~--~~--g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~~~ 536 (689)
T 1yiq_A 463 -VKQQAAWEVPYVTIF--NG--GTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVTFM 536 (689)
T ss_dssp -TTTEEEEEEEESSSC--CC--CEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred -CCCCeEeEccCCCCc--cC--ccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEEEE
Confidence 888888777654321 11 123335789999999999999997776554333333333333455543223344443
No 241
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.31 E-value=1.4e-09 Score=109.49 Aligned_cols=112 Identities=12% Similarity=0.098 Sum_probs=71.0
Q ss_pred CCeEEEEEcCCcEEEEecCCCCeeeeeeccCCcc-------ccE-EEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCee
Q 007229 202 GSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHH-------GSI-YAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRV 273 (612)
Q Consensus 202 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~-------~~v-~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 273 (612)
+..|++++.++.|.-+|..+|+.+-.+....... ..+ ..++. .+..+++++.|+.|..+|. .+++.
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa----~TG~~ 143 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDA----KTGQR 143 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEET----TTCCE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEEC----CCCCE
Confidence 5578888889999999999999988874211100 000 11222 3556888889999999999 89999
Q ss_pred Eeeeecc-CccccceeeeeeeccCCEEEEEEc------CCEEEEEEcCCCCCC
Q 007229 274 IKTFASS-TSNAVEDMLVGCLWQNDHLITVSL------GGIISIFSASNLDKA 319 (612)
Q Consensus 274 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~ 319 (612)
+-.+... ..........+....++.++++.. ++.+..||..+....
T Consensus 144 ~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~ 196 (689)
T 1yiq_A 144 AWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEA 196 (689)
T ss_dssp EEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEE
T ss_pred eeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEE
Confidence 8777654 211111111112223666766653 588999997766543
No 242
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.27 E-value=1.3e-08 Score=90.20 Aligned_cols=237 Identities=12% Similarity=0.032 Sum_probs=147.8
Q ss_pred CCEEEEecCCEEEEEeCCCCcee-----eEeccCCCceEEEEECCCCCEEEEe-eCcCeEEEeecCCCceeeeeeeecCC
Q 007229 30 TDTILYCNGRSVLIRYLDKPLHV-----EFYGEHGYPVTVARYSPNGEWIASA-DVSGSVRIWGTHNGFVLKNEFKVLSG 103 (612)
Q Consensus 30 ~~~l~~~~~~~i~i~~~~~~~~~-----~~~~~h~~~v~~~~~s~d~~~las~-~~d~~i~iwd~~~~~~~~~~~~~~~~ 103 (612)
|++|.++..+.|+.++++..... ..+......+..++|+++++.|..+ ..++.|.+++..... ..........
T Consensus 1 ~~~l~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~-~~~~~~~~~~ 79 (267)
T 1npe_A 1 GTHLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE-PTTIIRQDLG 79 (267)
T ss_dssp CEEEEEEEEEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCC-CEEEECTTCC
T ss_pred CcEEEEEcCCeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCC-cEEEEECCCC
Confidence 45677777778999998865431 1222233567899999976655544 457899999998764 2222222235
Q ss_pred CeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeec--CCeEEEEeCCCCe
Q 007229 104 RIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGE--DFLVNFYEGPPFK 181 (612)
Q Consensus 104 ~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--d~~i~~wd~~~~~ 181 (612)
....+++.|++..|..+..... .+.++..+.................++++|++.++.++... .+.|..+++....
T Consensus 80 ~p~~ia~d~~~~~lyv~d~~~~--~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~ 157 (267)
T 1npe_A 80 SPEGIALDHLGRTIFWTDSQLD--RIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN 157 (267)
T ss_dssp CEEEEEEETTTTEEEEEETTTT--EEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC
T ss_pred CccEEEEEecCCeEEEEECCCC--EEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC
Confidence 7889999998877777665543 34455554322222222222567899999976655555543 4688888875432
Q ss_pred eeecccccccceEEEEECCCCCeEEEEEc-CCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEe-CCCcE
Q 007229 182 FKLSHREHSNFVNCIRFSPDGSKLISVSS-DRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVS-ADKSA 259 (612)
Q Consensus 182 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-~dg~i 259 (612)
..............++++|+++.|+.+.. .+.|.++|+........+. . ......++.. +..++.+. ..+.|
T Consensus 158 ~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~---~-~~~P~gi~~d--~~~lyva~~~~~~v 231 (267)
T 1npe_A 158 RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLE---G-LQYPFAVTSY--GKNLYYTDWKTNSV 231 (267)
T ss_dssp CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEE---C-CCSEEEEEEE--TTEEEEEETTTTEE
T ss_pred cEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEec---C-CCCceEEEEe--CCEEEEEECCCCeE
Confidence 21111122345789999998877766654 5789999987544333331 1 2234566654 34455444 56889
Q ss_pred EEEEeecCCCCCeeEeeeec
Q 007229 260 KVWEILEDGSGGRVIKTFAS 279 (612)
Q Consensus 260 ~iw~~~~~~~~~~~~~~~~~ 279 (612)
..+|. .+++.+..+..
T Consensus 232 ~~~d~----~~g~~~~~i~~ 247 (267)
T 1npe_A 232 IAMDL----AISKEMDTFHP 247 (267)
T ss_dssp EEEET----TTTEEEEEECC
T ss_pred EEEeC----CCCCceEEEcc
Confidence 99998 77888877754
No 243
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.25 E-value=4.9e-12 Score=117.53 Aligned_cols=186 Identities=10% Similarity=0.004 Sum_probs=104.0
Q ss_pred CCCEEEEec-CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecC-CCeE
Q 007229 29 KTDTILYCN-GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLS-GRID 106 (612)
Q Consensus 29 d~~~l~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~-~~i~ 106 (612)
++..+++++ ++.|+.||.++|+.+-.+.. +.+.+..+..+++.+++++.||.|+.||..+++.+. ....+. ..+.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w-~~~~~~~~~~~ 84 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLT-KLPFTIPELVQ 84 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSE-ECSCCHHHHHT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceee-eeeccCccccc
Confidence 466677766 79999999999999877765 566666677888888888899999999999887432 222111 1111
Q ss_pred -EEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeec
Q 007229 107 -DLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLS 185 (612)
Q Consensus 107 -~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~ 185 (612)
...+. ++..+++++.++ .+..++.++|+.+..+..+. ...++|++. .+++++.|+.|+.||..+++.+..
T Consensus 85 ~sp~~~-~~~~v~~g~~dg---~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~-~v~~~~~dg~v~a~d~~tG~~~W~ 155 (369)
T 2hz6_A 85 ASPCRS-SDGILYMGKKQD---IWYVIDLLTGEKQQTLSSAF----ADSLSPSTS-LLYLGRTEYTITMYDTKTRELRWN 155 (369)
T ss_dssp TCSCC------CCCCEEEE---EEEEECCC---------------------------EEEEEEEEEEECCCSSSSSCCCE
T ss_pred cCceEe-cCCEEEEEeCCC---EEEEEECCCCcEEEEecCCC----cccccccCC-EEEEEecCCEEEEEECCCCCEEEe
Confidence 11111 344555555444 35556666898888877654 235567776 588999999999999999987766
Q ss_pred ccccccceEEEEECCCC---CeEEEEEcCCcEEEEecCCCCeeeee
Q 007229 186 HREHSNFVNCIRFSPDG---SKLISVSSDRKGLIYDGKSGEKIGEF 228 (612)
Q Consensus 186 ~~~~~~~v~~~~~s~~~---~~l~~~~~dg~i~vwd~~~~~~~~~~ 228 (612)
+..+. ....++.++. ..+++++.||.++.||..+|+.+...
T Consensus 156 ~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~ 199 (369)
T 2hz6_A 156 ATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQ 199 (369)
T ss_dssp EEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEE
T ss_pred Eeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEe
Confidence 54321 2233344432 56788899999999999999988777
No 244
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.25 E-value=2.1e-10 Score=105.67 Aligned_cols=301 Identities=11% Similarity=0.003 Sum_probs=175.9
Q ss_pred EEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeec
Q 007229 151 LSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSS 230 (612)
Q Consensus 151 ~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 230 (612)
.+..+..++. +..++.++.|..|| .+++.......+...+.++...+++. |..++.+ +..+|. +++....+.
T Consensus 23 ~~~~~d~~g~--l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~- 94 (330)
T 3hxj_A 23 SSPILAKNGT--IYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFD- 94 (330)
T ss_dssp CCCEECTTSC--EECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSC-
T ss_pred cCceEccCCe--EEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEE-
Confidence 3445556664 77788888899999 88888777665556677888877775 4445544 888885 666655542
Q ss_pred cCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeecc-CCEEEEEEcCCEEE
Q 007229 231 EDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQ-NDHLITVSLGGIIS 309 (612)
Q Consensus 231 ~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~ 309 (612)
..........+. +..+..++.++.+..+|. . ++.......... ........ ++.+++++.++.+.
T Consensus 95 --~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~----~-g~~~~~~~~~~~-----~~~~~~~~~~g~l~vgt~~~~l~ 160 (330)
T 3hxj_A 95 --TKKAIVSDFTIF--EDILYVTSMDGHLYAINT----D-GTEKWRFKTKKA-----IYATPIVSEDGTIYVGSNDNYLY 160 (330)
T ss_dssp --C-----CCEEEE--TTEEEEECTTSEEEEECT----T-SCEEEEEECSSC-----CCSCCEECTTSCEEEECTTSEEE
T ss_pred --CCCCcccCceEE--CCEEEEEecCCEEEEEcC----C-CCEEEEEcCCCc-----eeeeeEEcCCCEEEEEcCCCEEE
Confidence 111122223333 445777878889999987 5 555555443221 12222333 67788888889999
Q ss_pred EEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeec-cEEEEecC
Q 007229 310 IFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVE-EVIFTAGF 388 (612)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~-~~l~~~~~ 388 (612)
.++.. .............+..+.... +..+..++ +.+..+| .+++...........+.++..+. +.++.++.
T Consensus 161 ~~d~~--g~~~~~~~~~~~~~~~~~~d~--~g~l~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~ 233 (330)
T 3hxj_A 161 AINPD--GTEKWRFKTNDAITSAASIGK--DGTIYFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYVTSL 233 (330)
T ss_dssp EECTT--SCEEEEEECSSCCCSCCEECT--TCCEEEES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEEEET
T ss_pred EECCC--CCEeEEEecCCCceeeeEEcC--CCEEEEEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEEEcC
Confidence 99966 333333333334455554432 33455555 7888898 55444433332334556666643 36777777
Q ss_pred CCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeec-ccceEEEEEEccCCCeEEE
Q 007229 389 DNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKID-LGFTVTACAIAPDGSEAIV 467 (612)
Q Consensus 389 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~ 467 (612)
++.+..++..... ..... ....+.++.+.+++ .|.+
T Consensus 234 ~~gl~~~~~~g~~------------------------------------------~~~~~~~~~~~~~~~~~~~g-~l~v 270 (330)
T 3hxj_A 234 DGHLYAINPDGTE------------------------------------------KWRFKTGKRIESSPVIGNTD-TIYF 270 (330)
T ss_dssp TTEEEEECTTSCE------------------------------------------EEEEECSSCCCSCCEECTTS-CEEE
T ss_pred CCeEEEECCCCCE------------------------------------------eEEeeCCCCccccceEcCCC-eEEE
Confidence 7777776532111 11111 01112234455455 5677
Q ss_pred EecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcc
Q 007229 468 GGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKE 527 (612)
Q Consensus 468 ~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~ 527 (612)
++.+|.|..+|. +++. ..........+.++...+++++ ..++.+|.+++...+..+
T Consensus 271 ~t~~ggl~~~d~-~g~~--~~~~~~~~~~~~~~~~d~~g~l-~~gt~~G~~~~~~~~~~~ 326 (330)
T 3hxj_A 271 GSYDGHLYAINP-DGTE--KWNFETGSWIIATPVIDENGTI-YFGTRNGKFYALFNLEHH 326 (330)
T ss_dssp ECTTCEEEEECT-TSCE--EEEEECSSCCCSCCEECTTCCE-EEECTTSCEEEEEC----
T ss_pred ecCCCCEEEECC-CCcE--EEEEEcCCccccceEEcCCCEE-EEEcCCCeEEEEeccccc
Confidence 888888999996 4554 2333334456777777777764 557788999988765543
No 245
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.24 E-value=1.4e-08 Score=89.81 Aligned_cols=222 Identities=7% Similarity=-0.063 Sum_probs=145.0
Q ss_pred ceeEEEEccCCCEEEEec--CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEE-eeCcCeEEEeecCCCceeee
Q 007229 20 RGILISGNPKTDTILYCN--GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIAS-ADVSGSVRIWGTHNGFVLKN 96 (612)
Q Consensus 20 ~v~~~~~s~d~~~l~~~~--~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las-~~~d~~i~iwd~~~~~~~~~ 96 (612)
.+..++++|+++.|.++. ++.|..+++++......+...-.....++++|++..|.. -...+.|.+++..... ...
T Consensus 37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~-~~~ 115 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ-RRV 115 (267)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEE
T ss_pred cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCC-EEE
Confidence 467899999888887776 589999999876654444333357889999997655554 4556789999987543 221
Q ss_pred eeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeee-ccCCceEEEEEEcCCCCEEEEEeecCCeEEEE
Q 007229 97 EFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDF-DGHSRRVLSCEFKPTRPFRIATCGEDFLVNFY 175 (612)
Q Consensus 97 ~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~w 175 (612)
...........++++|++..|..+........|..+..+ ++....+ .........++++|++.++.++....+.|..+
T Consensus 116 ~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~d-g~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~ 194 (267)
T 1npe_A 116 LFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMD-GTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECL 194 (267)
T ss_dssp EECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETT-SCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred EEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecC-CCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEE
Confidence 222222467899999987777666543111134444444 3322222 23335678999999888777777778999999
Q ss_pred eCCCCeeeecccccccceEEEEECCCCCeEEEEE-cCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCC
Q 007229 176 EGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVS-SDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGK 248 (612)
Q Consensus 176 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~ 248 (612)
|.........+.+ ......++.. +..|+.+. ..+.|.++|..+++.+..+.. +.......+++.|++.
T Consensus 195 ~~~g~~~~~~~~~-~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~--g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 195 NPAQPGRRKVLEG-LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHP--HKQTRLYGITIALSQC 263 (267)
T ss_dssp ETTEEEEEEEEEC-CCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECC--SSCCCCCCEEEECSCC
T ss_pred ecCCCceEEEecC-CCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEcc--ccccccceeeecCccC
Confidence 9876544333332 2234566653 55666555 458899999999998888732 2222467788888764
No 246
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.21 E-value=1.4e-09 Score=103.08 Aligned_cols=215 Identities=10% Similarity=0.023 Sum_probs=149.9
Q ss_pred EEEcc-----CCCEEEEec--CCEEEEEeCCCCceeeEecc-CCCceEEEEE-C-CCCCEEEEee---------------
Q 007229 24 ISGNP-----KTDTILYCN--GRSVLIRYLDKPLHVEFYGE-HGYPVTVARY-S-PNGEWIASAD--------------- 78 (612)
Q Consensus 24 ~~~s~-----d~~~l~~~~--~~~i~i~~~~~~~~~~~~~~-h~~~v~~~~~-s-~d~~~las~~--------------- 78 (612)
.++|. ||+++.+.. ++.|.+.|+++.++...+.- ....+..+++ + |+++++..++
T Consensus 90 ~~~s~t~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~ 169 (595)
T 1fwx_A 90 VHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMED 169 (595)
T ss_dssp EEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTC
T ss_pred cccCCCCCCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCccccc
Confidence 55555 999999987 57899999999998775542 2356889998 5 9999998884
Q ss_pred ---CcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCe------------eeEEEEEecCCceeeee
Q 007229 79 ---VSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGK------------SFVRAFMWDSGTTVGDF 143 (612)
Q Consensus 79 ---~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~------------~~i~i~~~~~~~~~~~~ 143 (612)
.++.+.+.|..+.+... ++..-. ....++++|||+++++++.+... ..+.+.+|...+
T Consensus 170 ~~~~~~~vtvID~~t~~v~~-qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~----- 242 (595)
T 1fwx_A 170 VANYVNVFTAVDADKWEVAW-QVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIE----- 242 (595)
T ss_dssp GGGEEEEEEEEETTTTEEEE-EEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHH-----
T ss_pred ccccCceEEEEECCCCeEEE-EEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeecccee-----
Confidence 35679999999987433 443322 56778899999999998876532 123344333221
Q ss_pred ccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCC--Cee-eecccccccceEEEEECCCCCeEEEEEc-CCcEEEEec
Q 007229 144 DGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPP--FKF-KLSHREHSNFVNCIRFSPDGSKLISVSS-DRKGLIYDG 219 (612)
Q Consensus 144 ~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~--~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~vwd~ 219 (612)
.+.++|++..+ +.|.+.|..+ ++. +..+.. .....++.++|||+++++++. +.+|.++|+
T Consensus 243 ----------~~v~~Gk~~~i-----~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~ 306 (595)
T 1fwx_A 243 ----------KAIAAGDYQEL-----NGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDV 306 (595)
T ss_dssp ----------HHHHHTCSEEE-----TTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEG
T ss_pred ----------EeccCCCeeEE-----CcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEEC
Confidence 12344553222 4599999988 444 334432 235678999999998887664 788999999
Q ss_pred CCCC------------eeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEee
Q 007229 220 KSGE------------KIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEIL 265 (612)
Q Consensus 220 ~~~~------------~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~ 265 (612)
.+.+ ....+ .-......++|+|+|...++.-.|++|..||+.
T Consensus 307 ~~~~~~~~~~l~~~~~v~~~v----~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~ 360 (595)
T 1fwx_A 307 TRFDAVFYENADPRSAVVAEP----ELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIE 360 (595)
T ss_dssp GGHHHHHHSCCCGGGGEEECC----BCCSCEEEEEECTTSEEEEEETTTTEEEEEEHH
T ss_pred cccccccccccCcccceEEEc----CCCCCcceEEECCCCeEEEEEecCCcEEEEEhh
Confidence 8653 23333 344568899999999444555678999999993
No 247
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.20 E-value=4.1e-09 Score=99.99 Aligned_cols=122 Identities=12% Similarity=0.139 Sum_probs=81.7
Q ss_pred eeecccceEEEEEEccCCCeEEEEe-cCCeEEEEEccCccc------c----cceeeccccCceEEEEEcCCCcEEEEEc
Q 007229 445 SKIDLGFTVTACAIAPDGSEAIVGG-QNGKLHIYSISGNTL------T----EEMVLEKHRGAITVIQYSPDVSMFASAD 513 (612)
Q Consensus 445 ~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~v~i~d~~~~~~------~----~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 513 (612)
..++......++.++|||+++++++ .+..|.++|+.+.+. . ....+. -......++|+|+|...++..
T Consensus 271 ~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~aF~~dG~aY~t~~ 349 (595)
T 1fwx_A 271 RYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFDGRGNAYTSLF 349 (595)
T ss_dssp EEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEEEECTTSEEEEEET
T ss_pred EEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceEEECCCCeEEEEEe
Confidence 3444445677899999999887765 567999999986531 0 011222 224578899999996566777
Q ss_pred CCCeEEEEecCC----------cceeeeccccccc-----ceeEEEecCCCcEEEEee---cCcE----------EEEEE
Q 007229 514 GNREAIVWDRVS----------KEVKLNNMLFHTA-----RINCLAWSPSSTMVATGS---IDTC----------VIIYE 565 (612)
Q Consensus 514 ~d~~i~iwd~~~----------~~~~~~~~~~~~~-----~i~~~~~s~~~~~l~s~~---~d~~----------i~iwd 565 (612)
.|++|.+||+.+ .+.+ ..+..|.. .-..+.++|||++|++.. .|+. -.++|
T Consensus 350 ldsqV~kwdi~~a~~~~~g~~~~~vi-~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~d 428 (595)
T 1fwx_A 350 LDSQVVKWNIEDAIRAYAGEKVDPIK-DKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLID 428 (595)
T ss_dssp TTTEEEEEEHHHHHHHHHTCSCCCEE-EEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEE
T ss_pred cCCcEEEEEhhHhhhhhcccccceeE-EEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEE
Confidence 899999999987 2232 33333322 223457789999998874 3442 28899
Q ss_pred ccC
Q 007229 566 IGK 568 (612)
Q Consensus 566 ~~~ 568 (612)
+..
T Consensus 429 is~ 431 (595)
T 1fwx_A 429 ISG 431 (595)
T ss_dssp CSS
T ss_pred cCC
Confidence 965
No 248
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.15 E-value=1.6e-11 Score=114.10 Aligned_cols=188 Identities=10% Similarity=-0.048 Sum_probs=107.0
Q ss_pred CCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCce
Q 007229 70 NGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRR 149 (612)
Q Consensus 70 d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~ 149 (612)
++..+++++.||.|..||..+++.+. .+.. +.+.+..+..+++.+++++.++ .+..++..+|+.+..+..+...
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W-~~~~--~~~~s~p~~~~g~~~v~~s~dg---~l~a~d~~tG~~~w~~~~~~~~ 81 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKW-TLKE--DPVLQVPTHVEEPAFLPDPNDG---SLYTLGSKNNEGLTKLPFTIPE 81 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEE-EEEC--CCSCCCC-----CCEEECTTTC---CEEEC-----CCSEECSCCHHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEE-EecC--CCceecceEcCCCEEEEeCCCC---EEEEEECCCCceeeeeeccCcc
Confidence 57789999999999999999998543 3333 5566666677887777766665 2445555578877666544221
Q ss_pred -EE-EEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeee
Q 007229 150 -VL-SCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGE 227 (612)
Q Consensus 150 -v~-~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 227 (612)
+. +..+. .+. .+++++.++.++.||..+|+.+..+..+. ...++|++..+++++.|+.|+.||.++|+.+..
T Consensus 82 ~~~~sp~~~-~~~-~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~ 155 (369)
T 2hz6_A 82 LVQASPCRS-SDG-ILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWN 155 (369)
T ss_dssp HHTTCSCC-------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCE
T ss_pred ccccCceEe-cCC-EEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEe
Confidence 10 01111 233 58889999999999999999988776543 234567888999999999999999999998766
Q ss_pred eeccCCccccEEEEEEecCC---CEEEEEeCCCcEEEEEeecCCCCCeeEeeee
Q 007229 228 FSSEDGHHGSIYAVSWSPDG---KKVLTVSADKSAKVWEILEDGSGGRVIKTFA 278 (612)
Q Consensus 228 ~~~~~~~~~~v~~i~~~~~~---~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 278 (612)
+... .....++.++. ..+++++.+|.+..||. .+++.+-.+.
T Consensus 156 ~~~~-----~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~----~tG~~~W~~~ 200 (369)
T 2hz6_A 156 ATYF-----DYAASLPEDDVDYKMSHFVSNGDGLVVTVDS----ESGDVLWIQN 200 (369)
T ss_dssp EEEE-----EECCBCCCCCTTCCCCEEEEETSCEEEEECT----TTCCEEEEEE
T ss_pred Eecc-----cccCccccCCccccceEEEECCCCEEEEEEC----CCCcEEEEec
Confidence 6211 11223333332 45777889999999999 7887766554
No 249
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=99.10 E-value=1.2e-05 Score=79.52 Aligned_cols=511 Identities=8% Similarity=-0.029 Sum_probs=268.4
Q ss_pred EEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEE
Q 007229 73 WIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLS 152 (612)
Q Consensus 73 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~ 152 (612)
+|+.+ ....|+.-|+.+...........-.....++|.+++..|..+...... |.....+.......+.........
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~--I~r~~~~g~~~~~v~~~g~~~P~G 84 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKT--ISRAFMNGSALEHVVEFGLDYPEG 84 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTE--EEEEETTSCSCEEEECSSCSCCCE
T ss_pred EEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCe--EEEEECCCCCcEEEEeCCCCCcce
Confidence 44444 456789999987652211111223468899999988887776655432 333334433322233323345778
Q ss_pred EEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEc--CCcEEEEecCCCCeeeeeec
Q 007229 153 CEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSS--DRKGLIYDGKSGEKIGEFSS 230 (612)
Q Consensus 153 ~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~ 230 (612)
+++.+.+..+.++-...+.|.+.++........+...-.....+++.|...+|+.... .+.|...++.........
T Consensus 85 lAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~-- 162 (628)
T 4a0p_A 85 MAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLV-- 162 (628)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE--
T ss_pred EEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEE--
Confidence 9999877766777777889999998654332222233456789999996666766553 467777776544333323
Q ss_pred cCCccccEEEEEEecCCCEEEEEeC-CCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEc-CCEE
Q 007229 231 EDGHHGSIYAVSWSPDGKKVLTVSA-DKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSL-GGII 308 (612)
Q Consensus 231 ~~~~~~~v~~i~~~~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i 308 (612)
..-.....++++++++.|+.+.. .+.|...++ ..... ..+... .....++...++.++.... .+.|
T Consensus 163 --~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~----dG~~~-~v~~~~-----l~~P~glav~~~~ly~tD~~~~~I 230 (628)
T 4a0p_A 163 --PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNM----LGLNR-EVIADD-----LPHPFGLTQYQDYIYWTDWSRRSI 230 (628)
T ss_dssp --CSCSSEEEEEEETTTTEEEEEETTTTEEEEEET----TSCSC-EEEEEC-----CSCEEEEEEETTEEEEEETTTTEE
T ss_pred --CCCCCcceEEEccccCEEEEEECCCCEEEEEcC----CCCce-EEeecc-----CCCceEEEEECCEEEEecCCCCEE
Confidence 23456789999998777766654 567777777 22222 222211 1123344445566666654 6888
Q ss_pred EEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEE-Eec-C---CcEEEEEcCCc-eeeee--ceecccceEEEEeec
Q 007229 309 SIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILS-SSY-D---GAIIKWIRGVG-YSSKL--EKKYDARIKCLAAVE 380 (612)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~-~~~-d---g~i~~wd~~~~-~~~~~--~~~~~~~i~~~~~~~ 380 (612)
...+...... ...+.........+.......+.-.- +.. + ..+++-..... .+.-. .........|... .
T Consensus 231 ~~~dk~tg~~-~~~l~~~~~~p~~i~v~~~~~q~~~n~C~~~ng~C~~~C~~~~~~~~~C~C~~g~~l~~d~~~C~~~-~ 308 (628)
T 4a0p_A 231 ERANKTSGQN-RTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAP-T 308 (628)
T ss_dssp EEEETTTCCS-CEEEECSCCSCCEEEEECGGGSCCCCTTTTTGGGCSSEEEEETTTEEEEECSTTCEECTTSSCEECC-S
T ss_pred EEEECCCCCc-eEEEecCCCCcceeeeeeecccccceEeccCCCCcchhhhcCCCCCeeEEcCCCcEecccCCcCccc-c
Confidence 8888544332 23333333333444433110000000 000 0 01222111000 00000 0001111222222 2
Q ss_pred cEEEEecCCCeEEEEecCCCCCCc-cceeccCCCcceeeecCCCCcEEEEEeecc-EEEee-ccccee-eec-------c
Q 007229 381 EVIFTAGFDNKVWRVPLCEGECGD-AEHIDVGSQPLDLSLALSSPELALVSTESG-VILLD-SLKVMS-KID-------L 449 (612)
Q Consensus 381 ~~l~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~-~~~-------~ 449 (612)
.+++.+ ....|+...+....... .........+..+.+.+....+........ +..+. .+.... .+. .
T Consensus 309 ~~Ll~s-~~~~i~~i~l~~~~~~~~~l~~~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~ 387 (628)
T 4a0p_A 309 TFLLFS-QKSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNL 387 (628)
T ss_dssp SEEEEE-ETTEEEEECCCTTCCCCEECCCTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------
T ss_pred ceeeee-ccceEEEEecccccCceEEEEehhcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccc
Confidence 233332 34456655554332110 111122234566777777767766665443 44444 222211 111 1
Q ss_pred cceEEEEEEccCCCeEE-EEecCCeEEEEEccCcccccceeeccccCceEEEEEcC-CCcEEEEEcCCC--eEEEEecCC
Q 007229 450 GFTVTACAIAPDGSEAI-VGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSP-DVSMFASADGNR--EAIVWDRVS 525 (612)
Q Consensus 450 ~~~i~~~~~s~~~~~l~-~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~d~--~i~iwd~~~ 525 (612)
...+..+++...++.|. +-...+.|.+.+++.... ...+...-....+|++.| .|.++.+-.... .|...++..
T Consensus 388 ~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~G~~~--~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG 465 (628)
T 4a0p_A 388 EIQPYDLSIDIYSRYIYWTCEATNVINVTRLDGRSV--GVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDG 465 (628)
T ss_dssp CCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCEE--EEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTS
T ss_pred cCCcceEEeeccCCeEEEEcCCCCEEEEEECCCCeE--EEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCC
Confidence 23578999999876655 445678899999875432 122223345689999999 555555433333 566666655
Q ss_pred cceeeecccccccceeEEEecCCCcEEEEee-cCcEEEEEEccCCCcceeeeecccccCeeeEEEecCceEEEccCCCeE
Q 007229 526 KEVKLNNMLFHTARINCLAWSPSSTMVATGS-IDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFMDDFNVVSSGEDACI 604 (612)
Q Consensus 526 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i 604 (612)
.... ......-...+.|++.++++.|..+. ..+.|...+++... .............+|+...+..+++=.....|
T Consensus 466 ~~~~-~l~~~~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~~--r~~~~~~~~~~P~glav~~~~ly~tD~~~~~i 542 (628)
T 4a0p_A 466 TERE-VLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGAN--RIVLEDSNILQPVGLTVFENWLYWIDKQQQMI 542 (628)
T ss_dssp CSCE-EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS--CEEEECSSCSCEEEEEEETTEEEEEETTTTEE
T ss_pred CCcE-EEEeccCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCCc--eEEEEcCCCCCcEEEEEECCEEEEEECCCCeE
Confidence 4432 22222234578999999877776664 45789999997633 22222233344566766544444444445555
Q ss_pred EEEE
Q 007229 605 RVWR 608 (612)
Q Consensus 605 ~~w~ 608 (612)
...|
T Consensus 543 ~~~~ 546 (628)
T 4a0p_A 543 EKID 546 (628)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4444
No 250
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=99.10 E-value=2.5e-05 Score=82.86 Aligned_cols=518 Identities=10% Similarity=0.021 Sum_probs=257.4
Q ss_pred ceEEEEECCCCCEEEEeeCcCeEEEeecCCCce-------eeeeeeecCCCeEEEEECCC----CCEEEEEeCCCCeeeE
Q 007229 61 PVTVARYSPNGEWIASADVSGSVRIWGTHNGFV-------LKNEFKVLSGRIDDLQWSPD----GLRIVACGDGKGKSFV 129 (612)
Q Consensus 61 ~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~-------~~~~~~~~~~~i~~~~~s~~----~~~l~~~~~~~~~~~i 129 (612)
.-+++++-.+| +|..|+..|.=.+|.+..... +... -..-++|..++.... ...|++++..+....+
T Consensus 328 ~~ssl~~l~~g-~lFvgS~~Gds~l~~~~~~~~~~~~~~~~~~~-~~N~~PI~D~~v~d~~~~~~~~i~~~sG~g~~gsL 405 (1158)
T 3ei3_A 328 IAECLTYLDNG-VVFVGSRLGDSQLVKLNVDSNEQGSYVVAMET-FTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSL 405 (1158)
T ss_dssp CCSEEEECSTT-EEEEECSSSCEEEEEECSSCCTTSCCEEEEEE-ECCCCSEEEEEEECTTSSSCCEEEEEECCGGGCEE
T ss_pred CccEEEEECCC-EEEEEEecCCcEEEEEecCCCCccceEEeEee-ecCcCCceeEEEEccCCCCCCeEEEEECcCCCCeE
Confidence 34677777766 788888888777777764321 1111 224468888877432 2366665554433344
Q ss_pred EEEEecCC-ceee--eeccCCceEEEEEEc---CCCCEEEEEeecCCeEEEEeC--CCCeeeeccccc---ccceEEEEE
Q 007229 130 RAFMWDSG-TTVG--DFDGHSRRVLSCEFK---PTRPFRIATCGEDFLVNFYEG--PPFKFKLSHREH---SNFVNCIRF 198 (612)
Q Consensus 130 ~i~~~~~~-~~~~--~~~~~~~~v~~~~~~---~~~~~~l~~~~~d~~i~~wd~--~~~~~~~~~~~~---~~~v~~~~~ 198 (612)
++...--+ +... .+++ -..++.+... +.+.| |+.+..+.+ .++.+ ++.+.+ ...+. ...+.+-.+
T Consensus 406 ~~lr~Gi~~~~~~~~~l~g-v~~iWtl~~~~~~~~~~y-LvlS~~~~T-~Vl~i~~e~veev-~~~gf~~~~~TL~~~~l 481 (1158)
T 3ei3_A 406 RIIRNGIGIHEHASIDLPG-IKGLWPLRSDPNRETDDT-LVLSFVGQT-RVLMLNGEEVEET-ELMGFVDDQQTFFCGNV 481 (1158)
T ss_dssp EEEEESBCEEEEEEECCCS-CCEEEEECCCSSCSSCCE-EEEEETTEE-EEEEEETTEEEEE-CCTTCCSSSCEEEEEEE
T ss_pred EEEecCCCEEEEEeecCCC-ccEEEEEeecCCCCCCCE-EEEECCCCe-EEEEEeCCccccc-ccccccCCCCcEEEEEc
Confidence 44433311 1111 2332 3566666543 23455 555555555 44443 222222 11111 112222222
Q ss_pred CCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeee
Q 007229 199 SPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFA 278 (612)
Q Consensus 199 s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 278 (612)
++ ..++=.+. ..|++.+...+..+..+.. .....|...+.+ +.+++.+. .+.+.++++ ..++......
T Consensus 482 -~~-~~ivQVt~-~~Irli~~~~~~~~~~w~~--p~~~~I~~As~n--~~~vvva~-g~~l~~fel----~~~~L~~~~~ 549 (1158)
T 3ei3_A 482 -AH-QQLIQITS-ASVRLVSQEPKALVSEWKE--PQAKNISVASCN--SSQVVVAV-GRALYYLQI----HPQELRQISH 549 (1158)
T ss_dssp -TT-TEEEEEES-SCEEEEESSSCCEEEEECC--TTCCCCCEEEEC--SSEEEEEE-TTEEEEEEE----ETTEEEEEEE
T ss_pred -CC-CeEEEEec-CEEEEEECCCCeEEEEEEC--CCCCEEEEEEeC--CCEEEEEE-CCEEEEEEe----eCCceeeecc
Confidence 22 34444443 4588888766666666521 233456666654 34566664 678888888 3333222111
Q ss_pred ccCccccceeeeeeecc--------CCEEEEEEc-CCEEEEEEcCCCCCCceeecCcccceeEEEEE-ecCCcEEEEEec
Q 007229 279 SSTSNAVEDMLVGCLWQ--------NDHLITVSL-GGIISIFSASNLDKAPLSFSGHVKNVSTLTAL-KISQQTILSSSY 348 (612)
Q Consensus 279 ~~~~~~~~~~~~~~~~~--------~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~ 348 (612)
......+.++... ...+++|.. ++.++++++.........--+......++.+. -....++..|-.
T Consensus 550 ----~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~ 625 (1158)
T 3ei3_A 550 ----TEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALG 625 (1158)
T ss_dssp ----EECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEET
T ss_pred ----cCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeC
Confidence 1112234444432 367888886 99999999875332211111112344555555 222457888999
Q ss_pred CCcEEEEEcC--Cceeeeecee--cccceEEEEe--ecc-EEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecC
Q 007229 349 DGAIIKWIRG--VGYSSKLEKK--YDARIKCLAA--VEE-VIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLAL 421 (612)
Q Consensus 349 dg~i~~wd~~--~~~~~~~~~~--~~~~i~~~~~--~~~-~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (612)
||.+..+.++ ++........ ...++.-..+ .+. .+++.+ +....++... +... ........-.....|+.
T Consensus 626 dG~l~~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s-~rp~liy~~~-~~l~-~s~l~~~~v~~~~~F~s 702 (1158)
T 3ei3_A 626 DGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACS-DRPTVIYSSN-HKLV-FSNVNLKEVNYMCPLNS 702 (1158)
T ss_dssp TSEEEEEEECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEES-SSCEEEEESS-SSEE-EEEBSSSCCCEEEEECC
T ss_pred CCeEEEEEEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEEC-CCCEEEEEcC-CceE-EeccChHHhceEeccCc
Confidence 9998766554 3333221111 1223322222 222 233333 3322223221 1110 11111111112223332
Q ss_pred C-CCcEEEEEeeccEEEee----cccceeeecccceEEEEEEccCCCeEEEEecC-------------------------
Q 007229 422 S-SPELALVSTESGVILLD----SLKVMSKIDLGFTVTACAIAPDGSEAIVGGQN------------------------- 471 (612)
Q Consensus 422 ~-~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d------------------------- 471 (612)
. -+.-++...++.+.+.. ..-..++++....+..++++|+.+.++++..+
T Consensus 703 e~~~~g~v~~~~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 782 (1158)
T 3ei3_A 703 DGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSS 782 (1158)
T ss_dssp SSSTTEEEEECSSCEEEEEECCSSSEEEEEEECSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEE
T ss_pred ccCCCcEEEEcCCceEEEEecccCCeeEEEEeCCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhc
Confidence 2 13344444455555554 22345566678889999999988876665422
Q ss_pred ------------------------CeEEEEEccCcccccceeeccccCceEEEE---EcCC-CcEEEEEc----------
Q 007229 472 ------------------------GKLHIYSISGNTLTEEMVLEKHRGAITVIQ---YSPD-VSMFASAD---------- 513 (612)
Q Consensus 472 ------------------------g~v~i~d~~~~~~~~~~~~~~~~~~i~~~~---~s~~-~~~l~~~~---------- 513 (612)
+.|++.|..+.+......+.. +..+.+++ |..+ ..+++.|.
T Consensus 783 ~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~-nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~ 861 (1158)
T 3ei3_A 783 VSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQ-NEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEP 861 (1158)
T ss_dssp ECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCT-TEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSC
T ss_pred ccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCC-CcceEEEEEEEEccCCCEEEEEEeeecCCCCCCC
Confidence 135555555444322223332 23344444 4332 46888775
Q ss_pred CCCeEEEEecCCcceeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeecccccCeeeEEEe-cC
Q 007229 514 GNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFM-DD 592 (612)
Q Consensus 514 ~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~-~~ 592 (612)
..|.|++|++..++..........++|++++-- +|++||.. .+++++|++.... .+..-..+-..|..+... -+
T Consensus 862 ~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g~Lla~i--g~~l~vy~l~~~~--~L~~~~~~~~~i~~~~l~~~~ 936 (1158)
T 3ei3_A 862 KQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF-NGKLLASI--NSTVRLYEWTTEK--ELRTECNHYNNIMALYLKTKG 936 (1158)
T ss_dssp CCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE-TTEEEEEE--TTEEEEEEECTTS--CEEEEEEECCCSCEEEEEEET
T ss_pred CceEEEEEEEECCEEEEEEEEEcCCcCEEEeee-CCEEEEEc--CCEEEEEECCCCc--eEEEEeeccccEEEEEEeccC
Confidence 348899999975544322222346778888744 46544433 4689999998732 222111111123322332 46
Q ss_pred ceEEEccCCCeEEEEEe
Q 007229 593 FNVVSSGEDACIRVWRL 609 (612)
Q Consensus 593 ~~l~s~~~d~~i~~w~~ 609 (612)
++++.|..-..|.+...
T Consensus 937 ~~I~vgD~~~Sv~~~~y 953 (1158)
T 3ei3_A 937 DFILVGDLMRSVLLLAY 953 (1158)
T ss_dssp TEEEEEESSBCEEEEEE
T ss_pred CEEEEEEhhheEEEEEE
Confidence 77888876666666554
No 251
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.09 E-value=6.3e-08 Score=83.11 Aligned_cols=203 Identities=12% Similarity=0.072 Sum_probs=135.4
Q ss_pred eeeEeccCCC--ceEEEEECCCCCEEEEeeC--cCeEEEeecCCCceeeeeeee-cCCCeEEEEECCCCCEEEEEeCCCC
Q 007229 51 HVEFYGEHGY--PVTVARYSPNGEWIASADV--SGSVRIWGTHNGFVLKNEFKV-LSGRIDDLQWSPDGLRIVACGDGKG 125 (612)
Q Consensus 51 ~~~~~~~h~~--~v~~~~~s~d~~~las~~~--d~~i~iwd~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~~~~ 125 (612)
.+..+ .|.. ....++|+||+.+.++.+. ++.|.+.|+.+++.+. .+.. .......+++ +++.|..+....+
T Consensus 11 vv~~~-p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~-~i~l~~~~fgeGi~~--~g~~lyv~t~~~~ 86 (266)
T 2iwa_A 11 VLNEF-PHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVEN-IHKMDDSYFGEGLTL--LNEKLYQVVWLKN 86 (266)
T ss_dssp EEEEE-ECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEE-EEECCTTCCEEEEEE--ETTEEEEEETTCS
T ss_pred EEEEE-ECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEE-EEecCCCcceEEEEE--eCCEEEEEEecCC
Confidence 34444 3543 3679999999866666543 5799999999998443 3332 2122233444 4667777776554
Q ss_pred eeeEEEEEecCCceeeeeccC-CceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccc-----cceEEEEEC
Q 007229 126 KSFVRAFMWDSGTTVGDFDGH-SRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHS-----NFVNCIRFS 199 (612)
Q Consensus 126 ~~~i~i~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~-----~~v~~~~~s 199 (612)
.+.+++.++.+.+.+++.. .. ...+++|++.++++ ..++.|.++|..+.+.+..+.-.. ..++.+.|.
T Consensus 87 --~v~viD~~t~~v~~~i~~g~~~---g~glt~Dg~~l~vs-~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~ 160 (266)
T 2iwa_A 87 --IGFIYDRRTLSNIKNFTHQMKD---GWGLATDGKILYGS-DGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI 160 (266)
T ss_dssp --EEEEEETTTTEEEEEEECCSSS---CCEEEECSSSEEEE-CSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE
T ss_pred --EEEEEECCCCcEEEEEECCCCC---eEEEEECCCEEEEE-CCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE
Confidence 3666666688888888643 22 23466678755554 468899999999988877755221 236788888
Q ss_pred CCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCC----------ccccEEEEEEecCCCEEEEEe-CCCcEEEEEe
Q 007229 200 PDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDG----------HHGSIYAVSWSPDGKKVLTVS-ADKSAKVWEI 264 (612)
Q Consensus 200 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~----------~~~~v~~i~~~~~~~~l~~~~-~dg~i~iw~~ 264 (612)
++...+....++.|.+.|..+++.+..+..... .......++|+|+++.+++++ ..+.+...++
T Consensus 161 -dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l 235 (266)
T 2iwa_A 161 -NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKL 235 (266)
T ss_dssp -TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEE
T ss_pred -CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEE
Confidence 674444443578999999999999988853210 113568999999987655554 5678888887
No 252
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=99.07 E-value=2.5e-05 Score=80.55 Aligned_cols=523 Identities=8% Similarity=0.001 Sum_probs=276.7
Q ss_pred CCceeEEEEccCCCEEEEecCCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeee
Q 007229 18 RGRGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNE 97 (612)
Q Consensus 18 ~~~v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~ 97 (612)
...|.++....+|. |-++.++.+..||..+.+...........|.++.. .+|. |-.++.+ -+..+|..+++ .. .
T Consensus 62 ~~~i~~i~~d~~g~-lWigT~~Gl~~yd~~~~~f~~~~~~~~~~i~~i~~-~~g~-lWigt~~-Gl~~~~~~~~~-~~-~ 135 (758)
T 3ott_A 62 NTRIYCGVIIDNTY-LYMGTDNGILVYNYRADRYEQPETDFPTDVRTMAL-QGDT-LWLGALN-GLYTYQLQSRK-LT-S 135 (758)
T ss_dssp SSCEEEEEEETTTE-EEEEETTEEEEEETTTTEECCCSCCCCSCEEEEEE-ETTE-EEEEETT-EEEEEETTTCC-EE-E
T ss_pred CceEEEEEEcCCCc-EEEEeCCCeEEEeCCCCEEECcccCCCceEEEEEe-cCCc-EEEEcCC-cceeEeCCCCe-EE-E
Confidence 34688888888775 55555556889998876433211112345777765 4554 4445455 57888887765 22 1
Q ss_pred ee-----ecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec--CCceeeeec--c----CCceEEEEEEcCCCCEEEE
Q 007229 98 FK-----VLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD--SGTTVGDFD--G----HSRRVLSCEFKPTRPFRIA 164 (612)
Q Consensus 98 ~~-----~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~--~~~~~~~~~--~----~~~~v~~~~~~~~~~~~l~ 164 (612)
+. .....|.++....+|...+.. ..+ ++.++ +++ ...+. . ....|.++...+++.. |.
T Consensus 136 ~~~~~~~l~~~~i~~i~~d~~g~lWigt-~~G------l~~~~~~~~~-~~~~~~~~~~~~~~~~i~~i~~d~~~~~-lW 206 (758)
T 3ott_A 136 FDTRRNGLPNNTIYSIIRTKDNQIYVGT-YNG------LCRYIPSNGK-FEGIPLPVHSSQSNLFVNSLLEDTTRQC-VW 206 (758)
T ss_dssp ECHHHHCCSCSCEEEEEECTTCCEEEEE-TTE------EEEEETTTTE-EEEECCCCCTTCSSCCEEEEEEETTTTE-EE
T ss_pred eccCCCCcCCCeEEEEEEcCCCCEEEEe-CCC------HhhCccCCCc-eEEecCCCccccccceeEEEEEECCCCE-EE
Confidence 21 113468888888888776643 333 44444 332 22221 1 1234888888877663 45
Q ss_pred EeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeecc----CCccccEEE
Q 007229 165 TCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSE----DGHHGSIYA 240 (612)
Q Consensus 165 ~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~----~~~~~~v~~ 240 (612)
.|+. +-+..+|..+++...........|.++...++|.+.+ |+. +-+.+++..+++........ .-....|.+
T Consensus 207 igt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gT~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~ 283 (758)
T 3ott_A 207 IGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLA-GTD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWN 283 (758)
T ss_dssp EEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEE-EET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEE
T ss_pred EEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEE-EeC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEE
Confidence 5554 4588888877654322112234688888888886544 554 45888987765443221100 012346888
Q ss_pred EEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeecc--Cccccceeeeeeecc-CCEEEEEEcCCEEEEEEcCCCC
Q 007229 241 VSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASS--TSNAVEDMLVGCLWQ-NDHLITVSLGGIISIFSASNLD 317 (612)
Q Consensus 241 i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~ 317 (612)
+....+|. |-.|+..| +.++.. .. ....+... ........+.++..+ ++.+.+|+.+ -+..++.....
T Consensus 284 i~~D~~g~-lWiGT~~G-l~~~~~-----~~-~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiGt~~-Gl~~~~~~~~~ 354 (758)
T 3ott_A 284 IFADQEHN-IWLGTDYG-ISLSRY-----NS-ALQFIPISQITGTGDGNQFYSLFRDSKGFYWFGGAN-GLIRFTDPAGE 354 (758)
T ss_dssp EEECTTCC-EEEEESSS-EEEECC-----CC--CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEEETT-EEEEESCTTSS
T ss_pred EEEcCCCC-EEEEeCCc-cccccc-----CC-ceeEEecccCCCCCCCceEEEEEEcCCCCEEEeeCC-cceeecccccc
Confidence 88887776 44455556 544432 11 11111110 000111233444333 6678888765 46666544321
Q ss_pred C-Cceeec-------CcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeecee------cccceEEEEe-eccE
Q 007229 318 K-APLSFS-------GHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKK------YDARIKCLAA-VEEV 382 (612)
Q Consensus 318 ~-~~~~~~-------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~------~~~~i~~~~~-~~~~ 382 (612)
. ....+. -....|.++.... ...|..|+ ++-+..+|..+++....... ....|.++.. ..+.
T Consensus 355 ~~~~~~~~~~~~~~~l~~~~v~~i~~d~--~g~lWigt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~ 431 (758)
T 3ott_A 355 RHDAIWYRMGDKTYPLSHNRIRHIYEDK--EQQLWIAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQ 431 (758)
T ss_dssp CCCCEEECTTCSSSCCSCSCEEEEEECT--TSCEEEEE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSE
T ss_pred cceeEEeccCCcCCCCCCCceEEEEECC--CCCEEEEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCC
Confidence 1 111111 0123455554432 34455555 45799999887765443211 2345777777 4567
Q ss_pred EEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCC
Q 007229 383 IFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDG 462 (612)
Q Consensus 383 l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 462 (612)
|..++..+-+..++..+............ ..+... ..+ ....|.++...++|
T Consensus 432 lWigT~~~Gl~~~~~~~~~~~~~~~~~~~------------------------~~~~~~---~~l-~~~~i~~i~~d~~g 483 (758)
T 3ott_A 432 LWISTCLGGIFVVDKHKLMQSTSGQYIAE------------------------QNYSVH---NGL-SGMFINQIIPDNEG 483 (758)
T ss_dssp EEEEESSSCEEEEEHHHHHHCCSSEEECS------------------------EEECGG---GTC-SCSCEEEEEECTTS
T ss_pred EEEEECCCceEEEccccccccCCcceecc------------------------cccccc---ccc-ccceeeeEEEcCCC
Confidence 88888777777777542100000000000 000000 000 12248888888888
Q ss_pred CeEEEEecCCeEEEEEccCcccccceee-ccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccc-cccce
Q 007229 463 SEAIVGGQNGKLHIYSISGNTLTEEMVL-EKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLF-HTARI 540 (612)
Q Consensus 463 ~~l~~~~~dg~v~i~d~~~~~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~i 540 (612)
++.+.++..+-|..+|..+++......- ......+.++....+|.+.+.. .. -+..+|..+.+...-...+ ....|
T Consensus 484 ~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWigt-~~-Gl~~~~~~~~~~~~~~~~gl~~~~i 561 (758)
T 3ott_A 484 NVWVLLYNNKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVGF-HG-GVMRINPKDESQQSISFGSFSNNEI 561 (758)
T ss_dssp CEEEEETTCSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEEE-TT-EEEEECC--CCCCBCCCCC---CCE
T ss_pred CEEEEccCCCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEEe-cC-ceEEEecCCCceEEecccCCCccce
Confidence 8776333344588899887765221100 0113467888888888777654 44 4888887766542111111 13457
Q ss_pred eEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeecccccCeeeEEEe-cCceEEEccCCCeEEE
Q 007229 541 NCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFM-DDFNVVSSGEDACIRV 606 (612)
Q Consensus 541 ~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~~~d~~i~~ 606 (612)
.++... +|++. .++.+| +..+|..+ . .+..+......+....+. .+..|.-|+.+|-+.+
T Consensus 562 ~~i~~~-~g~lW-i~t~~G-l~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~G~l~fG~~~Gl~~f 622 (758)
T 3ott_A 562 LSMTCV-KNSIW-VSTTNG-LWIIDRKT-M--DARQQNMTNKRFTSLLFDPKEDCVYLGGADGFGIS 622 (758)
T ss_dssp EEEEEE-TTEEE-EEESSC-EEEEETTT-C--CEEEC--CCCCCSEEEEETTTTEEEEECBSEEEEE
T ss_pred EEEEEC-CCCEE-EECCCC-eEEEcCCC-c--eeEEecCCCCceeeeEEECCCCcEEEecCCceEEE
Confidence 777764 66544 445666 78888876 2 233222222334445555 5677888888885543
No 253
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.06 E-value=1.4e-07 Score=80.92 Aligned_cols=195 Identities=8% Similarity=-0.103 Sum_probs=129.6
Q ss_pred CceeEEEEccCCCEEEEec---CCEEEEEeCCCCceeeEeccC-CCceEEEEECCCCCEEEEeeCcCeEEEeecCCCcee
Q 007229 19 GRGILISGNPKTDTILYCN---GRSVLIRYLDKPLHVEFYGEH-GYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVL 94 (612)
Q Consensus 19 ~~v~~~~~s~d~~~l~~~~---~~~i~i~~~~~~~~~~~~~~h-~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~ 94 (612)
.....++|+||+.+.++.+ ++.|.+.|+++++.+..+.-. ......+++.. +++.++.-.++.+.++|..+.+.+
T Consensus 21 ~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g-~~lyv~t~~~~~v~viD~~t~~v~ 99 (266)
T 2iwa_A 21 AFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLN-EKLYQVVWLKNIGFIYDRRTLSNI 99 (266)
T ss_dssp CCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEET-TEEEEEETTCSEEEEEETTTTEEE
T ss_pred CCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeC-CEEEEEEecCCEEEEEECCCCcEE
Confidence 3456899999975444443 479999999999998876421 11223455542 234444557889999999998844
Q ss_pred eeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccC--Cc---eEEEEEEcCCCCEEEEEeecC
Q 007229 95 KNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGH--SR---RVLSCEFKPTRPFRIATCGED 169 (612)
Q Consensus 95 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~--~~---~v~~~~~~~~~~~~l~~~~~d 169 (612)
..+..-.. ....+++||++|+++...+ .+.+.+.++.+.+..+.-. .. .+..+.|. ++. +.+....+
T Consensus 100 -~~i~~g~~--~g~glt~Dg~~l~vs~gs~---~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~-lyvn~~~~ 171 (266)
T 2iwa_A 100 -KNFTHQMK--DGWGLATDGKILYGSDGTS---ILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGE-VWANIWQT 171 (266)
T ss_dssp -EEEECCSS--SCCEEEECSSSEEEECSSS---EEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE-EEEEETTS
T ss_pred -EEEECCCC--CeEEEEECCCEEEEECCCC---eEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCE-EEEecCCC
Confidence 34442211 2244667888888765322 4555555577777766522 22 36678888 664 56666678
Q ss_pred CeEEEEeCCCCeeeeccccc-------------ccceEEEEECCCCCeEEEEE-cCCcEEEEecCCC
Q 007229 170 FLVNFYEGPPFKFKLSHREH-------------SNFVNCIRFSPDGSKLISVS-SDRKGLIYDGKSG 222 (612)
Q Consensus 170 ~~i~~wd~~~~~~~~~~~~~-------------~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~ 222 (612)
+.|.+.|..+++.+..+.-. ......++|+|+++.+++++ ..+.+.+.++...
T Consensus 172 ~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 172 DCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp SEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred CeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 89999999999988776421 13568999999988666555 5788888887654
No 254
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=99.02 E-value=1e-07 Score=80.56 Aligned_cols=201 Identities=16% Similarity=0.197 Sum_probs=132.4
Q ss_pred eeEeccCCCc--eEEEEECCCCCEEEEeeCcC--eEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCee
Q 007229 52 VEFYGEHGYP--VTVARYSPNGEWIASADVSG--SVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKS 127 (612)
Q Consensus 52 ~~~~~~h~~~--v~~~~~s~d~~~las~~~d~--~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~ 127 (612)
++.+ .|... ...+.|+ ++.+..+.+.+| .|+++|+++++.+. .+.. ..........+++..|........
T Consensus 34 v~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~-~~~l-~~~~FgeGit~~g~~ly~ltw~~~-- 107 (262)
T 3nol_A 34 VHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQ-QIEL-GKRYFGEGISDWKDKIVGLTWKNG-- 107 (262)
T ss_dssp EEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEE-EEEC-CTTCCEEEEEEETTEEEEEESSSS--
T ss_pred EEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEE-EEec-CCccceeEEEEeCCEEEEEEeeCC--
Confidence 4444 45443 4789998 777777777765 89999999998443 4432 233433333445667777665444
Q ss_pred eEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeeccccc--c---cceEEEEECCCC
Q 007229 128 FVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREH--S---NFVNCIRFSPDG 202 (612)
Q Consensus 128 ~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~--~---~~v~~~~~s~~~ 202 (612)
.+.+++.++.+.+.+++.... ...++++++. |+....++.|.++|..+.+.+.++.-. . ..++.+.|. +|
T Consensus 108 ~v~v~D~~t~~~~~ti~~~~e---G~glt~dg~~-L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G 182 (262)
T 3nol_A 108 LGFVWNIRNLRQVRSFNYDGE---GWGLTHNDQY-LIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DG 182 (262)
T ss_dssp EEEEEETTTCCEEEEEECSSC---CCCEEECSSC-EEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TT
T ss_pred EEEEEECccCcEEEEEECCCC---ceEEecCCCE-EEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CC
Confidence 366667778999988875432 2334456764 444455788999999999888775432 1 334567776 67
Q ss_pred CeEEEEEcCCcEEEEecCCCCeeeeeeccC---------CccccEEEEEEecCCCEEEEEeCCCcEEEEEe
Q 007229 203 SKLISVSSDRKGLIYDGKSGEKIGEFSSED---------GHHGSIYAVSWSPDGKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 203 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~---------~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~ 264 (612)
+..+..-.++.|.+.|.++++.+..+.... ........|+|+|+++.|++.+.. -=++|.+
T Consensus 183 ~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~-Wp~~~ev 252 (262)
T 3nol_A 183 EIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL-WPKVFEI 252 (262)
T ss_dssp EEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT-CSEEEEE
T ss_pred EEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC-CCceEEE
Confidence 544444458899999999999988885421 112466899999998888877653 2344444
No 255
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=99.01 E-value=3.7e-07 Score=83.23 Aligned_cols=239 Identities=13% Similarity=0.006 Sum_probs=144.7
Q ss_pred ceeEEEEccCCCEEEEec-CCEEEEEeCCCCceeeEecc-------------------CCCceEEEEECC-CCCEEEEee
Q 007229 20 RGILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEFYGE-------------------HGYPVTVARYSP-NGEWIASAD 78 (612)
Q Consensus 20 ~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~~~-------------------h~~~v~~~~~s~-d~~~las~~ 78 (612)
...+++++++|+++.++. ++.|..|+..+++....... ....+..+++.+ +|+++++ .
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~-d 98 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIV-D 98 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEE-E
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEE-E
Confidence 345789999999666665 78999999887654332110 113578999998 6665554 3
Q ss_pred CcCeEEEeecCCCceeeeeee----ecCCCeEEEEECC-CCCEEEEEeCCC------------CeeeEEEEEec--CCce
Q 007229 79 VSGSVRIWGTHNGFVLKNEFK----VLSGRIDDLQWSP-DGLRIVACGDGK------------GKSFVRAFMWD--SGTT 139 (612)
Q Consensus 79 ~d~~i~iwd~~~~~~~~~~~~----~~~~~i~~~~~s~-~~~~l~~~~~~~------------~~~~i~i~~~~--~~~~ 139 (612)
..+.|..+|..+++. ..... ........+++.+ +|+..++..... ....-.++.++ +++.
T Consensus 99 ~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~ 177 (322)
T 2fp8_A 99 CYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKET 177 (322)
T ss_dssp TTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEE
T ss_pred CCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEE
Confidence 445588888776532 11111 1123578899999 998776643310 00012455555 3332
Q ss_pred eeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCe--eeecccccccceEEEEECCCCCeEEEEEc-------
Q 007229 140 VGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFK--FKLSHREHSNFVNCIRFSPDGSKLISVSS------- 210 (612)
Q Consensus 140 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------- 210 (612)
..+.........++++|+++.+.++-...+.|..|++.... ....+....+ ...+++.++|++.++...
T Consensus 178 -~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~ 255 (322)
T 2fp8_A 178 -TLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMH 255 (322)
T ss_dssp -EEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTT
T ss_pred -EEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCccccccc
Confidence 22222223345789999998656666777899999987421 1111111223 788999999986665544
Q ss_pred ---CCcEEEEecCCCCeeeeeeccCCc-cccEEEEEEecCCCEEEEEeCCCcEEEEEe
Q 007229 211 ---DRKGLIYDGKSGEKIGEFSSEDGH-HGSIYAVSWSPDGKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 211 ---dg~i~vwd~~~~~~~~~~~~~~~~-~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~ 264 (612)
.+.|..+|. .++.+..+....+. ...+..+++ .+++++++....+.|..+++
T Consensus 256 ~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~ 311 (322)
T 2fp8_A 256 GRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVY 311 (322)
T ss_dssp SCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC
T ss_pred CCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEec
Confidence 466888886 57777766433221 234566666 46665555556778888887
No 256
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.01 E-value=4e-07 Score=91.49 Aligned_cols=112 Identities=15% Similarity=0.132 Sum_probs=70.3
Q ss_pred CCeEEEEEcCCcEEEEecCCCCeeeeeeccCCcc-------ccE-EEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCee
Q 007229 202 GSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHH-------GSI-YAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRV 273 (612)
Q Consensus 202 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~-------~~v-~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 273 (612)
+..|++++.++.|.-+|..+|+.+-.+....... ..+ ..+++ .+..+++++.|+.|..+|. .+++.
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~----~tG~~ 139 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDA----KTGKA 139 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEET----TTCCE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEEC----CCCCE
Confidence 5567888889999999999999988774211110 000 11223 2456788888999999999 89998
Q ss_pred EeeeeccCccccceeeeeeeccCCEEEEEEc------CCEEEEEEcCCCCCC
Q 007229 274 IKTFASSTSNAVEDMLVGCLWQNDHLITVSL------GGIISIFSASNLDKA 319 (612)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~ 319 (612)
+-.+..................++.++++.. ++.+..+|..+....
T Consensus 140 ~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~ 191 (668)
T 1kv9_A 140 IWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLA 191 (668)
T ss_dssp EEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEE
T ss_pred eeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEE
Confidence 8877654221111111111223667777654 478999987665543
No 257
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.98 E-value=9.4e-08 Score=97.78 Aligned_cols=195 Identities=7% Similarity=-0.046 Sum_probs=116.1
Q ss_pred ceeEEEEc-cCCCEEEEecC------CEEEEEeCCCC-ceeeE-eccCCCceEEEEECCCCCEEEEeeCc-----CeEEE
Q 007229 20 RGILISGN-PKTDTILYCNG------RSVLIRYLDKP-LHVEF-YGEHGYPVTVARYSPNGEWIASADVS-----GSVRI 85 (612)
Q Consensus 20 ~v~~~~~s-~d~~~l~~~~~------~~i~i~~~~~~-~~~~~-~~~h~~~v~~~~~s~d~~~las~~~d-----~~i~i 85 (612)
.+...+|| |||++||+..+ ..|+++|++++ +.+.. +. .....++|+|||+.|+....| ..|.+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 57789999 99999999862 25999999998 63221 21 124578999999988877654 36888
Q ss_pred eecCCCcee-eeeee-ecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCc-ee--eee-ccCCceEEEEEEcCCC
Q 007229 86 WGTHNGFVL-KNEFK-VLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGT-TV--GDF-DGHSRRVLSCEFKPTR 159 (612)
Q Consensus 86 wd~~~~~~~-~~~~~-~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~-~~--~~~-~~~~~~v~~~~~~~~~ 159 (612)
+++.++... ...+. ........+.|||||++|+..........+.+++.+++. .. ..+ .........+.|+..+
T Consensus 252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~ 331 (751)
T 2xe4_A 252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTS 331 (751)
T ss_dssp EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTT
T ss_pred EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCC
Confidence 888776421 11222 223456788999999999887755443344444444442 22 333 3444555666665544
Q ss_pred CEEEEEeecC----CeEEEEeCCCCeeeec-cccccc--ceEEEEECCCCCeEEEEEcCCcE--EEEec
Q 007229 160 PFRIATCGED----FLVNFYEGPPFKFKLS-HREHSN--FVNCIRFSPDGSKLISVSSDRKG--LIYDG 219 (612)
Q Consensus 160 ~~~l~~~~~d----~~i~~wd~~~~~~~~~-~~~~~~--~v~~~~~s~~~~~l~~~~~dg~i--~vwd~ 219 (612)
. +++....+ ..|..+++.+...... +..+.. .+..+.+. .+.++++...++.. .++++
T Consensus 332 ~-l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 332 H-LVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp E-EEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEEC
T ss_pred E-EEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEec
Confidence 3 45554443 3667777765221122 222333 34555554 23344556667754 45564
No 258
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.98 E-value=1.1e-06 Score=79.42 Aligned_cols=226 Identities=10% Similarity=-0.042 Sum_probs=136.5
Q ss_pred CceeEEEEccCCCEEEEec-CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCc--CeEEEeecCCCceee
Q 007229 19 GRGILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVS--GSVRIWGTHNGFVLK 95 (612)
Q Consensus 19 ~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d--~~i~iwd~~~~~~~~ 95 (612)
.....++++|+|+++++-. ++.|..+|.++. ....+. -...+..++++++|+++++.... ..|..+|..+++ +.
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~-~~ 108 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGT-VE 108 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSC-EE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCe-EE
Confidence 3567899999999666654 689999998764 333332 34578999999999976665432 246677777776 32
Q ss_pred eeeee-cCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCC--c-eeeee---------ccCCceEEEEEEcCCCCEE
Q 007229 96 NEFKV-LSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSG--T-TVGDF---------DGHSRRVLSCEFKPTRPFR 162 (612)
Q Consensus 96 ~~~~~-~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~--~-~~~~~---------~~~~~~v~~~~~~~~~~~~ 162 (612)
..... .......++..+++..+++-...+ .+|.++.. + .+... ...-.....+ +|+++++
T Consensus 109 ~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g-----~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~l 181 (306)
T 2p4o_A 109 TLLTLPDAIFLNGITPLSDTQYLTADSYRG-----AIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFL 181 (306)
T ss_dssp EEEECTTCSCEEEEEESSSSEEEEEETTTT-----EEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEE
T ss_pred EEEeCCCccccCcccccCCCcEEEEECCCC-----eEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEE
Confidence 22211 122334555556554444332233 46666632 1 12100 1111234455 8888877
Q ss_pred EEEeecCCeEEEEeCCC-Cee--eecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEE
Q 007229 163 IATCGEDFLVNFYEGPP-FKF--KLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIY 239 (612)
Q Consensus 163 l~~~~~d~~i~~wd~~~-~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~ 239 (612)
.++-...+.|..+++.. ++. ...+. .......+++.++|++.++....+.|.++|.. ++........ .......
T Consensus 182 yv~d~~~~~I~~~~~~~~g~~~~~~~~~-~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~-~~~~~p~ 258 (306)
T 2p4o_A 182 YVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAE-QGVIGST 258 (306)
T ss_dssp EEEETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGG-GTCTTEE
T ss_pred EEEeCCCCEEEEEEeCCCCCCCccEEEe-ccCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecc-cccCCce
Confidence 77777889999999864 322 11111 11345678999999876665567889999975 6553221111 2235688
Q ss_pred EEEEe---cCCCEEEEEeCCC
Q 007229 240 AVSWS---PDGKKVLTVSADK 257 (612)
Q Consensus 240 ~i~~~---~~~~~l~~~~~dg 257 (612)
+++|. |+++.|+++...+
T Consensus 259 ~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 259 AVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp EEEECCSTTTTTEEEEEECTT
T ss_pred EEEEecccCCCCEEEEECCCC
Confidence 99998 8887777766543
No 259
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.98 E-value=1.7e-06 Score=84.88 Aligned_cols=114 Identities=11% Similarity=0.131 Sum_probs=71.0
Q ss_pred CCeEEEEEc-CCcEEEEec-CCCCeeeeeeccCCcc--------ccEEEEEEecCCCE----EEEEeCCCcEEEEEeecC
Q 007229 202 GSKLISVSS-DRKGLIYDG-KSGEKIGEFSSEDGHH--------GSIYAVSWSPDGKK----VLTVSADKSAKVWEILED 267 (612)
Q Consensus 202 ~~~l~~~~~-dg~i~vwd~-~~~~~~~~~~~~~~~~--------~~v~~i~~~~~~~~----l~~~~~dg~i~iw~~~~~ 267 (612)
+..|++++. ++.|.-+|. .+|+.+-.+....... .....++++|.+.. +++++.|+.|.-+|.
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa--- 138 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNA--- 138 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEET---
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEEC---
Confidence 456777777 889999999 8999887774321110 00123455444444 788888999999999
Q ss_pred CCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEc------CCEEEEEEcCCCCCC
Q 007229 268 GSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSL------GGIISIFSASNLDKA 319 (612)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~ 319 (612)
.+++.+-....................++.+++++. ++.|..+|..+.+..
T Consensus 139 -~TG~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~ 195 (599)
T 1w6s_A 139 -ETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQV 195 (599)
T ss_dssp -TTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEE
T ss_pred -CCCCEEEeecCCCCCccceeecCCEEECCEEEEEecccccCCCCeEEEEECCCCcEE
Confidence 899888776554321111111111223567777664 789999997765543
No 260
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.98 E-value=7.3e-06 Score=75.13 Aligned_cols=246 Identities=8% Similarity=-0.070 Sum_probs=154.8
Q ss_pred ceeEEEEccCCCEEEEecCCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEe-eCcCeEEEeecCCCceeeeee
Q 007229 20 RGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASA-DVSGSVRIWGTHNGFVLKNEF 98 (612)
Q Consensus 20 ~v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~-~~d~~i~iwd~~~~~~~~~~~ 98 (612)
..+|.+..+ ..+|+++..+.|+..+++.......+. ....+..++|++....|..+ ...+.|..+++.... .....
T Consensus 35 ~~~C~~~~~-~~~ll~~~~~~I~~i~~~g~~~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~-~~~~~ 111 (349)
T 3v64_C 35 RRSCKALGP-EPVLLFANRIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSN-VEEVV 111 (349)
T ss_dssp SSCEEESSS-CCEEEEECBSCEEEECTTSCCEEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEE
T ss_pred CCccccccc-CceeEeecccceEEEeCCCCeeEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCC-ceEEE
Confidence 456777777 457777777788888988766555444 34457899999866555544 467889999998765 22222
Q ss_pred eecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecC-CeEEEEeC
Q 007229 99 KVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGED-FLVNFYEG 177 (612)
Q Consensus 99 ~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-~~i~~wd~ 177 (612)
.........+++.+.+..|..+..... .|.+...+.......+.........+++.|.+.+++++-... +.|...++
T Consensus 112 ~~~~~~p~glavd~~~g~ly~~d~~~~--~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~ 189 (349)
T 3v64_C 112 STGLESPGGLAVDWVHDKLYWTDSGTS--RIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSM 189 (349)
T ss_dssp CSSCSCCCEEEEETTTTEEEEEETTTT--EEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred eCCCCCccEEEEecCCCeEEEEcCCCC--eEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeC
Confidence 223345678999987777766655443 344555443332223334446678999999877667776666 88988887
Q ss_pred CCCeeeecccccccceEEEEECCCCCeEEEEEc-CCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCC
Q 007229 178 PPFKFKLSHREHSNFVNCIRFSPDGSKLISVSS-DRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSAD 256 (612)
Q Consensus 178 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d 256 (612)
............-.....++++|++..|+.+.. .+.|..+|+........+. ........+++. ++..+++-...
T Consensus 190 dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~---~~~~~P~giav~-~~~ly~td~~~ 265 (349)
T 3v64_C 190 DGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVIS---QGLPHPFAITVF-EDSLYWTDWHT 265 (349)
T ss_dssp TSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC---SSCSSEEEEEEE-TTEEEEEETTT
T ss_pred CCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEe---CCCCCceEEEEE-CCEEEEecCCC
Confidence 654333223333445789999998777776654 5679999976433322221 223456777873 45555555556
Q ss_pred CcEEEEEeecCCCCCeeEeeee
Q 007229 257 KSAKVWEILEDGSGGRVIKTFA 278 (612)
Q Consensus 257 g~i~iw~~~~~~~~~~~~~~~~ 278 (612)
+.|..++. .+++....+.
T Consensus 266 ~~V~~~~~----~~G~~~~~i~ 283 (349)
T 3v64_C 266 KSINSANK----FTGKNQEIIR 283 (349)
T ss_dssp TEEEEEET----TTCCSCEEEE
T ss_pred CeEEEEEc----cCCCccEEec
Confidence 77777775 4555444443
No 261
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.95 E-value=8.3e-07 Score=89.22 Aligned_cols=279 Identities=11% Similarity=0.045 Sum_probs=168.3
Q ss_pred CCCEEEEecCCEEEEEeCCCCceeeEeccCCCc----------e-EEEEECCCCCEEEEeeCcCeEEEeecCCCceeeee
Q 007229 29 KTDTILYCNGRSVLIRYLDKPLHVEFYGEHGYP----------V-TVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNE 97 (612)
Q Consensus 29 d~~~l~~~~~~~i~i~~~~~~~~~~~~~~h~~~----------v-~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~ 97 (612)
++..++...++.|+-+|.++|+.+=.+...... + ..+++ ++..++.++.|+.|..+|..+++.+...
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 143 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence 444444445789999999999887555432211 0 11222 3557788888999999999999864432
Q ss_pred eeecCCCeEEEEECC--CCCEEEEEeCCC---CeeeEEEEEecCCceeeeeccC---Cc---------------------
Q 007229 98 FKVLSGRIDDLQWSP--DGLRIVACGDGK---GKSFVRAFMWDSGTTVGDFDGH---SR--------------------- 148 (612)
Q Consensus 98 ~~~~~~~i~~~~~s~--~~~~l~~~~~~~---~~~~i~i~~~~~~~~~~~~~~~---~~--------------------- 148 (612)
..........+.-+| .+..++++.... ....+..++..+|+.+..+... ..
T Consensus 144 ~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w 223 (668)
T 1kv9_A 144 QTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYW 223 (668)
T ss_dssp ECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHH
T ss_pred ccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCcccee
Confidence 221111111111122 133444443221 1114666666788888877421 10
Q ss_pred -------eEEEEEEcCCCCEEEEEeecCC-------------------eEEEEeCCCCeeeecccc--cc-------cce
Q 007229 149 -------RVLSCEFKPTRPFRIATCGEDF-------------------LVNFYEGPPFKFKLSHRE--HS-------NFV 193 (612)
Q Consensus 149 -------~v~~~~~~~~~~~~l~~~~~d~-------------------~i~~wd~~~~~~~~~~~~--~~-------~~v 193 (612)
....+++.|+.. +++.+..++ .|..+|..+++.+..++. |. .+.
T Consensus 224 ~~~~gg~~w~~~a~d~~~~-~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~ 302 (668)
T 1kv9_A 224 KLGGGGTVWDSMAYDPELD-LLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQI 302 (668)
T ss_dssp HHCEECCCCSCEEEETTTT-EEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCE
T ss_pred eeCCCCccccceEEcCCCC-EEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCc
Confidence 112468888877 577777665 499999999998877653 22 223
Q ss_pred EEEEECCCCC---eEEEEEcCCcEEEEecCCCCeeeeeeccC---------CccccE-----------------------
Q 007229 194 NCIRFSPDGS---KLISVSSDRKGLIYDGKSGEKIGEFSSED---------GHHGSI----------------------- 238 (612)
Q Consensus 194 ~~~~~s~~~~---~l~~~~~dg~i~vwd~~~~~~~~~~~~~~---------~~~~~v----------------------- 238 (612)
....+..+|+ .++.++.+|.++++|..+|+.+....... ....++
T Consensus 303 ~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~ 382 (668)
T 1kv9_A 303 TLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHN 382 (668)
T ss_dssp EEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSC
T ss_pred EEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccC
Confidence 3333334665 68889999999999999999884432110 000000
Q ss_pred -EEEEEecCCCEEEEEe------------------------------------CCCcEEEEEeecCCCCCeeEeeeeccC
Q 007229 239 -YAVSWSPDGKKVLTVS------------------------------------ADKSAKVWEILEDGSGGRVIKTFASST 281 (612)
Q Consensus 239 -~~i~~~~~~~~l~~~~------------------------------------~dg~i~iw~~~~~~~~~~~~~~~~~~~ 281 (612)
..++++|+...+++.. .+|.|..||+ .+++.+-......
T Consensus 383 w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~----~tG~~~W~~~~~~ 458 (668)
T 1kv9_A 383 WHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDP----VKQKAAWKVPYPT 458 (668)
T ss_dssp SSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEET----TTTEEEEEEEESS
T ss_pred CCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeC----CCCcEEEEccCCC
Confidence 1267888766655421 2377899999 8888877665432
Q ss_pred ccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCC
Q 007229 282 SNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDK 318 (612)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 318 (612)
.. ....+...++.+++++.++.++.||....+.
T Consensus 459 ~~----~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~ 491 (668)
T 1kv9_A 459 HW----NGGTLSTAGNLVFQGTAAGQMHAYSADKGEA 491 (668)
T ss_dssp SC----CCCEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred CC----cCceeEeCCCEEEEECCcccchhhhhhcChh
Confidence 11 1122334588999999999999999765544
No 262
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.94 E-value=4.2e-06 Score=77.97 Aligned_cols=245 Identities=8% Similarity=-0.071 Sum_probs=153.2
Q ss_pred eeEEEEccCCCEEEEecCCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEE-EeeCcCeEEEeecCCCceeeeeee
Q 007229 21 GILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIA-SADVSGSVRIWGTHNGFVLKNEFK 99 (612)
Q Consensus 21 v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~la-s~~~d~~i~iwd~~~~~~~~~~~~ 99 (612)
..|.+..+ ..+|+++..+.|+..++........+. ....+..++|.+.+..|. +-...+.|..+++.... ....+.
T Consensus 79 ~~C~~~~~-~~~l~~~~~~~I~~i~~~~~~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~-~~~~~~ 155 (386)
T 3v65_B 79 RSCKALGP-EPVLLFANRIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSN-VEEVVS 155 (386)
T ss_dssp SCEEECSS-CCEEEEECBSCEEEECTTSCCCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC-EEEEEC
T ss_pred CeECCccc-cceeEeecCccceeeccCCCcEEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCC-cEEEEe
Confidence 34556555 557777777889999998776655444 345678999998655555 44567889999998765 222232
Q ss_pred ecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecC-CeEEEEeCC
Q 007229 100 VLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGED-FLVNFYEGP 178 (612)
Q Consensus 100 ~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-~~i~~wd~~ 178 (612)
........+++.+.+..|..+..... .|.+...+.......+.........+++.|.+.+++++-... +.|...++.
T Consensus 156 ~~~~~p~glavd~~~g~lY~~d~~~~--~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~d 233 (386)
T 3v65_B 156 TGLESPGGLAVDWVHDKLYWTDSGTS--RIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD 233 (386)
T ss_dssp SSCSCCCCEEEETTTTEEEEEETTTT--EEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred CCCCCccEEEEEeCCCeEEEEcCCCC--eEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCC
Confidence 23345678899987777766655443 233333333222223333446778999999888666666555 788888876
Q ss_pred CCeeeecccccccceEEEEECCCCCeEEEEEc-CCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCC
Q 007229 179 PFKFKLSHREHSNFVNCIRFSPDGSKLISVSS-DRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADK 257 (612)
Q Consensus 179 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg 257 (612)
...........-.....|+++|++..|+.+.. .+.|..+|+........+. ........+++. ++..+++-...+
T Consensus 234 G~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~---~~~~~P~giav~-~~~ly~td~~~~ 309 (386)
T 3v65_B 234 GSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVIS---QGLPHPFAITVF-EDSLYWTDWHTK 309 (386)
T ss_dssp SCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEEC---SSCSSEEEEEEE-TTEEEEEETTTT
T ss_pred CCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEE---CCCCCceEEEEE-CCEEEEeeCCCC
Confidence 54333222233445789999987777776654 5778899976433332221 223456778883 455555555667
Q ss_pred cEEEEEeecCCCCCeeEeeee
Q 007229 258 SAKVWEILEDGSGGRVIKTFA 278 (612)
Q Consensus 258 ~i~iw~~~~~~~~~~~~~~~~ 278 (612)
.|..++. .+++....+.
T Consensus 310 ~V~~~~~----~~G~~~~~i~ 326 (386)
T 3v65_B 310 SINSANK----FTGKNQEIIR 326 (386)
T ss_dssp EEEEEET----TTCCSCEEEE
T ss_pred eEEEEEC----CCCcceEEEc
Confidence 7888875 4555555444
No 263
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.92 E-value=4e-07 Score=76.89 Aligned_cols=193 Identities=11% Similarity=0.114 Sum_probs=126.9
Q ss_pred eeeEeccCCCc--eEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeee
Q 007229 51 HVEFYGEHGYP--VTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSF 128 (612)
Q Consensus 51 ~~~~~~~h~~~--v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~ 128 (612)
.+..+ .|... ...+.|+ ++.+..+.+.+|.|+++|+++++.+.. + -..........++++.|........ .
T Consensus 45 Vv~~~-phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~-~--l~~~~FgeGit~~g~~Ly~ltw~~~--~ 117 (268)
T 3nok_A 45 IIREY-PHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWM-E--RLGNIFAEGLASDGERLYQLTWTEG--L 117 (268)
T ss_dssp EEEEE-ECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEE-E--ECTTCCEEEEEECSSCEEEEESSSC--E
T ss_pred EEEEE-cCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeE-E--CCCCcceeEEEEeCCEEEEEEccCC--E
Confidence 34444 45433 4788887 467777888889999999999985443 3 2233333223334556665554443 3
Q ss_pred EEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccc--cc---cceEEEEECCCCC
Q 007229 129 VRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHRE--HS---NFVNCIRFSPDGS 203 (612)
Q Consensus 129 i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~--~~---~~v~~~~~s~~~~ 203 (612)
+.+++.++.+.+.+++..... ..+ .++++. |+.+..++.|.++|.++.+.+.++.- +. ..++.+.|. +|+
T Consensus 118 v~V~D~~Tl~~~~ti~~~~eG-wGL--t~Dg~~-L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~ 192 (268)
T 3nok_A 118 LFTWSGMPPQRERTTRYSGEG-WGL--CYWNGK-LVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGV 192 (268)
T ss_dssp EEEEETTTTEEEEEEECSSCC-CCE--EEETTE-EEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE
T ss_pred EEEEECCcCcEEEEEeCCCce-eEE--ecCCCE-EEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCE
Confidence 666677789999888753322 333 356775 44445688999999999988877543 22 235667776 675
Q ss_pred eEEEEEcCCcEEEEecCCCCeeeeeecc----------CCccccEEEEEEecCCCEEEEEeC
Q 007229 204 KLISVSSDRKGLIYDGKSGEKIGEFSSE----------DGHHGSIYAVSWSPDGKKVLTVSA 255 (612)
Q Consensus 204 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~----------~~~~~~v~~i~~~~~~~~l~~~~~ 255 (612)
..+..-.+..|.+.|.++++.+..+... .........|+++|+++.|++.+.
T Consensus 193 lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 193 IYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp EEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred EEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 4444435789999999999998887532 012246789999998777776654
No 264
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.91 E-value=1.3e-06 Score=85.92 Aligned_cols=195 Identities=7% Similarity=0.003 Sum_probs=112.7
Q ss_pred CCeEEEEEc-CCcEEEEec-CCCCeeeeeeccCCccc-------c-EEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCC
Q 007229 202 GSKLISVSS-DRKGLIYDG-KSGEKIGEFSSEDGHHG-------S-IYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGG 271 (612)
Q Consensus 202 ~~~l~~~~~-dg~i~vwd~-~~~~~~~~~~~~~~~~~-------~-v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~ 271 (612)
+..++.++. ++.|.-+|. ++|+.+-.+........ . -..++. .+..+++++.|+.+..+|. .++
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~----~tG 135 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDA----KTG 135 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEET----TTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEEC----CCC
Confidence 456777777 889999999 89998877642211000 0 011233 2556788888999999999 899
Q ss_pred eeEeeeeccCccccceeeeeeeccCCEEEEEEc------CCEEEEEEcCCCCCCceeecCcc------------------
Q 007229 272 RVIKTFASSTSNAVEDMLVGCLWQNDHLITVSL------GGIISIFSASNLDKAPLSFSGHV------------------ 327 (612)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~~~~~~~~~------------------ 327 (612)
+.+-.+..................++.++++.. ++.+..+|..+.+..........
T Consensus 136 ~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G 215 (571)
T 2ad6_A 136 KINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYG 215 (571)
T ss_dssp CEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGC
T ss_pred CEEEEecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccccc
Confidence 888776654311110111111223667777776 68999999776554322211100
Q ss_pred ------------------cce-eEEEEEecCCcEEEEEecC----------------CcEEEEEcCCceeeeecee--c-
Q 007229 328 ------------------KNV-STLTALKISQQTILSSSYD----------------GAIIKWIRGVGYSSKLEKK--Y- 369 (612)
Q Consensus 328 ------------------~~v-~~~~~~~~~~~~l~~~~~d----------------g~i~~wd~~~~~~~~~~~~--~- 369 (612)
..+ ..+++. .....++.+..+ +.|..+|..+++..-.... +
T Consensus 216 ~~~~g~~~w~~~~~~~gg~~~w~~~a~d-~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d 294 (571)
T 2ad6_A 216 QFGLGTKTWEGDAWKIGGGTNWGWYAYD-PKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHD 294 (571)
T ss_dssp CSSHHHHTSSTTGGGGCCCCCCSCCEEE-TTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTC
T ss_pred ccccccccCcccceecCCCCeeeeEEEc-CCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCc
Confidence 000 112333 224555555432 3589999998887654432 1
Q ss_pred -------ccceE-EEEeec---cEEEEecCCCeEEEEecCCCCCC
Q 007229 370 -------DARIK-CLAAVE---EVIFTAGFDNKVWRVPLCEGECG 403 (612)
Q Consensus 370 -------~~~i~-~~~~~~---~~l~~~~~~~~i~~~~~~~~~~~ 403 (612)
..++. ....++ ..++.++.+|.+..+|..+++..
T Consensus 295 ~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~ 339 (571)
T 2ad6_A 295 EWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLI 339 (571)
T ss_dssp SSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEE
T ss_pred ccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEE
Confidence 12221 111234 35677888999999999888754
No 265
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.91 E-value=1.5e-05 Score=71.93 Aligned_cols=238 Identities=11% Similarity=-0.073 Sum_probs=145.5
Q ss_pred CEEEEecCCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEe-eCcCeEEEeecCCC---ceeeeeeeecCCCeE
Q 007229 31 DTILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASA-DVSGSVRIWGTHNG---FVLKNEFKVLSGRID 106 (612)
Q Consensus 31 ~~l~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~-~~d~~i~iwd~~~~---~~~~~~~~~~~~~i~ 106 (612)
.+|+++..+.|+..|+++.+....+. .-..+..++|+++++.|..+ ..++.|..+++.+. ......+...-....
T Consensus 2 ~~ll~~~~~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 80 (316)
T 1ijq_A 2 AYLFFTNRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 80 (316)
T ss_dssp CEEEEECBSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred CEEEEECCCeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcC
Confidence 36788888889999999877665444 44567899999876555544 45689999998861 212222222224568
Q ss_pred EEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecC-CeEEEEeCCCCeeeec
Q 007229 107 DLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGED-FLVNFYEGPPFKFKLS 185 (612)
Q Consensus 107 ~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-~~i~~wd~~~~~~~~~ 185 (612)
.+++.+.+..|..+..... .|.+...+.......+.........+++.|.+.+++++.... +.|...++........
T Consensus 81 glavd~~~~~ly~~d~~~~--~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~ 158 (316)
T 1ijq_A 81 GLAVDWIHSNIYWTDSVLG--TVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL 158 (316)
T ss_dssp EEEEETTTTEEEEEETTTT--EEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEE
T ss_pred EEEEeecCCeEEEEECCCC--EEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEE
Confidence 8999887766666544433 355555543332222333445778999999777656665443 7888888754322211
Q ss_pred ccccccceEEEEECCCCCeEEEEEc-CCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEe
Q 007229 186 HREHSNFVNCIRFSPDGSKLISVSS-DRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 186 ~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~ 264 (612)
....-.....++++|++..|+.+.. .+.|..+|+.. .....+............+++. .+..+++-...+.|..++.
T Consensus 159 ~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg-~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~ 236 (316)
T 1ijq_A 159 VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG-GNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANR 236 (316)
T ss_dssp ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEET
T ss_pred EECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCC-CceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeC
Confidence 2223356789999998877776654 56899999864 3333332111123345678875 3555555556678888886
Q ss_pred ecCCCCCeeEeee
Q 007229 265 LEDGSGGRVIKTF 277 (612)
Q Consensus 265 ~~~~~~~~~~~~~ 277 (612)
.+++.+..+
T Consensus 237 ----~~g~~~~~i 245 (316)
T 1ijq_A 237 ----LTGSDVNLL 245 (316)
T ss_dssp ----TTCCCCEEE
T ss_pred ----CCCcceEEE
Confidence 555554444
No 266
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.88 E-value=1.4e-06 Score=85.54 Aligned_cols=306 Identities=10% Similarity=-0.007 Sum_probs=159.4
Q ss_pred CCEEEEEEc-CCEEEEEEc-CCCCCCceeecCccc---------c-eeEEEEEecCCcEEEEEecCCcEEEEEcCCceee
Q 007229 296 NDHLITVSL-GGIISIFSA-SNLDKAPLSFSGHVK---------N-VSTLTALKISQQTILSSSYDGAIIKWIRGVGYSS 363 (612)
Q Consensus 296 ~~~~~~~~~-~~~i~~~~~-~~~~~~~~~~~~~~~---------~-v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~ 363 (612)
++.+++++. ++.+.-+|. .+.+.....-..... . ...+++. +..++.++.|+.+..+|..+++..
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~v~~~dg~l~alD~~tG~~~ 138 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG---AGQIVKKQANGHLLALDAKTGKIN 138 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE---TTEEEEECTTSEEEEEETTTCCEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEE---CCEEEEEeCCCEEEEEECCCCCEE
Confidence 666777777 777888886 444432221111100 0 0112222 678888889999999999998876
Q ss_pred eeceecc----cceE-EEEeeccEEEEecC------CCeEEEEecCCCCCCccceeccCCCcceeeecCCCCc-EEEEE-
Q 007229 364 KLEKKYD----ARIK-CLAAVEEVIFTAGF------DNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPE-LALVS- 430 (612)
Q Consensus 364 ~~~~~~~----~~i~-~~~~~~~~l~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~- 430 (612)
-...... ..+. .....++.++.+.. ++.+..+|..+++..-..... .........|.... ..+.+
T Consensus 139 W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~--~~~~~~~~~p~~~~~~~~~G~ 216 (571)
T 2ad6_A 139 WEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFAT--GSDDSVRLAKDFNSANPHYGQ 216 (571)
T ss_dssp EEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESS--SCHHHHTBCTTTTTTCGGGCC
T ss_pred EEecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccC--CCccccccCcccccccccccc
Confidence 5433211 0121 11124566666655 789999999887753211111 00000000000000 00000
Q ss_pred eeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecC----------------CeEEEEEccCcccccceeecccc
Q 007229 431 TESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQN----------------GKLHIYSISGNTLTEEMVLEKHR 494 (612)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d----------------g~v~i~d~~~~~~~~~~~~~~~~ 494 (612)
...+...|.. ... ..........+++.++...++.+..+ +.|..+|.++++..-......|.
T Consensus 217 ~~~g~~~w~~-~~~-~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d 294 (571)
T 2ad6_A 217 FGLGTKTWEG-DAW-KIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHD 294 (571)
T ss_dssp SSHHHHTSST-TGG-GGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTC
T ss_pred cccccccCcc-cce-ecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCc
Confidence 0000000000 000 00000001234556655566555432 35888898888764333333222
Q ss_pred --------CceEEEEEcCCCc---EEEEEcCCCeEEEEecCCcceeeeccccc------------ccce-----------
Q 007229 495 --------GAITVIQYSPDVS---MFASADGNREAIVWDRVSKEVKLNNMLFH------------TARI----------- 540 (612)
Q Consensus 495 --------~~i~~~~~s~~~~---~l~~~~~d~~i~iwd~~~~~~~~~~~~~~------------~~~i----------- 540 (612)
.++. +...++|+ .++.++.+|.++++|..+++.+....... ..++
T Consensus 295 ~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~ 373 (571)
T 2ad6_A 295 EWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDH 373 (571)
T ss_dssp SSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTC
T ss_pred ccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCC
Confidence 2222 22334774 67788999999999999998865432211 0111
Q ss_pred ---------------eEEEecCCCcEEEEee-------------------------------------cCcEEEEEEccC
Q 007229 541 ---------------NCLAWSPSSTMVATGS-------------------------------------IDTCVIIYEIGK 568 (612)
Q Consensus 541 ---------------~~~~~s~~~~~l~s~~-------------------------------------~d~~i~iwd~~~ 568 (612)
..++++|+..+|.+.. .++.|..||..+
T Consensus 374 ~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~t 453 (571)
T 2ad6_A 374 KGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTT 453 (571)
T ss_dssp CEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTT
T ss_pred CceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCC
Confidence 2467888877776653 357899999988
Q ss_pred CCcceeeeecccccCeeeEEEe-cCceEEEccCCCeEEEEEeccC
Q 007229 569 PASSRITIKNAHLGGVYGVAFM-DDFNVVSSGEDACIRVWRLATE 612 (612)
Q Consensus 569 ~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~~~d~~i~~w~~~~~ 612 (612)
+ +.+-... +...+...... .+..++.++.||.|+.||.+++
T Consensus 454 -G-~~~W~~~-~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG 495 (571)
T 2ad6_A 454 -G-KAKWTKW-EKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDG 495 (571)
T ss_dssp -C-CEEEEEE-ESSCCCSBCEEETTTEEEEECTTSEEEEEETTTC
T ss_pred -C-CEEEEec-CCCCccceeEEECCCEEEEEcCCCeEEEEECCCC
Confidence 4 3333332 22233333344 5777888899999999998764
No 267
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.87 E-value=6.5e-06 Score=70.25 Aligned_cols=196 Identities=7% Similarity=0.008 Sum_probs=136.7
Q ss_pred CCceeEEEEccCCCEEEEec--CCEEEEEeCCCCceeeEec-cCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCcee
Q 007229 18 RGRGILISGNPKTDTILYCN--GRSVLIRYLDKPLHVEFYG-EHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVL 94 (612)
Q Consensus 18 ~~~v~~~~~s~d~~~l~~~~--~~~i~i~~~~~~~~~~~~~-~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~ 94 (612)
.+.+..++++|+++.|++.. ++.|...|.. ++.++.+. +-......+++.+++.++++.-.++.+.++++.....+
T Consensus 26 ~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i 104 (255)
T 3qqz_A 26 TNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEV 104 (255)
T ss_dssp CSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCE
T ss_pred ccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCee
Confidence 35799999999988777655 5789999998 77777653 22356788999999988777767788999988765421
Q ss_pred --eeeee------ecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec---CCceeeee-------ccCCceEEEEEEc
Q 007229 95 --KNEFK------VLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD---SGTTVGDF-------DGHSRRVLSCEFK 156 (612)
Q Consensus 95 --~~~~~------~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~---~~~~~~~~-------~~~~~~v~~~~~~ 156 (612)
..... ........++|.|+++.|.++.+... ..++.++ ....+..+ ..+...+..++++
T Consensus 105 ~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p---~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~d 181 (255)
T 3qqz_A 105 KILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNP---IEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFN 181 (255)
T ss_dssp EEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSS---EEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEE
T ss_pred eeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCC---ceEEEEcccccCCceeeecchhhccccccCCceeEEEc
Confidence 11111 23446789999999988888777663 3677776 11112221 1233467899999
Q ss_pred CCCCEEEEEeecCCeEEEEeCCCCeeeec--cc-cc------ccceEEEEECCCCCeEEEEEcCCcEEEEec
Q 007229 157 PTRPFRIATCGEDFLVNFYEGPPFKFKLS--HR-EH------SNFVNCIRFSPDGSKLISVSSDRKGLIYDG 219 (612)
Q Consensus 157 ~~~~~~l~~~~~d~~i~~wd~~~~~~~~~--~~-~~------~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~ 219 (612)
|....+++.....+.+..+|.... .+.. +. +. -.....|+|.++|+ |+..++.+.++.+.-
T Consensus 182 p~tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE~n~~y~f~~ 251 (255)
T 3qqz_A 182 QQKNTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSEPNRFYRFTP 251 (255)
T ss_dssp TTTTEEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEETTTEEEEEEC
T ss_pred CCCCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcCCceEEEEEe
Confidence 998878888888899999997644 4433 22 11 13678999999997 555577776666653
No 268
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.83 E-value=1.6e-06 Score=73.32 Aligned_cols=193 Identities=9% Similarity=-0.032 Sum_probs=123.1
Q ss_pred eEeeeeeccCCCCCCCceeEEEEccCCCEEEEec-C--CEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEE-eeC
Q 007229 4 VHLSETYACAPSTERGRGILISGNPKTDTILYCN-G--RSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIAS-ADV 79 (612)
Q Consensus 4 ~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~-~--~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las-~~~ 79 (612)
+..-+.++-.+ +.-...+.|+ ++.+..+.+ . +.|+++|+++++.++.+.-. .......+.++++.|.. .-.
T Consensus 31 ~~vv~~~phd~---~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~-~~~FgeGit~~g~~ly~ltw~ 105 (262)
T 3nol_A 31 YQIVHSYPHDT---KAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELG-KRYFGEGISDWKDKIVGLTWK 105 (262)
T ss_dssp EEEEEEEECCT---TCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECC-TTCCEEEEEEETTEEEEEESS
T ss_pred eEEEEEecCCC---CcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecC-CccceeEEEEeCCEEEEEEee
Confidence 34444555444 3344678898 665444444 3 49999999999998877543 23333333334444444 446
Q ss_pred cCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccC--C---ceEEEEE
Q 007229 80 SGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGH--S---RRVLSCE 154 (612)
Q Consensus 80 d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~--~---~~v~~~~ 154 (612)
++.+.++|..+.+. ..++.... ....+++|++.|+.....+ .+.+.+-.+.+.+..+.-. . ..+..+.
T Consensus 106 ~~~v~v~D~~t~~~-~~ti~~~~---eG~glt~dg~~L~~SdGs~---~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe 178 (262)
T 3nol_A 106 NGLGFVWNIRNLRQ-VRSFNYDG---EGWGLTHNDQYLIMSDGTP---VLRFLDPESLTPVRTITVTAHGEELPELNELE 178 (262)
T ss_dssp SSEEEEEETTTCCE-EEEEECSS---CCCCEEECSSCEEECCSSS---EEEEECTTTCSEEEEEECEETTEECCCEEEEE
T ss_pred CCEEEEEECccCcE-EEEEECCC---CceEEecCCCEEEEECCCC---eEEEEcCCCCeEEEEEEeccCCccccccceeE
Confidence 88999999999984 44554322 2234446788777765333 3444444467777776432 2 2344567
Q ss_pred EcCCCCEEEEEeecCCeEEEEeCCCCeeeeccccc------------ccceEEEEECCCCCeEEEEEc
Q 007229 155 FKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREH------------SNFVNCIRFSPDGSKLISVSS 210 (612)
Q Consensus 155 ~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~------------~~~v~~~~~s~~~~~l~~~~~ 210 (612)
+. +|. +.+..-.+..|.+.|.++++.+..+.-. ..-.+.|||+|+++.|++.+.
T Consensus 179 ~~-~G~-lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 179 WV-DGE-IFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp EE-TTE-EEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred EE-CCE-EEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 76 564 5666667889999999999987765321 135689999999988887775
No 269
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.83 E-value=4.9e-06 Score=81.61 Aligned_cols=278 Identities=10% Similarity=-0.007 Sum_probs=163.4
Q ss_pred CCCEEEEec-CCEEEEEeC-CCCceeeEeccCCC-----------ceEEEEECCCCCE----EEEeeCcCeEEEeecCCC
Q 007229 29 KTDTILYCN-GRSVLIRYL-DKPLHVEFYGEHGY-----------PVTVARYSPNGEW----IASADVSGSVRIWGTHNG 91 (612)
Q Consensus 29 d~~~l~~~~-~~~i~i~~~-~~~~~~~~~~~h~~-----------~v~~~~~s~d~~~----las~~~d~~i~iwd~~~~ 91 (612)
++..++... ++.|+-+|. ++|+.+=.+..... ....++++|++.. |+.++.|+.|.-+|..++
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 444444444 688999999 89987644432211 0123566554434 777888999999999999
Q ss_pred ceeeeeeee-cCC--CeEE-EEECCCCCEEEEEeC------CCCeeeEEEEEecCCceeeeeccCCce------------
Q 007229 92 FVLKNEFKV-LSG--RIDD-LQWSPDGLRIVACGD------GKGKSFVRAFMWDSGTTVGDFDGHSRR------------ 149 (612)
Q Consensus 92 ~~~~~~~~~-~~~--~i~~-~~~s~~~~~l~~~~~------~~~~~~i~i~~~~~~~~~~~~~~~~~~------------ 149 (612)
+.+.+.-.. +.. .+.+ ... .++ .+++++. ++ .+..++..+|+.+..+......
T Consensus 142 ~~~W~~~~~~~~~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g---~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~ 216 (599)
T 1w6s_A 142 ETVWKVENSDIKVGSTLTIAPYV-VKD-KVIIGSSGAELGVRG---YLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIK 216 (599)
T ss_dssp CEEEEEECCCGGGTCBCCSCCEE-ETT-EEEECCBCGGGTCCC---EEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTT
T ss_pred CEEEeecCCCCCccceeecCCEE-ECC-EEEEEecccccCCCC---eEEEEECCCCcEEEEEcCCCCccccccccccccc
Confidence 864432111 100 1111 011 144 4444432 22 4666666788888776533211
Q ss_pred -------------------------E-EEEEEcCCCCEEEEEeecC----------------CeEEEEeCCCCeeeeccc
Q 007229 150 -------------------------V-LSCEFKPTRPFRIATCGED----------------FLVNFYEGPPFKFKLSHR 187 (612)
Q Consensus 150 -------------------------v-~~~~~~~~~~~~l~~~~~d----------------~~i~~wd~~~~~~~~~~~ 187 (612)
+ ..+++.++.. +++.+..+ +.|.-+|..+++.+..++
T Consensus 217 ~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g-~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q 295 (599)
T 1w6s_A 217 NPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTN-LIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQ 295 (599)
T ss_dssp CGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTT-EEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEE
T ss_pred cccccccccccccCCCcceecCCCccccceeEeCCCC-EEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEee
Confidence 0 1345666666 46665544 489999999999887755
Q ss_pred ccc----------cceEEEEEC-CCC---CeEEEEEcCCcEEEEecCCCCeeeeeeccC----------CccccE-----
Q 007229 188 EHS----------NFVNCIRFS-PDG---SKLISVSSDRKGLIYDGKSGEKIGEFSSED----------GHHGSI----- 238 (612)
Q Consensus 188 ~~~----------~~v~~~~~s-~~~---~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~----------~~~~~v----- 238 (612)
... .++. +... .+| +.++.++.+|.+.++|.++|+.+....... ....++
T Consensus 296 ~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~ 374 (599)
T 1w6s_A 296 KTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEY 374 (599)
T ss_dssp SSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGG
T ss_pred cCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeecccc
Confidence 321 1222 2222 467 467778899999999999999887653211 011111
Q ss_pred ---------------------EEEEEecCCCEEEEEe---------------------------------------CCCc
Q 007229 239 ---------------------YAVSWSPDGKKVLTVS---------------------------------------ADKS 258 (612)
Q Consensus 239 ---------------------~~i~~~~~~~~l~~~~---------------------------------------~dg~ 258 (612)
..++++|+..++++.. ..|.
T Consensus 375 ~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~ 454 (599)
T 1w6s_A 375 GTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQ 454 (599)
T ss_dssp CCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEE
T ss_pred CCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCe
Confidence 2456777766655532 2356
Q ss_pred EEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCce
Q 007229 259 AKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPL 321 (612)
Q Consensus 259 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 321 (612)
|.-||+ .+++.+-........ .--.+...++.++.++.++.++.||..+.+....
T Consensus 455 l~A~D~----~tG~~~W~~~~~~~~----~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~ 509 (599)
T 1w6s_A 455 IKAYNA----ITGDYKWEKMERFAV----WGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWK 509 (599)
T ss_dssp EEEECT----TTCCEEEEEEESSCC----CSBCEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred EEEEEC----CCCCEEeEecCCCCc----cCcceEecCCEEEEECCCCeEEEEECCCCCEEEE
Confidence 777777 777766655433110 0011233478889999999999999777654433
No 270
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.82 E-value=1.6e-06 Score=88.79 Aligned_cols=231 Identities=7% Similarity=0.022 Sum_probs=130.0
Q ss_pred cCCCEEEEec--CC----EEEEEeC---CCC--ceeeEe------ccCCC-ceEEEEEC-CCCCEEEEeeC-c----CeE
Q 007229 28 PKTDTILYCN--GR----SVLIRYL---DKP--LHVEFY------GEHGY-PVTVARYS-PNGEWIASADV-S----GSV 83 (612)
Q Consensus 28 ~d~~~l~~~~--~~----~i~i~~~---~~~--~~~~~~------~~h~~-~v~~~~~s-~d~~~las~~~-d----~~i 83 (612)
++|.++++.. ++ .++..+. ..+ .....+ .+|.. .+...+|| |||++||.+.. + .+|
T Consensus 124 ~~g~~~yy~~~~~g~~~~vl~r~~~~~~~~~~~~~~vlld~n~~a~~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l 203 (751)
T 2xe4_A 124 VYGKYRYYTREVKGKPYKIYCRVFTDKEPGDVAAEEVIIDVNQVAEGKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTI 203 (751)
T ss_dssp EETTEEEEEEECTTCCSCEEEEEETTSCTTCTTTCEEEEEHHHHTTTCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEE
T ss_pred EECCEEEEEEECCCCceeEEEEEcCCCCCCCCcCCEEEechhHhccCCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEE
Confidence 6788887764 22 3444444 332 222223 23443 78899999 99999986532 2 359
Q ss_pred EEeecCCC-ceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec--CCc--eeeeec-cCCceEEEEEEcC
Q 007229 84 RIWGTHNG-FVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD--SGT--TVGDFD-GHSRRVLSCEFKP 157 (612)
Q Consensus 84 ~iwd~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~--~~~--~~~~~~-~~~~~v~~~~~~~ 157 (612)
+++|+.++ +.+...+.. ....++|+|||+.|+....+.....-+||.++ ++. ....+. ........+.|+|
T Consensus 204 ~v~dl~~g~~~l~~~~~~---~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~Sp 280 (751)
T 2xe4_A 204 EFKRISDPSQTIADKVSG---TNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAA 280 (751)
T ss_dssp EEEETTCTTCCCCCCEEE---ECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECT
T ss_pred EEEECCCCCEeCCccccC---ceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECC
Confidence 99999998 633222222 24578999999999888765332223566665 332 122222 2334567889999
Q ss_pred CCCEEEEEeec--CCeEEEEeCCCC--ee--eecccccccceEEEEECCCCCeEEEEEc-C----CcEEEEecCCCCeee
Q 007229 158 TRPFRIATCGE--DFLVNFYEGPPF--KF--KLSHREHSNFVNCIRFSPDGSKLISVSS-D----RKGLIYDGKSGEKIG 226 (612)
Q Consensus 158 ~~~~~l~~~~~--d~~i~~wd~~~~--~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d----g~i~vwd~~~~~~~~ 226 (612)
||++++++... ...|.++|+.++ +. ............++.|+. |+.|+..+. + ..|..+++.++....
T Consensus 281 Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~ 359 (751)
T 2xe4_A 281 DTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWS 359 (751)
T ss_dssp TSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTSTTCCC
T ss_pred CCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCCcccce
Confidence 99976665543 346788888765 22 222333445555665544 555554443 3 256667766532222
Q ss_pred e-eeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEe
Q 007229 227 E-FSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 227 ~-~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~ 264 (612)
. +. .......+..+.+. .+.++++...++..++|-+
T Consensus 360 ~~li-~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~ 396 (751)
T 2xe4_A 360 HVLV-DHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTM 396 (751)
T ss_dssp CEEE-CCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEE
T ss_pred eeEE-CCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEE
Confidence 2 21 11122244555554 3344555666776666554
No 271
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.81 E-value=3.9e-06 Score=70.40 Aligned_cols=202 Identities=12% Similarity=0.073 Sum_probs=129.5
Q ss_pred eeeEeccCC--CceEEEEECCCCCEEEEeeCc--CeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCe
Q 007229 51 HVEFYGEHG--YPVTVARYSPNGEWIASADVS--GSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGK 126 (612)
Q Consensus 51 ~~~~~~~h~--~~v~~~~~s~d~~~las~~~d--~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~ 126 (612)
.+..+ .|. .-...+.|++ +.+..+.+.+ ..|+++|+.+++.+ ..... ..........+++..|........
T Consensus 11 v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~-~~~~l-~~~~fgeGi~~~~~~ly~ltw~~~- 85 (243)
T 3mbr_X 11 VVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRIL-QRAEV-PPPYFGAGIVAWRDRLIQLTWRNH- 85 (243)
T ss_dssp EEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEE-EEEEC-CTTCCEEEEEEETTEEEEEESSSS-
T ss_pred EEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEE-EEEeC-CCCcceeEEEEeCCEEEEEEeeCC-
Confidence 34444 454 3467899987 5666666665 48999999999843 33332 223333333334666666654443
Q ss_pred eeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccc-----cceEEEEECCC
Q 007229 127 SFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHS-----NFVNCIRFSPD 201 (612)
Q Consensus 127 ~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~-----~~v~~~~~s~~ 201 (612)
.+.+++.++.+.+.+++..... ..+ .+++..++++ ..++.|.++|..+.+.+.++.-.. ..++.+.+. +
T Consensus 86 -~v~v~D~~tl~~~~ti~~~~~G-wgl--t~dg~~L~vS-dgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~ 159 (243)
T 3mbr_X 86 -EGFVYDLATLTPRARFRYPGEG-WAL--TSDDSHLYMS-DGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-N 159 (243)
T ss_dssp -EEEEEETTTTEEEEEEECSSCC-CEE--EECSSCEEEE-CSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-T
T ss_pred -EEEEEECCcCcEEEEEeCCCCc-eEE--eeCCCEEEEE-CCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-C
Confidence 3566666688999888754332 333 4566644555 458899999999998877754321 245666765 6
Q ss_pred CCeEEEEEcCCcEEEEecCCCCeeeeeeccC----------CccccEEEEEEecCCCEEEEEeCCCcEEEEEe
Q 007229 202 GSKLISVSSDRKGLIYDGKSGEKIGEFSSED----------GHHGSIYAVSWSPDGKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 202 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~----------~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~ 264 (612)
|+..+..-.+..|.+.|.++|+.+..+.... ........|+++|+++.|++.+.. -=++|.+
T Consensus 160 G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~-wp~~~~v 231 (243)
T 3mbr_X 160 GELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKR-WPMLYEI 231 (243)
T ss_dssp TEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETT-CSEEEEE
T ss_pred CEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCC-CCcEEEE
Confidence 6544444357899999999999988875321 123467899999988877777653 2344444
No 272
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.81 E-value=7.6e-05 Score=67.74 Aligned_cols=227 Identities=13% Similarity=0.065 Sum_probs=132.8
Q ss_pred CCceeEEEEccCCCEEEEecCCEEEEEeCCCCceeeEec----cCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCce
Q 007229 18 RGRGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYG----EHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFV 93 (612)
Q Consensus 18 ~~~v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~~~----~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~ 93 (612)
...+.++.|.+++..++++..+.| +...+.++.-..+. .....+.++.|.+ ++.++. +.++.|.. ....++.
T Consensus 35 ~~~~~~v~~~~~~~~~~~G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~~-g~~g~i~~-S~DgG~t 110 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWLVGVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWIV-GEPPIMLH-TTDGGQS 110 (327)
T ss_dssp SSCEEEEEESSSSCEEEEETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEEE-EETTEEEE-ESSTTSS
T ss_pred CCcEEEEEECCCCcEEEEcCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEEE-ECCCeEEE-ECCCCCC
Confidence 347899999988888888777765 44455554322221 2345789999986 444554 45664443 2233332
Q ss_pred eeeeee---ecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeee-ccCCceEEEEEEcCCCCEEEEEeecC
Q 007229 94 LKNEFK---VLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDF-DGHSRRVLSCEFKPTRPFRIATCGED 169 (612)
Q Consensus 94 ~~~~~~---~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~d 169 (612)
-.... .+.+.+..+.+.++++.++++. .+. .....|.|+.-... ..+...+..+++.|++. +++.+...
T Consensus 111 -W~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~g~----v~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~-~~~~g~~G 183 (327)
T 2xbg_A 111 -WSQIPLDPKLPGSPRLIKALGNGSAEMITN-VGA----IYRTKDSGKNWQALVQEAIGVMRNLNRSPSGE-YVAVSSRG 183 (327)
T ss_dssp -CEECCCCTTCSSCEEEEEEEETTEEEEEET-TCC----EEEESSTTSSEEEEECSCCCCEEEEEECTTSC-EEEEETTS
T ss_pred -ceECccccCCCCCeEEEEEECCCCEEEEeC-Ccc----EEEEcCCCCCCEEeecCCCcceEEEEEcCCCc-EEEEECCC
Confidence 11111 1334577888877776666553 331 12334444433222 34556789999999987 46666555
Q ss_pred CeEEEEeC--CCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeecc-CCccccEEEEEEecC
Q 007229 170 FLVNFYEG--PPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSE-DGHHGSIYAVSWSPD 246 (612)
Q Consensus 170 ~~i~~wd~--~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~~~~v~~i~~~~~ 246 (612)
+..+-+|. .+.+.+. ......+..+++.++++.+ .++.+|.+++.+...++....+... ......+..+.+.++
T Consensus 184 ~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~ 260 (327)
T 2xbg_A 184 SFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTP 260 (327)
T ss_dssp SEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSS
T ss_pred cEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEE-EEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCC
Confidence 55555553 4444432 2345678899999998755 5566788777643334444433211 022345889999987
Q ss_pred CCEEEEEeCCCcE
Q 007229 247 GKKVLTVSADKSA 259 (612)
Q Consensus 247 ~~~l~~~~~dg~i 259 (612)
+..++++ .+|.+
T Consensus 261 ~~~~~~g-~~g~i 272 (327)
T 2xbg_A 261 NEVWLAG-GAGAL 272 (327)
T ss_dssp SCEEEEE-STTCE
T ss_pred CEEEEEe-CCCeE
Confidence 7766654 56766
No 273
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.81 E-value=1.7e-06 Score=87.23 Aligned_cols=110 Identities=14% Similarity=0.126 Sum_probs=71.6
Q ss_pred EEEEcC-CCCEEEEEeecCC-----------eEEEEeCCCCeeeec--cc-ccccceEEEEECCCCCeEEEEEc-CCcEE
Q 007229 152 SCEFKP-TRPFRIATCGEDF-----------LVNFYEGPPFKFKLS--HR-EHSNFVNCIRFSPDGSKLISVSS-DRKGL 215 (612)
Q Consensus 152 ~~~~~~-~~~~~l~~~~~d~-----------~i~~wd~~~~~~~~~--~~-~~~~~v~~~~~s~~~~~l~~~~~-dg~i~ 215 (612)
.+++.| +++ +++.|+.+. .+.+||..+++.... +. .+.....++++.++++.++.|+. +..+.
T Consensus 190 ~~av~~~~g~-l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~ 268 (656)
T 1k3i_A 190 AAAIEPTSGR-VLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTS 268 (656)
T ss_dssp EEEEETTTTE-EEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEE
T ss_pred eEEEEecCCE-EEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceE
Confidence 567777 665 677776542 688999888764332 21 12233445778899999998884 56899
Q ss_pred EEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEe-CC-----CcEEEEEe
Q 007229 216 IYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVS-AD-----KSAKVWEI 264 (612)
Q Consensus 216 vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-~d-----g~i~iw~~ 264 (612)
+||..+++....-.. .....-.+++..++++.++.|+ .+ ..+.+||.
T Consensus 269 ~yd~~t~~W~~~~~~--~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~ 321 (656)
T 1k3i_A 269 LYDSSSDSWIPGPDM--QVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSP 321 (656)
T ss_dssp EEEGGGTEEEECCCC--SSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEET
T ss_pred EecCcCCceeECCCC--CccccccceEEecCCeEEEEeCcccCCcccccceEeCC
Confidence 999987765433211 1111223456667899888888 34 46899998
No 274
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.79 E-value=3e-05 Score=69.79 Aligned_cols=237 Identities=10% Similarity=-0.075 Sum_probs=144.8
Q ss_pred EEEEecCCEEEEEeCCCCc-eeeEeccCCCceEEEEECCCCCEE-EEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEE
Q 007229 32 TILYCNGRSVLIRYLDKPL-HVEFYGEHGYPVTVARYSPNGEWI-ASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQ 109 (612)
Q Consensus 32 ~l~~~~~~~i~i~~~~~~~-~~~~~~~h~~~v~~~~~s~d~~~l-as~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~ 109 (612)
+|+++..+.|+..+++... ....+......+.+++|.+.+..| .+-...+.|..++..........+...-.....++
T Consensus 6 ~ll~~~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~gla 85 (318)
T 3sov_A 6 LLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLA 85 (318)
T ss_dssp EEEEECEEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEE
T ss_pred EEEEEccCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEE
Confidence 6778888899999998764 222222233467799999865444 45456788999998876422222333335677899
Q ss_pred ECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEee-cCCeEEEEeCCCCeeeecccc
Q 007229 110 WSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCG-EDFLVNFYEGPPFKFKLSHRE 188 (612)
Q Consensus 110 ~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~~i~~wd~~~~~~~~~~~~ 188 (612)
+.+.+..|..+..... .|.+...+.......+.........+++.|.+.++..+-. ..+.|...++...........
T Consensus 86 vd~~~g~ly~~d~~~~--~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~ 163 (318)
T 3sov_A 86 CDWLGEKLYWTDSETN--RIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINS 163 (318)
T ss_dssp EETTTTEEEEEETTTT--EEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECS
T ss_pred EEcCCCeEEEEECCCC--EEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEEC
Confidence 9987766666554443 3445544433222223344566789999998775555542 357888888764322222222
Q ss_pred cccceEEEEECCCCCeEEEEEc-CCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecC
Q 007229 189 HSNFVNCIRFSPDGSKLISVSS-DRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILED 267 (612)
Q Consensus 189 ~~~~v~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~ 267 (612)
.-.....++++|++..|+.+.. .+.|..+|+... ....+. .........+++.. +..+.+-...+.|..++.
T Consensus 164 ~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~-~~~~~~--~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~--- 236 (318)
T 3sov_A 164 EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGT-NRQAVV--KGSLPHPFALTLFE-DILYWTDWSTHSILACNK--- 236 (318)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEE--CSCCSCEEEEEEET-TEEEEEETTTTEEEEEET---
T ss_pred CCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCC-ceEEEe--cCCCCCceEEEEeC-CEEEEEecCCCeEEEEEC---
Confidence 2345789999998777776654 577999997643 333331 12334566777763 344455445678888887
Q ss_pred CCCCeeEeeee
Q 007229 268 GSGGRVIKTFA 278 (612)
Q Consensus 268 ~~~~~~~~~~~ 278 (612)
.+++....+.
T Consensus 237 -~~G~~~~~i~ 246 (318)
T 3sov_A 237 -YTGEGLREIH 246 (318)
T ss_dssp -TTCCSCEEEE
T ss_pred -CCCCceEEEe
Confidence 5565554443
No 275
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.79 E-value=4.4e-07 Score=91.52 Aligned_cols=70 Identities=17% Similarity=0.175 Sum_probs=47.1
Q ss_pred EEEECC-CCCeEEEEEcCC-----------cEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeC-CCcEEE
Q 007229 195 CIRFSP-DGSKLISVSSDR-----------KGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSA-DKSAKV 261 (612)
Q Consensus 195 ~~~~s~-~~~~l~~~~~dg-----------~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-dg~i~i 261 (612)
.+++.+ +++.++.|+.+. .+.+||+.+++..........+.....++++..+++.++.|+. +..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 556677 888888887643 5889999887754332211123333345677889999998884 457899
Q ss_pred EEe
Q 007229 262 WEI 264 (612)
Q Consensus 262 w~~ 264 (612)
||.
T Consensus 270 yd~ 272 (656)
T 1k3i_A 270 YDS 272 (656)
T ss_dssp EEG
T ss_pred ecC
Confidence 998
No 276
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.79 E-value=1.9e-05 Score=77.64 Aligned_cols=111 Identities=16% Similarity=0.074 Sum_probs=64.9
Q ss_pred CCeEEEEEcCCcEEEEecCCCCeeeeeeccCCcccc------EEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEe
Q 007229 202 GSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGS------IYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIK 275 (612)
Q Consensus 202 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~------v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 275 (612)
+..+++++.++.|.-+|.++|+.+-.+......... -..+++ .+..++.++.++.|.-+|. .+++.+-
T Consensus 68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~----~TG~~~W 141 (582)
T 1flg_A 68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNK----NTGKVVW 141 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEES----SSCCEEE
T ss_pred CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEEC----CCCCEEe
Confidence 345666666455999999999998777432111000 011222 2456777888999999999 8999887
Q ss_pred eeeccCccccceeeeeeeccCC------EEEEEEc------CCEEEEEEcCCCCC
Q 007229 276 TFASSTSNAVEDMLVGCLWQND------HLITVSL------GGIISIFSASNLDK 318 (612)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~------~~~i~~~~~~~~~~ 318 (612)
.+..................+. .++++.. ++.+..+|..+.+.
T Consensus 142 ~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~ 196 (582)
T 1flg_A 142 KKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE 196 (582)
T ss_dssp EEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE
T ss_pred eecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCE
Confidence 7765432110000011111122 5666553 68888888766544
No 277
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.77 E-value=3.7e-06 Score=76.62 Aligned_cols=239 Identities=11% Similarity=0.000 Sum_probs=139.0
Q ss_pred ceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeece-------------------ecccceEEEEee--ccEEEEec
Q 007229 329 NVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEK-------------------KYDARIKCLAAV--EEVIFTAG 387 (612)
Q Consensus 329 ~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~-------------------~~~~~i~~~~~~--~~~l~~~~ 387 (612)
....+++.+ ++.+++++..++.|..|+..++....... .....+..++++ ++.|+.+.
T Consensus 20 ~p~~i~~d~-~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d 98 (322)
T 2fp8_A 20 APNSFTFDS-TNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVD 98 (322)
T ss_dssp CCCCEECCT-TCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEE
T ss_pred CceEEEEcC-CCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEE
Confidence 344555553 26667788888999999887654432211 011246677774 45666665
Q ss_pred CCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEcc-CCCeEE
Q 007229 388 FDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAP-DGSEAI 466 (612)
Q Consensus 388 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~ 466 (612)
..+.+..++..++... .+ .... .. ........+++.+ +|++.+
T Consensus 99 ~~~~i~~~d~~~g~~~---~~--------------------~~~~-------~~------~~~~~p~~i~~d~~~G~l~v 142 (322)
T 2fp8_A 99 CYYHLSVVGSEGGHAT---QL--------------------ATSV-------DG------VPFKWLYAVTVDQRTGIVYF 142 (322)
T ss_dssp TTTEEEEECTTCEECE---EE--------------------ESEE-------TT------EECSCEEEEEECTTTCCEEE
T ss_pred CCCCEEEEeCCCCEEE---Ee--------------------cccC-------CC------CcccccceEEEecCCCEEEE
Confidence 5555666665432211 00 0000 00 0012356788999 887666
Q ss_pred EEec-----------------CCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEE-cCCCeEEEEecCCcce
Q 007229 467 VGGQ-----------------NGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASA-DGNREAIVWDRVSKEV 528 (612)
Q Consensus 467 ~~~~-----------------dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~d~~i~iwd~~~~~~ 528 (612)
+-.. +|.|..||..+++.. .+...-.....++++|++++|..+ ..++.|.+|++.....
T Consensus 143 ~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~---~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~ 219 (322)
T 2fp8_A 143 TDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETT---LLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKK 219 (322)
T ss_dssp EESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEE---EEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTT
T ss_pred ECCcccccccccceehcccCCCceEEEEeCCCCEEE---EeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcC
Confidence 5322 367888888766542 111122345679999999866554 5668999999875321
Q ss_pred -eeecccccccceeEEEecCCCcEEEEeec----------CcEEEEEEccCCCcceeeeeccc----ccCeeeEEEecCc
Q 007229 529 -KLNNMLFHTARINCLAWSPSSTMVATGSI----------DTCVIIYEIGKPASSRITIKNAH----LGGVYGVAFMDDF 593 (612)
Q Consensus 529 -~~~~~~~~~~~i~~~~~s~~~~~l~s~~~----------d~~i~iwd~~~~~~~~~~~~~~h----~~~v~~~~~~~~~ 593 (612)
....+....+ ...+++.++|++.++... .+.|..+|.. + +.+..+... ...++.+++.++.
T Consensus 220 ~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~--G-~~~~~~~~~~g~~~~~~~~~~~~~g~ 295 (322)
T 2fp8_A 220 GTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF--G-NILEVIPLPPPFAGEHFEQIQEHDGL 295 (322)
T ss_dssp TCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT--S-CEEEEEECCTTTTTSCCCEEEEETTE
T ss_pred CccceEEeCCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCC--C-CEEEEEECCCCCccccceEEEEeCCE
Confidence 0011111123 678999999987666544 4567777754 4 555554433 2356777766666
Q ss_pred eEEEccCCCeEEEEEecc
Q 007229 594 NVVSSGEDACIRVWRLAT 611 (612)
Q Consensus 594 ~l~s~~~d~~i~~w~~~~ 611 (612)
.+++...++.|..++++.
T Consensus 296 L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 296 LYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp EEEECSSCSEEEEEEC--
T ss_pred EEEeecCCCceEEEeccc
Confidence 667767788999998764
No 278
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.77 E-value=8.2e-06 Score=77.10 Aligned_cols=241 Identities=9% Similarity=0.047 Sum_probs=136.1
Q ss_pred CceeEEEEcc-CCCEEEEec-CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeC-cC----eEEEeecCCC
Q 007229 19 GRGILISGNP-KTDTILYCN-GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADV-SG----SVRIWGTHNG 91 (612)
Q Consensus 19 ~~v~~~~~s~-d~~~l~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~-d~----~i~iwd~~~~ 91 (612)
.....++++| ++..|.++. ++.|..+|+++++..... ........++|+++|++|..+.. ++ .+.+.+....
T Consensus 137 ~~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~-~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~ 215 (430)
T 3tc9_A 137 GGAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY-SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESG 215 (430)
T ss_dssp SCCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE-CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGT
T ss_pred CCCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCc
Confidence 3667999998 456666665 489999999887655543 35566889999999996666543 11 2333443322
Q ss_pred ceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeec-cCCceEEEEEEcCCCCEEEEEeecCC
Q 007229 92 FVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFD-GHSRRVLSCEFKPTRPFRIATCGEDF 170 (612)
Q Consensus 92 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d~ 170 (612)
......+. .......++++|++..|..+..... .+..+..+.+....... +.......++|+|++++++++-...+
T Consensus 216 ~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~--~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~ 292 (430)
T 3tc9_A 216 FKVITELT-KGQNCNGAETHPINGELYFNSWNAG--QVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQH 292 (430)
T ss_dssp SCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTT--EEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTT
T ss_pred eeeeeeec-cCCCceEEEEeCCCCEEEEEECCCC--EEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCC
Confidence 21112222 2345678899994444544443333 23333333333212111 12245678999999997677777788
Q ss_pred eEEEEeCCC--Cee--eeccccc---------------ccceE-EEEEC--------CCCCeEEEEEcCCcEEEEecCCC
Q 007229 171 LVNFYEGPP--FKF--KLSHREH---------------SNFVN-CIRFS--------PDGSKLISVSSDRKGLIYDGKSG 222 (612)
Q Consensus 171 ~i~~wd~~~--~~~--~~~~~~~---------------~~~v~-~~~~s--------~~~~~l~~~~~dg~i~vwd~~~~ 222 (612)
.|..++... ++. ...+.+. -.... .++.. +++.+.++=...+.|+.++ .+|
T Consensus 293 ~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~-~~G 371 (430)
T 3tc9_A 293 YILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILT-PQG 371 (430)
T ss_dssp EEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEEC-TTS
T ss_pred EEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEEC-CCC
Confidence 999987542 221 1111110 01123 45553 3455444444567888888 455
Q ss_pred Ceeeeeec----cCC----------ccccEEEEEEecC-CCEEEEEeCCCcEEEEEe
Q 007229 223 EKIGEFSS----EDG----------HHGSIYAVSWSPD-GKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 223 ~~~~~~~~----~~~----------~~~~v~~i~~~~~-~~~l~~~~~dg~i~iw~~ 264 (612)
+....... ..+ .-.....++++|+ +.++++-.....|+.+++
T Consensus 372 ~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 428 (430)
T 3tc9_A 372 RVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGY 428 (430)
T ss_dssp EEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred cEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEcc
Confidence 44333311 001 1125789999995 555555445667887776
No 279
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.75 E-value=2.8e-05 Score=70.05 Aligned_cols=112 Identities=13% Similarity=0.164 Sum_probs=66.1
Q ss_pred cceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCc--EEEEEeecCC
Q 007229 191 NFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKS--AKVWEILEDG 268 (612)
Q Consensus 191 ~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~--i~iw~~~~~~ 268 (612)
.....++|+++++++++-..++.|..||... +....+ .....+..+++.++|+++++...... |..++.
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~----~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~---- 102 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHA----TVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVK---- 102 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEE----ECSSEEEEEEECTTSCEEEEEECTTSCEEEEEEC----
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEE----eCCCCceeEEEcCCCcEEEEeccCCcceEEEEcC----
Confidence 4577899999998666655788999999764 444333 22346889999999996655443333 555665
Q ss_pred CCCeeEeeeeccCccccceeeeeeeccCCEEEEEE-cCCEEEEEEcC
Q 007229 269 SGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVS-LGGIISIFSAS 314 (612)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~ 314 (612)
.+++.......... ...... +.+.+..+++.. ..+.|..++..
T Consensus 103 ~~g~~~~~~~~~~~-~~~~g~--~~~~~~~~~v~d~~~g~i~~~d~~ 146 (306)
T 2p4o_A 103 SDGTVETLLTLPDA-IFLNGI--TPLSDTQYLTADSYRGAIWLIDVV 146 (306)
T ss_dssp TTSCEEEEEECTTC-SCEEEE--EESSSSEEEEEETTTTEEEEEETT
T ss_pred CCCeEEEEEeCCCc-cccCcc--cccCCCcEEEEECCCCeEEEEeCC
Confidence 55554332222111 111111 124455555555 47788888754
No 280
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.74 E-value=0.00011 Score=68.75 Aligned_cols=240 Identities=11% Similarity=-0.048 Sum_probs=149.2
Q ss_pred CCEEEEecCCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEe-eCcCeEEEeecCCCc---eeeeeeeecCCCe
Q 007229 30 TDTILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASA-DVSGSVRIWGTHNGF---VLKNEFKVLSGRI 105 (612)
Q Consensus 30 ~~~l~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~-~~d~~i~iwd~~~~~---~~~~~~~~~~~~i 105 (612)
..+|+++..+.|+..+++.......+ ..-..+..++|++.+..|..+ ...+.|..+++.... .............
T Consensus 83 ~~~ll~~~~~~I~~i~l~~~~~~~~~-~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p 161 (400)
T 3p5b_L 83 IAYLFFTNRHEVRKMTLDRSEYTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 161 (400)
T ss_dssp SCEEEEEETTEEEEECTTSCSCEEEE-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCE
T ss_pred cceeEEeccceeEEEccCCcceeEec-cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCc
Confidence 34777777899999999877655544 355678899999866655554 456789999987632 1222223234567
Q ss_pred EEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeec-CCeEEEEeCCCCeeee
Q 007229 106 DDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGE-DFLVNFYEGPPFKFKL 184 (612)
Q Consensus 106 ~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d~~i~~wd~~~~~~~~ 184 (612)
..+++.+.+..|..+..... .|.+...+.......+.........+++.|.+.+++++-.. .+.|...++.......
T Consensus 162 ~glavD~~~~~lY~~d~~~~--~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~ 239 (400)
T 3p5b_L 162 DGLAVDWIHSNIYWTDSVLG--TVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS 239 (400)
T ss_dssp EEEEEETTTTEEEEEETTTT--EEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEE
T ss_pred ccEEEEecCCceEEEECCCC--eEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEE
Confidence 88999987666766655443 34444444333333334445568899999987765665533 4788888876543333
Q ss_pred cccccccceEEEEECCCCCeEEEEEc-CCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEE
Q 007229 185 SHREHSNFVNCIRFSPDGSKLISVSS-DRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWE 263 (612)
Q Consensus 185 ~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~ 263 (612)
.....-.....|++++++..|+.+.. .+.|..+|+..... ..+............+++. .+..+++-...+.|..++
T Consensus 240 ~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~ 317 (400)
T 3p5b_L 240 LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSAN 317 (400)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCC-EEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEE
T ss_pred EEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCcc-EEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEE
Confidence 23333356889999998888877654 57799999764433 3332111223445677774 344555555667888888
Q ss_pred eecCCCCCeeEeeee
Q 007229 264 ILEDGSGGRVIKTFA 278 (612)
Q Consensus 264 ~~~~~~~~~~~~~~~ 278 (612)
. .+++.+..+.
T Consensus 318 ~----~~G~~~~~i~ 328 (400)
T 3p5b_L 318 R----LTGSDVNLLA 328 (400)
T ss_dssp S----SSCCCCEEEE
T ss_pred c----CCCCceEEEe
Confidence 6 5665555544
No 281
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.73 E-value=2.1e-05 Score=72.01 Aligned_cols=204 Identities=8% Similarity=-0.105 Sum_probs=131.2
Q ss_pred ceeEEEEccCCCEEEEec--CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEE-EEeeCcCeEEEeecCCCceeee
Q 007229 20 RGILISGNPKTDTILYCN--GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWI-ASADVSGSVRIWGTHNGFVLKN 96 (612)
Q Consensus 20 ~v~~~~~s~d~~~l~~~~--~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l-as~~~d~~i~iwd~~~~~~~~~ 96 (612)
.+..++|++.++.|.... .+.|..++++.......+.........+++.+.+..| ++-...+.|.+.++.... ...
T Consensus 74 ~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~-~~~ 152 (349)
T 3v64_C 74 NAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH-RKV 152 (349)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEE
T ss_pred ceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCc-eEE
Confidence 568899998888887775 6899999998776555444444556789999855544 555566789999987654 222
Q ss_pred eeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec-CCceeeee-ccCCceEEEEEEcCCCCEEEEEeecCCeEEE
Q 007229 97 EFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD-SGTTVGDF-DGHSRRVLSCEFKPTRPFRIATCGEDFLVNF 174 (612)
Q Consensus 97 ~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~-~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~ 174 (612)
.....-.....+++.|.+..|..+...... +|+..+ .+.....+ .........++++|++..+.++-...+.|..
T Consensus 153 l~~~~l~~P~~iavdp~~g~ly~td~~~~~---~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~ 229 (349)
T 3v64_C 153 LLWQSLEKPRAIALHPMEGTIYWTDWGNTP---RIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIER 229 (349)
T ss_dssp EECTTCSCEEEEEEETTTTEEEEEECSSSC---EEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred EEeCCCCCcceEEEecCcCeEEEeccCCCC---EEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEE
Confidence 233334567899999977777666544311 344444 23333333 2334567899999988766777777789999
Q ss_pred EeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeee
Q 007229 175 YEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEF 228 (612)
Q Consensus 175 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 228 (612)
+|+........+.........+++ .++...++-...+.|..++..+|+....+
T Consensus 230 ~~~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i 282 (349)
T 3v64_C 230 ANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEII 282 (349)
T ss_dssp EETTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred EeCCCCceEEEEeCCCCCceEEEE-ECCEEEEecCCCCeEEEEEccCCCccEEe
Confidence 997754333223333345667777 33434444444677777776666665555
No 282
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.72 E-value=1.4e-05 Score=78.65 Aligned_cols=115 Identities=10% Similarity=0.084 Sum_probs=65.5
Q ss_pred CCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccc----eeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCce
Q 007229 246 DGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVE----DMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPL 321 (612)
Q Consensus 246 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 321 (612)
++ .+++++.++.|.-+|. .+++.+-.+......... .........++.+++++.++.+..+|..+.+....
T Consensus 68 ~g-~vyv~~~~~~v~AlD~----~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~dg~l~AlD~~TG~~~W~ 142 (582)
T 1flg_A 68 DG-VIYVTASYSRLFALDA----KTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTLDASVVALNKNTGKVVWK 142 (582)
T ss_dssp TT-EEEEEETTTEEEEEES----SSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEETTTEEEEEESSSCCEEEE
T ss_pred CC-EEEEEcCCCCEEEEEC----CCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeCCCEEEEEECCCCCEEee
Confidence 44 4555555444888888 888888777654322111 00012233578899999999999999877665433
Q ss_pred eecCc-cc--cee-EEEEEe--cCCc-EEEEEec------CCcEEEEEcCCceeeee
Q 007229 322 SFSGH-VK--NVS-TLTALK--ISQQ-TILSSSY------DGAIIKWIRGVGYSSKL 365 (612)
Q Consensus 322 ~~~~~-~~--~v~-~~~~~~--~~~~-~l~~~~~------dg~i~~wd~~~~~~~~~ 365 (612)
.-... .. .+. ...... .+++ .++.++. +|.|..+|..+++..-.
T Consensus 143 ~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~ 199 (582)
T 1flg_A 143 KKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWM 199 (582)
T ss_dssp EECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEE
T ss_pred ecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEee
Confidence 22111 10 111 111222 0112 5666543 78899999988876553
No 283
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.72 E-value=1.4e-05 Score=74.43 Aligned_cols=205 Identities=8% Similarity=-0.106 Sum_probs=133.3
Q ss_pred CceeEEEEccCCCEEEEec--CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEE-EEeeCcCeEEEeecCCCceee
Q 007229 19 GRGILISGNPKTDTILYCN--GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWI-ASADVSGSVRIWGTHNGFVLK 95 (612)
Q Consensus 19 ~~v~~~~~s~d~~~l~~~~--~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l-as~~~d~~i~iwd~~~~~~~~ 95 (612)
..+..++|++.++.|.... .+.|..++++.......+.........+++.+.+..| ++-...+.|.+.++.... ..
T Consensus 116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~-~~ 194 (386)
T 3v65_B 116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH-RK 194 (386)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCS-CE
T ss_pred CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCc-eE
Confidence 3577899998887777775 6899999998776555444444456789999855544 455566789999887654 22
Q ss_pred eeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec-CCceeeee-ccCCceEEEEEEcCCCCEEEEEeecCCeEE
Q 007229 96 NEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD-SGTTVGDF-DGHSRRVLSCEFKPTRPFRIATCGEDFLVN 173 (612)
Q Consensus 96 ~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~-~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~ 173 (612)
..+...-.....+++.|++..|..+...... +|+..+ .+.....+ .........++|+|++..+.++-...+.|.
T Consensus 195 ~l~~~~l~~P~giavdp~~g~ly~td~~~~~---~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~ 271 (386)
T 3v65_B 195 VLLWQSLEKPRAIALHPMEGTIYWTDWGNTP---RIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIE 271 (386)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEECSSSC---EEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEE
T ss_pred EeecCCCCCCcEEEEEcCCCeEEEeccCCCC---EEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEE
Confidence 2333333567899999988777766544311 344444 23322222 333456789999988876677777788999
Q ss_pred EEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeee
Q 007229 174 FYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEF 228 (612)
Q Consensus 174 ~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 228 (612)
.+|+........+.........|++ ..+..+++-...+.|..++..+|+....+
T Consensus 272 ~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i 325 (386)
T 3v65_B 272 RANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEII 325 (386)
T ss_dssp EECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred EEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEE
Confidence 9998654333233333445677777 34444444445677888886677766665
No 284
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.70 E-value=1.9e-06 Score=72.75 Aligned_cols=183 Identities=7% Similarity=-0.017 Sum_probs=120.9
Q ss_pred ceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEE--EEECCCCCeEEEE-EcCCcEEEEecCCCCe
Q 007229 148 RRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNC--IRFSPDGSKLISV-SSDRKGLIYDGKSGEK 224 (612)
Q Consensus 148 ~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~--~~~s~~~~~l~~~-~~dg~i~vwd~~~~~~ 224 (612)
.....+.|+. ..+..+.+.+|.|+.+|+++++.+..+ -...... +++ +++.|+.. -.++.+.+||.++.+.
T Consensus 55 ~ftqGL~~~~--~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~~~FgeGit~--~g~~Ly~ltw~~~~v~V~D~~Tl~~ 128 (268)
T 3nok_A 55 AFTQGLVFHQ--GHFFESTGHQGTLRQLSLESAQPVWME--RLGNIFAEGLAS--DGERLYQLTWTEGLLFTWSGMPPQR 128 (268)
T ss_dssp CCEEEEEEET--TEEEEEETTTTEEEECCSSCSSCSEEE--ECTTCCEEEEEE--CSSCEEEEESSSCEEEEEETTTTEE
T ss_pred cccceEEEEC--CEEEEEcCCCCEEEEEECCCCcEEeEE--CCCCcceeEEEE--eCCEEEEEEccCCEEEEEECCcCcE
Confidence 3457788874 347888888999999999999988776 2233333 454 44455544 4588999999999999
Q ss_pred eeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEE-
Q 007229 225 IGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVS- 303 (612)
Q Consensus 225 ~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 303 (612)
+.++... ..-..++ +|++.|+.+..++.|.++|. .+.+.+..+........-.....+.+.++.+++..
T Consensus 129 ~~ti~~~----~eGwGLt--~Dg~~L~vSdGs~~l~~iDp----~T~~v~~~I~V~~~g~~v~~lNeLe~~dG~lyanvw 198 (268)
T 3nok_A 129 ERTTRYS----GEGWGLC--YWNGKLVRSDGGTMLTFHEP----DGFALVGAVQVKLRGQPVELINELECANGVIYANIW 198 (268)
T ss_dssp EEEEECS----SCCCCEE--EETTEEEEECSSSEEEEECT----TTCCEEEEEECEETTEECCCEEEEEEETTEEEEEET
T ss_pred EEEEeCC----CceeEEe--cCCCEEEEECCCCEEEEEcC----CCCeEEEEEEeCCCCcccccccccEEeCCEEEEEEC
Confidence 9999532 2223343 56788888777889999999 88888888876542222222233444456676666
Q ss_pred cCCEEEEEEcCCCCCCceeec-------------CcccceeEEEEEecCCcEEEEEe
Q 007229 304 LGGIISIFSASNLDKAPLSFS-------------GHVKNVSTLTALKISQQTILSSS 347 (612)
Q Consensus 304 ~~~~i~~~~~~~~~~~~~~~~-------------~~~~~v~~~~~~~~~~~~l~~~~ 347 (612)
.++.|.+.|..+... ...+. ....-.+.|++.+..+.++++|-
T Consensus 199 ~s~~I~vIDp~TG~V-~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 199 HSSDVLEIDPATGTV-VGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp TCSEEEEECTTTCBE-EEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred CCCeEEEEeCCCCcE-EEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 477888888655432 22111 12235688999865567777664
No 285
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.69 E-value=1.9e-05 Score=67.35 Aligned_cols=201 Identities=11% Similarity=0.073 Sum_probs=121.7
Q ss_pred eccCCCceEEEEECCCCCEE-EEeeCcCeEEEeecCCCceeeeeee-ecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEE
Q 007229 55 YGEHGYPVTVARYSPNGEWI-ASADVSGSVRIWGTHNGFVLKNEFK-VLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAF 132 (612)
Q Consensus 55 ~~~h~~~v~~~~~s~d~~~l-as~~~d~~i~iwd~~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~ 132 (612)
+.+-...+..++|+|+++.| |+...++.|...|.. ++ +...+. .-......+++.+++.++++ .+... .+.++
T Consensus 22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~-v~~~i~l~g~~D~EGIa~~~~g~~~vs-~E~~~--~l~~~ 96 (255)
T 3qqz_A 22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GD-LIRTIPLDFVKDLETIEYIGDNQFVIS-DERDY--AIYVI 96 (255)
T ss_dssp CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CC-EEEEEECSSCSSEEEEEECSTTEEEEE-ETTTT--EEEEE
T ss_pred CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CC-EEEEEecCCCCChHHeEEeCCCEEEEE-ECCCC--cEEEE
Confidence 45666789999999986655 456778889999998 65 333332 22357889999999976555 33332 34455
Q ss_pred EecCCce---eeeec------cCCceEEEEEEcCCCCEEEEEeecCC--eEEEEeC-CCCeeeecc-------cccccce
Q 007229 133 MWDSGTT---VGDFD------GHSRRVLSCEFKPTRPFRIATCGEDF--LVNFYEG-PPFKFKLSH-------REHSNFV 193 (612)
Q Consensus 133 ~~~~~~~---~~~~~------~~~~~v~~~~~~~~~~~~l~~~~~d~--~i~~wd~-~~~~~~~~~-------~~~~~~v 193 (612)
..+.... +.... ........++++|+++. |.++.+.. .|..|+- .....+..+ ..+...+
T Consensus 97 ~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~-L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~ 175 (255)
T 3qqz_A 97 SLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHT-FWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDV 175 (255)
T ss_dssp EECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTE-EEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCC
T ss_pred EcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCE-EEEEECcCCceEEEEcccccCCceeeecchhhccccccCCc
Confidence 5543221 12221 23445689999999985 44454443 4444541 111111111 1123457
Q ss_pred EEEEECCCCCeEE-EEEcCCcEEEEecCCCCeeeeeeccCCc------cccEEEEEEecCCCEEEEEeCCCcEEEEE
Q 007229 194 NCIRFSPDGSKLI-SVSSDRKGLIYDGKSGEKIGEFSSEDGH------HGSIYAVSWSPDGKKVLTVSADKSAKVWE 263 (612)
Q Consensus 194 ~~~~~s~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~~------~~~v~~i~~~~~~~~l~~~~~dg~i~iw~ 263 (612)
.++++.|....|+ .....+.+.++|.+ |+.+..+....+. -.....|+|.++|+ |+..++.+.+..+.
T Consensus 176 S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE~n~~y~f~ 250 (255)
T 3qqz_A 176 SGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSEPNRFYRFT 250 (255)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEETTTEEEEEE
T ss_pred eeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcCCceEEEEE
Confidence 8999999765554 44556778889954 6666666443222 13678999999998 44456766555554
No 286
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.64 E-value=4.3e-05 Score=72.13 Aligned_cols=239 Identities=8% Similarity=-0.002 Sum_probs=139.8
Q ss_pred CceeEEEEccC--CCEEEEec-CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCc---C-eEEEeecCCC
Q 007229 19 GRGILISGNPK--TDTILYCN-GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVS---G-SVRIWGTHNG 91 (612)
Q Consensus 19 ~~v~~~~~s~d--~~~l~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d---~-~i~iwd~~~~ 91 (612)
.....++++|+ +..|.++. .+.|+.+|+++++.... .+.......++++++|+++++-... . .+...+...+
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~-~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIK-TTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASG 217 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEE-CCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGT
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEe-ecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCC
Confidence 35779999995 45566655 48999999988776654 4455668999999999955554311 1 2333333332
Q ss_pred ceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec--CCceeeeec--cCCceEEEEEEcCCCCEEEEEee
Q 007229 92 FVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD--SGTTVGDFD--GHSRRVLSCEFKPTRPFRIATCG 167 (612)
Q Consensus 92 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~--~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~ 167 (612)
......+ ..-.....+++.|++..|..+..... +|+.++ ++.....+. +....-..++|+|+++++.++-.
T Consensus 218 ~~~~~~~-~~~~~P~giavd~~~G~lyv~d~~~~----~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~ 292 (433)
T 4hw6_A 218 FTERLSL-CNARGAKTCAVHPQNGKIYYTRYHHA----MISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYN 292 (433)
T ss_dssp TCCEEEE-EECSSBCCCEECTTTCCEEECBTTCS----EEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEET
T ss_pred eeccccc-cccCCCCEEEEeCCCCeEEEEECCCC----EEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeC
Confidence 2111122 23445677899994444544443332 355555 454422221 11222346999999997677777
Q ss_pred cCCeEEEEeCC--CCeee--ecccc---------------cccceEEEEE---------CCCCCeEEEEEcCCcEEEEec
Q 007229 168 EDFLVNFYEGP--PFKFK--LSHRE---------------HSNFVNCIRF---------SPDGSKLISVSSDRKGLIYDG 219 (612)
Q Consensus 168 ~d~~i~~wd~~--~~~~~--~~~~~---------------~~~~v~~~~~---------s~~~~~l~~~~~dg~i~vwd~ 219 (612)
..+.|+.++.. ++... ..+.+ .-.....+++ .+++++.++-...+.|+.++.
T Consensus 293 ~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~ 372 (433)
T 4hw6_A 293 GKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP 372 (433)
T ss_dssp TTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT
T ss_pred CCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC
Confidence 78899998754 33211 11111 1123677899 677766665555678999984
Q ss_pred CCCCeeeeeeccC----C----------ccccEEEEEEe-cCCCEEEEEeCCCcEEEEEe
Q 007229 220 KSGEKIGEFSSED----G----------HHGSIYAVSWS-PDGKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 220 ~~~~~~~~~~~~~----~----------~~~~v~~i~~~-~~~~~l~~~~~dg~i~iw~~ 264 (612)
+|.......... + .-.....|+++ +++.++++-...+.|+.+++
T Consensus 373 -~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 431 (433)
T 4hw6_A 373 -EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAP 431 (433)
T ss_dssp -TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred -CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEec
Confidence 554332221100 0 11347789999 56665555555677887776
No 287
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.61 E-value=9.6e-05 Score=67.09 Aligned_cols=230 Identities=11% Similarity=0.050 Sum_probs=135.1
Q ss_pred CCceeEEEEccCCCEEEEecCCEEEEEeCCCCceeeEec---cCCCceEEEEECCCCCEEEEeeCcCeE-EEeecCCCce
Q 007229 18 RGRGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYG---EHGYPVTVARYSPNGEWIASADVSGSV-RIWGTHNGFV 93 (612)
Q Consensus 18 ~~~v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~~~---~h~~~v~~~~~s~d~~~las~~~d~~i-~iwd~~~~~~ 93 (612)
...+.+++|+| ++.++++..+.|+. ..+.|+.-..+. .+...+..+.+.++++.++.+. +|.| +-+| .++.
T Consensus 79 ~~~~~~i~~~~-~~~~~~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~g~v~~S~D--gG~t 153 (327)
T 2xbg_A 79 DYRFNSVSFQG-NEGWIVGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMITN-VGAIYRTKD--SGKN 153 (327)
T ss_dssp CCEEEEEEEET-TEEEEEEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEET-TCCEEEESS--TTSS
T ss_pred CccEEEEEecC-CeEEEEECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEeC-CccEEEEcC--CCCC
Confidence 34688899987 55556655665543 445555433332 2445678888888888777764 5543 2222 2332
Q ss_pred eeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEE-ecC-Cceeeee-ccCCceEEEEEEcCCCCEEEEEeecCC
Q 007229 94 LKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFM-WDS-GTTVGDF-DGHSRRVLSCEFKPTRPFRIATCGEDF 170 (612)
Q Consensus 94 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~-~~~-~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~d~ 170 (612)
-..........+..+++.|++++++++.... ++. .+. ++.-..+ ......+..+++.+++. +...+.+|
T Consensus 154 W~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~------~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~--~~~~~~~G 225 (327)
T 2xbg_A 154 WQALVQEAIGVMRNLNRSPSGEYVAVSSRGS------FYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGR--LWMIVNGG 225 (327)
T ss_dssp EEEEECSCCCCEEEEEECTTSCEEEEETTSS------EEEEECTTCSSCEEEECCSSSCEEEEEECTTSC--EEEEETTT
T ss_pred CEEeecCCCcceEEEEEcCCCcEEEEECCCc------EEEEeCCCCCceeECCCCCCCccceeEECCCCC--EEEEeCCc
Confidence 2222334456789999999998877664433 222 332 2222221 23456788999999986 44555678
Q ss_pred eEEEEeCCCCeeeeccc----ccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecC
Q 007229 171 LVNFYEGPPFKFKLSHR----EHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPD 246 (612)
Q Consensus 171 ~i~~wd~~~~~~~~~~~----~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 246 (612)
.+++.+...++.-..+. .+...+.++++.+++..+++ +.++.+ .+....|+.-..+.........+..+.|.++
T Consensus 226 ~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~-g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~ 303 (327)
T 2xbg_A 226 KIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLA-GGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSP 303 (327)
T ss_dssp EEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEE-ESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEET
T ss_pred eEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEE-eCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECC
Confidence 88777433233222221 12345889999988776555 457766 4555556655544211123456788888866
Q ss_pred CCEEEEEeCCCcEEEEE
Q 007229 247 GKKVLTVSADKSAKVWE 263 (612)
Q Consensus 247 ~~~l~~~~~dg~i~iw~ 263 (612)
++ +++++.+|.|.-++
T Consensus 304 ~~-~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 304 DQ-GFILGQKGILLRYV 319 (327)
T ss_dssp TE-EEEECSTTEEEEEC
T ss_pred Cc-eEEEcCCceEEEEc
Confidence 55 66667888765554
No 288
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.61 E-value=8.2e-05 Score=67.14 Aligned_cols=205 Identities=7% Similarity=-0.069 Sum_probs=127.7
Q ss_pred CceeEEEEccCCCEEEEec--CCEEEEEeCCC----CceeeEeccCCCceEEEEECCCCC-EEEEeeCcCeEEEeecCCC
Q 007229 19 GRGILISGNPKTDTILYCN--GRSVLIRYLDK----PLHVEFYGEHGYPVTVARYSPNGE-WIASADVSGSVRIWGTHNG 91 (612)
Q Consensus 19 ~~v~~~~~s~d~~~l~~~~--~~~i~i~~~~~----~~~~~~~~~h~~~v~~~~~s~d~~-~las~~~d~~i~iwd~~~~ 91 (612)
..+.+++|+++++.|..+. ++.|..+++++ ......+...-.....+++.+.+. +.++-...+.|.+.+....
T Consensus 30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~ 109 (316)
T 1ijq_A 30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 109 (316)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCC
Confidence 3577999999888777776 58999999886 232333333334568999997554 4455556789999998765
Q ss_pred ceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec-CCceeeee-ccCCceEEEEEEcCCCCEEEEEeecC
Q 007229 92 FVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD-SGTTVGDF-DGHSRRVLSCEFKPTRPFRIATCGED 169 (612)
Q Consensus 92 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~-~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~d 169 (612)
. ..............+++.|++.+|..+...... +|+..+ .|+....+ ...-.....++++|++..+.++-...
T Consensus 110 ~-~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~---~I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~ 185 (316)
T 1ijq_A 110 K-RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPA---KIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKL 185 (316)
T ss_dssp S-EEEEEECTTCCEEEEEEETTTTEEEEEECSSSC---EEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred c-eEEEEECCCCCcceEEeCCCCCEEEEEccCCCC---eEEEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEECCC
Confidence 4 332333344578899999977777666543211 344444 34433333 23345678999999888666777777
Q ss_pred CeEEEEeCCCCeeeeccc--ccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeee
Q 007229 170 FLVNFYEGPPFKFKLSHR--EHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEF 228 (612)
Q Consensus 170 ~~i~~wd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 228 (612)
+.|..+|+.......... ........+++. .+...++-...+.|..++..+++....+
T Consensus 186 ~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i 245 (316)
T 1ijq_A 186 HSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLL 245 (316)
T ss_dssp TEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred CeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEE
Confidence 899999987432221111 122345677774 3444444445677888887777665555
No 289
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.61 E-value=3.3e-05 Score=64.81 Aligned_cols=164 Identities=13% Similarity=0.088 Sum_probs=114.8
Q ss_pred CeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCce-EEEEEEcCCCCEEEEEeecCCeEEEEeCCCCee
Q 007229 104 RIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRR-VLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKF 182 (612)
Q Consensus 104 ~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~ 182 (612)
....+.|++ +..+.+.+..+ .+.++..+.++++.+....-.... -..+++. ++.+.+..-.++.+.+||..+++.
T Consensus 22 ftqGL~~~~-~~LyestG~~g-~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~~ 97 (243)
T 3mbr_X 22 FTEGLFYLR-GHLYESTGETG-RSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLATLTP 97 (243)
T ss_dssp CEEEEEEET-TEEEEEECCTT-SCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTTEE
T ss_pred ccccEEEEC-CEEEEECCCCC-CceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECCcCcE
Confidence 467899986 55555555543 336888889999998887643322 1334444 444566667789999999999999
Q ss_pred eecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCcc---ccEEEEEEecCCCEEEEEeCCCcE
Q 007229 183 KLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHH---GSIYAVSWSPDGKKVLTVSADKSA 259 (612)
Q Consensus 183 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~---~~v~~i~~~~~~~~l~~~~~dg~i 259 (612)
+.++.....+ .. ++++++.|+.+..++.|.++|.++.+.+..+.... +. ..+..+.+. +|+..+..-.+..|
T Consensus 98 ~~ti~~~~~G-wg--lt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~-~g~~~~~lNeLe~~-~G~lyanvw~s~~I 172 (243)
T 3mbr_X 98 RARFRYPGEG-WA--LTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTA-GGRPLDNLNELEWV-NGELLANVWLTSRI 172 (243)
T ss_dssp EEEEECSSCC-CE--EEECSSCEEEECSSSEEEEECTTTCCEEEEEECEE-TTEECCCEEEEEEE-TTEEEEEETTTTEE
T ss_pred EEEEeCCCCc-eE--EeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEcc-CCcccccceeeEEe-CCEEEEEECCCCeE
Confidence 9887643322 33 34677778777778999999999999988885421 11 345566666 67655555467799
Q ss_pred EEEEeecCCCCCeeEeeeecc
Q 007229 260 KVWEILEDGSGGRVIKTFASS 280 (612)
Q Consensus 260 ~iw~~~~~~~~~~~~~~~~~~ 280 (612)
.+.|. .+++.+..+...
T Consensus 173 ~vIDp----~tG~V~~~idl~ 189 (243)
T 3mbr_X 173 ARIDP----ASGKVVAWIDLQ 189 (243)
T ss_dssp EEECT----TTCBEEEEEECG
T ss_pred EEEEC----CCCCEEEEEECC
Confidence 99999 899998888755
No 290
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.60 E-value=0.00015 Score=67.78 Aligned_cols=208 Identities=7% Similarity=-0.090 Sum_probs=131.8
Q ss_pred CCceeEEEEccCCCEEEEec--CCEEEEEeCCC----CceeeEeccCCCceEEEEECCC-CCEEEEeeCcCeEEEeecCC
Q 007229 18 RGRGILISGNPKTDTILYCN--GRSVLIRYLDK----PLHVEFYGEHGYPVTVARYSPN-GEWIASADVSGSVRIWGTHN 90 (612)
Q Consensus 18 ~~~v~~~~~s~d~~~l~~~~--~~~i~i~~~~~----~~~~~~~~~h~~~v~~~~~s~d-~~~las~~~d~~i~iwd~~~ 90 (612)
...+.+++|++.++.|.... .+.|..++++. ......+...-.....+++.+. +++.++-...+.|.+.++..
T Consensus 111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g 190 (400)
T 3p5b_L 111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 190 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTT
T ss_pred cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCC
Confidence 34778999999888887775 68899999876 2334444445567889999985 44445555678899999887
Q ss_pred CceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCC
Q 007229 91 GFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDF 170 (612)
Q Consensus 91 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~ 170 (612)
.. ....+.........+++.|.+.+|..+...... .|.....+...........-.....|+++|++..+.++-...+
T Consensus 191 ~~-~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~-~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~ 268 (400)
T 3p5b_L 191 VK-RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPA-KIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLH 268 (400)
T ss_dssp CS-EEEEEECSSCCEEEEEEETTTTEEEEEECSSSC-CEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred Cc-eEEEEeCCCCCcceEEEecccCeEEEEeCCCCC-EEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCC
Confidence 65 333333344568899999977777665533211 2344444422222222334467889999998886666666778
Q ss_pred eEEEEeCCCCeeeecccc--cccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeee
Q 007229 171 LVNFYEGPPFKFKLSHRE--HSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEF 228 (612)
Q Consensus 171 ~i~~wd~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 228 (612)
.|..+|+........... .......+++. .+..+.+-...+.|..+|..+|+.+..+
T Consensus 269 ~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i 327 (400)
T 3p5b_L 269 SISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLL 327 (400)
T ss_dssp EEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEE
T ss_pred EEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEE
Confidence 999999865433222221 22345567763 3334444455678888887778776666
No 291
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=98.57 E-value=0.0011 Score=68.26 Aligned_cols=518 Identities=10% Similarity=-0.013 Sum_probs=260.5
Q ss_pred CCceeEEEEccCCCEEEEecCCEEEEEeCCCCceeeEe-ccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeee
Q 007229 18 RGRGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFY-GEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKN 96 (612)
Q Consensus 18 ~~~v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~~-~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~ 96 (612)
...|.++.-..+|..-+ +...-+..||-.+-+..... ......|.++....+|. |-.|+.+| +..||..+.+. ..
T Consensus 21 ~n~V~~I~qD~~G~lWi-gT~~GL~ryDG~~~~~~~~~~~~~~~~i~~i~~d~~g~-lWigT~~G-l~~yd~~~~~f-~~ 96 (758)
T 3ott_A 21 ASVVSCFLQDSEGLIWI-GSNKGLFSYDGYSTQQHFTYGENNNTRIYCGVIIDNTY-LYMGTDNG-ILVYNYRADRY-EQ 96 (758)
T ss_dssp CCCEEEEEECTTSCEEE-EESSCEEEECSSCEEECSCTTSTTSSCEEEEEEETTTE-EEEEETTE-EEEEETTTTEE-CC
T ss_pred cceEEEEEECCCCCEEE-EECCCccccCCCceEEEEccCCCCCceEEEEEEcCCCc-EEEEeCCC-eEEEeCCCCEE-EC
Confidence 45789999999986544 44444666763321111100 11245689988888775 44444555 78899887642 11
Q ss_pred eeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec--CCceeeeec-----cCCceEEEEEEcCCCCEEEEEeecC
Q 007229 97 EFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD--SGTTVGDFD-----GHSRRVLSCEFKPTRPFRIATCGED 169 (612)
Q Consensus 97 ~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~--~~~~~~~~~-----~~~~~v~~~~~~~~~~~~l~~~~~d 169 (612)
........|.++.. .+| .|..++.++ ++.++ +++ +..+. .....|.++...+++. +..++.+
T Consensus 97 ~~~~~~~~i~~i~~-~~g-~lWigt~~G------l~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~--lWigt~~ 165 (758)
T 3ott_A 97 PETDFPTDVRTMAL-QGD-TLWLGALNG------LYTYQLQSRK-LTSFDTRRNGLPNNTIYSIIRTKDNQ--IYVGTYN 165 (758)
T ss_dssp CSCCCCSCEEEEEE-ETT-EEEEEETTE------EEEEETTTCC-EEEECHHHHCCSCSCEEEEEECTTCC--EEEEETT
T ss_pred cccCCCceEEEEEe-cCC-cEEEEcCCc------ceeEeCCCCe-EEEeccCCCCcCCCeEEEEEEcCCCC--EEEEeCC
Confidence 11112235666654 355 444455443 44444 333 22221 1234688888888887 4445544
Q ss_pred CeEEEEeCCCCeeeec-ccc----cccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEe
Q 007229 170 FLVNFYEGPPFKFKLS-HRE----HSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWS 244 (612)
Q Consensus 170 ~~i~~wd~~~~~~~~~-~~~----~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~ 244 (612)
| +..++..+++.... ... ....|.++...+++..|..|+. +-+..+|..+++... +.. .....|.++...
T Consensus 166 G-l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~-~~~--l~~~~i~~i~~d 240 (758)
T 3ott_A 166 G-LCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQ-TEA--FHNNSIKSLALD 240 (758)
T ss_dssp E-EEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEE-EEE--EEEEEEEEEEEC
T ss_pred C-HhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEe-ccC--CCCCeEEEEEEc
Confidence 4 77888777654321 111 1234888888777776665664 458889987665432 211 123458888888
Q ss_pred cCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeec
Q 007229 245 PDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFS 324 (612)
Q Consensus 245 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 324 (612)
++|.+.+ ++.+ -+.+++. .+.+. ..+...... ...
T Consensus 241 ~~g~lWi-gT~~-Gl~~~~~----~~~~~-~~~~~~~~~------------------------------------~~~-- 275 (758)
T 3ott_A 241 GNGDLLA-GTDN-GLYVYHN----DTTPL-QHIIHDSRN------------------------------------IQS-- 275 (758)
T ss_dssp TTCCEEE-EETT-EEEEECC----TTSCC-EEECCCTTC------------------------------------TTS--
T ss_pred CCCCEEE-EeCC-ceeEEec----CCCcE-EEEEcCCCC------------------------------------cCc--
Confidence 7777544 4444 5777776 33322 111111000 000
Q ss_pred CcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeec-----eecccceEEEEe-eccEEEEecCCCeEEEEecC
Q 007229 325 GHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLE-----KKYDARIKCLAA-VEEVIFTAGFDNKVWRVPLC 398 (612)
Q Consensus 325 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~-----~~~~~~i~~~~~-~~~~l~~~~~~~~i~~~~~~ 398 (612)
-....|.++.... ...+-.|+..| +.++........... ......|.++.. ..+.+..++.+ -+..++..
T Consensus 276 l~~~~i~~i~~D~--~g~lWiGT~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiGt~~-Gl~~~~~~ 351 (758)
T 3ott_A 276 LTNNIIWNIFADQ--EHNIWLGTDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWFGGAN-GLIRFTDP 351 (758)
T ss_dssp CSCSCEEEEEECT--TCCEEEEESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEEETT-EEEEESCT
T ss_pred CCcCeEEEEEEcC--CCCEEEEeCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEEeeCC-cceeeccc
Confidence 0122344443332 23344444445 433322111110000 002345777777 44566677655 45556554
Q ss_pred CCCCCccceeccC------CCcceeeecCCCCcEEEEEeeccEEEeecc-cceeeec--------ccceEEEEEEccCCC
Q 007229 399 EGECGDAEHIDVG------SQPLDLSLALSSPELALVSTESGVILLDSL-KVMSKID--------LGFTVTACAIAPDGS 463 (612)
Q Consensus 399 ~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--------~~~~i~~~~~s~~~~ 463 (612)
++........... ....-.++..+....+-++..+++..++.. .....+. ....|.++...++++
T Consensus 352 ~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~ 431 (758)
T 3ott_A 352 AGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWIATDGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQ 431 (758)
T ss_dssp TSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEEEETTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSE
T ss_pred ccccceeEEeccCCcCCCCCCCceEEEEECCCCCEEEEeCCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCC
Confidence 4321111111110 011122333333333444446788888732 2222221 123477888777776
Q ss_pred eEEEEecCCeEEEEEccCc------ccccceeec---c-ccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecc
Q 007229 464 EAIVGGQNGKLHIYSISGN------TLTEEMVLE---K-HRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNM 533 (612)
Q Consensus 464 ~l~~~~~dg~v~i~d~~~~------~~~~~~~~~---~-~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 533 (612)
+ -+|+..+-+.++|..+. .......+. + ....|.++...++|.+.+.++..+-+..+|..+++......
T Consensus 432 l-WigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~ 510 (758)
T 3ott_A 432 L-WISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVTKLFA 510 (758)
T ss_dssp E-EEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEEEECT
T ss_pred E-EEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEEecC
Confidence 4 44666566888886531 110000111 1 12358999999999877643344558888988776542111
Q ss_pred cc--cccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeecc-cccCeeeEEEecCceEEEccCCCeEEEEEec
Q 007229 534 LF--HTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNA-HLGGVYGVAFMDDFNVVSSGEDACIRVWRLA 610 (612)
Q Consensus 534 ~~--~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~l~s~~~d~~i~~w~~~ 610 (612)
.. ....+.++....+|.+.+. +..| +..++..+....... ..+ ....|.++... ...|..++..| |..++.+
T Consensus 511 ~~~~~~~~~~~i~~d~~g~lWig-t~~G-l~~~~~~~~~~~~~~-~~gl~~~~i~~i~~~-~g~lWi~t~~G-l~~~~~~ 585 (758)
T 3ott_A 511 DELTGEKSPNYLLCDEDGLLWVG-FHGG-VMRINPKDESQQSIS-FGSFSNNEILSMTCV-KNSIWVSTTNG-LWIIDRK 585 (758)
T ss_dssp TTSCGGGCEEEEEECTTSCEEEE-ETTE-EEEECC--CCCCBCC-CCC---CCEEEEEEE-TTEEEEEESSC-EEEEETT
T ss_pred CCcCCCcccceEEECCCCCEEEE-ecCc-eEEEecCCCceEEec-ccCCCccceEEEEEC-CCCEEEECCCC-eEEEcCC
Confidence 11 1345788888888876654 4455 888887662211111 111 12456776554 44555555565 5555544
No 292
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.52 E-value=0.00022 Score=67.31 Aligned_cols=240 Identities=9% Similarity=0.034 Sum_probs=141.6
Q ss_pred ceeEEEEcc-CCCEEEEec--CCEEEEEeCCCCceeeEeccC---CCceEEEEE-------CCCCCEEEEeeCcC-----
Q 007229 20 RGILISGNP-KTDTILYCN--GRSVLIRYLDKPLHVEFYGEH---GYPVTVARY-------SPNGEWIASADVSG----- 81 (612)
Q Consensus 20 ~v~~~~~s~-d~~~l~~~~--~~~i~i~~~~~~~~~~~~~~h---~~~v~~~~~-------s~d~~~las~~~d~----- 81 (612)
....|+|+| ++..|.++. .+.|++.|++++.....+... -.....++| +++|++|..+...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 567899999 455565555 368999999987776654432 235889999 99999666665443
Q ss_pred --eEEEeecCC-Cceee----eeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec-------CCce--------
Q 007229 82 --SVRIWGTHN-GFVLK----NEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD-------SGTT-------- 139 (612)
Q Consensus 82 --~i~iwd~~~-~~~~~----~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~-------~~~~-------- 139 (612)
.|.+.+... +.... ..+.. -.....++++|++..|.++...... +..++.+ ++..
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~--V~r~d~~~~~~~~~tg~~~tp~~~~~ 296 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQ--VFRLDLVDYFKTIKNGGSWDPIVKNN 296 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTE--EEEECHHHHHHHHHTTCCCCCBGGGC
T ss_pred CceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCE--EEEEecccccccccCceeeccccccc
Confidence 266665443 22110 22222 2345678899977777766655542 4444444 3332
Q ss_pred ---eeee-c-cCCceEEEEEEcCCCCEEEEEeecCCeEEEEe--CCCCeee--ecccc------cc---------cceE-
Q 007229 140 ---VGDF-D-GHSRRVLSCEFKPTRPFRIATCGEDFLVNFYE--GPPFKFK--LSHRE------HS---------NFVN- 194 (612)
Q Consensus 140 ---~~~~-~-~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd--~~~~~~~--~~~~~------~~---------~~v~- 194 (612)
...+ . +.......++|+|+++++.++-...+.|+.++ ...+... ..+.+ .. ....
T Consensus 297 ~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~ 376 (496)
T 3kya_A 297 PNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQ 376 (496)
T ss_dssp TTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEE
T ss_pred ccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeE
Confidence 1111 1 22345679999999996566667788999855 3433221 11111 10 1234
Q ss_pred EEEEC-------CCCCeEEEEEcCCcEEEEecCCCCeeeeeeccC-----------C----------ccccEEEEEEecC
Q 007229 195 CIRFS-------PDGSKLISVSSDRKGLIYDGKSGEKIGEFSSED-----------G----------HHGSIYAVSWSPD 246 (612)
Q Consensus 195 ~~~~s-------~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-----------~----------~~~~v~~i~~~~~ 246 (612)
.++.. +++.+.++=...+.|+.++ .+|.. .++.-.. + .-.....|+++++
T Consensus 377 gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~v-~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~ 454 (496)
T 3kya_A 377 GVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGIV-STYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDV 454 (496)
T ss_dssp EEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCBE-EEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETT
T ss_pred EEEEccccccccCCCeEEEEECCCCEEEEEe-CCCCE-EEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECC
Confidence 44443 4565555555678899998 45643 3331100 1 1134778999996
Q ss_pred -CCEEEEEeCCCcEEEEEe
Q 007229 247 -GKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 247 -~~~l~~~~~dg~i~iw~~ 264 (612)
+.++++=.....|+.+++
T Consensus 455 ~g~lyVaD~~N~rIrki~~ 473 (496)
T 3kya_A 455 KEMFYVHDQVGHTIRTISM 473 (496)
T ss_dssp TTEEEEEETTTTEEEEEEE
T ss_pred CCEEEEEeCCCCEEEEEEC
Confidence 665555555678888888
No 293
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.50 E-value=0.00051 Score=69.74 Aligned_cols=237 Identities=11% Similarity=-0.049 Sum_probs=144.6
Q ss_pred CEEEEecCCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEE-EeeCcCeEEEeecCCCce---eeeeeeecCCCeE
Q 007229 31 DTILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIA-SADVSGSVRIWGTHNGFV---LKNEFKVLSGRID 106 (612)
Q Consensus 31 ~~l~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~la-s~~~d~~i~iwd~~~~~~---~~~~~~~~~~~i~ 106 (612)
.+|+++....|+..++........+. ....+..++|.+....|. +-...+.|+.+++..... ....+........
T Consensus 396 p~Ll~an~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~ 474 (791)
T 3m0c_C 396 AYLFFTNRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 474 (791)
T ss_dssp CEEEEECBSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred cccccccccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcc
Confidence 46777777888888888766555444 456778999999555444 545667899999875321 2222332345677
Q ss_pred EEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecC-CeEEEEeCCCCeeeec
Q 007229 107 DLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGED-FLVNFYEGPPFKFKLS 185 (612)
Q Consensus 107 ~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-~~i~~wd~~~~~~~~~ 185 (612)
.|++.+.++.|..+..... .|.+...+.......+.........|++.|.+.+++++-... +.|...++........
T Consensus 475 GLAvD~~~~~LY~tD~~~~--~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~l 552 (791)
T 3m0c_C 475 GLAVDWIHSNIYWTDSVLG--TVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL 552 (791)
T ss_dssp EEEEETTTTEEEEEETTTT--EEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEE
T ss_pred eeeeeecCCcEEEEecCCC--eEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEE
Confidence 8999998887777765544 355555553333333334556689999999877656665333 7888888875544333
Q ss_pred ccccccceEEEEECCCCCeEEEEEc-CCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEE-eCCCcEEEEE
Q 007229 186 HREHSNFVNCIRFSPDGSKLISVSS-DRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTV-SADKSAKVWE 263 (612)
Q Consensus 186 ~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~~dg~i~iw~ 263 (612)
+...-.....|++.+.+..|+.+.. .+.|...++........+. ....-....+|++.. .+|+.+ ...+.|...+
T Consensus 553 v~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~-~~~~l~~P~glav~~--~~lYwtD~~~~~I~~~d 629 (791)
T 3m0c_C 553 VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILE-DEKRLAHPFSLAVFE--DKVFWTDIINEAIFSAN 629 (791)
T ss_dssp ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEE-CTTTTSSEEEEEEET--TEEEEEETTTTEEEEEE
T ss_pred EeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEec-CCCccCCCCEEEEeC--CEEEEEECCCCEEEEEe
Confidence 3334457889999988777777654 4678888875443333331 112223445677643 344444 3456677776
Q ss_pred eecCCCCCeeEeee
Q 007229 264 ILEDGSGGRVIKTF 277 (612)
Q Consensus 264 ~~~~~~~~~~~~~~ 277 (612)
. .+++.+..+
T Consensus 630 k----~tG~~~~~l 639 (791)
T 3m0c_C 630 R----LTGSDVNLL 639 (791)
T ss_dssp T----TTCCCCEEE
T ss_pred C----CCCcceEEe
Confidence 5 455444443
No 294
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.49 E-value=0.00017 Score=68.15 Aligned_cols=60 Identities=10% Similarity=0.213 Sum_probs=44.1
Q ss_pred ceEEEEECC-CCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeC
Q 007229 192 FVNCIRFSP-DGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSA 255 (612)
Q Consensus 192 ~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~ 255 (612)
....|+++| ++..|+++...+.|+.+|+..+...... ........++|++++++|+++..
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~----~~~~~P~~ia~d~~G~~lyvad~ 198 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY----SGLSKVRTICWTHEADSMIITND 198 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE----CCCSCEEEEEECTTSSEEEEEEC
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe----cCCCCcceEEEeCCCCEEEEEeC
Confidence 467889998 4666777766688999998776554444 34456889999999996666654
No 295
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.48 E-value=0.00021 Score=64.23 Aligned_cols=204 Identities=7% Similarity=-0.099 Sum_probs=128.8
Q ss_pred ceeEEEEccCCCEEEEec--CCEEEEEeCCCCcee-eEeccCCCceEEEEECCCC-CEEEEeeCcCeEEEeecCCCceee
Q 007229 20 RGILISGNPKTDTILYCN--GRSVLIRYLDKPLHV-EFYGEHGYPVTVARYSPNG-EWIASADVSGSVRIWGTHNGFVLK 95 (612)
Q Consensus 20 ~v~~~~~s~d~~~l~~~~--~~~i~i~~~~~~~~~-~~~~~h~~~v~~~~~s~d~-~~las~~~d~~i~iwd~~~~~~~~ 95 (612)
...+++|++.++.|..+. ++.|..++++.+... ..+...-.....+++.+.+ ++.++-...+.|.+.++.... ..
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~-~~ 114 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL-RK 114 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS-CE
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCc-EE
Confidence 567899999877777775 689999998876432 2233333456789999754 444555567889999987654 22
Q ss_pred eeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec-CCceeeee-ccCCceEEEEEEcCCCCEEEEEeecCCeEE
Q 007229 96 NEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD-SGTTVGDF-DGHSRRVLSCEFKPTRPFRIATCGEDFLVN 173 (612)
Q Consensus 96 ~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~-~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~ 173 (612)
............+++.|.+.+|..+...... +|+..+ .|+....+ ...-.....++++|++..+.++-...+.|.
T Consensus 115 ~l~~~~~~~P~giavdp~~g~ly~td~~~~~---~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~ 191 (318)
T 3sov_A 115 VLFWQELDQPRAIALDPSSGFMYWTDWGEVP---KIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIH 191 (318)
T ss_dssp EEECSSCSSEEEEEEEGGGTEEEEEECSSSC---EEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred EEEeCCCCCccEEEEeCCCCEEEEEecCCCC---EEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEE
Confidence 2233344567899999987777666533111 344444 23333222 233456789999998776667777788999
Q ss_pred EEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeee
Q 007229 174 FYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEF 228 (612)
Q Consensus 174 ~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 228 (612)
.+|+..........+.......+++.. +..+.+-...+.|..++..+|+....+
T Consensus 192 ~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~~~~i 245 (318)
T 3sov_A 192 KSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEGLREI 245 (318)
T ss_dssp EEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred EEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCceEEE
Confidence 999864333222232334566777753 334444445677888888777766555
No 296
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=98.43 E-value=0.00073 Score=61.82 Aligned_cols=228 Identities=14% Similarity=0.048 Sum_probs=125.5
Q ss_pred ceeEEEEccCCCEEEEecCCEEEEEeCCCCc-eeeEe---ccCCCceEEEEECCC---CCEEEEe-eC---c----CeEE
Q 007229 20 RGILISGNPKTDTILYCNGRSVLIRYLDKPL-HVEFY---GEHGYPVTVARYSPN---GEWIASA-DV---S----GSVR 84 (612)
Q Consensus 20 ~v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~-~~~~~---~~h~~~v~~~~~s~d---~~~las~-~~---d----~~i~ 84 (612)
....++|.|||+++++-.++.|.+++. +++ .+..+ .........|+|+|+ +..|..+ +. + ..|.
T Consensus 30 ~P~~ia~~pdG~l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~ 108 (354)
T 3a9g_A 30 VPWSIAPLGGGRYLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVI 108 (354)
T ss_dssp CEEEEEEEETTEEEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEE
T ss_pred CCeEEEEcCCCeEEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEE
Confidence 567999999999777766899999873 444 22111 122456889999998 4444433 32 3 5788
Q ss_pred EeecCCCc------e-eeeeeee-cCCCeEEEEECCCCCEEEEEeCCCCe--------eeEEEEEec-CCce--------
Q 007229 85 IWGTHNGF------V-LKNEFKV-LSGRIDDLQWSPDGLRIVACGDGKGK--------SFVRAFMWD-SGTT-------- 139 (612)
Q Consensus 85 iwd~~~~~------~-~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~~~~~--------~~i~i~~~~-~~~~-------- 139 (612)
.|+..... . +...+.. .......++|.|||..+++.++.... ..-+|+.++ .++.
T Consensus 109 r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~ 188 (354)
T 3a9g_A 109 RGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPN 188 (354)
T ss_dssp EEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTT
T ss_pred EEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCC
Confidence 88876541 1 1111221 11234679999999877776543210 011355554 2220
Q ss_pred eeee-ccCCceEEEEEEcC-CCCEEEEEeec-CC--eEEEEeCCCCe------------------eeecccccccceEEE
Q 007229 140 VGDF-DGHSRRVLSCEFKP-TRPFRIATCGE-DF--LVNFYEGPPFK------------------FKLSHREHSNFVNCI 196 (612)
Q Consensus 140 ~~~~-~~~~~~v~~~~~~~-~~~~~l~~~~~-d~--~i~~wd~~~~~------------------~~~~~~~~~~~v~~~ 196 (612)
...+ .++ .....++|+| ++. ++++-.. +. .|.+.. .+. ....+.........+
T Consensus 189 ~~i~a~G~-rnp~Gla~d~~~g~-l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~ 264 (354)
T 3a9g_A 189 SPIWSYGH-RNPQGIDWHRASGV-MVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGA 264 (354)
T ss_dssp CCEEEECC-SCCCEEEECTTTCC-EEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEE
T ss_pred CcEEEEcc-CCcceEEEeCCCCC-EEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcce
Confidence 1111 122 2345789999 565 3444322 22 233322 111 111221122457788
Q ss_pred EEC-------CCCCeEEEEEcCCcEEEEecCCC-Cee--eeeeccCCccccEEEEEEecCCCEEEEEe
Q 007229 197 RFS-------PDGSKLISVSSDRKGLIYDGKSG-EKI--GEFSSEDGHHGSIYAVSWSPDGKKVLTVS 254 (612)
Q Consensus 197 ~~s-------~~~~~l~~~~~dg~i~vwd~~~~-~~~--~~~~~~~~~~~~v~~i~~~~~~~~l~~~~ 254 (612)
+|. .+|+++++.-..+.|...+++.. +.. ..+ .......+..+++.|||.+.++..
T Consensus 265 ~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~--~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 265 SFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTF--FKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp EECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEE--CTTTSCCEEEEEECTTSCEEEEEC
T ss_pred EEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeee--ccCCCCCeeEEEECCCCcEEEEEe
Confidence 884 46766665555677888887753 222 122 112345789999999997666553
No 297
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=98.42 E-value=0.0002 Score=65.67 Aligned_cols=225 Identities=11% Similarity=0.023 Sum_probs=122.1
Q ss_pred ceeEEEEccCCCEEEEecCCEEEEEeCCCCceeeE--e---ccCCCceEEEEECCC---CCEEEEeeC-c-----CeEEE
Q 007229 20 RGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEF--Y---GEHGYPVTVARYSPN---GEWIASADV-S-----GSVRI 85 (612)
Q Consensus 20 ~v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~--~---~~h~~~v~~~~~s~d---~~~las~~~-d-----~~i~i 85 (612)
....++|.|||+++++-..+.|.+++ +++.... + .........++|+|| +.+|..+.. . +.|..
T Consensus 32 ~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r 109 (352)
T 2ism_A 32 VPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVR 109 (352)
T ss_dssp CEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEE
T ss_pred CceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEE
Confidence 56799999999977766689999998 3432211 1 122456889999998 555544432 2 67888
Q ss_pred eecCCCce-----eeeeeee---cCCCeEEEEECCCCCEEEEEeCCCCe--------eeEEEEEec-CCc----------
Q 007229 86 WGTHNGFV-----LKNEFKV---LSGRIDDLQWSPDGLRIVACGDGKGK--------SFVRAFMWD-SGT---------- 138 (612)
Q Consensus 86 wd~~~~~~-----~~~~~~~---~~~~i~~~~~s~~~~~l~~~~~~~~~--------~~i~i~~~~-~~~---------- 138 (612)
++...... +...+.. .......++|.|||...++.++.... ..-+|+.++ .++
T Consensus 110 ~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~ 189 (352)
T 2ism_A 110 LRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGR 189 (352)
T ss_dssp EEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTC
T ss_pred EEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCC
Confidence 88775421 1111221 11134689999999777765543210 012355554 221
Q ss_pred ---eeeeeccCCceEEEEEEcC-CCCEEEEEeecCCe--------EEEEeCCCCe------------------eeecccc
Q 007229 139 ---TVGDFDGHSRRVLSCEFKP-TRPFRIATCGEDFL--------VNFYEGPPFK------------------FKLSHRE 188 (612)
Q Consensus 139 ---~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~d~~--------i~~wd~~~~~------------------~~~~~~~ 188 (612)
....+..--.....++|+| ++. +.++-..... |.+. ..+. ....+ .
T Consensus 190 ~~~~~~i~a~G~rnp~g~a~d~~~g~-l~v~d~g~~~~~~~~~dei~~i--~~G~nyGwp~~~g~~~~~~~~~p~~~~-~ 265 (352)
T 2ism_A 190 RGARPEVYSLGHRNPQGLAWHPKTGE-LFSSEHGPSGEQGYGHDEVNLI--VPGGNYGWPRVVGRGNDPRYRDPLYFW-P 265 (352)
T ss_dssp TTSCTTEEEECCSEECCCEECTTTCC-EEEEEECC------CCCEEEEE--CTTCBCCTTTCCSCCCCTTSCCCSEEC-T
T ss_pred CCCCccEEEEcCCCcccEEEECCCCC-EEEEEcCCCCCCCCCCeEEEEe--ccCCcCCCCcccCCCCCCCCcCCeEec-C
Confidence 1111111113466789999 565 3444332222 3332 2221 11122 1
Q ss_pred cccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCe------eeeeeccCCccccEEEEEEecCCCEEEEEe
Q 007229 189 HSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEK------IGEFSSEDGHHGSIYAVSWSPDGKKVLTVS 254 (612)
Q Consensus 189 ~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~------~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~ 254 (612)
+......++| .+|+++++....+.|...+++.... ...+. .....+..+++.|||.+.++..
T Consensus 266 ~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~---~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 266 QGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETAL---SGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp TCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEE---ESSCCEEEEEECTTSCEEEEEC
T ss_pred CCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheec---ccCCCeeEEEECCCCcEEEEEe
Confidence 2234567777 4666555555566777777664431 11221 1235788999999997666653
No 298
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.33 E-value=0.001 Score=62.83 Aligned_cols=199 Identities=11% Similarity=0.080 Sum_probs=113.3
Q ss_pred ceEEEEECCC--CCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec-CC
Q 007229 61 PVTVARYSPN--GEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD-SG 137 (612)
Q Consensus 61 ~v~~~~~s~d--~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~-~~ 137 (612)
....++|+|+ +..|..+...+.|+.+|..++. +. .+.........++|+++|+ |..+...+....-.+.... .+
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~-v~-~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~ 216 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQY-VD-IKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRAS 216 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTE-EE-EECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGG
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCE-EE-EeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCC
Confidence 4568999995 3445555444899999998775 32 3333455689999999999 4444332100001122222 11
Q ss_pred cee--eeeccCCceEEEEEEcC-CCCEEEEEeecCCeEEEEeCCCCeeeecc-c-ccccceEEEEECCCCCeEEEEEc-C
Q 007229 138 TTV--GDFDGHSRRVLSCEFKP-TRPFRIATCGEDFLVNFYEGPPFKFKLSH-R-EHSNFVNCIRFSPDGSKLISVSS-D 211 (612)
Q Consensus 138 ~~~--~~~~~~~~~v~~~~~~~-~~~~~l~~~~~d~~i~~wd~~~~~~~~~~-~-~~~~~v~~~~~s~~~~~l~~~~~-d 211 (612)
... ..+. .......++++| ++. +.++-..++.|+.+|..++.....+ . +....-..++|+|++++|+.+.. .
T Consensus 217 ~~~~~~~~~-~~~~P~giavd~~~G~-lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~ 294 (433)
T 4hw6_A 217 GFTERLSLC-NARGAKTCAVHPQNGK-IYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGK 294 (433)
T ss_dssp TTCCEEEEE-ECSSBCCCEECTTTCC-EEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTT
T ss_pred Ceecccccc-ccCCCCEEEEeCCCCe-EEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCC
Confidence 111 1111 223446688999 555 5666667889999998877652222 1 11223346999999996665554 6
Q ss_pred CcEEEEecC--CCCee--eeeecc---CC---------ccccEEEEEE---------ecCCCEEEEEeCCCcEEEEEe
Q 007229 212 RKGLIYDGK--SGEKI--GEFSSE---DG---------HHGSIYAVSW---------SPDGKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 212 g~i~vwd~~--~~~~~--~~~~~~---~~---------~~~~v~~i~~---------~~~~~~l~~~~~dg~i~iw~~ 264 (612)
+.|+.++.. ++... ..+... .+ .-.....+++ .+++++.++-...+.|+.++.
T Consensus 295 ~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~ 372 (433)
T 4hw6_A 295 HCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP 372 (433)
T ss_dssp TEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT
T ss_pred CEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC
Confidence 788887765 23211 111100 00 1123667888 566665555555567777763
No 299
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.29 E-value=0.00049 Score=61.03 Aligned_cols=200 Identities=12% Similarity=0.216 Sum_probs=126.4
Q ss_pred CCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECC----CCCE--EEEEeCCC--CeeeEEEEEec-CCcee
Q 007229 70 NGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSP----DGLR--IVACGDGK--GKSFVRAFMWD-SGTTV 140 (612)
Q Consensus 70 d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~----~~~~--l~~~~~~~--~~~~i~i~~~~-~~~~~ 140 (612)
...+++.....+-+.+||+ +++.+ +.+.. +.++.+..-| .|+. |+.+++.. .. .+.++..+ ....+
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l-~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n-~l~vf~iDp~~~~l 113 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKML-HSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKN-TIEIYAIDGKNGTL 113 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEE-EEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCC-EEEEEEECTTTCCE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEE-EEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCC-eEEEEEECCCCCce
Confidence 3455666667788999999 66633 33432 5666666655 2333 55555543 22 67888776 23335
Q ss_pred eeecc------CC-ceEEEEEE--cCC-CCEEEEEeecCCeEEEEeCC-------CCeeeecccccccceEEEEECCCCC
Q 007229 141 GDFDG------HS-RRVLSCEF--KPT-RPFRIATCGEDFLVNFYEGP-------PFKFKLSHREHSNFVNCIRFSPDGS 203 (612)
Q Consensus 141 ~~~~~------~~-~~v~~~~~--~~~-~~~~l~~~~~d~~i~~wd~~-------~~~~~~~~~~~~~~v~~~~~s~~~~ 203 (612)
..+.. .. ..+..+++ +|. +.+.++....+|.+..|++. +.+.+.++.- ...+..+...+...
T Consensus 114 ~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g 192 (355)
T 3amr_A 114 QSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYG 192 (355)
T ss_dssp EECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTT
T ss_pred eeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCC
Confidence 54422 11 55666777 774 44457777788999999872 3345555543 35688889998888
Q ss_pred eEEEEEcCCcEEEEecC-----CCCeeeeeeccCCccccEEEEEEe--cCCC-EEEEEe-CCCcEEEEEeecCCC-CCee
Q 007229 204 KLISVSSDRKGLIYDGK-----SGEKIGEFSSEDGHHGSIYAVSWS--PDGK-KVLTVS-ADKSAKVWEILEDGS-GGRV 273 (612)
Q Consensus 204 ~l~~~~~dg~i~vwd~~-----~~~~~~~~~~~~~~~~~v~~i~~~--~~~~-~l~~~~-~dg~i~iw~~~~~~~-~~~~ 273 (612)
.|+.+-++..|..++.+ +++.+..+. .......+..|++. ++++ +|++.+ .+.++.+||. . +.+.
T Consensus 193 ~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~-~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr----~~~~~~ 267 (355)
T 3amr_A 193 RLYIAEEDEAIWKFSAEPDGGSNGTVIDRAD-GRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDR----QGKNKY 267 (355)
T ss_dssp EEEEEETTTEEEEEECSTTSCSCCEEEEEBS-SSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEES----STTCCE
T ss_pred eEEEecccceEEEEeCCcCCCCCceEEEEec-CCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEEC----CCCCcE
Confidence 99999998777777754 334444441 11233478888884 4555 666665 5679999998 4 5667
Q ss_pred Eeeeecc
Q 007229 274 IKTFASS 280 (612)
Q Consensus 274 ~~~~~~~ 280 (612)
+..|...
T Consensus 268 vg~f~Ig 274 (355)
T 3amr_A 268 VADFRIT 274 (355)
T ss_dssp EEEEEEC
T ss_pred EEEEEec
Confidence 7776543
No 300
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=98.28 E-value=0.0016 Score=56.53 Aligned_cols=269 Identities=12% Similarity=0.092 Sum_probs=162.7
Q ss_pred CcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeee
Q 007229 212 RKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVG 291 (612)
Q Consensus 212 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (612)
.++.|.|+.++........ ..+ +.-.+|..+.++.-. ...++++|+ ++...++.+.... .+.-
T Consensus 49 ~~VvIiDl~n~~~~~Rrpi--~Ad----sAIMnP~~~ViALra-g~~LQiFnl----etK~klks~~~~e------~Vvf 111 (365)
T 2xzh_A 49 AQVVIIDMNDPSNPIRRPI--SAD----SAIMNPASKVIALKA-GKTLQIFNI----EMKSKMKAHTMTD------DVTF 111 (365)
T ss_dssp EEEEEEETTSTTSCEEEEC--CCS----EEEECSSSSEEEEEE-TTEEEEEET----TTTEEEEEEECSS------CEEE
T ss_pred CEEEEEECCCCCCcccccc--ccc----eeeeCCCccEEEEec-CCeEEEech----HHhhhhcceecCC------ccEE
Confidence 4688889988766533311 222 334588888776654 678999999 9999999988764 5555
Q ss_pred eeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCccc--ceeEEEEE-ecCCcEEEEEe-------cCCcEEEEEcCCce
Q 007229 292 CLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVK--NVSTLTAL-KISQQTILSSS-------YDGAIIKWIRGVGY 361 (612)
Q Consensus 292 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~v~~~~~~-~~~~~~l~~~~-------~dg~i~~wd~~~~~ 361 (612)
-.|-....+.--.+..++-|++.....+...+..|.. ...-+.+. +.+.++++..+ -.|.+.+|..+.+.
T Consensus 112 WkWis~~~L~lVT~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~ 191 (365)
T 2xzh_A 112 WKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV 191 (365)
T ss_dssp EEECSSSEEEEEESSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE
T ss_pred EEecCCCeEEEEcCCcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccc
Confidence 6666777777777889999999876677666665543 23333343 44466665433 23778899988877
Q ss_pred eeeeceecccceEEEEeecc----EEEE-ec---CCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeec
Q 007229 362 SSKLEKKYDARIKCLAAVEE----VIFT-AG---FDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTES 433 (612)
Q Consensus 362 ~~~~~~~~~~~i~~~~~~~~----~l~~-~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (612)
...+.. |......+..+++ .+++ +. ..+++++.++...... ..........+.+.|+.
T Consensus 192 sQ~ieG-haa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~---~~~f~kk~vdi~fppea---------- 257 (365)
T 2xzh_A 192 SQPIEG-HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTG---NQPFPKKAVDVFFPPEA---------- 257 (365)
T ss_dssp EEEECC-SEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTT---CCCCCCEEEEECCCTTC----------
T ss_pred cceeee-eeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCC---CCCcccccceeeCCccc----------
Confidence 666554 5444444443221 1222 21 1258888887543111 01111222223333321
Q ss_pred cEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEc
Q 007229 434 GVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASAD 513 (612)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 513 (612)
...-..++.+|+....+..-+.-|.+++||++++.+.....+ ..++|-.-+...+..=++...
T Consensus 258 ---------------~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~nrI--S~d~iF~ta~~~~~~Gi~~Vn 320 (365)
T 2xzh_A 258 ---------------QNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRI--SGETIFVTAPHEATAGIIGVN 320 (365)
T ss_dssp ---------------TTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEEC--CSSCEEEEEEEGGGTEEEEEE
T ss_pred ---------------cCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEecc--CCCceEEecccCCCCcEEEEc
Confidence 123456788999889999999999999999999987333333 334454444433333344444
Q ss_pred CCCeEEEEecCCcce
Q 007229 514 GNREAIVWDRVSKEV 528 (612)
Q Consensus 514 ~d~~i~iwd~~~~~~ 528 (612)
..|.|.--.++....
T Consensus 321 r~GqVl~v~v~~~~i 335 (365)
T 2xzh_A 321 RKGQVLSVCVEEENI 335 (365)
T ss_dssp TTCEEEEEEECTTTH
T ss_pred CCCEEEEEEECcccE
Confidence 666666665555443
No 301
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.27 E-value=0.0012 Score=67.12 Aligned_cols=206 Identities=8% Similarity=-0.077 Sum_probs=128.1
Q ss_pred CceeEEEEccCCCEEEEec--CCEEEEEeCCCC----ceeeEeccCCCceEEEEECCCCCEEE-EeeCcCeEEEeecCCC
Q 007229 19 GRGILISGNPKTDTILYCN--GRSVLIRYLDKP----LHVEFYGEHGYPVTVARYSPNGEWIA-SADVSGSVRIWGTHNG 91 (612)
Q Consensus 19 ~~v~~~~~s~d~~~l~~~~--~~~i~i~~~~~~----~~~~~~~~h~~~v~~~~~s~d~~~la-s~~~d~~i~iwd~~~~ 91 (612)
..+.+++|++.+..|.... .+.|+.+++... .....+...-.....|++.+.++.|. +-...+.|.+.++...
T Consensus 424 ~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~ 503 (791)
T 3m0c_C 424 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 503 (791)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred CceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCC
Confidence 4677899999777777665 578988888753 33344444556678899998775555 4456789999999866
Q ss_pred ceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCe
Q 007229 92 FVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFL 171 (612)
Q Consensus 92 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~ 171 (612)
. ....+...-.....|++.|.+.+|..+...... .|.....+.......+.........|++.+.+..+.++-...+.
T Consensus 504 ~-~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~-~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~ 581 (791)
T 3m0c_C 504 K-RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPA-KIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS 581 (791)
T ss_dssp S-EEEEEECTTCCEEEEEEETTTTEEEEEECSSSC-EEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred e-EEEEEeCCCCCcceEEEecCCCCEEEecCCCCC-eEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCc
Confidence 5 333333444568999999987777666543211 34444444333333333344678999999887766666666788
Q ss_pred EEEEeCCCCeeeecccc--cccceEEEEECCCCCeEEEEE-cCCcEEEEecCCCCeeeee
Q 007229 172 VNFYEGPPFKFKLSHRE--HSNFVNCIRFSPDGSKLISVS-SDRKGLIYDGKSGEKIGEF 228 (612)
Q Consensus 172 i~~wd~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~ 228 (612)
|...++........+.. .-....+|++. +.+|+.+. ..+.|...|..+|+.+..+
T Consensus 582 I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~tG~~~~~l 639 (791)
T 3m0c_C 582 ISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLL 639 (791)
T ss_dssp EEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred EEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCCCcceEEe
Confidence 99999865443333322 12234566653 33555444 3566777776666655554
No 302
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=98.24 E-value=0.0016 Score=59.57 Aligned_cols=241 Identities=11% Similarity=0.052 Sum_probs=127.0
Q ss_pred ceeEEEEccCCC-EEEEecCCEEEEEeCCCCceeeE-------eccCCCceEEEEECCC---CCEEEEe-eC-------c
Q 007229 20 RGILISGNPKTD-TILYCNGRSVLIRYLDKPLHVEF-------YGEHGYPVTVARYSPN---GEWIASA-DV-------S 80 (612)
Q Consensus 20 ~v~~~~~s~d~~-~l~~~~~~~i~i~~~~~~~~~~~-------~~~h~~~v~~~~~s~d---~~~las~-~~-------d 80 (612)
....|+|.|||+ ++++-..+.|++++.+ +..... ..........++|+|| +.+|..+ +. .
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 567999999999 6666668899999854 322111 1122446789999996 4444433 22 2
Q ss_pred CeEEEeecCCCc----eeeeeeeec------CCCeEEEEECCCCCEEEEEeCCCC--------eeeEEEEEec-CCc---
Q 007229 81 GSVRIWGTHNGF----VLKNEFKVL------SGRIDDLQWSPDGLRIVACGDGKG--------KSFVRAFMWD-SGT--- 138 (612)
Q Consensus 81 ~~i~iwd~~~~~----~~~~~~~~~------~~~i~~~~~s~~~~~l~~~~~~~~--------~~~i~i~~~~-~~~--- 138 (612)
..|..|++.... .....+... ...-..++|.|||.+.++.++... ...-+|+.++ .++
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~ 177 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPD 177 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCT
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCC
Confidence 357667765431 111111111 112457999999977676655321 0001344444 222
Q ss_pred ----------eeeeeccCCceEEEEEEcC-CCCEEEEEe-ecCCeEEEEeCCCCee------------------------
Q 007229 139 ----------TVGDFDGHSRRVLSCEFKP-TRPFRIATC-GEDFLVNFYEGPPFKF------------------------ 182 (612)
Q Consensus 139 ----------~~~~~~~~~~~v~~~~~~~-~~~~~l~~~-~~d~~i~~wd~~~~~~------------------------ 182 (612)
....+..--.....++|.| ++. +.++- +.++.=.|.-+..+..
T Consensus 178 ~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~-l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~~ 256 (353)
T 2g8s_A 178 DNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNA-LWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGEI 256 (353)
T ss_dssp TCTTTTSTTSCTTEEEECCSEEEEEEEETTTTE-EEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBSS
T ss_pred CCCCcCCCCCCccEEEEcCcCccceEEECCCCC-EEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCCC
Confidence 1111211224577899999 554 33332 2222122222221111
Q ss_pred -------eecccccccceEEEEECC-------CCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCC
Q 007229 183 -------KLSHREHSNFVNCIRFSP-------DGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGK 248 (612)
Q Consensus 183 -------~~~~~~~~~~v~~~~~s~-------~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~ 248 (612)
...+ .+...+..++|.. +|+++++....+.|...+++.++..............+..+++.|||.
T Consensus 257 ~~~~~~P~~~~-~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~ 335 (353)
T 2g8s_A 257 VAGTEQPVFYW-KDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGY 335 (353)
T ss_dssp CTTSCCCSEEE-SSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSC
T ss_pred CCCccCCeEEe-CCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCc
Confidence 0011 1223567778853 466666655677888888776544332211112235789999999998
Q ss_pred EEEEEeCCCcEEEEEe
Q 007229 249 KVLTVSADKSAKVWEI 264 (612)
Q Consensus 249 ~l~~~~~dg~i~iw~~ 264 (612)
+.++.. +..=+||.+
T Consensus 336 lyv~td-~~~g~I~ri 350 (353)
T 2g8s_A 336 LYVLTD-ESSGELLKV 350 (353)
T ss_dssp EEEEEC-STTEEEEEE
T ss_pred EEEEEe-CCCCEEEEE
Confidence 655433 223355655
No 303
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.23 E-value=1.2e-05 Score=81.09 Aligned_cols=239 Identities=12% Similarity=-0.047 Sum_probs=135.6
Q ss_pred EEEEecCCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEee-CcCeEEEeecCCC---ceeeeeeeecCCCeEE
Q 007229 32 TILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASAD-VSGSVRIWGTHNG---FVLKNEFKVLSGRIDD 107 (612)
Q Consensus 32 ~l~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~-~d~~i~iwd~~~~---~~~~~~~~~~~~~i~~ 107 (612)
+|+++..+.|+..++.+.+....+. ....+..++|.+++..|..+. ..+.|..+++.+. ......+.........
T Consensus 379 ~ll~~~~~~I~~id~~~~~~~~~~~-~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~g 457 (699)
T 1n7d_A 379 YLFFTNRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG 457 (699)
T ss_dssp CBCCCCTTC-CEECTTSCCEECCSC-CCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCC
T ss_pred eEEecCccceEEEeCCCCcceeeec-cCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcce
Confidence 4555566788888888776555443 334567899999776666554 5578999998751 1111122112234567
Q ss_pred EEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecC-CeEEEEeCCCCeeeecc
Q 007229 108 LQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGED-FLVNFYEGPPFKFKLSH 186 (612)
Q Consensus 108 ~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-~~i~~wd~~~~~~~~~~ 186 (612)
+++.+.+..|+.+..... .|.+...+.......+.........+++.|.+.+++++-... +.|...++........+
T Consensus 458 lavD~~~g~LY~tD~~~~--~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~ 535 (699)
T 1n7d_A 458 LAVDWIHSNIYWTDSVLG--TVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV 535 (699)
T ss_dssp EECCCSSSBCEECCTTTS--CEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEES
T ss_pred EEEEeeCCcEEEEeccCC--eEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEE
Confidence 888876666655543332 244444443332222333334567889999776555554333 67877776533222112
Q ss_pred cccccceEEEEECCCCCeEEEEE-cCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEee
Q 007229 187 REHSNFVNCIRFSPDGSKLISVS-SDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEIL 265 (612)
Q Consensus 187 ~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~ 265 (612)
...-.....|+|+|++..|+.+. ..+.|..+++.... ...+............|++..+ .++++....+.|..++.
T Consensus 536 ~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~-~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~- 612 (699)
T 1n7d_A 536 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANR- 612 (699)
T ss_dssp CSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSC-CEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEET-
T ss_pred eCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCc-eEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEc-
Confidence 22234567899999877666655 45679999986433 3333111111233445666543 44444455678999887
Q ss_pred cCCCCCeeEeeeec
Q 007229 266 EDGSGGRVIKTFAS 279 (612)
Q Consensus 266 ~~~~~~~~~~~~~~ 279 (612)
.+++.+..+..
T Consensus 613 ---~~G~~~~~i~~ 623 (699)
T 1n7d_A 613 ---LTGSDVNLLAE 623 (699)
T ss_dssp ---TTEEEEECCCT
T ss_pred ---cCCCceEEeec
Confidence 67777666543
No 304
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.23 E-value=0.0015 Score=58.04 Aligned_cols=199 Identities=15% Similarity=0.194 Sum_probs=121.6
Q ss_pred EEEEccC---CCEEEEe-cCCEEEEEeCCCCceeeEeccCCCceEEEEECCC----CC---EEEEee-C--cCeEEEeec
Q 007229 23 LISGNPK---TDTILYC-NGRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPN----GE---WIASAD-V--SGSVRIWGT 88 (612)
Q Consensus 23 ~~~~s~d---~~~l~~~-~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d----~~---~las~~-~--d~~i~iwd~ 88 (612)
++-.+|. ..+++.. ..+.+.+||+ +|+.++.+.. +.++.+..-|+ |+ ++++.. . +++|.+|++
T Consensus 30 avw~~~~dp~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~i 106 (355)
T 3amr_A 30 AIWLDPKTPQNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAI 106 (355)
T ss_dssp EEECCSSCGGGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEE
T ss_pred cEecCCCCCCccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEE
Confidence 5555553 3343333 3689999999 7888887754 56777777773 22 233333 3 578999977
Q ss_pred C--CCceeeeeee-----ecC-CCeEEEEE--CCC-CCEEEEEeCCCCeeeEEEEEec-------CCceeeeeccCCceE
Q 007229 89 H--NGFVLKNEFK-----VLS-GRIDDLQW--SPD-GLRIVACGDGKGKSFVRAFMWD-------SGTTVGDFDGHSRRV 150 (612)
Q Consensus 89 ~--~~~~~~~~~~-----~~~-~~i~~~~~--s~~-~~~l~~~~~~~~~~~i~i~~~~-------~~~~~~~~~~~~~~v 150 (612)
. ++. +...-. ... ..+..+++ +|. +++.+..+...+ .+..|... +.+.+++|.-. ..+
T Consensus 107 Dp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G--~~~q~~l~~~~~g~~~~~lVR~f~lg-sq~ 182 (355)
T 3amr_A 107 DGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEG--EFEQYELKADKNGYISGKKVRAFKMN-SQT 182 (355)
T ss_dssp CTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSS--EEEEEEEEECTTSCEEEEEEEEEECS-SCE
T ss_pred CCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCC--eEEEEEEEeCCCCcccceEEEEecCC-CCc
Confidence 4 433 322211 112 56777888 774 554344443333 34443331 33566776643 467
Q ss_pred EEEEEcCCCCEEEEEeecCCeEEEEeCC-----CCeeeeccc-c-cccceEEEEE--CCCCC-eEEEEE-cCCcEEEEec
Q 007229 151 LSCEFKPTRPFRIATCGEDFLVNFYEGP-----PFKFKLSHR-E-HSNFVNCIRF--SPDGS-KLISVS-SDRKGLIYDG 219 (612)
Q Consensus 151 ~~~~~~~~~~~~l~~~~~d~~i~~wd~~-----~~~~~~~~~-~-~~~~v~~~~~--s~~~~-~l~~~~-~dg~i~vwd~ 219 (612)
..+...+... .|..+-++.-|..++.+ +++.+..+. + -...+..|++ .++++ +|++++ .+.+..+||.
T Consensus 183 EgcvvDd~~g-~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr 261 (355)
T 3amr_A 183 EGMAADDEYG-RLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDR 261 (355)
T ss_dssp EEEEEETTTT-EEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEES
T ss_pred ceEEEcCCCC-eEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEEC
Confidence 8888888877 58888888777777755 344444332 2 2346888888 56666 677666 4678999998
Q ss_pred C-CCCeeeeee
Q 007229 220 K-SGEKIGEFS 229 (612)
Q Consensus 220 ~-~~~~~~~~~ 229 (612)
+ +.+.+..+.
T Consensus 262 ~~~~~~vg~f~ 272 (355)
T 3amr_A 262 QGKNKYVADFR 272 (355)
T ss_dssp STTCCEEEEEE
T ss_pred CCCCcEEEEEE
Confidence 6 566666663
No 305
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=98.22 E-value=0.0021 Score=55.76 Aligned_cols=236 Identities=11% Similarity=0.070 Sum_probs=156.8
Q ss_pred EEEEccCCCEEEEecCCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecC
Q 007229 23 LISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLS 102 (612)
Q Consensus 23 ~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~ 102 (612)
+.-.+|..+.||.-.+..+.|+|+++.+.++...- ...|.-=.|-.+.. |+..+ +..|.-|++.......+.+..|.
T Consensus 71 sAIMnP~~~ViALrag~~LQiFnletK~klks~~~-~e~VvfWkWis~~~-L~lVT-~taVyHWs~~~~s~P~kvFdR~~ 147 (365)
T 2xzh_A 71 SAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLNT-VALVT-DNAVYHWSMEGESQPVKMFDRHS 147 (365)
T ss_dssp EEEECSSSSEEEEEETTEEEEEETTTTEEEEEEEC-SSCEEEEEECSSSE-EEEEE-SSEEEEEESSTTCCCEEEEECCG
T ss_pred eeeeCCCccEEEEecCCeEEEechHHhhhhcceec-CCccEEEEecCCCe-EEEEc-CCcEEEEcccCCCCCceeeecch
Confidence 55669999999999999999999999888776653 45676667766554 44443 34899999987555666666654
Q ss_pred ----CCeEEEEECCCCCEEEEEeCC--CCeeeEEEEEec-CCceeeeeccCCceEEEEEEcCCC--CEEEEEeecC---C
Q 007229 103 ----GRIDDLQWSPDGLRIVACGDG--KGKSFVRAFMWD-SGTTVGDFDGHSRRVLSCEFKPTR--PFRIATCGED---F 170 (612)
Q Consensus 103 ----~~i~~~~~s~~~~~l~~~~~~--~~~~~i~i~~~~-~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~d---~ 170 (612)
..|..-.-+++.++++..|-. .+.....+-++. ..+.-+.+++|......+.+..+. ..+++.+... +
T Consensus 148 ~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~ 227 (365)
T 2xzh_A 148 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGG 227 (365)
T ss_dssp GGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEE
T ss_pred hcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCc
Confidence 368888889999998876631 222223444444 334455678887666554443221 1234433332 5
Q ss_pred eEEEEeCCCC---eeeec-------cc--ccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccE
Q 007229 171 LVNFYEGPPF---KFKLS-------HR--EHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSI 238 (612)
Q Consensus 171 ~i~~wd~~~~---~~~~~-------~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v 238 (612)
.+++-++... ..... +. ...+-..+|..++.-..++..+.-|.+++||++++.++..-. -....|
T Consensus 228 kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~nr---IS~d~i 304 (365)
T 2xzh_A 228 KLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNR---ISGETI 304 (365)
T ss_dssp EEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEE---CCSSCE
T ss_pred EEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEec---cCCCce
Confidence 7888887432 11110 11 123445678888877788889999999999999999998874 445666
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEEe
Q 007229 239 YAVSWSPDGKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 239 ~~i~~~~~~~~l~~~~~dg~i~iw~~ 264 (612)
..-+..++..-++.....|.|.--.+
T Consensus 305 F~ta~~~~~~Gi~~Vnr~GqVl~v~v 330 (365)
T 2xzh_A 305 FVTAPHEATAGIIGVNRKGQVLSVCV 330 (365)
T ss_dssp EEEEEEGGGTEEEEEETTCEEEEEEE
T ss_pred EEecccCCCCcEEEEcCCCEEEEEEE
Confidence 66666655555666778888877777
No 306
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=98.17 E-value=0.0011 Score=58.82 Aligned_cols=214 Identities=8% Similarity=0.002 Sum_probs=128.7
Q ss_pred EccCCCEEEEec---CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCc--------------CeEEEeec
Q 007229 26 GNPKTDTILYCN---GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVS--------------GSVRIWGT 88 (612)
Q Consensus 26 ~s~d~~~l~~~~---~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d--------------~~i~iwd~ 88 (612)
|+++|.+|.+.. ++.|+..+.+.....+ +... .+--++++|++|.-+... ..|+..++
T Consensus 21 ~~~~g~~iy~~n~~d~~~ly~~~~dg~~~~~-l~~~----~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~ 95 (302)
T 3s25_A 21 FCESDGEVFFSNTNDNGRLYAMNIDGSNIHK-LSND----TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKR 95 (302)
T ss_dssp EEEETTEEEEEEGGGTTEEEEEETTSCSCEE-EEEE----EEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEET
T ss_pred EEEeCCEEEEEeCCCCceEEEEcCCCCCCEE-ccCC----ceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeC
Confidence 457899999986 5788888877655444 4432 245668999999877543 46777777
Q ss_pred CCCceeeeeeeecCCCeEEEEECCCCCEEEEEe--CCCCeeeEEEEEec-CCceeeeeccCCceEEEEEEcCCCCEEEEE
Q 007229 89 HNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACG--DGKGKSFVRAFMWD-SGTTVGDFDGHSRRVLSCEFKPTRPFRIAT 165 (612)
Q Consensus 89 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~~~~~~~i~i~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 165 (612)
...+. ..+... ....|++++++|+... ..+. -.|+..+ .+.....+..+.. .+|+|+++.+..+
T Consensus 96 dg~~~--~~l~~~----~~~~~s~~g~~Iy~~~~~~~~~---~~Iy~~~~dGs~~~~lt~~~~----~~~~~~g~~iy~t 162 (302)
T 3s25_A 96 NGHGS--TVLDPD----PCIYASLIGNYIYYLHYDTQTA---TSLYRIRIDGEEKKKIKNHYL----FTCNTSDRYFYYN 162 (302)
T ss_dssp TSCCC--EEEECS----CEEEEEEETTEEEEEEESSSSC---EEEEEEETTSCCCEEEESSCC----CCSEEETTEEEEE
T ss_pred CCCcc--eEeecC----CccEEEEeCCEEEEEeecCCCC---ceEEEEECCCCCeEEEeCCCc----eEeeEECCEEEEE
Confidence 77652 122211 1237888999999876 2222 2455555 3444445554433 4678889876666
Q ss_pred eecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCC--cEEEEecCCCCeeeeeeccCCccccEEEEEE
Q 007229 166 CGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDR--KGLIYDGKSGEKIGEFSSEDGHHGSIYAVSW 243 (612)
Q Consensus 166 ~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~ 243 (612)
......|..-++..+.....+.+ ... ..++|++.+|+-....+ .|..-++.... ...+. ...+ ..|
T Consensus 163 ~~g~~~Iy~~~l~g~~~~~l~~~---~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~-~~~Lt-----~~~~--~~~ 230 (302)
T 3s25_A 163 NPKNGQLYRYDTASQSEALFYDC---NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPN-PVVLT-----EANI--EHY 230 (302)
T ss_dssp CTTTCCEEEEETTTTEEEEEECS---CEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCC-CEECS-----CSCE--EEE
T ss_pred eCCCceEEEEECCCCCEEEEeCC---Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCCCC-eEEEe-----CCCc--ceE
Confidence 65567888888877665433332 222 34569999988776543 46666665444 33331 1223 347
Q ss_pred ecCCCEEEEEeCCCcEEEEEeecCCC
Q 007229 244 SPDGKKVLTVSADKSAKVWEILEDGS 269 (612)
Q Consensus 244 ~~~~~~l~~~~~dg~i~iw~~~~~~~ 269 (612)
+|++++|..+...+.-.|+.+..++.
T Consensus 231 ~~~g~~Iy~~~~~~~~~i~~~~~DG~ 256 (302)
T 3s25_A 231 NVYGSLIFYQRGGDNPALCVVKNDGT 256 (302)
T ss_dssp EEETTEEEEEECSSSCEEEEEETTSC
T ss_pred EECCCEEEEEECCCCcEEEEEECCCC
Confidence 88888887764332334555543333
No 307
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.13 E-value=0.001 Score=58.52 Aligned_cols=152 Identities=14% Similarity=0.068 Sum_probs=102.7
Q ss_pred EEEEccCCCEEEEec--CCEEEEEeCCCCceeeE-ecc----C--CCceEEEEE---CCCCCEEEEee------------
Q 007229 23 LISGNPKTDTILYCN--GRSVLIRYLDKPLHVEF-YGE----H--GYPVTVARY---SPNGEWIASAD------------ 78 (612)
Q Consensus 23 ~~~~s~d~~~l~~~~--~~~i~i~~~~~~~~~~~-~~~----h--~~~v~~~~~---s~d~~~las~~------------ 78 (612)
+++|.+....+.+++ .+.|..||...+..... +.+ . ...+..+.| .|+++++++..
T Consensus 17 ~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~ 96 (334)
T 2p9w_A 17 DTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSS 96 (334)
T ss_dssp CEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCS
T ss_pred CccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccccc
Confidence 678988777777776 79999999986654333 222 1 124689999 68988888643
Q ss_pred -CcCeEEEeecC---CCceeee-eeeec-----------CCCeEEEEECCCCCEEEEEeCC-CCeeeEEEEEec-CCcee
Q 007229 79 -VSGSVRIWGTH---NGFVLKN-EFKVL-----------SGRIDDLQWSPDGLRIVACGDG-KGKSFVRAFMWD-SGTTV 140 (612)
Q Consensus 79 -~d~~i~iwd~~---~~~~~~~-~~~~~-----------~~~i~~~~~s~~~~~l~~~~~~-~~~~~i~i~~~~-~~~~~ 140 (612)
.+..|..+|+. +++.+.. .+... ......++..++|+..++.+.. . .|+..+ .|+.+
T Consensus 97 ~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~-----~I~rV~pdG~~~ 171 (334)
T 2p9w_A 97 HGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMP-----AIARVSADGKTV 171 (334)
T ss_dssp SSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSC-----EEEEECTTSCCE
T ss_pred CCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCC-----eEEEEeCCCCEE
Confidence 25779999999 6664321 11111 1248899999999999988776 5 477777 34433
Q ss_pred eeec------cCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCC
Q 007229 141 GDFD------GHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPF 180 (612)
Q Consensus 141 ~~~~------~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~ 180 (612)
..+. ......+.|+++|++..+++..+ .|.+.-+|+...
T Consensus 172 ~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~-~g~L~~fD~~~p 216 (334)
T 2p9w_A 172 STFAWESGNGGQRPGYSGITFDPHSNKLIAFGG-PRALTAFDVSKP 216 (334)
T ss_dssp EEEEECCCCSSSCCSCSEEEEETTTTEEEEESS-SSSEEEEECSSS
T ss_pred eeeeecCCCcccccCcceEEEeCCCCEEEEEcC-CCeEEEEcCCCC
Confidence 3321 11123568999999996555555 999999998743
No 308
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=98.12 E-value=0.0005 Score=62.04 Aligned_cols=197 Identities=9% Similarity=0.054 Sum_probs=118.5
Q ss_pred eEEEEccCCCEEEEe-------------cCCEEEEEeCCCC--ceee-Eecc-----CCCceEEEEECC--CCC-EEEEe
Q 007229 22 ILISGNPKTDTILYC-------------NGRSVLIRYLDKP--LHVE-FYGE-----HGYPVTVARYSP--NGE-WIASA 77 (612)
Q Consensus 22 ~~~~~s~d~~~l~~~-------------~~~~i~i~~~~~~--~~~~-~~~~-----h~~~v~~~~~s~--d~~-~las~ 77 (612)
-.+++.|+|..++++ ..|.|.++|++++ +... .+.+ ..-....+.+.+ +|+ +|..+
T Consensus 53 EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vv 132 (355)
T 3sre_A 53 EDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVV 132 (355)
T ss_dssp CEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEE
T ss_pred ceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEE
Confidence 356788998777776 3789999999842 3221 1222 233566777755 454 44444
Q ss_pred e---CcCeEEEeecCCCceeee---eeeec-CCCeEEEEECCCCCEEEEEeCC-C-----------CeeeEEEEEecCCc
Q 007229 78 D---VSGSVRIWGTHNGFVLKN---EFKVL-SGRIDDLQWSPDGLRIVACGDG-K-----------GKSFVRAFMWDSGT 138 (612)
Q Consensus 78 ~---~d~~i~iwd~~~~~~~~~---~~~~~-~~~i~~~~~s~~~~~l~~~~~~-~-----------~~~~i~i~~~~~~~ 138 (612)
. .+.+|.+|++........ .+.+. -...+.+++.++|...++...- . ....-.++.++.++
T Consensus 133 nh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~ 212 (355)
T 3sre_A 133 NHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPND 212 (355)
T ss_dssp ECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTTC
T ss_pred ECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECCe
Confidence 2 256788988876432222 22221 2357899999999877765410 0 00124577777653
Q ss_pred eeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCC-Cee--eecccccccceEEEEECC-CCCeEEEEEcC-Cc
Q 007229 139 TVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPP-FKF--KLSHREHSNFVNCIRFSP-DGSKLISVSSD-RK 213 (612)
Q Consensus 139 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~-~~~--~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d-g~ 213 (612)
+..+...-.....++|+||++.+.++-+..+.|..|++.. ++. ...+ ........+++.+ +|++.+++..+ +.
T Consensus 213 -~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~~g~~ 290 (355)
T 3sre_A 213 -VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHPNGMR 290 (355)
T ss_dssp -CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEESCHHH
T ss_pred -EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEecCCceE
Confidence 3333333455788999999997777777889999999753 322 1123 2245677888988 58866655533 34
Q ss_pred EEEEecC
Q 007229 214 GLIYDGK 220 (612)
Q Consensus 214 i~vwd~~ 220 (612)
|..|+.+
T Consensus 291 v~~~~P~ 297 (355)
T 3sre_A 291 IFFYDAE 297 (355)
T ss_dssp HHSCCTT
T ss_pred EEEECCC
Confidence 4444543
No 309
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.11 E-value=2.1e-05 Score=79.22 Aligned_cols=205 Identities=8% Similarity=-0.063 Sum_probs=123.9
Q ss_pred CceeEEEEccCCCEEEEec--CCEEEEEeCCC----CceeeEeccCCCceEEEEECCCC-CEEEEeeCcCeEEEeecCCC
Q 007229 19 GRGILISGNPKTDTILYCN--GRSVLIRYLDK----PLHVEFYGEHGYPVTVARYSPNG-EWIASADVSGSVRIWGTHNG 91 (612)
Q Consensus 19 ~~v~~~~~s~d~~~l~~~~--~~~i~i~~~~~----~~~~~~~~~h~~~v~~~~~s~d~-~~las~~~d~~i~iwd~~~~ 91 (612)
..+.+++|++++..|..+. .+.|..+++.+ ......+...-.....+++.+.+ ++.++-...+.|.+.++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 3567899999888888876 57899999875 23222232222345678888644 44455456788999998866
Q ss_pred ceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec-CCceeeee-ccCCceEEEEEEcCCCCEEEEEeecC
Q 007229 92 FVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD-SGTTVGDF-DGHSRRVLSCEFKPTRPFRIATCGED 169 (612)
Q Consensus 92 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~-~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~d 169 (612)
. ....+.........+++.|++.+|+.+...... +|+..+ .+.....+ .........|+|+|++..+.++-...
T Consensus 486 ~-~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~---~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~ 561 (699)
T 1n7d_A 486 K-RKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPA---KIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKL 561 (699)
T ss_dssp C-EEEECCCSSCCCCCEECCSSSSCCEECCCSSSC---CEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTT
T ss_pred c-eEEEEeCCCCCcceEEEccCCCcEEEcccCCCC---eEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCC
Confidence 4 332333233456788999977666655432211 255444 23322222 22234567899999877667777778
Q ss_pred CeEEEEeCCCCeeeeccc--ccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeee
Q 007229 170 FLVNFYEGPPFKFKLSHR--EHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEF 228 (612)
Q Consensus 170 ~~i~~wd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 228 (612)
+.|..+++........+. ........|++..+ .++++....+.|..++..+++.+..+
T Consensus 562 ~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i 621 (699)
T 1n7d_A 562 HSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLL 621 (699)
T ss_dssp TEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECC
T ss_pred CeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEe
Confidence 899999986533222221 11223445555443 33444445678999998788777666
No 310
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.10 E-value=0.0059 Score=57.69 Aligned_cols=66 Identities=9% Similarity=0.090 Sum_probs=44.2
Q ss_pred ceEEEEECC-CCCeEEEEEc-CCcEEEEecCCCCeeeeeeccCCccccEEEEEE-------ecCCCEEEEEeCCC
Q 007229 192 FVNCIRFSP-DGSKLISVSS-DRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSW-------SPDGKKVLTVSADK 257 (612)
Q Consensus 192 ~v~~~~~s~-~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~-------~~~~~~l~~~~~dg 257 (612)
....|+|+| +...|+.+.. .+.|++.|++++..................++| ++++++|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~ 214 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYD 214 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCC
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCC
Confidence 467899998 3555655554 467889998876665544221112346899999 99999777766554
No 311
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=98.09 E-value=0.0054 Score=55.12 Aligned_cols=230 Identities=12% Similarity=0.047 Sum_probs=126.0
Q ss_pred ceeEEEEccCCCEEEEec-CCEEEEEeCCCCceeeE--e----ccCCCceEEEEECCC----CCEEEEe--eCcCeEEEe
Q 007229 20 RGILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEF--Y----GEHGYPVTVARYSPN----GEWIASA--DVSGSVRIW 86 (612)
Q Consensus 20 ~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~--~----~~h~~~v~~~~~s~d----~~~las~--~~d~~i~iw 86 (612)
....|+|.|||+++++-. .+.|++++..+++.... + .........|+|+|| +.+.++- ..++.|.-|
T Consensus 33 ~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~ 112 (347)
T 3das_A 33 SPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRM 112 (347)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEE
T ss_pred CceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEE
Confidence 567999999999888887 79999998766654221 1 233567889999995 4443332 234566667
Q ss_pred ecCCCc----------eeeeeee-ecCCCeEEEEECCCCCEEEEEeCCCCe--------eeEEEEEec-CCce-------
Q 007229 87 GTHNGF----------VLKNEFK-VLSGRIDDLQWSPDGLRIVACGDGKGK--------SFVRAFMWD-SGTT------- 139 (612)
Q Consensus 87 d~~~~~----------~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~~~~~--------~~i~i~~~~-~~~~------- 139 (612)
.+.... .+...+. .....-..|+|.|||.+.++.++.... ..-.|+.++ .++.
T Consensus 113 ~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf~ 192 (347)
T 3das_A 113 LYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPFP 192 (347)
T ss_dssp EBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSST
T ss_pred EeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCCC
Confidence 665421 1111121 111234679999999888887643210 011344444 2220
Q ss_pred -eeee-ccCCceEEEEEEcCCCCEEEEE-eecCCeEEEEeCCCCee------------------eecccccccceEEEEE
Q 007229 140 -VGDF-DGHSRRVLSCEFKPTRPFRIAT-CGEDFLVNFYEGPPFKF------------------KLSHREHSNFVNCIRF 198 (612)
Q Consensus 140 -~~~~-~~~~~~v~~~~~~~~~~~~l~~-~~~d~~i~~wd~~~~~~------------------~~~~~~~~~~v~~~~~ 198 (612)
...+ .+|. ....++|+|++. +.++ -+.|+.=.+--+..+.. +..+..+......|+|
T Consensus 193 ~~~i~a~G~R-Np~Gla~dp~G~-L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~ 270 (347)
T 3das_A 193 GSPVYSYGHR-NVQGLAWDDKQR-LFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIAY 270 (347)
T ss_dssp TCCEEEBCCS-BCCEEEECTTCC-EEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEEE
T ss_pred CCeEEeeCCC-CcceEEECCCCC-EEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcceEE
Confidence 1111 2333 456789999887 3333 23333222222222211 1111111134567777
Q ss_pred CCCCCeEEEEEcCCcEEEEecCCCCee---eeeeccCCccccEEEEEEecCCCEEEEEe
Q 007229 199 SPDGSKLISVSSDRKGLIYDGKSGEKI---GEFSSEDGHHGSIYAVSWSPDGKKVLTVS 254 (612)
Q Consensus 199 s~~~~~l~~~~~dg~i~vwd~~~~~~~---~~~~~~~~~~~~v~~i~~~~~~~~l~~~~ 254 (612)
. +|..+...-..+.|....++.+... ..+ ..+....+..++..|||.++++..
T Consensus 271 ~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~--l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 271 A-EGSVWMAGLRGERLWRIPLKGTAAAADPQAF--LEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp E-TTEEEEEESTTCSEEEEEEETTEESSCCEEE--STTTSSCEEEEEEEETTEEEEEEC
T ss_pred E-cCceeeccccCCEEEEEEecCCceecceEEe--ecCCCCCccEEEECCCCcEEEEEc
Confidence 6 4555555555566766666554321 112 123456799999999998666654
No 312
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=98.05 E-value=0.0069 Score=55.00 Aligned_cols=237 Identities=11% Similarity=0.061 Sum_probs=158.2
Q ss_pred eEEEEccCCCEEEEecCCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeec
Q 007229 22 ILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVL 101 (612)
Q Consensus 22 ~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~ 101 (612)
-+.-.+|..+.||.-.+..+.|+|+++.+.+....-. ..|.-=.|-.+. .|+..+ +..|.-|++.......+.+..|
T Consensus 69 dsAIMnP~~~iiALrag~~lQiFnle~K~klks~~~~-e~VvfWkWis~~-~l~lVT-~taVyHWsi~~~s~P~kvFdR~ 145 (494)
T 1bpo_A 69 DSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRH 145 (494)
T ss_dssp SEEEECSSSSCEEEEETTEEEEEETTTTEEEEEEECS-SCCCEEEEEETT-EEEEEC-SSEEEEEESSSSCCCEEEEECC
T ss_pred ceeeeCCCCcEEEEecCCeEEEEchHHhhhhcceecC-CCceEEEecCCC-eEEEEc-CCeeEEecccCCCCchhheecc
Confidence 3566789999999999999999999998887766533 455555665444 455543 4589999998755566666665
Q ss_pred C----CCeEEEEECCCCCEEEEEeCC--CCeeeEEEEEec-CCceeeeeccCCceEEEEEEcCCC--CEEEEEeecC---
Q 007229 102 S----GRIDDLQWSPDGLRIVACGDG--KGKSFVRAFMWD-SGTTVGDFDGHSRRVLSCEFKPTR--PFRIATCGED--- 169 (612)
Q Consensus 102 ~----~~i~~~~~s~~~~~l~~~~~~--~~~~~i~i~~~~-~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~d--- 169 (612)
. ..|..-.-+++.++++..|-. .+.....+-++. ..+.-+.+.||......+.+..+. ..+++.+...
T Consensus 146 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g 225 (494)
T 1bpo_A 146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAG 225 (494)
T ss_dssp GGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTC
T ss_pred hhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccchheeeeeeeEEEecCCCCCCceEEEEEEecCCC
Confidence 4 368888889999999876531 112123344444 233445677887766555554322 1234444332
Q ss_pred CeEEEEeCCCC---eeee-----c--cc--ccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCcccc
Q 007229 170 FLVNFYEGPPF---KFKL-----S--HR--EHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGS 237 (612)
Q Consensus 170 ~~i~~wd~~~~---~~~~-----~--~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 237 (612)
+.+++-++... .... . +. .-.+-..+|..++.-..++..+.-|.+.+||++++.++..-. -...+
T Consensus 226 ~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nr---Is~~~ 302 (494)
T 1bpo_A 226 GKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNR---ISGET 302 (494)
T ss_dssp CEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEE---CCSSC
T ss_pred cEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeec---ccCCc
Confidence 68888887432 1111 0 11 123446678888888889999999999999999999998874 44566
Q ss_pred EEEEEEecCCCEEEEEeCCCcEEEEEe
Q 007229 238 IYAVSWSPDGKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 238 v~~i~~~~~~~~l~~~~~dg~i~iw~~ 264 (612)
|..-+...+..-++.....|.|.--.+
T Consensus 303 iF~t~~~~~~~Gi~~Vnr~GqVl~v~v 329 (494)
T 1bpo_A 303 IFVTAPHEATAGIIGVNRKGQVLSVCV 329 (494)
T ss_dssp EEEEEEETTTTEEEEEETTCEEEEEEE
T ss_pred eEEecccCCCCcEEEEccCceEEEEEE
Confidence 766666666566777778888887777
No 313
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=98.03 E-value=0.0071 Score=54.61 Aligned_cols=197 Identities=16% Similarity=0.122 Sum_probs=116.7
Q ss_pred eccCCCceEEEEECCCCCEEEEee------------CcCeEEEeecCCC--ceeeeeeee-----cCCCeEEEEECC--C
Q 007229 55 YGEHGYPVTVARYSPNGEWIASAD------------VSGSVRIWGTHNG--FVLKNEFKV-----LSGRIDDLQWSP--D 113 (612)
Q Consensus 55 ~~~h~~~v~~~~~s~d~~~las~~------------~d~~i~iwd~~~~--~~~~~~~~~-----~~~~i~~~~~s~--~ 113 (612)
+.+-......+++.|+|..+++++ .+|.|.++|..+. +.....+.+ .......+.+.+ +
T Consensus 45 i~~~~~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~d 124 (355)
T 3sre_A 45 VKGIDNGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDD 124 (355)
T ss_dssp CTTCCSCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTT
T ss_pred eCCCCCCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCC
Confidence 444333455677889886655552 6899999999843 322212222 223566777755 4
Q ss_pred CC-EEEEEeCCCCeeeEEEEEecCCc----eeeeeccC-CceEEEEEEcCCCCEEEEEee-----------------cCC
Q 007229 114 GL-RIVACGDGKGKSFVRAFMWDSGT----TVGDFDGH-SRRVLSCEFKPTRPFRIATCG-----------------EDF 170 (612)
Q Consensus 114 ~~-~l~~~~~~~~~~~i~i~~~~~~~----~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~-----------------~d~ 170 (612)
++ +|.++........+.++.++.+. .+..+.+. -.....+++.++|.+ .++.. ..|
T Consensus 125 g~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~f-yvt~~~~ftd~~~~~~e~~~~~~~g 203 (355)
T 3sre_A 125 NTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHF-YATNDHYFIDPYLKSWEMHLGLAWS 203 (355)
T ss_dssp CCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEE-EEEESCSCSSHHHHHHHHHTTCCCE
T ss_pred CcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCE-EecCCcEeCCcccccchhhccCCcc
Confidence 54 56666555434478888888532 22333332 246789999999973 55543 124
Q ss_pred eEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEc-CCcEEEEecCCCCeeeeeeccCCccccEEEEEEec-CCC
Q 007229 171 LVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSS-DRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSP-DGK 248 (612)
Q Consensus 171 ~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~ 248 (612)
.|.-+|.. +.. .+...-...+.++|+||++.|+.+.. .+.|..|++.....+...... ...+..-.+++.+ +|+
T Consensus 204 ~vyr~d~~--~~~-~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~ 279 (355)
T 3sre_A 204 FVTYYSPN--DVR-VVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGD 279 (355)
T ss_dssp EEEEECTT--CCE-EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCC
T ss_pred EEEEEECC--eEE-EeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCc
Confidence 55555553 222 22233345789999999998877654 688999998642222211111 2245677889998 588
Q ss_pred EEEEEeCC
Q 007229 249 KVLTVSAD 256 (612)
Q Consensus 249 ~l~~~~~d 256 (612)
+.+++..+
T Consensus 280 lwva~~~~ 287 (355)
T 3sre_A 280 LWVGCHPN 287 (355)
T ss_dssp EEEEEESC
T ss_pred EEEEecCC
Confidence 77756433
No 314
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=98.03 E-value=0.0076 Score=54.73 Aligned_cols=270 Identities=11% Similarity=0.076 Sum_probs=164.7
Q ss_pred CCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeee
Q 007229 211 DRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLV 290 (612)
Q Consensus 211 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (612)
..++.|.|+.++..+..... .. -+.-.+|..+.++.-. ...+.++|+ ++...++.+.... .+.
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi--~A----dsAIMnP~~~iiALra-g~~lQiFnl----e~K~klks~~~~e------~Vv 109 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPI--SA----DSAIMNPASKVIALKA-GKTLQIFNI----EMKSKMKAHTMTD------DVT 109 (494)
T ss_dssp CCEEEEEETTSTTSCEEEEC--CC----SEEEECSSSSCEEEEE-TTEEEEEET----TTTEEEEEEECSS------CCC
T ss_pred CCeEEEEECCCCCcceeccc--cc----ceeeeCCCCcEEEEec-CCeEEEEch----HHhhhhcceecCC------Cce
Confidence 34788889888766533311 11 2445678777666654 679999999 9999999988764 344
Q ss_pred eeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCccc--ceeEEEEE-ecCCcEEEEEe-------cCCcEEEEEcCCc
Q 007229 291 GCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVK--NVSTLTAL-KISQQTILSSS-------YDGAIIKWIRGVG 360 (612)
Q Consensus 291 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~v~~~~~~-~~~~~~l~~~~-------~dg~i~~wd~~~~ 360 (612)
--.|-+...+.--.+..|+-|++.....+...+.-|.. ...-+.+. +.+.++++..+ -.|.+.+|..+.+
T Consensus 110 fWkWis~~~l~lVT~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~ 189 (494)
T 1bpo_A 110 FWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK 189 (494)
T ss_dssp EEEEEETTEEEEECSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC
T ss_pred EEEecCCCeEEEEcCCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc
Confidence 44555666666667789999998876677666665543 23333444 44566666433 2477889998887
Q ss_pred eeeeeceecccceEEEEeecc-----EEEEecC---CCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEee
Q 007229 361 YSSKLEKKYDARIKCLAAVEE-----VIFTAGF---DNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTE 432 (612)
Q Consensus 361 ~~~~~~~~~~~~i~~~~~~~~-----~l~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (612)
....+.+ |......+..+++ .+..+.. .+++++.++...... ..........+.+.|+.
T Consensus 190 ~sQ~ieG-haa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~---~~~f~kk~vdv~fppe~--------- 256 (494)
T 1bpo_A 190 VSQPIEG-HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTG---NQPFPKKAVDVFFPPEA--------- 256 (494)
T ss_dssp CEEEECC-SEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTT---CCCCCCEEEECCCCTTS---------
T ss_pred ccchhee-eeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccC---CCCccceeeeeeCCccc---------
Confidence 7666555 5555555544321 2222222 268888888544211 01111122222333321
Q ss_pred ccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEE
Q 007229 433 SGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASA 512 (612)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 512 (612)
...-..++.+|+....+..-+.-|.+++||+.++.......+ ...+|-.-+......=++..
T Consensus 257 ----------------~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrI--s~~~iF~t~~~~~~~Gi~~V 318 (494)
T 1bpo_A 257 ----------------QNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRI--SGETIFVTAPHEATAGIIGV 318 (494)
T ss_dssp ----------------TTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEEC--CSSCEEEEEEETTTTEEEEE
T ss_pred ----------------ccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecc--cCCceEEecccCCCCcEEEE
Confidence 123456788999999999999999999999999987433333 33455444444443444444
Q ss_pred cCCCeEEEEecCCcce
Q 007229 513 DGNREAIVWDRVSKEV 528 (612)
Q Consensus 513 ~~d~~i~iwd~~~~~~ 528 (612)
...|.|.--.+.....
T Consensus 319 nr~GqVl~v~v~e~~i 334 (494)
T 1bpo_A 319 NRKGQVLSVCVEEENI 334 (494)
T ss_dssp ETTCEEEEEEECTTTH
T ss_pred ccCceEEEEEEccccc
Confidence 5677776666655544
No 315
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=98.02 E-value=0.003 Score=56.53 Aligned_cols=146 Identities=12% Similarity=0.108 Sum_probs=79.8
Q ss_pred CCCeEEEEecC-----CeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCC-----CeEEEEecCCcceee
Q 007229 461 DGSEAIVGGQN-----GKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGN-----REAIVWDRVSKEVKL 530 (612)
Q Consensus 461 ~~~~l~~~~~d-----g~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----~~i~iwd~~~~~~~~ 530 (612)
++++++.|+.+ ..+.+||+.+++......+......-..+. .++++++.|+.+ ..+.+||+.+.+-..
T Consensus 112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~ 189 (301)
T 2vpj_A 112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVV--ASGVIYCLGGYDGLNILNSVEKYDPHTGHWTN 189 (301)
T ss_dssp TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTTTEEEE
T ss_pred CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEE--ECCEEEEECCCCCCcccceEEEEeCCCCcEEe
Confidence 56677777644 368899998877643333322222222222 267788887754 458899988765432
Q ss_pred ec-ccccccceeEEEecCCCcEEEEeecC-----cEEEEEEccCCCcceeeeecccccCeeeEEEecCceEEEccCC---
Q 007229 531 NN-MLFHTARINCLAWSPSSTMVATGSID-----TCVIIYEIGKPASSRITIKNAHLGGVYGVAFMDDFNVVSSGED--- 601 (612)
Q Consensus 531 ~~-~~~~~~~i~~~~~s~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d--- 601 (612)
.. +......-..+. .++++++.|+.+ ..+.+||..+.....+..+....... ++...+++.++.|+.+
T Consensus 190 ~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~-~~~~~~~~i~v~GG~~~~~ 266 (301)
T 2vpj_A 190 VTPMATKRSGAGVAL--LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYV-GATVLRGRLYAIAGYDGNS 266 (301)
T ss_dssp ECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSC-EEEEETTEEEEECCBCSSS
T ss_pred CCCCCcccccceEEE--ECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccce-eEEEECCEEEEEcCcCCCc
Confidence 11 111111112222 267788888764 46899999873322222222111111 2222277777888765
Q ss_pred --CeEEEEEecc
Q 007229 602 --ACIRVWRLAT 611 (612)
Q Consensus 602 --~~i~~w~~~~ 611 (612)
..+.+||+++
T Consensus 267 ~~~~v~~yd~~~ 278 (301)
T 2vpj_A 267 LLSSIECYDPII 278 (301)
T ss_dssp BEEEEEEEETTT
T ss_pred ccccEEEEcCCC
Confidence 4677888765
No 316
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.88 E-value=0.0074 Score=54.11 Aligned_cols=226 Identities=12% Similarity=0.057 Sum_probs=116.2
Q ss_pred cEEEEEec--CCcEEEEEcCCceeeeecee--cccceEEEEeeccEEEEecCC----CeEEEEecCCCCCCccceeccCC
Q 007229 341 QTILSSSY--DGAIIKWIRGVGYSSKLEKK--YDARIKCLAAVEEVIFTAGFD----NKVWRVPLCEGECGDAEHIDVGS 412 (612)
Q Consensus 341 ~~l~~~~~--dg~i~~wd~~~~~~~~~~~~--~~~~i~~~~~~~~~l~~~~~~----~~i~~~~~~~~~~~~~~~~~~~~ 412 (612)
.+++.|+. ...+..||..+.+....... .......+..++..++.++.+ ..+..+|..+......
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~------- 85 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSK------- 85 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEE-------
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEEC-------
Confidence 45555554 35788999988776554322 112223333466666666654 4566676655432100
Q ss_pred CcceeeecCCCCcEEEEEeeccEEEeecccceeeecc-cceEEEEEEccCCCeEEEEecC------CeEEEEEccCcccc
Q 007229 413 QPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDL-GFTVTACAIAPDGSEAIVGGQN------GKLHIYSISGNTLT 485 (612)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~s~~~~~l~~~~~d------g~v~i~d~~~~~~~ 485 (612)
..++. ......+.+ ++++++.|+.+ ..+.+||..+.+..
T Consensus 86 --------------------------------~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~ 131 (306)
T 3ii7_A 86 --------------------------------LGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWH 131 (306)
T ss_dssp --------------------------------ECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEE
T ss_pred --------------------------------CCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceE
Confidence 00000 001111222 56777777765 46899999887764
Q ss_pred cceeeccccCceEEEEEcCCCcEEEEEcC---------CCeEEEEecCCcceeeecccccccceeEEEecCCCcEEEEee
Q 007229 486 EEMVLEKHRGAITVIQYSPDVSMFASADG---------NREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGS 556 (612)
Q Consensus 486 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~ 556 (612)
....+......-..+. -++++++.|+. -..+.+||+.+.+-...........-.++.. -++++++.|+
T Consensus 132 ~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG 208 (306)
T 3ii7_A 132 TKPSMLTQRCSHGMVE--ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVF-VKDKIFAVGG 208 (306)
T ss_dssp EECCCSSCCBSCEEEE--ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECC
T ss_pred eCCCCcCCcceeEEEE--ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEE-ECCEEEEEeC
Confidence 3333322222222222 36677777764 3458899998875431111111111111222 2677888877
Q ss_pred cC-----cEEEEEEccCCCcceeeeecccccCeeeEEEecCceEEEccCC-----CeEEEEEecc
Q 007229 557 ID-----TCVIIYEIGKPASSRITIKNAHLGGVYGVAFMDDFNVVSSGED-----ACIRVWRLAT 611 (612)
Q Consensus 557 ~d-----~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d-----~~i~~w~~~~ 611 (612)
.+ ..+.+||..+.....+..+....... .+...++..++.|+.+ ..+.+||+++
T Consensus 209 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~ 272 (306)
T 3ii7_A 209 QNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTV-KCAAVGSIVYVLAGFQGVGRLGHILEYNTET 272 (306)
T ss_dssp EETTEEBCCEEEEETTTTEEEECCCCSCCBSCC-EEEEETTEEEEEECBCSSSBCCEEEEEETTT
T ss_pred CCCCCCCceEEEeeCCCCcEEECCCCCCCccce-eEEEECCEEEEEeCcCCCeeeeeEEEEcCCC
Confidence 54 35889998873322232222111111 2222277778888744 5688888765
No 317
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.83 E-value=0.0059 Score=54.66 Aligned_cols=147 Identities=18% Similarity=0.233 Sum_probs=79.5
Q ss_pred CCCeEEEEecCC-----eEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCC-------CeEEEEecCCcce
Q 007229 461 DGSEAIVGGQNG-----KLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGN-------REAIVWDRVSKEV 528 (612)
Q Consensus 461 ~~~~l~~~~~dg-----~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-------~~i~iwd~~~~~~ 528 (612)
++++++.|+.++ .+.+||+.+.+......+.........+. -++++++.|+.+ ..+.+||+.+.+-
T Consensus 108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W 185 (302)
T 2xn4_A 108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV--VGGLLYAVGGYDVASRQCLSTVECYNATTNEW 185 (302)
T ss_dssp TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCEETTTTEECCCEEEEETTTTEE
T ss_pred CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE--ECCEEEEEeCCCCCCCccccEEEEEeCCCCcE
Confidence 566777777553 58889988877643333332222222222 266777777643 3588999887654
Q ss_pred eee-cccccccceeEEEecCCCcEEEEeecCc-----EEEEEEccCCCcceeeeecccccCeeeEEEecCceEEEccCCC
Q 007229 529 KLN-NMLFHTARINCLAWSPSSTMVATGSIDT-----CVIIYEIGKPASSRITIKNAHLGGVYGVAFMDDFNVVSSGEDA 602 (612)
Q Consensus 529 ~~~-~~~~~~~~i~~~~~s~~~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~ 602 (612)
... .+......-..+.+ ++++++.|+.++ .+.+||..+.....+..+...... ..++..++..++.|+.++
T Consensus 186 ~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~-~~~~~~~~~i~v~GG~~~ 262 (302)
T 2xn4_A 186 TYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRN-AGVCAVNGLLYVVGGDDG 262 (302)
T ss_dssp EEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBS-CEEEEETTEEEEECCBCS
T ss_pred EECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCcccc-CeEEEECCEEEEECCcCC
Confidence 211 11111111122222 678888887653 688999987332222222111111 122223777788887653
Q ss_pred -----eEEEEEeccC
Q 007229 603 -----CIRVWRLATE 612 (612)
Q Consensus 603 -----~i~~w~~~~~ 612 (612)
.+.+||++++
T Consensus 263 ~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 263 SCNLASVEYYNPTTD 277 (302)
T ss_dssp SSBCCCEEEEETTTT
T ss_pred CcccccEEEEcCCCC
Confidence 4888887653
No 318
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.75 E-value=0.012 Score=52.83 Aligned_cols=146 Identities=15% Similarity=0.165 Sum_probs=79.7
Q ss_pred CCCeEEEEecC-----CeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCC-----CeEEEEecCCcceee
Q 007229 461 DGSEAIVGGQN-----GKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGN-----REAIVWDRVSKEVKL 530 (612)
Q Consensus 461 ~~~~l~~~~~d-----g~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----~~i~iwd~~~~~~~~ 530 (612)
++++++.|+.+ ..+.+||+.+.+......+......-..+.+ ++++++.|+.+ ..+.+||+.+.+-..
T Consensus 121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~ 198 (308)
T 1zgk_A 121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRM 198 (308)
T ss_dssp TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEE
T ss_pred CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEee
Confidence 56667776643 3688999988776433333322222223333 67777777754 458899988765431
Q ss_pred ec-ccccccceeEEEecCCCcEEEEeecC-----cEEEEEEccCCCcceeeeecccccCeeeEEEecCceEEEccCC---
Q 007229 531 NN-MLFHTARINCLAWSPSSTMVATGSID-----TCVIIYEIGKPASSRITIKNAHLGGVYGVAFMDDFNVVSSGED--- 601 (612)
Q Consensus 531 ~~-~~~~~~~i~~~~~s~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d--- 601 (612)
.. +......-.++.+ ++++++.|+.+ ..+.+||+.+.....+..+...... .++...+++.++.||.+
T Consensus 199 ~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~-~~~~~~~~~i~v~GG~~~~~ 275 (308)
T 1zgk_A 199 ITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSA-LGITVHQGRIYVLGGYDGHT 275 (308)
T ss_dssp CCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBS-CEEEEETTEEEEECCBCSSC
T ss_pred CCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccc-eEEEEECCEEEEEcCcCCCc
Confidence 11 1111111122222 67788888764 4589999987332222222211111 12222377778887743
Q ss_pred --CeEEEEEecc
Q 007229 602 --ACIRVWRLAT 611 (612)
Q Consensus 602 --~~i~~w~~~~ 611 (612)
..+.+||+++
T Consensus 276 ~~~~v~~yd~~~ 287 (308)
T 1zgk_A 276 FLDSVECYDPDT 287 (308)
T ss_dssp BCCEEEEEETTT
T ss_pred ccceEEEEcCCC
Confidence 4577888765
No 319
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.68 E-value=0.024 Score=50.64 Aligned_cols=104 Identities=11% Similarity=0.111 Sum_probs=60.8
Q ss_pred CCCeEEEEecC-----CeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCC-----CeEEEEecCCcceee
Q 007229 461 DGSEAIVGGQN-----GKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGN-----REAIVWDRVSKEVKL 530 (612)
Q Consensus 461 ~~~~l~~~~~d-----g~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----~~i~iwd~~~~~~~~ 530 (612)
++++++.|+.+ ..+.+||+.+.+......+.........+. -++++++.|+.+ ..+.+||+.+.+-..
T Consensus 159 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~ 236 (301)
T 2vpj_A 159 SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVAL--LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTT 236 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEEE
T ss_pred CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEE--ECCEEEEEeCCCCCcccceEEEEeCCCCcEEE
Confidence 66777777654 468999998887643333322222222222 267788888764 468999998776432
Q ss_pred ec-ccccccceeEEEecCCCcEEEEeecC-----cEEEEEEccC
Q 007229 531 NN-MLFHTARINCLAWSPSSTMVATGSID-----TCVIIYEIGK 568 (612)
Q Consensus 531 ~~-~~~~~~~i~~~~~s~~~~~l~s~~~d-----~~i~iwd~~~ 568 (612)
.. +........++. -++++++.|+.+ ..+.+||.++
T Consensus 237 ~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~ 278 (301)
T 2vpj_A 237 VTSMTTPRCYVGATV--LRGRLYAIAGYDGNSLLSSIECYDPII 278 (301)
T ss_dssp ECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBEEEEEEEETTT
T ss_pred CCCCCCcccceeEEE--ECCEEEEEcCcCCCcccccEEEEcCCC
Confidence 11 111111112222 267788888765 4688889887
No 320
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.65 E-value=0.03 Score=50.12 Aligned_cols=191 Identities=12% Similarity=0.039 Sum_probs=100.5
Q ss_pred CcEEEEEecC----CcEEEEEcCCceeeeecee--cccceEEEEeeccEEEEecCC------CeEEEEecCCCCCCccce
Q 007229 340 QQTILSSSYD----GAIIKWIRGVGYSSKLEKK--YDARIKCLAAVEEVIFTAGFD------NKVWRVPLCEGECGDAEH 407 (612)
Q Consensus 340 ~~~l~~~~~d----g~i~~wd~~~~~~~~~~~~--~~~~i~~~~~~~~~l~~~~~~------~~i~~~~~~~~~~~~~~~ 407 (612)
+.+++.|+.+ ..+.+||..+......... ..........++..++.++.+ ..+.+||..+..-...
T Consensus 56 ~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~-- 133 (306)
T 3ii7_A 56 NVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTK-- 133 (306)
T ss_dssp TEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEE--
T ss_pred CEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeC--
Confidence 6677777755 6788999988765544321 112222333466666777655 3566777665432100
Q ss_pred eccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEec---------CCeEEEEE
Q 007229 408 IDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQ---------NGKLHIYS 478 (612)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---------dg~v~i~d 478 (612)
..++....-.+++. -++++++.|+. -..+.+||
T Consensus 134 -------------------------------------~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~yd 175 (306)
T 3ii7_A 134 -------------------------------------PSMLTQRCSHGMVE-ANGLIYVCGGSLGNNVSGRVLNSCEVYD 175 (306)
T ss_dssp -------------------------------------CCCSSCCBSCEEEE-ETTEEEEECCEESCTTTCEECCCEEEEE
T ss_pred -------------------------------------CCCcCCcceeEEEE-ECCEEEEECCCCCCCCcccccceEEEeC
Confidence 00000000011111 25566666654 34588999
Q ss_pred ccCcccccceeeccccCceEEEEEcCCCcEEEEEcCC-----CeEEEEecCCcceeee-cccccccceeEEEecCCCcEE
Q 007229 479 ISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGN-----REAIVWDRVSKEVKLN-NMLFHTARINCLAWSPSSTMV 552 (612)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~-~~~~~~~~i~~~~~s~~~~~l 552 (612)
+.+.+......+......-..+.+ ++++++.|+.+ ..+.+||+.+.+-... .+........++.+ +++++
T Consensus 176 ~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~ 251 (306)
T 3ii7_A 176 PATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVY 251 (306)
T ss_dssp TTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEE
T ss_pred CCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEE
Confidence 988876433333222222222222 67777777653 3588999887653211 11111111222333 67788
Q ss_pred EEeecC-----cEEEEEEccCCCccee
Q 007229 553 ATGSID-----TCVIIYEIGKPASSRI 574 (612)
Q Consensus 553 ~s~~~d-----~~i~iwd~~~~~~~~~ 574 (612)
+.|+.+ ..+.+||..+.....+
T Consensus 252 v~GG~~~~~~~~~~~~yd~~~~~W~~~ 278 (306)
T 3ii7_A 252 VLAGFQGVGRLGHILEYNTETDKWVAN 278 (306)
T ss_dssp EEECBCSSSBCCEEEEEETTTTEEEEE
T ss_pred EEeCcCCCeeeeeEEEEcCCCCeEEeC
Confidence 888754 5689999987443333
No 321
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.57 E-value=0.031 Score=50.10 Aligned_cols=105 Identities=13% Similarity=0.143 Sum_probs=60.7
Q ss_pred CCCeEEEEecC-----CeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCC-----CeEEEEecCCcceee
Q 007229 461 DGSEAIVGGQN-----GKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGN-----REAIVWDRVSKEVKL 530 (612)
Q Consensus 461 ~~~~l~~~~~d-----g~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----~~i~iwd~~~~~~~~ 530 (612)
++++++.|+.+ ..+.+||+.+.+......+......-..+.+ ++++++.|+.+ ..+.+||+.+.+-..
T Consensus 168 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~ 245 (308)
T 1zgk_A 168 NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTF 245 (308)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEE
T ss_pred CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEE
Confidence 56677777654 4689999988776433333322222233333 67788888764 468999998875432
Q ss_pred ec-ccccccceeEEEecCCCcEEEEeecC-----cEEEEEEccCC
Q 007229 531 NN-MLFHTARINCLAWSPSSTMVATGSID-----TCVIIYEIGKP 569 (612)
Q Consensus 531 ~~-~~~~~~~i~~~~~s~~~~~l~s~~~d-----~~i~iwd~~~~ 569 (612)
.. +.........+. -++++++.|+.+ ..+.+||..+.
T Consensus 246 ~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 246 VAPMKHRRSALGITV--HQGRIYVLGGYDGHTFLDSVECYDPDTD 288 (308)
T ss_dssp CCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred CCCCCCCccceEEEE--ECCEEEEEcCcCCCcccceEEEEcCCCC
Confidence 11 111111111222 267788888754 46888888873
No 322
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=97.54 E-value=0.063 Score=50.85 Aligned_cols=104 Identities=13% Similarity=0.065 Sum_probs=64.9
Q ss_pred ceeEEEEccCCCEEEEecC-CEEEEEeCCCCceeeE--ecc------CCCceEEEEECCC---CCEEEEe-eC-------
Q 007229 20 RGILISGNPKTDTILYCNG-RSVLIRYLDKPLHVEF--YGE------HGYPVTVARYSPN---GEWIASA-DV------- 79 (612)
Q Consensus 20 ~v~~~~~s~d~~~l~~~~~-~~i~i~~~~~~~~~~~--~~~------h~~~v~~~~~s~d---~~~las~-~~------- 79 (612)
...+|+|.|||+++++-.. +.|++++..+++.... +.. .......|+|+|| +.+|..+ +.
T Consensus 28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~ 107 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTD 107 (454)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--
T ss_pred CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCc
Confidence 5679999999998887775 5798888765554322 221 2456779999995 4444433 22
Q ss_pred -----cCeEEEeecCCCc-------eeeeeee-ecCCCeEEEEECCCCCEEEEEeCC
Q 007229 80 -----SGSVRIWGTHNGF-------VLKNEFK-VLSGRIDDLQWSPDGLRIVACGDG 123 (612)
Q Consensus 80 -----d~~i~iwd~~~~~-------~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~~ 123 (612)
...|.-+++.... .+...+. ........|+|.|||++.++.++.
T Consensus 108 ~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd~ 164 (454)
T 1cru_A 108 KELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGDQ 164 (454)
T ss_dssp CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECCT
T ss_pred cccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECCC
Confidence 2356666654321 1111111 112357899999999988887753
No 323
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.49 E-value=0.013 Score=53.22 Aligned_cols=143 Identities=13% Similarity=0.176 Sum_probs=92.3
Q ss_pred EccCCCeEEEEecCCeEEEEEccCcccccceeeccc----cCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceee---
Q 007229 458 IAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKH----RGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKL--- 530 (612)
Q Consensus 458 ~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~----~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~--- 530 (612)
...+|..++++- ++.||.-++..... .+.+... -..|..+..+|+|++||..+. ..|.|-.+..+....
T Consensus 28 ~~~n~t~i~~a~-~n~iR~~~i~~~~~--Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~ 103 (452)
T 3pbp_A 28 SSQNGTRIVFIQ-DNIIRWYNVLTDSL--YHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDV 103 (452)
T ss_dssp EETTTTEEEEEE-TTEEEEEETTTCSS--CEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCH
T ss_pred EEcCCCEEEEEE-CCEEEEEECCCCCc--ceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCccc
Confidence 344555555543 46788888774432 2333322 235888999999999999865 589999887332110
Q ss_pred --------ecccc------cccceeEEEecCC---CcEEEEeecCcEEEEEEccCCCcceeeeec---------ccccCe
Q 007229 531 --------NNMLF------HTARINCLAWSPS---STMVATGSIDTCVIIYEIGKPASSRITIKN---------AHLGGV 584 (612)
Q Consensus 531 --------~~~~~------~~~~i~~~~~s~~---~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~---------~h~~~v 584 (612)
..+.- ...+|..+.|+|- +..|++-..|+.|++||+.....++. .++ .+...|
T Consensus 104 ~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev 182 (452)
T 3pbp_A 104 SIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDI 182 (452)
T ss_dssp HHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCE
T ss_pred ccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceE
Confidence 01110 2467999999994 45789999999999999986331222 332 122578
Q ss_pred eeEEEe-cCceEEE--ccCCCeEE
Q 007229 585 YGVAFM-DDFNVVS--SGEDACIR 605 (612)
Q Consensus 585 ~~~~~~-~~~~l~s--~~~d~~i~ 605 (612)
.+++|. ++-.|.. ..++|.|+
T Consensus 183 ~S~~Fg~~~lTLYvl~~t~~GDIY 206 (452)
T 3pbp_A 183 TDLEFSKDGLTLYCLNTTEGGDIF 206 (452)
T ss_dssp EEEEECTTSSCEEEEECTTSCEEE
T ss_pred EEEEEcCCCcEEEEEecCCCCCEE
Confidence 899999 5554555 55778775
No 324
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.45 E-value=0.052 Score=47.85 Aligned_cols=211 Identities=9% Similarity=0.063 Sum_probs=120.3
Q ss_pred ccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeee-cccc----c--ccceEEEEE---CCCCCeEEEEEc---
Q 007229 144 DGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKL-SHRE----H--SNFVNCIRF---SPDGSKLISVSS--- 210 (612)
Q Consensus 144 ~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~-~~~~----~--~~~v~~~~~---s~~~~~l~~~~~--- 210 (612)
+...-...+++|++....++++.-..++|..||...+.... .+.+ . ...+..|.| .|+++++++...
T Consensus 9 ~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~a 88 (334)
T 2p9w_A 9 KVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKS 88 (334)
T ss_dssp CCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTT
T ss_pred cCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccc
Confidence 33444556788988766445555578999999987554322 2322 1 124689999 688777665432
Q ss_pred ----------CCcEEEEecC---CCCeeeeeeccC---C-------ccccEEEEEEecCCCEEEEEeCC-CcEEEEEeec
Q 007229 211 ----------DRKGLIYDGK---SGEKIGEFSSED---G-------HHGSIYAVSWSPDGKKVLTVSAD-KSAKVWEILE 266 (612)
Q Consensus 211 ----------dg~i~vwd~~---~~~~~~~~~~~~---~-------~~~~v~~i~~~~~~~~l~~~~~d-g~i~iw~~~~ 266 (612)
+..+..+|+. +++.+....... + .......++..++|+..++.+.. +.|...+.
T Consensus 89 f~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~p-- 166 (334)
T 2p9w_A 89 FNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSA-- 166 (334)
T ss_dssp TCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECT--
T ss_pred ccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeC--
Confidence 5779999999 787765552110 0 11358899999999988888877 76555553
Q ss_pred CCCCCeeEeeeeccCcc-ccceeeeeeecc--CCEEEEEEcCCEEEEEEcCCCCCCceeec--Cc---ccceeEEEEEec
Q 007229 267 DGSGGRVIKTFASSTSN-AVEDMLVGCLWQ--NDHLITVSLGGIISIFSASNLDKAPLSFS--GH---VKNVSTLTALKI 338 (612)
Q Consensus 267 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~---~~~v~~~~~~~~ 338 (612)
.++.+..+...... .......++.+. +..|++....|.+..+|+..+........ +. ......+.....
T Consensus 167 ---dG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~ 243 (334)
T 2p9w_A 167 ---DGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPV 243 (334)
T ss_dssp ---TSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEE
T ss_pred ---CCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCccccccccc
Confidence 33333333222111 111122344444 67788887799999999874322111121 21 122344311122
Q ss_pred CCcE-EEEEecCCcEEEEEcCC
Q 007229 339 SQQT-ILSSSYDGAIIKWIRGV 359 (612)
Q Consensus 339 ~~~~-l~~~~~dg~i~~wd~~~ 359 (612)
+++. +++...++.+.+.+.+.
T Consensus 244 ~G~vllV~~~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 244 GNESVLVGARAPYAISFRSWDN 265 (334)
T ss_dssp TTEEEEEEEETTEEEEEECSST
T ss_pred CCEEEEEEcCCCCEEEEECCCC
Confidence 3566 44455555555555444
No 325
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.45 E-value=0.011 Score=52.94 Aligned_cols=224 Identities=10% Similarity=0.014 Sum_probs=111.0
Q ss_pred CCCEEEEec-C----CEEEEEeCCCCceeeE--eccCCCceEEEEECCCCCEEEEeeCc-----CeEEEeecCCCceeee
Q 007229 29 KTDTILYCN-G----RSVLIRYLDKPLHVEF--YGEHGYPVTVARYSPNGEWIASADVS-----GSVRIWGTHNGFVLKN 96 (612)
Q Consensus 29 d~~~l~~~~-~----~~i~i~~~~~~~~~~~--~~~h~~~v~~~~~s~d~~~las~~~d-----~~i~iwd~~~~~~~~~ 96 (612)
++..+++|+ + +.+..||+.+.+-... +......-.++. -++++++.|+.+ ..+.+||..+.+-...
T Consensus 15 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~ 92 (302)
T 2xn4_A 15 PKLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVY--MAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSV 92 (302)
T ss_dssp CEEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEESCBCSSSBCCCEEEEETTTTEEEEE
T ss_pred CCEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEE--ECCEEEEEeCcCCCccccceEEECCCCCceeeC
Confidence 445556655 2 4788899887653332 111111111222 277788888754 3588899887652111
Q ss_pred -eeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCc----eeeeeccCCceEEEEEEcCCCCEEEEEeecC--
Q 007229 97 -EFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGT----TVGDFDGHSRRVLSCEFKPTRPFRIATCGED-- 169 (612)
Q Consensus 97 -~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-- 169 (612)
.+.........+. -+++.++.+|.+.....-.++.++... .+..++........+.+ ++. +++.|+.+
T Consensus 93 ~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~-iyv~GG~~~~ 167 (302)
T 2xn4_A 93 ANMRDRRSTLGAAV--LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGL-LYAVGGYDVA 167 (302)
T ss_dssp CCCSSCCBSCEEEE--ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTE-EEEECCEETT
T ss_pred CCCCccccceEEEE--ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CCE-EEEEeCCCCC
Confidence 1111111112222 267777777765543333455555222 22222222111122222 343 67777653
Q ss_pred -----CeEEEEeCCCCeeeec--ccccccceEEEEECCCCCeEEEEEcC-----CcEEEEecCCCCeeeeeeccCCcccc
Q 007229 170 -----FLVNFYEGPPFKFKLS--HREHSNFVNCIRFSPDGSKLISVSSD-----RKGLIYDGKSGEKIGEFSSEDGHHGS 237 (612)
Q Consensus 170 -----~~i~~wd~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~ 237 (612)
..+.+||..+.+.... +.........+.+ +++.++.|+.+ ..+.+||+++.+....-... .....
T Consensus 168 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~-~~r~~ 244 (302)
T 2xn4_A 168 SRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMN-MCRRN 244 (302)
T ss_dssp TTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCS-SCCBS
T ss_pred CCccccEEEEEeCCCCcEEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCC-Ccccc
Confidence 3588999887654432 2211111222222 56677777654 46889998876544332111 11111
Q ss_pred EEEEEEecCCCEEEEEeCCC-----cEEEEEe
Q 007229 238 IYAVSWSPDGKKVLTVSADK-----SAKVWEI 264 (612)
Q Consensus 238 v~~i~~~~~~~~l~~~~~dg-----~i~iw~~ 264 (612)
. +++. -+++.++.|+.++ .+.+||+
T Consensus 245 ~-~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~ 274 (302)
T 2xn4_A 245 A-GVCA-VNGLLYVVGGDDGSCNLASVEYYNP 274 (302)
T ss_dssp C-EEEE-ETTEEEEECCBCSSSBCCCEEEEET
T ss_pred C-eEEE-ECCEEEEECCcCCCcccccEEEEcC
Confidence 1 1222 2677777777553 4788887
No 326
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=97.33 E-value=0.0066 Score=49.48 Aligned_cols=144 Identities=9% Similarity=-0.027 Sum_probs=80.6
Q ss_pred eEEEEEEccCCCeEEEEecCCeEEEEEccCccccc----ceeec--cccCceEEEEEcCCCcEEEEEcCCCeEEEEecCC
Q 007229 452 TVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTE----EMVLE--KHRGAITVIQYSPDVSMFASADGNREAIVWDRVS 525 (612)
Q Consensus 452 ~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~----~~~~~--~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~ 525 (612)
.++.++|+|+|.+.++ .+|.++-.+..+..... ...+- +-+. ..++.|.|+|.+.++ .||.|+-++-.+
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP~ 116 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPPQ 116 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence 4678999999987777 77877776664422100 01110 1111 478999999998888 569998887643
Q ss_pred cceeeec-----c-cccccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcc----eeeeec-ccccCeeeEEEecCce
Q 007229 526 KEVKLNN-----M-LFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASS----RITIKN-AHLGGVYGVAFMDDFN 594 (612)
Q Consensus 526 ~~~~~~~-----~-~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~----~~~~~~-~h~~~v~~~~~~~~~~ 594 (612)
.....-. + ..-=..+..|.|.|+|.+-+.. |+.++-+........ ....+. .....-+.+.|.++..
T Consensus 117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~ 194 (236)
T 1tl2_A 117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGT 194 (236)
T ss_dssp STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSC
T ss_pred CCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCc
Confidence 2221000 0 0011467999999999877776 777544333321100 011111 2222344466775555
Q ss_pred EEEccCCCe
Q 007229 595 VVSSGEDAC 603 (612)
Q Consensus 595 l~s~~~d~~ 603 (612)
|..+. ++.
T Consensus 195 l~~v~-~g~ 202 (236)
T 1tl2_A 195 LFGVQ-GGK 202 (236)
T ss_dssp EEEEE-TTE
T ss_pred EEEEe-CCe
Confidence 55555 663
No 327
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.32 E-value=0.0058 Score=55.51 Aligned_cols=102 Identities=13% Similarity=0.194 Sum_probs=72.3
Q ss_pred ceeEEEEccCCCEEEEecCCEEEEEeCCCCc------------eeeEecc------CCCceEEEEECCC---CCEEEEee
Q 007229 20 RGILISGNPKTDTILYCNGRSVLIRYLDKPL------------HVEFYGE------HGYPVTVARYSPN---GEWIASAD 78 (612)
Q Consensus 20 ~v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~------------~~~~~~~------h~~~v~~~~~s~d---~~~las~~ 78 (612)
.+..+..||+|++||..+...|.|-.+..+. ..+.+.- ...+|..+.|+|- +..|++-.
T Consensus 67 ~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLt 146 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLK 146 (452)
T ss_dssp TTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEE
T ss_pred ceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEe
Confidence 5678999999999999999999999988332 1112211 3577999999994 56888888
Q ss_pred CcCeEEEeecCCCceeeeeee---------ecCCCeEEEEECCCCCEEEEEe
Q 007229 79 VSGSVRIWGTHNGFVLKNEFK---------VLSGRIDDLQWSPDGLRIVACG 121 (612)
Q Consensus 79 ~d~~i~iwd~~~~~~~~~~~~---------~~~~~i~~~~~s~~~~~l~~~~ 121 (612)
.|+.|++||+.........+. .....|.+++|.+++-.|....
T Consensus 147 sD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~ 198 (452)
T 3pbp_A 147 EDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLN 198 (452)
T ss_dssp TTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEE
T ss_pred cCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEe
Confidence 999999999986332111221 1124688889988776555544
No 328
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=97.30 E-value=0.014 Score=47.56 Aligned_cols=97 Identities=11% Similarity=0.036 Sum_probs=65.2
Q ss_pred ceeEEEEccCCCEEEEecCCEEEEEeCCCCceeeEeccCCCc--------eEEEEECCCCCEEEEeeCcCeEEEeecCCC
Q 007229 20 RGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGYP--------VTVARYSPNGEWIASADVSGSVRIWGTHNG 91 (612)
Q Consensus 20 ~v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~~~~h~~~--------v~~~~~s~d~~~las~~~d~~i~iwd~~~~ 91 (612)
.+..++|+|+|.+.++ .++.++-.+..+.....-+. -... -.++.|.|+|.+.++ .||.|.-++-.+.
T Consensus 42 ~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~-s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~ 117 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMG-RAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQS 117 (236)
T ss_dssp TCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHH-HCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCS
T ss_pred cceeEEECCCccEEEE-eCCeEEEECCCCCCcccccc-cccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcC
Confidence 6679999999998888 77887777765533222111 1233 379999999998888 4699988876442
Q ss_pred ce---eeeeeeecC---CCeEEEEECCCCCEEEEE
Q 007229 92 FV---LKNEFKVLS---GRIDDLQWSPDGLRIVAC 120 (612)
Q Consensus 92 ~~---~~~~~~~~~---~~i~~~~~s~~~~~l~~~ 120 (612)
.. +........ ..+..+.|.|+|...++.
T Consensus 118 ~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~ 152 (236)
T 1tl2_A 118 DTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH 152 (236)
T ss_dssp TTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE
T ss_pred CCCceeccccEeccCCCCceEEEEECCCceEEEEe
Confidence 21 111011111 478999999999888777
No 329
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.30 E-value=0.067 Score=48.03 Aligned_cols=146 Identities=13% Similarity=0.056 Sum_probs=78.8
Q ss_pred CCCeEEEEecC--------CeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcC-C-----CeEEEEecCCc
Q 007229 461 DGSEAIVGGQN--------GKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADG-N-----REAIVWDRVSK 526 (612)
Q Consensus 461 ~~~~l~~~~~d--------g~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-d-----~~i~iwd~~~~ 526 (612)
++++++.|+.+ ..+.+||..+++......++.....-..+ ..++++++.|+. + ..+.+||..+.
T Consensus 98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~ 175 (315)
T 4asc_A 98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVL--SHMDLVYVIGGKGSDRKCLNKMCVYDPKKF 175 (315)
T ss_dssp TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEE--EETTEEEEECCBCTTSCBCCCEEEEETTTT
T ss_pred CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEE--EECCEEEEEeCCCCCCcccceEEEEeCCCC
Confidence 66777777743 36999999887764333333222222222 246677778776 2 46889998876
Q ss_pred ceeeec-ccccccceeEEEecCCCcEEEEeecCc-----EEEEEEccCCCcceeeeecccccCeeeEEEecCceEEEccC
Q 007229 527 EVKLNN-MLFHTARINCLAWSPSSTMVATGSIDT-----CVIIYEIGKPASSRITIKNAHLGGVYGVAFMDDFNVVSSGE 600 (612)
Q Consensus 527 ~~~~~~-~~~~~~~i~~~~~s~~~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~ 600 (612)
+-.... +......-.++. -++++++.|+.++ .+.+||..+.....+..+....... ++...+++.++.||.
T Consensus 176 ~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~~~~~l~v~GG~ 252 (315)
T 4asc_A 176 EWKELAPMQTARSLFGATV--HDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSL-SLVSLVGTLYAIGGF 252 (315)
T ss_dssp EEEECCCCSSCCBSCEEEE--ETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSC-EEEEETTEEEEEEEE
T ss_pred eEEECCCCCCchhceEEEE--ECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccce-eEEEECCEEEEECCc
Confidence 532111 111111111222 2678888887654 5888998873322222221111111 222236777777775
Q ss_pred CC--------------eEEEEEecc
Q 007229 601 DA--------------CIRVWRLAT 611 (612)
Q Consensus 601 d~--------------~i~~w~~~~ 611 (612)
++ .+.+||+++
T Consensus 253 ~~~~~~~~~~~~~~~~~v~~yd~~~ 277 (315)
T 4asc_A 253 ATLETESGELVPTELNDIWRYNEEE 277 (315)
T ss_dssp EEEECTTSCEEEEEEEEEEEEETTT
T ss_pred cccCcCCccccccccCcEEEecCCC
Confidence 42 366777765
No 330
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.25 E-value=0.11 Score=47.31 Aligned_cols=104 Identities=14% Similarity=0.109 Sum_probs=58.1
Q ss_pred CCceEEEEECCCCCEEEEeeCcCeEEEeecCCCce-eeeeee---ecCCCeEEEEECCC---CCEEEEEeCCC-C--eee
Q 007229 59 GYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFV-LKNEFK---VLSGRIDDLQWSPD---GLRIVACGDGK-G--KSF 128 (612)
Q Consensus 59 ~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~-~~~~~~---~~~~~i~~~~~s~~---~~~l~~~~~~~-~--~~~ 128 (612)
-.....++|.|||+++++ ..+|.|.+++ +++. ....+. ........++|+|+ +..|.++.... . ...
T Consensus 30 l~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~ 106 (352)
T 2ism_A 30 LEVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ 106 (352)
T ss_dssp CSCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred CCCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence 335679999999996665 4569999998 3431 111111 12357899999998 55555443321 0 012
Q ss_pred EEEEEecCC-----cee-eeec---cCCceEEEEEEcCCCCEEEEEe
Q 007229 129 VRAFMWDSG-----TTV-GDFD---GHSRRVLSCEFKPTRPFRIATC 166 (612)
Q Consensus 129 i~i~~~~~~-----~~~-~~~~---~~~~~v~~~~~~~~~~~~l~~~ 166 (612)
|..+..+.+ +.+ ..+. +.......++|.|+|. +.++-
T Consensus 107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~ 152 (352)
T 2ism_A 107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM-LYVTT 152 (352)
T ss_dssp EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC-EEEEC
T ss_pred EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC-EEEEE
Confidence 333443332 111 2233 1112346899999997 45553
No 331
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=97.21 E-value=0.1 Score=46.13 Aligned_cols=217 Identities=6% Similarity=-0.016 Sum_probs=111.9
Q ss_pred ECCCCCEEEEee--CcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCC-----------eeeEEEEE
Q 007229 67 YSPNGEWIASAD--VSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKG-----------KSFVRAFM 133 (612)
Q Consensus 67 ~s~d~~~las~~--~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~-----------~~~i~i~~ 133 (612)
|+++|.+|.... .++.|...+..... .. .+... .+--++++|.+|..+..... ...|....
T Consensus 21 ~~~~g~~iy~~n~~d~~~ly~~~~dg~~-~~-~l~~~----~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~ 94 (302)
T 3s25_A 21 FCESDGEVFFSNTNDNGRLYAMNIDGSN-IH-KLSND----TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIK 94 (302)
T ss_dssp EEEETTEEEEEEGGGTTEEEEEETTSCS-CE-EEEEE----EEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEE
T ss_pred EEEeCCEEEEEeCCCCceEEEEcCCCCC-CE-EccCC----ceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEe
Confidence 345677777654 34556666655443 22 23222 13456789999998876531 11233333
Q ss_pred ecCCceeeeeccCCceEEEEEEcCCCCEEEEEe---ecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEc
Q 007229 134 WDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATC---GEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSS 210 (612)
Q Consensus 134 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~---~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 210 (612)
.+.++ ...+.... ...|+++++++..+- .....|..-++.... ...+..+.. .+++|+++.|+-.+.
T Consensus 95 ~dg~~-~~~l~~~~----~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt~~~~----~~~~~~g~~iy~t~~ 164 (302)
T 3s25_A 95 RNGHG-STVLDPDP----CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE-KKKIKNHYL----FTCNTSDRYFYYNNP 164 (302)
T ss_dssp TTSCC-CEEEECSC----EEEEEEETTEEEEEEESSSSCEEEEEEETTSCC-CEEEESSCC----CCSEEETTEEEEECT
T ss_pred CCCCc-ceEeecCC----ccEEEEeCCEEEEEeecCCCCceEEEEECCCCC-eEEEeCCCc----eEeeEECCEEEEEeC
Confidence 33332 22222221 236778888644444 234556666665433 233333322 456788988887665
Q ss_pred -CCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceee
Q 007229 211 -DRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDML 289 (612)
Q Consensus 211 -dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (612)
...|.+-++..+.....+ .+ ... ..+.|++.+|+-....+.-+|+.+..++...+.+. .. ..
T Consensus 165 g~~~Iy~~~l~g~~~~~l~---~~---~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~~Lt---~~-------~~ 227 (302)
T 3s25_A 165 KNGQLYRYDTASQSEALFY---DC---NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNPVVLT---EA-------NI 227 (302)
T ss_dssp TTCCEEEEETTTTEEEEEE---CS---CEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCCEECS---CS-------CE
T ss_pred CCceEEEEECCCCCEEEEe---CC---Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCeEEEe---CC-------Cc
Confidence 567888887665543333 11 122 24668898888776544345555543333322221 11 11
Q ss_pred eeeeccCCEEEEEEc--CCEEEEEEcCCC
Q 007229 290 VGCLWQNDHLITVSL--GGIISIFSASNL 316 (612)
Q Consensus 290 ~~~~~~~~~~~~~~~--~~~i~~~~~~~~ 316 (612)
..+.+.++.++.... .+.|...++...
T Consensus 228 ~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~ 256 (302)
T 3s25_A 228 EHYNVYGSLIFYQRGGDNPALCVVKNDGT 256 (302)
T ss_dssp EEEEEETTEEEEEECSSSCEEEEEETTSC
T ss_pred ceEEECCCEEEEEECCCCcEEEEEECCCC
Confidence 224445666665533 345555555443
No 332
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=97.20 E-value=0.085 Score=47.43 Aligned_cols=146 Identities=11% Similarity=0.083 Sum_probs=77.5
Q ss_pred CCCeEEEEecC-------CeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcC------CCeEEEEecCCcc
Q 007229 461 DGSEAIVGGQN-------GKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADG------NREAIVWDRVSKE 527 (612)
Q Consensus 461 ~~~~l~~~~~d-------g~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~------d~~i~iwd~~~~~ 527 (612)
++++++.|+.+ ..+.+||..+.+......++.....-..+. .++++++.|+. -..+.+||+.+.+
T Consensus 109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~ 186 (318)
T 2woz_A 109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS--HNGMIYCLGGKTDDKKCTNRVFIYNPKKGD 186 (318)
T ss_dssp TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE--ETTEEEEECCEESSSCBCCCEEEEETTTTE
T ss_pred CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE--ECCEEEEEcCCCCCCCccceEEEEcCCCCE
Confidence 56677777754 258889998877643332222111112222 46777777764 2358899998875
Q ss_pred eeeec-ccccccceeEEEecCCCcEEEEeecC-----cEEEEEEccCCCcceeeeecccccCeeeEEEecCceEEEccCC
Q 007229 528 VKLNN-MLFHTARINCLAWSPSSTMVATGSID-----TCVIIYEIGKPASSRITIKNAHLGGVYGVAFMDDFNVVSSGED 601 (612)
Q Consensus 528 ~~~~~-~~~~~~~i~~~~~s~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d 601 (612)
-.... .......-.++. -++++++.|+.+ ..+.+||..+.....+..+...... .++...+++.++.||.+
T Consensus 187 W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~~~~~i~v~GG~~ 263 (318)
T 2woz_A 187 WKDLAPMKTPRSMFGVAI--HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSS-ISLVSLAGSLYAIGGFA 263 (318)
T ss_dssp EEEECCCSSCCBSCEEEE--ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBS-CEEEEETTEEEEECCBC
T ss_pred EEECCCCCCCcccceEEE--ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccc-eEEEEECCEEEEECCee
Confidence 32111 111111112222 267777777643 3577899887432333222211111 12222367777777754
Q ss_pred --------------CeEEEEEecc
Q 007229 602 --------------ACIRVWRLAT 611 (612)
Q Consensus 602 --------------~~i~~w~~~~ 611 (612)
..+.+||+++
T Consensus 264 ~~~~~~~~~~~~~~~~v~~yd~~~ 287 (318)
T 2woz_A 264 MIQLESKEFAPTEVNDIWKYEDDK 287 (318)
T ss_dssp CBC----CCBCCBCCCEEEEETTT
T ss_pred ccCCCCceeccceeeeEEEEeCCC
Confidence 3577788765
No 333
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.12 E-value=0.061 Score=57.13 Aligned_cols=268 Identities=12% Similarity=0.087 Sum_probs=151.3
Q ss_pred CCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeee
Q 007229 211 DRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLV 290 (612)
Q Consensus 211 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (612)
..+|.|.|+.++..+...+ -..-+.-.+|..+.++.- ...++.++|+ ++...++.+.... .+.
T Consensus 47 ~~~vvIidl~~~~~~~rrp------i~AdsAIMnP~~~iiALr-ag~~lQiFnl----~~k~klks~~~~e------~Vv 109 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRRP------ISADSAIMNPASKVIALK-AGKTLQIFNI----EMKSKMKAHTMTD------DVT 109 (1630)
T ss_pred CceEEEEECCCCCCccccc------ccchhhccCCCcceEEEe-cCCeEEEeeh----HHhhhhcccccCC------Cce
Confidence 3478888888866553221 111234457777766554 3678999999 8888888877654 455
Q ss_pred eeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcc----cceeEEEEEecCCcEEEEEe-------cCCcEEEEEcCC
Q 007229 291 GCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHV----KNVSTLTALKISQQTILSSS-------YDGAIIKWIRGV 359 (612)
Q Consensus 291 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~l~~~~-------~dg~i~~wd~~~ 359 (612)
-..|-+...+.--.+..|.-|++.....+...+.-|. ..|..-.. +.+.++++..+ -.|.+.+|..+.
T Consensus 110 fWkWis~~~l~lVT~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~-d~~~kW~~l~gi~~~~~~v~G~mQLyS~er 188 (1630)
T 1xi4_A 110 FWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRT-DAKQKWLLLTGISAQQNRVVGAMQLYSVDR 188 (1630)
T ss_pred EEEecCCCeeEEEcCCeEEEeccCCCCccHHHHhcchhcccCeeEEeee-CCCCCeEEEEeeccCCCcccceeeeeeccc
Confidence 5566677777777788999999977666666655553 23333332 33366665422 357889998887
Q ss_pred ceeeeeceecccceEEEEeec----cEEEEec----CCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEe
Q 007229 360 GYSSKLEKKYDARIKCLAAVE----EVIFTAG----FDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVST 431 (612)
Q Consensus 360 ~~~~~~~~~~~~~i~~~~~~~----~~l~~~~----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (612)
+....+.+ |......+..++ ..+++-. ..+++++.++....... .........+.+.|+.
T Consensus 189 ~~sQ~ieg-ha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~---~~f~kk~~~~~~~~~~-------- 256 (1630)
T 1xi4_A 189 KVSQPIEG-HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGN---QPFPKKAVDVFFPPEA-------- 256 (1630)
T ss_pred ccchhhhH-hHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCC---CCCccccccccCCccc--------
Confidence 66554433 333333322211 1122111 12588888875541110 1111112222222211
Q ss_pred eccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEE
Q 007229 432 ESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFAS 511 (612)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 511 (612)
...-..++..|+....+..-+.-|.+++||+.++.......+. ..+|...+......=++.
T Consensus 257 -----------------~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris--~~~iF~~~~~~~~~g~~~ 317 (1630)
T 1xi4_A 257 -----------------QNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRIS--GETIFVTAPHEATAGIIG 317 (1630)
T ss_pred -----------------ccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhcccc--CCceEEeccCCCCCceEE
Confidence 1123567888998889999999999999999999874333332 233333333332222333
Q ss_pred EcCCCeEEEEecCCcc
Q 007229 512 ADGNREAIVWDRVSKE 527 (612)
Q Consensus 512 ~~~d~~i~iwd~~~~~ 527 (612)
....|.|.--.+....
T Consensus 318 vnr~G~vl~v~v~~~~ 333 (1630)
T 1xi4_A 318 VNRKGQVLSVCVEEEN 333 (1630)
T ss_pred EcCCceEEEEEEccch
Confidence 3355555555444443
No 334
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=97.10 E-value=0.039 Score=50.73 Aligned_cols=107 Identities=5% Similarity=0.014 Sum_probs=51.0
Q ss_pred CCCeEEEEec------CCeEEEEEc--cCcccccceeeccccCceEEEEEcCCCcEEEEEcCC-----------------
Q 007229 461 DGSEAIVGGQ------NGKLHIYSI--SGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGN----------------- 515 (612)
Q Consensus 461 ~~~~l~~~~~------dg~v~i~d~--~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d----------------- 515 (612)
++++++.|+. ...+..||+ .+.+......+..........+...++++++.|+.+
T Consensus 200 ~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~ 279 (357)
T 2uvk_A 200 GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHE 279 (357)
T ss_dssp TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTT
T ss_pred CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEEECCEEEEEcCccccCCcccccccceeccc
Confidence 5566666653 235777877 555543332222211111211233467777777632
Q ss_pred -----CeEEEEecCCcceee-ecccccccceeEEEecCCCcEEEEeecCc------EEEEEEccCC
Q 007229 516 -----REAIVWDRVSKEVKL-NNMLFHTARINCLAWSPSSTMVATGSIDT------CVIIYEIGKP 569 (612)
Q Consensus 516 -----~~i~iwd~~~~~~~~-~~~~~~~~~i~~~~~s~~~~~l~s~~~d~------~i~iwd~~~~ 569 (612)
..+.+||+.+.+-.. ..+...... ..+...++++++.|+.++ .+.+++++++
T Consensus 280 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~--~~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~ 343 (357)
T 2uvk_A 280 GLKKSYSTDIHLWHNGKWDKSGELSQGRAY--GVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDN 343 (357)
T ss_dssp TCCCEECCEEEECC---CEEEEECSSCCBS--SEEEEETTEEEEEEEECGGGCEEEEEEEEEC-CC
T ss_pred cccceeeEEEEecCCCceeeCCCCCCCccc--ceeEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCc
Confidence 257789988765321 111111111 222334788888888653 4666688773
No 335
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.08 E-value=0.17 Score=46.19 Aligned_cols=187 Identities=11% Similarity=0.053 Sum_probs=100.3
Q ss_pred CceeEEEEccC---CCEEEEec-C--------CEEEEEeCCCC--c---e--e-eEec-cCCCceEEEEECCCCCEEEEe
Q 007229 19 GRGILISGNPK---TDTILYCN-G--------RSVLIRYLDKP--L---H--V-EFYG-EHGYPVTVARYSPNGEWIASA 77 (612)
Q Consensus 19 ~~v~~~~~s~d---~~~l~~~~-~--------~~i~i~~~~~~--~---~--~-~~~~-~h~~~v~~~~~s~d~~~las~ 77 (612)
+....|+++|| +..|.++. . +.|..++.... . . + ..+. +..+....++|.|||.+.++.
T Consensus 73 ~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~ 152 (354)
T 3a9g_A 73 AGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITT 152 (354)
T ss_dssp CSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEEC
T ss_pred CceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEE
Confidence 46789999998 45554432 2 67888887654 1 1 1 1122 112234679999999877775
Q ss_pred eC-------------cCeEEEeecCCCce------eeeeeeecCCCeEEEEECC-CCCEEEEEeCCCCeeeEEEEEecCC
Q 007229 78 DV-------------SGSVRIWGTHNGFV------LKNEFKVLSGRIDDLQWSP-DGLRIVACGDGKGKSFVRAFMWDSG 137 (612)
Q Consensus 78 ~~-------------d~~i~iwd~~~~~~------~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~~~~~~~i~i~~~~~~ 137 (612)
+. .|.|.-.+....-. ....+..--.....++|.| +|+.+++-...... -.+.....+
T Consensus 153 G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~--dei~~i~~G 230 (354)
T 3a9g_A 153 GDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGH--DEVNIILKG 230 (354)
T ss_dssp CCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSC--CEEEEECTT
T ss_pred CCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCC--cEEEEecCC
Confidence 42 24565555543200 0011111123456899999 56554443222111 123322322
Q ss_pred c------------------eeeeeccCCceEEEEEEc-------CCCCEEEEEeecCCeEEEEeCCCC-eee--ec-ccc
Q 007229 138 T------------------TVGDFDGHSRRVLSCEFK-------PTRPFRIATCGEDFLVNFYEGPPF-KFK--LS-HRE 188 (612)
Q Consensus 138 ~------------------~~~~~~~~~~~v~~~~~~-------~~~~~~l~~~~~d~~i~~wd~~~~-~~~--~~-~~~ 188 (612)
. ++..+.........++|. .++. ++++....+.|...++... +.. .. +.+
T Consensus 231 ~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~-l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~ 309 (354)
T 3a9g_A 231 GNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGW-LLIACLRGSMLAAVNFGDNMEVRKISTFFKN 309 (354)
T ss_dssp CBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTE-EEEEETTTTEEEEEEECGGGCEEEEEEECTT
T ss_pred CcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCc-EEEEEcCCCEEEEEEECCCCcccceeeeccC
Confidence 1 222331123456778883 4554 5666666778888887653 221 12 222
Q ss_pred cccceEEEEECCCCCeEEEE
Q 007229 189 HSNFVNCIRFSPDGSKLISV 208 (612)
Q Consensus 189 ~~~~v~~~~~s~~~~~l~~~ 208 (612)
....+..+++.|||.+.++.
T Consensus 310 ~~~rp~~v~~~pDG~lyv~~ 329 (354)
T 3a9g_A 310 VFGRLRDVVIDDDGGILIST 329 (354)
T ss_dssp TSCCEEEEEECTTSCEEEEE
T ss_pred CCCCeeEEEECCCCcEEEEE
Confidence 34578899999999755544
No 336
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.03 E-value=0.065 Score=56.92 Aligned_cols=235 Identities=11% Similarity=0.060 Sum_probs=143.1
Q ss_pred EEEEccCCCEEEEecCCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeec-
Q 007229 23 LISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVL- 101 (612)
Q Consensus 23 ~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~- 101 (612)
+.-.+|..+.||.-.+..+.|+|+++.+.+....- ..+|.-=.|-.+. .|+..+ +..|.-|++.......+.+..|
T Consensus 70 sAIMnP~~~iiALrag~~lQiFnl~~k~klks~~~-~e~VvfWkWis~~-~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~ 146 (1630)
T 1xi4_A 70 SAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHS 146 (1630)
T ss_pred hhccCCCcceEEEecCCeEEEeehHHhhhhccccc-CCCceEEEecCCC-eeEEEc-CCeEEEeccCCCCccHHHHhcch
Confidence 45568889999998899999999998777665443 3456555665554 344443 3479999997654444455555
Q ss_pred ---CCCeEEEEECCCCCEEEEEeCCC----CeeeEEEEEecCCceeeeeccCCceEEEEEEc--CCCCEEEEEeec---C
Q 007229 102 ---SGRIDDLQWSPDGLRIVACGDGK----GKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFK--PTRPFRIATCGE---D 169 (612)
Q Consensus 102 ---~~~i~~~~~s~~~~~l~~~~~~~----~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~l~~~~~---d 169 (612)
...|..-.-+++.++++..|-.. ....++++..+ .+.-+.+.||......+... +....+++.+.. .
T Consensus 147 ~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~e-r~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g 225 (1630)
T 1xi4_A 147 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD-RKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAG 225 (1630)
T ss_pred hcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecc-cccchhhhHhHhhhheeccCCCCCCceEEEEEEecCCC
Confidence 45788888899999998776421 11123344333 22233456665544444332 111212332222 2
Q ss_pred CeEEEEeCCCC---eeeec-------cc--ccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCcccc
Q 007229 170 FLVNFYEGPPF---KFKLS-------HR--EHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGS 237 (612)
Q Consensus 170 ~~i~~wd~~~~---~~~~~-------~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 237 (612)
+.+.+-++... ..... +. ...+-..+|..++.-..++..+.-|.+.++|++++.++..-. -...+
T Consensus 226 ~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~r---is~~~ 302 (1630)
T 1xi4_A 226 GKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNR---ISGET 302 (1630)
T ss_pred ceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhcc---ccCCc
Confidence 67888876432 11110 11 112335567778877788888999999999999999887763 34455
Q ss_pred EEEEEEecCCCEEEEEeCCCcEEEEEe
Q 007229 238 IYAVSWSPDGKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 238 v~~i~~~~~~~~l~~~~~dg~i~iw~~ 264 (612)
|...+..+...-++.....|.|.--.+
T Consensus 303 iF~~~~~~~~~g~~~vnr~G~vl~v~v 329 (1630)
T 1xi4_A 303 IFVTAPHEATAGIIGVNRKGQVLSVCV 329 (1630)
T ss_pred eEEeccCCCCCceEEEcCCceEEEEEE
Confidence 555555544344555567777766666
No 337
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.86 E-value=0.067 Score=49.09 Aligned_cols=94 Identities=11% Similarity=0.040 Sum_probs=48.1
Q ss_pred cCCCEEEEec--CCEEEEEeCCC--Cceee--Eec-cCCCceEEEEECCCCCEEEEeeC-c---------CeEEEeecCC
Q 007229 28 PKTDTILYCN--GRSVLIRYLDK--PLHVE--FYG-EHGYPVTVARYSPNGEWIASADV-S---------GSVRIWGTHN 90 (612)
Q Consensus 28 ~d~~~l~~~~--~~~i~i~~~~~--~~~~~--~~~-~h~~~v~~~~~s~d~~~las~~~-d---------~~i~iwd~~~ 90 (612)
-+++.+++|+ ++.+.++|+.+ .+-.. .+. .....-.++. -++++++.|+. + ..+.+||..+
T Consensus 18 ~~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~ 95 (357)
T 2uvk_A 18 DNDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAF--IDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKT 95 (357)
T ss_dssp ETTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEE--ETTEEEEECCEEECTTSCEEECCCEEEEETTT
T ss_pred ECCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEE--ECCEEEEEcCCCCCCCccceeeccEEEEeCCC
Confidence 3777777776 57899999874 22211 111 1111112222 26778888776 2 3688999988
Q ss_pred CceeeeeeeecCCCeEEEEECCCCCEEEEEeCC
Q 007229 91 GFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDG 123 (612)
Q Consensus 91 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~ 123 (612)
.+-...............+...+++.++.+|.+
T Consensus 96 ~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~ 128 (357)
T 2uvk_A 96 NSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVN 128 (357)
T ss_dssp TEEEECSCCCSSCCSSEEEEEETTEEEEEECCC
T ss_pred CcEEECCCCCCcccccceEEEECCEEEEEeCcC
Confidence 752111111101111111222577777777754
No 338
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=96.54 E-value=0.24 Score=50.01 Aligned_cols=109 Identities=14% Similarity=0.285 Sum_probs=64.1
Q ss_pred cCCCeEEEEecCC--eEEEEEccCccccccee---eccccCceEEEEEcCC-CcEEEEEcC--C-----CeEEEEecCCc
Q 007229 460 PDGSEAIVGGQNG--KLHIYSISGNTLTEEMV---LEKHRGAITVIQYSPD-VSMFASADG--N-----REAIVWDRVSK 526 (612)
Q Consensus 460 ~~~~~l~~~~~dg--~v~i~d~~~~~~~~~~~---~~~~~~~i~~~~~s~~-~~~l~~~~~--d-----~~i~iwd~~~~ 526 (612)
.++++++.|+.++ .+.+||..++....... +........++.+..+ +++++.|+. + ..+.+||+.+.
T Consensus 499 ~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~ 578 (695)
T 2zwa_A 499 PDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAE 578 (695)
T ss_dssp TTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTT
T ss_pred cCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCC
Confidence 4788888887655 69999998887643332 2222222344555555 777788775 2 46889999887
Q ss_pred ce----eeeccc----ccccceeEEEecCCCcEEEEeecC--------cEEEEEEccCC
Q 007229 527 EV----KLNNML----FHTARINCLAWSPSSTMVATGSID--------TCVIIYEIGKP 569 (612)
Q Consensus 527 ~~----~~~~~~----~~~~~i~~~~~s~~~~~l~s~~~d--------~~i~iwd~~~~ 569 (612)
.- ...... .....- ++....++++++.|+.+ ..+.+||..+.
T Consensus 579 ~w~~~~~W~~~~~~p~~~R~~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~ 636 (695)
T 2zwa_A 579 NATEPITVIKKLQHPLFQRYGS-QIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSE 636 (695)
T ss_dssp CSSCCEEEEEEEECGGGCCBSC-EEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTT
T ss_pred ccccceEEEEcCCCCCCCcccc-eEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCC
Confidence 61 001111 011111 22233337888888743 45899999873
No 339
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=96.49 E-value=0.59 Score=44.17 Aligned_cols=105 Identities=14% Similarity=0.061 Sum_probs=62.6
Q ss_pred ceeEEEEccCCC--EEEEecCCEEEEEeCCCCc---eeeEec---------cCCCceEEEEECCC----CCEEEEeeC--
Q 007229 20 RGILISGNPKTD--TILYCNGRSVLIRYLDKPL---HVEFYG---------EHGYPVTVARYSPN----GEWIASADV-- 79 (612)
Q Consensus 20 ~v~~~~~s~d~~--~l~~~~~~~i~i~~~~~~~---~~~~~~---------~h~~~v~~~~~s~d----~~~las~~~-- 79 (612)
....|+|.|||. ++++-..|.|++++..... .+..+. +.......|+|+|+ +.+.++-+.
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~ 94 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ 94 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence 567899999996 6666668999999754321 111111 12456789999996 444443221
Q ss_pred c----------CeEEEeecCCC---------ceeeeeee--ecCCCeEEEEECCCCCEEEEEeCCC
Q 007229 80 S----------GSVRIWGTHNG---------FVLKNEFK--VLSGRIDDLQWSPDGLRIVACGDGK 124 (612)
Q Consensus 80 d----------~~i~iwd~~~~---------~~~~~~~~--~~~~~i~~~~~s~~~~~l~~~~~~~ 124 (612)
+ ..|.-|.+..+ ..+...+. .....-..|+|.|||.+.++.++..
T Consensus 95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~ 160 (463)
T 2wg3_C 95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGM 160 (463)
T ss_dssp CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTT
T ss_pred CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCC
Confidence 1 14555665421 11111222 1123467899999999888888754
No 340
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.44 E-value=0.17 Score=47.93 Aligned_cols=105 Identities=10% Similarity=0.057 Sum_probs=60.9
Q ss_pred eEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeecc------ccCceEEEEEcCC---CcEEEEEc-C-------
Q 007229 452 TVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEK------HRGAITVIQYSPD---VSMFASAD-G------- 514 (612)
Q Consensus 452 ~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~------~~~~i~~~~~s~~---~~~l~~~~-~------- 514 (612)
....++|.|+|+++++-...+.|++++..++.......+.. ..+....|+|+|+ +.+|..+. .
T Consensus 28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~ 107 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTD 107 (454)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--
T ss_pred CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCc
Confidence 46799999999877765444578888865554422222221 2355779999995 44444332 2
Q ss_pred -----CCeEEEEecCCc-------ceeeeccc-ccccceeEEEecCCCcEEEEee
Q 007229 515 -----NREAIVWDRVSK-------EVKLNNML-FHTARINCLAWSPSSTMVATGS 556 (612)
Q Consensus 515 -----d~~i~iwd~~~~-------~~~~~~~~-~~~~~i~~~~~s~~~~~l~s~~ 556 (612)
...|.-|++... +.+...+. ........|+|.|||.+.++.+
T Consensus 108 ~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 108 KELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred cccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 234555655322 12222121 1122468899999998776654
No 341
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=96.37 E-value=0.61 Score=44.22 Aligned_cols=191 Identities=12% Similarity=0.086 Sum_probs=119.1
Q ss_pred cCCCEEEEec--CCEEEEEeCCCCceeeEec-cCCCceEEEEEC--CCCCEEEEeeC-------cCeE---------EEe
Q 007229 28 PKTDTILYCN--GRSVLIRYLDKPLHVEFYG-EHGYPVTVARYS--PNGEWIASADV-------SGSV---------RIW 86 (612)
Q Consensus 28 ~d~~~l~~~~--~~~i~i~~~~~~~~~~~~~-~h~~~v~~~~~s--~d~~~las~~~-------d~~i---------~iw 86 (612)
.||+||..-. +..|-..+++.-++-+.++ .....+..++|- |+-.|++.++. ||.. .+|
T Consensus 140 yDGrylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f 219 (638)
T 3sbq_A 140 YDGKYLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMY 219 (638)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEE
T ss_pred eeeEEEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEE
Confidence 4899999987 5788888888877766544 456788889987 68888887763 3331 111
Q ss_pred ---ecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCC------------CeeeEEEEEec-------CCc------
Q 007229 87 ---GTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGK------------GKSFVRAFMWD-------SGT------ 138 (612)
Q Consensus 87 ---d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~------------~~~~i~i~~~~-------~~~------ 138 (612)
|..+.+ +.-+.. -.+....+...++|++.++.+.+. ...++.+++|. .|+
T Consensus 220 ~~iD~~tm~-v~~Qv~-v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g 297 (638)
T 3sbq_A 220 NAIDAETME-MAFQVI-VDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGD 297 (638)
T ss_dssp EEEETTTCS-EEEEEE-ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTT
T ss_pred EEEcCCccE-EEEEEE-cCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECC
Confidence 111111 111111 123344556688899988877543 22367788876 111
Q ss_pred -eeeeeccCC---------------ceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCee-------------eeccccc
Q 007229 139 -TVGDFDGHS---------------RRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKF-------------KLSHREH 189 (612)
Q Consensus 139 -~~~~~~~~~---------------~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~-------------~~~~~~~ 189 (612)
.+..+.+.. .....+.++|||+|+++.|-.+.++.++|...... ..... -
T Consensus 298 ~gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~ 376 (638)
T 3sbq_A 298 SKTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-L 376 (638)
T ss_dssp CCCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-C
T ss_pred CCeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-C
Confidence 122232211 12235788999999999999999999999764211 11111 2
Q ss_pred ccceEEEEECCCCCeEEEEEcCCcEEEEecCC
Q 007229 190 SNFVNCIRFSPDGSKLISVSSDRKGLIYDGKS 221 (612)
Q Consensus 190 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~ 221 (612)
.-.....+|.++|+-..+.--|..|.-|++..
T Consensus 377 GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~~ 408 (638)
T 3sbq_A 377 GLGPLHTTFDGRGNAYTTLFIDSQVVKWNMEE 408 (638)
T ss_dssp CSCEEEEEECSSSEEEEEETTTTEEEEEEHHH
T ss_pred CCcccEEEECCCCceEeeeeecceEEEEeccH
Confidence 23567789999994444445699999999875
No 342
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=96.34 E-value=0.34 Score=45.90 Aligned_cols=222 Identities=12% Similarity=-0.004 Sum_probs=126.1
Q ss_pred CCEEEEEeCCCCceeeEecc-------------------------CCCceE--EEEECC---CCCEEEEee-CcCeEEEe
Q 007229 38 GRSVLIRYLDKPLHVEFYGE-------------------------HGYPVT--VARYSP---NGEWIASAD-VSGSVRIW 86 (612)
Q Consensus 38 ~~~i~i~~~~~~~~~~~~~~-------------------------h~~~v~--~~~~s~---d~~~las~~-~d~~i~iw 86 (612)
.|.|+|+-+.+++.++.+.- ..+... .+.+.. ||+||..-. .+..|..-
T Consensus 79 sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdkan~RvAri 158 (638)
T 3sbq_A 79 QGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKANSRVARI 158 (638)
T ss_dssp GCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETTTTEEEEE
T ss_pred CceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCCCcceEEE
Confidence 58999999998887765421 011122 233332 788888876 45678888
Q ss_pred ecCCCceeeeeeeecCCCeEEEEEC--CCCCEEEEEeCCCC--------------eeeEEEE---EecCCceeeeeccCC
Q 007229 87 GTHNGFVLKNEFKVLSGRIDDLQWS--PDGLRIVACGDGKG--------------KSFVRAF---MWDSGTTVGDFDGHS 147 (612)
Q Consensus 87 d~~~~~~~~~~~~~~~~~i~~~~~s--~~~~~l~~~~~~~~--------------~~~i~i~---~~~~~~~~~~~~~~~ 147 (612)
++..-++-...-......+..++|- |+..|++..++... ..+ .++ +-++.+....+.- .
T Consensus 159 ~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y-~~f~~iD~~tm~v~~Qv~v-~ 236 (638)
T 3sbq_A 159 RLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSY-TMYNAIDAETMEMAFQVIV-D 236 (638)
T ss_dssp ETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEE-EEEEEEETTTCSEEEEEEE-S
T ss_pred ECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhc-eEEEEEcCCccEEEEEEEc-C
Confidence 8887775332333456788899987 78889888876430 001 010 0011111111100 1
Q ss_pred ceEEEEEEcCCCCEEEEEeec--------------CCeEEEEe-------------------------CCC----Ceeee
Q 007229 148 RRVLSCEFKPTRPFRIATCGE--------------DFLVNFYE-------------------------GPP----FKFKL 184 (612)
Q Consensus 148 ~~v~~~~~~~~~~~~l~~~~~--------------d~~i~~wd-------------------------~~~----~~~~~ 184 (612)
.....+...+++.+.+.++.. .-.+.++| .+. +....
T Consensus 237 gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~~~~~~~~~~ 316 (638)
T 3sbq_A 237 GNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRKKDGKDSKFT 316 (638)
T ss_dssp SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSCBTTBCCSSE
T ss_pred CChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEccccccccCCceE
Confidence 112223446677765555421 11344443 222 11111
Q ss_pred cccccccceEEEEECCCCCeEEEEEc-CCcEEEEecCCC------Ce-------eeeeeccCCccccEEEEEEecCCCEE
Q 007229 185 SHREHSNFVNCIRFSPDGSKLISVSS-DRKGLIYDGKSG------EK-------IGEFSSEDGHHGSIYAVSWSPDGKKV 250 (612)
Q Consensus 185 ~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~------~~-------~~~~~~~~~~~~~v~~i~~~~~~~~l 250 (612)
.+-.-......+.++|||++++.++. +.++.++|++.- +. ..+. .-.-.....+|.++|.-.
T Consensus 317 ~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~----e~GlGPlHt~Fd~~G~aY 392 (638)
T 3sbq_A 317 RYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEP----ELGLGPLHTTFDGRGNAY 392 (638)
T ss_dssp EEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECC----BCCSCEEEEEECSSSEEE
T ss_pred EEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeec----cCCCcccEEEECCCCceE
Confidence 11111233557889999999987765 788999998742 11 1222 234567788999999655
Q ss_pred EEEeCCCcEEEEEee
Q 007229 251 LTVSADKSAKVWEIL 265 (612)
Q Consensus 251 ~~~~~dg~i~iw~~~ 265 (612)
.+.--|..|.-|++.
T Consensus 393 TtlfidSqvvkWni~ 407 (638)
T 3sbq_A 393 TTLFIDSQVVKWNME 407 (638)
T ss_dssp EEETTTTEEEEEEHH
T ss_pred eeeeecceEEEEecc
Confidence 555679999999993
No 343
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.32 E-value=0.55 Score=42.02 Aligned_cols=215 Identities=10% Similarity=-0.065 Sum_probs=102.0
Q ss_pred EEEEecCCEEEEEeCCCCceeeE-eccCCCceEEEEECCCCCEEEEeeC----cC-------eEEEeecCCCceeee-ee
Q 007229 32 TILYCNGRSVLIRYLDKPLHVEF-YGEHGYPVTVARYSPNGEWIASADV----SG-------SVRIWGTHNGFVLKN-EF 98 (612)
Q Consensus 32 ~l~~~~~~~i~i~~~~~~~~~~~-~~~h~~~v~~~~~s~d~~~las~~~----d~-------~i~iwd~~~~~~~~~-~~ 98 (612)
.|+..++..+..||..+.+-... +......-.+.+...++++++.|+. ++ .+.++|..+.+-... .+
T Consensus 17 ~i~~~GG~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~ 96 (318)
T 2woz_A 17 LILLVNDTAAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPL 96 (318)
T ss_dssp EEEEECSSEEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCB
T ss_pred hhhhccccceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCC
Confidence 34444455689999988764331 2111222334445567888888873 12 277788877652111 11
Q ss_pred eecCCCeEEEEECCCCCEEEEEeCC--CCeeeEEEEEecCCc----eeeeeccCCceEEEEEEcCCCCEEEEEeecC---
Q 007229 99 KVLSGRIDDLQWSPDGLRIVACGDG--KGKSFVRAFMWDSGT----TVGDFDGHSRRVLSCEFKPTRPFRIATCGED--- 169 (612)
Q Consensus 99 ~~~~~~i~~~~~s~~~~~l~~~~~~--~~~~~i~i~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--- 169 (612)
...........+ +++.++.+|.+ .....-.++.++... .+..++.....- +++. .++. +++.|+.+
T Consensus 97 p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~-~~~~-iyv~GG~~~~~ 171 (318)
T 2woz_A 97 PSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGH-NVIS-HNGM-IYCLGGKTDDK 171 (318)
T ss_dssp SSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESC-EEEE-ETTE-EEEECCEESSS
T ss_pred CccccccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCccccc-EEEE-ECCE-EEEEcCCCCCC
Confidence 111111122222 66777777753 222233455555322 121222111111 1122 3444 67777642
Q ss_pred ---CeEEEEeCCCCeeeec--ccccccceEEEEECCCCCeEEEEEcC-----CcEEEEecCCCCeeeeeeccCCccccEE
Q 007229 170 ---FLVNFYEGPPFKFKLS--HREHSNFVNCIRFSPDGSKLISVSSD-----RKGLIYDGKSGEKIGEFSSEDGHHGSIY 239 (612)
Q Consensus 170 ---~~i~~wd~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~v~ 239 (612)
..+.+||..+.+-... +........++.+ +++.++.|+.+ ..+.+||+++.+....-..+ ......
T Consensus 172 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p-~~r~~~- 247 (318)
T 2woz_A 172 KCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFP-QERSSI- 247 (318)
T ss_dssp CBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCS-SCCBSC-
T ss_pred CccceEEEEcCCCCEEEECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCC-Ccccce-
Confidence 3588999887654332 2211111122222 56677777653 34778998877654332111 111111
Q ss_pred EEEEecCCCEEEEEeCC
Q 007229 240 AVSWSPDGKKVLTVSAD 256 (612)
Q Consensus 240 ~i~~~~~~~~l~~~~~d 256 (612)
+++. -+++.++.|+.+
T Consensus 248 ~~~~-~~~~i~v~GG~~ 263 (318)
T 2woz_A 248 SLVS-LAGSLYAIGGFA 263 (318)
T ss_dssp EEEE-ETTEEEEECCBC
T ss_pred EEEE-ECCEEEEECCee
Confidence 2222 256777776653
No 344
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=96.27 E-value=0.57 Score=47.32 Aligned_cols=149 Identities=11% Similarity=0.125 Sum_probs=84.0
Q ss_pred CCCeEEEEecCC------eEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCC--eEEEEecCCcceeeec
Q 007229 461 DGSEAIVGGQNG------KLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNR--EAIVWDRVSKEVKLNN 532 (612)
Q Consensus 461 ~~~~l~~~~~dg------~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~--~i~iwd~~~~~~~~~~ 532 (612)
++++++.|+.++ .+.+||..+.+......+......-. ++.-.++++++.|+.++ .+.+||..+..-....
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~-~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~ 529 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHS-ACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVT 529 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCE-EEECTTSCEEEECCBCSSCSEEEEETTTTEEEECC
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccce-EEEEcCCEEEEECCCCCCCCEEEEECCCCceEEcc
Confidence 677777777543 58899998877643433332222222 23324788888887654 6899999887643211
Q ss_pred ----ccccccceeEEEecCC-CcEEEEeec--C-----cEEEEEEccCCC------cceeeeecccccCee-eEEEec-C
Q 007229 533 ----MLFHTARINCLAWSPS-STMVATGSI--D-----TCVIIYEIGKPA------SSRITIKNAHLGGVY-GVAFMD-D 592 (612)
Q Consensus 533 ----~~~~~~~i~~~~~s~~-~~~l~s~~~--d-----~~i~iwd~~~~~------~~~~~~~~~h~~~v~-~~~~~~-~ 592 (612)
.......-.++.+..+ +++++.|+. + ..+.+||+.+.. +..+.... ...... ++...+ +
T Consensus 530 ~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p-~~~R~~~~~~~~~~~ 608 (695)
T 2zwa_A 530 PKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHP-LFQRYGSQIKYITPR 608 (695)
T ss_dssp CSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECG-GGCCBSCEEEEEETT
T ss_pred CCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCC-CCCcccceEEEeCCC
Confidence 1111122233555555 777788875 2 468999998833 11222211 111111 222235 7
Q ss_pred ceEEEccC--------CCeEEEEEecc
Q 007229 593 FNVVSSGE--------DACIRVWRLAT 611 (612)
Q Consensus 593 ~~l~s~~~--------d~~i~~w~~~~ 611 (612)
..++.||. ...+.+||+++
T Consensus 609 ~iyv~GG~~~~~~~~~~~~v~~yd~~t 635 (695)
T 2zwa_A 609 KLLIVGGTSPSGLFDRTNSIISLDPLS 635 (695)
T ss_dssp EEEEECCBCSSCCCCTTTSEEEEETTT
T ss_pred EEEEECCccCCCCCCCCCeEEEEECCC
Confidence 77888874 34588888775
No 345
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.20 E-value=0.64 Score=41.53 Aligned_cols=182 Identities=13% Similarity=0.026 Sum_probs=88.2
Q ss_pred EEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeC-----CCCe-eeEEEEEec--CCc--eeee
Q 007229 73 WIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGD-----GKGK-SFVRAFMWD--SGT--TVGD 142 (612)
Q Consensus 73 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-----~~~~-~~i~i~~~~--~~~--~~~~ 142 (612)
+++.|+ ..+.+||..+.+-....+..........+...+++.++.+|. .... ..-.++.++ +++ .+..
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~ 84 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPP 84 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCC
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCC
Confidence 344555 478899998876322222222233344445568888888883 1111 111255555 222 1212
Q ss_pred eccCCceEEEEEEcCCCCEEEEEeecC--------CeEEEEeCCCCeeeec--ccccccceEEEEECCCCCeEEEEEc-C
Q 007229 143 FDGHSRRVLSCEFKPTRPFRIATCGED--------FLVNFYEGPPFKFKLS--HREHSNFVNCIRFSPDGSKLISVSS-D 211 (612)
Q Consensus 143 ~~~~~~~v~~~~~~~~~~~~l~~~~~d--------~~i~~wd~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~-d 211 (612)
++.....-..+.+ ++. +++.|+.+ ..+.+||..+.+-... +......-.++. .+++.++.|+. +
T Consensus 85 ~p~~r~~~~~~~~--~~~-lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~ 159 (315)
T 4asc_A 85 LPSPRCLFGLGEA--LNS-IYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS--HMDLVYVIGGKGS 159 (315)
T ss_dssp BSSCEESCEEEEE--TTE-EEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCT
T ss_pred CCcchhceeEEEE--CCE-EEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE--ECCEEEEEeCCCC
Confidence 2211111112222 333 67777743 4688999887654332 221111112222 35666677765 2
Q ss_pred -----CcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCC-----cEEEEEe
Q 007229 212 -----RKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADK-----SAKVWEI 264 (612)
Q Consensus 212 -----g~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg-----~i~iw~~ 264 (612)
..+.+||+.+.+....-..+ ...... +++. -+++.++.|+.++ .+.+||+
T Consensus 160 ~~~~~~~~~~yd~~~~~W~~~~~~p-~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~ 219 (315)
T 4asc_A 160 DRKCLNKMCVYDPKKFEWKELAPMQ-TARSLF-GATV-HDGRIIVAAGVTDTGLTSSAEVYSI 219 (315)
T ss_dssp TSCBCCCEEEEETTTTEEEECCCCS-SCCBSC-EEEE-ETTEEEEEEEECSSSEEEEEEEEET
T ss_pred CCcccceEEEEeCCCCeEEECCCCC-Cchhce-EEEE-ECCEEEEEeccCCCCccceEEEEEC
Confidence 46889998876544322111 111111 1222 2677777777654 3556665
No 346
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=95.75 E-value=0.1 Score=46.64 Aligned_cols=196 Identities=10% Similarity=-0.020 Sum_probs=105.4
Q ss_pred EEEEeecCCeEEEEeCCCCeeeeccccc-ccceEEEEE--CCCCCeEEEE--EcCCcEEEEecCCCCeeeeeeccCC-cc
Q 007229 162 RIATCGEDFLVNFYEGPPFKFKLSHREH-SNFVNCIRF--SPDGSKLISV--SSDRKGLIYDGKSGEKIGEFSSEDG-HH 235 (612)
Q Consensus 162 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~-~~~v~~~~~--s~~~~~l~~~--~~dg~i~vwd~~~~~~~~~~~~~~~-~~ 235 (612)
+++.++.||.|.-.|.++|+.+.+++.. ..++....- .+.+..++.+ +.||.+..++.++|.....+..... ..
T Consensus 12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~~ 91 (339)
T 2be1_A 12 ILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVST 91 (339)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHTT
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccceec
Confidence 6899999999999999999999887654 122222110 0112234444 5799999999988866544422100 11
Q ss_pred ccEEE---EEE-----ecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCcccc----ceeeeee-----eccCCE
Q 007229 236 GSIYA---VSW-----SPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAV----EDMLVGC-----LWQNDH 298 (612)
Q Consensus 236 ~~v~~---i~~-----~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-----~~~~~~ 298 (612)
.++.. ... ...+..+++++.+|.+.-.|+ .+++.+..+........ ...+... ...++.
T Consensus 92 SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~----~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~ 167 (339)
T 2be1_A 92 SPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINM----LNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENM 167 (339)
T ss_dssp CSEEEECC----------CCEEEEECEEEEEEEEEET----TTCCEEEEESTTCBCC--------------------CCE
T ss_pred cccccCCCceeecccccccCCEEEEEecCCEEEEEEC----CCCcEEEEEecCCCcccccccccccccccccccccCCCe
Confidence 12221 000 013557888999999999999 99999988876542210 0000000 012456
Q ss_pred EEEEEcCCEEEEEEcCCCCCCce-eecCcccceeE--E--EEE-ecCCcEEEEEecCCcEEEEEcCCceeee
Q 007229 299 LITVSLGGIISIFSASNLDKAPL-SFSGHVKNVST--L--TAL-KISQQTILSSSYDGAIIKWIRGVGYSSK 364 (612)
Q Consensus 299 ~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~v~~--~--~~~-~~~~~~l~~~~~dg~i~~wd~~~~~~~~ 364 (612)
++.+..+..+.+.+ .... ... .+......... + .+. ..++.. +.++.||.|..+|..++....
T Consensus 168 v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 168 IVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred EEEecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence 77777666666655 2221 110 00000000000 0 000 001233 557888999988888777654
No 347
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=95.69 E-value=0.97 Score=39.44 Aligned_cols=69 Identities=12% Similarity=0.099 Sum_probs=40.4
Q ss_pred cceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCC
Q 007229 328 KNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGE 401 (612)
Q Consensus 328 ~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~ 401 (612)
..|..++.-. ...++. . ||.+..|-....-...........|..++.-....+... |+.++.|-.....
T Consensus 24 ~~i~~ia~G~--~h~~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs~~l~-~G~v~~wG~n~~G 92 (282)
T 3qhy_B 24 SGVDAIAGGY--FHGLAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLALK-DGEVIAWGGNEDG 92 (282)
T ss_dssp SSCCEEEECS--SEEEEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEEEEEE-TTEEEEEECCTTS
T ss_pred CCCcEEEeCC--CeEEEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEEEEEE-CCEEEEeeCCCCC
Confidence 3566666553 333333 4 899999976543332222223456777777444433334 8999999866543
No 348
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=95.56 E-value=1.2 Score=39.75 Aligned_cols=116 Identities=7% Similarity=0.001 Sum_probs=65.4
Q ss_pred CEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEE--EcCCEEEEEEcCCCCCCceeecC
Q 007229 248 KKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITV--SLGGIISIFSASNLDKAPLSFSG 325 (612)
Q Consensus 248 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~ 325 (612)
..+++++.||.|.-+|. .+++.+-++......+...........++.++++ +.+|.+..++...+......-..
T Consensus 11 ~~V~v~t~dG~l~Ald~----~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~ 86 (339)
T 2be1_A 11 DILIAADVEGGLHAVDR----RNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIR 86 (339)
T ss_dssp EEEEEEETTSCEEEEET----TTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHH
T ss_pred CEEEEEeCCCeEEEEEC----CCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccc
Confidence 46788889999999998 8888888876641001000000000113345544 57899988886554221110000
Q ss_pred ---cccceeE---EEEEe----cCCcEEEEEecCCcEEEEEcCCceeeeece
Q 007229 326 ---HVKNVST---LTALK----ISQQTILSSSYDGAIIKWIRGVGYSSKLEK 367 (612)
Q Consensus 326 ---~~~~v~~---~~~~~----~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~ 367 (612)
...++.. ....+ ..+..+++|+.+|.+...|..+++......
T Consensus 87 ~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~ 138 (339)
T 2be1_A 87 QLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFG 138 (339)
T ss_dssp HHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEES
T ss_pred cceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEe
Confidence 1111111 00000 026788999999999999999998876554
No 349
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=95.37 E-value=1.6 Score=39.74 Aligned_cols=60 Identities=18% Similarity=0.271 Sum_probs=37.5
Q ss_pred CceEEEEECCCCC-EEEEeeCcCeEEEeecCCCce-eee----eeeecCCCeEEEEECCC---CCEEEEE
Q 007229 60 YPVTVARYSPNGE-WIASADVSGSVRIWGTHNGFV-LKN----EFKVLSGRIDDLQWSPD---GLRIVAC 120 (612)
Q Consensus 60 ~~v~~~~~s~d~~-~las~~~d~~i~iwd~~~~~~-~~~----~~~~~~~~i~~~~~s~~---~~~l~~~ 120 (612)
.....|+|.|||+ ++++ ...|.|++++...... ... ...........++|+|+ +.+|..+
T Consensus 18 ~~P~~i~~~pdG~~l~V~-e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~ 86 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLIT-LRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLS 86 (353)
T ss_dssp SSEEEEEECSTTCCEEEE-ETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEE
T ss_pred CCcEEEEEcCCCCEEEEE-eCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEE
Confidence 3567999999999 5554 4679999998543210 011 11122346789999996 5555444
No 350
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=93.81 E-value=6.2 Score=39.73 Aligned_cols=234 Identities=10% Similarity=0.004 Sum_probs=120.4
Q ss_pred eEEE-EccCCCEEEEec--C----CEEEEEeCCCCceeeE-eccCCC--------ceEEEEECCCCCEEEEe--------
Q 007229 22 ILIS-GNPKTDTILYCN--G----RSVLIRYLDKPLHVEF-YGEHGY--------PVTVARYSPNGEWIASA-------- 77 (612)
Q Consensus 22 ~~~~-~s~d~~~l~~~~--~----~~i~i~~~~~~~~~~~-~~~h~~--------~v~~~~~s~d~~~las~-------- 77 (612)
..++ ++||+++++++- + ..++++|+++++.+.- +. ... ....++|..+..++++.
T Consensus 132 ~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~-~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~ 210 (711)
T 4hvt_A 132 RGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFE-PITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEIT 210 (711)
T ss_dssp EEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSC-CBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBC
T ss_pred eceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcc-cccccccccccccceeeEECCCEEEEEeCCCCCCcC
Confidence 4455 899999999974 2 3899999999876531 22 110 11344776444444432
Q ss_pred --eCcCeEEEeecCCCce-eeeeeeecCCC-eEEEEECCCCCE-----EEEEeCCCCeeeEEEEEecCC---ceeeeecc
Q 007229 78 --DVSGSVRIWGTHNGFV-LKNEFKVLSGR-IDDLQWSPDGLR-----IVACGDGKGKSFVRAFMWDSG---TTVGDFDG 145 (612)
Q Consensus 78 --~~d~~i~iwd~~~~~~-~~~~~~~~~~~-i~~~~~s~~~~~-----l~~~~~~~~~~~i~i~~~~~~---~~~~~~~~ 145 (612)
+....|+.|.+-+... -...+.+.... -.....++++++ +++.+.+... -.++..+.. ..+..+..
T Consensus 211 ~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~l~~ 288 (711)
T 4hvt_A 211 SSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYN--YDNYILDTKYKNLKLQKINM 288 (711)
T ss_dssp TTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSC--EEEEEEECSSSSCEEEECCS
T ss_pred cCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCc--eeEEEEcCCCCCCcceEeec
Confidence 1235689998876532 22233333333 234556777763 4443323221 234544422 22233322
Q ss_pred CCceEEEEEEcCCCCEEEEEe----------ecCCeEEEEeCCCCe-------eeec-c-cccccceEEEEECCCCCeEE
Q 007229 146 HSRRVLSCEFKPTRPFRIATC----------GEDFLVNFYEGPPFK-------FKLS-H-REHSNFVNCIRFSPDGSKLI 206 (612)
Q Consensus 146 ~~~~v~~~~~~~~~~~~l~~~----------~~d~~i~~wd~~~~~-------~~~~-~-~~~~~~v~~~~~s~~~~~l~ 206 (612)
..... +..+.++. +++.. ...+.|...++.++. .... + ......+..+.+..+ .+++
T Consensus 289 ~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~ 364 (711)
T 4hvt_A 289 PSDAT--LQGSFKEY-VFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFL 364 (711)
T ss_dssp CTTCE--EEEEETTE-EEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEE
T ss_pred CCcce--EeeeECCE-EEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEE
Confidence 22211 22344554 34422 135678888876542 1111 2 223446778888876 4666
Q ss_pred EEEcCCc--EEEEecCCCC-eeee-eeccCCccccEEEEEEecCCCEEE-EEeC---CCcEEEEEe
Q 007229 207 SVSSDRK--GLIYDGKSGE-KIGE-FSSEDGHHGSIYAVSWSPDGKKVL-TVSA---DKSAKVWEI 264 (612)
Q Consensus 207 ~~~~dg~--i~vwd~~~~~-~~~~-~~~~~~~~~~v~~i~~~~~~~~l~-~~~~---dg~i~iw~~ 264 (612)
+...++. +.++++.+++ .... +.. ...+.+......+++..++ +.+. -+.+..+|+
T Consensus 365 ~~~~~~~~~l~~~~~~~g~~~~~~~i~l--p~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~ 428 (711)
T 4hvt_A 365 ATYDNVVAKVVTFTLENEQWTKPVVLKL--PYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVK 428 (711)
T ss_dssp EEEETTEEEEEEECEETTEECCCEEECC--CSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECT
T ss_pred EEEECCEEEEEEEECCCCceEEEeccCC--CCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeC
Confidence 6666764 6677776664 2222 211 2234566666667665444 3332 245666665
No 351
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=93.43 E-value=4 Score=36.33 Aligned_cols=163 Identities=15% Similarity=0.183 Sum_probs=94.2
Q ss_pred CceEEEE-EEcC--CCCEEEEEeecCCeEEEEeCCCCee-------eecccccccceEEEEECCCCCeEEEEEcCCcEEE
Q 007229 147 SRRVLSC-EFKP--TRPFRIATCGEDFLVNFYEGPPFKF-------KLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLI 216 (612)
Q Consensus 147 ~~~v~~~-~~~~--~~~~~l~~~~~d~~i~~wd~~~~~~-------~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v 216 (612)
...|.++ .+.+ +.+ .++..+.+|.++--.+..... ...++. .+.+..+........|+..+..|.+..
T Consensus 94 ~e~i~~~~~~~~~~~e~-~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~r 171 (327)
T 3uc1_A 94 EERIAQVIQIRGYTDAP-YLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIR 171 (327)
T ss_dssp TCCEEEEEEESSTTSSS-EEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEE
T ss_pred CCEEEEEEEeccCCCCC-EEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEE
Confidence 3445554 4432 455 599999999999987654322 223433 344555555555567888899999988
Q ss_pred EecC--CCCee-------eeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCC---CCCeeEeeeeccCccc
Q 007229 217 YDGK--SGEKI-------GEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDG---SGGRVIKTFASSTSNA 284 (612)
Q Consensus 217 wd~~--~~~~~-------~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~---~~~~~~~~~~~~~~~~ 284 (612)
+... .-... ..+. . .....|.++...+++.+++..+..|.++.-.+.+-. ..++-+..+.....
T Consensus 172 f~~~~~eip~~gr~a~Gv~~i~-L-~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~-- 247 (327)
T 3uc1_A 172 FSATDEALRPMGRATSGVQGMR-F-NIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRR-- 247 (327)
T ss_dssp EECCTTTSCCCCTTSBCEESSC-C-CTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTT--
T ss_pred EECcccccCcCCcCCCCeeeec-C-CCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCC--
Confidence 8766 21111 1110 1 345567777776667789999999999888873321 11122333322211
Q ss_pred cceeeeeee-ccCCEEEEEEcCCEEEEEEcCC
Q 007229 285 VEDMLVGCL-WQNDHLITVSLGGIISIFSASN 315 (612)
Q Consensus 285 ~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~ 315 (612)
....+.... ..++.++..+.+|.+..++...
T Consensus 248 ~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 248 RGRLVGALIVDDDSELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp TCSEEEEEEECTTCEEEEEEGGGCEEEEEGGG
T ss_pred CCeEEEEEEeCCCccEEEEcCCCeEEEEehhh
Confidence 111222222 2356788888888888887543
No 352
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=93.40 E-value=4.2 Score=36.51 Aligned_cols=149 Identities=14% Similarity=0.064 Sum_probs=80.6
Q ss_pred eccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceee-e----eeeecCCCeEEEEECCC---CCEEEE-EeCCCC
Q 007229 55 YGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLK-N----EFKVLSGRIDDLQWSPD---GLRIVA-CGDGKG 125 (612)
Q Consensus 55 ~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~-~----~~~~~~~~i~~~~~s~~---~~~l~~-~~~~~~ 125 (612)
+...-.....|+|.|||+++++-...|.|++++..+++... . ...........++|+|| +.+|.. -+....
T Consensus 27 va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~ 106 (347)
T 3das_A 27 VATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASD 106 (347)
T ss_dssp EECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSS
T ss_pred eecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCC
Confidence 33334466799999999988877658999999876654211 1 11223567899999996 344443 332222
Q ss_pred eeeEEEEEecCC----------cee-eeec-cCCceEEEEEEcCCCCEEEEEeec-------------CCeEEEEeCCCC
Q 007229 126 KSFVRAFMWDSG----------TTV-GDFD-GHSRRVLSCEFKPTRPFRIATCGE-------------DFLVNFYEGPPF 180 (612)
Q Consensus 126 ~~~i~i~~~~~~----------~~~-~~~~-~~~~~v~~~~~~~~~~~~l~~~~~-------------d~~i~~wd~~~~ 180 (612)
. .|.-+.++.+ +.+ ..+. .....-..|+|.|||. +.++.+. .|.|.-.+....
T Consensus 107 ~-~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~-Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ 184 (347)
T 3das_A 107 N-RIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM-LYAGTGESGDTGLSQDRKSLGGKILRMTPDGE 184 (347)
T ss_dssp E-EEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC-EEEECBCTTCGGGTTCTTCSTTCEEEECTTSS
T ss_pred C-EEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCC-EEEEECCCCCCccccCCCCCCCEEEEEeCCCC
Confidence 2 1222222221 111 1222 1122346799999997 4555432 344444454321
Q ss_pred ---------eeeecccccccceEEEEECCCCCeEEE
Q 007229 181 ---------KFKLSHREHSNFVNCIRFSPDGSKLIS 207 (612)
Q Consensus 181 ---------~~~~~~~~~~~~v~~~~~s~~~~~l~~ 207 (612)
..+. -.+|. ....++|+|+|++.++
T Consensus 185 ip~~nPf~~~~i~-a~G~R-Np~Gla~dp~G~L~~~ 218 (347)
T 3das_A 185 PAPGNPFPGSPVY-SYGHR-NVQGLAWDDKQRLFAS 218 (347)
T ss_dssp BCTTCSSTTCCEE-EBCCS-BCCEEEECTTCCEEEE
T ss_pred ccCCCCCCCCeEE-eeCCC-CcceEEECCCCCEEEE
Confidence 1111 12443 3567899998764443
No 353
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=92.99 E-value=4.5 Score=35.69 Aligned_cols=238 Identities=10% Similarity=0.098 Sum_probs=119.7
Q ss_pred CCCCEEEEeeCcCeEEEeecCCCceeee--------eeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec-----
Q 007229 69 PNGEWIASADVSGSVRIWGTHNGFVLKN--------EFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD----- 135 (612)
Q Consensus 69 ~d~~~las~~~d~~i~iwd~~~~~~~~~--------~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~----- 135 (612)
|+..++++.+.+|.|+--.+.+-+.... .+. ....+..+........|+..++.+....+.++.+.
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~k-e~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~ 79 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIK-EEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRG 79 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSS
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeC-CCCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCC
Confidence 4556788888889888766654321110 011 22334444444445555555555532112222221
Q ss_pred -CCceee---eeccCCceEEEEEEc---CCCCEEEEEeecCCeEEEEeCCCCe-------eeecccccccceEEEEECCC
Q 007229 136 -SGTTVG---DFDGHSRRVLSCEFK---PTRPFRIATCGEDFLVNFYEGPPFK-------FKLSHREHSNFVNCIRFSPD 201 (612)
Q Consensus 136 -~~~~~~---~~~~~~~~v~~~~~~---~~~~~~l~~~~~d~~i~~wd~~~~~-------~~~~~~~~~~~v~~~~~s~~ 201 (612)
.|.++. .+. ..+.|.++... ++++ .++..+.+|.++--.+.... ....+..+ +.+..+....+
T Consensus 80 a~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~-~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~ 156 (307)
T 1zi0_A 80 ARGRPIVNLLPLE-QDERITAILPVTEFEEGV-KVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSG 156 (307)
T ss_dssp SCCEEGGGTSCCC-TTCCEEEEEEESCCCTTC-EEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECT
T ss_pred CCCeEhhhccCCC-CCCEEEEEEEeccCCCCc-EEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCC
Confidence 122222 122 33445555332 3455 48889999999988754222 22223334 45555555555
Q ss_pred CCeEEEEEcCCcEEEEecCCCCee-------eeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCC---C
Q 007229 202 GSKLISVSSDRKGLIYDGKSGEKI-------GEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSG---G 271 (612)
Q Consensus 202 ~~~l~~~~~dg~i~vwd~~~~~~~-------~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~---~ 271 (612)
...++..+.+|.+..++...-... .-+. . .....|.++...+++..+++.+..|..+-.++.+-... +
T Consensus 157 ~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~-L-~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~ 234 (307)
T 1zi0_A 157 EDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIR-L-GEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRAT 234 (307)
T ss_dssp TCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCC-C-CTTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTS
T ss_pred CCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEE-e-CCCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCC
Confidence 557778888999888876532111 1111 1 33456777765555667888889999888877322111 1
Q ss_pred eeEeeeeccCccccceeeeeee--ccCCEEEEEEcCCEEEEEEcCC
Q 007229 272 RVIKTFASSTSNAVEDMLVGCL--WQNDHLITVSLGGIISIFSASN 315 (612)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~ 315 (612)
+-+..+.... ....+.++. ..+..++..+.+|.+.-++...
T Consensus 235 kG~~~~~~~~---~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 235 KGVISIKVTE---RNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp CCEESSCCCT---TTCSEEEEEEECTTCEEEEEESSCCEEEEEGGG
T ss_pred CCEEeeEecC---CCCeEEEEEEeCCCceEEEEcCCCcEEEEeccc
Confidence 1122222111 111222222 1355677777777776666443
No 354
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=91.32 E-value=6.8 Score=34.05 Aligned_cols=243 Identities=13% Similarity=0.062 Sum_probs=129.7
Q ss_pred eeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeecee
Q 007229 289 LVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKK 368 (612)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~ 368 (612)
+..+.......++.. +|.+..|-.......-.. ......|..++... ...++. . ||.+..|-....-..-....
T Consensus 26 i~~ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg~p-~~~~~~i~~ia~G~--~hs~~l-~-~G~v~~wG~n~~Gqlg~P~~ 99 (282)
T 3qhy_B 26 VDAIAGGYFHGLALK-GGKVLGWGANLNGQLTMP-AATQSGVDAIAAGN--YHSLAL-K-DGEVIAWGGNEDGQTTVPAE 99 (282)
T ss_dssp CCEEEECSSEEEEEE-TTEEEEEECCSSSTTSCC-GGGGSCCCEEEECS--SEEEEE-E-TTEEEEEECCTTSTTCCCGG
T ss_pred CcEEEeCCCeEEEEE-CCEEEEEeCCCCCCCCCC-ccCCCCEEEEEeCC--CEEEEE-E-CCEEEEeeCCCCCCCCCCcc
Confidence 333444455555556 999999985554332211 11233566666653 344444 4 89999997654332222222
Q ss_pred cccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeec
Q 007229 369 YDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKID 448 (612)
Q Consensus 369 ~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (612)
....|..++.-....+... ++.++.|-......... ...
T Consensus 100 ~~~~v~~ia~G~~hs~al~-~G~v~~wG~n~~gqlg~----------------------------------------~~~ 138 (282)
T 3qhy_B 100 ARSGVDAIAAGAWASYALK-DGKVIAWGDDSDGQTTV----------------------------------------PAE 138 (282)
T ss_dssp GSSSEEEEEEETTEEEEEE-TTEEEEEECCTTSTTSC----------------------------------------CGG
T ss_pred cCCCeEEEECcCCEEEEEe-CCeEEEecCCCCCcCCC----------------------------------------Ccc
Confidence 3457888888666666666 99999998765432200 000
Q ss_pred ccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcce
Q 007229 449 LGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEV 528 (612)
Q Consensus 449 ~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~ 528 (612)
....|..++...+.. ++ -. ||.|+.|-....... .....-...|..++...+. .++. .||.++.|-......
T Consensus 139 ~~~~i~~i~~G~~~~-~~-l~-~G~v~~wG~n~~gql--g~p~~~~~~v~~i~~G~~h-s~al--~~G~v~~wG~n~~gq 210 (282)
T 3qhy_B 139 AQSGVTALDGGVYTA-LA-VK-NGGVIAWGDNYFGQT--TVPAEAQSGVDDVAGGIFH-SLAL--KDGKVIAWGDNRYKQ 210 (282)
T ss_dssp GGSSEEEEEECSSEE-EE-EE-TTEEEEEECCTTSTT--SCCGGGGSSEEEEEECSSE-EEEE--ETTEEEEEECCTTST
T ss_pred CCCCeEEEEcccCEE-EE-EE-CCEEEEecCCCCCCC--CCceecCCCeEEEEecCCE-EEEE--ECCeEEEEECCCCCC
Confidence 112355555443332 22 23 688888866532221 1111123567777765543 3333 589999996554322
Q ss_pred eeecccccccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeecccccCeeeEEEecCceEE
Q 007229 529 KLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFMDDFNVV 596 (612)
Q Consensus 529 ~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~ 596 (612)
+- ........|..++-..+.. ++.. ||.++.|=....+ + +.. ...|.+++-.....++
T Consensus 211 lg-~p~~~~~~v~~i~~G~~h~-~al~--~g~v~~wG~n~~g-q-~~v----~~~v~~iaaG~~h~~a 268 (282)
T 3qhy_B 211 TT-VPTEALSGVSAIASGEWYS-LALK--NGKVIAWGSSRTA-P-SSV----QSGVSSIEAGPNAAYA 268 (282)
T ss_dssp TC-CCGGGGSSCCEEEECSSCE-EEEE--TTEEEEESTTCCC-C-GGG----SSCEEEEEECSSCEEE
T ss_pred CC-CCcccCCCceEEEcCCCEE-EEEE--CCEEEEecCCCCc-c-ccC----CCCcEEEEECcCeEEE
Confidence 21 1111234577777654433 3333 9999999776633 2 211 3457777665333333
No 355
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=90.08 E-value=15 Score=38.55 Aligned_cols=38 Identities=16% Similarity=0.122 Sum_probs=33.5
Q ss_pred ceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeee
Q 007229 192 FVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFS 229 (612)
Q Consensus 192 ~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 229 (612)
.+.+++..++..++++.+.|+++|+|++.+++++....
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 56778888888999999999999999999999887753
No 356
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=89.91 E-value=10 Score=33.74 Aligned_cols=160 Identities=9% Similarity=0.021 Sum_probs=92.9
Q ss_pred ccceEEEEEEcc---CCCeEEEEecCCeEEEEEccCcccc-----cceeeccccCceEEEEEcCCCcEEEEEcCCCeEEE
Q 007229 449 LGFTVTACAIAP---DGSEAIVGGQNGKLHIYSISGNTLT-----EEMVLEKHRGAITVIQYSPDVSMFASADGNREAIV 520 (612)
Q Consensus 449 ~~~~i~~~~~s~---~~~~l~~~~~dg~v~i~d~~~~~~~-----~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i 520 (612)
....|.++..-+ +..+++..+.+|.++.-.+..-... ....+.. ...+..+........|+..+..|.+..
T Consensus 93 ~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~r 171 (327)
T 3uc1_A 93 PEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIR 171 (327)
T ss_dssp TTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEE
T ss_pred CCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEE
Confidence 344555554433 5789999999999999887643211 0122333 344555544455567777888899888
Q ss_pred EecC--Cccee--------eecccccccceeEEEecCCCcEEEEeecCcEEEEEEccCCCc-----ceeee--ecccccC
Q 007229 521 WDRV--SKEVK--------LNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPAS-----SRITI--KNAHLGG 583 (612)
Q Consensus 521 wd~~--~~~~~--------~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~-----~~~~~--~~~h~~~ 583 (612)
+... .-... ...+. ....|.++...+++.+|+..+..|.++.-.+..-.. .-+.. +..-.+.
T Consensus 172 f~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~ 250 (327)
T 3uc1_A 172 FSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGR 250 (327)
T ss_dssp EECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCS
T ss_pred EECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCe
Confidence 8776 21111 01122 345576766666667889999999999888754100 11111 2221345
Q ss_pred eeeEEEe-cCceEEEccCCCeEEEEEec
Q 007229 584 VYGVAFM-DDFNVVSSGEDACIRVWRLA 610 (612)
Q Consensus 584 v~~~~~~-~~~~l~s~~~d~~i~~w~~~ 610 (612)
+..+... ++..++..+.+|.+.-++++
T Consensus 251 lv~~~~~~~~~~i~l~T~~G~~ir~~~~ 278 (327)
T 3uc1_A 251 LVGALIVDDDSELYAVTSGGGVIRTAAR 278 (327)
T ss_dssp EEEEEEECTTCEEEEEEGGGCEEEEEGG
T ss_pred EEEEEEeCCCccEEEEcCCCeEEEEehh
Confidence 6555544 55566666667766665543
No 357
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=88.77 E-value=12 Score=32.99 Aligned_cols=159 Identities=9% Similarity=0.025 Sum_probs=89.1
Q ss_pred ccceEEEEEEc---cCCCeEEEEecCCeEEEEEccCcccc-----cceeeccccCceEEEEEcCCCcEEEEEcCCCeEEE
Q 007229 449 LGFTVTACAIA---PDGSEAIVGGQNGKLHIYSISGNTLT-----EEMVLEKHRGAITVIQYSPDVSMFASADGNREAIV 520 (612)
Q Consensus 449 ~~~~i~~~~~s---~~~~~l~~~~~dg~v~i~d~~~~~~~-----~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i 520 (612)
....|.++..- +++.+++..+.+|.++.-.+..-... ....+..+ +.+..+....+...++..+.+|.+..
T Consensus 93 ~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~~~i~l~T~~G~~ir 171 (307)
T 1zi0_A 93 QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGEDEVMLFSAEGKVVR 171 (307)
T ss_dssp TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTTCEEEEEETTSEEEE
T ss_pred CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCCCEEEEECCCCcEEE
Confidence 34456555432 35667899999999999887532210 11223333 45555544444556777778888888
Q ss_pred EecCCccee--------eecccccccceeEEEecCCCcEEEEeecCcEEEEEEccCC---Cc--c--eeeeecccccCee
Q 007229 521 WDRVSKEVK--------LNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKP---AS--S--RITIKNAHLGGVY 585 (612)
Q Consensus 521 wd~~~~~~~--------~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~---~~--~--~~~~~~~h~~~v~ 585 (612)
++...-... ...+. ....|.++...+++..|++.+..|.++-.++..- .. . ....+..-.+.+.
T Consensus 172 f~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~~~~~~~~~~~~lv 250 (307)
T 1zi0_A 172 FKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVV 250 (307)
T ss_dssp EEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCCEESSCCCTTTCSEE
T ss_pred EEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCCEEeeEecCCCCeEE
Confidence 876432111 01122 2345666655555667888899999998887430 00 1 1111222335666
Q ss_pred eEEEe-cCceEEEccCCCeEEEEEe
Q 007229 586 GVAFM-DDFNVVSSGEDACIRVWRL 609 (612)
Q Consensus 586 ~~~~~-~~~~l~s~~~d~~i~~w~~ 609 (612)
.+... ++..++..+.+|.+.-.++
T Consensus 251 ~~~~v~~~~~l~~~t~~g~~ir~~~ 275 (307)
T 1zi0_A 251 GAVQVDDCDQIMMITDAGTLVRTRV 275 (307)
T ss_dssp EEEEECTTCEEEEEESSCCEEEEEG
T ss_pred EEEEeCCCceEEEEcCCCcEEEEec
Confidence 65554 5555666666666655444
No 358
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=88.51 E-value=15 Score=33.82 Aligned_cols=180 Identities=10% Similarity=-0.006 Sum_probs=87.1
Q ss_pred EEEEeeCcCeEEEeecCC-Cceeeee-eeecCCCeEEEEECC--CCCEEEEEeCCCCeeeEEEEEec-CCceeeeec---
Q 007229 73 WIASADVSGSVRIWGTHN-GFVLKNE-FKVLSGRIDDLQWSP--DGLRIVACGDGKGKSFVRAFMWD-SGTTVGDFD--- 144 (612)
Q Consensus 73 ~las~~~d~~i~iwd~~~-~~~~~~~-~~~~~~~i~~~~~s~--~~~~l~~~~~~~~~~~i~i~~~~-~~~~~~~~~--- 144 (612)
.|..|...| +.+.+... ++.-... .......|.++++.| ++..++.+...... ..|+..+ .++.-..+.
T Consensus 24 ~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g--~gl~~s~D~G~tW~~~~~~~ 100 (394)
T 3b7f_A 24 MLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLG--PTVFRSDDGGGNWTEATRPP 100 (394)
T ss_dssp EEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CC--EEEEEESSTTSCCEECSBCC
T ss_pred EEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCC--ccEEEeCCCCCCceECCccc
Confidence 566666666 54554432 2211111 112345799999998 55555544332000 0244443 333222211
Q ss_pred ---c--------CCceEEEEEEcCC--CCEEEEEeecCCeEEEEeC--CCCeeeecccc----------------cccce
Q 007229 145 ---G--------HSRRVLSCEFKPT--RPFRIATCGEDFLVNFYEG--PPFKFKLSHRE----------------HSNFV 193 (612)
Q Consensus 145 ---~--------~~~~v~~~~~~~~--~~~~l~~~~~d~~i~~wd~--~~~~~~~~~~~----------------~~~~v 193 (612)
. ....|.++++.|. .. .+..+...+.|...+- .+.+.+..+.. ....+
T Consensus 101 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~-~l~~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i 179 (394)
T 3b7f_A 101 AFNKAPEGETGRVVDHVFWLTPGHASEPG-TWYAGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKM 179 (394)
T ss_dssp CCCCCC----CCCCCEEEEEEECCTTSTT-CEEEEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEE
T ss_pred cCCCcccccccccccceeEEEeCCCCCCC-EEEEEecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCce
Confidence 1 1236888999873 33 3666666665655532 22233221111 12357
Q ss_pred EEEEECCC-CCeEEEEEcCCcEEEEecCCCCeeeeeecc-CC---------ccccEEEEEEecC-CCEEEEEeCCC
Q 007229 194 NCIRFSPD-GSKLISVSSDRKGLIYDGKSGEKIGEFSSE-DG---------HHGSIYAVSWSPD-GKKVLTVSADK 257 (612)
Q Consensus 194 ~~~~~s~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~---------~~~~v~~i~~~~~-~~~l~~~~~dg 257 (612)
.+|.+.|. ...|+.+..++.|...+ ..|+....+... .. ....+.++++.|+ ...+..+...+
T Consensus 180 ~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g 254 (394)
T 3b7f_A 180 HSILVDPRDPKHLYIGMSSGGVFEST-DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG 254 (394)
T ss_dssp EEEEECTTCTTCEEEEEETBEEEEES-STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE
T ss_pred eEEEECCCCCCEEEEEECCCCEEEEC-CCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe
Confidence 89999983 44566665555554443 334333332110 00 0135889999985 35566665544
No 359
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=88.48 E-value=13 Score=33.03 Aligned_cols=239 Identities=9% Similarity=0.071 Sum_probs=121.7
Q ss_pred CCCCEEEEeeCcCeEEEeecCCCce---eeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec------CCce
Q 007229 69 PNGEWIASADVSGSVRIWGTHNGFV---LKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD------SGTT 139 (612)
Q Consensus 69 ~d~~~las~~~d~~i~iwd~~~~~~---~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~------~~~~ 139 (612)
|+..++++.+.+|.|+--.+..-+. ....+. ....+..+........|+..++.+....+.++.+. .|.+
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lk-e~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~ 81 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMK-DTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQH 81 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCC-TTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEE
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccC-CCCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcC
Confidence 5667788888888888765442110 000111 22344444444445556666655532111222211 1222
Q ss_pred eee---eccCCceEEEE-EEcC--CCCEEEEEeecCCeEEEEeCCCCe--------eeecccccccceEEEEECCCCCeE
Q 007229 140 VGD---FDGHSRRVLSC-EFKP--TRPFRIATCGEDFLVNFYEGPPFK--------FKLSHREHSNFVNCIRFSPDGSKL 205 (612)
Q Consensus 140 ~~~---~~~~~~~v~~~-~~~~--~~~~~l~~~~~d~~i~~wd~~~~~--------~~~~~~~~~~~v~~~~~s~~~~~l 205 (612)
+.. +. ..+.|.++ ...+ ++.+ ++..+.+|.++--.+.... ....+... +.+..+........+
T Consensus 82 i~~~i~L~-~~e~Iv~~~~~~~~~~~~~-ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~-d~lv~~~~~~~~~~i 158 (323)
T 1wp5_A 82 IANIIPID-RDEEIIKAIPINDFELNGY-FLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKND-DQVVDVHLTDGMNEL 158 (323)
T ss_dssp GGGTSCCC-TTCCEEEEEEESCTTSSCE-EEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTT-CCEEEEEEECSCSEE
T ss_pred hhhccCCC-CCCEEEEEEEecccCCCce-EEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCC-CEEEEEEEeCCCCEE
Confidence 222 22 23345544 4432 2554 8888999999998764322 22223333 455555555555678
Q ss_pred EEEEcCCcEEEEecCCCCee-------eeeeccCCccccEEEEEEecCCC-EEEEEeCCCcEEEEEeecCC---CCCeeE
Q 007229 206 ISVSSDRKGLIYDGKSGEKI-------GEFSSEDGHHGSIYAVSWSPDGK-KVLTVSADKSAKVWEILEDG---SGGRVI 274 (612)
Q Consensus 206 ~~~~~dg~i~vwd~~~~~~~-------~~~~~~~~~~~~v~~i~~~~~~~-~l~~~~~dg~i~iw~~~~~~---~~~~~~ 274 (612)
+..+.+|.+..++...-... .-+. . .....|.++...+++. .+++.+..|..+..++.+-. ..++-+
T Consensus 159 ~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~-L-~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kGv 236 (323)
T 1wp5_A 159 FLVTHNGYALWFDESEVSIVGVRAAGVKGMN-L-KEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGV 236 (323)
T ss_dssp EEEETTSEEEEEEGGGSCBCCSSCCCEECCC-C-CTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCE
T ss_pred EEEeCCCcEEEEEHHHCcccCCCCcCEEEEE-e-CCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCCE
Confidence 88899999988876532111 1111 1 2345567765555455 78888889988887774311 112222
Q ss_pred eeeeccCccccceeee-eeecc-CCEEEEEEcCCEEEEEEcCC
Q 007229 275 KTFASSTSNAVEDMLV-GCLWQ-NDHLITVSLGGIISIFSASN 315 (612)
Q Consensus 275 ~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~i~~~~~~~ 315 (612)
..+..... ....+. ..... ++.++..+.+|.+..+....
T Consensus 237 ~~~~~~~~--~~~~l~~~~~v~~~~~i~~it~~g~~ir~~~~~ 277 (323)
T 1wp5_A 237 VILRELKA--NPHRISGFVVAQDSDTIYLQTEKSFIETIKVGD 277 (323)
T ss_dssp ECSCCCSS--SCCCEEEEEEECTTCEEEEEETTSCEEEEEGGG
T ss_pred ECeeecCC--CCceEEEEEEeCCCCeEEEEeCCCeEEEEEhhh
Confidence 22221110 111222 22222 56677777777776666443
No 360
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=87.40 E-value=17 Score=33.06 Aligned_cols=238 Identities=11% Similarity=0.064 Sum_probs=124.1
Q ss_pred ECCCCCEEEEeeCcCeEEEeecCCCc-------eeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec----
Q 007229 67 YSPNGEWIASADVSGSVRIWGTHNGF-------VLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD---- 135 (612)
Q Consensus 67 ~s~d~~~las~~~d~~i~iwd~~~~~-------~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~---- 135 (612)
+-|+..++++.+.+|.|+--.+..-+ .+...-......+..+........|+..+..+.. +++-.++
T Consensus 3 lI~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke~D~l~~~~~~~t~d~ll~fT~~G~~--~~~~~~eip~~ 80 (370)
T 3l6v_A 3 LIAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKEEDFIDQLWLVNTHDTLLTFTSSGKV--FWLPVHQLPEA 80 (370)
T ss_dssp CCCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSCCCCEEEEEEECTTCEEEEEETTSEE--EEEEGGGSCBC
T ss_pred cccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCCCCEEEEEEEecCCCEEEEEeCCCeE--EEEEHHHCcCC
Confidence 34777889999999999876543211 1111111223455555555555666666665532 2222222
Q ss_pred ----CCceeee---eccCCceEEEEE-EcC--CCCEEEEEeecCCeEEEEeCCCCe-------eeecccccccceEEEEE
Q 007229 136 ----SGTTVGD---FDGHSRRVLSCE-FKP--TRPFRIATCGEDFLVNFYEGPPFK-------FKLSHREHSNFVNCIRF 198 (612)
Q Consensus 136 ----~~~~~~~---~~~~~~~v~~~~-~~~--~~~~~l~~~~~d~~i~~wd~~~~~-------~~~~~~~~~~~v~~~~~ 198 (612)
.|.++.. +. ....|.++. +.. ++. .++.++..|.++--.+.... ....+.. .+.+..+..
T Consensus 81 ~r~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~-~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~-~d~lv~v~~ 157 (370)
T 3l6v_A 81 GSNARGRPIINWIPLE-SGERVQAVLPVREYADNR-YVFMATRNGTVKKTPLSEFAFRLARGKIAINLDE-GDALVGVAL 157 (370)
T ss_dssp CTTSCCEEGGGSCCCC-TTCCEEEEEEESCCCTTC-EEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCT-TCCEEEEEE
T ss_pred CcccCCcCHhhccCCC-CCCEEEEEEEeccCCCCc-EEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCC-CCEEEEEEE
Confidence 1222222 22 234555544 322 344 48999999999988754332 2222333 344555555
Q ss_pred CCCCCeEEEEEcCCcEEEEecCCCCee-------eeeeccCCccccEEEEEEec--------------------------
Q 007229 199 SPDGSKLISVSSDRKGLIYDGKSGEKI-------GEFSSEDGHHGSIYAVSWSP-------------------------- 245 (612)
Q Consensus 199 s~~~~~l~~~~~dg~i~vwd~~~~~~~-------~~~~~~~~~~~~v~~i~~~~-------------------------- 245 (612)
..+...++..+.+|.+..++...-... .-+. . .....|.++...+
T Consensus 158 ~~~~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~-L-~~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~ 235 (370)
T 3l6v_A 158 TDGDRDVLLFASNGKTVRFGESTVRSMGRTATGVRGIR-L-AKGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEP 235 (370)
T ss_dssp ECSCCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCC-C-CTTCCEEEEEEECCC------------------------
T ss_pred eCCCceEEEEeCCCeEEEEEccccCccCCCCCCeeeEE-e-CCCCEEEEEEEeccccccccccccccccccccccccccc
Confidence 555567888888998888876432111 1110 0 2345566655544
Q ss_pred ---------CCCEEEEEeCCCcEEEEEeecCCCC---CeeEeeeeccCccccceeeeeee--ccCCEEEEEEcCCEEEEE
Q 007229 246 ---------DGKKVLTVSADKSAKVWEILEDGSG---GRVIKTFASSTSNAVEDMLVGCL--WQNDHLITVSLGGIISIF 311 (612)
Q Consensus 246 ---------~~~~l~~~~~dg~i~iw~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~ 311 (612)
++..+++.+..|..+...+.+-... ++-+..+..... ...+.++. ..++.++..+..|.+.-.
T Consensus 236 ~~~~~~~~~~~~~il~vTe~G~gKrt~~~e~~~~~Rg~kGv~~~k~~~~---~g~lv~~~~v~~~d~i~liT~~G~~iR~ 312 (370)
T 3l6v_A 236 AVIDVADNGDVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTER---NGKLVRAVLLGSTDEVMLISDGGTLVRT 312 (370)
T ss_dssp -----------CEEEEEETTSEEEEEEGGGSCCBCTTSCCEESSCCCTT---TCSEEEEEEECTTCEEEEEETTCCEEEE
T ss_pred cccccccccCCceEEEeeCCCCEEEEEHHHhcccccCCcceEEEEecCC---CCcEEEEEEeCCCceEEEEcCCCeEEEe
Confidence 4457888899999888887432222 222233322211 11222221 235677777777776666
Q ss_pred EcC
Q 007229 312 SAS 314 (612)
Q Consensus 312 ~~~ 314 (612)
...
T Consensus 313 ~v~ 315 (370)
T 3l6v_A 313 RGS 315 (370)
T ss_dssp EGG
T ss_pred eHh
Confidence 543
No 361
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=87.23 E-value=18 Score=33.26 Aligned_cols=287 Identities=10% Similarity=0.059 Sum_probs=132.0
Q ss_pred CEEEEEeCCCcEEEEEeecCCCCC----eeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCC----
Q 007229 248 KKVLTVSADKSAKVWEILEDGSGG----RVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKA---- 319 (612)
Q Consensus 248 ~~l~~~~~dg~i~iw~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~---- 319 (612)
+.++....||.|..|=....+.-+ ....... .........+..+.......++...+|.+..|-.......
T Consensus 11 ~~~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~-~v~~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG~g~ 89 (389)
T 3kci_A 11 RENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPT-PCEALATLRPVQLIGGEQTLFAVTADGKLYATGYGAGGRLGIGG 89 (389)
T ss_dssp ----------CEEEEEECTTSTTSSCSCSEEEEEE-ECHHHHHTCEEEEEEETTEEEEEETTSCEEEEECCGGGTTSSSS
T ss_pred ccceeECCCCeEEEeeCCCCccCCCCcCccccCCE-ecccccCCceEEEEeCCCeEEEEcCCCcEEEEECCCCCCCCCCC
Confidence 345556677888888764332222 1111100 0000011123344445777888889999999964332110
Q ss_pred ------ceeecC-cccceeEEEEEecCCcEEEEEecCCcEEEEEcCCc-----------e-eeeeceecccceEEEEeec
Q 007229 320 ------PLSFSG-HVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVG-----------Y-SSKLEKKYDARIKCLAAVE 380 (612)
Q Consensus 320 ------~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~-----------~-~~~~~~~~~~~i~~~~~~~ 380 (612)
...+.. ....+..+++. ......+.-..||.|+.|-.... . +..........|..++.-.
T Consensus 90 ~~~~~~p~~v~~~~~~~~~~v~i~-~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G~ 168 (389)
T 3kci_A 90 TESVSTPTLLESIQHVFIKKVAVN-SGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGG 168 (389)
T ss_dssp SCCEEEEEECGGGTTSCEEEEEEC-TTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECS
T ss_pred cCCccCCEEcccccCCceeEEEEC-cCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeCc
Confidence 011111 11123333333 12556666778999999954321 0 1111111234678888877
Q ss_pred cEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEcc
Q 007229 381 EVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAP 460 (612)
Q Consensus 381 ~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 460 (612)
...+....+|.++.|-.......-.. ... ....| ..+. ......+..++...
T Consensus 169 ~hs~alt~~G~v~~wG~n~~GqLG~~-----~~~--~~~~p--------------------~~v~-~~~~~~v~~ia~G~ 220 (389)
T 3kci_A 169 AHSACVTAAGDLYTWGKGRYGRLGHS-----DSE--DQLKP--------------------KLVE-ALQGHRVVDIACGS 220 (389)
T ss_dssp SEEEEEETTSCEEEEECCGGGTTCSS-----SCC--CEEEE--------------------EECG-GGTTSCEEEEEECC
T ss_pred CeEEEEeCCCeEEEeCCCCCCCcCCC-----CCc--ccccc--------------------eEec-ccCCCeEEEEEEcC
Confidence 77777888999999976542211000 000 00000 0000 00122455666554
Q ss_pred CCCeEEEEecCCeEEEEEccCc-cc--------ccceeecc-ccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCccee-
Q 007229 461 DGSEAIVGGQNGKLHIYSISGN-TL--------TEEMVLEK-HRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVK- 529 (612)
Q Consensus 461 ~~~~l~~~~~dg~v~i~d~~~~-~~--------~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~- 529 (612)
.....++-..+|.|+.|-.... ++ .....+.. ....|..++...+ ..+.-..||.|+.|=......+
T Consensus 221 g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~--hs~alt~~G~v~~wG~n~~GqLG 298 (389)
T 3kci_A 221 GDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQ--FSVALTKSGAVYTWGKGDYHRLG 298 (389)
T ss_dssp SSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETT--EEEEEETTSCEEEEECCGGGTTC
T ss_pred CCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCCC--EEEEEeCCCeEEEEeCCCCCCCC
Confidence 3345556678888888864321 11 00011111 1224666655433 3344457899999965321110
Q ss_pred ---------eeccc-ccccceeEEEecCCCcEEEEeecCcEEEEEEccC
Q 007229 530 ---------LNNML-FHTARINCLAWSPSSTMVATGSIDTCVIIYEIGK 568 (612)
Q Consensus 530 ---------~~~~~-~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~ 568 (612)
..... .....|..++-.. ...+.-..||.|+.|=...
T Consensus 299 ~g~~~~~~~P~~v~~l~~~~v~~ia~G~--~h~~al~~~G~v~~wG~n~ 345 (389)
T 3kci_A 299 HGSDDHVRRPRQVQGLQGKKVIAIATGS--LHCVCCTEDGEVYTWGDND 345 (389)
T ss_dssp SSSCCCEEEEEECGGGTTCCEEEEEECS--SEEEEEETTCCEEEEECCT
T ss_pred CCCCccccCCeEeccCCCCCEEEEEecc--CeEEEECCCCCEEEeeCCC
Confidence 01111 1123455555533 3444456899999998765
No 362
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=87.12 E-value=16 Score=32.49 Aligned_cols=160 Identities=11% Similarity=0.069 Sum_probs=86.9
Q ss_pred ccceEEEEE-Ecc--CCCeEEEEecCCeEEEEEccCcccc------cceeeccccCceEEEEEcCCCcEEEEEcCCCeEE
Q 007229 449 LGFTVTACA-IAP--DGSEAIVGGQNGKLHIYSISGNTLT------EEMVLEKHRGAITVIQYSPDVSMFASADGNREAI 519 (612)
Q Consensus 449 ~~~~i~~~~-~s~--~~~~l~~~~~dg~v~i~d~~~~~~~------~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~ 519 (612)
....|.++. +.+ ++.+++..+.+|.++.-.+..-... ....+... +.+..+........++..+.+|.+.
T Consensus 90 ~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~-d~lv~~~~~~~~~~i~l~T~~G~~i 168 (323)
T 1wp5_A 90 RDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKND-DQVVDVHLTDGMNELFLVTHNGYAL 168 (323)
T ss_dssp TTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTT-CCEEEEEEECSCSEEEEEETTSEEE
T ss_pred CCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCC-CEEEEEEEeCCCCEEEEEeCCCcEE
Confidence 344555543 332 2567899999999999887532210 01123322 4555555544555677778889888
Q ss_pred EEecCCccee--------eecccccccceeEEEecCCCc-EEEEeecCcEEEEEEccCC---C--cceeee---eccccc
Q 007229 520 VWDRVSKEVK--------LNNMLFHTARINCLAWSPSST-MVATGSIDTCVIIYEIGKP---A--SSRITI---KNAHLG 582 (612)
Q Consensus 520 iwd~~~~~~~--------~~~~~~~~~~i~~~~~s~~~~-~l~s~~~d~~i~iwd~~~~---~--~~~~~~---~~~h~~ 582 (612)
.++...-... ...+. ....|.++...+++. .|++.+..|..+..++..- . .+-+.. ++....
T Consensus 169 rf~~~ev~~~gR~a~GV~~i~L~-~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kGv~~~~~~~~~~~ 247 (323)
T 1wp5_A 169 WFDESEVSIVGVRAAGVKGMNLK-EGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVILRELKANPH 247 (323)
T ss_dssp EEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECSCCCSSSCC
T ss_pred EEEHHHCcccCCCCcCEEEEEeC-CCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCCEECeeecCCCCc
Confidence 8876432111 11122 234466665444444 6888888998888887640 0 011111 222222
Q ss_pred CeeeEEEe-cCceEEEccCCCeEEEEEec
Q 007229 583 GVYGVAFM-DDFNVVSSGEDACIRVWRLA 610 (612)
Q Consensus 583 ~v~~~~~~-~~~~l~s~~~d~~i~~w~~~ 610 (612)
.+..+... ++..++..+..|.+...+++
T Consensus 248 ~l~~~~~v~~~~~i~~it~~g~~ir~~~~ 276 (323)
T 1wp5_A 248 RISGFVVAQDSDTIYLQTEKSFIETIKVG 276 (323)
T ss_dssp CEEEEEEECTTCEEEEEETTSCEEEEEGG
T ss_pred eEEEEEEeCCCCeEEEEeCCCeEEEEEhh
Confidence 45544444 45556666667766554543
No 363
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=87.05 E-value=14 Score=31.88 Aligned_cols=159 Identities=9% Similarity=0.030 Sum_probs=92.2
Q ss_pred CceEEEEEEcC-CCCEEEEEeecCCeEEEEeCCCCe------eeecccccccceEEEEECCCCCeEEEEEcCCcEEEEec
Q 007229 147 SRRVLSCEFKP-TRPFRIATCGEDFLVNFYEGPPFK------FKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDG 219 (612)
Q Consensus 147 ~~~v~~~~~~~-~~~~~l~~~~~d~~i~~wd~~~~~------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~ 219 (612)
.+.|..+.... +.+ .++..+.+|.++-..+.... ....++. .+.+..+........++..+..|.+..++.
T Consensus 67 ~e~i~~v~~~~~~~~-~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lke-gD~l~~~~~~~~~~~ill~T~~G~~~r~~~ 144 (276)
T 3no0_A 67 EEKIVGAFIREKFGN-RLLLATKKGYVKKIPLAEFEYKAQGMPIIKLTE-GDEVVSIASSVDETHILLFTKKGRVARFSV 144 (276)
T ss_dssp TCCEEEEEEGGGSCS-EEEEEETTSEEEEEEGGGTTTCSTTEECSCCCT-TCCEEEEEECCSSCEEEEEETTSEEEEEEG
T ss_pred CCEEEEEECCcCCCC-EEEEEeCCCEEEEEEHHHhhhhcCCeEEEecCC-CCEEEEEEEeCCCCEEEEEECCCEEEEEEh
Confidence 44555553321 345 58999999999998865542 1122332 345666666656667888899999888875
Q ss_pred CCCCe-------eeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCC---CCCeeEeeeeccCccccceee
Q 007229 220 KSGEK-------IGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDG---SGGRVIKTFASSTSNAVEDML 289 (612)
Q Consensus 220 ~~~~~-------~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 289 (612)
..-.. ..-+. . .....|.++...+++..++..+..|.++...+.+-. ..++-+..+ .. ....+
T Consensus 145 ~eip~~gR~a~Gv~~i~-L-~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~----~~~lv 217 (276)
T 3no0_A 145 REVPPSTPGARGVQGIK-L-EKNDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GT----KDTLV 217 (276)
T ss_dssp GGSCBCCTTCCCEECCC-C-CTTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CS----SSCEE
T ss_pred hhCCCcCCCCCCEEEEc-c-CCCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cC----CCcEE
Confidence 43111 11111 1 234567777666667788889999999988874321 122223333 11 11122
Q ss_pred eeee-ccCCEEEEEEcCCEEEE--EEcC
Q 007229 290 VGCL-WQNDHLITVSLGGIISI--FSAS 314 (612)
Q Consensus 290 ~~~~-~~~~~~~~~~~~~~i~~--~~~~ 314 (612)
.... ..++.++..+.+|.+.. ++..
T Consensus 218 ~~~~~~~~~~i~~~t~~G~~ir~~~~~~ 245 (276)
T 3no0_A 218 DLIPIKEEVELLITTKNGKAFYDKINQK 245 (276)
T ss_dssp EEEEESSEEEEEEEETTSCEEEEEEEGG
T ss_pred EEEEeCCCCEEEEEcCCCeEEEeeeCHH
Confidence 1111 23557778888888777 7644
No 364
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=85.99 E-value=3.2 Score=40.35 Aligned_cols=58 Identities=14% Similarity=0.056 Sum_probs=46.2
Q ss_pred ceeEEEEccCCCEEEEecC-------------CEEEEEeCCCCceeeEeccC-CCceEEEEECCCCCEEEEe
Q 007229 20 RGILISGNPKTDTILYCNG-------------RSVLIRYLDKPLHVEFYGEH-GYPVTVARYSPNGEWIASA 77 (612)
Q Consensus 20 ~v~~~~~s~d~~~l~~~~~-------------~~i~i~~~~~~~~~~~~~~h-~~~v~~~~~s~d~~~las~ 77 (612)
..-.|+|+|+|+++++-.+ +.+.+.+..+++..+++.++ ...++.++|+||++.|...
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 4578999999996666542 25677788889988888776 5689999999999988765
No 365
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=85.48 E-value=4.7 Score=38.72 Aligned_cols=59 Identities=14% Similarity=0.057 Sum_probs=46.3
Q ss_pred CceeEEEEccCCCEEEEecC-------------CEEEEEeCCCCceeeEeccC-CCceEEEEECCCCCEEEEe
Q 007229 19 GRGILISGNPKTDTILYCNG-------------RSVLIRYLDKPLHVEFYGEH-GYPVTVARYSPNGEWIASA 77 (612)
Q Consensus 19 ~~v~~~~~s~d~~~l~~~~~-------------~~i~i~~~~~~~~~~~~~~h-~~~v~~~~~s~d~~~las~ 77 (612)
.....|+|+++|.+.+.... +.|..++..+++..+.+.+. ...++.++||||++.|..+
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEE
Confidence 46778999999987774432 27888888888888777654 4679999999999988776
No 366
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=85.34 E-value=19 Score=31.78 Aligned_cols=118 Identities=7% Similarity=-0.018 Sum_probs=72.5
Q ss_pred ccceEEEEEEcc---CCCeEEEEecCCeEEEEEccCccc-----ccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEE
Q 007229 449 LGFTVTACAIAP---DGSEAIVGGQNGKLHIYSISGNTL-----TEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIV 520 (612)
Q Consensus 449 ~~~~i~~~~~s~---~~~~l~~~~~dg~v~i~d~~~~~~-----~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i 520 (612)
....+.++..-+ +..+++..+.+|.++...+..-.. .....+.. .+.+..+....+...++..+.+|.+..
T Consensus 98 ~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~~~i~l~T~~G~~~r 176 (312)
T 1suu_A 98 DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKDEKVICLSKKGSAFI 176 (312)
T ss_dssp TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTTCEEEEEETTSEEEE
T ss_pred CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCCCEEEEEeCCCcEEE
Confidence 344555554433 467788899999999888753211 11223333 445555555555567888888999998
Q ss_pred EecCCccee--------eecccccccceeEEEecCCCcEEEEeecCcEEEEEEccC
Q 007229 521 WDRVSKEVK--------LNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGK 568 (612)
Q Consensus 521 wd~~~~~~~--------~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~ 568 (612)
+....-... ...+. ....|.++..-+++..|++.+..|..+..++..
T Consensus 177 ~~~~ev~~~gR~~~Gv~~i~L~-~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 177 FNSRDVRLTNRGTQGVCGMKLK-EGDLFVKVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp EEGGGSCBCCTTBCCEECCCCC-TTCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred EEHHHccccCCCCCCeEeEEeC-CCCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence 877542111 11122 234556665555566788888999999998864
No 367
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=83.54 E-value=20 Score=37.70 Aligned_cols=35 Identities=0% Similarity=0.004 Sum_probs=30.9
Q ss_pred CceEEEEECCCCCEEEEeeCcCeEEEeecCCCcee
Q 007229 60 YPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVL 94 (612)
Q Consensus 60 ~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~ 94 (612)
..|.+++..++..++++-+.|+++|+|++.+++++
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v 270 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCV 270 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeE
Confidence 35778888899999999999999999999999853
No 368
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=81.17 E-value=32 Score=31.27 Aligned_cols=74 Identities=12% Similarity=0.228 Sum_probs=45.8
Q ss_pred ceEEEEEEccC----CCeEEEEecCCeEEEEEccCc-----ccccceeeccccC---ceEEEEEc-CCCcEEEEEcCCCe
Q 007229 451 FTVTACAIAPD----GSEAIVGGQNGKLHIYSISGN-----TLTEEMVLEKHRG---AITVIQYS-PDVSMFASADGNRE 517 (612)
Q Consensus 451 ~~i~~~~~s~~----~~~l~~~~~dg~v~i~d~~~~-----~~~~~~~~~~~~~---~i~~~~~s-~~~~~l~~~~~d~~ 517 (612)
..+..++++|+ ++.|......+ -++|.+.+. .........+..+ .-..+++. .+|.++++--+...
T Consensus 220 ~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~a 298 (381)
T 3q6k_A 220 AGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQ 298 (381)
T ss_dssp CCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSE
T ss_pred cCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCe
Confidence 46889999998 77777766554 244444322 1111112222232 23346675 67888888888899
Q ss_pred EEEEecCC
Q 007229 518 AIVWDRVS 525 (612)
Q Consensus 518 i~iwd~~~ 525 (612)
|..|+..+
T Consensus 299 I~~w~~~~ 306 (381)
T 3q6k_A 299 VSCWNTQK 306 (381)
T ss_dssp EEEEETTS
T ss_pred EEEEeCCC
Confidence 99999876
No 369
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=80.41 E-value=35 Score=31.29 Aligned_cols=212 Identities=12% Similarity=-0.020 Sum_probs=99.9
Q ss_pred EEEEecCCEEEEEeCCC-CceeeEe--ccCCCceEEEEECC--CCCEEEEeeCcC----eEEEeecCCCceeeeeee---
Q 007229 32 TILYCNGRSVLIRYLDK-PLHVEFY--GEHGYPVTVARYSP--NGEWIASADVSG----SVRIWGTHNGFVLKNEFK--- 99 (612)
Q Consensus 32 ~l~~~~~~~i~i~~~~~-~~~~~~~--~~h~~~v~~~~~s~--d~~~las~~~d~----~i~iwd~~~~~~~~~~~~--- 99 (612)
.|.++...-+.+++... +..-..+ ......|.+|++.| ++.+.|.+. .| .|...+ ..++. ...+.
T Consensus 24 ~l~vgt~~Gl~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~-~g~~g~gl~~s~-D~G~t-W~~~~~~~ 100 (394)
T 3b7f_A 24 MLLVATIKGAWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAAR-TGHLGPTVFRSD-DGGGN-WTEATRPP 100 (394)
T ss_dssp EEEEEETTEEEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEE-C--CCEEEEEES-STTSC-CEECSBCC
T ss_pred EEEEEecCceEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEec-CCCCCccEEEeC-CCCCC-ceECCccc
Confidence 45555544466665542 3322222 12346799999999 555555543 33 333321 22221 11111
Q ss_pred ---e--------cCCCeEEEEECCC--CCEEEEEeCCCCeeeEEEEEecC-Cceeeeec-------------------cC
Q 007229 100 ---V--------LSGRIDDLQWSPD--GLRIVACGDGKGKSFVRAFMWDS-GTTVGDFD-------------------GH 146 (612)
Q Consensus 100 ---~--------~~~~i~~~~~s~~--~~~l~~~~~~~~~~~i~i~~~~~-~~~~~~~~-------------------~~ 146 (612)
. ....|.++++.|. ...|.+++..+ .|+..+. ++.-..+. ..
T Consensus 101 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~g-----gl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~ 175 (394)
T 3b7f_A 101 AFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQ-----GLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPD 175 (394)
T ss_dssp CCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETT-----EEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CC
T ss_pred cCCCcccccccccccceeEEEeCCCCCCCEEEEEecCC-----cEEEEcCCCCCeEECcCccCCccccccccccccCCCC
Confidence 0 1125778999872 44555555443 2555542 33222221 12
Q ss_pred CceEEEEEEcCCCCEEEEEeecCCeEEEEeC--CCCeeeec-ccc-c--------ccceEEEEECCC-CCeEEEEEcCCc
Q 007229 147 SRRVLSCEFKPTRPFRIATCGEDFLVNFYEG--PPFKFKLS-HRE-H--------SNFVNCIRFSPD-GSKLISVSSDRK 213 (612)
Q Consensus 147 ~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~--~~~~~~~~-~~~-~--------~~~v~~~~~s~~-~~~l~~~~~dg~ 213 (612)
...+.+|.+.|..+..+..+..++.|...+- ++.+.... +.. + ...+.++++.|+ ...|+.+...+
T Consensus 176 ~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g- 254 (394)
T 3b7f_A 176 GPKMHSILVDPRDPKHLYIGMSSGGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG- 254 (394)
T ss_dssp CCEEEEEEECTTCTTCEEEEEETBEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-
T ss_pred CCceeEEEECCCCCCEEEEEECCCCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-
Confidence 3468899999843213555544444444432 12222211 100 0 134889999986 35666666444
Q ss_pred EEEEecCCCCeeeeeeccCCc--cccEEEEEEec-CCCEEEEE
Q 007229 214 GLIYDGKSGEKIGEFSSEDGH--HGSIYAVSWSP-DGKKVLTV 253 (612)
Q Consensus 214 i~vwd~~~~~~~~~~~~~~~~--~~~v~~i~~~~-~~~~l~~~ 253 (612)
|...+ ..++....+...... ...+..++++| +...+.++
T Consensus 255 l~~s~-D~G~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~ 296 (394)
T 3b7f_A 255 IYRMD-RREGVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVF 296 (394)
T ss_dssp EEEEE-TTTTEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEE
T ss_pred EEEeC-CCCCcceECCCCCCCCCccceEEEEECCCCCCEEEEE
Confidence 54444 334444444210011 13456788876 33445544
No 370
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=77.89 E-value=41 Score=30.54 Aligned_cols=158 Identities=10% Similarity=0.066 Sum_probs=85.3
Q ss_pred ccceEEEEEEcc---CCCeEEEEecCCeEEEEEccCccc-----ccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEE
Q 007229 449 LGFTVTACAIAP---DGSEAIVGGQNGKLHIYSISGNTL-----TEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIV 520 (612)
Q Consensus 449 ~~~~i~~~~~s~---~~~~l~~~~~dg~v~i~d~~~~~~-----~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i 520 (612)
....|.++..-+ +..+|+.++.+|.++.-.+..-.. .....+.. .+.+..+....+...++..+.+|.+..
T Consensus 97 ~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~-~d~lv~v~~~~~~~~i~l~T~~G~~ir 175 (370)
T 3l6v_A 97 SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDE-GDALVGVALTDGDRDVLLFASNGKTVR 175 (370)
T ss_dssp TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCT-TCCEEEEEEECSCCEEEEEETTSEEEE
T ss_pred CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCC-CCEEEEEEEeCCCceEEEEeCCCeEEE
Confidence 344555554432 456899999999999988753221 01122333 344444555455556777778888888
Q ss_pred EecCCccee--------eecccccccceeEEEecC-----------------------------------CCcEEEEeec
Q 007229 521 WDRVSKEVK--------LNNMLFHTARINCLAWSP-----------------------------------SSTMVATGSI 557 (612)
Q Consensus 521 wd~~~~~~~--------~~~~~~~~~~i~~~~~s~-----------------------------------~~~~l~s~~~ 557 (612)
++...-... ...+. ....|.++...+ ++..|++.+.
T Consensus 176 f~~~~v~~~gR~a~GV~~i~L~-~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~~~~~~~~~~il~vTe 254 (370)
T 3l6v_A 176 FGESTVRSMGRTATGVRGIRLA-KGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVIDVADNGDVAYILTATE 254 (370)
T ss_dssp EEGGGSCBCCTTCCCEECCCCC-TTCCEEEEEEECCC-----------------------------------CEEEEEET
T ss_pred EEccccCccCCCCCCeeeEEeC-CCCEEEEEEEeccccccccccccccccccccccccccccccccccccCCceEEEeeC
Confidence 875432211 01121 234455554443 4457889999
Q ss_pred CcEEEEEEccCCC-----cceee--eecccccCeeeEEEe-cCceEEEccCCCeEEEEE
Q 007229 558 DTCVIIYEIGKPA-----SSRIT--IKNAHLGGVYGVAFM-DDFNVVSSGEDACIRVWR 608 (612)
Q Consensus 558 d~~i~iwd~~~~~-----~~~~~--~~~~h~~~v~~~~~~-~~~~l~s~~~d~~i~~w~ 608 (612)
.|..+...+..-. .+-+. .+....+.+..+... ++..++..+..|.+.-..
T Consensus 255 ~G~gKrt~~~e~~~~~Rg~kGv~~~k~~~~~g~lv~~~~v~~~d~i~liT~~G~~iR~~ 313 (370)
T 3l6v_A 255 NGYGKRTPLAEYPRKGRGTQGVIGIQTTERNGKLVRAVLLGSTDEVMLISDGGTLVRTR 313 (370)
T ss_dssp TSEEEEEEGGGSCCBCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEETTCCEEEEE
T ss_pred CCCEEEEEHHHhcccccCCcceEEEEecCCCCcEEEEEEeCCCceEEEEcCCCeEEEee
Confidence 9999998876410 01111 122233456665555 555555555566554433
No 371
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=77.73 E-value=34 Score=29.51 Aligned_cols=181 Identities=8% Similarity=-0.004 Sum_probs=104.0
Q ss_pred cEEEEEeeccEEEeec-----c--cceeeecccceEEEEEEcc-CCCeEEEEecCCeEEEEEccCccc----ccceeecc
Q 007229 425 ELALVSTESGVILLDS-----L--KVMSKIDLGFTVTACAIAP-DGSEAIVGGQNGKLHIYSISGNTL----TEEMVLEK 492 (612)
Q Consensus 425 ~~~~~~~~~~~~~~~~-----~--~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~v~i~d~~~~~~----~~~~~~~~ 492 (612)
.+++++..+.++.... . ..+ +.....|..+.... +..+++..+.+|.++...+..-.. .....+..
T Consensus 37 ~ll~fT~~G~v~~~~~~~lp~~~~~~l--l~~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lke 114 (276)
T 3no0_A 37 GLFLVSNRGRVYWIAGSQALQGSKVSL--KSREEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLTE 114 (276)
T ss_dssp CEEEEETTSEEEEECSHHHHTSEECCC--SSTTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCCT
T ss_pred EEEEEcCCCeEEEEEhhhCccCccccc--CCCCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecCC
Confidence 5556666665555431 1 112 44455666665422 567899999999999998764320 00122332
Q ss_pred ccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCccee--------eecccccccceeEEEecCCCcEEEEeecCcEEEEE
Q 007229 493 HRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVK--------LNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIY 564 (612)
Q Consensus 493 ~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~--------~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iw 564 (612)
...+..+........++..+.+|.+..++...-... ...+. ....|.++...+++..|+..+..|.++..
T Consensus 115 -gD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~-~~d~vv~~~~~~~~~~ll~~T~~G~~kr~ 192 (276)
T 3no0_A 115 -GDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLE-KNDETSGLRIWNGEPYLLVITAKGRVKKI 192 (276)
T ss_dssp -TCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEEEESSCSEEEEEETTSCEEEE
T ss_pred -CCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccC-CCCEEEEEEEeCCCCEEEEEeCCCcEEEe
Confidence 344555555555667888888999888875332111 01122 23556666555666788888999999998
Q ss_pred EccCCC-----cceeeeecccccCeeeEEEe-cCceEEEccCCCeEEE--EEec
Q 007229 565 EIGKPA-----SSRITIKNAHLGGVYGVAFM-DDFNVVSSGEDACIRV--WRLA 610 (612)
Q Consensus 565 d~~~~~-----~~~~~~~~~h~~~v~~~~~~-~~~~l~s~~~d~~i~~--w~~~ 610 (612)
.+..-. .+-+..+ ...+.+..+... ++..++..+.+|.+.. ++++
T Consensus 193 ~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~ 245 (276)
T 3no0_A 193 SHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQK 245 (276)
T ss_dssp EGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGG
T ss_pred EHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHH
Confidence 875410 0112222 234456655544 4456666777777766 6553
No 372
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=76.50 E-value=48 Score=30.63 Aligned_cols=283 Identities=11% Similarity=0.051 Sum_probs=135.5
Q ss_pred eeeeeeccCCEEEEEEcCCEEEEEEcCCCCCC----------ceeecC-cccceeEEEEEecCCcEEEEEecC-CcEEEE
Q 007229 288 MLVGCLWQNDHLITVSLGGIISIFSASNLDKA----------PLSFSG-HVKNVSTLTALKISQQTILSSSYD-GAIIKW 355 (612)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----------~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~d-g~i~~w 355 (612)
.+..+.......++...+|.+..|-.....+. ...+.. ....|..++.- ....+.-..+ +.|+.|
T Consensus 17 ~v~~ia~G~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G---~~ht~al~~~gg~v~~w 93 (406)
T 4d9s_A 17 KVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCG---ADHTVAYSQSGMEVYSW 93 (406)
T ss_dssp CEEEEEECSSEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEEC---SSEEEEEETTTTEEEEE
T ss_pred ceEEEecCCCeEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeC---cceEEEEECCCCEEEEE
Confidence 44455555777788888999999964432211 011111 12245555544 2333333444 589999
Q ss_pred EcCCc------------eeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCC
Q 007229 356 IRGVG------------YSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSS 423 (612)
Q Consensus 356 d~~~~------------~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (612)
=.... .+..........|..++.-....+....+|.++.|-.......-...... ...|
T Consensus 94 G~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~-------~~~p-- 164 (406)
T 4d9s_A 94 GWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTED-------SLVP-- 164 (406)
T ss_dssp ECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCC-------EEEE--
T ss_pred cCCCCcCCCCCCCCccccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCCCCC-------cccc--
Confidence 43221 01111111334688888877777778889999999765433220000000 0000
Q ss_pred CcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCc-cc---------ccceeeccc
Q 007229 424 PELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGN-TL---------TEEMVLEKH 493 (612)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~-~~---------~~~~~~~~~ 493 (612)
..+..+ ....|..++.. ....+.-..+|.|+.|-.... ++ .+.......
T Consensus 165 ------------------~~v~~~-~~~~i~~va~G--~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~ 223 (406)
T 4d9s_A 165 ------------------QKIQAF-EGIRIKMVAAG--AEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTG 223 (406)
T ss_dssp ------------------EECGGG-TTCCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCST
T ss_pred ------------------eEeccc-CCCcEEEEecC--CCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccC
Confidence 000000 11234444443 334455567888888854321 11 011111111
Q ss_pred cCceEEEEEcCCCcEEEEEcCCCeEEEEecCCccee----------eeccc-ccccceeEEEecCCCcEEEEeecCcEEE
Q 007229 494 RGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVK----------LNNML-FHTARINCLAWSPSSTMVATGSIDTCVI 562 (612)
Q Consensus 494 ~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~----------~~~~~-~~~~~i~~~~~s~~~~~l~s~~~d~~i~ 562 (612)
...|..++.... ..+.-..+|.|+.|-......+ ..... .....|..++-.. .+.+.-..||.|+
T Consensus 224 ~~~i~~va~G~~--ht~~l~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G~--~hs~alt~~G~v~ 299 (406)
T 4d9s_A 224 GEKMSMVACGWR--HTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGW--RHTMALTSDGKLY 299 (406)
T ss_dssp TCCEEEEEECSS--EEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECS--SEEEEEETTSCEE
T ss_pred CceEEEEEECCC--cEEEEcCCCCEEEeeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEecC--CEEEEEcCCCeEE
Confidence 234666555433 4444457888999964332111 00011 1122355555432 3444446789999
Q ss_pred EEEccCCCcce-----------eeeecccccCeeeEEEecCceEEEccCCCeEEEEEe
Q 007229 563 IYEIGKPASSR-----------ITIKNAHLGGVYGVAFMDDFNVVSSGEDACIRVWRL 609 (612)
Q Consensus 563 iwd~~~~~~~~-----------~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~w~~ 609 (612)
.|=....+ ++ ..........|..++.- ....+....||.|..|=-
T Consensus 300 ~wG~n~~G-qLG~g~~~~~~~p~~v~~~~~~~v~~va~G-~~hs~alt~~G~v~~wG~ 355 (406)
T 4d9s_A 300 GWGWNKFG-QVGVGNNLDQCSPVQVRFPDDQKVVQVSCG-WRHTLAVTERNNVFAWGR 355 (406)
T ss_dssp EEECCTTS-TTCSSSSSCEEEEEEECCGGGCCEEEEEEC-SSEEEEEETTSCEEEEEC
T ss_pred EeeCCCCC-CCCCCCCCCCccCEEEeccCCCcEEEEEeC-CCeEEEEeCCCCEEEecC
Confidence 99765422 11 11111122346555543 334444457888998853
No 373
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=74.81 E-value=9.6 Score=37.14 Aligned_cols=59 Identities=12% Similarity=0.214 Sum_probs=40.9
Q ss_pred eEEEEEcCCCcEEEEEcCC------------CeEEEEecCCcceeeecccccccceeEEEecCCCcEEEEe
Q 007229 497 ITVIQYSPDVSMFASADGN------------REAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATG 555 (612)
Q Consensus 497 i~~~~~s~~~~~l~~~~~d------------~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~ 555 (612)
.-.|+|+|.|.+++.-+.+ ..+.+.+..+++...-.......+++.++|+||++.|.+.
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 4668999999977765543 2455666666765422222345789999999999988765
No 374
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=72.01 E-value=52 Score=28.99 Aligned_cols=193 Identities=10% Similarity=0.103 Sum_probs=104.2
Q ss_pred CCCCCEEEEeeCcCeEEEeecCCCceeee------eee-ecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec-----
Q 007229 68 SPNGEWIASADVSGSVRIWGTHNGFVLKN------EFK-VLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD----- 135 (612)
Q Consensus 68 s~d~~~las~~~d~~i~iwd~~~~~~~~~------~~~-~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~----- 135 (612)
-|+..++++.+.+|.|+--.+..-+.... .+. .....+..+........++..+..+....+.++.+.
T Consensus 5 i~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~ 84 (312)
T 1suu_A 5 MQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRA 84 (312)
T ss_dssp ---CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC----
T ss_pred cCCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCcc
Confidence 35667888889999998876654321110 001 122344444444455566666666522111111111
Q ss_pred -CCcee---eeeccCCceEEEEEEcC---CCCEEEEEeecCCeEEEEeCCCC-------eeeecccccccceEEEEECCC
Q 007229 136 -SGTTV---GDFDGHSRRVLSCEFKP---TRPFRIATCGEDFLVNFYEGPPF-------KFKLSHREHSNFVNCIRFSPD 201 (612)
Q Consensus 136 -~~~~~---~~~~~~~~~v~~~~~~~---~~~~~l~~~~~d~~i~~wd~~~~-------~~~~~~~~~~~~v~~~~~s~~ 201 (612)
.|.++ -.+.. .+.|..+...+ +..+ ++..+..|.++.-.+... .....+.. .+.+..+....+
T Consensus 85 ~~G~~i~~~l~l~~-~e~i~~~~~~~~~~~~~~-ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~ 161 (312)
T 1suu_A 85 SKGQNISELINLGD-QEEILTIKNSKDLTDDAY-LLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFK 161 (312)
T ss_dssp ---CBGGGTSCCCT-TCCEEEEEEESCCCTTCE-EEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECT
T ss_pred CCCcChhhccCCCC-CCEEEEEEEeccCCCCCE-EEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCC
Confidence 11111 11222 23444443332 3453 778899999998876432 22223443 455666555555
Q ss_pred CCeEEEEEcCCcEEEEecCCCCe-------eeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEee
Q 007229 202 GSKLISVSSDRKGLIYDGKSGEK-------IGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEIL 265 (612)
Q Consensus 202 ~~~l~~~~~dg~i~vwd~~~~~~-------~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~ 265 (612)
+..++..+.+|.+..+....-.. +..+. . .....|.++...+++..+++.+..|..+...+.
T Consensus 162 ~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~-L-~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~ 230 (312)
T 1suu_A 162 DEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMK-L-KEGDLFVKVLSVKENPYLLIVSENGYGKRLNMS 230 (312)
T ss_dssp TCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCC-C-CTTCCEEEEEECTTCSEEEEEETTSEEEEEEGG
T ss_pred CCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEE-e-CCCCEEEEEEEECCCCeEEEEECCCceEEEEHH
Confidence 56788889999999988754211 11111 1 234566776666566778888899999988884
No 375
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=71.82 E-value=7.7 Score=41.91 Aligned_cols=35 Identities=0% Similarity=0.004 Sum_probs=29.8
Q ss_pred CceEEEEECCCCCEEEEeeCcCeEEEeecCCCcee
Q 007229 60 YPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVL 94 (612)
Q Consensus 60 ~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~ 94 (612)
..+.+++..++.++|++-+.|+++|||++.+++++
T Consensus 238 ~~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v 272 (1139)
T 4fhn_B 238 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCV 272 (1139)
T ss_dssp TCBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEE
T ss_pred ceeEEeeccCCccEEEEEeCCCEEEEEECCCCCeE
Confidence 35566777888999999999999999999999853
No 376
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=71.29 E-value=19 Score=34.77 Aligned_cols=60 Identities=15% Similarity=0.283 Sum_probs=41.7
Q ss_pred ceEEEEEcCCCcEEEEEcC------------CCeEEEEecCCcceeeecccc-cccceeEEEecCCCcEEEEee
Q 007229 496 AITVIQYSPDVSMFASADG------------NREAIVWDRVSKEVKLNNMLF-HTARINCLAWSPSSTMVATGS 556 (612)
Q Consensus 496 ~i~~~~~s~~~~~l~~~~~------------d~~i~iwd~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~s~~ 556 (612)
....|.|.++|.+.+..+. ...+..++..+++.. ..+.. ....++.++|+||++.|.++-
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~-~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIR-RFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEE-EEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEE-EEEeCCCCccccCCEECCCCCEEEEEE
Confidence 4678999999988774432 225677777777764 22332 346789999999999887663
No 377
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=71.24 E-value=61 Score=29.48 Aligned_cols=155 Identities=6% Similarity=-0.027 Sum_probs=95.4
Q ss_pred CceeEEEEccCCCEEEEec----------------CCEEEEEeCCCC--ceeeEecc------CCCceEEEEEC---CC-
Q 007229 19 GRGILISGNPKTDTILYCN----------------GRSVLIRYLDKP--LHVEFYGE------HGYPVTVARYS---PN- 70 (612)
Q Consensus 19 ~~v~~~~~s~d~~~l~~~~----------------~~~i~i~~~~~~--~~~~~~~~------h~~~v~~~~~s---~d- 70 (612)
-+|..+...+++++=+.=. .-.|.+||+.+. +.++.+.- ....+..+++. |+
T Consensus 87 vsV~~v~iD~~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~ 166 (381)
T 3q6k_A 87 TSIYQPVIDDCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKG 166 (381)
T ss_dssp SCEEEEEECTTCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTT
T ss_pred EEeeEEEEcCCCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCC
Confidence 4778888888776544422 127899999999 88877542 23457788887 22
Q ss_pred ---CCEEEEee-CcCeEEEeecCCCceeeeeee----e--------------cCCCeEEEEECCC----CCEEEEEeCCC
Q 007229 71 ---GEWIASAD-VSGSVRIWGTHNGFVLKNEFK----V--------------LSGRIDDLQWSPD----GLRIVACGDGK 124 (612)
Q Consensus 71 ---~~~las~~-~d~~i~iwd~~~~~~~~~~~~----~--------------~~~~i~~~~~s~~----~~~l~~~~~~~ 124 (612)
+.++..+. ..+-|.|+|+.+++.-+ .+. . -...+..++++|+ ++.|....-.+
T Consensus 167 ~c~~~~aYItD~~~~gLIVydl~~~~swR-v~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss 245 (381)
T 3q6k_A 167 DCSETFVYITNFLRGALFIYDHKKQDSWN-VTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA 245 (381)
T ss_dssp TSCSEEEEEEETTTTEEEEEETTTTEEEE-EECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC
T ss_pred CCCccEEEEEcCCCCcEEEEECCCCcEEE-EccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC
Confidence 33433333 46789999999887422 111 0 0247889999998 78887776555
Q ss_pred CeeeEEEEEec-----CC---ceeeeeccC--CceEEEEEEc-CCCCEEEEEeecCCeEEEEeCCC
Q 007229 125 GKSFVRAFMWD-----SG---TTVGDFDGH--SRRVLSCEFK-PTRPFRIATCGEDFLVNFYEGPP 179 (612)
Q Consensus 125 ~~~~i~i~~~~-----~~---~~~~~~~~~--~~~v~~~~~~-~~~~~~l~~~~~d~~i~~wd~~~ 179 (612)
. +++... .. ..+..+... ...-..+++. .+|. ++++--....|..|+..+
T Consensus 246 ~----~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~-ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 246 I----KVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKV-IFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp S----EEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCE-EEEEESSSSEEEEEETTS
T ss_pred C----cEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCe-EEEEeccCCeEEEEeCCC
Confidence 3 244433 11 122222111 1233456675 4554 677777888999999875
No 378
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=70.96 E-value=10 Score=41.05 Aligned_cols=38 Identities=16% Similarity=0.122 Sum_probs=32.4
Q ss_pred ceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeee
Q 007229 192 FVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFS 229 (612)
Q Consensus 192 ~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 229 (612)
.+.+++..++..++++.+.|+++|+|++.+++++.+..
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 45566677788899999999999999999999988764
No 379
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=69.73 E-value=25 Score=34.96 Aligned_cols=82 Identities=10% Similarity=0.171 Sum_probs=49.9
Q ss_pred eeccCCCCCCCceeEEEEccCCCEEEEecCCE-EEEEeCCCCce-------------e-eEecc-----CCCceEEEEEC
Q 007229 9 TYACAPSTERGRGILISGNPKTDTILYCNGRS-VLIRYLDKPLH-------------V-EFYGE-----HGYPVTVARYS 68 (612)
Q Consensus 9 ~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~-i~i~~~~~~~~-------------~-~~~~~-----h~~~v~~~~~s 68 (612)
++.|.+-+.|.....++.+++. .+++-.||. +++-.-+.... + ..+.+ ....|.++.+
T Consensus 152 ~~~Py~F~~R~Ph~L~avs~~~-liVsL~DGGLLrL~r~~~~d~~~~~Fnd~s~l~SL~~lf~~~~~~~~~~~Is~~~~- 229 (729)
T 3f7f_A 152 LQNPYDFTVRVPHFLFYVSPQF-SVVFLEDGGLLGLKKVDGVHYEPLLFNDNSYLKCLTRFFSRSSKSDYDSVISCKLF- 229 (729)
T ss_dssp CCCCSCTTTSCEEEEEECSSSB-EEEEETTSCEECCEESSSSCEECCCCCCCGGGGGGSTTCCTTCSSCCCCEEEEEEE-
T ss_pred eecCCcccccCCcEEEEECCCe-EEEEEcCCCEEEEEeccCCCcceeeecCCchhhhhHHhhcCCCCCCcCceEEEecc-
Confidence 4455555677777788888776 666666553 33322111110 0 01121 1224555554
Q ss_pred CCCCEEEEeeCcCeEEEeecCCCce
Q 007229 69 PNGEWIASADVSGSVRIWGTHNGFV 93 (612)
Q Consensus 69 ~d~~~las~~~d~~i~iwd~~~~~~ 93 (612)
+..+|++-+.|+++|+|++.+++.
T Consensus 230 -~~~fLftL~~Dh~LRiWsL~t~~l 253 (729)
T 3f7f_A 230 -HERYLIVLTQNCHLKIWDLTSFTL 253 (729)
T ss_dssp -TTTEEEEEETTCEEEEEETTTTEE
T ss_pred -CCcEEEEEEcCCeEEEEEcCCCce
Confidence 467999999999999999999974
No 380
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=67.41 E-value=84 Score=29.61 Aligned_cols=54 Identities=15% Similarity=0.101 Sum_probs=34.4
Q ss_pred CceEEEEECCCCC-EEEEeeCcCeEEEeecCCCc---eeee---eee-----ecCCCeEEEEECCC
Q 007229 60 YPVTVARYSPNGE-WIASADVSGSVRIWGTHNGF---VLKN---EFK-----VLSGRIDDLQWSPD 113 (612)
Q Consensus 60 ~~v~~~~~s~d~~-~las~~~d~~i~iwd~~~~~---~~~~---~~~-----~~~~~i~~~~~s~~ 113 (612)
..-..|+|.|||. .|..+...|.|++++..... .+.. .+. ........|+|+|+
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 3456899999996 44445678999999754321 1110 011 11457889999996
No 381
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=51.10 E-value=2e+02 Score=28.80 Aligned_cols=36 Identities=11% Similarity=0.385 Sum_probs=29.8
Q ss_pred EEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeec
Q 007229 238 IYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFAS 279 (612)
Q Consensus 238 v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 279 (612)
|.++.+ +..++++.+.|.++|+|++ .+++++.....
T Consensus 224 Is~~~~--~~~fLftL~~Dh~LRiWsL----~t~~lv~t~DL 259 (729)
T 3f7f_A 224 ISCKLF--HERYLIVLTQNCHLKIWDL----TSFTLIQDYDM 259 (729)
T ss_dssp EEEEEE--TTTEEEEEETTCEEEEEET----TTTEEEEEEET
T ss_pred EEEecc--CCcEEEEEEcCCeEEEEEc----CCCceEEeecc
Confidence 444433 5779999999999999999 99999888877
No 382
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=49.57 E-value=2.2e+02 Score=28.83 Aligned_cols=191 Identities=10% Similarity=-0.036 Sum_probs=86.0
Q ss_pred CceEEEEECCCC-CEEEEeeCcCeEEEeecCCCceeeeeeeec-------CCCeEEEEECCC-CCEEEEEeCC-C---Ce
Q 007229 60 YPVTVARYSPNG-EWIASADVSGSVRIWGTHNGFVLKNEFKVL-------SGRIDDLQWSPD-GLRIVACGDG-K---GK 126 (612)
Q Consensus 60 ~~v~~~~~s~d~-~~las~~~d~~i~iwd~~~~~~~~~~~~~~-------~~~i~~~~~s~~-~~~l~~~~~~-~---~~ 126 (612)
+.|..|+++|.. ..+..+...+.|..++-. ++ ....+..+ ...|.++++.|. ...++++... . ..
T Consensus 23 g~i~~i~~~p~~~~~~~~~~~~ggv~rS~D~-G~-tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~ 100 (737)
T 2cn3_A 23 GFMPGIVFNETEKDLIYARAAIGGAYRWDPS-TE-TWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLP 100 (737)
T ss_dssp SCCCEEEECSSSTTCEEEECSSSCEEEEETT-TT-EEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSC
T ss_pred ceeeEEEECCCCCCEEEEEecCCcEEEeCCC-CC-CEEECcCccCcccccCCCcceEEeCCCCCCEEEEEeccccccccc
Confidence 389999999963 344445545554444322 22 22222211 246899999983 3344433321 0 00
Q ss_pred eeEEEEEe-cCCceeeeec-cC--------CceEEEEEEcCCCCEEEEEeecC-CeEE-EEe-CCCCeeeecccc-----
Q 007229 127 SFVRAFMW-DSGTTVGDFD-GH--------SRRVLSCEFKPTRPFRIATCGED-FLVN-FYE-GPPFKFKLSHRE----- 188 (612)
Q Consensus 127 ~~i~i~~~-~~~~~~~~~~-~~--------~~~v~~~~~~~~~~~~l~~~~~d-~~i~-~wd-~~~~~~~~~~~~----- 188 (612)
....|+.- |.|+.-..+. .. ...+..++++|..+..+..+... +.|. --| -.+.+.+..+..
T Consensus 101 ~~~~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~~~g~gl~~S~DgG~tW~~~~~~~~~~~~~ 180 (737)
T 2cn3_A 101 NMGAILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGTRCGNGLWRSTDYGVTWSKVESFPNPGTYI 180 (737)
T ss_dssp CCCEEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEECSTTCCEEEESSTTSSCEECTTCCCCCCCB
T ss_pred CCccEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEeeccCCcEEEeCCCCcceecccCCCCCcccc
Confidence 00123332 3333211111 00 11246789988654345555532 2222 112 122333222211
Q ss_pred ---------cccceEEEEECCCC-------CeEEEEEcCCcEEEEecCC-CCeeeeeeccCCccccEEEEEEecCCCEEE
Q 007229 189 ---------HSNFVNCIRFSPDG-------SKLISVSSDRKGLIYDGKS-GEKIGEFSSEDGHHGSIYAVSWSPDGKKVL 251 (612)
Q Consensus 189 ---------~~~~v~~~~~s~~~-------~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~ 251 (612)
....+..+.++|.. ..++++..++.-.+|.-.+ |+.-..+... ........+.++|++.+.+
T Consensus 181 ~~p~~~~~~~~~g~~~v~~dp~~~~~~~~~~~v~~~~~~~~~~v~~S~DgG~tW~~~~~~-p~~~~~~~~~~~~~~~l~~ 259 (737)
T 2cn3_A 181 YDPNFDYTKDIIGVVWVVFDKSSSTPGNPTKTIYVGVADKNESIYRSTDGGVTWKAVPGQ-PKGLLPHHGVLASNGMLYI 259 (737)
T ss_dssp SCTTSTTTCSBCCEEEEEECGGGSCTTSCCSCEEEEESCSSCCEEEESSTTSCCEECTTC-CCSSEEEEEEECTTSEEEE
T ss_pred cCcccccccCCCCEEEEEcCCCCcccCCCCCEEEEEecCCCccEEEEcCCCCceEECCCC-CCcccceEEEECCCCeEEE
Confidence 12347788888743 2566666555333454333 4443333110 1111224556777666555
Q ss_pred EE
Q 007229 252 TV 253 (612)
Q Consensus 252 ~~ 253 (612)
+.
T Consensus 260 ~~ 261 (737)
T 2cn3_A 260 TY 261 (737)
T ss_dssp EE
T ss_pred Ee
Confidence 54
No 383
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=40.32 E-value=58 Score=31.43 Aligned_cols=69 Identities=20% Similarity=0.156 Sum_probs=43.4
Q ss_pred eEEEEEEcc--CCCeEEEEecCCeEEEEEccCcc----cccceeeccccCceE-EEEEcCCCcEEEEEcCCCeEEE
Q 007229 452 TVTACAIAP--DGSEAIVGGQNGKLHIYSISGNT----LTEEMVLEKHRGAIT-VIQYSPDVSMFASADGNREAIV 520 (612)
Q Consensus 452 ~i~~~~~s~--~~~~l~~~~~dg~v~i~d~~~~~----~~~~~~~~~~~~~i~-~~~~s~~~~~l~~~~~d~~i~i 520 (612)
..++++... +...++.|+.+|.|.-..+.... ......+.....+|. .|.++++..+|..++.++.++|
T Consensus 401 ~lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~~~~~pv~~~l~~~~~~~~Lyv~s~~~V~kv 476 (539)
T 3al9_A 401 RLTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRV 476 (539)
T ss_dssp CEEEEEEEEETTEEEEEEEETTSEEEEEEEEETTTEEEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEEE
T ss_pred ceEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCccceeEEEEEeecCCCccccceEEccCCCeEEEEecccccee
Confidence 355555554 33457889999987766554321 111122223356785 8999999999999987765544
No 384
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=34.44 E-value=1e+02 Score=29.34 Aligned_cols=69 Identities=19% Similarity=0.213 Sum_probs=42.2
Q ss_pred eEEEEEEcc----CC--CeEEEEecCCeEEEEEcc-Ccc-------cccceeeccccCceEEEEEcCCCcEEEEEcCCCe
Q 007229 452 TVTACAIAP----DG--SEAIVGGQNGKLHIYSIS-GNT-------LTEEMVLEKHRGAITVIQYSPDVSMFASADGNRE 517 (612)
Q Consensus 452 ~i~~~~~s~----~~--~~l~~~~~dg~v~i~d~~-~~~-------~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~ 517 (612)
..++++... ++ ..++.|+.+|.|.-.-+. .+. ......+.....+|..|.++++..+|..++.++.
T Consensus 405 ~lT~IaVd~v~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V 484 (495)
T 1q47_A 405 QFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGV 484 (495)
T ss_dssp CEEEEEEEEEECSSCEEEEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCE
T ss_pred ceEEEEEEEEccCCCcEEEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeE
Confidence 355555542 23 357789999976554432 211 1111122224578999999999999999988876
Q ss_pred EEE
Q 007229 518 AIV 520 (612)
Q Consensus 518 i~i 520 (612)
++|
T Consensus 485 ~~v 487 (495)
T 1q47_A 485 AQL 487 (495)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
No 385
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=26.57 E-value=2.9e+02 Score=23.29 Aligned_cols=114 Identities=9% Similarity=0.037 Sum_probs=64.8
Q ss_pred EEEEEEccCCCeEEEEecCCeEEEEEccC-------cccc-cceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecC
Q 007229 453 VTACAIAPDGSEAIVGGQNGKLHIYSISG-------NTLT-EEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRV 524 (612)
Q Consensus 453 i~~~~~s~~~~~l~~~~~dg~v~i~d~~~-------~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~ 524 (612)
+..+........|+..+..|.++-+.... +... ....+. ....|.++....++.+|+.++..|.++...+.
T Consensus 35 l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~L~-~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~ 113 (256)
T 1zvt_A 35 FKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLP-PGATVDHMLMESDDQKLLMASDAGYGFVCTFN 113 (256)
T ss_dssp EEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGGGTCCCC-TTCCEEEEECCCTTCEEEEEBTTSEEEEEEGG
T ss_pred EEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEeeeeecCC-CCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHH
Confidence 33333334445666677788766665432 1110 111222 23456666443456778889999999998774
Q ss_pred Ccce------eeecccccccceeEEEec-CCCcEEEEeecCcEEEEEEccC
Q 007229 525 SKEV------KLNNMLFHTARINCLAWS-PSSTMVATGSIDTCVIIYEIGK 568 (612)
Q Consensus 525 ~~~~------~~~~~~~~~~~i~~~~~s-~~~~~l~s~~~d~~i~iwd~~~ 568 (612)
.... ....+. ....+..+... .++..|+..+.+|.+..++...
T Consensus 114 e~~~~~r~G~~~i~L~-~~d~lv~~~~~~~~~~~i~l~T~~G~~lrf~~~e 163 (256)
T 1zvt_A 114 DLVARNRAGKALITLP-ENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSD 163 (256)
T ss_dssp GGCCCSTTCEECBCCC-TTCCBCCCEECCCTTCEEEEEETTSEEEEEEGGG
T ss_pred HhcccCcCceEEEEEC-CCCEEEEEEEecCCCCEEEEEcCCCeEEEEEHHH
Confidence 3221 112222 22345555454 3455788888999998898864
No 386
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=24.37 E-value=1.9e+02 Score=20.43 Aligned_cols=26 Identities=8% Similarity=0.060 Sum_probs=17.1
Q ss_pred eEEEecCCCcEEEEeecCcEEEEEEccC
Q 007229 541 NCLAWSPSSTMVATGSIDTCVIIYEIGK 568 (612)
Q Consensus 541 ~~~~~s~~~~~l~s~~~d~~i~iwd~~~ 568 (612)
..+.+..+|.+++... ++.+ +|...+
T Consensus 59 ~~l~l~~dGNLVl~d~-~~~~-iW~S~t 84 (113)
T 3mez_B 59 CFMRLGHSGELDITDD-RLNT-VFVSNT 84 (113)
T ss_dssp CEEEECTTSCEEEECT-TSCE-EEECSC
T ss_pred EEEEEeCCCcEEEECC-CCCE-EEECCC
Confidence 4577888888777543 4443 788765
No 387
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=24.21 E-value=1.9e+02 Score=28.72 Aligned_cols=58 Identities=19% Similarity=0.224 Sum_probs=37.0
Q ss_pred CeEEEEecCCeEEE-EEccCcc-------cccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEE
Q 007229 463 SEAIVGGQNGKLHI-YSISGNT-------LTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIV 520 (612)
Q Consensus 463 ~~l~~~~~dg~v~i-~d~~~~~-------~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i 520 (612)
..++.|+.+|.|.- ....... +.....+.....+|..|.++++.+.|..++.++.++|
T Consensus 430 tVlFLGT~~G~I~Kvv~~~~~~~~~~~~~~leEi~v~~~~~pI~~L~ld~~~~~LYV~t~~~V~kV 495 (667)
T 4gz8_A 430 DVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQL 495 (667)
T ss_dssp EEEEEEETTSEEEEEEEEC------CEEEEEEEEECSSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEEEECCCCeEEEEEEcCCCCccccceEEEEEEeecCCCceeeeEEEcCCCCEEEEEECCEEEEE
Confidence 35778999997753 3222211 1111122245678999999999999999988876655
No 388
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=23.67 E-value=4.1e+02 Score=24.05 Aligned_cols=203 Identities=12% Similarity=0.132 Sum_probs=106.9
Q ss_pred ceEEEEECCCCCeEEEEEcCCcEEEEecCCCC-----------eeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEE
Q 007229 192 FVNCIRFSPDGSKLISVSSDRKGLIYDGKSGE-----------KIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAK 260 (612)
Q Consensus 192 ~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~-----------~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~ 260 (612)
.+..++++....+.+....||.|+.|-..... ....+ .......|..++.. ..+.+....+|.|.
T Consensus 106 ~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v--~~l~~~~i~~va~G--~~hs~alt~~G~v~ 181 (389)
T 3kci_A 106 FIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVI--ESLRGIEVVDVAAG--GAHSACVTAAGDLY 181 (389)
T ss_dssp CEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEEC--GGGTTSCEEEEEEC--SSEEEEEETTSCEE
T ss_pred ceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEe--cccCCCeEEEEEeC--cCeEEEEeCCCeEE
Confidence 45556777667777778889999999643211 01111 10112356666654 44556667899999
Q ss_pred EEEeecCCCCCe--eEeeeecc-Cccccceeeeeeec--cCCEEEEEEcCCEEEEEEcCCCCCC----------ceeecC
Q 007229 261 VWEILEDGSGGR--VIKTFASS-TSNAVEDMLVGCLW--QNDHLITVSLGGIISIFSASNLDKA----------PLSFSG 325 (612)
Q Consensus 261 iw~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~----------~~~~~~ 325 (612)
.|-....+.-+. ........ ........+..+.. .....++...+|.+..|-.....+. ...+..
T Consensus 182 ~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~ 261 (389)
T 3kci_A 182 TWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDS 261 (389)
T ss_dssp EEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGG
T ss_pred EeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecc
Confidence 997632211110 00000000 00001112222222 2467788889999999964432111 011111
Q ss_pred -cccceeEEEEEecCCcEEEEEecCCcEEEEEcCCc------------eeeeeceecccceEEEEeeccEEEEecCCCeE
Q 007229 326 -HVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVG------------YSSKLEKKYDARIKCLAAVEEVIFTAGFDNKV 392 (612)
Q Consensus 326 -~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~------------~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i 392 (612)
....|..++.- ....+.-..+|.|..|=.... .+..........|..++.-....+....+|.+
T Consensus 262 ~~~~~v~~v~~G---~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G~~h~~al~~~G~v 338 (389)
T 3kci_A 262 LTGLGVVKVECG---SQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEV 338 (389)
T ss_dssp GTTSCEEEEEEE---TTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTCCE
T ss_pred cCCCcEEEEeCC---CCEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEeccCeEEEECCCCCE
Confidence 11235555443 455556678999999954321 01111111334677888766667777889999
Q ss_pred EEEecCCCC
Q 007229 393 WRVPLCEGE 401 (612)
Q Consensus 393 ~~~~~~~~~ 401 (612)
+.|-.....
T Consensus 339 ~~wG~n~~G 347 (389)
T 3kci_A 339 YTWGDNDEG 347 (389)
T ss_dssp EEEECCTTS
T ss_pred EEeeCCCCC
Confidence 999876543
No 389
>3ol2_B Plexin-B1; beta-propeller, signalling, extacellular, signaling protein; HET: NAG BMA; 2.99A {Homo sapiens}
Probab=23.06 E-value=2.1e+02 Score=27.44 Aligned_cols=69 Identities=16% Similarity=0.201 Sum_probs=43.7
Q ss_pred eEEEEEEcc--CCCeEEEEecCCeEEEEEcc-Ccc--cccceeeccccCce-EEEEEcCCCcEEEEEcCCCeEEEE
Q 007229 452 TVTACAIAP--DGSEAIVGGQNGKLHIYSIS-GNT--LTEEMVLEKHRGAI-TVIQYSPDVSMFASADGNREAIVW 521 (612)
Q Consensus 452 ~i~~~~~s~--~~~~l~~~~~dg~v~i~d~~-~~~--~~~~~~~~~~~~~i-~~~~~s~~~~~l~~~~~d~~i~iw 521 (612)
..++++... +...++.|+.+|.|.-.-+. +.. ......+ ....+| ..|.++++...|..++..+.++|-
T Consensus 388 ~lT~IaVd~~~g~tV~FlGT~~G~l~Kv~~~~~~~~~~~ee~~v-~~~~pi~~~l~l~~~~~~Lyv~s~~~V~~vp 462 (528)
T 3ol2_B 388 QLTAVAVTMEDGHTIAFLGDSQGQLHRVYLGPGSDGHPYSTQSI-QQGSAVSRDLTFDGTFEHLYVMTQSTLLKVP 462 (528)
T ss_dssp CEEEEEEEEETTEEEEEEEETTSEEEEEECSSSCCSCCSEEEES-STTSCCCSCCEECTTSSEEEEECSSCEEEEE
T ss_pred ceEEEEEEeecCeEEEEEECCCCeEEEEEEcCCCCeeEEeeecc-CCCCcceeeEEEecCCCEEEEEeCCEEEEEE
Confidence 356666543 23456779999988755443 211 1112223 345678 489999999999999888776653
No 390
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=22.51 E-value=3.5e+02 Score=22.79 Aligned_cols=142 Identities=7% Similarity=0.005 Sum_probs=76.5
Q ss_pred eEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCC-------cceeeec--cc
Q 007229 464 EAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVS-------KEVKLNN--ML 534 (612)
Q Consensus 464 ~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~-------~~~~~~~--~~ 534 (612)
..++.+.+|.|+--........ ...+.... .+..+........|+..+..|.++-..... +..+... +.
T Consensus 4 v~v~lT~~G~iKr~~~~~~~~~-~~~lke~D-~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~L~ 81 (256)
T 1zvt_A 4 VTIVLSQMGWVRSAKGHDIDAP-GLNYKAGD-SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLP 81 (256)
T ss_dssp EEEEEETTSEEEEEESSCCCST-TSCCCTTC-CEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGGGTCCCC
T ss_pred EEEEEeCCCEEEEeeCCcCCce-eccCCCCC-EEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEeeeeecCC
Confidence 3455677777766554432211 12233333 333333333344555666778766554321 1111011 22
Q ss_pred ccccceeEEEecCCCcEEEEeecCcEEEEEEccC------CCcceeeeecccccCeeeEEEe--cCceEEEccCCCeEEE
Q 007229 535 FHTARINCLAWSPSSTMVATGSIDTCVIIYEIGK------PASSRITIKNAHLGGVYGVAFM--DDFNVVSSGEDACIRV 606 (612)
Q Consensus 535 ~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~------~~~~~~~~~~~h~~~v~~~~~~--~~~~l~s~~~d~~i~~ 606 (612)
....|.++....++.+|+.++..|.++...+.. .+ .....+.. .+.+..+... ++..++..+.+|.+..
T Consensus 82 -~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~~r~G-~~~i~L~~-~d~lv~~~~~~~~~~~i~l~T~~G~~lr 158 (256)
T 1zvt_A 82 -PGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAG-KALITLPE-NAHVMPPVVIEDASDMLLAITQAGRMLM 158 (256)
T ss_dssp -TTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTC-EECBCCCT-TCCBCCCEECCCTTCEEEEEETTSEEEE
T ss_pred -CCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhcccCcCc-eEEEEECC-CCEEEEEEEecCCCCEEEEEcCCCeEEE
Confidence 234566664434566788899999999998854 11 22222332 2455555444 3556888888888887
Q ss_pred EEec
Q 007229 607 WRLA 610 (612)
Q Consensus 607 w~~~ 610 (612)
++++
T Consensus 159 f~~~ 162 (256)
T 1zvt_A 159 FPVS 162 (256)
T ss_dssp EEGG
T ss_pred EEHH
Confidence 7764
No 391
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens}
Probab=22.22 E-value=2.1e+02 Score=27.89 Aligned_cols=59 Identities=12% Similarity=0.079 Sum_probs=37.6
Q ss_pred CeEEEEecCCeEEEEEccCcc----cccceee--ccccCceEEEEEcCCCcEEEEEcCCCeEEEE
Q 007229 463 SEAIVGGQNGKLHIYSISGNT----LTEEMVL--EKHRGAITVIQYSPDVSMFASADGNREAIVW 521 (612)
Q Consensus 463 ~~l~~~~~dg~v~i~d~~~~~----~~~~~~~--~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw 521 (612)
..++.|+.+|.|.-.-+.... ......+ .....+|..|.++++...|..++.++.++|-
T Consensus 381 tVlFLGT~~G~l~Kvv~~~~~~~~~~~~ieei~~~~~~~pi~~L~ls~~~~~LyV~s~~~V~qVP 445 (590)
T 3nvq_A 381 HVLYLTTDRGTIHKVVEPGEQEHSFAFNIMEIQPFRRAAAIQTMSLDAERRKLYVSSQWEVSQVP 445 (590)
T ss_dssp EEEEEEETTSCEEEEECCCSSTTCCCEEEEEECCCSSCCCCCEEEEETTTTEEEEECSSEEEEEE
T ss_pred EEEEEEcCCcEEEEEEecCCCCcceeEEEEEeeccCCCCceeeEEEcCCCCEEEEEecceEEEcc
Confidence 367789999987644332211 1101111 1345689999999999999888887666553
No 392
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=21.30 E-value=4.7e+02 Score=23.85 Aligned_cols=202 Identities=12% Similarity=0.058 Sum_probs=103.7
Q ss_pred ceEEEEECCCCCeEEEEEcC-CcEEEEecCCC-C--------eeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEE
Q 007229 192 FVNCIRFSPDGSKLISVSSD-RKGLIYDGKSG-E--------KIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKV 261 (612)
Q Consensus 192 ~v~~~~~s~~~~~l~~~~~d-g~i~vwd~~~~-~--------~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i 261 (612)
.|..++... .+.+....+ +.|+.|-.... + ..............|..++.. ..+.+....+|.|..
T Consensus 69 ~i~~va~G~--~ht~al~~~gg~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G--~~h~~alt~~G~v~~ 144 (406)
T 4d9s_A 69 QIVSVTCGA--DHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACG--DSHCLAVTMEGEVQS 144 (406)
T ss_dssp CEEEEEECS--SEEEEEETTTTEEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEEC--SSEEEEEETTSCEEE
T ss_pred CEEEEEeCc--ceEEEEECCCCEEEEEcCCCCcCCCCCCCCccccceEecccCCCCEEEEEEC--hhheEEEcCCCcEEE
Confidence 566666543 334444555 48999953321 1 111111111122356666654 445666678999999
Q ss_pred EEeecCCCCCee--Eeee-eccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCC----------ceeec-Ccc
Q 007229 262 WEILEDGSGGRV--IKTF-ASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKA----------PLSFS-GHV 327 (612)
Q Consensus 262 w~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----------~~~~~-~~~ 327 (612)
|-....+.-+.. .... ...........+..+.......++...+|.+..|-.....+. ...+. ...
T Consensus 145 wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~ 224 (406)
T 4d9s_A 145 WGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGG 224 (406)
T ss_dssp EECCTTSTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTT
T ss_pred eCCCCCccCCCCCCCCcccceEecccCCCcEEEEecCCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCC
Confidence 976332211100 0000 000000111234555556778888899999999974432211 00111 111
Q ss_pred cceeEEEEEecCCcEEEEEecCCcEEEEEcCCce------------eeeeceecccceEEEEeeccEEEEecCCCeEEEE
Q 007229 328 KNVSTLTALKISQQTILSSSYDGAIIKWIRGVGY------------SSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRV 395 (612)
Q Consensus 328 ~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~------------~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~ 395 (612)
..+..++.- ....+.-..+|.|+.|=....- +..........|..++.-....+....++.++.|
T Consensus 225 ~~i~~va~G---~~ht~~l~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~w 301 (406)
T 4d9s_A 225 EKMSMVACG---WRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGW 301 (406)
T ss_dssp CCEEEEEEC---SSEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEE
T ss_pred ceEEEEEEC---CCcEEEEcCCCCEEEeeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEecCCEEEEEcCCCeEEEe
Confidence 344444433 4555666788999999543211 0111111334577777766667777889999999
Q ss_pred ecCCC
Q 007229 396 PLCEG 400 (612)
Q Consensus 396 ~~~~~ 400 (612)
-....
T Consensus 302 G~n~~ 306 (406)
T 4d9s_A 302 GWNKF 306 (406)
T ss_dssp ECCTT
T ss_pred eCCCC
Confidence 76543
No 393
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Probab=20.74 E-value=5e+02 Score=25.87 Aligned_cols=68 Identities=18% Similarity=0.178 Sum_probs=42.1
Q ss_pred EEEEEEc----cCCC---eEEEEecCCeEEEE-EccCccc-ccceeeccccCceEEEEEcCCC--cEEEEEcCCCeEEE
Q 007229 453 VTACAIA----PDGS---EAIVGGQNGKLHIY-SISGNTL-TEEMVLEKHRGAITVIQYSPDV--SMFASADGNREAIV 520 (612)
Q Consensus 453 i~~~~~s----~~~~---~l~~~~~dg~v~i~-d~~~~~~-~~~~~~~~~~~~i~~~~~s~~~--~~l~~~~~d~~i~i 520 (612)
.++++.. .+++ .++.|+.+|.|.-. ....... ......-....+|..|.++++. .+|..++..+.++|
T Consensus 399 ~T~iaVd~v~~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~ee~~~~~~~~pI~~l~l~~~~~~~~Lyv~s~~~V~~v 477 (663)
T 1olz_A 399 YTQIVVDRTQALDGTVYDVMFVSTDRGALHKAISLEHAVHIIEETQLFQDFEPVQTLLLSSKKGNRFVYAGSNSGVVQA 477 (663)
T ss_dssp EEEEEEEEEECTTSCEEEEEEEEETTSEEEEEEECSSSEEEEEEEECCTTCCCCCEEEECCSSSSCEEEEECSSCEEEE
T ss_pred eEEEEEEEEeccCCCceEEEEEEcCCcEEEEEEecCCCceEEEEecccCCCCcceeeEeccCCCccEEEEEEcCeEEEE
Confidence 4566653 3443 68889999977544 3333221 1111122345789999999987 89988888776554
No 394
>3kxt_A Chromatin protein CREN7; protein-DNA complex, crenarchaea chromatin protein, minor-GR binding, methylation; 1.60A {Sulfolobus solfataricus} PDB: 2jtm_A 3lwh_A* 3lwi_A*
Probab=20.46 E-value=1.4e+02 Score=17.57 Aligned_cols=31 Identities=23% Similarity=0.324 Sum_probs=17.0
Q ss_pred eeEeeeeeccCCCCCCCceeEEEEcc-CCCEE
Q 007229 3 EVHLSETYACAPSTERGRGILISGNP-KTDTI 33 (612)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l 33 (612)
++..+++|.-.|.+-.+-+.++=-+| +|+++
T Consensus 15 ~L~P~KvWvL~P~GrkGVkIgLFk~P~tGk~f 46 (56)
T 3kxt_A 15 ELVPEKVWALAPKGRKGVKIGLFKDPETGKYF 46 (56)
T ss_dssp EECCSEEEEECCTTSCCEEEEEEECTTTCCEE
T ss_pred EEeeeEEEEEcCCCCCceEEEEEECCCCCcEe
Confidence 45555666666655555555555555 55543
Done!