BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007230
(612 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6DD45|ZCHC8_XENLA Zinc finger CCHC domain-containing protein 8 OS=Xenopus laevis
GN=zcchc8 PE=2 SV=1
Length = 743
Score = 98.2 bits (243), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 91/166 (54%), Gaps = 12/166 (7%)
Query: 313 GLEIIDDASR----CFNCGSYSHSLKECPKPRDKDAVNNARKQHKSKRNQNSASRNPMRY 368
G EI A R CFNCGS H +++CPKPRD+ +N RK+ + + ++N RY
Sbjct: 201 GQEIQVKAKRPKPCCFNCGSEEHQMRDCPKPRDQAHINMKRKEFLDACGE-AGNQNQQRY 259
Query: 369 YQNSAGGKYDGLRPGALDAETRQLLGLGELDPPPWLHRMRELGYPPGYLDSEDDDQPSGI 428
+ ++ +PG + E ++ LG+ + + PP+++RMRELGYPPG+L E + + SG+
Sbjct: 260 HAEEVEERFGKYKPGVISEELQEALGIMDKNLPPFIYRMRELGYPPGWL-KEAELENSGL 318
Query: 429 TIYADGEIKEGQEDGEIIETGRPASKR-----KMTTEFPGINAPIP 469
++Y DG+ + DGEI + A K +PG N P
Sbjct: 319 SLY-DGKERLDASDGEIEDRDTEAKKHVSYDVSKLVNYPGFNISAP 363
>sp|Q5F3D1|ZCHC8_CHICK Zinc finger CCHC domain-containing protein 8 OS=Gallus gallus
GN=ZCCHC8 PE=2 SV=1
Length = 613
Score = 94.0 bits (232), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 90/184 (48%), Gaps = 5/184 (2%)
Query: 321 SRCFNCGSYSHSLKECPKPRDKDAVNNARKQHKSKRNQNSASRNPMRYYQNSAGGKYDGL 380
S CFNCGS H +K+CPKPR+ ++ RK+ + S RY+ ++
Sbjct: 126 SHCFNCGSEEHQIKDCPKPRNAARISEKRKEFMEAYGEASNQNFQQRYHAEEVEERFGKF 185
Query: 381 RPGALDAETRQLLGLGELDPPPWLHRMRELGYPPGYLDSEDDDQPSGITIYADGEIKEGQ 440
+PG + E + LG+ PP+++RMR+LGYPPG+L E + + SG+ +Y DG+
Sbjct: 186 KPGVISGELQDALGVTAKSLPPFIYRMRQLGYPPGWL-KEAEMEHSGLALY-DGKDDNET 243
Query: 441 EDGEIIETGRPASKRKMTTEFPGINAPIPENA-DE-RLWAARPSSSDSSRDRSHHRL-NH 497
ED ++ +PG N P DE +++ + P +D H L N
Sbjct: 244 EDEGYLQPKHVTYDVSKLINYPGFNISTPSGIPDEWQIFGSIPMQPSQQKDVFAHYLSNF 303
Query: 498 HSES 501
H+ S
Sbjct: 304 HAPS 307
>sp|Q9CYA6|ZCHC8_MOUSE Zinc finger CCHC domain-containing protein 8 OS=Mus musculus
GN=Zcchc8 PE=2 SV=3
Length = 709
Score = 94.0 bits (232), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 93/186 (50%), Gaps = 13/186 (6%)
Query: 323 CFNCGSYSHSLKECPKPRDKDAVNNARKQHKSKRNQNSASRNPMRYYQNSAGGKYDGLRP 382
CFNCGS H +KECP PR+ ++ RK++ + S RY+ ++ +P
Sbjct: 232 CFNCGSEEHQMKECPMPRNAARISEKRKEYMDACGEASGQSFQQRYHAEEVEERFGRFKP 291
Query: 383 GALDAETRQLLGLGELDPPPWLHRMRELGYPPGYLDSEDDDQPSGITIY-----ADGEIK 437
G + E + LG+ + PP+++RMR+LGYPPG+L E + + SG+ +Y ADGE
Sbjct: 292 GVISEELQDALGVTDKSLPPFIYRMRQLGYPPGWL-KEAELENSGLALYDGNDDADGET- 349
Query: 438 EGQEDGEIIETGRPASKRKMTTEFPGINAPIPENA-DE-RLWAARPSSSDSSRDRSHHRL 495
E GEI K+ +PG N P DE R++ + P + +D L
Sbjct: 350 ---ETGEIQNKNVTYDLSKLVN-YPGFNISTPRGIPDEWRMFGSIPMQACQQKDVFASYL 405
Query: 496 NHHSES 501
N + +S
Sbjct: 406 NSNIQS 411
>sp|Q6NZY4|ZCHC8_HUMAN Zinc finger CCHC domain-containing protein 8 OS=Homo sapiens
GN=ZCCHC8 PE=1 SV=2
Length = 707
Score = 90.5 bits (223), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 92/184 (50%), Gaps = 8/184 (4%)
Query: 313 GLEIIDDASR----CFNCGSYSHSLKECPKPRDKDAVNNARKQHKSKRNQNSASRNPMRY 368
G EI A R CFNCGS H +K+CP PR+ ++ RK++ + + RY
Sbjct: 215 GQEIQVKAKRPKPHCFNCGSEEHQMKDCPMPRNAARISEKRKEYMDACGEANNQNFQQRY 274
Query: 369 YQNSAGGKYDGLRPGALDAETRQLLGLGELDPPPWLHRMRELGYPPGYLDSEDDDQPSGI 428
+ ++ +PG + E + LG+ + PP+++RMR+LGYPPG+L E + + SG+
Sbjct: 275 HAEEVEERFGRFKPGVISEELQDALGVTDKSLPPFIYRMRQLGYPPGWL-KEAELENSGL 333
Query: 429 TIYADGEIKEGQ-EDGEIIETGRPASKRKMTTEFPGINAPIPENA-DE-RLWAARPSSSD 485
+Y + +G+ E GEI + +PG N P DE R++ + P +
Sbjct: 334 ALYDGKDGTDGETEVGEIQQNKSVTYDLSKLVNYPGFNISTPRGIPDEWRIFGSIPMQAC 393
Query: 486 SSRD 489
+D
Sbjct: 394 QQKD 397
>sp|Q5R789|ZCHC8_PONAB Zinc finger CCHC domain-containing protein 8 OS=Pongo abelii
GN=ZCCHC8 PE=2 SV=1
Length = 704
Score = 90.5 bits (223), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 92/184 (50%), Gaps = 8/184 (4%)
Query: 313 GLEIIDDASR----CFNCGSYSHSLKECPKPRDKDAVNNARKQHKSKRNQNSASRNPMRY 368
G EI A R CFNCGS H +K+CP PR+ ++ RK++ + + RY
Sbjct: 213 GQEIQVKAKRPKPHCFNCGSEEHQMKDCPMPRNAARISEKRKEYMDACGEANNQNFQQRY 272
Query: 369 YQNSAGGKYDGLRPGALDAETRQLLGLGELDPPPWLHRMRELGYPPGYLDSEDDDQPSGI 428
+ ++ +PG + E + LG+ + PP+++RMR+LGYPPG+L E + + SG+
Sbjct: 273 HAEEVEERFGRFKPGVISEELQDALGVTDKSLPPFIYRMRQLGYPPGWL-KEAELENSGL 331
Query: 429 TIYADGEIKEGQ-EDGEIIETGRPASKRKMTTEFPGINAPIPENA-DE-RLWAARPSSSD 485
+Y + +G+ E GEI + +PG N P DE R++ + P +
Sbjct: 332 ALYDGKDGTDGETEVGEIQQNKSVTYDLSKLVNYPGFNISTPRGIPDEWRIFGSIPMQAC 391
Query: 486 SSRD 489
+D
Sbjct: 392 QQKD 395
>sp|Q2PE14|ZCHC8_DROME Zinc finger CCHC domain-containing protein 8 homolog OS=Drosophila
melanogaster GN=CG4622 PE=1 SV=2
Length = 553
Score = 80.5 bits (197), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 76/149 (51%), Gaps = 17/149 (11%)
Query: 321 SRCFNCGSYSHSLKECPKPRDKDAVNNARKQHKSKRNQNSASRNPMRYYQNSAGGKYDGL 380
S CFNCG HSL++C KPR+ + ARK+ S+ RY+ ++ ++ +
Sbjct: 183 SSCFNCGDTEHSLRDCTKPRNNSRITRARKKMTSRTE---------RYHVDTE-QRFGHI 232
Query: 381 RPGALDAETRQLLGLGELDPPPWLHRMRELGYPPGYLDSEDDDQPSGITIY-ADGE--IK 437
RPG + +TR +G P +RMR LGYPP +L+ E Q SGI ++ ADG K
Sbjct: 233 RPGKISTKTRHAMGYSRGQLPFIFYRMRVLGYPPAWLE-EAKVQSSGIALFNADGSEVTK 291
Query: 438 EGQEDGEIIETGRPASKRKMTTEFPGINA 466
+E+GE +K E+PG N
Sbjct: 292 SDEEEGESETFKYDVNK---IVEYPGFNV 317
>sp|P34656|YOTA_CAEEL Uncharacterized protein ZK632.11 OS=Caenorhabditis elegans
GN=ZK632.11 PE=4 SV=1
Length = 453
Score = 46.6 bits (109), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 17/102 (16%)
Query: 323 CFNCGSYSHSLKECPKPRDKDAVNNARKQHKSKRNQNSASRNPMRYYQNSAG---GKYDG 379
CFNC H+L++C + +D ++ +++ R R + N G +
Sbjct: 111 CFNCDG-EHNLRDCTQRKDFRRISRKKRESGDGRQ---------RVFYNDVGISKQREKH 160
Query: 380 LRPGALDAETRQLLGLGELDPPPWLHRMREL----GYPPGYL 417
+PG + R LGL D P ++RMR L GYPPG+L
Sbjct: 161 FKPGVISDRLRAALGLRGNDIPEHIYRMRRLGLIDGYPPGWL 202
>sp|Q02554|CUS1_YEAST Cold sensitive U2 snRNA suppressor 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=CUS1 PE=1 SV=1
Length = 436
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 56/131 (42%), Gaps = 11/131 (8%)
Query: 378 DGLRPGALDAETRQLLGLGELDPPPWLHRMRELGYPPGYLDSEDDDQPSGITIYADGEIK 437
D RPG + E R ++ L E PPW +M+++G P GY D + IT
Sbjct: 287 DHKRPGRISQELRAIMNLPEGQLPPWCMKMKDIGLPTGYPDLKIAGLNWDITNL------ 340
Query: 438 EGQEDGEIIETGRPASKRKMTTEFPGI---NAPIPENADERLWAARPS--SSDSSRDRSH 492
+G G+II SK++ F + P EN+ E A + D D
Sbjct: 341 KGDVYGKIIPNHHSRSKKQGRNYFGALISFETPEFENSKEDTQANAENGRQDDKIDDEVE 400
Query: 493 HRLNHHSESIS 503
H+L+H E IS
Sbjct: 401 HKLDHFQEDIS 411
>sp|Q9UUI3|SA145_SCHPO Pre-mRNA-splicing factor sap145 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=sap145 PE=1 SV=1
Length = 601
Score = 41.2 bits (95), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 22/38 (57%)
Query: 381 RPGALDAETRQLLGLGELDPPPWLHRMRELGYPPGYLD 418
RPG + E R+ LG+ PPPWL M+ G PP Y D
Sbjct: 332 RPGDISEELREALGIAPGAPPPWLFAMQRYGPPPSYPD 369
>sp|P18802|POL_HV1ND Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype D (isolate NDK) GN=gag-pol PE=3 SV=3
Length = 1432
Score = 38.5 bits (88), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 322 RCFNCGSYSHSLKECPKPRDKDAVNNARKQHKSK---RNQNSASRNPMRYYQNSAG 374
+CFNCG H+ K C PR K R+ H+ K Q + R + + Q AG
Sbjct: 389 KCFNCGKEGHTAKNCRAPRKKGCWKCGREGHQMKDCTERQANFLREDLAFPQGKAG 444
>sp|Q8AII2|GAG_SIVTN Gag polyprotein OS=Simian immunodeficiency virus (isolate TAN1)
GN=gag PE=3 SV=3
Length = 524
Score = 38.5 bits (88), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 59/156 (37%), Gaps = 39/156 (25%)
Query: 252 FFPAIRVGKAKGPAVSFWIDNQTRNQQNKNFIPSDSHGTPLYDRGYAL--GLTSGDG--- 306
F+ IR +A P V W+ +T QN N P H +G L LT+ G
Sbjct: 326 FYKTIRAEQASQP-VKTWM-TETLLVQNAN--PDCKHILKALGQGATLEEMLTACQGVGG 381
Query: 307 ------------SSNLEGGLEIIDDASR---------CFNCGSYSHSLKECPKPRDKDAV 345
+S GG+ ++ R CFNCG H+ + C PR K
Sbjct: 382 PSHKAKILAEAMASATAGGVNMLQGGKRPPLKKGQLQCFNCGKVGHTARNCRAPRKKGCW 441
Query: 346 NNARKQHKSKRNQNSASRNPMRYYQNSAGGKYDGLR 381
++ H+ K + +RN NS G + G R
Sbjct: 442 RCGQEGHQMK---DCTTRN------NSTGVNFLGKR 468
>sp|P05892|GAG_SIVVT Gag polyprotein OS=Simian immunodeficiency virus agm.vervet
(isolate AGM TYO-1) GN=gag PE=3 SV=1
Length = 519
Score = 38.1 bits (87), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 322 RCFNCGSYSHSLKECPKPRDKDAVNNARKQHKSK 355
RC+NCG + H ++CP+PR + + H +K
Sbjct: 398 RCYNCGKFGHMQRQCPEPRKTKCLKCGKLGHLAK 431
>sp|Q8AII1|POL_SIVTN Gag-Pol polyprotein OS=Simian immunodeficiency virus (isolate TAN1)
GN=gag-pol PE=3 SV=4
Length = 1462
Score = 37.7 bits (86), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 63/167 (37%), Gaps = 39/167 (23%)
Query: 252 FFPAIRVGKAKGPAVSFWIDNQTRNQQNKNFIPSDSHGTPLYDRGYAL--GLTSGDG--- 306
F+ IR +A P V W+ +T QN N P H +G L LT+ G
Sbjct: 326 FYKTIRAEQASQP-VKTWM-TETLLVQNAN--PDCKHILKALGQGATLEEMLTACQGVGG 381
Query: 307 ------------SSNLEGGLEIIDDASR---------CFNCGSYSHSLKECPKPRDKDAV 345
+S GG+ ++ R CFNCG H+ + C PR K
Sbjct: 382 PSHKAKILAEAMASATAGGVNMLQGGKRPPLKKGQLQCFNCGKVGHTARNCRAPRKKGCW 441
Query: 346 NNARKQHKSKRNQNSASRNPMRYYQNSAGGKYDGLRPGALDAETRQL 392
++ H+ K + +RN NS G + + +TR+L
Sbjct: 442 RCGQEGHQMK---DCTTRN------NSTGVNFFRETHPLVGVQTREL 479
>sp|P27973|POL_SIVV1 Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.vervet
(isolate AGM155) GN=gag-pol PE=3 SV=2
Length = 1470
Score = 37.4 bits (85), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 322 RCFNCGSYSHSLKECPKPRDKDAVNNARKQHKSK 355
+C+NCG + H ++CP+PR + + H +K
Sbjct: 399 KCYNCGKFGHMQRQCPEPRKIKCLKCGKPGHLAK 432
>sp|O89290|POL_HV193 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype F1 (isolate 93BR020) GN=gag-pol PE=3 SV=3
Length = 1430
Score = 37.4 bits (85), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 308 SNLEGGLEIIDDASRCFNCGSYSHSLKECPKPRDKDAVNNARKQHKSK 355
SN +G I+ +CFNCG H K C PR K R+ H+ K
Sbjct: 376 SNFKGQRRIV----KCFNCGKEGHIAKNCRAPRKKGCWKCGREGHQMK 419
>sp|P27980|POL_SIVVG Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.vervet
(isolate AGM3) GN=gag-pol PE=3 SV=2
Length = 1465
Score = 37.4 bits (85), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 322 RCFNCGSYSHSLKECPKPRDKDAVNNARKQHKSK 355
+C+NCG + H ++CP+PR + + H +K
Sbjct: 403 KCYNCGKFGHMQRQCPEPRKMRCLKCGKPGHLAK 436
>sp|P05895|POL_SIVVT Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.vervet
(isolate AGM TYO-1) GN=gag-pol PE=3 SV=2
Length = 1467
Score = 37.0 bits (84), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 322 RCFNCGSYSHSLKECPKPRDKDAVNNARKQHKSK 355
+C+NCG + H ++CP+PR + + H +K
Sbjct: 403 KCYNCGKFGHMQRQCPEPRKMRCLKCGKPGHLAK 436
>sp|Q9WC53|GAG_HV1S2 Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype J (isolate SE9280) GN=gag PE=3 SV=3
Length = 497
Score = 37.0 bits (84), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 7/85 (8%)
Query: 322 RCFNCGSYSHSLKECPKPRDKDAVNNARKQHKSKRNQNSASRNPMRYYQNSAGGKYDGLR 381
+CFNCG H K C PR K ++ H+ K + + + +S G + L+
Sbjct: 390 KCFNCGKQGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSSKGRPGNFLQ 449
Query: 382 ----PGALDAETRQLLGLGELDPPP 402
P A AE+ LGLGE P P
Sbjct: 450 SRPEPTAPPAES---LGLGEEIPSP 471
>sp|O89291|GAG_HV193 Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype F1 (isolate 93BR020) GN=gag PE=3 SV=3
Length = 492
Score = 37.0 bits (84), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 308 SNLEGGLEIIDDASRCFNCGSYSHSLKECPKPRDKDAVNNARKQHKSK 355
SN +G I+ +CFNCG H K C PR K R+ H+ K
Sbjct: 376 SNFKGQRRIV----KCFNCGKEGHIAKNCRAPRKKGCWKCGREGHQMK 419
>sp|Q79666|POL_HV1MV Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group O
(isolate MVP5180) GN=gag-pol PE=3 SV=3
Length = 1446
Score = 37.0 bits (84), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 23/53 (43%)
Query: 322 RCFNCGSYSHSLKECPKPRDKDAVNNARKQHKSKRNQNSASRNPMRYYQNSAG 374
+CFNCG H K C PR + ++ H+ K +N N R S G
Sbjct: 395 KCFNCGKEGHIAKNCRAPRKRGCWKCGQEGHQMKDCKNGRQANFFREVLASGG 447
>sp|Q02843|GAG_SIVG1 Gag polyprotein OS=Simian immunodeficiency virus agm.grivet
(isolate AGM gr-1) GN=gag PE=1 SV=1
Length = 513
Score = 37.0 bits (84), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 7/80 (8%)
Query: 322 RCFNCGSYSHSLKECPKPRDKDAVNNARKQHKSKRNQNSASRNPMRYYQNSAGGKYDGLR 381
+CFNCG + H +EC PR + H +K +N + N + Y G + G +
Sbjct: 391 KCFNCGKFGHMQRECKAPRQIKCFKCGKIGHMAKDCKNGQA-NFLGY------GHWGGAK 443
Query: 382 PGALDAETRQLLGLGELDPP 401
P +GL PP
Sbjct: 444 PRNFVQYRGDTVGLEPTAPP 463
>sp|P27972|GAG_SIVV1 Gag polyprotein OS=Simian immunodeficiency virus agm.vervet
(isolate AGM155) GN=gag PE=3 SV=1
Length = 520
Score = 36.6 bits (83), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 322 RCFNCGSYSHSLKECPKPRDKDAVNNARKQHKSK 355
+C+NCG + H ++CP+PR + + H +K
Sbjct: 399 KCYNCGKFGHMQRQCPEPRKIKCLKCGKPGHLAK 432
>sp|P27978|GAG_SIVVG Gag polyprotein OS=Simian immunodeficiency virus agm.vervet
(isolate AGM3) GN=gag PE=3 SV=1
Length = 521
Score = 36.6 bits (83), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 322 RCFNCGSYSHSLKECPKPRDKDAVNNARKQHKSK 355
+C+NCG + H ++CP+PR + + H +K
Sbjct: 403 KCYNCGKFGHMQRQCPEPRKMRCLKCGKPGHLAK 436
>sp|P04589|POL_HV1EL Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype D (isolate ELI) GN=gag-pol PE=3 SV=3
Length = 1435
Score = 36.2 bits (82), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
Query: 309 NLEGGLEIIDDASRCFNCGSYSHSLKECPKPRDKDAVNNARKQHKSK---RNQNSASRNP 365
N +G +II +CFNCG H K C PR K ++ H+ K Q + R
Sbjct: 383 NFKGPRKII----KCFNCGKEGHIAKNCRAPRKKGCWRCGKEGHQLKDCTERQANFLREN 438
Query: 366 MRYYQNSAG 374
+ + Q AG
Sbjct: 439 LAFPQGKAG 447
>sp|P18800|GAG_HV1ND Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype D (isolate NDK) GN=gag PE=3 SV=3
Length = 497
Score = 36.2 bits (82), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 322 RCFNCGSYSHSLKECPKPRDKDAVNNARKQHKSK 355
+CFNCG H+ K C PR K R+ H+ K
Sbjct: 389 KCFNCGKEGHTAKNCRAPRKKGCWKCGREGHQMK 422
>sp|Q9JWJ3|SYC_NEIMA Cysteine--tRNA ligase OS=Neisseria meningitidis serogroup A /
serotype 4A (strain Z2491) GN=cysS PE=3 SV=1
Length = 699
Score = 36.2 bits (82), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 53/124 (42%), Gaps = 21/124 (16%)
Query: 492 HHRLNHHSESISRGRYHEQRWSRD--YRDDGPPGV----------DPVSSYPPRYGGYDY 539
HH HH +SI+ H + W + R DG + + Y P +
Sbjct: 479 HHAQTHHGQSIAS---HVKYWLHNGFIRVDGEKMSKSLGNFFTIREVLKQYDPEVVRFFI 535
Query: 540 YSSHSRSPTRGRSYSDRDRDDYASHGSYSSPYSNRHTSPP-DYDLDRYRDDYSREYLSRS 598
+H RSP +YSD DD + G+ + Y+ +P ++DL +DY+R + +
Sbjct: 536 LRAHYRSPL---NYSDAHLDD--AKGALTRLYTTLKNTPAAEFDLSENVNDYTRRFYAAM 590
Query: 599 MDEY 602
D++
Sbjct: 591 NDDF 594
>sp|Q09763|GEF1_SCHPO Rho guanine nucleotide exchange factor gef1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=gef1 PE=1 SV=1
Length = 753
Score = 36.2 bits (82), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 43/102 (42%), Gaps = 23/102 (22%)
Query: 485 DSSRDRSHHRLNHHSESISRGRYHEQRWSRDYRDDGPPGVDPVSSYPPRY---GGY---- 537
D S +S +RL S GR ++R +D P PVSS R+ G +
Sbjct: 68 DVSESQSEYRL-------SSGRRSRASFARALQDPQTPNTPPVSSQHRRFFSEGSFNLPN 120
Query: 538 ---------DYYSSHSRSPTRGRSYSDRDRDDYASHGSYSSP 570
D +S+S + T R Y DR+R DYA Y+ P
Sbjct: 121 SNMSHSLNGDSTASNSSTLTPNRIYGDRNRQDYAQSSRYTLP 162
>sp|P03369|POL_HV1A2 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate ARV2/SF2) GN=gag-pol PE=1 SV=3
Length = 1437
Score = 35.8 bits (81), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 322 RCFNCGSYSHSLKECPKPRDKDAVNNARKQHKSK---RNQNSASRNPMRYYQNSA 373
+CFNCG H K C PR K R+ H+ K Q + R + + Q A
Sbjct: 393 KCFNCGKEGHIAKNCRAPRKKGCWRCGREGHQMKDCTERQANFLREDLAFLQGKA 447
>sp|Q77372|GAG_HV1AN Gag polyprotein OS=Human immunodeficiency virus type 1 group O
(isolate ANT70) GN=gag PE=3 SV=3
Length = 498
Score = 35.8 bits (81), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 11/65 (16%)
Query: 322 RCFNCGSYSHSLKECPKPRDKDAVNNARKQHKSKRNQNSASRNPMRYYQNSAGGKY---D 378
+CFNCG H + C PR K ++ H+ K +N N + GKY
Sbjct: 395 KCFNCGKEGHIARNCRAPRKKGCWKCGQEGHQMKDCRNGKQANFL--------GKYWPPG 446
Query: 379 GLRPG 383
G RPG
Sbjct: 447 GTRPG 451
>sp|A3PBY5|GLMU_PROM0 Bifunctional protein GlmU OS=Prochlorococcus marinus (strain MIT
9301) GN=glmU PE=3 SV=1
Length = 449
Score = 35.4 bits (80), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 61/142 (42%), Gaps = 27/142 (19%)
Query: 12 LVVVPLWCFWWRYFLWFSGPLRVVHLMQGIWAVDQGSSYIGYLPFCLYMEAEDVIDLLAS 71
L+ ++CF W LR + + I+ D I L L +E ED
Sbjct: 167 LINAGVYCFNWGKLSEIINTLRSNNNQKEIYLTDT----ISMLKNSLSLEVED------- 215
Query: 72 SPSGCEEENNEMPGRDGEPGKSDFQPN--DSEKKEDDSNGESMELNELNVEIEDGQLIEE 129
N E+ G + S+ + N +S K++ NG + +N+ + I EE
Sbjct: 216 --------NGELQGINNRIQLSECEENMQNSIKEKHMLNGVTF-INKASCSIS-----EE 261
Query: 130 GEVGKDVVDDSNVNVEGTTTVE 151
E+GKDV+ ++N ++ G T ++
Sbjct: 262 AEIGKDVIIEANTHLRGNTKIK 283
>sp|Q9WC62|GAG_HV1S9 Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype J (isolate SE9173) GN=gag PE=1 SV=3
Length = 497
Score = 35.4 bits (80), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 7/85 (8%)
Query: 322 RCFNCGSYSHSLKECPKPRDKDAVNNARKQHKSKRNQNSASRNPMRYYQNSAGGKYDGLR 381
+CFNCG H K C PR K ++ H+ K + + + +S G + L+
Sbjct: 390 KCFNCGKQGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSSKGRPGNFLQ 449
Query: 382 ----PGALDAETRQLLGLGELDPPP 402
P A AE+ LG GE P P
Sbjct: 450 SRPEPTAPPAES---LGFGEEIPSP 471
>sp|Q79665|GAG_HV1MV Gag polyprotein OS=Human immunodeficiency virus type 1 group O
(isolate MVP5180) GN=gag PE=3 SV=3
Length = 498
Score = 35.4 bits (80), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 11/65 (16%)
Query: 322 RCFNCGSYSHSLKECPKPRDKDAVNNARKQHKSKRNQNSASRNPMRYYQNSAGGKY---D 378
+CFNCG H K C PR + ++ H+ K +N N + GKY
Sbjct: 395 KCFNCGKEGHIAKNCRAPRKRGCWKCGQEGHQMKDCKNGRQANFL--------GKYWPPG 446
Query: 379 GLRPG 383
G RPG
Sbjct: 447 GTRPG 451
>sp|Q9QSR3|POL_HV1VI Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype F1 (isolate VI850) GN=gag-pol PE=3 SV=3
Length = 1430
Score = 35.4 bits (80), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 308 SNLEGGLEIIDDASRCFNCGSYSHSLKECPKPRDKDAVNNARKQHKSK 355
SN +G ++ +CFNCG H + C PR K R+ H+ K
Sbjct: 375 SNFKGQRRVV----KCFNCGKEGHIARNCRAPRKKGCWKCGREGHQMK 418
>sp|Q3ITT7|SYA_NATPD Alanine--tRNA ligase OS=Natronomonas pharaonis (strain DSM 2160 /
ATCC 35678) GN=alaS PE=3 SV=1
Length = 932
Score = 35.0 bits (79), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 33/69 (47%)
Query: 454 KRKMTTEFPGINAPIPENADERLWAARPSSSDSSRDRSHHRLNHHSESISRGRYHEQRWS 513
+ K + G++AP+ E D + + D+ RD + + E++ RGR H +R +
Sbjct: 382 RTKRLADGVGVDAPLDELVDMQAERLDYENRDTVRDIVRTEVEKYRETLERGRRHVERLA 441
Query: 514 RDYRDDGPP 522
+Y G P
Sbjct: 442 EEYAQKGDP 450
>sp|Q5BIR3|THSD1_BOVIN Thrombospondin type-1 domain-containing protein 1 OS=Bos taurus
GN=THSD1 PE=2 SV=1
Length = 849
Score = 34.3 bits (77), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 5/88 (5%)
Query: 487 SRDRSHHRLNHHSESISRGRYHEQRWSRDYRDDGPPGVDP--VSSYPPRYGGYDYYSSHS 544
S+ RSH R +H + S +HE R +R +R+ + P ++ PR +D
Sbjct: 636 SQVRSHSRGSHFRRTAS---FHEARQARPFRERSLSTLTPRPTPAHGPRARTWDQAGERG 692
Query: 545 RSPTRGRSYSDRDRDDYASHGSYSSPYS 572
R P+RG + RD S P S
Sbjct: 693 RPPSRGTALFPEKRDHGPGAAGASGPLS 720
>sp|Q99996|AKAP9_HUMAN A-kinase anchor protein 9 OS=Homo sapiens GN=AKAP9 PE=1 SV=3
Length = 3911
Score = 33.9 bits (76), Expect = 4.4, Method: Composition-based stats.
Identities = 35/142 (24%), Positives = 68/142 (47%), Gaps = 16/142 (11%)
Query: 99 DSEKKEDDSNGESMELNELNVEIEDGQLIEEGEVGKDVVDDSNVNVEGTTTVELAETIVE 158
+ +KK ++SN E ++ E +E + ++IEE + ++ D + EL E IV+
Sbjct: 323 EQDKKVENSNKEEIQEKETIIEELNTKIIEEEKKTLELKD--KLTTADKLLGELQEQIVQ 380
Query: 159 SDSRIHVQNGCLEVGNRSPNHNRMKDVSSTSGVKRARMTLDEEQPSVHV-------IYNS 211
+ I +N LE+ N ++ K+ S+ +K+ T++E Q H I
Sbjct: 381 KNQEI--KNMKLELTN-----SKQKERQSSEEIKQLMGTVEELQKRNHKDSQFETDIVQR 433
Query: 212 LTRASKQKLEELLQQWSEWQAQ 233
+ + +++KLE+L + E Q
Sbjct: 434 MEQETQRKLEQLRAELDEMYGQ 455
>sp|P24736|GAG_HV1U4 Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype A (isolate U455) GN=gag PE=1 SV=3
Length = 493
Score = 33.5 bits (75), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 322 RCFNCGSYSHSLKECPKPRDKDAVNNARKQHKSK 355
+CFNCG H K C PR K ++ H+ K
Sbjct: 385 KCFNCGKEGHLAKNCRAPRKKGCWKCGKEGHQMK 418
>sp|Q9JXE6|SYC_NEIMB Cysteine--tRNA ligase OS=Neisseria meningitidis serogroup B (strain
MC58) GN=cysS PE=3 SV=1
Length = 473
Score = 33.5 bits (75), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 52/128 (40%), Gaps = 21/128 (16%)
Query: 492 HHRLNHHSESISRGRYHEQRWSRD--YRDDGPPGV----------DPVSSYPPRYGGYDY 539
HH HH +SI+ H + W + R DG + + Y P +
Sbjct: 253 HHAQTHHGQSIAS---HVKYWLHNGFIRVDGEKMSKSLGNFFTIREVLKQYDPEVVRFFI 309
Query: 540 YSSHSRSPTRGRSYSDRDRDDYASHGSYSSPYSNRHTSPP-DYDLDRYRDDYSREYLSRS 598
+H RSP +YSD DD + G+ + Y+ +PP D DDY+R +
Sbjct: 310 LRAHYRSPL---NYSDAHLDD--AKGALTRLYTTLKNTPPADPMPSEAGDDYTRRFYVAM 364
Query: 599 MDEYDRFR 606
D++D +
Sbjct: 365 NDDFDTVK 372
>sp|A2BQ92|GLMU_PROMS Bifunctional protein GlmU OS=Prochlorococcus marinus (strain
AS9601) GN=glmU PE=3 SV=1
Length = 449
Score = 33.5 bits (75), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 8/89 (8%)
Query: 64 DVIDLLASSPSGCEEENNEMPGRDGEPGKSDFQP--NDSEKKEDDSNGESMELNELNVEI 121
D I LL +S S E+N E+ G + S+ + +S K++ NG + +N+ + I
Sbjct: 200 DTISLLKNSLSLEVEDNGELQGINNRIHLSECEECIQNSIKEKHMLNGVTF-INKASCSI 258
Query: 122 EDGQLIEEGEVGKDVVDDSNVNVEGTTTV 150
EE E+GKDV+ ++N ++ G T +
Sbjct: 259 S-----EEAEIGKDVIIEANTHIRGNTKI 282
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.133 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 268,543,846
Number of Sequences: 539616
Number of extensions: 13233791
Number of successful extensions: 31540
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 273
Number of HSP's that attempted gapping in prelim test: 30638
Number of HSP's gapped (non-prelim): 972
length of query: 612
length of database: 191,569,459
effective HSP length: 123
effective length of query: 489
effective length of database: 125,196,691
effective search space: 61221181899
effective search space used: 61221181899
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.3 bits)