BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007233
(612 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DSY|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc24201
pdb|4DSY|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc24201
pdb|4DSY|C Chain C, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc24201
pdb|4DSY|D Chain D, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc24201
pdb|4DT2|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc27209
pdb|4DT2|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc27209
pdb|4DT2|C Chain C, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc27209
pdb|4DT2|D Chain D, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc27209
pdb|4DHL|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Mo07123
pdb|4DHL|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Mo07123
pdb|4DHL|D Chain D, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Mo07123
pdb|4DHL|C Chain C, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Mo07123
Length = 426
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 76/276 (27%), Positives = 121/276 (43%), Gaps = 37/276 (13%)
Query: 238 GYIHTSFLKELWPNAMYTYKVGHRLFNSTYIWSSEYQFKASPYPGQNSLQRVVIFGDMGK 297
G+IH + +++L N Y Y+VG R N+T + F P G + + GD+G+
Sbjct: 79 GFIHHTTIRKLKYNTKYYYEVGLR--NTT----RRFSFITPPQTGLDVPYTFGLIGDLGQ 132
Query: 298 DEADGSNEYNDFQYASLNTTRQLIQDLKNIDIVFHIGDICYANGYIS----QWDQFTAQI 353
+ S T K V +GD+ YA+ Y + +WD +
Sbjct: 133 ------------SFDSNTTLSHYELSPKKGQTVLFVGDLSYADRYPNHDNVRWDTWGRFT 180
Query: 354 EPIASTVPYMIASGNHERDWPGTGSFYGNKDSGGECGVLAETMFYVPAE---NRAKFWYS 410
E + P++ +GNHE + + + + E ++VP E + + FWYS
Sbjct: 181 ERSVAYQPWIWTAGNHEIE-------FAPEINETEPFKPFSYRYHVPYEASQSTSPFWYS 233
Query: 411 TDYGMFRFCVADTEHDWREGTEQYKFIEHCLASVDRQKQPWLIFLAHRVLGYSSGIFYAV 470
V + + GT QY +++ L V R + PWLI L H L Y+S + +
Sbjct: 234 IKRASAHIIVLSSYSAYGRGTPQYTWLKKELRKVKRSETPWLIVLMHSPL-YNSYNHHFM 292
Query: 471 DGSFAEPMGRESLQKLWQKYKVDIAIYGHVHNYERT 506
+G E M R + + KYKVD+ GHVH YER+
Sbjct: 293 EG---EAM-RTKFEAWFVKYKVDVVFAGHVHAYERS 324
>pdb|2QFP|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Fluoride
pdb|2QFP|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Fluoride
pdb|2QFP|C Chain C, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Fluoride
pdb|2QFP|D Chain D, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Fluoride
pdb|2QFR|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase With Bound Sulfate
pdb|2QFR|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase With Bound Sulfate
Length = 424
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 76/276 (27%), Positives = 121/276 (43%), Gaps = 37/276 (13%)
Query: 238 GYIHTSFLKELWPNAMYTYKVGHRLFNSTYIWSSEYQFKASPYPGQNSLQRVVIFGDMGK 297
G+IH + +++L N Y Y+VG R N+T + F P G + + GD+G+
Sbjct: 77 GFIHHTTIRKLKYNTKYYYEVGLR--NTT----RRFSFITPPQTGLDVPYTFGLIGDLGQ 130
Query: 298 DEADGSNEYNDFQYASLNTTRQLIQDLKNIDIVFHIGDICYANGYIS----QWDQFTAQI 353
+ S T K V +GD+ YA+ Y + +WD +
Sbjct: 131 ------------SFDSNTTLSHYELSPKKGQTVLFVGDLSYADRYPNHDNVRWDTWGRFT 178
Query: 354 EPIASTVPYMIASGNHERDWPGTGSFYGNKDSGGECGVLAETMFYVPAE---NRAKFWYS 410
E + P++ +GNHE + + + + E ++VP E + + FWYS
Sbjct: 179 ERSVAYQPWIWTAGNHEIE-------FAPEINETEPFKPFSYRYHVPYEASQSTSPFWYS 231
Query: 411 TDYGMFRFCVADTEHDWREGTEQYKFIEHCLASVDRQKQPWLIFLAHRVLGYSSGIFYAV 470
V + + GT QY +++ L V R + PWLI L H L Y+S + +
Sbjct: 232 IKRASAHIIVLSSYSAYGRGTPQYTWLKKELRKVKRSETPWLIVLMHSPL-YNSYNHHFM 290
Query: 471 DGSFAEPMGRESLQKLWQKYKVDIAIYGHVHNYERT 506
+G E M R + + KYKVD+ GHVH YER+
Sbjct: 291 EG---EAM-RTKFEAWFVKYKVDVVFAGHVHAYERS 322
>pdb|1KBP|A Chain A, Kidney Bean Purple Acid Phosphatase
pdb|1KBP|B Chain B, Kidney Bean Purple Acid Phosphatase
pdb|1KBP|C Chain C, Kidney Bean Purple Acid Phosphatase
pdb|1KBP|D Chain D, Kidney Bean Purple Acid Phosphatase
pdb|3KBP|A Chain A, Kidney Bean Purple Acid Phosphatase
pdb|3KBP|B Chain B, Kidney Bean Purple Acid Phosphatase
pdb|3KBP|C Chain C, Kidney Bean Purple Acid Phosphatase
pdb|3KBP|D Chain D, Kidney Bean Purple Acid Phosphatase
pdb|4KBP|A Chain A, Kidney Bean Purple Acid Phosphatase
pdb|4KBP|B Chain B, Kidney Bean Purple Acid Phosphatase
pdb|4KBP|C Chain C, Kidney Bean Purple Acid Phosphatase
pdb|4KBP|D Chain D, Kidney Bean Purple Acid Phosphatase
Length = 432
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 76/276 (27%), Positives = 121/276 (43%), Gaps = 37/276 (13%)
Query: 238 GYIHTSFLKELWPNAMYTYKVGHRLFNSTYIWSSEYQFKASPYPGQNSLQRVVIFGDMGK 297
G+IH + +++L N Y Y+VG R N+T + F P G + + GD+G+
Sbjct: 85 GFIHHTTIRKLKYNTKYYYEVGLR--NTT----RRFSFITPPQTGLDVPYTFGLIGDLGQ 138
Query: 298 DEADGSNEYNDFQYASLNTTRQLIQDLKNIDIVFHIGDICYANGYIS----QWDQFTAQI 353
+ S T K V +GD+ YA+ Y + +WD +
Sbjct: 139 ------------SFDSNTTLSHYELSPKKGQTVLFVGDLSYADRYPNHDNVRWDTWGRFT 186
Query: 354 EPIASTVPYMIASGNHERDWPGTGSFYGNKDSGGECGVLAETMFYVPAE---NRAKFWYS 410
E + P++ +GNHE + + + + E ++VP E + + FWYS
Sbjct: 187 ERSVAYQPWIWTAGNHEIE-------FAPEINETEPFKPFSYRYHVPYEASQSTSPFWYS 239
Query: 411 TDYGMFRFCVADTEHDWREGTEQYKFIEHCLASVDRQKQPWLIFLAHRVLGYSSGIFYAV 470
V + + GT QY +++ L V R + PWLI L H L Y+S + +
Sbjct: 240 IKRASAHIIVLSSYSAYGRGTPQYTWLKKELRKVKRSETPWLIVLMHSPL-YNSYNHHFM 298
Query: 471 DGSFAEPMGRESLQKLWQKYKVDIAIYGHVHNYERT 506
+G E M R + + KYKVD+ GHVH YER+
Sbjct: 299 EG---EAM-RTKFEAWFVKYKVDVVFAGHVHAYERS 330
>pdb|1XZW|A Chain A, Sweet Potato Purple Acid PhosphatasePHOSPHATE COMPLEX
pdb|1XZW|B Chain B, Sweet Potato Purple Acid PhosphatasePHOSPHATE COMPLEX
Length = 426
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 98/429 (22%), Positives = 166/429 (38%), Gaps = 55/429 (12%)
Query: 167 NAPVYPRLAQGKTWNE-MTVTWTSGYGINEAEAFVQWGRKGGDRTHSPAGTLTFDRGSMC 225
NAP + QG + ++WT+ Y A W + + +T+ +
Sbjct: 23 NAPQQVHITQGDYEGRGVIISWTTPYDKAGANKVFYWSENSKSQKRAMGTVVTYKYYNYT 82
Query: 226 GAPARTVGWRDPGYIHTSFLKELWPNAMYTYKVGHRLFNSTYIWSSEYQFKASPYPGQNS 285
A +IH +K+L + Y Y++G F ++ F P PG +
Sbjct: 83 SA-----------FIHHCTIKDLEYDTKYYYRLG---FGDA---KRQFWFVTPPKPGPDV 125
Query: 286 LQRVVIFGDMGKDEADGSNEYNDFQYASLNTTRQLIQDLKNIDIVFHIGDICYANGYIS- 344
+ GD+G+ + S T Q+ V +GD+ Y+N + +
Sbjct: 126 PYVFGLIGDIGQ------------THDSNTTLTHYEQNSAKGQAVLFMGDLSYSNRWPNH 173
Query: 345 ---QWDQFTAQIEPIASTVPYMIASGNHERDW-PGTGSFYGNKDSGGECGVLAETMFYVP 400
+WD + E + P++ +GNHE D+ P G + + V + P
Sbjct: 174 DNNRWDTWGRFSERSVAYQPWIWTAGNHEIDYAPDIGEY--------QPFVPFTNRYPTP 225
Query: 401 AENRAK---FWYSTDYGMFRFCVADTEHDWREGTEQYKFIEHCLASVDRQKQPWLIFLAH 457
E WY+ V + + + + QYK+ L V+R + PWLI L H
Sbjct: 226 HEASGSGDPLWYAIKRASAHIIVLSSYSGFVKYSPQYKWFTSELEKVNRSETPWLIVLVH 285
Query: 458 RVLGYSSGIFYAVDGSFAEPMGRESLQKLWQKYKVDIAIYGHVHNYERT---CPIYQNIC 514
L Y+S + ++G E M R + + YKVDI GHVH+YER+ + NI
Sbjct: 286 APL-YNSYEAHYMEG---EAM-RAIFEPYFVYYKVDIVFSGHVHSYERSERVSNVAYNIV 340
Query: 515 TNKEKNYYKGTLNGTIHXXXXXXXXXLA-EFTPLQTTWSLYRDYDYGFVKLTAFDHSNLL 573
K + I LA E T Q ++S +R+ +G + ++
Sbjct: 341 NAKCTPVSDESAPVYITIGDGGNSEGLASEMTQPQPSYSAFREASFGHGIFDIKNRTHAH 400
Query: 574 FEYKKSSDG 582
F + ++ DG
Sbjct: 401 FSWHRNQDG 409
>pdb|1T47|A Chain A, Structure Of Fe2-Hppd Bound To Ntbc
pdb|1T47|B Chain B, Structure Of Fe2-Hppd Bound To Ntbc
Length = 381
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 8/92 (8%)
Query: 395 TMFYVPAENRAKFWYSTDYGMFRFCVADTEHDWREGTEQYKFI----EHCLASVDRQKQP 450
+F V +A +YST +GM + E+ RE T Y L SV + P
Sbjct: 26 VVFAVGNAKQAAHYYSTAFGMQLVAYSGPENGSRE-TASYVLTNGSARFVLTSVIKPATP 84
Query: 451 WLIFLAHRVLGYSSGIFYAVDGSFAEPMGRES 482
W FLA V + G+ VD + P R +
Sbjct: 85 WGHFLADHVAEHGDGV---VDLAIEVPDARAA 113
>pdb|3H6Z|A Chain A, Crystal Structure Of The Four Mbt Repeats Of Drosophila
Melanogaster Sfmbt In Complex With Peptide Rhr (Me)k Vlr
pdb|3H6Z|B Chain B, Crystal Structure Of The Four Mbt Repeats Of Drosophila
Melanogaster Sfmbt In Complex With Peptide Rhr (Me)k Vlr
Length = 447
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 38/97 (39%), Gaps = 2/97 (2%)
Query: 64 VTVEYSSPNPSVDDWIAVF--SPSNFSASTCSAENPSVNPPLLCSAPIKYQYANYSSPQY 121
+ ++ P+ S DW SP F A CS N SV PP + S
Sbjct: 301 IRIDSYQPDASGSDWFCYHEKSPCIFPAGFCSVNNISVTPPNGYDSRTFTWEGYLSDTGA 360
Query: 122 KGTGKGSLKLMLINQRSDFSVALFSGGLLKPKLVAVS 158
G+ ++ + + ++L L+ P+LV V+
Sbjct: 361 VAAGQHLFHDIIPDHGFEVGMSLECADLMDPRLVCVA 397
>pdb|2YEQ|A Chain A, Structure Of Phod
pdb|2YEQ|B Chain B, Structure Of Phod
Length = 527
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 42/103 (40%), Gaps = 25/103 (24%)
Query: 248 LWPNAMYTY--KVGHRLFNSTYIWSSEYQFKASPYPGQNSLQRVVIFGDMGKDEADGSNE 305
L PN +Y Y K GH L S + K P PG N Q F +
Sbjct: 82 LEPNKVYYYRFKTGHEL-------SPVGKTKTLPAPGANVPQMTFAFASCQQ-------- 126
Query: 306 YNDFQYASLNTTRQLIQDLKNIDIVFHIGDICYA---NGYISQ 345
+++ + + ++ +D+VFH+GD Y N Y+S+
Sbjct: 127 ---YEHGYYTAYKHMAKE--KLDLVFHLGDYIYEYGPNEYVSK 164
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,531,404
Number of Sequences: 62578
Number of extensions: 930374
Number of successful extensions: 1830
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1809
Number of HSP's gapped (non-prelim): 16
length of query: 612
length of database: 14,973,337
effective HSP length: 105
effective length of query: 507
effective length of database: 8,402,647
effective search space: 4260142029
effective search space used: 4260142029
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)