Query 007232
Match_columns 612
No_of_seqs 296 out of 2066
Neff 9.2
Searched_HMMs 46136
Date Thu Mar 28 20:45:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007232.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007232hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1046 Puromycin-sensitive am 100.0 1E-121 2E-126 1037.6 58.0 596 3-610 24-626 (882)
2 TIGR02412 pepN_strep_liv amino 100.0 2E-105 4E-110 907.6 62.8 567 13-611 13-593 (831)
3 COG0308 PepN Aminopeptidase N 100.0 2.7E-84 5.8E-89 733.5 55.0 571 9-602 12-602 (859)
4 TIGR02414 pepN_proteo aminopep 100.0 6.1E-83 1.3E-87 712.7 53.7 508 11-550 4-540 (863)
5 PRK14015 pepN aminopeptidase N 100.0 6.9E-82 1.5E-86 706.5 59.5 514 4-550 10-552 (875)
6 TIGR02411 leuko_A4_hydro leuko 100.0 6E-78 1.3E-82 656.2 40.4 428 8-465 5-453 (601)
7 PF01433 Peptidase_M1: Peptida 100.0 3E-76 6.6E-81 624.8 36.5 385 9-395 1-390 (390)
8 KOG1047 Bifunctional leukotrie 100.0 1.1E-55 2.4E-60 444.8 27.1 429 11-462 13-459 (613)
9 KOG1932 TATA binding protein a 100.0 2.2E-38 4.7E-43 341.6 32.0 428 16-465 27-506 (1180)
10 PF11838 ERAP1_C: ERAP1-like C 99.6 3.2E-16 6.9E-21 161.7 6.5 80 532-611 1-81 (324)
11 COG3975 Predicted protease wit 99.5 4.2E-12 9.2E-17 129.8 21.9 301 158-474 115-446 (558)
12 PF13485 Peptidase_MA_2: Pepti 99.2 1.6E-11 3.5E-16 108.0 6.8 105 300-418 24-128 (128)
13 PF10460 Peptidase_M30: Peptid 97.9 0.00075 1.6E-08 68.6 17.0 222 216-455 16-285 (366)
14 PF05299 Peptidase_M61: M61 gl 97.9 8.6E-06 1.9E-10 69.4 2.6 44 301-344 4-58 (122)
15 PF04450 BSP: Peptidase of pla 97.2 0.0077 1.7E-07 56.8 13.1 171 236-450 26-204 (205)
16 PF07607 DUF1570: Protein of u 96.2 0.0028 6E-08 54.8 2.3 38 303-341 3-43 (128)
17 PF10026 DUF2268: Predicted Zn 93.8 0.27 5.8E-06 46.4 8.1 100 239-345 4-113 (195)
18 PRK04860 hypothetical protein; 89.2 0.76 1.6E-05 41.6 5.3 70 236-314 5-76 (160)
19 COG4324 Predicted aminopeptida 86.6 0.72 1.6E-05 44.1 3.6 40 299-344 195-234 (376)
20 PF01863 DUF45: Protein of unk 86.1 5 0.00011 38.0 9.4 92 235-353 109-200 (205)
21 smart00731 SprT SprT homologue 84.5 0.88 1.9E-05 40.7 3.1 17 299-315 57-73 (146)
22 PF10023 DUF2265: Predicted am 83.3 1.1 2.4E-05 45.3 3.4 39 300-344 164-202 (337)
23 PF12725 DUF3810: Protein of u 82.3 1.6 3.4E-05 44.6 4.2 32 301-344 196-227 (318)
24 PF01447 Peptidase_M4: Thermol 75.9 5.2 0.00011 35.8 5.0 74 231-312 67-146 (150)
25 PF12315 DUF3633: Protein of u 74.0 5.1 0.00011 37.4 4.5 41 301-343 93-133 (212)
26 PF03272 Enhancin: Viral enhan 66.7 1.7E+02 0.0037 33.9 15.5 129 303-451 238-377 (775)
27 PF10989 DUF2808: Protein of u 66.6 92 0.002 27.7 10.9 47 73-120 76-122 (146)
28 PRK04351 hypothetical protein; 65.4 7.5 0.00016 34.7 3.6 16 298-313 58-73 (149)
29 PF04234 CopC: CopC domain; I 65.1 39 0.00085 27.6 7.6 61 46-109 19-82 (97)
30 PF01435 Peptidase_M48: Peptid 64.6 5.2 0.00011 38.4 2.7 70 242-320 35-108 (226)
31 COG4783 Putative Zn-dependent 62.8 8.7 0.00019 40.6 4.0 57 256-318 90-147 (484)
32 PF06114 DUF955: Domain of unk 62.0 8.5 0.00018 32.4 3.3 18 301-318 42-59 (122)
33 PF10263 SprT-like: SprT-like 58.7 7.2 0.00016 35.1 2.4 18 298-315 57-74 (157)
34 PF13699 DUF4157: Domain of un 55.6 17 0.00036 28.6 3.6 66 243-313 6-73 (79)
35 PF11940 DUF3458: Domain of un 54.9 50 0.0011 34.4 8.0 73 468-549 6-85 (367)
36 COG2372 CopC Uncharacterized p 54.3 34 0.00075 29.4 5.4 60 47-109 47-110 (127)
37 COG1451 Predicted metal-depend 54.2 94 0.002 29.9 9.2 93 234-353 119-211 (223)
38 COG3227 LasB Zinc metalloprote 53.9 14 0.00029 39.1 3.6 110 227-343 265-380 (507)
39 PRK03982 heat shock protein Ht 51.7 39 0.00084 34.0 6.5 66 240-316 70-140 (288)
40 COG0501 HtpX Zn-dependent prot 49.2 30 0.00064 34.9 5.3 65 247-319 108-175 (302)
41 COG3091 SprT Zn-dependent meta 48.9 28 0.00061 30.8 4.2 74 240-321 7-84 (156)
42 cd04269 ZnMc_adamalysin_II_lik 47.9 65 0.0014 30.0 7.1 14 300-313 130-143 (194)
43 PRK05457 heat shock protein Ht 47.5 36 0.00077 34.2 5.4 68 240-316 79-149 (284)
44 PF08325 WLM: WLM domain; Int 47.0 13 0.00029 34.6 2.1 21 296-316 77-97 (186)
45 PRK01345 heat shock protein Ht 45.1 45 0.00098 34.0 5.8 68 240-316 69-139 (317)
46 PHA02456 zinc metallopeptidase 44.6 11 0.00024 31.0 1.1 14 301-314 79-92 (141)
47 PRK03001 M48 family peptidase; 43.9 35 0.00077 34.2 4.8 66 240-316 69-139 (283)
48 COG2856 Predicted Zn peptidase 43.8 86 0.0019 29.9 7.0 40 301-340 72-116 (213)
49 PF13574 Reprolysin_2: Metallo 43.4 16 0.00035 33.6 2.1 13 301-313 111-123 (173)
50 PRK04897 heat shock protein Ht 43.3 30 0.00064 35.0 4.1 68 240-316 82-152 (298)
51 PF04597 Ribophorin_I: Ribopho 43.3 2.6E+02 0.0056 30.0 11.4 86 24-109 10-103 (432)
52 PF12174 RST: RCD1-SRO-TAF4 (R 42.9 66 0.0014 24.6 4.9 47 395-442 11-57 (70)
53 PF08014 DUF1704: Domain of un 41.4 1E+02 0.0022 31.9 7.7 85 241-340 116-213 (349)
54 PRK03072 heat shock protein Ht 40.0 53 0.0012 33.0 5.4 69 239-316 71-142 (288)
55 PRK02870 heat shock protein Ht 38.9 69 0.0015 33.0 6.0 64 241-312 118-184 (336)
56 cd04279 ZnMc_MMP_like_1 Zinc-d 38.8 1.2E+02 0.0026 27.1 7.1 37 219-255 2-41 (156)
57 PF14734 DUF4469: Domain of un 36.5 1.6E+02 0.0034 24.4 6.7 27 83-109 61-89 (102)
58 PF14524 Wzt_C: Wzt C-terminal 35.2 1.2E+02 0.0025 26.2 6.3 25 83-107 83-107 (142)
59 PRK10301 hypothetical protein; 35.0 2.5E+02 0.0054 24.2 8.0 25 85-109 85-109 (124)
60 PRK01265 heat shock protein Ht 32.3 99 0.0022 31.6 5.9 67 240-315 85-154 (324)
61 PRK02391 heat shock protein Ht 31.8 78 0.0017 32.0 5.0 68 240-316 78-148 (296)
62 KOG2661 Peptidase family M48 [ 30.2 1.5E+02 0.0033 29.9 6.5 18 299-316 273-290 (424)
63 PF01421 Reprolysin: Reprolysi 30.0 59 0.0013 30.5 3.7 14 299-312 129-142 (199)
64 PF09768 Peptidase_M76: Peptid 29.5 2.2E+02 0.0047 26.2 7.0 25 298-322 68-92 (173)
65 COG2719 SpoVR Uncharacterized 29.1 1.2E+02 0.0026 31.9 5.7 54 299-358 247-300 (495)
66 cd04272 ZnMc_salivary_gland_MP 28.7 87 0.0019 29.9 4.6 13 301-313 145-157 (220)
67 PF09087 Cyc-maltodext_N: Cycl 28.6 1.7E+02 0.0037 23.6 5.4 52 49-106 18-70 (88)
68 PF01431 Peptidase_M13: Peptid 28.3 43 0.00094 31.6 2.4 33 287-319 22-54 (206)
69 PF13688 Reprolysin_5: Metallo 24.9 49 0.0011 30.9 2.1 15 299-313 140-154 (196)
70 PF13402 M60-like: Peptidase M 23.5 1.4E+02 0.0031 30.0 5.4 107 232-346 144-259 (307)
71 PF09836 DUF2063: Uncharacteri 23.2 53 0.0011 26.6 1.7 30 402-431 55-84 (94)
72 PRK15245 type III effector pho 23.1 2.1E+02 0.0046 26.8 5.6 116 148-284 90-215 (241)
73 KOG3607 Meltrins, fertilins an 23.0 1.9E+02 0.0042 33.1 6.6 89 220-313 242-335 (716)
74 PF15641 Tox-MPTase5: Metallop 22.9 1.5E+02 0.0032 23.5 3.9 19 300-318 63-82 (109)
75 KOG4680 Uncharacterized conser 22.5 4.9E+02 0.011 22.8 7.3 18 89-106 109-126 (153)
76 KOG2719 Metalloprotease [Gener 22.2 1.1E+02 0.0024 32.3 4.1 15 299-313 278-292 (428)
77 PF08766 DEK_C: DEK C terminal 21.8 95 0.0021 22.2 2.6 38 408-445 2-39 (54)
78 PF14891 Peptidase_M91: Effect 21.7 61 0.0013 29.8 2.0 15 300-314 102-116 (174)
No 1
>KOG1046 consensus Puromycin-sensitive aminopeptidase and related aminopeptidases [Amino acid transport and metabolism; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-121 Score=1037.60 Aligned_cols=596 Identities=54% Similarity=0.862 Sum_probs=545.5
Q ss_pred ccCCCCCCCCCceeeeEEEEEEecCCCCeEEEEEEEEEEEECCcCEEEEEecCeeeeEEEeeeeccCCCccccceeEEEe
Q 007232 3 EFKGQPRLPKFAVPKRYDIRLTPDLTSCKFGGSVAIDVDVVGDTKFIVLNAADLTINNRSVSFTNKVSSKALEPTKVELV 82 (612)
Q Consensus 3 ~~~~~~rLp~~~~p~~Y~l~l~~d~~~~~f~G~v~I~~~~~~~~~~i~L~~~~l~i~~v~i~~~~~~~~~~~~~~~~~~~ 82 (612)
++++.+|||+.++|+||+|.|.+++....|.|++.|.+++.++++.|+||+.++.|.++.+...................
T Consensus 24 ~~~~~~rLP~~v~P~~Y~l~l~~~l~~~~f~G~v~I~l~v~~~t~~i~Lh~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~ 103 (882)
T KOG1046|consen 24 KFPNEYRLPTNVVPLHYDLTLKPDLEEFTFTGSVKISLEVSEATRFIVLHAKDLKITSASLVSRPSSGSVQLEVSVEEKE 103 (882)
T ss_pred cccccccCCCCCCCceeEEEEecCCcCCcceeEEEEEEEEecccCEEEEEhhhccceeEEEEecCCCCcccccccccccc
Confidence 34578999999999999999999999999999999999999999999999999999999987642211111111111111
Q ss_pred cCceEEEEEeCCccCCc-eEEEEEEEEeeecCCCCceEEeeecc-CCeeeeeeeeccCcCCCCceeeecCCCCCeeEEEE
Q 007232 83 EADEILVLEFAETLPTG-MGVLAIGFEGVLNDKMKGFYRSSYEL-NGEKKNMAVTQFEPADARRCFPCWDEPACKATFKI 160 (612)
Q Consensus 83 ~~~~~l~i~l~~~l~~g-~~~l~i~y~g~~~~~~~G~~~~~~~~-~g~~~~~~~t~~~p~~ar~~fPc~Dep~~ka~f~l 160 (612)
.. +.+.+.+++++.+| +|+|.|.|.|+++++..|||+++|.+ ++..+++++|||||++||++|||||||.+||+|.|
T Consensus 104 ~~-~~l~~~~~~~l~~~~~y~L~i~f~g~l~~~~~G~y~s~y~~~~~~~~~~~~Tqfept~AR~~FPCfDeP~~KAtF~I 182 (882)
T KOG1046|consen 104 QE-ETLVFPLNETLLAGSSYTLTIEFTGKLNDSSEGFYRSSYTDSEGSEKSIAATQFEPTDARRAFPCFDEPAFKATFTI 182 (882)
T ss_pred cc-eEEEEEcccccccCCeEEEEEEEeEeecCCcceeeeecccCCCCceEEEEEeccCccchhhcCCCCCcccccCceEE
Confidence 11 67889999999999 79999999999999999999999987 45668999999999999999999999999999999
Q ss_pred EEEeCCCCeEeecCcccce-eecCCeEEEEEecCCCcceeEEEEEEeeeeeeecccCCCeEEEEEEeCCchhhHHHHHHH
Q 007232 161 TLDVPSELVALSNMPVIDE-KVDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGKFALNV 239 (612)
Q Consensus 161 ~i~~p~~~~~isn~~~~~~-~~~~~~~~~~f~~t~~~s~yl~a~~vg~f~~~~~~~~~~~~v~v~~~~~~~~~~~~~l~~ 239 (612)
+|.||++++|+|||++.++ ..++++++++|++||+||+|++||+||+|++.+..+..|+++|+|++|+...+.+++++.
T Consensus 183 tl~hp~~~~aLSNm~v~~~~~~~~~~~~~~F~~Tp~MstYLvAf~V~~f~~~e~~~~~~v~vrv~a~p~~~~~~~~al~~ 262 (882)
T KOG1046|consen 183 TLVHPKGYTALSNMPVIKEEPVDDGWKTTTFEKTPKMSTYLVAFAVGDFVYVETITKSGVPVRVYARPEKINQGQFALEV 262 (882)
T ss_pred EEEecCCceEeecCcccccccccCCeeEEEEEecCCCchhhheeeeeccccceeecCCCceEEEEeChHHhhHHHHHHHH
Confidence 9999999999999998865 445559999999999999999999999999999888889999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCcCCCCccEEEecCCCccchhcccceeeecccccccCCCChHHHHHHHHHHHHHHHHHHHhcCccC
Q 007232 240 AVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVT 319 (612)
Q Consensus 240 ~~~~l~~~e~~fg~~yP~~k~d~V~~p~~~~~ame~~gli~~~~~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGnlVt 319 (612)
+.+++++|+++||++||++|+|+|++|+|..|||||||||+|++..+|++++.++...+++++.+||||+|||||||+||
T Consensus 263 ~~~~L~~~e~~f~i~yPLpK~D~iavPdf~~GAMENwGLvtyre~~lL~~~~~ss~~~k~~va~vIaHElAHQWFGNLVT 342 (882)
T KOG1046|consen 263 ATKVLEFYEDYFGIPYPLPKLDLVAVPDFSAGAMENWGLVTYRETALLYDPQTSSSSNKQRVAEVIAHELAHQWFGNLVT 342 (882)
T ss_pred HHHHHHHHHHHhCCCCCCccccEEecCCccccchhcCcceeeeehhhccCCCcCcHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhHHhhhHHHHHHHHHhhhcCCchhhHHHHHHHHH-hhhcccccCCCCCceeecCCccccccccceeeeechhHH
Q 007232 320 MEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECT-EGLRLDGLAESHPIEVEVNHTGEIDEIFDAISYRKGASV 398 (612)
Q Consensus 320 ~~~w~d~WL~EGfA~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~pl~~~~~~~~~~~~~f~~i~Y~Kg~~v 398 (612)
|+||+|+|||||||+|+++++++..+|+|..+++++.+.. .++..|+..++||+..++.++.++.+.||.++|.||++|
T Consensus 343 m~wW~dLWLnEGfAt~~~~~~v~~~~p~~~~~~~~~~~~l~~~l~~D~l~~shpi~~~v~~~~ei~e~fd~i~Y~KGasv 422 (882)
T KOG1046|consen 343 MKWWNDLWLNEGFATYVEYLAVDHLFPEWDIWEQFLLENLERVLSLDALASSHPISVPVESPSEIDEIFDEISYQKGASV 422 (882)
T ss_pred HhhhhhhhhcccHHHHHHHHhhccCCcchhhHHHHHHHHHHHHhhhhcccccCCeeeecCCcchhhhhhhhhhhhHHHHH
Confidence 9999999999999999999999999999999999887777 579999999999999999999999999999999999999
Q ss_pred HHHHHHhhCHHHHHHHHHHHHHHhccCCCCHHHHHHHHHhccCCCHHHHHHHHhcCCCceEEEEEEeCcEEEEEEEEeec
Q 007232 399 IRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKLMNSWTKQKGYPVISVKVKEEKLELEQSQFLS 478 (612)
Q Consensus 399 l~mL~~~lG~~~F~~~l~~yl~~~~~~~~~~~df~~~l~~~~~~~l~~~~~~W~~~~g~P~l~v~~~~~~~~i~Q~~f~~ 478 (612)
+|||+..+|++.|++||+.|+.+|+|+|++++|||++|+...+.+++++|+.|+.|+|||+++|.++++.++++|+||..
T Consensus 423 lRML~~~lGe~~F~~gi~~yL~~~~y~na~~~DLw~~l~~~~~~~v~~~M~~Wt~Q~G~Pvv~V~~~~~~~~l~Q~rf~~ 502 (882)
T KOG1046|consen 423 LRMLESLLGEEVFRKGLRSYLKKHQYSNAKTEDLWDALEEGSGLDVSELMDTWTKQMGYPVVTVERNGDSLTLTQERFLS 502 (882)
T ss_pred HHHHHHHHCHHHHHHHHHHHHHHhccCCCCchhHHHHHhccCCCCHHHHHhhhhcCCCCceEEEEecCCEEEEehhhhcc
Confidence 99999999999999999999999999999999999999988999999999999999999999999999999999999987
Q ss_pred CCC--CCCCeEEEEEEEEECcccceeeEEeeccceEEEecccccccccCCCCCCceEEeccCceEEEEEEcCHHHHHHHH
Q 007232 479 SGS--PGDGQWIVPITLCCGSYDVCKNFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQTGFYRVKYDKDLAARLG 556 (612)
Q Consensus 479 ~~~--~~~~~w~iPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~N~~~~gyyrV~Yd~~~w~~l~ 556 (612)
... .....|+||+++.+...+.....++..++..+.++. .. +||++|.++.|||||+||.++|+.|+
T Consensus 503 ~~~~~~~~~~w~iPl~~~~~~~~~~~~~~~~~~~~~~~l~~---------~~--~wi~~N~~~~g~yRV~Yd~~~w~~l~ 571 (882)
T KOG1046|consen 503 DPDPSEDNYLWWIPLTYTTSGSGSVPKFWLSSKSTTIKLPE---------SD--QWIKVNLEQTGYYRVNYDDENWALLI 571 (882)
T ss_pred CCCccccCcccceeEEEEcCCCCccceeeecCCCcceecCC---------CC--eEEEEeCCcceEEEEEeCHHHHHHHH
Confidence 654 334699999999887655445577777777777764 33 69999999999999999999999999
Q ss_pred HHHHc-CCCChhhHHHHHHHHHHHHHhcCCCHHHHHHHHHhcCcCCCHhHHHHhh
Q 007232 557 YAIEM-KQLSETDRFGILDDHFALCMARQQTLTSLLTLMASYSEETEYTVLSNLI 610 (612)
Q Consensus 557 ~~l~~-~~i~~~~r~~li~D~~~l~~~g~l~~~~~~~l~~~l~~e~~~~~w~~~~ 610 (612)
++|.. +.+++.+|++||+|+|+|+++|+++++.+|+++.||.+|++|.||..+.
T Consensus 572 ~~l~~~~~~~~~~Ra~li~D~~~la~~~~~~~~~~l~l~~~l~~e~~~~p~~~~~ 626 (882)
T KOG1046|consen 572 EQLKNHESLSVIDRAQLINDAFALARAGRLPYSIALNLISYLKNETDYVPWSAAI 626 (882)
T ss_pred HHHhhcCccCHhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhcccccchHHHHH
Confidence 99977 6799999999999999999999999999999999999999999998763
No 2
>TIGR02412 pepN_strep_liv aminopeptidase N, Streptomyces lividans type. This family is a subset of the members of the zinc metallopeptidase family M1 (pfam01433), with a single member characterized in Streptomyces lividans 66 and designated aminopeptidase N. The spectrum of activity may differ somewhat from the aminopeptidase N clade of E. coli and most other Proteobacteria, well separated phylogenetically within the M1 family. The M1 family also includes leukotriene A-4 hydrolase/aminopeptidase (with a bifunctional active site).
Probab=100.00 E-value=1.7e-105 Score=907.58 Aligned_cols=567 Identities=27% Similarity=0.420 Sum_probs=479.0
Q ss_pred CceeeeEEEEEEecCCCC--eEEEEEEEEEEEECCcCEEEEEecCeeeeEEEeeeeccCCCccccceeEEEecCceEEEE
Q 007232 13 FAVPKRYDIRLTPDLTSC--KFGGSVAIDVDVVGDTKFIVLNAADLTINNRSVSFTNKVSSKALEPTKVELVEADEILVL 90 (612)
Q Consensus 13 ~~~p~~Y~l~l~~d~~~~--~f~G~v~I~~~~~~~~~~i~L~~~~l~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~l~i 90 (612)
.+.+.||+|+|+++.+.. .+.|+++|+|++.++++.|.||+.+++|++|.+++. ..+.....+ ..|
T Consensus 13 ~~~~~~Y~l~l~l~~~~~~~~~~~~~~i~~~~~~~~~~l~LD~~~l~I~~v~vng~----------~~~~~~~~~--~~i 80 (831)
T TIGR02412 13 LITVEHYEIALDLTGADEFFATRCVSTNTVRLSEPGADTFLDLLAAQIESVTLNGI----------LDVAPVYDG--SRI 80 (831)
T ss_pred hccceeEEEEEEccCCccccccceEEEEEEEEcCCCCcEEEEccCCEEEEEEECCc----------ccCccccCC--CEE
Confidence 467999999999876544 558999999999888999999999999999998641 111221222 346
Q ss_pred EeCCccCCceEEEEEEEEeeecCCCCceEEeeeccCCeeeeeeeeccCcCCCCceeeecCCCCCeeEEEEEEEeCCCCeE
Q 007232 91 EFAETLPTGMGVLAIGFEGVLNDKMKGFYRSSYELNGEKKNMAVTQFEPADARRCFPCWDEPACKATFKITLDVPSELVA 170 (612)
Q Consensus 91 ~l~~~l~~g~~~l~i~y~g~~~~~~~G~~~~~~~~~g~~~~~~~t~~~p~~ar~~fPc~Dep~~ka~f~l~i~~p~~~~~ 170 (612)
.++. |++|.++|+|.|.+.+++...|+|+..+..+|. ++++|||||.+||+||||||+|.+||+|+++|++|++|+|
T Consensus 81 ~l~~-l~~g~~~l~i~~~~~~~~~~~Gl~~~~~~~~g~--~~~~Tq~ep~~Ar~~fPcfDeP~~KAtf~ltit~p~~~~v 157 (831)
T TIGR02412 81 PLPG-LLTGENTLRVEATRAYTNTGEGLHRFVDPVDGE--VYLYTQFEPADARRVFAVFDQPDLKANFKFSVKAPEDWTV 157 (831)
T ss_pred EccC-CCCCceEEEEEEEEEecCCCceEEEEEeCCCCe--EEEEECCCCcCceeeEecCCCCCCceeEEEEEEECCCceE
Confidence 6666 777889999999999999999999865544443 7789999999999999999999999999999999999999
Q ss_pred eecCcccceeecCCeEEEEEecCCCcceeEEEEEEeeeeeeecccCCCeEEEEEEeCCchhh--HHHHHHHHHHHHHHHH
Q 007232 171 LSNMPVIDEKVDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQ--GKFALNVAVKTLELYK 248 (612)
Q Consensus 171 isn~~~~~~~~~~~~~~~~f~~t~~~s~yl~a~~vg~f~~~~~~~~~~~~v~v~~~~~~~~~--~~~~l~~~~~~l~~~e 248 (612)
+|||++.+....++.++++|..|||||+|++||++|+|..++. ..+|+++++|++|+..+. ++++++.+.+++++|+
T Consensus 158 ~sNg~~~~~~~~~~~~~~~F~~t~pmstYL~a~~vG~f~~~~~-~~~gvpi~v~~~~~~~~~~~~~~al~~~~~~l~~~e 236 (831)
T TIGR02412 158 ISNSRETDVTPEPADRRWEFPETPKLSTYLTAVAAGPYHSVQD-ESRSYPLGIYARRSLAQYLDADAIFTITRQGLAFFH 236 (831)
T ss_pred ECCCccccccccCCCeEEEecCCCCcccceEEEEEeceEEEee-cCCCEEEEEEECcchhhhhhHHHHHHHHHHHHHHHH
Confidence 9999987665556678899999999999999999999999874 457899999999987654 5689999999999999
Q ss_pred HHhCCCcCCCCccEEEecCCCccchhcccceeeecccccccCCCChHHHHHHHHHHHHHHHHHHHhcCccCccccchhHH
Q 007232 249 EYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVTMEWWTHLWL 328 (612)
Q Consensus 249 ~~fg~~yP~~k~d~V~~p~~~~~ame~~gli~~~~~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGnlVt~~~w~d~WL 328 (612)
++||+|||++|+|+|++|+|..|||||||+|+|++. +++.+.. +...++.+..+|+||+|||||||+|||+||+|+||
T Consensus 237 ~~fg~pYP~~k~d~V~vP~f~~GaMEn~Glit~~e~-~l~~~~~-~~~~~~~~~~viaHElAHqWFGnlVT~~wW~dlWL 314 (831)
T TIGR02412 237 RKFGYPYPFKKYDQIFVPEFNAGAMENAGCVTFAEN-FLHRAEA-TRAEKENRAGVILHEMAHMWFGDLVTMRWWNDLWL 314 (831)
T ss_pred HHhCCCCCcccCCEEEcCCCCCCcccccceeeechh-hccCCcC-CHHHHHHHHHHHHHHHHHHHhCCEeccccccchhH
Confidence 999999999999999999999999999999999999 5555443 34556678899999999999999999999999999
Q ss_pred hhhHHHHHHHHHhhhcCCchhhHHHHHHHHH-hhhcccccCCCCCceeecCCccccccccceeeeechhHHHHHHHHhhC
Q 007232 329 NEGFATWVSYLAADSLFPEWKIWTQFLDECT-EGLRLDGLAESHPIEVEVNHTGEIDEIFDAISYRKGASVIRMLQNYLG 407 (612)
Q Consensus 329 ~EGfA~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~pl~~~~~~~~~~~~~f~~i~Y~Kg~~vl~mL~~~lG 407 (612)
|||||+|++++++++..|++..|..|..... .++..|+...+||+..++.++.++...|+.++|.||+++|+||+..||
T Consensus 315 nEGFAty~e~~~~~~~~~~~~~~~~f~~~~~~~a~~~D~~~~t~Pi~~~~~~~~~~~~~fd~isY~KGa~vL~mL~~~lG 394 (831)
T TIGR02412 315 NESFAEYMGTLASAEATEYTDAWTTFAAQGKQWAYEADQLPTTHPIVADVADLADALSNFDGITYAKGASVLKQLVAWVG 394 (831)
T ss_pred HHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhcccCCCCCccCCCCHHHHHHhccCccchhHHHHHHHHHHHHC
Confidence 9999999999999999998888888876554 567889999999999888888888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCCHHHHHHHHHhccCCCHHHHHHHHhcCCCceEEEEEEeC--cEEE-EEEEEeecCCCCCC
Q 007232 408 AECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKLMNSWTKQKGYPVISVKVKE--EKLE-LEQSQFLSSGSPGD 484 (612)
Q Consensus 408 ~~~F~~~l~~yl~~~~~~~~~~~df~~~l~~~~~~~l~~~~~~W~~~~g~P~l~v~~~~--~~~~-i~Q~~f~~~~~~~~ 484 (612)
++.|+++||.|+++|+|+|++++|||+++++++|.++++||++|++++|+|+++|+++. +.++ +.|.+ .+ ..
T Consensus 395 ee~F~~glr~Yl~~~~~~nat~~Dl~~~l~~~sg~dl~~~~~~W~~~~G~P~l~v~~~~~~~~~~~~~~~~---~~--~~ 469 (831)
T TIGR02412 395 EEAFFAGVNAYFKRHAFGNATLDDLIDSLAKASGRDLSAWSDAWLETAGVNTLTPEITTDGGVVSALYPES---SG--PP 469 (831)
T ss_pred HHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHcCCCCceEEEEEEECCCeEEEEEEec---CC--CC
Confidence 99999999999999999999999999999999999999999999999999999998753 4444 22221 11 12
Q ss_pred CeEEEEEEEEECccccee-----eEEeeccceEEEecccccccccCCCCCCceEEeccCceEEEEEEcCHHHHHHHHHHH
Q 007232 485 GQWIVPITLCCGSYDVCK-----NFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQTGFYRVKYDKDLAARLGYAI 559 (612)
Q Consensus 485 ~~w~iPl~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~N~~~~gyyrV~Yd~~~w~~l~~~l 559 (612)
..|.|||.+....+.... .+.+...... ++... +..+. +||++|.++.|||||+||+++|..|+++|
T Consensus 470 ~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~--~~v~~N~~~~gyyrv~yd~~~~~~l~~~l 541 (831)
T TIGR02412 470 RPHRIAIGLYDLDRDDLRRTTLVPLTISGERTA--VPQLV----GKRAP--ALVLLNDDDLTYAKVRLDPTSFDTVLAAL 541 (831)
T ss_pred CCeeEEEeeeecCCCcceeeeEEEEEEecCcee--ehhhc----CCCCC--CEEEEeCCCcEEEEEECCHHHHHHHHHHh
Confidence 469999998654332111 1334332221 22110 11233 79999999999999999999999999999
Q ss_pred HcCCCChhhHHHHHHHHHHHHHhcCCCHHHHHHHH-HhcCcCCCHhHHHHhhc
Q 007232 560 EMKQLSETDRFGILDDHFALCMARQQTLTSLLTLM-ASYSEETEYTVLSNLIT 611 (612)
Q Consensus 560 ~~~~i~~~~r~~li~D~~~l~~~g~l~~~~~~~l~-~~l~~e~~~~~w~~~~~ 611 (612)
.. ..++.+|++|++|+|+++++|.++++.+|+++ .||++|+++.||..++.
T Consensus 542 ~~-~~~~~~R~~l~~d~~~~~~~g~~~~~~~l~l~~~~l~~E~~~~v~~~~~~ 593 (831)
T TIGR02412 542 SK-LPDPLSRAVVWASLWDSVRDGELSPDDYLSTVFAHVPSETDYAVVQQVLS 593 (831)
T ss_pred hh-CCChhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHhccCCCchHHHHHHHH
Confidence 53 23799999999999999999999999999965 89999999999998754
No 3
>COG0308 PepN Aminopeptidase N [Amino acid transport and metabolism]
Probab=100.00 E-value=2.7e-84 Score=733.53 Aligned_cols=571 Identities=37% Similarity=0.601 Sum_probs=481.8
Q ss_pred CCCCCcee-ee--EEEEEEecCC--CCeEEEEEEEEEEE--ECCcCEEEEEecCeeeeEEEeeeeccCCCccccceeEEE
Q 007232 9 RLPKFAVP-KR--YDIRLTPDLT--SCKFGGSVAIDVDV--VGDTKFIVLNAADLTINNRSVSFTNKVSSKALEPTKVEL 81 (612)
Q Consensus 9 rLp~~~~p-~~--Y~l~l~~d~~--~~~f~G~v~I~~~~--~~~~~~i~L~~~~l~i~~v~i~~~~~~~~~~~~~~~~~~ 81 (612)
.++..+.| .+ |++.|+++.. +..|+|+++|++.. ..+...|+||+.+|+|.++++++... .. .+.+
T Consensus 12 ~~~~~~~~~~~~i~~~~Ld~~~~~~~~~~~g~~~i~~~~~~~~~~~~lvld~~~l~i~~v~idg~~~------~~-~~~~ 84 (859)
T COG0308 12 ALSLDYRPPEYAIYDIDLDLDLDPEKTTFEGSVTIRLDAGWRSGADPLVLDAVGLEIRSVKIDGKAL------TA-WYRL 84 (859)
T ss_pred cccccCCCccccccceEEEeeecCCccEEEEEEEEEEeccccCCCCeEEEeccccEEEEEEEcCccc------cc-cccc
Confidence 34444555 66 7777765544 58999999999987 34444499999999999999986321 11 2233
Q ss_pred ecCceEEEEEeCCc--c---CCceEEEEEEEEeeec-CCCCceEEeeeccCCeeeeeeeeccCcCCCCceeeecCCCCCe
Q 007232 82 VEADEILVLEFAET--L---PTGMGVLAIGFEGVLN-DKMKGFYRSSYELNGEKKNMAVTQFEPADARRCFPCWDEPACK 155 (612)
Q Consensus 82 ~~~~~~l~i~l~~~--l---~~g~~~l~i~y~g~~~-~~~~G~~~~~~~~~g~~~~~~~t~~~p~~ar~~fPc~Dep~~k 155 (612)
+. +.+.+....+ + .++...+.+.+.+... ....|+|++.+.. ..+++||||+.+||+||||+|+|+.|
T Consensus 85 ~~--~~~~i~~~~~~~~~~~~~~~l~i~~~~~~~~s~~~~~Gly~~~~~~----~~~~~TQ~Ea~~aR~~fpc~D~P~~k 158 (859)
T COG0308 85 DG--DALTITVAPPIPERSERPFTLAITYEFTGPVSNDTLEGLYRSGYGG----KPYLITQCEAEGARRIFPCIDEPDVK 158 (859)
T ss_pred cC--ccceeeeccccccccCCCccEEEEEEecccccCccccceeecCCCC----CeeEEeecccCCCceeeecCCCCCCc
Confidence 33 3333332222 2 2346778888887776 6788999887543 57889999999999999999999999
Q ss_pred eEEEEEEEeCCCCeEeecCcccceeec-CCeEEEEEecCCCcceeEEEEEEeeeeeeecccC---CCeEEEEEEeCCchh
Q 007232 156 ATFKITLDVPSELVALSNMPVIDEKVD-GNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTS---DGIKVRVYCQVGKAN 231 (612)
Q Consensus 156 a~f~l~i~~p~~~~~isn~~~~~~~~~-~~~~~~~f~~t~~~s~yl~a~~vg~f~~~~~~~~---~~~~v~v~~~~~~~~ 231 (612)
|+|+++|..++++.++|||+....... +++++++|..++|||||++|+++|+|..++.... +++++++|++++...
T Consensus 159 atf~~~i~~~k~~~~iSN~~~~~~~~~~~g~~~~~f~~~~~mptYL~al~~G~~~~~~~~~~~~~~~v~l~iy~~~g~~~ 238 (859)
T COG0308 159 ATFTLTIRADKGPKLISNGNLIDGGTLVDGRKIVKFEDTPPMPTYLFALVAGDLEVFRDKFDTRSRDVPLEIYVPPGVLD 238 (859)
T ss_pred ceeEEEEEecCcceeeecCCccccccccCCcEEEEEcCCCCcchHhhheeeecceeeeeeeccCCCCeeEEEEecCcchh
Confidence 999999999999999999998876443 5589999999999999999999999988775432 479999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCcCCCCccEEEecCCCccchhcccceeeecccccccCCCChHHHHHHHHHHHHHHHHH
Q 007232 232 QGKFALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAH 311 (612)
Q Consensus 232 ~~~~~l~~~~~~l~~~e~~fg~~yP~~k~d~V~~p~~~~~ame~~gli~~~~~~ll~~~~~~~~~~~~~~~~~iaHElaH 311 (612)
.++++++.+.+++++||++||+|||+++ ++|++|+|+.|||||||+++|++..++.++..+....++++..+|+||+||
T Consensus 239 ~a~~~~~~~~~~~~~~e~~fg~~y~l~~-~~V~v~~f~~GaMEN~Gl~tf~~~~ll~~~~~at~~~~~~~~~viaHElaH 317 (859)
T COG0308 239 RAKYALDETKRSIEFYEEYFGLPYALPI-DIVAVPDFSAGAMENWGLVTFREKYLLADPETATDSDYENVEEVIAHELAH 317 (859)
T ss_pred hhhhhHHHHHHHhhhHHHhcCCCCCCcc-cEEeccCCCCccccccceeEEeeeEEeeCcccchhHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999 999999999999999999999999999988777777778899999999999
Q ss_pred HHhcCccCccccchhHHhhhHHHHHHHHHhhhcCC-chhhHHHHHHHHHh-hhcccccCCCCCceeecCCccccccccce
Q 007232 312 QWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFP-EWKIWTQFLDECTE-GLRLDGLAESHPIEVEVNHTGEIDEIFDA 389 (612)
Q Consensus 312 qWfGnlVt~~~w~d~WL~EGfA~y~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~d~~~~~~pl~~~~~~~~~~~~~f~~ 389 (612)
|||||+||++||+++|||||||+|++..+.+.+.+ .+..|..+...... ++..|+...+||+.....++.+++..||.
T Consensus 318 qWfGnlVT~~~W~~lWLnEgfat~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~hPi~~~~~~~~ei~~~fD~ 397 (859)
T COG0308 318 QWFGNLVTMKWWDDLWLNEGFATFREVLWSEDLGGRAWKRWEDFRTLRTSIALAEDSLPSSHPIRVDVYDPKEINDFFDA 397 (859)
T ss_pred hcccceeeccCHHHHHHhhhhHHHHHHHHHHHhcchHHHHHHHHHHHhhhHHHhhccccccCCcccCCCCccchhhhcch
Confidence 99999999999999999999999999999999999 88888887766554 78889999999999999999999999999
Q ss_pred eeeechhHHHHHHHHhhCHHHHHHHHHHHHHHhccCCCCHHHHHHHHHhccCCCHHHHHHHHhcCCCceEEEEEEeCc-E
Q 007232 390 ISYRKGASVIRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKLMNSWTKQKGYPVISVKVKEE-K 468 (612)
Q Consensus 390 i~Y~Kg~~vl~mL~~~lG~~~F~~~l~~yl~~~~~~~~~~~df~~~l~~~~~~~l~~~~~~W~~~~g~P~l~v~~~~~-~ 468 (612)
++|.||++|+|||+..+|++.|+++|+.|+++|++++++++|||+++++++|+++.++|..|+.|+|+|++.|+...+ .
T Consensus 398 i~Y~KGs~vlrml~~~lG~e~F~kgl~~yf~~h~~~~~~~~Dl~~a~~~~sg~dl~~~~~~w~~q~G~P~l~v~~~~~~~ 477 (859)
T COG0308 398 IVYEKGASVLRMLETLLGEEAFRKGLSLYFKRHAGGNATTMDLWKALEDASGKDLSAFFESWLSQAGYPVLTVSVRYDDF 477 (859)
T ss_pred hhcchhHHHHHHHHHHHCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhCCcHHHHHHHHHhCCCCCceeeeeecccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999887 7
Q ss_pred EEEEEEEeecCCCCCCCeEEEEEEEEECcccceeeEEeeccceEEEecccccccccCCCCCCceEEeccCceEEEEEEcC
Q 007232 469 LELEQSQFLSSGSPGDGQWIVPITLCCGSYDVCKNFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQTGFYRVKYD 548 (612)
Q Consensus 469 ~~i~Q~~f~~~~~~~~~~w~iPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~N~~~~gyyrV~Yd 548 (612)
++++|.||...+..+...|.||+.+............+.+...++.+.... ..+- .-+++|....++|++.|+
T Consensus 478 ~~l~~~q~~~~~~~~~~~~~iPl~~~~~~~~~~~~~~~~~~~~t~~~~~~~-----~~~~--~~~~~~~~~~~~~~~~y~ 550 (859)
T COG0308 478 FKLTQKQFTPPGQEEKRPWPIPLAIKLLDGGGVKVLLLTEGEQTVTFELVG-----IPPF--PSLKVNDSAPVFYRVDYS 550 (859)
T ss_pred EEEEEEEeccCCCccCceeeeccEEEecCCCCceeeeeeccceEEEEeccc-----CCcc--ceeeccCCccceEEEecC
Confidence 999999998776344559999999977644322334455555566665421 1111 368899999999999999
Q ss_pred HHHHHHHHHHHHcCCCChhhHHHHHHHHHHHHHhcCCCHHHHHHHHHhcCcCCC
Q 007232 549 KDLAARLGYAIEMKQLSETDRFGILDDHFALCMARQQTLTSLLTLMASYSEETE 602 (612)
Q Consensus 549 ~~~w~~l~~~l~~~~i~~~~r~~li~D~~~l~~~g~l~~~~~~~l~~~l~~e~~ 602 (612)
.+.|..+++... .+....|+.++.|..++..+|+.+...+...+...-++..
T Consensus 551 ~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 602 (859)
T COG0308 551 DQSLSKLLQHDP--RLEAAQRLALVADRRALTAAGKGSAEDKLALVSRAFNAEL 602 (859)
T ss_pred HHHHHHHHhhhh--hhhHHHHHhhhhhHHHHHHhcccchhHHHHHHHHHhhhhh
Confidence 999998877643 6889999999999999999999998888877665444433
No 4
>TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type. The M1 family of zinc metallopeptidases contains a number of distinct, well-separated clades of proteins with aminopeptidase activity. Several are designated aminopeptidase N, EC 3.4.11.2, after the Escherichia coli enzyme, suggesting a similar activity profile. This family consists of all aminopeptidases closely related to E. coli PepN and presumed to have similar (not identical) function. Nearly all are found in Proteobacteria, but members are found also in Cyanobacteria, plants, and apicomplexan parasites. This family differs greatly in sequence from the family of aminopeptidases typified by Streptomyces lividans PepN (TIGR02412), from the membrane bound aminopeptidase N family in animals, etc.
Probab=100.00 E-value=6.1e-83 Score=712.71 Aligned_cols=508 Identities=24% Similarity=0.335 Sum_probs=411.6
Q ss_pred CCCceeeeEEEEEEecCCCCeEEEEEEEEEEEECCcCEEEEEecCeeeeEEEeeeeccCCCccccceeEEEecCceEEEE
Q 007232 11 PKFAVPKRYDIRLTPDLTSCKFGGSVAIDVDVVGDTKFIVLNAADLTINNRSVSFTNKVSSKALEPTKVELVEADEILVL 90 (612)
Q Consensus 11 p~~~~p~~Y~l~l~~d~~~~~f~G~v~I~~~~~~~~~~i~L~~~~l~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~l~i 90 (612)
|..+...||+|+|+++++...++|+++|++++..+.+.|+||+.+|+|.+|.+++. .+. ...+...++.|+|
T Consensus 4 ~~~~~v~~~~L~l~l~~~~~~v~g~~~i~~~~~~~~~~l~Ld~~~L~I~sV~v~g~------~~~--~~~~~~~~~~L~I 75 (863)
T TIGR02414 4 PPPFLIEKTHLDFDLHEEETVVRARLTVRRNPDGNGAPLVLDGEELKLLSIAIDGK------PLA--AGDYQLDDETLTI 75 (863)
T ss_pred CCCceEEEEEEEEEEeCCCeEEEEEEEEEEecCCCCCcEEEEecCCEEEEEEECCE------ecC--cceEEEcCCEEEE
Confidence 55688999999999999999999999999998766778999999999999999652 111 1335555677888
Q ss_pred EeCCccCCceEEEEEEEEeee--cCCCCceEEeeeccCCeeeeeeeeccCcCCCCceeeecCCCCCeeEEEEEEEeCCC-
Q 007232 91 EFAETLPTGMGVLAIGFEGVL--NDKMKGFYRSSYELNGEKKNMAVTQFEPADARRCFPCWDEPACKATFKITLDVPSE- 167 (612)
Q Consensus 91 ~l~~~l~~g~~~l~i~y~g~~--~~~~~G~~~~~~~~~g~~~~~~~t~~~p~~ar~~fPc~Dep~~ka~f~l~i~~p~~- 167 (612)
.. + ++.++|+|.|.+.. +....|+|++.+ +++|||||.+||++|||||+|++||+|+++|++|++
T Consensus 76 ~~---~-~~~~~l~i~~~~~p~~n~~l~GlY~s~~--------~~~TQ~Ep~gaR~ifpc~DeP~~kAtf~vtI~~p~~~ 143 (863)
T TIGR02414 76 AS---V-PESFTLEIETEIHPEENTSLEGLYKSGG--------NFCTQCEAEGFRRITYFPDRPDVMSRYTVTITADKKK 143 (863)
T ss_pred ee---C-CccEEEEEEEEeecccCCCCeEEEEeCC--------eEEEEecCCCCCcCCCCCCCCCCceEEEEEEEECCCc
Confidence 74 2 35799999997654 455789999753 578999999999999999999999999999999986
Q ss_pred C-eEeecCcccce-eecCCeEEEEEecCCCcceeEEEEEEeeeeeeecc----cCCCeEEEEEEeCCchhhHHHHHHHHH
Q 007232 168 L-VALSNMPVIDE-KVDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDH----TSDGIKVRVYCQVGKANQGKFALNVAV 241 (612)
Q Consensus 168 ~-~~isn~~~~~~-~~~~~~~~~~f~~t~~~s~yl~a~~vg~f~~~~~~----~~~~~~v~v~~~~~~~~~~~~~l~~~~ 241 (612)
| +++|||+++.. ...+++++++|+.++|||+|++||++|+|+.++.. ...++++++|++|+..+.++++++.++
T Consensus 144 y~v~lSNg~~~~~~~~~~g~~~~~f~~t~pmptYLfA~vaGdf~~~~~~~~t~sg~~v~l~iy~~p~~~~~~~~al~~~~ 223 (863)
T TIGR02414 144 YPVLLSNGNKIASGELPDGRHWAEWEDPFPKPSYLFALVAGDLDVLEDTFTTKSGREVALRVYVEEGNKDKCDHAMESLK 223 (863)
T ss_pred ceEEEeCCccccceecCCCeEEEEEeCCCCcChhHheEEEeCCEEEEEEeeccCCCceEEEEEEccCcHHHHHHHHHHHH
Confidence 6 66899987755 33567888999999999999999999999988742 234689999999999999999999999
Q ss_pred HHHHHHHHHhCCCcCCCCccEEEecCCCccchhcccceeeecccccccCCCChHHHHHHHHHHHHHHHHHHHhcCccCcc
Q 007232 242 KTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVTME 321 (612)
Q Consensus 242 ~~l~~~e~~fg~~yP~~k~d~V~~p~~~~~ame~~gli~~~~~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGnlVt~~ 321 (612)
+++++||++||.|||++|+++|++|+|..||||||||++|++..++.++...+...++.+..+||||+|||||||+|||+
T Consensus 224 ~~L~~~E~~fG~pYPl~k~diVavpdf~~GaMEN~GLi~f~e~~lL~~~~~~td~~~~~i~~VIaHElaHqWfGNlVT~~ 303 (863)
T TIGR02414 224 KAMKWDEEVFGLEYDLDIFMIVAVDDFNMGAMENKGLNIFNSKYVLADPETATDADYERIESVIAHEYFHNWTGNRVTCR 303 (863)
T ss_pred HHHHHHHHHhCCCCChhhccEEecCCCCCccccccceeccccceEEeCCCCCCHHHHHHHHHHHHHHHHHHHhcceeeec
Confidence 99999999999999999999999999999999999999999999998887666666777899999999999999999999
Q ss_pred ccchhHHhhhHHHHHHHHHhhhcCCchhhHHHHHHHHH-hhhcccccCCCCCceeecCCccccccccceeeeechhHHHH
Q 007232 322 WWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECT-EGLRLDGLAESHPIEVEVNHTGEIDEIFDAISYRKGASVIR 400 (612)
Q Consensus 322 ~w~d~WL~EGfA~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~pl~~~~~~~~~~~~~f~~i~Y~Kg~~vl~ 400 (612)
||+++|||||||+|++..+.....+............. ..+..|+...+||+.. ....+++..|+.++|.||++|+|
T Consensus 304 ~W~~LWLnEGfAty~e~~~~~~~~~~~~~~~~~~~~lr~~~f~~D~~p~~~Pi~~--~~~~~i~~~y~~i~Y~KGA~vLr 381 (863)
T TIGR02414 304 DWFQLSLKEGLTVFRDQEFSADMTSRAVKRIEDVRLLRAHQFPEDAGPMAHPVRP--ESYVEINNFYTATVYEKGAEVIR 381 (863)
T ss_pred chhhhhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhcccccccCCCCCC--cchhhHHhccchHHhHHHHHHHH
Confidence 99999999999999997665554432110000000011 2345577777788754 23456677899999999999999
Q ss_pred HHHHhhCHHHHHHHHHHHHHHhccCCCCHHHHHHHHHhccCCCHHHHHHHHhcCCCceEEEEEEeC----c--EEEEEEE
Q 007232 401 MLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKLMNSWTKQKGYPVISVKVKE----E--KLELEQS 474 (612)
Q Consensus 401 mL~~~lG~~~F~~~l~~yl~~~~~~~~~~~df~~~l~~~~~~~l~~~~~~W~~~~g~P~l~v~~~~----~--~~~i~Q~ 474 (612)
||+..||++.|+++|+.|+++|++++++++|||+++++++|.++.+|+ +|+.|+|+|+|+|++++ + +++++|.
T Consensus 382 ML~~~LGee~F~~gLr~Yl~r~~~~~at~~Df~~ale~asg~dL~~f~-~W~~q~G~P~v~v~~~yd~~~~~~~lt~~Q~ 460 (863)
T TIGR02414 382 MLHTLLGEEGFRKGMDLYFSRHDGQAVTCEDFVAAMEDASGRDLNQFR-RWYSQAGTPVLEVKENYDAAKKTYTLTVRQS 460 (863)
T ss_pred HHHHHhCHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhCCCHHHHH-HHHcCCCCceeEEEEEEcCCCCEEEEEEEEe
Confidence 999999999999999999999999999999999999999999999985 89999999999999863 2 4555665
Q ss_pred EeecCCCCCCCeEEEEEEEEEC--cccc-----------eeeEEeeccceEEEecccccccccCCCCCCceEEeccCceE
Q 007232 475 QFLSSGSPGDGQWIVPITLCCG--SYDV-----------CKNFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQTG 541 (612)
Q Consensus 475 ~f~~~~~~~~~~w~iPl~~~~~--~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~N~~~~g 541 (612)
+....+......|.|||.+..- ++.. ...+.++++++++.++.+.+ + -..-++.+.+.
T Consensus 461 ~~~~~~~~~~~~~~iPl~i~l~~~~G~~~~~~~~~~~~~~~~l~l~~~~~~f~f~~~~~------~---p~~sl~r~fsa 531 (863)
T TIGR02414 461 TPPTPGQTEKKPLHIPIAVGLLGPNGRKLMLSLDGERDTTRVLELTEAEQTFVFEGIAE------K---PVPSLLRGFSA 531 (863)
T ss_pred CCCCCCCCcCCceEEEEEEEEEeCCCCEeeecccCCCCcceEEEEccCEEEEEEcCCCC------C---CeeeecCCCCc
Confidence 4322233345589999998542 2221 12356777888888875321 1 24667888999
Q ss_pred EEEEEcCHH
Q 007232 542 FYRVKYDKD 550 (612)
Q Consensus 542 yyrV~Yd~~ 550 (612)
+-++.|+..
T Consensus 532 pv~l~~~~~ 540 (863)
T TIGR02414 532 PVNLEYPYS 540 (863)
T ss_pred eEEEeCCCC
Confidence 999987743
No 5
>PRK14015 pepN aminopeptidase N; Provisional
Probab=100.00 E-value=6.9e-82 Score=706.53 Aligned_cols=514 Identities=25% Similarity=0.362 Sum_probs=411.7
Q ss_pred cCCCCCCCCCceeeeEEEEEEecCCCCeEEEEEEEEEEE-ECCcCEEEEEecCeeeeEEEeeeeccCCCccccceeEEEe
Q 007232 4 FKGQPRLPKFAVPKRYDIRLTPDLTSCKFGGSVAIDVDV-VGDTKFIVLNAADLTINNRSVSFTNKVSSKALEPTKVELV 82 (612)
Q Consensus 4 ~~~~~rLp~~~~p~~Y~l~l~~d~~~~~f~G~v~I~~~~-~~~~~~i~L~~~~l~i~~v~i~~~~~~~~~~~~~~~~~~~ 82 (612)
++.+|+ |..+...||+|+|+++++...++|+++|+... .++.+.|+||+.+|+|.+|.+++.. +... .+.
T Consensus 10 ~~~dy~-~~~~~V~h~dL~l~ld~~~~~v~g~~~i~~~~~~~~~~~l~LD~~~L~I~sV~v~G~~------~~~~--~~~ 80 (875)
T PRK14015 10 YLKDYR-PPDYLIDTVDLDFDLDPDKTRVTARLQVRRNPDAAHSAPLVLDGEDLELLSLALDGQP------LAPS--AYE 80 (875)
T ss_pred ehhccC-CCCeEEEEEEEEEEEcCCCcEEEEEEEEEEccCCCCCceEEEEcCCCEEEEEEECCEE------cCcc--ceE
Confidence 344554 44588999999999999999999999999876 4567899999999999999987531 1111 444
Q ss_pred cCceEEEEEeCCccCCceEEEEEEEEeeec--CCCCceEEeeeccCCeeeeeeeeccCcCCCCceeeecCCCCCeeEEEE
Q 007232 83 EADEILVLEFAETLPTGMGVLAIGFEGVLN--DKMKGFYRSSYELNGEKKNMAVTQFEPADARRCFPCWDEPACKATFKI 160 (612)
Q Consensus 83 ~~~~~l~i~l~~~l~~g~~~l~i~y~g~~~--~~~~G~~~~~~~~~g~~~~~~~t~~~p~~ar~~fPc~Dep~~ka~f~l 160 (612)
.+++.|+|.. + ++.++|+|.|++... ....|+|++.+ +++|||||.+||+||||+|+|+.||+|++
T Consensus 81 ~~~~~L~I~~---l-~~~~~l~I~y~~~P~~n~~l~Gly~s~~--------~~~TQ~Ep~gAR~~fPc~D~P~~KAtf~i 148 (875)
T PRK14015 81 LDEEGLTIEN---L-PDRFTLEIETEIDPEANTALEGLYRSGG--------MFCTQCEAEGFRRITYFLDRPDVLARYTV 148 (875)
T ss_pred EcCCEEEEec---C-CccEEEEEEEEEecCCCCCceeeEEECC--------EEEEeccccCcCCcccCCCCCCCCeeEEE
Confidence 5567888872 2 346899999987653 44679998642 57899999999999999999999999999
Q ss_pred EEEeCC-CC-eEeecCccccee-ecCCeEEEEEecCCCcceeEEEEEEeeeeeeecc----cCCCeEEEEEEeCCchhhH
Q 007232 161 TLDVPS-EL-VALSNMPVIDEK-VDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDH----TSDGIKVRVYCQVGKANQG 233 (612)
Q Consensus 161 ~i~~p~-~~-~~isn~~~~~~~-~~~~~~~~~f~~t~~~s~yl~a~~vg~f~~~~~~----~~~~~~v~v~~~~~~~~~~ 233 (612)
+|++|+ .| +++|||+++++. ..+++++++|..++|||+|++||++|+|+.++.. ..+++++++|++|+..+.+
T Consensus 149 tI~~p~~~~~~~lSNG~l~~~~~~~~g~~~~~w~~~~PmpsYL~Al~aGdf~~~~d~~~~~~g~~vpl~iy~~p~~~~~~ 228 (875)
T PRK14015 149 RIEADKAKYPVLLSNGNLVESGELPDGRHWATWEDPFPKPSYLFALVAGDLDVLEDTFTTRSGREVALEIYVEPGNLDKC 228 (875)
T ss_pred EEEEccccCeEEecCCccccceeccCCeEEEEEEeCCCcccceEEEEEeCCEEEEEEeeccCCCeEEEEEEEeCCcHHHH
Confidence 999999 58 689999988764 4577889999999999999999999999987742 2345999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCcCCCCccEEEecCCCccchhcccceeeecccccccCCCChHHHHHHHHHHHHHHHHHHH
Q 007232 234 KFALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQW 313 (612)
Q Consensus 234 ~~~l~~~~~~l~~~e~~fg~~yP~~k~d~V~~p~~~~~ame~~gli~~~~~~ll~~~~~~~~~~~~~~~~~iaHElaHqW 313 (612)
+++++.+++++++||++||.|||++|+++|++|+|..||||||||++|++..++.+++..+...+..+..+||||+||||
T Consensus 229 ~~al~~~~~~L~~~E~~FG~pYP~~k~diVavp~f~~GaMEN~Gl~~f~~~~lL~~~~~~t~~~~~~i~~vIaHElaHqW 308 (875)
T PRK14015 229 DHAMDSLKKSMKWDEERFGLEYDLDIFMIVAVDDFNMGAMENKGLNIFNSKYVLADPETATDADYERIESVIAHEYFHNW 308 (875)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCChhhhCEEeCCCCCCcccccccccccccceEecCcccCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988888776555666778899999999999
Q ss_pred hcCccCccccchhHHhhhHHHHHHHHHhhhcCCc-hhhHHHHHHHHHhhhcccccCCCCCceeecCCccccccccceeee
Q 007232 314 FGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPE-WKIWTQFLDECTEGLRLDGLAESHPIEVEVNHTGEIDEIFDAISY 392 (612)
Q Consensus 314 fGnlVt~~~w~d~WL~EGfA~y~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~~~~pl~~~~~~~~~~~~~f~~i~Y 392 (612)
|||+||++||+++|||||||+|++..+.....+. ..............+..|+...++|+... ...+++..|+.++|
T Consensus 309 FGNlVT~~~W~dLWLnEGFAty~e~~~~~~~~~~~~~~~~~~~~l~~~~~~~D~~~~a~pi~p~--~~~~i~~~f~~~~Y 386 (875)
T PRK14015 309 TGNRVTCRDWFQLSLKEGLTVFRDQEFSADLGSRAVKRIEDVRVLRAAQFAEDAGPMAHPVRPD--SYIEINNFYTATVY 386 (875)
T ss_pred HhCcceecchhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccccccCCCCCCc--chhhHHhcccchhh
Confidence 9999999999999999999999987765544321 11100000000122444666666776532 33456778999999
Q ss_pred echhHHHHHHHHhhCHHHHHHHHHHHHHHhccCCCCHHHHHHHHHhccCCCHHHHHHHHhcCCCceEEEEEEeC----c-
Q 007232 393 RKGASVIRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKLMNSWTKQKGYPVISVKVKE----E- 467 (612)
Q Consensus 393 ~Kg~~vl~mL~~~lG~~~F~~~l~~yl~~~~~~~~~~~df~~~l~~~~~~~l~~~~~~W~~~~g~P~l~v~~~~----~- 467 (612)
.||+++||||+..||++.|+++|+.|+++|++++++++||++++++++|.|+.+|+ +|++|+|+|+++|+++. +
T Consensus 387 ~KGA~vLrMLr~~lGde~F~~gLr~Yl~~~~~~~at~~Df~~ale~asg~DL~~f~-~W~~q~G~P~l~v~~~~d~~~~~ 465 (875)
T PRK14015 387 EKGAEVIRMLHTLLGEEGFRKGMDLYFERHDGQAVTCEDFVAAMEDASGRDLSQFR-RWYSQAGTPRVTVSDEYDAAAGT 465 (875)
T ss_pred hHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhCCCHHHHH-HHHcCCCCCeEEEEEEEcCCCCE
Confidence 99999999999999999999999999999999999999999999999999999986 89999999999999864 3
Q ss_pred -EEEEEEEEeecCCCCCCCeEEEEEEEEE--Ccccc----------eeeEEeeccceEEEecccccccccCCCCCCceEE
Q 007232 468 -KLELEQSQFLSSGSPGDGQWIVPITLCC--GSYDV----------CKNFLLYNKSDSFDIKELLGCSISKEGDNGGWIK 534 (612)
Q Consensus 468 -~~~i~Q~~f~~~~~~~~~~w~iPl~~~~--~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 534 (612)
+++++|.+....+......|.|||.+.. .++.. ...+.++++++++.++.+. .+ --+-
T Consensus 466 ~~ltl~Q~~~~~~~~~~~~~~~iPl~i~l~~~~G~~~~~~~~~~~~~~~l~l~~~~q~f~f~~~~------~~---p~~s 536 (875)
T PRK14015 466 YTLTLSQSTPPTPGQPEKQPLHIPVAIGLLDPDGKELPLQLEGEPVERVLELTEAEQTFTFENVA------ER---PVPS 536 (875)
T ss_pred EEEEEEEeCCCCCCCCCCceEEEEEEEEEEcCCCceeeccccCCccceEEEEcCCeeEEEEcCCC------CC---ceEE
Confidence 3566665432223334458999999954 22222 2236677788888887532 12 2467
Q ss_pred eccCceEEEEEEcCHH
Q 007232 535 LNVNQTGFYRVKYDKD 550 (612)
Q Consensus 535 ~N~~~~gyyrV~Yd~~ 550 (612)
++.+.+.+-++.|+..
T Consensus 537 ~~r~fsapv~~~~~~~ 552 (875)
T PRK14015 537 LLRGFSAPVKLEYDYS 552 (875)
T ss_pred ecCCCCCcEEEeCCCC
Confidence 8888888888888743
No 6
>TIGR02411 leuko_A4_hydro leukotriene A-4 hydrolase/aminopeptidase. Members of this family represent a distinctive subset within the zinc metallopeptidase family M1 (pfam01433). The majority of the members of pfam01433 are aminopeptidases, but the sequences in this family for which the function is known are leukotriene A-4 hydrolase. A dual epoxide hydrolase and aminopeptidase activity at the same active site is indicated. The physiological substrate for aminopeptidase activity is not known.
Probab=100.00 E-value=6e-78 Score=656.25 Aligned_cols=428 Identities=24% Similarity=0.395 Sum_probs=347.9
Q ss_pred CCCCCCceeeeEEEEEEecCCCCeEEEEEEEEEEEECC-cCEEEEEecCeeeeEEEeeeeccCCCccccceeEEE----e
Q 007232 8 PRLPKFAVPKRYDIRLTPDLTSCKFGGSVAIDVDVVGD-TKFIVLNAADLTINNRSVSFTNKVSSKALEPTKVEL----V 82 (612)
Q Consensus 8 ~rLp~~~~p~~Y~l~l~~d~~~~~f~G~v~I~~~~~~~-~~~i~L~~~~l~i~~v~i~~~~~~~~~~~~~~~~~~----~ 82 (612)
+.=|..++|.||+|+|++|+++.+|+|+|+|++++..+ ++.|+||+.+|+|++|.+++. ...+.. +
T Consensus 5 ~sn~~~~~~~hy~L~L~vd~~~~~~~G~v~i~l~~~~~~~~~i~Ld~~~L~I~~V~v~g~---------~~~~~~~~~~~ 75 (601)
T TIGR02411 5 LSNYKDFRTSHTDLNLSVDFTKRKLSGSVTFTLQSLTDNLNSLVLDTSYLDIQKVTINGL---------PADFAIGERKE 75 (601)
T ss_pred ccCCCCcEEEEEEEEEEEeecCCEEEEEEEEEEEECCCCCcEEEEECCCCEEEEEEECCc---------ccceEeccccC
Confidence 34477899999999999999999999999999999765 588999999999999988652 112222 2
Q ss_pred cCceEEEEEeCCccCCc-eEEEEEEEEeeecCCCCceEEeee-ccCCeeeeeeeeccCcCCCCceeeecCCCCCeeEEEE
Q 007232 83 EADEILVLEFAETLPTG-MGVLAIGFEGVLNDKMKGFYRSSY-ELNGEKKNMAVTQFEPADARRCFPCWDEPACKATFKI 160 (612)
Q Consensus 83 ~~~~~l~i~l~~~l~~g-~~~l~i~y~g~~~~~~~G~~~~~~-~~~g~~~~~~~t~~~p~~ar~~fPc~Dep~~ka~f~l 160 (612)
..++.|.|.+++++.+| .++|+|.|++..+ ..|++...+ ..+|..+++++|||||.+||+||||||+|.+||+|++
T Consensus 76 ~~g~~L~I~l~~~l~~g~~~~l~I~Y~~~~~--~~gl~~~~~~~t~g~~~py~~Tq~qp~~AR~~fPC~D~P~~Katf~~ 153 (601)
T TIGR02411 76 PLGSPLTISLPIATSKNKELVLNISFSTTPK--CTALQWLTPEQTSGKKHPYLFSQCQAIHARSVIPCQDTPSVKSTYTA 153 (601)
T ss_pred CCCCeEEEEeCCccCCCceEEEEEEEeecCC--CceeEEecccccCCCCCCEEEECCcccchheeeeecCCcccceEEEE
Confidence 34678999999999998 8999999999753 347754433 2346677888999999999999999999999999999
Q ss_pred EEEeCCCCeEeecCcccceeecCCeEEEEEecCCCcceeEEEEEEeeeeeeecccCCCeEEEEEEeCCchhhHHHHHH-H
Q 007232 161 TLDVPSELVALSNMPVIDEKVDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGKFALN-V 239 (612)
Q Consensus 161 ~i~~p~~~~~isn~~~~~~~~~~~~~~~~f~~t~~~s~yl~a~~vg~f~~~~~~~~~~~~v~v~~~~~~~~~~~~~l~-~ 239 (612)
+|++| +.|++||....+. .++..+++|..++|||+|++||+||+|+..+ .|.++++|++|+..+.+++.+. .
T Consensus 154 ~I~~P--~~av~sg~~~~~~-~~~~~~~~F~~t~pmptYLia~avG~~~~~~----~g~~~~v~~~p~~~~~~~~~~~~~ 226 (601)
T TIGR02411 154 EVESP--LPVLMSGIPDGET-SNDPGKYLFKQKVPIPAYLIALASGDLASAP----IGPRSSVYSEPEQLEKCQYEFEHD 226 (601)
T ss_pred EEeeC--cceeccCCccccc-cCCCceEEEEeCCCcchhhheeeeccceecc----cCCceEEEccchhHHHHHHHHHHh
Confidence 99999 8888776554433 2345678999999999999999999998654 3678999999998888888888 8
Q ss_pred HHHHHHHHHHHhCCCcCCCCccEEEe-cCCCccchhcccceeeecccccccCCCChHHHHHHHHHHHHHHHHHHHhcCcc
Q 007232 240 AVKTLELYKEYFAVPYSLPKLDMIAI-PDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLV 318 (612)
Q Consensus 240 ~~~~l~~~e~~fg~~yP~~k~d~V~~-p~~~~~ame~~gli~~~~~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGnlV 318 (612)
+.++++++|+++| |||++|+|+|++ |+|+.|||||||+ +|.+..++.+.. ....+||||+|||||||+|
T Consensus 227 ~~~~l~~~e~~~~-pYp~~k~d~vvlpp~f~~GgMEN~~l-tf~~~~ll~~d~--------s~~~viaHElAHqWfGNlV 296 (601)
T TIGR02411 227 TENFIKTAEDLIF-PYEWGQYDLLVLPPSFPYGGMENPNL-TFATPTLIAGDR--------SNVDVIAHELAHSWSGNLV 296 (601)
T ss_pred HHHHHHHHHHhCC-CCcCccceEEEecCcccccccccccc-eeeccccccCCh--------hhhhhHHHHHHhhccCcee
Confidence 9999999999877 999999999987 7899999999995 677666765432 1357999999999999999
Q ss_pred CccccchhHHhhhHHHHHHHHHhhhcCCchhhH-HHHHH--HHHhhhcccccCCCCCceeecCCc--cccccccceeeee
Q 007232 319 TMEWWTHLWLNEGFATWVSYLAADSLFPEWKIW-TQFLD--ECTEGLRLDGLAESHPIEVEVNHT--GEIDEIFDAISYR 393 (612)
Q Consensus 319 t~~~w~d~WL~EGfA~y~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~d~~~~~~pl~~~~~~~--~~~~~~f~~i~Y~ 393 (612)
|++||+|+|||||||+|++.+++++.+|+.... ..+.. .....+ +.+...+|+...+.+. .+++..|+.+.|.
T Consensus 297 T~~~W~d~WLnEGfaty~e~~~~~~~~~e~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~dp~~~f~~i~Y~ 374 (601)
T TIGR02411 297 TNCSWEHFWLNEGWTVYLERRIVGRLYGEKTRHFSALIGWGELQESV--KTLGEDPEYTKLVVDLKDNDPDDAFSSVPYE 374 (601)
T ss_pred ecCCchHHHHHhhHHHHHHHHHHHHhcCcHHHHHHHHHhHHHHHHHH--HhhcCCCCCCcccccCCCCChhhhccccchh
Confidence 999999999999999999999999999886421 11111 111112 1122333443332222 2567789999999
Q ss_pred chhHHHHHHHHhhC-HHHHHHHHHHHHHHhccCCCCHHHHHHHHHhcc-----CCCHHHH-HHHHhcCCCceEEEEEEe
Q 007232 394 KGASVIRMLQNYLG-AECFQRSLASYIKKYACSNAKTEDLWAALEEGS-----GEPVNKL-MNSWTKQKGYPVISVKVK 465 (612)
Q Consensus 394 Kg~~vl~mL~~~lG-~~~F~~~l~~yl~~~~~~~~~~~df~~~l~~~~-----~~~l~~~-~~~W~~~~g~P~l~v~~~ 465 (612)
||+++|+||+..+| ++.|+++||.|+++|++++++++||++++.++. +.+++.+ |+.|++++|+|.+.+..+
T Consensus 375 KGa~~L~mL~~~lG~~~~F~~~lr~Yl~~~~~~s~~t~df~~~l~~~~~~~~~~~~l~~~~~~~Wl~~~G~P~~~~~~~ 453 (601)
T TIGR02411 375 KGFNFLFYLEQLLGGPAVFDPFLKHYFKKFAYKSLDTYQFKDALYEYFKDTGKVDKLNAVDWDTWLYSPGLPPVKPNFD 453 (601)
T ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhccccchhhhhhHHHHhcCCCCCCcCCCCC
Confidence 99999999999999 999999999999999999999999999998763 2456666 899999999999877644
No 7
>PF01433 Peptidase_M1: Peptidase family M1 This is family M1 in the peptidase classification.; InterPro: IPR014782 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M1 (clan MA(E)), the type example being aminopeptidase N from Homo sapiens (Human). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Membrane alanine aminopeptidase (3.4.11.2 from EC) is part of the HEXXH+E group; it consists entirely of aminopeptidases, spread across a wide variety of species []. Functional studies show that CD13/APN catalyzes the removal of single amino acids from the amino terminus of small peptides and probably plays a role in their final digestion; one family member (leukotriene-A4 hydrolase) is known to hydrolyse the epoxide leukotriene-A4 to form an inflammatory mediator []. This hydrolase has been shown to have aminopeptidase activity [], and the zinc ligands of the M1 family were identified by site-directed mutagenesis on this enzyme [] CD13 participates in trimming peptides bound to MHC class II molecules [] and cleaves MIP-1 chemokine, which alters target cell specificity from basophils to eosinophils []. CD13 acts as a receptor for specific strains of RNA viruses (coronaviruses) which cause a relatively large percentage of upper respiratory trace infections. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding; PDB: 2XQ0_A 2XPY_A 2XPZ_A 3SE6_B 3EBH_A 3EBG_A 3T8V_A 3Q44_A 3Q43_A 3EBI_A ....
Probab=100.00 E-value=3e-76 Score=624.83 Aligned_cols=385 Identities=46% Similarity=0.824 Sum_probs=341.4
Q ss_pred CCCCCceeeeEEEEEEecCCCCeEEEEEEEEEEEECCcCEEEEEecCeeeeEEEeeeeccCCCccccceeEEEecCceEE
Q 007232 9 RLPKFAVPKRYDIRLTPDLTSCKFGGSVAIDVDVVGDTKFIVLNAADLTINNRSVSFTNKVSSKALEPTKVELVEADEIL 88 (612)
Q Consensus 9 rLp~~~~p~~Y~l~l~~d~~~~~f~G~v~I~~~~~~~~~~i~L~~~~l~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~l 88 (612)
|||++++|.||+|.|++|++..+|+|+++|++++..+++.|+||+.+++|.++.+++..... ......+.++.+++.+
T Consensus 1 RLp~~v~p~~Y~L~L~~~~~~~~f~G~v~I~~~~~~~~~~I~L~~~~l~I~~v~~~~~~~~~--~~~~~~~~~~~~~~~l 78 (390)
T PF01433_consen 1 RLPDDVDPLHYDLDLTPDFEKRTFSGTVTITFEVTEPTNSIVLHAKDLSISSVSLNGNDSSS--EYKSSPFEYDDENEKL 78 (390)
T ss_dssp S--TTEEEEEEEEEEEEETTTTEEEEEEEEEEEESSTECEEEEEESSEEEEEEEETTEECSC--TECCEEEEEECCBTEE
T ss_pred CCCCCeEEEEEEEEEEEeCCCCEEEEEEEEEEEEecCCCEEEEEeeccEEEEEeecCccccc--cccccceeecccccee
Confidence 89999999999999999999999999999999999999999999999999999997643211 1122337788888899
Q ss_pred EEEeCCccCCc-eEEEEEEEEeeecCCCCceEEeeecc--CCeeeeeeeeccCcCCCCceeeecCCCCCeeEEEEEEEeC
Q 007232 89 VLEFAETLPTG-MGVLAIGFEGVLNDKMKGFYRSSYEL--NGEKKNMAVTQFEPADARRCFPCWDEPACKATFKITLDVP 165 (612)
Q Consensus 89 ~i~l~~~l~~g-~~~l~i~y~g~~~~~~~G~~~~~~~~--~g~~~~~~~t~~~p~~ar~~fPc~Dep~~ka~f~l~i~~p 165 (612)
.|.+++++.+| .++|+|.|+|.++++..|+|+..|.+ ++...++++||++|.+||+||||||+|.+||+|+++|++|
T Consensus 79 ~I~l~~~l~~g~~~~L~I~y~g~~~~~~~G~~~~~y~~~~~~~~~~~~~t~~~p~~ar~~fPc~D~p~~ka~f~~~i~~p 158 (390)
T PF01433_consen 79 TITLPKPLPPGSNYTLRIEYSGKISDDSSGLYRSSYTDQTNGNTRWYIYTQFEPNGARRWFPCFDEPSFKATFDLTITHP 158 (390)
T ss_dssp EEEEEEECSTTEEEEEEEEEEEECBSSSSEEEEEEEE-GTSSSETCEEEEE-TTTTGGGTSSB--STTSEEEEEEEEEEE
T ss_pred ehhhhhhcccCcEEEEEEEEeecccccccccccceeecccccccCCceeecccccccceeeeeeccCCccceEEEeeecc
Confidence 99999999999 69999999999999899999999976 6778899999999999999999999999999999999999
Q ss_pred CCCeEeecCcccceee-cCCeEEEEEecCCCcceeEEEEEEeeeeeeecccCCCeEEEEEEeCCchhhHHHHHHHHHHHH
Q 007232 166 SELVALSNMPVIDEKV-DGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGKFALNVAVKTL 244 (612)
Q Consensus 166 ~~~~~isn~~~~~~~~-~~~~~~~~f~~t~~~s~yl~a~~vg~f~~~~~~~~~~~~v~v~~~~~~~~~~~~~l~~~~~~l 244 (612)
++++|+|||++.+... .+++++++|..++|||+|++||++|+|..++..+.+|+++++|++|+..+..+++++.+.+++
T Consensus 159 ~~~~~~sng~~~~~~~~~~~~~~~~f~~t~p~~~yl~a~~vg~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l 238 (390)
T PF01433_consen 159 KDYTALSNGPLEEEESNDDGWKTTTFETTPPMPTYLFAFAVGDFESVEVTTKSGVPVRVYARPGDEEQLQFALDIAPKAL 238 (390)
T ss_dssp TTTEEEESSEEEEEEEETTTEEEEEEEEEEEEEGGG--EEEESEEEEEEETTTEEEEEEEEECTCGGGHHHHHHHHHHHH
T ss_pred ccceeeccccccccccccccceeEeeecccccCchhhhhhcCcccccccccccccchheeehhhhHHHHHHHHHhhHHHH
Confidence 9999999999988754 457999999999999999999999999998866666799999999999999999999999999
Q ss_pred HHHHHHhCCCcCCCCccEEEecCCCccchhcccceeeecccccccCCCChHHHHHHHHHHHHHHHHHHHhcCccCccccc
Q 007232 245 ELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVTMEWWT 324 (612)
Q Consensus 245 ~~~e~~fg~~yP~~k~d~V~~p~~~~~ame~~gli~~~~~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGnlVt~~~w~ 324 (612)
++|+++||++||++|+|+|++|++..|||||||+|++++..++++++.++...+..+..+||||+|||||||+||++||+
T Consensus 239 ~~~~~~~g~~yp~~k~~~v~~p~~~~~~me~~g~i~~~~~~l~~~~~~~~~~~~~~~~~~iahElahqWfGn~vt~~~w~ 318 (390)
T PF01433_consen 239 EYYEEYFGIPYPFKKLDIVAVPDFPFGGMENWGLITYRESYLLYDPDISTIGDKQEIASLIAHELAHQWFGNLVTPKWWS 318 (390)
T ss_dssp HHHHHHHTS--SSSEEEEEEEST-SSSEE--TTEEEEEGGGTS-STTTS-HHHHHHHHHHHHHHHHTTTBTTTEEESSGG
T ss_pred HHHHhhccccceecceeEEEEeccccccccccccccccccccccCcccccchhhhhhHHHHHHHHHHHHhccCCccccch
Confidence 99999999999999999999999999999999999999999999998888888888999999999999999999999999
Q ss_pred hhHHhhhHHHHHHHHHhhhcCCchhhHHHHHHHHH-hhhcccccCCCCCceeecCCccccccccceeeeech
Q 007232 325 HLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECT-EGLRLDGLAESHPIEVEVNHTGEIDEIFDAISYRKG 395 (612)
Q Consensus 325 d~WL~EGfA~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~pl~~~~~~~~~~~~~f~~i~Y~Kg 395 (612)
|+||+||||+|++++++++.+|++.++..+..+.. .++..|....++|+...+.++.++...|+.+.|.||
T Consensus 319 d~WL~Eg~a~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~~~~~~~~~~~~~f~~~~Y~KG 390 (390)
T PF01433_consen 319 DLWLNEGFATYLEYLILEKLFGEWQMMELFLVQEMQRALREDALPNSHPLSSEVEDPSDIDDMFDDISYNKG 390 (390)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHHHHHHHHHHHHTSTTCCCSSSSSSSESCGGGGSSHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhHhhccCcccchhhhhhhhHHHHHHHhhcCCCcceEeCCCCCCChHHhcCccccCCC
Confidence 99999999999999999999998888888877666 678999999999999888888999999999999998
No 8
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-55 Score=444.80 Aligned_cols=429 Identities=26% Similarity=0.393 Sum_probs=337.1
Q ss_pred CCCceeeeEEEEEEecCCCCeEEEEEEEEEEEECCcCEEEEEecCeeeeEEEeeeeccCCCcccccee-EEEecCceEEE
Q 007232 11 PKFAVPKRYDIRLTPDLTSCKFGGSVAIDVDVVGDTKFIVLNAADLTINNRSVSFTNKVSSKALEPTK-VELVEADEILV 89 (612)
Q Consensus 11 p~~~~p~~Y~l~l~~d~~~~~f~G~v~I~~~~~~~~~~i~L~~~~l~i~~v~i~~~~~~~~~~~~~~~-~~~~~~~~~l~ 89 (612)
+..+...|++|++++|++...++|+|.+++++..+...|.|+.++|.|.+|.+++... ...+.. -.+....+.+.
T Consensus 13 ~~~~~~~H~~l~~~vdF~~~~i~G~a~l~l~~~~~~~~~~LDt~~l~i~~v~i~~~~~----~~~i~~~~~~~g~~~~~~ 88 (613)
T KOG1047|consen 13 YRDVTVLHLALNLRVDFEKRGISGSALLTLRLLEDNLKLVLDTRDLSIRNVTINGEEP----PFRIGFRQPFLGSGQKLV 88 (613)
T ss_pred hhhhhhheeeeeEEEecccceecceEEEEEEeccCCceeEeeecceeeEEeeccCCCC----CCccCcccCCCCCceEEE
Confidence 4567789999999999999999999999999887766799999999999999986421 111111 12223334455
Q ss_pred EEeCCccCCc-eEEEEEEEEeeecCCCCceEEeee-ccCCeeeeeeeeccCcCCCCceeeecCCCCCeeEEEEEEEeCCC
Q 007232 90 LEFAETLPTG-MGVLAIGFEGVLNDKMKGFYRSSY-ELNGEKKNMAVTQFEPADARRCFPCWDEPACKATFKITLDVPSE 167 (612)
Q Consensus 90 i~l~~~l~~g-~~~l~i~y~g~~~~~~~G~~~~~~-~~~g~~~~~~~t~~~p~~ar~~fPc~Dep~~ka~f~l~i~~p~~ 167 (612)
+..+.+ ++| +..|.|.|+..- +..++-.-.. ...|++..|+.+|||...||.+|||+|.|+.|.||+..|.+|.+
T Consensus 89 l~~~~~-~a~~~~~l~i~y~Ts~--~atalqwL~peQT~gk~~PylfsQCQAIhaRsi~PC~DTPavK~ty~a~v~vp~~ 165 (613)
T KOG1047|consen 89 LPAPSS-KAGERLQLLIWYETSP--SATALQWLNPEQTSGKKHPYLFSQCQAIHARSIFPCQDTPAVKSTYTAEVEVPMG 165 (613)
T ss_pred eccccc-cccCceEEEEEEeccC--CcceeEEeccccccCCCCCchHHHHHHhHHheeccccCCCcceeEEEEEEEcCCc
Confidence 555443 355 899999999753 2345533222 23477789999999999999999999999999999999999999
Q ss_pred CeEeecCccccee-ecCCeEEEEEecCCCcceeEEEEEEeeeeeeecccCCCeEEEEEEeCCchhhHHHHHH-HHHHHHH
Q 007232 168 LVALSNMPVIDEK-VDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGKFALN-VAVKTLE 245 (612)
Q Consensus 168 ~~~isn~~~~~~~-~~~~~~~~~f~~t~~~s~yl~a~~vg~f~~~~~~~~~~~~v~v~~~~~~~~~~~~~l~-~~~~~l~ 245 (612)
+.+++++-...+. ...++..++|....|+|+|++||++|+....+ -|.+-+||+.|...+.+++-+. .+.++|+
T Consensus 166 l~a~mSai~~~~~~~~~~~~~f~f~q~~pIP~YLiai~~G~L~s~e----IgpRs~VwaEp~~~~a~~~ef~~~~e~~L~ 241 (613)
T KOG1047|consen 166 LTALMSAIPAGEKPGSNGRAIFRFKQEVPIPSYLIAIAVGDLESRE----IGPRSRVWAEPCLLDACQEEFAGETEDFLK 241 (613)
T ss_pred ceeeeeccccccCCCCCCcceEEEEeccCchhhhHHHhhccccccc----cCCccceecchhhhHHHHHHHHhhhHHHHH
Confidence 9999888664443 33457889999999999999999999987655 3677899999999888877666 8999999
Q ss_pred HHHHHhCCCcCCCCccEEEe-cCCCccchhcccceeeecccccccCCCChHHHHHHHHHHHHHHHHHHHhcCccCccccc
Q 007232 246 LYKEYFAVPYSLPKLDMIAI-PDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVTMEWWT 324 (612)
Q Consensus 246 ~~e~~fg~~yP~~k~d~V~~-p~~~~~ame~~gli~~~~~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGnlVt~~~w~ 324 (612)
.-|+.+| ||++.+||++++ |.|+.|||||+-|.+.... ||-.+. ....+|||||||.||||+||...|.
T Consensus 242 ~Ae~l~G-pY~WgryDllvlPpSFP~gGMENPcltF~TpT-llaGDr--------sl~~vIaHEIAHSWtGNlVTN~sWe 311 (613)
T KOG1047|consen 242 AAEKLFG-PYVWGRYDLLVLPPSFPFGGMENPCLTFVTPT-LLAGDR--------SLVDVIAHEIAHSWTGNLVTNASWE 311 (613)
T ss_pred HHHHHcC-CcccccceEEEecCCCCcccccCcceeeecch-hhcCCc--------chhhHHHHHhhhhhcccccccCccc
Confidence 9999999 999999999998 5899999999988887776 555443 2578999999999999999999999
Q ss_pred hhHHhhhHHHHHHHHHhhhcCCchhhHHHHHHHHH-hhh--cccccCCCCCceeecCC--ccccccccceeeeechhHHH
Q 007232 325 HLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECT-EGL--RLDGLAESHPIEVEVNH--TGEIDEIFDAISYRKGASVI 399 (612)
Q Consensus 325 d~WL~EGfA~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~d~~~~~~pl~~~~~~--~~~~~~~f~~i~Y~Kg~~vl 399 (612)
+.||||||++|++..++..++|+... +|..-.. ..+ ..|.....++....+.+ .-+.+..|+.+.|.||..+|
T Consensus 312 hfWLNEGfTvylErrI~g~~~g~~~~--~f~a~~gw~~L~~~~d~~g~~~~~tkLv~kl~~~dPDdafs~VpYeKG~~ll 389 (613)
T KOG1047|consen 312 HFWLNEGFTVYLERRIVGRLYGEAYR--QFEALIGWRELRPSMDLFGETSEFTKLVVKLENVDPDDAFSQVPYEKGFALL 389 (613)
T ss_pred hhhhcccchhhhhhhhhhhhcchhHH--HHHHhcChhhhhhHHHhcCCCcccchhhhhccCCChHHhhhcCchhhhhHHH
Confidence 99999999999999999999887432 2211111 111 12444444444322211 13456789999999999999
Q ss_pred HHHHHhhC-HHHHHHHHHHHHHHhccCCCCHHHHHHHHHhccC----CCH--HHHHHHHhcCCCceEEEE
Q 007232 400 RMLQNYLG-AECFQRSLASYIKKYACSNAKTEDLWAALEEGSG----EPV--NKLMNSWTKQKGYPVISV 462 (612)
Q Consensus 400 ~mL~~~lG-~~~F~~~l~~yl~~~~~~~~~~~df~~~l~~~~~----~~l--~~~~~~W~~~~g~P~l~v 462 (612)
+.|++.+| ++.|...||.|+++|+++.+.++||.+.+-+... +++ +--++.|++.+|+|-..-
T Consensus 390 ~~Le~~lG~~~~Fd~FLr~Yv~kfa~ksI~t~dfld~Lye~fpe~kk~dil~~vd~~~Wl~~~G~Pp~~p 459 (613)
T KOG1047|consen 390 FYLEQLLGDPTRFDPFLRAYVHKFAFKSILTQDFLDFLYEYFPELKKKDILDEVDWDLWLNSPGMPPPKP 459 (613)
T ss_pred HHHHHHhCChhhHHHHHHHHHHHhccceecHHHHHHHHHHhCcchhhhhhhccccHHHHhcCCCCCCCCC
Confidence 99999998 6789999999999999999999999999876532 222 234799999999997543
No 9
>KOG1932 consensus TATA binding protein associated factor [Transcription]
Probab=100.00 E-value=2.2e-38 Score=341.56 Aligned_cols=428 Identities=20% Similarity=0.273 Sum_probs=314.5
Q ss_pred eeeEEEEEE-ecCCCCeEEEEEEEEEEE-ECCcCEEEEEecCeeeeEEEeeeeccCC---------------Ccccc---
Q 007232 16 PKRYDIRLT-PDLTSCKFGGSVAIDVDV-VGDTKFIVLNAADLTINNRSVSFTNKVS---------------SKALE--- 75 (612)
Q Consensus 16 p~~Y~l~l~-~d~~~~~f~G~v~I~~~~-~~~~~~i~L~~~~l~i~~v~i~~~~~~~---------------~~~~~--- 75 (612)
-.|..+.|. +|+....+.|.++|++.. ..+...|.||++++.|.+|.|++..... +....
T Consensus 27 ~~hQkv~l~~Idf~~rsi~G~tEitI~P~~~nL~~i~l~~kql~I~sV~V~~~~~~f~y~d~~q~~~~~~~~~~~l~~~s 106 (1180)
T KOG1932|consen 27 VLHQKVSLSNIDFSKRSIIGFTEITIQPLVPNLSVIVLHSKQLRILSVLVNGSPTKFIYNDPTQNDCTDEIWQRVLDPAS 106 (1180)
T ss_pred ceEEEEEeecccceeeEEEeEEEEEEecCCCCcceEEEeccccEEEEEEecCcccceeecchhhhhhhhhhhhhhhhhhh
Confidence 589999998 999999999999999997 4558999999999999999998752110 00000
Q ss_pred ------ceeEEEecCceEEEEEeCCccCC-c----eEEEEEEEEeeecCCCCceEEeeeccCCeeeeeeeeccC-cCCCC
Q 007232 76 ------PTKVELVEADEILVLEFAETLPT-G----MGVLAIGFEGVLNDKMKGFYRSSYELNGEKKNMAVTQFE-PADAR 143 (612)
Q Consensus 76 ------~~~~~~~~~~~~l~i~l~~~l~~-g----~~~l~i~y~g~~~~~~~G~~~~~~~~~g~~~~~~~t~~~-p~~ar 143 (612)
..-...+..++.|.|.++++++. | ...++|.|+..-+..+--|++..+........+.++..+ +.+||
T Consensus 107 ~~~~~~~~y~~l~~~~g~L~I~ipk~~~~~~ee~~~lr~~I~~s~~~pk~gi~Fv~~~~~~~~~~~hvft~~~~~~s~ar 186 (1180)
T KOG1932|consen 107 QSHFLAVQYEDLDEDNGELLIKIPKESKKVGEELKALRLRIDFSVREPKDGIKFVRPNYIVSPRDKHVFTNNTQISSSAR 186 (1180)
T ss_pred hhhhHHHhhhccccCCCeEEEEcCchhhhhhhhccceEEEEEEEccCCCCCeEEeccCcccCcccCceEeecCccccccc
Confidence 00112234568899999988532 3 456778898765555555666655222222223334444 55799
Q ss_pred ceeeecCCCCCeeEEEEEEEeCCCCeEeecCcccceee--cCCeEEEEEecCCCcceeEEEEEEeeeeeeecccCCCeEE
Q 007232 144 RCFPCWDEPACKATFKITLDVPSELVALSNMPVIDEKV--DGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKV 221 (612)
Q Consensus 144 ~~fPc~Dep~~ka~f~l~i~~p~~~~~isn~~~~~~~~--~~~~~~~~f~~t~~~s~yl~a~~vg~f~~~~~~~~~~~~v 221 (612)
.||||.|.+..+|+|++++++|+..+++++|.+..... +-..++++|.-+.|+++..+|||||+|+... ...++++
T Consensus 187 ~WfPCvD~~~e~~tWeLeftvp~~~~av~~geLl~~v~~~D~~Kkt~~ys~tvPvA~~~I~~AiG~F~~~~--~P~~~~i 264 (1180)
T KOG1932|consen 187 SWFPCVDSSYERCTWELEFTVPKNLVAVSCGELLEQVETPDLRKKTYHYSLTVPVAPSNIGFAIGPFKSYV--EPSMIDI 264 (1180)
T ss_pred eEEeecCCccccceEEEEEEecccceeccchhhhheeecccccccEEEEEEeccCCccccceeeccccccC--CCccCcc
Confidence 99999999999999999999999999999999887633 2347899999999999999999999999873 2447899
Q ss_pred EEEEeCCchhhHHHHHHHHHHHHHHHHHHhCCCcCCCCccEEEecCCCccchhcccceeeecccccccCCCChHHHHHHH
Q 007232 222 RVYCQVGKANQGKFALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRV 301 (612)
Q Consensus 222 ~v~~~~~~~~~~~~~l~~~~~~l~~~e~~fg~~yP~~k~d~V~~p~~~~~ame~~gli~~~~~~ll~~~~~~~~~~~~~~ 301 (612)
..||.|+.........-...++++|||+.+|..|||+.+.+|++|.-...-|....|.+++.+ +||..+..+ .....
T Consensus 265 ~~f~LP~~~~~v~nt~~~l~k~iefye~~ls~rYPF~~~k~VFvd~~~~~i~~~asl~I~st~-lLy~~~iID--q~~~t 341 (1180)
T KOG1932|consen 265 THFCLPGLEPLVKNTTVYLHKAIEFYEEELSSRYPFSCYKTVFVDEAAVEISSYASLSIFSTS-LLYSKNIID--QTFLT 341 (1180)
T ss_pred eeEecCcchHHhhhHHHHHHHHHHHHHHHhccCCCcceeeEEEecCCcceeeecceeeeeecc-ccchHhhhh--HHHHH
Confidence 999999999999988889999999999999988999999999999887777788888888887 888877543 33446
Q ss_pred HHHHHHHHHHHHhcCccCccccchhHHhhhHHHHHHHHHhhhcCCchhhHHHHHHHHHhhhccccc----CCCCCceeec
Q 007232 302 ATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECTEGLRLDGL----AESHPIEVEV 377 (612)
Q Consensus 302 ~~~iaHElaHqWfGnlVt~~~w~d~WL~EGfA~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~----~~~~pl~~~~ 377 (612)
...+|-.||.||||-++++..|+|.||.+|+|.|+..+++++.+|++++.-+.-.+.-.-+.+|-. ..+.|+....
T Consensus 342 r~~La~aLA~Q~fg~yIsp~~wsD~Wl~~GiagYl~~l~~kk~lGNNEyry~lKk~~d~V~~~d~~~g~i~l~~Pi~~s~ 421 (1180)
T KOG1932|consen 342 RRKLAWALASQWFGVYISPVDWSDFWLLKGIAGYLTGLFVKKFLGNNEYRYQLKKALDAVVDYDVQKGAIYLTRPISPSM 421 (1180)
T ss_pred HHHHHHHHHHhhhEEEeeccchhhhHHHHhHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHhhhccCceeeccCCCcch
Confidence 788999999999999999999999999999999999999999999877643332222222333321 1122332211
Q ss_pred C--------------CccccccccceeeeechhHHHHHHHHhhCHHHHHHHHHHHHHHhccCCCCHHHHHHHHHhccCCC
Q 007232 378 N--------------HTGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEP 443 (612)
Q Consensus 378 ~--------------~~~~~~~~f~~i~Y~Kg~~vl~mL~~~lG~~~F~~~l~~yl~~~~~~~~~~~df~~~l~~~~~~~ 443 (612)
. .....+..|..-.-.|+..+.+|+++.+|.+-|.+..+..+. .++...
T Consensus 422 k~~~~~~~~lh~~~r~~~~~s~~~~~a~~~k~~~~~~m~~~~i~~e~~~q~f~kv~~-----------------~~~~~~ 484 (1180)
T KOG1932|consen 422 KFKLKGPFHLHISIRHLHTLSGSYGMAFVIKKLLLQRMSGNRINEELSFQVFNKVLE-----------------LASKML 484 (1180)
T ss_pred hhcccCcceeeecccceeecChhHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHH-----------------hhhhhH
Confidence 1 000111111111124777788888888888777665555432 232223
Q ss_pred HHHHHHHHhcCCCceEEEEEEe
Q 007232 444 VNKLMNSWTKQKGYPVISVKVK 465 (612)
Q Consensus 444 l~~~~~~W~~~~g~P~l~v~~~ 465 (612)
++.|++.|++..|+|.+.+...
T Consensus 485 ~k~~~~~Wv~~~g~~~~r~~~~ 506 (1180)
T KOG1932|consen 485 LKSFFQTWVYGLGVPILRLGQR 506 (1180)
T ss_pred HHHHHHHHHhccCCeeEEEEEE
Confidence 5778888888888888877653
No 10
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=99.62 E-value=3.2e-16 Score=161.71 Aligned_cols=80 Identities=40% Similarity=0.640 Sum_probs=73.4
Q ss_pred eEEeccCceEEEEEEcCHHHHHHHHHHHHcCCCChhhHHHHHHHHHHHHHhcCCCHHHHHHHHHhc-CcCCCHhHHHHhh
Q 007232 532 WIKLNVNQTGFYRVKYDKDLAARLGYAIEMKQLSETDRFGILDDHFALCMARQQTLTSLLTLMASY-SEETEYTVLSNLI 610 (612)
Q Consensus 532 ~i~~N~~~~gyyrV~Yd~~~w~~l~~~l~~~~i~~~~r~~li~D~~~l~~~g~l~~~~~~~l~~~l-~~e~~~~~w~~~~ 610 (612)
||++|.++.|||||+||+++|+.|+++|..+.|++.+|++|++|+|+|+++|+++++.+|+++.|+ ++|++|.||..++
T Consensus 1 wi~~N~~~~GyyRV~Yd~~~~~~l~~~L~~~~l~~~~R~~ll~D~~al~~~g~~~~~~~l~l~~~~~~~E~~~~vw~~~~ 80 (324)
T PF11838_consen 1 WIKLNAGQTGYYRVNYDEENWDALIKQLQSNHLSPLDRAQLLDDLFALARAGRLSYSDFLDLLEYLLPNETDYVVWSTAL 80 (324)
T ss_dssp EEEESGGGSSSSEEEECTTHHHHHHHHHHHHGS-HHHHHHHHHHHHHHHHTTSS-HHHHHHHHGGG-GT--SHHHHHHHH
T ss_pred CEEEeCCceEEEEEeCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhccCCCchHHHHHHH
Confidence 999999999999999999999999999987679999999999999999999999999999999999 9999999999986
Q ss_pred c
Q 007232 611 T 611 (612)
Q Consensus 611 ~ 611 (612)
+
T Consensus 81 ~ 81 (324)
T PF11838_consen 81 S 81 (324)
T ss_dssp H
T ss_pred H
Confidence 4
No 11
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=99.49 E-value=4.2e-12 Score=129.84 Aligned_cols=301 Identities=16% Similarity=0.200 Sum_probs=181.7
Q ss_pred EEEEEEeCCCCeEeecCcccceeecCCeEEE---EEecCCCcceeEEEEEEeeeeeeec-ccCCCeEEEEEEeCCchhhH
Q 007232 158 FKITLDVPSELVALSNMPVIDEKVDGNMKTV---SYQESPIMSTYLVAVVIGLFDYVED-HTSDGIKVRVYCQVGKANQG 233 (612)
Q Consensus 158 f~l~i~~p~~~~~isn~~~~~~~~~~~~~~~---~f~~t~~~s~yl~a~~vg~f~~~~~-~~~~~~~v~v~~~~~~~~~~ 233 (612)
+.+++.-| .|.+.+..+.+.+.... ..-. +|..+|.+ +|.|...+- .+..+..+.++..-. ..+.
T Consensus 115 ~~~~~~~p-~wriAT~L~~~~~~~~~-F~aa~~~~lvDSPve--------~g~~~~~~~e~~g~ph~~~~~g~~p-~~d~ 183 (558)
T COG3975 115 LELTVIPP-EWRIATALPPVATGRFV-FYAASYEELVDSPVE--------AGLFELLDFEVTGAPHTIALRGELP-NFDK 183 (558)
T ss_pred eEEEecCc-cceeeecCCccccCCce-eecccHHHhcCChhh--------ccccceeeeeccCCceeEEEeeccc-cccH
Confidence 55666544 48888777644421000 1111 22334432 333333321 122334444443321 3356
Q ss_pred HHHHHHHHHHHHHHHHHhCCCcCCCCccEEEe-cCCCccchhcccceeeecccccccCCCChHHHHHHHHHHHHHHHHHH
Q 007232 234 KFALNVAVKTLELYKEYFAVPYSLPKLDMIAI-PDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQ 312 (612)
Q Consensus 234 ~~~l~~~~~~l~~~e~~fg~~yP~~k~d~V~~-p~~~~~ame~~gli~~~~~~ll~~~~~~~~~~~~~~~~~iaHElaHq 312 (612)
+...+.++++++.--+.|| +-|+.++.+++. -+...||||+-.-.........+.+ ....+....+++||..|-
T Consensus 184 ~~~~~~~k~ii~~~~~vFg-~~~~~~Y~Fl~~~s~q~~GGlEH~~St~l~~~r~~~~~----~~ky~~~l~llsHEyfH~ 258 (558)
T COG3975 184 ERLASDTKKIIEAEIKVFG-SAPFDKYVFLLHLSDQIYGGLEHRRSTALIYDRFGFTD----QDKYQDLLGLLSHEYFHA 258 (558)
T ss_pred HHHHHHHHHHHHHHHHHhc-CCCccceEEEEEecCCCCCCceeccccccccccccccc----hhHHHHHHHHHHHHHHHh
Confidence 6777888999999999999 789999988765 5566789998543333322222211 122466789999999999
Q ss_pred HhcCccCcccc-----------chhHHhhhHHHHHHHHHhhhc-CCchhhHHHHHHHHHhhhcccccCCCCCceeecC--
Q 007232 313 WFGNLVTMEWW-----------THLWLNEGFATWVSYLAADSL-FPEWKIWTQFLDECTEGLRLDGLAESHPIEVEVN-- 378 (612)
Q Consensus 313 WfGnlVt~~~w-----------~d~WL~EGfA~y~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~~~~~-- 378 (612)
|.+..+.|.-- ..+|+.|||++|+..++.-.. .-+.+-....+.+...++..-.....+|+.....
T Consensus 259 WNvKrIrpa~l~p~~~d~en~t~~lW~~EG~T~Yy~~ll~lRsgl~~~~~~l~~la~tl~~~~~~~gRl~~~laEsS~~a 338 (558)
T COG3975 259 WNVKRIRPAALEPFNLDKENYTPLLWFSEGFTSYYDRLLALRSGLISLETYLNYLAKTLARYLNTPGRLRQSLAESSFDA 338 (558)
T ss_pred ccceeccccccCCccccccCCCcceeeecCchHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCceecccccccccch
Confidence 99988887542 469999999999997755432 1111111112222222222222222233322111
Q ss_pred -----CccccccccceeeeechhHHHHHHHHhh-----CHHHHHHHHHHHHHHhcc--CCCCHHHHHHHHHhccCCCHHH
Q 007232 379 -----HTGEIDEIFDAISYRKGASVIRMLQNYL-----GAECFQRSLASYIKKYAC--SNAKTEDLWAALEEGSGEPVNK 446 (612)
Q Consensus 379 -----~~~~~~~~f~~i~Y~Kg~~vl~mL~~~l-----G~~~F~~~l~~yl~~~~~--~~~~~~df~~~l~~~~~~~l~~ 446 (612)
.++.....-....|+||++|--+|.-.| |+..+.+.|+.+++.+.. +..+++++..+++.++|.++..
T Consensus 339 wik~yr~d~ns~n~~~sYY~kG~lv~L~lDl~iR~r~~~~~SLDdvmram~~~~~~~~~~~t~e~v~av~~~~tg~dl~~ 418 (558)
T COG3975 339 WIKYYRPDENSPNRLVSYYQKGALVALLLDLLIRERGGGQKSLDDVMRALWKEFGRAERGYTPEDVQAVLENVTGLDLAT 418 (558)
T ss_pred hHHhhcccccccccchhhhhchhHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCcCccCCCHHHHHHHHHhhccccHHH
Confidence 1111111111124899999999888888 577899999999999876 6679999999999999999999
Q ss_pred HHHHHhcCCCceEEEEEEeCcEEEEEEE
Q 007232 447 LMNSWTKQKGYPVISVKVKEEKLELEQS 474 (612)
Q Consensus 447 ~~~~W~~~~g~P~l~v~~~~~~~~i~Q~ 474 (612)
||+..+++..-|.+.---....++++++
T Consensus 419 f~~~~i~~~~~~~l~~~l~~~gL~~~~~ 446 (558)
T COG3975 419 FFDEYIEGTEPPPLNPLLERFGLTFTPK 446 (558)
T ss_pred HHHHHhhcCCCCChhhhhhhcceEEEec
Confidence 9999999887666543222234555554
No 12
>PF13485 Peptidase_MA_2: Peptidase MA superfamily
Probab=99.23 E-value=1.6e-11 Score=108.03 Aligned_cols=105 Identities=30% Similarity=0.490 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHHhcCccCccccchhHHhhhHHHHHHHHHhhhcCCchhhHHHHHHHHHhhhcccccCCCCCceeecCC
Q 007232 300 RVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECTEGLRLDGLAESHPIEVEVNH 379 (612)
Q Consensus 300 ~~~~~iaHElaHqWfGnlVt~~~w~d~WL~EGfA~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~~~~~~ 379 (612)
....+++||++|+|+++.+........|++||+|+|++... .. .+......++..+......++......
T Consensus 24 ~~~~~l~HE~~H~~~~~~~~~~~~~~~W~~EG~A~y~~~~~----~~------~~~~~~~~~~~~~~~~~~~~l~~~~~~ 93 (128)
T PF13485_consen 24 WLDRVLAHELAHQWFGNYFGGDDNAPRWFNEGLAEYVEGRI----ED------EFDEDLKQAIESGSLPPLEPLNSSFDF 93 (128)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCccCchHHHHHHHHHHhcCc----cc------hhHHHHHHHHHcCCCCChHHHhccccc
Confidence 45689999999999999998777788999999999999431 01 111111222222222222222211111
Q ss_pred ccccccccceeeeechhHHHHHHHHhhCHHHHHHHHHHH
Q 007232 380 TGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASY 418 (612)
Q Consensus 380 ~~~~~~~f~~i~Y~Kg~~vl~mL~~~lG~~~F~~~l~~y 418 (612)
...+....|.+|.+++++|.+..|++.|++.|++|
T Consensus 94 ----~~~~~~~~Y~~~~~~~~~L~~~~G~~~~~~~l~~~ 128 (128)
T PF13485_consen 94 ----SWEDDSLAYYQGYLFVRFLEEKYGREKFKAFLREY 128 (128)
T ss_pred ----cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 33445568999999999999999999999999875
No 13
>PF10460 Peptidase_M30: Peptidase M30; InterPro: IPR019501 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This family contains metallopeptidases belonging to MEROPS peptidase family M30 (hyicolysin family, clan MA). Hyicolysin has a zinc ion which is liganded by two histidine and one glutamate residue.
Probab=97.86 E-value=0.00075 Score=68.65 Aligned_cols=222 Identities=20% Similarity=0.246 Sum_probs=121.7
Q ss_pred CCCeEEEEEEeCC-----chh--hHHHHHHHHH---HHHHHHHHHhCCCc-----CCCCc------cEEEe---cCC-Cc
Q 007232 216 SDGIKVRVYCQVG-----KAN--QGKFALNVAV---KTLELYKEYFAVPY-----SLPKL------DMIAI---PDF-AA 270 (612)
Q Consensus 216 ~~~~~v~v~~~~~-----~~~--~~~~~l~~~~---~~l~~~e~~fg~~y-----P~~k~------d~V~~---p~~-~~ 270 (612)
.+|..+.||..-+ ... .++...+... ++.+...+.||-|+ ...|+ ++|.+ ++- ..
T Consensus 16 ~~g~~vnvWVed~e~~~~~is~~~~~~l~~~F~~~~~iYp~~~~ifG~pwg~d~d~~~~I~~~~~v~iviln~~~~~~~~ 95 (366)
T PF10460_consen 16 YDGRTVNVWVEDGEYGSNKISDAQADSLAQEFDNSGKIYPRLVEIFGEPWGSDVDGNGKIPTGQPVDIVILNFNPDGSPY 95 (366)
T ss_pred cCCcEEEEEEEcCccCccccCHHHHHHHHHHhccccccchhHHHhcCCCCCCCCCCCCcccCCCceEEEEEecCCCCCce
Confidence 5678888888765 222 2222222222 36666677888653 23343 36655 211 11
Q ss_pred c----------------chhcccceeeecccccccCCCChHHHHHHHHHHHHHHHHHHHh--cCccCcc--ccchhHHhh
Q 007232 271 G----------------AMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWF--GNLVTME--WWTHLWLNE 330 (612)
Q Consensus 271 ~----------------ame~~gli~~~~~~ll~~~~~~~~~~~~~~~~~iaHElaHqWf--GnlVt~~--~w~d~WL~E 330 (612)
| .-.|.|.++|-....++.... .....+..++|||+-|+=- -+.|... .-.|.||||
T Consensus 96 G~~GYF~s~d~~~~~~~~~SNe~e~~YiD~~~~~~~~~---~~~~~~~sTlAHEfQHmInfy~~~v~~g~~~~~dtWLnE 172 (366)
T PF10460_consen 96 GTAGYFWSSDLYPKSSNPYSNESEYFYIDSETLYLGGN---SGPDTVYSTLAHEFQHMINFYQRGVLHGKQYAMDTWLNE 172 (366)
T ss_pred eeeeeecHHHcccccccCCCcceeEEEEecHHhhccCC---ccHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccHHHH
Confidence 1 223345555444433322211 1234578899999999753 2344433 246999999
Q ss_pred hHHHHHHHHHhhhcCCchhh-HHHHHHHHHhhhcccccCCCCCceeecCCccccccccceeeeechhHHHHHHHHhhCHH
Q 007232 331 GFATWVSYLAADSLFPEWKI-WTQFLDECTEGLRLDGLAESHPIEVEVNHTGEIDEIFDAISYRKGASVIRMLQNYLGAE 409 (612)
Q Consensus 331 GfA~y~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~pl~~~~~~~~~~~~~f~~i~Y~Kg~~vl~mL~~~lG~~ 409 (612)
|+|.-+++++..+..+.... .......... .......+.+..- ... . -....|....+++.-|....|.+
T Consensus 173 ~lS~~aEdl~s~~~~~~~n~i~d~R~~~y~~---~~~~~~~~~l~~w-~~~---g--~~l~sYs~s~~Fg~~L~rQ~G~~ 243 (366)
T PF10460_consen 173 MLSMSAEDLYSSKIDPGYNNIRDSRIPYYNN---YTSGNYNCSLTAW-SSF---G--DSLASYSSSYSFGAYLYRQYGGD 243 (366)
T ss_pred HHHHHHHHHHhcCCCcccCccccccHHHHhh---ccccCCCcceeec-CCC---c--cccccchhHHHHHHHHHHHcChH
Confidence 99999999887766432111 0010111110 0001111112111 111 1 12347999999999999999998
Q ss_pred HHHHHHHHHHHHhccCCCCHHHHHHHHHh-c-cCCCHHHHHHHHhcCC
Q 007232 410 CFQRSLASYIKKYACSNAKTEDLWAALEE-G-SGEPVNKLMNSWTKQK 455 (612)
Q Consensus 410 ~F~~~l~~yl~~~~~~~~~~~df~~~l~~-~-~~~~l~~~~~~W~~~~ 455 (612)
.+++.|.. ....+.++..++..+ + .+..+.++|.+|...-
T Consensus 244 ~~~~~l~~------~~~tds~avl~aa~~~~~~~~sf~~~l~~w~~A~ 285 (366)
T PF10460_consen 244 FYKKLLTN------SSSTDSEAVLDAAIKQAGPGNSFGELLRRWGVAL 285 (366)
T ss_pred HHHHHHhc------CCCCcHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 87776663 123566776666543 4 3678999999998655
No 14
>PF05299 Peptidase_M61: M61 glycyl aminopeptidase; InterPro: IPR007963 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M61 (glycyl aminopeptidase family, clan MA(E)).The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The type example is glycyl aminopeptidase from Sphingomonas capsulata.
Probab=97.86 E-value=8.6e-06 Score=69.42 Aligned_cols=44 Identities=23% Similarity=0.387 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHhcCccCccc-----------cchhHHhhhHHHHHHHHHhhhc
Q 007232 301 VATVVAHELAHQWFGNLVTMEW-----------WTHLWLNEGFATWVSYLAADSL 344 (612)
Q Consensus 301 ~~~~iaHElaHqWfGnlVt~~~-----------w~d~WL~EGfA~y~~~~~~~~~ 344 (612)
...+++||..|.|.+..+.|+. -+.+|+-|||++|++.+++.+.
T Consensus 4 ~l~l~sHEffH~WnvkrirP~~l~p~dy~~~~~t~~LWv~EG~T~Y~~~l~l~Ra 58 (122)
T PF05299_consen 4 FLGLLSHEFFHSWNVKRIRPAELGPFDYEKPNYTELLWVYEGFTSYYGDLLLVRA 58 (122)
T ss_pred hhhhhhhhccccccceEeccccccCCCCCCCCCCCCEeeeeCcHHHHHHHHHHHc
Confidence 5678999999999987777654 4679999999999998876543
No 15
>PF04450 BSP: Peptidase of plants and bacteria; InterPro: IPR007541 These basic secretory proteins (BSPs) are believed to be part of the plants defence mechanism against pathogens [].
Probab=97.19 E-value=0.0077 Score=56.84 Aligned_cols=171 Identities=19% Similarity=0.249 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHHHHhCCC-cCCCCccEEE--ecCCCccchh----cccceeeecccccccCCCChHHHHHHHHHHHHHH
Q 007232 236 ALNVAVKTLELYKEYFAVP-YSLPKLDMIA--IPDFAAGAME----NYGLVTYRETALLYDDQHSAAANKQRVATVVAHE 308 (612)
Q Consensus 236 ~l~~~~~~l~~~e~~fg~~-yP~~k~d~V~--~p~~~~~ame----~~gli~~~~~~ll~~~~~~~~~~~~~~~~~iaHE 308 (612)
+...+.++..+..+.|-.+ .+-+..+.|. +.+...-|-- +-.-|.++...+--.+. . ...+.++..++.||
T Consensus 26 a~~~L~~a~~~V~~~ly~~~~~~~~v~~Vt~~~~~~~gVA~t~gd~~~~~I~~S~~~i~~~~~-~-~~~~~Ei~Gvl~HE 103 (205)
T PF04450_consen 26 AEQVLRDASRFVWRLLYQSPADRKPVRSVTLILDDMDGVAYTSGDDDHKEIHFSARYIAKYPA-D-GDVRDEIIGVLYHE 103 (205)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCCcccEEEEEEECCCeeEEEecCCCccEEEEeHHHHhhccc-c-cchHHHHHHHHHHH
Confidence 3444556666666666533 1223333333 2343211111 12456666553322221 1 12345689999999
Q ss_pred HHHHHhcCccCccccchhHHhhhHHHHHHHHHhhhcCCchhhHHHHHHHHHhhhcccccCCCCCceeecCCccccccccc
Q 007232 309 LAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECTEGLRLDGLAESHPIEVEVNHTGEIDEIFD 388 (612)
Q Consensus 309 laHqWfGnlVt~~~w~d~WL~EGfA~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~~~~~~~~~~~~~f~ 388 (612)
++|-|=.+--. -.--||-||+|.|+-..+- ..+. ....|... ..++
T Consensus 104 ~~H~~Q~~~~~---~~P~~liEGIADyVRl~aG--~~~~--------------------~w~~p~~~---------~~wd 149 (205)
T PF04450_consen 104 MVHCWQWDGRG---TAPGGLIEGIADYVRLKAG--YAPP--------------------HWKRPGGG---------DSWD 149 (205)
T ss_pred HHHHhhcCCCC---CCChhheecHHHHHHHHcC--CCCc--------------------cccCCCCC---------CCcc
Confidence 99966543321 1124899999999987631 0010 01111110 1223
Q ss_pred eeeeechhHHHHHHHH-hhCHHHHHHHHHHHHHHhccCCCCHHHHHHHHHhccCCCHHHHHHH
Q 007232 389 AISYRKGASVIRMLQN-YLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKLMNS 450 (612)
Q Consensus 389 ~i~Y~Kg~~vl~mL~~-~lG~~~F~~~l~~yl~~~~~~~~~~~df~~~l~~~~~~~l~~~~~~ 450 (612)
-.|.-.|.+|.-|+. ..|+. |.+-|.+=+++..+ +.+++|+. .+|++++++++.
T Consensus 150 -~gY~~TA~FL~wle~~~~~~g-fV~~LN~~m~~~~y---~~~~~~~~---l~G~~v~~LW~e 204 (205)
T PF04450_consen 150 -DGYRTTARFLDWLEDNRYGKG-FVRRLNEAMRRDKY---SSDDFWKE---LLGKPVDELWAE 204 (205)
T ss_pred -cccHHHHHHHHHHHhcccCcc-HHHHHHHHHhhCCC---CcHhHHHH---HHCcCHHHHHhh
Confidence 378899999999999 66644 55556665655555 45555554 458889888764
No 16
>PF07607 DUF1570: Protein of unknown function (DUF1570); InterPro: IPR011464 This entry represents hypothetical proteins confined to bacteria.
Probab=96.23 E-value=0.0028 Score=54.76 Aligned_cols=38 Identities=32% Similarity=0.504 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhcCcc--C-ccccchhHHhhhHHHHHHHHHh
Q 007232 303 TVVAHELAHQWFGNLV--T-MEWWTHLWLNEGFATWVSYLAA 341 (612)
Q Consensus 303 ~~iaHElaHqWfGnlV--t-~~~w~d~WL~EGfA~y~~~~~~ 341 (612)
.+++||.+||-.-|.= . ...| =.|+.||||+|++..-.
T Consensus 3 ~T~~HEa~HQl~~N~Gl~~r~~~~-P~Wv~EGlA~yFE~~~~ 43 (128)
T PF07607_consen 3 ATIAHEATHQLAFNTGLHPRLADW-PRWVSEGLATYFETPGM 43 (128)
T ss_pred hHHHHHHHHHHHHHccccccCCCC-chHHHHhHHHHcCCCcc
Confidence 5899999999986632 1 1222 28999999999997644
No 17
>PF10026 DUF2268: Predicted Zn-dependent protease (DUF2268); InterPro: IPR018728 This domain, found in various hypothetical bacterial proteins, as well as predicted zinc dependent proteases, has no known function.
Probab=93.82 E-value=0.27 Score=46.40 Aligned_cols=100 Identities=14% Similarity=0.150 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHhCCCcCCCCccEEEecCCCcc-----chhcccceeeecccccc-cCCCChHHHHHHHHHHHHHHHHHH
Q 007232 239 VAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAG-----AMENYGLVTYRETALLY-DDQHSAAANKQRVATVVAHELAHQ 312 (612)
Q Consensus 239 ~~~~~l~~~e~~fg~~yP~~k~d~V~~p~~~~~-----ame~~gli~~~~~~ll~-~~~~~~~~~~~~~~~~iaHElaHq 312 (612)
.+.+.+....+.+ |.+.+++.++|.-+.+ .+...|...+....+++ -+.. .....+..++|||+.|.
T Consensus 4 ~i~~~~~~~~~~~----~~~~i~v~i~p~~~~~~~~~~~~g~~g~~~~~~~i~l~~~~~~---~~~~~l~~~iaHE~hH~ 76 (195)
T PF10026_consen 4 IIEEALEKSIELL----PGPDIPVFIFPADPENPFLIPELGGKGGGAIPGYIFLFLLPND---YSLEELPALIAHEYHHN 76 (195)
T ss_pred HHHHHHHHHHHHc----CCCCCCEEEEeccCCCcccccccCcccccCCCCEEEEEecCCc---ccHHHHHHHHHHHHHHH
Confidence 3445555555554 4557888766533222 11223333344443333 2221 23346889999999998
Q ss_pred HhcCccC----ccccchhHHhhhHHHHHHHHHhhhcC
Q 007232 313 WFGNLVT----MEWWTHLWLNEGFATWVSYLAADSLF 345 (612)
Q Consensus 313 WfGnlVt----~~~w~d~WL~EGfA~y~~~~~~~~~~ 345 (612)
+--..+. -..--|.-+.||+|.+++........
T Consensus 77 ~r~~~~~~~~~~~TLld~~I~EGlAe~f~~~~~g~~~ 113 (195)
T PF10026_consen 77 CRYEQIGWDPEDTTLLDSLIMEGLAEYFAEELYGEEY 113 (195)
T ss_pred HHHhccCCCCCCCCHHHHHHHhhHHHHHHHHHcCCCC
Confidence 6433332 11234667899999999987665544
No 18
>PRK04860 hypothetical protein; Provisional
Probab=89.24 E-value=0.76 Score=41.57 Aligned_cols=70 Identities=19% Similarity=0.243 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHhCCCcCCCCccEEEecCCCccchh--cccceeeecccccccCCCChHHHHHHHHHHHHHHHHHHH
Q 007232 236 ALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAME--NYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQW 313 (612)
Q Consensus 236 ~l~~~~~~l~~~e~~fg~~yP~~k~d~V~~p~~~~~ame--~~gli~~~~~~ll~~~~~~~~~~~~~~~~~iaHElaHqW 313 (612)
+...+...+..-+++||.+++.++..+- .....||+. ..+-|.+... ++.+ .....+..+|+||+||.|
T Consensus 5 ~~~~~~~~~~~a~~~f~~~f~~p~~~f~--~R~rtaG~~~l~~~~I~~Np~--ll~~-----~~~~~l~~~v~HEl~H~~ 75 (160)
T PRK04860 5 VMRRLRECLAQANLYFKRTFPEPKVSYT--QRGTSAGTAWLQSNEIRLNPV--LLLE-----NQQAFIDEVVPHELAHLL 75 (160)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCEEEEe--ecchhhcchhHhcCCeeeCHH--HHhh-----CcHHHHHhHHHHHHHHHH
Confidence 4556677788888999988887655432 122223332 2223333322 2221 133457889999999988
Q ss_pred h
Q 007232 314 F 314 (612)
Q Consensus 314 f 314 (612)
-
T Consensus 76 ~ 76 (160)
T PRK04860 76 V 76 (160)
T ss_pred H
Confidence 4
No 19
>COG4324 Predicted aminopeptidase [General function prediction only]
Probab=86.59 E-value=0.72 Score=44.15 Aligned_cols=40 Identities=35% Similarity=0.351 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHhcCccCccccchhHHhhhHHHHHHHHHhhhc
Q 007232 299 QRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSL 344 (612)
Q Consensus 299 ~~~~~~iaHElaHqWfGnlVt~~~w~d~WL~EGfA~y~~~~~~~~~ 344 (612)
..++.+|-||+|||=|. +. +|.=+||+||++.+...+++.
T Consensus 195 ~~lA~LIFHELAHQk~Y--~~----~DtAFNEsFAtaVEt~Gvr~W 234 (376)
T COG4324 195 TYLASLIFHELAHQKIY--VN----NDTAFNESFATAVETSGVRKW 234 (376)
T ss_pred HHHHHHHHHHHhhheEe--ec----CcchHhHHHHHHHHHHhHHHH
Confidence 35889999999999764 22 456789999999998776653
No 20
>PF01863 DUF45: Protein of unknown function DUF45; InterPro: IPR002725 Members of this family are found in some archaebacteria, as well as Helicobacter pylori. The proteins are 190-240 amino acids long, with the C terminus being the most conserved region, containing three conserved histidines.
Probab=86.10 E-value=5 Score=37.96 Aligned_cols=92 Identities=21% Similarity=0.337 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHhCCCcCCCCccEEEecCCCccchhcccceeeecccccccCCCChHHHHHHHHHHHHHHHHHHHh
Q 007232 235 FALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWF 314 (612)
Q Consensus 235 ~~l~~~~~~l~~~e~~fg~~yP~~k~d~V~~p~~~~~ame~~gli~~~~~~ll~~~~~~~~~~~~~~~~~iaHElaHqWf 314 (612)
.+.+.....+..+++.+|.++ +++.+=-.-. ..|....-|.|.++-..+.+.+. -+..+|+||+||.-.
T Consensus 109 ~~~~~l~~~~~~~~~~~~~~~--~~i~ir~~ks-rWGsc~~~~~I~ln~~L~~~P~~--------~idYVvvHEL~Hl~~ 177 (205)
T PF01863_consen 109 QAKEYLPERLKKYAKKLGLPP--PKIKIRDMKS-RWGSCSSKGNITLNWRLVMAPPE--------VIDYVVVHELCHLRH 177 (205)
T ss_pred HHHHHHHHHHHHHHHHcCCCc--ceEEEeehhh-ccccCCCCCcEEeecccccCCcc--------HHHHHHHHHHHHhcc
Confidence 355666777788888888643 3433322111 24555556677777763333322 367899999999876
Q ss_pred cCccCccccchhHHhhhHHHHHHHHHhhhcCCchhhHHH
Q 007232 315 GNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQ 353 (612)
Q Consensus 315 GnlVt~~~w~d~WL~EGfA~y~~~~~~~~~~~~~~~~~~ 353 (612)
.| -....| ..+++..|++.....
T Consensus 178 ~n-----Hs~~Fw-----------~~v~~~~Pd~k~~~~ 200 (205)
T PF01863_consen 178 PN-----HSKRFW-----------ALVEKYMPDYKERRK 200 (205)
T ss_pred CC-----CCHHHH-----------HHHHHHCcCHHHHHH
Confidence 44 344455 345566777654433
No 21
>smart00731 SprT SprT homologues. Predicted to have roles in transcription elongation. Contains a conserved HExxH motif, indicating a metalloprotease function.
Probab=84.54 E-value=0.88 Score=40.68 Aligned_cols=17 Identities=29% Similarity=0.425 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHhc
Q 007232 299 QRVATVVAHELAHQWFG 315 (612)
Q Consensus 299 ~~~~~~iaHElaHqWfG 315 (612)
..+..+|.|||||.+..
T Consensus 57 ~~l~~~l~HEm~H~~~~ 73 (146)
T smart00731 57 DRLRETLLHELCHAALY 73 (146)
T ss_pred HHHHhhHHHHHHHHHHH
Confidence 45778999999999975
No 22
>PF10023 DUF2265: Predicted aminopeptidase (DUF2265); InterPro: IPR014553 This group represents a predicted aminopeptidase.
Probab=83.32 E-value=1.1 Score=45.33 Aligned_cols=39 Identities=38% Similarity=0.439 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHhcCccCccccchhHHhhhHHHHHHHHHhhhc
Q 007232 300 RVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSL 344 (612)
Q Consensus 300 ~~~~~iaHElaHqWfGnlVt~~~w~d~WL~EGfA~y~~~~~~~~~ 344 (612)
.++.+|-||+|||=+. | + +|.=+||+||++.+...+.+.
T Consensus 164 ~LA~LIfHELaHq~~Y--v--~--~dt~FNEsfAtfVe~~G~~~w 202 (337)
T PF10023_consen 164 ELARLIFHELAHQTLY--V--K--GDTAFNESFATFVEREGARRW 202 (337)
T ss_pred HHHHHHHHHHhhceee--c--C--CCchhhHHHHHHHHHHHHHHH
Confidence 5899999999999543 2 1 466789999999998766554
No 23
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=82.35 E-value=1.6 Score=44.58 Aligned_cols=32 Identities=38% Similarity=0.600 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHhcCccCccccchhHHhhhHHHHHHHHHhhhc
Q 007232 301 VATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSL 344 (612)
Q Consensus 301 ~~~~iaHElaHqWfGnlVt~~~w~d~WL~EGfA~y~~~~~~~~~ 344 (612)
.-.++|||+|||- | -..|.=|+|+++++..+.
T Consensus 196 ~P~T~~HElAHq~-G-----------~a~E~EANFiayLac~~s 227 (318)
T PF12725_consen 196 LPFTICHELAHQL-G-----------FASEDEANFIAYLACINS 227 (318)
T ss_pred ccHHHHHHHHHHh-C-----------CCCHHHHHHHHHHHHhcC
Confidence 5679999999996 4 358999999999976543
No 24
>PF01447 Peptidase_M4: Thermolysin metallopeptidase, catalytic domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification. ; InterPro: IPR013856 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases that belong to the MEROPS peptidase family M4 (thermolysin family, clan MA(E)). The protein fold of the peptidase domain of thermolysin, is the type example for members of the clan MA. The thermolysin family is composed only of secreted eubacterial endopeptidases. The zinc-binding residues are H-142, H-146 and E-166, with E-143 acting as the catalytic residue. Thermolysin also contains 4 calcium-binding sites, which contribute to its unusual thermostability. The family also includes enzymes from a number of pathogens, including Legionella and Listeria, and the protein pseudolysin, all with a substrate specificity for an aromatic residue in the P1' position. Three-dimensional structure analysis has shown that the enzymes undergo a hinge-bend motion during catalysis. Pseudolysin has a broader specificity, acting on large molecules such as elastin and collagen, possibly due to its wider active site cleft []. This entry represents a domain found in peptidase M4 family members.; GO: 0004222 metalloendopeptidase activity; PDB: 3NQX_A 3NQZ_B 3NQY_B 1BQB_A 1U4G_A 1EZM_A 3DBK_A 1ESP_A 1NPC_A 1LND_E ....
Probab=75.89 E-value=5.2 Score=35.83 Aligned_cols=74 Identities=24% Similarity=0.279 Sum_probs=37.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHhCCCcCCCC--ccEEEecCCC---ccchhcccceeeecccc-cccCCCChHHHHHHHHHH
Q 007232 231 NQGKFALNVAVKTLELYKEYFAVPYSLPK--LDMIAIPDFA---AGAMENYGLVTYRETAL-LYDDQHSAAANKQRVATV 304 (612)
Q Consensus 231 ~~~~~~l~~~~~~l~~~e~~fg~~yP~~k--~d~V~~p~~~---~~ame~~gli~~~~~~l-l~~~~~~~~~~~~~~~~~ 304 (612)
..+..|...+.++.+||.+.|| .-++.. ..++..=.+. ..|.=+-..++|.+..- .+.+ ......+
T Consensus 67 ~~~vdA~~~~~~v~d~y~~~~g-r~siD~~G~~~~~~Vhyg~~~~NAfW~g~~m~yGdG~~~~f~~-------~~~~lDV 138 (150)
T PF01447_consen 67 SAAVDAHYNAGKVYDYYKNVFG-RNSIDGNGMPIISRVHYGKNYNNAFWNGSQMVYGDGDGQIFKP-------FASSLDV 138 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS-S-STTSS-S-EEEEESESSSTT-EEE-SSSEEEE---SSSBS--------GGG-HHH
T ss_pred cHHHHHHHhHHHHHHHHHHHHC-CCCcCCCCcEEEEEEeCCCCccCccccCCEEEEECCCCccccc-------Cccccce
Confidence 3455677788999999999999 666653 3343322111 12222222333333211 1111 1113578
Q ss_pred HHHHHHHH
Q 007232 305 VAHELAHQ 312 (612)
Q Consensus 305 iaHElaHq 312 (612)
+||||+|-
T Consensus 139 vaHEltHG 146 (150)
T PF01447_consen 139 VAHELTHG 146 (150)
T ss_dssp HHHHHHHH
T ss_pred eeeccccc
Confidence 99999996
No 25
>PF12315 DUF3633: Protein of unknown function (DUF3633); InterPro: IPR022087 This domain family is found in bacteria and eukaryotes, and is approximately 210 amino acids in length. The family is found in association with PF00412 from PFAM.
Probab=74.03 E-value=5.1 Score=37.45 Aligned_cols=41 Identities=27% Similarity=0.392 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHhcCccCccccchhHHhhhHHHHHHHHHhhh
Q 007232 301 VATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADS 343 (612)
Q Consensus 301 ~~~~iaHElaHqWfGnlVt~~~w~d~WL~EGfA~y~~~~~~~~ 343 (612)
.-.++|||+.|-|.- ..-----+.++-||+++-+++.+++.
T Consensus 93 ~gsiLAHE~mHa~Lr--l~g~~~L~~~vEEGiCqvla~~wL~~ 133 (212)
T PF12315_consen 93 TGSILAHELMHAWLR--LNGFPNLSPEVEEGICQVLAYLWLES 133 (212)
T ss_pred HhhHHHHHHHHHHhc--ccCCCCCChHHHHHHHHHHHHHHHhh
Confidence 456899999999973 12122236789999999999987764
No 26
>PF03272 Enhancin: Viral enhancin protein; InterPro: IPR004954 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M60 (enhancin family, clan MA(E)). The active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The viral enhancin protein, or enhancing factor, is involved in disruption of the peritrophic membrane and fusion of nucleocapsids with mid-gut cells.; GO: 0016032 viral reproduction
Probab=66.67 E-value=1.7e+02 Score=33.87 Aligned_cols=129 Identities=14% Similarity=0.188 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHhcCcc-CccccchhHHhhhHHHHHHHHHhhhcCC---chhh-H-HHH-HHHHHhhhcccccCCCCCcee
Q 007232 303 TVVAHELAHQWFGNLV-TMEWWTHLWLNEGFATWVSYLAADSLFP---EWKI-W-TQF-LDECTEGLRLDGLAESHPIEV 375 (612)
Q Consensus 303 ~~iaHElaHqWfGnlV-t~~~w~d~WL~EGfA~y~~~~~~~~~~~---~~~~-~-~~~-~~~~~~~~~~d~~~~~~pl~~ 375 (612)
-.+-|||+|.+=+..+ .-..+.+.| |-=+|.++++..+..... .|-+ . .+. ....+.++ .+ ...
T Consensus 238 W~~LHEIgHgYd~~F~~n~~~~~EVW-nNI~~d~yQ~~~~~~~e~~~~~wly~~G~r~~~e~~i~~~-i~---~~~---- 308 (775)
T PF03272_consen 238 WGALHEIGHGYDFGFTRNGTYLNEVW-NNILADRYQYTYMTQDERQTDGWLYDYGQRERVEREIIAL-ID---NNK---- 308 (775)
T ss_pred chhhhhhhhhcceeEeeCCcchhhhh-hhhhhhhhhhhhcChhhhhhccceecCCchHHHHHHHHHH-Hh---cCC----
Confidence 3689999999988777 334566888 777888888765542110 1110 0 000 00000000 00 000
Q ss_pred ecCCcccccccccee-eeechhHHHHHHHHhhCHHHHHHHHHHHHHHhccCCC--CHHHHHHHHHhc-cCCCHHHHHHHH
Q 007232 376 EVNHTGEIDEIFDAI-SYRKGASVIRMLQNYLGAECFQRSLASYIKKYACSNA--KTEDLWAALEEG-SGEPVNKLMNSW 451 (612)
Q Consensus 376 ~~~~~~~~~~~f~~i-~Y~Kg~~vl~mL~~~lG~~~F~~~l~~yl~~~~~~~~--~~~df~~~l~~~-~~~~l~~~~~~W 451 (612)
.|+.. ...|=..+..|+...-|++.|++.=+.|-+. .-.+. .--.+++.+... ++.|+..+++-|
T Consensus 309 ----------~~~~w~~r~rL~~l~~~m~~~~G~~~f~~~n~~~R~~-~~~~~~~~~~~i~d~l~~~~~~~D~~p~~~l~ 377 (775)
T PF03272_consen 309 ----------PFDSWDLRERLIFLTWLMNTKAGKDAFTEMNQEYRQL-NTNGFNPNDHQIFDWLASLYSGYDFTPYFQLV 377 (775)
T ss_pred ----------CcccccHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh-ccCCCCcccccHHHHHHHhhcCCchHhHHHHh
Confidence 12221 2245555556888889999998877777665 22222 112333444455 888999888888
No 27
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=66.62 E-value=92 Score=27.68 Aligned_cols=47 Identities=23% Similarity=0.437 Sum_probs=33.8
Q ss_pred cccceeEEEecCceEEEEEeCCccCCceEEEEEEEEeeecCCCCceEE
Q 007232 73 ALEPTKVELVEADEILVLEFAETLPTGMGVLAIGFEGVLNDKMKGFYR 120 (612)
Q Consensus 73 ~~~~~~~~~~~~~~~l~i~l~~~l~~g~~~l~i~y~g~~~~~~~G~~~ 120 (612)
.+....+..+.+++.+.|.+++|++|| -+++|.+...-+....|.|.
T Consensus 76 ~ipl~~v~~~~~~~~i~I~f~~PV~pG-~tv~V~l~~v~NP~~~G~Y~ 122 (146)
T PF10989_consen 76 SIPLAEVEWDEDGRTITITFDEPVPPG-TTVTVVLSPVRNPRSGGTYQ 122 (146)
T ss_pred ccCceEEEEcCCCCEEEEEeCCCCCCC-CEEEEEEEeeeCCCCCCeEE
Confidence 444466888889999999999999999 44555555544555557665
No 28
>PRK04351 hypothetical protein; Provisional
Probab=65.40 E-value=7.5 Score=34.73 Aligned_cols=16 Identities=25% Similarity=0.486 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 007232 298 KQRVATVVAHELAHQW 313 (612)
Q Consensus 298 ~~~~~~~iaHElaHqW 313 (612)
...+..+|+||++|-.
T Consensus 58 ~~~l~~vv~HElcH~~ 73 (149)
T PRK04351 58 LEELIGIIKHELCHYH 73 (149)
T ss_pred HHHHHhhHHHHHHHHH
Confidence 4568899999999953
No 29
>PF04234 CopC: CopC domain; InterPro: IPR007348 CopC is a bacterial blue copper protein that binds 1 atom of copper per protein molecule. Along with CopA, CopC mediates copper resistance by sequestration of copper in the periplasm [].; GO: 0005507 copper ion binding, 0046688 response to copper ion, 0042597 periplasmic space; PDB: 1IX2_B 1LYQ_A 2C9P_C 2C9R_A 2C9Q_A 1M42_A 1OT4_A 1NM4_A.
Probab=65.11 E-value=39 Score=27.60 Aligned_cols=61 Identities=11% Similarity=0.165 Sum_probs=32.9
Q ss_pred cCEEEEEec-Cee--eeEEEeeeeccCCCccccceeEEEecCceEEEEEeCCccCCceEEEEEEEEe
Q 007232 46 TKFIVLNAA-DLT--INNRSVSFTNKVSSKALEPTKVELVEADEILVLEFAETLPTGMGVLAIGFEG 109 (612)
Q Consensus 46 ~~~i~L~~~-~l~--i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~l~i~l~~~l~~g~~~l~i~y~g 109 (612)
.+.|.|... .++ ...+.+.+.++ ..+.......+.....+.+.++.+|++|.|+|.-+-.+
T Consensus 19 P~~v~L~F~e~v~~~~s~v~v~~~~g---~~v~~~~~~~~~~~~~~~~~l~~~l~~G~YtV~wrvvs 82 (97)
T PF04234_consen 19 PEEVTLTFSEPVEPGFSSVTVTDPDG---KRVDLGEPTVDGDGKTLTVPLPPPLPPGTYTVSWRVVS 82 (97)
T ss_dssp -SSEEEEESS---CCC-EEEEEEEEE---TTSCTCEEEEEESTTEEEEEESS---SEEEEEEEEEEE
T ss_pred CCEEEEEeCCCCccCccEEEEEcCCC---ceeecCcceecCCceEEEEECCCCCCCceEEEEEEEEe
Confidence 455666654 333 56666665432 22333333444456789999999999999988765544
No 30
>PF01435 Peptidase_M48: Peptidase family M48 This is family M48 in the peptidase classification. ; InterPro: IPR001915 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M48 (Ste24 endopeptidase family, clan M-); members of both subfamily are represented. The members of this set of proteins are mostly described as probable protease htpX homologue (3.4.24 from EC) or CAAX prenyl protease 1, which proteolytically removes the C-terminal three residues of farnesylated proteins. They are integral membrane proteins associated with the endoplasmic reticulum and Golgi, binding one zinc ion per subunit. In Saccharomyces cerevisiae (Baker's yeast) Ste24p is required for the first NH2-terminal proteolytic processing event within the a-factor precursor, which takes place after COOH-terminal CAAX modification is complete. The Ste24p contains multiple predicted membrane spans, a zinc metalloprotease motif (HEXXH), and a COOH-terminal ER retrieval signal (KKXX). The HEXXH protease motif is critical for Ste24p activity, since Ste24p fails to function when conserved residues within this motif are mutated. The Ste24p homologues occur in a diverse group of organisms, including Escherichia coli, Schizosaccharomyces pombe (Fission yeast), Haemophilus influenzae, and Homo sapiens (Human), which indicates that the gene is highly conserved throughout evolution. Ste24p and the proteins related to it define a subfamily of proteins that are likely to function as intracellular, membrane-associated zinc metalloproteases []. HtpX is a zinc-dependent endoprotease member of the membrane-localized proteolytic system in E. coli, which participates in the proteolytic quality control of membrane proteins in conjunction with FtsH, a membrane-bound and ATP-dependent protease. Biochemical characterisation revealed that HtpX undergoes self-degradation upon cell disruption or membrane solubilization. It can also degraded casein and cleaves solubilized membrane proteins, for example, SecY []. Expression of HtpX in the plasma membrane is under the control of CpxR, with the metalloproteinase active site of HtpX located on the cytosolic side of the membrane. This suggests a potential role for HtpX in the response to mis-folded proteins [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis, 0016020 membrane; PDB: 3CQB_A 3C37_B.
Probab=64.56 E-value=5.2 Score=38.38 Aligned_cols=70 Identities=20% Similarity=0.273 Sum_probs=34.9
Q ss_pred HHHHHHHHHhCCCcCCCCccEEEecCCCccchhcc----cceeeecccccccCCCChHHHHHHHHHHHHHHHHHHHhcCc
Q 007232 242 KTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENY----GLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNL 317 (612)
Q Consensus 242 ~~l~~~e~~fg~~yP~~k~d~V~~p~~~~~ame~~----gli~~~~~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGnl 317 (612)
+.++-+.+..|.+.|.+++-++-.+. ..|.-.. ..|.+... ++.. ....++..++|||++|-.-++.
T Consensus 35 ~~v~~l~~~~~~~~~~~~v~v~~~~~--~NA~~~g~~~~~~I~v~~~-ll~~------~~~~el~aVlaHElgH~~~~h~ 105 (226)
T PF01435_consen 35 RIVEELARRAGLGIPPPRVYVIDSPS--PNAFATGGGPRKRIVVTSG-LLES------LSEDELAAVLAHELGHIKHRHI 105 (226)
T ss_dssp HHHHHHHHHHHCTSS--EEEEE--SS--EEEEEETTTC--EEEEEHH-HHHH------SSHHHHHHHHHHHHHHHHTTHC
T ss_pred HHHHHHHHHhcCCCCCCeEEEEcCCC--CcEEEEccCCCcEEEEeCh-hhhc------ccHHHHHHHHHHHHHHHHcCCc
Confidence 33443444445555654444443343 3332221 12555555 4321 1234588999999999998765
Q ss_pred cCc
Q 007232 318 VTM 320 (612)
Q Consensus 318 Vt~ 320 (612)
...
T Consensus 106 ~~~ 108 (226)
T PF01435_consen 106 LKS 108 (226)
T ss_dssp CCC
T ss_pred chH
Confidence 444
No 31
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=62.81 E-value=8.7 Score=40.58 Aligned_cols=57 Identities=25% Similarity=0.310 Sum_probs=34.7
Q ss_pred CCCCccEEEecCCCccchhccc-ceeeecccccccCCCChHHHHHHHHHHHHHHHHHHHhcCcc
Q 007232 256 SLPKLDMIAIPDFAAGAMENYG-LVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLV 318 (612)
Q Consensus 256 P~~k~d~V~~p~~~~~ame~~g-li~~~~~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGnlV 318 (612)
|-.-++++.|.+-...|-..+| .|.+....++..+ ...+++.+||||++|-==++++
T Consensus 90 ~~~~f~f~lV~d~~iNAFA~~Gg~v~vntGLll~ae------~esElagViAHEigHv~qrH~a 147 (484)
T COG4783 90 VKTPFTFFLVNDDSINAFATPGGYVVVNTGLLLTAE------NESELAGVIAHEIGHVAQRHLA 147 (484)
T ss_pred CCCCeEEEEecCCccchhhcCCceEEEehHHHHhcC------CHHHHHHHHHHHHHHHhhhhHH
Confidence 3345788888776666666644 3444444333322 2345899999999995444443
No 32
>PF06114 DUF955: Domain of unknown function (DUF955); InterPro: IPR010359 This is a family of bacterial and viral proteins with undetermined function. A conserved H-E-X-X-H motif is suggestive of a catalytic active site and shows similarity to IPR001915 from INTERPRO.; PDB: 3DTE_A 3DTK_A 3DTI_A.
Probab=62.05 E-value=8.5 Score=32.38 Aligned_cols=18 Identities=28% Similarity=0.222 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHhcCcc
Q 007232 301 VATVVAHELAHQWFGNLV 318 (612)
Q Consensus 301 ~~~~iaHElaHqWfGnlV 318 (612)
...+++|||+|.+++..-
T Consensus 42 ~~f~laHELgH~~~~~~~ 59 (122)
T PF06114_consen 42 QRFTLAHELGHILLHHGD 59 (122)
T ss_dssp HHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHhhhcc
Confidence 457899999999998544
No 33
>PF10263 SprT-like: SprT-like family; InterPro: IPR006640 This is a family of uncharacterised bacterial proteins which includes Escherichia coli SprT (P39902 from SWISSPROT). SprT is described as a regulator of bolA gene in stationary phase []. The majority of members contain the metallopeptidase zinc binding signature which has a HExxH motif, however there is no evidence for them being metallopeptidases.
Probab=58.67 E-value=7.2 Score=35.11 Aligned_cols=18 Identities=22% Similarity=0.290 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 007232 298 KQRVATVVAHELAHQWFG 315 (612)
Q Consensus 298 ~~~~~~~iaHElaHqWfG 315 (612)
...+..+|.|||+|.|..
T Consensus 57 ~~~~~~tL~HEm~H~~~~ 74 (157)
T PF10263_consen 57 EEELIDTLLHEMAHAAAY 74 (157)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 446889999999999984
No 34
>PF13699 DUF4157: Domain of unknown function (DUF4157)
Probab=55.60 E-value=17 Score=28.59 Aligned_cols=66 Identities=17% Similarity=0.196 Sum_probs=31.0
Q ss_pred HHHHHHHHhCCCcCCCCccEEEecCCCc--cchhcccceeeecccccccCCCChHHHHHHHHHHHHHHHHHHH
Q 007232 243 TLELYKEYFAVPYSLPKLDMIAIPDFAA--GAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQW 313 (612)
Q Consensus 243 ~l~~~e~~fg~~yP~~k~d~V~~p~~~~--~ame~~gli~~~~~~ll~~~~~~~~~~~~~~~~~iaHElaHqW 313 (612)
+-..+|..||.+ +.+..+-.-|.-.. ..|. +--.+.... +.+.+..-.. ....-..+++||++|-+
T Consensus 6 ~r~~~e~~~G~d--l~~Vrvh~~~~a~~~~~~~~-A~A~T~G~~-I~f~~g~~~~-~s~~~~~llaHEl~Hv~ 73 (79)
T PF13699_consen 6 IRSRLERAFGAD--LSDVRVHTGPAASRAAAALG-ARAFTVGND-IYFAPGKYNP-DSPEGRALLAHELAHVV 73 (79)
T ss_pred HHHHHHHHhCCC--ccceEEEeCCchhhhhhccC-CeEEEECCE-EEEcCCCcCC-CCCCcchhHhHHHHHHH
Confidence 456789999954 55555543332111 1111 112333333 4443221000 00113578999999965
No 35
>PF11940 DUF3458: Domain of unknown function (DUF3458); InterPro: IPR024601 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain, which contains a conserved FSAPV sequence motif, is found in the C-terminal of alanyl aminopeptidases that belong to MEROPS peptidase family M1 (aminopeptidase N, clan MA). ; PDB: 3EBH_A 3EBG_A 3T8V_A 3Q44_A 3Q43_A 3EBI_A 3PUU_A 3B37_A 3B2P_A 3B3B_A ....
Probab=54.86 E-value=50 Score=34.44 Aligned_cols=73 Identities=16% Similarity=0.172 Sum_probs=39.2
Q ss_pred EEEEEEEEeecCCCCCCCeEEEEEEEEE--Ccccc-----eeeEEeeccceEEEecccccccccCCCCCCceEEeccCce
Q 007232 468 KLELEQSQFLSSGSPGDGQWIVPITLCC--GSYDV-----CKNFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQT 540 (612)
Q Consensus 468 ~~~i~Q~~f~~~~~~~~~~w~iPl~~~~--~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~N~~~~ 540 (612)
+++++|+.....++.+...|.|||.+.. .++.. ...+.+++.++++.+..+.+ . -..-++-+.+
T Consensus 6 ~Ltl~Q~~p~tpgq~~K~P~~IPv~~gLl~~~G~~~~~~~~~vl~L~~~~qtf~F~~v~~-------~--PvpSllRgFS 76 (367)
T PF11940_consen 6 TLTLSQSTPPTPGQPEKQPLHIPVRVGLLDPDGKELPLRLERVLELTEAEQTFTFEGVSE-------K--PVPSLLRGFS 76 (367)
T ss_dssp EEEEEEEE--BTTBSS-----EEEEEEEE-TTS-B-SEEESEEEEE-SSEEEEEES---S-----------EEEESTTG-
T ss_pred EEEEEecCCCCCCCCCCCCeeeeeEEEEECCCCCCccCCCCceEEeccCeEEEEEeCCCC-------C--ceeehhcCcc
Confidence 5778888765555566679999999843 33322 12356778888998876422 2 3567889999
Q ss_pred EEEEEEcCH
Q 007232 541 GFYRVKYDK 549 (612)
Q Consensus 541 gyyrV~Yd~ 549 (612)
.+-++.||.
T Consensus 77 APV~l~~~~ 85 (367)
T PF11940_consen 77 APVKLEYDY 85 (367)
T ss_dssp SSSEEE---
T ss_pred cceEecCCC
Confidence 999999874
No 36
>COG2372 CopC Uncharacterized protein, homolog of Cu resistance protein CopC [General function prediction only]
Probab=54.34 E-value=34 Score=29.37 Aligned_cols=60 Identities=12% Similarity=0.151 Sum_probs=35.7
Q ss_pred CEEEEEec---CeeeeEEEeeeeccCCCccccceeEEEecCc-eEEEEEeCCccCCceEEEEEEEEe
Q 007232 47 KFIVLNAA---DLTINNRSVSFTNKVSSKALEPTKVELVEAD-EILVLEFAETLPTGMGVLAIGFEG 109 (612)
Q Consensus 47 ~~i~L~~~---~l~i~~v~i~~~~~~~~~~~~~~~~~~~~~~-~~l~i~l~~~l~~g~~~l~i~y~g 109 (612)
..|.|+.. ...+..+.+.+.++ ..+.......+..+ ..++|.++.+|++|.|+|.-+..+
T Consensus 47 ~~i~L~Fse~ve~~fs~~~l~~~d~---~~v~t~~~~~~~~~~~~l~v~l~~~L~aG~Y~v~WrvvS 110 (127)
T COG2372 47 AAITLEFSEGVEPGFSGAKLTGPDG---EEVATAGTKLDEQNHTQLEVPLPQPLKAGVYTVDWRVVS 110 (127)
T ss_pred eeEEEecCCccCCCcceeEEECCCC---CccccCcccccccCCcEEEecCcccCCCCcEEEEEEEEe
Confidence 35566554 23335566655332 12222233333333 359999999999999999887765
No 37
>COG1451 Predicted metal-dependent hydrolase [General function prediction only]
Probab=54.24 E-value=94 Score=29.91 Aligned_cols=93 Identities=18% Similarity=0.312 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHhCCCcCCCCccEEEecCCCccchhcccceeeecccccccCCCChHHHHHHHHHHHHHHHHHHH
Q 007232 234 KFALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQW 313 (612)
Q Consensus 234 ~~~l~~~~~~l~~~e~~fg~~yP~~k~d~V~~p~~~~~ame~~gli~~~~~~ll~~~~~~~~~~~~~~~~~iaHElaHqW 313 (612)
+.+.+.....++.+.+.+|.++.- +.+-..-. ..|.-...|-|.+... +..- ....+..+++||+||-=
T Consensus 119 ~~~~~~l~~~~~~~~~~l~~~~~~--~~ik~~k~-~WGScs~~~~i~~~~~-l~~~-------p~~~i~YVvvHELaHLk 187 (223)
T COG1451 119 EILREILEIRLKEYAKKLGVPPRA--IKLKNMKR-RWGSCSKAGEIRFNWR-LVMA-------PEEVIDYVVVHELAHLK 187 (223)
T ss_pred HHHHHHHHHHHHHHHHHhCCCccc--eeeeeccc-eeeeecCCCcEEeehh-hhcC-------CHHHHHHHHHHHHHHHh
Confidence 345666777788889999976542 22211111 1233233333333333 1111 22347789999999998
Q ss_pred hcCccCccccchhHHhhhHHHHHHHHHhhhcCCchhhHHH
Q 007232 314 FGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQ 353 (612)
Q Consensus 314 fGnlVt~~~w~d~WL~EGfA~y~~~~~~~~~~~~~~~~~~ 353 (612)
..| --..+| ..++..+|++.....
T Consensus 188 e~n-----Hs~~Fw-----------~lv~~~~P~~~~~~~ 211 (223)
T COG1451 188 EKN-----HSKRFW-----------RLVEKYMPDYRAAKR 211 (223)
T ss_pred hhh-----ccHHHH-----------HHHHHHCCChHHHHH
Confidence 887 223345 344566777654433
No 38
>COG3227 LasB Zinc metalloprotease (elastase) [Amino acid transport and metabolism]
Probab=53.90 E-value=14 Score=39.08 Aligned_cols=110 Identities=21% Similarity=0.209 Sum_probs=59.8
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHhCCCcCCCC--ccEEEecCCCccchhcccceeeecccccccCCCChH-HHHHHHHH
Q 007232 227 VGKANQGKFALNVAVKTLELYKEYFAVPYSLPK--LDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAA-ANKQRVAT 303 (612)
Q Consensus 227 ~~~~~~~~~~l~~~~~~l~~~e~~fg~~yP~~k--~d~V~~p~~~~~ame~~gli~~~~~~ll~~~~~~~~-~~~~~~~~ 303 (612)
++....+..|-..+.+..+||.++|| .-.++. +.++..-.+. ---+| .......++|.+..... ........
T Consensus 265 ~~~~~a~~dAh~~~g~vyD~yk~~fg-r~S~Dn~g~~l~s~vHyG-~~ynN---AfWdG~qMvyGDGDG~~f~~~S~sLD 339 (507)
T COG3227 265 PSSDEAAVDAHYNAGKVYDYYKNTFG-RNSYDNNGMPLVSTVHYG-KNYNN---AFWDGDQMVYGDGDGSFFTPFSGSLD 339 (507)
T ss_pred ccchhhhHHHHhhcchHHHHHHHHhc-ccCcCCCCCceEEEEeec-ccccc---ccccCceeEeecCCcceecccccccc
Confidence 33444556677788999999999999 334443 3344322221 01121 12222334444332111 01111246
Q ss_pred HHHHHHHHHHhc---CccCccccchhHHhhhHHHHHHHHHhhh
Q 007232 304 VVAHELAHQWFG---NLVTMEWWTHLWLNEGFATWVSYLAADS 343 (612)
Q Consensus 304 ~iaHElaHqWfG---nlVt~~~w~d~WL~EGfA~y~~~~~~~~ 343 (612)
++||||.|.--+ +|+.-... -=|||+|+.-+.-.+...
T Consensus 340 VvAHElTHGvtq~tA~L~Y~~qs--GALNEsfSDvfG~~i~~~ 380 (507)
T COG3227 340 VVAHELTHGVTQQTAGLIYRGQS--GALNESFSDVFGTLIEQY 380 (507)
T ss_pred eehhhhcchhhhhccCceecCCC--CchhhHHHHHHHHHHHHH
Confidence 899999995544 45544332 258999999998654433
No 39
>PRK03982 heat shock protein HtpX; Provisional
Probab=51.74 E-value=39 Score=34.00 Aligned_cols=66 Identities=26% Similarity=0.374 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHhCCCcCCCCccEEEecCCCccchh-----cccceeeecccccccCCCChHHHHHHHHHHHHHHHHHHHh
Q 007232 240 AVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAME-----NYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWF 314 (612)
Q Consensus 240 ~~~~l~~~e~~fg~~yP~~k~d~V~~p~~~~~ame-----~~gli~~~~~~ll~~~~~~~~~~~~~~~~~iaHElaHqWf 314 (612)
..+.++-+.+..|+| .+++-++ ++-...|+- .-|.|...+. ++-. ....++..++|||++|-=-
T Consensus 70 L~~~v~~la~~~g~~--~p~v~v~--~~~~~NAfa~G~~~~~~~V~vt~g-Ll~~------l~~~El~AVlAHElgHi~~ 138 (288)
T PRK03982 70 LYRIVERLAERANIP--KPKVAIV--PTQTPNAFATGRDPKHAVVAVTEG-ILNL------LNEDELEGVIAHELTHIKN 138 (288)
T ss_pred HHHHHHHHHHHcCCC--CCeEEEE--eCCCcceEEeccCCCCeEEEeehH-HHhh------CCHHHHHHHHHHHHHHHHc
Confidence 445555566667764 4455443 332222222 1234544444 3211 1234689999999999876
Q ss_pred cC
Q 007232 315 GN 316 (612)
Q Consensus 315 Gn 316 (612)
++
T Consensus 139 ~h 140 (288)
T PRK03982 139 RD 140 (288)
T ss_pred CC
Confidence 54
No 40
>COG0501 HtpX Zn-dependent protease with chaperone function [Posttranslational modification, protein turnover, chaperones]
Probab=49.18 E-value=30 Score=34.89 Aligned_cols=65 Identities=25% Similarity=0.311 Sum_probs=39.5
Q ss_pred HHHHhCCCcCCCCccEEEecCCCccchhcc---cceeeecccccccCCCChHHHHHHHHHHHHHHHHHHHhcCccC
Q 007232 247 YKEYFAVPYSLPKLDMIAIPDFAAGAMENY---GLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVT 319 (612)
Q Consensus 247 ~e~~fg~~yP~~k~d~V~~p~~~~~ame~~---gli~~~~~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGnlVt 319 (612)
....-|++ +.+++.++-.|....-++... |.|.+.+. ++- . ....++..+++||++|.=-++.+.
T Consensus 108 ~a~~~~~~-~~~~v~i~~~~~~NAFa~g~~~~~~~V~vt~g-Ll~--~----l~~dEl~aVlaHElgHi~~rd~~~ 175 (302)
T COG0501 108 LARQAGIP-HMPEVYILETPQPNAFALGGGPKNGRVVVTTG-LLD--L----LNDDELEAVLAHELGHIKNRHTLV 175 (302)
T ss_pred HHHHCCCC-CCCeeEEecCCCccceecCCCCCCeeEEecHH-HHh--h----CCHHHHHHHHHHHHHHHhcccHHH
Confidence 34444533 245666666555545555553 77777766 332 1 123458899999999988775544
No 41
>COG3091 SprT Zn-dependent metalloprotease, SprT family [General function prediction only]
Probab=48.95 E-value=28 Score=30.80 Aligned_cols=74 Identities=20% Similarity=0.174 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHhCCCcCCCCccEEEecCCCccchhcccceeeecccccccCCCChHHHHHHHHHHHHHHHHH----HHhc
Q 007232 240 AVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAH----QWFG 315 (612)
Q Consensus 240 ~~~~l~~~e~~fg~~yP~~k~d~V~~p~~~~~ame~~gli~~~~~~ll~~~~~~~~~~~~~~~~~iaHElaH----qWfG 315 (612)
..+.++-.+..|+-++|.++...= .-++. .|--.+..+.+=++|..-.......+..+|.||||| |=||
T Consensus 7 L~~~~~~as~~~~r~~~~p~~~~n------~Rg~t-aG~ayL~~~~I~lNP~ll~en~~~f~~~vV~HELaHl~ly~~~g 79 (156)
T COG3091 7 LQQCVEQASLKFFRKFFRPKASYN------QRGRT-AGGAYLLKSEIRLNPKLLEENGEDFIEQVVPHELAHLHLYQEFG 79 (156)
T ss_pred HHHHHHHHHHHhcCCCCCcceehh------hhhhh-cchhhccccccccCHHHHHHccHHHHHHHHHHHHHHHHHHHHcC
Confidence 344555555555548888775431 11111 122222222233333221122233467889999887 4444
Q ss_pred CccCcc
Q 007232 316 NLVTME 321 (612)
Q Consensus 316 nlVt~~ 321 (612)
.+.+.
T Consensus 80 -r~~ph 84 (156)
T COG3091 80 -RYKPH 84 (156)
T ss_pred -CCCCC
Confidence 44443
No 42
>cd04269 ZnMc_adamalysin_II_like Zinc-dependent metalloprotease; adamalysin_II_like subfamily. Adamalysin II is a snake venom zinc endopeptidase. This subfamily contains other snake venom metalloproteinases, as well as membrane-anchored metalloproteases belonging to the ADAM family. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions.
Probab=47.90 E-value=65 Score=30.03 Aligned_cols=14 Identities=43% Similarity=0.582 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHH
Q 007232 300 RVATVVAHELAHQW 313 (612)
Q Consensus 300 ~~~~~iaHElaHqW 313 (612)
..+.++|||++|++
T Consensus 130 ~~a~~~AHElGH~l 143 (194)
T cd04269 130 LFAVTMAHELGHNL 143 (194)
T ss_pred HHHHHHHHHHHhhc
Confidence 46789999999996
No 43
>PRK05457 heat shock protein HtpX; Provisional
Probab=47.51 E-value=36 Score=34.18 Aligned_cols=68 Identities=28% Similarity=0.445 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHhCCCcCCCCccEEEecCCCc---cchhcccceeeecccccccCCCChHHHHHHHHHHHHHHHHHHHhcC
Q 007232 240 AVKTLELYKEYFAVPYSLPKLDMIAIPDFAA---GAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGN 316 (612)
Q Consensus 240 ~~~~l~~~e~~fg~~yP~~k~d~V~~p~~~~---~ame~~gli~~~~~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGn 316 (612)
..+.++-+.+..|+ |.+++-++-.+.... |.-.+-+.|.+... ++-. .+..++..++|||++|.--|+
T Consensus 79 L~~~v~~la~~~g~--p~p~v~v~~~~~~NAfa~G~~~~~~~V~vt~g-Ll~~------L~~~El~aVlAHElgHi~~~d 149 (284)
T PRK05457 79 LVETVARQARQAGI--GMPEVAIYHSPEINAFATGASKNNSLVAVSTG-LLQN------MSRDEVEAVLAHEISHIANGD 149 (284)
T ss_pred HHHHHHHHHHhCCC--CCCCEEEEeCCCceEEEecCCCCCeEEEeehH-Hhhh------CCHHHHHHHHHHHHHHHHcCC
Confidence 34555666777775 467766554332221 21122334555554 2211 123468899999999987664
No 44
>PF08325 WLM: WLM domain; InterPro: IPR013536 The WLM (WSS1-like metalloprotease) domain is a globular domain related to the zincin-like superfamily of Zn-dependent peptidase. Since the WLM domain contains all known active site residues of zincins, it is predicted to be a catalytically active peptidase domain. The WLM domain is a eukaryotic domain represented in plants, fungi, Plasmodium, and kinetoplastids. By contrast, it is absent in animals, Cryptosporidium, and Microsporidia, suggesting that it has been lost on multiple occasions during the evolution of eukaryotes. The WLM domain is found either in stand-alone form or in association with other domains such as the RanBP2 zinc finger , the ubiquitin domain, or the PUB/PUG domain. This domain could function as a specific de-SUMOylating domain of distinct protein complexes in the nucleus and the cytoplasm []. It has been suggested to form a segregated alpha/beta structure with eight helices and five strands. Proteins containign this domain include yeast WSS1 (a weak suppressor of the Ub-related protein SMT3), and various putative metalloproteases from plant and fungal species.
Probab=46.96 E-value=13 Score=34.57 Aligned_cols=21 Identities=29% Similarity=0.385 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcC
Q 007232 296 ANKQRVATVVAHELAHQWFGN 316 (612)
Q Consensus 296 ~~~~~~~~~iaHElaHqWfGn 316 (612)
-....+..++.|||||.++|+
T Consensus 77 l~~~~i~~t~lHELaH~~~~~ 97 (186)
T PF08325_consen 77 LPYETILGTMLHELAHNVHGP 97 (186)
T ss_pred eeHHHHHHHHHHHHHhcccCC
Confidence 445578999999999999886
No 45
>PRK01345 heat shock protein HtpX; Provisional
Probab=45.06 E-value=45 Score=34.02 Aligned_cols=68 Identities=28% Similarity=0.273 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHhCCCcCCCCccEEEecCCCccchhc---ccceeeecccccccCCCChHHHHHHHHHHHHHHHHHHHhcC
Q 007232 240 AVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMEN---YGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGN 316 (612)
Q Consensus 240 ~~~~l~~~e~~fg~~yP~~k~d~V~~p~~~~~ame~---~gli~~~~~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGn 316 (612)
..+.++-+.+..|+| .+++-++-.+....-+... -+.|.+.+. |+-. ....++..++|||++|.=-++
T Consensus 69 L~~~v~~La~~agi~--~p~v~vid~~~~NAFa~G~~~~~~~V~vt~g-LL~~------L~~dEL~aVlAHElgHi~~~d 139 (317)
T PRK01345 69 LYRMVRDLARRAGLP--MPKVYIIDNPQPNAFATGRNPENAAVAATTG-LLQR------LSPEEVAGVMAHELAHVKNRD 139 (317)
T ss_pred HHHHHHHHHHHcCCC--CCcEEEEcCCCcceEEecCCCCCeEEEechH-HHhh------CCHHHHHHHHHHHHHHHHcCC
Confidence 455666677778865 4565443222222222221 224555544 3321 123468899999999987654
No 46
>PHA02456 zinc metallopeptidase motif-containing protein
Probab=44.56 E-value=11 Score=31.02 Aligned_cols=14 Identities=43% Similarity=0.817 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHh
Q 007232 301 VATVVAHELAHQWF 314 (612)
Q Consensus 301 ~~~~iaHElaHqWf 314 (612)
...+++||++|-|=
T Consensus 79 C~~TL~HEL~H~WQ 92 (141)
T PHA02456 79 CRDTLAHELNHAWQ 92 (141)
T ss_pred hHHHHHHHHHHHHh
Confidence 56789999999993
No 47
>PRK03001 M48 family peptidase; Provisional
Probab=43.89 E-value=35 Score=34.18 Aligned_cols=66 Identities=21% Similarity=0.272 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHhCCCcCCCCccEEEecCCCccchh-----cccceeeecccccccCCCChHHHHHHHHHHHHHHHHHHHh
Q 007232 240 AVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAME-----NYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWF 314 (612)
Q Consensus 240 ~~~~l~~~e~~fg~~yP~~k~d~V~~p~~~~~ame-----~~gli~~~~~~ll~~~~~~~~~~~~~~~~~iaHElaHqWf 314 (612)
..+.++-+.+..|+|. +++-++ ++-...|.- ..+.|.+.+. ++-. ....++..++|||++|-=-
T Consensus 69 L~~~v~~la~~~g~~~--p~v~v~--~~~~~NAfa~G~~~~~~~Ivvt~g-Ll~~------l~~~El~aVlAHElgHi~~ 137 (283)
T PRK03001 69 FYRMVRELAQRAGLPM--PKVYLI--NEDQPNAFATGRNPEHAAVAATTG-ILRV------LSEREIRGVMAHELAHVKH 137 (283)
T ss_pred HHHHHHHHHHHcCCCC--CeEEEe--cCCCcceEEecCCCCCeEEEecHH-HHhh------CCHHHHHHHHHHHHHHHhC
Confidence 4456666677777654 454333 332111111 1234555444 2211 1234688999999999765
Q ss_pred cC
Q 007232 315 GN 316 (612)
Q Consensus 315 Gn 316 (612)
++
T Consensus 138 ~h 139 (283)
T PRK03001 138 RD 139 (283)
T ss_pred CC
Confidence 53
No 48
>COG2856 Predicted Zn peptidase [Amino acid transport and metabolism]
Probab=43.83 E-value=86 Score=29.90 Aligned_cols=40 Identities=18% Similarity=-0.024 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHhcCccC-----ccccchhHHhhhHHHHHHHHH
Q 007232 301 VATVVAHELAHQWFGNLVT-----MEWWTHLWLNEGFATWVSYLA 340 (612)
Q Consensus 301 ~~~~iaHElaHqWfGnlVt-----~~~w~d~WL~EGfA~y~~~~~ 340 (612)
-..++|||+.|-|+..... ...|...=..|.-|++++..+
T Consensus 72 ~rFtlAHELGH~llH~~~~~~~~~~~~~~~~~~~E~~AN~FAa~l 116 (213)
T COG2856 72 KRFTLAHELGHALLHTDLNTRFDAEPTLQQDRKIEAEANAFAAEL 116 (213)
T ss_pred HHHHHHHHHhHHHhccccchhhhcccccchhHHHHHHHHHHHHHH
Confidence 4568999999999975531 122233345688888888654
No 49
>PF13574 Reprolysin_2: Metallo-peptidase family M12B Reprolysin-like; PDB: 1KAP_P 1JIW_P 1AKL_A 1OM7_A 1OM8_A 1O0T_A 1OM6_A 1H71_P 1O0Q_A 1OMJ_A ....
Probab=43.42 E-value=16 Score=33.62 Aligned_cols=13 Identities=46% Similarity=0.527 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHH
Q 007232 301 VATVVAHELAHQW 313 (612)
Q Consensus 301 ~~~~iaHElaHqW 313 (612)
...++|||++||+
T Consensus 111 ~~~~~aHElGH~l 123 (173)
T PF13574_consen 111 GIDTFAHELGHQL 123 (173)
T ss_dssp HHHHHHHHHHHHH
T ss_pred eeeeehhhhHhhc
Confidence 4567999999998
No 50
>PRK04897 heat shock protein HtpX; Provisional
Probab=43.30 E-value=30 Score=35.04 Aligned_cols=68 Identities=21% Similarity=0.192 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhCCCcCCCCccEEEecCCCccchh---cccceeeecccccccCCCChHHHHHHHHHHHHHHHHHHHhcC
Q 007232 240 AVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAME---NYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGN 316 (612)
Q Consensus 240 ~~~~l~~~e~~fg~~yP~~k~d~V~~p~~~~~ame---~~gli~~~~~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGn 316 (612)
..+.++-+.+..|+ |.+++-++-.+....-+.. +-+.|.+... ++-. ....++..++|||++|-=-|+
T Consensus 82 L~~~v~~la~~~gi--p~p~v~v~~~~~~NAfa~G~~~~~~~v~vt~g-Ll~~------l~~~El~aVlAHElgHi~~~d 152 (298)
T PRK04897 82 LWHIVEDMAMVAQI--PMPRVFIIDDPSPNAFATGSSPKNAAVAVTTG-LLAI------MNREELEGVIGHEISHIRNYD 152 (298)
T ss_pred HHHHHHHHHHHcCC--CCCcEEEecCCCCceEEeccCCCCcEEEeehH-HHhh------CCHHHHHHHHHHHHHHHhcCC
Confidence 45666666777775 4567655433322111111 2234555543 2211 123468899999999965553
No 51
>PF04597 Ribophorin_I: Ribophorin I; InterPro: IPR007676 Ribophorin I is an essential subunit of oligosaccharyltransferase (OST), which is also known as dolichyl-diphosphooligosaccharide--protein glycosyltransferase, (2.4.1.119 from EC). OST catalyses the transfer of an oligosaccharide from dolichol pyrophosphate to selected asparagine residues of nascent polypeptides as they are translocated into the lumen of the rough endoplasmic reticulum. Ribophorin I and OST48 are thought to be responsible for OST catalytic activity []. Both yeast and mammalian proteins are glycosylated but the sites are not conserved. Glycosylation may contribute towards general solubility but is unlikely to be involved in a specific biochemical function []. Most family members are predicted to have a transmembrane helix at the C terminus of this region.; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0006486 protein glycosylation, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=43.26 E-value=2.6e+02 Score=29.99 Aligned_cols=86 Identities=16% Similarity=0.144 Sum_probs=44.5
Q ss_pred EecCCCCeEEEEEEEEEEEECC--cCEEEEEec-----CeeeeEEEeeeeccCCCccccceeEEEecCceEEEEEeCCcc
Q 007232 24 TPDLTSCKFGGSVAIDVDVVGD--TKFIVLNAA-----DLTINNRSVSFTNKVSSKALEPTKVELVEADEILVLEFAETL 96 (612)
Q Consensus 24 ~~d~~~~~f~G~v~I~~~~~~~--~~~i~L~~~-----~l~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~l~i~l~~~l 96 (612)
++|+.+....=++.|+++...+ .+...|-.. .+..-++...+.............+.-....+...|.|+.||
T Consensus 10 ~idl~~~~vk~~~~i~i~N~g~~p~~~y~~~l~~~~~~~ls~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~pl 89 (432)
T PF04597_consen 10 TIDLSKSYVKETIEITIKNIGDEPVSEYYFALPNDEADHLSYVSAKDKDKKKKLKVSKEITEVNSGSEIKYYEITLPKPL 89 (432)
T ss_pred EEEccCcEEEEEEEEEEEECCCCCceEEEEEECchhhccEEEEEEEECCCccccccccccccccCCCCcceEEEECCCCC
Confidence 4566666666666777775533 344444332 232233333221110000011112222223456999999999
Q ss_pred CCc-eEEEEEEEEe
Q 007232 97 PTG-MGVLAIGFEG 109 (612)
Q Consensus 97 ~~g-~~~l~i~y~g 109 (612)
+|| +.+|.++|.-
T Consensus 90 ~~~~~~~l~v~~~~ 103 (432)
T PF04597_consen 90 APGEKVTLTVEYVL 103 (432)
T ss_pred CCCCEEEEEEEEEe
Confidence 999 8888887754
No 52
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=42.92 E-value=66 Score=24.62 Aligned_cols=47 Identities=13% Similarity=0.127 Sum_probs=39.7
Q ss_pred hhHHHHHHHHhhCHHHHHHHHHHHHHHhccCCCCHHHHHHHHHhccCC
Q 007232 395 GASVIRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGE 442 (612)
Q Consensus 395 g~~vl~mL~~~lG~~~F~~~l~~yl~~~~~~~~~~~df~~~l~~~~~~ 442 (612)
=+.++.+|...++.+.+ ..|..++++++-+-++-++|.+.+....|-
T Consensus 11 F~~L~~~l~~~l~~~~~-~~l~~~Y~~~k~~kIsR~~fvr~lR~IVGD 57 (70)
T PF12174_consen 11 FPMLFSALSKHLPPSKM-DLLQKHYEEFKKKKISREEFVRKLRQIVGD 57 (70)
T ss_pred HHHHHHHHHHHCCHHHH-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 35789999999998885 567777788888899999999999998883
No 53
>PF08014 DUF1704: Domain of unknown function (DUF1704); InterPro: IPR012548 This family contains many hypothetical proteins.
Probab=41.42 E-value=1e+02 Score=31.94 Aligned_cols=85 Identities=20% Similarity=0.212 Sum_probs=48.4
Q ss_pred HHHHHHHHHHhCCCcCCCCccEEEecCCCccchhcccceeeecccccccCCCChHHHHHHHHHHHHHHHH-HH-------
Q 007232 241 VKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELA-HQ------- 312 (612)
Q Consensus 241 ~~~l~~~e~~fg~~yP~~k~d~V~~p~~~~~ame~~gli~~~~~~ll~~~~~~~~~~~~~~~~~iaHEla-Hq------- 312 (612)
..+-++..+|++ .. --++.+...++...+||-.-+-|.++.+.. ....++..++.||+. |.
T Consensus 116 ~~~~~~~~~y~~-~~-~~~~~V~~sddl~a~A~v~~~~l~I~~~~~---------fs~~~l~~L~~HEigvH~lt~~Ng~ 184 (349)
T PF08014_consen 116 SRLQERLKKYFG-KE-GFEVKVELSDDLLARAMVSGDRLKINKNAM---------FSERDLEALLHHEIGVHLLTTLNGR 184 (349)
T ss_pred HHHHHHHHHHhc-cc-CceEEEEEcCCcchhhcccCCeeEEcCCCC---------cCHHHHHHHHHHhhhhhhccccccc
Confidence 334445566666 22 224555555778778876655555555421 133458889999994 52
Q ss_pred -----HhcCccCccccchhHHhhhHHHHHHHHH
Q 007232 313 -----WFGNLVTMEWWTHLWLNEGFATWVSYLA 340 (612)
Q Consensus 313 -----WfGnlVt~~~w~d~WL~EGfA~y~~~~~ 340 (612)
|++...-+. .=..||+|.+.+++.
T Consensus 185 ~QPl~~l~~Glp~~----~~TQEGLAvl~E~l~ 213 (349)
T PF08014_consen 185 AQPLKILSLGLPGY----TPTQEGLAVLSEYLS 213 (349)
T ss_pred cCCcHHhCCCCCCC----CCCchHHHHHHHHHh
Confidence 222111111 123699999999764
No 54
>PRK03072 heat shock protein HtpX; Provisional
Probab=39.95 E-value=53 Score=32.99 Aligned_cols=69 Identities=19% Similarity=0.194 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHhCCCcCCCCccEEEecCCCccch---hcccceeeecccccccCCCChHHHHHHHHHHHHHHHHHHHhc
Q 007232 239 VAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAM---ENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFG 315 (612)
Q Consensus 239 ~~~~~l~~~e~~fg~~yP~~k~d~V~~p~~~~~am---e~~gli~~~~~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfG 315 (612)
...+.++-+.+..|+ |.+++-++-.+....-+. ..-+.+...+. ++-. ....++..++|||++|-=-|
T Consensus 71 ~L~~~v~~la~~~g~--p~p~vyv~~~~~~NAFa~G~~~~~~~v~vt~g-Ll~~------l~~~El~aVlAHElgHi~~~ 141 (288)
T PRK03072 71 AMYRIVRELSTAARQ--PMPRLYISPTAAPNAFATGRNPRNAAVCCTEG-ILQI------LNERELRGVLGHELSHVYNR 141 (288)
T ss_pred HHHHHHHHHHHHcCC--CCCCEEEecCCCCceEEecCCCCCcEEEecHH-HHHh------CCHHHHHHHHHHHHHHHhcC
Confidence 345666667777785 456765443332211111 11123443333 3311 12346889999999996655
Q ss_pred C
Q 007232 316 N 316 (612)
Q Consensus 316 n 316 (612)
+
T Consensus 142 d 142 (288)
T PRK03072 142 D 142 (288)
T ss_pred C
Confidence 3
No 55
>PRK02870 heat shock protein HtpX; Provisional
Probab=38.86 E-value=69 Score=32.95 Aligned_cols=64 Identities=25% Similarity=0.340 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhCCCcCCCCccEEEecCCCccchh---cccceeeecccccccCCCChHHHHHHHHHHHHHHHHHH
Q 007232 241 VKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAME---NYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQ 312 (612)
Q Consensus 241 ~~~l~~~e~~fg~~yP~~k~d~V~~p~~~~~ame---~~gli~~~~~~ll~~~~~~~~~~~~~~~~~iaHElaHq 312 (612)
.++++-+....|+|+ .+++-++-.+....-++. .-+.|.+.+. ++-. ....++..++|||++|-
T Consensus 118 ~~~ve~La~~ag~p~-~p~V~vi~~~~~NAFA~G~~~~~~~Ivvt~G-LL~~------L~~dEL~aVlAHELgHi 184 (336)
T PRK02870 118 YNVVEELLVAAGLRF-MPKVYIIDAPYMNAFASGYSEKSAMVAITTG-LLEK------LDRDELQAVMAHELSHI 184 (336)
T ss_pred HHHHHHHHHHcCCCC-CCeEEEEcCCCCceEEecCCCCCcEEEEehH-Hhhh------CCHHHHHHHHHHHHHHH
Confidence 344455555567542 345544332322222222 2345665555 3311 12346889999999996
No 56
>cd04279 ZnMc_MMP_like_1 Zinc-dependent metalloprotease; MMP_like sub-family 1. A group of bacterial, archaeal, and fungal metalloproteinase domains similar to matrix metalloproteinases and astacin.
Probab=38.77 E-value=1.2e+02 Score=27.07 Aligned_cols=37 Identities=14% Similarity=0.192 Sum_probs=24.4
Q ss_pred eEEEEEEeCCch---hhHHHHHHHHHHHHHHHHHHhCCCc
Q 007232 219 IKVRVYCQVGKA---NQGKFALNVAVKTLELYKEYFAVPY 255 (612)
Q Consensus 219 ~~v~v~~~~~~~---~~~~~~l~~~~~~l~~~e~~fg~~y 255 (612)
.++++|..+... .......+.+.+++...++..++.+
T Consensus 2 ~~i~~~i~~~~~~~~~~~~~~~~~v~~A~~~W~~~~~l~F 41 (156)
T cd04279 2 SPIRVYIDPTPAPPDSRAQSWLQAVKQAAAEWENVGPLKF 41 (156)
T ss_pred CCeEEEEcCCCCccccchHHHHHHHHHHHHHHHHhCCeEE
Confidence 467788777543 2344567778888888888765433
No 57
>PF14734 DUF4469: Domain of unknown function (DUF4469) with IG-like fold
Probab=36.52 E-value=1.6e+02 Score=24.44 Aligned_cols=27 Identities=19% Similarity=0.369 Sum_probs=20.9
Q ss_pred cCceEEEEEeCCccCCceEEEEEE--EEe
Q 007232 83 EADEILVLEFAETLPTGMGVLAIG--FEG 109 (612)
Q Consensus 83 ~~~~~l~i~l~~~l~~g~~~l~i~--y~g 109 (612)
.....|.+.+|..|..|+|.|.|. |.+
T Consensus 61 N~ps~l~~~lPa~L~~G~Y~l~V~Tq~~~ 89 (102)
T PF14734_consen 61 NKPSRLIFILPADLAAGEYTLEVRTQYSG 89 (102)
T ss_pred CCCcEEEEECcCccCceEEEEEEEEEecC
Confidence 344578889999999999988775 544
No 58
>PF14524 Wzt_C: Wzt C-terminal domain; PDB: 2R5O_B.
Probab=35.20 E-value=1.2e+02 Score=26.19 Aligned_cols=25 Identities=12% Similarity=0.255 Sum_probs=17.0
Q ss_pred cCceEEEEEeCCccCCceEEEEEEE
Q 007232 83 EADEILVLEFAETLPTGMGVLAIGF 107 (612)
Q Consensus 83 ~~~~~l~i~l~~~l~~g~~~l~i~y 107 (612)
.....+.++++.+|.+|.|.+.+..
T Consensus 83 ~g~~~~~~~i~~~L~~G~Y~i~v~l 107 (142)
T PF14524_consen 83 GGTYEVTFTIPKPLNPGEYSISVGL 107 (142)
T ss_dssp T-EEEEEEEEE--B-SEEEEEEEEE
T ss_pred CCEEEEEEEEcCccCCCeEEEEEEE
Confidence 4445677788888999999999988
No 59
>PRK10301 hypothetical protein; Provisional
Probab=34.96 E-value=2.5e+02 Score=24.16 Aligned_cols=25 Identities=16% Similarity=0.263 Sum_probs=19.5
Q ss_pred ceEEEEEeCCccCCceEEEEEEEEe
Q 007232 85 DEILVLEFAETLPTGMGVLAIGFEG 109 (612)
Q Consensus 85 ~~~l~i~l~~~l~~g~~~l~i~y~g 109 (612)
...+.+.++.+|++|.|+|+-+-.+
T Consensus 85 ~~~~~v~l~~~L~~G~YtV~Wrvvs 109 (124)
T PRK10301 85 QKQLIVPLADSLKPGTYTVDWHVVS 109 (124)
T ss_pred CcEEEEECCCCCCCccEEEEEEEEe
Confidence 4568888888999999988766554
No 60
>PRK01265 heat shock protein HtpX; Provisional
Probab=32.27 E-value=99 Score=31.62 Aligned_cols=67 Identities=21% Similarity=0.201 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHhCCCcCCCCccEEEecCCCccchh---cccceeeecccccccCCCChHHHHHHHHHHHHHHHHHHHhc
Q 007232 240 AVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAME---NYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFG 315 (612)
Q Consensus 240 ~~~~l~~~e~~fg~~yP~~k~d~V~~p~~~~~ame---~~gli~~~~~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfG 315 (612)
..+.++-+.+..|+ |.+++-++-.+....-+.. .-+-|.+.+. ++-. ....++..++|||++|-=-+
T Consensus 85 L~~~v~~la~~~g~--~~p~vyv~~~~~~NAfa~G~~~~~~~Ivvt~g-Ll~~------l~~~El~aVlAHElgHik~~ 154 (324)
T PRK01265 85 LYSIVAEVAKYNGI--RVPKVYIADVPFPNAFAYGSPIAGKRIAITLP-LLKI------LNRDEIKAVAGHELGHLKHR 154 (324)
T ss_pred HHHHHHHHHHHcCC--CCCeEEEecCCCCCeEEeccCCCCCEEEEehH-HHhh------CCHHHHHHHHHHHHHHHHcc
Confidence 34555566667775 4556544433321111111 1134444444 3211 13346889999999996444
No 61
>PRK02391 heat shock protein HtpX; Provisional
Probab=31.76 E-value=78 Score=31.95 Aligned_cols=68 Identities=19% Similarity=0.170 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHhCCCcCCCCccEEEecCCCccchh---cccceeeecccccccCCCChHHHHHHHHHHHHHHHHHHHhcC
Q 007232 240 AVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAME---NYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGN 316 (612)
Q Consensus 240 ~~~~l~~~e~~fg~~yP~~k~d~V~~p~~~~~ame---~~gli~~~~~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGn 316 (612)
..+.++.+.+..|+| .+++-++-.+....-+.. .-+.|.+.+. ++-. -...++..++|||++|---++
T Consensus 78 L~~~v~~la~~~~~~--~p~v~v~~~~~~NAfa~G~~~~~~~V~vt~g-Ll~~------L~~~El~aVlaHElgHi~~~d 148 (296)
T PRK02391 78 LHAMVERLCALADLP--KPRVAVADSDVPNAFATGRSPKNAVVCVTTG-LMRR------LDPDELEAVLAHELSHVKNRD 148 (296)
T ss_pred HHHHHHHHHHHcCCC--CCcEEEEeCCCCceEEecCCCCCcEEEecHH-HHhh------CCHHHHHHHHHHHHHHHHcCC
Confidence 445555666777764 456655443322211211 2234555443 3211 123458899999999977654
No 62
>KOG2661 consensus Peptidase family M48 [Posttranslational modification, protein turnover, chaperones]
Probab=30.24 E-value=1.5e+02 Score=29.94 Aligned_cols=18 Identities=39% Similarity=0.523 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHhcC
Q 007232 299 QRVATVVAHELAHQWFGN 316 (612)
Q Consensus 299 ~~~~~~iaHElaHqWfGn 316 (612)
..++.+++||+|||=-+.
T Consensus 273 dglAtvLgHE~aHaVarH 290 (424)
T KOG2661|consen 273 DGLATVLGHEIAHAVARH 290 (424)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 458899999999998764
No 63
>PF01421 Reprolysin: Reprolysin (M12B) family zinc metalloprotease This Prosite motif covers only the active site.; InterPro: IPR001590 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M12, subfamily M12B (adamalysin family, clan (MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. The adamalysins are zinc dependent endopeptidases found in snake venom. There are some mammalian proteins such as P78325 from SWISSPROT, and fertilin Q28472 from SWISSPROT. Fertilin and closely related proteins appear to not have some active site residues and may not be active enzymes. CD156 (also called ADAM8 (3.4.24 from EC) or MS2 human) has been implicated in extravasation of leukocytes. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2E3X_A 2W15_A 2W14_A 2W13_A 2W12_A 1ND1_A 3K7L_A 2DW2_A 2DW0_B 2DW1_A ....
Probab=29.99 E-value=59 Score=30.49 Aligned_cols=14 Identities=43% Similarity=0.717 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHH
Q 007232 299 QRVATVVAHELAHQ 312 (612)
Q Consensus 299 ~~~~~~iaHElaHq 312 (612)
...+.++|||++|.
T Consensus 129 ~~~a~~~AHelGH~ 142 (199)
T PF01421_consen 129 LSFAVIIAHELGHN 142 (199)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 34778999999995
No 64
>PF09768 Peptidase_M76: Peptidase M76 family; InterPro: IPR019165 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. Mitochondrial inner membrane protease ATP23 has two roles in the assembly of mitochondrial ATPase. Firstly, it acts as a protease that removes the N-terminal 10 residues of mitochondrial ATPase CF(0) subunit 6 (ATP6) at the intermembrane space side. Secondly, it is involved in the correct assembly of the membrane-embedded ATPase CF(0) particle, probably mediating association of ATP6 with the subunit 9 ring [, ].; GO: 0004222 metalloendopeptidase activity
Probab=29.46 E-value=2.2e+02 Score=26.19 Aligned_cols=25 Identities=20% Similarity=0.492 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHhcCccCccc
Q 007232 298 KQRVATVVAHELAHQWFGNLVTMEW 322 (612)
Q Consensus 298 ~~~~~~~iaHElaHqWfGnlVt~~~ 322 (612)
+..+..+++|||.|.|=--....+|
T Consensus 68 ~~~l~~~l~HELIHayD~cr~kvD~ 92 (173)
T PF09768_consen 68 QGHLEDTLTHELIHAYDHCRAKVDW 92 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCc
Confidence 3457889999999998433333443
No 65
>COG2719 SpoVR Uncharacterized conserved protein [Function unknown]
Probab=29.06 E-value=1.2e+02 Score=31.90 Aligned_cols=54 Identities=26% Similarity=0.318 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHhcCccCccccchhHHhhhHHHHHHHHHhhhcCCchhhHHHHHHHH
Q 007232 299 QRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDEC 358 (612)
Q Consensus 299 ~~~~~~iaHElaHqWfGnlVt~~~w~d~WL~EGfA~y~~~~~~~~~~~~~~~~~~~~~~~ 358 (612)
|+-.-.|..+.|.-.+...-| -=||||.|+|..+.++..++.+...-..++.+.
T Consensus 247 QReil~ivR~ea~YF~PQ~qT------kVMNEGWAtfWHytiln~lydE~~~~~~~~lEf 300 (495)
T COG2719 247 QREILRIVRKEAQYFYPQRQT------KVMNEGWATFWHYTILNHLYDEGKLTERAMLEF 300 (495)
T ss_pred HHHHHHHHHHHHHHhcchHHH------HHhhhhHHHHHHHHHHHhhhhhcccChHHHHHH
Confidence 333344555555433333222 248999999999999998877665544444443
No 66
>cd04272 ZnMc_salivary_gland_MPs Zinc-dependent metalloprotease, salivary_gland_MPs. Metalloproteases secreted by the salivary glands of arthropods.
Probab=28.66 E-value=87 Score=29.95 Aligned_cols=13 Identities=38% Similarity=0.432 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHH
Q 007232 301 VATVVAHELAHQW 313 (612)
Q Consensus 301 ~~~~iaHElaHqW 313 (612)
.+.++|||++|..
T Consensus 145 ~~~~~AHElGH~l 157 (220)
T cd04272 145 GVYTMTHELAHLL 157 (220)
T ss_pred cHHHHHHHHHHHh
Confidence 4689999999986
No 67
>PF09087 Cyc-maltodext_N: Cyclomaltodextrinase, N-terminal; InterPro: IPR015171 This domain is found at the N terminus of cyclomaltodextrinase. The domain assumes a beta-sandwich structure composed of the eight antiparallel beta-strands. A ten residue linker is also present at the C-terminal end, which connects the N-terminal domain to a distal domain in the protein. This domain participates in oligomerisation of the protein, wherein the N-terminal domain of one subunit contacts the active centre of the other subunit, and is also required for binding of cyclodextrin to substrate []. ; PDB: 3EDK_B 3EDD_A 3EDJ_B 3EDE_A 1H3G_B 3EDF_B.
Probab=28.56 E-value=1.7e+02 Score=23.56 Aligned_cols=52 Identities=12% Similarity=0.195 Sum_probs=21.4
Q ss_pred EEEEecCeeeeEEEeeeeccCCCccccceeEEEecCceEEEEEeC-CccCCceEEEEEE
Q 007232 49 IVLNAADLTINNRSVSFTNKVSSKALEPTKVELVEADEILVLEFA-ETLPTGMGVLAIG 106 (612)
Q Consensus 49 i~L~~~~l~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~l~i~l~-~~l~~g~~~l~i~ 106 (612)
|-+|+.++.=..|+++. ..+...++......++|.|.|. ...+||++.|.+.
T Consensus 18 LmvyG~nI~~~~v~i~~------~gV~i~~v~~~~npNYLFv~L~i~~akpg~~~i~~~ 70 (88)
T PF09087_consen 18 LMVYGKNIASAEVSISY------PGVTIKKVVKTDNPNYLFVYLDISDAKPGTFTINFK 70 (88)
T ss_dssp EEEESTTGGGSEEEE-B------TTEEEEEEEE-SSTTEEEEEEEE-T--SEEEEEEEE
T ss_pred EEEecCCcccCEEEEeC------CCeEEEEEEecCCCCEEEEEEecCCCCCcEEEEEEE
Confidence 44555554444444432 1223333333344455555443 1566665555443
No 68
>PF01431 Peptidase_M13: Peptidase family M13 This is family M13 in the peptidase classification. ; InterPro: IPR018497 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M13 (neprilysin family, clan MA(E)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. M13 peptidases are well-studied proteases found in a wide range of organisms including mammals and bacteria. In mammals they participate in processes such as cardiovascular development, blood-pressure regulation, nervous control of respiration, and regulation of the function of neuropeptides in the central nervous system. In bacteria they may be used for digestion of milk [, ]. The family includes eukaryotic and prokaryotic oligopeptidases, as well as some of the proteins responsible for the molecular basis of the blood group antigens e.g. Kell []. Neprilysin (3.4.24.11 from EC), is another member of this group, it is variously known as common acute lymphoblastic leukemia antigen (CALLA), enkephalinase (gp100) and neutral endopeptidase metalloendopeptidase (NEP). It is a plasma membrane-bound mammalian enzyme that is able to digest biologically-active peptides, including enkephalins []. The zinc ligands of neprilysin are known and are analogous to those in thermolysin, a related peptidase [, ]. Neprilysins, like thermolysin, are inhibited by phosphoramidon, which appears to selectively inhibit this family in mammals. The enzymes are all oligopeptidases, digesting oligo- and polypeptides, but not proteins []. Neprilysin consists of a short cytoplasmic domain, a membrane-spanning region and a large extracellular domain. The cytoplasmic domain contains a conformationally-restrained octapeptide, which is thought to act as a stop transfer sequence that prevents proteolysis and secretion [, ].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2QPJ_A 1R1I_A 1R1J_A 1Y8J_A 1R1H_A 1DMT_A 2YB9_A 3DWB_A 3ZUK_A.
Probab=28.31 E-value=43 Score=31.58 Aligned_cols=33 Identities=24% Similarity=0.354 Sum_probs=19.6
Q ss_pred cccCCCChHHHHHHHHHHHHHHHHHHHhcCccC
Q 007232 287 LYDDQHSAAANKQRVATVVAHELAHQWFGNLVT 319 (612)
Q Consensus 287 l~~~~~~~~~~~~~~~~~iaHElaHqWfGnlVt 319 (612)
+|++........-.+-.+|||||+|-.-...+.
T Consensus 22 ~f~~~~p~~~~yg~lG~ilahel~hafd~~g~~ 54 (206)
T PF01431_consen 22 FFDPNYPPALNYGGLGFILAHELMHAFDPEGIN 54 (206)
T ss_dssp T--TTS-HHHHHHTHHHHHHHHHHHCTSTTGGG
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHhh
Confidence 344444444555557789999999976443333
No 69
>PF13688 Reprolysin_5: Metallo-peptidase family M12; PDB: 2FV5_B 3EWJ_A 3KME_A 3L0T_B 1BKC_E 3G42_D 2I47_D 2FV9_B 3LEA_A 1ZXC_B ....
Probab=24.85 E-value=49 Score=30.89 Aligned_cols=15 Identities=33% Similarity=0.412 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHH
Q 007232 299 QRVATVVAHELAHQW 313 (612)
Q Consensus 299 ~~~~~~iaHElaHqW 313 (612)
.....++|||++|.+
T Consensus 140 ~~~~~~~AHEiGH~l 154 (196)
T PF13688_consen 140 YNGAITFAHEIGHNL 154 (196)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred CceehhhHHhHHHhc
Confidence 346789999999997
No 70
>PF13402 M60-like: Peptidase M60-like family; PDB: 4FCA_A.
Probab=23.50 E-value=1.4e+02 Score=30.02 Aligned_cols=107 Identities=13% Similarity=0.040 Sum_probs=54.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCcCC--------CCccEEEecCCCccchh-cccceeeecccccccCCCChHHHHHHHH
Q 007232 232 QGKFALNVAVKTLELYKEYFAVPYSL--------PKLDMIAIPDFAAGAME-NYGLVTYRETALLYDDQHSAAANKQRVA 302 (612)
Q Consensus 232 ~~~~~l~~~~~~l~~~e~~fg~~yP~--------~k~d~V~~p~~~~~ame-~~gli~~~~~~ll~~~~~~~~~~~~~~~ 302 (612)
+....++...++++...++.|.+.+. .+..+|.-.....|.|- ..+-|.+.... .+.-.. ......-.
T Consensus 144 d~~~ll~~~D~ii~~~~el~Gl~~~~~~~~~~~~~~~r~v~~v~~~~g~m~a~g~~i~~~~~~--~~~~l~-~~~~~~~~ 220 (307)
T PF13402_consen 144 DPEELLRFWDRIIDAEYELAGLDKSSPGPENNPMPNNRFVFDVQISAGYMHASGYPIGFPPNW--MNELLN-PNPLRKGG 220 (307)
T ss_dssp SSHHHHHHHHHHHHHHHHHTT-BSS--GGGB--S--EEEEEETT----SEEEETTEEEEETT----HHHH--HHHHHHH-
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCcccCCccccCcccceEEEeccccccceeecCCcEEeeCcH--HhcccC-HhHcCCCC
Confidence 34566777888999999999977742 22367776777666666 33334433220 000000 00111123
Q ss_pred HHHHHHHHHHHhcCccCccccchhHHhhhHHHHHHHHHhhhcCC
Q 007232 303 TVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFP 346 (612)
Q Consensus 303 ~~iaHElaHqWfGnlVt~~~w~d~WL~EGfA~y~~~~~~~~~~~ 346 (612)
--+.||+.|+-= ..+-.|.. +.|.-...++.+......+
T Consensus 221 WG~~HE~GH~~Q---~~~~~~~g--~~EvTnNi~sl~~~~~~~~ 259 (307)
T PF13402_consen 221 WGPWHELGHNHQ---QGPWTWSG--MGEVTNNIYSLYVQEKFGN 259 (307)
T ss_dssp HHHHHHHHHHH----BGGG--TT---TTTTHHHHHHHHHHHTT-
T ss_pred eeehhhhhhhcC---ccccccCC--CCchhhHHHHHHHHHHHhc
Confidence 479999999852 22112343 6788888888776666553
No 71
>PF09836 DUF2063: Uncharacterized protein conserved in bacteria (DUF2063); InterPro: IPR018640 This entry contains proteins that have no known function. ; PDB: 3DEE_A.
Probab=23.24 E-value=53 Score=26.59 Aligned_cols=30 Identities=23% Similarity=0.434 Sum_probs=21.6
Q ss_pred HHHhhCHHHHHHHHHHHHHHhccCCCCHHH
Q 007232 402 LQNYLGAECFQRSLASYIKKYACSNAKTED 431 (612)
Q Consensus 402 L~~~lG~~~F~~~l~~yl~~~~~~~~~~~d 431 (612)
++..||++.|....+.|+.++.-...+..+
T Consensus 55 ~~~llG~~~f~~la~~y~~~~p~~s~~l~~ 84 (94)
T PF09836_consen 55 VRALLGEEFFDALARAYIRAHPSRSPDLND 84 (94)
T ss_dssp GGGGS-HHHHHHHHHHHHHSGGGG-S-GGG
T ss_pred HHHHhCHHHHHHHHHHHHHhCCCCCCcHHH
Confidence 456789999999999999998766655433
No 72
>PRK15245 type III effector phosphothreonine lyase; Provisional
Probab=23.06 E-value=2.1e+02 Score=26.80 Aligned_cols=116 Identities=17% Similarity=0.252 Sum_probs=63.8
Q ss_pred ecCCCCCeeEE---EEEEEe-----CCCCeEeecCcccceeecCCeEEEEEecCCCcceeEEEEEEeeeeeeecccCCCe
Q 007232 148 CWDEPACKATF---KITLDV-----PSELVALSNMPVIDEKVDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGI 219 (612)
Q Consensus 148 c~Dep~~ka~f---~l~i~~-----p~~~~~isn~~~~~~~~~~~~~~~~f~~t~~~s~yl~a~~vg~f~~~~~~~~~~~ 219 (612)
|-++|..|..| ++.|.+ |..+.+++.......+.-+.|+++.-..-+ .......|.
T Consensus 90 ~R~~~q~kGefaGDK~HiSV~~~qv~qAF~als~lLfSeDSPiDKWKVTDM~rv~----------------qqsRV~~GA 153 (241)
T PRK15245 90 RRESPQSKGDFAGDKFHISVARDQVPQAFQALSGLLFSEDSPVDKWKVTDMERVS----------------QQSRVGLGA 153 (241)
T ss_pred cccCccccccccCceEEEEecHHHHHHHHHHhhhhhcCCCCCcceeeeccccccC----------------ccchhcccc
Confidence 44666666444 444444 455677765554443333334444322211 011234588
Q ss_pred EEEEEEeCCchh--hHHHHHHHHHHHHHHHHHHhCCCcCCCCccEEEecCCCccchhcccceeeecc
Q 007232 220 KVRVYCQVGKAN--QGKFALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRET 284 (612)
Q Consensus 220 ~v~v~~~~~~~~--~~~~~l~~~~~~l~~~e~~fg~~yP~~k~d~V~~p~~~~~ame~~gli~~~~~ 284 (612)
.+++|..|...+ .....+..+...++.+|..++- -- +.==..|.- .-.-|+|..+.||..
T Consensus 154 QfTLYvKpd~edsqYsa~~l~k~r~Fie~lE~~L~~-~g---i~pG~~P~S-DV~pe~W~y~SYRNE 215 (241)
T PRK15245 154 QFTLYVKPDQENSQYSASFLHKTRQFIECLESRLSE-NG---VISGQCPES-DVHPENWKYLSYRNE 215 (241)
T ss_pred eEEEEecCccccccCCHHHHHHHHHHHHHHHHHHHH-cC---CCCCCCCcc-ccCccccceeeehhh
Confidence 999999887653 2345577888889999888761 10 000001221 224489999999877
No 73
>KOG3607 consensus Meltrins, fertilins and related Zn-dependent metalloproteinases of the ADAMs family [Posttranslational modification, protein turnover, chaperones]
Probab=22.99 E-value=1.9e+02 Score=33.05 Aligned_cols=89 Identities=15% Similarity=0.142 Sum_probs=45.3
Q ss_pred EEEEEEeCCchhhHHHHHHHHHHHHHHHHHHhCCCcCCCCccEEEecCCC--ccchhcccc-ee--eecccccccCCCCh
Q 007232 220 KVRVYCQVGKANQGKFALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFA--AGAMENYGL-VT--YRETALLYDDQHSA 294 (612)
Q Consensus 220 ~v~v~~~~~~~~~~~~~l~~~~~~l~~~e~~fg~~yP~~k~d~V~~p~~~--~~ame~~gl-i~--~~~~~ll~~~~~~~ 294 (612)
.+.+|..++.....+.+.+.....+.+=..++...-|.+-..++..-.+. ..|+...|- -. ++.....+.++
T Consensus 242 ~lE~Wt~~dki~~~~~~~~tL~~F~~wr~~~l~~r~~hD~a~L~~~~~~~~~~~G~a~~~~mCs~~~s~gv~~~~~~--- 318 (716)
T KOG3607|consen 242 GLEIWTDGNKIDVSEDLRETLHNFLKWRKSYLTTRLPHDAAHLLSGILFYGKYVGLAYFGGMCSPGHSGGVNKFHSD--- 318 (716)
T ss_pred EEEecCCCCeecccccHHHHHHHHHHHHHhhccccCCCCceEEEEeeeccCceeceeecccccCcccccceeecCcc---
Confidence 35678887776666666666677777777766634455544444321221 122332221 11 11110111111
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 007232 295 AANKQRVATVVAHELAHQW 313 (612)
Q Consensus 295 ~~~~~~~~~~iaHElaHqW 313 (612)
.....+.++||||+|--
T Consensus 319 --~~~~~a~v~AhelgH~l 335 (716)
T KOG3607|consen 319 --ILLAFAVVLAHELGHNL 335 (716)
T ss_pred --cchhHHHHHHHHHHhhc
Confidence 12347889999999963
No 74
>PF15641 Tox-MPTase5: Metallopeptidase toxin 5
Probab=22.95 E-value=1.5e+02 Score=23.46 Aligned_cols=19 Identities=26% Similarity=0.686 Sum_probs=12.5
Q ss_pred HHHHHHHHH-HHHHHhcCcc
Q 007232 300 RVATVVAHE-LAHQWFGNLV 318 (612)
Q Consensus 300 ~~~~~iaHE-laHqWfGnlV 318 (612)
.+..+|.|| +-|-||...+
T Consensus 63 ~lr~~iiheelhhrw~~rgl 82 (109)
T PF15641_consen 63 ELRNTIIHEELHHRWWKRGL 82 (109)
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 355677776 7788886443
No 75
>KOG4680 consensus Uncharacterized conserved protein, contains ML domain [General function prediction only]
Probab=22.53 E-value=4.9e+02 Score=22.82 Aligned_cols=18 Identities=22% Similarity=0.207 Sum_probs=14.3
Q ss_pred EEEeCCccCCceEEEEEE
Q 007232 89 VLEFAETLPTGMGVLAIG 106 (612)
Q Consensus 89 ~i~l~~~l~~g~~~l~i~ 106 (612)
.+.||...+||+|.|.++
T Consensus 109 sq~LPg~tPPG~Y~lkm~ 126 (153)
T KOG4680|consen 109 SQVLPGYTPPGSYVLKMT 126 (153)
T ss_pred eEeccCcCCCceEEEEEE
Confidence 456777788999998876
No 76
>KOG2719 consensus Metalloprotease [General function prediction only]
Probab=22.24 E-value=1.1e+02 Score=32.33 Aligned_cols=15 Identities=40% Similarity=0.581 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHH
Q 007232 299 QRVATVVAHELAHQW 313 (612)
Q Consensus 299 ~~~~~~iaHElaHqW 313 (612)
.++..+++||++|-=
T Consensus 278 eel~AVl~HELGHW~ 292 (428)
T KOG2719|consen 278 EELVAVLAHELGHWK 292 (428)
T ss_pred HHHHHHHHHHhhHHH
Confidence 458899999999943
No 77
>PF08766 DEK_C: DEK C terminal domain; InterPro: IPR014876 DEK is a chromatin associated protein that is linked with cancers and autoimmune disease. This domain is found at the C-terminal of DEK and is of clinical importance since it can reverse the characteristic abnormal DNA-mutagen sensitivity in fibroblasts from ataxia-telangiectasia (A-T) patients []. The structure of this domain shows it to be homologous to the E2F/DP transcription factor family []. This domain is also found in chitin synthase proteins like Q8TF96 from SWISSPROT, and in protein phosphatases such as Q6NN85 from SWISSPROT. ; PDB: 1Q1V_A.
Probab=21.82 E-value=95 Score=22.19 Aligned_cols=38 Identities=13% Similarity=0.232 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHhccCCCCHHHHHHHHHhccCCCHH
Q 007232 408 AECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVN 445 (612)
Q Consensus 408 ~~~F~~~l~~yl~~~~~~~~~~~df~~~l~~~~~~~l~ 445 (612)
++..+..++.+++.--..+++..++...+++..|.++.
T Consensus 2 d~~i~~~i~~iL~~~dl~~vT~k~vr~~Le~~~~~dL~ 39 (54)
T PF08766_consen 2 DEEIREAIREILREADLDTVTKKQVREQLEERFGVDLS 39 (54)
T ss_dssp HHHHHHHHHHHHTTS-GGG--HHHHHHHHHHH-SS--S
T ss_pred HHHHHHHHHHHHHhCCHhHhhHHHHHHHHHHHHCCCcH
Confidence 46678899999999888889999999999999898865
No 78
>PF14891 Peptidase_M91: Effector protein
Probab=21.75 E-value=61 Score=29.80 Aligned_cols=15 Identities=33% Similarity=0.361 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHh
Q 007232 300 RVATVVAHELAHQWF 314 (612)
Q Consensus 300 ~~~~~iaHElaHqWf 314 (612)
.-..+++|||+|-|=
T Consensus 102 ~p~v~L~HEL~HA~~ 116 (174)
T PF14891_consen 102 PPFVVLYHELIHAYD 116 (174)
T ss_pred HHHHHHHHHHHHHHH
Confidence 356799999999985
Done!