Query 007234
Match_columns 612
No_of_seqs 562 out of 3980
Neff 9.8
Searched_HMMs 46136
Date Thu Mar 28 20:47:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007234.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007234hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0291 WD40-repeat-containing 100.0 3.8E-53 8.2E-58 427.1 35.3 510 2-580 306-856 (893)
2 KOG0271 Notchless-like WD40 re 100.0 4.1E-46 8.9E-51 349.3 24.3 323 2-378 114-479 (480)
3 KOG0306 WD40-repeat-containing 100.0 1E-45 2.3E-50 373.2 26.7 468 2-598 372-867 (888)
4 KOG0272 U4/U6 small nuclear ri 100.0 2.2E-43 4.7E-48 335.4 22.0 281 3-378 175-458 (459)
5 KOG0271 Notchless-like WD40 re 100.0 1E-38 2.3E-43 299.6 22.4 292 39-382 107-441 (480)
6 KOG0286 G-protein beta subunit 100.0 2.2E-37 4.7E-42 281.6 30.1 281 3-378 55-343 (343)
7 KOG0319 WD40-repeat-containing 100.0 8.5E-38 1.8E-42 316.2 24.7 492 1-562 103-750 (775)
8 KOG0279 G protein beta subunit 100.0 7.3E-34 1.6E-38 257.2 29.5 287 2-379 14-312 (315)
9 KOG4547 WD40 repeat-containing 100.0 4.2E-34 9.1E-39 284.5 27.5 483 14-568 2-517 (541)
10 KOG0295 WD40 repeat-containing 100.0 1.7E-34 3.8E-39 270.0 21.7 280 3-379 108-405 (406)
11 KOG0315 G-protein beta subunit 100.0 2.1E-33 4.6E-38 250.0 26.6 272 18-381 11-289 (311)
12 KOG0318 WD40 repeat stress pro 100.0 3.6E-32 7.8E-37 265.5 36.8 362 3-381 59-561 (603)
13 KOG0272 U4/U6 small nuclear ri 100.0 9.4E-35 2E-39 276.7 17.4 238 2-280 216-458 (459)
14 KOG0284 Polyadenylation factor 100.0 2.2E-34 4.7E-39 273.0 15.5 281 4-379 97-379 (464)
15 KOG0279 G protein beta subunit 100.0 2.3E-32 4.9E-37 247.6 26.6 243 3-282 63-313 (315)
16 KOG0285 Pleiotropic regulator 100.0 1.2E-32 2.7E-37 256.7 23.3 284 5-379 153-438 (460)
17 KOG0263 Transcription initiati 100.0 7.9E-33 1.7E-37 283.4 22.9 238 9-285 382-652 (707)
18 KOG0266 WD40 repeat-containing 100.0 2.2E-31 4.8E-36 280.4 31.2 277 9-379 163-453 (456)
19 KOG0286 G-protein beta subunit 100.0 2.8E-31 6E-36 241.9 26.6 233 8-280 100-343 (343)
20 KOG0291 WD40-repeat-containing 100.0 8.9E-31 1.9E-35 265.6 32.9 326 3-381 145-509 (893)
21 cd00200 WD40 WD40 domain, foun 100.0 3E-30 6.5E-35 255.7 34.5 280 2-378 8-289 (289)
22 KOG0296 Angio-associated migra 100.0 1.2E-30 2.6E-35 244.6 27.8 326 2-379 63-397 (399)
23 KOG0265 U5 snRNP-specific prot 100.0 5.1E-31 1.1E-35 241.1 24.6 283 3-379 47-337 (338)
24 KOG0273 Beta-transducin family 100.0 1.3E-30 2.9E-35 251.5 27.8 336 2-379 177-522 (524)
25 KOG0315 G-protein beta subunit 100.0 1.2E-30 2.5E-35 232.6 25.3 249 3-293 40-299 (311)
26 KOG0263 Transcription initiati 100.0 2.3E-31 4.9E-36 272.7 22.8 201 2-233 450-652 (707)
27 KOG0293 WD40 repeat-containing 100.0 3.3E-31 7.1E-36 251.5 21.5 284 2-379 223-512 (519)
28 PLN00181 protein SPA1-RELATED; 100.0 1.2E-29 2.6E-34 287.0 38.3 304 3-379 483-792 (793)
29 KOG0316 Conserved WD40 repeat- 100.0 2.3E-30 4.9E-35 228.8 23.1 246 2-292 16-267 (307)
30 KOG0276 Vesicle coat complex C 100.0 3.7E-30 8.1E-35 255.9 25.2 247 2-289 12-264 (794)
31 KOG0275 Conserved WD40 repeat- 100.0 3.5E-31 7.7E-36 243.8 14.7 275 10-378 218-507 (508)
32 KOG0645 WD40 repeat protein [G 100.0 4.4E-29 9.6E-34 225.3 27.5 247 112-379 56-310 (312)
33 KOG0281 Beta-TrCP (transducin 100.0 3.9E-31 8.3E-36 245.7 12.5 277 3-381 197-478 (499)
34 KOG0318 WD40 repeat stress pro 100.0 1.1E-27 2.3E-32 234.3 34.1 323 3-379 190-601 (603)
35 KOG0310 Conserved WD40 repeat- 100.0 1.4E-28 3.1E-33 239.0 27.0 423 4-561 27-462 (487)
36 KOG0273 Beta-transducin family 100.0 9.2E-29 2E-33 238.9 25.3 248 3-293 235-493 (524)
37 KOG0282 mRNA splicing factor [ 100.0 7.8E-30 1.7E-34 247.3 17.8 285 2-378 213-503 (503)
38 KOG0295 WD40 repeat-containing 100.0 3.3E-29 7.2E-34 234.7 20.4 238 3-281 150-405 (406)
39 KOG1539 WD repeat protein [Gen 100.0 3.7E-27 7.9E-32 242.2 37.2 310 13-378 166-646 (910)
40 KOG0284 Polyadenylation factor 100.0 6.1E-30 1.3E-34 242.8 13.8 240 1-280 136-378 (464)
41 KOG0306 WD40-repeat-containing 100.0 2.7E-28 5.9E-33 247.5 25.9 322 5-379 67-579 (888)
42 KOG0319 WD40-repeat-containing 100.0 3.7E-28 8E-33 246.6 25.8 272 12-378 331-617 (775)
43 KOG0278 Serine/threonine kinas 100.0 5.1E-29 1.1E-33 222.1 15.7 279 2-380 13-297 (334)
44 KOG1446 Histone H3 (Lys4) meth 100.0 8.9E-27 1.9E-31 215.6 30.2 249 4-293 15-273 (311)
45 KOG0292 Vesicle coat complex C 100.0 3E-28 6.6E-33 250.8 22.5 252 3-293 9-291 (1202)
46 KOG0266 WD40 repeat-containing 100.0 1.8E-27 3.8E-32 250.8 28.0 238 3-281 203-453 (456)
47 KOG0285 Pleiotropic regulator 100.0 8.1E-28 1.7E-32 224.7 19.9 226 86-381 163-390 (460)
48 KOG0283 WD40 repeat-containing 100.0 1.6E-27 3.5E-32 246.6 23.4 259 2-285 266-579 (712)
49 KOG0643 Translation initiation 100.0 5.9E-27 1.3E-31 211.1 23.6 273 86-380 22-317 (327)
50 KOG0640 mRNA cleavage stimulat 100.0 1.4E-27 3.1E-32 219.0 17.1 303 2-379 111-425 (430)
51 KOG0281 Beta-TrCP (transducin 100.0 4.1E-28 8.9E-33 225.6 11.9 238 2-286 236-481 (499)
52 cd00200 WD40 WD40 domain, foun 100.0 1.2E-25 2.5E-30 222.8 30.5 232 10-280 56-289 (289)
53 PTZ00421 coronin; Provisional 100.0 1.5E-25 3.4E-30 235.1 32.6 260 5-288 22-296 (493)
54 KOG0296 Angio-associated migra 100.0 1.8E-26 3.8E-31 216.7 22.5 274 4-325 107-394 (399)
55 KOG0276 Vesicle coat complex C 99.9 1E-25 2.3E-30 224.4 28.0 236 3-278 55-295 (794)
56 KOG0313 Microtubule binding pr 99.9 2.8E-25 6E-30 209.6 26.9 272 17-379 115-417 (423)
57 KOG0292 Vesicle coat complex C 99.9 1.7E-26 3.7E-31 238.0 20.2 236 86-382 21-282 (1202)
58 KOG0274 Cdc4 and related F-box 99.9 1.6E-25 3.4E-30 235.2 27.0 235 9-290 212-449 (537)
59 KOG0289 mRNA splicing factor [ 99.9 1.9E-25 4.1E-30 213.9 24.8 275 12-378 226-504 (506)
60 KOG0316 Conserved WD40 repeat- 99.9 5.3E-26 1.2E-30 201.3 19.4 245 111-382 11-259 (307)
61 KOG0305 Anaphase promoting com 99.9 1.5E-25 3.2E-30 226.7 25.3 273 11-381 183-462 (484)
62 KOG1407 WD40 repeat protein [F 99.9 3.5E-25 7.6E-30 199.1 24.3 246 2-289 19-268 (313)
63 KOG0282 mRNA splicing factor [ 99.9 8.3E-27 1.8E-31 226.3 14.8 240 68-380 217-462 (503)
64 KOG0265 U5 snRNP-specific prot 99.9 2.7E-25 5.8E-30 203.7 23.4 237 2-279 89-335 (338)
65 PLN00181 protein SPA1-RELATED; 99.9 9.8E-25 2.1E-29 247.1 33.4 241 4-281 533-792 (793)
66 PTZ00420 coronin; Provisional 99.9 2.1E-24 4.5E-29 227.5 33.4 229 23-285 50-296 (568)
67 KOG0277 Peroxisomal targeting 99.9 2.2E-25 4.7E-30 199.7 21.8 281 10-378 13-307 (311)
68 KOG0645 WD40 repeat protein [G 99.9 1E-24 2.2E-29 197.2 25.4 240 2-282 60-311 (312)
69 KOG0288 WD40 repeat protein Ti 99.9 4.3E-26 9.4E-31 217.1 16.1 279 2-377 174-458 (459)
70 KOG0277 Peroxisomal targeting 99.9 3.1E-25 6.6E-30 198.7 18.2 235 11-281 66-308 (311)
71 KOG0275 Conserved WD40 repeat- 99.9 5.8E-26 1.2E-30 209.5 13.1 237 1-280 261-507 (508)
72 KOG0305 Anaphase promoting com 99.9 1.6E-24 3.5E-29 219.2 24.1 240 4-284 218-463 (484)
73 KOG0772 Uncharacterized conser 99.9 8E-25 1.7E-29 213.7 19.9 284 2-323 166-481 (641)
74 PTZ00421 coronin; Provisional 99.9 1.7E-23 3.6E-28 219.8 31.4 205 2-235 74-295 (493)
75 KOG2096 WD40 repeat protein [G 99.9 7.1E-24 1.5E-28 195.6 24.2 287 2-377 85-399 (420)
76 KOG0310 Conserved WD40 repeat- 99.9 2.2E-24 4.7E-29 210.0 21.7 230 10-279 73-306 (487)
77 KOG0308 Conserved WD40 repeat- 99.9 1.2E-24 2.5E-29 218.2 20.0 231 15-284 35-287 (735)
78 KOG0274 Cdc4 and related F-box 99.9 3.8E-24 8.2E-29 224.8 24.8 239 2-290 248-490 (537)
79 KOG0294 WD40 repeat-containing 99.9 6.3E-24 1.4E-28 196.0 22.8 242 2-285 42-284 (362)
80 KOG0278 Serine/threonine kinas 99.9 4.9E-25 1.1E-29 196.8 12.9 242 3-286 59-301 (334)
81 KOG1408 WD40 repeat protein [F 99.9 3.7E-24 7.9E-29 216.1 20.2 338 8-380 327-713 (1080)
82 KOG0973 Histone transcription 99.9 1.1E-23 2.4E-28 223.7 24.9 286 9-382 17-357 (942)
83 KOG0293 WD40 repeat-containing 99.9 4.3E-24 9.4E-29 203.3 19.2 242 2-283 268-514 (519)
84 KOG0643 Translation initiation 99.9 4.6E-23 9.9E-28 186.1 24.6 200 2-233 9-223 (327)
85 KOG0641 WD40 repeat protein [G 99.9 1.5E-22 3.3E-27 178.1 26.9 246 3-282 89-349 (350)
86 KOG0313 Microtubule binding pr 99.9 2.7E-23 5.9E-28 196.2 22.3 238 2-281 143-417 (423)
87 KOG0299 U3 snoRNP-associated p 99.9 1.2E-23 2.6E-28 203.4 19.8 299 4-379 143-455 (479)
88 KOG0973 Histone transcription 99.9 3.3E-23 7.2E-28 220.1 25.0 244 2-285 68-358 (942)
89 KOG0641 WD40 repeat protein [G 99.9 1.2E-22 2.7E-27 178.7 23.9 297 3-379 32-348 (350)
90 PTZ00420 coronin; Provisional 99.9 5E-22 1.1E-26 209.5 32.7 179 92-283 50-249 (568)
91 KOG0268 Sof1-like rRNA process 99.9 5.2E-24 1.1E-28 199.8 15.4 261 87-379 80-344 (433)
92 KOG0300 WD40 repeat-containing 99.9 6.8E-23 1.5E-27 188.8 21.1 276 12-379 155-475 (481)
93 KOG0283 WD40 repeat-containing 99.9 4.9E-23 1.1E-27 213.6 22.2 204 114-379 366-575 (712)
94 KOG0288 WD40 repeat protein Ti 99.9 2.4E-23 5.2E-28 198.5 17.8 233 4-279 220-458 (459)
95 KOG0647 mRNA export protein (c 99.9 4.6E-22 1E-26 182.7 25.5 246 4-287 28-286 (347)
96 KOG0646 WD40 repeat protein [G 99.9 2E-22 4.3E-27 195.3 23.2 281 22-382 12-309 (476)
97 KOG1446 Histone H3 (Lys4) meth 99.9 7.7E-22 1.7E-26 183.0 25.1 241 115-382 12-264 (311)
98 KOG0301 Phospholipase A2-activ 99.9 5.1E-22 1.1E-26 200.9 24.5 233 2-282 13-249 (745)
99 KOG0269 WD40 repeat-containing 99.9 6.8E-23 1.5E-27 209.5 18.4 241 11-282 45-296 (839)
100 KOG0294 WD40 repeat-containing 99.9 1.1E-21 2.3E-26 181.4 23.8 223 86-380 53-281 (362)
101 KOG1407 WD40 repeat protein [F 99.9 1.9E-21 4.1E-26 175.2 24.7 235 3-281 64-310 (313)
102 KOG0299 U3 snoRNP-associated p 99.9 3.4E-22 7.4E-27 193.3 21.2 236 4-279 203-453 (479)
103 KOG0640 mRNA cleavage stimulat 99.9 1.4E-22 3.1E-27 186.3 16.3 240 3-280 172-424 (430)
104 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.9E-20 4.1E-25 188.1 33.6 269 17-381 1-280 (300)
105 KOG1539 WD repeat protein [Gen 99.9 4.2E-21 9.2E-26 197.9 28.8 327 16-380 123-606 (910)
106 KOG4283 Transcription-coupled 99.9 5.5E-21 1.2E-25 174.9 26.0 297 2-379 42-364 (397)
107 KOG2106 Uncharacterized conser 99.9 5.6E-20 1.2E-24 179.6 33.9 344 9-379 250-625 (626)
108 KOG0289 mRNA splicing factor [ 99.9 2E-21 4.3E-26 186.5 22.5 241 3-281 261-505 (506)
109 KOG1274 WD40 repeat protein [G 99.9 3.7E-21 8.1E-26 200.5 25.5 235 10-283 18-263 (933)
110 KOG1273 WD40 repeat protein [G 99.9 3.9E-21 8.4E-26 177.4 22.6 247 8-290 26-288 (405)
111 KOG0264 Nucleosome remodeling 99.9 2.4E-21 5.1E-26 187.7 21.9 255 3-282 124-404 (422)
112 KOG1332 Vesicle coat complex C 99.9 1.2E-21 2.5E-26 174.9 18.2 234 14-280 20-284 (299)
113 KOG0650 WD40 repeat nucleolar 99.9 1.5E-21 3.3E-26 194.1 20.7 316 2-377 399-732 (733)
114 KOG1036 Mitotic spindle checkp 99.9 6.5E-21 1.4E-25 176.0 22.9 261 5-308 15-287 (323)
115 KOG0268 Sof1-like rRNA process 99.9 2.3E-22 4.9E-27 188.8 12.7 272 4-327 67-343 (433)
116 KOG0267 Microtubule severing p 99.9 7.6E-23 1.7E-27 207.5 9.0 232 2-274 27-260 (825)
117 KOG0639 Transducin-like enhanc 99.9 1.1E-21 2.5E-26 191.0 16.3 230 10-281 470-703 (705)
118 KOG0772 Uncharacterized conser 99.9 6.4E-21 1.4E-25 186.6 21.5 281 86-379 179-486 (641)
119 KOG2055 WD40 repeat protein [G 99.9 1.5E-20 3.3E-25 181.9 23.8 287 3-379 213-511 (514)
120 KOG0301 Phospholipase A2-activ 99.9 9.3E-21 2E-25 191.8 21.5 222 12-282 65-288 (745)
121 KOG1063 RNA polymerase II elon 99.9 1.6E-20 3.6E-25 189.9 23.2 333 8-381 148-649 (764)
122 KOG1408 WD40 repeat protein [F 99.9 3.3E-21 7.1E-26 194.9 17.7 242 5-283 461-714 (1080)
123 KOG2106 Uncharacterized conser 99.9 9.6E-20 2.1E-24 178.0 27.0 312 9-377 158-518 (626)
124 KOG0639 Transducin-like enhanc 99.9 6.4E-21 1.4E-25 185.8 17.8 275 9-379 423-703 (705)
125 KOG0267 Microtubule severing p 99.9 2.9E-22 6.3E-27 203.3 8.1 210 86-308 40-251 (825)
126 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 5.6E-19 1.2E-23 177.4 31.8 239 11-291 36-288 (300)
127 KOG0269 WD40 repeat-containing 99.9 3.8E-21 8.2E-26 196.8 15.1 237 12-283 94-341 (839)
128 KOG0264 Nucleosome remodeling 99.9 3.2E-20 6.9E-25 179.9 20.1 245 86-379 137-403 (422)
129 KOG2048 WD40 repeat protein [G 99.9 2.6E-19 5.6E-24 181.2 27.2 241 3-283 69-320 (691)
130 KOG0646 WD40 repeat protein [G 99.9 4.1E-20 8.9E-25 179.4 20.5 198 86-291 93-316 (476)
131 KOG0321 WD40 repeat-containing 99.9 5.6E-20 1.2E-24 184.5 21.0 291 5-383 49-394 (720)
132 KOG0300 WD40 repeat-containing 99.8 5E-20 1.1E-24 170.1 18.0 188 86-285 160-389 (481)
133 KOG0308 Conserved WD40 repeat- 99.8 3.1E-20 6.7E-25 186.7 17.6 234 12-283 80-328 (735)
134 KOG2048 WD40 repeat protein [G 99.8 2.1E-18 4.7E-23 174.6 30.2 242 2-284 24-277 (691)
135 KOG1063 RNA polymerase II elon 99.8 4.7E-19 1E-23 179.5 25.2 344 6-379 270-762 (764)
136 KOG0302 Ribosome Assembly prot 99.8 2.7E-19 5.8E-24 169.2 21.5 213 5-232 153-380 (440)
137 KOG2445 Nuclear pore complex c 99.8 7.8E-19 1.7E-23 162.0 23.6 240 10-282 18-318 (361)
138 KOG2919 Guanine nucleotide-bin 99.8 4.4E-19 9.5E-24 164.5 21.3 269 11-295 55-341 (406)
139 KOG0270 WD40 repeat-containing 99.8 3.5E-19 7.6E-24 171.9 20.5 253 17-288 192-455 (463)
140 KOG1332 Vesicle coat complex C 99.8 4.9E-19 1.1E-23 158.2 17.8 235 86-378 23-284 (299)
141 KOG1274 WD40 repeat protein [G 99.8 4E-18 8.7E-23 178.1 24.6 264 68-364 16-285 (933)
142 KOG1036 Mitotic spindle checkp 99.8 1E-17 2.3E-22 154.9 23.0 255 86-369 25-293 (323)
143 KOG1273 WD40 repeat protein [G 99.8 8.5E-19 1.8E-23 162.1 15.3 255 120-390 26-292 (405)
144 KOG0647 mRNA export protein (c 99.8 8.2E-18 1.8E-22 154.9 21.6 227 2-271 71-312 (347)
145 KOG4328 WD40 protein [Function 99.8 2.6E-18 5.5E-23 166.5 19.1 204 65-281 186-398 (498)
146 KOG4283 Transcription-coupled 99.8 5.6E-18 1.2E-22 155.3 17.9 195 86-286 56-280 (397)
147 KOG2445 Nuclear pore complex c 99.8 5.1E-17 1.1E-21 150.1 23.8 264 67-379 15-317 (361)
148 KOG4328 WD40 protein [Function 99.8 7.4E-18 1.6E-22 163.3 19.1 285 2-324 185-490 (498)
149 KOG1034 Transcriptional repres 99.8 1.1E-17 2.4E-22 155.7 18.8 296 4-379 39-382 (385)
150 KOG2055 WD40 repeat protein [G 99.8 1.1E-17 2.4E-22 162.3 19.5 245 3-282 257-512 (514)
151 KOG4378 Nuclear protein COP1 [ 99.8 2.9E-17 6.3E-22 160.3 22.0 287 27-361 12-305 (673)
152 KOG0307 Vesicle coat complex C 99.8 1.1E-18 2.5E-23 186.6 11.9 241 7-285 68-330 (1049)
153 KOG1034 Transcriptional repres 99.8 2.4E-17 5.3E-22 153.5 17.1 237 10-281 94-382 (385)
154 KOG2096 WD40 repeat protein [G 99.8 3.6E-17 7.8E-22 151.6 17.9 189 9-228 191-400 (420)
155 KOG0270 WD40 repeat-containing 99.8 9.2E-17 2E-21 155.4 20.9 208 67-284 175-406 (463)
156 KOG0321 WD40 repeat-containing 99.8 4.6E-17 9.9E-22 163.8 19.3 246 2-284 99-393 (720)
157 KOG0307 Vesicle coat complex C 99.8 4.4E-18 9.6E-23 182.2 12.9 245 65-327 64-325 (1049)
158 KOG1188 WD40 repeat protein [G 99.7 9.9E-17 2.1E-21 150.3 18.2 278 86-380 40-346 (376)
159 KOG4378 Nuclear protein COP1 [ 99.7 3.9E-17 8.5E-22 159.4 15.9 214 10-256 84-302 (673)
160 COG2319 FOG: WD40 repeat [Gene 99.7 1.2E-14 2.7E-19 152.1 35.6 323 3-380 65-400 (466)
161 COG2319 FOG: WD40 repeat [Gene 99.7 1.8E-14 3.9E-19 150.9 35.8 321 5-381 111-443 (466)
162 KOG1538 Uncharacterized conser 99.7 2.2E-16 4.8E-21 159.2 19.6 270 4-379 13-292 (1081)
163 KOG4227 WD40 repeat protein [G 99.7 7.7E-16 1.7E-20 146.3 21.8 305 3-379 56-386 (609)
164 KOG0303 Actin-binding protein 99.7 2.3E-16 5E-21 150.3 18.3 208 2-233 80-297 (472)
165 KOG1007 WD repeat protein TSSC 99.7 1.6E-15 3.4E-20 139.1 21.4 259 86-379 76-360 (370)
166 KOG1009 Chromatin assembly com 99.7 1.6E-15 3.5E-20 145.3 21.5 157 3-188 13-196 (434)
167 PRK11028 6-phosphogluconolacto 99.7 1.1E-14 2.4E-19 148.3 29.2 225 21-283 6-259 (330)
168 KOG0303 Actin-binding protein 99.7 1.4E-15 3E-20 145.0 20.4 207 60-285 77-297 (472)
169 KOG0642 Cell-cycle nuclear pro 99.7 1.6E-16 3.6E-21 158.0 14.2 243 4-287 295-566 (577)
170 KOG1524 WD40 repeat-containing 99.7 7.2E-16 1.6E-20 152.1 18.3 231 10-277 19-250 (737)
171 KOG1188 WD40 repeat protein [G 99.7 7.9E-16 1.7E-20 144.3 16.3 190 18-233 41-245 (376)
172 KOG2110 Uncharacterized conser 99.7 2.8E-14 6E-19 135.5 26.5 232 11-285 11-251 (391)
173 KOG0302 Ribosome Assembly prot 99.7 1.4E-15 3.1E-20 144.2 17.4 190 86-283 165-379 (440)
174 KOG0290 Conserved WD40 repeat- 99.7 2.5E-15 5.4E-20 137.9 18.3 208 4-233 97-321 (364)
175 KOG0650 WD40 repeat nucleolar 99.7 2.2E-15 4.8E-20 150.6 19.0 223 86-378 412-678 (733)
176 KOG1240 Protein kinase contain 99.7 1.1E-14 2.5E-19 156.6 24.7 255 2-287 1047-1339(1431)
177 KOG0642 Cell-cycle nuclear pro 99.7 3.8E-16 8.2E-21 155.5 11.5 248 114-383 291-564 (577)
178 KOG1587 Cytoplasmic dynein int 99.7 1.1E-14 2.4E-19 152.4 22.7 251 3-284 242-518 (555)
179 KOG0649 WD40 repeat protein [G 99.7 2.8E-14 6.1E-19 127.8 21.6 226 10-282 15-274 (325)
180 KOG0771 Prolactin regulatory e 99.7 2.1E-15 4.6E-20 145.6 15.0 193 10-231 149-355 (398)
181 PRK11028 6-phosphogluconolacto 99.6 1.1E-13 2.5E-18 141.0 28.5 236 10-282 39-304 (330)
182 KOG1445 Tumor-specific antigen 99.6 2.5E-15 5.3E-20 150.9 15.1 239 13-282 587-844 (1012)
183 KOG1007 WD repeat protein TSSC 99.6 1.1E-14 2.5E-19 133.5 18.1 199 10-230 128-361 (370)
184 KOG2919 Guanine nucleotide-bin 99.6 6E-15 1.3E-19 137.3 16.5 225 14-272 120-360 (406)
185 KOG1963 WD40 repeat protein [G 99.6 1.3E-13 2.9E-18 144.5 26.6 270 10-289 21-382 (792)
186 KOG1963 WD40 repeat protein [G 99.6 3.1E-13 6.6E-18 141.8 28.0 292 9-381 209-539 (792)
187 KOG2110 Uncharacterized conser 99.6 1.3E-12 2.8E-17 124.3 29.1 144 87-232 98-250 (391)
188 KOG0322 G-protein beta subunit 99.6 6E-15 1.3E-19 133.7 12.8 279 2-379 13-322 (323)
189 KOG1009 Chromatin assembly com 99.6 9.7E-14 2.1E-18 133.2 21.2 244 2-286 64-376 (434)
190 KOG0644 Uncharacterized conser 99.6 3.1E-15 6.8E-20 154.7 11.6 242 3-288 190-474 (1113)
191 KOG1445 Tumor-specific antigen 99.6 6.7E-15 1.5E-19 147.8 13.3 181 91-284 598-800 (1012)
192 KOG1517 Guanine nucleotide bin 99.6 3.8E-13 8.2E-18 142.9 25.1 288 12-381 1071-1382(1387)
193 KOG0649 WD40 repeat protein [G 99.6 4.8E-13 1E-17 120.0 21.8 204 2-232 61-276 (325)
194 KOG1272 WD40-repeat-containing 99.6 6E-15 1.3E-19 143.5 10.4 225 10-280 134-360 (545)
195 KOG2394 WD40 protein DMR-N9 [G 99.6 7.9E-14 1.7E-18 138.2 15.3 171 15-208 183-383 (636)
196 KOG2111 Uncharacterized conser 99.6 6.2E-12 1.4E-16 117.5 26.9 236 8-285 8-259 (346)
197 PRK01742 tolB translocation pr 99.5 7.4E-13 1.6E-17 139.4 23.3 215 26-289 183-410 (429)
198 KOG0322 G-protein beta subunit 99.5 1.7E-13 3.8E-18 124.3 15.3 143 86-229 165-322 (323)
199 KOG0771 Prolactin regulatory e 99.5 8.9E-14 1.9E-18 134.5 14.2 199 121-379 148-353 (398)
200 PRK01742 tolB translocation pr 99.5 4.4E-13 9.4E-18 141.2 20.7 189 4-230 204-401 (429)
201 KOG2139 WD40 repeat protein [G 99.5 2.8E-12 6.1E-17 121.5 22.3 196 4-231 99-310 (445)
202 KOG2394 WD40 protein DMR-N9 [G 99.5 1.2E-12 2.6E-17 129.9 20.2 196 86-287 185-457 (636)
203 KOG1524 WD40 repeat-containing 99.5 1.8E-13 3.9E-18 135.4 14.2 178 3-226 104-282 (737)
204 KOG1587 Cytoplasmic dynein int 99.5 3.4E-12 7.4E-17 133.8 24.5 244 65-380 242-516 (555)
205 PF02239 Cytochrom_D1: Cytochr 99.5 8.7E-12 1.9E-16 127.2 26.7 316 18-378 6-345 (369)
206 KOG1517 Guanine nucleotide bin 99.5 1.2E-12 2.5E-17 139.2 20.4 254 4-284 1110-1383(1387)
207 KOG1538 Uncharacterized conser 99.5 4.8E-13 1E-17 135.4 16.7 231 3-282 53-293 (1081)
208 KOG2321 WD40 repeat protein [G 99.5 3.3E-12 7.1E-17 127.7 21.9 183 86-282 145-343 (703)
209 PF04003 Utp12: Dip2/Utp12 Fam 99.5 2.4E-14 5.1E-19 120.0 5.7 82 484-565 8-91 (110)
210 PF08662 eIF2A: Eukaryotic tra 99.5 4.4E-12 9.5E-17 117.6 20.2 132 96-232 37-181 (194)
211 KOG1334 WD40 repeat protein [G 99.5 1E-12 2.2E-17 128.9 16.4 290 2-327 141-464 (559)
212 KOG4497 Uncharacterized conser 99.5 1.8E-13 4E-18 127.8 9.9 226 10-286 13-244 (447)
213 KOG3881 Uncharacterized conser 99.5 4.4E-12 9.6E-17 121.5 19.5 149 86-235 161-325 (412)
214 KOG0644 Uncharacterized conser 99.5 4.5E-14 9.7E-19 146.3 6.3 240 114-382 187-428 (1113)
215 KOG2111 Uncharacterized conser 99.5 1.2E-10 2.6E-15 109.0 27.3 175 27-233 75-259 (346)
216 PF02239 Cytochrom_D1: Cytochr 99.4 6.2E-11 1.3E-15 121.0 26.3 193 86-289 5-209 (369)
217 KOG1523 Actin-related protein 99.4 5.1E-12 1.1E-16 118.1 16.3 200 3-233 10-239 (361)
218 PRK05137 tolB translocation pr 99.4 7.8E-11 1.7E-15 124.5 27.4 215 27-285 182-415 (435)
219 KOG1523 Actin-related protein 99.4 8.3E-12 1.8E-16 116.6 17.3 206 65-285 10-239 (361)
220 PRK03629 tolB translocation pr 99.4 4.5E-11 9.7E-16 125.6 25.1 191 9-233 202-409 (429)
221 PRK03629 tolB translocation pr 99.4 5.2E-11 1.1E-15 125.2 25.2 233 97-359 180-427 (429)
222 PRK04922 tolB translocation pr 99.4 7E-11 1.5E-15 124.7 25.9 214 27-284 184-413 (433)
223 KOG0290 Conserved WD40 repeat- 99.4 4.1E-11 8.8E-16 110.6 19.9 205 66-284 97-320 (364)
224 KOG2139 WD40 repeat protein [G 99.4 1.1E-10 2.4E-15 110.9 22.9 255 3-281 140-430 (445)
225 KOG3881 Uncharacterized conser 99.4 4.2E-11 9.2E-16 114.9 20.1 190 86-287 115-325 (412)
226 PRK02889 tolB translocation pr 99.4 7.7E-11 1.7E-15 124.0 24.3 201 97-319 177-390 (427)
227 PF10282 Lactonase: Lactonase, 99.4 2.1E-09 4.6E-14 109.8 33.7 241 11-286 42-328 (345)
228 KOG4227 WD40 repeat protein [G 99.4 4.1E-11 8.8E-16 114.5 19.3 163 114-284 53-227 (609)
229 PRK02889 tolB translocation pr 99.4 1.1E-10 2.3E-15 122.9 24.7 211 27-281 176-402 (427)
230 PRK05137 tolB translocation pr 99.4 1E-10 2.2E-15 123.6 24.5 195 4-233 202-415 (435)
231 PRK04922 tolB translocation pr 99.4 5.2E-11 1.1E-15 125.7 22.2 176 97-287 185-373 (433)
232 PF08662 eIF2A: Eukaryotic tra 99.4 6.7E-11 1.4E-15 109.7 20.1 152 121-288 9-184 (194)
233 KOG1310 WD40 repeat protein [G 99.4 9.7E-12 2.1E-16 123.6 13.6 207 2-235 49-308 (758)
234 KOG1310 WD40 repeat protein [G 99.3 1.1E-11 2.4E-16 123.3 13.2 196 86-287 62-308 (758)
235 KOG1354 Serine/threonine prote 99.3 5.9E-11 1.3E-15 111.9 17.2 251 10-285 30-362 (433)
236 KOG1240 Protein kinase contain 99.3 1.5E-10 3.3E-15 125.4 21.8 193 86-286 1061-1277(1431)
237 PF10282 Lactonase: Lactonase, 99.3 6.8E-09 1.5E-13 106.1 31.4 277 89-380 2-322 (345)
238 KOG1334 WD40 repeat protein [G 99.3 1.4E-11 3.1E-16 121.1 10.2 275 86-379 154-465 (559)
239 TIGR02800 propeller_TolB tol-p 99.3 3E-09 6.6E-14 112.3 27.5 178 86-280 201-395 (417)
240 PRK01029 tolB translocation pr 99.2 5.1E-09 1.1E-13 109.7 27.4 184 90-286 203-407 (428)
241 KOG4497 Uncharacterized conser 99.2 8.9E-11 1.9E-15 110.1 11.1 218 122-378 13-238 (447)
242 KOG1272 WD40-repeat-containing 99.2 2.1E-11 4.5E-16 119.2 7.0 191 85-291 140-332 (545)
243 PRK04792 tolB translocation pr 99.2 4.3E-09 9.4E-14 111.2 24.7 190 10-232 222-427 (448)
244 TIGR02800 propeller_TolB tol-p 99.2 3.9E-09 8.4E-14 111.5 24.5 175 97-286 171-358 (417)
245 PRK00178 tolB translocation pr 99.2 1.2E-08 2.5E-13 108.1 27.5 181 86-282 210-406 (430)
246 PRK00178 tolB translocation pr 99.2 5.8E-09 1.3E-13 110.4 25.1 174 98-286 181-367 (430)
247 KOG0974 WD-repeat protein WDR6 99.2 6.3E-10 1.4E-14 119.3 17.0 191 13-231 95-289 (967)
248 COG2706 3-carboxymuconate cycl 99.2 5.5E-08 1.2E-12 93.5 28.3 244 11-286 45-327 (346)
249 COG2706 3-carboxymuconate cycl 99.2 5.7E-08 1.2E-12 93.4 28.4 275 89-381 5-322 (346)
250 PRK04792 tolB translocation pr 99.2 1.3E-08 2.9E-13 107.5 26.8 181 86-282 229-425 (448)
251 PRK01029 tolB translocation pr 99.2 7E-09 1.5E-13 108.7 23.4 197 9-234 188-407 (428)
252 KOG0280 Uncharacterized conser 99.2 1.1E-09 2.5E-14 101.4 15.1 198 8-232 124-335 (339)
253 KOG2315 Predicted translation 99.1 5.8E-09 1.3E-13 104.9 21.0 129 140-284 252-392 (566)
254 KOG0309 Conserved WD40 repeat- 99.1 2.4E-10 5.2E-15 117.6 11.1 202 4-233 25-235 (1081)
255 TIGR02658 TTQ_MADH_Hv methylam 99.1 8.9E-08 1.9E-12 95.7 29.1 266 96-379 27-329 (352)
256 KOG2321 WD40 repeat protein [G 99.1 1.4E-09 3.1E-14 109.2 15.4 190 12-231 140-344 (703)
257 KOG1409 Uncharacterized conser 99.1 1.3E-08 2.8E-13 96.5 20.4 232 13-284 32-272 (404)
258 TIGR03300 assembly_YfgL outer 99.1 7.5E-08 1.6E-12 100.1 28.6 224 16-290 64-305 (377)
259 PLN02919 haloacid dehalogenase 99.1 9.3E-08 2E-12 110.4 31.7 250 11-286 573-892 (1057)
260 COG5354 Uncharacterized protei 99.1 2.9E-08 6.3E-13 98.8 23.4 305 5-371 73-420 (561)
261 KOG0974 WD-repeat protein WDR6 99.1 3E-09 6.5E-14 114.2 16.8 183 86-283 99-289 (967)
262 COG5354 Uncharacterized protei 99.1 1.7E-07 3.7E-12 93.5 27.5 331 5-381 34-396 (561)
263 TIGR02658 TTQ_MADH_Hv methylam 99.1 1.9E-07 4.1E-12 93.4 28.1 244 12-290 52-338 (352)
264 KOG1064 RAVE (regulator of V-A 99.1 1.1E-09 2.4E-14 122.7 12.5 182 10-235 2213-2403(2439)
265 COG4946 Uncharacterized protei 99.0 1.8E-07 4E-12 92.3 25.8 173 13-218 327-507 (668)
266 KOG2315 Predicted translation 99.0 3.3E-08 7.2E-13 99.6 20.8 198 3-232 165-392 (566)
267 KOG4547 WD40 repeat-containing 99.0 5.2E-08 1.1E-12 98.9 21.7 190 86-283 5-221 (541)
268 TIGR03300 assembly_YfgL outer 99.0 1.1E-07 2.4E-12 98.8 23.9 226 16-291 104-347 (377)
269 KOG2314 Translation initiation 99.0 1.9E-07 4.2E-12 93.9 23.3 305 10-369 215-556 (698)
270 KOG1064 RAVE (regulator of V-A 99.0 4.5E-09 9.8E-14 118.1 12.9 180 86-291 2220-2407(2439)
271 KOG0280 Uncharacterized conser 99.0 8.2E-08 1.8E-12 89.3 18.8 199 68-284 124-335 (339)
272 PF13360 PQQ_2: PQQ-like domai 99.0 1E-06 2.2E-11 85.1 28.0 218 26-288 2-236 (238)
273 PF04762 IKI3: IKI3 family; I 98.9 1.5E-06 3.3E-11 98.7 30.3 235 9-281 79-378 (928)
274 KOG1409 Uncharacterized conser 98.9 6.7E-08 1.5E-12 91.7 16.1 196 3-232 68-272 (404)
275 PF08450 SGL: SMP-30/Gluconola 98.9 9.1E-06 2E-10 79.0 32.0 189 86-288 12-218 (246)
276 COG5170 CDC55 Serine/threonine 98.8 9.2E-08 2E-12 89.5 14.6 246 10-280 31-365 (460)
277 KOG2314 Translation initiation 98.8 1.4E-06 3.1E-11 87.8 23.8 277 6-324 252-562 (698)
278 KOG4190 Uncharacterized conser 98.8 1.3E-08 2.9E-13 101.7 9.3 233 3-280 735-986 (1034)
279 KOG1912 WD40 repeat protein [G 98.8 3.8E-07 8.2E-12 95.2 20.0 245 10-282 20-304 (1062)
280 PF15492 Nbas_N: Neuroblastoma 98.8 1.7E-06 3.7E-11 81.0 22.5 197 12-235 50-264 (282)
281 PF08450 SGL: SMP-30/Gluconola 98.8 1E-05 2.2E-10 78.7 29.5 217 11-271 5-244 (246)
282 COG4946 Uncharacterized protei 98.8 4.3E-06 9.4E-11 82.8 26.1 143 86-234 332-481 (668)
283 KOG4190 Uncharacterized conser 98.8 1.1E-08 2.4E-13 102.2 8.3 175 114-293 732-917 (1034)
284 PRK04043 tolB translocation pr 98.8 1E-06 2.2E-11 91.9 23.4 189 9-232 191-402 (419)
285 KOG4532 WD40-like repeat conta 98.8 1.2E-06 2.6E-11 80.7 20.6 197 86-288 84-288 (344)
286 KOG1354 Serine/threonine prote 98.8 1.1E-07 2.4E-12 90.2 14.2 246 86-379 37-358 (433)
287 PLN02919 haloacid dehalogenase 98.8 1.9E-06 4.1E-11 99.7 26.8 212 10-234 628-892 (1057)
288 KOG3914 WD repeat protein WDR4 98.8 6.5E-08 1.4E-12 93.9 12.3 159 11-196 68-232 (390)
289 KOG2041 WD40 repeat protein [G 98.8 9.2E-07 2E-11 91.5 20.8 243 5-273 14-279 (1189)
290 PRK04043 tolB translocation pr 98.7 1.2E-05 2.6E-10 83.9 28.6 181 86-284 199-402 (419)
291 PF07433 DUF1513: Protein of u 98.7 2E-05 4.3E-10 76.3 27.5 198 10-235 9-252 (305)
292 PRK11138 outer membrane biogen 98.7 2E-06 4.3E-11 89.9 22.3 226 17-290 120-361 (394)
293 KOG1832 HIV-1 Vpr-binding prot 98.7 1.3E-08 2.9E-13 107.0 5.1 192 66-293 1102-1302(1516)
294 PF13360 PQQ_2: PQQ-like domai 98.7 1E-05 2.2E-10 78.2 25.0 188 13-234 32-234 (238)
295 PRK11138 outer membrane biogen 98.7 7.5E-06 1.6E-10 85.5 25.4 237 16-290 68-320 (394)
296 KOG4532 WD40-like repeat conta 98.7 5.6E-06 1.2E-10 76.4 20.3 188 18-235 85-287 (344)
297 KOG3914 WD repeat protein WDR4 98.6 5.5E-07 1.2E-11 87.6 13.0 162 119-293 64-234 (390)
298 KOG4714 Nucleoporin [Nuclear s 98.6 3.5E-07 7.6E-12 83.8 10.7 144 86-231 101-255 (319)
299 PF07433 DUF1513: Protein of u 98.5 5.6E-05 1.2E-09 73.2 24.2 193 86-290 17-255 (305)
300 KOG4714 Nucleoporin [Nuclear s 98.5 1.6E-06 3.5E-11 79.5 12.4 189 87-283 48-255 (319)
301 KOG1912 WD40 repeat protein [G 98.5 1.9E-05 4E-10 83.0 20.5 203 2-231 54-305 (1062)
302 PF04192 Utp21: Utp21 specific 98.5 6.2E-07 1.3E-11 84.7 8.7 94 471-565 109-220 (237)
303 KOG2114 Vacuolar assembly/sort 98.4 6.8E-05 1.5E-09 80.0 24.2 194 11-233 29-246 (933)
304 PF04762 IKI3: IKI3 family; I 98.4 6.4E-05 1.4E-09 85.7 25.9 187 86-284 87-335 (928)
305 KOG4649 PQQ (pyrrolo-quinoline 98.4 0.00043 9.4E-09 64.0 25.8 142 17-188 23-166 (354)
306 KOG2695 WD40 repeat protein [G 98.4 1.8E-06 3.9E-11 82.3 10.7 156 11-198 217-387 (425)
307 KOG2695 WD40 repeat protein [G 98.4 8.4E-07 1.8E-11 84.5 8.4 141 90-235 228-381 (425)
308 KOG1275 PAB-dependent poly(A) 98.4 4.4E-06 9.5E-11 89.1 14.2 179 16-228 146-340 (1118)
309 PF00400 WD40: WD domain, G-be 98.4 1.3E-06 2.8E-11 57.7 6.8 39 189-228 1-39 (39)
310 KOG1645 RING-finger-containing 98.4 1.9E-05 4.2E-10 77.0 16.4 239 3-282 193-461 (463)
311 PF00400 WD40: WD domain, G-be 98.4 1.4E-06 3.1E-11 57.4 6.0 38 107-145 2-39 (39)
312 PF00930 DPPIV_N: Dipeptidyl p 98.3 0.00063 1.4E-08 69.8 27.3 304 14-369 1-347 (353)
313 PF15492 Nbas_N: Neuroblastoma 98.3 0.00079 1.7E-08 63.5 24.8 168 118-291 44-268 (282)
314 cd00216 PQQ_DH Dehydrogenases 98.3 0.00024 5.2E-09 76.2 24.4 234 18-292 111-434 (488)
315 PF04053 Coatomer_WDAD: Coatom 98.3 0.0002 4.3E-09 74.7 22.8 216 10-284 37-264 (443)
316 KOG2066 Vacuolar assembly/sort 98.2 0.00011 2.3E-09 78.1 20.0 173 17-232 49-235 (846)
317 KOG1275 PAB-dependent poly(A) 98.2 2.4E-05 5.2E-10 83.7 15.1 183 85-280 146-340 (1118)
318 KOG2066 Vacuolar assembly/sort 98.2 6.7E-05 1.5E-09 79.5 17.8 175 86-282 49-233 (846)
319 KOG0309 Conserved WD40 repeat- 98.2 5.2E-06 1.1E-10 86.5 9.4 200 2-231 113-340 (1081)
320 KOG0882 Cyclophilin-related pe 98.2 7.3E-06 1.6E-10 80.8 9.5 201 86-293 20-242 (558)
321 KOG4649 PQQ (pyrrolo-quinoline 98.2 0.00084 1.8E-08 62.2 21.9 187 86-289 23-213 (354)
322 PRK02888 nitrous-oxide reducta 98.2 0.00038 8.3E-09 73.7 22.3 102 125-231 284-405 (635)
323 KOG2041 WD40 repeat protein [G 98.2 8.1E-05 1.8E-09 77.6 16.7 188 2-219 70-278 (1189)
324 KOG0882 Cyclophilin-related pe 98.1 6.3E-05 1.4E-09 74.4 13.4 252 1-290 7-313 (558)
325 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.0 0.0038 8.2E-08 67.3 27.1 151 18-192 121-338 (527)
326 COG3391 Uncharacterized conser 98.0 0.0069 1.5E-07 62.8 27.8 189 88-289 88-290 (381)
327 KOG1832 HIV-1 Vpr-binding prot 98.0 5.3E-06 1.1E-10 88.0 4.5 127 150-289 1092-1221(1516)
328 KOG1920 IkappaB kinase complex 98.0 0.0017 3.6E-08 72.4 23.0 194 9-233 72-325 (1265)
329 PRK02888 nitrous-oxide reducta 98.0 0.0028 6.2E-08 67.3 23.8 176 95-283 214-405 (635)
330 KOG3621 WD40 repeat-containing 98.0 4.9E-05 1.1E-09 79.4 10.6 152 11-189 39-199 (726)
331 COG3386 Gluconolactonase [Carb 98.0 0.0018 3.8E-08 64.2 21.2 196 86-293 37-253 (307)
332 PF14583 Pectate_lyase22: Olig 98.0 0.0097 2.1E-07 59.8 26.3 192 86-286 48-276 (386)
333 COG0823 TolB Periplasmic compo 97.9 0.003 6.6E-08 65.7 23.6 157 116-285 191-361 (425)
334 cd00216 PQQ_DH Dehydrogenases 97.9 0.0056 1.2E-07 65.7 25.8 195 17-235 61-324 (488)
335 PF08553 VID27: VID27 cytoplas 97.9 0.00091 2E-08 73.6 19.2 146 18-186 494-646 (794)
336 COG5170 CDC55 Serine/threonine 97.9 0.00011 2.4E-09 69.2 10.1 192 86-284 38-311 (460)
337 PF06433 Me-amine-dh_H: Methyl 97.8 0.017 3.7E-07 57.0 25.4 193 12-235 101-325 (342)
338 PF06433 Me-amine-dh_H: Methyl 97.8 0.0069 1.5E-07 59.7 22.7 178 96-285 17-216 (342)
339 PF11768 DUF3312: Protein of u 97.8 0.00014 3.1E-09 75.0 11.4 91 98-190 238-332 (545)
340 PF02897 Peptidase_S9_N: Proly 97.8 0.039 8.5E-07 58.1 30.3 238 10-286 128-408 (414)
341 KOG2114 Vacuolar assembly/sort 97.8 0.0026 5.6E-08 68.4 20.0 191 86-289 35-250 (933)
342 PF03178 CPSF_A: CPSF A subuni 97.8 0.014 3.1E-07 59.0 25.2 180 27-231 2-203 (321)
343 KOG1008 Uncharacterized conser 97.8 5.2E-06 1.1E-10 85.4 0.0 199 6-231 59-276 (783)
344 PF08553 VID27: VID27 cytoplas 97.7 0.0018 3.9E-08 71.3 18.8 142 86-229 493-646 (794)
345 COG0823 TolB Periplasmic compo 97.7 0.0011 2.4E-08 69.0 16.4 179 9-218 196-388 (425)
346 PF11768 DUF3312: Protein of u 97.7 0.00066 1.4E-08 70.3 14.4 79 4-113 260-338 (545)
347 KOG1008 Uncharacterized conser 97.7 8.5E-06 1.9E-10 83.9 0.6 197 67-282 58-275 (783)
348 COG3391 Uncharacterized conser 97.7 0.016 3.5E-07 60.0 24.2 193 10-233 78-286 (381)
349 KOG3617 WD40 and TPR repeat-co 97.7 0.0013 2.9E-08 70.2 15.7 181 11-230 21-220 (1416)
350 KOG1645 RING-finger-containing 97.7 0.0002 4.2E-09 70.1 8.9 150 98-253 175-337 (463)
351 PF06977 SdiA-regulated: SdiA- 97.6 0.025 5.5E-07 54.1 22.9 190 5-227 23-247 (248)
352 PF08596 Lgl_C: Lethal giant l 97.6 0.013 2.8E-07 60.4 22.3 215 10-235 6-295 (395)
353 KOG3617 WD40 and TPR repeat-co 97.6 0.00029 6.3E-09 75.0 10.1 107 121-230 19-131 (1416)
354 KOG1920 IkappaB kinase complex 97.6 0.0029 6.2E-08 70.6 18.0 189 86-284 80-324 (1265)
355 PF00780 CNH: CNH domain; Int 97.6 0.053 1.2E-06 53.4 25.9 232 14-296 4-269 (275)
356 KOG4499 Ca2+-binding protein R 97.5 0.0065 1.4E-07 55.6 16.2 205 86-299 27-258 (310)
357 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.5 0.079 1.7E-06 57.2 27.4 199 17-235 69-338 (527)
358 KOG3621 WD40 repeat-containing 97.5 0.0015 3.3E-08 68.6 13.2 143 86-232 45-199 (726)
359 PF14583 Pectate_lyase22: Olig 97.5 0.13 2.7E-06 52.0 25.7 234 12-286 42-332 (386)
360 PF03178 CPSF_A: CPSF A subuni 97.4 0.018 3.9E-07 58.3 20.1 175 97-282 3-202 (321)
361 PF05694 SBP56: 56kDa selenium 97.4 0.17 3.6E-06 51.6 25.2 150 86-235 141-347 (461)
362 COG3386 Gluconolactonase [Carb 97.3 0.12 2.6E-06 51.4 23.6 143 118-272 111-275 (307)
363 PF05096 Glu_cyclase_2: Glutam 97.3 0.12 2.6E-06 49.4 22.1 175 12-218 51-249 (264)
364 KOG4640 Anaphase-promoting com 97.3 0.0013 2.8E-08 68.4 9.5 93 66-169 21-115 (665)
365 PF08596 Lgl_C: Lethal giant l 97.2 0.062 1.3E-06 55.5 21.4 169 115-291 84-299 (395)
366 PF06977 SdiA-regulated: SdiA- 97.2 0.16 3.5E-06 48.6 22.5 194 67-279 23-247 (248)
367 COG3490 Uncharacterized protei 97.2 0.1 2.3E-06 49.5 20.0 181 86-280 125-346 (366)
368 KOG2079 Vacuolar assembly/sort 97.2 0.0042 9E-08 68.5 12.2 95 86-180 99-198 (1206)
369 PF04053 Coatomer_WDAD: Coatom 97.1 0.022 4.7E-07 59.7 17.2 130 86-231 44-174 (443)
370 PF02897 Peptidase_S9_N: Proly 97.1 0.45 9.8E-06 50.0 27.7 188 86-282 135-357 (414)
371 PRK13616 lipoprotein LpqB; Pro 97.1 0.096 2.1E-06 57.1 22.4 123 98-229 381-524 (591)
372 PF14655 RAB3GAP2_N: Rab3 GTPa 97.1 0.18 3.8E-06 52.1 22.4 76 160-235 308-403 (415)
373 PF04841 Vps16_N: Vps16, N-ter 97.0 0.22 4.8E-06 52.0 23.6 97 125-228 186-285 (410)
374 PF04841 Vps16_N: Vps16, N-ter 97.0 0.64 1.4E-05 48.6 27.0 187 10-233 33-249 (410)
375 PF00930 DPPIV_N: Dipeptidyl p 97.0 0.57 1.2E-05 48.1 26.2 163 98-272 160-347 (353)
376 smart00320 WD40 WD40 repeats. 96.9 0.0031 6.8E-08 39.9 5.8 39 189-228 2-40 (40)
377 PF00780 CNH: CNH domain; Int 96.9 0.2 4.3E-06 49.4 20.8 141 86-235 7-170 (275)
378 TIGR03074 PQQ_membr_DH membran 96.9 0.34 7.5E-06 54.4 24.3 198 86-291 194-486 (764)
379 PF05096 Glu_cyclase_2: Glutam 96.8 0.4 8.7E-06 45.9 21.0 171 109-289 36-210 (264)
380 KOG4441 Proteins containing BT 96.8 0.14 3E-06 55.8 20.4 180 86-282 333-546 (571)
381 smart00320 WD40 WD40 repeats. 96.8 0.0037 8.1E-08 39.6 5.3 32 114-145 9-40 (40)
382 KOG4640 Anaphase-promoting com 96.7 0.0071 1.5E-07 63.1 9.0 91 118-209 21-115 (665)
383 KOG2395 Protein involved in va 96.7 0.11 2.5E-06 53.3 16.8 136 90-230 350-500 (644)
384 PF14783 BBS2_Mid: Ciliary BBS 96.6 0.2 4.4E-06 40.9 15.0 102 6-142 2-109 (111)
385 PHA02713 hypothetical protein; 96.6 0.16 3.5E-06 55.4 19.3 186 86-284 304-535 (557)
386 KOG2395 Protein involved in va 96.6 0.038 8.3E-07 56.7 13.0 150 14-186 342-499 (644)
387 PF14783 BBS2_Mid: Ciliary BBS 96.6 0.13 2.8E-06 42.0 13.7 99 120-225 2-109 (111)
388 COG3490 Uncharacterized protei 96.6 0.18 4E-06 47.9 16.5 126 86-217 80-243 (366)
389 TIGR03074 PQQ_membr_DH membran 96.4 1 2.2E-05 50.7 24.2 206 17-235 194-482 (764)
390 PRK13616 lipoprotein LpqB; Pro 96.4 0.29 6.3E-06 53.4 19.4 173 11-209 355-550 (591)
391 PF05694 SBP56: 56kDa selenium 96.1 1.2 2.6E-05 45.6 20.6 193 86-284 87-344 (461)
392 KOG4499 Ca2+-binding protein R 95.8 0.26 5.7E-06 45.5 12.8 91 70-168 162-262 (310)
393 PF12234 Rav1p_C: RAVE protein 95.8 0.4 8.7E-06 52.0 16.4 98 89-186 43-155 (631)
394 COG3204 Uncharacterized protei 95.6 1.7 3.7E-05 41.9 18.1 156 68-232 88-265 (316)
395 PHA02713 hypothetical protein; 95.5 0.47 1E-05 51.9 16.3 141 86-233 352-536 (557)
396 PHA03098 kelch-like protein; P 95.4 0.86 1.9E-05 49.8 18.0 143 86-233 295-467 (534)
397 KOG2444 WD40 repeat protein [G 95.3 0.056 1.2E-06 49.7 6.9 61 86-147 114-177 (238)
398 KOG2079 Vacuolar assembly/sort 95.3 0.07 1.5E-06 59.3 8.8 100 128-230 98-203 (1206)
399 PF14870 PSII_BNR: Photosynthe 95.2 3.8 8.2E-05 40.6 20.5 153 115-279 142-301 (302)
400 PF12894 Apc4_WD40: Anaphase-p 95.1 0.051 1.1E-06 37.0 4.5 34 3-39 11-44 (47)
401 KOG2444 WD40 repeat protein [G 95.1 0.068 1.5E-06 49.2 6.7 102 86-187 70-177 (238)
402 PF14870 PSII_BNR: Photosynthe 94.9 4.3 9.4E-05 40.2 20.5 136 86-227 156-301 (302)
403 TIGR03118 PEPCTERM_chp_1 conse 94.9 4 8.7E-05 39.8 20.8 210 6-233 23-282 (336)
404 PHA03098 kelch-like protein; P 94.9 1.3 2.8E-05 48.4 17.7 143 86-233 343-514 (534)
405 PF14761 HPS3_N: Hermansky-Pud 94.9 2 4.2E-05 39.7 15.5 137 87-229 29-213 (215)
406 PHA02790 Kelch-like protein; P 94.8 2.2 4.7E-05 45.8 18.5 139 86-232 319-472 (480)
407 TIGR02604 Piru_Ver_Nterm putat 94.8 1.5 3.2E-05 45.3 16.7 96 119-217 73-201 (367)
408 PF10647 Gmad1: Lipoprotein Lp 94.5 4.9 0.00011 39.0 21.6 139 10-178 28-184 (253)
409 KOG1916 Nuclear protein, conta 94.5 0.038 8.2E-07 60.1 4.1 117 68-192 183-328 (1283)
410 PHA02790 Kelch-like protein; P 94.4 3.2 6.9E-05 44.5 18.7 180 86-284 272-472 (480)
411 PF12894 Apc4_WD40: Anaphase-p 94.3 0.14 3E-06 34.8 5.1 35 116-151 10-44 (47)
412 COG1520 FOG: WD40-like repeat 94.2 6.5 0.00014 40.5 20.1 202 86-292 68-278 (370)
413 PF10647 Gmad1: Lipoprotein Lp 94.2 5.7 0.00012 38.5 21.9 114 118-231 66-198 (253)
414 KOG4441 Proteins containing BT 94.2 1.9 4.2E-05 47.1 16.6 142 86-233 381-549 (571)
415 KOG1897 Damage-specific DNA bi 94.1 6 0.00013 44.5 19.6 174 98-281 752-941 (1096)
416 PRK10115 protease 2; Provision 94.1 12 0.00027 42.0 31.8 188 11-230 132-344 (686)
417 KOG1897 Damage-specific DNA bi 94.1 13 0.00028 42.0 26.4 132 139-282 470-613 (1096)
418 COG3204 Uncharacterized protei 94.0 4.6 0.0001 39.1 16.3 116 115-231 83-211 (316)
419 COG5167 VID27 Protein involved 93.8 1.4 3.1E-05 45.4 13.2 152 12-187 474-632 (776)
420 PF10168 Nup88: Nuclear pore c 93.5 3.9 8.5E-05 45.8 17.6 35 115-149 144-181 (717)
421 COG3823 Glutamine cyclotransfe 92.8 6.4 0.00014 36.1 14.4 171 17-218 56-247 (262)
422 KOG3630 Nuclear pore complex, 92.7 0.52 1.1E-05 53.1 8.9 151 11-178 106-262 (1405)
423 PF12234 Rav1p_C: RAVE protein 92.6 4.8 0.0001 43.9 16.0 119 154-280 24-154 (631)
424 PRK13684 Ycf48-like protein; P 92.5 13 0.00029 37.6 20.3 150 117-280 172-329 (334)
425 PF14761 HPS3_N: Hermansky-Pud 92.1 5.9 0.00013 36.7 13.7 101 130-233 29-166 (215)
426 PRK10115 protease 2; Provision 91.9 26 0.00055 39.5 26.0 98 86-186 138-254 (686)
427 PF08728 CRT10: CRT10; InterP 91.8 7 0.00015 43.2 16.1 101 86-186 114-245 (717)
428 PF15390 DUF4613: Domain of un 91.8 14 0.00029 39.5 17.4 115 116-231 55-187 (671)
429 PF15390 DUF4613: Domain of un 91.7 21 0.00046 38.1 19.0 115 68-188 59-187 (671)
430 PF08625 Utp13: Utp13 specific 91.6 0.47 1E-05 41.1 5.8 69 492-561 49-118 (141)
431 KOG2280 Vacuolar assembly/sort 91.4 15 0.00033 40.2 17.7 146 86-235 94-251 (829)
432 COG5167 VID27 Protein involved 91.4 5.8 0.00013 41.2 13.9 135 92-232 486-634 (776)
433 PF07995 GSDH: Glucose / Sorbo 91.3 18 0.00039 36.6 26.5 28 10-39 6-33 (331)
434 KOG3630 Nuclear pore complex, 90.9 3.3 7.2E-05 47.1 12.6 127 89-217 116-261 (1405)
435 KOG2377 Uncharacterized conser 90.7 8.8 0.00019 39.4 14.3 130 89-218 36-172 (657)
436 PF10168 Nup88: Nuclear pore c 90.5 6.8 0.00015 43.9 15.0 27 119-146 86-112 (717)
437 PF10313 DUF2415: Uncharacteri 90.5 0.89 1.9E-05 30.0 4.9 32 4-37 1-35 (43)
438 PF03022 MRJP: Major royal jel 90.2 21 0.00045 35.4 19.9 134 97-232 35-217 (287)
439 TIGR02604 Piru_Ver_Nterm putat 90.0 16 0.00035 37.6 16.7 100 118-218 14-142 (367)
440 PRK13684 Ycf48-like protein; P 89.5 25 0.00055 35.6 17.3 109 116-228 213-329 (334)
441 PF14655 RAB3GAP2_N: Rab3 GTPa 89.0 2.6 5.6E-05 43.7 9.6 84 9-112 311-406 (415)
442 PF11715 Nup160: Nucleoporin N 88.8 5.4 0.00012 43.7 12.7 73 86-158 158-259 (547)
443 PF07569 Hira: TUP1-like enhan 88.8 3.4 7.3E-05 39.0 9.6 29 125-153 18-46 (219)
444 PF07250 Glyoxal_oxid_N: Glyox 88.4 4.1 8.8E-05 38.9 9.8 141 142-290 49-205 (243)
445 KOG1900 Nuclear pore complex, 88.3 5.3 0.00012 46.3 12.0 144 24-188 96-273 (1311)
446 PF14781 BBS2_N: Ciliary BBSom 87.6 17 0.00036 31.0 11.8 107 123-233 4-128 (136)
447 PF10395 Utp8: Utp8 family; I 87.5 45 0.00098 36.7 17.9 165 9-196 133-314 (670)
448 PF07676 PD40: WD40-like Beta 87.4 2.3 4.9E-05 27.4 5.4 34 194-227 3-38 (39)
449 KOG2377 Uncharacterized conser 87.3 36 0.00078 35.2 15.8 106 3-135 66-171 (657)
450 COG4257 Vgb Streptogramin lyas 86.8 31 0.00067 33.3 16.4 185 86-283 73-263 (353)
451 PF10313 DUF2415: Uncharacteri 86.6 3.2 6.8E-05 27.5 5.5 31 118-148 1-34 (43)
452 KOG4659 Uncharacterized conser 86.5 67 0.0014 37.9 18.8 38 347-387 659-696 (1899)
453 KOG1896 mRNA cleavage and poly 86.1 76 0.0016 37.1 19.8 141 86-232 1046-1215(1366)
454 PF07569 Hira: TUP1-like enhan 85.8 4.2 9.2E-05 38.3 8.4 61 86-147 22-95 (219)
455 PLN00033 photosystem II stabil 85.6 49 0.0011 34.4 18.6 143 121-279 242-396 (398)
456 TIGR02276 beta_rpt_yvtn 40-res 85.5 3.4 7.4E-05 26.8 5.6 31 15-45 1-32 (42)
457 PF08728 CRT10: CRT10; InterP 85.2 27 0.0006 38.7 15.1 108 120-229 103-245 (717)
458 KOG1916 Nuclear protein, conta 85.1 1.6 3.6E-05 48.1 5.8 104 96-230 153-265 (1283)
459 PLN02193 nitrile-specifier pro 85.0 58 0.0013 34.8 19.7 145 86-233 176-354 (470)
460 TIGR03548 mutarot_permut cycli 85.0 45 0.00098 33.5 18.7 103 128-233 72-197 (323)
461 PF03022 MRJP: Major royal jel 84.8 43 0.00093 33.1 19.9 191 10-217 5-253 (287)
462 PLN00033 photosystem II stabil 84.8 53 0.0011 34.2 17.2 107 116-227 279-396 (398)
463 KOG4460 Nuclear pore complex, 84.6 21 0.00046 37.4 13.0 94 119-233 105-201 (741)
464 PF14727 PHTB1_N: PTHB1 N-term 83.5 62 0.0013 33.8 27.8 181 86-281 145-359 (418)
465 TIGR02276 beta_rpt_yvtn 40-res 83.4 5.3 0.00012 25.9 5.8 30 169-198 1-33 (42)
466 KOG1983 Tomosyn and related SN 83.2 39 0.00083 39.7 16.2 27 10-36 40-66 (993)
467 KOG2247 WD40 repeat-containing 82.3 0.24 5.2E-06 50.7 -1.7 139 10-178 39-178 (615)
468 PF02333 Phytase: Phytase; In 82.1 64 0.0014 33.1 24.0 190 16-232 67-292 (381)
469 PLN02153 epithiospecifier prot 81.8 63 0.0014 32.8 20.4 103 86-191 33-171 (341)
470 PF02333 Phytase: Phytase; In 81.6 67 0.0014 33.0 23.2 187 86-284 68-292 (381)
471 PF09384 UTP15_C: UTP15 C term 81.3 4.1 8.8E-05 35.7 5.9 71 490-561 60-130 (148)
472 COG4590 ABC-type uncharacteriz 81.2 27 0.00059 35.9 12.1 161 4-191 221-390 (733)
473 PF10214 Rrn6: RNA polymerase 80.7 1.1E+02 0.0024 35.0 23.2 115 65-188 145-277 (765)
474 PF12657 TFIIIC_delta: Transcr 80.7 12 0.00025 33.9 8.9 26 161-186 6-31 (173)
475 PF07676 PD40: WD40-like Beta 80.5 3 6.5E-05 26.8 3.7 25 8-32 11-38 (39)
476 KOG2280 Vacuolar assembly/sort 80.2 34 0.00074 37.7 13.1 180 97-290 65-254 (829)
477 PF07995 GSDH: Glucose / Sorbo 80.0 43 0.00094 33.9 13.7 99 119-219 3-133 (331)
478 COG4257 Vgb Streptogramin lyas 79.8 61 0.0013 31.4 19.8 190 11-232 67-264 (353)
479 PF10214 Rrn6: RNA polymerase 79.7 70 0.0015 36.7 16.6 112 118-232 146-278 (765)
480 TIGR03606 non_repeat_PQQ dehyd 78.8 93 0.002 32.9 17.8 29 10-38 34-62 (454)
481 PF07250 Glyoxal_oxid_N: Glyox 78.0 66 0.0014 30.8 14.1 115 86-200 78-210 (243)
482 TIGR03118 PEPCTERM_chp_1 conse 77.3 78 0.0017 31.2 19.3 194 86-288 34-285 (336)
483 COG3823 Glutamine cyclotransfe 76.4 65 0.0014 29.8 15.7 158 120-288 48-210 (262)
484 KOG1900 Nuclear pore complex, 76.1 38 0.00082 39.8 12.6 139 92-232 95-274 (1311)
485 PF14781 BBS2_N: Ciliary BBSom 75.5 51 0.0011 28.2 13.1 111 165-286 4-129 (136)
486 KOG1898 Splicing factor 3b, su 75.1 1.7E+02 0.0036 34.0 17.4 172 98-281 855-1047(1205)
487 PF14269 Arylsulfotran_2: Aryl 74.3 80 0.0017 31.4 13.4 121 6-156 146-297 (299)
488 PF12768 Rax2: Cortical protei 73.2 73 0.0016 31.3 12.5 78 96-175 16-105 (281)
489 KOG2247 WD40 repeat-containing 72.7 0.42 9.2E-06 48.9 -3.0 135 86-226 46-184 (615)
490 PF13449 Phytase-like: Esteras 72.7 1.1E+02 0.0024 30.8 17.8 101 117-218 19-165 (326)
491 COG4590 ABC-type uncharacteriz 72.6 16 0.00036 37.5 7.9 145 86-234 232-390 (733)
492 PF03088 Str_synth: Strictosid 72.2 31 0.00067 27.2 7.9 43 135-178 33-75 (89)
493 smart00564 PQQ beta-propeller 69.5 11 0.00024 22.8 4.1 27 86-112 6-32 (33)
494 PRK05560 DNA gyrase subunit A; 68.4 2.3E+02 0.005 32.7 22.3 189 86-282 548-772 (805)
495 COG5290 IkappaB kinase complex 68.4 1.3E+02 0.0029 33.6 13.8 91 121-212 250-349 (1243)
496 COG1770 PtrB Protease II [Amin 68.3 1.9E+02 0.0042 31.8 22.7 94 94-190 153-259 (682)
497 PF08801 Nucleoporin_N: Nup133 68.2 1.6E+02 0.0035 30.9 16.4 32 200-232 190-221 (422)
498 PF01731 Arylesterase: Arylest 67.6 30 0.00066 27.0 6.9 46 139-187 36-84 (86)
499 PF11715 Nup160: Nucleoporin N 67.3 10 0.00022 41.5 5.9 34 11-44 220-257 (547)
500 TIGR03548 mutarot_permut cycli 66.0 1.5E+02 0.0033 29.7 17.5 104 86-191 73-198 (323)
No 1
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.8e-53 Score=427.14 Aligned_cols=510 Identities=19% Similarity=0.254 Sum_probs=392.0
Q ss_pred CCcccceeEEEEcCCCCEEEEEeC-CCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccc
Q 007234 2 GSSNIRDILTSFSPALDYFAICSG-DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (612)
Q Consensus 2 ~s~~V~~l~~~fspdg~~las~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~ 80 (612)
+..+|..+ +|+..|++||.|+. -|.+-||++++...+...++|...+.++.|+++
T Consensus 306 s~~~I~t~--~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpD---------------------- 361 (893)
T KOG0291|consen 306 SDQKILTV--SFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPD---------------------- 361 (893)
T ss_pred ccceeeEE--EecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCC----------------------
Confidence 45678544 99999999999887 489999999999999999999999999999988
Q ss_pred ccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCC
Q 007234 81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK 160 (612)
Q Consensus 81 ~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~ 160 (612)
++++++|+.||+|+|||..+|-|..++ ..|++.|+++.|+..|+.++++|.||+|+.||+..+++.++|.....
T Consensus 362 -----gq~iaTG~eDgKVKvWn~~SgfC~vTF-teHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p 435 (893)
T KOG0291|consen 362 -----GQLIATGAEDGKVKVWNTQSGFCFVTF-TEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEP 435 (893)
T ss_pred -----CcEEEeccCCCcEEEEeccCceEEEEe-ccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCc
Confidence 999999999999999999999999888 46999999999999999999999999999999999999999987654
Q ss_pred -CeeEEEECCCCCEEEEeC---CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCcccc
Q 007234 161 -GISCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS 236 (612)
Q Consensus 161 -~v~~l~~spdg~~l~~~~---g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~ 236 (612)
...|++..|.|.++.+|+ =.|++|++++|+.+..+.||++||.+++|+|++..|++++ +|++|++||+-.....
T Consensus 436 ~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~S-WDkTVRiW~if~s~~~- 513 (893)
T KOG0291|consen 436 IQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGS-WDKTVRIWDIFSSSGT- 513 (893)
T ss_pred eeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEecc-ccceEEEEEeeccCce-
Confidence 788999999999999998 3899999999999999999999999999999999999987 9999999999776432
Q ss_pred ceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhc
Q 007234 237 ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFA 316 (612)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~ 316 (612)
+.++.....++ .+.|. |+|+.|++++.||.|.+||.+.+.++..+...+....... ..+...+...-..
T Consensus 514 ---vEtl~i~sdvl-~vsfr-----PdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~--~~D~~ta~~sa~~ 582 (893)
T KOG0291|consen 514 ---VETLEIRSDVL-AVSFR-----PDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRK--ETDRITAENSAKG 582 (893)
T ss_pred ---eeeEeecccee-EEEEc-----CCCCeEEEEEecceEEEEEhhhceeeccccchhhcccccc--ccceeehhhcccC
Confidence 34455555554 35566 9999999999999999999999988877776655444321 1111111111222
Q ss_pred ccccceecCCCceEEEEeCCccCce----EEEeeccCCCeEEEEecCCCceEeccccceeeecceeeecceeecccC--C
Q 007234 317 AKLQDIVKPASVHTFVAYGLLLKPS----FQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNRVTALDRA--N 390 (612)
Q Consensus 317 ~~~d~~~~~~~~~~~~~~g~~~~~~----~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~~~~~~~~~~~--~ 390 (612)
-.+..+++++||.++++.|...+.+ .+.+.... ...+.+.|-||... .-++.++.+.++. ..++.+ +
T Consensus 583 K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkk-fqiS~N~sLdg~~e-----fln~rkmtEfG~~-~LiD~e~~~ 655 (893)
T KOG0291|consen 583 KTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKK-FQISDNRSLDGVLE-----FLNRRKMTEFGNM-DLIDTEESD 655 (893)
T ss_pred CceEEEEEcCCCCEEEecCCcccEEEEECchhheeee-EEeccccchhHHHH-----HhccccccccCCc-ccccccccc
Confidence 3455678888888888888766532 22222222 34555567777665 4567777777764 112211 1
Q ss_pred ---ccccccCCCcccchhhhhhcccCCCCCccccccccccchhhhhhhhcc-------Cc---ccccccCCccCCHHHHH
Q 007234 391 ---AEDAVLPLPKILDSYDKKNRHQNLSSDLDEVMTDVVDSESQAKFMEIK-------DD---KVEVEADSQTVCMEDRL 457 (612)
Q Consensus 391 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~---~~~~~~~~~e~~~~~~l 457 (612)
..+..+|+.++++.+.|+-||+ -.+...-.++.|..|+...++ |. .+|.+. +.++|.+...
T Consensus 656 ~e~~i~~~lpG~~~gdlssRr~rpe-----Irv~sv~fsPtgraFAaatTEGl~IYsld~~~~FDPf~L-D~~vTPe~v~ 729 (893)
T KOG0291|consen 656 LEGRIDIALPGVQRGDLSSRRFRPE-----IRVTSVQFSPTGRAFAAATTEGLLIYSLDTTILFDPFDL-DVDVTPESVR 729 (893)
T ss_pred ccccccccCCccccCCccccccCce-----EEEEEEEECCCcCeeeeecccceEEEecCCceEEccccc-ccccCHHHHH
Confidence 1256899999999999988884 233334457888888766432 11 234444 3456666666
Q ss_pred HhcCCCCCCCCCCCCchhhhhhhccc---------cccccCChhHHHHhhhccChhhHHHHHHHHHHHHhcCCCCccchH
Q 007234 458 RSLGILSNKDDLLSNSALEATLFNGI---------DFETNIPVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNIL 528 (612)
Q Consensus 458 ~~l~~~~~~~~~~~~~~~~~~L~~~l---------~~~~~~~~~~I~~ti~~Lp~~~~~~lL~~l~~~l~~~~~~~~~~~ 528 (612)
+++.. +.+..+|+.+| +++..+|.+.|+..+..||..|+.+||++|++.++..|| .|+++
T Consensus 730 ~al~~----------qey~~AlvmslRLNe~~lI~evlesvp~~~Ie~V~~~Lp~~y~erll~~l~~~l~~s~H-ieF~l 798 (893)
T KOG0291|consen 730 EALRE----------QEYLKALVMSLRLNEYKLIKEVLESVPIKDIELVASSLPTAYLERLLKALSRFLENSPH-IEFYL 798 (893)
T ss_pred HHHhc----------chHHHHHHHHHhcCHHHHHHHHHHhCChhhhhhhhhcCcHHHHHHHHHHHHHHHhcCch-HHHHH
Confidence 66542 25566666666 678888999999999999999999999999988877775 89999
Q ss_pred HHHHHHHHHhcccccCCc-ChHHHHHHHHHHH-------HhhcccccccccceEeecccc
Q 007234 529 QWIYFILVNHGHHLLSQE-SLTPMLSSLYKVF-------RSASCKKTWSLGHSYFIADTN 580 (612)
Q Consensus 529 ~W~~~ll~~H~~~l~s~~-~l~~~L~~l~~~l-------~~r~~~~~~~~~~~~~~~~~~ 580 (612)
+|+++||.+||.||.... .+.|+|..||+.| .+-..-|-|+| .|+++-++
T Consensus 799 ~W~~~il~~hG~~~~~~~~~~~~~~~~lqk~i~r~~~~l~kl~~~Nky~L--~~lv~~~~ 856 (893)
T KOG0291|consen 799 RWLRAILTYHGSSLKRRAETLLPALTSLQKSIVRHIDDLSKLCSLNKYTL--RYLVSKRQ 856 (893)
T ss_pred HHHHHHHHHhhhhhhccceehhhHHHHHHHHHHHHHHHHHHHhhccHHHH--HHHHhhhh
Confidence 999999999999998653 4455555555554 44556677888 88776554
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.1e-46 Score=349.27 Aligned_cols=323 Identities=17% Similarity=0.223 Sum_probs=281.8
Q ss_pred CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (612)
Q Consensus 2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (612)
|.++| ||++|||+|..||+|+.|.++|+||+.+.....+.++|...|.++.|+++
T Consensus 114 H~e~V--l~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPD----------------------- 168 (480)
T KOG0271|consen 114 HGEAV--LSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPD----------------------- 168 (480)
T ss_pred CCCcE--EEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCC-----------------------
Confidence 35688 88899999999999999999999999999999999999998888877777
Q ss_pred cccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEec-----CCCEEEEEecCCcEEEEECCCCceeEEEe
Q 007234 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-----HGSCIYSAGADGMVCEIDPLTGSLLGKFR 156 (612)
Q Consensus 82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp-----~~~~l~s~s~dg~v~iwd~~~~~~~~~~~ 156 (612)
+..|++|+.+|.|++||+.+|+++..-+.+|...|++++|.| ..++|+++|.||+|+|||+..+.++..+.
T Consensus 169 ----gk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~ls 244 (480)
T KOG0271|consen 169 ----GKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLS 244 (480)
T ss_pred ----cchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEec
Confidence 889999999999999999999999888899999999999976 56789999999999999999999999999
Q ss_pred cCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEe-----------eCCc-----------
Q 007234 157 ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFS-----------DNGK----------- 212 (612)
Q Consensus 157 ~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~s-----------p~~~----------- 212 (612)
+|..+|+|++|--+| ++++|+ ++|++|+...|+++++++||...|+.++.+ |.++
T Consensus 245 gHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~ 323 (480)
T KOG0271|consen 245 GHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKK 323 (480)
T ss_pred cCccceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHH
Confidence 999999999998655 888888 899999999999999999999999999876 3343
Q ss_pred --------------EEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEE
Q 007234 213 --------------YVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYI 278 (612)
Q Consensus 213 --------------~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~i 278 (612)
.+++++ +|.++.+|+....++. +..+..+...+..+.|+ ||++++++++.|+.|++
T Consensus 324 Al~rY~~~~~~~~erlVSgs-Dd~tlflW~p~~~kkp----i~rmtgHq~lVn~V~fS-----Pd~r~IASaSFDkSVkL 393 (480)
T KOG0271|consen 324 ALERYEAVLKDSGERLVSGS-DDFTLFLWNPFKSKKP----ITRMTGHQALVNHVSFS-----PDGRYIASASFDKSVKL 393 (480)
T ss_pred HHHHHHHhhccCcceeEEec-CCceEEEecccccccc----hhhhhchhhheeeEEEC-----CCccEEEEeecccceee
Confidence 388887 7999999997765432 34455666677788898 99999999999999999
Q ss_pred EECCCcceecccCCceeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEec
Q 007234 279 WYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCS 358 (612)
Q Consensus 279 wd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S 358 (612)
|+..+|+.+..+.++...+-... ++.|.+ .+++++.|.+++.|+ ...+.....+.+|..+|.++.||
T Consensus 394 W~g~tGk~lasfRGHv~~VYqva-wsaDsR----LlVS~SkDsTLKvw~--------V~tkKl~~DLpGh~DEVf~vDws 460 (480)
T KOG0271|consen 394 WDGRTGKFLASFRGHVAAVYQVA-WSADSR----LLVSGSKDSTLKVWD--------VRTKKLKQDLPGHADEVFAVDWS 460 (480)
T ss_pred eeCCCcchhhhhhhccceeEEEE-eccCcc----EEEEcCCCceEEEEE--------eeeeeecccCCCCCceEEEEEec
Confidence 99999999987776655444333 677877 899999999888877 22334445778899999999999
Q ss_pred CCCceEeccccceeeeccee
Q 007234 359 QDGVLLPMSQSLLKSKRGRY 378 (612)
Q Consensus 359 ~dg~~l~~s~s~d~~~~~w~ 378 (612)
|||..+ ++|+.|+.+++|.
T Consensus 461 pDG~rV-~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 461 PDGQRV-ASGGKDKVLRLWR 479 (480)
T ss_pred CCCcee-ecCCCceEEEeec
Confidence 999999 9999999999994
No 3
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1e-45 Score=373.23 Aligned_cols=468 Identities=18% Similarity=0.220 Sum_probs=339.1
Q ss_pred CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (612)
Q Consensus 2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (612)
|.+.||++ +||.|...+++|+ .+.++||+..++++++++... ..-|..+.|.
T Consensus 372 HR~dVRsl--~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~--------------------y~l~~~Fvpg----- 423 (888)
T KOG0306|consen 372 HRSDVRSL--CVSSDSILLASGA-GESIKIWNRDTLKCIRTITCG--------------------YILASKFVPG----- 423 (888)
T ss_pred chhheeEE--EeecCceeeeecC-CCcEEEEEccCcceeEEeccc--------------------cEEEEEecCC-----
Confidence 46789888 9999998888876 468999999999999998521 2334444443
Q ss_pred cccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCC-----Ccee----
Q 007234 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT-----GSLL---- 152 (612)
Q Consensus 82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~-----~~~~---- 152 (612)
+.++++|..+|.+.+||+.+...+..+ ++|.+.|++++.+||+..+++||.|.+|++||+.- |...
T Consensus 424 ----d~~Iv~G~k~Gel~vfdlaS~~l~Eti-~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~ls 498 (888)
T KOG0306|consen 424 ----DRYIVLGTKNGELQVFDLASASLVETI-RAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLS 498 (888)
T ss_pred ----CceEEEeccCCceEEEEeehhhhhhhh-hccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeee
Confidence 788999999999999999999888666 58999999999999999999999999999999641 2211
Q ss_pred ----EEEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEE
Q 007234 153 ----GKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIAL 226 (612)
Q Consensus 153 ----~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~v 226 (612)
++++ -...|.|+++||||++|+++- +++++|-+.+.+....+.||.-||.||..+||++.+++|+ .|++|++
T Consensus 499 l~~~rtLe-l~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgS-ADKnVKi 576 (888)
T KOG0306|consen 499 LKHTRTLE-LEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGS-ADKNVKI 576 (888)
T ss_pred eccceEEe-ccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEecc-CCCceEE
Confidence 1222 346899999999999999997 8999999999999999999999999999999999999997 7999999
Q ss_pred EEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCC
Q 007234 227 WRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKS 306 (612)
Q Consensus 227 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~ 306 (612)
|-++.|.+. ..+..|...+.++.|. |....+++++.||.|+.||.+..+.+
T Consensus 577 WGLdFGDCH-----KS~fAHdDSvm~V~F~-----P~~~~FFt~gKD~kvKqWDg~kFe~i------------------- 627 (888)
T KOG0306|consen 577 WGLDFGDCH-----KSFFAHDDSVMSVQFL-----PKTHLFFTCGKDGKVKQWDGEKFEEI------------------- 627 (888)
T ss_pred eccccchhh-----hhhhcccCceeEEEEc-----ccceeEEEecCcceEEeechhhhhhh-------------------
Confidence 999999854 4555666666777787 89999999999999999997655442
Q ss_pred CcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceeeecceeec
Q 007234 307 QKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNRVTAL 386 (612)
Q Consensus 307 ~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~~~~~~~~ 386 (612)
+++.+|..+|++++.+|+|.++ +|+|+|.++|+|+.++.+..+
T Consensus 628 ------------------------------------q~L~~H~~ev~cLav~~~G~~v-vs~shD~sIRlwE~tde~~~l 670 (888)
T KOG0306|consen 628 ------------------------------------QKLDGHHSEVWCLAVSPNGSFV-VSSSHDKSIRLWERTDEILIL 670 (888)
T ss_pred ------------------------------------eeeccchheeeeeEEcCCCCeE-EeccCCceeEeeeccCcceee
Confidence 3677899999999999999999 999999999999987655444
Q ss_pred ccCCccccccCCCcccchhhhhhcccCCCCCccccccccccchhhhhhhhccCcccccccCCccCCHHHHHHhcCCCC--
Q 007234 387 DRANAEDAVLPLPKILDSYDKKNRHQNLSSDLDEVMTDVVDSESQAKFMEIKDDKVEVEADSQTVCMEDRLRSLGILS-- 464 (612)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~l~~l~~~~-- 464 (612)
+.+.+ .+. ...|. ..-+ +++.... .....|.... .. -+..+.....|..++++++..
T Consensus 671 EeekE--~Er--Ee~yE-----~l~~--~~e~~~~--~~~~~g~~~~--~s------kkTieSvk~aE~i~ea~di~~~e 729 (888)
T KOG0306|consen 671 EEEKE--GER--EEEYE-----TLLA--SEEVVAG--DGSADGDAGV--AS------KKTIESVKSAERILEALDIGREE 729 (888)
T ss_pred ehhhh--hhh--HHHHH-----Hhhh--hcccccC--CCcccccccc--hh------hhhhHHHHHHHHHHHHHHHHHHH
Confidence 42111 000 00010 0000 0000000 0000000000 00 011112222233344444321
Q ss_pred --CCCCCCCCchhhhhhhccc---------cccccCChhHHHHhhhccChhhHHHHHHHHHHHHhcCCCCccchHHHHHH
Q 007234 465 --NKDDLLSNSALEATLFNGI---------DFETNIPVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYF 533 (612)
Q Consensus 465 --~~~~~~~~~~~~~~L~~~l---------~~~~~~~~~~I~~ti~~Lp~~~~~~lL~~l~~~l~~~~~~~~~~~~W~~~ 533 (612)
...+..+..|. .+|++|+ .++..++.+.++.++.-||++||+.+|+++.+-+ +++.+.+++++.+.+
T Consensus 730 ~~~~ee~~~g~P~-npll~a~~ks~e~yi~dtl~~Ir~S~Ld~aLlllPfS~V~~vl~~i~~~~-q~~~~veLv~rv~~f 807 (888)
T KOG0306|consen 730 LTQLEEYSPGHPH-NPLLNAYNKSPEKYIVDTLMKIRASELDDALLLLPFSYVLDVLKFIDECI-QRKSKVELVCRVLFF 807 (888)
T ss_pred HHhHHhhcCCCCC-cHHHHHhcCCHHHHHHHHHHhcchhhhhhhheeccHHHHHHHHHHHHHHH-cCCCcceeEeeeeee
Confidence 00111001121 4566665 5667789999999999999999999999998655 445679999999999
Q ss_pred HHHHhcccccCCcChHHHHHHHHHHHHhhcccccccccceEeecccceeeeccchhccCCceeEe
Q 007234 534 ILVNHGHHLLSQESLTPMLSSLYKVFRSASCKKTWSLGHSYFIADTNHLLLLPDYCIQRSSFSIF 598 (612)
Q Consensus 534 ll~~H~~~l~s~~~l~~~L~~l~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (612)
|+++|..+|.++++|+|.|..+...+++.-+.-.=-+ +|++++-.. ++-|+-++.....|
T Consensus 808 L~rih~~~it~~~~~kp~l~~i~s~l~~~v~q~rdv~--G~NlagL~~---l~~E~e~r~~v~~f 867 (888)
T KOG0306|consen 808 LLRIHHKQITAHKNMKPLLEKIKSKLREIVEQLRDVL--GFNLAGLSL---LKQEWEDRENVKFF 867 (888)
T ss_pred hhhhhhhhhccccchHHHHHHHHHHHHHHHHHhhhhh--hhhhhHHHH---HHHhhhchhcchhH
Confidence 9999999999999999999888877776544433335 777777543 34445444444333
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.2e-43 Score=335.43 Aligned_cols=281 Identities=18% Similarity=0.218 Sum_probs=254.5
Q ss_pred CcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccc
Q 007234 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (612)
Q Consensus 3 s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (612)
+.|| ..|.||+|++.|||||.+|.++||+..++..+++|.+|.+.+.++.|.|. +.
T Consensus 175 ~rPi--s~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~------------------~~---- 230 (459)
T KOG0272|consen 175 TRPI--SGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPV------------------DS---- 230 (459)
T ss_pred CCcc--eeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccC------------------CC----
Confidence 5688 55699999999999999999999999999999999999887766666554 10
Q ss_pred ccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCe
Q 007234 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI 162 (612)
Q Consensus 83 ~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v 162 (612)
+..+++|+.||++++|++.+...+..+ .+|...|..++|+|+|++|.|++.|.+-++||+.++..+...++|..+|
T Consensus 231 ---~~~lat~s~Dgtvklw~~~~e~~l~~l-~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v 306 (459)
T KOG0272|consen 231 ---DLNLATASADGTVKLWKLSQETPLQDL-EGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGV 306 (459)
T ss_pred ---ccceeeeccCCceeeeccCCCcchhhh-hcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhccccccc
Confidence 567999999999999999998888777 6899999999999999999999999999999999999988899999999
Q ss_pred eEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceee
Q 007234 163 SCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV 240 (612)
Q Consensus 163 ~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~ 240 (612)
.+++|.|||.++++|+ ..-+|||+++|+++..+.||..+|.++.|+|+|..+++++ .|++++|||++..+. +
T Consensus 307 ~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs-~Dnt~kVWDLR~r~~-----l 380 (459)
T KOG0272|consen 307 FSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGS-SDNTCKVWDLRMRSE-----L 380 (459)
T ss_pred ceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecC-CCCcEEEeeeccccc-----c
Confidence 9999999999999999 6789999999999999999999999999999999999987 799999999998764 4
Q ss_pred EeecCCceeEEeEEecCCccCC-CCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhcccc
Q 007234 241 LAMEHPAVFMDCRCIDNGGVDD-AGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKL 319 (612)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~-~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~ 319 (612)
+.+..+...++-+.|+ | .|.+|++++.|+++++|...++..++
T Consensus 381 y~ipAH~nlVS~Vk~~-----p~~g~fL~TasyD~t~kiWs~~~~~~~k------------------------------- 424 (459)
T KOG0272|consen 381 YTIPAHSNLVSQVKYS-----PQEGYFLVTASYDNTVKIWSTRTWSPLK------------------------------- 424 (459)
T ss_pred eecccccchhhheEec-----ccCCeEEEEcccCcceeeecCCCcccch-------------------------------
Confidence 7778888888899998 6 78999999999999999876665432
Q ss_pred cceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeeccee
Q 007234 320 QDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY 378 (612)
Q Consensus 320 d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~ 378 (612)
++.+|.+.|.++.+|+||.++ +|+|.|+++|+|.
T Consensus 425 ------------------------sLaGHe~kV~s~Dis~d~~~i-~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 425 ------------------------SLAGHEGKVISLDISPDSQAI-ATSSFDRTIKLWR 458 (459)
T ss_pred ------------------------hhcCCccceEEEEeccCCceE-EEeccCceeeecc
Confidence 567899999999999999999 9999999999995
No 5
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1e-38 Score=299.57 Aligned_cols=292 Identities=20% Similarity=0.252 Sum_probs=234.8
Q ss_pred EEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCC
Q 007234 39 VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPG 118 (612)
Q Consensus 39 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~ 118 (612)
|...+.+|.+.|.+..|+++ +..+++|+.|.++++||+.+....... ++|..
T Consensus 107 CssS~~GH~e~Vl~~~fsp~---------------------------g~~l~tGsGD~TvR~WD~~TeTp~~t~-KgH~~ 158 (480)
T KOG0271|consen 107 CSSSIAGHGEAVLSVQFSPT---------------------------GSRLVTGSGDTTVRLWDLDTETPLFTC-KGHKN 158 (480)
T ss_pred eccccCCCCCcEEEEEecCC---------------------------CceEEecCCCceEEeeccCCCCcceee-cCCcc
Confidence 44556677777777777766 889999999999999999999988777 68999
Q ss_pred CeEEEEEecCCCEEEEEecCCcEEEEECCCCceeE-EEecCCCCeeEEEECC-----CCCEEEEeC--CeEEEEEcCCCe
Q 007234 119 GVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLG-KFRASTKGISCMAVSS-----DGKMLATAA--GQLKTFNCSDHK 190 (612)
Q Consensus 119 ~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~v~~l~~sp-----dg~~l~~~~--g~i~lwd~~~~~ 190 (612)
-|.|++|+|||+.|++|+.||+|++||.++|+++. .+.+|...|++++|.| ..++||+++ |.|+|||+..++
T Consensus 159 WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~ 238 (480)
T KOG0271|consen 159 WVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGT 238 (480)
T ss_pred EEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCce
Confidence 99999999999999999999999999999998765 5999999999999975 678999988 999999999999
Q ss_pred eEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEec------CCccCCC-
Q 007234 191 KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCID------NGGVDDA- 263 (612)
Q Consensus 191 ~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~- 263 (612)
++..+.||+.+|+|+.|-.+| ++++++ .|++|++|+...+... ..+..+...+..++.+ .++++|.
T Consensus 239 ~~~~lsgHT~~VTCvrwGG~g-liySgS-~DrtIkvw~a~dG~~~-----r~lkGHahwvN~lalsTdy~LRtgaf~~t~ 311 (480)
T KOG0271|consen 239 CVRTLSGHTASVTCVRWGGEG-LIYSGS-QDRTIKVWRALDGKLC-----RELKGHAHWVNHLALSTDYVLRTGAFDHTG 311 (480)
T ss_pred EEEEeccCccceEEEEEcCCc-eEEecC-CCceEEEEEccchhHH-----Hhhcccchheeeeeccchhhhhcccccccc
Confidence 999999999999999998666 677775 8999999999887643 2333333333333332 1112233
Q ss_pred ------------------------CcEEEEEecCCcEEEEECCCcc-ee---cccCCceeEeecccccCCCCcccchhhh
Q 007234 264 ------------------------GLYVLAISETGVCYIWYGQNIE-EL---RNTKATKILSSSEDVNSKSQKSATAAIF 315 (612)
Q Consensus 264 ------------------------~~~l~t~s~dg~i~iwd~~~~~-~~---~~~~~~~~~~~~~~~~s~~~~~~~~~i~ 315 (612)
+..+++|+.|+++.+|+....+ .+ ..++.....+. |+|+++ +|+
T Consensus 312 ~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~----fSPd~r----~IA 383 (480)
T KOG0271|consen 312 RKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVS----FSPDGR----YIA 383 (480)
T ss_pred ccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEE----ECCCcc----EEE
Confidence 3459999999999999965544 33 33333333333 899999 999
Q ss_pred cccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceeeecc
Q 007234 316 AAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNR 382 (612)
Q Consensus 316 ~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~~~~ 382 (612)
+|+||..+++|+|. ......++.+|-..|..++||.|.++| +|||.|.++++|++..+
T Consensus 384 SaSFDkSVkLW~g~--------tGk~lasfRGHv~~VYqvawsaDsRLl-VS~SkDsTLKvw~V~tk 441 (480)
T KOG0271|consen 384 SASFDKSVKLWDGR--------TGKFLASFRGHVAAVYQVAWSADSRLL-VSGSKDSTLKVWDVRTK 441 (480)
T ss_pred EeecccceeeeeCC--------CcchhhhhhhccceeEEEEeccCccEE-EEcCCCceEEEEEeeee
Confidence 99999988888732 222334788999999999999999999 99999999999999553
No 6
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2.2e-37 Score=281.58 Aligned_cols=281 Identities=16% Similarity=0.202 Sum_probs=249.5
Q ss_pred CcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccc
Q 007234 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (612)
Q Consensus 3 s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (612)
-..| .++.|++|.++++++|.||.+.|||..+...++-+.-....|..++|+|.
T Consensus 55 ~~Ki--~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPS------------------------ 108 (343)
T KOG0286|consen 55 LNKI--YAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPS------------------------ 108 (343)
T ss_pred ccce--eeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCC------------------------
Confidence 3566 45599999999999999999999999999999888888888888888887
Q ss_pred ccCCcEEEEEECCCcEEEEEcCCC--e---EEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEec
Q 007234 83 KLGSSLLVLGTGGGDVLALAVSAG--Q---LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA 157 (612)
Q Consensus 83 ~~~~~~l~~gs~~g~I~vwd~~~~--~---~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~ 157 (612)
+++++.|+.|+...||++.+. + .+.+.+.+|++.+.|+.|-+|+ .|+|+|.|.++.+||+++|+.+..|.+
T Consensus 109 ---g~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~g~~~~~f~G 184 (343)
T KOG0286|consen 109 ---GNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIETGQQTQVFHG 184 (343)
T ss_pred ---CCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEcccceEEEEecC
Confidence 999999999999999999865 2 3344457999999999999855 699999999999999999999999999
Q ss_pred CCCCeeEEEECC-CCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCcc
Q 007234 158 STKGISCMAVSS-DGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK 234 (612)
Q Consensus 158 ~~~~v~~l~~sp-dg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~ 234 (612)
|.+.|.++.++| +++.+++|+ +..++||++.+.+++.|.||.+.|+++.|.|+|.-+++++ +|+++++||++....
T Consensus 185 H~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGS-DD~tcRlyDlRaD~~ 263 (343)
T KOG0286|consen 185 HTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGS-DDATCRLYDLRADQE 263 (343)
T ss_pred CcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecC-CCceeEEEeecCCcE
Confidence 999999999999 999999998 8999999999999999999999999999999999999987 799999999999876
Q ss_pred ccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhh
Q 007234 235 QSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAI 314 (612)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i 314 (612)
. .++..+.....+..+.|+ ..|++|++|..|.++.+||.-.++.+
T Consensus 264 ~---a~ys~~~~~~gitSv~FS-----~SGRlLfagy~d~~c~vWDtlk~e~v--------------------------- 308 (343)
T KOG0286|consen 264 L---AVYSHDSIICGITSVAFS-----KSGRLLFAGYDDFTCNVWDTLKGERV--------------------------- 308 (343)
T ss_pred E---eeeccCcccCCceeEEEc-----ccccEEEeeecCCceeEeeccccceE---------------------------
Confidence 5 555555555667888888 89999999999999999996444332
Q ss_pred hcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeeccee
Q 007234 315 FAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY 378 (612)
Q Consensus 315 ~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~ 378 (612)
-.+.+|.+.|.++..+|||.-+ +|||-|..+|+|.
T Consensus 309 ----------------------------g~L~GHeNRvScl~~s~DG~av-~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 309 ----------------------------GVLAGHENRVSCLGVSPDGMAV-ATGSWDSTLRIWA 343 (343)
T ss_pred ----------------------------EEeeccCCeeEEEEECCCCcEE-EecchhHheeecC
Confidence 1566899999999999999999 9999999999994
No 7
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=8.5e-38 Score=316.18 Aligned_cols=492 Identities=17% Similarity=0.169 Sum_probs=341.2
Q ss_pred CCCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccc
Q 007234 1 MGSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (612)
Q Consensus 1 ~~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~ 80 (612)
+|.+|| +.++|+|.|..+|+|+.||.++|||+..+.+.+.|++|.+.+..+.|.+...
T Consensus 103 ~He~Pv--i~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~-------------------- 160 (775)
T KOG0319|consen 103 IHEAPV--ITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWN-------------------- 160 (775)
T ss_pred ccCCCe--EEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccc--------------------
Confidence 368899 6779999999999999999999999999999999999999999888887611
Q ss_pred ccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEe----
Q 007234 81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR---- 156 (612)
Q Consensus 81 ~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~---- 156 (612)
..+|++|..|+.+++||+.+..........|.+.|+++.|++|+..++++|.|..+.+||+.+.+...++.
T Consensus 161 -----~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~ 235 (775)
T KOG0319|consen 161 -----RWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYES 235 (775)
T ss_pred -----hhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhh
Confidence 45689999999999999997665223446799999999999999999999999999999885432211110
Q ss_pred --------------------------------------------------------------------------------
Q 007234 157 -------------------------------------------------------------------------------- 156 (612)
Q Consensus 157 -------------------------------------------------------------------------------- 156 (612)
T Consensus 236 ~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i 315 (775)
T KOG0319|consen 236 LESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTI 315 (775)
T ss_pred eeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEE
Confidence
Q ss_pred -----------------------------------------------cCCCCeeEEEECCCCCEEEEeC--CeEEEEEcC
Q 007234 157 -----------------------------------------------ASTKGISCMAVSSDGKMLATAA--GQLKTFNCS 187 (612)
Q Consensus 157 -----------------------------------------------~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~ 187 (612)
+|...|.++....+|-+|++++ .++++|.++
T Consensus 316 ~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~ 395 (775)
T KOG0319|consen 316 VKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLN 395 (775)
T ss_pred ehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEec
Confidence 3334455555445666777777 678888664
Q ss_pred CC----eeEEEEecCCCCEEEEEEeeCCc-EEEEEEcCCCeEEEEEcCCCccccceeeE----eecCCceeEEeEEecCC
Q 007234 188 DH----KKMQKFSGHPGAVRFMTFSDNGK-YVLSSAVGERYIALWRTDGVKKQSASCVL----AMEHPAVFMDCRCIDNG 258 (612)
Q Consensus 188 ~~----~~~~~~~~h~~~v~~l~~sp~~~-~l~s~s~~d~~i~vwd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 258 (612)
.+ -++....||.+.|.+++++..+. +|++++ .|+++++|++...+.......+ ....|...+.++.++
T Consensus 396 ~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS-~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia-- 472 (775)
T KOG0319|consen 396 NNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVS-QDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIA-- 472 (775)
T ss_pred CCcchhhhhhhhcccccccceeeecccCccEEEEec-CCceEEEecCCCcccccccceehhhHHHHhhcccccceEec--
Confidence 33 23455678999999999987664 666665 8999999999884333222233 334566677888887
Q ss_pred ccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCcc
Q 007234 259 GVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLL 338 (612)
Q Consensus 259 ~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~ 338 (612)
|+.++++|||.|++.++|+++....+....+++..+-+.. |++..+ .+++++.|.++++|. -..
T Consensus 473 ---~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~-Fs~~dq----~laT~SgD~TvKIW~--------is~ 536 (775)
T KOG0319|consen 473 ---PNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVS-FSKNDQ----LLATCSGDKTVKIWS--------IST 536 (775)
T ss_pred ---CCCceEEecccccceeeecccCceEEEEeeCCccceEEEE-eccccc----eeEeccCCceEEEEE--------ecc
Confidence 9999999999999999999998888777777766555554 788777 899999999888876 345
Q ss_pred CceEEEeeccCCCeEEEEecCCCceEeccccceeeecceeeecc--eeecccCCccccccCCCcccchhhhhhcccCCCC
Q 007234 339 KPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNR--VTALDRANAEDAVLPLPKILDSYDKKNRHQNLSS 416 (612)
Q Consensus 339 ~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (612)
+.+..++.+|...|..+.|-.+|+.| +|++.||.+++|++.+. ...+| ..+|+.+...... .
T Consensus 537 fSClkT~eGH~~aVlra~F~~~~~ql-iS~~adGliKlWnikt~eC~~tlD--~H~DrvWaL~~~~-------------~ 600 (775)
T KOG0319|consen 537 FSCLKTFEGHTSAVLRASFIRNGKQL-ISAGADGLIKLWNIKTNECEMTLD--AHNDRVWALSVSP-------------L 600 (775)
T ss_pred ceeeeeecCccceeEeeeeeeCCcEE-EeccCCCcEEEEeccchhhhhhhh--hccceeEEEeecC-------------c
Confidence 67777999999999999999999999 99999999999999654 44554 2234443221110 0
Q ss_pred CccccccccccchhhhhhhhccC--cc--cccccCCccCCHHHHHHhcCCCCCCCCCCCCchhhhhhhccc---c----c
Q 007234 417 DLDEVMTDVVDSESQAKFMEIKD--DK--VEVEADSQTVCMEDRLRSLGILSNKDDLLSNSALEATLFNGI---D----F 485 (612)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~e~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~~l---~----~ 485 (612)
+.....++.+..-..|++....+ .+ ...+..+.+.+++.-|.+. ++..|--++..|.... . +
T Consensus 601 ~~~~~tgg~Dg~i~~wkD~Te~~~~ee~~K~~eaieq~QeL~n~l~~~-------~~~~A~~LA~tLd~P~~~f~vi~~~ 673 (775)
T KOG0319|consen 601 LDMFVTGGGDGRIIFWKDVTEEEQNEEQEKREEAIEQEQELENLLSQK-------RYTKAFVLALTLDKPHLVFTVINAL 673 (775)
T ss_pred cceeEecCCCeEEEEeecCcHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------hhHHHHHhHhhccCchhHHHHHHHH
Confidence 11011111111111222221100 00 0001111122222222211 1111111222111111 2 2
Q ss_pred cccCChhHHHHhhhccChhhHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHhccc-ccCCcChHHHHHHHHHHHHhh
Q 007234 486 ETNIPVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNHGHH-LLSQESLTPMLSSLYKVFRSA 562 (612)
Q Consensus 486 ~~~~~~~~I~~ti~~Lp~~~~~~lL~~l~~~l~~~~~~~~~~~~W~~~ll~~H~~~-l~s~~~l~~~L~~l~~~l~~r 562 (612)
.+..++..++.+|++|.-....-||+++. .|+.++......++-|..+|+.|-.- |...|....++..|....++-
T Consensus 674 ~r~r~~e~l~~av~~L~~dq~~~Ll~~~~-~WnTnsk~c~vaQ~vL~~~l~~~~p~el~~~~g~~~~~e~l~PYtqRH 750 (775)
T KOG0319|consen 674 YRERDPEELGQAVFRLNEDQPEALLQFVV-KWNTNSKTCHVAQRVLYEILKRVDPEELVRWPGSGEVVEALLPYTQRH 750 (775)
T ss_pred HhcCCcHHHHHHHHHhhhhhHHHHHHHHH-HhcCCcchhHHHHHHHHHHHhccChHHhhcccchHHHHHhhhhHHHHH
Confidence 33457889999999999999999999999 89998887777887888888876543 556677777777777666553
No 8
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=7.3e-34 Score=257.20 Aligned_cols=287 Identities=18% Similarity=0.250 Sum_probs=236.0
Q ss_pred CCcccceeEEEEcCC-CCEEEEEeCCCcEEEEECC-----CCcEEEEeeccCCccccccccccccccccccceeEEEeee
Q 007234 2 GSSNIRDILTSFSPA-LDYFAICSGDARIKIWDTL-----KGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLS 75 (612)
Q Consensus 2 ~s~~V~~l~~~fspd-g~~las~s~dg~i~iwd~~-----~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~ 75 (612)
|+..|..+ +..+. .+.+.+++.|.++.+|++. .|..++.|++|...+.....+.+
T Consensus 14 h~d~Vt~l--a~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~d----------------- 74 (315)
T KOG0279|consen 14 HTDWVTAL--AIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSD----------------- 74 (315)
T ss_pred CCceEEEE--EeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccC-----------------
Confidence 45667666 66665 5688899999999999764 56678899999888887777777
Q ss_pred cccccccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEE
Q 007234 76 VDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKF 155 (612)
Q Consensus 76 ~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~ 155 (612)
+++.++++.||.+++||+.+|+..+++ .+|...|.+++|+||++.+++||.|.+|++||+. +.+..++
T Consensus 75 ----------g~~alS~swD~~lrlWDl~~g~~t~~f-~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~-g~ck~t~ 142 (315)
T KOG0279|consen 75 ----------GNFALSASWDGTLRLWDLATGESTRRF-VGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTL-GVCKYTI 142 (315)
T ss_pred ----------CceEEeccccceEEEEEecCCcEEEEE-EecCCceEEEEecCCCceeecCCCcceeeeeeec-ccEEEEE
Confidence 899999999999999999999888776 6899999999999999999999999999999975 5555665
Q ss_pred ecC--CCCeeEEEECCC--CCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEc
Q 007234 156 RAS--TKGISCMAVSSD--GKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRT 229 (612)
Q Consensus 156 ~~~--~~~v~~l~~spd--g~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~ 229 (612)
..+ .+.|+|++|+|+ ..++++++ ++|++||+++.+....+.||.+.++.+.+||||...++++ .||.+.+||+
T Consensus 143 ~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGg-kdg~~~LwdL 221 (315)
T KOG0279|consen 143 HEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGG-KDGEAMLWDL 221 (315)
T ss_pred ecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCC-CCceEEEEEc
Confidence 544 679999999997 67888888 8999999999999999999999999999999999999987 8999999999
Q ss_pred CCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcc
Q 007234 230 DGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKS 309 (612)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 309 (612)
+.++ +.+.+++.. .+..++|+ |+...|+.+... .|+|||++++..+....+..... ..+
T Consensus 222 ~~~k-----~lysl~a~~-~v~sl~fs-----pnrywL~~at~~-sIkIwdl~~~~~v~~l~~d~~g~--------s~~- 280 (315)
T KOG0279|consen 222 NEGK-----NLYSLEAFD-IVNSLCFS-----PNRYWLCAATAT-SIKIWDLESKAVVEELKLDGIGP--------SSK- 280 (315)
T ss_pred cCCc-----eeEeccCCC-eEeeEEec-----CCceeEeeccCC-ceEEEeccchhhhhhcccccccc--------ccc-
Confidence 9987 346665554 55677787 887776666554 59999999988776544331111 000
Q ss_pred cchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceee
Q 007234 310 ATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (612)
Q Consensus 310 ~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~ 379 (612)
...-...+++||+||..| ++|-.|+.+++|.+
T Consensus 281 -------------------------------------~~~~~clslaws~dG~tL-f~g~td~~irv~qv 312 (315)
T KOG0279|consen 281 -------------------------------------AGDPICLSLAWSADGQTL-FAGYTDNVIRVWQV 312 (315)
T ss_pred -------------------------------------cCCcEEEEEEEcCCCcEE-EeeecCCcEEEEEe
Confidence 001135789999999999 99999999999987
No 9
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=4.2e-34 Score=284.53 Aligned_cols=483 Identities=31% Similarity=0.405 Sum_probs=331.3
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccc-----------cccc
Q 007234 14 SPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDR-----------KKKR 82 (612)
Q Consensus 14 spdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~-----------~~~~ 82 (612)
+|.+.|+|....||.++|||+.+++..++|. +..+++..+++..|.-.-. ..+.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~---------------p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~ 66 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFA---------------PIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKA 66 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeec---------------cchhccCcceeEEEEEEeccchHHHHhHHHHhhc
Confidence 4667899999999999999999999999886 3355666777777763221 1122
Q ss_pred ccCCcEEEEEECCCcEEEEEcCCCeEEEEec-cCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCC
Q 007234 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLS-DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG 161 (612)
Q Consensus 83 ~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~-~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~ 161 (612)
..+...++.|...|.|.+|++..|+..+.+. ..|.+.|.++.++.+-..|.+++.|+.+..|+...++.++.+++....
T Consensus 67 s~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~ 146 (541)
T KOG4547|consen 67 SLDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPL 146 (541)
T ss_pred cCCceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCc
Confidence 3356789999999999999999999988887 789999999999998889999999999999999999999999999999
Q ss_pred eeEEEECCCCCEEEEeCCeEEEEEcCCCeeEEEEecCCCCEEEEEEeeC-----CcEEEEEEcCCCeEEEEEcCC-Cccc
Q 007234 162 ISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDN-----GKYVLSSAVGERYIALWRTDG-VKKQ 235 (612)
Q Consensus 162 v~~l~~spdg~~l~~~~g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~-----~~~l~s~s~~d~~i~vwd~~~-~~~~ 235 (612)
+.+++++|||+.+++++++|++||+++++.+..|+||.++|+++.|..+ |.+++++...++.+.+|-... .+..
T Consensus 147 ~~sl~is~D~~~l~~as~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~~kkk 226 (541)
T KOG4547|consen 147 VSSLCISPDGKILLTASRQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKEDKKK 226 (541)
T ss_pred cceEEEcCCCCEEEeccceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEcccccc
Confidence 9999999999999999999999999999999999999999999999877 788888776778899998876 3334
Q ss_pred cceeeEeecCCceeEEeEEecCCccCCCCc--EEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchh
Q 007234 236 SASCVLAMEHPAVFMDCRCIDNGGVDDAGL--YVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAA 313 (612)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 313 (612)
...+.+..++.........- .++. +.++.+..+-+..|...+...+-..+..+....... .++ -
T Consensus 227 s~~~sl~~~dipv~~ds~~~------ed~~~~l~lAst~~~g~v~~~~~nl~~l~~~~~~kv~~~~~~-~s~-------g 292 (541)
T KOG4547|consen 227 SLSCSLTVPDIPVTSDSGLL------EDGTIPLVLASTLIPGIVHLKLSNLIILLHKKIVKVNGYNAD-SSK-------G 292 (541)
T ss_pred hhheeeccCCCCeEeccccc------cccccceEEeeeccCceeeeccccHHHHhcCccccccceeee-ccc-------c
Confidence 45566666666655544433 3333 444444444444444444443333333332222111 111 2
Q ss_pred hhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEE-ecCCCceEeccccceeeecceeeecceeecccCCcc
Q 007234 314 IFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLN-CSQDGVLLPMSQSLLKSKRGRYVQNRVTALDRANAE 392 (612)
Q Consensus 314 i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~-~S~dg~~l~~s~s~d~~~~~w~~~~~~~~~~~~~~~ 392 (612)
++++.+... .-+.++.+|...++.++++....+.-..+. ..-.|... ++...-....-..+.|....+. +
T Consensus 293 ~~a~~~~~~----~~~~~l~~g~~~~ps~~~vsln~~~~l~l~~R~l~~~~~-~~~~~~k~~~rqv~~n~~~k~~----~ 363 (541)
T KOG4547|consen 293 FLAALFGID----KAHALLAYGSLVNPSFVRVSLNLGQKLHLMDRDLSGSGK-LKLVTSKEGKRQVVLNSVAKLG----E 363 (541)
T ss_pred hhhhhcccc----hhhhhhhcccccCchhhhhhhhhcchhhhhhhhccCCcc-cceeeeecccceeecchhhhhc----c
Confidence 444444321 135667788877777766654332222111 11111111 0000000000000000000000 0
Q ss_pred ccccCCCcccchhhhhhcccCCCCCccccccccccchhhhhhhhccCcccccccCCccCCHHHHHHhcCCCCCCCC---C
Q 007234 393 DAVLPLPKILDSYDKKNRHQNLSSDLDEVMTDVVDSESQAKFMEIKDDKVEVEADSQTVCMEDRLRSLGILSNKDD---L 469 (612)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~l~~l~~~~~~~~---~ 469 (612)
+ . . ..+..+ +...++. . ......|..+++|+.++.......+ .
T Consensus 364 ~--~----~----~q~~~p-------------------~~~~l~v---~--~~~g~iEv~~earl~~l~i~~~~~~~k~~ 409 (541)
T KOG4547|consen 364 A--E----V----IQEEPP-------------------LTEDLPV---L--TKGGDIEVSTEARLSALDINLTSNADKSD 409 (541)
T ss_pred h--h----h----hcccCc-------------------chhcchh---h--hcCCcceeeehhhhhhcccccccccchhh
Confidence 0 0 0 000000 0000000 0 1234567888999999877643321 1
Q ss_pred CCCchhhhhhhccc---------cccccCChhHHHHhhhccChhhHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHhcc
Q 007234 470 LSNSALEATLFNGI---------DFETNIPVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNHGH 540 (612)
Q Consensus 470 ~~~~~~~~~L~~~l---------~~~~~~~~~~I~~ti~~Lp~~~~~~lL~~l~~~l~~~~~~~~~~~~W~~~ll~~H~~ 540 (612)
......+..|+|+| .++..+++..|+.|+.++|++++.+||+.++.||++++.+.+.+++|+++++..|++
T Consensus 410 ~~tll~s~~l~Q~L~srd~~~~~~Vl~s~d~~lik~tv~rme~st~~pll~ela~rlq~~~~~~~~~l~w~k~~l~~h~~ 489 (541)
T KOG4547|consen 410 ESTLLASVSLNQALSSRDSHILTDVLISRDEELIKSTVLRMEESTAPPLLEELAPRLQSRASRGRILLVWLKTRLTSHNS 489 (541)
T ss_pred hhccchhhhhhhhhcccccccchhhhccCChHHHHHHHhhcChhhccchhccchhhhccccccCchhhhhhhhhhhcccc
Confidence 22334567788888 577888999999999999999999999999999999999999999999999999999
Q ss_pred cccCCcChHHHHHHHHHHHHhhcccccc
Q 007234 541 HLLSQESLTPMLSSLYKVFRSASCKKTW 568 (612)
Q Consensus 541 ~l~s~~~l~~~L~~l~~~l~~r~~~~~~ 568 (612)
|||+.|+....|..+.+...++++.-+.
T Consensus 490 yl~sv~~~~~~l~~~~~~~~~~ae~~~~ 517 (541)
T KOG4547|consen 490 YLSSVPDQLETLSGKMQKDLRTAEQLGH 517 (541)
T ss_pred eeecCcchhhHHHHHHHHHHHHHHHHHH
Confidence 9999999777788888877778777333
No 10
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.7e-34 Score=270.02 Aligned_cols=280 Identities=15% Similarity=0.258 Sum_probs=249.7
Q ss_pred CcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccc
Q 007234 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (612)
Q Consensus 3 s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (612)
..+|..+ -|.|+-..+++++.|++|++||..+|++...+++|...+..+.|...
T Consensus 108 r~~vt~v--~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~------------------------ 161 (406)
T KOG0295|consen 108 RSSVTRV--IFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDAS------------------------ 161 (406)
T ss_pred ccceeee--eeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecC------------------------
Confidence 3567555 89999999999999999999999999999999999988888888776
Q ss_pred ccCCcEEEEEECCCcEEEEEcCCC-eEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCC
Q 007234 83 KLGSSLLVLGTGGGDVLALAVSAG-QLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG 161 (612)
Q Consensus 83 ~~~~~~l~~gs~~g~I~vwd~~~~-~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~ 161 (612)
+.++++++.|-.+++||..+- +++ +...+|...|.++.|-|.|.++++|+.|.+|+.|++.+|.++.+|.+|...
T Consensus 162 ---Gk~l~tcSsDl~~~LWd~~~~~~c~-ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ew 237 (406)
T KOG0295|consen 162 ---GKYLATCSSDLSAKLWDFDTFFRCI-KSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEW 237 (406)
T ss_pred ---ccEEEecCCccchhheeHHHHHHHH-HHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHh
Confidence 889999999999999999873 444 334689999999999999999999999999999999999999999999999
Q ss_pred eeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeC---------------CcEEEEEEcCCCeE
Q 007234 162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDN---------------GKYVLSSAVGERYI 224 (612)
Q Consensus 162 v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~---------------~~~l~s~s~~d~~i 224 (612)
|..++.+.||.++++++ .++++|-+.++++...+.+|+.+|-+++|.|. +.++.+++ .|++|
T Consensus 238 vr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~S-rDktI 316 (406)
T KOG0295|consen 238 VRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGS-RDKTI 316 (406)
T ss_pred EEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeec-ccceE
Confidence 99999999999999999 79999999999999999999999999999763 24677765 89999
Q ss_pred EEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccC
Q 007234 225 ALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNS 304 (612)
Q Consensus 225 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s 304 (612)
++||+.++. |++++..+...++.+.|+ |.|+||+++..|+++++||+++++.+.
T Consensus 317 k~wdv~tg~-----cL~tL~ghdnwVr~~af~-----p~Gkyi~ScaDDktlrvwdl~~~~cmk---------------- 370 (406)
T KOG0295|consen 317 KIWDVSTGM-----CLFTLVGHDNWVRGVAFS-----PGGKYILSCADDKTLRVWDLKNLQCMK---------------- 370 (406)
T ss_pred EEEeccCCe-----EEEEEecccceeeeeEEc-----CCCeEEEEEecCCcEEEEEeccceeee----------------
Confidence 999999996 678999999999999998 999999999999999999998887654
Q ss_pred CCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceee
Q 007234 305 KSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (612)
Q Consensus 305 ~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~ 379 (612)
++..|..+|.++.|..+-.++ +|||-|.+.++|+.
T Consensus 371 ---------------------------------------~~~ah~hfvt~lDfh~~~p~V-vTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 371 ---------------------------------------TLEAHEHFVTSLDFHKTAPYV-VTGSVDQTVKVWEC 405 (406)
T ss_pred ---------------------------------------ccCCCcceeEEEecCCCCceE-Eeccccceeeeeec
Confidence 223456678888888888898 99999999999964
No 11
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=2.1e-33 Score=249.97 Aligned_cols=272 Identities=14% Similarity=0.205 Sum_probs=220.2
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEECCCc
Q 007234 18 DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGD 97 (612)
Q Consensus 18 ~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~ 97 (612)
-+||++|.|.+||+|...+|.|..+++...+.|+.+...++ +..|+ +.....
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpd---------------------------k~~LA-aa~~qh 62 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPD---------------------------KKDLA-AAGNQH 62 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCC---------------------------cchhh-hccCCe
Confidence 48999999999999999999999999877777776666655 44444 445678
Q ss_pred EEEEEcCCCeE--EEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEEEECCCCCEEE
Q 007234 98 VLALAVSAGQL--KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLA 175 (612)
Q Consensus 98 I~vwd~~~~~~--~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~ 175 (612)
|++||++++.. +..+ ++|+..|+++.|..+|+.+++||.||++++||++...+.+.++ +..+|+++..+|+...|+
T Consensus 63 vRlyD~~S~np~Pv~t~-e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLi 140 (311)
T KOG0315|consen 63 VRLYDLNSNNPNPVATF-EGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELI 140 (311)
T ss_pred eEEEEccCCCCCceeEE-eccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEE
Confidence 99999998865 4444 7899999999999999999999999999999999977777776 568999999999999999
Q ss_pred EeC--CeEEEEEcCCCeeEEEE-ecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCcccc-ceeeEeec-CCceeE
Q 007234 176 TAA--GQLKTFNCSDHKKMQKF-SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS-ASCVLAME-HPAVFM 250 (612)
Q Consensus 176 ~~~--g~i~lwd~~~~~~~~~~-~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~-~~~~~~~~-~~~~~~ 250 (612)
+|+ |.|++||+.+..+...+ +....+|.++...|||++++.+. ..|.+++|++-.....+ ..++..+. |...++
T Consensus 141 s~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~n-nkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il 219 (311)
T KOG0315|consen 141 SGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAAN-NKGNCYVWRLLNHQTASELEPVHKFQAHNGHIL 219 (311)
T ss_pred eecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEec-CCccEEEEEccCCCccccceEhhheecccceEE
Confidence 998 99999999988766555 34456899999999999998886 68999999997754321 12233344 444444
Q ss_pred EeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhcccccceecCCCceE
Q 007234 251 DCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHT 330 (612)
Q Consensus 251 ~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~ 330 (612)
. +-++ ||+++|++++.|.+++||+.++. ++
T Consensus 220 ~-C~lS-----Pd~k~lat~ssdktv~iwn~~~~--~k------------------------------------------ 249 (311)
T KOG0315|consen 220 R-CLLS-----PDVKYLATCSSDKTVKIWNTDDF--FK------------------------------------------ 249 (311)
T ss_pred E-EEEC-----CCCcEEEeecCCceEEEEecCCc--ee------------------------------------------
Confidence 4 4465 99999999999999999987654 10
Q ss_pred EEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceeeec
Q 007234 331 FVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN 381 (612)
Q Consensus 331 ~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~~~ 381 (612)
.-..+.+|...+|.++||.||.|| +|||.|...|+|++..
T Consensus 250 ----------le~~l~gh~rWvWdc~FS~dg~Yl-vTassd~~~rlW~~~~ 289 (311)
T KOG0315|consen 250 ----------LELVLTGHQRWVWDCAFSADGEYL-VTASSDHTARLWDLSA 289 (311)
T ss_pred ----------eEEEeecCCceEEeeeeccCccEE-EecCCCCceeeccccc
Confidence 001456777799999999999999 9999999999999843
No 12
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=3.6e-32 Score=265.50 Aligned_cols=362 Identities=17% Similarity=0.174 Sum_probs=262.0
Q ss_pred CcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCc--EEEEeeccCCccccccccccccc----ccc-ccceeEEEeee
Q 007234 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ--VQTEFADIASTETTSLYGNRLER----EHL-SVDYTCMKWLS 75 (612)
Q Consensus 3 s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~s~~~~~----~~~-~~~~~~~~w~~ 75 (612)
+.+++.. .|||.|.|+|+|...|+|||||+...+ +..+|+...+++..+.|+.+-.. |.- ..-.....|.+
T Consensus 59 ~~~vtVA--kySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DS 136 (603)
T KOG0318|consen 59 AHQVTVA--KYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDS 136 (603)
T ss_pred cceeEEE--EeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecC
Confidence 4455434 999999999999999999999987633 45678888999999999876211 111 11223345554
Q ss_pred ccccc-------------ccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEE
Q 007234 76 VDRKK-------------KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVC 142 (612)
Q Consensus 76 ~~~~~-------------~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~ 142 (612)
.+... .++...-.+++|+.|+.|.+|+=.--+....+ ..|..-|+|+.|+|||..|++++.||+|.
T Consensus 137 G~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~-r~HskFV~~VRysPDG~~Fat~gsDgki~ 215 (603)
T KOG0318|consen 137 GNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSF-REHSKFVNCVRYSPDGSRFATAGSDGKIY 215 (603)
T ss_pred CCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecc-cccccceeeEEECCCCCeEEEecCCccEE
Confidence 33110 11222557999999999999986554444444 56999999999999999999999999999
Q ss_pred EEECCCCceeEEEe---cCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEE------------------------
Q 007234 143 EIDPLTGSLLGKFR---ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQ------------------------ 193 (612)
Q Consensus 143 iwd~~~~~~~~~~~---~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~------------------------ 193 (612)
+||=.+|+.+..+. +|.+.|.+++|+||++.+++++ .+++|||+.+.++++
T Consensus 216 iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lIt 295 (603)
T KOG0318|consen 216 IYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLIT 295 (603)
T ss_pred EEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEE
Confidence 99999999999998 7999999999999999999998 799999997665443
Q ss_pred -------------------EEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccc------eee--------
Q 007234 194 -------------------KFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA------SCV-------- 240 (612)
Q Consensus 194 -------------------~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~------~~~-------- 240 (612)
.+.||...|+++..+|++++|++++ .||.|.-|+..++..... ..+
T Consensus 296 VSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~Sgs-yDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~ 374 (603)
T KOG0318|consen 296 VSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGS-YDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASES 374 (603)
T ss_pred EEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeec-cCceEEEEecCCccccccccccccceEEEEeecCC
Confidence 3458999999999999999999997 799999999876542100 000
Q ss_pred ---E------------------------eecCCcee--------EEeE-Eec---------------------CCccCCC
Q 007234 241 ---L------------------------AMEHPAVF--------MDCR-CID---------------------NGGVDDA 263 (612)
Q Consensus 241 ---~------------------------~~~~~~~~--------~~~~-~~~---------------------~~~~~~~ 263 (612)
+ .+.++... +..+ +.+ ...++|+
T Consensus 375 ~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~ 454 (603)
T KOG0318|consen 375 GELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPD 454 (603)
T ss_pred CcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCC
Confidence 0 00000000 0000 000 0134699
Q ss_pred CcEEEEEecCCcEEEEECCCcceecc--cCCceeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCce
Q 007234 264 GLYVLAISETGVCYIWYGQNIEELRN--TKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPS 341 (612)
Q Consensus 264 ~~~l~t~s~dg~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~ 341 (612)
+..+++|+.||.|++|.+..++.... ...++-.++... ++|+++ +++++...+.+ ++.+-...+..
T Consensus 455 ~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~va-ySpd~~----yla~~Da~rkv-------v~yd~~s~~~~ 522 (603)
T KOG0318|consen 455 GSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVA-YSPDGA----YLAAGDASRKV-------VLYDVASREVK 522 (603)
T ss_pred CCEEEEecccceEEEEEecCCcccceeeeecccCCceEEE-ECCCCc----EEEEeccCCcE-------EEEEcccCcee
Confidence 99999999999999999877654322 112222223222 899988 88888875533 33333333344
Q ss_pred EEEeeccCCCeEEEEecCCCceEeccccceeeecceeeec
Q 007234 342 FQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN 381 (612)
Q Consensus 342 ~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~~~ 381 (612)
.....+|+..|.+++|||+.+.+ +|||-|..+.+|++.+
T Consensus 523 ~~~w~FHtakI~~~aWsP~n~~v-ATGSlDt~Viiysv~k 561 (603)
T KOG0318|consen 523 TNRWAFHTAKINCVAWSPNNKLV-ATGSLDTNVIIYSVKK 561 (603)
T ss_pred cceeeeeeeeEEEEEeCCCceEE-EeccccceEEEEEccC
Confidence 55677899999999999999999 9999999999999854
No 13
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=9.4e-35 Score=276.70 Aligned_cols=238 Identities=16% Similarity=0.203 Sum_probs=214.6
Q ss_pred CCcccceeEEEEcCC--CCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccc
Q 007234 2 GSSNIRDILTSFSPA--LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK 79 (612)
Q Consensus 2 ~s~~V~~l~~~fspd--g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~ 79 (612)
|.+.|. ++.|+|. +.-+|+|+.||++++|++.+...+..+.+|...|....|.++
T Consensus 216 H~~~v~--~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPs--------------------- 272 (459)
T KOG0272|consen 216 HTSRVG--AAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPS--------------------- 272 (459)
T ss_pred ccccee--eEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCC---------------------
Confidence 345664 4599997 568999999999999999999999999999888888888877
Q ss_pred cccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCC
Q 007234 80 KKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST 159 (612)
Q Consensus 80 ~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~ 159 (612)
|++|++++-|.+-++||+.++..+.. ..||...|.+++|+|||..++|||.|..-++||+++|+++..+.+|.
T Consensus 273 ------G~~L~TasfD~tWRlWD~~tk~ElL~-QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~ 345 (459)
T KOG0272|consen 273 ------GKFLGTASFDSTWRLWDLETKSELLL-QEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHI 345 (459)
T ss_pred ------CceeeecccccchhhcccccchhhHh-hcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccc
Confidence 99999999999999999999988743 47999999999999999999999999999999999999999999999
Q ss_pred CCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEee-CCcEEEEEEcCCCeEEEEEcCCCcccc
Q 007234 160 KGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSD-NGKYVLSSAVGERYIALWRTDGVKKQS 236 (612)
Q Consensus 160 ~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp-~~~~l~s~s~~d~~i~vwd~~~~~~~~ 236 (612)
.+|.+++|+|+|..||+|+ ++++|||++..+.+.++++|.+-|+.+.|+| .|.+|++++ .|+++++|...+..+.
T Consensus 346 k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~Tas-yD~t~kiWs~~~~~~~- 423 (459)
T KOG0272|consen 346 KEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTAS-YDNTVKIWSTRTWSPL- 423 (459)
T ss_pred cceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcc-cCcceeeecCCCcccc-
Confidence 9999999999999999999 8999999999999999999999999999999 677888887 7999999999888743
Q ss_pred ceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEE
Q 007234 237 ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY 280 (612)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd 280 (612)
..+..+..-+.++.++ +|+.++++++.|+++++|.
T Consensus 424 ----ksLaGHe~kV~s~Dis-----~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 424 ----KSLAGHEGKVISLDIS-----PDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred ----hhhcCCccceEEEEec-----cCCceEEEeccCceeeecc
Confidence 5556666666667776 9999999999999999995
No 14
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=2.2e-34 Score=272.96 Aligned_cols=281 Identities=14% Similarity=0.177 Sum_probs=232.0
Q ss_pred cccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccc
Q 007234 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (612)
Q Consensus 4 ~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (612)
-+|..+ .|.|+|+.|++|+..|.+.+|+..+......++.|.+.|. ++.|.+.
T Consensus 97 c~V~~v--~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr------------------~m~ws~~------- 149 (464)
T KOG0284|consen 97 CPVNVV--RWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVR------------------TMKWSHN------- 149 (464)
T ss_pred cceeeE--EEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccce------------------eEEEccC-------
Confidence 367666 9999999999999999999999854443333455555555 4445443
Q ss_pred cCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCee
Q 007234 84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGIS 163 (612)
Q Consensus 84 ~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~ 163 (612)
+..+++|+.+|.|++|++..+... .+...|...|++++|+|+...|++||.||+|++||....+..+.+.+|...|.
T Consensus 150 --g~wmiSgD~gG~iKyWqpnmnnVk-~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVk 226 (464)
T KOG0284|consen 150 --GTWMISGDKGGMIKYWQPNMNNVK-IIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVK 226 (464)
T ss_pred --CCEEEEcCCCceEEecccchhhhH-HhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcc
Confidence 889999999999999999877664 33344569999999999999999999999999999999999999999999999
Q ss_pred EEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeE
Q 007234 164 CMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVL 241 (612)
Q Consensus 164 ~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~ 241 (612)
|+.|+|...++++++ +.|++||.+++.++.++.+|...|..+.|+|++++|+++| .|..++++|+++-+.. +
T Consensus 227 svdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~s-kD~~~kv~DiR~mkEl-----~ 300 (464)
T KOG0284|consen 227 SVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGS-KDQSCKVFDIRTMKEL-----F 300 (464)
T ss_pred eeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEcc-CCceEEEEehhHhHHH-----H
Confidence 999999999999999 8999999999999999999999999999999999999997 8999999999965533 4
Q ss_pred eecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhcccccc
Q 007234 242 AMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQD 321 (612)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~ 321 (612)
....+...+..+.+.+ -...+|.+|+.||.|..|.+...+.+..
T Consensus 301 ~~r~Hkkdv~~~~WhP----~~~~lftsgg~Dgsvvh~~v~~~~p~~~-------------------------------- 344 (464)
T KOG0284|consen 301 TYRGHKKDVTSLTWHP----LNESLFTSGGSDGSVVHWVVGLEEPLGE-------------------------------- 344 (464)
T ss_pred Hhhcchhhheeecccc----ccccceeeccCCCceEEEeccccccccC--------------------------------
Confidence 5554555555565653 3457899999999999998762222110
Q ss_pred eecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceee
Q 007234 322 IVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (612)
Q Consensus 322 ~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~ 379 (612)
--..|...|++++|.|=|..| ++||.|+++|+|..
T Consensus 345 ----------------------i~~AHd~~iwsl~~hPlGhil-~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 345 ----------------------IPPAHDGEIWSLAYHPLGHIL-ATGSNDRTVRFWTR 379 (464)
T ss_pred ----------------------CCcccccceeeeeccccceeE-eecCCCcceeeecc
Confidence 112477799999999999999 99999999999975
No 15
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.3e-32 Score=247.57 Aligned_cols=243 Identities=16% Similarity=0.195 Sum_probs=204.8
Q ss_pred CcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccc
Q 007234 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (612)
Q Consensus 3 s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (612)
+--|..+ +.++||++.++++.|+++++||+.+|+..+.|.+|...|.+.+|+++
T Consensus 63 sH~v~dv--~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~d------------------------ 116 (315)
T KOG0279|consen 63 SHFVSDV--VLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTD------------------------ 116 (315)
T ss_pred ceEecce--EEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCC------------------------
Confidence 3456666 99999999999999999999999999999999999999998888888
Q ss_pred ccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecC--CCEEEEEecCCcEEEEECCCCceeEEEecCCC
Q 007234 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATH--GSCIYSAGADGMVCEIDPLTGSLLGKFRASTK 160 (612)
Q Consensus 83 ~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~--~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~ 160 (612)
++.|++|+.|.+|++||+..+.........|.+-|+|++|+|+ ..+++++|.|++|++||+++.+....+.+|.+
T Consensus 117 ---n~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~ 193 (315)
T KOG0279|consen 117 ---NRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSG 193 (315)
T ss_pred ---CceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccc
Confidence 8899999999999999998776664444445889999999997 78899999999999999999999999999999
Q ss_pred CeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccce
Q 007234 161 GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS 238 (612)
Q Consensus 161 ~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~ 238 (612)
.++.+++||||.++++|+ |.+.+||++.++.+..+. |...|.+++|+|+...|+.+ .+..|+|||+.++......
T Consensus 194 ~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnrywL~~a--t~~sIkIwdl~~~~~v~~l 270 (315)
T KOG0279|consen 194 YVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNRYWLCAA--TATSIKIWDLESKAVVEEL 270 (315)
T ss_pred cEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc-CCCeEeeEEecCCceeEeec--cCCceEEEeccchhhhhhc
Confidence 999999999999999998 899999999999988875 88999999999988666654 4667999999987654110
Q ss_pred eeEe----ecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECC
Q 007234 239 CVLA----MEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (612)
Q Consensus 239 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~ 282 (612)
.... ..........++|+ +||..|++|-.|+.|++|.+.
T Consensus 271 ~~d~~g~s~~~~~~~clslaws-----~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 271 KLDGIGPSSKAGDPICLSLAWS-----ADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred cccccccccccCCcEEEEEEEc-----CCCcEEEeeecCCcEEEEEee
Confidence 0000 11112233345555 899999999999999999764
No 16
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.2e-32 Score=256.73 Aligned_cols=284 Identities=14% Similarity=0.210 Sum_probs=242.5
Q ss_pred ccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccccc
Q 007234 5 NIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (612)
Q Consensus 5 ~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (612)
=||++ ++.|-+++|++|+.|++++|||+.+|++..++.+|...+..+.++..
T Consensus 153 WVr~v--avdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~r-------------------------- 204 (460)
T KOG0285|consen 153 WVRSV--AVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKR-------------------------- 204 (460)
T ss_pred eEEEE--eeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeeccc--------------------------
Confidence 36655 99999999999999999999999999999999999998888888876
Q ss_pred CCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeE
Q 007234 85 GSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISC 164 (612)
Q Consensus 85 ~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~ 164 (612)
..++++++.|+.|+-||++.++.++.+ .+|-+.|.|++.+|.-..|++|+.|.++++||+++...+..+.+|..+|.+
T Consensus 205 -HpYlFs~gedk~VKCwDLe~nkvIR~Y-hGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~ 282 (460)
T KOG0285|consen 205 -HPYLFSAGEDKQVKCWDLEYNKVIRHY-HGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVAS 282 (460)
T ss_pred -CceEEEecCCCeeEEEechhhhhHHHh-ccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCccee
Confidence 778999999999999999999999777 689999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEe
Q 007234 165 MAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLA 242 (612)
Q Consensus 165 l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~ 242 (612)
+.+.|-...+++|+ ++|++||++.|+....+..|...|.+++.+|....+++++ .| .|+-|++..+... ..
T Consensus 283 V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas-~d-nik~w~~p~g~f~-----~n 355 (460)
T KOG0285|consen 283 VMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASAS-PD-NIKQWKLPEGEFL-----QN 355 (460)
T ss_pred EEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccC-Cc-cceeccCCccchh-----hc
Confidence 99999888999998 8999999999999999999999999999999998888876 45 6999999988744 34
Q ss_pred ecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhcccccce
Q 007234 243 MEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDI 322 (612)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~ 322 (612)
+..+..++..+... . ..++++|+..|.|.+||.++|-..+..+.. +--|+.+
T Consensus 356 lsgh~~iintl~~n-----s-D~v~~~G~dng~~~fwdwksg~nyQ~~~t~--------------------vqpGSl~-- 407 (460)
T KOG0285|consen 356 LSGHNAIINTLSVN-----S-DGVLVSGGDNGSIMFWDWKSGHNYQRGQTI--------------------VQPGSLE-- 407 (460)
T ss_pred cccccceeeeeeec-----c-CceEEEcCCceEEEEEecCcCccccccccc--------------------ccCCccc--
Confidence 55666677777664 3 467899999999999999888654322111 0011111
Q ss_pred ecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceee
Q 007234 323 VKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (612)
Q Consensus 323 ~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~ 379 (612)
....|.+.+|...|.-| +||..|++|++|.-
T Consensus 408 -------------------------sEagI~as~fDktg~rl-it~eadKtIk~~ke 438 (460)
T KOG0285|consen 408 -------------------------SEAGIFASCFDKTGSRL-ITGEADKTIKMYKE 438 (460)
T ss_pred -------------------------cccceeEEeecccCceE-EeccCCcceEEEec
Confidence 11257788899999999 99999999999975
No 17
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=7.9e-33 Score=283.37 Aligned_cols=238 Identities=14% Similarity=0.213 Sum_probs=210.1
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEECCCCc-------------------------------EEEEeeccCCccccccccc
Q 007234 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQ-------------------------------VQTEFADIASTETTSLYGN 57 (612)
Q Consensus 9 l~~~fspdg~~las~s~dg~i~iwd~~~~~-------------------------------~~~~~~~~~~~~~~~~~s~ 57 (612)
.|+.||+|+.+||.|..|..|++|.+...+ ...++.+|.++|....|++
T Consensus 382 ~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsP 461 (707)
T KOG0263|consen 382 TCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSP 461 (707)
T ss_pred eeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeeecc
Confidence 577999999999999999999999987422 1123445555555555555
Q ss_pred cccccccccceeEEEeeecccccccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEec
Q 007234 58 RLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA 137 (612)
Q Consensus 58 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~ 137 (612)
+ .++|++++.|++|++|.+.+..++..+ .+|..+|+++.|+|.|-+|+|||.
T Consensus 462 d---------------------------~rfLlScSED~svRLWsl~t~s~~V~y-~GH~~PVwdV~F~P~GyYFatas~ 513 (707)
T KOG0263|consen 462 D---------------------------RRFLLSCSEDSSVRLWSLDTWSCLVIY-KGHLAPVWDVQFAPRGYYFATASH 513 (707)
T ss_pred c---------------------------ccceeeccCCcceeeeecccceeEEEe-cCCCcceeeEEecCCceEEEecCC
Confidence 5 889999999999999999999998777 599999999999999999999999
Q ss_pred CCcEEEEECCCCceeEEEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEE
Q 007234 138 DGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVL 215 (612)
Q Consensus 138 dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~ 215 (612)
|++-++|.....++++.|.+|-..|.|+.|+|++.++++|+ .+|++||+.+|..++.|.||.++|.+++|||+|++|+
T Consensus 514 D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~La 593 (707)
T KOG0263|consen 514 DQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLA 593 (707)
T ss_pred CceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEe
Confidence 99999999999999999999999999999999999999999 8999999999999999999999999999999999999
Q ss_pred EEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcc
Q 007234 216 SSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE 285 (612)
Q Consensus 216 s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~ 285 (612)
+++ .|+.|.+||+.++... ..+..+...+..+.|+ .+|..||+|+.|++|++||+....
T Consensus 594 Sg~-ed~~I~iWDl~~~~~v-----~~l~~Ht~ti~SlsFS-----~dg~vLasgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 594 SGD-EDGLIKIWDLANGSLV-----KQLKGHTGTIYSLSFS-----RDGNVLASGGADNSVRLWDLTKVI 652 (707)
T ss_pred ecc-cCCcEEEEEcCCCcch-----hhhhcccCceeEEEEe-----cCCCEEEecCCCCeEEEEEchhhc
Confidence 997 7999999999998754 2333447777888898 999999999999999999976543
No 18
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.2e-31 Score=280.39 Aligned_cols=277 Identities=23% Similarity=0.333 Sum_probs=231.8
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEECCCCc--EEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCC
Q 007234 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQ--VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGS 86 (612)
Q Consensus 9 l~~~fspdg~~las~s~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 86 (612)
.|+.|||||+++++++.|+.+++|+..+++ ...++.+|...+..+.|+++ +
T Consensus 163 ~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d---------------------------~ 215 (456)
T KOG0266|consen 163 TCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPD---------------------------G 215 (456)
T ss_pred EEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCC---------------------------C
Confidence 456999999999999999999999998887 77777778777777777776 8
Q ss_pred cEEEEEECCCcEEEEEcC-CCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEE
Q 007234 87 SLLVLGTGGGDVLALAVS-AGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCM 165 (612)
Q Consensus 87 ~~l~~gs~~g~I~vwd~~-~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l 165 (612)
.++++|+.|++|+|||+. .+..+..+ .+|...|++++|+|+|+.+++|+.|++|++||+++++++..+.+|..+|+++
T Consensus 216 ~~l~s~s~D~tiriwd~~~~~~~~~~l-~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~ 294 (456)
T KOG0266|consen 216 SYLLSGSDDKTLRIWDLKDDGRNLKTL-KGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGL 294 (456)
T ss_pred cEEEEecCCceEEEeeccCCCeEEEEe-cCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEE
Confidence 899999999999999994 44666566 6999999999999999999999999999999999999999999999999999
Q ss_pred EECCCCCEEEEeC--CeEEEEEcCCCe--eEEEEecCCCC--EEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCcccccee
Q 007234 166 AVSSDGKMLATAA--GQLKTFNCSDHK--KMQKFSGHPGA--VRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC 239 (612)
Q Consensus 166 ~~spdg~~l~~~~--g~i~lwd~~~~~--~~~~~~~h~~~--v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~ 239 (612)
+|++++.++++++ +.|++||+.++. ++..+.++..+ ++++.|+|++.++++++ .|+.+++||+..+... .
T Consensus 295 ~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~-~d~~~~~w~l~~~~~~---~ 370 (456)
T KOG0266|consen 295 AFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSAS-LDRTLKLWDLRSGKSV---G 370 (456)
T ss_pred EECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEec-CCCeEEEEEccCCcce---e
Confidence 9999999999998 999999999998 66788777766 99999999999999997 7999999999988644 1
Q ss_pred eEeecCCce--eEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhcc
Q 007234 240 VLAMEHPAV--FMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAA 317 (612)
Q Consensus 240 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~ 317 (612)
.+ ..|... .+..... .+++.++++|+.|+.|++||..++..+.
T Consensus 371 ~~-~~~~~~~~~~~~~~~-----~~~~~~i~sg~~d~~v~~~~~~s~~~~~----------------------------- 415 (456)
T KOG0266|consen 371 TY-TGHSNLVRCIFSPTL-----STGGKLIYSGSEDGSVYVWDSSSGGILQ----------------------------- 415 (456)
T ss_pred ee-cccCCcceeEecccc-----cCCCCeEEEEeCCceEEEEeCCccchhh-----------------------------
Confidence 11 123332 2222222 3899999999999999999987765432
Q ss_pred cccceecCCCceEEEEeCCccCceEEEeecc-CCCeEEEEecCCCceEecccc--ceeeecceee
Q 007234 318 KLQDIVKPASVHTFVAYGLLLKPSFQKILVN-SGEDINLNCSQDGVLLPMSQS--LLKSKRGRYV 379 (612)
Q Consensus 318 ~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h-~~~v~~l~~S~dg~~l~~s~s--~d~~~~~w~~ 379 (612)
.+.+| ...+..+++++...++ ++++ .|+.+++|..
T Consensus 416 --------------------------~l~~h~~~~~~~~~~~~~~~~~-~s~s~~~d~~~~~w~~ 453 (456)
T KOG0266|consen 416 --------------------------RLEGHSKAAVSDLSSHPTENLI-ASSSFEGDGLIRLWKY 453 (456)
T ss_pred --------------------------hhcCCCCCceeccccCCCcCee-eecCcCCCceEEEecC
Confidence 23344 4467778888888888 7777 7888999964
No 19
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2.8e-31 Score=241.86 Aligned_cols=233 Identities=17% Similarity=0.262 Sum_probs=207.2
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEECCCC------cEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234 8 DILTSFSPALDYFAICSGDARIKIWDTLKG------QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (612)
Q Consensus 8 ~l~~~fspdg~~las~s~dg~i~iwd~~~~------~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (612)
.+.|+|+|.|+++|+|+-|+...||++.+. ...+++.+|.+.+.++.|..+
T Consensus 100 VMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD----------------------- 156 (343)
T KOG0286|consen 100 VMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD----------------------- 156 (343)
T ss_pred EEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCC-----------------------
Confidence 378999999999999999999999999855 355667777777666666543
Q ss_pred cccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEec-CCCEEEEEecCCcEEEEECCCCceeEEEecCCC
Q 007234 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK 160 (612)
Q Consensus 82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~ 160 (612)
..|++++.|.+..+||+++|+.+..+ .+|.+.|.+++++| +++.|++|+-|++.++||++.+.++++|.+|+.
T Consensus 157 -----~~ilT~SGD~TCalWDie~g~~~~~f-~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghes 230 (343)
T KOG0286|consen 157 -----NHILTGSGDMTCALWDIETGQQTQVF-HGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHES 230 (343)
T ss_pred -----CceEecCCCceEEEEEcccceEEEEe-cCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeeccccc
Confidence 56899999999999999999999777 68999999999999 999999999999999999999999999999999
Q ss_pred CeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEec--CCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCcccc
Q 007234 161 GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSG--HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS 236 (612)
Q Consensus 161 ~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~--h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~ 236 (612)
.|++++|.|+|.-+++|+ +++++||++..+.+..+.. -..+|++++||-.|++|+++. .|.++.+||.-.++..
T Consensus 231 DINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy-~d~~c~vWDtlk~e~v- 308 (343)
T KOG0286|consen 231 DINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGY-DDFTCNVWDTLKGERV- 308 (343)
T ss_pred ccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeee-cCCceeEeeccccceE-
Confidence 999999999999999999 8999999999998888862 235799999999999999886 7999999998887643
Q ss_pred ceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEE
Q 007234 237 ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY 280 (612)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd 280 (612)
-.+..+..-++++..+ |||..+++|+.|.+++||.
T Consensus 309 ----g~L~GHeNRvScl~~s-----~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 309 ----GVLAGHENRVSCLGVS-----PDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred ----EEeeccCCeeEEEEEC-----CCCcEEEecchhHheeecC
Confidence 4556778888888887 9999999999999999994
No 20
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=8.9e-31 Score=265.61 Aligned_cols=326 Identities=16% Similarity=0.200 Sum_probs=269.0
Q ss_pred CcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcE--EEEeeccCCccccccccccccccccccceeEEEeeeccccc
Q 007234 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQV--QTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (612)
Q Consensus 3 s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~ 80 (612)
...|. ++.||.|.++|++||.|-+++||.+...+- ...+.+|...|..+.|..+
T Consensus 145 fddi~--si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~---------------------- 200 (893)
T KOG0291|consen 145 FDDIT--SIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGAN---------------------- 200 (893)
T ss_pred cccee--EEEeccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccC----------------------
Confidence 34664 459999999999999999999999986665 5667788887777777766
Q ss_pred ccccCCcEEEEEECCCcEEEEEcCC-----------------------CeE-----EE-----EeccCCCCCeEEEEEec
Q 007234 81 KRKLGSSLLVLGTGGGDVLALAVSA-----------------------GQL-----KW-----RLSDCHPGGVSAISFAT 127 (612)
Q Consensus 81 ~~~~~~~~l~~gs~~g~I~vwd~~~-----------------------~~~-----~~-----~~~~~h~~~V~~l~~sp 127 (612)
..-+++.+.||.+.+|.... ++. .+ .++......|++.+|++
T Consensus 201 -----~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~ 275 (893)
T KOG0291|consen 201 -----SLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHK 275 (893)
T ss_pred -----cceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccC
Confidence 56689999999999998761 111 11 12223347899999999
Q ss_pred CCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEEEECCCCCEEEEeC---CeEEEEEcCCCeeEEEEecCCCCEEE
Q 007234 128 HGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHPGAVRF 204 (612)
Q Consensus 128 ~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~---g~i~lwd~~~~~~~~~~~~h~~~v~~ 204 (612)
..+.|++|-..|...++++....+++.+.....+|..++|+..|.++|.|+ |.+-+|+.++..-+.+.+||...+++
T Consensus 276 ~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~ 355 (893)
T KOG0291|consen 276 GTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITS 355 (893)
T ss_pred CceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceee
Confidence 999999999999999999999999999998888999999999999999998 79999999999989999999999999
Q ss_pred EEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCc
Q 007234 205 MTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (612)
Q Consensus 205 l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~ 284 (612)
++++|||+++++++ .||.|+|||...+- |..++..|...++.+.|. ..|+.+++.|.||+|+.||+...
T Consensus 356 l~YSpDgq~iaTG~-eDgKVKvWn~~Sgf-----C~vTFteHts~Vt~v~f~-----~~g~~llssSLDGtVRAwDlkRY 424 (893)
T KOG0291|consen 356 LAYSPDGQLIATGA-EDGKVKVWNTQSGF-----CFVTFTEHTSGVTAVQFT-----ARGNVLLSSSLDGTVRAWDLKRY 424 (893)
T ss_pred EEECCCCcEEEecc-CCCcEEEEeccCce-----EEEEeccCCCceEEEEEE-----ecCCEEEEeecCCeEEeeeeccc
Confidence 99999999999998 79999999998876 667888888888899998 89999999999999999999999
Q ss_pred ceecccCCc-eeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCce
Q 007234 285 EELRNTKAT-KILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVL 363 (612)
Q Consensus 285 ~~~~~~~~~-~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~ 363 (612)
+..+++..+ ..+..|.. ..|.+. .+.+|+.|. ++..+|.. ......+.+.+|.++|.+++|+|+|..
T Consensus 425 rNfRTft~P~p~Qfscva-vD~sGe----lV~AG~~d~----F~IfvWS~---qTGqllDiLsGHEgPVs~l~f~~~~~~ 492 (893)
T KOG0291|consen 425 RNFRTFTSPEPIQFSCVA-VDPSGE----LVCAGAQDS----FEIFVWSV---QTGQLLDILSGHEGPVSGLSFSPDGSL 492 (893)
T ss_pred ceeeeecCCCceeeeEEE-EcCCCC----EEEeeccce----EEEEEEEe---ecCeeeehhcCCCCcceeeEEccccCe
Confidence 888887744 33444433 344454 677777764 23333332 234556688999999999999999999
Q ss_pred Eeccccceeeecceeeec
Q 007234 364 LPMSQSLLKSKRGRYVQN 381 (612)
Q Consensus 364 l~~s~s~d~~~~~w~~~~ 381 (612)
| +|+|.|+++|+|++-+
T Consensus 493 L-aS~SWDkTVRiW~if~ 509 (893)
T KOG0291|consen 493 L-ASGSWDKTVRIWDIFS 509 (893)
T ss_pred E-EeccccceEEEEEeec
Confidence 9 9999999999999743
No 21
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=3e-30 Score=255.75 Aligned_cols=280 Identities=23% Similarity=0.312 Sum_probs=232.9
Q ss_pred CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (612)
Q Consensus 2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (612)
|.++|.++ +|+|++++|++++.||.|++||..+++....+..|...+. .+.|.+.
T Consensus 8 h~~~i~~~--~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~------------------~~~~~~~----- 62 (289)
T cd00200 8 HTGGVTCV--AFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVR------------------DVAASAD----- 62 (289)
T ss_pred cCCCEEEE--EEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCccee------------------EEEECCC-----
Confidence 46788655 9999999999999999999999999887777766555443 3444432
Q ss_pred cccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCC
Q 007234 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG 161 (612)
Q Consensus 82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~ 161 (612)
++.+++++.+|.|.+|++.+++....+ ..|...|.++.|+|+++++++++.|+.|++||+.+++....+..|...
T Consensus 63 ----~~~l~~~~~~~~i~i~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 137 (289)
T cd00200 63 ----GTYLASGSSDKTIRLWDLETGECVRTL-TGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDW 137 (289)
T ss_pred ----CCEEEEEcCCCeEEEEEcCcccceEEE-eccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCc
Confidence 678999999999999999988777666 468889999999999888888888999999999999999999888889
Q ss_pred eeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCcccccee
Q 007234 162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC 239 (612)
Q Consensus 162 v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~ 239 (612)
+.+++|+|++.++++++ |.|++||+++++.+..+..|...+.++.|+|+++.+++++ .|+.+++||+..++..
T Consensus 138 i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~~i~i~d~~~~~~~---- 212 (289)
T cd00200 138 VNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSS-SDGTIKLWDLSTGKCL---- 212 (289)
T ss_pred EEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEec-CCCcEEEEECCCCcee----
Confidence 99999999999999886 8999999999999999999999999999999999898887 5999999999876533
Q ss_pred eEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhcccc
Q 007234 240 VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKL 319 (612)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~ 319 (612)
..+..+...+..+.+. +++.++++++.||.|++|+..+++.+.
T Consensus 213 -~~~~~~~~~i~~~~~~-----~~~~~~~~~~~~~~i~i~~~~~~~~~~------------------------------- 255 (289)
T cd00200 213 -GTLRGHENGVNSVAFS-----PDGYLLASGSEDGTIRVWDLRTGECVQ------------------------------- 255 (289)
T ss_pred -cchhhcCCceEEEEEc-----CCCcEEEEEcCCCcEEEEEcCCceeEE-------------------------------
Confidence 3332333355667776 888888888889999999986643321
Q ss_pred cceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeeccee
Q 007234 320 QDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY 378 (612)
Q Consensus 320 d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~ 378 (612)
.+..|...+.+++|+++|.++ ++++.|+.+++|+
T Consensus 256 ------------------------~~~~~~~~i~~~~~~~~~~~l-~~~~~d~~i~iw~ 289 (289)
T cd00200 256 ------------------------TLSGHTNSVTSLAWSPDGKRL-ASGSADGTIRIWD 289 (289)
T ss_pred ------------------------EccccCCcEEEEEECCCCCEE-EEecCCCeEEecC
Confidence 122455578899999999999 9999999999995
No 22
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.2e-30 Score=244.56 Aligned_cols=326 Identities=14% Similarity=0.119 Sum_probs=259.9
Q ss_pred CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (612)
Q Consensus 2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (612)
|+.+| .+++.+|+.+++|+|+.|..-.+|++.+|....++.+|...|.++.|+++
T Consensus 63 H~~sv--Favsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fshd----------------------- 117 (399)
T KOG0296|consen 63 HTDSV--FAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHD----------------------- 117 (399)
T ss_pred cCCce--EEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccC-----------------------
Confidence 56778 56699999999999999999999999999999999999999999999988
Q ss_pred cccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCC
Q 007234 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG 161 (612)
Q Consensus 82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~ 161 (612)
+.+|++|..+|.|+||...++...+.+. .....+.-+.|+|.+..|+.|+.||.+.+|.+.++...+.+.+|..+
T Consensus 118 ----gtlLATGdmsG~v~v~~~stg~~~~~~~-~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ 192 (399)
T KOG0296|consen 118 ----GTLLATGDMSGKVLVFKVSTGGEQWKLD-QEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSP 192 (399)
T ss_pred ----ceEEEecCCCccEEEEEcccCceEEEee-cccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCC
Confidence 9999999999999999999999988885 35677899999999999999999999999999998888999999999
Q ss_pred eeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecC-CCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccc-
Q 007234 162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGH-PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA- 237 (612)
Q Consensus 162 v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h-~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~- 237 (612)
+++=.|.|||+.++++. |+|++||+++++++..+.+. ..+..++.++..+..++.+. .++.+.+-...+++...-
T Consensus 193 ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~-~e~~~~~~~~~sgKVv~~~ 271 (399)
T KOG0296|consen 193 CTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGN-SEGVACGVNNGSGKVVNCN 271 (399)
T ss_pred cccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEecc-CCccEEEEccccceEEEec
Confidence 99999999999999998 99999999999998888633 33566788888888777775 688887777666653310
Q ss_pred -----eeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccch
Q 007234 238 -----SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATA 312 (612)
Q Consensus 238 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 312 (612)
.......+....+..+.++ ..=.+.|+|+.||+|.|||+...+......-... +... .|.+ .+
T Consensus 272 n~~~~~l~~~~e~~~esve~~~~s-----s~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~-V~~l-~w~~-t~---- 339 (399)
T KOG0296|consen 272 NGTVPELKPSQEELDESVESIPSS-----SKLPLAACGSVDGTIAIYDLAASTLRHICEHEDG-VTKL-KWLN-TD---- 339 (399)
T ss_pred CCCCccccccchhhhhhhhhcccc-----cccchhhcccccceEEEEecccchhheeccCCCc-eEEE-EEcC-cc----
Confidence 0001111222333333333 4446788899999999999887655432222111 2111 1343 23
Q ss_pred hhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceee
Q 007234 313 AIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (612)
Q Consensus 313 ~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~ 379 (612)
++++++.+|.++.|| ...| ...-+..+|...|..++++||++++ +|+|.|++.++.++
T Consensus 340 ~l~t~c~~g~v~~wD----aRtG----~l~~~y~GH~~~Il~f~ls~~~~~v-vT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 340 YLLTACANGKVRQWD----ARTG----QLKFTYTGHQMGILDFALSPQKRLV-VTVSDDNTALVFEV 397 (399)
T ss_pred hheeeccCceEEeee----cccc----ceEEEEecCchheeEEEEcCCCcEE-EEecCCCeEEEEec
Confidence 899999999999888 2233 3334888999999999999999999 99999999999876
No 23
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=5.1e-31 Score=241.08 Aligned_cols=283 Identities=14% Similarity=0.192 Sum_probs=231.8
Q ss_pred CcccceeEEEEcCCCCEEEEEeCCCcEEEEECC-CCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTL-KGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (612)
Q Consensus 3 s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (612)
.+.|.. +.|+|+|.+||+|+.|..|.+|++. ..+-...+++|.+.|..+.|..+
T Consensus 47 ~geI~~--~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d----------------------- 101 (338)
T KOG0265|consen 47 KGEIYT--IKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRD----------------------- 101 (338)
T ss_pred cceEEE--EEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccC-----------------------
Confidence 567754 4999999999999999999999954 44556777888888877777776
Q ss_pred cccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCC-EEEEEecCCcEEEEECCCCceeEEEecCCC
Q 007234 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTGSLLGKFRASTK 160 (612)
Q Consensus 82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~-~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~ 160 (612)
++.|++++.|.+|+.||+++|++.+++ ++|.+-|+.+.-+.-|. ++.+++.|+++++||+++...++++. ...
T Consensus 102 ----~s~i~S~gtDk~v~~wD~~tG~~~rk~-k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~ky 175 (338)
T KOG0265|consen 102 ----GSHILSCGTDKTVRGWDAETGKRIRKH-KGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKY 175 (338)
T ss_pred ----CCEEEEecCCceEEEEecccceeeehh-ccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cce
Confidence 889999999999999999999999887 67999999998665554 46788899999999999999888876 356
Q ss_pred CeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccce
Q 007234 161 GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS 238 (612)
Q Consensus 161 ~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~ 238 (612)
.++++.|..++..+.+|+ +.|++||++.+.....+.||..+|+.+..+|+|.++++-+ .|.++++||++..... ..
T Consensus 176 qltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsns-Md~tvrvwd~rp~~p~-~R 253 (338)
T KOG0265|consen 176 QLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNS-MDNTVRVWDVRPFAPS-QR 253 (338)
T ss_pred eEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCcccccc-ccceEEEEEecccCCC-Cc
Confidence 899999999999999999 8999999999999999999999999999999999999987 6999999999865433 12
Q ss_pred eeEeecC--CceeEE--eEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhh
Q 007234 239 CVLAMEH--PAVFMD--CRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAI 314 (612)
Q Consensus 239 ~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i 314 (612)
++..+.. +..... .+.++ |++..+.+|+.|+.+++||......+.
T Consensus 254 ~v~if~g~~hnfeknlL~csws-----p~~~~i~ags~dr~vyvwd~~~r~~ly-------------------------- 302 (338)
T KOG0265|consen 254 CVKIFQGHIHNFEKNLLKCSWS-----PNGTKITAGSADRFVYVWDTTSRRILY-------------------------- 302 (338)
T ss_pred eEEEeecchhhhhhhcceeecc-----CCCCccccccccceEEEeecccccEEE--------------------------
Confidence 3333322 111111 22343 999999999999999999864332211
Q ss_pred hcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceee
Q 007234 315 FAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (612)
Q Consensus 315 ~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~ 379 (612)
.+.+|.+.|.++.|.|...++ .+++.|+++.+-++
T Consensus 303 -----------------------------klpGh~gsvn~~~Fhp~e~ii-ls~~sdk~i~lgei 337 (338)
T KOG0265|consen 303 -----------------------------KLPGHYGSVNEVDFHPTEPII-LSCSSDKTIYLGEI 337 (338)
T ss_pred -----------------------------EcCCcceeEEEeeecCCCcEE-EEeccCceeEeecc
Confidence 566888899999999999999 99999999877543
No 24
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.3e-30 Score=251.48 Aligned_cols=336 Identities=16% Similarity=0.207 Sum_probs=256.8
Q ss_pred CCcccceeEEEEcCCCC-EEEEEeCCCcEEEEECCCC--c--EEEEeeccCCccccccccccccccccccceeEEEeeec
Q 007234 2 GSSNIRDILTSFSPALD-YFAICSGDARIKIWDTLKG--Q--VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSV 76 (612)
Q Consensus 2 ~s~~V~~l~~~fspdg~-~las~s~dg~i~iwd~~~~--~--~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~ 76 (612)
+.++| ++++|+|-.. .+|+|+.|-..++|++... . .+..++ ..+...........++|++.|...
T Consensus 177 ~~~~V--~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lr--------h~~~~~~~s~~~nkdVT~L~Wn~~ 246 (524)
T KOG0273|consen 177 HESEV--FICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLR--------HCIREGGKSVPSNKDVTSLDWNND 246 (524)
T ss_pred CCCce--EEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhh--------hhhhhhcccCCccCCcceEEecCC
Confidence 35667 7899999776 8999999999999998641 1 111111 111111112333578999999876
Q ss_pred ccccccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEe
Q 007234 77 DRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR 156 (612)
Q Consensus 77 ~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~ 156 (612)
|.+|++|+.+|.+++|+...+.. ..+ ..|.++|.++.|+..|.+|++++.|+++.+||..+|...+.|.
T Consensus 247 ---------G~~LatG~~~G~~riw~~~G~l~-~tl-~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~ 315 (524)
T KOG0273|consen 247 ---------GTLLATGSEDGEARIWNKDGNLI-STL-GQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFE 315 (524)
T ss_pred ---------CCeEEEeecCcEEEEEecCchhh-hhh-hccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeee
Confidence 89999999999999999865544 244 5799999999999999999999999999999999999999999
Q ss_pred cCCCCeeEEEECCCCCEEEEeC-CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccc
Q 007234 157 ASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ 235 (612)
Q Consensus 157 ~~~~~v~~l~~spdg~~l~~~~-g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~ 235 (612)
.|..+-..+.|-.+..+..++. |.|+++-+....++.++.||.++|.++.|.|.|.+|++++ .|++++||........
T Consensus 316 ~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~S-dD~TlkiWs~~~~~~~ 394 (524)
T KOG0273|consen 316 FHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCS-DDGTLKIWSMGQSNSV 394 (524)
T ss_pred eccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEec-CCCeeEeeecCCCcch
Confidence 8888877889986655554444 9999999999999999999999999999999999999987 7999999997665422
Q ss_pred cceeeEeecCCceeEEeEEecCC-c--cC-CCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccc
Q 007234 236 SASCVLAMEHPAVFMDCRCIDNG-G--VD-DAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSAT 311 (612)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~-~--~~-~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 311 (612)
..+..+...+-.+.+++. . .+ ..+..+++++.|++|++||+..+.++..+..++..+.... |+|+++
T Consensus 395 -----~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysva-fS~~g~--- 465 (524)
T KOG0273|consen 395 -----HDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVA-FSPNGR--- 465 (524)
T ss_pred -----hhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEE-ecCCCc---
Confidence 233333333333444421 1 11 2457899999999999999999999988877766666555 899999
Q ss_pred hhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceee
Q 007234 312 AAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (612)
Q Consensus 312 ~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~ 379 (612)
++++|++++++-+|+ ......++...+. +.|..++|+.+|.+|.++. .|+++++-++
T Consensus 466 -ylAsGs~dg~V~iws--------~~~~~l~~s~~~~-~~Ifel~Wn~~G~kl~~~~-sd~~vcvldl 522 (524)
T KOG0273|consen 466 -YLASGSLDGCVHIWS--------TKTGKLVKSYQGT-GGIFELCWNAAGDKLGACA-SDGSVCVLDL 522 (524)
T ss_pred -EEEecCCCCeeEecc--------ccchheeEeecCC-CeEEEEEEcCCCCEEEEEe-cCCCceEEEe
Confidence 999999999888877 2333334444333 3589999999999994444 4777776554
No 25
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.2e-30 Score=232.57 Aligned_cols=249 Identities=17% Similarity=0.274 Sum_probs=209.3
Q ss_pred CcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCc--EEEEeeccCCccccccccccccccccccceeEEEeeeccccc
Q 007234 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ--VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (612)
Q Consensus 3 s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~ 80 (612)
.+.|+.| ...||+.+||+++.. .||+||+.++. .+.+|.+|...|..+.|..+
T Consensus 40 dsqVNrL--eiTpdk~~LAaa~~q-hvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~d---------------------- 94 (311)
T KOG0315|consen 40 DSQVNRL--EITPDKKDLAAAGNQ-HVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCD---------------------- 94 (311)
T ss_pred ccceeeE--EEcCCcchhhhccCC-eeEEEEccCCCCCceeEEeccCCceEEEEEeec----------------------
Confidence 4678777 999999999999865 69999999876 58899999998888888887
Q ss_pred ccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEec-CC
Q 007234 81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA-ST 159 (612)
Q Consensus 81 ~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~-~~ 159 (612)
++.+++|+.||+++|||++.-.+.+.+ .|.++|+++..+|+...|++|..+|.|++||+....+...+-. ..
T Consensus 95 -----grWMyTgseDgt~kIWdlR~~~~qR~~--~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~ 167 (311)
T KOG0315|consen 95 -----GRWMYTGSEDGTVKIWDLRSLSCQRNY--QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDD 167 (311)
T ss_pred -----CeEEEecCCCceEEEEeccCcccchhc--cCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCC
Confidence 899999999999999999996665444 4889999999999988999999999999999988877666443 34
Q ss_pred CCeeEEEECCCCCEEEEeC--CeEEEEEcCCC------eeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCC
Q 007234 160 KGISCMAVSSDGKMLATAA--GQLKTFNCSDH------KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (612)
Q Consensus 160 ~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~------~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~ 231 (612)
.+|.++.+.|||++++++. |..++|++-+. +++.+++.|.+.+..+.+|||+++|++++ .|.+++||+.++
T Consensus 168 ~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~s-sdktv~iwn~~~ 246 (311)
T KOG0315|consen 168 TSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCS-SDKTVKIWNTDD 246 (311)
T ss_pred cceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeec-CCceEEEEecCC
Confidence 5899999999999999988 99999998654 45778899999999999999999999998 699999999988
Q ss_pred CccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCc
Q 007234 232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKAT 293 (612)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~ 293 (612)
--+ ....+..+...+--..|+ .||.+|++++.|+.+++|++..++.++..+++
T Consensus 247 ~~k----le~~l~gh~rWvWdc~FS-----~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh 299 (311)
T KOG0315|consen 247 FFK----LELVLTGHQRWVWDCAFS-----ADGEYLVTASSDHTARLWDLSAGKEVRQYQGH 299 (311)
T ss_pred cee----eEEEeecCCceEEeeeec-----cCccEEEecCCCCceeecccccCceeeecCCc
Confidence 721 123334343333344565 89999999999999999999999987765544
No 26
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.98 E-value=2.3e-31 Score=272.72 Aligned_cols=201 Identities=18% Similarity=0.315 Sum_probs=190.2
Q ss_pred CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (612)
Q Consensus 2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (612)
|++||... +|+|+.++|++||.|+++|+|.+.+..++-.+++|..+|....|++-
T Consensus 450 H~GPVyg~--sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~----------------------- 504 (707)
T KOG0263|consen 450 HSGPVYGC--SFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPR----------------------- 504 (707)
T ss_pred CCCceeee--eecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCC-----------------------
Confidence 57899655 99999999999999999999999999999999999999998888876
Q ss_pred cccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCC
Q 007234 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG 161 (612)
Q Consensus 82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~ 161 (612)
|-++++|+.|++.++|.......++. +.+|-+.|.|+.|+|++.++++||.|.+|++||+.+|..++.|.+|.++
T Consensus 505 ----GyYFatas~D~tArLWs~d~~~PlRi-faghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~ 579 (707)
T KOG0263|consen 505 ----GYYFATASHDQTARLWSTDHNKPLRI-FAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGP 579 (707)
T ss_pred ----ceEEEecCCCceeeeeecccCCchhh-hcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCc
Confidence 88999999999999999999888744 4789999999999999999999999999999999999999999999999
Q ss_pred eeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCc
Q 007234 162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (612)
Q Consensus 162 v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~ 233 (612)
|.+++|+|+|++|++|+ |.|.+||+.+++.+..+.+|++.|.++.|+.+|..|+++| .|.+|++||+....
T Consensus 580 V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg-~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 580 VTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGG-ADNSVRLWDLTKVI 652 (707)
T ss_pred eEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecC-CCCeEEEEEchhhc
Confidence 99999999999999999 9999999999999999999999999999999999999998 79999999987654
No 27
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=3.3e-31 Score=251.46 Aligned_cols=284 Identities=16% Similarity=0.182 Sum_probs=229.0
Q ss_pred CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCc---EEEEeeccCCccccccccccccccccccceeEEEeeeccc
Q 007234 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ---VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDR 78 (612)
Q Consensus 2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~---~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~ 78 (612)
|+..|+.+ .||++|+|||+++.|.+.-||++.... ...++.+|..+|.-+.|+|+
T Consensus 223 htdEVWfl--~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPD-------------------- 280 (519)
T KOG0293|consen 223 HTDEVWFL--QFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPD-------------------- 280 (519)
T ss_pred CCCcEEEE--EEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCC--------------------
Confidence 45678555 999999999999999999999875443 46777778777776666666
Q ss_pred ccccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecC
Q 007234 79 KKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS 158 (612)
Q Consensus 79 ~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~ 158 (612)
.+++++|+.+..+.+||+.+|.....+..+|...+.+++|.|||..+++|+.|+++..||+. |.....+++.
T Consensus 281 -------dryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gv 352 (519)
T KOG0293|consen 281 -------DRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGV 352 (519)
T ss_pred -------CCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCC-cchhhccccc
Confidence 78899999999999999999999888877778899999999999999999999999999975 6666667665
Q ss_pred CC-CeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccc
Q 007234 159 TK-GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ 235 (612)
Q Consensus 159 ~~-~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~ 235 (612)
.. .|.++++++||+++++.. ..|++|+..+........ ...+|+++..|.+++++++.- .+..+++||+......
T Consensus 353 r~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL-~~qei~LWDl~e~~lv 430 (519)
T KOG0293|consen 353 RDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNL-QDQEIHLWDLEENKLV 430 (519)
T ss_pred ccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEc-ccCeeEEeecchhhHH
Confidence 43 699999999999998776 799999988765554443 567899999999999888875 7999999999965533
Q ss_pred cceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhh
Q 007234 236 SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIF 315 (612)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~ 315 (612)
. .+.......++-..||. ..+..++++||+|+.|+||+..+++.+.
T Consensus 431 ~---kY~Ghkq~~fiIrSCFg----g~~~~fiaSGSED~kvyIWhr~sgkll~--------------------------- 476 (519)
T KOG0293|consen 431 R---KYFGHKQGHFIIRSCFG----GGNDKFIASGSEDSKVYIWHRISGKLLA--------------------------- 476 (519)
T ss_pred H---HhhcccccceEEEeccC----CCCcceEEecCCCceEEEEEccCCceeE---------------------------
Confidence 1 11111223333344554 2566899999999999999987776542
Q ss_pred cccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceee
Q 007234 316 AAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (612)
Q Consensus 316 ~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~ 379 (612)
.+.+|...|.+++|+|......+|+|+|+++|+|..
T Consensus 477 ----------------------------~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~ 512 (519)
T KOG0293|consen 477 ----------------------------VLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGP 512 (519)
T ss_pred ----------------------------eecCCcceeeEEecCCCCHHHhhccCCCCeEEEecC
Confidence 566788899999999988876699999999999964
No 28
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.98 E-value=1.2e-29 Score=287.03 Aligned_cols=304 Identities=15% Similarity=0.161 Sum_probs=227.7
Q ss_pred CcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccc
Q 007234 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (612)
Q Consensus 3 s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (612)
...|.++ +|+|+|++||+|+.|+.|+|||..+...... ..+ ..+. . ..+ .....++.|.+..
T Consensus 483 ~~~V~~i--~fs~dg~~latgg~D~~I~iwd~~~~~~~~~-~~~-~~~~--~-----~~~--~~~v~~l~~~~~~----- 544 (793)
T PLN00181 483 SNLVCAI--GFDRDGEFFATAGVNKKIKIFECESIIKDGR-DIH-YPVV--E-----LAS--RSKLSGICWNSYI----- 544 (793)
T ss_pred CCcEEEE--EECCCCCEEEEEeCCCEEEEEECCccccccc-ccc-cceE--E-----ecc--cCceeeEEeccCC-----
Confidence 4567544 9999999999999999999999764210000 000 0000 0 001 2345678887765
Q ss_pred ccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEec-CCCEEEEEecCCcEEEEECCCCceeEEEecCCCC
Q 007234 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG 161 (612)
Q Consensus 83 ~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~ 161 (612)
+.++++++.||.|++||+.+++.+..+ .+|...|++++|+| ++.+|++|+.||+|++||+.++..+..+..+ ..
T Consensus 545 ---~~~las~~~Dg~v~lWd~~~~~~~~~~-~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~ 619 (793)
T PLN00181 545 ---KSQVASSNFEGVVQVWDVARSQLVTEM-KEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-AN 619 (793)
T ss_pred ---CCEEEEEeCCCeEEEEECCCCeEEEEe-cCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CC
Confidence 678999999999999999999888666 67999999999997 7889999999999999999999998888754 67
Q ss_pred eeEEEEC-CCCCEEEEeC--CeEEEEEcCCCe-eEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccc-c
Q 007234 162 ISCMAVS-SDGKMLATAA--GQLKTFNCSDHK-KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ-S 236 (612)
Q Consensus 162 v~~l~~s-pdg~~l~~~~--g~i~lwd~~~~~-~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~-~ 236 (612)
+.++.|+ ++|.++++|+ |.|++||+++++ .+..+.+|...|.++.|. ++.++++++ .|++|++||+...... .
T Consensus 620 v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s-~D~~ikiWd~~~~~~~~~ 697 (793)
T PLN00181 620 ICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSS-TDNTLKLWDLSMSISGIN 697 (793)
T ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEE-CCCEEEEEeCCCCccccC
Confidence 8999995 5799999998 899999998865 567788999999999997 677888887 7999999999754210 1
Q ss_pred ceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhc
Q 007234 237 ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFA 316 (612)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~ 316 (612)
..++..+..+...+..+.++ +++.+|++|+.||.|++|+......+.... +..... +
T Consensus 698 ~~~l~~~~gh~~~i~~v~~s-----~~~~~lasgs~D~~v~iw~~~~~~~~~s~~-----------~~~~~~-----~-- 754 (793)
T PLN00181 698 ETPLHSFMGHTNVKNFVGLS-----VSDGYIATGSETNEVFVYHKAFPMPVLSYK-----------FKTIDP-----V-- 754 (793)
T ss_pred CcceEEEcCCCCCeeEEEEc-----CCCCEEEEEeCCCEEEEEECCCCCceEEEe-----------cccCCc-----c--
Confidence 12344555566666777787 899999999999999999975543221110 000000 0
Q ss_pred ccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceee
Q 007234 317 AKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (612)
Q Consensus 317 ~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~ 379 (612)
.+ .....|...|.+++|+++|..| ++|+.|+.+++|++
T Consensus 755 -----------------~~-------~~~~~~~~~V~~v~ws~~~~~l-va~~~dG~I~i~~~ 792 (793)
T PLN00181 755 -----------------SG-------LEVDDASQFISSVCWRGQSSTL-VAANSTGNIKILEM 792 (793)
T ss_pred -----------------cc-------cccCCCCcEEEEEEEcCCCCeE-EEecCCCcEEEEec
Confidence 00 0112345579999999999999 99999999999975
No 29
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.3e-30 Score=228.84 Aligned_cols=246 Identities=18% Similarity=0.342 Sum_probs=208.4
Q ss_pred CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (612)
Q Consensus 2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (612)
++++|+.+ .|+-||+|.++|+.|.+|++||...|.+++++.+|...+.....+.+
T Consensus 16 ~qgaV~av--ryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~D----------------------- 70 (307)
T KOG0316|consen 16 AQGAVRAV--RYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSD----------------------- 70 (307)
T ss_pred cccceEEE--EEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeecccccc-----------------------
Confidence 46789766 99999999999999999999999999999999999988876666655
Q ss_pred cccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCC--ceeEEEecCC
Q 007234 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG--SLLGKFRAST 159 (612)
Q Consensus 82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~--~~~~~~~~~~ 159 (612)
+..+++|+.|..|.+||+++|+..+++ .+|.+.|+.+.|+.+...+++|+.|.++++||.++. ++++.+....
T Consensus 71 ----nskf~s~GgDk~v~vwDV~TGkv~Rr~-rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~ 145 (307)
T KOG0316|consen 71 ----NSKFASCGGDKAVQVWDVNTGKVDRRF-RGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAK 145 (307)
T ss_pred ----ccccccCCCCceEEEEEcccCeeeeec-ccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhc
Confidence 677999999999999999999999887 689999999999999999999999999999999754 7888898888
Q ss_pred CCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccc
Q 007234 160 KGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA 237 (612)
Q Consensus 160 ~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~ 237 (612)
..|.++.++ +..+++|+ |+++.||++.|+.....-|| ||+++.|++|++..+.++ -|+++++.|-.+++...
T Consensus 146 D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sDy~g~--pit~vs~s~d~nc~La~~-l~stlrLlDk~tGklL~- 219 (307)
T KOG0316|consen 146 DGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSDYFGH--PITSVSFSKDGNCSLASS-LDSTLRLLDKETGKLLK- 219 (307)
T ss_pred CceeEEEec--ccEEEeeccCCcEEEEEeecceeehhhcCC--cceeEEecCCCCEEEEee-ccceeeecccchhHHHH-
Confidence 899999987 55777777 99999999999877666554 799999999999999887 69999999999998652
Q ss_pred eeeEeecCC--ceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCC
Q 007234 238 SCVLAMEHP--AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKA 292 (612)
Q Consensus 238 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~ 292 (612)
.+. .|. ..-+. .++. ....++++|++||.+++||+....++.....
T Consensus 220 --sYk-Ghkn~eykld-c~l~-----qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~ 267 (307)
T KOG0316|consen 220 --SYK-GHKNMEYKLD-CCLN-----QSDTHVFSGSEDGKVYFWDLVDETQISKLSV 267 (307)
T ss_pred --Hhc-ccccceeeee-eeec-----ccceeEEeccCCceEEEEEeccceeeeeecc
Confidence 121 222 22233 2343 5668999999999999999988887755443
No 30
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.7e-30 Score=255.88 Aligned_cols=247 Identities=15% Similarity=0.253 Sum_probs=219.9
Q ss_pred CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (612)
Q Consensus 2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (612)
++..|+++ .|+|...++.++-..|.|.|||.++...++.|....-++....|-..
T Consensus 12 rSdRVKsV--d~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaR----------------------- 66 (794)
T KOG0276|consen 12 RSDRVKSV--DFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIAR----------------------- 66 (794)
T ss_pred cCCceeee--ecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeec-----------------------
Confidence 35567666 99999999999999999999999999999999876666665555444
Q ss_pred cccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCC-ceeEEEecCCC
Q 007234 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG-SLLGKFRASTK 160 (612)
Q Consensus 82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~-~~~~~~~~~~~ 160 (612)
.+.+++|+.|+.|+||+..+++.+..+ .+|..-|.+++.+|...+++|+|.|-+|++||.+.. .+.++|.+|..
T Consensus 67 ----knWiv~GsDD~~IrVfnynt~ekV~~F-eAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~H 141 (794)
T KOG0276|consen 67 ----KNWIVTGSDDMQIRVFNYNTGEKVKTF-EAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEH 141 (794)
T ss_pred ----cceEEEecCCceEEEEecccceeeEEe-eccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcce
Confidence 677999999999999999999999777 689999999999999999999999999999999765 78899999999
Q ss_pred CeeEEEECC-CCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCC--cEEEEEEcCCCeEEEEEcCCCccc
Q 007234 161 GISCMAVSS-DGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNG--KYVLSSAVGERYIALWRTDGVKKQ 235 (612)
Q Consensus 161 ~v~~l~~sp-dg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~--~~l~s~s~~d~~i~vwd~~~~~~~ 235 (612)
-|.+++|+| |.+.+++++ ++|++|.+.+..+..++.||...|+++.|-+.| .+|++++ +|.+++|||..+..
T Consensus 142 yVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsga-DD~tiKvWDyQtk~-- 218 (794)
T KOG0276|consen 142 YVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGA-DDLTIKVWDYQTKS-- 218 (794)
T ss_pred EEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecC-CCceEEEeecchHH--
Confidence 999999999 778899998 899999999999999999999999999998744 6999987 79999999999876
Q ss_pred cceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecc
Q 007234 236 SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRN 289 (612)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~ 289 (612)
|+.++..+..-++.++|. |.=..+++|++||+++||+..+.++-..
T Consensus 219 ---CV~TLeGHt~Nvs~v~fh-----p~lpiiisgsEDGTvriWhs~Ty~lE~t 264 (794)
T KOG0276|consen 219 ---CVQTLEGHTNNVSFVFFH-----PELPIIISGSEDGTVRIWNSKTYKLEKT 264 (794)
T ss_pred ---HHHHhhcccccceEEEec-----CCCcEEEEecCCccEEEecCcceehhhh
Confidence 667888888888899997 8889999999999999999888765443
No 31
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=3.5e-31 Score=243.75 Aligned_cols=275 Identities=20% Similarity=0.287 Sum_probs=226.1
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEee--------ccCCccccccccccccccccccceeEEEeeecccccc
Q 007234 10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFA--------DIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (612)
Q Consensus 10 ~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~--------~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (612)
|..|||||+||++|+.||-|.|||..+|+..+.++ -+...+.|+.|+.+
T Consensus 218 cA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRD----------------------- 274 (508)
T KOG0275|consen 218 CARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRD----------------------- 274 (508)
T ss_pred heeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeeccc-----------------------
Confidence 56999999999999999999999999998765443 23344444445444
Q ss_pred cccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCC
Q 007234 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG 161 (612)
Q Consensus 82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~ 161 (612)
...+++|+.||.|++|.+.+|.|++++..+|+..|+|+.|+.|+..+++++.|.++++.-+++|+++..|++|...
T Consensus 275 ----sEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSy 350 (508)
T KOG0275|consen 275 ----SEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSY 350 (508)
T ss_pred ----HHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCcccc
Confidence 7789999999999999999999999998899999999999999999999999999999999999999999999999
Q ss_pred eeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEe--cCCCCEEEEEEeeCC-cEEEEEEcCCCeEEEEEcCCCcccc
Q 007234 162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS--GHPGAVRFMTFSDNG-KYVLSSAVGERYIALWRTDGVKKQS 236 (612)
Q Consensus 162 v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~--~h~~~v~~l~~sp~~-~~l~s~s~~d~~i~vwd~~~~~~~~ 236 (612)
|+...|.+||.++++++ |+|++|+.++.+++.+|+ +...+|+++..-|.+ ..++.|. ..+++.+.++...-..
T Consensus 351 vn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCN-rsntv~imn~qGQvVr- 428 (508)
T KOG0275|consen 351 VNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCN-RSNTVYIMNMQGQVVR- 428 (508)
T ss_pred ccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEc-CCCeEEEEeccceEEe-
Confidence 99999999999999988 999999999999988885 445678888877754 4666665 6889999888764322
Q ss_pred ceeeEee--cCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhh
Q 007234 237 ASCVLAM--EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAI 314 (612)
Q Consensus 237 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i 314 (612)
.+.. .....++. ++.+ |.|.++.+.++|+.++.|...+|..-+
T Consensus 429 ---sfsSGkREgGdFi~-~~lS-----pkGewiYcigED~vlYCF~~~sG~LE~-------------------------- 473 (508)
T KOG0275|consen 429 ---SFSSGKREGGDFIN-AILS-----PKGEWIYCIGEDGVLYCFSVLSGKLER-------------------------- 473 (508)
T ss_pred ---eeccCCccCCceEE-EEec-----CCCcEEEEEccCcEEEEEEeecCceee--------------------------
Confidence 1111 12334444 3344 999999999999999999876664421
Q ss_pred hcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeeccee
Q 007234 315 FAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY 378 (612)
Q Consensus 315 ~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~ 378 (612)
++..|...|+.++-.|...+| +|-|.|+..++|.
T Consensus 474 -----------------------------tl~VhEkdvIGl~HHPHqNll-AsYsEDgllKLWk 507 (508)
T KOG0275|consen 474 -----------------------------TLPVHEKDVIGLTHHPHQNLL-ASYSEDGLLKLWK 507 (508)
T ss_pred -----------------------------eeecccccccccccCcccchh-hhhcccchhhhcC
Confidence 455677778888888888888 9999999999994
No 32
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=4.4e-29 Score=225.33 Aligned_cols=247 Identities=15% Similarity=0.146 Sum_probs=188.0
Q ss_pred eccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCC--ceeEEEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcC
Q 007234 112 LSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG--SLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCS 187 (612)
Q Consensus 112 ~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~--~~~~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~ 187 (612)
+..+|...|.+++|+|.|++|++||.|.++.+|.-..+ +++.++.+|+..|.|++|+++|++||+++ .+|.||.+.
T Consensus 56 ld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~d 135 (312)
T KOG0645|consen 56 LDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEID 135 (312)
T ss_pred ccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEec
Confidence 33679999999999999999999999999999975543 78889999999999999999999999999 799999987
Q ss_pred CC---eeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCC
Q 007234 188 DH---KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAG 264 (612)
Q Consensus 188 ~~---~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (612)
.+ .+...+.+|...|..+.|+|....|++++ .|.+|++|+-..+. ...++.++..+...+-++.|. +.|
T Consensus 136 eddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~S-YDnTIk~~~~~~dd--dW~c~~tl~g~~~TVW~~~F~-----~~G 207 (312)
T KOG0645|consen 136 EDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCS-YDNTIKVYRDEDDD--DWECVQTLDGHENTVWSLAFD-----NIG 207 (312)
T ss_pred CCCcEEEEeeeccccccccEEEEcCCcceeEEec-cCCeEEEEeecCCC--CeeEEEEecCccceEEEEEec-----CCC
Confidence 54 56788899999999999999999999997 79999999877422 244778888777666677787 899
Q ss_pred cEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEE
Q 007234 265 LYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQK 344 (612)
Q Consensus 265 ~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~ 344 (612)
..|++++.|++++||-..+.-.. .+....-.+. +. . ..|++++.|+.++++.... -..+.......+.
T Consensus 208 ~rl~s~sdD~tv~Iw~~~~~~~~-~~sr~~Y~v~----W~---~---~~IaS~ggD~~i~lf~~s~-~~d~p~~~l~~~~ 275 (312)
T KOG0645|consen 208 SRLVSCSDDGTVSIWRLYTDLSG-MHSRALYDVP----WD---N---GVIASGGGDDAIRLFKESD-SPDEPSWNLLAKK 275 (312)
T ss_pred ceEEEecCCcceEeeeeccCcch-hcccceEeee----ec---c---cceEeccCCCEEEEEEecC-CCCCchHHHHHhh
Confidence 99999999999999985432111 1111111111 11 1 2788888877666544220 0011111222223
Q ss_pred eeccCCCeEEEEecCC-CceEeccccceeeecceee
Q 007234 345 ILVNSGEDINLNCSQD-GVLLPMSQSLLKSKRGRYV 379 (612)
Q Consensus 345 ~~~h~~~v~~l~~S~d-g~~l~~s~s~d~~~~~w~~ 379 (612)
-..|...|.++.|.|. ...| +|||+||.+++|++
T Consensus 276 ~~aHe~dVNsV~w~p~~~~~L-~s~~DDG~v~~W~l 310 (312)
T KOG0645|consen 276 EGAHEVDVNSVQWNPKVSNRL-ASGGDDGIVNFWEL 310 (312)
T ss_pred hcccccccceEEEcCCCCCce-eecCCCceEEEEEe
Confidence 3458889999999996 4456 99999999999986
No 33
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=3.9e-31 Score=245.70 Aligned_cols=277 Identities=16% Similarity=0.225 Sum_probs=224.8
Q ss_pred CcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccc
Q 007234 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (612)
Q Consensus 3 s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (612)
+..|. |+.| |.+.+++|..|++|+|||..+-.+...+.+|.+.+.|+.|.
T Consensus 197 skgVY--ClQY--DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd-------------------------- 246 (499)
T KOG0281|consen 197 SKGVY--CLQY--DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD-------------------------- 246 (499)
T ss_pred CCceE--EEEe--cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--------------------------
Confidence 44553 3365 56679999999999999999999999999998877765554
Q ss_pred ccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCc---eeEEEecCC
Q 007234 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS---LLGKFRAST 159 (612)
Q Consensus 83 ~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~---~~~~~~~~~ 159 (612)
...+++|+.|.+|+|||+++|+++..+. +|...|..+.|+ +.+++++|.|.++.+||+.+.. +.+.+.+|.
T Consensus 247 ---~rviisGSSDsTvrvWDv~tge~l~tli-hHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHr 320 (499)
T KOG0281|consen 247 ---ERVIVSGSSDSTVRVWDVNTGEPLNTLI-HHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHR 320 (499)
T ss_pred ---ceEEEecCCCceEEEEeccCCchhhHHh-hhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhh
Confidence 5689999999999999999999997775 699999999997 4589999999999999998764 344577899
Q ss_pred CCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccc
Q 007234 160 KGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA 237 (612)
Q Consensus 160 ~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~ 237 (612)
..|+.+.|+ .+++++++ .+|++|++.+++.++++.||...|.|+.+. |+++++++ .|.+|++||+..|...
T Consensus 321 AaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr--~rlvVSGS-SDntIRlwdi~~G~cL-- 393 (499)
T KOG0281|consen 321 AAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGS-SDNTIRLWDIECGACL-- 393 (499)
T ss_pred hheeeeccc--cceEEEecCCceEEEEeccceeeehhhhcccccceehhcc--CeEEEecC-CCceEEEEeccccHHH--
Confidence 999999996 56999888 699999999999999999999999888764 77888877 6999999999999744
Q ss_pred eeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhcc
Q 007234 238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAA 317 (612)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~ 317 (612)
..++++...+.++-|. .+.+++|..||+|++||+.++..-+.. .+.
T Consensus 394 ---RvLeGHEeLvRciRFd-------~krIVSGaYDGkikvWdl~aaldpra~---------------~~~--------- 439 (499)
T KOG0281|consen 394 ---RVLEGHEELVRCIRFD-------NKRIVSGAYDGKIKVWDLQAALDPRAP---------------AST--------- 439 (499)
T ss_pred ---HHHhchHHhhhheeec-------CceeeeccccceEEEEecccccCCccc---------------ccc---------
Confidence 5677888888888884 478999999999999999877542210 000
Q ss_pred cccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceeeec
Q 007234 318 KLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN 381 (612)
Q Consensus 318 ~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~~~ 381 (612)
.+..++..|++.|..+.|. ...+ +++++|.+|.+|++.+
T Consensus 440 ----------------------~Cl~~lv~hsgRVFrLQFD--~fqI-vsssHddtILiWdFl~ 478 (499)
T KOG0281|consen 440 ----------------------LCLRTLVEHSGRVFRLQFD--EFQI-ISSSHDDTILIWDFLN 478 (499)
T ss_pred ----------------------hHHHhhhhccceeEEEeec--ceEE-EeccCCCeEEEEEcCC
Confidence 0011344577788888774 3455 9999999999999855
No 34
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.97 E-value=1.1e-27 Score=234.32 Aligned_cols=323 Identities=14% Similarity=0.127 Sum_probs=245.8
Q ss_pred CcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEee---ccCCccccccccccccccccccceeEEEeeecccc
Q 007234 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFA---DIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK 79 (612)
Q Consensus 3 s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~---~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~ 79 (612)
+.=|+++ .|||||++||+++.||++.+||-.+|+.+.++. .|.+.+..+.|+|+
T Consensus 190 skFV~~V--RysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPD--------------------- 246 (603)
T KOG0318|consen 190 SKFVNCV--RYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPD--------------------- 246 (603)
T ss_pred ccceeeE--EECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCC---------------------
Confidence 3446555 999999999999999999999999999999997 66666666666655
Q ss_pred cccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCC--CCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEec
Q 007234 80 KKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHP--GGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA 157 (612)
Q Consensus 80 ~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~--~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~ 157 (612)
+..+++++.|.+++|||+.++.++.++.-+.+ ..-.++-|- +..|++.+.+|+|.+++...+..+..+.+
T Consensus 247 ------s~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~G 318 (603)
T KOG0318|consen 247 ------STQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISG 318 (603)
T ss_pred ------CceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCChhheecc
Confidence 78899999999999999999999888765443 444555564 56899999999999999999999999999
Q ss_pred CCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEE-----------E--------------------E---------
Q 007234 158 STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQ-----------K--------------------F--------- 195 (612)
Q Consensus 158 ~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~-----------~--------------------~--------- 195 (612)
|...|+++..+||+++|++|+ |.|.-||..++..-+ . +
T Consensus 319 HnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~ 398 (603)
T KOG0318|consen 319 HNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTK 398 (603)
T ss_pred cccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccc
Confidence 999999999999999999999 999999986542110 0 0
Q ss_pred ---------------------------------ecC--------CCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCcc
Q 007234 196 ---------------------------------SGH--------PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK 234 (612)
Q Consensus 196 ---------------------------------~~h--------~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~ 234 (612)
+.+ .-...+++++|+++.++.++ .|+.|++|.+.....
T Consensus 399 ~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG-~Dgkvhvysl~g~~l 477 (603)
T KOG0318|consen 399 SEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGG-QDGKVHVYSLSGDEL 477 (603)
T ss_pred cceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEec-ccceEEEEEecCCcc
Confidence 000 01235678899999999988 799999999988764
Q ss_pred ccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccC-CceeEeecccccCCCCcccchh
Q 007234 235 QSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK-ATKILSSSEDVNSKSQKSATAA 313 (612)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~~~~~ 313 (612)
.. ......+...++.+.++ ||+.+|+++...+.+.+||..+.+.....- -+...+.+.. ++|+.+ .
T Consensus 478 ~e---e~~~~~h~a~iT~vayS-----pd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~a-WsP~n~----~ 544 (603)
T KOG0318|consen 478 KE---EAKLLEHRAAITDVAYS-----PDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVA-WSPNNK----L 544 (603)
T ss_pred cc---eeeeecccCCceEEEEC-----CCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEE-eCCCce----E
Confidence 31 22223344556778888 999999999999999999999887632211 1233334443 899988 9
Q ss_pred hhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceee
Q 007234 314 IFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (612)
Q Consensus 314 i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~ 379 (612)
+++|+.|.++.+|+.. ..... ..-...|...|..+.|-.+.. + +|.+.|..+|+|++
T Consensus 545 vATGSlDt~Viiysv~------kP~~~-i~iknAH~~gVn~v~wlde~t-v-vSsG~Da~iK~W~v 601 (603)
T KOG0318|consen 545 VATGSLDTNVIIYSVK------KPAKH-IIIKNAHLGGVNSVAWLDEST-V-VSSGQDANIKVWNV 601 (603)
T ss_pred EEeccccceEEEEEcc------Chhhh-eEeccccccCceeEEEecCce-E-EeccCcceeEEecc
Confidence 9999998766554411 11111 222235887899999965554 5 78888999999987
No 35
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.4e-28 Score=239.02 Aligned_cols=423 Identities=15% Similarity=0.178 Sum_probs=284.0
Q ss_pred cccceeEEEEcCCCC-EEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccc
Q 007234 4 SNIRDILTSFSPALD-YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (612)
Q Consensus 4 ~~V~~l~~~fspdg~-~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (612)
.+|.+| +|||... -+|+.+ .-++.||+..+.....++......+.+..|..+
T Consensus 27 ~~vssl--~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~D------------------------ 79 (487)
T KOG0310|consen 27 NSVSSL--CFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSD------------------------ 79 (487)
T ss_pred CcceeE--ecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhhccceeEEEeecC------------------------
Confidence 467667 9999553 355554 347999999988888777666666666666655
Q ss_pred ccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCC-CEEEEEecCCcEEEEECCCCceeEEEecCCCC
Q 007234 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHG-SCIYSAGADGMVCEIDPLTGSLLGKFRASTKG 161 (612)
Q Consensus 83 ~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~-~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~ 161 (612)
|.++++|...|.|+|||..+...+.. +.+|+.+|..+.|+|++ ..|++|+.|+.+++||+.+......+.+|++.
T Consensus 80 ---G~LlaaGD~sG~V~vfD~k~r~iLR~-~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDY 155 (487)
T KOG0310|consen 80 ---GRLLAAGDESGHVKVFDMKSRVILRQ-LYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDY 155 (487)
T ss_pred ---CeEEEccCCcCcEEEeccccHHHHHH-HhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcce
Confidence 99999999999999999776555544 47899999999999955 55888999999999999988876689999999
Q ss_pred eeEEEECCCCC-EEEEeC--CeEEEEEcCCC-eeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccc
Q 007234 162 ISCMAVSSDGK-MLATAA--GQLKTFNCSDH-KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA 237 (612)
Q Consensus 162 v~~l~~spdg~-~l~~~~--g~i~lwd~~~~-~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~ 237 (612)
|.|.+|+|-.. ++++|+ |.|++||.++. ..+.++. |..||..+.|-|.|..++++| ...|+|||+.++...
T Consensus 156 VR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAg--Gn~vkVWDl~~G~ql-- 230 (487)
T KOG0310|consen 156 VRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGSLIASAG--GNSVKVWDLTTGGQL-- 230 (487)
T ss_pred eEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCCEEEEcC--CCeEEEEEecCCcee--
Confidence 99999999655 667777 99999999987 6677775 999999999999999999886 568999999977644
Q ss_pred eeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhcc
Q 007234 238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAA 317 (612)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~ 317 (612)
+.....+...++|+.+. .++..|++++.||.+++||..+.+.+....
T Consensus 231 --l~~~~~H~KtVTcL~l~-----s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~-------------------------- 277 (487)
T KOG0310|consen 231 --LTSMFNHNKTVTCLRLA-----SDSTRLLSGSLDRHVKVFDTTNYKVVHSWK-------------------------- 277 (487)
T ss_pred --hhhhhcccceEEEEEee-----cCCceEeecccccceEEEEccceEEEEeee--------------------------
Confidence 22333344556777776 688999999999999999976665542110
Q ss_pred cccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceeeecceeecccCCccccccC
Q 007234 318 KLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNRVTALDRANAEDAVLP 397 (612)
Q Consensus 318 ~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~ 397 (612)
-.+.|.++++|||++.+ +.|..++.+....... + -++ .+
T Consensus 278 ------------------------------~~~pvLsiavs~dd~t~-viGmsnGlv~~rr~~~--k-~k~-------s~ 316 (487)
T KOG0310|consen 278 ------------------------------YPGPVLSIAVSPDDQTV-VIGMSNGLVSIRRREV--K-KKP-------SK 316 (487)
T ss_pred ------------------------------cccceeeEEecCCCceE-EEecccceeeeehhhc--c-cCC-------Cc
Confidence 12378999999999999 8887787775553210 0 000 00
Q ss_pred CCcccchhhhhhcccCCCCCccccccccccchhhhhhhhccCcccccccCCccCCHHHHHHhcCCCCCCCCCCCCchhhh
Q 007234 398 LPKILDSYDKKNRHQNLSSDLDEVMTDVVDSESQAKFMEIKDDKVEVEADSQTVCMEDRLRSLGILSNKDDLLSNSALEA 477 (612)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~l~~l~~~~~~~~~~~~~~~~~ 477 (612)
.++. ++.. ...... ....+....+.+|-.........-..++.+|+.....+ .+-.
T Consensus 317 ~~~~-------r~~r---~~~~~v-----~~r~~~~~~~~ddiv~n~~~r~~L~~~Dk~Lk~F~~kk---------ALd~ 372 (487)
T KOG0310|consen 317 EPKR-------RADR---SDGFFV-----KVRGQNYKGQKDDIVVNEVKRLKLTYFDKRLKQFKHKK---------ALDH 372 (487)
T ss_pred cccc-------cccc---cccceE-----eeeccccccccceeEeccccccCCchHHHHHhhhhHHH---------HHHH
Confidence 0000 0000 000000 00000000000000000000000111222222221100 0000
Q ss_pred hhh-ccc-----cccccC-ChhHHHHhhhccChhhHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHhcccccCCcChHH
Q 007234 478 TLF-NGI-----DFETNI-PVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNHGHHLLSQESLTP 550 (612)
Q Consensus 478 ~L~-~~l-----~~~~~~-~~~~I~~ti~~Lp~~~~~~lL~~l~~~l~~~~~~~~~~~~W~~~ll~~H~~~l~s~~~l~~ 550 (612)
+|- +.- .+++-+ ....+..++....-..+.+||.||.+.+.. +.-+..++.|+..+|-..+.-|...|.+..
T Consensus 373 vl~~~~~pelvvavl~eL~~Rg~l~~AL~grde~eL~~lLnfl~~~l~~-~rf~~~L~~~~~~iLd~Y~~~i~~s~~l~k 451 (487)
T KOG0310|consen 373 VLEPKKDPELVVAVLSELVHRGGLRRALAGRDESELAPLLNFLVKNLTV-VRFASILMEVVSVILDLYARDIEGSPMLAK 451 (487)
T ss_pred HhcccCChhHHHHHHHHHHHhhHHHHHhcCccHHHHHHHHHHHHhhccc-hhhHHHHHHHHHHHHHHHHhhhccCHHHHH
Confidence 110 000 111111 234677777788888889999999977744 445889999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 007234 551 MLSSLYKVFRS 561 (612)
Q Consensus 551 ~L~~l~~~l~~ 561 (612)
.+..|+..+++
T Consensus 452 ~i~~L~~~V~~ 462 (487)
T KOG0310|consen 452 LIQALRGKVEQ 462 (487)
T ss_pred HHHHHHHHHHH
Confidence 99999887764
No 36
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.97 E-value=9.2e-29 Score=238.87 Aligned_cols=248 Identities=13% Similarity=0.281 Sum_probs=215.5
Q ss_pred CcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccc
Q 007234 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (612)
Q Consensus 3 s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (612)
...|++| +|+.+|.+||+|+.||.++||+. +|..+.++..|.+++.++-|+..
T Consensus 235 nkdVT~L--~Wn~~G~~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~------------------------ 287 (524)
T KOG0273|consen 235 NKDVTSL--DWNNDGTLLATGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKK------------------------ 287 (524)
T ss_pred cCCcceE--EecCCCCeEEEeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCC------------------------
Confidence 3578666 99999999999999999999997 57788888888877776666655
Q ss_pred ccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCe
Q 007234 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI 162 (612)
Q Consensus 83 ~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v 162 (612)
+++|++++.||++.+||..+|...+.+ .-|..+-.++.|-.+ ..|++++.|+.|+++-+....++.++.+|.++|
T Consensus 288 ---G~yilS~~vD~ttilwd~~~g~~~q~f-~~~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V 362 (524)
T KOG0273|consen 288 ---GTYILSGGVDGTTILWDAHTGTVKQQF-EFHSAPALDVDWQSN-DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEV 362 (524)
T ss_pred ---CCEEEeccCCccEEEEeccCceEEEee-eeccCCccceEEecC-ceEeecCCCceEEEEEecCCCcceeeecccCce
Confidence 899999999999999999999998777 458887778888754 469999999999999999999999999999999
Q ss_pred eEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCC---------cEEEEEEcCCCeEEEEEcCC
Q 007234 163 SCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNG---------KYVLSSAVGERYIALWRTDG 231 (612)
Q Consensus 163 ~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~---------~~l~s~s~~d~~i~vwd~~~ 231 (612)
.++.|+|.|.+|++++ ++++||+.........+.+|...|..+.|+|+| ..+++++ .|++|++||+..
T Consensus 363 ~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas-~dstV~lwdv~~ 441 (524)
T KOG0273|consen 363 NALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASAS-FDSTVKLWDVES 441 (524)
T ss_pred EEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEee-cCCeEEEEEccC
Confidence 9999999999999998 999999999998999999999999999999964 3577777 699999999999
Q ss_pred CccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCc
Q 007234 232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKAT 293 (612)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~ 293 (612)
+.+ +..+..+...+..+.|+ |+|+++++|+.||.|++|+.++++..+.....
T Consensus 442 gv~-----i~~f~kH~~pVysvafS-----~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~ 493 (524)
T KOG0273|consen 442 GVP-----IHTLMKHQEPVYSVAFS-----PNGRYLASGSLDGCVHIWSTKTGKLVKSYQGT 493 (524)
T ss_pred Cce-----eEeeccCCCceEEEEec-----CCCcEEEecCCCCeeEeccccchheeEeecCC
Confidence 874 45564444555667787 99999999999999999999999988766544
No 37
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.97 E-value=7.8e-30 Score=247.26 Aligned_cols=285 Identities=11% Similarity=0.127 Sum_probs=233.1
Q ss_pred CCcccceeEEEEcC-CCCEEEEEeCCCcEEEEECCC-CcEEEEeeccCCccccccccccccccccccceeEEEeeecccc
Q 007234 2 GSSNIRDILTSFSP-ALDYFAICSGDARIKIWDTLK-GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK 79 (612)
Q Consensus 2 ~s~~V~~l~~~fsp-dg~~las~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~ 79 (612)
|+..|.++ .|.| .+.+|++++.|+.|+|||+.. ++++++|.+|..+|..+.|+..
T Consensus 213 H~kgvsai--~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~--------------------- 269 (503)
T KOG0282|consen 213 HTKGVSAI--QWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNC--------------------- 269 (503)
T ss_pred Cccccchh--hhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhcccc---------------------
Confidence 35567666 9999 899999999999999999987 8999999999999999999988
Q ss_pred cccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCC-CEEEEEecCCcEEEEECCCCceeEEEecC
Q 007234 80 KKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHG-SCIYSAGADGMVCEIDPLTGSLLGKFRAS 158 (612)
Q Consensus 80 ~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~-~~l~s~s~dg~v~iwd~~~~~~~~~~~~~ 158 (612)
+..+++++-|+.|++||+++|+++.++. ....++|+.|+|++ +.|++|+.|+.|+.||+++++.++.+..|
T Consensus 270 ------g~~fLS~sfD~~lKlwDtETG~~~~~f~--~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~h 341 (503)
T KOG0282|consen 270 ------GTSFLSASFDRFLKLWDTETGQVLSRFH--LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRH 341 (503)
T ss_pred ------CCeeeeeecceeeeeeccccceEEEEEe--cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhh
Confidence 8899999999999999999999998874 34578999999988 78999999999999999999999999999
Q ss_pred CCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEe-cCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccc
Q 007234 159 TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS-GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ 235 (612)
Q Consensus 159 ~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~-~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~ 235 (612)
-+.|..+.|-++|+.+++++ +++++|+.+.+-.++... .+.....++..+|++++++.-+ .|+.|.++.+...-..
T Consensus 342 Lg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs-~dN~i~ifs~~~~~r~ 420 (503)
T KOG0282|consen 342 LGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQS-MDNYIAIFSTVPPFRL 420 (503)
T ss_pred hhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhc-cCceEEEEeccccccc
Confidence 99999999999999999988 899999999886655432 2334466889999999999887 6999999997654333
Q ss_pred cceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhh
Q 007234 236 SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIF 315 (612)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~ 315 (612)
.....+....-......+.|+ |||.+|++|+.||.+.+||.++-+.+.
T Consensus 421 nkkK~feGh~vaGys~~v~fS-----pDG~~l~SGdsdG~v~~wdwkt~kl~~--------------------------- 468 (503)
T KOG0282|consen 421 NKKKRFEGHSVAGYSCQVDFS-----PDGRTLCSGDSDGKVNFWDWKTTKLVS--------------------------- 468 (503)
T ss_pred CHhhhhcceeccCceeeEEEc-----CCCCeEEeecCCccEEEeechhhhhhh---------------------------
Confidence 222223222222233445566 999999999999999999987776543
Q ss_pred cccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeeccee
Q 007234 316 AAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY 378 (612)
Q Consensus 316 ~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~ 378 (612)
++..|.+.++.+.|.|-..--++|++.||.|++|+
T Consensus 469 ----------------------------~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 469 ----------------------------KLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred ----------------------------ccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 33455556777778876655448999999999985
No 38
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3.3e-29 Score=234.72 Aligned_cols=238 Identities=20% Similarity=0.333 Sum_probs=211.4
Q ss_pred CcccceeEEEEcCCCCEEEEEeCCCcEEEEECCC-CcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLK-GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (612)
Q Consensus 3 s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (612)
...|.++ +|+..|+++|+++.|=.+++||.++ .+++....+|...+.+..|-+.
T Consensus 150 t~sv~di--~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~----------------------- 204 (406)
T KOG0295|consen 150 TDSVFDI--SFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPL----------------------- 204 (406)
T ss_pred ccceeEE--EEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEec-----------------------
Confidence 3457556 9999999999999998899999986 4567767666666655555554
Q ss_pred cccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCC
Q 007234 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG 161 (612)
Q Consensus 82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~ 161 (612)
+.+|++++.|.+|+.|++.+|.++.++ .+|..-|.-+..+.||..+++|+.|.+|++|-+.++++...++.|+.+
T Consensus 205 ----gd~ilS~srD~tik~We~~tg~cv~t~-~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~ 279 (406)
T KOG0295|consen 205 ----GDHILSCSRDNTIKAWECDTGYCVKTF-PGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHP 279 (406)
T ss_pred ----CCeeeecccccceeEEecccceeEEec-cCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccc
Confidence 789999999999999999999999887 689999999999999999999999999999999999999999999999
Q ss_pred eeEEEECCC---------------CCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeE
Q 007234 162 ISCMAVSSD---------------GKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYI 224 (612)
Q Consensus 162 v~~l~~spd---------------g~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i 224 (612)
|.|++|.|. +.++++++ ++|++||+.++.++.++.||.+.|..++|+|.|+||++++ +|+++
T Consensus 280 vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~Sca-DDktl 358 (406)
T KOG0295|consen 280 VECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCA-DDKTL 358 (406)
T ss_pred eEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEe-cCCcE
Confidence 999999863 25888888 8999999999999999999999999999999999999998 79999
Q ss_pred EEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEEC
Q 007234 225 ALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (612)
Q Consensus 225 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~ 281 (612)
++||+.+.. |......+..++.+..|. .+.-++++|+.|-.+++|..
T Consensus 359 rvwdl~~~~-----cmk~~~ah~hfvt~lDfh-----~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 359 RVWDLKNLQ-----CMKTLEAHEHFVTSLDFH-----KTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred EEEEeccce-----eeeccCCCcceeEEEecC-----CCCceEEeccccceeeeeec
Confidence 999999987 556777788888889997 67779999999999999974
No 39
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.97 E-value=3.7e-27 Score=242.16 Aligned_cols=310 Identities=15% Similarity=0.195 Sum_probs=242.7
Q ss_pred EcCCC--CEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEE
Q 007234 13 FSPAL--DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV 90 (612)
Q Consensus 13 fspdg--~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~ 90 (612)
++|+. +.++.|+.+|.+++||+++++.+.+|+++...++++.-++. -+.++
T Consensus 166 ~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPa---------------------------LDVVa 218 (910)
T KOG1539|consen 166 LHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPA---------------------------LDVVA 218 (910)
T ss_pred ecchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCc---------------------------ceEEE
Confidence 67765 56889999999999999999999999988877776666665 67899
Q ss_pred EEECCCcEEEEEcCCCeEEEEeccCC-CCCeEEEEEecCCCE-EEEEecCCcEEEEECCCCceeEEEe------------
Q 007234 91 LGTGGGDVLALAVSAGQLKWRLSDCH-PGGVSAISFATHGSC-IYSAGADGMVCEIDPLTGSLLGKFR------------ 156 (612)
Q Consensus 91 ~gs~~g~I~vwd~~~~~~~~~~~~~h-~~~V~~l~~sp~~~~-l~s~s~dg~v~iwd~~~~~~~~~~~------------ 156 (612)
+|..+|+|.++|++.++.+..+. | .++|++++|..||.. +++|+..|.+.+||++..+.+..++
T Consensus 219 iG~~~G~ViifNlK~dkil~sFk--~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~f 296 (910)
T KOG1539|consen 219 IGLENGTVIIFNLKFDKILMSFK--QDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATF 296 (910)
T ss_pred EeccCceEEEEEcccCcEEEEEE--ccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCccccee
Confidence 99999999999999999998884 5 499999999999876 6666777999999987532211111
Q ss_pred --------------------------------------------------------------------------------
Q 007234 157 -------------------------------------------------------------------------------- 156 (612)
Q Consensus 157 -------------------------------------------------------------------------------- 156 (612)
T Consensus 297 l~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~ 376 (910)
T KOG1539|consen 297 LPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQL 376 (910)
T ss_pred cCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccc
Confidence
Q ss_pred ---------------------------------------------------------------cCC------CCeeEEEE
Q 007234 157 ---------------------------------------------------------------AST------KGISCMAV 167 (612)
Q Consensus 157 ---------------------------------------------------------------~~~------~~v~~l~~ 167 (612)
.+. ..+++++.
T Consensus 377 ~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~v 456 (910)
T KOG1539|consen 377 HNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCV 456 (910)
T ss_pred ccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEE
Confidence 001 24567778
Q ss_pred CCCCCEEEEeC--CeEEEEEcCCCeeEEEE---ecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEe
Q 007234 168 SSDGKMLATAA--GQLKTFNCSDHKKMQKF---SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLA 242 (612)
Q Consensus 168 spdg~~l~~~~--g~i~lwd~~~~~~~~~~---~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~ 242 (612)
++-|++.+.|. |.|-+|++++|-...++ +.|.++|++++...-++.+++++ .+|.+++||..+.... ....
T Consensus 457 s~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~-~~Gilkfw~f~~k~l~---~~l~ 532 (910)
T KOG1539|consen 457 SFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAG-ADGILKFWDFKKKVLK---KSLR 532 (910)
T ss_pred eccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEcc-CcceEEEEecCCccee---eeec
Confidence 88888888887 89999999999888888 58999999999998889999998 6999999999887633 2222
Q ss_pred ecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhcccccce
Q 007234 243 MEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDI 322 (612)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~ 322 (612)
+.+.... .+ .. .....++.+..|=.|.++|..+.+.++.+.++...+.... |||+++ ++++++.|+.
T Consensus 533 l~~~~~~--iv-~h-----r~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~-FS~Dgr----WlisasmD~t 599 (910)
T KOG1539|consen 533 LGSSITG--IV-YH-----RVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMT-FSPDGR----WLISASMDST 599 (910)
T ss_pred cCCCcce--ee-ee-----ehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeE-eCCCCc----EEEEeecCCc
Confidence 3222222 22 22 4557788889999999999999999998888877777655 999999 9999999999
Q ss_pred ecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccce-eeeccee
Q 007234 323 VKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLL-KSKRGRY 378 (612)
Q Consensus 323 ~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d-~~~~~w~ 378 (612)
+++|| ++.|.. ...+. -....+++.|||+|.+| ++...| .-+.+|.
T Consensus 600 Ir~wD----lpt~~l----ID~~~-vd~~~~sls~SPngD~L-AT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 600 IRTWD----LPTGTL----IDGLL-VDSPCTSLSFSPNGDFL-ATVHVDQNGIYLWS 646 (910)
T ss_pred EEEEe----ccCcce----eeeEe-cCCcceeeEECCCCCEE-EEEEecCceEEEEE
Confidence 99998 222221 21222 23478999999999999 777666 8889994
No 40
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.97 E-value=6.1e-30 Score=242.80 Aligned_cols=240 Identities=15% Similarity=0.183 Sum_probs=202.9
Q ss_pred CCCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeec-cCCccccccccccccccccccceeEEEeeecccc
Q 007234 1 MGSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFAD-IASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK 79 (612)
Q Consensus 1 ~~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~ 79 (612)
+|.++|+.+ .||++|.++++|+.+|.|++|+..-.. ++.++. |...|.+++|++.
T Consensus 136 aHDs~Vr~m--~ws~~g~wmiSgD~gG~iKyWqpnmnn-Vk~~~ahh~eaIRdlafSpn--------------------- 191 (464)
T KOG0284|consen 136 AHDSPVRTM--KWSHNGTWMISGDKGGMIKYWQPNMNN-VKIIQAHHAEAIRDLAFSPN--------------------- 191 (464)
T ss_pred hhcccceeE--EEccCCCEEEEcCCCceEEecccchhh-hHHhhHhhhhhhheeccCCC---------------------
Confidence 367899877 999999999999999999999986443 334443 3366666666665
Q ss_pred cccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCC
Q 007234 80 KKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST 159 (612)
Q Consensus 80 ~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~ 159 (612)
+..+++++.||.|+|||....+....+ .+|.-.|.++.|+|....++++|.|..|++||.++|.++.++.+|+
T Consensus 192 ------DskF~t~SdDg~ikiWdf~~~kee~vL-~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HK 264 (464)
T KOG0284|consen 192 ------DSKFLTCSDDGTIKIWDFRMPKEERVL-RGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHK 264 (464)
T ss_pred ------CceeEEecCCCeEEEEeccCCchhhee-ccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhcc
Confidence 677999999999999999988776555 7899999999999999999999999999999999999999999999
Q ss_pred CCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccc
Q 007234 160 KGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA 237 (612)
Q Consensus 160 ~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~ 237 (612)
..|..+.|+|++++|++++ ..++++|+++.+.+..+++|...|+++.|+|-..-|++++..||.|..|.+...+..
T Consensus 265 ntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~-- 342 (464)
T KOG0284|consen 265 NTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPL-- 342 (464)
T ss_pred ceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccc--
Confidence 9999999999999999999 799999999999999999999999999999976555554458999999999855433
Q ss_pred eeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEE
Q 007234 238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY 280 (612)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd 280 (612)
..... .+...+-.+.+. |=|..|++|+.|.++++|.
T Consensus 343 -~~i~~-AHd~~iwsl~~h-----PlGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 343 -GEIPP-AHDGEIWSLAYH-----PLGHILATGSNDRTVRFWT 378 (464)
T ss_pred -cCCCc-ccccceeeeecc-----ccceeEeecCCCcceeeec
Confidence 12222 344444556665 9999999999999999996
No 41
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=2.7e-28 Score=247.52 Aligned_cols=322 Identities=17% Similarity=0.165 Sum_probs=235.8
Q ss_pred ccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccccc
Q 007234 5 NIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (612)
Q Consensus 5 ~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (612)
+|.++ +-+||.-+||.|..||.|+||+..++....+|.+|...|+.+-|...
T Consensus 67 evt~l--~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~-------------------------- 118 (888)
T KOG0306|consen 67 EVTCL--RSSDDILLLAVGYADGSVQIFSLESEEILITFNGHKAAVTTLKFDKI-------------------------- 118 (888)
T ss_pred eEEEe--eccCCcceEEEEecCceEEeeccCCCceeeeecccccceEEEEEccc--------------------------
Confidence 56433 77789999999999999999999999999999999887777777766
Q ss_pred CCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeE
Q 007234 85 GSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISC 164 (612)
Q Consensus 85 ~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~ 164 (612)
|..+++|+.|+.|.+||+-......++ .+|...|+..-|..+.++++++|.|+.|++||+.+..+..+.-.|.+.++.
T Consensus 119 -G~rlaSGskDt~IIvwDlV~E~Gl~rL-~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~ 196 (888)
T KOG0306|consen 119 -GTRLASGSKDTDIIVWDLVGEEGLFRL-RGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWA 196 (888)
T ss_pred -CceEeecCCCccEEEEEeccceeeEEe-ecchHHHhHHhccCCCeEEEEeccCceEEEEecccceeeeEEecccceEEE
Confidence 899999999999999999888777777 689999999999988889999999999999999999988888888888888
Q ss_pred EEECCCCCEEEEeC--CeEEEEEcCC-----------------------------------Ce-----------------
Q 007234 165 MAVSSDGKMLATAA--GQLKTFNCSD-----------------------------------HK----------------- 190 (612)
Q Consensus 165 l~~spdg~~l~~~~--g~i~lwd~~~-----------------------------------~~----------------- 190 (612)
+++++ +.++++. +.+++|++.. .+
T Consensus 197 l~~~~--~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~ 274 (888)
T KOG0306|consen 197 LVLDE--KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIR 274 (888)
T ss_pred EEEec--ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeec
Confidence 88876 3444443 6777776600 00
Q ss_pred ------------------------------------------------------------e-------------------
Q 007234 191 ------------------------------------------------------------K------------------- 191 (612)
Q Consensus 191 ------------------------------------------------------------~------------------- 191 (612)
.
T Consensus 275 s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s 354 (888)
T KOG0306|consen 275 SKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENS 354 (888)
T ss_pred CHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccC
Confidence 0
Q ss_pred -----------EEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccc-ee--------------------
Q 007234 192 -----------MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA-SC-------------------- 239 (612)
Q Consensus 192 -----------~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~-~~-------------------- 239 (612)
-.++.||...|.++++|.+...+++++ .+.+++|+..+.+.... .+
T Consensus 355 ~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga--~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k 432 (888)
T KOG0306|consen 355 GKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGA--GESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTK 432 (888)
T ss_pred CCCCccccccceeeeccchhheeEEEeecCceeeeecC--CCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEecc
Confidence 002458888888888888877777664 56788888776553310 00
Q ss_pred --------------eEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcce--------ecccCCce---
Q 007234 240 --------------VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE--------LRNTKATK--- 294 (612)
Q Consensus 240 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~--------~~~~~~~~--- 294 (612)
+.....|...+-.+..+ ||+..+++||.|.+|++||..-... +.-.+...
T Consensus 433 ~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~-----pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel 507 (888)
T KOG0306|consen 433 NGELQVFDLASASLVETIRAHDGAIWSISLS-----PDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLEL 507 (888)
T ss_pred CCceEEEEeehhhhhhhhhccccceeeeeec-----CCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEec
Confidence 01111222333334443 9999999999999999999532221 11111111
Q ss_pred -eEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceee
Q 007234 295 -ILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKS 373 (612)
Q Consensus 295 -~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~ 373 (612)
..+-|. .+||+++ .++.+-.|.++.++- .+ ....+-++.+|.=+|.|+..|||++++ +|||.|++
T Consensus 508 ~ddvL~v-~~Spdgk----~LaVsLLdnTVkVyf-----lD---tlKFflsLYGHkLPV~smDIS~DSkli-vTgSADKn 573 (888)
T KOG0306|consen 508 EDDVLCV-SVSPDGK----LLAVSLLDNTVKVYF-----LD---TLKFFLSLYGHKLPVLSMDISPDSKLI-VTGSADKN 573 (888)
T ss_pred cccEEEE-EEcCCCc----EEEEEeccCeEEEEE-----ec---ceeeeeeecccccceeEEeccCCcCeE-EeccCCCc
Confidence 122222 2789998 888888876554321 11 223455788999999999999999999 99999999
Q ss_pred ecceee
Q 007234 374 KRGRYV 379 (612)
Q Consensus 374 ~~~w~~ 379 (612)
+++|-+
T Consensus 574 VKiWGL 579 (888)
T KOG0306|consen 574 VKIWGL 579 (888)
T ss_pred eEEecc
Confidence 999965
No 42
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=3.7e-28 Score=246.56 Aligned_cols=272 Identities=17% Similarity=0.219 Sum_probs=223.7
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEE
Q 007234 12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL 91 (612)
Q Consensus 12 ~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~ 91 (612)
-+.|+.++||.+++.+.+|+|+..+..+. .+.+|...+.++.. |.+ +.++++
T Consensus 331 ~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~-----------------~~~----------g~llat 382 (775)
T KOG0319|consen 331 FLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDV-----------------WSS----------GDLLAT 382 (775)
T ss_pred ecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeee-----------------ccc----------CcEEEE
Confidence 35678899999999999999999888776 66777665553332 221 679999
Q ss_pred EECCCcEEEEEcCCCeEEE---EeccCCCCCeEEEEEecCC-CEEEEEecCCcEEEEECCCCce-----e----EEEecC
Q 007234 92 GTGGGDVLALAVSAGQLKW---RLSDCHPGGVSAISFATHG-SCIYSAGADGMVCEIDPLTGSL-----L----GKFRAS 158 (612)
Q Consensus 92 gs~~g~I~vwd~~~~~~~~---~~~~~h~~~V~~l~~sp~~-~~l~s~s~dg~v~iwd~~~~~~-----~----~~~~~~ 158 (612)
|+.|.++++|.++.+.... ....+|++.|.+++++..+ .+|+++|.|+++++|++...+. + .+...|
T Consensus 383 ~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aH 462 (775)
T KOG0319|consen 383 GSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAH 462 (775)
T ss_pred ecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhh
Confidence 9999999999885544321 2226899999999997754 4699999999999999876221 1 123468
Q ss_pred CCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCcccc
Q 007234 159 TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS 236 (612)
Q Consensus 159 ~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~ 236 (612)
...|+|++++|+.+++|+|+ .+.++|++........+.||...|.++.|+|..+.+++++ .|++|+||.+.+..
T Consensus 463 dKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~S-gD~TvKIW~is~fS--- 538 (775)
T KOG0319|consen 463 DKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCS-GDKTVKIWSISTFS--- 538 (775)
T ss_pred cccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEecc-CCceEEEEEeccce---
Confidence 88999999999999999999 8999999999999999999999999999999999999987 79999999999986
Q ss_pred ceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhc
Q 007234 237 ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFA 316 (612)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~ 316 (612)
|+.++.++...+--+.|- .+|+.|++++.||.|++|++++.+.+.
T Consensus 539 --ClkT~eGH~~aVlra~F~-----~~~~qliS~~adGliKlWnikt~eC~~---------------------------- 583 (775)
T KOG0319|consen 539 --CLKTFEGHTSAVLRASFI-----RNGKQLISAGADGLIKLWNIKTNECEM---------------------------- 583 (775)
T ss_pred --eeeeecCccceeEeeeee-----eCCcEEEeccCCCcEEEEeccchhhhh----------------------------
Confidence 667787444444444454 788999999999999999998876643
Q ss_pred ccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeeccee
Q 007234 317 AKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY 378 (612)
Q Consensus 317 ~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~ 378 (612)
++..|.+.||.++.++++..+ +||+.|+.+-+|.
T Consensus 584 ---------------------------tlD~H~DrvWaL~~~~~~~~~-~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 584 ---------------------------TLDAHNDRVWALSVSPLLDMF-VTGGGDGRIIFWK 617 (775)
T ss_pred ---------------------------hhhhccceeEEEeecCcccee-EecCCCeEEEEee
Confidence 445788899999999999988 9999999999995
No 43
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.96 E-value=5.1e-29 Score=222.08 Aligned_cols=279 Identities=14% Similarity=0.151 Sum_probs=234.0
Q ss_pred CCcccceeEEEEcC---CCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccc
Q 007234 2 GSSNIRDILTSFSP---ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDR 78 (612)
Q Consensus 2 ~s~~V~~l~~~fsp---dg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~ 78 (612)
++.||-.| +||| +|-+|++++.||.-.+=+-++|.-+-+|.+|.+.|.+.....+
T Consensus 13 htrpvvdl--~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~n-------------------- 70 (334)
T KOG0278|consen 13 HTRPVVDL--AFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKN-------------------- 70 (334)
T ss_pred CCcceeEE--eccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCch--------------------
Confidence 46788444 9987 8889999999999999899999999999999998877666655
Q ss_pred ccccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCc-eeEEEec
Q 007234 79 KKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS-LLGKFRA 157 (612)
Q Consensus 79 ~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~-~~~~~~~ 157 (612)
....++++.|-+-+|||..+|..+..+. |.--|.+++|+.|.++|++|+.+..+++||++..+ +...+.+
T Consensus 71 -------a~~aasaaadftakvw~a~tgdelhsf~--hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~g 141 (334)
T KOG0278|consen 71 -------ATRAASAAADFTAKVWDAVTGDELHSFE--HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISG 141 (334)
T ss_pred -------hhhhhhhcccchhhhhhhhhhhhhhhhh--hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcC
Confidence 4456788889999999999999988873 77889999999999999999999999999998764 5677899
Q ss_pred CCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccc
Q 007234 158 STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ 235 (612)
Q Consensus 158 ~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~ 235 (612)
|.+.|..+.|....+.++++. ++|++||.++++.++++. ...+|+++.++++|.++.++ ..+.|..||..+-...
T Consensus 142 htg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia--~gssV~Fwdaksf~~l 218 (334)
T KOG0278|consen 142 HTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIA--YGSSVKFWDAKSFGLL 218 (334)
T ss_pred CCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEe--cCceeEEeccccccce
Confidence 999999999988777777755 999999999999999987 57789999999999977664 4778999999887644
Q ss_pred cceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhh
Q 007234 236 SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIF 315 (612)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~ 315 (612)
....-+.. +...... |+...+++|++|+.++.||..+++.+..
T Consensus 219 -----Ks~k~P~n-V~SASL~-----P~k~~fVaGged~~~~kfDy~TgeEi~~-------------------------- 261 (334)
T KOG0278|consen 219 -----KSYKMPCN-VESASLH-----PKKEFFVAGGEDFKVYKFDYNTGEEIGS-------------------------- 261 (334)
T ss_pred -----eeccCccc-ccccccc-----CCCceEEecCcceEEEEEeccCCceeee--------------------------
Confidence 22222322 3444555 8999999999999999999999987531
Q ss_pred cccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceeee
Q 007234 316 AAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (612)
Q Consensus 316 ~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~~ 380 (612)
-..+|.+.|.|+.|||||..- ++||.|+++|+|...
T Consensus 262 ----------------------------~nkgh~gpVhcVrFSPdGE~y-AsGSEDGTirlWQt~ 297 (334)
T KOG0278|consen 262 ----------------------------YNKGHFGPVHCVRFSPDGELY-ASGSEDGTIRLWQTT 297 (334)
T ss_pred ----------------------------cccCCCCceEEEEECCCCcee-eccCCCceEEEEEec
Confidence 024788899999999999999 999999999999763
No 44
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=8.9e-27 Score=215.63 Aligned_cols=249 Identities=16% Similarity=0.205 Sum_probs=202.7
Q ss_pred cccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccc
Q 007234 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (612)
Q Consensus 4 ~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (612)
..|.++ .|+++|+++++++.|.++++||..+|+.++++..+..++....|.+.
T Consensus 15 ~~i~sl--~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~------------------------- 67 (311)
T KOG1446|consen 15 GKINSL--DFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHH------------------------- 67 (311)
T ss_pred CceeEE--EecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecC-------------------------
Confidence 467555 99999999999999999999999999999999877666666666655
Q ss_pred cCCcEEEEEEC--CCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCC
Q 007234 84 LGSSLLVLGTG--GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG 161 (612)
Q Consensus 84 ~~~~~l~~gs~--~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~ 161 (612)
...++.++. |.+|+..++.+++.++.+ .||...|++++.+|-+..+++++.|++|++||++..++...+.....
T Consensus 68 --~~~~i~sStk~d~tIryLsl~dNkylRYF-~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~- 143 (311)
T KOG1446|consen 68 --SNTVIHSSTKEDDTIRYLSLHDNKYLRYF-PGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR- 143 (311)
T ss_pred --CceEEEccCCCCCceEEEEeecCceEEEc-CCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC-
Confidence 455666666 677999999999999555 89999999999999889999999999999999998888877765444
Q ss_pred eeEEEECCCCCEEEEeC--CeEEEEEcCCC--eeEEEEe---cCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCcc
Q 007234 162 ISCMAVSSDGKMLATAA--GQLKTFNCSDH--KKMQKFS---GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK 234 (612)
Q Consensus 162 v~~l~~spdg~~l~~~~--g~i~lwd~~~~--~~~~~~~---~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~ 234 (612)
..++|+|+|-++|++. +.|++||++.- .+..++. +.....+.+.|||||++++.+. ..+.+.+.|.-.|..
T Consensus 144 -pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT-~~s~~~~lDAf~G~~ 221 (311)
T KOG1446|consen 144 -PIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLST-NASFIYLLDAFDGTV 221 (311)
T ss_pred -cceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEe-CCCcEEEEEccCCcE
Confidence 4578999999999998 48999999864 3445553 3466789999999999999887 688999999999875
Q ss_pred ccceeeEeec-CCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCc
Q 007234 235 QSASCVLAME-HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKAT 293 (612)
Q Consensus 235 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~ 293 (612)
. ..+... ......-.++|. ||++++++|+.||+|++|+++++..+....+.
T Consensus 222 ~---~tfs~~~~~~~~~~~a~ft-----Pds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~ 273 (311)
T KOG1446|consen 222 K---STFSGYPNAGNLPLSATFT-----PDSKFVLSGSDDGTIHVWNLETGKKVAVLRGP 273 (311)
T ss_pred e---eeEeeccCCCCcceeEEEC-----CCCcEEEEecCCCcEEEEEcCCCcEeeEecCC
Confidence 4 233332 222233456676 99999999999999999999999888666553
No 45
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=3e-28 Score=250.79 Aligned_cols=252 Identities=16% Similarity=0.220 Sum_probs=222.1
Q ss_pred CcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccc
Q 007234 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (612)
Q Consensus 3 s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (612)
++.|+.+ +|+|...++.++-..|.|++||.+=+.++..|..|.++|..+.|.+.
T Consensus 9 SsRvKgl--sFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~------------------------ 62 (1202)
T KOG0292|consen 9 SSRVKGL--SFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPT------------------------ 62 (1202)
T ss_pred cccccce--ecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCC------------------------
Confidence 5677778 99999999999999999999999999999999999999999999988
Q ss_pred ccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCe
Q 007234 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI 162 (612)
Q Consensus 83 ~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v 162 (612)
+.++++|+.|..|+||+..+.+++.++ .+|-..|..+.|++.-.++++||.|.+|++|+..+++++..+.+|..-|
T Consensus 63 ---qplFVSGGDDykIkVWnYk~rrclftL-~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYV 138 (1202)
T KOG0292|consen 63 ---QPLFVSGGDDYKIKVWNYKTRRCLFTL-LGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYV 138 (1202)
T ss_pred ---CCeEEecCCccEEEEEecccceehhhh-ccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEE
Confidence 889999999999999999999999888 5899999999999999999999999999999999999999999999999
Q ss_pred eEEEECCCCCEEEEeC--CeEEEEEcCCC----------------------------e-eEEEEecCCCCEEEEEEeeCC
Q 007234 163 SCMAVSSDGKMLATAA--GQLKTFNCSDH----------------------------K-KMQKFSGHPGAVRFMTFSDNG 211 (612)
Q Consensus 163 ~~l~~spdg~~l~~~~--g~i~lwd~~~~----------------------------~-~~~~~~~h~~~v~~l~~sp~~ 211 (612)
.|..|+|...++++++ .+|++||+..- . ....+.||...|+-++|+|.-
T Consensus 139 McAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTl 218 (1202)
T KOG0292|consen 139 MCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTL 218 (1202)
T ss_pred EeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCc
Confidence 9999999999999999 89999998421 0 123457999999999999999
Q ss_pred cEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccC
Q 007234 212 KYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK 291 (612)
Q Consensus 212 ~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~ 291 (612)
..+++++ +|+.|++|.+...+.- .+-+...+-..++++-|. |...++++.++|+.|++||+...+.++++.
T Consensus 219 pliVSG~-DDRqVKlWrmnetKaW---EvDtcrgH~nnVssvlfh-----p~q~lIlSnsEDksirVwDm~kRt~v~tfr 289 (1202)
T KOG0292|consen 219 PLIVSGA-DDRQVKLWRMNETKAW---EVDTCRGHYNNVSSVLFH-----PHQDLILSNSEDKSIRVWDMTKRTSVQTFR 289 (1202)
T ss_pred ceEEecC-CcceeeEEEeccccce---eehhhhcccCCcceEEec-----CccceeEecCCCccEEEEecccccceeeee
Confidence 9999987 7999999999876522 233344555556667776 888999999999999999998888777664
Q ss_pred Cc
Q 007234 292 AT 293 (612)
Q Consensus 292 ~~ 293 (612)
..
T Consensus 290 re 291 (1202)
T KOG0292|consen 290 RE 291 (1202)
T ss_pred cc
Confidence 43
No 46
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=1.8e-27 Score=250.80 Aligned_cols=238 Identities=24% Similarity=0.389 Sum_probs=204.3
Q ss_pred CcccceeEEEEcCCCCEEEEEeCCCcEEEEEC-CCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDT-LKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (612)
Q Consensus 3 s~~V~~l~~~fspdg~~las~s~dg~i~iwd~-~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (612)
...|+.+ +|+|||+++++++.|++|+|||+ ..+..++++.+|...+.++.|++.
T Consensus 203 ~~~v~~~--~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~----------------------- 257 (456)
T KOG0266|consen 203 TRGVSDV--AFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPD----------------------- 257 (456)
T ss_pred ccceeee--EECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCC-----------------------
Confidence 4567666 99999999999999999999999 666899999999998888888887
Q ss_pred cccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCc--eeEEEecCC
Q 007234 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS--LLGKFRAST 159 (612)
Q Consensus 82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~--~~~~~~~~~ 159 (612)
++++++|+.|++|+|||+.++++...+ .+|.+.|++++|+++++.|++++.|+.|++||+.++. +...+..+.
T Consensus 258 ----g~~i~Sgs~D~tvriWd~~~~~~~~~l-~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~ 332 (456)
T KOG0266|consen 258 ----GNLLVSGSDDGTVRIWDVRTGECVRKL-KGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAE 332 (456)
T ss_pred ----CCEEEEecCCCcEEEEeccCCeEEEee-eccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCC
Confidence 889999999999999999999999777 6899999999999999999999999999999999998 567777665
Q ss_pred CC--eeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEE---EEEEeeCCcEEEEEEcCCCeEEEEEcCCC
Q 007234 160 KG--ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVR---FMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (612)
Q Consensus 160 ~~--v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~---~l~~sp~~~~l~s~s~~d~~i~vwd~~~~ 232 (612)
.. +++++|+|++++++++. +.+++||+..+..+..+.+|...+. +..+++.++++++++ .|+.|.+|++.++
T Consensus 333 ~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~-~d~~v~~~~~~s~ 411 (456)
T KOG0266|consen 333 NSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGS-EDGSVYVWDSSSG 411 (456)
T ss_pred CCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEe-CCceEEEEeCCcc
Confidence 55 99999999999999998 6999999999999999999988643 334567899999987 8999999999986
Q ss_pred ccccceeeEeecCC-ceeEEeEEecCCccCCCCcEEEEEe--cCCcEEEEEC
Q 007234 233 KKQSASCVLAMEHP-AVFMDCRCIDNGGVDDAGLYVLAIS--ETGVCYIWYG 281 (612)
Q Consensus 233 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~t~s--~dg~i~iwd~ 281 (612)
... ..+..+ ...+....+. +...++++++ .|+.+++|..
T Consensus 412 ~~~-----~~l~~h~~~~~~~~~~~-----~~~~~~~s~s~~~d~~~~~w~~ 453 (456)
T KOG0266|consen 412 GIL-----QRLEGHSKAAVSDLSSH-----PTENLIASSSFEGDGLIRLWKY 453 (456)
T ss_pred chh-----hhhcCCCCCceeccccC-----CCcCeeeecCcCCCceEEEecC
Confidence 543 233333 4444555555 8889999998 6889999964
No 47
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.96 E-value=8.1e-28 Score=224.66 Aligned_cols=226 Identities=17% Similarity=0.246 Sum_probs=199.1
Q ss_pred CcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEE
Q 007234 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCM 165 (612)
Q Consensus 86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l 165 (612)
+..+++|+.|++|+|||+.+|+...++ .+|...|.++++|+...++++|+.|+.|++||+...+.++.+.+|-..|.|+
T Consensus 163 n~wf~tgs~DrtikIwDlatg~Lkltl-tGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L 241 (460)
T KOG0285|consen 163 NEWFATGSADRTIKIWDLATGQLKLTL-TGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCL 241 (460)
T ss_pred ceeEEecCCCceeEEEEcccCeEEEee-cchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEE
Confidence 789999999999999999999998777 6899999999999999999999999999999999999999999999999999
Q ss_pred EECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEee
Q 007234 166 AVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAM 243 (612)
Q Consensus 166 ~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~ 243 (612)
+.+|.-..|++|+ .++++||+++...+..+.||..+|.++.+.|....+++++ .|++|++||+..++.. .++
T Consensus 242 ~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S-~D~tvrlWDl~agkt~-----~tl 315 (460)
T KOG0285|consen 242 DLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGS-HDSTVRLWDLRAGKTM-----ITL 315 (460)
T ss_pred eccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEec-CCceEEEeeeccCcee-----Eee
Confidence 9999999999998 7999999999999999999999999999999888899987 7999999999998743 566
Q ss_pred cCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhccccccee
Q 007234 244 EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIV 323 (612)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~ 323 (612)
.|+...+.+++.. |....+++++.| .|+-|++..|+.+.
T Consensus 316 t~hkksvral~lh-----P~e~~fASas~d-nik~w~~p~g~f~~----------------------------------- 354 (460)
T KOG0285|consen 316 THHKKSVRALCLH-----PKENLFASASPD-NIKQWKLPEGEFLQ----------------------------------- 354 (460)
T ss_pred ecccceeeEEecC-----CchhhhhccCCc-cceeccCCccchhh-----------------------------------
Confidence 6788888888886 888888888877 68889877665432
Q ss_pred cCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceeeec
Q 007234 324 KPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN 381 (612)
Q Consensus 324 ~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~~~ 381 (612)
.+.+|..-+.+++...||-+ ++|++.+++.+|+..+
T Consensus 355 --------------------nlsgh~~iintl~~nsD~v~--~~G~dng~~~fwdwks 390 (460)
T KOG0285|consen 355 --------------------NLSGHNAIINTLSVNSDGVL--VSGGDNGSIMFWDWKS 390 (460)
T ss_pred --------------------ccccccceeeeeeeccCceE--EEcCCceEEEEEecCc
Confidence 23355556777888888865 6899999999998754
No 48
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.6e-27 Score=246.62 Aligned_cols=259 Identities=15% Similarity=0.190 Sum_probs=188.2
Q ss_pred CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeecc---------------------------------CC
Q 007234 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADI---------------------------------AS 48 (612)
Q Consensus 2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~---------------------------------~~ 48 (612)
+.+.| +|+.||+||+|||+||.||.|+||.+...+....-.+. ..
T Consensus 266 h~gaI--w~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~ 343 (712)
T KOG0283|consen 266 HKGAI--WAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGS 343 (712)
T ss_pred cCCcE--EEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccccc
Confidence 56788 66799999999999999999999998652110000000 00
Q ss_pred cccc-------cccccc---ccccccccceeEEEeeecccccccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCC
Q 007234 49 TETT-------SLYGNR---LEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPG 118 (612)
Q Consensus 49 ~~~~-------~~~s~~---~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~ 118 (612)
...+ ..|... ...||. .++-.+.|.- +.+|++++.|.+|++|++.+.+|+..+ .|..
T Consensus 344 ~s~~~~~p~~~f~f~ekP~~ef~GHt-~DILDlSWSK----------n~fLLSSSMDKTVRLWh~~~~~CL~~F--~Hnd 410 (712)
T KOG0283|consen 344 QSPCVLLPLKAFVFSEKPFCEFKGHT-ADILDLSWSK----------NNFLLSSSMDKTVRLWHPGRKECLKVF--SHND 410 (712)
T ss_pred CCccccCCCccccccccchhhhhccc-hhheeccccc----------CCeeEeccccccEEeecCCCcceeeEE--ecCC
Confidence 0000 001100 012232 2344455643 679999999999999999999999887 4999
Q ss_pred CeEEEEEec-CCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEE
Q 007234 119 GVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKF 195 (612)
Q Consensus 119 ~V~~l~~sp-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~ 195 (612)
-|+|++|+| |.++|++|+.||.|++|++...+.+.- ..-..-|++++|.|||+..++|+ |.+++|+....+....+
T Consensus 411 fVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W-~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~ 489 (712)
T KOG0283|consen 411 FVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDW-NDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDF 489 (712)
T ss_pred eeEEEEecccCCCcEeecccccceEEeecCcCeeEee-hhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEee
Confidence 999999999 888999999999999999976655444 44457899999999999999999 99999999888776544
Q ss_pred ec--C------CCCEEEEEEeeCCc-EEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcE
Q 007234 196 SG--H------PGAVRFMTFSDNGK-YVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLY 266 (612)
Q Consensus 196 ~~--h------~~~v~~l~~sp~~~-~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (612)
.- | ...|+++.|.|... .+++++ .|..|+|+|.+..+.. +.+...+.......+.|+ .||++
T Consensus 490 ~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTS-nDSrIRI~d~~~~~lv---~KfKG~~n~~SQ~~Asfs-----~Dgk~ 560 (712)
T KOG0283|consen 490 HIRLHNKKKKQGKRITGLQFFPGDPDEVLVTS-NDSRIRIYDGRDKDLV---HKFKGFRNTSSQISASFS-----SDGKH 560 (712)
T ss_pred eEeeccCccccCceeeeeEecCCCCCeEEEec-CCCceEEEeccchhhh---hhhcccccCCcceeeeEc-----cCCCE
Confidence 21 1 12799999997544 244444 6999999999776644 334333333344456676 89999
Q ss_pred EEEEecCCcEEEEECCCcc
Q 007234 267 VLAISETGVCYIWYGQNIE 285 (612)
Q Consensus 267 l~t~s~dg~i~iwd~~~~~ 285 (612)
|+++++|..|++|+.+...
T Consensus 561 IVs~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 561 IVSASEDSWVYIWKNDSFN 579 (712)
T ss_pred EEEeecCceEEEEeCCCCc
Confidence 9999999999999975543
No 49
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=5.9e-27 Score=211.07 Aligned_cols=273 Identities=13% Similarity=0.115 Sum_probs=219.2
Q ss_pred CcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEE
Q 007234 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCM 165 (612)
Q Consensus 86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l 165 (612)
+.+|++++.|....||-...|+.+.++ .+|++.|+|+..+.+.+.+++|+.|.++++||+.+|+++.+++. ..+|..+
T Consensus 22 GDLlFscaKD~~~~vw~s~nGerlGty-~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~-~~~Vk~~ 99 (327)
T KOG0643|consen 22 GDLLFSCAKDSTPTVWYSLNGERLGTY-DGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKT-NSPVKRV 99 (327)
T ss_pred CcEEEEecCCCCceEEEecCCceeeee-cCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeec-CCeeEEE
Confidence 999999999999999999999999888 68999999999999999999999999999999999999999984 6789999
Q ss_pred EECCCCCEEEEeC-------CeEEEEEcC-------CCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCC
Q 007234 166 AVSSDGKMLATAA-------GQLKTFNCS-------DHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (612)
Q Consensus 166 ~~spdg~~l~~~~-------g~i~lwd~~-------~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~ 231 (612)
.|+++|++++... +.|.++|++ ..+++..+..+.+.++.+.|.|-+++++++. .||.|.+||+++
T Consensus 100 ~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Gh-e~G~is~~da~~ 178 (327)
T KOG0643|consen 100 DFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGH-EDGSISIYDART 178 (327)
T ss_pred eeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEec-CCCcEEEEEccc
Confidence 9999999888765 589999998 4566888888999999999999999999986 799999999999
Q ss_pred CccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccc
Q 007234 232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSAT 311 (612)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 311 (612)
+... +.....+...++-+.++ +|..+++++|.|.+-++||..+.+.+++.....+.-+.. ++|-...
T Consensus 179 g~~~----v~s~~~h~~~Ind~q~s-----~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aa--isP~~d~-- 245 (327)
T KOG0643|consen 179 GKEL----VDSDEEHSSKINDLQFS-----RDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAA--ISPLLDH-- 245 (327)
T ss_pred Ccee----eechhhhcccccccccc-----CCcceEEecccCccceeeeccceeeEEEeeeccccccee--cccccce--
Confidence 8643 33334444466677777 999999999999999999999999988766554433221 3443331
Q ss_pred hhhhcccccceecCCCceEEEE-eC--------CccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceeee
Q 007234 312 AAIFAAKLQDIVKPASVHTFVA-YG--------LLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (612)
Q Consensus 312 ~~i~~~~~d~~~~~~~~~~~~~-~g--------~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~~ 380 (612)
.|+.|+.+..... .... .| ......+..+.+|.+++.+++|+|||+.. .||+.|+.+|+.-+.
T Consensus 246 -VilgGGqeA~dVT----TT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksY-sSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 246 -VILGGGQEAMDVT----TTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSY-SSGGEDGYVRLHHFD 317 (327)
T ss_pred -EEecCCceeeeee----eecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCccc-ccCCCCceEEEEEec
Confidence 4444444321111 0000 01 01125566888999999999999999999 999999999998663
No 50
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.95 E-value=1.4e-27 Score=218.99 Aligned_cols=303 Identities=17% Similarity=0.170 Sum_probs=212.1
Q ss_pred CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (612)
Q Consensus 2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (612)
|.+++|.- +|||||.++|+|+.|..|+|.|++..-... .
T Consensus 111 HK~~cR~a--afs~DG~lvATGsaD~SIKildvermlaks--~------------------------------------- 149 (430)
T KOG0640|consen 111 HKSPCRAA--AFSPDGSLVATGSADASIKILDVERMLAKS--K------------------------------------- 149 (430)
T ss_pred cccceeee--eeCCCCcEEEccCCcceEEEeehhhhhhhc--c-------------------------------------
Confidence 45677655 999999999999999999999986211000 0
Q ss_pred cccCCcEEEEEECCCcEEEEEcCCC-eEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEec--C
Q 007234 82 RKLGSSLLVLGTGGGDVLALAVSAG-QLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA--S 158 (612)
Q Consensus 82 ~~~~~~~l~~gs~~g~I~vwd~~~~-~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~--~ 158 (612)
...+..|. .+.+ -.++++ ..|...|+++.|+|....|++++.|++|++||+......+-++. .
T Consensus 150 ----~~em~~~~---------~qa~hPvIRTl-YDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd 215 (430)
T KOG0640|consen 150 ----PKEMISGD---------TQARHPVIRTL-YDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQD 215 (430)
T ss_pred ----hhhhccCC---------cccCCceEeeh-hhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhc
Confidence 00000000 0111 223344 56999999999999999999999999999999875433332222 3
Q ss_pred CCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEE---ecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCc
Q 007234 159 TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKF---SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (612)
Q Consensus 159 ~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~---~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~ 233 (612)
..+|.++.|+|.|.+|++|. ..+++||+.+.++...- .+|.+.|+++.+++.|+..++++ .||.|++||--.++
T Consensus 216 ~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaS-kDG~IklwDGVS~r 294 (430)
T KOG0640|consen 216 TEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTAS-KDGAIKLWDGVSNR 294 (430)
T ss_pred cceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEec-cCCcEEeeccccHH
Confidence 45899999999999999998 69999999999886543 47899999999999999888887 89999999977776
Q ss_pred cccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCce----eEeecccccCCCCcc
Q 007234 234 KQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATK----ILSSSEDVNSKSQKS 309 (612)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~----~~~~~~~~~s~~~~~ 309 (612)
+. ..+...|....++...|. .+|+++++.+.|..+++|++.+++.+....+.. .......+|.-...
T Consensus 295 Cv---~t~~~AH~gsevcSa~Ft-----kn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEd- 365 (430)
T KOG0640|consen 295 CV---RTIGNAHGGSEVCSAVFT-----KNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTED- 365 (430)
T ss_pred HH---HHHHhhcCCceeeeEEEc-----cCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccc-
Confidence 44 123334777778888887 999999999999999999999998886554331 11111111111110
Q ss_pred cchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceee
Q 007234 310 ATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (612)
Q Consensus 310 ~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~ 379 (612)
+++.-... .+.+..++........---.+|.+.+..+.-||.+.-+ +++|+|...|+|..
T Consensus 366 ---yVl~pDEa------s~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~F-mTcsdD~raRFWyr 425 (430)
T KOG0640|consen 366 ---YVLFPDEA------SNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAF-MTCSDDFRARFWYR 425 (430)
T ss_pred ---eEEccccc------cCceeeccccchhhhhhcccCCCCCceEEEeCCCCCce-eeecccceeeeeee
Confidence 11111110 11222222221111222235799999999999999999 99999999999975
No 51
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.95 E-value=4.1e-28 Score=225.61 Aligned_cols=238 Identities=14% Similarity=0.250 Sum_probs=195.8
Q ss_pred CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (612)
Q Consensus 2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (612)
+++.| ||+.| |.+.+++|+.|.+|+|||+++|+++.++-+|...+..+.|+
T Consensus 236 HtGSV--LCLqy--d~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~------------------------- 286 (499)
T KOG0281|consen 236 HTGSV--LCLQY--DERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS------------------------- 286 (499)
T ss_pred CCCcE--Eeeec--cceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe-------------------------
Confidence 46677 75566 55699999999999999999999999998887776655555
Q ss_pred cccCCcEEEEEECCCcEEEEEcCCCeE--EEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCC
Q 007234 82 RKLGSSLLVLGTGGGDVLALAVSAGQL--KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST 159 (612)
Q Consensus 82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~--~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~ 159 (612)
+.++++++.|.++.|||+..... +..++.||...|+.+.|+ .++++++|.|.+|++|++.+++.++++.+|.
T Consensus 287 ----ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHk 360 (499)
T KOG0281|consen 287 ----NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHK 360 (499)
T ss_pred ----CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeehhhhccc
Confidence 56899999999999999986542 334557999999999995 5699999999999999999999999999999
Q ss_pred CCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCcccc-
Q 007234 160 KGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS- 236 (612)
Q Consensus 160 ~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~- 236 (612)
.+|.|+.+. |+++++|+ .+|++||+..|.+++.+.||+.-|.++.|. .+.+++++ .||.|++||+..+....
T Consensus 361 RGIAClQYr--~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGa-YDGkikvWdl~aaldpra 435 (499)
T KOG0281|consen 361 RGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGA-YDGKIKVWDLQAALDPRA 435 (499)
T ss_pred ccceehhcc--CeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--Cceeeecc-ccceEEEEecccccCCcc
Confidence 999999885 89999998 899999999999999999999999999995 56799988 79999999998875431
Q ss_pred ---ceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcce
Q 007234 237 ---ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE 286 (612)
Q Consensus 237 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~ 286 (612)
..|+..+..+..-+-.+.| |...+++++.|.+|.+||..++-.
T Consensus 436 ~~~~~Cl~~lv~hsgRVFrLQF-------D~fqIvsssHddtILiWdFl~~~~ 481 (499)
T KOG0281|consen 436 PASTLCLRTLVEHSGRVFRLQF-------DEFQIISSSHDDTILIWDFLNGPP 481 (499)
T ss_pred cccchHHHhhhhccceeEEEee-------cceEEEeccCCCeEEEEEcCCCCc
Confidence 1233333333322233444 347799999999999999877644
No 52
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.95 E-value=1.2e-25 Score=222.77 Aligned_cols=232 Identities=21% Similarity=0.303 Sum_probs=196.6
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEE
Q 007234 10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (612)
Q Consensus 10 ~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (612)
.+.|+|+++++++++.||.|++||+.+++....+..|...+. ++.|.+. +.++
T Consensus 56 ~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~------------------~~~~~~~---------~~~~ 108 (289)
T cd00200 56 DVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVS------------------SVAFSPD---------GRIL 108 (289)
T ss_pred EEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEE------------------EEEEcCC---------CCEE
Confidence 559999999999999999999999998888777765554444 4444432 5677
Q ss_pred EEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEEEECC
Q 007234 90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSS 169 (612)
Q Consensus 90 ~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~sp 169 (612)
++++.+|.|.+||+.+++....+ ..|...|.++.|+|++.++++++.|+.|++||+++++.+..+..+...+.++.|+|
T Consensus 109 ~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~ 187 (289)
T cd00200 109 SSSSRDKTIKVWDVETGKCLTTL-RGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSP 187 (289)
T ss_pred EEecCCCeEEEEECCCcEEEEEe-ccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECC
Confidence 88888999999999988887666 47899999999999988888888899999999999999999998888999999999
Q ss_pred CCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCc
Q 007234 170 DGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPA 247 (612)
Q Consensus 170 dg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 247 (612)
+++.+++++ |.|++||+++++.+..+..|...+.++.|+|++.++++++ .|+.+++|++.+++.. ..+..+.
T Consensus 188 ~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~i~i~~~~~~~~~-----~~~~~~~ 261 (289)
T cd00200 188 DGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGS-EDGTIRVWDLRTGECV-----QTLSGHT 261 (289)
T ss_pred CcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEc-CCCcEEEEEcCCceeE-----EEccccC
Confidence 998888877 8999999999999999888999999999999988777765 6999999999876533 3333444
Q ss_pred eeEEeEEecCCccCCCCcEEEEEecCCcEEEEE
Q 007234 248 VFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY 280 (612)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd 280 (612)
..+..+.++ +++.++++++.||.+++|+
T Consensus 262 ~~i~~~~~~-----~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 262 NSVTSLAWS-----PDGKRLASGSADGTIRIWD 289 (289)
T ss_pred CcEEEEEEC-----CCCCEEEEecCCCeEEecC
Confidence 456677776 8899999999999999996
No 53
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=1.5e-25 Score=235.09 Aligned_cols=260 Identities=15% Similarity=0.170 Sum_probs=196.5
Q ss_pred ccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccccc
Q 007234 5 NIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (612)
Q Consensus 5 ~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (612)
.|+.. .+++|+..+++++.+.....|+...+..+..+...+ ... -..++..|| ...+.++.|.+.+
T Consensus 22 ~i~~~--~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G-~~~---~~~~~l~GH-~~~V~~v~fsP~d------- 87 (493)
T PTZ00421 22 NVTPS--TALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYG-KLA---SNPPILLGQ-EGPIIDVAFNPFD------- 87 (493)
T ss_pred ccccc--cccCCCCCcEeECCceEEEEEecCCceEEeeccccc-cCC---CCCceEeCC-CCCEEEEEEcCCC-------
Confidence 45444 788898778888888888899886665433222111 000 011112344 3457788888754
Q ss_pred CCcEEEEEECCCcEEEEEcCCCe-------EEEEeccCCCCCeEEEEEecCC-CEEEEEecCCcEEEEECCCCceeEEEe
Q 007234 85 GSSLLVLGTGGGDVLALAVSAGQ-------LKWRLSDCHPGGVSAISFATHG-SCIYSAGADGMVCEIDPLTGSLLGKFR 156 (612)
Q Consensus 85 ~~~~l~~gs~~g~I~vwd~~~~~-------~~~~~~~~h~~~V~~l~~sp~~-~~l~s~s~dg~v~iwd~~~~~~~~~~~ 156 (612)
+.+|++|+.||+|++||+.++. .+..+ .+|...|.+++|+|++ ++|++|+.|++|++||+.+++.+..+.
T Consensus 88 -~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L-~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~ 165 (493)
T PTZ00421 88 -PQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHL-QGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIK 165 (493)
T ss_pred -CCEEEEEeCCCEEEEEecCCCccccccCcceEEe-cCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEc
Confidence 6789999999999999997653 23333 6899999999999975 689999999999999999999999999
Q ss_pred cCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCC-EEEEEEeeCCcEEEEEEc---CCCeEEEEEcC
Q 007234 157 ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGA-VRFMTFSDNGKYVLSSAV---GERYIALWRTD 230 (612)
Q Consensus 157 ~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~-v~~l~~sp~~~~l~s~s~---~d~~i~vwd~~ 230 (612)
.|...|.+++|+|+|.+|++++ +.|++||+++++.+..+.+|.+. +..+.|.+++..+++++. .|+.|++||++
T Consensus 166 ~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr 245 (493)
T PTZ00421 166 CHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTR 245 (493)
T ss_pred CCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCC
Confidence 9999999999999999999998 89999999999999999999875 456789998888887652 47899999998
Q ss_pred CCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEec-CCcEEEEECCCcceec
Q 007234 231 GVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-TGVCYIWYGQNIEELR 288 (612)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~-dg~i~iwd~~~~~~~~ 288 (612)
...... ..... +....+....|+ +++.+|++++. ||.|++||+.+++.+.
T Consensus 246 ~~~~p~--~~~~~-d~~~~~~~~~~d-----~d~~~L~lggkgDg~Iriwdl~~~~~~~ 296 (493)
T PTZ00421 246 KMASPY--STVDL-DQSSALFIPFFD-----EDTNLLYIGSKGEGNIRCFELMNERLTF 296 (493)
T ss_pred CCCCce--eEecc-CCCCceEEEEEc-----CCCCEEEEEEeCCCeEEEEEeeCCceEE
Confidence 764320 11111 223334445565 89999988874 9999999998887654
No 54
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.95 E-value=1.8e-26 Score=216.69 Aligned_cols=274 Identities=14% Similarity=0.186 Sum_probs=215.1
Q ss_pred cccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccc
Q 007234 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (612)
Q Consensus 4 ~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (612)
..| .|+.||.||.+||+|+-+|.|+||+..++.....+.. ....+.|..-.|+
T Consensus 107 DSV--t~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~---------------------e~~dieWl~WHp~---- 159 (399)
T KOG0296|consen 107 DSV--TCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQ---------------------EVEDIEWLKWHPR---- 159 (399)
T ss_pred Cce--EEEEEccCceEEEecCCCccEEEEEcccCceEEEeec---------------------ccCceEEEEeccc----
Confidence 345 5779999999999999999999999999998887742 1223444443333
Q ss_pred cCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCC-Ce
Q 007234 84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK-GI 162 (612)
Q Consensus 84 ~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~-~v 162 (612)
..+++.|+.||.+.+|.+..+... +++.+|..++++=.|.|+|+.++++..||+|++||+.+++++.++..... ..
T Consensus 160 --a~illAG~~DGsvWmw~ip~~~~~-kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~ 236 (399)
T KOG0296|consen 160 --AHILLAGSTDGSVWMWQIPSQALC-KVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLEL 236 (399)
T ss_pred --ccEEEeecCCCcEEEEECCCccee-eEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcC
Confidence 889999999999999999986544 45578999999999999999999999999999999999999998875433 67
Q ss_pred eEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEe--------cCCCCEEEEEEeeC---CcEEEEEEcCCCeEEEEEc
Q 007234 163 SCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS--------GHPGAVRFMTFSDN---GKYVLSSAVGERYIALWRT 229 (612)
Q Consensus 163 ~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~--------~h~~~v~~l~~sp~---~~~l~s~s~~d~~i~vwd~ 229 (612)
.++.++..+..++.|+ +.+++.+..+++.+.... .+...+.++.|.|. =++.++++ -||+|.|||+
T Consensus 237 ~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~-vdG~i~iyD~ 315 (399)
T KOG0296|consen 237 PCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGS-VDGTIAIYDL 315 (399)
T ss_pred CccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhccc-ccceEEEEec
Confidence 8899999999999888 788888888888876665 45555666666553 34555554 7999999999
Q ss_pred CCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcc
Q 007234 230 DGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKS 309 (612)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 309 (612)
...... ....|+..++.+.+. + ..+|++++.+|.|+.||.++|+.+....++...+-... .+|+.+
T Consensus 316 a~~~~R-----~~c~he~~V~~l~w~------~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~-ls~~~~- 381 (399)
T KOG0296|consen 316 AASTLR-----HICEHEDGVTKLKWL------N-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFA-LSPQKR- 381 (399)
T ss_pred ccchhh-----eeccCCCceEEEEEc------C-cchheeeccCceEEeeeccccceEEEEecCchheeEEE-EcCCCc-
Confidence 887644 345577776665544 4 68999999999999999999999877776665554333 567766
Q ss_pred cchhhhcccccceecC
Q 007234 310 ATAAIFAAKLQDIVKP 325 (612)
Q Consensus 310 ~~~~i~~~~~d~~~~~ 325 (612)
.+++++.|+..++
T Consensus 382 ---~vvT~s~D~~a~V 394 (399)
T KOG0296|consen 382 ---LVVTVSDDNTALV 394 (399)
T ss_pred ---EEEEecCCCeEEE
Confidence 7888887764443
No 55
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1e-25 Score=224.39 Aligned_cols=236 Identities=14% Similarity=0.151 Sum_probs=199.4
Q ss_pred CcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccc
Q 007234 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (612)
Q Consensus 3 s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (612)
.-|||+- .|-+--+++++|+.|..|+||+..+++.++.|..|...+.+++..|.
T Consensus 55 ~~PvRa~--kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt------------------------ 108 (794)
T KOG0276|consen 55 EVPVRAA--KFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPT------------------------ 108 (794)
T ss_pred ccchhhh--eeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCC------------------------
Confidence 3577755 89999999999999999999999999999999999998888888777
Q ss_pred ccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEec-CCCEEEEEecCCcEEEEECCCCceeEEEecCCCC
Q 007234 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG 161 (612)
Q Consensus 83 ~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~ 161 (612)
..++++++.|-.|++||.+.+-...+.+.+|+.-|.+++|+| |.+.|++||.|++|++|.+.+..+..++++|..+
T Consensus 109 ---~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekG 185 (794)
T KOG0276|consen 109 ---LPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKG 185 (794)
T ss_pred ---CCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccC
Confidence 678999999999999999987655566689999999999999 6788999999999999999999999999999999
Q ss_pred eeEEEECCCC--CEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccc
Q 007234 162 ISCMAVSSDG--KMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA 237 (612)
Q Consensus 162 v~~l~~spdg--~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~ 237 (612)
|+|+.+-+-| .+|++|+ .+|++||.++..+++++.||...|..+.|+|.-..+++|+ +||+++||+..+-+..
T Consensus 186 VN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgs-EDGTvriWhs~Ty~lE-- 262 (794)
T KOG0276|consen 186 VNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGS-EDGTVRIWNSKTYKLE-- 262 (794)
T ss_pred cceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEec-CCccEEEecCcceehh--
Confidence 9999998744 6999998 7999999999999999999999999999999999999987 8999999998876543
Q ss_pred eeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEE
Q 007234 238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYI 278 (612)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~i 278 (612)
..+.. .-..+.++... +++..++.|..+|.|.+
T Consensus 263 -~tLn~-gleRvW~I~~~------k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 263 -KTLNY-GLERVWCIAAH------KGDGKIAVGFDEGSVTV 295 (794)
T ss_pred -hhhhc-CCceEEEEeec------CCCCeEEEeccCCcEEE
Confidence 11111 22233333322 55566777776665543
No 56
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.95 E-value=2.8e-25 Score=209.58 Aligned_cols=272 Identities=15% Similarity=0.192 Sum_probs=214.9
Q ss_pred CCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEECCC
Q 007234 17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGG 96 (612)
Q Consensus 17 g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g 96 (612)
++++.+|+.||.++|||. .|+++..+.+|.+++. .+.|...++. ...+++++.|.
T Consensus 115 ~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik------------------~v~~v~~n~~------~~~fvsas~Dq 169 (423)
T KOG0313|consen 115 SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIK------------------SVAWVIKNSS------SCLFVSASMDQ 169 (423)
T ss_pred CceEEEeecCCeeEEEec-CCceEEEEecCCccee------------------eeEEEecCCc------cceEEEecCCc
Confidence 679999999999999997 5889999988877555 3445544433 45799999999
Q ss_pred cEEEEEcCCCeEEEE---eccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCC-------------------------
Q 007234 97 DVLALAVSAGQLKWR---LSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT------------------------- 148 (612)
Q Consensus 97 ~I~vwd~~~~~~~~~---~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~------------------------- 148 (612)
++++|..+.++.... ...||...|.+++..++|..+++||.|.+|++|+..+
T Consensus 170 tl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~ 249 (423)
T KOG0313|consen 170 TLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGT 249 (423)
T ss_pred eEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccc
Confidence 999999887764321 1248999999999999999999999999999999321
Q ss_pred CceeEEEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEE
Q 007234 149 GSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIAL 226 (612)
Q Consensus 149 ~~~~~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~v 226 (612)
+.++.++.+|..+|.++.|++ ...+++++ .+|+.||+.++..+.++.+ .....++..+|..++|++++ .|+.+++
T Consensus 250 r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gs-sdr~irl 326 (423)
T KOG0313|consen 250 RTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGS-SDRHIRL 326 (423)
T ss_pred cCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecC-CCCceee
Confidence 235667889999999999997 66788888 8999999999999888874 55789999999999888887 6999999
Q ss_pred EEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcc-eecccCCceeEeecccccCC
Q 007234 227 WRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE-ELRNTKATKILSSSEDVNSK 305 (612)
Q Consensus 227 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~s~ 305 (612)
||.+++... ...+.+-.+...+..+.+++ .+..+|++++.||++++||+++.+ .+.
T Consensus 327 ~DPR~~~gs--~v~~s~~gH~nwVssvkwsp----~~~~~~~S~S~D~t~klWDvRS~k~ply----------------- 383 (423)
T KOG0313|consen 327 WDPRTGDGS--VVSQSLIGHKNWVSSVKWSP----TNEFQLVSGSYDNTVKLWDVRSTKAPLY----------------- 383 (423)
T ss_pred cCCCCCCCc--eeEEeeecchhhhhheecCC----CCceEEEEEecCCeEEEEEeccCCCcce-----------------
Confidence 999988533 23445555666777777772 345678999999999999986553 211
Q ss_pred CCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceee
Q 007234 306 SQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (612)
Q Consensus 306 ~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~ 379 (612)
.+.+|...|.++.|. +|.++ +||+.|+++++..-
T Consensus 384 --------------------------------------dI~~h~DKvl~vdW~-~~~~I-vSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 384 --------------------------------------DIAGHNDKVLSVDWN-EGGLI-VSGGADNKLRIFKG 417 (423)
T ss_pred --------------------------------------eeccCCceEEEEecc-CCceE-EeccCcceEEEecc
Confidence 345566678888886 45566 89999999988753
No 57
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.7e-26 Score=238.02 Aligned_cols=236 Identities=15% Similarity=0.160 Sum_probs=203.1
Q ss_pred CcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEE
Q 007234 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCM 165 (612)
Q Consensus 86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l 165 (612)
...|+++--+|.|++||.+.+.++.++ ..|.++|.+++|+|++..|++|+.|..|++|+..+.+++.++.+|-+-|..+
T Consensus 21 rPwILtslHsG~IQlWDYRM~tli~rF-deHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~ 99 (1202)
T KOG0292|consen 21 RPWILTSLHSGVIQLWDYRMGTLIDRF-DEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTV 99 (1202)
T ss_pred CCEEEEeecCceeeeehhhhhhHHhhh-hccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEe
Confidence 678999999999999999999999888 5799999999999999999999999999999999999999999999999999
Q ss_pred EECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCcccc-------
Q 007234 166 AVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS------- 236 (612)
Q Consensus 166 ~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~------- 236 (612)
.|++.-.++++++ .+|+||+.++++++..+.||...|.|..|+|....+++++ -|.+|+|||+..-++..
T Consensus 100 ~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaS-LDQTVRVWDisGLRkk~~~pg~~e 178 (1202)
T KOG0292|consen 100 FFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSAS-LDQTVRVWDISGLRKKNKAPGSLE 178 (1202)
T ss_pred eccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEec-ccceEEEEeecchhccCCCCCCch
Confidence 9999999999999 7999999999999999999999999999999998999987 69999999986433211
Q ss_pred -----------------ceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeec
Q 007234 237 -----------------ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSS 299 (612)
Q Consensus 237 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 299 (612)
....+.++.+..-+..++|. |.-..+++|+.|..|++|.....+.
T Consensus 179 ~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfh-----pTlpliVSG~DDRqVKlWrmnetKa------------- 240 (1202)
T KOG0292|consen 179 DQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFH-----PTLPLIVSGADDRQVKLWRMNETKA------------- 240 (1202)
T ss_pred hhhhccccchhhcCCcCeeeeeeecccccccceEEec-----CCcceEEecCCcceeeEEEeccccc-------------
Confidence 11123345556666667776 7778889999999999996532211
Q ss_pred ccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceee
Q 007234 300 EDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (612)
Q Consensus 300 ~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~ 379 (612)
| ..+++.+|.+.|.++-|.|...++ +|.|.|+++|+|+.
T Consensus 241 --------------------------W--------------EvDtcrgH~nnVssvlfhp~q~lI-lSnsEDksirVwDm 279 (1202)
T KOG0292|consen 241 --------------------------W--------------EVDTCRGHYNNVSSVLFHPHQDLI-LSNSEDKSIRVWDM 279 (1202)
T ss_pred --------------------------e--------------eehhhhcccCCcceEEecCcccee-EecCCCccEEEEec
Confidence 0 022778999999999999999999 99999999999998
Q ss_pred ecc
Q 007234 380 QNR 382 (612)
Q Consensus 380 ~~~ 382 (612)
..+
T Consensus 280 ~kR 282 (1202)
T KOG0292|consen 280 TKR 282 (1202)
T ss_pred ccc
Confidence 655
No 58
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.94 E-value=1.6e-25 Score=235.19 Aligned_cols=235 Identities=18% Similarity=0.307 Sum_probs=202.5
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEE-eeccCCccccccccccccccccccceeEEEeeecccccccccCCc
Q 007234 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTE-FADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (612)
Q Consensus 9 l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (612)
+|..|. +.++++++.|.+|++||..++..+.. +.+|.+.+.++.|... +.
T Consensus 212 ~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~---------------------------~~ 262 (537)
T KOG0274|consen 212 LCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSG---------------------------GD 262 (537)
T ss_pred hhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecC---------------------------CC
Confidence 333555 56788999999999999999999888 9999998887777654 77
Q ss_pred EEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEEEE
Q 007234 88 LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAV 167 (612)
Q Consensus 88 ~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~ 167 (612)
++++|+.|.++++||..+|++...+ .+|.+.|.++... ...+++|+.|.+|++|++.++..+..+.+|..+|.++..
T Consensus 263 ~lvsgS~D~t~rvWd~~sg~C~~~l-~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~ 339 (537)
T KOG0274|consen 263 KLVSGSTDKTERVWDCSTGECTHSL-QGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQL 339 (537)
T ss_pred EEEEEecCCcEEeEecCCCcEEEEe-cCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEe
Confidence 8999999999999999999999777 5899999999875 446888999999999999999999999999999999999
Q ss_pred CCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecC
Q 007234 168 SSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEH 245 (612)
Q Consensus 168 spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~ 245 (612)
+ +.++++|+ ++|++||+.+++++..+.||...|.++.+.+. ..+++++ .|++|++||+++.. .|+.++.+
T Consensus 340 ~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs-~D~~IkvWdl~~~~----~c~~tl~~ 411 (537)
T KOG0274|consen 340 D--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGS-LDTTIKVWDLRTKR----KCIHTLQG 411 (537)
T ss_pred c--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeee-eccceEeecCCchh----hhhhhhcC
Confidence 8 78888888 99999999999999999999999999988765 7888887 79999999999983 15566776
Q ss_pred CceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceeccc
Q 007234 246 PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT 290 (612)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~ 290 (612)
+...+.... ..+++|++++.||+|++||..+++.++..
T Consensus 412 h~~~v~~l~-------~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~ 449 (537)
T KOG0274|consen 412 HTSLVSSLL-------LRDNFLVSSSADGTIKLWDAEEGECLRTL 449 (537)
T ss_pred Ccccccccc-------cccceeEeccccccEEEeecccCceeeee
Confidence 666654443 34689999999999999999888876533
No 59
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.94 E-value=1.9e-25 Score=213.92 Aligned_cols=275 Identities=18% Similarity=0.260 Sum_probs=222.6
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEE
Q 007234 12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL 91 (612)
Q Consensus 12 ~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~ 91 (612)
...|....+++|+.|..+.++|..+++.+..|+||.-.+....|+++ ...+++
T Consensus 226 d~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~---------------------------~~~v~~ 278 (506)
T KOG0289|consen 226 DIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKD---------------------------LDTVIT 278 (506)
T ss_pred eecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccc---------------------------hhheee
Confidence 55666678999999999999999999999999998887777777766 677899
Q ss_pred EECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecC--CCCeeEEEECC
Q 007234 92 GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS--TKGISCMAVSS 169 (612)
Q Consensus 92 gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~--~~~v~~l~~sp 169 (612)
++.|-.|+||........ .....|..+|+.+..+|.|.||++++.||+..+.|++++.++...... .-.+++.+|+|
T Consensus 279 aSad~~i~vws~~~~s~~-~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp 357 (506)
T KOG0289|consen 279 ASADEIIRVWSVPLSSEP-TSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP 357 (506)
T ss_pred cCCcceEEeeccccccCc-cccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcC
Confidence 999999999999877765 334679999999999999999999999999999999999988876653 23689999999
Q ss_pred CCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCc
Q 007234 170 DGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPA 247 (612)
Q Consensus 170 dg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 247 (612)
||.++.+|. |.+++||++++..+..|++|.++|..++|+.+|.||++++ +|+.|++||+++.+.. ..+.+....
T Consensus 358 DgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~a-dd~~V~lwDLRKl~n~---kt~~l~~~~ 433 (506)
T KOG0289|consen 358 DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAA-DDGSVKLWDLRKLKNF---KTIQLDEKK 433 (506)
T ss_pred CceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEe-cCCeEEEEEehhhccc---ceeeccccc
Confidence 999999998 9999999999999999999999999999999999999998 7999999999987643 233333322
Q ss_pred eeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhcccccceecCCC
Q 007234 248 VFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPAS 327 (612)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~ 327 (612)
.+..+.|. +.|.+|+.++.|=+|++++-.+.+ +.
T Consensus 434 -~v~s~~fD-----~SGt~L~~~g~~l~Vy~~~k~~k~-----------W~----------------------------- 467 (506)
T KOG0289|consen 434 -EVNSLSFD-----QSGTYLGIAGSDLQVYICKKKTKS-----------WT----------------------------- 467 (506)
T ss_pred -cceeEEEc-----CCCCeEEeecceeEEEEEeccccc-----------ce-----------------------------
Confidence 45667786 899999999777666665421110 00
Q ss_pred ceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeeccee
Q 007234 328 VHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY 378 (612)
Q Consensus 328 ~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~ 378 (612)
....+..|.+....+.|..+.+++ +++|.|...++..
T Consensus 468 -------------~~~~~~~~sg~st~v~Fg~~aq~l-~s~smd~~l~~~a 504 (506)
T KOG0289|consen 468 -------------EIKELADHSGLSTGVRFGEHAQYL-ASTSMDAILRLYA 504 (506)
T ss_pred -------------eeehhhhcccccceeeecccceEE-eeccchhheEEee
Confidence 011223345556677788888888 9999888877654
No 60
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=5.3e-26 Score=201.25 Aligned_cols=245 Identities=17% Similarity=0.195 Sum_probs=201.2
Q ss_pred EeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCC
Q 007234 111 RLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSD 188 (612)
Q Consensus 111 ~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~ 188 (612)
..+.+|.++|.++.|+-+|++.++|+.|.+|++|+...|.+++++.+|...|..++.+.|+..+++++ ..+.+||+.+
T Consensus 11 ~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~T 90 (307)
T KOG0316|consen 11 SILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNT 90 (307)
T ss_pred eeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEccc
Confidence 34478999999999999999999999999999999999999999999999999999999999999888 6899999999
Q ss_pred CeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEE
Q 007234 189 HKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVL 268 (612)
Q Consensus 189 ~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 268 (612)
|+.+++|.+|.+.|+.+.|+.+...+++++ -|..+++||.+..... +++.+......+..+.. .++.++
T Consensus 91 Gkv~Rr~rgH~aqVNtV~fNeesSVv~Sgs-fD~s~r~wDCRS~s~e---PiQildea~D~V~Si~v-------~~heIv 159 (307)
T KOG0316|consen 91 GKVDRRFRGHLAQVNTVRFNEESSVVASGS-FDSSVRLWDCRSRSFE---PIQILDEAKDGVSSIDV-------AEHEIV 159 (307)
T ss_pred CeeeeecccccceeeEEEecCcceEEEecc-ccceeEEEEcccCCCC---ccchhhhhcCceeEEEe-------cccEEE
Confidence 999999999999999999999999999887 6999999999887644 55555554444455544 357899
Q ss_pred EEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeecc
Q 007234 269 AISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVN 348 (612)
Q Consensus 269 t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h 348 (612)
+|+.||+++.||++.|+.....-...+...+ |+++++ ..++++.++++++.| .......+...+|
T Consensus 160 aGS~DGtvRtydiR~G~l~sDy~g~pit~vs---~s~d~n----c~La~~l~stlrLlD--------k~tGklL~sYkGh 224 (307)
T KOG0316|consen 160 AGSVDGTVRTYDIRKGTLSSDYFGHPITSVS---FSKDGN----CSLASSLDSTLRLLD--------KETGKLLKSYKGH 224 (307)
T ss_pred eeccCCcEEEEEeecceeehhhcCCcceeEE---ecCCCC----EEEEeeccceeeecc--------cchhHHHHHhccc
Confidence 9999999999999999887544444333332 788888 888899988777766 2233333455677
Q ss_pred CCC--eEEEEecCCCceEeccccceeeecceeeecc
Q 007234 349 SGE--DINLNCSQDGVLLPMSQSLLKSKRGRYVQNR 382 (612)
Q Consensus 349 ~~~--v~~l~~S~dg~~l~~s~s~d~~~~~w~~~~~ 382 (612)
.+. -..++++..-..+ ++||+|+.+.+|++.+.
T Consensus 225 kn~eykldc~l~qsdthV-~sgSEDG~Vy~wdLvd~ 259 (307)
T KOG0316|consen 225 KNMEYKLDCCLNQSDTHV-FSGSEDGKVYFWDLVDE 259 (307)
T ss_pred ccceeeeeeeecccceeE-EeccCCceEEEEEeccc
Confidence 654 4556677777777 99999999999998654
No 61
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.5e-25 Score=226.69 Aligned_cols=273 Identities=16% Similarity=0.230 Sum_probs=219.6
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEE
Q 007234 11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV 90 (612)
Q Consensus 11 ~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~ 90 (612)
+.||. .+.||.|. ...|.+|+..++........+ ...++++.|.+. +.+|+
T Consensus 183 ldWss-~n~laVal-g~~vylW~~~s~~v~~l~~~~------------------~~~vtSv~ws~~---------G~~La 233 (484)
T KOG0305|consen 183 LDWSS-ANVLAVAL-GQSVYLWSASSGSVTELCSFG------------------EELVTSVKWSPD---------GSHLA 233 (484)
T ss_pred hhccc-CCeEEEEe-cceEEEEecCCCceEEeEecC------------------CCceEEEEECCC---------CCEEE
Confidence 37774 45677765 347999999999876655432 335566666655 89999
Q ss_pred EEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEE-EecCCCCeeEEEECC
Q 007234 91 LGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK-FRASTKGISCMAVSS 169 (612)
Q Consensus 91 ~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~-~~~~~~~v~~l~~sp 169 (612)
+|..+|.|.|||..+.+.+..+...|...|-+++|+ +..+.+|+.|+.|..+|++..+.... +.+|...|..++|++
T Consensus 234 vG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~ 311 (484)
T KOG0305|consen 234 VGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSP 311 (484)
T ss_pred EeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECC
Confidence 999999999999999988877754599999999997 56799999999999999998876655 888999999999999
Q ss_pred CCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCC-cEEEEEE-cCCCeEEEEEcCCCccccceeeEeecC
Q 007234 170 DGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNG-KYVLSSA-VGERYIALWRTDGVKKQSASCVLAMEH 245 (612)
Q Consensus 170 dg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~-~~l~s~s-~~d~~i~vwd~~~~~~~~~~~~~~~~~ 245 (612)
|++++|+|+ +.+.|||.....+...+..|.+.|..++|+|-. ..|++|+ ..|+.|++||..++... .....
T Consensus 312 d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i-----~~vdt 386 (484)
T KOG0305|consen 312 DGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARI-----DSVDT 386 (484)
T ss_pred CCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEe-----ccccc
Confidence 999999999 899999998888999999999999999999954 4566643 45899999999988744 33434
Q ss_pred CceeEEeEEecCCccCCCCcEEEEE-e-cCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhccccccee
Q 007234 246 PAVFMDCRCIDNGGVDDAGLYVLAI-S-ETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIV 323 (612)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~l~t~-s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~ 323 (612)
...+ +.+.|+ +..+.|+++ + .++.|.||+..+.+.+
T Consensus 387 gsQV-csL~Ws-----k~~kEi~sthG~s~n~i~lw~~ps~~~~------------------------------------ 424 (484)
T KOG0305|consen 387 GSQV-CSLIWS-----KKYKELLSTHGYSENQITLWKYPSMKLV------------------------------------ 424 (484)
T ss_pred CCce-eeEEEc-----CCCCEEEEecCCCCCcEEEEecccccee------------------------------------
Confidence 4444 555565 666555555 3 3778999987663321
Q ss_pred cCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceeeec
Q 007234 324 KPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN 381 (612)
Q Consensus 324 ~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~~~ 381 (612)
..+.+|...|..+++||||..+ ++|+.|.++++|++.+
T Consensus 425 -------------------~~l~gH~~RVl~la~SPdg~~i-~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 425 -------------------AELLGHTSRVLYLALSPDGETI-VTGAADETLRFWNLFD 462 (484)
T ss_pred -------------------eeecCCcceeEEEEECCCCCEE-EEecccCcEEeccccC
Confidence 1567899999999999999999 9999999999999854
No 62
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=3.5e-25 Score=199.09 Aligned_cols=246 Identities=14% Similarity=0.255 Sum_probs=203.9
Q ss_pred CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEe--eccCCccccccccccccccccccceeEEEeeecccc
Q 007234 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEF--ADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK 79 (612)
Q Consensus 2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~--~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~ 79 (612)
+.++|.++ +|+-+|..||+|+.|++++||++..++..... .+|.+. ...++|.+.+
T Consensus 19 ~~~~v~Sv--~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~s------------------vdql~w~~~~-- 76 (313)
T KOG1407|consen 19 HVQKVHSV--AWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDS------------------VDQLCWDPKH-- 76 (313)
T ss_pred hhhcceEE--EEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcc------------------hhhheeCCCC--
Confidence 45678777 99999999999999999999999877655433 333332 3345666665
Q ss_pred cccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCC
Q 007234 80 KKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST 159 (612)
Q Consensus 80 ~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~ 159 (612)
..++++++.|.+|++||++++++..++. ..+.=.-+.|+|+|.+++.++.|..|...|.++.+.....+ ..
T Consensus 77 ------~d~~atas~dk~ir~wd~r~~k~~~~i~--~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~ 147 (313)
T KOG1407|consen 77 ------PDLFATASGDKTIRIWDIRSGKCTARIE--TKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FK 147 (313)
T ss_pred ------CcceEEecCCceEEEEEeccCcEEEEee--ccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhc-cc
Confidence 6789999999999999999999987774 33444567899999999999999999999999888777655 34
Q ss_pred CCeeEEEECCCCCEEEEe-C-CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccc
Q 007234 160 KGISCMAVSSDGKMLATA-A-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA 237 (612)
Q Consensus 160 ~~v~~l~~spdg~~l~~~-~-g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~ 237 (612)
..+.-++|+.++.+++.. + |.|.|.....-+++..+..|+....||.|+|+|++|++++ .|-.+.+||++.--
T Consensus 148 ~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~Gs-ADAlvSLWD~~ELi---- 222 (313)
T KOG1407|consen 148 FEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGS-ADALVSLWDVDELI---- 222 (313)
T ss_pred ceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeecc-ccceeeccChhHhh----
Confidence 467788888777766544 4 9999999999999999999999999999999999999998 69999999997754
Q ss_pred eeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecc
Q 007234 238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRN 289 (612)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~ 289 (612)
|...+......+..+.|+ .||++|+++|+|..|-|=++++|..+..
T Consensus 223 -C~R~isRldwpVRTlSFS-----~dg~~lASaSEDh~IDIA~vetGd~~~e 268 (313)
T KOG1407|consen 223 -CERCISRLDWPVRTLSFS-----HDGRMLASASEDHFIDIAEVETGDRVWE 268 (313)
T ss_pred -hheeeccccCceEEEEec-----cCcceeeccCccceEEeEecccCCeEEE
Confidence 556667778888899998 9999999999999999988888877653
No 63
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.94 E-value=8.3e-27 Score=226.33 Aligned_cols=240 Identities=21% Similarity=0.277 Sum_probs=192.2
Q ss_pred eeEEEeeecccccccccCCcEEEEEECCCcEEEEEcCC-CeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEEC
Q 007234 68 YTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSA-GQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDP 146 (612)
Q Consensus 68 ~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~-~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~ 146 (612)
++++.|++.. +.++++|+.|+.|+||++-. +.+++++ .+|..+|.+++|+++|..|+++|.|+.|++||+
T Consensus 217 vsai~~fp~~--------~hLlLS~gmD~~vklW~vy~~~~~lrtf-~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDt 287 (503)
T KOG0282|consen 217 VSAIQWFPKK--------GHLLLSGGMDGLVKLWNVYDDRRCLRTF-KGHRKPVRDASFNNCGTSFLSASFDRFLKLWDT 287 (503)
T ss_pred cchhhhccce--------eeEEEecCCCceEEEEEEecCcceehhh-hcchhhhhhhhccccCCeeeeeecceeeeeecc
Confidence 3455555543 78999999999999999987 7777666 689999999999999999999999999999999
Q ss_pred CCCceeEEEecCCCCeeEEEECCCC-CEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCe
Q 007234 147 LTGSLLGKFRASTKGISCMAVSSDG-KMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERY 223 (612)
Q Consensus 147 ~~~~~~~~~~~~~~~v~~l~~spdg-~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~ 223 (612)
++|+++..|.. ...++|+.|+||+ +.+++|+ +.|+.||+++++.++++..|-+.|..+.|-++|+++++++ +|++
T Consensus 288 ETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissS-Ddks 365 (503)
T KOG0282|consen 288 ETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSS-DDKS 365 (503)
T ss_pred ccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeec-cCcc
Confidence 99999999984 4578999999998 6666776 8999999999999999999999999999999999999997 7999
Q ss_pred EEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeeccccc
Q 007234 224 IALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVN 303 (612)
Q Consensus 224 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 303 (612)
++||+.+.+-... +........+-++... |++.++++-+.|+.|.+|.+...-.+.
T Consensus 366 ~riWe~~~~v~ik----~i~~~~~hsmP~~~~~-----P~~~~~~aQs~dN~i~ifs~~~~~r~n--------------- 421 (503)
T KOG0282|consen 366 VRIWENRIPVPIK----NIADPEMHTMPCLTLH-----PNGKWFAAQSMDNYIAIFSTVPPFRLN--------------- 421 (503)
T ss_pred EEEEEcCCCccch----hhcchhhccCcceecC-----CCCCeehhhccCceEEEEecccccccC---------------
Confidence 9999998875441 1112222222334444 999999999999999999753321110
Q ss_pred CCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccC--CCeEEEEecCCCceEeccccceeeecceeee
Q 007234 304 SKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNS--GEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (612)
Q Consensus 304 s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~--~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~~ 380 (612)
.+ +.+.+|. +.-..+.|||||.+| +||+.||.+.+|+..
T Consensus 422 ---kk----------------------------------K~feGh~vaGys~~v~fSpDG~~l-~SGdsdG~v~~wdwk 462 (503)
T KOG0282|consen 422 ---KK----------------------------------KRFEGHSVAGYSCQVDFSPDGRTL-CSGDSDGKVNFWDWK 462 (503)
T ss_pred ---Hh----------------------------------hhhcceeccCceeeEEEcCCCCeE-EeecCCccEEEeech
Confidence 00 0122332 235678899999999 999999999999873
No 64
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.94 E-value=2.7e-25 Score=203.74 Aligned_cols=237 Identities=14% Similarity=0.221 Sum_probs=202.7
Q ss_pred CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (612)
Q Consensus 2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (612)
++++|..+ .|.+|++.++++|.|.+|+.||.++|+++..+++|..-++.+. +.
T Consensus 89 HsgAVM~l--~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~--p~----------------------- 141 (338)
T KOG0265|consen 89 HSGAVMEL--HGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLD--PS----------------------- 141 (338)
T ss_pred ccceeEee--eeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecC--cc-----------------------
Confidence 57889666 9999999999999999999999999999999988876555332 11
Q ss_pred cccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCC
Q 007234 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG 161 (612)
Q Consensus 82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~ 161 (612)
+.+..++.+|+.||++++||+++...++.+. ..-.++++.|..++..+++|+-|+.|++||++.+....++.+|.+.
T Consensus 142 -rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~--~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~Dt 218 (338)
T KOG0265|consen 142 -RRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE--NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADT 218 (338)
T ss_pred -ccCCeEEEecCCCceEEEEeecccchhhccc--cceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCc
Confidence 1126788899999999999999988876653 4567999999999999999999999999999999999999999999
Q ss_pred eeEEEECCCCCEEEEeC--CeEEEEEcCCC----eeEEEEecCCC----CEEEEEEeeCCcEEEEEEcCCCeEEEEEcCC
Q 007234 162 ISCMAVSSDGKMLATAA--GQLKTFNCSDH----KKMQKFSGHPG----AVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (612)
Q Consensus 162 v~~l~~spdg~~l~~~~--g~i~lwd~~~~----~~~~~~~~h~~----~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~ 231 (612)
|+.+..+|+|.++.+-+ .++++||++.. +++..+.||.. ....++|+|+++.+-+++ .|+.+++||...
T Consensus 219 It~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags-~dr~vyvwd~~~ 297 (338)
T KOG0265|consen 219 ITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGS-ADRFVYVWDTTS 297 (338)
T ss_pred eeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCcccccc-ccceEEEeeccc
Confidence 99999999999999888 89999999753 45778877653 245679999999887776 699999999877
Q ss_pred CccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEE
Q 007234 232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIW 279 (612)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iw 279 (612)
.. .++.++.+...+..+.|. |...++.+++.|++|++=
T Consensus 298 r~-----~lyklpGh~gsvn~~~Fh-----p~e~iils~~sdk~i~lg 335 (338)
T KOG0265|consen 298 RR-----ILYKLPGHYGSVNEVDFH-----PTEPIILSCSSDKTIYLG 335 (338)
T ss_pred cc-----EEEEcCCcceeEEEeeec-----CCCcEEEEeccCceeEee
Confidence 55 567788888888888897 899999999999999864
No 65
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.94 E-value=9.8e-25 Score=247.07 Aligned_cols=241 Identities=18% Similarity=0.264 Sum_probs=195.9
Q ss_pred cccceeEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccc
Q 007234 4 SNIRDILTSFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (612)
Q Consensus 4 ~~V~~l~~~fsp-dg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (612)
++|..+ +|+| ++.+||+++.||+|+|||+.+++.+..+.+|...+.++.|++ .+
T Consensus 533 ~~v~~l--~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p------------------~~----- 587 (793)
T PLN00181 533 SKLSGI--CWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSS------------------AD----- 587 (793)
T ss_pred CceeeE--EeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcC------------------CC-----
Confidence 345444 8987 478999999999999999999999998887776666555543 22
Q ss_pred ccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEe-cCCCEEEEEecCCcEEEEECCCCc-eeEEEecCCC
Q 007234 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFA-THGSCIYSAGADGMVCEIDPLTGS-LLGKFRASTK 160 (612)
Q Consensus 83 ~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~s-p~~~~l~s~s~dg~v~iwd~~~~~-~~~~~~~~~~ 160 (612)
+.+|++|+.||.|++||+.++..+..+. +...|.++.|+ ++|..|++|+.||.|++||++.++ .+..+.+|..
T Consensus 588 ---~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~--~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~ 662 (793)
T PLN00181 588 ---PTLLASGSDDGSVKLWSINQGVSIGTIK--TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSK 662 (793)
T ss_pred ---CCEEEEEcCCCEEEEEECCCCcEEEEEe--cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCC
Confidence 6789999999999999999998887663 34689999995 478999999999999999998765 5677888999
Q ss_pred CeeEEEECCCCCEEEEeC--CeEEEEEcCCC------eeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCC
Q 007234 161 GISCMAVSSDGKMLATAA--GQLKTFNCSDH------KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (612)
Q Consensus 161 ~v~~l~~spdg~~l~~~~--g~i~lwd~~~~------~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~ 232 (612)
.|.++.|. ++.++++++ ++|++||+..+ +++..+.+|...+..+.|+|++.++++++ .|+.|++|+....
T Consensus 663 ~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs-~D~~v~iw~~~~~ 740 (793)
T PLN00181 663 TVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGS-ETNEVFVYHKAFP 740 (793)
T ss_pred CEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEe-CCCEEEEEECCCC
Confidence 99999997 677888877 89999999743 56888999999999999999999999987 7999999998655
Q ss_pred ccccce--------eeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEEC
Q 007234 233 KKQSAS--------CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (612)
Q Consensus 233 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~ 281 (612)
...... .-....+....+..++|+ +++..|++++.||.|++|++
T Consensus 741 ~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws-----~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 741 MPVLSYKFKTIDPVSGLEVDDASQFISSVCWR-----GQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred CceEEEecccCCcccccccCCCCcEEEEEEEc-----CCCCeEEEecCCCcEEEEec
Confidence 322000 000112334567788887 99999999999999999985
No 66
>PTZ00420 coronin; Provisional
Probab=99.94 E-value=2.1e-24 Score=227.48 Aligned_cols=229 Identities=14% Similarity=0.176 Sum_probs=174.9
Q ss_pred EeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEECCCcEEEEE
Q 007234 23 CSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALA 102 (612)
Q Consensus 23 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd 102 (612)
|+.++.|++|+......+..+.+|.+.|.+ +.|.+.+ +.+|++|+.||.|+|||
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~------------------lafsP~~--------~~lLASgS~DgtIrIWD 103 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILD------------------LQFNPCF--------SEILASGSEDLTIRVWE 103 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEE------------------EEEcCCC--------CCEEEEEeCCCeEEEEE
Confidence 455788999998877777778777665554 4444432 57899999999999999
Q ss_pred cCCCeE-E------EEeccCCCCCeEEEEEecCCCE-EEEEecCCcEEEEECCCCceeEEEecCCCCeeEEEECCCCCEE
Q 007234 103 VSAGQL-K------WRLSDCHPGGVSAISFATHGSC-IYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKML 174 (612)
Q Consensus 103 ~~~~~~-~------~~~~~~h~~~V~~l~~sp~~~~-l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l 174 (612)
+.++.. . .....+|...|.+++|+|++.. +++++.|++|++||+++++.+..+. +...|.+++|+|+|.+|
T Consensus 104 i~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lL 182 (568)
T PTZ00420 104 IPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLL 182 (568)
T ss_pred CCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEE
Confidence 986431 1 1123679999999999998876 5789999999999999998877776 56789999999999999
Q ss_pred EEeC--CeEEEEEcCCCeeEEEEecCCCCEEEE-----EEeeCCcEEEEEEcCC---CeEEEEEcCCCccccceeeEeec
Q 007234 175 ATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFM-----TFSDNGKYVLSSAVGE---RYIALWRTDGVKKQSASCVLAME 244 (612)
Q Consensus 175 ~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l-----~~sp~~~~l~s~s~~d---~~i~vwd~~~~~~~~~~~~~~~~ 244 (612)
++++ +.|++||+++++.+.++.+|.+.+... .|++++.+++++|..+ +.|++||++..... .....+.
T Consensus 183 at~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~p--l~~~~ld 260 (568)
T PTZ00420 183 SGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSA--LVTMSID 260 (568)
T ss_pred EEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCc--eEEEEec
Confidence 9887 899999999999999999999875443 3458889999988432 47999999864322 1222333
Q ss_pred CCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcc
Q 007234 245 HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE 285 (612)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~ 285 (612)
.....+...... ++|.++++|+.|+.|++|++..+.
T Consensus 261 ~~~~~L~p~~D~-----~tg~l~lsGkGD~tIr~~e~~~~~ 296 (568)
T PTZ00420 261 NASAPLIPHYDE-----STGLIYLIGKGDGNCRYYQHSLGS 296 (568)
T ss_pred CCccceEEeeeC-----CCCCEEEEEECCCeEEEEEccCCc
Confidence 333333333333 678999999999999999987664
No 67
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=2.2e-25 Score=199.66 Aligned_cols=281 Identities=13% Similarity=0.160 Sum_probs=214.2
Q ss_pred EEEEcCC-CCEEEEE-------eCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234 10 LTSFSPA-LDYFAIC-------SGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (612)
Q Consensus 10 ~~~fspd-g~~las~-------s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (612)
++.|||- .++||.+ ...|++.|.++..++-+.++.... .....-.++|....
T Consensus 13 svqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d----------------~~D~LfdV~Wse~~---- 72 (311)
T KOG0277|consen 13 SVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYD----------------TEDGLFDVAWSENH---- 72 (311)
T ss_pred eeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeee----------------cccceeEeeecCCC----
Confidence 5599992 2344433 136899999987555454443110 12234567787765
Q ss_pred cccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEec-CCCEEEEEecCCcEEEEECCCCceeEEEecCCC
Q 007234 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK 160 (612)
Q Consensus 82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~ 160 (612)
.+.+++++.||.+++||.......-...+.|...|.++.|++ +++.++++|.|++|++|+...++.+++|.+|..
T Consensus 73 ----e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~ 148 (311)
T KOG0277|consen 73 ----ENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNS 148 (311)
T ss_pred ----cceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCcc
Confidence 678999999999999997654433344477999999999998 556688889999999999999999999999999
Q ss_pred CeeEEEECC-CCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCc-EEEEEEcCCCeEEEEEcCCCcccc
Q 007234 161 GISCMAVSS-DGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGK-YVLSSAVGERYIALWRTDGVKKQS 236 (612)
Q Consensus 161 ~v~~l~~sp-dg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~-~l~s~s~~d~~i~vwd~~~~~~~~ 236 (612)
.|...+|+| .++.+++++ +.+++||++..-....+..|...+.++.|+.-.. .+++++ -|+.|+.||++.-+.
T Consensus 149 ~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~-vd~~vr~wDir~~r~-- 225 (311)
T KOG0277|consen 149 CIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGG-VDNLVRGWDIRNLRT-- 225 (311)
T ss_pred EEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecC-CCceEEEEehhhccc--
Confidence 999999999 567788777 8999999987554455899999999999997554 555555 799999999998764
Q ss_pred ceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhc
Q 007234 237 ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFA 316 (612)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~ 316 (612)
+++.+..+...+..+.|++ .....|++++.|=+++|||.......
T Consensus 226 --pl~eL~gh~~AVRkvk~Sp----h~~~lLaSasYDmT~riw~~~~~ds~----------------------------- 270 (311)
T KOG0277|consen 226 --PLFELNGHGLAVRKVKFSP----HHASLLASASYDMTVRIWDPERQDSA----------------------------- 270 (311)
T ss_pred --cceeecCCceEEEEEecCc----chhhHhhhccccceEEecccccchhh-----------------------------
Confidence 3677788888899999983 23467899999999999986533221
Q ss_pred ccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecC-CCceEeccccceeeeccee
Q 007234 317 AKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQ-DGVLLPMSQSLLKSKRGRY 378 (612)
Q Consensus 317 ~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~-dg~~l~~s~s~d~~~~~w~ 378 (612)
.++..-|+++|..+.||+ ++.++ ++.+-|..+.+|+
T Consensus 271 -------------------------~e~~~~HtEFv~g~Dws~~~~~~v-As~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 271 -------------------------IETVDHHTEFVCGLDWSLFDPGQV-ASTGWDELLYVWN 307 (311)
T ss_pred -------------------------hhhhhccceEEeccccccccCcee-eecccccceeeec
Confidence 113345777788888886 45566 9999999999996
No 68
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1e-24 Score=197.19 Aligned_cols=240 Identities=14% Similarity=0.192 Sum_probs=193.5
Q ss_pred CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCC--cEEEEeeccCCccccccccccccccccccceeEEEeeecccc
Q 007234 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKG--QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK 79 (612)
Q Consensus 2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~ 79 (612)
+...||++ +|+|.|++||++|.|.++.||.-..+ +++..+.+|...|.+++|+.+
T Consensus 60 hkrsVRsv--Awsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~s--------------------- 116 (312)
T KOG0645|consen 60 HKRSVRSV--AWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSAS--------------------- 116 (312)
T ss_pred chheeeee--eecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCC---------------------
Confidence 45789888 99999999999999999999976644 578889999988887777777
Q ss_pred cccccCCcEEEEEECCCcEEEEEcCCCeE--EEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECC---CCceeEE
Q 007234 80 KKRKLGSSLLVLGTGGGDVLALAVSAGQL--KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL---TGSLLGK 154 (612)
Q Consensus 80 ~~~~~~~~~l~~gs~~g~I~vwd~~~~~~--~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~---~~~~~~~ 154 (612)
+.+||+++.|..|.||.+..+.. ...+++.|+..|-.+.|+|...+|+++|.|++|++|+-. ..++.++
T Consensus 117 ------G~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~t 190 (312)
T KOG0645|consen 117 ------GNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQT 190 (312)
T ss_pred ------CCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEE
Confidence 99999999999999999986543 234557899999999999999999999999999999765 3478999
Q ss_pred EecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCC
Q 007234 155 FRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (612)
Q Consensus 155 ~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~ 232 (612)
+.+|...|.+++|+|.|..|++++ ++++||-..+.- -.-|..+++.+.|. +| .+++++ +|+.|++|.-...
T Consensus 191 l~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~----~~~~sr~~Y~v~W~-~~-~IaS~g-gD~~i~lf~~s~~ 263 (312)
T KOG0645|consen 191 LDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL----SGMHSRALYDVPWD-NG-VIASGG-GDDAIRLFKESDS 263 (312)
T ss_pred ecCccceEEEEEecCCCceEEEecCCcceEeeeeccCc----chhcccceEeeeec-cc-ceEecc-CCCEEEEEEecCC
Confidence 999999999999999999999998 899999865321 12377889999998 44 688887 7999999986643
Q ss_pred cc-ccceeeE-eecCCceeEEeEEecCCccCC-CCcEEEEEecCCcEEEEECC
Q 007234 233 KK-QSASCVL-AMEHPAVFMDCRCIDNGGVDD-AGLYVLAISETGVCYIWYGQ 282 (612)
Q Consensus 233 ~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~l~t~s~dg~i~iwd~~ 282 (612)
-. .....+. ....+...+.++.+. | .+.+|++++.||.|++|.+.
T Consensus 264 ~d~p~~~l~~~~~~aHe~dVNsV~w~-----p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 264 PDEPSWNLLAKKEGAHEVDVNSVQWN-----PKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred CCCchHHHHHhhhcccccccceEEEc-----CCCCCceeecCCCceEEEEEec
Confidence 11 1111111 112344577788887 6 37899999999999999864
No 69
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.94 E-value=4.3e-26 Score=217.11 Aligned_cols=279 Identities=17% Similarity=0.158 Sum_probs=221.3
Q ss_pred CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCc--EEEEeeccCCccccccccccccccccccceeEEEeeecccc
Q 007234 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ--VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK 79 (612)
Q Consensus 2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~ 79 (612)
+.+.|..+ .|=++...|++|+.|..|++|++..++ .+.++.+..+++..+.|.++
T Consensus 174 h~gev~~v--~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~--------------------- 230 (459)
T KOG0288|consen 174 HEGEVHDV--EFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSD--------------------- 230 (459)
T ss_pred ccccccee--EEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCC---------------------
Confidence 34567666 899998899999999999999998776 55666665555655555555
Q ss_pred cccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCC
Q 007234 80 KKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST 159 (612)
Q Consensus 80 ~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~ 159 (612)
+..++.++.|+.+++|++...+...++ .+|++.|+++.|......+++|+.|.+|+.||+....+.+++-. .
T Consensus 231 ------~~~~iAas~d~~~r~Wnvd~~r~~~TL-sGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~-~ 302 (459)
T KOG0288|consen 231 ------NKHVIAASNDKNLRLWNVDSLRLRHTL-SGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLP-G 302 (459)
T ss_pred ------CceEEeecCCCceeeeeccchhhhhhh-cccccceeeehhhccccceeeccccchhhhhhhhhhheeccccc-c
Confidence 788999999999999999999988777 57999999999988776799999999999999999888877553 3
Q ss_pred CCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccc
Q 007234 160 KGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA 237 (612)
Q Consensus 160 ~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~ 237 (612)
..+..|+.+ +..+++|. ++|++||.++..+....+.+. .|+++..+++|..+++++ .|.++.+.|+++....
T Consensus 303 S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsss-RDdtl~viDlRt~eI~-- 376 (459)
T KOG0288|consen 303 SQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSS-RDDTLKVIDLRTKEIR-- 376 (459)
T ss_pred ccccceEec--ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeec-CCCceeeeecccccEE--
Confidence 455666665 44566666 799999999999999998776 899999999999999986 7999999999987643
Q ss_pred eeeEeec--CCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhh
Q 007234 238 SCVLAME--HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIF 315 (612)
Q Consensus 238 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~ 315 (612)
..+... .....++-+.|+ |++.|+++||.||.|+||++.+++.-...+..
T Consensus 377 -~~~sA~g~k~asDwtrvvfS-----pd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s---------------------- 428 (459)
T KOG0288|consen 377 -QTFSAEGFKCASDWTRVVFS-----PDGSYVAAGSADGSVYIWSVFTGKLEKVLSLS---------------------- 428 (459)
T ss_pred -EEeeccccccccccceeEEC-----CCCceeeeccCCCcEEEEEccCceEEEEeccC----------------------
Confidence 112211 111224556676 99999999999999999999888763211100
Q ss_pred cccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecce
Q 007234 316 AAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGR 377 (612)
Q Consensus 316 ~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w 377 (612)
.....|.+++|+|.|..| ++++.++..++|
T Consensus 429 -------------------------------~s~~aI~s~~W~~sG~~L-lsadk~~~v~lW 458 (459)
T KOG0288|consen 429 -------------------------------TSNAAITSLSWNPSGSGL-LSADKQKAVTLW 458 (459)
T ss_pred -------------------------------CCCcceEEEEEcCCCchh-hcccCCcceEec
Confidence 000168999999999999 999999998888
No 70
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=3.1e-25 Score=198.70 Aligned_cols=235 Identities=16% Similarity=0.227 Sum_probs=190.1
Q ss_pred EEEcCCC-CEEEEEeCCCcEEEEECCC-CcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcE
Q 007234 11 TSFSPAL-DYFAICSGDARIKIWDTLK-GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (612)
Q Consensus 11 ~~fspdg-~~las~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (612)
++||++. +.+++++.||++++||..- ...++.++.|...|. .+.|.... +..
T Consensus 66 V~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~------------------Svdwn~~~--------r~~ 119 (311)
T KOG0277|consen 66 VAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVY------------------SVDWNTVR--------RRI 119 (311)
T ss_pred eeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheE------------------Eecccccc--------cee
Confidence 3899965 4677888999999999642 235666666655444 45555544 667
Q ss_pred EEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEec-CCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEEEE
Q 007234 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAV 167 (612)
Q Consensus 89 l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~ 167 (612)
+++++.||+|++|++..++.+.++ .+|...|....|+| ..+.++++|.|+++++||++.......+..|...+.|+.|
T Consensus 120 ~ltsSWD~TiKLW~~~r~~Sv~Tf-~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw 198 (311)
T KOG0277|consen 120 FLTSSWDGTIKLWDPNRPNSVQTF-NGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDW 198 (311)
T ss_pred EEeeccCCceEeecCCCCcceEee-cCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecc
Confidence 888899999999999999988776 68999999999999 6778999999999999999865555558999999999999
Q ss_pred CC-CCCEEEEeC--CeEEEEEcCCC-eeEEEEecCCCCEEEEEEeeCCc-EEEEEEcCCCeEEEEEcCCCccccceeeEe
Q 007234 168 SS-DGKMLATAA--GQLKTFNCSDH-KKMQKFSGHPGAVRFMTFSDNGK-YVLSSAVGERYIALWRTDGVKKQSASCVLA 242 (612)
Q Consensus 168 sp-dg~~l~~~~--g~i~lwd~~~~-~~~~~~~~h~~~v~~l~~sp~~~-~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~ 242 (612)
+. +...+++|+ +.|+.||+++. .++.++.+|.-.|..+.|||... .|+++ +.|-++++||...+.. ++.+
T Consensus 199 ~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSa-sYDmT~riw~~~~~ds----~~e~ 273 (311)
T KOG0277|consen 199 SKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASA-SYDMTVRIWDPERQDS----AIET 273 (311)
T ss_pred cccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhc-cccceEEecccccchh----hhhh
Confidence 97 556777777 89999999875 46888999999999999999765 45555 4899999999886643 3455
Q ss_pred ecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEEC
Q 007234 243 MEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (612)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~ 281 (612)
..++..++..+.++. .++.++++++.|+.++||+.
T Consensus 274 ~~~HtEFv~g~Dws~----~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 274 VDHHTEFVCGLDWSL----FDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hhccceEEecccccc----ccCceeeecccccceeeecc
Confidence 668888888888872 46789999999999999984
No 71
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.93 E-value=5.8e-26 Score=209.48 Aligned_cols=237 Identities=18% Similarity=0.231 Sum_probs=199.3
Q ss_pred CCCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEee-ccCCccccccccccccccccccceeEEEeeecccc
Q 007234 1 MGSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFA-DIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK 79 (612)
Q Consensus 1 ~~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~ 79 (612)
|...+| +|++||.|.+.||+|+.||.|+||.+.+|.|++.|. .|..+++++.|+.+
T Consensus 261 Mmd~aV--lci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD--------------------- 317 (508)
T KOG0275|consen 261 MMDDAV--LCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRD--------------------- 317 (508)
T ss_pred ecccce--EEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccC---------------------
Confidence 346788 677999999999999999999999999999999997 78888888888887
Q ss_pred cccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCC
Q 007234 80 KKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST 159 (612)
Q Consensus 80 ~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~ 159 (612)
+..+++++.|.++++.-+.+|+++..+ .+|++.|+...|.+||..++++|.||+|++|+.++.+++.+|+...
T Consensus 318 ------~SqiLS~sfD~tvRiHGlKSGK~LKEf-rGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~ 390 (508)
T KOG0275|consen 318 ------NSQILSASFDQTVRIHGLKSGKCLKEF-RGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLG 390 (508)
T ss_pred ------cchhhcccccceEEEeccccchhHHHh-cCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCC
Confidence 788999999999999999999999777 7899999999999999999999999999999999999999998644
Q ss_pred C--CeeEEEECCC-CCEEEEeC--CeEEEEEcCCCeeEEEEec---CCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCC
Q 007234 160 K--GISCMAVSSD-GKMLATAA--GQLKTFNCSDHKKMQKFSG---HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (612)
Q Consensus 160 ~--~v~~l~~spd-g~~l~~~~--g~i~lwd~~~~~~~~~~~~---h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~ 231 (612)
. +|.++-.-|. -..++++. +++++.++ .|+.++.|.. ..+..-+...+|.|.++++.+ +|+.++.|...+
T Consensus 391 ~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~-qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcig-ED~vlYCF~~~s 468 (508)
T KOG0275|consen 391 TDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGGDFINAILSPKGEWIYCIG-EDGVLYCFSVLS 468 (508)
T ss_pred CcccceeEEEcCCCCceEEEEcCCCeEEEEec-cceEEeeeccCCccCCceEEEEecCCCcEEEEEc-cCcEEEEEEeec
Confidence 3 7888887774 45666665 89999998 5778888853 234566778999999999998 899999999999
Q ss_pred CccccceeeEeec-CCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEE
Q 007234 232 VKKQSASCVLAME-HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY 280 (612)
Q Consensus 232 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd 280 (612)
++.. ..+. |...++ .+... |..+.+++-++||.+++|.
T Consensus 469 G~LE-----~tl~VhEkdvI-Gl~HH-----PHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 469 GKLE-----RTLPVHEKDVI-GLTHH-----PHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred Ccee-----eeeeccccccc-ccccC-----cccchhhhhcccchhhhcC
Confidence 8755 2223 333343 34443 7889999999999999994
No 72
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.6e-24 Score=219.16 Aligned_cols=240 Identities=19% Similarity=0.262 Sum_probs=201.4
Q ss_pred cccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccc
Q 007234 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (612)
Q Consensus 4 ~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (612)
..|.++ .|+++|++||+|..+|.|.|||..+.+.+..+.+ +....+.+++|.
T Consensus 218 ~~vtSv--~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~-----------------~h~~rvg~laW~--------- 269 (484)
T KOG0305|consen 218 ELVTSV--KWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRG-----------------SHASRVGSLAWN--------- 269 (484)
T ss_pred CceEEE--EECCCCCEEEEeecCCeEEEEehhhccccccccC-----------------CcCceeEEEecc---------
Confidence 456555 9999999999999999999999999888887764 124466788886
Q ss_pred cCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCee
Q 007234 84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGIS 163 (612)
Q Consensus 84 ~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~ 163 (612)
...+.+|+.+|.|..+|++..+.......+|...|.++.|++|+.++++|+.|+.+.+||....+++..+..|...|.
T Consensus 270 --~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVK 347 (484)
T KOG0305|consen 270 --SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVK 347 (484)
T ss_pred --CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeee
Confidence 457899999999999999988776565678999999999999999999999999999999988899999999999999
Q ss_pred EEEECC-CCCEEEEeC----CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEE-EEcCCCeEEEEEcCCCccccc
Q 007234 164 CMAVSS-DGKMLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLS-SAVGERYIALWRTDGVKKQSA 237 (612)
Q Consensus 164 ~l~~sp-dg~~l~~~~----g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s-~s~~d~~i~vwd~~~~~~~~~ 237 (612)
+++|+| ...+||+|+ +.|++||+.+++.+..+. ..+.|.++.|++..+-+++ .|..+..|.||+..+.+..
T Consensus 348 A~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~-- 424 (484)
T KOG0305|consen 348 ALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLV-- 424 (484)
T ss_pred EeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEecccccee--
Confidence 999999 567888887 589999999999988875 5678999999998865554 4555778999999886533
Q ss_pred eeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCc
Q 007234 238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (612)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~ 284 (612)
..+..|...+-.+..+ |||..+++|+.|.++++|++-..
T Consensus 425 ---~~l~gH~~RVl~la~S-----Pdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 425 ---AELLGHTSRVLYLALS-----PDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred ---eeecCCcceeEEEEEC-----CCCCEEEEecccCcEEeccccCC
Confidence 3344444445556676 99999999999999999997554
No 73
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.93 E-value=8e-25 Score=213.65 Aligned_cols=284 Identities=14% Similarity=0.197 Sum_probs=198.7
Q ss_pred CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEE-EEeeccCCccccccccccccccccccceeEEEeeeccccc
Q 007234 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQ-TEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (612)
Q Consensus 2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~ 80 (612)
|+..|.+| ++.|.|..|++||.|.+|++||....... ..|+.... .....+..+.|.+.
T Consensus 166 gtk~Vsal--~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P--------------~E~h~i~sl~ys~T---- 225 (641)
T KOG0772|consen 166 GTKIVSAL--AVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQP--------------CETHQINSLQYSVT---- 225 (641)
T ss_pred CceEEEEe--eecCCCceeeeccccceEEEEecccccccchhhhccCc--------------ccccccceeeecCC----
Confidence 46678555 99999999999999999999999754321 11211100 00122333444332
Q ss_pred ccccCCcEEEEEECCCcEEEEEcCCCeEEEE-----------eccCCCCCeEEEEEecCC-CEEEEEecCCcEEEEECCC
Q 007234 81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWR-----------LSDCHPGGVSAISFATHG-SCIYSAGADGMVCEIDPLT 148 (612)
Q Consensus 81 ~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~-----------~~~~h~~~V~~l~~sp~~-~~l~s~s~dg~v~iwd~~~ 148 (612)
+..|++.+.+...+|+|-..-+.... ..+||...++|.+|+|.. ..|+||+.||++++||+..
T Consensus 226 -----g~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~ 300 (641)
T KOG0772|consen 226 -----GDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNN 300 (641)
T ss_pred -----CCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCC
Confidence 78899999999999999654333211 136899999999999965 4599999999999999875
Q ss_pred Cc-eeEEEec-----CCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCee---EEEEecCCC--CEEEEEEeeCCcEEE
Q 007234 149 GS-LLGKFRA-----STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKK---MQKFSGHPG--AVRFMTFSDNGKYVL 215 (612)
Q Consensus 149 ~~-~~~~~~~-----~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~---~~~~~~h~~--~v~~l~~sp~~~~l~ 215 (612)
.+ +.+.++. ..-++++++|+|||+++|+|. |+|.+|+...... ...-..|.. .|+|+.||+||++|+
T Consensus 301 ~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~Ll 380 (641)
T KOG0772|consen 301 TKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLL 380 (641)
T ss_pred chhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhh
Confidence 43 3444432 233789999999999999888 9999999754322 222356776 899999999999999
Q ss_pred EEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEec------CCcEEEEECCCcceecc
Q 007234 216 SSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE------TGVCYIWYGQNIEELRN 289 (612)
Q Consensus 216 s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~------dg~i~iwd~~~~~~~~~ 289 (612)
+-| .|+++++||++..+... .++..-.......-++|+ |+.++|++|+. .|.+.+||..+.+.+..
T Consensus 381 SRg-~D~tLKvWDLrq~kkpL--~~~tgL~t~~~~tdc~FS-----Pd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~k 452 (641)
T KOG0772|consen 381 SRG-FDDTLKVWDLRQFKKPL--NVRTGLPTPFPGTDCCFS-----PDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYK 452 (641)
T ss_pred hcc-CCCceeeeeccccccch--hhhcCCCccCCCCccccC-----CCceEEEecccccCCCCCceEEEEeccceeeEEE
Confidence 998 69999999999876431 111111122223445666 99999999965 57899999999888776
Q ss_pred cCCceeEeecccccCCCCcccchhhhccccccee
Q 007234 290 TKATKILSSSEDVNSKSQKSATAAIFAAKLQDIV 323 (612)
Q Consensus 290 ~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~ 323 (612)
+......+.. ..+-|.-+ .|.+++.+|.+
T Consensus 453 i~i~~aSvv~-~~WhpkLN----Qi~~gsgdG~~ 481 (641)
T KOG0772|consen 453 IDISTASVVR-CLWHPKLN----QIFAGSGDGTA 481 (641)
T ss_pred ecCCCceEEE-Eeecchhh----heeeecCCCce
Confidence 6655443332 22555544 77788776543
No 74
>PTZ00421 coronin; Provisional
Probab=99.93 E-value=1.7e-23 Score=219.77 Aligned_cols=205 Identities=14% Similarity=0.201 Sum_probs=163.6
Q ss_pred CCcccceeEEEEcC-CCCEEEEEeCCCcEEEEECCCCc-------EEEEeeccCCccccccccccccccccccceeEEEe
Q 007234 2 GSSNIRDILTSFSP-ALDYFAICSGDARIKIWDTLKGQ-------VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKW 73 (612)
Q Consensus 2 ~s~~V~~l~~~fsp-dg~~las~s~dg~i~iwd~~~~~-------~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w 73 (612)
|+++|.++ +|+| ++++||+|+.||+|+|||+.++. .+..+.+|...+. ++.|
T Consensus 74 H~~~V~~v--~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~------------------~l~f 133 (493)
T PTZ00421 74 QEGPIIDV--AFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVG------------------IVSF 133 (493)
T ss_pred CCCCEEEE--EEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEE------------------EEEe
Confidence 45778655 9999 89999999999999999997653 3445555554444 5555
Q ss_pred eecccccccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeE
Q 007234 74 LSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLG 153 (612)
Q Consensus 74 ~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~ 153 (612)
.+.. +.+|++|+.||.|+|||+.+++....+ .+|...|.+++|+|+|..|++++.|++|++||+++++.+.
T Consensus 134 ~P~~--------~~iLaSgs~DgtVrIWDl~tg~~~~~l-~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~ 204 (493)
T PTZ00421 134 HPSA--------MNVLASAGADMVVNVWDVERGKAVEVI-KCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVS 204 (493)
T ss_pred CcCC--------CCEEEEEeCCCEEEEEECCCCeEEEEE-cCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEE
Confidence 5432 468999999999999999999887666 6799999999999999999999999999999999999999
Q ss_pred EEecCCCC-eeEEEECCCCCEEEEeC------CeEEEEEcCCCe-eEEEEecC-CCCEEEEEEeeCCcEEEEEEcCCCeE
Q 007234 154 KFRASTKG-ISCMAVSSDGKMLATAA------GQLKTFNCSDHK-KMQKFSGH-PGAVRFMTFSDNGKYVLSSAVGERYI 224 (612)
Q Consensus 154 ~~~~~~~~-v~~l~~spdg~~l~~~~------g~i~lwd~~~~~-~~~~~~~h-~~~v~~l~~sp~~~~l~s~s~~d~~i 224 (612)
.+.+|... +..+.|.+++..+++++ +.|++||+++.. ++.....+ ...+....|+++++++++++..|+.|
T Consensus 205 tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~I 284 (493)
T PTZ00421 205 SVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNI 284 (493)
T ss_pred EEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeE
Confidence 99888764 45778999887777643 689999998754 34433333 34566677899999998887569999
Q ss_pred EEEEcCCCccc
Q 007234 225 ALWRTDGVKKQ 235 (612)
Q Consensus 225 ~vwd~~~~~~~ 235 (612)
++||+.+++..
T Consensus 285 riwdl~~~~~~ 295 (493)
T PTZ00421 285 RCFELMNERLT 295 (493)
T ss_pred EEEEeeCCceE
Confidence 99999987643
No 75
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=7.1e-24 Score=195.62 Aligned_cols=287 Identities=18% Similarity=0.203 Sum_probs=196.8
Q ss_pred CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (612)
Q Consensus 2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (612)
|...|.++ +||.||++||+++.|++|+||+++...... |. ++..+. . ....+.+.|.+.-
T Consensus 85 H~~~vt~~--~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~e----Hr----~~R~nv--e----~dhpT~V~FapDc---- 144 (420)
T KOG2096|consen 85 HKKEVTDV--AFSSDGKKLATISGDRSIRLWDVRDFENKE----HR----CIRQNV--E----YDHPTRVVFAPDC---- 144 (420)
T ss_pred cCCceeee--EEcCCCceeEEEeCCceEEEEecchhhhhh----hh----Hhhccc--c----CCCceEEEECCCc----
Confidence 45788655 999999999999999999999998643211 10 000000 0 1122333433332
Q ss_pred cccCCcEEEEEECCCcEEEEEcCC---CeEE--------EEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCc
Q 007234 82 RKLGSSLLVLGTGGGDVLALAVSA---GQLK--------WRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS 150 (612)
Q Consensus 82 ~~~~~~~l~~gs~~g~I~vwd~~~---~~~~--------~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~ 150 (612)
..+++.+-...++++|.+.. |... ..+...|...|..+-...++.++++|+.|..|.+|+++ |+
T Consensus 145 ----~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq 219 (420)
T KOG2096|consen 145 ----KSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQ 219 (420)
T ss_pred ----ceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cc
Confidence 33444444445589997743 2111 12345677888888888889999999999999999998 99
Q ss_pred eeEEEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcC---CC-----eeEEEEecCCCCEEEEEEeeCCcEEEEEEcC
Q 007234 151 LLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCS---DH-----KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVG 220 (612)
Q Consensus 151 ~~~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~---~~-----~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~ 220 (612)
.+..+......-+..+++|+|+++++++ -.|++|.+- .| ..+.++.||.+.|..++|+|+...+++.+ .
T Consensus 220 ~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvS-k 298 (420)
T KOG2096|consen 220 LLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVS-K 298 (420)
T ss_pred eeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEe-c
Confidence 9999988777778899999999999988 689999862 22 34567899999999999999999999997 8
Q ss_pred CCeEEEEEcCCCcccc--ceeeEe----e-cCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCc
Q 007234 221 ERYIALWRTDGVKKQS--ASCVLA----M-EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKAT 293 (612)
Q Consensus 221 d~~i~vwd~~~~~~~~--~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~ 293 (612)
||.+++||++-.-... ...... + ......+ -+..+ |+|..|+.+.. ..+++|..++|+...+.
T Consensus 299 DG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~-RL~ls-----P~g~~lA~s~g-s~l~~~~se~g~~~~~~--- 368 (420)
T KOG2096|consen 299 DGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPV-RLELS-----PSGDSLAVSFG-SDLKVFASEDGKDYPEL--- 368 (420)
T ss_pred CCcEEEeeccceEecCCCchHhhcCCcchhhcCCCce-EEEeC-----CCCcEEEeecC-CceEEEEcccCccchhH---
Confidence 9999999986421110 000011 1 1112222 34454 88887766543 47888877666543211
Q ss_pred eeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceee
Q 007234 294 KILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKS 373 (612)
Q Consensus 294 ~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~ 373 (612)
| ..|...|.+++|++||+++ +|++ |+-
T Consensus 369 -------------------------------------------------e--~~h~~~Is~is~~~~g~~~-atcG-dr~ 395 (420)
T KOG2096|consen 369 -------------------------------------------------E--DIHSTTISSISYSSDGKYI-ATCG-DRY 395 (420)
T ss_pred -------------------------------------------------H--HhhcCceeeEEecCCCcEE-eeec-cee
Confidence 1 2477789999999999999 9988 444
Q ss_pred ecce
Q 007234 374 KRGR 377 (612)
Q Consensus 374 ~~~w 377 (612)
+++.
T Consensus 396 vrv~ 399 (420)
T KOG2096|consen 396 VRVI 399 (420)
T ss_pred eeee
Confidence 4443
No 76
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=2.2e-24 Score=210.01 Aligned_cols=230 Identities=14% Similarity=0.192 Sum_probs=191.4
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEE
Q 007234 10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (612)
Q Consensus 10 ~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (612)
+++|-.||++||.|...|.|+|||..+...+..+..|..++....|++. + +..+
T Consensus 73 s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~------------------d--------~t~l 126 (487)
T KOG0310|consen 73 SVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQ------------------D--------NTML 126 (487)
T ss_pred EEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEeccc------------------C--------CeEE
Confidence 3489999999999999999999997776677778877777766666554 1 6778
Q ss_pred EEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCC-CEEEEEecCCcEEEEECCCC-ceeEEEecCCCCeeEEEE
Q 007234 90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHG-SCIYSAGADGMVCEIDPLTG-SLLGKFRASTKGISCMAV 167 (612)
Q Consensus 90 ~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~-~~l~s~s~dg~v~iwd~~~~-~~~~~~~~~~~~v~~l~~ 167 (612)
++|+.|+.+++||+.++... ....+|++.|.|.+|+|.. ..++|||.||+|++||+++. ..+.++. |..+|.++.+
T Consensus 127 ~s~sDd~v~k~~d~s~a~v~-~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~ 204 (487)
T KOG0310|consen 127 VSGSDDKVVKYWDLSTAYVQ-AELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLA 204 (487)
T ss_pred EecCCCceEEEEEcCCcEEE-EEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEE
Confidence 88888999999999999874 3447899999999999954 47999999999999999887 5666665 7889999999
Q ss_pred CCCCCEEEEeC-CeEEEEEcCCC-eeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecC
Q 007234 168 SSDGKMLATAA-GQLKTFNCSDH-KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEH 245 (612)
Q Consensus 168 spdg~~l~~~~-g~i~lwd~~~~-~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~ 245 (612)
-|.|.++++++ ..+++||+.+| +.+..+..|...|+|+++..++..|+++| -|+.|++||+.+-+ .+....-
T Consensus 205 lpsgs~iasAgGn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~s-LD~~VKVfd~t~~K-----vv~s~~~ 278 (487)
T KOG0310|consen 205 LPSGSLIASAGGNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGS-LDRHVKVFDTTNYK-----VVHSWKY 278 (487)
T ss_pred cCCCCEEEEcCCCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecc-cccceEEEEccceE-----EEEeeec
Confidence 99999999998 79999999855 55666666999999999999999999998 69999999976655 4456666
Q ss_pred CceeEEeEEecCCccCCCCcEEEEEecCCcEEEE
Q 007234 246 PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIW 279 (612)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iw 279 (612)
+..++++. .+ |++..++.|..+|.+.+=
T Consensus 279 ~~pvLsia-vs-----~dd~t~viGmsnGlv~~r 306 (487)
T KOG0310|consen 279 PGPVLSIA-VS-----PDDQTVVIGMSNGLVSIR 306 (487)
T ss_pred ccceeeEE-ec-----CCCceEEEecccceeeee
Confidence 66666654 33 899999999999988765
No 77
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.2e-24 Score=218.19 Aligned_cols=231 Identities=17% Similarity=0.215 Sum_probs=191.8
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCc------EEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcE
Q 007234 15 PALDYFAICSGDARIKIWDTLKGQ------VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (612)
Q Consensus 15 pdg~~las~s~dg~i~iwd~~~~~------~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (612)
|.++||.+||.||.|++|++.... ++..+..|...+..++.... ++.
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~---------------------------~~t 87 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGN---------------------------GKT 87 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcC---------------------------CCc
Confidence 467789999999999999886432 46677888888887777666 778
Q ss_pred EEEEECCCcEEEEEcCCC--eEEEEeccCCCCCeEEEEE-ecCCCEEEEEecCCcEEEEECCCC--ceeEE--------E
Q 007234 89 LVLGTGGGDVLALAVSAG--QLKWRLSDCHPGGVSAISF-ATHGSCIYSAGADGMVCEIDPLTG--SLLGK--------F 155 (612)
Q Consensus 89 l~~gs~~g~I~vwd~~~~--~~~~~~~~~h~~~V~~l~~-sp~~~~l~s~s~dg~v~iwd~~~~--~~~~~--------~ 155 (612)
+++++.|-+|++|+...+ -+...+ ..|...|.|+++ .++...+++||.|+.|.+||+.++ +.+.. +
T Consensus 88 lIS~SsDtTVK~W~~~~~~~~c~sti-r~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl 166 (735)
T KOG0308|consen 88 LISASSDTTVKVWNAHKDNTFCMSTI-RTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSL 166 (735)
T ss_pred eEEecCCceEEEeecccCcchhHhhh-hcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccC
Confidence 999999999999999887 344333 679999999999 788889999999999999999987 23222 2
Q ss_pred e-cCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCC
Q 007234 156 R-ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (612)
Q Consensus 156 ~-~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~ 232 (612)
. ++..+|++++.++.|..+++|+ +.+++||.++++.+..+.||...|..+..++||+.+++++ .||+|++||+...
T Consensus 167 ~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~s-SDgtIrlWdLgqQ 245 (735)
T KOG0308|consen 167 GSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSAS-SDGTIRLWDLGQQ 245 (735)
T ss_pred CCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecC-CCceEEeeecccc
Confidence 2 5677999999999999999988 8999999999999999999999999999999999999998 5999999999887
Q ss_pred ccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCc
Q 007234 233 KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (612)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~ 284 (612)
++. .++..+...+-.+..+ |+=.++.+|+.||.|..=|+.+.
T Consensus 246 rCl-----~T~~vH~e~VWaL~~~-----~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 246 RCL-----ATYIVHKEGVWALQSS-----PSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred cee-----eeEEeccCceEEEeeC-----CCcceEEecCCCCcEEecccCCc
Confidence 744 4444444434444444 77789999999999999888774
No 78
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.93 E-value=3.8e-24 Score=224.81 Aligned_cols=239 Identities=20% Similarity=0.291 Sum_probs=200.4
Q ss_pred CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (612)
Q Consensus 2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (612)
|.+.|+.+ +|..-+.+|++|+.|.+++|||..+|++..++.+|.+.+.++...
T Consensus 248 H~g~V~~l--~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~------------------------- 300 (537)
T KOG0274|consen 248 HFGGVWGL--AFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID------------------------- 300 (537)
T ss_pred CCCCceeE--EEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEcc-------------------------
Confidence 56788766 888878899999999999999999999999999887655432222
Q ss_pred cccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCC
Q 007234 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG 161 (612)
Q Consensus 82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~ 161 (612)
+..++.|+.|.+|++|++.++.++..+ .+|.++|.++..+ +..+++|+.|++|++||+.+++++.++.+|...
T Consensus 301 ----~~~~~sgs~D~tVkVW~v~n~~~l~l~-~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~ 373 (537)
T KOG0274|consen 301 ----PFLLVSGSRDNTVKVWDVTNGACLNLL-RGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGR 373 (537)
T ss_pred ----CceEeeccCCceEEEEeccCcceEEEe-ccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcce
Confidence 446778899999999999999999666 5699999999997 779999999999999999999999999999999
Q ss_pred eeEEEECCCCCEEEEeC--CeEEEEEcCCC-eeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccce
Q 007234 162 ISCMAVSSDGKMLATAA--GQLKTFNCSDH-KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS 238 (612)
Q Consensus 162 v~~l~~spdg~~l~~~~--g~i~lwd~~~~-~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~ 238 (612)
|+++.+.+. ..+++|+ ++|++||+++. +++..+.+|..-+..+.+ .+++|++++ .|++|++||..+++..
T Consensus 374 V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~-aD~~Ik~WD~~~~~~~--- 446 (537)
T KOG0274|consen 374 VYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSS-ADGTIKLWDAEEGECL--- 446 (537)
T ss_pred EEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeEecc-ccccEEEeecccCcee---
Confidence 999988765 8888888 89999999999 999999999999976655 467888887 7999999999998744
Q ss_pred eeEeecC-CceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceeccc
Q 007234 239 CVLAMEH-PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT 290 (612)
Q Consensus 239 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~ 290 (612)
..+.. +...+..+.+ ....+++++.||.+++||+++++..+..
T Consensus 447 --~~~~~~~~~~v~~l~~-------~~~~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 447 --RTLEGRHVGGVSALAL-------GKEEILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred --eeeccCCcccEEEeec-------CcceEEEEecCCeeEEEecccCchhhhh
Confidence 44444 3333344433 2378999999999999999999887644
No 79
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=6.3e-24 Score=195.99 Aligned_cols=242 Identities=19% Similarity=0.263 Sum_probs=195.8
Q ss_pred CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (612)
Q Consensus 2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (612)
|.++|++++| +|.|+|+||.|-+|+|||..+...+..+..|.+.++++.|.++..
T Consensus 42 H~~sitavAV----s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S--------------------- 96 (362)
T KOG0294|consen 42 HAGSITALAV----SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLS--------------------- 96 (362)
T ss_pred cccceeEEEe----cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcc---------------------
Confidence 5677766633 589999999999999999999999998888888888777777611
Q ss_pred cccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCC
Q 007234 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG 161 (612)
Q Consensus 82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~ 161 (612)
.+.|++|+.||.|.+|+.....++..+ ++|.+.|+.++.+|.|++-++.+.|+.++.||+-+|+.-...+- ...
T Consensus 97 ----~shLlS~sdDG~i~iw~~~~W~~~~sl-K~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L-~~~ 170 (362)
T KOG0294|consen 97 ----KSHLLSGSDDGHIIIWRVGSWELLKSL-KAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNL-KNK 170 (362)
T ss_pred ----hhheeeecCCCcEEEEEcCCeEEeeee-cccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeecc-CCc
Confidence 236899999999999999999888776 68999999999999999999999999999999999987666553 233
Q ss_pred eeEEEECCCCCEEEEeC-CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceee
Q 007234 162 ISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV 240 (612)
Q Consensus 162 v~~l~~spdg~~l~~~~-g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~ 240 (612)
.+.+.|+|.|.+++.+. ..|-+|.+.+.+....+.. +..+.++.|-. +..+++++ .|+.|.+||.+..... .
T Consensus 171 at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~-~~r~l~~~~l~-~~~L~vG~-d~~~i~~~D~ds~~~~----~ 243 (362)
T KOG0294|consen 171 ATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIEN-PKRILCATFLD-GSELLVGG-DNEWISLKDTDSDTPL----T 243 (362)
T ss_pred ceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhc-cccceeeeecC-CceEEEec-CCceEEEeccCCCccc----e
Confidence 46699999999888887 8999999988877666643 35567777765 44677887 6999999999885433 2
Q ss_pred EeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcc
Q 007234 241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE 285 (612)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~ 285 (612)
....|...+-.+..+. +|++.+|++++.||.|++||++...
T Consensus 244 ~~~AH~~RVK~i~~~~----~~~~~~lvTaSSDG~I~vWd~~~~~ 284 (362)
T KOG0294|consen 244 EFLAHENRVKDIASYT----NPEHEYLVTASSDGFIKVWDIDMET 284 (362)
T ss_pred eeecchhheeeeEEEe----cCCceEEEEeccCceEEEEEccccc
Confidence 3345666666666565 4889999999999999999987653
No 80
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.92 E-value=4.9e-25 Score=196.77 Aligned_cols=242 Identities=15% Similarity=0.240 Sum_probs=204.0
Q ss_pred CcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccc
Q 007234 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (612)
Q Consensus 3 s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (612)
.++|+ .++.+.+...-|+++.|=+-+|||.-+|..+++|. |..-|..+.|+.+
T Consensus 59 kgavw--~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~d------------------------ 111 (334)
T KOG0278|consen 59 KGAVW--SATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQD------------------------ 111 (334)
T ss_pred Cccee--eeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEeccc------------------------
Confidence 45674 44888888888999999999999999999999885 5555555556555
Q ss_pred ccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCe
Q 007234 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI 162 (612)
Q Consensus 83 ~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v 162 (612)
.++|++|+.+.-++|||++..+....-..+|++.|..+-|....+.+++++.|++||+||.+++..++++. ...+|
T Consensus 112 ---s~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~V 187 (334)
T KOG0278|consen 112 ---SNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPV 187 (334)
T ss_pred ---chhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe-cCCCC
Confidence 77899999999999999998765545557899999999999988999999999999999999999999988 46789
Q ss_pred eEEEECCCCCEEEEeC-CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeE
Q 007234 163 SCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVL 241 (612)
Q Consensus 163 ~~l~~spdg~~l~~~~-g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~ 241 (612)
+++.+++||+++.++. +.|.+||.++..+++.+. -...|.+...+|+...+++++ +|..++.||..++..+. .+
T Consensus 188 tSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k-~P~nV~SASL~P~k~~fVaGg-ed~~~~kfDy~TgeEi~---~~ 262 (334)
T KOG0278|consen 188 TSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYK-MPCNVESASLHPKKEFFVAGG-EDFKVYKFDYNTGEEIG---SY 262 (334)
T ss_pred cceeeccCCCEEEEecCceeEEeccccccceeecc-CccccccccccCCCceEEecC-cceEEEEEeccCCceee---ec
Confidence 9999999999999998 899999999998888876 456688999999998888776 89999999999998662 22
Q ss_pred eecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcce
Q 007234 242 AMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE 286 (612)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~ 286 (612)
. ..+...+.++.|+ |||..-++||+||+|++|....++.
T Consensus 263 n-kgh~gpVhcVrFS-----PdGE~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 263 N-KGHFGPVHCVRFS-----PDGELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred c-cCCCCceEEEEEC-----CCCceeeccCCCceEEEEEecCCCc
Confidence 2 3444556788898 9999999999999999998665543
No 81
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.92 E-value=3.7e-24 Score=216.06 Aligned_cols=338 Identities=13% Similarity=0.109 Sum_probs=235.5
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEE---EeeccCCccccccccccccccccccceeEEEeeeccccccccc
Q 007234 8 DILTSFSPALDYFAICSGDARIKIWDTLKGQVQT---EFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (612)
Q Consensus 8 ~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~---~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (612)
.++|.|+|..++|.+...|..+.|||++.-..+. .+--|...++++.--+- .-...... ..
T Consensus 327 ~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~---nv~~~~~a-------------cl 390 (1080)
T KOG1408|consen 327 AIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPC---NVHSPTAA-------------CL 390 (1080)
T ss_pred eeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccc---cccCcccc-------------cC
Confidence 3688999999999999999999999998654322 22223332222111110 00000000 11
Q ss_pred CCcEEEEEECCCcEEEEEcCCC---eEEEE-ec--------------------------------cCCCCCeEEEEEecC
Q 007234 85 GSSLLVLGTGGGDVLALAVSAG---QLKWR-LS--------------------------------DCHPGGVSAISFATH 128 (612)
Q Consensus 85 ~~~~l~~gs~~g~I~vwd~~~~---~~~~~-~~--------------------------------~~h~~~V~~l~~sp~ 128 (612)
....+++++.||+|++||+..+ +..++ ++ -.....+.+++.+|+
T Consensus 391 p~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~ 470 (1080)
T KOG1408|consen 391 PRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPD 470 (1080)
T ss_pred CccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCC
Confidence 2456899999999999999762 22111 00 012346899999999
Q ss_pred CCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEEEECC---CCCEEEEeC--CeEEEEEcCCC-eeEEEEecCCCCE
Q 007234 129 GSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSS---DGKMLATAA--GQLKTFNCSDH-KKMQKFSGHPGAV 202 (612)
Q Consensus 129 ~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~sp---dg~~l~~~~--g~i~lwd~~~~-~~~~~~~~h~~~v 202 (612)
|++|++|..-|++++||+..-+....+.+|+..|.|+.|+. ..++||+++ ..|++||+... .++.++.+|...|
T Consensus 471 gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssI 550 (1080)
T KOG1408|consen 471 GQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSI 550 (1080)
T ss_pred cceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccce
Confidence 99999999999999999999998889999999999999985 357888888 68999998754 5678899999999
Q ss_pred EEEEEeeCC--cEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEE
Q 007234 203 RFMTFSDNG--KYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY 280 (612)
Q Consensus 203 ~~l~~sp~~--~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd 280 (612)
+++.|.-.| ..++++| .|+.|. |+....... ..++...++. . .-......+++|..+++++++.|..|+|||
T Consensus 551 TsvKFa~~gln~~MiscG-ADksim-Fr~~qk~~~--g~~f~r~t~t-~-~ktTlYDm~Vdp~~k~v~t~cQDrnirif~ 624 (1080)
T KOG1408|consen 551 TSVKFACNGLNRKMISCG-ADKSIM-FRVNQKASS--GRLFPRHTQT-L-SKTTLYDMAVDPTSKLVVTVCQDRNIRIFD 624 (1080)
T ss_pred eEEEEeecCCceEEEecc-Cchhhh-eehhccccC--ceeccccccc-c-ccceEEEeeeCCCcceEEEEecccceEEEe
Confidence 999999877 6788887 688765 443321100 0112211111 1 111111222348999999999999999999
Q ss_pred CCCcceecccCCceeEeeccc--ccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEec
Q 007234 281 GQNIEELRNTKATKILSSSED--VNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCS 358 (612)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~--~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S 358 (612)
++++++.+.++..+....... ...|.+. ++++...|..+-.+| -....+..++.+|...|+.+-|+
T Consensus 625 i~sgKq~k~FKgs~~~eG~lIKv~lDPSgi----Y~atScsdktl~~~D--------f~sgEcvA~m~GHsE~VTG~kF~ 692 (1080)
T KOG1408|consen 625 IESGKQVKSFKGSRDHEGDLIKVILDPSGI----YLATSCSDKTLCFVD--------FVSGECVAQMTGHSEAVTGVKFL 692 (1080)
T ss_pred ccccceeeeecccccCCCceEEEEECCCcc----EEEEeecCCceEEEE--------eccchhhhhhcCcchheeeeeec
Confidence 999999988876644322211 1234555 777777766444333 22334555788999999999999
Q ss_pred CCCceEeccccceeeecceeee
Q 007234 359 QDGVLLPMSQSLLKSKRGRYVQ 380 (612)
Q Consensus 359 ~dg~~l~~s~s~d~~~~~w~~~ 380 (612)
+|-+.| +|.+.|+-|.+|.+.
T Consensus 693 nDCkHl-ISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 693 NDCKHL-ISVSGDGCIFVWKLP 713 (1080)
T ss_pred ccchhh-eeecCCceEEEEECc
Confidence 999999 999999999999874
No 82
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.92 E-value=1.1e-23 Score=223.70 Aligned_cols=286 Identities=16% Similarity=0.120 Sum_probs=215.1
Q ss_pred eEEEEcCCCCEEEEEe--CCCcEEEEECCCC------------cEEEEeeccCCccccccccccccccccccceeEEEee
Q 007234 9 ILTSFSPALDYFAICS--GDARIKIWDTLKG------------QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWL 74 (612)
Q Consensus 9 l~~~fspdg~~las~s--~dg~i~iwd~~~~------------~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~ 74 (612)
.+++.+|||..+|+|+ .||.++||+.+.- +.+.....|.+.+.|..|+++
T Consensus 17 fSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~d---------------- 80 (942)
T KOG0973|consen 17 FSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPD---------------- 80 (942)
T ss_pred EEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCC----------------
Confidence 4559999999999999 7999999987521 122334445555554444444
Q ss_pred ecccccccccCCcEEEEEECCCcEEEEEcCC-------C-----------eEEEEeccCCCCCeEEEEEecCCCEEEEEe
Q 007234 75 SVDRKKKRKLGSSLLVLGTGGGDVLALAVSA-------G-----------QLKWRLSDCHPGGVSAISFATHGSCIYSAG 136 (612)
Q Consensus 75 ~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~-------~-----------~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s 136 (612)
+.++|+|+.|+.|.||.-.. | ++. ..+.+|.+.|.+++|+|++.+|+++|
T Consensus 81 -----------G~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~-~~l~~H~~DV~Dv~Wsp~~~~lvS~s 148 (942)
T KOG0973|consen 81 -----------GSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVV-SILRGHDSDVLDVNWSPDDSLLVSVS 148 (942)
T ss_pred -----------CCeEeeccCcceEEEeeecccCCcccccccccccccceeeEE-EEEecCCCccceeccCCCccEEEEec
Confidence 89999999999999999872 0 123 33468999999999999999999999
Q ss_pred cCCcEEEEECCCCceeEEEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCC------CCEEEEEEe
Q 007234 137 ADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHP------GAVRFMTFS 208 (612)
Q Consensus 137 ~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~------~~v~~l~~s 208 (612)
.|++|.+||..+.+.+..+++|...|-.+.|.|-|+++|+-+ ++|++|++.+....+.+.++- .....+.||
T Consensus 149 ~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWS 228 (942)
T KOG0973|consen 149 LDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWS 228 (942)
T ss_pred ccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccC
Confidence 999999999999999999999999999999999999999988 899999987766666665443 357789999
Q ss_pred eCCcEEEEEEcCC---CeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCc------------EEEEEecC
Q 007234 209 DNGKYVLSSAVGE---RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGL------------YVLAISET 273 (612)
Q Consensus 209 p~~~~l~s~s~~d---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~l~t~s~d 273 (612)
|||.+|++.-.-. .++.|.+-.+.+. -..+-.|...+.++.|.+..+..... .+|+|+.|
T Consensus 229 PDG~~las~nA~n~~~~~~~IieR~tWk~-----~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqD 303 (942)
T KOG0973|consen 229 PDGHHLASPNAVNGGKSTIAIIERGTWKV-----DKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQD 303 (942)
T ss_pred CCcCeecchhhccCCcceeEEEecCCcee-----eeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCC
Confidence 9999999864322 2577776555442 23333445577888888654432222 67888999
Q ss_pred CcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeE
Q 007234 274 GVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDI 353 (612)
Q Consensus 274 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~ 353 (612)
+.|.||.....+.+. .+.. .-...|.
T Consensus 304 rSlSVW~T~~~RPl~---------------------------vi~~---------------------------lf~~SI~ 329 (942)
T KOG0973|consen 304 RSLSVWNTALPRPLF---------------------------VIHN---------------------------LFNKSIV 329 (942)
T ss_pred ccEEEEecCCCCchh---------------------------hhhh---------------------------hhcCcee
Confidence 999999754333321 1110 0112688
Q ss_pred EEEecCCCceEeccccceeeecceeeecc
Q 007234 354 NLNCSQDGVLLPMSQSLLKSKRGRYVQNR 382 (612)
Q Consensus 354 ~l~~S~dg~~l~~s~s~d~~~~~w~~~~~ 382 (612)
.++|||||..| +.+|.|+++.+-.++++
T Consensus 330 DmsWspdG~~L-facS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 330 DMSWSPDGFSL-FACSLDGTVALIHFEEK 357 (942)
T ss_pred eeeEcCCCCeE-EEEecCCeEEEEEcchH
Confidence 99999999999 99999999999887543
No 83
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=4.3e-24 Score=203.25 Aligned_cols=242 Identities=16% Similarity=0.288 Sum_probs=195.3
Q ss_pred CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (612)
Q Consensus 2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (612)
++.+| ..+.||||.+||++|+.|..+++||+.+|.+...+.. + +....++++|.|.
T Consensus 268 h~~~V--~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~----------------~-~~~S~~sc~W~pD----- 323 (519)
T KOG0293|consen 268 HSQPV--SYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPS----------------G-LGFSVSSCAWCPD----- 323 (519)
T ss_pred ccCce--EEEEECCCCCeEEecCchHheeeccCCcchhhhhccc----------------C-cCCCcceeEEccC-----
Confidence 45678 4559999999999999999999999999999887742 2 3456678889887
Q ss_pred cccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCC
Q 007234 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG 161 (612)
Q Consensus 82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~ 161 (612)
+..+++|+.|+.+..||+..+.. ..........|.+++.++||+++++.+.|..|++++.++......+. ...+
T Consensus 324 ----g~~~V~Gs~dr~i~~wdlDgn~~-~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis-e~~~ 397 (519)
T KOG0293|consen 324 ----GFRFVTGSPDRTIIMWDLDGNIL-GNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLIS-EEQP 397 (519)
T ss_pred ----CceeEecCCCCcEEEecCCcchh-hcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccc-ccCc
Confidence 67799999999999999976543 23322234569999999999999999999999999987665544443 4568
Q ss_pred eeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCC--EEEEEEee-CCcEEEEEEcCCCeEEEEEcCCCcccc
Q 007234 162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGA--VRFMTFSD-NGKYVLSSAVGERYIALWRTDGVKKQS 236 (612)
Q Consensus 162 v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~--v~~l~~sp-~~~~l~s~s~~d~~i~vwd~~~~~~~~ 236 (612)
|++.+.|.||+++++.- ..+++||++..+.++++.||... +-.-+|-. +..++++|+ +|+.|+||+..+++..
T Consensus 398 its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGS-ED~kvyIWhr~sgkll- 475 (519)
T KOG0293|consen 398 ITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGS-EDSKVYIWHRISGKLL- 475 (519)
T ss_pred eeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecC-CCceEEEEEccCCcee-
Confidence 99999999999998876 89999999999999999999865 33335654 345666665 8999999999998844
Q ss_pred ceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCC
Q 007234 237 ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN 283 (612)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~ 283 (612)
..+.++...+.+++++| .+..++|+++.||+|+||....
T Consensus 476 ----~~LsGHs~~vNcVswNP----~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 476 ----AVLSGHSKTVNCVSWNP----ADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred ----EeecCCcceeeEEecCC----CCHHHhhccCCCCeEEEecCCc
Confidence 56778888889999984 4668899999999999997653
No 84
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.92 E-value=4.6e-23 Score=186.09 Aligned_cols=200 Identities=14% Similarity=0.210 Sum_probs=174.9
Q ss_pred CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (612)
Q Consensus 2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (612)
|..|++.+ .|+.+|.+|.+|+.|.+..||-..+|+.+-++.+|.+.|.++....+
T Consensus 9 HERplTqi--KyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~----------------------- 63 (327)
T KOG0643|consen 9 HERPLTQI--KYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWD----------------------- 63 (327)
T ss_pred CccccceE--EecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCC-----------------------
Confidence 35688777 99999999999999999999999999999999999988775555444
Q ss_pred cccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEec-----CCcEEEEECC-------CC
Q 007234 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA-----DGMVCEIDPL-------TG 149 (612)
Q Consensus 82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~-----dg~v~iwd~~-------~~ 149 (612)
...+++|+.|.++++||+++|+++..+. ...+|..+.|+++|++++.+.. .+.|.++|++ ..
T Consensus 64 ----s~~liTGSAD~t~kLWDv~tGk~la~~k--~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ 137 (327)
T KOG0643|consen 64 ----SKHLITGSADQTAKLWDVETGKQLATWK--TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSE 137 (327)
T ss_pred ----cceeeeccccceeEEEEcCCCcEEEEee--cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhccc
Confidence 6789999999999999999999998874 5689999999999988776643 4679999998 45
Q ss_pred ceeEEEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCe-eEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEE
Q 007234 150 SLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHK-KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIAL 226 (612)
Q Consensus 150 ~~~~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~-~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~v 226 (612)
++...+..+...++.+-|.|-++.|++|. |.|..||.++|+ .+..-..|...|+.|.++||..++++++ .|.+-++
T Consensus 138 ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s-~Dttakl 216 (327)
T KOG0643|consen 138 EPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGS-KDTTAKL 216 (327)
T ss_pred CceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecc-cCcccee
Confidence 67888888889999999999999999998 999999999985 4566678999999999999999999997 7999999
Q ss_pred EEcCCCc
Q 007234 227 WRTDGVK 233 (612)
Q Consensus 227 wd~~~~~ 233 (612)
||..+-.
T Consensus 217 ~D~~tl~ 223 (327)
T KOG0643|consen 217 VDVRTLE 223 (327)
T ss_pred eecccee
Confidence 9987654
No 85
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.5e-22 Score=178.14 Aligned_cols=246 Identities=20% Similarity=0.283 Sum_probs=193.0
Q ss_pred CcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcE-----EEEeeccCCccccccccccccccccccceeEEEeeecc
Q 007234 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQV-----QTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVD 77 (612)
Q Consensus 3 s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~ 77 (612)
.+.| .|.+|||+|+++|+|++|.+|++.-.....+ -.+|.-|.+.+...+|-.+ .
T Consensus 89 kgsi--yc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~------------------~ 148 (350)
T KOG0641|consen 89 KGSI--YCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDD------------------P 148 (350)
T ss_pred CccE--EEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecC------------------C
Confidence 4567 4669999999999999999999976543332 2345666666666555544 1
Q ss_pred cccccccCCcEEEEEE-CCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEe
Q 007234 78 RKKKRKLGSSLLVLGT-GGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR 156 (612)
Q Consensus 78 ~~~~~~~~~~~l~~gs-~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~ 156 (612)
.. ++.++++++ .|.+|++-|..+|+....+ .+|++.|.++. +-+|-.+++|+.|.+|++||++-..++.++.
T Consensus 149 ~s-----~~~il~s~gagdc~iy~tdc~~g~~~~a~-sghtghilaly-swn~~m~~sgsqdktirfwdlrv~~~v~~l~ 221 (350)
T KOG0641|consen 149 ES-----GGAILASAGAGDCKIYITDCGRGQGFHAL-SGHTGHILALY-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLD 221 (350)
T ss_pred Cc-----CceEEEecCCCcceEEEeecCCCCcceee-cCCcccEEEEE-EecCcEEEccCCCceEEEEeeeccceeeecc
Confidence 10 144555443 4556888899999988776 68999999883 4468899999999999999999988888764
Q ss_pred cC-------CCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEE
Q 007234 157 AS-------TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALW 227 (612)
Q Consensus 157 ~~-------~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vw 227 (612)
.. ...|.++++.|.|++|++|. ....+||++.++.++.+..|...|.++.|+|...|+++++ .|..|++=
T Consensus 222 ~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~s-yd~~iklt 300 (350)
T KOG0641|consen 222 NDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCS-YDMKIKLT 300 (350)
T ss_pred CcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEec-ccceEEEe
Confidence 31 24799999999999999998 7899999999999999999999999999999999999997 79999999
Q ss_pred EcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECC
Q 007234 228 RTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (612)
Q Consensus 228 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~ 282 (612)
|+...-......+...+|....+.+-+. |..--+++.+.|+++.+|-+.
T Consensus 301 dlqgdla~el~~~vv~ehkdk~i~~rwh------~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 301 DLQGDLAHELPIMVVAEHKDKAIQCRWH------PQDFSFISSSADKTATLWALN 349 (350)
T ss_pred ecccchhhcCceEEEEeccCceEEEEec------CccceeeeccCcceEEEeccC
Confidence 9986533323345556677888877655 666778999999999999753
No 86
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.92 E-value=2.7e-23 Score=196.21 Aligned_cols=238 Identities=16% Similarity=0.221 Sum_probs=187.6
Q ss_pred CCcccceeEEEEc-CCC--CEEEEEeCCCcEEEEECCCCcEE----EEeeccCCccccccccccccccccccceeEEEee
Q 007234 2 GSSNIRDILTSFS-PAL--DYFAICSGDARIKIWDTLKGQVQ----TEFADIASTETTSLYGNRLEREHLSVDYTCMKWL 74 (612)
Q Consensus 2 ~s~~V~~l~~~fs-pdg--~~las~s~dg~i~iwd~~~~~~~----~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~ 74 (612)
++++|+++ ++- ++. ..|++++.|.++++|.++.++.. +.-+||...|.++....+
T Consensus 143 ht~~ik~v--~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~s---------------- 204 (423)
T KOG0313|consen 143 HTGPIKSV--AWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSS---------------- 204 (423)
T ss_pred CCcceeee--EEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCC----------------
Confidence 45677654 433 332 36999999999999998877643 233466666665555544
Q ss_pred ecccccccccCCcEEEEEECCCcEEEEEcCCC-------------------------eEEEEeccCCCCCeEEEEEecCC
Q 007234 75 SVDRKKKRKLGSSLLVLGTGGGDVLALAVSAG-------------------------QLKWRLSDCHPGGVSAISFATHG 129 (612)
Q Consensus 75 ~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~-------------------------~~~~~~~~~h~~~V~~l~~sp~~ 129 (612)
+..+++|+.|.+|.+|+..+. ..+ ..+.+|..+|.++.|++ .
T Consensus 205 -----------gtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~-vtl~GHt~~Vs~V~w~d-~ 271 (423)
T KOG0313|consen 205 -----------GTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPL-VTLEGHTEPVSSVVWSD-A 271 (423)
T ss_pred -----------CCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCce-EEecccccceeeEEEcC-C
Confidence 889999999999999993221 112 23479999999999998 5
Q ss_pred CEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCe---eEEEEecCCCCEEE
Q 007234 130 SCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHK---KMQKFSGHPGAVRF 204 (612)
Q Consensus 130 ~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~---~~~~~~~h~~~v~~ 204 (612)
..++++|.|.+|+.||+.+++.+.++.+ ...+.|+.++|..++|++|+ ..|++||.+++. ...+|.||.+.|.+
T Consensus 272 ~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVss 350 (423)
T KOG0313|consen 272 TVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSS 350 (423)
T ss_pred CceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhh
Confidence 6799999999999999999999988875 45789999999999999998 799999999763 46788999999999
Q ss_pred EEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEEC
Q 007234 205 MTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (612)
Q Consensus 205 l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~ 281 (612)
+.|+|...+.+.+++.|+++++||+++.+.. ++.+..+..-+-++.| .++..+++|+.|++|+++..
T Consensus 351 vkwsp~~~~~~~S~S~D~t~klWDvRS~k~p----lydI~~h~DKvl~vdW------~~~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 351 VKWSPTNEFQLVSGSYDNTVKLWDVRSTKAP----LYDIAGHNDKVLSVDW------NEGGLIVSGGADNKLRIFKG 417 (423)
T ss_pred eecCCCCceEEEEEecCCeEEEEEeccCCCc----ceeeccCCceEEEEec------cCCceEEeccCcceEEEecc
Confidence 9999988876666668999999999987633 4555555555556666 46789999999999999864
No 87
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=1.2e-23 Score=203.39 Aligned_cols=299 Identities=15% Similarity=0.147 Sum_probs=217.3
Q ss_pred cccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccc
Q 007234 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (612)
Q Consensus 4 ~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (612)
-+| +||+++||+++..+++.||+|.=|++.+|+....+-.. ..+....
T Consensus 143 ~s~--~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~-~ev~k~~----------------------------- 190 (479)
T KOG0299|consen 143 LSV--TSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIER-DEVLKSH----------------------------- 190 (479)
T ss_pred Ccc--eEEEeeccccceeecCCCcceeeeehhcCccccccccc-chhhhhc-----------------------------
Confidence 345 67899999999999999999999999999865322100 0000000
Q ss_pred cCCcEEEEEECCCcEEEEEcCCCeEEEEec-cCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCe
Q 007234 84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLS-DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI 162 (612)
Q Consensus 84 ~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~-~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v 162 (612)
+... +.. .+|...+.+++.++||++|++|+.|..|.+||.++.+.++.+++|.+.|
T Consensus 191 ----------------------~~~~-k~~r~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V 247 (479)
T KOG0299|consen 191 ----------------------GNPL-KESRKGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAV 247 (479)
T ss_pred ----------------------cCCC-CcccccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccce
Confidence 0000 111 3699999999999999999999999999999999999999999999999
Q ss_pred eEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceee
Q 007234 163 SCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV 240 (612)
Q Consensus 163 ~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~ 240 (612)
.+++|-.....+++++ .+|++|+++....+.++.||...|.+|....-++.+-+++ .|+++++|++......
T Consensus 248 ~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGg-rDrT~rlwKi~eesql----- 321 (479)
T KOG0299|consen 248 SSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGG-RDRTVRLWKIPEESQL----- 321 (479)
T ss_pred eeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhcccceEEecc-ccceeEEEecccccee-----
Confidence 9999987777777776 8999999999999999999999999998888777665555 7999999999554322
Q ss_pred EeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeE-----------eecccccCCCCcc
Q 007234 241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKIL-----------SSSEDVNSKSQKS 309 (612)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~-----------~~~~~~~s~~~~~ 309 (612)
.+..+...+.+++|- +..++++|+.+|.|.+|++.+.+.+......... +.......|...
T Consensus 322 -ifrg~~~sidcv~~I------n~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sd- 393 (479)
T KOG0299|consen 322 -IFRGGEGSIDCVAFI------NDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSD- 393 (479)
T ss_pred -eeeCCCCCeeeEEEe------cccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCc-
Confidence 233456677888884 5678999999999999999888776543322111 111111233433
Q ss_pred cchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceee
Q 007234 310 ATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (612)
Q Consensus 310 ~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~ 379 (612)
.+++|+.+|++++|. +..|......+..+. -.++|.+++|+++|+++++..+.....--|-.
T Consensus 394 ---L~asGS~~G~vrLW~----i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~~ 455 (479)
T KOG0299|consen 394 ---LLASGSWSGCVRLWK----IEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGIGKEHRLGRWWC 455 (479)
T ss_pred ---eEEecCCCCceEEEE----ecCCccccceeeecc-cccEEEEEEEccCCCEEEEecccccccceeeE
Confidence 778888888777764 222222222333444 34589999999999988566666655555543
No 88
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.92 E-value=3.3e-23 Score=220.09 Aligned_cols=244 Identities=18% Similarity=0.198 Sum_probs=192.8
Q ss_pred CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCC-------C-----------cEEEEeeccCCccccccccccccccc
Q 007234 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLK-------G-----------QVQTEFADIASTETTSLYGNRLEREH 63 (612)
Q Consensus 2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~-------~-----------~~~~~~~~~~~~~~~~~~s~~~~~~~ 63 (612)
+.+.|. |+.|||||++||+||.|+.|.||+... | ++...+.+|.+.|..+.|+++
T Consensus 68 h~~sv~--CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~----- 140 (942)
T KOG0973|consen 68 HDGSVN--CVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPD----- 140 (942)
T ss_pred ccCcee--EEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCC-----
Confidence 457784 559999999999999999999998763 1 144555556555555555444
Q ss_pred cccceeEEEeeecccccccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEE
Q 007234 64 LSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCE 143 (612)
Q Consensus 64 ~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~i 143 (612)
+.++++++.|+.|.|||..+.+.+..+ .+|.+.|-++.|.|-|++|++-+.|++|++
T Consensus 141 ----------------------~~~lvS~s~DnsViiwn~~tF~~~~vl-~~H~s~VKGvs~DP~Gky~ASqsdDrtikv 197 (942)
T KOG0973|consen 141 ----------------------DSLLVSVSLDNSVIIWNAKTFELLKVL-RGHQSLVKGVSWDPIGKYFASQSDDRTLKV 197 (942)
T ss_pred ----------------------ccEEEEecccceEEEEccccceeeeee-ecccccccceEECCccCeeeeecCCceEEE
Confidence 889999999999999999999777555 789999999999999999999999999999
Q ss_pred EECCCCceeEEEecCC------CCeeEEEECCCCCEEEEeC------CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeC-
Q 007234 144 IDPLTGSLLGKFRAST------KGISCMAVSSDGKMLATAA------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDN- 210 (612)
Q Consensus 144 wd~~~~~~~~~~~~~~------~~v~~l~~spdg~~l~~~~------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~- 210 (612)
|++.+....+.+..+. ..+..+.|+|||++|++.. .++.|.+-.+.+.-..|-||.+++.++.|+|.
T Consensus 198 wrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~l 277 (942)
T KOG0973|consen 198 WRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKL 277 (942)
T ss_pred EEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHH
Confidence 9988877777766543 2578899999999999876 38999998888888899999999999999972
Q ss_pred -----C---------cE-EEEEEcCCCeEEEEEcCCCccccceeeEeec-CCceeEEeEEecCCccCCCCcEEEEEecCC
Q 007234 211 -----G---------KY-VLSSAVGERYIALWRTDGVKKQSASCVLAME-HPAVFMDCRCIDNGGVDDAGLYVLAISETG 274 (612)
Q Consensus 211 -----~---------~~-l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg 274 (612)
. .| ++++|+.|++|.||.....++. +... -....+.-++|+ |||..|+++|.||
T Consensus 278 fe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl-----~vi~~lf~~SI~DmsWs-----pdG~~LfacS~DG 347 (942)
T KOG0973|consen 278 FERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPL-----FVIHNLFNKSIVDMSWS-----PDGFSLFACSLDG 347 (942)
T ss_pred hccccccCCccCCCcceEEEEEecCCccEEEEecCCCCch-----hhhhhhhcCceeeeeEc-----CCCCeEEEEecCC
Confidence 1 11 5555568999999998665543 2221 122233445565 9999999999999
Q ss_pred cEEEEECCCcc
Q 007234 275 VCYIWYGQNIE 285 (612)
Q Consensus 275 ~i~iwd~~~~~ 285 (612)
+|.++.++..+
T Consensus 348 tV~~i~Fee~E 358 (942)
T KOG0973|consen 348 TVALIHFEEKE 358 (942)
T ss_pred eEEEEEcchHH
Confidence 99999876543
No 89
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.2e-22 Score=178.73 Aligned_cols=297 Identities=15% Similarity=0.188 Sum_probs=219.7
Q ss_pred CcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccc
Q 007234 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (612)
Q Consensus 3 s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (612)
+++||++ +|.|.|.+.|.|++..+++|--.-.-...+ .+|......
T Consensus 32 sqairav--~fhp~g~lyavgsnskt~ric~yp~l~~~r-------------------~~hea~~~p------------- 77 (350)
T KOG0641|consen 32 SQAIRAV--AFHPAGGLYAVGSNSKTFRICAYPALIDLR-------------------HAHEAAKQP------------- 77 (350)
T ss_pred hhheeeE--EecCCCceEEeccCCceEEEEccccccCcc-------------------cccccccCC-------------
Confidence 5688877 999999999999999999886432111000 011110000
Q ss_pred ccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCce-----eEEEec
Q 007234 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL-----LGKFRA 157 (612)
Q Consensus 83 ~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~-----~~~~~~ 157 (612)
...+.+-.+.|.+.|.|.+|+|+|+++++|+.|.+|++..++...+ -..|.-
T Consensus 78 -----------------------p~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nm 134 (350)
T KOG0641|consen 78 -----------------------PSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNM 134 (350)
T ss_pred -----------------------CeEEeeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeee
Confidence 0011122256899999999999999999999999999987654322 235667
Q ss_pred CCCCeeEEEECC----CCCEEEEeC-C--eEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcC
Q 007234 158 STKGISCMAVSS----DGKMLATAA-G--QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD 230 (612)
Q Consensus 158 ~~~~v~~l~~sp----dg~~l~~~~-g--~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~ 230 (612)
|.+.|..++|-. .|.+|++++ | .|++-|..+|+.+..+.||.+.|.++ ++-+|..+++++ .|.+|++||++
T Consensus 135 hdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilal-yswn~~m~~sgs-qdktirfwdlr 212 (350)
T KOG0641|consen 135 HDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGS-QDKTIRFWDLR 212 (350)
T ss_pred cCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEE-EEecCcEEEccC-CCceEEEEeee
Confidence 889999999964 356788877 4 77888999999999999999999886 344577777775 89999999998
Q ss_pred CCccccceeeEeec-------CCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeeccccc
Q 007234 231 GVKKQSASCVLAME-------HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVN 303 (612)
Q Consensus 231 ~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 303 (612)
-.... ..+. -....+..++.. |.|++|++|-.|....+||++.++.++.+.|....+.+.. |
T Consensus 213 v~~~v-----~~l~~~~~~~glessavaav~vd-----psgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vr-f 281 (350)
T KOG0641|consen 213 VNSCV-----NTLDNDFHDGGLESSAVAAVAVD-----PSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVR-F 281 (350)
T ss_pred cccee-----eeccCcccCCCcccceeEEEEEC-----CCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEE-e
Confidence 76532 2222 123455666676 9999999999999999999999999999999887777766 8
Q ss_pred CCCCcccchhhhcccccceecCCCceEEEEeCCccCc-eEEEeeccCCCeEEEEecCCCceEeccccceeeecceee
Q 007234 304 SKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKP-SFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (612)
Q Consensus 304 s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~-~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~ 379 (612)
+|... ++++++.|..++.-| ..|..... ..-.+..|...++.+.|.|..--+ +|.|.|++..+|..
T Consensus 282 sp~a~----yllt~syd~~ikltd-----lqgdla~el~~~vv~ehkdk~i~~rwh~~d~sf-isssadkt~tlwa~ 348 (350)
T KOG0641|consen 282 SPGAH----YLLTCSYDMKIKLTD-----LQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSF-ISSSADKTATLWAL 348 (350)
T ss_pred CCCce----EEEEecccceEEEee-----cccchhhcCceEEEEeccCceEEEEecCcccee-eeccCcceEEEecc
Confidence 88877 899999887666544 22333221 122345688899999999988777 89999999999965
No 90
>PTZ00420 coronin; Provisional
Probab=99.91 E-value=5e-22 Score=209.51 Aligned_cols=179 Identities=10% Similarity=0.109 Sum_probs=142.7
Q ss_pred EECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecC-CCEEEEEecCCcEEEEECCCCc--------eeEEEecCCCCe
Q 007234 92 GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATH-GSCIYSAGADGMVCEIDPLTGS--------LLGKFRASTKGI 162 (612)
Q Consensus 92 gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~-~~~l~s~s~dg~v~iwd~~~~~--------~~~~~~~~~~~v 162 (612)
|+..|.|.+|++.....+..+ .+|.+.|.+++|+|+ +.+|++|+.||+|++||+.++. ++..+.+|...|
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L-~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V 128 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKL-KGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKI 128 (568)
T ss_pred CCceeEEEeeecCCCceEEEE-cCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcE
Confidence 455677999998877666555 689999999999996 7899999999999999997642 345678899999
Q ss_pred eEEEECCCCCEE-EEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCcccccee
Q 007234 163 SCMAVSSDGKML-ATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC 239 (612)
Q Consensus 163 ~~l~~spdg~~l-~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~ 239 (612)
.+++|+|++..+ ++++ ++|++||+++++.+..+. |...|.+++|+|+|.+|++++ .|+.|++||++++...
T Consensus 129 ~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s-~D~~IrIwD~Rsg~~i---- 202 (568)
T PTZ00420 129 SIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTC-VGKHMHIIDPRKQEIA---- 202 (568)
T ss_pred EEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEe-cCCEEEEEECCCCcEE----
Confidence 999999998765 5665 899999999998877776 667899999999999998887 7999999999987643
Q ss_pred eEeec-CCcee----EEeEEecCCccCCCCcEEEEEecCC----cEEEEECCC
Q 007234 240 VLAME-HPAVF----MDCRCIDNGGVDDAGLYVLAISETG----VCYIWYGQN 283 (612)
Q Consensus 240 ~~~~~-~~~~~----~~~~~~~~~~~~~~~~~l~t~s~dg----~i~iwd~~~ 283 (612)
..+. |.... +....|+ +++.+|++++.|+ +|++||+++
T Consensus 203 -~tl~gH~g~~~s~~v~~~~fs-----~d~~~IlTtG~d~~~~R~VkLWDlr~ 249 (568)
T PTZ00420 203 -SSFHIHDGGKNTKNIWIDGLG-----GDDNYILSTGFSKNNMREMKLWDLKN 249 (568)
T ss_pred -EEEecccCCceeEEEEeeeEc-----CCCCEEEEEEcCCCCccEEEEEECCC
Confidence 2333 33221 1122233 7888999988774 799999875
No 91
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=5.2e-24 Score=199.76 Aligned_cols=261 Identities=16% Similarity=0.170 Sum_probs=205.9
Q ss_pred cEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEEE
Q 007234 87 SLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMA 166 (612)
Q Consensus 87 ~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~ 166 (612)
..+++|+.||.|++||+.+..+...+ .+|.+.|.++++.. ..+++++.|.+|+.|-+.. .+++++.+ ...+..+.
T Consensus 80 s~~aSGs~DG~VkiWnlsqR~~~~~f-~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~-~p~~tilg-~s~~~gId 154 (433)
T KOG0268|consen 80 STVASGSCDGEVKIWNLSQRECIRTF-KAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG-PPLHTILG-KSVYLGID 154 (433)
T ss_pred hhhhccccCceEEEEehhhhhhhhee-ecccCceeeEEecc--cceEEecCCcceeeeeccC-Ccceeeec-cccccccc
Confidence 56899999999999999999998777 68999999999976 5689999999999999764 57777764 45677888
Q ss_pred ECCCCCEEEEeCCeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCC
Q 007234 167 VSSDGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP 246 (612)
Q Consensus 167 ~spdg~~l~~~~g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 246 (612)
-+..+..+++++..|.|||.+-..++..+.--...|.++.|+|....++.++..|+.|.+||++.+.+.. ..+..+
T Consensus 155 h~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~-KVi~~m--- 230 (433)
T KOG0268|consen 155 HHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLK-KVILTM--- 230 (433)
T ss_pred cccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccc-eeeeec---
Confidence 8877888999889999999999999999988888899999999877555555469999999999987652 222222
Q ss_pred ceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcc-eecccCCceeEeecccccCCCCcccchhhhcccccceecC
Q 007234 247 AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE-ELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKP 325 (612)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~ 325 (612)
-...++|+ |++--++++++|..++.||++..+ .+..++.....+...+ |+|.|+ -+++|++|..+++
T Consensus 231 --RTN~Iswn-----PeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVd-fsptG~----EfvsgsyDksIRI 298 (433)
T KOG0268|consen 231 --RTNTICWN-----PEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVD-FSPTGQ----EFVSGSYDKSIRI 298 (433)
T ss_pred --cccceecC-----ccccceeeccccccceehhhhhhcccchhhcccceeEEEec-cCCCcc----hhccccccceEEE
Confidence 22446676 888889999999999999987653 4455555555555555 899999 8999999988877
Q ss_pred CCceEEEEeCCccCceEEEeeccC---CCeEEEEecCCCceEeccccceeeecceee
Q 007234 326 ASVHTFVAYGLLLKPSFQKILVNS---GEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (612)
Q Consensus 326 ~~~~~~~~~g~~~~~~~~~~~~h~---~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~ 379 (612)
+. +..|.+ . -..|+ ..|.++.||.|.+|+ +|||+|+.+|+|..
T Consensus 299 f~----~~~~~S-R-----diYhtkRMq~V~~Vk~S~Dskyi-~SGSdd~nvRlWka 344 (433)
T KOG0268|consen 299 FP----VNHGHS-R-----DIYHTKRMQHVFCVKYSMDSKYI-ISGSDDGNVRLWKA 344 (433)
T ss_pred ee----cCCCcc-h-----hhhhHhhhheeeEEEEeccccEE-EecCCCcceeeeec
Confidence 54 111111 0 11222 358999999999999 99999999999975
No 92
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=6.8e-23 Score=188.84 Aligned_cols=276 Identities=12% Similarity=0.181 Sum_probs=216.3
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEE
Q 007234 12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL 91 (612)
Q Consensus 12 ~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~ 91 (612)
+-......+.+++.|.+.+||.+++|.|+..+.+|.+.++++.|.+. +.++++
T Consensus 155 aa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s---------------------------~~L~lT 207 (481)
T KOG0300|consen 155 AADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNS---------------------------GLLLLT 207 (481)
T ss_pred hhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccc---------------------------cceEEE
Confidence 44444457889999999999999999999999999999998888876 788899
Q ss_pred EECCCcEEEEE------cCCC----------------------------------eEEEEeccCCCCCeEEEEEecCCCE
Q 007234 92 GTGGGDVLALA------VSAG----------------------------------QLKWRLSDCHPGGVSAISFATHGSC 131 (612)
Q Consensus 92 gs~~g~I~vwd------~~~~----------------------------------~~~~~~~~~h~~~V~~l~~sp~~~~ 131 (612)
++.|++..||. +... ..+.. +.+|.+.|.+..|-..|+.
T Consensus 208 aSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~-ltgH~~vV~a~dWL~gg~Q 286 (481)
T KOG0300|consen 208 ASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMR-LTGHRAVVSACDWLAGGQQ 286 (481)
T ss_pred ccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeee-eeccccceEehhhhcCcce
Confidence 99999988886 2110 01112 2579999999999999999
Q ss_pred EEEEecCCcEEEEECCCCceeEEEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCC-eeEEEEecCCCCEEEEEEe
Q 007234 132 IYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDH-KKMQKFSGHPGAVRFMTFS 208 (612)
Q Consensus 132 l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~-~~~~~~~~h~~~v~~l~~s 208 (612)
+++++.|.+..+||+++|+.+..+.+|....+.++-+|..+++++++ .+.++||++.. ..+..|.||...|++..|.
T Consensus 287 ~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~ 366 (481)
T KOG0300|consen 287 MVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFN 366 (481)
T ss_pred eeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEe
Confidence 99999999999999999999999999999999999999999999998 79999999854 4578899999999999999
Q ss_pred eCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceec
Q 007234 209 DNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR 288 (612)
Q Consensus 209 p~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~ 288 (612)
.+.+ +++++ +|++|++||+++.... +.++.... .+.-+..+ ..+..++.-..+..|++||+.....-+
T Consensus 367 ~dd~-vVSgS-DDrTvKvWdLrNMRsp----lATIRtdS-~~NRvavs-----~g~~iIAiPhDNRqvRlfDlnG~RlaR 434 (481)
T KOG0300|consen 367 TDDR-VVSGS-DDRTVKVWDLRNMRSP----LATIRTDS-PANRVAVS-----KGHPIIAIPHDNRQVRLFDLNGNRLAR 434 (481)
T ss_pred cCCc-eeecC-CCceEEEeeeccccCc----ceeeecCC-ccceeEee-----cCCceEEeccCCceEEEEecCCCcccc
Confidence 8775 67776 7999999999886533 23332222 22334443 445566666667799999986443321
Q ss_pred ccCCceeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCC--ceEec
Q 007234 289 NTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDG--VLLPM 366 (612)
Q Consensus 289 ~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg--~~l~~ 366 (612)
.|.. .-++|...|.|++|..+- .-| +
T Consensus 435 ---------------lPrt------------------------------------sRqgHrRMV~c~AW~eehp~cnL-f 462 (481)
T KOG0300|consen 435 ---------------LPRT------------------------------------SRQGHRRMVTCCAWLEEHPACNL-F 462 (481)
T ss_pred ---------------CCcc------------------------------------cccccceeeeeeeccccCccccc-c
Confidence 0100 224677789999998664 456 8
Q ss_pred cccceeeecceee
Q 007234 367 SQSLLKSKRGRYV 379 (612)
Q Consensus 367 s~s~d~~~~~w~~ 379 (612)
+++.|..+.-|++
T Consensus 463 tcGFDR~v~gW~i 475 (481)
T KOG0300|consen 463 TCGFDRMVAGWKI 475 (481)
T ss_pred cccccceeeeeEe
Confidence 9999999999987
No 93
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=4.9e-23 Score=213.60 Aligned_cols=204 Identities=17% Similarity=0.183 Sum_probs=158.5
Q ss_pred cCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEEEECC-CCCEEEEeC--CeEEEEEcCCCe
Q 007234 114 DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSS-DGKMLATAA--GQLKTFNCSDHK 190 (612)
Q Consensus 114 ~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~sp-dg~~l~~~~--g~i~lwd~~~~~ 190 (612)
.||.+.|.++.|+.++ +|+++|.|.+|++|++...+++..|. |...|+|++|+| |.+++++|+ |.|+||++...+
T Consensus 366 ~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~ 443 (712)
T KOG0283|consen 366 KGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKK 443 (712)
T ss_pred hccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeecccccceEEeecCcCe
Confidence 4899999999999754 89999999999999999999999998 899999999999 889999999 999999998887
Q ss_pred eEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeec---CCceeEEeEEecCCccCCCCcEE
Q 007234 191 KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME---HPAVFMDCRCIDNGGVDDAGLYV 267 (612)
Q Consensus 191 ~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l 267 (612)
.+.-...+ .-|++++|.|||++.+.|+ .+|.+++|+....+......+.... ....-++.+.|.+ .+...|
T Consensus 444 Vv~W~Dl~-~lITAvcy~PdGk~avIGt-~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p----~~~~~v 517 (712)
T KOG0283|consen 444 VVDWNDLR-DLITAVCYSPDGKGAVIGT-FNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFP----GDPDEV 517 (712)
T ss_pred eEeehhhh-hhheeEEeccCCceEEEEE-eccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecC----CCCCeE
Confidence 76655444 7899999999999999988 6999999999887654211111110 1112445555542 233478
Q ss_pred EEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeec
Q 007234 268 LAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILV 347 (612)
Q Consensus 268 ~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~ 347 (612)
++.+.|..|+|||.++.+.+..+++...
T Consensus 518 LVTSnDSrIRI~d~~~~~lv~KfKG~~n---------------------------------------------------- 545 (712)
T KOG0283|consen 518 LVTSNDSRIRIYDGRDKDLVHKFKGFRN---------------------------------------------------- 545 (712)
T ss_pred EEecCCCceEEEeccchhhhhhhccccc----------------------------------------------------
Confidence 8889999999999877666543332100
Q ss_pred cCCCeEEEEecCCCceEeccccceeeecceee
Q 007234 348 NSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (612)
Q Consensus 348 h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~ 379 (612)
........|+.||+++ +++|+|..+.+|+.
T Consensus 546 -~~SQ~~Asfs~Dgk~I-Vs~seDs~VYiW~~ 575 (712)
T KOG0283|consen 546 -TSSQISASFSSDGKHI-VSASEDSWVYIWKN 575 (712)
T ss_pred -CCcceeeeEccCCCEE-EEeecCceEEEEeC
Confidence 0023455689999999 99999999999986
No 94
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.91 E-value=2.4e-23 Score=198.53 Aligned_cols=233 Identities=16% Similarity=0.217 Sum_probs=197.4
Q ss_pred cccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccc
Q 007234 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (612)
Q Consensus 4 ~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (612)
++|..+ .|.+++.++.+++.|+.+++|++.+++...++.+|.+.+++.-|...
T Consensus 220 g~it~~--d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~------------------------- 272 (459)
T KOG0288|consen 220 GNITSI--DFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLS------------------------- 272 (459)
T ss_pred CCccee--eecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhcc-------------------------
Confidence 568666 99999999999999999999999999999999999988876666554
Q ss_pred cCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCee
Q 007234 84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGIS 163 (612)
Q Consensus 84 ~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~ 163 (612)
...+++|+.|.+|++||+..+.|..+++. .+.+.++..+ ...+++|-.|++|++||.++..+......+. .|+
T Consensus 273 --~~~vVsgs~DRtiK~WDl~k~~C~kt~l~--~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vt 345 (459)
T KOG0288|consen 273 --HSRVVSGSADRTIKLWDLQKAYCSKTVLP--GSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVT 345 (459)
T ss_pred --ccceeeccccchhhhhhhhhhheeccccc--cccccceEec--ceeeeecccccceEEEeccCCceeeEeecCc-cee
Confidence 34489999999999999999999877764 3567777776 4568899999999999999999999988655 899
Q ss_pred EEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecC----CCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccc
Q 007234 164 CMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGH----PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA 237 (612)
Q Consensus 164 ~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h----~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~ 237 (612)
++..+++|..+.+.+ .++.+.|+++.+....+... ....+.+.|||++.|+++|+ .||.|+||++.+++..
T Consensus 346 Sl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS-~dgsv~iW~v~tgKlE-- 422 (459)
T KOG0288|consen 346 SLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGS-ADGSVYIWSVFTGKLE-- 422 (459)
T ss_pred eEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeecc-CCCcEEEEEccCceEE--
Confidence 999999999999888 89999999999887776532 23478899999999999987 6999999999999865
Q ss_pred eeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEE
Q 007234 238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIW 279 (612)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iw 279 (612)
.+....+....+.++.|+ |.|..+++++.++.+.+|
T Consensus 423 -~~l~~s~s~~aI~s~~W~-----~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 423 -KVLSLSTSNAAITSLSWN-----PSGSGLLSADKQKAVTLW 458 (459)
T ss_pred -EEeccCCCCcceEEEEEc-----CCCchhhcccCCcceEec
Confidence 333434444467788887 999999999999999999
No 95
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=4.6e-22 Score=182.71 Aligned_cols=246 Identities=15% Similarity=0.192 Sum_probs=175.4
Q ss_pred cccceeEEEEcC-CCCEEEEEeCCCcEEEEECCC-CcEEE-EeeccCCccccccccccccccccccceeEEEeeeccccc
Q 007234 4 SNIRDILTSFSP-ALDYFAICSGDARIKIWDTLK-GQVQT-EFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (612)
Q Consensus 4 ~~V~~l~~~fsp-dg~~las~s~dg~i~iwd~~~-~~~~~-~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~ 80 (612)
..|..| +||| ...+++.+|.||+||+|+++. |..+. ....|.+++.+++|+.+
T Consensus 28 DsIS~l--~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsdd---------------------- 83 (347)
T KOG0647|consen 28 DSISAL--AFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDD---------------------- 83 (347)
T ss_pred cchhee--EeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccC----------------------
Confidence 356556 9999 556777889999999999986 34332 22334444444444444
Q ss_pred ccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCC--EEEEEecCCcEEEEECCCCceeEEEecC
Q 007234 81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS--CIYSAGADGMVCEIDPLTGSLLGKFRAS 158 (612)
Q Consensus 81 ~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~--~l~s~s~dg~v~iwd~~~~~~~~~~~~~ 158 (612)
+..+++|+.|+.+++||+.+++.. ++ ..|.++|..+.|-+... .|+|||.|++|+.||++...++.++.-
T Consensus 84 -----gskVf~g~~Dk~~k~wDL~S~Q~~-~v-~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L- 155 (347)
T KOG0647|consen 84 -----GSKVFSGGCDKQAKLWDLASGQVS-QV-AAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL- 155 (347)
T ss_pred -----CceEEeeccCCceEEEEccCCCee-ee-eecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec-
Confidence 788999999999999999999765 33 56999999999987655 699999999999999999999988874
Q ss_pred CCCeeEEEECCCCCEEEEeCCeEEEEEcCCCeeEEE-E-ecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccc-
Q 007234 159 TKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQK-F-SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ- 235 (612)
Q Consensus 159 ~~~v~~l~~spdg~~l~~~~g~i~lwd~~~~~~~~~-~-~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~- 235 (612)
.+.++++..-..--.++++...|.+|+++++....+ . ..-.-.+.+++..+|....+.++ -.|.+.+..++.+...
T Consensus 156 PeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGs-iEGrv~iq~id~~~~~~ 234 (347)
T KOG0647|consen 156 PERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGS-IEGRVAIQYIDDPNPKD 234 (347)
T ss_pred cceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeee-ecceEEEEecCCCCccC
Confidence 456777766543333333448999999987643211 1 11233578898888887778777 6899999998876332
Q ss_pred --cceeeEee---cCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCccee
Q 007234 236 --SASCVLAM---EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL 287 (612)
Q Consensus 236 --~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~ 287 (612)
...|.... ......+..++|. |.-..|++++.||+..+||-+....+
T Consensus 235 nFtFkCHR~~~~~~~~VYaVNsi~Fh-----P~hgtlvTaGsDGtf~FWDkdar~kL 286 (347)
T KOG0647|consen 235 NFTFKCHRSTNSVNDDVYAVNSIAFH-----PVHGTLVTAGSDGTFSFWDKDARTKL 286 (347)
T ss_pred ceeEEEeccCCCCCCceEEecceEee-----cccceEEEecCCceEEEecchhhhhh
Confidence 11222211 1113455666776 88899999999999999996544433
No 96
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=2e-22 Score=195.35 Aligned_cols=281 Identities=17% Similarity=0.183 Sum_probs=209.4
Q ss_pred EEeCC-CcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEECCCc-EE
Q 007234 22 ICSGD-ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGD-VL 99 (612)
Q Consensus 22 s~s~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~-I~ 99 (612)
+++.| .++.+||+++|....+|++..... ++ ..+. .++.+++++..... +.
T Consensus 12 ssS~d~~~~~~~dl~TGt~~~~ykg~~~a~-----------~~---sl~~-------------l~~~yllsaq~~rp~l~ 64 (476)
T KOG0646|consen 12 SSSFDPINCIVWDLRTGTSLLQYKGSYLAQ-----------AA---SLTA-------------LNNEYLLSAQLKRPLLH 64 (476)
T ss_pred ccCCCCcceeEEecCCCceeEEecCccccc-----------ch---hhhh-------------hchhheeeecccCcccc
Confidence 33444 459999999999999887531100 00 0000 01456666665544 89
Q ss_pred EEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEEEECCCCCEEEEeC-
Q 007234 100 ALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA- 178 (612)
Q Consensus 100 vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~- 178 (612)
+|.+.......+. .--.++|.++.-+|+|.+|+.|+..|.+++|.+.+|..+..+.+|-..|+|+.|+-||.++++|+
T Consensus 65 vw~i~k~~~~~q~-~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgsk 143 (476)
T KOG0646|consen 65 VWEILKKDQVVQY-IVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSK 143 (476)
T ss_pred ccccCchhhhhhh-cccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCC
Confidence 9998765544322 22467899999999999888888999999999999999999999999999999999999999999
Q ss_pred -CeEEEEEcC---------CCeeEEEEecCCCCEEEEEEeeC--CcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCC
Q 007234 179 -GQLKTFNCS---------DHKKMQKFSGHPGAVRFMTFSDN--GKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP 246 (612)
Q Consensus 179 -g~i~lwd~~---------~~~~~~~~~~h~~~v~~l~~sp~--~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 246 (612)
|.|.+|++. +-+++..|..|.-+|+.+...+. ..++++++ .|+++++||+..+... .+...+
T Consensus 144 Dg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS-~D~t~k~wdlS~g~LL-----lti~fp 217 (476)
T KOG0646|consen 144 DGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTAS-EDRTIKLWDLSLGVLL-----LTITFP 217 (476)
T ss_pred CccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEec-CCceEEEEEeccceee-----EEEecC
Confidence 999999863 34678899999999999988764 35788887 7999999999999754 333223
Q ss_pred ceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhcccccceecCC
Q 007234 247 AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPA 326 (612)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~ 326 (612)
..+.++..+ |.++.+++|+.+|.|.+.++......+. +-+
T Consensus 218 -~si~av~lD-----pae~~~yiGt~~G~I~~~~~~~~~~~~~----------------~v~------------------ 257 (476)
T KOG0646|consen 218 -SSIKAVALD-----PAERVVYIGTEEGKIFQNLLFKLSGQSA----------------GVN------------------ 257 (476)
T ss_pred -CcceeEEEc-----ccccEEEecCCcceEEeeehhcCCcccc----------------ccc------------------
Confidence 344566666 8899999999999999987644321000 000
Q ss_pred CceEEEEeCCccCceEEEeeccCC--CeEEEEecCCCceEeccccceeeecceeeecc
Q 007234 327 SVHTFVAYGLLLKPSFQKILVNSG--EDINLNCSQDGVLLPMSQSLLKSKRGRYVQNR 382 (612)
Q Consensus 327 ~~~~~~~~g~~~~~~~~~~~~h~~--~v~~l~~S~dg~~l~~s~s~d~~~~~w~~~~~ 382 (612)
...+..-...+..+.+|.+ .|+|+++|-||.+| +||+.|+.+++|++.++
T Consensus 258 -----~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlL-lSGd~dg~VcvWdi~S~ 309 (476)
T KOG0646|consen 258 -----QKGRHEENTQINVLVGHENESAITCLAISTDGTLL-LSGDEDGKVCVWDIYSK 309 (476)
T ss_pred -----ccccccccceeeeeccccCCcceeEEEEecCccEE-EeeCCCCCEEEEecchH
Confidence 0000111233446778888 89999999999999 99999999999999765
No 97
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=7.7e-22 Score=183.02 Aligned_cols=241 Identities=13% Similarity=0.173 Sum_probs=187.5
Q ss_pred CCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEEEECCCCCEEEEeC----CeEEEEEcCCCe
Q 007234 115 CHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA----GQLKTFNCSDHK 190 (612)
Q Consensus 115 ~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~----g~i~lwd~~~~~ 190 (612)
.....|.++.|+++|..+++++.|.++++||..++++++++..++.++..++|......++.++ .+|+..++.+.+
T Consensus 12 ~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNk 91 (311)
T KOG1446|consen 12 ETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNK 91 (311)
T ss_pred cCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCc
Confidence 3567899999999999999999999999999999999999998888999999987777777666 499999999999
Q ss_pred eEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEE
Q 007234 191 KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAI 270 (612)
Q Consensus 191 ~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~ 270 (612)
.++-|.||...|.+++.+|-+..+++++ .|++|++||++..+.+ -.+..... .+++|. |+|-++|++
T Consensus 92 ylRYF~GH~~~V~sL~~sP~~d~FlS~S-~D~tvrLWDlR~~~cq-----g~l~~~~~--pi~AfD-----p~GLifA~~ 158 (311)
T KOG1446|consen 92 YLRYFPGHKKRVNSLSVSPKDDTFLSSS-LDKTVRLWDLRVKKCQ-----GLLNLSGR--PIAAFD-----PEGLIFALA 158 (311)
T ss_pred eEEEcCCCCceEEEEEecCCCCeEEecc-cCCeEEeeEecCCCCc-----eEEecCCC--cceeEC-----CCCcEEEEe
Confidence 9999999999999999999999999987 7999999999977644 22222222 345676 999999999
Q ss_pred ecCCcEEEEECCCcce--ecccC---CceeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEe
Q 007234 271 SETGVCYIWYGQNIEE--LRNTK---ATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKI 345 (612)
Q Consensus 271 s~dg~i~iwd~~~~~~--~~~~~---~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~ 345 (612)
...+.|++||++.... ...+. +....+. ...|+++|| .|+.+...+.+++.| ..+|. ..+++
T Consensus 159 ~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~-~l~FS~dGK----~iLlsT~~s~~~~lD----Af~G~----~~~tf 225 (311)
T KOG1446|consen 159 NGSELIKLYDLRSFDKGPFTTFSITDNDEAEWT-DLEFSPDGK----SILLSTNASFIYLLD----AFDGT----VKSTF 225 (311)
T ss_pred cCCCeEEEEEecccCCCCceeEccCCCCcccee-eeEEcCCCC----EEEEEeCCCcEEEEE----ccCCc----EeeeE
Confidence 9888999999876532 11111 2233333 234899999 777776655443322 11222 34456
Q ss_pred eccCCC---eEEEEecCCCceEeccccceeeecceeeecc
Q 007234 346 LVNSGE---DINLNCSQDGVLLPMSQSLLKSKRGRYVQNR 382 (612)
Q Consensus 346 ~~h~~~---v~~l~~S~dg~~l~~s~s~d~~~~~w~~~~~ 382 (612)
.++.+. -...+|+|||+++ ++|+.|+++.+|++...
T Consensus 226 s~~~~~~~~~~~a~ftPds~Fv-l~gs~dg~i~vw~~~tg 264 (311)
T KOG1446|consen 226 SGYPNAGNLPLSATFTPDSKFV-LSGSDDGTIHVWNLETG 264 (311)
T ss_pred eeccCCCCcceeEEECCCCcEE-EEecCCCcEEEEEcCCC
Confidence 665543 3678899999999 99999999999998543
No 98
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.90 E-value=5.1e-22 Score=200.86 Aligned_cols=233 Identities=20% Similarity=0.300 Sum_probs=183.8
Q ss_pred CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEE--EeeccCCccccccccccccccccccceeEEEeeecccc
Q 007234 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQT--EFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK 79 (612)
Q Consensus 2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~ 79 (612)
|.++|+.+ ++.+ +..++++|.||++++|+-..++.+. .+.++.+-+ ...+++...+
T Consensus 13 H~~DVr~v--~~~~-~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i-----------------~~~i~y~e~~-- 70 (745)
T KOG0301|consen 13 HKSDVRAV--AVTD-GVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFI-----------------ANSICYAESD-- 70 (745)
T ss_pred Cccchhee--EecC-CeEEeecCCCCceeeeeccCcccccceecccCccee-----------------eccceecccc--
Confidence 56788777 5555 4488999999999999987666543 233332222 2223333322
Q ss_pred cccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCC
Q 007234 80 KKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST 159 (612)
Q Consensus 80 ~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~ 159 (612)
+..+++|+.|+.|.+|.+.+...+..+ .+|.+.|.+++...++. +++||.|.++++|-. +++...+.+|.
T Consensus 71 ------~~~l~~g~~D~~i~v~~~~~~~P~~~L-kgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~ 140 (745)
T KOG0301|consen 71 ------KGRLVVGGMDTTIIVFKLSQAEPLYTL-KGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHT 140 (745)
T ss_pred ------CcceEeecccceEEEEecCCCCchhhh-hccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcc
Confidence 567999999999999999999998666 68999999999877775 999999999999975 77788899999
Q ss_pred CCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccc
Q 007234 160 KGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA 237 (612)
Q Consensus 160 ~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~ 237 (612)
..|++++.-|++ .+++|+ .+|++|.- ++.+++|.||..-|..+++-|++. |++++ .||.|+.|++...
T Consensus 141 asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~-flScs-NDg~Ir~w~~~ge----- 210 (745)
T KOG0301|consen 141 ASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSH-FLSCS-NDGSIRLWDLDGE----- 210 (745)
T ss_pred hheeeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCC-eEeec-CCceEEEEeccCc-----
Confidence 999999999998 666666 79999974 788999999999999999999864 67887 8999999999444
Q ss_pred eeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECC
Q 007234 238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (612)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~ 282 (612)
++.....+...+-++... .++..++++++|+++++|+..
T Consensus 211 -~l~~~~ghtn~vYsis~~-----~~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 211 -VLLEMHGHTNFVYSISMA-----LSDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred -eeeeeeccceEEEEEEec-----CCCCeEEEecCCceEEEeecC
Confidence 345555555555555544 778899999999999999865
No 99
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=6.8e-23 Score=209.45 Aligned_cols=241 Identities=13% Similarity=0.224 Sum_probs=182.7
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEE
Q 007234 11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV 90 (612)
Q Consensus 11 ~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~ 90 (612)
++..++-..++.++.. .++||.+.............. ........+..+.|.... .++|+
T Consensus 45 Is~nr~~~qiv~AGrs-~lklyai~~~~~~~~~~~~~k-----------~kqn~~~S~~DVkW~~~~--------~NlIA 104 (839)
T KOG0269|consen 45 ISVNRDINQIVVAGRS-LLKLYAINPNDFSEKCNHRFK-----------TKQNKFYSAADVKWGQLY--------SNLIA 104 (839)
T ss_pred EeecCCcceeEEeccc-ceeeEeeCcccCCcceeeecc-----------cccceeeehhhcccccch--------hhhhe
Confidence 3777888888888764 677876654322111100000 012223344567787554 78999
Q ss_pred EEECCCcEEEEEcCC---CeEEEEeccCCCCCeEEEEEecC-CCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEEE
Q 007234 91 LGTGGGDVLALAVSA---GQLKWRLSDCHPGGVSAISFATH-GSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMA 166 (612)
Q Consensus 91 ~gs~~g~I~vwd~~~---~~~~~~~~~~h~~~V~~l~~sp~-~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~ 166 (612)
+++.+|.|.+||+.. ++.+ ..+..|+..++++.|++. ..+|++||.||+|++||++..+...++.+....|..++
T Consensus 105 T~s~nG~i~vWdlnk~~rnk~l-~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~ 183 (839)
T KOG0269|consen 105 TCSTNGVISVWDLNKSIRNKLL-TVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVK 183 (839)
T ss_pred eecCCCcEEEEecCccccchhh-hHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhcee
Confidence 999999999999987 3343 344679999999999984 45799999999999999999999999998888999999
Q ss_pred ECC-CCCEEEEeC--CeEEEEEcCCC-eeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEe
Q 007234 167 VSS-DGKMLATAA--GQLKTFNCSDH-KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLA 242 (612)
Q Consensus 167 ~sp-dg~~l~~~~--g~i~lwd~~~~-~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~ 242 (612)
|+| .+..++++. |.+++||++.. ++..++..|.++|.++.|+|++.+|++|| .|+.|+|||+.+.+... ..+
T Consensus 184 fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGG-RDK~vkiWd~t~~~~~~---~~t 259 (839)
T KOG0269|consen 184 FSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGG-RDKMVKIWDMTDSRAKP---KHT 259 (839)
T ss_pred eccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecC-CCccEEEEeccCCCccc---eeE
Confidence 998 566777776 99999999875 55788899999999999999999999998 89999999999876542 222
Q ss_pred ecCCceeEEeEEecCCccCCCC-cEEEEEec--CCcEEEEECC
Q 007234 243 MEHPAVFMDCRCIDNGGVDDAG-LYVLAISE--TGVCYIWYGQ 282 (612)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~-~~l~t~s~--dg~i~iwd~~ 282 (612)
+ +....+..+.|. |+. .+|++++. |-.|+|||+.
T Consensus 260 I-nTiapv~rVkWR-----P~~~~hLAtcsmv~dtsV~VWDvr 296 (839)
T KOG0269|consen 260 I-NTIAPVGRVKWR-----PARSYHLATCSMVVDTSVHVWDVR 296 (839)
T ss_pred E-eecceeeeeeec-----cCccchhhhhhccccceEEEEeec
Confidence 2 344556677776 543 56777765 7799999975
No 100
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=1.1e-21 Score=181.35 Aligned_cols=223 Identities=14% Similarity=0.171 Sum_probs=177.8
Q ss_pred CcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCC--EEEEEecCCcEEEEECCCCceeEEEecCCCCee
Q 007234 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS--CIYSAGADGMVCEIDPLTGSLLGKFRASTKGIS 163 (612)
Q Consensus 86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~--~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~ 163 (612)
+.++++|+.|.+|+|||+.....+..+. .|.+.|+++.|.+.-. .|++|+.||.|.+|+.....++.++++|.+.|+
T Consensus 53 ~~~~aSGssDetI~IYDm~k~~qlg~ll-~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt 131 (362)
T KOG0294|consen 53 GPYVASGSSDETIHIYDMRKRKQLGILL-SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVT 131 (362)
T ss_pred ceeEeccCCCCcEEEEeccchhhhccee-ccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccc
Confidence 7789999999999999999998887775 5999999999998664 799999999999999999999999999999999
Q ss_pred EEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeE
Q 007234 164 CMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVL 241 (612)
Q Consensus 164 ~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~ 241 (612)
.++.+|.|++.++.+ +.+++||+-+|+.-..+.- ....+.+.|+|.|.+++.++ ...|-+|.++..+.. .
T Consensus 132 ~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L-~~~at~v~w~~~Gd~F~v~~--~~~i~i~q~d~A~v~-----~ 203 (362)
T KOG0294|consen 132 DLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNL-KNKATLVSWSPQGDHFVVSG--RNKIDIYQLDNASVF-----R 203 (362)
T ss_pred eeEecCCCceEEEEcCCceeeeehhhcCccceeecc-CCcceeeEEcCCCCEEEEEe--ccEEEEEecccHhHh-----h
Confidence 999999999988766 8999999998876444432 22234489999999888876 456999999887533 2
Q ss_pred eecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhcccccc
Q 007234 242 AMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQD 321 (612)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~ 321 (612)
....+.. +.++.| -++..+++|..|+.|.+||..+...+.
T Consensus 204 ~i~~~~r-~l~~~~------l~~~~L~vG~d~~~i~~~D~ds~~~~~--------------------------------- 243 (362)
T KOG0294|consen 204 EIENPKR-ILCATF------LDGSELLVGGDNEWISLKDTDSDTPLT--------------------------------- 243 (362)
T ss_pred hhhcccc-ceeeee------cCCceEEEecCCceEEEeccCCCccce---------------------------------
Confidence 2223322 334445 467899999999999999976533211
Q ss_pred eecCCCceEEEEeCCccCceEEEeeccCCCeEEEE--ecCCCceEeccccceeeecceeee
Q 007234 322 IVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLN--CSQDGVLLPMSQSLLKSKRGRYVQ 380 (612)
Q Consensus 322 ~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~--~S~dg~~l~~s~s~d~~~~~w~~~ 380 (612)
.+..|...|-.+. -.|++.+| +|+|.||.|++|++.
T Consensus 244 ----------------------~~~AH~~RVK~i~~~~~~~~~~l-vTaSSDG~I~vWd~~ 281 (362)
T KOG0294|consen 244 ----------------------EFLAHENRVKDIASYTNPEHEYL-VTASSDGFIKVWDID 281 (362)
T ss_pred ----------------------eeecchhheeeeEEEecCCceEE-EEeccCceEEEEEcc
Confidence 3445666666665 34778888 999999999999973
No 101
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.90 E-value=1.9e-21 Score=175.21 Aligned_cols=235 Identities=15% Similarity=0.256 Sum_probs=193.4
Q ss_pred CcccceeEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234 3 SSNIRDILTSFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (612)
Q Consensus 3 s~~V~~l~~~fsp-dg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (612)
.+.|..+ +|+| ....||+++.|.+|++||.+++++........ ...-+.|.|.
T Consensus 64 ~~svdql--~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~-------------------eni~i~wsp~----- 117 (313)
T KOG1407|consen 64 TDSVDQL--CWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKG-------------------ENINITWSPD----- 117 (313)
T ss_pred Ccchhhh--eeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccC-------------------cceEEEEcCC-----
Confidence 4566667 7777 55789999999999999999999998775322 2334556665
Q ss_pred cccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCC
Q 007234 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG 161 (612)
Q Consensus 82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~ 161 (612)
+.+++++..+..|...|.++.+...... ..-.+..++|+-++.+|+.....|+|.|.....-+++..+++|...
T Consensus 118 ----g~~~~~~~kdD~it~id~r~~~~~~~~~--~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~sn 191 (313)
T KOG1407|consen 118 ----GEYIAVGNKDDRITFIDARTYKIVNEEQ--FKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSN 191 (313)
T ss_pred ----CCEEEEecCcccEEEEEecccceeehhc--ccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcc
Confidence 8899999999999999999888765542 4456888999988888888778899999999999999999999999
Q ss_pred eeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCcccccee
Q 007234 162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC 239 (612)
Q Consensus 162 v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~ 239 (612)
+.||.|+|+|+++|+|+ ..+.+||++..-+++.+..+.-||..+.|+.||++|++++ +|..|-|=++++|...
T Consensus 192 CicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaS-EDh~IDIA~vetGd~~---- 266 (313)
T KOG1407|consen 192 CICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASAS-EDHFIDIAEVETGDRV---- 266 (313)
T ss_pred eEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccC-ccceEEeEecccCCeE----
Confidence 99999999999999999 7999999999999999999999999999999999999987 8999999999999744
Q ss_pred eEeecCCceeEEeEEecCCccCCCCcEEEEEecC---------CcEEEEEC
Q 007234 240 VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET---------GVCYIWYG 281 (612)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~d---------g~i~iwd~ 281 (612)
..+.+..... .++|. |...+|+-++.| |.+++|-+
T Consensus 267 -~eI~~~~~t~-tVAWH-----Pk~~LLAyA~ddk~~d~~reag~vKiFG~ 310 (313)
T KOG1407|consen 267 -WEIPCEGPTF-TVAWH-----PKRPLLAYACDDKDGDSNREAGTVKIFGL 310 (313)
T ss_pred -EEeeccCCce-eEEec-----CCCceeeEEecCCCCccccccceeEEecC
Confidence 4444444443 35555 888888877654 45666644
No 102
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.90 E-value=3.4e-22 Score=193.33 Aligned_cols=236 Identities=16% Similarity=0.219 Sum_probs=190.7
Q ss_pred cccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccc
Q 007234 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (612)
Q Consensus 4 ~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (612)
+.| ++++.||||+|||+|+.|..|.||+.++++.++.|++|.+.|.+++|...
T Consensus 203 kei--l~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~g------------------------- 255 (479)
T KOG0299|consen 203 KEI--LTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKG------------------------- 255 (479)
T ss_pred cee--EEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecC-------------------------
Confidence 445 78899999999999999999999999999999999999999998888776
Q ss_pred cCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCee
Q 007234 84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGIS 163 (612)
Q Consensus 84 ~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~ 163 (612)
...+++++.|..|++|++.....+.++ .+|.+.|.++....-++.+-+|+.|+++++|++ ..+....+.++.+.+.
T Consensus 256 --t~~lys~s~Drsvkvw~~~~~s~vetl-yGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi-~eesqlifrg~~~sid 331 (479)
T KOG0299|consen 256 --TSELYSASADRSVKVWSIDQLSYVETL-YGHQDGVLGIDALSRERCVTVGGRDRTVRLWKI-PEESQLIFRGGEGSID 331 (479)
T ss_pred --ccceeeeecCCceEEEehhHhHHHHHH-hCCccceeeechhcccceEEeccccceeEEEec-cccceeeeeCCCCCee
Confidence 677999999999999999988887665 589999999998887877777779999999999 3444456788888999
Q ss_pred EEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEe-cC-----------CCCEEEEEEeeCCcEEEEEEcCCCeEEEEEc
Q 007234 164 CMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS-GH-----------PGAVRFMTFSDNGKYVLSSAVGERYIALWRT 229 (612)
Q Consensus 164 ~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~-~h-----------~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~ 229 (612)
|++|-.+ .++++|+ |.|.+|++...+++.... .| +..|++++..|....+++++ ++|.|++|.+
T Consensus 332 cv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS-~~G~vrLW~i 409 (479)
T KOG0299|consen 332 CVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGS-WSGCVRLWKI 409 (479)
T ss_pred eEEEecc-cceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecC-CCCceEEEEe
Confidence 9999854 5677777 999999999888876552 11 23789999999998888876 8999999999
Q ss_pred CCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEE-ecCCcEEEE
Q 007234 230 DGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAI-SETGVCYIW 279 (612)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~-s~dg~i~iw 279 (612)
..+-.. ...++.+. -..+++.++|+ ++|+++++| +....+-=|
T Consensus 410 ~~g~r~-i~~l~~ls-~~GfVNsl~f~-----~sgk~ivagiGkEhRlGRW 453 (479)
T KOG0299|consen 410 EDGLRA-INLLYSLS-LVGFVNSLAFS-----NSGKRIVAGIGKEHRLGRW 453 (479)
T ss_pred cCCccc-cceeeecc-cccEEEEEEEc-----cCCCEEEEeccccccccee
Confidence 887332 12344444 45567778887 888876666 445444444
No 103
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.89 E-value=1.4e-22 Score=186.28 Aligned_cols=240 Identities=16% Similarity=0.280 Sum_probs=191.7
Q ss_pred CcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeec--cCCccccccccccccccccccceeEEEeeeccccc
Q 007234 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFAD--IASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (612)
Q Consensus 3 s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~ 80 (612)
..+|+.| .|+|....|++|+.|++|++||...-...+-++. ...++.++.|.+.
T Consensus 172 ~devn~l--~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPs---------------------- 227 (430)
T KOG0640|consen 172 VDEVNDL--DFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPS---------------------- 227 (430)
T ss_pred cCcccce--eecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCC----------------------
Confidence 4678777 9999999999999999999999975544333322 1223333444433
Q ss_pred ccccCCcEEEEEECCCcEEEEEcCCCeEEEEec--cCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEec-
Q 007234 81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLS--DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA- 157 (612)
Q Consensus 81 ~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~--~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~- 157 (612)
|.++++|+.-..+++||+++.++..... .+|++.|+++.+++.|+..++||.||.|++||--+++++.++..
T Consensus 228 -----GefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~A 302 (430)
T KOG0640|consen 228 -----GEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNA 302 (430)
T ss_pred -----CceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhh
Confidence 8999999999999999999999865443 57999999999999999999999999999999999999998854
Q ss_pred CCC-CeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCC-----CCEEEEEEeeCCcEEEEEEcCCCeEEEEEc
Q 007234 158 STK-GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHP-----GAVRFMTFSDNGKYVLSSAVGERYIALWRT 229 (612)
Q Consensus 158 ~~~-~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~-----~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~ 229 (612)
|.+ .|.+..|..+|+++++.+ ..+++|.+.+++++.++.|-. .--+...|+....|++.-....+.+.-||.
T Consensus 303 H~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWda 382 (430)
T KOG0640|consen 303 HGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDA 382 (430)
T ss_pred cCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccc
Confidence 443 899999999999999988 799999999999999887541 122345788888888876555678999999
Q ss_pred CCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEE
Q 007234 230 DGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY 280 (612)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd 280 (612)
++.... ....+.|... +..+..+ |.+.-+++++.|-.+++|-
T Consensus 383 Rtadr~---~l~slgHn~a-~R~i~HS-----P~~p~FmTcsdD~raRFWy 424 (430)
T KOG0640|consen 383 RTADRV---ALLSLGHNGA-VRWIVHS-----PVEPAFMTCSDDFRARFWY 424 (430)
T ss_pred cchhhh---hhcccCCCCC-ceEEEeC-----CCCCceeeecccceeeeee
Confidence 998755 3455555554 4555565 8899999999999999995
No 104
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.89 E-value=1.9e-20 Score=188.10 Aligned_cols=269 Identities=17% Similarity=0.158 Sum_probs=190.3
Q ss_pred CCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEE-EEEECC
Q 007234 17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL-VLGTGG 95 (612)
Q Consensus 17 g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l-~~gs~~ 95 (612)
+..+++++.||.|++||..+++.+..+..+.. +. ++.|.+. +..+ ++++.+
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~------------------~l~~~~d---------g~~l~~~~~~~ 52 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PR------------------GITLSKD---------GKLLYVCASDS 52 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCCC-CC------------------ceEECCC---------CCEEEEEECCC
Confidence 35788999999999999999998888764322 22 2344332 5544 566778
Q ss_pred CcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEE-ecCCcEEEEECCCCceeEEEecCCCCeeEEEECCCCCEE
Q 007234 96 GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSA-GADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKML 174 (612)
Q Consensus 96 g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~-s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l 174 (612)
+.|++||+.+++....+. .+. .+..++|+|+++.++++ +.|+.|++||+.+++.+..+.. ...+.+++|+|+|+++
T Consensus 53 ~~v~~~d~~~~~~~~~~~-~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l 129 (300)
T TIGR03866 53 DTIQVIDLATGEVIGTLP-SGP-DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIV 129 (300)
T ss_pred CeEEEEECCCCcEEEecc-CCC-CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEE
Confidence 899999999998876553 233 35788999999977655 5689999999999888777763 3346889999999999
Q ss_pred EEeC---CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCC-----
Q 007234 175 ATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP----- 246 (612)
Q Consensus 175 ~~~~---g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~----- 246 (612)
+++. ..+.+||.++++....+.. ...+.++.|+|+++++++++..++.|.+||+.+++... .......
T Consensus 130 ~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~---~~~~~~~~~~~~ 205 (300)
T TIGR03866 130 VNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIK---KITFEIPGVHPE 205 (300)
T ss_pred EEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeee---eeeecccccccc
Confidence 9887 3578889998877665543 33457899999999887665468999999999876431 1111110
Q ss_pred ceeEEeEEecCCccCCCCcEEEEE-ecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhcccccceecC
Q 007234 247 AVFMDCRCIDNGGVDDAGLYVLAI-SETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKP 325 (612)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~t~-s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~ 325 (612)
......+.++ |++++++++ +.++.+.+||.++++.+...
T Consensus 206 ~~~~~~i~~s-----~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~----------------------------------- 245 (300)
T TIGR03866 206 AVQPVGIKLT-----KDGKTAFVALGPANRVAVVDAKTYEVLDYL----------------------------------- 245 (300)
T ss_pred cCCccceEEC-----CCCCEEEEEcCCCCeEEEEECCCCcEEEEE-----------------------------------
Confidence 1111234455 899886554 45678999998766543200
Q ss_pred CCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceeeec
Q 007234 326 ASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN 381 (612)
Q Consensus 326 ~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~~~ 381 (612)
.+...+.+++|+|||++|.++++.++.+++|+...
T Consensus 246 ---------------------~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~ 280 (300)
T TIGR03866 246 ---------------------LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAA 280 (300)
T ss_pred ---------------------EeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCC
Confidence 01114667889999999934456789999999854
No 105
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.89 E-value=4.2e-21 Score=197.89 Aligned_cols=327 Identities=15% Similarity=0.181 Sum_probs=227.7
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcEE----EEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEE
Q 007234 16 ALDYFAICSGDARIKIWDTLKGQVQ----TEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL 91 (612)
Q Consensus 16 dg~~las~s~dg~i~iwd~~~~~~~----~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~ 91 (612)
=|+++.++..++.+.||+..+++.- ..+.... ...++.+.. |+.. -+.|++
T Consensus 123 fGe~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~-----------------~~~Ital~H-P~TY-------LNKIvv 177 (910)
T KOG1539|consen 123 FGEHLIAVDISNILFVWKTSSIQEELYLQSTFLKVE-----------------GDFITALLH-PSTY-------LNKIVV 177 (910)
T ss_pred ecceEEEEEccCcEEEEEeccccccccccceeeecc-----------------CCceeeEec-chhh-------eeeEEE
Confidence 3778888888899999998774111 0111000 001222221 1111 356899
Q ss_pred EECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEEEECCCC
Q 007234 92 GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDG 171 (612)
Q Consensus 92 gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg 171 (612)
|+..|.+.+||+++++.+.++ .++.+.|+++.=+|-=..++.|..+|+|.+++++.++.+.+|+...+.|++++|.-||
T Consensus 178 Gs~~G~lql~Nvrt~K~v~~f-~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG 256 (910)
T KOG1539|consen 178 GSSQGRLQLWNVRTGKVVYTF-QEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDG 256 (910)
T ss_pred eecCCcEEEEEeccCcEEEEe-cccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCC
Confidence 999999999999999999888 5688999999999977789999999999999999999999999767899999999999
Q ss_pred CEEEEeC---CeEEEEEcCCCeeEEEEe-cCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccc------------
Q 007234 172 KMLATAA---GQLKTFNCSDHKKMQKFS-GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ------------ 235 (612)
Q Consensus 172 ~~l~~~~---g~i~lwd~~~~~~~~~~~-~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~------------ 235 (612)
+.+.+.+ |.+.+||++..+.+..+. .|.+.|....|.|....+++++ .|+.+++|-.+++...
T Consensus 257 ~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~-~DnSlk~~vfD~~dg~pR~LR~R~GHs~ 335 (910)
T KOG1539|consen 257 NPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAG-ADNSLKVWVFDSGDGVPRLLRSRGGHSA 335 (910)
T ss_pred CeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeecc-CCCceeEEEeeCCCCcchheeeccCCCC
Confidence 8765544 899999999988876665 7889999999999998888887 7998888855422210
Q ss_pred cceeeEee------------------------------------------------------------------------
Q 007234 236 SASCVLAM------------------------------------------------------------------------ 243 (612)
Q Consensus 236 ~~~~~~~~------------------------------------------------------------------------ 243 (612)
...|+.-.
T Consensus 336 Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~ 415 (910)
T KOG1539|consen 336 PPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVI 415 (910)
T ss_pred CchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhccee
Confidence 00000000
Q ss_pred ------------------------cCC-----ceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccC---
Q 007234 244 ------------------------EHP-----AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK--- 291 (612)
Q Consensus 244 ------------------------~~~-----~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~--- 291 (612)
.+. .....+++ +++-|++.+.|...|.|-+|++++|-....+.
T Consensus 416 ~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~-----vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ 490 (910)
T KOG1539|consen 416 TAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVC-----VSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSP 490 (910)
T ss_pred EEecCcceEEEEeccCcccccEEecCccccccCcceEEEE-----EeccCceEEEeccCCeEEEEEcccCeeecccccCc
Confidence 000 00111222 23778999999999999999999997766552
Q ss_pred CceeEeecccccCCCCcccchhhhcccccceecCCCceEEE---------------------------------EeCCcc
Q 007234 292 ATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFV---------------------------------AYGLLL 338 (612)
Q Consensus 292 ~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~---------------------------------~~g~~~ 338 (612)
.+...+.... ...-++ .+++++.+|+...|+-.-.. .+....
T Consensus 491 ah~~~V~gla-~D~~n~----~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t 565 (910)
T KOG1539|consen 491 AHKGEVTGLA-VDGTNR----LLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVT 565 (910)
T ss_pred cccCceeEEE-ecCCCc----eEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchh
Confidence 2222222211 011112 56777777766666422111 011112
Q ss_pred CceEEEeeccCCCeEEEEecCCCceEeccccceeeecceeee
Q 007234 339 KPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (612)
Q Consensus 339 ~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~~ 380 (612)
..+.+.+.+|.+.++.++|||||++| ++++.|++||+|++-
T Consensus 566 ~kvvR~f~gh~nritd~~FS~DgrWl-isasmD~tIr~wDlp 606 (910)
T KOG1539|consen 566 RKVVREFWGHGNRITDMTFSPDGRWL-ISASMDSTIRTWDLP 606 (910)
T ss_pred hhhhHHhhccccceeeeEeCCCCcEE-EEeecCCcEEEEecc
Confidence 23444566899999999999999999 999999999999984
No 106
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.89 E-value=5.5e-21 Score=174.85 Aligned_cols=297 Identities=11% Similarity=0.126 Sum_probs=206.2
Q ss_pred CCcccceeEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccc
Q 007234 2 GSSNIRDILTSFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (612)
Q Consensus 2 ~s~~V~~l~~~fsp-dg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~ 80 (612)
|-+.|++| ...| .|+|+++|+.||.|.|||++....... .+......|+ ...+...+| ...++.+.|.|.+
T Consensus 42 HgGsvNsL--~id~tegrymlSGgadgsi~v~Dl~n~t~~e~-s~li~k~~c~-v~~~h~~~H-ky~iss~~WyP~D--- 113 (397)
T KOG4283|consen 42 HGGSVNSL--QIDLTEGRYMLSGGADGSIAVFDLQNATDYEA-SGLIAKHKCI-VAKQHENGH-KYAISSAIWYPID--- 113 (397)
T ss_pred CCCcccee--eeccccceEEeecCCCccEEEEEeccccchhh-ccceeheeee-ccccCCccc-eeeeeeeEEeeec---
Confidence 44678777 7777 589999999999999999976541110 0000000111 122223344 4577889999998
Q ss_pred ccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCC---CEEEEEecCCcEEEEECCCCceeEEEec
Q 007234 81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHG---SCIYSAGADGMVCEIDPLTGSLLGKFRA 157 (612)
Q Consensus 81 ~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~---~~l~s~s~dg~v~iwd~~~~~~~~~~~~ 157 (612)
...+.+++-|.+++|||.++-+....+. -.+.|.+-+++|-. -++++|..|-.|++.|+.+|..-+++.+
T Consensus 114 -----tGmFtssSFDhtlKVWDtnTlQ~a~~F~--me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsG 186 (397)
T KOG4283|consen 114 -----TGMFTSSSFDHTLKVWDTNTLQEAVDFK--MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSG 186 (397)
T ss_pred -----CceeecccccceEEEeecccceeeEEee--cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeecc
Confidence 7789999999999999999988876663 56788888898832 3577777888999999999999999999
Q ss_pred CCCCeeEEEECCCCCEEE-EeC--CeEEEEEcCCC-eeEEEE--------------ecCCCCEEEEEEeeCCcEEEEEEc
Q 007234 158 STKGISCMAVSSDGKMLA-TAA--GQLKTFNCSDH-KKMQKF--------------SGHPGAVRFMTFSDNGKYVLSSAV 219 (612)
Q Consensus 158 ~~~~v~~l~~spdg~~l~-~~~--g~i~lwd~~~~-~~~~~~--------------~~h~~~v~~l~~sp~~~~l~s~s~ 219 (612)
|...|.++.|+|...+++ +|+ |.|++||++.. .++..+ ..|.+.|.+++|+.++.++++++
T Consensus 187 Hr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~g- 265 (397)
T KOG4283|consen 187 HRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCG- 265 (397)
T ss_pred ccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhcc-
Confidence 999999999999888765 555 99999999753 222222 35778899999999999999998
Q ss_pred CCCeEEEEEcCCCccccceeeEe----ecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCcee
Q 007234 220 GERYIALWRTDGVKKQSASCVLA----MEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKI 295 (612)
Q Consensus 220 ~d~~i~vwd~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~ 295 (612)
.|..+++|+..++.......... ..+....+. + -+...++---.++.+.++++-.+..++
T Consensus 266 td~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~----~-----~~s~vfv~~p~~~~lall~~~sgs~ir------- 329 (397)
T KOG4283|consen 266 TDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ----S-----MDSDVFVLFPNDGSLALLNLLEGSFVR------- 329 (397)
T ss_pred CccceEEeecccCcccccccccccccccccceEEEe----e-----cccceEEEEecCCeEEEEEccCceEEE-------
Confidence 68899999998876321000000 001111111 0 111222222334555555544443322
Q ss_pred EeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeec
Q 007234 296 LSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKR 375 (612)
Q Consensus 296 ~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~ 375 (612)
.+..|...+.+.++.||=+.. .+|+.|+.+.
T Consensus 330 ------------------------------------------------~l~~h~k~i~c~~~~~~fq~~-~tg~~d~ni~ 360 (397)
T KOG4283|consen 330 ------------------------------------------------RLSTHLKRINCAAYRPDFEQC-FTGDMNGNIY 360 (397)
T ss_pred ------------------------------------------------eeecccceeeEEeecCchhhh-hccccCCccc
Confidence 444565578888888888888 9999999999
Q ss_pred ceee
Q 007234 376 GRYV 379 (612)
Q Consensus 376 ~w~~ 379 (612)
.|..
T Consensus 361 ~w~p 364 (397)
T KOG4283|consen 361 MWSP 364 (397)
T ss_pred cccc
Confidence 9964
No 107
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.89 E-value=5.6e-20 Score=179.60 Aligned_cols=344 Identities=12% Similarity=0.086 Sum_probs=244.2
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCcccccccccccccccc---ccceeEEEeeeccccccccc-
Q 007234 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHL---SVDYTCMKWLSVDRKKKRKL- 84 (612)
Q Consensus 9 l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~---~~~~~~~~w~~~~~~~~~~~- 84 (612)
+|++|.++|+ +++|..+|.|.||+..+.+..+....|.+.+.+++...+ |.+ ..+-..+.|... -++.+..
T Consensus 250 l~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~---GtllSGgKDRki~~Wd~~-y~k~r~~e 324 (626)
T KOG2106|consen 250 LCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRD---GTLLSGGKDRKIILWDDN-YRKLRETE 324 (626)
T ss_pred EEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecC---ccEeecCccceEEecccc-cccccccc
Confidence 7889999997 569999999999999988887777799999988877665 332 334555677622 1111110
Q ss_pred -------------CCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCce
Q 007234 85 -------------GSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL 151 (612)
Q Consensus 85 -------------~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~ 151 (612)
+..-|++|+..+.|.-=+++++..+.. .+|....+.++.+|+.+.+++|+.|+.+++|+ ..++
T Consensus 325 lPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v--~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~ 400 (626)
T KOG2106|consen 325 LPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTV--QGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKL 400 (626)
T ss_pred CchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEE--EecccceeeEEcCCChhheeeccCcceEEEcc--CCce
Confidence 122278888888887777777766533 47999999999999999999999999999999 4455
Q ss_pred eEEEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEc
Q 007234 152 LGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRT 229 (612)
Q Consensus 152 ~~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~ 229 (612)
+-+.. ...++.|+.|+|.| .++.|. |...+.|.++...+..-.. ..+++.++|+|+|.+|+.++ .|+.|++|.+
T Consensus 401 ~wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs-~d~~iyiy~V 476 (626)
T KOG2106|consen 401 EWTKI-IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGS-HDNHIYIYRV 476 (626)
T ss_pred eEEEE-ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEec-CCCeEEEEEE
Confidence 44433 45788999999999 888887 9999999999666555444 88999999999999999987 8999999999
Q ss_pred CCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCcee-----EeecccccC
Q 007234 230 DGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKI-----LSSSEDVNS 304 (612)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~-----~~~~~~~~s 304 (612)
...... ......+....+..+.|+ +|++++.+-+.|-.|.+|......++...+..+. .+.....-.
T Consensus 477 s~~g~~---y~r~~k~~gs~ithLDwS-----~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~ 548 (626)
T KOG2106|consen 477 SANGRK---YSRVGKCSGSPITHLDWS-----SDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGG 548 (626)
T ss_pred CCCCcE---EEEeeeecCceeEEeeec-----CCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecc
Confidence 876533 233333445778888887 9999999999999999995444443333221111 000000001
Q ss_pred CCCc--------ccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecc
Q 007234 305 KSQK--------SATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRG 376 (612)
Q Consensus 305 ~~~~--------~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~ 376 (612)
.++. .....+++|...|.++++. .-.......+....+|.+.|.+++|+.+-..+ ++.+.|.++..
T Consensus 549 s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~-----yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~l-i~tg~D~Si~q 622 (626)
T KOG2106|consen 549 SDGTDINAVARSHCEKLLASGDDFGKVHLFS-----YPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHL-ISTGKDTSIMQ 622 (626)
T ss_pred cCCchHHHhhhhhhhhhhhccccCceEEEEc-----cccCCCcccceeeccccceeEEEEEeeCCceE-EecCCCceEEE
Confidence 1111 0111444444444444322 11233456677888999999999999988888 55559999999
Q ss_pred eee
Q 007234 377 RYV 379 (612)
Q Consensus 377 w~~ 379 (612)
|.+
T Consensus 623 W~l 625 (626)
T KOG2106|consen 623 WRL 625 (626)
T ss_pred EEe
Confidence 975
No 108
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.89 E-value=2e-21 Score=186.51 Aligned_cols=241 Identities=17% Similarity=0.210 Sum_probs=199.7
Q ss_pred CcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccc
Q 007234 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (612)
Q Consensus 3 s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (612)
+..|..+ .|+|+...+++++.|-.|+||......+......|..+|+.....+.
T Consensus 261 ~kki~~v--~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~t------------------------ 314 (506)
T KOG0289|consen 261 TKKITSV--KFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPT------------------------ 314 (506)
T ss_pred ceEEEEE--EeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccC------------------------
Confidence 4456444 99999999999999999999999888888888888888876666666
Q ss_pred ccCCcEEEEEECCCcEEEEEcCCCeEEEEeccC-CCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCC
Q 007234 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDC-HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG 161 (612)
Q Consensus 83 ~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~-h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~ 161 (612)
+.+++.++.+|.....|+++|.++...... ..-.+++.+|+|||..|.+|..||.|++||+.++..+..|.+|.++
T Consensus 315 ---geYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~ 391 (506)
T KOG0289|consen 315 ---GEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGP 391 (506)
T ss_pred ---CcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCc
Confidence 999999999999999999999988666432 3346899999999999999999999999999999999999999999
Q ss_pred eeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCC-CCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccce
Q 007234 162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHP-GAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS 238 (612)
Q Consensus 162 v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~-~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~ 238 (612)
|..++|+.+|-+|+++. +.|++||++..+.++++.-.. .++.++.|.+.|++|+.+| .|=.|++++-.+.. +.
T Consensus 392 vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g-~~l~Vy~~~k~~k~---W~ 467 (506)
T KOG0289|consen 392 VKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAG-SDLQVYICKKKTKS---WT 467 (506)
T ss_pred eeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeec-ceeEEEEEeccccc---ce
Confidence 99999999999999988 789999999988888776433 3699999999999999986 46445554433332 33
Q ss_pred eeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEEC
Q 007234 239 CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (612)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~ 281 (612)
++..+..+....+.+.|. ...+++++++.|..++++.+
T Consensus 468 ~~~~~~~~sg~st~v~Fg-----~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 468 EIKELADHSGLSTGVRFG-----EHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred eeehhhhcccccceeeec-----ccceEEeeccchhheEEeec
Confidence 555555555566788887 77899999999999888754
No 109
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=3.7e-21 Score=200.53 Aligned_cols=235 Identities=14% Similarity=0.224 Sum_probs=189.2
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCC-cEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcE
Q 007234 10 LTSFSPALDYFAICSGDARIKIWDTLKG-QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (612)
Q Consensus 10 ~~~fspdg~~las~s~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (612)
.++|.|+|++|.+++.||.|++|+..+. +...++.- ....+.|.... ...
T Consensus 18 ~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~---------------------~g~~v~~ia~~--------s~~ 68 (933)
T KOG1274|consen 18 LICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDI---------------------SGELVSSIACY--------SNH 68 (933)
T ss_pred EEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhc---------------------cCceeEEEeec--------ccc
Confidence 3499999999999999999999987655 22222210 11122232222 568
Q ss_pred EEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEEEEC
Q 007234 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVS 168 (612)
Q Consensus 89 l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~s 168 (612)
+++|+.+++|.+|....++.-.-+ ...+-++++++|+.+|++++.||.|-.|++.++.+......+++|..+|.++.|+
T Consensus 69 f~~~s~~~tv~~y~fps~~~~~iL-~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~ 147 (933)
T KOG1274|consen 69 FLTGSEQNTVLRYKFPSGEEDTIL-ARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYD 147 (933)
T ss_pred eEEeeccceEEEeeCCCCCcccee-eeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEc
Confidence 999999999999999888764222 3467899999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEeC--CeEEEEEcCCCeeEEEEecC--------CCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccce
Q 007234 169 SDGKMLATAA--GQLKTFNCSDHKKMQKFSGH--------PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS 238 (612)
Q Consensus 169 pdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h--------~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~ 238 (612)
|.+++||+.+ |.|++||++++.+...+.+- ...+..++|+|+|..++..+ -|+.|++|+..+....
T Consensus 148 p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~-~d~~Vkvy~r~~we~~--- 223 (933)
T KOG1274|consen 148 PKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPP-VDNTVKVYSRKGWELQ--- 223 (933)
T ss_pred CCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeec-cCCeEEEEccCCceeh---
Confidence 9999999887 99999999998776665432 34567789999976666666 5999999999988755
Q ss_pred eeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCC
Q 007234 239 CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN 283 (612)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~ 283 (612)
..+...+....+..+.|+ |+|.|||+++.||.|.|||.++
T Consensus 224 f~Lr~~~~ss~~~~~~ws-----PnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 224 FKLRDKLSSSKFSDLQWS-----PNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred eeecccccccceEEEEEc-----CCCcEEeeeccCCcEEEEeccc
Confidence 334444555557788887 9999999999999999999987
No 110
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=3.9e-21 Score=177.43 Aligned_cols=247 Identities=15% Similarity=0.167 Sum_probs=182.8
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCc
Q 007234 8 DILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (612)
Q Consensus 8 ~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (612)
..||.||+.|.+||+|+.||+|.|||..|...-+.+.+|.-++.+++|+++ ++
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~d---------------------------gr 78 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRD---------------------------GR 78 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCC---------------------------CC
Confidence 568999999999999999999999999998887777777666665555555 88
Q ss_pred EEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCC-EEEEEecCCcEEEEECCCCceeEEEec-CC----CC
Q 007234 88 LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTGSLLGKFRA-ST----KG 161 (612)
Q Consensus 88 ~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~-~l~s~s~dg~v~iwd~~~~~~~~~~~~-~~----~~ 161 (612)
.+++++.|..|.+||+..|.+++++. ..++|+.+.|+|..+ .++++-.+..-.+-++..+... .+.. .. ..
T Consensus 79 ~LltsS~D~si~lwDl~~gs~l~rir--f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~-~Lp~d~d~dln~s 155 (405)
T KOG1273|consen 79 KLLTSSRDWSIKLWDLLKGSPLKRIR--FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHS-VLPKDDDGDLNSS 155 (405)
T ss_pred EeeeecCCceeEEEeccCCCceeEEE--ccCccceeeeccccCCeEEEEEecCCcEEEEecCCcee-eccCCCccccccc
Confidence 99999999999999999999988873 679999999999543 3444434555555565443221 1111 11 12
Q ss_pred eeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCC-CCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccc---
Q 007234 162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHP-GAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ--- 235 (612)
Q Consensus 162 v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~-~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~--- 235 (612)
..+..|.+.|+++++|. |.+.++|..+.+++..++-.. ..|.++.|+..|++|+.-+ .|+.|+.|++..-...
T Consensus 156 as~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNt-sDRvIR~ye~~di~~~~r~ 234 (405)
T KOG1273|consen 156 ASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINT-SDRVIRTYEISDIDDEGRD 234 (405)
T ss_pred cccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEec-CCceEEEEehhhhcccCcc
Confidence 34456899999999998 999999999999998887666 7899999999999999987 6999999998632111
Q ss_pred -cceeeEeec--CCceeEEeEEecCCccCCCCcEEEEEec-CCcEEEEECCCcceeccc
Q 007234 236 -SASCVLAME--HPAVFMDCRCIDNGGVDDAGLYVLAISE-TGVCYIWYGQNIEELRNT 290 (612)
Q Consensus 236 -~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~t~s~-dg~i~iwd~~~~~~~~~~ 290 (612)
.......+. -.......++|+ .+|.++++++. ...++||.-..|..++..
T Consensus 235 ~e~e~~~K~qDvVNk~~Wk~ccfs-----~dgeYv~a~s~~aHaLYIWE~~~GsLVKIL 288 (405)
T KOG1273|consen 235 GEVEPEHKLQDVVNKLQWKKCCFS-----GDGEYVCAGSARAHALYIWEKSIGSLVKIL 288 (405)
T ss_pred CCcChhHHHHHHHhhhhhhheeec-----CCccEEEeccccceeEEEEecCCcceeeee
Confidence 000011111 112234456666 89999999875 457999998888776543
No 111
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.88 E-value=2.4e-21 Score=187.71 Aligned_cols=255 Identities=15% Similarity=0.243 Sum_probs=183.9
Q ss_pred CcccceeEEEEcCCC-CEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccc-cccccccceeEEEeeeccccc
Q 007234 3 SSNIRDILTSFSPAL-DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRL-EREHLSVDYTCMKWLSVDRKK 80 (612)
Q Consensus 3 s~~V~~l~~~fspdg-~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~-~~~~~~~~~~~~~w~~~~~~~ 80 (612)
.+.|+.+ .+-|.. ..+|+.+..+.|.|||..+-.......+ .+.+++ ..||.. ....+.|....
T Consensus 124 ~gEVnRa--RymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~--------~~~Pdl~L~gH~~-eg~glsWn~~~--- 189 (422)
T KOG0264|consen 124 DGEVNRA--RYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASG--------ECRPDLRLKGHEK-EGYGLSWNRQQ--- 189 (422)
T ss_pred Cccchhh--hhCCCCCcEEEecCCCCCEEEEEeccCCCcccccc--------cCCCceEEEeecc-ccccccccccc---
Confidence 4556555 777754 4677778889999999864432221110 111111 234444 24457888776
Q ss_pred ccccCCcEEEEEECCCcEEEEEcCCCeE------EEEeccCCCCCeEEEEEec-CCCEEEEEecCCcEEEEECC--CCce
Q 007234 81 KRKLGSSLLVLGTGGGDVLALAVSAGQL------KWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPL--TGSL 151 (612)
Q Consensus 81 ~~~~~~~~l~~gs~~g~I~vwd~~~~~~------~~~~~~~h~~~V~~l~~sp-~~~~l~s~s~dg~v~iwd~~--~~~~ 151 (612)
...+++|+.++.|++||+..... ......+|+..|..++|++ +...|.+++.|+.+.+||++ +.++
T Consensus 190 -----~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~ 264 (422)
T KOG0264|consen 190 -----EGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKP 264 (422)
T ss_pred -----ceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCC
Confidence 56799999999999999976433 2345578999999999999 55678999999999999999 5666
Q ss_pred eEEEecCCCCeeEEEECC-CCCEEEEeC--CeEEEEEcCCC-eeEEEEecCCCCEEEEEEeeCCc-EEEEEEcCCCeEEE
Q 007234 152 LGKFRASTKGISCMAVSS-DGKMLATAA--GQLKTFNCSDH-KKMQKFSGHPGAVRFMTFSDNGK-YVLSSAVGERYIAL 226 (612)
Q Consensus 152 ~~~~~~~~~~v~~l~~sp-dg~~l~~~~--g~i~lwd~~~~-~~~~~~~~h~~~v~~l~~sp~~~-~l~s~s~~d~~i~v 226 (612)
....++|...|.|++|+| ++.+||+|+ ++|++||+++. +++.++.+|...|.++.|+|... .|+++| .|+.+.|
T Consensus 265 ~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg-~D~rl~v 343 (422)
T KOG0264|consen 265 SHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSG-TDRRLNV 343 (422)
T ss_pred cccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecc-cCCcEEE
Confidence 777888999999999999 556677777 89999999975 56889999999999999999765 555555 7999999
Q ss_pred EEcCCCccc---------cceeeEeecCCceeEEeEEecCCccCCCCc-EEEEEecCCcEEEEECC
Q 007234 227 WRTDGVKKQ---------SASCVLAMEHPAVFMDCRCIDNGGVDDAGL-YVLAISETGVCYIWYGQ 282 (612)
Q Consensus 227 wd~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~t~s~dg~i~iwd~~ 282 (612)
||+..-... ....+|...++...+.-..|. |... .+++.+.|+.++||...
T Consensus 344 WDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWn-----p~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 344 WDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWN-----PNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred EeccccccccChhhhccCCcceeEEecCcccccccccCC-----CCCCeEEEEecCCceEEEeecc
Confidence 998753322 122334444444444444444 5544 56777899999999864
No 112
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=1.2e-21 Score=174.89 Aligned_cols=234 Identities=16% Similarity=0.232 Sum_probs=182.2
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCC---cEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEE
Q 007234 14 SPALDYFAICSGDARIKIWDTLKG---QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV 90 (612)
Q Consensus 14 spdg~~las~s~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~ 90 (612)
+--|..||+|+.|++|+|+.++++ +.+.++.+|.+++....|.++ + . +.+|+
T Consensus 20 DyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahP-k--~----------------------G~iLA 74 (299)
T KOG1332|consen 20 DYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHP-K--F----------------------GTILA 74 (299)
T ss_pred hhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeeccc-c--c----------------------CcEee
Confidence 335889999999999999998755 468899999999998888887 1 0 88999
Q ss_pred EEECCCcEEEEEcCCCeEEEE-eccCCCCCeEEEEEecC--CCEEEEEecCCcEEEEECCCC---ceeEEEecCCCCeeE
Q 007234 91 LGTGGGDVLALAVSAGQLKWR-LSDCHPGGVSAISFATH--GSCIYSAGADGMVCEIDPLTG---SLLGKFRASTKGISC 164 (612)
Q Consensus 91 ~gs~~g~I~vwd~~~~~~~~~-~~~~h~~~V~~l~~sp~--~~~l~s~s~dg~v~iwd~~~~---~~~~~~~~~~~~v~~ 164 (612)
+++.||.|.||.-.+|+-.+. ....|.+.|++++|.|. |-.|++++.||.|.+.+++.. ...+....|.-.|++
T Consensus 75 ScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~Gvns 154 (299)
T KOG1332|consen 75 SCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNS 154 (299)
T ss_pred EeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccce
Confidence 999999999999988853211 12469999999999984 456999999999999988754 233445678889999
Q ss_pred EEECCC---C-----------CEEEEeC--CeEEEEEcCCCe--eEEEEecCCCCEEEEEEeeCC----cEEEEEEcCCC
Q 007234 165 MAVSSD---G-----------KMLATAA--GQLKTFNCSDHK--KMQKFSGHPGAVRFMTFSDNG----KYVLSSAVGER 222 (612)
Q Consensus 165 l~~spd---g-----------~~l~~~~--g~i~lwd~~~~~--~~~~~~~h~~~v~~l~~sp~~----~~l~s~s~~d~ 222 (612)
++|.|- | +.|++|+ +.|+||+...++ .-++|.+|...|+.++|.|.- .++++++ .||
T Consensus 155 Vswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~S-qDg 233 (299)
T KOG1332|consen 155 VSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCS-QDG 233 (299)
T ss_pred eeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEec-CCC
Confidence 999985 4 5688888 899999998763 345689999999999999964 4788886 899
Q ss_pred eEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEE
Q 007234 223 YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY 280 (612)
Q Consensus 223 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd 280 (612)
++.||..+..... .........+ .++-.+.++ ..|+.|++++.|+.+.+|.
T Consensus 234 ~viIwt~~~e~e~-wk~tll~~f~-~~~w~vSWS-----~sGn~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 234 TVIIWTKDEEYEP-WKKTLLEEFP-DVVWRVSWS-----LSGNILAVSGGDNKVTLWK 284 (299)
T ss_pred cEEEEEecCccCc-ccccccccCC-cceEEEEEe-----ccccEEEEecCCcEEEEEE
Confidence 9999988743221 1111111222 233445566 8899999999999999996
No 113
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=1.5e-21 Score=194.11 Aligned_cols=316 Identities=13% Similarity=0.136 Sum_probs=218.5
Q ss_pred CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccc-eeEEEeeec-ccc
Q 007234 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVD-YTCMKWLSV-DRK 79 (612)
Q Consensus 2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~-~~~~~w~~~-~~~ 79 (612)
|++.|++| +.+|.|.+||+|+.||+|+||.+.+|+|+.++. ..+.|.+++|++.-...-+... ..|+....+ -+.
T Consensus 399 Htg~Vr~i--Svdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~ 475 (733)
T KOG0650|consen 399 HTGLVRSI--SVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGD 475 (733)
T ss_pred cCCeEEEE--EecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCceEEeCccccc
Confidence 46778766 899999999999999999999999999999886 3334555555544110000000 000000000 000
Q ss_pred c-ccccCCcEEEEE----ECCCcEEEEEcCCCeEE---EEeccCCCCCeEEEEEecCCCEEEEEecC---CcEEEEECCC
Q 007234 80 K-KRKLGSSLLVLG----TGGGDVLALAVSAGQLK---WRLSDCHPGGVSAISFATHGSCIYSAGAD---GMVCEIDPLT 148 (612)
Q Consensus 80 ~-~~~~~~~~l~~g----s~~g~I~vwd~~~~~~~---~~~~~~h~~~V~~l~~sp~~~~l~s~s~d---g~v~iwd~~~ 148 (612)
. ........++.+ ..++.+..|.-...+.. ..+.-.|...|..+.|+..|.+|++...+ ..|.++++..
T Consensus 476 ~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK 555 (733)
T KOG0650|consen 476 RLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSK 555 (733)
T ss_pred hhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEeccc
Confidence 0 000001122222 12344556654421111 01223588999999999999999988654 4799999987
Q ss_pred CceeEEEecCCCCeeEEEECCCCCEEEEeC-CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEE
Q 007234 149 GSLLGKFRASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALW 227 (612)
Q Consensus 149 ~~~~~~~~~~~~~v~~l~~spdg~~l~~~~-g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vw 227 (612)
.+...-|+...+.|.++.|+|...+|++++ ..|++||+..+..++++......|..++.+|.|..|+.++ .|+.+..+
T Consensus 556 ~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs-~d~k~~Wf 634 (733)
T KOG0650|consen 556 RKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGS-YDKKMCWF 634 (733)
T ss_pred ccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEec-CCCeeEEE
Confidence 766666766778899999999999999999 8999999998888888877778899999999999999887 79999999
Q ss_pred EcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCC
Q 007234 228 RTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQ 307 (612)
Q Consensus 228 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~ 307 (612)
|+.-.... ...+.++...+..++|. +.-.++++|+.||++.||...-...+.
T Consensus 635 DldlsskP----yk~lr~H~~avr~Va~H-----~ryPLfas~sdDgtv~Vfhg~VY~Dl~------------------- 686 (733)
T KOG0650|consen 635 DLDLSSKP----YKTLRLHEKAVRSVAFH-----KRYPLFASGSDDGTVIVFHGMVYNDLL------------------- 686 (733)
T ss_pred EcccCcch----hHHhhhhhhhhhhhhhc-----cccceeeeecCCCcEEEEeeeeehhhh-------------------
Confidence 99876533 45667788888888886 667789999999999998632111110
Q ss_pred cccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCC----eEEEEecCCCceEeccccceeeecce
Q 007234 308 KSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGE----DINLNCSQDGVLLPMSQSLLKSKRGR 377 (612)
Q Consensus 308 ~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~----v~~l~~S~dg~~l~~s~s~d~~~~~w 377 (612)
+ +.+......+.+|... |..+.|.|...+| +|++.|+++|+|
T Consensus 687 q---------------------------npliVPlK~L~gH~~~~~~gVLd~~wHP~qpWL-fsAGAd~tirlf 732 (733)
T KOG0650|consen 687 Q---------------------------NPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWL-FSAGADGTIRLF 732 (733)
T ss_pred c---------------------------CCceEeeeeccCceeecccceEeecccCCCceE-EecCCCceEEee
Confidence 0 0111112345555544 8888999999999 999999999998
No 114
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=6.5e-21 Score=175.98 Aligned_cols=261 Identities=19% Similarity=0.241 Sum_probs=191.1
Q ss_pred ccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccccc
Q 007234 5 NIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (612)
Q Consensus 5 ~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (612)
.|.++ .|+|.++.|+.++.||++++||+........++ |..++.+++|..
T Consensus 15 ~IS~v--~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d--------------------------- 64 (323)
T KOG1036|consen 15 GISSV--KFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD--------------------------- 64 (323)
T ss_pred ceeeE--EEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccC---------------------------
Confidence 46555 999999999999999999999999887666664 555555555543
Q ss_pred CCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeE
Q 007234 85 GSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISC 164 (612)
Q Consensus 85 ~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~ 164 (612)
...+++|+.||.|+.+|+.++.... ...|..+|.|+.+++....+++||.|++|++||.+.......+.. ...|.+
T Consensus 65 -~~~~~~G~~dg~vr~~Dln~~~~~~--igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~ 140 (323)
T KOG1036|consen 65 -ESTIVTGGLDGQVRRYDLNTGNEDQ--IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYC 140 (323)
T ss_pred -CceEEEeccCceEEEEEecCCccee--eccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc-CceEEE
Confidence 3458999999999999999988752 256999999999999888899999999999999987666666654 347888
Q ss_pred EEECCCCCEEEEeC--CeEEEEEcCCCeeEEEE--ecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCcccc----
Q 007234 165 MAVSSDGKMLATAA--GQLKTFNCSDHKKMQKF--SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS---- 236 (612)
Q Consensus 165 l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~--~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~---- 236 (612)
+... |..|++|. ..+.+||+++.....+. ..-.-.+.++++-|++.-+++++ -||.|.+=.++......
T Consensus 141 ~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sS-ieGRVavE~~d~s~~~~skky 217 (323)
T KOG1036|consen 141 MDVS--GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSS-IEGRVAVEYFDDSEEAQSKKY 217 (323)
T ss_pred Eecc--CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEe-ecceEEEEccCCchHHhhhce
Confidence 8876 55566544 79999999987543322 22345688999999777677766 69988876666552111
Q ss_pred -ceeeEeec---CCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCc
Q 007234 237 -ASCVLAME---HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQK 308 (612)
Q Consensus 237 -~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 308 (612)
..|..... .....+..+.|+ |-...|+||+.||.|.+||+.+.+.+..+.+-...+.+.. |+-++.
T Consensus 218 aFkCHr~~~~~~~~~yPVNai~Fh-----p~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~sls-fs~dG~ 287 (323)
T KOG1036|consen 218 AFKCHRLSEKDTEIIYPVNAIAFH-----PIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLS-FSMDGS 287 (323)
T ss_pred eEEeeecccCCceEEEEeceeEec-----cccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEE-eccCCC
Confidence 11211111 112445667776 7778899999999999999999988877766644444333 555554
No 115
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.88 E-value=2.3e-22 Score=188.83 Aligned_cols=272 Identities=10% Similarity=0.035 Sum_probs=207.6
Q ss_pred cccceeEEEEcCCC-CEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccc
Q 007234 4 SNIRDILTSFSPAL-DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (612)
Q Consensus 4 ~~V~~l~~~fspdg-~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (612)
..|.++ +=+|.. ..+|+|+.||.|+|||+.+..++.+|+.|.+.|.++++..
T Consensus 67 dGV~~l--akhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~------------------------- 119 (433)
T KOG0268|consen 67 DGVSCL--AKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ------------------------- 119 (433)
T ss_pred cccchh--hcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc-------------------------
Confidence 455444 777766 6789999999999999999999999999998888776653
Q ss_pred ccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCe
Q 007234 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI 162 (612)
Q Consensus 83 ~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v 162 (612)
..+++++.|.+|+.|.+... ....+. ..+.+.++.-+..+..++|||.+ |.+||.....+++.+.-....|
T Consensus 120 ----~~~~tvgdDKtvK~wk~~~~-p~~til--g~s~~~gIdh~~~~~~FaTcGe~--i~IWD~~R~~Pv~smswG~Dti 190 (433)
T KOG0268|consen 120 ----TSFFTVGDDKTVKQWKIDGP-PLHTIL--GKSVYLGIDHHRKNSVFATCGEQ--IDIWDEQRDNPVSSMSWGADSI 190 (433)
T ss_pred ----cceEEecCCcceeeeeccCC-cceeee--ccccccccccccccccccccCce--eeecccccCCccceeecCCCce
Confidence 34789999999999998763 444442 34667888877777889999764 8999999999999999888899
Q ss_pred eEEEECCCCCE-EEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCcccccee
Q 007234 163 SCMAVSSDGKM-LATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC 239 (612)
Q Consensus 163 ~~l~~spdg~~-l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~ 239 (612)
.++.|+|-... |+++. +.|.+||++++.+++++. -.-.-+.|+|+|.+-.|+++ .+|..++.||++.-+..
T Consensus 191 ~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a-~ED~nlY~~DmR~l~~p---- 264 (433)
T KOG0268|consen 191 SSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAA-NEDHNLYTYDMRNLSRP---- 264 (433)
T ss_pred eEEecCCCcchheeeeccCCceEEEecccCCccceee-eeccccceecCccccceeec-cccccceehhhhhhccc----
Confidence 99999996654 44543 899999999999887775 23345789999955445554 58999999999886543
Q ss_pred eEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCce-eEeecccccCCCCcccchhhhccc
Q 007234 240 VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATK-ILSSSEDVNSKSQKSATAAIFAAK 318 (612)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~~~~i~~~~ 318 (612)
+.....+...+..+.|+ |.|+-+++||.|.+|+||....+.........+ ..+.+.. ++-|.+ +|++|+
T Consensus 265 ~~v~~dhvsAV~dVdfs-----ptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk-~S~Dsk----yi~SGS 334 (433)
T KOG0268|consen 265 LNVHKDHVSAVMDVDFS-----PTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVK-YSMDSK----YIISGS 334 (433)
T ss_pred chhhcccceeEEEeccC-----CCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEE-Eecccc----EEEecC
Confidence 23334555566667787 999999999999999999987775432222221 2233333 677888 999999
Q ss_pred ccceecCCC
Q 007234 319 LQDIVKPAS 327 (612)
Q Consensus 319 ~d~~~~~~~ 327 (612)
.|+.+++|.
T Consensus 335 dd~nvRlWk 343 (433)
T KOG0268|consen 335 DDGNVRLWK 343 (433)
T ss_pred CCcceeeee
Confidence 988777655
No 116
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=7.6e-23 Score=207.49 Aligned_cols=232 Identities=15% Similarity=0.244 Sum_probs=201.2
Q ss_pred CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (612)
Q Consensus 2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (612)
|+..|..+ ..-..++.+++|+.|..+-+|.+..-..+..+.+|.+++.++.|..+
T Consensus 27 hsaav~~l--k~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~----------------------- 81 (825)
T KOG0267|consen 27 HSAAVGCL--KIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTS----------------------- 81 (825)
T ss_pred hhhhhcee--eeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcc-----------------------
Confidence 45566555 55567788999999999999999888888889999999998888877
Q ss_pred cccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCC
Q 007234 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG 161 (612)
Q Consensus 82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~ 161 (612)
..+|+.|+.+|+|++||++.++.++.+ .+|...+..+.|+|-+.++++|+.|+.+++||.+..-+.+.+.+|...
T Consensus 82 ----E~LlaagsasgtiK~wDleeAk~vrtL-tgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~v 156 (825)
T KOG0267|consen 82 ----ERLLAAGSASGTIKVWDLEEAKIVRTL-TGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRV 156 (825)
T ss_pred ----hhhhcccccCCceeeeehhhhhhhhhh-hccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcce
Confidence 778999999999999999999988766 589999999999999999999999999999999988999999999999
Q ss_pred eeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCcccccee
Q 007234 162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC 239 (612)
Q Consensus 162 v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~ 239 (612)
+.++.|+|+|++++.++ .++++||...|+...+|.+|.+.+..+.|+|..-.+.+++ .|+++++||+++-..+
T Consensus 157 v~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs-~d~tv~f~dletfe~I---- 231 (825)
T KOG0267|consen 157 VDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGS-SDRTVRFWDLETFEVI---- 231 (825)
T ss_pred eEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCC-CCceeeeeccceeEEe----
Confidence 99999999999999998 7999999999999999999999999999999887777776 7999999999976533
Q ss_pred eEeecCCceeEEeEEecCCccCCCCcEEEEEecCC
Q 007234 240 VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG 274 (612)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg 274 (612)
-..+.....+.+..|. +++..+.+|..+.
T Consensus 232 -~s~~~~~~~v~~~~fn-----~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 232 -SSGKPETDGVRSLAFN-----PDGKIVLSGEQIS 260 (825)
T ss_pred -eccCCccCCceeeeec-----CCceeeecCchhh
Confidence 2222334445677776 8998888887654
No 117
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.88 E-value=1.1e-21 Score=190.99 Aligned_cols=230 Identities=16% Similarity=0.253 Sum_probs=183.6
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCcEE--EEeeccCCccccccccccccccccccceeEEEeeecccccccccCCc
Q 007234 10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQ--TEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (612)
Q Consensus 10 ~~~fspdg~~las~s~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (612)
+|...|||+-|++|+.-.++.|||+..-... .++.........+..+++ .+
T Consensus 470 SckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spD---------------------------ak 522 (705)
T KOG0639|consen 470 SCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPD---------------------------AK 522 (705)
T ss_pred eeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCc---------------------------cc
Confidence 3589999999999999999999999865533 222211111111222222 67
Q ss_pred EEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEEEE
Q 007234 88 LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAV 167 (612)
Q Consensus 88 ~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~ 167 (612)
+.+++..||+|.|||+.....++.+ .+|+..+.|+..++||..|+||+.|++|+.||++.++.+.... ....|.++.+
T Consensus 523 vcFsccsdGnI~vwDLhnq~~Vrqf-qGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~ 600 (705)
T KOG0639|consen 523 VCFSCCSDGNIAVWDLHNQTLVRQF-QGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGY 600 (705)
T ss_pred eeeeeccCCcEEEEEcccceeeecc-cCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh-hhhhheeccc
Confidence 7899999999999999998888777 7899999999999999999999999999999999998776654 4568999999
Q ss_pred CCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecC
Q 007234 168 SSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEH 245 (612)
Q Consensus 168 spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~ 245 (612)
+|.+.++++|- +.+.+...... ....+.-|.+-|.++.|++.|+++++.| .|..+..|...-+.. ++....
T Consensus 601 cP~~dWlavGMens~vevlh~skp-~kyqlhlheScVLSlKFa~cGkwfvStG-kDnlLnawrtPyGas-----iFqskE 673 (705)
T KOG0639|consen 601 CPTGDWLAVGMENSNVEVLHTSKP-EKYQLHLHESCVLSLKFAYCGKWFVSTG-KDNLLNAWRTPYGAS-----IFQSKE 673 (705)
T ss_pred CCCccceeeecccCcEEEEecCCc-cceeecccccEEEEEEecccCceeeecC-chhhhhhccCccccc-----eeeccc
Confidence 99999999998 67777775433 3456778999999999999999999998 799999999888763 355555
Q ss_pred CceeEEeEEecCCccCCCCcEEEEEecCCcEEEEEC
Q 007234 246 PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (612)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~ 281 (612)
...+++| .++ .|.+++++|+.|+...+|.+
T Consensus 674 ~SsVlsC-DIS-----~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 674 SSSVLSC-DIS-----FDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred cCcceee-eec-----cCceEEEecCCCcceEEEEE
Confidence 5555444 344 78899999999999988864
No 118
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.88 E-value=6.4e-21 Score=186.59 Aligned_cols=281 Identities=13% Similarity=0.150 Sum_probs=198.9
Q ss_pred CcEEEEEECCCcEEEEEcCCCe----EEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEE------
Q 007234 86 SSLLVLGTGGGDVLALAVSAGQ----LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKF------ 155 (612)
Q Consensus 86 ~~~l~~gs~~g~I~vwd~~~~~----~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~------ 155 (612)
|..+++|+.|.+|++||...-. ..+.+.......|.++.|++.|..|++.+.....+++|-...+.....
T Consensus 179 GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI 258 (641)
T KOG0772|consen 179 GARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYI 258 (641)
T ss_pred CceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhh
Confidence 8889999999999999997532 233444555678999999999999999998999999995433332222
Q ss_pred ------ecCCCCeeEEEECCCCC-EEEEeC--CeEEEEEcCCCee-EEEEe-----cCCCCEEEEEEeeCCcEEEEEEcC
Q 007234 156 ------RASTKGISCMAVSSDGK-MLATAA--GQLKTFNCSDHKK-MQKFS-----GHPGAVRFMTFSDNGKYVLSSAVG 220 (612)
Q Consensus 156 ------~~~~~~v~~l~~spdg~-~l~~~~--g~i~lwd~~~~~~-~~~~~-----~h~~~v~~l~~sp~~~~l~s~s~~ 220 (612)
++|...++|.+|+|+.+ .+++++ |++++||+...+. ...+. +..-+++.++|+|||+++++++ .
T Consensus 259 ~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc-~ 337 (641)
T KOG0772|consen 259 RDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGC-L 337 (641)
T ss_pred hhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcc-c
Confidence 45777899999999764 344555 9999999986543 22222 3345789999999999988887 7
Q ss_pred CCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcce-ecccCCce-eEee
Q 007234 221 ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE-LRNTKATK-ILSS 298 (612)
Q Consensus 221 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~-~~~~~~~~-~~~~ 298 (612)
||.|.+|+..........++.........++++.|+ +||++|++-+.|+++++||++..+. +....... .--.
T Consensus 338 DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS-----~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~ 412 (641)
T KOG0772|consen 338 DGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFS-----YDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPG 412 (641)
T ss_pred CCceeeeecCCcccccceEeeeccCCCCceeEEEec-----cccchhhhccCCCceeeeeccccccchhhhcCCCccCCC
Confidence 999999998655433222333333344578899998 9999999999999999999987643 22221111 1111
Q ss_pred cccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeeccee
Q 007234 299 SEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY 378 (612)
Q Consensus 299 ~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~ 378 (612)
....|+|+.+ .|++|...-. ....|. +..+....+....++......|..+.|.|.-..+ +.|+.||+++++.
T Consensus 413 tdc~FSPd~k----li~TGtS~~~-~~~~g~-L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi-~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 413 TDCCFSPDDK----LILTGTSAPN-GMTAGT-LFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQI-FAGSGDGTAHVYY 485 (641)
T ss_pred CccccCCCce----EEEecccccC-CCCCce-EEEEeccceeeEEEecCCCceEEEEeecchhhhe-eeecCCCceEEEE
Confidence 2334888888 8888865321 111232 3333355555566776777779999999999888 7777789998885
Q ss_pred e
Q 007234 379 V 379 (612)
Q Consensus 379 ~ 379 (612)
-
T Consensus 486 d 486 (641)
T KOG0772|consen 486 D 486 (641)
T ss_pred C
Confidence 4
No 119
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=1.5e-20 Score=181.87 Aligned_cols=287 Identities=11% Similarity=0.138 Sum_probs=216.5
Q ss_pred CcccceeEEEEcCCCCEEEEEeCCCcEEEEECCC--CcEEEEeeccCCccccccccccccccccccceeEEEeeeccccc
Q 007234 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLK--GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (612)
Q Consensus 3 s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~ 80 (612)
-++|+++ .|+|....|.+|+.||+++||.+.. ...++.+.-...++.+..|.+.
T Consensus 213 ~~~I~sv--~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~---------------------- 268 (514)
T KOG2055|consen 213 HGGITSV--QFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPN---------------------- 268 (514)
T ss_pred cCCceEE--EecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCC----------------------
Confidence 4678766 9999999999999999999998752 3344444433444444444443
Q ss_pred ccccCCc-EEEEEECCCcEEEEEcCCCeEEEE-eccCCC-CCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEec
Q 007234 81 KRKLGSS-LLVLGTGGGDVLALAVSAGQLKWR-LSDCHP-GGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA 157 (612)
Q Consensus 81 ~~~~~~~-~l~~gs~~g~I~vwd~~~~~~~~~-~~~~h~-~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~ 157 (612)
|. .+++++...-.+.||+.+++...- ...++. ..+..+..+|++++|+.+|..|.|.+....+++.+..++-
T Consensus 269 -----G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Ki 343 (514)
T KOG2055|consen 269 -----GHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKI 343 (514)
T ss_pred -----CceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeee
Confidence 55 788888888899999999876421 112333 4577888999999999999999999999999999999884
Q ss_pred CCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCE--EEEEEeeCCcEEEEEEcCCCeEEEEEcCCCc
Q 007234 158 STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAV--RFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (612)
Q Consensus 158 ~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v--~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~ 233 (612)
.+.|..++|+.||+.|++.+ |.|++||+++..++.++.. .+.| ++++.++++.||++++ ..|.|.|||.++..
T Consensus 344 -eG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D-~G~v~gts~~~S~ng~ylA~GS-~~GiVNIYd~~s~~ 420 (514)
T KOG2055|consen 344 -EGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVD-DGSVHGTSLCISLNGSYLATGS-DSGIVNIYDGNSCF 420 (514)
T ss_pred -ccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEee-cCccceeeeeecCCCceEEecc-CcceEEEeccchhh
Confidence 67899999999999887765 9999999999999988863 3333 4577789999999987 79999999966432
Q ss_pred cc-cceeeEeecCCceeEEeEEecCCccCCCCcEEEEEec--CCcEEEEECCCcceecccCCceeEeecccccCCCCccc
Q 007234 234 KQ-SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE--TGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSA 310 (612)
Q Consensus 234 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 310 (612)
.. ...++..+..-...++.+.|+ +|++.|+.+|. +..+++-.+.+.......+. .
T Consensus 421 ~s~~PkPik~~dNLtt~Itsl~Fn-----~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~-------------~---- 478 (514)
T KOG2055|consen 421 ASTNPKPIKTVDNLTTAITSLQFN-----HDAQILAIASRVKKNALRLVHVPSCTVFSNFPT-------------S---- 478 (514)
T ss_pred ccCCCCchhhhhhhheeeeeeeeC-----cchhhhhhhhhccccceEEEeccceeeeccCCC-------------C----
Confidence 11 123556666667778888897 99999988876 55777766554443221110 0
Q ss_pred chhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceee
Q 007234 311 TAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (612)
Q Consensus 311 ~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~ 379 (612)
...-+.|+|++|||.|-++ +-|..++.+.+|.+
T Consensus 479 -----------------------------------n~~vg~vtc~aFSP~sG~l-AvGNe~grv~l~kL 511 (514)
T KOG2055|consen 479 -----------------------------------NTKVGHVTCMAFSPNSGYL-AVGNEAGRVHLFKL 511 (514)
T ss_pred -----------------------------------CCcccceEEEEecCCCceE-EeecCCCceeeEee
Confidence 1112378999999999999 99999999999976
No 120
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.87 E-value=9.3e-21 Score=191.82 Aligned_cols=222 Identities=15% Similarity=0.251 Sum_probs=184.3
Q ss_pred EEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEE
Q 007234 12 SFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV 90 (612)
Q Consensus 12 ~fsp-dg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~ 90 (612)
+|-+ ++-.+++|+.|+.+.+|...+......+++|.+.|.++.-..+ +. ++
T Consensus 65 ~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~---------------------------~~-~i 116 (745)
T KOG0301|consen 65 CYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGED---------------------------GT-LI 116 (745)
T ss_pred eeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCc---------------------------Cc-eE
Confidence 6665 4446889999999999999999999999999887775544333 33 89
Q ss_pred EEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEEEECCC
Q 007234 91 LGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSD 170 (612)
Q Consensus 91 ~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~spd 170 (612)
+|+.|.++++|-...- ... ..+|+..|+++..-|++ .++|||.|.+|++|.- ++.+++|.+|.+.|..+++-++
T Consensus 117 SgSWD~TakvW~~~~l--~~~-l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~ 190 (745)
T KOG0301|consen 117 SGSWDSTAKVWRIGEL--VYS-LQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDD 190 (745)
T ss_pred ecccccceEEecchhh--hcc-cCCcchheeeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecC
Confidence 9999999999987543 323 47999999999999987 8999999999999984 8899999999999999999988
Q ss_pred CCEEEEeC-CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCcee
Q 007234 171 GKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVF 249 (612)
Q Consensus 171 g~~l~~~~-g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 249 (612)
+.++-++. |.|++|++ +|+++.++.||++.|.++....++..++++| +|+++++|+... +...+.++...
T Consensus 191 ~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~g-EDrtlriW~~~e-------~~q~I~lPtts 261 (745)
T KOG0301|consen 191 SHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTG-EDRTLRIWKKDE-------CVQVITLPTTS 261 (745)
T ss_pred CCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEec-CCceEEEeecCc-------eEEEEecCccc
Confidence 77776666 99999999 8889999999999999999778888899998 899999999762 56677777744
Q ss_pred EEeEEecCCccCCCCcEEEEEecCCcEEEEECC
Q 007234 250 MDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (612)
Q Consensus 250 ~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~ 282 (612)
+-.+.+- ++|. +++|+.||.|+||...
T Consensus 262 iWsa~~L-----~NgD-Ivvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 262 IWSAKVL-----LNGD-IVVGGSDGRVRVFTVD 288 (745)
T ss_pred eEEEEEe-----eCCC-EEEeccCceEEEEEec
Confidence 4444443 5554 7889999999999865
No 121
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.87 E-value=1.6e-20 Score=189.92 Aligned_cols=333 Identities=13% Similarity=0.124 Sum_probs=240.4
Q ss_pred eeEEEEcCC-CC-EEEEEeCCCcEEEEECCCC--cEEEEeeccCCccccccccccccccccccceeEEEeeecccccccc
Q 007234 8 DILTSFSPA-LD-YFAICSGDARIKIWDTLKG--QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (612)
Q Consensus 8 ~l~~~fspd-g~-~las~s~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (612)
.+|+++.|+ +. .+|.|+.+..|.++.-.++ +.+.++.+|.+.+.++.|+.. ++
T Consensus 148 pLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~---~~-------------------- 204 (764)
T KOG1063|consen 148 PLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARL---GG-------------------- 204 (764)
T ss_pred hHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhcc---CC--------------------
Confidence 356677774 44 3456666777888865433 567789999999999999877 11
Q ss_pred cCCcEEEEEECCCcEEEEEcCCCe------------------------EEE------EeccCCCCCeEEEEEecCCCEEE
Q 007234 84 LGSSLLVLGTGGGDVLALAVSAGQ------------------------LKW------RLSDCHPGGVSAISFATHGSCIY 133 (612)
Q Consensus 84 ~~~~~l~~gs~~g~I~vwd~~~~~------------------------~~~------~~~~~h~~~V~~l~~sp~~~~l~ 133 (612)
+.-++++++.|..|+||.+.-+. .+. .++.||.+-|+++.|+|.+..|+
T Consensus 205 -~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LL 283 (764)
T KOG1063|consen 205 -DDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLL 283 (764)
T ss_pred -CcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhhe
Confidence 04578899999999999875332 111 23358999999999999998999
Q ss_pred EEecCCcEEEEECCCC--cee-----EEEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCC---eeEEEEecCCCC
Q 007234 134 SAGADGMVCEIDPLTG--SLL-----GKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDH---KKMQKFSGHPGA 201 (612)
Q Consensus 134 s~s~dg~v~iwd~~~~--~~~-----~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~---~~~~~~~~h~~~ 201 (612)
++|.|.++.+|...+. --+ ..+.+...+.....|+|++..+++-+ |..++|-.+.. .....+.||...
T Consensus 284 SASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~ 363 (764)
T KOG1063|consen 284 SASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDG 363 (764)
T ss_pred ecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeecccccccccc
Confidence 9999999999976543 222 22333345789999999999888877 99999983332 234456899999
Q ss_pred EEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccce-------------ee----------------------------
Q 007234 202 VRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS-------------CV---------------------------- 240 (612)
Q Consensus 202 v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~-------------~~---------------------------- 240 (612)
|..++|+|.|.+|++.| .|.+-++|-.-..+ .... |+
T Consensus 364 V~dv~W~psGeflLsvs-~DQTTRlFa~wg~q-~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv 441 (764)
T KOG1063|consen 364 VKDVDWDPSGEFLLSVS-LDQTTRLFARWGRQ-QEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFV 441 (764)
T ss_pred ceeeeecCCCCEEEEec-cccceeeecccccc-cceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHH
Confidence 99999999999999998 69888876433110 0000 00
Q ss_pred ---------------------------------E--------------------------------------------ee
Q 007234 241 ---------------------------------L--------------------------------------------AM 243 (612)
Q Consensus 241 ---------------------------------~--------------------------------------------~~ 243 (612)
+ .+
T Consensus 442 ~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KL 521 (764)
T KOG1063|consen 442 KSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKL 521 (764)
T ss_pred HHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHh
Confidence 0 00
Q ss_pred cCCceeEEeEEecCCccCCCCcEEEEEecCC-----cEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhccc
Q 007234 244 EHPAVFMDCRCIDNGGVDDAGLYVLAISETG-----VCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAK 318 (612)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~ 318 (612)
..+..-+.+++. +|+|+++++++... .|++|+..+..+.+.++.+...+.... |+|+++ ++++++
T Consensus 522 YGHGyEv~~l~~-----s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~-FSpdg~----~LLsvs 591 (764)
T KOG1063|consen 522 YGHGYEVYALAI-----SPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLA-FSPDGR----YLLSVS 591 (764)
T ss_pred ccCceeEEEEEe-----cCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEE-ECCCCc----EEEEee
Confidence 011122223333 49999999997643 689999999888887888877777555 999999 999999
Q ss_pred ccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceeeec
Q 007234 319 LQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN 381 (612)
Q Consensus 319 ~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~~~ 381 (612)
.|....+|.. ..+......|..+..|+.-||.+.|+||+.++ +|+|.|+++++|...+
T Consensus 592 RDRt~sl~~~----~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~F-aTaSRDK~VkVW~~~~ 649 (764)
T KOG1063|consen 592 RDRTVSLYEV----QEDIKDEFRFACLKAHTRIIWDCSWSPDEKYF-ATASRDKKVKVWEEPD 649 (764)
T ss_pred cCceEEeeee----ecccchhhhhccccccceEEEEcccCccccee-EEecCCceEEEEeccC
Confidence 9987776652 22222222255677899889999999999998 9999999999998744
No 122
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.87 E-value=3.3e-21 Score=194.94 Aligned_cols=242 Identities=17% Similarity=0.221 Sum_probs=203.6
Q ss_pred ccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccccc
Q 007234 5 NIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (612)
Q Consensus 5 ~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (612)
.||++ +.||+|++||+|..-|+++||++...+....+..|.+.+.++.|+.+-.
T Consensus 461 G~R~~--~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~------------------------ 514 (1080)
T KOG1408|consen 461 GFRAL--AVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVL------------------------ 514 (1080)
T ss_pred ceEEE--EECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchh------------------------
Confidence 46666 9999999999999999999999999999999999999999888887611
Q ss_pred CCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCC--CEEEEEecCCcEEEEECCCCceeEEEe-----c
Q 007234 85 GSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHG--SCIYSAGADGMVCEIDPLTGSLLGKFR-----A 157 (612)
Q Consensus 85 ~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~--~~l~s~s~dg~v~iwd~~~~~~~~~~~-----~ 157 (612)
+.++|++++.|.-|+|||+..+-.+...+.+|.+.|+++.|..+| ..+++|+.|..|.+--.+....-..|. .
T Consensus 515 ~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~ 594 (1080)
T KOG1408|consen 515 TNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTL 594 (1080)
T ss_pred hhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceecccccccc
Confidence 167899999999999999998877767778999999999998877 669999999987653332111111121 1
Q ss_pred CCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEec---CCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCC
Q 007234 158 STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSG---HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (612)
Q Consensus 158 ~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~---h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~ 232 (612)
.+..++.+++.|..+++++++ ..|+|||+++++..+.|+| |.+..-.+...|.|.|+++++ .|+++.++|..++
T Consensus 595 ~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atSc-sdktl~~~Df~sg 673 (1080)
T KOG1408|consen 595 SKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSC-SDKTLCFVDFVSG 673 (1080)
T ss_pred ccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEee-cCCceEEEEeccc
Confidence 234789999999999999998 7999999999999999964 667777888999999999998 5999999999999
Q ss_pred ccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCC
Q 007234 233 KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN 283 (612)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~ 283 (612)
+ |+..+..+...++.+.|. +|-++|++.+.||.|.||.+..
T Consensus 674 E-----cvA~m~GHsE~VTG~kF~-----nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 674 E-----CVAQMTGHSEAVTGVKFL-----NDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred h-----hhhhhcCcchheeeeeec-----ccchhheeecCCceEEEEECch
Confidence 8 556777888888999998 8999999999999999999754
No 123
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.87 E-value=9.6e-20 Score=177.97 Aligned_cols=312 Identities=14% Similarity=0.129 Sum_probs=225.0
Q ss_pred eEEEEcC--CCCEEEEE--eCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccccc
Q 007234 9 ILTSFSP--ALDYFAIC--SGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (612)
Q Consensus 9 l~~~fsp--dg~~las~--s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (612)
-|++||+ .|.+|+.. +.+..+.|||++.+......+.....+. ...|.|.
T Consensus 158 ~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~------------------~a~FHPt-------- 211 (626)
T KOG2106|consen 158 TCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVF------------------LATFHPT-------- 211 (626)
T ss_pred eeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEE------------------EEEeccC--------
Confidence 3569998 35666654 3467899999998877665544333333 3344444
Q ss_pred CCcEEEEEECCCcEEEEEcCCCeEEEEe--cc-CCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCC
Q 007234 85 GSSLLVLGTGGGDVLALAVSAGQLKWRL--SD-CHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG 161 (612)
Q Consensus 85 ~~~~l~~gs~~g~I~vwd~~~~~~~~~~--~~-~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~ 161 (612)
+..+++....|.+..|+++.+....+. ++ ....-|.|++|.++|. +++|..+|.|.+|+..+.+..+....|.+.
T Consensus 212 -d~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~gg 289 (626)
T KOG2106|consen 212 -DPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGG 289 (626)
T ss_pred -CCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCc
Confidence 445677777889999999988765432 22 2236799999999886 889999999999999888877777799999
Q ss_pred eeEEEECCCCCEEEEeC--CeEEEEEcCCCe-----------eE-----------------------------EEEecCC
Q 007234 162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHK-----------KM-----------------------------QKFSGHP 199 (612)
Q Consensus 162 v~~l~~spdg~~l~~~~--g~i~lwd~~~~~-----------~~-----------------------------~~~~~h~ 199 (612)
|.+++.-.+|.+|- |+ ..|..||-.-.+ .+ ....+|.
T Consensus 290 v~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~ 368 (626)
T KOG2106|consen 290 VFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHG 368 (626)
T ss_pred eEEEEEecCccEee-cCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecc
Confidence 99999999998777 66 789999831000 00 1224677
Q ss_pred CCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEE
Q 007234 200 GAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIW 279 (612)
Q Consensus 200 ~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iw 279 (612)
.....++.+|+...+++++ .|+.+++|+ ..+. .++.. -.....++.|. |.| .++.|+..|...+.
T Consensus 369 delwgla~hps~~q~~T~g-qdk~v~lW~--~~k~-----~wt~~-~~d~~~~~~fh-----psg-~va~Gt~~G~w~V~ 433 (626)
T KOG2106|consen 369 DELWGLATHPSKNQLLTCG-QDKHVRLWN--DHKL-----EWTKI-IEDPAECADFH-----PSG-VVAVGTATGRWFVL 433 (626)
T ss_pred cceeeEEcCCChhheeecc-CcceEEEcc--CCce-----eEEEE-ecCceeEeecc-----Ccc-eEEEeeccceEEEE
Confidence 7888899999999999998 899999999 2221 22222 12233556676 888 99999999999999
Q ss_pred ECCCcceecccCCceeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecC
Q 007234 280 YGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQ 359 (612)
Q Consensus 280 d~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~ 359 (612)
|.++...+..+.. ..++.... |+|++. .++.|+.|+.+|++. +..+...+....+..+ ..++.+.||+
T Consensus 434 d~e~~~lv~~~~d-~~~ls~v~-ysp~G~----~lAvgs~d~~iyiy~----Vs~~g~~y~r~~k~~g--s~ithLDwS~ 501 (626)
T KOG2106|consen 434 DTETQDLVTIHTD-NEQLSVVR-YSPDGA----FLAVGSHDNHIYIYR----VSANGRKYSRVGKCSG--SPITHLDWSS 501 (626)
T ss_pred ecccceeEEEEec-CCceEEEE-EcCCCC----EEEEecCCCeEEEEE----ECCCCcEEEEeeeecC--ceeEEeeecC
Confidence 9999766654444 33333333 899998 999999998887753 2121222222333333 6899999999
Q ss_pred CCceEeccccceeeecce
Q 007234 360 DGVLLPMSQSLLKSKRGR 377 (612)
Q Consensus 360 dg~~l~~s~s~d~~~~~w 377 (612)
|++++ ++-|-|--+..|
T Consensus 502 Ds~~~-~~~S~d~eiLyW 518 (626)
T KOG2106|consen 502 DSQFL-VSNSGDYEILYW 518 (626)
T ss_pred CCceE-EeccCceEEEEE
Confidence 99999 999999999999
No 124
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.86 E-value=6.4e-21 Score=185.80 Aligned_cols=275 Identities=14% Similarity=0.221 Sum_probs=205.2
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEECCCCc---EEEEeeccCCccccccccccccccccccceeEEEeeecccccccccC
Q 007234 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQ---VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLG 85 (612)
Q Consensus 9 l~~~fspdg~~las~s~dg~i~iwd~~~~~---~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 85 (612)
.++++|...+++.+|+ .|-|+|||+.... .+..+.. ..++ ...-+| ...+.
T Consensus 423 cAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdc---------l~rd------nyiRSc-kL~pd--------- 476 (705)
T KOG0639|consen 423 CAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDC---------LNRD------NYIRSC-KLLPD--------- 476 (705)
T ss_pred EEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccc---------cCcc------cceeee-EecCC---------
Confidence 4568899999999988 4689999996431 1111110 0000 111122 22222
Q ss_pred CcEEEEEECCCcEEEEEcCCCeEEEEe-ccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeE
Q 007234 86 SSLLVLGTGGGDVLALAVSAGQLKWRL-SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISC 164 (612)
Q Consensus 86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~-~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~ 164 (612)
++.|++|+.-.++.|||+......... +....-.+.+++.+||.+..++|..||.|.+||+.+...++.|++|.+.+.|
T Consensus 477 grtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGasc 556 (705)
T KOG0639|consen 477 GRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASC 556 (705)
T ss_pred CceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCcee
Confidence 788999999899999999876542111 1222346788999999999999999999999999999999999999999999
Q ss_pred EEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEe
Q 007234 165 MAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLA 242 (612)
Q Consensus 165 l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~ 242 (612)
|.+++||..|.+|+ ++|+.||+++++.+.+.. ..+.|.++..+|++.+++.+= +.+.+.|-.....++ +.
T Consensus 557 Idis~dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGM-ens~vevlh~skp~k------yq 628 (705)
T KOG0639|consen 557 IDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGM-ENSNVEVLHTSKPEK------YQ 628 (705)
T ss_pred EEecCCCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeec-ccCcEEEEecCCccc------ee
Confidence 99999999999999 899999999987765543 467899999999999999874 788777776655542 33
Q ss_pred ecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhcccccce
Q 007234 243 MEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDI 322 (612)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~ 322 (612)
+..+...+-.+.|. +-|+++++.+.|+.+..|...-|..+...+
T Consensus 629 lhlheScVLSlKFa-----~cGkwfvStGkDnlLnawrtPyGasiFqsk------------------------------- 672 (705)
T KOG0639|consen 629 LHLHESCVLSLKFA-----YCGKWFVSTGKDNLLNAWRTPYGASIFQSK------------------------------- 672 (705)
T ss_pred ecccccEEEEEEec-----ccCceeeecCchhhhhhccCccccceeecc-------------------------------
Confidence 44455566667787 899999999999999999755443322100
Q ss_pred ecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceee
Q 007234 323 VKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (612)
Q Consensus 323 ~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~ 379 (612)
-.+.|.++.+|.|.+|+ +|||-|+...++++
T Consensus 673 -------------------------E~SsVlsCDIS~ddkyI-VTGSGdkkATVYeV 703 (705)
T KOG0639|consen 673 -------------------------ESSSVLSCDISFDDKYI-VTGSGDKKATVYEV 703 (705)
T ss_pred -------------------------ccCcceeeeeccCceEE-EecCCCcceEEEEE
Confidence 01268899999999999 99998888777765
No 125
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=2.9e-22 Score=203.30 Aligned_cols=210 Identities=15% Similarity=0.195 Sum_probs=181.2
Q ss_pred CcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEE
Q 007234 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCM 165 (612)
Q Consensus 86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l 165 (612)
.+.++.|+.+..+-+|.+..-..+..+ .+|.++|.++.|+++..+|++|+.+|+|++||+..++.++++.+|...+.++
T Consensus 40 ~r~~~~Gg~~~k~~L~~i~kp~~i~S~-~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv 118 (825)
T KOG0267|consen 40 SRSLVTGGEDEKVNLWAIGKPNAITSL-TGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSV 118 (825)
T ss_pred ceeeccCCCceeeccccccCCchhhee-eccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCccee
Confidence 677889999999999998876666554 6899999999999999999999999999999999999999999999999999
Q ss_pred EECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEee
Q 007234 166 AVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAM 243 (612)
Q Consensus 166 ~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~ 243 (612)
.|+|-+.+.+.|+ +.+++||.+..-+...+.+|...|..+.|+|+|+++++++ +|..++|||+..++.. ..+
T Consensus 119 ~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~-ed~tvki~d~~agk~~-----~ef 192 (825)
T KOG0267|consen 119 DFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGG-EDNTVKIWDLTAGKLS-----KEF 192 (825)
T ss_pred eeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccC-Ccceeeeecccccccc-----ccc
Confidence 9999999998888 8999999998888999999999999999999999999998 6999999999888744 334
Q ss_pred cCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCc
Q 007234 244 EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQK 308 (612)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 308 (612)
..+...+..+.|. |..-+++.|+.|+++++||+++.+.+...++....+.+.. |.++++
T Consensus 193 ~~~e~~v~sle~h-----p~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~-fn~~~~ 251 (825)
T KOG0267|consen 193 KSHEGKVQSLEFH-----PLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLA-FNPDGK 251 (825)
T ss_pred ccccccccccccC-----chhhhhccCCCCceeeeeccceeEEeeccCCccCCceeee-ecCCce
Confidence 4334444445565 7778899999999999999999999887777766666554 777776
No 126
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.86 E-value=5.6e-19 Score=177.42 Aligned_cols=239 Identities=11% Similarity=0.093 Sum_probs=172.7
Q ss_pred EEEcCCCCEE-EEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEE
Q 007234 11 TSFSPALDYF-AICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (612)
Q Consensus 11 ~~fspdg~~l-as~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (612)
++|+|||+.+ ++++.++.|++||..+++....+..+.. ...+.|.+. ++.+
T Consensus 36 l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-------------------~~~~~~~~~---------g~~l 87 (300)
T TIGR03866 36 ITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-------------------PELFALHPN---------GKIL 87 (300)
T ss_pred eEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-------------------ccEEEECCC---------CCEE
Confidence 4999999976 5667789999999999988776643211 123344433 4555
Q ss_pred EE-EECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCC-cEEEEECCCCceeEEEecCCCCeeEEEE
Q 007234 90 VL-GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADG-MVCEIDPLTGSLLGKFRASTKGISCMAV 167 (612)
Q Consensus 90 ~~-gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg-~v~iwd~~~~~~~~~~~~~~~~v~~l~~ 167 (612)
++ +..++.|++||+.+++.+..+. +...+.+++|+|+|+.+++++.++ .+..||..+++....+.. ...+.+++|
T Consensus 88 ~~~~~~~~~l~~~d~~~~~~~~~~~--~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~ 164 (300)
T TIGR03866 88 YIANEDDNLVTVIDIETRKVLAEIP--VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEF 164 (300)
T ss_pred EEEcCCCCeEEEEECCCCeEEeEee--CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEE
Confidence 44 4568899999999988776653 234578899999999999888765 567789988877665543 334578999
Q ss_pred CCCCCEEEEeC---CeEEEEEcCCCeeEEEEecCCC-------CEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccc
Q 007234 168 SSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHPG-------AVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA 237 (612)
Q Consensus 168 spdg~~l~~~~---g~i~lwd~~~~~~~~~~~~h~~-------~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~ 237 (612)
+|+|+++++++ +.|++||+++++.+..+..+.. ....++|+|++++++.+...++.+.+||+.+++..
T Consensus 165 s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~-- 242 (300)
T TIGR03866 165 TADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVL-- 242 (300)
T ss_pred CCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEE--
Confidence 99999886543 8999999999988776653321 23468899999986655435778999999876543
Q ss_pred eeeEeecCCceeEEeEEecCCccCCCCcEEEEEe-cCCcEEEEECCCcceecccC
Q 007234 238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQNIEELRNTK 291 (612)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s-~dg~i~iwd~~~~~~~~~~~ 291 (612)
....+.. .+..+.|+ |+|++|++++ .+|.|.+||+.+++.+..++
T Consensus 243 ---~~~~~~~-~~~~~~~~-----~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~ 288 (300)
T TIGR03866 243 ---DYLLVGQ-RVWQLAFT-----PDEKYLLTTNGVSNDVSVIDVAALKVIKSIK 288 (300)
T ss_pred ---EEEEeCC-CcceEEEC-----CCCCEEEEEcCCCCeEEEEECCCCcEEEEEE
Confidence 1112222 34456676 9999998874 58999999999988766443
No 127
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=3.8e-21 Score=196.82 Aligned_cols=237 Identities=15% Similarity=0.220 Sum_probs=184.5
Q ss_pred EEcC-CCCEEEEEeCCCcEEEEECCC---CcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCc
Q 007234 12 SFSP-ALDYFAICSGDARIKIWDTLK---GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (612)
Q Consensus 12 ~fsp-dg~~las~s~dg~i~iwd~~~---~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (612)
.|+. +.++||+++..|.|.+||+.. .+.+..|..|. +...++.|.+.. ..
T Consensus 94 kW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~------------------Rs~~~ldfh~te--------p~ 147 (839)
T KOG0269|consen 94 KWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHE------------------RSANKLDFHSTE--------PN 147 (839)
T ss_pred ccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhc------------------cceeeeeeccCC--------cc
Confidence 4543 467999999999999999976 44555565444 345567777666 67
Q ss_pred EEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEec-CCCEEEEEecCCcEEEEECCCC-ceeEEEecCCCCeeEE
Q 007234 88 LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTG-SLLGKFRASTKGISCM 165 (612)
Q Consensus 88 ~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp-~~~~l~s~s~dg~v~iwd~~~~-~~~~~~~~~~~~v~~l 165 (612)
+|++|+.||.|++||++..+-...+ .+....|.++.|+| .+..|+++...|.+++||++.. ++...+.+|.++|.|+
T Consensus 148 iliSGSQDg~vK~~DlR~~~S~~t~-~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~ 226 (839)
T KOG0269|consen 148 ILISGSQDGTVKCWDLRSKKSKSTF-RSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCL 226 (839)
T ss_pred EEEecCCCceEEEEeeecccccccc-cccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEE
Confidence 9999999999999999998877666 45788999999999 5678999999999999999865 5677789999999999
Q ss_pred EECCCCCEEEEeC--CeEEEEEcCCCeeEEEEec-CCCCEEEEEEeeCCcEE-EEEEc-CCCeEEEEEcCCCccccceee
Q 007234 166 AVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSG-HPGAVRFMTFSDNGKYV-LSSAV-GERYIALWRTDGVKKQSASCV 240 (612)
Q Consensus 166 ~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~-h~~~v~~l~~sp~~~~l-~s~s~-~d~~i~vwd~~~~~~~~~~~~ 240 (612)
.|+|++.+||+|+ +.|+|||+.+++......- ...+|.++.|-|..++. ++++. .|-.|+|||++-.-.. .
T Consensus 227 nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP----~ 302 (839)
T KOG0269|consen 227 NWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIP----Y 302 (839)
T ss_pred eecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeecccccc----c
Confidence 9999999999999 8999999987654333322 35789999999987754 44332 3678999999876543 3
Q ss_pred EeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCC
Q 007234 241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN 283 (612)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~ 283 (612)
..+..+...++.++|. +.|...+.+++.||++..-..++
T Consensus 303 ~t~~eH~~~vt~i~W~----~~d~~~l~s~sKD~tv~qh~~kn 341 (839)
T KOG0269|consen 303 ATFLEHTDSVTGIAWD----SGDRINLWSCSKDGTVLQHLFKN 341 (839)
T ss_pred eeeeccCccccceecc----CCCceeeEeecCccHHHHhhhhc
Confidence 4455666667777776 35677899999999886554433
No 128
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.86 E-value=3.2e-20 Score=179.89 Aligned_cols=245 Identities=12% Similarity=0.127 Sum_probs=184.0
Q ss_pred CcEEEEEECCCcEEEEEcCCCeEEEE---------eccCCCCCeEEEEEecCC-CEEEEEecCCcEEEEECCCCc-----
Q 007234 86 SSLLVLGTGGGDVLALAVSAGQLKWR---------LSDCHPGGVSAISFATHG-SCIYSAGADGMVCEIDPLTGS----- 150 (612)
Q Consensus 86 ~~~l~~gs~~g~I~vwd~~~~~~~~~---------~~~~h~~~V~~l~~sp~~-~~l~s~s~dg~v~iwd~~~~~----- 150 (612)
..+|++++.++.|+|||.....-... .+.+|...-++++|++.. ..|++|+.|++|++||+....
T Consensus 137 p~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~ 216 (422)
T KOG0264|consen 137 PNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKV 216 (422)
T ss_pred CcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCcc
Confidence 67888899999999999865322111 235788888899999843 469999999999999987542
Q ss_pred --eeEEEecCCCCeeEEEECCCC-CEEEEeC--CeEEEEEcC--CCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCe
Q 007234 151 --LLGKFRASTKGISCMAVSSDG-KMLATAA--GQLKTFNCS--DHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERY 223 (612)
Q Consensus 151 --~~~~~~~~~~~v~~l~~spdg-~~l~~~~--g~i~lwd~~--~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~ 223 (612)
+...+.+|...|..++|+|-. .++++++ +.+.|||++ +.++.....+|.++|.|++|+|-+.+++++++.|++
T Consensus 217 ~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~t 296 (422)
T KOG0264|consen 217 VDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKT 296 (422)
T ss_pred ccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCc
Confidence 345688899999999999954 4455555 899999999 566677788999999999999977666555557999
Q ss_pred EEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeeccccc
Q 007234 224 IALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVN 303 (612)
Q Consensus 224 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 303 (612)
|.+||+++-+. +...+..+...+..+.|++ .....|++++.|+++.+||+..-..-+. .. .
T Consensus 297 V~LwDlRnL~~----~lh~~e~H~dev~~V~WSP----h~etvLASSg~D~rl~vWDls~ig~eq~---~e--------d 357 (422)
T KOG0264|consen 297 VALWDLRNLNK----PLHTFEGHEDEVFQVEWSP----HNETVLASSGTDRRLNVWDLSRIGEEQS---PE--------D 357 (422)
T ss_pred EEEeechhccc----CceeccCCCcceEEEEeCC----CCCceeEecccCCcEEEEeccccccccC---hh--------h
Confidence 99999998764 3566677777777788872 3456788889999999999854322110 00 0
Q ss_pred CCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceee
Q 007234 304 SKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (612)
Q Consensus 304 s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~ 379 (612)
..++. ..+++ .-.||...|..+.|.|...++++|.++|+++-+|..
T Consensus 358 a~dgp-------------------pEllF-----------~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~ 403 (422)
T KOG0264|consen 358 AEDGP-------------------PELLF-----------IHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQM 403 (422)
T ss_pred hccCC-------------------cceeE-----------EecCcccccccccCCCCCCeEEEEecCCceEEEeec
Confidence 00100 00011 334788899999999999998899999999999986
No 129
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=2.6e-19 Score=181.18 Aligned_cols=241 Identities=13% Similarity=0.131 Sum_probs=188.9
Q ss_pred CcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccc
Q 007234 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (612)
Q Consensus 3 s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (612)
.+.|.+| +|++.+ .|.+.+.+|.|.-||+.+++....++..++.+.+++.++.
T Consensus 69 drsIE~L--~W~e~~-RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~------------------------ 121 (691)
T KOG2048|consen 69 DRSIESL--AWAEGG-RLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPE------------------------ 121 (691)
T ss_pred CCceeeE--EEccCC-eEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCc------------------------
Confidence 3567777 899655 5667788999999999999999999887777776666665
Q ss_pred ccCCcEEEEEECCCcEEEEEcCCCeEEEE-eccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEe-----
Q 007234 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWR-LSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR----- 156 (612)
Q Consensus 83 ~~~~~~l~~gs~~g~I~vwd~~~~~~~~~-~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~----- 156 (612)
+..+++|+.||.+..++...+..... .+...++.|.+++|+|++..+++|+.||.|++||..++..+....
T Consensus 122 ---~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~ 198 (691)
T KOG2048|consen 122 ---NTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDR 198 (691)
T ss_pred ---cceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccc
Confidence 78899999999888888888876533 334456899999999999999999999999999999998776221
Q ss_pred c---CCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCC
Q 007234 157 A---STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (612)
Q Consensus 157 ~---~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~ 231 (612)
. ...-|+++.|-.++ .+++|+ |+|.+||...+.+++.+..|.+.|.+++..+++.+++++| -|+.|..+...+
T Consensus 199 l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaG-vd~~ii~~~~~~ 276 (691)
T KOG2048|consen 199 LSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAG-VDPKIIQYSLTT 276 (691)
T ss_pred cccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEcc-CCCceEEEEecC
Confidence 1 12257788887665 566676 9999999999999999999999999999999999999998 699998888877
Q ss_pred CccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCC
Q 007234 232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN 283 (612)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~ 283 (612)
.+.. ........++...+.+++.. + ..+++|+.|+.+.+-....
T Consensus 277 ~~~~-wv~~~~r~~h~hdvrs~av~-----~--~~l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 277 NKSE-WVINSRRDLHAHDVRSMAVI-----E--NALISGGRDFTLAICSSRE 320 (691)
T ss_pred Cccc-eeeeccccCCcccceeeeee-----c--ceEEecceeeEEEEccccc
Confidence 6542 12222333455555555554 3 3899999999998876544
No 130
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=4.1e-20 Score=179.40 Aligned_cols=198 Identities=20% Similarity=0.239 Sum_probs=165.4
Q ss_pred CcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECC---------CCceeEEEe
Q 007234 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL---------TGSLLGKFR 156 (612)
Q Consensus 86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~---------~~~~~~~~~ 156 (612)
|.+++.|+-.|+|++|.+.+|..+..+ .+|-..|+++.|+.||.+|+|||.||.|.+|++. +-++++.|.
T Consensus 93 G~~l~ag~i~g~lYlWelssG~LL~v~-~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~ 171 (476)
T KOG0646|consen 93 GYFLLAGTISGNLYLWELSSGILLNVL-SAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFS 171 (476)
T ss_pred ceEEEeecccCcEEEEEeccccHHHHH-HhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeec
Confidence 788888889999999999999998655 7899999999999999999999999999999763 346788899
Q ss_pred cCCCCeeEEEECCC--CCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCC
Q 007234 157 ASTKGISCMAVSSD--GKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (612)
Q Consensus 157 ~~~~~v~~l~~spd--g~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~ 232 (612)
.|.-+|+.+...+. ...+++++ .++++||+..+..+.++. ....+.+++..|.++.++.|+ .+|.|.+.++...
T Consensus 172 ~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt-~~G~I~~~~~~~~ 249 (476)
T KOG0646|consen 172 DHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGT-EEGKIFQNLLFKL 249 (476)
T ss_pred cCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecC-CcceEEeeehhcC
Confidence 99999999998765 35677777 899999999999988886 567899999999999988887 7999998887654
Q ss_pred cccc-----------ceeeEeecCCc--eeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccC
Q 007234 233 KKQS-----------ASCVLAMEHPA--VFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK 291 (612)
Q Consensus 233 ~~~~-----------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~ 291 (612)
.... ...+..+..+. ..+++++.+ -||..|++|+.||.++|||+.+.+.+++..
T Consensus 250 ~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais-----~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~ 316 (476)
T KOG0646|consen 250 SGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIS-----TDGTLLLSGDEDGKVCVWDIYSKQCIRTLQ 316 (476)
T ss_pred CcccccccccccccccceeeeeccccCCcceeEEEEe-----cCccEEEeeCCCCCEEEEecchHHHHHHHh
Confidence 3111 11222233333 378888888 899999999999999999999998887665
No 131
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.85 E-value=5.6e-20 Score=184.46 Aligned_cols=291 Identities=18% Similarity=0.208 Sum_probs=201.3
Q ss_pred ccceeEEEEcCCC---CEEEEEeCCCcEEEEECCCCcEE------EEeeccCCccccccccccccccccccceeEEEeee
Q 007234 5 NIRDILTSFSPAL---DYFAICSGDARIKIWDTLKGQVQ------TEFADIASTETTSLYGNRLEREHLSVDYTCMKWLS 75 (612)
Q Consensus 5 ~V~~l~~~fspdg---~~las~s~dg~i~iwd~~~~~~~------~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~ 75 (612)
++.-+++.|++.. ..||.+..||.|.++|....... ..+..|.. .+..+.|.+
T Consensus 49 p~pPf~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~n------------------AifDl~wap 110 (720)
T KOG0321|consen 49 PVPPFADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKN------------------AIFDLKWAP 110 (720)
T ss_pred CCCCccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccc------------------eeEeeccCC
Confidence 3444567888743 47889999999999998755433 22223333 344566666
Q ss_pred cccccccccCCcEEEEEECCCcEEEEEcCCCeEEEE-eccCCCCCeEEEEEecCCC-EEEEEecCCcEEEEECCCCc---
Q 007234 76 VDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWR-LSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTGS--- 150 (612)
Q Consensus 76 ~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~-~~~~h~~~V~~l~~sp~~~-~l~s~s~dg~v~iwd~~~~~--- 150 (612)
. ...|++++.|.++++||+.++.+... +..+|...|.+++|.|.++ .|++|+.||.|.+||++-..
T Consensus 111 g---------e~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~ 181 (720)
T KOG0321|consen 111 G---------ESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDA 181 (720)
T ss_pred C---------ceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhh
Confidence 2 67899999999999999999988754 3468999999999999654 58899999999999986321
Q ss_pred ------------------------eeEEEecCCCCeeE---EEECCCCCEEEEeC---CeEEEEEcCCCeeE--------
Q 007234 151 ------------------------LLGKFRASTKGISC---MAVSSDGKMLATAA---GQLKTFNCSDHKKM-------- 192 (612)
Q Consensus 151 ------------------------~~~~~~~~~~~v~~---l~~spdg~~l~~~~---g~i~lwd~~~~~~~-------- 192 (612)
.+...+++...|.+ +.+..|...||+++ +.|++||++.....
T Consensus 182 ~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~ 261 (720)
T KOG0321|consen 182 LEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGS 261 (720)
T ss_pred HHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcc
Confidence 12222334444555 56667899999887 79999999876432
Q ss_pred EEEecC---CCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEE
Q 007234 193 QKFSGH---PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLA 269 (612)
Q Consensus 193 ~~~~~h---~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 269 (612)
..+..| .-.+.++.....|.+|++.+ .|+.|+.|++...... .+..+.+.-. ..++...+.+|++.++++
T Consensus 262 ~~~~t~skrs~G~~nL~lDssGt~L~AsC-tD~sIy~ynm~s~s~s---P~~~~sg~~~---~sf~vks~lSpd~~~l~S 334 (720)
T KOG0321|consen 262 DKYPTHSKRSVGQVNLILDSSGTYLFASC-TDNSIYFYNMRSLSIS---PVAEFSGKLN---SSFYVKSELSPDDCSLLS 334 (720)
T ss_pred cCccCcccceeeeEEEEecCCCCeEEEEe-cCCcEEEEeccccCcC---chhhccCccc---ceeeeeeecCCCCceEec
Confidence 222333 23466677777789998887 5999999999876543 2222222111 111112223499999999
Q ss_pred EecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccC
Q 007234 270 ISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNS 349 (612)
Q Consensus 270 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~ 349 (612)
|+.|...++|.+.+.+.-- . .+.+|.
T Consensus 335 gSsd~~ayiw~vs~~e~~~------------------------~------------------------------~l~Ght 360 (720)
T KOG0321|consen 335 GSSDEQAYIWVVSSPEAPP------------------------A------------------------------LLLGHT 360 (720)
T ss_pred cCCCcceeeeeecCccCCh------------------------h------------------------------hhhCcc
Confidence 9999999999876543300 0 244677
Q ss_pred CCeEEEEecCCCceEeccccceeeecceeeecce
Q 007234 350 GEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNRV 383 (612)
Q Consensus 350 ~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~~~~~ 383 (612)
.+|++++|.|....=++++|+|...++|++.+.+
T Consensus 361 ~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l 394 (720)
T KOG0321|consen 361 REVTTVRWLPSATTPVATCSDDFRVKIWRLSNGL 394 (720)
T ss_pred eEEEEEeeccccCCCceeeccCcceEEEeccCch
Confidence 7888888887554434788999999999985543
No 132
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=5e-20 Score=170.06 Aligned_cols=188 Identities=14% Similarity=0.208 Sum_probs=159.3
Q ss_pred CcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEEC------CC-----------
Q 007234 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDP------LT----------- 148 (612)
Q Consensus 86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~------~~----------- 148 (612)
...+.+++.|.+.+||.+++|.|+.++ .+|.+.|+++.|++.+.++++++.|++-.||.. ..
T Consensus 160 qpi~gtASADhTA~iWs~Esg~CL~~Y-~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEe 238 (481)
T KOG0300|consen 160 QPICGTASADHTARIWSLESGACLATY-TGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEE 238 (481)
T ss_pred CcceeecccccceeEEeeccccceeee-cccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchh
Confidence 557888999999999999999999888 689999999999999999999999999999961 11
Q ss_pred -------------------C----ceeEEEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEE
Q 007234 149 -------------------G----SLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVR 203 (612)
Q Consensus 149 -------------------~----~~~~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~ 203 (612)
+ -++..+.+|...|.+..|-..|+.+++++ .+..+||++++.++..+.||....+
T Consensus 239 E~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELt 318 (481)
T KOG0300|consen 239 EEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELT 318 (481)
T ss_pred hhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhcc
Confidence 0 13556788889999999999999999999 7999999999999999999999999
Q ss_pred EEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCC
Q 007234 204 FMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN 283 (612)
Q Consensus 204 ~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~ 283 (612)
.++-+|..+++++++ .|.+.++||++..-. .+..+..+...++.+.|. .+..+++|+.|.+|++||+++
T Consensus 319 HcstHptQrLVvTsS-rDtTFRLWDFReaI~----sV~VFQGHtdtVTS~vF~------~dd~vVSgSDDrTvKvWdLrN 387 (481)
T KOG0300|consen 319 HCSTHPTQRLVVTSS-RDTTFRLWDFREAIQ----SVAVFQGHTDTVTSVVFN------TDDRVVSGSDDRTVKVWDLRN 387 (481)
T ss_pred ccccCCcceEEEEec-cCceeEeccchhhcc----eeeeecccccceeEEEEe------cCCceeecCCCceEEEeeecc
Confidence 999999998888876 899999999984321 344555566666667774 456789999999999999876
Q ss_pred cc
Q 007234 284 IE 285 (612)
Q Consensus 284 ~~ 285 (612)
..
T Consensus 388 MR 389 (481)
T KOG0300|consen 388 MR 389 (481)
T ss_pred cc
Confidence 53
No 133
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=3.1e-20 Score=186.70 Aligned_cols=234 Identities=15% Similarity=0.212 Sum_probs=191.5
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCC--cEEEEeeccCCccccccc-cccccccccccceeEEEeeecccccccccCCcE
Q 007234 12 SFSPALDYFAICSGDARIKIWDTLKG--QVQTEFADIASTETTSLY-GNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (612)
Q Consensus 12 ~fspdg~~las~s~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~-s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (612)
+..-+|+-|+++|.|-+|++|+...+ -+..++..|...|.++++ ... ..+
T Consensus 80 iL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~---------------------------~~l 132 (735)
T KOG0308|consen 80 ILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKN---------------------------NEL 132 (735)
T ss_pred HhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccC---------------------------cee
Confidence 45567888999999999999999887 577888888888887777 444 778
Q ss_pred EEEEECCCcEEEEEcCCCeE--E--------EEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecC
Q 007234 89 LVLGTGGGDVLALAVSAGQL--K--------WRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS 158 (612)
Q Consensus 89 l~~gs~~g~I~vwd~~~~~~--~--------~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~ 158 (612)
+++|+-|+.|.+||++++.. + ..+..++..+|++++.++.|..+++|+..+.+++||.++++.+..+++|
T Consensus 133 vaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGH 212 (735)
T KOG0308|consen 133 VASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGH 212 (735)
T ss_pred EEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeecc
Confidence 99999999999999998722 2 1222378899999999999989999999999999999999999999999
Q ss_pred CCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCcccc
Q 007234 159 TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS 236 (612)
Q Consensus 159 ~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~ 236 (612)
...|.++..++||+.+++++ |+|++||+...+++.++..|...|.++..+|+-.++++|+ .||.|..=|+++....
T Consensus 213 TdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~-rd~~i~~Tdl~n~~~~- 290 (735)
T KOG0308|consen 213 TDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGG-RDGNIYRTDLRNPAKS- 290 (735)
T ss_pred ccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecC-CCCcEEecccCCchhh-
Confidence 99999999999999999998 9999999999999999999999999999999999999987 7999999999885332
Q ss_pred ceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCC
Q 007234 237 ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN 283 (612)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~ 283 (612)
..++.-+++..-+. .. ....-+-+++.|+.|+-|..+-
T Consensus 291 -tlick~daPv~~l~---~~-----~~~~~~WvtTtds~I~rW~~~~ 328 (735)
T KOG0308|consen 291 -TLICKEDAPVLKLH---LH-----EHDNSVWVTTTDSSIKRWKLEP 328 (735)
T ss_pred -eEeecCCCchhhhh---hc-----cccCCceeeeccccceecCCcc
Confidence 13333333332221 11 2223347778889999997543
No 134
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=2.1e-18 Score=174.56 Aligned_cols=242 Identities=12% Similarity=0.166 Sum_probs=189.5
Q ss_pred CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (612)
Q Consensus 2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (612)
.+++|. |+|||.+.+.||.+-.||.|.||++..+=+...+ ..|+.......++|..
T Consensus 24 ~Ps~I~--slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~v----------------i~g~~drsIE~L~W~e------ 79 (691)
T KOG2048|consen 24 KPSEIV--SLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPV----------------IHGPEDRSIESLAWAE------ 79 (691)
T ss_pred eccceE--EEEEeccCCceeeeccCCcEEEEccCCCceeeEE----------------EecCCCCceeeEEEcc------
Confidence 467885 5599999999999999999999999876544332 2245567788899983
Q ss_pred cccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEE--EecCC
Q 007234 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK--FRAST 159 (612)
Q Consensus 82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~--~~~~~ 159 (612)
+..|++.+.+|.|.-||+.+++.+..+ +...+.|++++.+|.+..++.|+.||.+..++...++.... +...+
T Consensus 80 ----~~RLFS~g~sg~i~EwDl~~lk~~~~~-d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~ 154 (691)
T KOG2048|consen 80 ----GGRLFSSGLSGSITEWDLHTLKQKYNI-DSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQK 154 (691)
T ss_pred ----CCeEEeecCCceEEEEecccCceeEEe-cCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeeccccc
Confidence 667999999999999999999998777 56789999999999999999999999888888877765544 44456
Q ss_pred CCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEe--------cCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEc
Q 007234 160 KGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS--------GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRT 229 (612)
Q Consensus 160 ~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~--------~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~ 229 (612)
+.+.+++|+|++..+++|+ |.|++||..++..+.... +...-|.++.|-.++. ++++. ..|+|++||.
T Consensus 155 sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~t-I~sgD-S~G~V~FWd~ 232 (691)
T KOG2048|consen 155 SRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDST-IASGD-SAGTVTFWDS 232 (691)
T ss_pred ceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCc-EEEec-CCceEEEEcc
Confidence 7999999999999999998 889999999987665221 1334477888887774 67765 5899999999
Q ss_pred CCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCc
Q 007234 230 DGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (612)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~ 284 (612)
..+... .....+...+-+++.. +++.++++++.|+.|..|...+.
T Consensus 233 ~~gTLi-----qS~~~h~adVl~Lav~-----~~~d~vfsaGvd~~ii~~~~~~~ 277 (691)
T KOG2048|consen 233 IFGTLI-----QSHSCHDADVLALAVA-----DNEDRVFSAGVDPKIIQYSLTTN 277 (691)
T ss_pred cCcchh-----hhhhhhhcceeEEEEc-----CCCCeEEEccCCCceEEEEecCC
Confidence 998755 2223233333444454 78899999999999988876554
No 135
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.84 E-value=4.7e-19 Score=179.47 Aligned_cols=344 Identities=13% Similarity=0.109 Sum_probs=223.8
Q ss_pred cceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccC
Q 007234 6 IRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLG 85 (612)
Q Consensus 6 V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 85 (612)
|.++ .|+|.+..|.+++.|.++.+|...+..-+..-..--+.+ ++....+-...|++.
T Consensus 270 V~sv--~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~-----------gg~a~GF~g~lw~~n--------- 327 (764)
T KOG1063|consen 270 VYSV--WWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEV-----------GGSAGGFWGGLWSPN--------- 327 (764)
T ss_pred eEEE--EEccchhhheecccCcceEEEecCCccceEEEEEEeecc-----------cccccceeeEEEcCC---------
Confidence 4445 999999999999999999999876553222211111100 111223334556554
Q ss_pred CcEEEEEECCCcEEEEEcCCC-e-EEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECC----------C-----
Q 007234 86 SSLLVLGTGGGDVLALAVSAG-Q-LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL----------T----- 148 (612)
Q Consensus 86 ~~~l~~gs~~g~I~vwd~~~~-~-~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~----------~----- 148 (612)
++.++.-+..|..++|..... . .......||.+.|.++.|+|.|.+|+++|.|.+-|+|-.- .
T Consensus 328 ~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHG 407 (764)
T KOG1063|consen 328 SNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHG 407 (764)
T ss_pred CCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeeccccccc
Confidence 677888899999999983322 1 1223447999999999999999999999999888876321 0
Q ss_pred -----------------C---ceeEEEe----------------------------------------------------
Q 007234 149 -----------------G---SLLGKFR---------------------------------------------------- 156 (612)
Q Consensus 149 -----------------~---~~~~~~~---------------------------------------------------- 156 (612)
| +.++.|+
T Consensus 408 yDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~ 487 (764)
T KOG1063|consen 408 YDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAV 487 (764)
T ss_pred ccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccce
Confidence 0 0111111
Q ss_pred -----------------------------------cCCCCeeEEEECCCCCEEEEeC-------CeEEEEEcCCCeeEEE
Q 007234 157 -----------------------------------ASTKGISCMAVSSDGKMLATAA-------GQLKTFNCSDHKKMQK 194 (612)
Q Consensus 157 -----------------------------------~~~~~v~~l~~spdg~~l~~~~-------g~i~lwd~~~~~~~~~ 194 (612)
+|...|++++.+|+|+++|++. ..|++|+..+-..+..
T Consensus 488 ~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~ 567 (764)
T KOG1063|consen 488 CAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQE 567 (764)
T ss_pred eeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhhe
Confidence 4566889999999999999987 3799999999888889
Q ss_pred EecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCC
Q 007234 195 FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG 274 (612)
Q Consensus 195 ~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg 274 (612)
+.+|.-.|+.++|||||++|++.+ .|+++.+|.......... .......+..++-.+.|+ |++++++|+|.|+
T Consensus 568 L~~HsLTVT~l~FSpdg~~LLsvs-RDRt~sl~~~~~~~~~e~-~fa~~k~HtRIIWdcsW~-----pde~~FaTaSRDK 640 (764)
T KOG1063|consen 568 LEGHSLTVTRLAFSPDGRYLLSVS-RDRTVSLYEVQEDIKDEF-RFACLKAHTRIIWDCSWS-----PDEKYFATASRDK 640 (764)
T ss_pred ecccceEEEEEEECCCCcEEEEee-cCceEEeeeeecccchhh-hhccccccceEEEEcccC-----cccceeEEecCCc
Confidence 999999999999999999999998 799999999855433211 111244566666666666 9999999999999
Q ss_pred cEEEEECCCc--ceecccC--CceeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccC----ceEEEee
Q 007234 275 VCYIWYGQNI--EELRNTK--ATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLK----PSFQKIL 346 (612)
Q Consensus 275 ~i~iwd~~~~--~~~~~~~--~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~----~~~~~~~ 346 (612)
.|++|..... +.+..+. +....++.......+.......++.|-..|.+.++.-...-..++... .......
T Consensus 641 ~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~ 720 (764)
T KOG1063|consen 641 KVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATI 720 (764)
T ss_pred eEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecccccccccceeeeecccccccc
Confidence 9999998776 3332211 111122222211222222122444454444443332110000011100 1111233
Q ss_pred ccCCCeEEEEecCC----------CceEeccccceeeecceee
Q 007234 347 VNSGEDINLNCSQD----------GVLLPMSQSLLKSKRGRYV 379 (612)
Q Consensus 347 ~h~~~v~~l~~S~d----------g~~l~~s~s~d~~~~~w~~ 379 (612)
.|...|..+.|+|- ...| ++|++|.+.|+.++
T Consensus 721 ~~~~aV~rl~w~p~~~~~~~~~~~~l~l-a~~g~D~~vri~nv 762 (764)
T KOG1063|consen 721 GPDSAVNRLLWRPTCSDDWVEDKEWLNL-AVGGDDESVRIFNV 762 (764)
T ss_pred ChHHhhheeEeccccccccccccceeEE-eeecccceeEEeec
Confidence 57778999999964 2445 88889999998875
No 136
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.84 E-value=2.7e-19 Score=169.19 Aligned_cols=213 Identities=15% Similarity=0.249 Sum_probs=152.4
Q ss_pred ccceeEEEEcC--CCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccc-cccccccceeEEEeeecccccc
Q 007234 5 NIRDILTSFSP--ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRL-EREHLSVDYTCMKWLSVDRKKK 81 (612)
Q Consensus 5 ~V~~l~~~fsp--dg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~-~~~~~~~~~~~~~w~~~~~~~~ 81 (612)
.++.+ .-++ +..+.|+=+..|.|.|||+... +..+......+....+.+-+ ..+|. ...-.+.|.|..
T Consensus 153 ~~NRv--r~~~~~~~~~~aswse~G~V~Vw~l~~~--l~~l~~~~~~~~~s~~~Pl~t~~ghk-~EGy~LdWSp~~---- 223 (440)
T KOG0302|consen 153 GINRV--RVSRLGNEVLCASWSENGRVQVWDLAPH--LNALSEPGLEVKDSEFRPLFTFNGHK-GEGYGLDWSPIK---- 223 (440)
T ss_pred cccee--eecccCCcceeeeecccCcEEEEEchhh--hhhhcCccccccccccCceEEecccC-ccceeeeccccc----
Confidence 34444 4444 3446666677899999998532 11121111111111111111 11443 344567888754
Q ss_pred cccCCcEEEEEECCCcEEEEEcCCCeEEE--EeccCCCCCeEEEEEecC-CCEEEEEecCCcEEEEECCCCc---eeEEE
Q 007234 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKW--RLSDCHPGGVSAISFATH-GSCIYSAGADGMVCEIDPLTGS---LLGKF 155 (612)
Q Consensus 82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~--~~~~~h~~~V~~l~~sp~-~~~l~s~s~dg~v~iwd~~~~~---~~~~~ 155 (612)
...+++|..-+.|++|.+.+|.-.. .-+.+|+..|-+++|||. ...|++||.||+|+|||++.+. ++. .
T Consensus 224 ----~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~-~ 298 (440)
T KOG0302|consen 224 ----TGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVS-T 298 (440)
T ss_pred ----ccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeE-e
Confidence 4557888888999999999876431 222469999999999995 4569999999999999999883 333 3
Q ss_pred ecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCC---CeeEEEEecCCCCEEEEEEeeCCc-EEEEEEcCCCeEEEEEc
Q 007234 156 RASTKGISCMAVSSDGKMLATAA--GQLKTFNCSD---HKKMQKFSGHPGAVRFMTFSDNGK-YVLSSAVGERYIALWRT 229 (612)
Q Consensus 156 ~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~---~~~~~~~~~h~~~v~~l~~sp~~~-~l~s~s~~d~~i~vwd~ 229 (612)
+.|...|+.|.|+.+..+||+|+ |+++|||+++ ++++..|+-|..+|+++.|+|... .++++| .|.+|.+||+
T Consensus 299 kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg-~D~QitiWDl 377 (440)
T KOG0302|consen 299 KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASG-EDNQITIWDL 377 (440)
T ss_pred eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEecc-CCCcEEEEEe
Confidence 78999999999999888999998 9999999975 578999999999999999999654 445554 7999999998
Q ss_pred CCC
Q 007234 230 DGV 232 (612)
Q Consensus 230 ~~~ 232 (612)
...
T Consensus 378 svE 380 (440)
T KOG0302|consen 378 SVE 380 (440)
T ss_pred ecc
Confidence 654
No 137
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=7.8e-19 Score=161.99 Aligned_cols=240 Identities=13% Similarity=0.235 Sum_probs=173.1
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCC----cEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccC
Q 007234 10 LTSFSPALDYFAICSGDARIKIWDTLKG----QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLG 85 (612)
Q Consensus 10 ~~~fspdg~~las~s~dg~i~iwd~~~~----~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 85 (612)
|+.|++-|+.+|+|+.|++|+|||..+. .+...++.|.+.+..+.|.++..
T Consensus 18 dVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEf------------------------- 72 (361)
T KOG2445|consen 18 DVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEF------------------------- 72 (361)
T ss_pred eeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccc-------------------------
Confidence 4599999999999999999999996433 46677888888888777776611
Q ss_pred CcEEEEEECCCcEEEEEcCCC-------e-EEEEeccCCCCCeEEEEEec--CCCEEEEEecCCcEEEEECCCC------
Q 007234 86 SSLLVLGTGGGDVLALAVSAG-------Q-LKWRLSDCHPGGVSAISFAT--HGSCIYSAGADGMVCEIDPLTG------ 149 (612)
Q Consensus 86 ~~~l~~gs~~g~I~vwd~~~~-------~-~~~~~~~~h~~~V~~l~~sp--~~~~l~s~s~dg~v~iwd~~~~------ 149 (612)
|+.+++++.|+++.||.=... + .....+....+.|+++.|.| -|-.+++++.||.+|+|+.-..
T Consensus 73 GqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W 152 (361)
T KOG2445|consen 73 GQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQW 152 (361)
T ss_pred cceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccc
Confidence 889999999999999976211 1 11222345678899999999 4567999999999999986433
Q ss_pred ceeEEEe-------cCCCCeeEEEECCC---CCEEEEeC-------CeEEEEEcCCC----eeEEEEecCCCCEEEEEEe
Q 007234 150 SLLGKFR-------ASTKGISCMAVSSD---GKMLATAA-------GQLKTFNCSDH----KKMQKFSGHPGAVRFMTFS 208 (612)
Q Consensus 150 ~~~~~~~-------~~~~~v~~l~~spd---g~~l~~~~-------g~i~lwd~~~~----~~~~~~~~h~~~v~~l~~s 208 (612)
.....++ .+..+..|+.|+|. ..++|+|+ +.++||....+ ..+.++.+|..+|+.++|.
T Consensus 153 ~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wA 232 (361)
T KOG2445|consen 153 TLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWA 232 (361)
T ss_pred hhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeec
Confidence 2222333 34557889999973 46788887 38899976544 3467788999999999999
Q ss_pred eCC----cEEEEEEcCCCeEEEEEcCCCc------------c---ccceeeEeec-CCceeEEeEEecCCccCCCCcEEE
Q 007234 209 DNG----KYVLSSAVGERYIALWRTDGVK------------K---QSASCVLAME-HPAVFMDCRCIDNGGVDDAGLYVL 268 (612)
Q Consensus 209 p~~----~~l~s~s~~d~~i~vwd~~~~~------------~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~ 268 (612)
|+- ..+++++ .|| |+||.+.... . .....+..+. |...+.. +.|. -.|..|.
T Consensus 233 Pn~Gr~y~~lAvA~-kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWr-v~wN-----mtGtiLs 304 (361)
T KOG2445|consen 233 PNIGRSYHLLAVAT-KDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWR-VRWN-----MTGTILS 304 (361)
T ss_pred cccCCceeeEEEee-cCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEE-EEEe-----eeeeEEe
Confidence 962 3456665 799 9999987421 0 0011222233 3334443 4454 6789999
Q ss_pred EEecCCcEEEEECC
Q 007234 269 AISETGVCYIWYGQ 282 (612)
Q Consensus 269 t~s~dg~i~iwd~~ 282 (612)
+.+.||.|++|...
T Consensus 305 StGdDG~VRLWkan 318 (361)
T KOG2445|consen 305 STGDDGCVRLWKAN 318 (361)
T ss_pred ecCCCceeeehhhh
Confidence 99999999999743
No 138
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.84 E-value=4.4e-19 Score=164.54 Aligned_cols=269 Identities=17% Similarity=0.232 Sum_probs=182.4
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccc-cccccccceeEEEeeecccccccccCCcEE
Q 007234 11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRL-EREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (612)
Q Consensus 11 ~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~-~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (612)
|.|||||.-|.+-+.|..+.+|++-..-.-..-. ... -+.... ..-.....+-..+|.+.- +..++...++
T Consensus 55 ckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~---~~~---~~~~~~~~r~~eg~tvydy~wYs~M--~s~qP~t~l~ 126 (406)
T KOG2919|consen 55 CKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKAD---GPL---NFSKHLSYRYQEGETVYDYCWYSRM--KSDQPSTNLF 126 (406)
T ss_pred ceeCCCCceEEeecccCeeeEEecChhhcccCCC---Ccc---ccccceeEEeccCCEEEEEEeeecc--ccCCCcccee
Confidence 5899999999999999999999974221110000 000 000000 000011223344565321 0011126788
Q ss_pred EEEECCCcEEEEEcCCCeEEEEec-cCCCCC---eEEEEEecCCCEEEEEecCCcEEEEEC-CCCceeEE---Ee----c
Q 007234 90 VLGTGGGDVLALAVSAGQLKWRLS-DCHPGG---VSAISFATHGSCIYSAGADGMVCEIDP-LTGSLLGK---FR----A 157 (612)
Q Consensus 90 ~~gs~~g~I~vwd~~~~~~~~~~~-~~h~~~---V~~l~~sp~~~~l~s~s~dg~v~iwd~-~~~~~~~~---~~----~ 157 (612)
++.+.+.-|++||.-+|+....+. ..|... -.+++|+|||..|++| ...+|++||+ +.|+-... +. +
T Consensus 127 a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~g 205 (406)
T KOG2919|consen 127 AVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFG 205 (406)
T ss_pred eeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhccccc
Confidence 888999999999999998765442 124333 4689999999998877 6788999999 55542221 11 1
Q ss_pred CCCCeeEEEECCCC-CEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCcc
Q 007234 158 STKGISCMAVSSDG-KMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK 234 (612)
Q Consensus 158 ~~~~v~~l~~spdg-~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~ 234 (612)
..+-+.|++|+|.. +.+++|+ ..+-||.-..+.++..+-+|.+.|+.+.|.++|+.|++++..|-.|.+||++....
T Consensus 206 q~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~ 285 (406)
T KOG2919|consen 206 QKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRD 285 (406)
T ss_pred ccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccc
Confidence 24578999999954 5888888 67888888888899999999999999999999999999987788999999998754
Q ss_pred ccceeeEeecCC-ceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCC-cceecccCCcee
Q 007234 235 QSASCVLAMEHP-AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN-IEELRNTKATKI 295 (612)
Q Consensus 235 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~-~~~~~~~~~~~~ 295 (612)
. ++.+..+ ...-.-+.|. ..|++++|++|+.||.|++||++. ++..........
T Consensus 286 p----v~~L~rhv~~TNQRI~FD---ld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd 341 (406)
T KOG2919|consen 286 P----VYALERHVGDTNQRILFD---LDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSD 341 (406)
T ss_pred h----hhhhhhhccCccceEEEe---cCCCCceeeccCCCccEEEEecCCCCCcccccccccc
Confidence 3 3333322 2122333443 238999999999999999999987 554444444333
No 139
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=3.5e-19 Score=171.92 Aligned_cols=253 Identities=18% Similarity=0.202 Sum_probs=170.7
Q ss_pred CCEEEEEeCCCcEEEEECCCCcEE---EEeeccCCcccc-ccccccccccccccceeEEEeeecccccccccCCcEEEEE
Q 007234 17 LDYFAICSGDARIKIWDTLKGQVQ---TEFADIASTETT-SLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLG 92 (612)
Q Consensus 17 g~~las~s~dg~i~iwd~~~~~~~---~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~g 92 (612)
|+|+|.|..|..|.|||+.=-..+ ..+....+.... .........+|.. ..-.+.|.-.. .+.|++|
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTd-avl~Ls~n~~~--------~nVLaSg 262 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTD-AVLALSWNRNF--------RNVLASG 262 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchH-HHHHHHhcccc--------ceeEEec
Confidence 689999999999999998532211 111000000000 0000000001211 11133443322 6789999
Q ss_pred ECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEec-CCCEEEEEecCCcEEEEECCCCce-eEEEecCCCCeeEEEECCC
Q 007234 93 TGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSL-LGKFRASTKGISCMAVSSD 170 (612)
Q Consensus 93 s~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp-~~~~l~s~s~dg~v~iwd~~~~~~-~~~~~~~~~~v~~l~~spd 170 (612)
+.|.+|++||+.+|++...+ ..|...|.++.|+| ....|++||.|++|.+.|++.... -..++ ..+.|..++|.|.
T Consensus 263 saD~TV~lWD~~~g~p~~s~-~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~g~VEkv~w~~~ 340 (463)
T KOG0270|consen 263 SADKTVKLWDVDTGKPKSSI-THHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-FDGEVEKVAWDPH 340 (463)
T ss_pred CCCceEEEEEcCCCCcceeh-hhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE-eccceEEEEecCC
Confidence 99999999999999998776 46999999999999 456799999999999999985332 23344 3568999999997
Q ss_pred CCEEEEeC---CeEEEEEcCCC-eeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCC
Q 007234 171 GKMLATAA---GQLKTFNCSDH-KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP 246 (612)
Q Consensus 171 g~~l~~~~---g~i~lwd~~~~-~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 246 (612)
....+.++ |+++-+|++.. +++.++..|.++|.++++++.-..+++.++.|+.|++|++...... .+......
T Consensus 341 se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~---~v~~~~~~ 417 (463)
T KOG0270|consen 341 SENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPK---SVKEHSFK 417 (463)
T ss_pred CceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCc---cccccccc
Confidence 66544443 99999999976 8999999999999999999877665555568999999999876543 11111111
Q ss_pred ceeEEeEEecCCccCCC-CcEEEEEecCCcEEEEECCCcceec
Q 007234 247 AVFMDCRCIDNGGVDDA-GLYVLAISETGVCYIWYGQNIEELR 288 (612)
Q Consensus 247 ~~~~~~~~~~~~~~~~~-~~~l~t~s~dg~i~iwd~~~~~~~~ 288 (612)
-..+.+..+. |+ ..+++.|+..+.+++||+.+...++
T Consensus 418 ~~rl~c~~~~-----~~~a~~la~GG~k~~~~vwd~~~~~~V~ 455 (463)
T KOG0270|consen 418 LGRLHCFALD-----PDVAFTLAFGGEKAVLRVWDIFTNSPVR 455 (463)
T ss_pred ccceeecccC-----CCcceEEEecCccceEEEeecccChhHH
Confidence 1113333333 33 3567778888899999988776543
No 140
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=4.9e-19 Score=158.24 Aligned_cols=235 Identities=17% Similarity=0.170 Sum_probs=173.8
Q ss_pred CcEEEEEECCCcEEEEEcCCCeE--EEEeccCCCCCeEEEEEec--CCCEEEEEecCCcEEEEECCCCc--eeEEEecCC
Q 007234 86 SSLLVLGTGGGDVLALAVSAGQL--KWRLSDCHPGGVSAISFAT--HGSCIYSAGADGMVCEIDPLTGS--LLGKFRAST 159 (612)
Q Consensus 86 ~~~l~~gs~~g~I~vwd~~~~~~--~~~~~~~h~~~V~~l~~sp--~~~~l~s~s~dg~v~iwd~~~~~--~~~~~~~~~ 159 (612)
+..|++++.|++|+|+.++.+.. +...+.+|.++|+.++|.. -|..|++|+.||.|.+|.-..|+ ....+..|.
T Consensus 23 gkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~ 102 (299)
T KOG1332|consen 23 GKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHS 102 (299)
T ss_pred cceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhc
Confidence 78899999999999999987542 2233479999999999965 78999999999999999987774 345567789
Q ss_pred CCeeEEEECCC--CCEEEEeC--CeEEEEEcCCC---eeEEEEecCCCCEEEEEEeeC---C-----------cEEEEEE
Q 007234 160 KGISCMAVSSD--GKMLATAA--GQLKTFNCSDH---KKMQKFSGHPGAVRFMTFSDN---G-----------KYVLSSA 218 (612)
Q Consensus 160 ~~v~~l~~spd--g~~l~~~~--g~i~lwd~~~~---~~~~~~~~h~~~v~~l~~sp~---~-----------~~l~s~s 218 (612)
..|++++|.|. |-.|++++ |.|.+.+.++. ..-+....|.-.|++++|.|. | +.|+++|
T Consensus 103 ~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgG 182 (299)
T KOG1332|consen 103 ASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGG 182 (299)
T ss_pred ccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccC
Confidence 99999999985 56777776 99999988754 223455789999999999986 4 5689988
Q ss_pred cCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEee
Q 007234 219 VGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSS 298 (612)
Q Consensus 219 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~ 298 (612)
.|..|+||+...+.-. .-..+..+...++-+++.|..- --..++++++.||++.||... .+. .
T Consensus 183 -cDn~VkiW~~~~~~w~---~e~~l~~H~dwVRDVAwaP~~g-l~~s~iAS~SqDg~viIwt~~-~e~-e---------- 245 (299)
T KOG1332|consen 183 -CDNLVKIWKFDSDSWK---LERTLEGHKDWVRDVAWAPSVG-LPKSTIASCSQDGTVIIWTKD-EEY-E---------- 245 (299)
T ss_pred -CccceeeeecCCcchh---hhhhhhhcchhhhhhhhccccC-CCceeeEEecCCCcEEEEEec-Ccc-C----------
Confidence 6999999999886432 2233556666666677763221 123679999999999999643 110 0
Q ss_pred cccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeeccee
Q 007234 299 SEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY 378 (612)
Q Consensus 299 ~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~ 378 (612)
+-.. .. +......++++.||+.|.+|.++++ |+.+.+|.
T Consensus 246 ------~wk~---------------------------tl-------l~~f~~~~w~vSWS~sGn~LaVs~G-dNkvtlwk 284 (299)
T KOG1332|consen 246 ------PWKK---------------------------TL-------LEEFPDVVWRVSWSLSGNILAVSGG-DNKVTLWK 284 (299)
T ss_pred ------cccc---------------------------cc-------cccCCcceEEEEEeccccEEEEecC-CcEEEEEE
Confidence 0000 00 0011236899999999999955555 88889995
No 141
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=4e-18 Score=178.14 Aligned_cols=264 Identities=15% Similarity=0.099 Sum_probs=194.4
Q ss_pred eeEEEeeecccccccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECC
Q 007234 68 YTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL 147 (612)
Q Consensus 68 ~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~ 147 (612)
.+.++|.+. +++|++++.||.|++|+.............+...|.+++.. +.+|++|+.+++|.+|.+.
T Consensus 16 ~t~i~~d~~---------gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fp 84 (933)
T KOG1274|consen 16 LTLICYDPD---------GEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFP 84 (933)
T ss_pred eEEEEEcCC---------CCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCC
Confidence 556666655 78999999999999999887732223333377888888764 4589999999999999998
Q ss_pred CCceeEEEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEE
Q 007234 148 TGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIA 225 (612)
Q Consensus 148 ~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~ 225 (612)
+++.-..+....-++.+++|+.+|+++|.|+ -.|++.++........+.+|.++|.++.|+|.+.+|++++ .||.|+
T Consensus 85 s~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss-~dG~v~ 163 (933)
T KOG1274|consen 85 SGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSS-CDGKVQ 163 (933)
T ss_pred CCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEe-cCceEE
Confidence 8876656665667899999999999999999 6899999999988999999999999999999999999987 699999
Q ss_pred EEEcCCCccccc-eee-EeecCC-ceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEe-eccc
Q 007234 226 LWRTDGVKKQSA-SCV-LAMEHP-AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILS-SSED 301 (612)
Q Consensus 226 vwd~~~~~~~~~-~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~ 301 (612)
+|++.++..... ..+ ...+.. ..++....|+ |+|..+++.+.|+.|++|+..+++............ .+..
T Consensus 164 iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~-----Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~ 238 (933)
T KOG1274|consen 164 IWDLQDGILSKTLTGVDKDNEFILSRICTRLAWH-----PKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDL 238 (933)
T ss_pred EEEcccchhhhhcccCCccccccccceeeeeeec-----CCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEE
Confidence 999998764310 000 011111 3455566676 999999999999999999998887765443332211 3333
Q ss_pred ccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceE
Q 007234 302 VNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLL 364 (612)
Q Consensus 302 ~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l 364 (612)
.|+|.|+ +|+++..++.+-+||.. . .++ ......|.+++|-|++.-+
T Consensus 239 ~wsPnG~----YiAAs~~~g~I~vWnv~-------t----~~~-~~~~~~Vc~~aw~p~~n~i 285 (933)
T KOG1274|consen 239 QWSPNGK----YIAASTLDGQILVWNVD-------T----HER-HEFKRAVCCEAWKPNANAI 285 (933)
T ss_pred EEcCCCc----EEeeeccCCcEEEEecc-------c----chh-ccccceeEEEecCCCCCee
Confidence 4778877 78888776544444411 0 011 1123357788888887766
No 142
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.80 E-value=1e-17 Score=154.92 Aligned_cols=255 Identities=20% Similarity=0.214 Sum_probs=178.7
Q ss_pred CcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEE
Q 007234 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCM 165 (612)
Q Consensus 86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l 165 (612)
+..|++++.||.+++||+........+ .|..++.+++|.++ ..+++|+.||.|+.+|+.++... .+..|..++.||
T Consensus 25 ~~~LLvssWDgslrlYdv~~~~l~~~~--~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~~-~igth~~~i~ci 100 (323)
T KOG1036|consen 25 SSDLLVSSWDGSLRLYDVPANSLKLKF--KHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNED-QIGTHDEGIRCI 100 (323)
T ss_pred CCcEEEEeccCcEEEEeccchhhhhhe--ecCCceeeeeccCC-ceEEEeccCceEEEEEecCCcce-eeccCCCceEEE
Confidence 677888899999999999988765555 48999999999974 46999999999999999877653 445588999999
Q ss_pred EECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEee
Q 007234 166 AVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAM 243 (612)
Q Consensus 166 ~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~ 243 (612)
.+++....+++|+ ++|++||.++......+. ....|.++..+ |..|+.++ .|+.+.+||+++..... ...-
T Consensus 101 ~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v~--g~~LvVg~-~~r~v~iyDLRn~~~~~---q~re 173 (323)
T KOG1036|consen 101 EYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDVS--GNRLVVGT-SDRKVLIYDLRNLDEPF---QRRE 173 (323)
T ss_pred EeeccCCeEEEcccCccEEEEeccccccccccc-cCceEEEEecc--CCEEEEee-cCceEEEEEcccccchh---hhcc
Confidence 9999888899998 899999999866555554 33478887765 55788876 69999999999876431 0111
Q ss_pred cCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCccee----cccCC-------ceeEe-ecccccCCCCcccc
Q 007234 244 EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL----RNTKA-------TKILS-SSEDVNSKSQKSAT 311 (612)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~----~~~~~-------~~~~~-~~~~~~s~~~~~~~ 311 (612)
..-...+.++++- |++.-.++++-||+|.+=.++..+.. ..++- ..+.. .....|.|...
T Consensus 174 S~lkyqtR~v~~~-----pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~--- 245 (323)
T KOG1036|consen 174 SSLKYQTRCVALV-----PNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHG--- 245 (323)
T ss_pred ccceeEEEEEEEe-----cCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccc---
Confidence 1223445566665 77888899999998877544443111 11111 11111 11223666655
Q ss_pred hhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEecccc
Q 007234 312 AAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQS 369 (612)
Q Consensus 312 ~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s 369 (612)
.+++|+.||.+..||+.. .+ ....+..-...|.+++|+.||..| +.++
T Consensus 246 -tfaTgGsDG~V~~Wd~~~-------rK-rl~q~~~~~~SI~slsfs~dG~~L-Aia~ 293 (323)
T KOG1036|consen 246 -TFATGGSDGIVNIWDLFN-------RK-RLKQLAKYETSISSLSFSMDGSLL-AIAS 293 (323)
T ss_pred -eEEecCCCceEEEccCcc-------hh-hhhhccCCCCceEEEEeccCCCeE-EEEe
Confidence 799999988888877221 11 111222223359999999999999 4443
No 143
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=8.5e-19 Score=162.09 Aligned_cols=255 Identities=14% Similarity=0.127 Sum_probs=180.9
Q ss_pred eEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEec
Q 007234 120 VSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSG 197 (612)
Q Consensus 120 V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~ 197 (612)
-.|+.|++.|.+|++|+.||.|.+||+.+...-+.+.+|..+|++++||+||+.|++++ ..|.+||+..|.+++.+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir- 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR- 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-
Confidence 68999999999999999999999999999998888999999999999999999999999 799999999999998886
Q ss_pred CCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCce---eEEeEEecCCccCCCCcEEEEEecCC
Q 007234 198 HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAV---FMDCRCIDNGGVDDAGLYVLAISETG 274 (612)
Q Consensus 198 h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~t~s~dg 274 (612)
..++|....|+|.....+.++--+..-.+-++..+... ++....... ..+...|. +.|+++++|+..|
T Consensus 105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~----~Lp~d~d~dln~sas~~~fd-----r~g~yIitGtsKG 175 (405)
T KOG1273|consen 105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHS----VLPKDDDGDLNSSASHGVFD-----RRGKYIITGTSKG 175 (405)
T ss_pred ccCccceeeeccccCCeEEEEEecCCcEEEEecCCcee----eccCCCcccccccccccccc-----CCCCEEEEecCcc
Confidence 78899999999965433333323554555565543321 122221111 11222344 8999999999999
Q ss_pred cEEEEECCCcceecccCCce-eEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccC----ceEEEeeccC
Q 007234 275 VCYIWYGQNIEELRNTKATK-ILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLK----PSFQKILVNS 349 (612)
Q Consensus 275 ~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~----~~~~~~~~h~ 349 (612)
.+.++|..+.+.+..++... ..+. ...++..+. .++.-+.|..++.++..-+...|.... ..++.+. ..
T Consensus 176 kllv~~a~t~e~vas~rits~~~IK-~I~~s~~g~----~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvV-Nk 249 (405)
T KOG1273|consen 176 KLLVYDAETLECVASFRITSVQAIK-QIIVSRKGR----FLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVV-NK 249 (405)
T ss_pred eEEEEecchheeeeeeeechheeee-EEEEeccCc----EEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHH-hh
Confidence 99999999998877665544 2222 222455555 677777777777777664443332211 1111111 11
Q ss_pred CCeEEEEecCCCceEeccccceeeecceeee--cceeecccCC
Q 007234 350 GEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ--NRVTALDRAN 390 (612)
Q Consensus 350 ~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~~--~~~~~~~~~~ 390 (612)
-.-.+++||.||.|++++.+.-..+.+|+.. +-++.|....
T Consensus 250 ~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~k 292 (405)
T KOG1273|consen 250 LQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTK 292 (405)
T ss_pred hhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCc
Confidence 1345788999999997777778899999863 3377776544
No 144
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.80 E-value=8.2e-18 Score=154.94 Aligned_cols=227 Identities=17% Similarity=0.161 Sum_probs=172.7
Q ss_pred CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (612)
Q Consensus 2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (612)
+.+|| |+++|+.||..+++|+.|+.+++||+.+++..+ +..|.+++ .++.|.+...
T Consensus 71 ~~~Pv--L~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~-v~~Hd~pv------------------kt~~wv~~~~--- 126 (347)
T KOG0647|consen 71 HDGPV--LDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQ-VAAHDAPV------------------KTCHWVPGMN--- 126 (347)
T ss_pred cCCCe--EEEEEccCCceEEeeccCCceEEEEccCCCeee-eeecccce------------------eEEEEecCCC---
Confidence 46788 888999999999999999999999999997654 44455444 4556665432
Q ss_pred cccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEE-Ee-cCC
Q 007234 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK-FR-AST 159 (612)
Q Consensus 82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~-~~-~~~ 159 (612)
...|++|+.|.+|+.||++....+.++. -.+.|+++..- ...++++..+..|.+++++.+..... .. ...
T Consensus 127 ----~~cl~TGSWDKTlKfWD~R~~~pv~t~~--LPeRvYa~Dv~--~pm~vVata~r~i~vynL~n~~te~k~~~SpLk 198 (347)
T KOG0647|consen 127 ----YQCLVTGSWDKTLKFWDTRSSNPVATLQ--LPERVYAADVL--YPMAVVATAERHIAVYNLENPPTEFKRIESPLK 198 (347)
T ss_pred ----cceeEecccccceeecccCCCCeeeeee--ccceeeehhcc--CceeEEEecCCcEEEEEcCCCcchhhhhcCccc
Confidence 4579999999999999999888876663 45677777653 44788888999999999977643222 11 123
Q ss_pred CCeeEEEECCCCCEEEEeC--CeEEEEEcCCC--eeEEEEecCCC---------CEEEEEEeeCCcEEEEEEcCCCeEEE
Q 007234 160 KGISCMAVSSDGKMLATAA--GQLKTFNCSDH--KKMQKFSGHPG---------AVRFMTFSDNGKYVLSSAVGERYIAL 226 (612)
Q Consensus 160 ~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~--~~~~~~~~h~~---------~v~~l~~sp~~~~l~s~s~~d~~i~v 226 (612)
..+.|++..+|....+.|+ |.+.+..+..+ +.-..|+.|.. .|++|+|+|....|+++| .||+...
T Consensus 199 ~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaG-sDGtf~F 277 (347)
T KOG0647|consen 199 WQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAG-SDGTFSF 277 (347)
T ss_pred ceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEec-CCceEEE
Confidence 4688999999888888888 99999888776 44455666652 477899999988999998 5999999
Q ss_pred EEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEe
Q 007234 227 WRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS 271 (612)
Q Consensus 227 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s 271 (612)
||-+...++ ...+.+...+.+..|+ .+|.+++-+.
T Consensus 278 WDkdar~kL-----k~s~~~~qpItcc~fn-----~~G~ifaYA~ 312 (347)
T KOG0647|consen 278 WDKDARTKL-----KTSETHPQPITCCSFN-----RNGSIFAYAL 312 (347)
T ss_pred ecchhhhhh-----hccCcCCCccceeEec-----CCCCEEEEEe
Confidence 998766533 3445566677888887 8888877663
No 145
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.80 E-value=2.6e-18 Score=166.49 Aligned_cols=204 Identities=14% Similarity=0.196 Sum_probs=159.0
Q ss_pred ccceeEEEeeecccccccccCCcEEEEEECCCcEEEEEcCCCe---EEEEeccCCCCCeEEEEEec-CCCEEEEEecCCc
Q 007234 65 SVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQ---LKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGM 140 (612)
Q Consensus 65 ~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~---~~~~~~~~h~~~V~~l~~sp-~~~~l~s~s~dg~ 140 (612)
...+++++|.|..+ .+++++|...|+|-+||+.+.+ .-..+...|..+|.++.|+| +-..+++.|.||+
T Consensus 186 ~~Rit~l~fHPt~~-------~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGt 258 (498)
T KOG4328|consen 186 DRRITSLAFHPTEN-------RKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGT 258 (498)
T ss_pred ccceEEEEecccCc-------ceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCce
Confidence 55788899988764 3789999999999999995322 11233467999999999999 4457999999999
Q ss_pred EEEEECCCCce--eEEEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCee-EEEEecCCCCEEEEEEeeCCcEEE
Q 007234 141 VCEIDPLTGSL--LGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKK-MQKFSGHPGAVRFMTFSDNGKYVL 215 (612)
Q Consensus 141 v~iwd~~~~~~--~~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~-~~~~~~h~~~v~~l~~sp~~~~l~ 215 (612)
|++-|++.+.. +.........+.++.|+.+...++.++ |...+||.+++.. ...+.-|...|.+++++|...+++
T Consensus 259 iR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~l 338 (498)
T KOG4328|consen 259 IRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFL 338 (498)
T ss_pred eeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchhe
Confidence 99999987643 333333455788899998887777777 9999999998755 666778899999999999877555
Q ss_pred EEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEEC
Q 007234 216 SSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (612)
Q Consensus 216 s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~ 281 (612)
.+++-|++.+|||++.-..... +....-.+...+..++|+ |.+..|++.+.|..|+|||.
T Consensus 339 aT~s~D~T~kIWD~R~l~~K~s-p~lst~~HrrsV~sAyFS-----Ps~gtl~TT~~D~~IRv~ds 398 (498)
T KOG4328|consen 339 ATASLDQTAKIWDLRQLRGKAS-PFLSTLPHRRSVNSAYFS-----PSGGTLLTTCQDNEIRVFDS 398 (498)
T ss_pred eecccCcceeeeehhhhcCCCC-cceecccccceeeeeEEc-----CCCCceEeeccCCceEEeec
Confidence 4445899999999987654421 233334556677888898 88888999999999999997
No 146
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.79 E-value=5.6e-18 Score=155.27 Aligned_cols=195 Identities=13% Similarity=0.143 Sum_probs=154.6
Q ss_pred CcEEEEEECCCcEEEEEcCCCe------------EE--EEeccCCCCCeEEEEEec-CCCEEEEEecCCcEEEEECCCCc
Q 007234 86 SSLLVLGTGGGDVLALAVSAGQ------------LK--WRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGS 150 (612)
Q Consensus 86 ~~~l~~gs~~g~I~vwd~~~~~------------~~--~~~~~~h~~~V~~l~~sp-~~~~l~s~s~dg~v~iwd~~~~~ 150 (612)
++++++|+.||.|.+||++... ++ .....+|.-.|.++.|-| |...|.++|.|.++++||..+-+
T Consensus 56 grymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ 135 (397)
T KOG4283|consen 56 GRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQ 135 (397)
T ss_pred ceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccce
Confidence 8899999999999999997643 10 112356888999999999 66788999999999999999999
Q ss_pred eeEEEecCCCCeeEEEECCCC---CEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEE
Q 007234 151 LLGKFRASTKGISCMAVSSDG---KMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIA 225 (612)
Q Consensus 151 ~~~~~~~~~~~v~~l~~spdg---~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~ 225 (612)
....|+ .++.|++-+++|-. .++|+|. -.|++.|+.+|..-..+.||.+.|.++.|+|...+++..++.||.|+
T Consensus 136 ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~ir 214 (397)
T KOG4283|consen 136 EAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIR 214 (397)
T ss_pred eeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEE
Confidence 888887 46678888998843 4566666 58999999999999999999999999999999998877777899999
Q ss_pred EEEcCCCccc----------cceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcce
Q 007234 226 LWRTDGVKKQ----------SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE 286 (612)
Q Consensus 226 vwd~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~ 286 (612)
+||++....- .......-..+...+..++|. .++.++++++.|..+++|+..+|+.
T Consensus 215 lWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~t-----Sd~~~l~~~gtd~r~r~wn~~~G~n 280 (397)
T KOG4283|consen 215 LWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWT-----SDARYLASCGTDDRIRVWNMESGRN 280 (397)
T ss_pred EEEeecccceeEEeecccCccCccccccccccceeeeeeec-----ccchhhhhccCccceEEeecccCcc
Confidence 9999764210 000111122233344566676 8999999999999999999988864
No 147
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=5.1e-17 Score=150.11 Aligned_cols=264 Identities=11% Similarity=0.074 Sum_probs=179.4
Q ss_pred ceeEEEeeecccccccccCCcEEEEEECCCcEEEEEcCCCeEEEEe---ccCCCCCeEEEEEec--CCCEEEEEecCCcE
Q 007234 67 DYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRL---SDCHPGGVSAISFAT--HGSCIYSAGADGMV 141 (612)
Q Consensus 67 ~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~---~~~h~~~V~~l~~sp--~~~~l~s~s~dg~v 141 (612)
-..|+.|... |+.+++|+.|++|+|||.......+.. -+.|.+.|..+.|.+ -|+.+++||.|+++
T Consensus 15 lihdVs~D~~---------GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv 85 (361)
T KOG2445|consen 15 LIHDVSFDFY---------GRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTV 85 (361)
T ss_pred eeeeeeeccc---------CceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCce
Confidence 3455666555 888999999999999997654432222 257999999999965 58889999999999
Q ss_pred EEEECCC---------CceeEEEecCCCCeeEEEECC--CCCEEEEeC--CeEEEEEcCCC------eeEEEEe------
Q 007234 142 CEIDPLT---------GSLLGKFRASTKGISCMAVSS--DGKMLATAA--GQLKTFNCSDH------KKMQKFS------ 196 (612)
Q Consensus 142 ~iwd~~~---------~~~~~~~~~~~~~v~~l~~sp--dg~~l~~~~--g~i~lwd~~~~------~~~~~~~------ 196 (612)
.+|.-.. .....++......|+.++|.| -|-.||+++ |.++||+.-.. .+..++.
T Consensus 86 ~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp 165 (361)
T KOG2445|consen 86 SIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPP 165 (361)
T ss_pred eeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCc
Confidence 9997521 123455677788999999998 466778777 99999986432 2222222
Q ss_pred -cCCCCEEEEEEeeC---CcEEEEEEcCC-----CeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEE
Q 007234 197 -GHPGAVRFMTFSDN---GKYVLSSAVGE-----RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYV 267 (612)
Q Consensus 197 -~h~~~v~~l~~sp~---~~~l~s~s~~d-----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 267 (612)
.+..+..|+.|+|. ..+|+.++ .+ +.++||........ ...+..+..+...+..++|.+... ..-+.|
T Consensus 166 ~~~~~~~~CvsWn~sr~~~p~iAvgs-~e~a~~~~~~~Iye~~e~~rK-w~kva~L~d~~dpI~di~wAPn~G-r~y~~l 242 (361)
T KOG2445|consen 166 GKNKQPCFCVSWNPSRMHEPLIAVGS-DEDAPHLNKVKIYEYNENGRK-WLKVAELPDHTDPIRDISWAPNIG-RSYHLL 242 (361)
T ss_pred ccccCcceEEeeccccccCceEEEEc-ccCCccccceEEEEecCCcce-eeeehhcCCCCCcceeeeeccccC-CceeeE
Confidence 46677889999974 35677765 33 37889987665422 223445556666777778874321 234679
Q ss_pred EEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeec
Q 007234 268 LAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILV 347 (612)
Q Consensus 268 ~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~ 347 (612)
++++.|| |+||.+.....-- .......|+.-. + ........+..
T Consensus 243 AvA~kDg-v~I~~v~~~~s~i---------~~ee~~~~~~~~-----------------~---------l~v~~vs~~~~ 286 (361)
T KOG2445|consen 243 AVATKDG-VRIFKVKVARSAI---------EEEEVLAPDLMT-----------------D---------LPVEKVSELDD 286 (361)
T ss_pred EEeecCc-EEEEEEeeccchh---------hhhcccCCCCcc-----------------c---------cceEEeeeccC
Confidence 9999999 9999875432100 000000111110 0 11122334567
Q ss_pred cCCCeEEEEecCCCceEeccccceeeecceee
Q 007234 348 NSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (612)
Q Consensus 348 h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~ 379 (612)
|.++|+.+.|..-|..| .|.|+||.+|+|..
T Consensus 287 H~~~VWrv~wNmtGtiL-sStGdDG~VRLWka 317 (361)
T KOG2445|consen 287 HNGEVWRVRWNMTGTIL-SSTGDDGCVRLWKA 317 (361)
T ss_pred CCCceEEEEEeeeeeEE-eecCCCceeeehhh
Confidence 99999999999999999 99999999999965
No 148
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.79 E-value=7.4e-18 Score=163.34 Aligned_cols=285 Identities=13% Similarity=0.112 Sum_probs=201.8
Q ss_pred CCcccceeEEEEcCCCC--EEEEEeCCCcEEEEECCCCc----EEEEeeccCCccccccccccccccccccceeEEEeee
Q 007234 2 GSSNIRDILTSFSPALD--YFAICSGDARIKIWDTLKGQ----VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLS 75 (612)
Q Consensus 2 ~s~~V~~l~~~fspdg~--~las~s~dg~i~iwd~~~~~----~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~ 75 (612)
++..|.++ +|+|..+ ++|+|..-|+|-+||+.+.+ -+..|..|+.+|.++.|++.
T Consensus 185 ~~~Rit~l--~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~----------------- 245 (498)
T KOG4328|consen 185 TDRRITSL--AFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPA----------------- 245 (498)
T ss_pred cccceEEE--EecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCC-----------------
Confidence 45667544 9999764 78888889999999995222 34456666666666666554
Q ss_pred cccccccccCCcEEEEEECCCcEEEEEcCCCeEE--EEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCce-e
Q 007234 76 VDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLK--WRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL-L 152 (612)
Q Consensus 76 ~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~--~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~-~ 152 (612)
+ ...+++.+.||+|++-|++.+... ..+ ..-.....++.|+.+...++.+..=|...+||.+++.. .
T Consensus 246 -n--------~s~i~ssSyDGtiR~~D~~~~i~e~v~s~-~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~ 315 (498)
T KOG4328|consen 246 -N--------TSQIYSSSYDGTIRLQDFEGNISEEVLSL-DTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEY 315 (498)
T ss_pred -C--------hhheeeeccCceeeeeeecchhhHHHhhc-CccceeeeeccccCCCccEEEeecccceEEEEeecCCccc
Confidence 3 567999999999999999876532 222 12345677888988888888888778999999998765 5
Q ss_pred EEEecCCCCeeEEEECCCCC-EEEEeC--CeEEEEEcCCCee----EEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEE
Q 007234 153 GKFRASTKGISCMAVSSDGK-MLATAA--GQLKTFNCSDHKK----MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIA 225 (612)
Q Consensus 153 ~~~~~~~~~v~~l~~spdg~-~l~~~~--g~i~lwd~~~~~~----~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~ 225 (612)
..+.-|...|.+++++|... +|++++ ++.+|||++.... +.....|...|.+..|||++-.|++.+ .|..|+
T Consensus 316 ~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~-~D~~IR 394 (498)
T KOG4328|consen 316 ENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTC-QDNEIR 394 (498)
T ss_pred hhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeec-cCCceE
Confidence 56677888999999999765 566676 8999999986432 233356999999999999888899887 799999
Q ss_pred EEEcC---CCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecc-cCCceeEeeccc
Q 007234 226 LWRTD---GVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRN-TKATKILSSSED 301 (612)
Q Consensus 226 vwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~ 301 (612)
|||.. ...+ ....+.|....-..+.--...|.|+..++++|..-..|-|||...++.+.. +.|....+.+..
T Consensus 395 v~dss~~sa~~~----p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn 470 (498)
T KOG4328|consen 395 VFDSSCISAKDE----PLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVN 470 (498)
T ss_pred EeecccccccCC----ccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccce
Confidence 99984 1111 123334443321111111223459999999999999999999999886655 566666777776
Q ss_pred ccCCCCcccchhhhcccc-cceec
Q 007234 302 VNSKSQKSATAAIFAAKL-QDIVK 324 (612)
Q Consensus 302 ~~s~~~~~~~~~i~~~~~-d~~~~ 324 (612)
.+-|... .+++|+. .|.++
T Consensus 471 ~~HP~~~----~~~aG~~s~Gki~ 490 (498)
T KOG4328|consen 471 EFHPMRD----TLAAGGNSSGKIY 490 (498)
T ss_pred eeccccc----ceeccCCccceEE
Confidence 6667655 3444443 34443
No 149
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.78 E-value=1.1e-17 Score=155.71 Aligned_cols=296 Identities=18% Similarity=0.203 Sum_probs=198.6
Q ss_pred cccceeEEEEcC-----CCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccc
Q 007234 4 SNIRDILTSFSP-----ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDR 78 (612)
Q Consensus 4 ~~V~~l~~~fsp-----dg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~ 78 (612)
.+|..+ +|++ .-+.+|++|. +++.+|+....--+..++...+ .......-.+.|.-...
T Consensus 39 ~~I~gv--~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D-------------~d~~Esfytcsw~yd~~ 102 (385)
T KOG1034|consen 39 KPIFGV--AFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYAD-------------EDHDESFYTCSWSYDSN 102 (385)
T ss_pred Ccccee--eeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccC-------------CCCCcceEEEEEEecCC
Confidence 567555 8875 2346666664 5789998754332222221111 11122333455654432
Q ss_pred ccccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCC-CEEEEEecCCcEEEEECCCCceeEEE--
Q 007234 79 KKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHG-SCIYSAGADGMVCEIDPLTGSLLGKF-- 155 (612)
Q Consensus 79 ~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~-~~l~s~s~dg~v~iwd~~~~~~~~~~-- 155 (612)
. ++.++++|+.-|.|+|.|+.++++...+ .+|...|+.+.|+|+. +++++||.|.+|++|++++..++..|
T Consensus 103 ~-----~~p~la~~G~~GvIrVid~~~~~~~~~~-~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG 176 (385)
T KOG1034|consen 103 T-----GNPFLAAGGYLGVIRVIDVVSGQCSKNY-RGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGG 176 (385)
T ss_pred C-----CCeeEEeecceeEEEEEecchhhhccce-eccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecc
Confidence 1 1678999999999999999999998777 6899999999999965 67999999999999999999999886
Q ss_pred -ecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCee-------------------------EE---EEecCCCCEEE
Q 007234 156 -RASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKK-------------------------MQ---KFSGHPGAVRF 204 (612)
Q Consensus 156 -~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~-------------------------~~---~~~~h~~~v~~ 204 (612)
.+|.+.|.++.|+++|.++++++ .+|++|++...+. +. +-.-|..+|.|
T Consensus 177 ~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDC 256 (385)
T KOG1034|consen 177 VEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDC 256 (385)
T ss_pred cccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHH
Confidence 45888999999999999999998 8999999873211 00 11246667777
Q ss_pred EEEeeCCcEEEEEEcCCCeEEEEEcCC-Ccc-----cc---ceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCc
Q 007234 205 MTFSDNGKYVLSSAVGERYIALWRTDG-VKK-----QS---ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGV 275 (612)
Q Consensus 205 l~~sp~~~~l~s~s~~d~~i~vwd~~~-~~~-----~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~ 275 (612)
+.|- |.++++-+ -++.|..|.... .+. .. ......+.-+.. .++|-...+++-+++||.|...|.
T Consensus 257 vrw~--gd~ilSks-cenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c---~iWfirf~~d~~~~~la~gnq~g~ 330 (385)
T KOG1034|consen 257 VRWF--GDFILSKS-CENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMC---DIWFIRFAFDPWQKMLALGNQSGK 330 (385)
T ss_pred HHHH--hhheeecc-cCceEEEEecchhhhhhhccCCCccceeeeeEeccCcc---ceEEEEEeecHHHHHHhhccCCCc
Confidence 7775 56888876 578999998722 111 00 111122222221 122222223478899999999999
Q ss_pred EEEEECCCcceecccCCceeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEE
Q 007234 276 CYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINL 355 (612)
Q Consensus 276 i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l 355 (612)
+.+||++..+... ...... ......|...
T Consensus 331 v~vwdL~~~ep~~-----~ttl~~----------------------------------------------s~~~~tVRQ~ 359 (385)
T KOG1034|consen 331 VYVWDLDNNEPPK-----CTTLTH----------------------------------------------SKSGSTVRQT 359 (385)
T ss_pred EEEEECCCCCCcc-----CceEEe----------------------------------------------ccccceeeee
Confidence 9999987665421 000000 0011257888
Q ss_pred EecCCCceEeccccceeeecceee
Q 007234 356 NCSQDGVLLPMSQSLLKSKRGRYV 379 (612)
Q Consensus 356 ~~S~dg~~l~~s~s~d~~~~~w~~ 379 (612)
+||.||.+| +-..+|+++--|+.
T Consensus 360 sfS~dgs~l-v~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 360 SFSRDGSIL-VLVCDDGTVWRWDR 382 (385)
T ss_pred eecccCcEE-EEEeCCCcEEEEEe
Confidence 899999999 66667999888875
No 150
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=1.1e-17 Score=162.26 Aligned_cols=245 Identities=15% Similarity=0.199 Sum_probs=186.4
Q ss_pred CcccceeEEEEcCCCC-EEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234 3 SSNIRDILTSFSPALD-YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (612)
Q Consensus 3 s~~V~~l~~~fspdg~-~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (612)
..||.. ++|.|+|. .+++++.-..+..||+.+.+..+.-. +.|+. -..+.-+...+.
T Consensus 257 ~fPi~~--a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~---------------~~g~e---~~~~e~FeVShd-- 314 (514)
T KOG2055|consen 257 KFPIQK--AEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKP---------------PYGVE---EKSMERFEVSHD-- 314 (514)
T ss_pred cCccce--eeecCCCceEEEecccceEEEEeeccccccccccC---------------CCCcc---cchhheeEecCC--
Confidence 357754 49999998 88889989999999999887654221 11111 111111211111
Q ss_pred cccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCC-
Q 007234 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK- 160 (612)
Q Consensus 82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~- 160 (612)
+++|++.+..|.|.+....+++.+..+. -.+.|.+++|+.+++.|+.++.+|.|.+||++...+++.|.....
T Consensus 315 ----~~fia~~G~~G~I~lLhakT~eli~s~K--ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v 388 (514)
T KOG2055|consen 315 ----SNFIAIAGNNGHIHLLHAKTKELITSFK--IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSV 388 (514)
T ss_pred ----CCeEEEcccCceEEeehhhhhhhhheee--eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCcc
Confidence 7899999999999999999999887763 568899999999999999999999999999999999999886443
Q ss_pred CeeEEEECCCCCEEEEeC--CeEEEEEcCC------CeeEEEEecCCCCEEEEEEeeCCcEEEEEEc-CCCeEEEEEcCC
Q 007234 161 GISCMAVSSDGKMLATAA--GQLKTFNCSD------HKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV-GERYIALWRTDG 231 (612)
Q Consensus 161 ~v~~l~~spdg~~l~~~~--g~i~lwd~~~------~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~-~d~~i~vwd~~~ 231 (612)
.-++++.+++|.++|+|+ |.|.|||.++ .+++..+..-...|+++.|+||++.|+.++. .+..+++-.+..
T Consensus 389 ~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS 468 (514)
T KOG2055|consen 389 HGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPS 468 (514)
T ss_pred ceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccc
Confidence 446788889999999999 9999999653 4667777777788999999999998887653 245788877765
Q ss_pred CccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECC
Q 007234 232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (612)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~ 282 (612)
...-+. -.....+...++++.|+ |.|.+++.|..+|.+.+|.+.
T Consensus 469 ~TVFsN--fP~~n~~vg~vtc~aFS-----P~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 469 CTVFSN--FPTSNTKVGHVTCMAFS-----PNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred eeeecc--CCCCCCcccceEEEEec-----CCCceEEeecCCCceeeEeec
Confidence 432110 00112344557888998 999999999999999999763
No 151
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.78 E-value=2.9e-17 Score=160.33 Aligned_cols=287 Identities=13% Similarity=0.165 Sum_probs=199.3
Q ss_pred CcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEECCCc--EEEEEcC
Q 007234 27 ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGD--VLALAVS 104 (612)
Q Consensus 27 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~--I~vwd~~ 104 (612)
..+++||.........+..+.. ......+.|.. ..++++++..|. +.+|.-.
T Consensus 12 d~~kl~D~s~~~~~~~~~~~t~----------------~pg~~s~~w~~----------~n~lvvas~~gdk~~~~~~K~ 65 (673)
T KOG4378|consen 12 DKTKLSDFSDLETKSEYVHQTA----------------EPGDFSFNWQR----------RNFLVVASMAGDKVMRIKEKD 65 (673)
T ss_pred CceEEeecccccCccccccCCC----------------CCcceeeeccc----------cceEEEeecCCceeEEEeccc
Confidence 3689999987665554443322 12245566754 344777777666 7777643
Q ss_pred CC--eEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEEEECCCCCEEEEeC--Ce
Q 007234 105 AG--QLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQ 180 (612)
Q Consensus 105 ~~--~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~--g~ 180 (612)
.. +.. .+.......-.|++......++++|+..++|++||++...+.+.+++|...|+++.++-...+||+++ |.
T Consensus 66 g~~~~Vp-~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGd 144 (673)
T KOG4378|consen 66 GKTPEVP-RVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGD 144 (673)
T ss_pred CCCCccc-eeeccccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCc
Confidence 22 221 11111222344555555567899999999999999998888888999999999999999999999998 89
Q ss_pred EEEEEcCCCeeEEEEecCCC-CEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCc
Q 007234 181 LKTFNCSDHKKMQKFSGHPG-AVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGG 259 (612)
Q Consensus 181 i~lwd~~~~~~~~~~~~h~~-~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (612)
|.|..+.++..-..|....+ .|.-+.|+|..+++++..+++|.|.+||+....+. . .....+......+||++
T Consensus 145 iiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~---~-~~~~~HsAP~~gicfsp-- 218 (673)
T KOG4378|consen 145 IIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPI---F-HASEAHSAPCRGICFSP-- 218 (673)
T ss_pred EEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcc---c-chhhhccCCcCcceecC--
Confidence 99999999988777864434 45588999999988877778999999999887644 1 22234555567788873
Q ss_pred cCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccC
Q 007234 260 VDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLK 339 (612)
Q Consensus 260 ~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~ 339 (612)
.+..+|++.+.|..|.+||.........+..... .... .|+++|. ++++|...| .++..+-....
T Consensus 219 --sne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~P-lstv-af~~~G~----~L~aG~s~G-------~~i~YD~R~~k 283 (673)
T KOG4378|consen 219 --SNEALLVSVGYDKKINIYDIRSQASTDRLTYSHP-LSTV-AFSECGT----YLCAGNSKG-------ELIAYDMRSTK 283 (673)
T ss_pred --CccceEEEecccceEEEeecccccccceeeecCC-ccee-eecCCce----EEEeecCCc-------eEEEEecccCC
Confidence 3557788899999999999876544332221111 1111 2677776 777777744 44444445555
Q ss_pred ceEEEeeccCCCeEEEEecCCC
Q 007234 340 PSFQKILVNSGEDINLNCSQDG 361 (612)
Q Consensus 340 ~~~~~~~~h~~~v~~l~~S~dg 361 (612)
.....+..|...|++++|-+.-
T Consensus 284 ~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 284 APVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred CCceEeeecccceeEEEeeecc
Confidence 5556777899999999998775
No 152
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=1.1e-18 Score=186.60 Aligned_cols=241 Identities=14% Similarity=0.141 Sum_probs=183.6
Q ss_pred ceeEEEEcCCCCE----EEEEeCCCcEEEEECCCC------cEEEEeeccCCccccccccccccccccccceeEEEeeec
Q 007234 7 RDILTSFSPALDY----FAICSGDARIKIWDTLKG------QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSV 76 (612)
Q Consensus 7 ~~l~~~fspdg~~----las~s~dg~i~iwd~~~~------~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~ 76 (612)
+.| +|.+.|.. ||.|..||.|.+||...- ..+.+++.|.+.|..+-|++.
T Consensus 68 ~kL--~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~------------------ 127 (1049)
T KOG0307|consen 68 NKL--AWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPF------------------ 127 (1049)
T ss_pred eee--eecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeecccc------------------
Confidence 445 89998875 888889999999998652 244556666666665555444
Q ss_pred ccccccccCCcEEEEEECCCcEEEEEcCCCeEEEEe-ccCCCCCeEEEEEecC-CCEEEEEecCCcEEEEECCCCceeEE
Q 007234 77 DRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRL-SDCHPGGVSAISFATH-GSCIYSAGADGMVCEIDPLTGSLLGK 154 (612)
Q Consensus 77 ~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~-~~~h~~~V~~l~~sp~-~~~l~s~s~dg~v~iwd~~~~~~~~~ 154 (612)
. ++++++|+.+|.|.|||+..-+..... ...-.+.|.+++|+.. ...|++++.+|.+.+||++..+++-.
T Consensus 128 q--------~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ 199 (1049)
T KOG0307|consen 128 Q--------GNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIK 199 (1049)
T ss_pred C--------CceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccc
Confidence 2 679999999999999999875543333 1224578999999874 34588999999999999999988888
Q ss_pred EecCCC--CeeEEEECCCC-CEEEEeC-----CeEEEEEcCCC-eeEEEEecCCCCEEEEEEeeCC-cEEEEEEcCCCeE
Q 007234 155 FRASTK--GISCMAVSSDG-KMLATAA-----GQLKTFNCSDH-KKMQKFSGHPGAVRFMTFSDNG-KYVLSSAVGERYI 224 (612)
Q Consensus 155 ~~~~~~--~v~~l~~spdg-~~l~~~~-----g~i~lwd~~~~-~~~~~~~~h~~~v~~l~~sp~~-~~l~s~s~~d~~i 224 (612)
+..+.. .+..++|+|++ ..+++++ -.|.+||++.. .+++.+.+|...|.++.|++.+ .++++++ .|+.|
T Consensus 200 ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsg-kD~~i 278 (1049)
T KOG0307|consen 200 LSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSG-KDNRI 278 (1049)
T ss_pred cccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhccc-CCCCe
Confidence 776554 57899999976 3455554 38999998854 5678889999999999999877 6777777 79999
Q ss_pred EEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcc
Q 007234 225 ALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE 285 (612)
Q Consensus 225 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~ 285 (612)
.+|+.++++.. ..+......+.-+.|++ .+...+++++.||.|.||.+....
T Consensus 279 i~wN~~tgEvl-----~~~p~~~nW~fdv~w~p----r~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 279 ICWNPNTGEVL-----GELPAQGNWCFDVQWCP----RNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred eEecCCCceEe-----eecCCCCcceeeeeecC----CCcchhhhheeccceeeeeeecCC
Confidence 99999998743 44444445555556652 455688999999999999987665
No 153
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.76 E-value=2.4e-17 Score=153.48 Aligned_cols=237 Identities=12% Similarity=0.173 Sum_probs=178.6
Q ss_pred EEEEcCC----CCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccC
Q 007234 10 LTSFSPA----LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLG 85 (612)
Q Consensus 10 ~~~fspd----g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 85 (612)
.|+|+-| .-++|.||.-|.|+|.|+.++++...+.+|+..++.+-|.+. .
T Consensus 94 tcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~--------------------------~ 147 (385)
T KOG1034|consen 94 TCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPD--------------------------R 147 (385)
T ss_pred EEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCC--------------------------C
Confidence 3455543 248899999999999999999999999999999988887776 1
Q ss_pred CcEEEEEECCCcEEEEEcCCCeEEEEec--cCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeE----------
Q 007234 86 SSLLVLGTGGGDVLALAVSAGQLKWRLS--DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLG---------- 153 (612)
Q Consensus 86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~--~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~---------- 153 (612)
.+++++|+.|..|++||+++..++..+- .+|.+.|.++.|+++|.++++|+.|.++++|++...+...
T Consensus 148 ~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~ 227 (385)
T KOG1034|consen 148 PQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSP 227 (385)
T ss_pred CcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCC
Confidence 6789999999999999999999986553 6899999999999999999999999999999997432110
Q ss_pred ------------------EEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEc-CCC-------------eeEEEEecCC
Q 007234 154 ------------------KFRASTKGISCMAVSSDGKMLATAA--GQLKTFNC-SDH-------------KKMQKFSGHP 199 (612)
Q Consensus 154 ------------------~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~-~~~-------------~~~~~~~~h~ 199 (612)
+-..|...|-|+.|- |.++++-+ +.|..|-. +-. ..+.++.-..
T Consensus 228 ~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~ 305 (385)
T KOG1034|consen 228 NKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPM 305 (385)
T ss_pred CCccCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCc
Confidence 111244555666665 57888766 89999976 211 1233444444
Q ss_pred CCEEEEEE--eeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEE
Q 007234 200 GAVRFMTF--SDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCY 277 (612)
Q Consensus 200 ~~v~~l~~--sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~ 277 (612)
..|.-+.| .|-++.|+.+. ..|.|.+||++..+... ............+.-.+|+ .||..|+..+.|++|.
T Consensus 306 c~iWfirf~~d~~~~~la~gn-q~g~v~vwdL~~~ep~~-~ttl~~s~~~~tVRQ~sfS-----~dgs~lv~vcdd~~Vw 378 (385)
T KOG1034|consen 306 CDIWFIRFAFDPWQKMLALGN-QSGKVYVWDLDNNEPPK-CTTLTHSKSGSTVRQTSFS-----RDGSILVLVCDDGTVW 378 (385)
T ss_pred cceEEEEEeecHHHHHHhhcc-CCCcEEEEECCCCCCcc-CceEEeccccceeeeeeec-----ccCcEEEEEeCCCcEE
Confidence 55666655 46677888876 79999999999877541 1222222334556667777 9999999999999999
Q ss_pred EEEC
Q 007234 278 IWYG 281 (612)
Q Consensus 278 iwd~ 281 (612)
-||.
T Consensus 379 rwdr 382 (385)
T KOG1034|consen 379 RWDR 382 (385)
T ss_pred EEEe
Confidence 9984
No 154
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=3.6e-17 Score=151.57 Aligned_cols=189 Identities=22% Similarity=0.319 Sum_probs=147.5
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcE
Q 007234 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (612)
Q Consensus 9 l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (612)
+.+-..-++.+|++++.|..|.+|+.. |+.+..+......-...+.+++ |++
T Consensus 191 i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~---------------------------GRF 242 (420)
T KOG2096|consen 191 INIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPD---------------------------GRF 242 (420)
T ss_pred EEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCC---------------------------CcE
Confidence 334666778899999999999999998 9988877643333232333333 899
Q ss_pred EEEEECCCcEEEEEcCC---CeE-----EEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCC----C---ceeE
Q 007234 89 LVLGTGGGDVLALAVSA---GQL-----KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT----G---SLLG 153 (612)
Q Consensus 89 l~~gs~~g~I~vwd~~~---~~~-----~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~----~---~~~~ 153 (612)
+++++-.-+|+||.+-- |.. ..++ .+|.+.|..++|+++...+++.|.||++++||+.- + +.++
T Consensus 243 ia~~gFTpDVkVwE~~f~kdG~fqev~rvf~L-kGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk 321 (420)
T KOG2096|consen 243 IAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSL-KGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILK 321 (420)
T ss_pred EEEecCCCCceEEEEEeccCcchhhhhhhhee-ccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhh
Confidence 99999999999999842 221 2233 68999999999999999999999999999999752 1 2222
Q ss_pred EE----ecCCCCeeEEEECCCCCEEEEeC-CeEEEEEcCCCeeEEEE-ecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEE
Q 007234 154 KF----RASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKF-SGHPGAVRFMTFSDNGKYVLSSAVGERYIALW 227 (612)
Q Consensus 154 ~~----~~~~~~v~~l~~spdg~~l~~~~-g~i~lwd~~~~~~~~~~-~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vw 227 (612)
+. ....+....++++|+|+.||.+. ..+++|..++++...++ ..|...|.+++|+++|++++++| |+.++++
T Consensus 322 ~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG--dr~vrv~ 399 (420)
T KOG2096|consen 322 EGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG--DRYVRVI 399 (420)
T ss_pred cCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec--ceeeeee
Confidence 22 11223345899999999999998 69999999999877666 46899999999999999999985 8999987
Q ss_pred E
Q 007234 228 R 228 (612)
Q Consensus 228 d 228 (612)
.
T Consensus 400 ~ 400 (420)
T KOG2096|consen 400 R 400 (420)
T ss_pred c
Confidence 6
No 155
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.76 E-value=9.2e-17 Score=155.37 Aligned_cols=208 Identities=14% Similarity=0.136 Sum_probs=159.6
Q ss_pred ceeEEEeeecccccccccCCcEEEEEECCCcEEEEEcCCCeEE---E-----------------EeccCCCCCeEEEEEe
Q 007234 67 DYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLK---W-----------------RLSDCHPGGVSAISFA 126 (612)
Q Consensus 67 ~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~---~-----------------~~~~~h~~~V~~l~~s 126 (612)
..-|+.|.....+. ...++++|+|+.+-.|.|||+.--..+ . ....+|+..|.+++|+
T Consensus 175 fPLC~ewld~~~~~--~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n 252 (463)
T KOG0270|consen 175 FPLCIEWLDHGSKS--GGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWN 252 (463)
T ss_pred cchhhhhhhcCCCC--CCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhc
Confidence 34577786652111 112889999999999999998532110 0 0113689999999998
Q ss_pred cCC-CEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEEEECCC-CCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCE
Q 007234 127 THG-SCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSD-GKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAV 202 (612)
Q Consensus 127 p~~-~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~spd-g~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v 202 (612)
..- +.|++||.|.+|++||+.+|++..++..|...|.++.|+|. ..+|++|+ +++.+.|.+.......-..-.+.|
T Consensus 253 ~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~V 332 (463)
T KOG0270|consen 253 RNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEV 332 (463)
T ss_pred cccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccce
Confidence 754 46999999999999999999999999999999999999985 56788888 999999998533222222346778
Q ss_pred EEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECC
Q 007234 203 RFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (612)
Q Consensus 203 ~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~ 282 (612)
-.++|.|.....+.++..||+++-+|++.... +++++..|...+++++++. ....++++++.|+.+++|++.
T Consensus 333 Ekv~w~~~se~~f~~~tddG~v~~~D~R~~~~----~vwt~~AHd~~ISgl~~n~----~~p~~l~t~s~d~~Vklw~~~ 404 (463)
T KOG0270|consen 333 EKVAWDPHSENSFFVSTDDGTVYYFDIRNPGK----PVWTLKAHDDEISGLSVNI----QTPGLLSTASTDKVVKLWKFD 404 (463)
T ss_pred EEEEecCCCceeEEEecCCceEEeeecCCCCC----ceeEEEeccCCcceEEecC----CCCcceeeccccceEEEEeec
Confidence 99999998776555556899999999998752 5788887888888888873 456789999999999999975
Q ss_pred Cc
Q 007234 283 NI 284 (612)
Q Consensus 283 ~~ 284 (612)
..
T Consensus 405 ~~ 406 (463)
T KOG0270|consen 405 VD 406 (463)
T ss_pred CC
Confidence 44
No 156
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.75 E-value=4.6e-17 Score=163.77 Aligned_cols=246 Identities=15% Similarity=0.192 Sum_probs=175.5
Q ss_pred CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEE--eeccCCccccccccccccccccccceeEEEeeecccc
Q 007234 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTE--FADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK 79 (612)
Q Consensus 2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~--~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~ 79 (612)
|-.+|-++ .|-|-...|++++.|.++++||+.++++... +.+|.+.+.+.+|.+. +
T Consensus 99 H~nAifDl--~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~------------------n-- 156 (720)
T KOG0321|consen 99 HKNAIFDL--KWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPT------------------N-- 156 (720)
T ss_pred ccceeEee--ccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccC------------------C--
Confidence 34566555 9999566889999999999999999998877 8899988888888776 1
Q ss_pred cccccCCcEEEEEECCCcEEEEEcCCCeEE------------------------EE--eccCCCCCeEE---EEEecCCC
Q 007234 80 KKRKLGSSLLVLGTGGGDVLALAVSAGQLK------------------------WR--LSDCHPGGVSA---ISFATHGS 130 (612)
Q Consensus 80 ~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~------------------------~~--~~~~h~~~V~~---l~~sp~~~ 130 (612)
...+++|+.||.|.|||++....- .+ -..+|...|.+ +-+..|..
T Consensus 157 ------~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~ 230 (720)
T KOG0321|consen 157 ------PAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDES 230 (720)
T ss_pred ------CcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccc
Confidence 567999999999999999643200 00 00234445555 55667888
Q ss_pred EEEEEec-CCcEEEEECCCCceeEE--------EecC---CCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCe--eEEE
Q 007234 131 CIYSAGA-DGMVCEIDPLTGSLLGK--------FRAS---TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHK--KMQK 194 (612)
Q Consensus 131 ~l~s~s~-dg~v~iwd~~~~~~~~~--------~~~~---~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~--~~~~ 194 (612)
.|+++|. |+.|++||++....... +..+ ...+.++.....|.+|++.+ +.|++||+.+-. ++..
T Consensus 231 tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~ 310 (720)
T KOG0321|consen 231 TLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAE 310 (720)
T ss_pred eeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhh
Confidence 9999997 99999999987543222 2223 23688888888888887665 999999997643 3555
Q ss_pred EecCCCCE--EEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEec
Q 007234 195 FSGHPGAV--RFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE 272 (612)
Q Consensus 195 ~~~h~~~v--~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~ 272 (612)
+.++...- ..-..+|++.++++++ .|...++|.+...+.. ..... .+..-+.++++.+. +. .-+++++.
T Consensus 311 ~sg~~~~sf~vks~lSpd~~~l~SgS-sd~~ayiw~vs~~e~~---~~~l~-Ght~eVt~V~w~pS---~~-t~v~TcSd 381 (720)
T KOG0321|consen 311 FSGKLNSSFYVKSELSPDDCSLLSGS-SDEQAYIWVVSSPEAP---PALLL-GHTREVTTVRWLPS---AT-TPVATCSD 381 (720)
T ss_pred ccCcccceeeeeeecCCCCceEeccC-CCcceeeeeecCccCC---hhhhh-CcceEEEEEeeccc---cC-CCceeecc
Confidence 55543221 1224689999999987 6999999999987654 22333 34444455666532 33 33677799
Q ss_pred CCcEEEEECCCc
Q 007234 273 TGVCYIWYGQNI 284 (612)
Q Consensus 273 dg~i~iwd~~~~ 284 (612)
|.++++|++..+
T Consensus 382 D~~~kiW~l~~~ 393 (720)
T KOG0321|consen 382 DFRVKIWRLSNG 393 (720)
T ss_pred CcceEEEeccCc
Confidence 999999998655
No 157
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=4.4e-18 Score=182.17 Aligned_cols=245 Identities=16% Similarity=0.172 Sum_probs=179.5
Q ss_pred ccceeEEEeeecccccccccCCcEEEEEECCCcEEEEEcCC---Ce---EEEEeccCCCCCeEEEEEecCCC-EEEEEec
Q 007234 65 SVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSA---GQ---LKWRLSDCHPGGVSAISFATHGS-CIYSAGA 137 (612)
Q Consensus 65 ~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~---~~---~~~~~~~~h~~~V~~l~~sp~~~-~l~s~s~ 137 (612)
...+..+.|.+...+. ..+|+.|..||.|.+||... +. .+.+. ..|.+.|.++.|++... .|++|+.
T Consensus 64 ~~rF~kL~W~~~g~~~-----~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~-~~h~G~V~gLDfN~~q~nlLASGa~ 137 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHS-----HGLIAGGLEDGNIVLYDPASIIANASEEVLATK-SKHTGPVLGLDFNPFQGNLLASGAD 137 (1049)
T ss_pred cccceeeeecccCCCc-----cceeeccccCCceEEecchhhccCcchHHHhhh-cccCCceeeeeccccCCceeeccCC
Confidence 4567788998775321 24799999999999999875 22 22233 57999999999999554 8999999
Q ss_pred CCcEEEEECCCCceeEEEe--cCCCCeeEEEECCC-CCEEEEeC--CeEEEEEcCCCeeEEEEecCCC--CEEEEEEeeC
Q 007234 138 DGMVCEIDPLTGSLLGKFR--ASTKGISCMAVSSD-GKMLATAA--GQLKTFNCSDHKKMQKFSGHPG--AVRFMTFSDN 210 (612)
Q Consensus 138 dg~v~iwd~~~~~~~~~~~--~~~~~v~~l~~spd-g~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~--~v~~l~~sp~ 210 (612)
||.|.+||+...+.-.... ...+.|.+++|+.. ..+|++++ |.+.|||++..+.+-.+..|.+ .+..+.|+|+
T Consensus 138 ~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~ 217 (1049)
T KOG0307|consen 138 DGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPD 217 (1049)
T ss_pred CCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCC
Confidence 9999999998765544442 13458999999875 45566666 8999999999988888876655 4678999998
Q ss_pred Cc-EEEEEEcCCC--eEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCccee
Q 007234 211 GK-YVLSSAVGER--YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL 287 (612)
Q Consensus 211 ~~-~l~s~s~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~ 287 (612)
+. .+++++..|+ .|.+||++..... ...+.+|...+-.+.|+ ..|.+++++++.|++|.+|+.++++.+
T Consensus 218 ~aTql~~As~dd~~PviqlWDlR~assP----~k~~~~H~~GilslsWc----~~D~~lllSsgkD~~ii~wN~~tgEvl 289 (1049)
T KOG0307|consen 218 HATQLLVASGDDSAPVIQLWDLRFASSP----LKILEGHQRGILSLSWC----PQDPRLLLSSGKDNRIICWNPNTGEVL 289 (1049)
T ss_pred CceeeeeecCCCCCceeEeecccccCCc----hhhhcccccceeeeccC----CCCchhhhcccCCCCeeEecCCCceEe
Confidence 74 4555553344 7999999876533 33444455444455555 156699999999999999999999999
Q ss_pred cccCCceeEeecccccCCCCcccchhhhcccccceecCCC
Q 007234 288 RNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPAS 327 (612)
Q Consensus 288 ~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~ 327 (612)
..+.. ...+.....|+|.... .+++++++|.+.++.
T Consensus 290 ~~~p~-~~nW~fdv~w~pr~P~---~~A~asfdgkI~I~s 325 (1049)
T KOG0307|consen 290 GELPA-QGNWCFDVQWCPRNPS---VMAAASFDGKISIYS 325 (1049)
T ss_pred eecCC-CCcceeeeeecCCCcc---hhhhheeccceeeee
Confidence 87766 3334444446666542 888899998776654
No 158
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=9.9e-17 Score=150.33 Aligned_cols=278 Identities=12% Similarity=0.148 Sum_probs=185.4
Q ss_pred CcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEec--CCCEEEEEecCCcEEEEECCCCceeEE--EecCC-C
Q 007234 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT--HGSCIYSAGADGMVCEIDPLTGSLLGK--FRAST-K 160 (612)
Q Consensus 86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp--~~~~l~s~s~dg~v~iwd~~~~~~~~~--~~~~~-~ 160 (612)
...++++..+|.|++||..+++.+..+ .++...++.+.|.. ....+.+|+.||+|++||+++...... +..+. .
T Consensus 40 e~~vav~lSngsv~lyd~~tg~~l~~f-k~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~ 118 (376)
T KOG1188|consen 40 ETAVAVSLSNGSVRLYDKGTGQLLEEF-KGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGT 118 (376)
T ss_pred ceeEEEEecCCeEEEEeccchhhhhee-cCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCC
Confidence 467999999999999999999988777 67999999999977 456699999999999999998754443 44444 4
Q ss_pred CeeEEEECCCCCEEEEeC------CeEEEEEcCCCee-EEEE-ecCCCCEEEEEEeeCCc-EEEEEEcCCCeEEEEEcCC
Q 007234 161 GISCMAVSSDGKMLATAA------GQLKTFNCSDHKK-MQKF-SGHPGAVRFMTFSDNGK-YVLSSAVGERYIALWRTDG 231 (612)
Q Consensus 161 ~v~~l~~spdg~~l~~~~------g~i~lwd~~~~~~-~~~~-~~h~~~v~~l~~sp~~~-~l~s~s~~d~~i~vwd~~~ 231 (612)
+..|++..-.++++++|. -.+.+||++..+. ++.+ ..|...|+++.|+|... .|++++ -||.|.+||+..
T Consensus 119 ~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGS-vDGLvnlfD~~~ 197 (376)
T KOG1188|consen 119 PFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGS-VDGLVNLFDTKK 197 (376)
T ss_pred cceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeec-ccceEEeeecCC
Confidence 788888887888999887 3799999998765 5544 68999999999999765 555555 799999999987
Q ss_pred CccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEe-------ec---cc
Q 007234 232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILS-------SS---ED 301 (612)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~-------~~---~~ 301 (612)
.....+ ....+ .....+..+.|. ++.-+.|.+-+..+...+|+++.+............. .+ ..
T Consensus 198 d~EeDa-L~~vi-N~~sSI~~igw~----~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~ 271 (376)
T KOG1188|consen 198 DNEEDA-LLHVI-NHGSSIHLIGWL----SKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVIN 271 (376)
T ss_pred Ccchhh-HHHhh-cccceeeeeeee----cCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheee
Confidence 643311 11222 333444555554 1443578999999999999998886443222211100 00 00
Q ss_pred ccCCCCcccchhhhcccccceecCCCceEEEEe----CCccCceEEEeec-cCCCeEEEEecCCCceEeccccceeeecc
Q 007234 302 VNSKSQKSATAAIFAAKLQDIVKPASVHTFVAY----GLLLKPSFQKILV-NSGEDINLNCSQDGVLLPMSQSLLKSKRG 376 (612)
Q Consensus 302 ~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~----g~~~~~~~~~~~~-h~~~v~~l~~S~dg~~l~~s~s~d~~~~~ 376 (612)
..+|.... . ..+++...+ .+.++... |+... ....+.+ |..-|..+.|...+.++ .||+.|+.+.+
T Consensus 272 ~~~~~~~~-~-~~l~g~~~n-----~~~~~~~~~~~s~~~~~-~~a~l~g~~~eiVR~i~~~~~~~~l-~TGGEDG~l~~ 342 (376)
T KOG1188|consen 272 EHSPGDKD-T-CALAGTDSN-----KGTIFPLVDTSSGSLLT-EPAILQGGHEEIVRDILFDVKNDVL-YTGGEDGLLQA 342 (376)
T ss_pred cccCCCcc-e-EEEeccccC-----ceeEEEeeecccccccC-ccccccCCcHHHHHHHhhhccccee-eccCCCceEEE
Confidence 01121111 1 111111111 12222211 11111 1223444 55557888888899999 99999999999
Q ss_pred eeee
Q 007234 377 RYVQ 380 (612)
Q Consensus 377 w~~~ 380 (612)
|..+
T Consensus 343 Wk~~ 346 (376)
T KOG1188|consen 343 WKVE 346 (376)
T ss_pred EecC
Confidence 9863
No 159
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.74 E-value=3.9e-17 Score=159.45 Aligned_cols=214 Identities=14% Similarity=0.160 Sum_probs=171.0
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEE
Q 007234 10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (612)
Q Consensus 10 ~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (612)
|++......|+++|+..+.|+|||++...+.+.+++|.+.|.+..|... +.+|
T Consensus 84 Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~---------------------------Deyi 136 (673)
T KOG4378|consen 84 CVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNT---------------------------DEYI 136 (673)
T ss_pred HHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCC---------------------------ccee
Confidence 4455555689999999999999999977778888888777776666655 7899
Q ss_pred EEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCE-EEEEecCCcEEEEECCCCceeEEE-ecCCCCeeEEEE
Q 007234 90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSC-IYSAGADGMVCEIDPLTGSLLGKF-RASTKGISCMAV 167 (612)
Q Consensus 90 ~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~-l~s~s~dg~v~iwd~~~~~~~~~~-~~~~~~v~~l~~ 167 (612)
++++..|+|.|..+.++.....+..+....|.-+.|+|..+. |.+++.+|.|.+||+....++..+ +.|..+...|+|
T Consensus 137 Asvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicf 216 (673)
T KOG4378|consen 137 ASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICF 216 (673)
T ss_pred EEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCccee
Confidence 999999999999999998876665555567789999997765 678899999999999877776664 568889999999
Q ss_pred CCCCCEEE-EeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeec
Q 007234 168 SSDGKMLA-TAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME 244 (612)
Q Consensus 168 spdg~~l~-~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~ 244 (612)
+|....|+ +.+ ..|.+||.+..+....+. -..|...++|+++|.+|+.+. ..|.|..||++..+.. +....
T Consensus 217 spsne~l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~-s~G~~i~YD~R~~k~P----v~v~s 290 (673)
T KOG4378|consen 217 SPSNEALLVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGN-SKGELIAYDMRSTKAP----VAVRS 290 (673)
T ss_pred cCCccceEEEecccceEEEeecccccccceee-ecCCcceeeecCCceEEEeec-CCceEEEEecccCCCC----ceEee
Confidence 99766554 444 799999999877766664 456789999999999999887 5899999999987644 34444
Q ss_pred CCceeEEeEEec
Q 007234 245 HPAVFMDCRCID 256 (612)
Q Consensus 245 ~~~~~~~~~~~~ 256 (612)
.+...+.+++|.
T Consensus 291 ah~~sVt~vafq 302 (673)
T KOG4378|consen 291 AHDASVTRVAFQ 302 (673)
T ss_pred ecccceeEEEee
Confidence 455557777775
No 160
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.74 E-value=1.2e-14 Score=152.10 Aligned_cols=323 Identities=20% Similarity=0.289 Sum_probs=216.3
Q ss_pred CcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCc-EEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ-VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (612)
Q Consensus 3 s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (612)
...|. ++.|++++..++.++.|+.+.+|+...+. ....+..... .....+.+...+
T Consensus 65 ~~~i~--~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~---- 121 (466)
T COG2319 65 EDSIT--SIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHD-----------------SSVSKLALSSPD---- 121 (466)
T ss_pred cceEE--EEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCC-----------------CceeeEEEECCC----
Confidence 34564 44999999999999999999999998887 5555543221 111222221111
Q ss_pred cccCCc-EEEEEEC-CCcEEEEEcCC-CeEEEEeccCCCCCeEEEEEecCCCEEEEEec-CCcEEEEECCCCceeEEEec
Q 007234 82 RKLGSS-LLVLGTG-GGDVLALAVSA-GQLKWRLSDCHPGGVSAISFATHGSCIYSAGA-DGMVCEIDPLTGSLLGKFRA 157 (612)
Q Consensus 82 ~~~~~~-~l~~gs~-~g~I~vwd~~~-~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~-dg~v~iwd~~~~~~~~~~~~ 157 (612)
+. .++..+. ++.+.+|+... ......+ ..|...|.+++|+|+++.+++++. |+.+++|+...+..+..+..
T Consensus 122 ----~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (466)
T COG2319 122 ----GNSILLASSSLDGTVKLWDLSTPGKLIRTL-EGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAG 196 (466)
T ss_pred ----cceEEeccCCCCccEEEEEecCCCeEEEEE-ecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeecc
Confidence 33 3444344 88999999998 5555444 579999999999999998888885 99999999999899999999
Q ss_pred CCCCeeEEEECCCCC-EEEEeC--CeEEEEEcCCCeeEE-EEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCc
Q 007234 158 STKGISCMAVSSDGK-MLATAA--GQLKTFNCSDHKKMQ-KFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (612)
Q Consensus 158 ~~~~v~~l~~spdg~-~l~~~~--g~i~lwd~~~~~~~~-~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~ 233 (612)
|...+.+++|+|++. .+++++ +.|++||...+..+. .+.+|.... ...|+|++.++++++ .|+.+++|++....
T Consensus 197 ~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~ 274 (466)
T COG2319 197 HTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGS-SDGTIRLWDLRSSS 274 (466)
T ss_pred CCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEec-CCCcEEEeeecCCC
Confidence 999999999999998 555534 899999999888887 688898885 448999998777666 79999999998776
Q ss_pred cccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccC--CceeEeecccccCCCCcccc
Q 007234 234 KQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK--ATKILSSSEDVNSKSQKSAT 311 (612)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~s~~~~~~~ 311 (612)
.. ......+...+....+. |++..+++++.|+.+.+|+..+........ .....+.... +.+++.
T Consensus 275 ~~----~~~~~~~~~~v~~~~~~-----~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--- 341 (466)
T COG2319 275 SL----LRTLSGHSSSVLSVAFS-----PDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLS-FSPDGS--- 341 (466)
T ss_pred cE----EEEEecCCccEEEEEEC-----CCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEE-ECCCCC---
Confidence 41 11112334455555776 788888889889999999988776544332 1111111111 111111
Q ss_pred hhhhcc-cccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEecc-ccceeeecceeee
Q 007234 312 AAIFAA-KLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMS-QSLLKSKRGRYVQ 380 (612)
Q Consensus 312 ~~i~~~-~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s-~s~d~~~~~w~~~ 380 (612)
.+..+ ..++.+..++ ............+. .+..+.+++ .... ++ ++.++.+.+|+..
T Consensus 342 -~~~~~~~~d~~~~~~~--------~~~~~~~~~~~~~~-~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~ 400 (466)
T COG2319 342 -LLVSGGSDDGTIRLWD--------LRTGKPLKTLEGHS-NVLSVSFSP-DGRV-VSSGSTDGTVRLWDLS 400 (466)
T ss_pred -EEEEeecCCCcEEeee--------cCCCceeEEecCCc-eEEEEEECC-CCCE-EEEecCCCceEEEecc
Confidence 22222 2222222211 11111111222222 278888888 5333 44 6888999999874
No 161
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.73 E-value=1.8e-14 Score=150.88 Aligned_cols=321 Identities=21% Similarity=0.308 Sum_probs=217.9
Q ss_pred ccceeEEEEcCCCC-EEEEEeC-CCcEEEEECCC-CcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234 5 NIRDILTSFSPALD-YFAICSG-DARIKIWDTLK-GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (612)
Q Consensus 5 ~V~~l~~~fspdg~-~las~s~-dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (612)
.+..+.+. ++++. +++..+. |+.+.+||... ......+..|...+..+.|++.
T Consensus 111 ~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----------------------- 166 (466)
T COG2319 111 SVSKLALS-SPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPD----------------------- 166 (466)
T ss_pred ceeeEEEE-CCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCC-----------------------
Confidence 45556445 88888 5555455 99999999988 7777778777766665555555
Q ss_pred cccCCcEEEEEEC-CCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCC-EEEEEecCCcEEEEECCCCceeE-EEecC
Q 007234 82 RKLGSSLLVLGTG-GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTGSLLG-KFRAS 158 (612)
Q Consensus 82 ~~~~~~~l~~gs~-~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~-~l~s~s~dg~v~iwd~~~~~~~~-~~~~~ 158 (612)
+..++.++. ++.+++|++..+..+..+ .+|...|.+++|+|++. .+++++.|+.|++||...+.... .+..|
T Consensus 167 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~ 241 (466)
T COG2319 167 ----GKLLASGSSLDGTIKLWDLRTGKPLSTL-AGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGH 241 (466)
T ss_pred ----CCEEEecCCCCCceEEEEcCCCceEEee-ccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCC
Confidence 556777775 999999999997777555 46999999999999998 56666899999999998888887 67777
Q ss_pred CCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCee-EEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccc
Q 007234 159 TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKK-MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ 235 (612)
Q Consensus 159 ~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~-~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~ 235 (612)
.... ...|+|++..+++++ +.+++|+...... +..+.+|...+.++.|.|++..+++++ .|+.+.+|+.......
T Consensus 242 ~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~~~ 319 (466)
T COG2319 242 SDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGS-SDGTVRLWDLETGKLL 319 (466)
T ss_pred Ccce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEee-CCCcEEEEEcCCCceE
Confidence 7765 448999998888776 8999999987664 555578899999999999888888866 6788999988877643
Q ss_pred cceeeEe-ecCCceeEEeEEecCCccCCCCcEEEEE-ecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchh
Q 007234 236 SASCVLA-MEHPAVFMDCRCIDNGGVDDAGLYVLAI-SETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAA 313 (612)
Q Consensus 236 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~t~-s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 313 (612)
. ... ..+.. .+..+.+. +++..++.+ ..|+.+.+|+............... ..... +.+ .. .
T Consensus 320 ~---~~~~~~~~~-~~~~~~~~-----~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~-~~----~ 383 (466)
T COG2319 320 S---SLTLKGHEG-PVSSLSFS-----PDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSN-VLSVS-FSP-DG----R 383 (466)
T ss_pred E---EeeecccCC-ceEEEEEC-----CCCCEEEEeecCCCcEEeeecCCCceeEEecCCce-EEEEE-ECC-CC----C
Confidence 1 111 12333 33344443 344555555 6789999999887762222221111 11111 122 11 1
Q ss_pred hhc-ccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceeeec
Q 007234 314 IFA-AKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN 381 (612)
Q Consensus 314 i~~-~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~~~ 381 (612)
+.. +..++.+..|+ -. ..........+...+..+.+++++..+ ++++.+.+++.|+...
T Consensus 384 ~~~~~~~~~~~~~~~-------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 384 VVSSGSTDGTVRLWD-------LS-TGSLLRNLDGHTSRVTSLDFSPDGKSL-ASGSSDNTIRLWDLKT 443 (466)
T ss_pred EEEEecCCCceEEEe-------cc-cCeeeeeccCCCCcEEEEEECCCCcEE-EEecCCCcEEEEeccC
Confidence 111 22222222222 11 111111222221578899999999999 8888899999998743
No 162
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.73 E-value=2.2e-16 Score=159.17 Aligned_cols=270 Identities=14% Similarity=0.181 Sum_probs=198.6
Q ss_pred cccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccc
Q 007234 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (612)
Q Consensus 4 ~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (612)
.-|..+ +|-|||..|+.+. +.++.|||+..|..++++++|...|.+++|+++
T Consensus 13 hci~d~--afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~d------------------------- 64 (1081)
T KOG1538|consen 13 HCINDI--AFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKD------------------------- 64 (1081)
T ss_pred cchhee--EECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccC-------------------------
Confidence 356677 9999999888776 447999999999999999999999998888888
Q ss_pred cCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCee
Q 007234 84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGIS 163 (612)
Q Consensus 84 ~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~ 163 (612)
|..+++|+.|..|.+|+..-...+ + ..|...|.|+.|+|-...|++|+... .-+|.... +.+.+.+ ....+.
T Consensus 65 --GkrFASG~aDK~VI~W~~klEG~L-k--YSH~D~IQCMsFNP~~h~LasCsLsd-FglWS~~q-K~V~K~k-ss~R~~ 136 (1081)
T KOG1538|consen 65 --GKRFASGSADKSVIIWTSKLEGIL-K--YSHNDAIQCMSFNPITHQLASCSLSD-FGLWSPEQ-KSVSKHK-SSSRII 136 (1081)
T ss_pred --CceeccCCCceeEEEeccccccee-e--eccCCeeeEeecCchHHHhhhcchhh-ccccChhh-hhHHhhh-hheeEE
Confidence 999999999999999997654433 2 35999999999999999999997543 56777543 2233322 234788
Q ss_pred EEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEE---ecCCCCEEEEEEeeCC-----cEEEEEEcCCCeEEEEEcCCCc
Q 007234 164 CMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKF---SGHPGAVRFMTFSDNG-----KYVLSSAVGERYIALWRTDGVK 233 (612)
Q Consensus 164 ~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~---~~h~~~v~~l~~sp~~-----~~l~s~s~~d~~i~vwd~~~~~ 233 (612)
+++|..||.+++.|- |+|.+-+- +++..-.+ -|..++|.+++|+|.. ..+++.. +..++..+.+....
T Consensus 137 ~CsWtnDGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~D-W~qTLSFy~LsG~~ 214 (1081)
T KOG1538|consen 137 CCSWTNDGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVAD-WGQTLSFYQLSGKQ 214 (1081)
T ss_pred EeeecCCCcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEe-ccceeEEEEeccee
Confidence 999999999999997 89988864 44433333 3577899999999853 3455554 78888888876543
Q ss_pred cccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchh
Q 007234 234 KQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAA 313 (612)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 313 (612)
.. ....+.... .++.+- ++|.+++.|+.|+.+++|.-+ |-.+.
T Consensus 215 Ig---k~r~L~FdP---~CisYf-----~NGEy~LiGGsdk~L~~fTR~-GvrLG------------------------- 257 (1081)
T KOG1538|consen 215 IG---KDRALNFDP---CCISYF-----TNGEYILLGGSDKQLSLFTRD-GVRLG------------------------- 257 (1081)
T ss_pred ec---ccccCCCCc---hhheec-----cCCcEEEEccCCCceEEEeec-CeEEe-------------------------
Confidence 21 011222222 233333 899999999999999998421 11110
Q ss_pred hhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceee
Q 007234 314 IFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (612)
Q Consensus 314 i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~ 379 (612)
++......||++...|++++. +-|..||++.-+++
T Consensus 258 ------------------------------Tvg~~D~WIWtV~~~PNsQ~v-~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 258 ------------------------------TVGEQDSWIWTVQAKPNSQYV-VVGCQDGTIACYNL 292 (1081)
T ss_pred ------------------------------eccccceeEEEEEEccCCceE-EEEEccCeeehhhh
Confidence 111122378999999999999 88889999988876
No 163
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=7.7e-16 Score=146.25 Aligned_cols=305 Identities=12% Similarity=0.086 Sum_probs=205.5
Q ss_pred CcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCC------cEEEEeeccCCccccccccccccccccccceeEEEeeec
Q 007234 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKG------QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSV 76 (612)
Q Consensus 3 s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~------~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~ 76 (612)
.+-|++| .||.+|++||+|+.|..+++|++... +.+.... .|....+.|+.|...
T Consensus 56 ~GCiNAl--qFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~-----------------~~H~SNIF~L~F~~~ 116 (609)
T KOG4227|consen 56 TGCINAL--QFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVME-----------------HPHRSNIFSLEFDLE 116 (609)
T ss_pred cccccee--eeccCCeEEeecCCcceeeeechHHHHhhcCCCCceecc-----------------CccccceEEEEEccC
Confidence 4567666 99999999999999999999998643 2222221 111244556666554
Q ss_pred ccccccccCCcEEEEEECCCcEEEEEcCCCeEEEEecc-CCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCc-eeE-
Q 007234 77 DRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSD-CHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS-LLG- 153 (612)
Q Consensus 77 ~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~-~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~-~~~- 153 (612)
+.++++|..+|+|...|+++.+.+..+.. ...+.|+.+..+|..+.|++.+.++.|.+||.+..+ ...
T Consensus 117 ---------N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~ 187 (609)
T KOG4227|consen 117 ---------NRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISL 187 (609)
T ss_pred ---------CeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCce
Confidence 67899999999999999999988765531 123589999999998999999999999999998665 222
Q ss_pred -EEecCCCCeeEEEECCCCC-EEEEeC--CeEEEEEcCCCee-EEE------EecCCCCEEEEEEeeCCcEEEEEEcCCC
Q 007234 154 -KFRASTKGISCMAVSSDGK-MLATAA--GQLKTFNCSDHKK-MQK------FSGHPGAVRFMTFSDNGKYVLSSAVGER 222 (612)
Q Consensus 154 -~~~~~~~~v~~l~~spdg~-~l~~~~--g~i~lwd~~~~~~-~~~------~~~h~~~v~~l~~sp~~~~l~s~s~~d~ 222 (612)
........+.++.|+|... +|++.+ +-+-+||.+..+. +.. ++.....-.+..|+|+|+.|++.- ...
T Consensus 188 ~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiR-R~~ 266 (609)
T KOG4227|consen 188 VLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIR-RGK 266 (609)
T ss_pred eeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhh-ccC
Confidence 2233445788999999664 555555 7899999876532 211 222122335678999999988764 344
Q ss_pred eEEEEEcCCCccccceeeEeecCCc-e-----eEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeE
Q 007234 223 YIALWRTDGVKKQSASCVLAMEHPA-V-----FMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKIL 296 (612)
Q Consensus 223 ~i~vwd~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~ 296 (612)
.-.+||+-...+. ++...|.. . .+..++| -+...+++|+.+=.|++|.+.....-..+...
T Consensus 267 ~P~~~D~~S~R~~----V~k~D~N~~GY~N~~T~KS~~F------~~D~~v~tGSD~~~i~~WklP~~~ds~G~~~I--- 333 (609)
T KOG4227|consen 267 CPLYFDFISQRCF----VLKSDHNPNGYCNIKTIKSMTF------IDDYTVATGSDHWGIHIWKLPRANDSYGFTQI--- 333 (609)
T ss_pred CCEEeeeecccce----eEeccCCCCcceeeeeeeeeee------ecceeeeccCcccceEEEecCCCccccCcccc---
Confidence 4567888775543 45555433 2 2334455 34466999999999999986544332211100
Q ss_pred eecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecc
Q 007234 297 SSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRG 376 (612)
Q Consensus 297 ~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~ 376 (612)
+. .+. . ....-.....+-.+.+|..-+..+.|+|-..+| +|.+..+++++
T Consensus 334 ----------G~----------~~~-~--------~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l-~SSGVE~~~Kl 383 (609)
T KOG4227|consen 334 ----------GH----------DEE-E--------MPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLL-VSSGVENSFKL 383 (609)
T ss_pred ----------Cc----------chh-h--------CchhheecceeEEEecccccccceeecCCcceE-eccchhhheec
Confidence 00 000 0 000001123344678999999999999999998 89889999999
Q ss_pred eee
Q 007234 377 RYV 379 (612)
Q Consensus 377 w~~ 379 (612)
|.-
T Consensus 384 WS~ 386 (609)
T KOG4227|consen 384 WSD 386 (609)
T ss_pred ccc
Confidence 964
No 164
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.73 E-value=2.3e-16 Score=150.27 Aligned_cols=208 Identities=17% Similarity=0.265 Sum_probs=162.4
Q ss_pred CCcccceeEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccc
Q 007234 2 GSSNIRDILTSFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (612)
Q Consensus 2 ~s~~V~~l~~~fsp-dg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~ 80 (612)
|.++| |-++|+| +.+.+|+||.|.+|.||.+-.+.....+. .++.. +.|| ...+..+.|.+.-
T Consensus 80 Ht~~v--LDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lt---epvv~-------L~gH-~rrVg~V~wHPtA--- 143 (472)
T KOG0303|consen 80 HTAPV--LDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLT---EPVVE-------LYGH-QRRVGLVQWHPTA--- 143 (472)
T ss_pred ccccc--cccccCccCCceeecCCCCceEEEEECCCcccccCcc---cceEE-------Eeec-ceeEEEEeecccc---
Confidence 56788 5559999 56789999999999999987665433322 11110 2233 2355677888776
Q ss_pred ccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCC
Q 007234 81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK 160 (612)
Q Consensus 81 ~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~ 160 (612)
.+.|++++.|..|.+||+.+|+.+.++. |...|++++|+.||.+|++++.|..|++||.++++.+..-.+|.+
T Consensus 144 -----~NVLlsag~Dn~v~iWnv~tgeali~l~--hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG 216 (472)
T KOG0303|consen 144 -----PNVLLSAGSDNTVSIWNVGTGEALITLD--HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEG 216 (472)
T ss_pred -----hhhHhhccCCceEEEEeccCCceeeecC--CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccC
Confidence 6789999999999999999999887763 999999999999999999999999999999999999998877776
Q ss_pred -CeeEEEECCCCCEEEEeC-----CeEEEEEcCCCe---eEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCC
Q 007234 161 -GISCMAVSSDGKMLATAA-----GQLKTFNCSDHK---KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (612)
Q Consensus 161 -~v~~l~~spdg~~l~~~~-----g~i~lwd~~~~~---~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~ 231 (612)
....+.|-.+|.++.+|- ..+-+||..+-+ ...++. ..+.|.---|.+|.+.++.+|-+|+.|+.|.+..
T Consensus 217 ~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~ 295 (472)
T KOG0303|consen 217 AKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITN 295 (472)
T ss_pred CCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcceEEEEecC
Confidence 556677888899555554 489999976543 344554 3455666677899999998988999999999887
Q ss_pred Cc
Q 007234 232 VK 233 (612)
Q Consensus 232 ~~ 233 (612)
..
T Consensus 296 d~ 297 (472)
T KOG0303|consen 296 EP 297 (472)
T ss_pred CC
Confidence 65
No 165
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.71 E-value=1.6e-15 Score=139.07 Aligned_cols=259 Identities=14% Similarity=0.109 Sum_probs=177.6
Q ss_pred CcEEEEEECCC-------cEEEEEcCCC---------eEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCC
Q 007234 86 SSLLVLGTGGG-------DVLALAVSAG---------QLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG 149 (612)
Q Consensus 86 ~~~l~~gs~~g-------~I~vwd~~~~---------~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~ 149 (612)
..+++++..+- .+.||.+... +++..+...+-+.|.|+.|.|++..+++-. |..|.+|++..+
T Consensus 76 ~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~es 154 (370)
T KOG1007|consen 76 QRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDES 154 (370)
T ss_pred CceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccC
Confidence 45566655421 2679988643 233344335667999999999999888775 889999999877
Q ss_pred ce-eEEEec-----CCCCeeEEEECC--CCCEEEEeC-CeEEEEEcCCCeeEEEE-ecCCCCEEEEEEeeCCcEEEEEEc
Q 007234 150 SL-LGKFRA-----STKGISCMAVSS--DGKMLATAA-GQLKTFNCSDHKKMQKF-SGHPGAVRFMTFSDNGKYVLSSAV 219 (612)
Q Consensus 150 ~~-~~~~~~-----~~~~v~~l~~sp--dg~~l~~~~-g~i~lwd~~~~~~~~~~-~~h~~~v~~l~~sp~~~~l~s~s~ 219 (612)
.. +..+.. +....++-+|+| ||+.+++.+ +++..||+++.+....+ ..|...|..+.|+|+.+++++++.
T Consensus 155 s~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~g 234 (370)
T KOG1007|consen 155 SKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCG 234 (370)
T ss_pred cchheeecccccccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcC
Confidence 55 333322 344678889998 889999888 89999999998776655 578889999999999886555555
Q ss_pred CCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeec
Q 007234 220 GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSS 299 (612)
Q Consensus 220 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 299 (612)
+||.|++||.+..+.. ++.+..+.-.+-++-|.+ .-.+++++++.|..|.+|...+...-..+.......-
T Consensus 235 DdgyvriWD~R~tk~p----v~el~~HsHWvW~VRfn~----~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese- 305 (370)
T KOG1007|consen 235 DDGYVRIWDTRKTKFP----VQELPGHSHWVWAVRFNP----EHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESE- 305 (370)
T ss_pred CCccEEEEeccCCCcc----ccccCCCceEEEEEEecC----ccceEEEecCCCceeEEEecccccccccccccccccc-
Confidence 8999999999987643 566666666666666762 3357899999999999998644321100000000000
Q ss_pred ccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceee
Q 007234 300 EDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (612)
Q Consensus 300 ~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~ 379 (612)
.++.. +. .+ ... ......++...|...|.+++||.-..++++|-|.||.+.+-++
T Consensus 306 ----~e~~d---------se---er----~kp-----L~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V 360 (370)
T KOG1007|consen 306 ----SEDED---------SE---ER----VKP-----LQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSV 360 (370)
T ss_pred ----Ccchh---------hH---Hh----ccc-----ccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecC
Confidence 00000 00 00 000 1123455777899999999999999999899999999877665
No 166
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.71 E-value=1.6e-15 Score=145.30 Aligned_cols=157 Identities=15% Similarity=0.241 Sum_probs=125.5
Q ss_pred CcccceeEEEEcCCCC-EEEEEeCCCcEEEEECCCCc---------EEEEeeccCCccccccccccccccccccceeEEE
Q 007234 3 SSNIRDILTSFSPALD-YFAICSGDARIKIWDTLKGQ---------VQTEFADIASTETTSLYGNRLEREHLSVDYTCMK 72 (612)
Q Consensus 3 s~~V~~l~~~fspdg~-~las~s~dg~i~iwd~~~~~---------~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 72 (612)
..||.++ .|.+++. .||+|+.|..|+||-+..+. ....+..|...++.+.|+++
T Consensus 13 ~~pv~s~--dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~-------------- 76 (434)
T KOG1009|consen 13 HEPVYSV--DFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPD-------------- 76 (434)
T ss_pred CCceEEE--EeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCC--------------
Confidence 3577555 9999876 99999999999999775332 23344555555555555555
Q ss_pred eeecccccccccCCcEEEEEECCCcEEEEEcC--------C-----C--eEEEEeccCCCCCeEEEEEecCCCEEEEEec
Q 007234 73 WLSVDRKKKRKLGSSLLVLGTGGGDVLALAVS--------A-----G--QLKWRLSDCHPGGVSAISFATHGSCIYSAGA 137 (612)
Q Consensus 73 w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~--------~-----~--~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~ 137 (612)
++++++|+.+|.|.+|-.. + . -.++....+|...|..++|+|++.++++++.
T Consensus 77 -------------gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~ 143 (434)
T KOG1009|consen 77 -------------GELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSV 143 (434)
T ss_pred -------------cCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeec
Confidence 8999999999999999876 2 1 1334555789999999999999999999999
Q ss_pred CCcEEEEECCCCceeEEEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCC
Q 007234 138 DGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSD 188 (612)
Q Consensus 138 dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~ 188 (612)
|..+++||+..|+....+..|..-+..++|.|-++++++-+ ...+.++...
T Consensus 144 dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~ 196 (434)
T KOG1009|consen 144 DNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKL 196 (434)
T ss_pred cceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeee
Confidence 99999999999999999999999999999999999998866 3455555443
No 167
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.71 E-value=1.1e-14 Score=148.34 Aligned_cols=225 Identities=16% Similarity=0.242 Sum_probs=143.8
Q ss_pred EEEeCCCcEEEEECCC-Cc--EEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEE-CCC
Q 007234 21 AICSGDARIKIWDTLK-GQ--VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGT-GGG 96 (612)
Q Consensus 21 as~s~dg~i~iwd~~~-~~--~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs-~~g 96 (612)
++...++.|++||+.+ ++ .+..+.. .+....+.++++ +++|++++ .++
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~~-~~~~~~l~~spd---------------------------~~~lyv~~~~~~ 57 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVDV-PGQVQPMVISPD---------------------------KRHLYVGVRPEF 57 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEec-CCCCccEEECCC---------------------------CCEEEEEECCCC
Confidence 3446689999999964 43 3444431 222233333333 66776665 467
Q ss_pred cEEEEEcC-CCeE--EEEeccCCCCCeEEEEEecCCCEEEEEec-CCcEEEEECCC-Cc---eeEEEecCCCCeeEEEEC
Q 007234 97 DVLALAVS-AGQL--KWRLSDCHPGGVSAISFATHGSCIYSAGA-DGMVCEIDPLT-GS---LLGKFRASTKGISCMAVS 168 (612)
Q Consensus 97 ~I~vwd~~-~~~~--~~~~~~~h~~~V~~l~~sp~~~~l~s~s~-dg~v~iwd~~~-~~---~~~~~~~~~~~v~~l~~s 168 (612)
.|.+|++. ++.. .... ...+....++|+|+++++++++. ++.|.+||+.+ +. .+..+. +...+.+++++
T Consensus 58 ~i~~~~~~~~g~l~~~~~~--~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~ 134 (330)
T PRK11028 58 RVLSYRIADDGALTFAAES--PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANID 134 (330)
T ss_pred cEEEEEECCCCceEEeeee--cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeC
Confidence 79999997 3433 2222 13345678999999999888874 88999999864 32 223332 22356788999
Q ss_pred CCCCEEEEeC---CeEEEEEcCCCeeEE-------EEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccce
Q 007234 169 SDGKMLATAA---GQLKTFNCSDHKKMQ-------KFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS 238 (612)
Q Consensus 169 pdg~~l~~~~---g~i~lwd~~~~~~~~-------~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~ 238 (612)
|+|+++++++ +.|.+||+.+...+. .... ......+.|+|+|++++++...++.|.+|+++..... ..
T Consensus 135 p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~-~~ 212 (330)
T PRK11028 135 PDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE-GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGE-IE 212 (330)
T ss_pred CCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCC-CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCC-EE
Confidence 9999998766 799999998643221 1111 2335689999999999888755899999999742111 01
Q ss_pred eeEeec-CC-----ceeEEeEEecCCccCCCCcEEEEEec-CCcEEEEECCC
Q 007234 239 CVLAME-HP-----AVFMDCRCIDNGGVDDAGLYVLAISE-TGVCYIWYGQN 283 (612)
Q Consensus 239 ~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~l~t~s~-dg~i~iwd~~~ 283 (612)
.+.... .+ ......+.++ |++++++++.. ++.|.+|++..
T Consensus 213 ~~~~~~~~p~~~~~~~~~~~i~~~-----pdg~~lyv~~~~~~~I~v~~i~~ 259 (330)
T PRK11028 213 CVQTLDMMPADFSDTRWAADIHIT-----PDGRHLYACDRTASLISVFSVSE 259 (330)
T ss_pred EEEEEecCCCcCCCCccceeEEEC-----CCCCEEEEecCCCCeEEEEEEeC
Confidence 122211 11 1111234455 99999999865 78999998754
No 168
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.70 E-value=1.4e-15 Score=145.00 Aligned_cols=207 Identities=17% Similarity=0.228 Sum_probs=161.0
Q ss_pred cccccccceeEEEeeecccccccccCCcEEEEEECCCcEEEEEcCCCeEE------EEeccCCCCCeEEEEEecC-CCEE
Q 007234 60 EREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLK------WRLSDCHPGGVSAISFATH-GSCI 132 (612)
Q Consensus 60 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~------~~~~~~h~~~V~~l~~sp~-~~~l 132 (612)
.+||.. .+-.+.|.|++ ...|++|+.|.+|.||.+..+... ...+.+|...|--+.|+|. .+.|
T Consensus 77 v~GHt~-~vLDi~w~Pfn--------D~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVL 147 (472)
T KOG0303|consen 77 VCGHTA-PVLDIDWCPFN--------DCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVL 147 (472)
T ss_pred ccCccc-cccccccCccC--------CceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhH
Confidence 345533 44567898887 889999999999999999765432 2334689999999999994 4579
Q ss_pred EEEecCCcEEEEECCCCceeEEEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCC-EEEEEEee
Q 007234 133 YSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGA-VRFMTFSD 209 (612)
Q Consensus 133 ~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~-v~~l~~sp 209 (612)
++++.|.+|.+||+.+|+.+-++. |..-|+++.|+.||.++++++ ..|+|||.++++.+.+-.+|.+. -....|-.
T Consensus 148 lsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~ 226 (472)
T KOG0303|consen 148 LSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLA 226 (472)
T ss_pred hhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEec
Confidence 999999999999999999988888 999999999999999999998 79999999999999988888763 44567888
Q ss_pred CCcEEEEEEc---CCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEec-CCcEEEEECCCcc
Q 007234 210 NGKYVLSSAV---GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-TGVCYIWYGQNIE 285 (612)
Q Consensus 210 ~~~~l~s~s~---~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~-dg~i~iwd~~~~~ 285 (612)
+|. ++++|. .++.+-+||...-+.. .....++....+ -.-++. +|.+.+..++. |+.|+.|.+..-.
T Consensus 227 ~g~-i~tTGfsr~seRq~aLwdp~nl~eP--~~~~elDtSnGv-l~PFyD-----~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 227 SGK-IFTTGFSRMSERQIALWDPNNLEEP--IALQELDTSNGV-LLPFYD-----PDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred cCc-eeeeccccccccceeccCcccccCc--ceeEEeccCCce-EEeeec-----CCCCEEEEEecCCcceEEEEecCCC
Confidence 888 566552 2678999998776543 133344433333 334444 88888777665 9999999976654
No 169
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.70 E-value=1.6e-16 Score=158.02 Aligned_cols=243 Identities=15% Similarity=0.148 Sum_probs=180.7
Q ss_pred cccceeEEEEcCCCCEEEEEeCCCcEEEEECC--------CCcEEEEeeccCCccccccccccccccccccceeEEEeee
Q 007234 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTL--------KGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLS 75 (612)
Q Consensus 4 ~~V~~l~~~fspdg~~las~s~dg~i~iwd~~--------~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~ 75 (612)
.-||.+ +|.|....|++++.||+|++|+++ .-+.+.+|.+|.++|.|.++...
T Consensus 295 d~ir~l--~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n----------------- 355 (577)
T KOG0642|consen 295 DCIRAL--AFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSN----------------- 355 (577)
T ss_pred hhhhhh--hcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCC-----------------
Confidence 456777 899999999999999999999993 22467889999999998888877
Q ss_pred cccccccccCCcEEEEEECCCcEEEEEcCCCe---------EEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEEC
Q 007234 76 VDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQ---------LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDP 146 (612)
Q Consensus 76 ~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~---------~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~ 146 (612)
+..+++|+-||+|+.|++..+. .+...+.||++.|+.+++|+....|++|+.||+|+.|+.
T Consensus 356 ----------~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~ 425 (577)
T KOG0642|consen 356 ----------GEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEP 425 (577)
T ss_pred ----------ceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeecc
Confidence 8899999999999999665221 233445799999999999999889999999999999998
Q ss_pred CCCceeEEEecCC--CCeeEEEECCCCCEEEEeC---CeEEEEEcCCCeeEEEEecC-------CCCEEEEEEeeCCcEE
Q 007234 147 LTGSLLGKFRAST--KGISCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGH-------PGAVRFMTFSDNGKYV 214 (612)
Q Consensus 147 ~~~~~~~~~~~~~--~~v~~l~~spdg~~l~~~~---g~i~lwd~~~~~~~~~~~~h-------~~~v~~l~~sp~~~~l 214 (612)
....+ .+|.... +-..++.+-.....+..++ +.--++++.....+..+... ...+..+.++|.+.+.
T Consensus 426 ~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~ 504 (577)
T KOG0642|consen 426 TEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADIT 504 (577)
T ss_pred CCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCee
Confidence 76655 4444322 2345666653332233333 33344455544444444321 1346778889999888
Q ss_pred EEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCccee
Q 007234 215 LSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL 287 (612)
Q Consensus 215 ~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~ 287 (612)
+++. .|+.|+++|..+++.. .....+...+++.++. |+|-+|++++.||.+.+|.+.....+
T Consensus 505 ~~~h-ed~~Ir~~dn~~~~~l-----~s~~a~~~svtslai~-----~ng~~l~s~s~d~sv~l~kld~k~~~ 566 (577)
T KOG0642|consen 505 FTAH-EDRSIRFFDNKTGKIL-----HSMVAHKDSVTSLAID-----PNGPYLMSGSHDGSVRLWKLDVKTCV 566 (577)
T ss_pred Eecc-cCCceecccccccccc-----hheeeccceecceeec-----CCCceEEeecCCceeehhhccchhee
Confidence 8775 8999999999998754 4445566667777787 99999999999999999987655544
No 170
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.70 E-value=7.2e-16 Score=152.08 Aligned_cols=231 Identities=15% Similarity=0.247 Sum_probs=167.1
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEE
Q 007234 10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (612)
Q Consensus 10 ~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (612)
||.|+.+...+.++ .|..+.+|+-.+........-.... ..+.+. +.....++..+...+
T Consensus 19 ~v~w~~~eei~~~~-dDh~~~~~~~~~~~s~~~~~~p~df-----------------~pt~~h--~~~rs~~~g~~~d~~ 78 (737)
T KOG1524|consen 19 CVDWSSNEEIYFVS-DDHQIFKWSDVSRDSVEVAKLPDDF-----------------VPTDMH--LGGRSSGGGKGSDTL 78 (737)
T ss_pred eecccccceEEEec-cCceEEEeecccchhhhhhhCCccc-----------------CCcccc--ccccccCCCCCcceE
Confidence 66788877766555 4666666654444433333211111 111111 111111222236789
Q ss_pred EEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEEEECC
Q 007234 90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSS 169 (612)
Q Consensus 90 ~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~sp 169 (612)
+++++||.+.+.+-. ++....+ .+|.+.+.+-.|+|||.-|++++.||.|++|. ++|-...++.....+|.|++|.|
T Consensus 79 ~i~s~DGkf~il~k~-~rVE~sv-~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p 155 (737)
T KOG1524|consen 79 LICSNDGRFVILNKS-ARVERSI-SAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAP 155 (737)
T ss_pred EEEcCCceEEEeccc-chhhhhh-hhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECC
Confidence 999999999888743 4443333 68999999999999999999999999999999 67776666666778999999999
Q ss_pred CCCEEEEe-CCeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCce
Q 007234 170 DGKMLATA-AGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAV 248 (612)
Q Consensus 170 dg~~l~~~-~g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 248 (612)
+.+-++.+ ++.+.+=.+.....+-+.+.|.+-|.++.|+|....++++| +|-..++||..... .+....+..
T Consensus 156 ~S~~vl~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgG-ED~kfKvWD~~G~~------Lf~S~~~ey 228 (737)
T KOG1524|consen 156 NSNSIVFCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGG-EDFRFKIWDAQGAN------LFTSAAEEY 228 (737)
T ss_pred CCCceEEecCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecC-CceeEEeecccCcc------cccCChhcc
Confidence 87665555 48999888888777788899999999999999999999998 89999999987653 455667788
Q ss_pred eEEeEEecCCccCCCCcEEEEEecCCcEE
Q 007234 249 FMDCRCIDNGGVDDAGLYVLAISETGVCY 277 (612)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~l~t~s~dg~i~ 277 (612)
.++.++|. |+ ..++.+|.. +++
T Consensus 229 ~ITSva~n-----pd-~~~~v~S~n-t~R 250 (737)
T KOG1524|consen 229 AITSVAFN-----PE-KDYLLWSYN-TAR 250 (737)
T ss_pred ceeeeeec-----cc-cceeeeeee-eee
Confidence 88999997 88 556666553 444
No 171
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=7.9e-16 Score=144.34 Aligned_cols=190 Identities=12% Similarity=0.201 Sum_probs=144.2
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEECCCc
Q 007234 18 DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGD 97 (612)
Q Consensus 18 ~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~ 97 (612)
+.+|++...|.|++||..+|+.+..|+++...+..+.|... + ....+.+|+.||.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~------------------d-------s~h~v~s~ssDG~ 95 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISC------------------D-------SPHGVISCSSDGT 95 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecC------------------C-------CCCeeEEeccCCe
Confidence 45888888999999999999999999988877776666543 1 0677999999999
Q ss_pred EEEEEcCCCeEEEEec-cCCC-CCeEEEEEecCCCEEEEEe----cCCcEEEEECCCCce-eEE-EecCCCCeeEEEECC
Q 007234 98 VLALAVSAGQLKWRLS-DCHP-GGVSAISFATHGSCIYSAG----ADGMVCEIDPLTGSL-LGK-FRASTKGISCMAVSS 169 (612)
Q Consensus 98 I~vwd~~~~~~~~~~~-~~h~-~~V~~l~~sp~~~~l~s~s----~dg~v~iwd~~~~~~-~~~-~~~~~~~v~~l~~sp 169 (612)
|++||++......++. .+|. .+-.+++.+..++.+++|. .|-.|.+||++..+. +.. ...|...|++++|+|
T Consensus 96 Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP 175 (376)
T KOG1188|consen 96 VRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHP 175 (376)
T ss_pred EEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecC
Confidence 9999999876654443 3344 4567777766677777764 466899999998766 554 456888999999999
Q ss_pred C-CCEEEEeC--CeEEEEEcCCCee---EEEEecCCCCEEEEEEeeCC-cEEEEEEcCCCeEEEEEcCCCc
Q 007234 170 D-GKMLATAA--GQLKTFNCSDHKK---MQKFSGHPGAVRFMTFSDNG-KYVLSSAVGERYIALWRTDGVK 233 (612)
Q Consensus 170 d-g~~l~~~~--g~i~lwd~~~~~~---~~~~~~h~~~v~~l~~sp~~-~~l~s~s~~d~~i~vwd~~~~~ 233 (612)
. -++|++|+ |.|.+||++.... +...-.|...|.++.|..++ +.+.+-+ ...+..+|+++.+.
T Consensus 176 ~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clT-H~Etf~~~ele~~~ 245 (376)
T KOG1188|consen 176 SDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLT-HMETFAIYELEDGS 245 (376)
T ss_pred CCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEE-ccCceeEEEccCCC
Confidence 4 57888888 9999999976522 22233577889999999887 2345544 68889999987664
No 172
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.69 E-value=2.8e-14 Score=135.50 Aligned_cols=232 Identities=14% Similarity=0.158 Sum_probs=171.8
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEE
Q 007234 11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV 90 (612)
Q Consensus 11 ~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~ 90 (612)
..|+.|...|..|+.||. ++|+.......... ......+.-+.|. ..+++
T Consensus 11 ~~~Nqd~~~lsvGs~~Gy-k~~~~~~~~k~~~~------------------~~~~~~IvEmLFS-----------SSLva 60 (391)
T KOG2110|consen 11 IGFNQDSTLLSVGSKDGY-KIFSCSPFEKCFSK------------------DTEGVSIVEMLFS-----------SSLVA 60 (391)
T ss_pred eeeccceeEEEccCCCce-eEEecCchHHhhcc------------------cCCCeEEEEeecc-----------cceeE
Confidence 379999999999999985 88887654331110 0001112222222 45667
Q ss_pred EEECCCc--EEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecC---CCCeeEE
Q 007234 91 LGTGGGD--VLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS---TKGISCM 165 (612)
Q Consensus 91 ~gs~~g~--I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~---~~~v~~l 165 (612)
+.+.+.. +++++.+.+..+..+. ....|.++.++. +.|+++=. ..|++||+++-+.++++... ..++.++
T Consensus 61 iV~~~qpr~Lkv~~~Kk~~~ICe~~--fpt~IL~VrmNr--~RLvV~Le-e~IyIydI~~MklLhTI~t~~~n~~gl~Al 135 (391)
T KOG2110|consen 61 IVSIKQPRKLKVVHFKKKTTICEIF--FPTSILAVRMNR--KRLVVCLE-ESIYIYDIKDMKLLHTIETTPPNPKGLCAL 135 (391)
T ss_pred EEecCCCceEEEEEcccCceEEEEe--cCCceEEEEEcc--ceEEEEEc-ccEEEEecccceeehhhhccCCCccceEee
Confidence 6666443 8999999988887764 457799999964 46777754 44999999999999887653 3467777
Q ss_pred EECCCCCEEEEeC----CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeE
Q 007234 166 AVSSDGKMLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVL 241 (612)
Q Consensus 166 ~~spdg~~l~~~~----g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~ 241 (612)
++++.+.+++.-+ |.|.+||+.+-+.+..+..|.+++.+++|+++|.+|++++.....|+|+.+.++++. ..+
T Consensus 136 S~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl---~eF 212 (391)
T KOG2110|consen 136 SPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKL---YEF 212 (391)
T ss_pred ccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEe---eee
Confidence 7777778998654 899999999999999999999999999999999999999843335899999998754 223
Q ss_pred eecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcc
Q 007234 242 AMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE 285 (612)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~ 285 (612)
..+....-+..++|+ +++.+|++.+..++|++|.++...
T Consensus 213 RRG~~~~~IySL~Fs-----~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 213 RRGTYPVSIYSLSFS-----PDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred eCCceeeEEEEEEEC-----CCCCeEEEecCCCeEEEEEecccc
Confidence 222233445556776 999999999999999999987655
No 173
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.68 E-value=1.4e-15 Score=144.17 Aligned_cols=190 Identities=14% Similarity=0.183 Sum_probs=147.9
Q ss_pred CcEEEEEECCCcEEEEEcCC----------------CeEEEEeccCCCCCeEEEEEecC-CCEEEEEecCCcEEEEECCC
Q 007234 86 SSLLVLGTGGGDVLALAVSA----------------GQLKWRLSDCHPGGVSAISFATH-GSCIYSAGADGMVCEIDPLT 148 (612)
Q Consensus 86 ~~~l~~gs~~g~I~vwd~~~----------------~~~~~~~~~~h~~~V~~l~~sp~-~~~l~s~s~dg~v~iwd~~~ 148 (612)
..+.++-+..|.|+||++.. .+.+.++ .+|...=++++|||- ...|++|.--+.|++|...+
T Consensus 165 ~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~-~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~ 243 (440)
T KOG0302|consen 165 EVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTF-NGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPST 243 (440)
T ss_pred cceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEe-cccCccceeeecccccccccccCccccceEeeeecc
Confidence 45667778889999999853 1234444 578888899999992 22488887788899999888
Q ss_pred Ccee---EEEecCCCCeeEEEECCCCC-EEEEeC--CeEEEEEcCCCee--EEEEecCCCCEEEEEEeeCCcEEEEEEcC
Q 007234 149 GSLL---GKFRASTKGISCMAVSSDGK-MLATAA--GQLKTFNCSDHKK--MQKFSGHPGAVRFMTFSDNGKYVLSSAVG 220 (612)
Q Consensus 149 ~~~~---~~~~~~~~~v~~l~~spdg~-~l~~~~--g~i~lwd~~~~~~--~~~~~~h~~~v~~l~~sp~~~~l~s~s~~ 220 (612)
|.-. ..|.+|...|..++|||..+ .+++++ |+|+|||++.+.. ....+.|.+.|+-|.|+..-.+|++++ .
T Consensus 244 g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~-D 322 (440)
T KOG0302|consen 244 GSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGG-D 322 (440)
T ss_pred CceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecC-C
Confidence 7532 23667899999999999654 556666 9999999998822 223388999999999999888888887 7
Q ss_pred CCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCC
Q 007234 221 ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN 283 (612)
Q Consensus 221 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~ 283 (612)
||+++|||++.-+.. .++..+..+...++++.|.+ .+...|++++.|.+|.+||+..
T Consensus 323 dGt~~iwDLR~~~~~--~pVA~fk~Hk~pItsieW~p----~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 323 DGTLSIWDLRQFKSG--QPVATFKYHKAPITSIEWHP----HEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred CceEEEEEhhhccCC--CcceeEEeccCCeeEEEecc----ccCceEEeccCCCcEEEEEeec
Confidence 999999999876543 35667777888888888873 3557788899999999999743
No 174
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.68 E-value=2.5e-15 Score=137.90 Aligned_cols=208 Identities=15% Similarity=0.230 Sum_probs=153.6
Q ss_pred cccceeEEEEcCCC-----CEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccc
Q 007234 4 SNIRDILTSFSPAL-----DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDR 78 (612)
Q Consensus 4 ~~V~~l~~~fspdg-----~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~ 78 (612)
=|++.+ -|.||. ++||+++ ..+|+|.+...+...... ...+.. ...+.....|+..|...+
T Consensus 97 YP~tK~--~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~--------~~L~~~-kns~~~aPlTSFDWne~d- 162 (364)
T KOG0290|consen 97 YPVTKL--MWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQ--------SVLNNN-KNSEFCAPLTSFDWNEVD- 162 (364)
T ss_pred CCccce--EecCCccccCcchhhccc--CeEEEEeccCcCCceehh--------hhhccC-cccccCCcccccccccCC-
Confidence 366667 899986 3677765 379999987432111111 001111 234556678899999887
Q ss_pred ccccccCCcEEEEEECCCcEEEEEcCCCeE--EEEeccCCCCCeEEEEEecCC-CEEEEEecCCcEEEEECCCCceeEEE
Q 007234 79 KKKRKLGSSLLVLGTGGGDVLALAVSAGQL--KWRLSDCHPGGVSAISFATHG-SCIYSAGADGMVCEIDPLTGSLLGKF 155 (612)
Q Consensus 79 ~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~--~~~~~~~h~~~V~~l~~sp~~-~~l~s~s~dg~v~iwd~~~~~~~~~~ 155 (612)
.++|.+.+-|-+..|||++++.. +.+-+-+|...|.+++|...+ +.|+++|.||.||+||++..+.-..+
T Consensus 163 -------p~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTII 235 (364)
T KOG0290|consen 163 -------PNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTII 235 (364)
T ss_pred -------cceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEE
Confidence 67899999999999999999743 333335899999999999854 46899999999999999877554433
Q ss_pred ec-C--CCCeeEEEECC-CCCEEEEeC---CeEEEEEcCCC-eeEEEEecCCCCEEEEEEeeCCc-EEEEEEcCCCeEEE
Q 007234 156 RA-S--TKGISCMAVSS-DGKMLATAA---GQLKTFNCSDH-KKMQKFSGHPGAVRFMTFSDNGK-YVLSSAVGERYIAL 226 (612)
Q Consensus 156 ~~-~--~~~v~~l~~sp-dg~~l~~~~---g~i~lwd~~~~-~~~~~~~~h~~~v~~l~~sp~~~-~l~s~s~~d~~i~v 226 (612)
.. . ..+...++|++ |-+++|+-. ..|.+.|++.. .++.++.+|.+.|+.++|.|... .+.++| +|..+.+
T Consensus 236 YE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaG-DD~qali 314 (364)
T KOG0290|consen 236 YEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAG-DDCQALI 314 (364)
T ss_pred ecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecC-CcceEEE
Confidence 22 2 34788899987 446666544 79999999865 56899999999999999999654 677776 7999999
Q ss_pred EEcCCCc
Q 007234 227 WRTDGVK 233 (612)
Q Consensus 227 wd~~~~~ 233 (612)
||+...-
T Consensus 315 WDl~q~~ 321 (364)
T KOG0290|consen 315 WDLQQMP 321 (364)
T ss_pred Eeccccc
Confidence 9997643
No 175
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.68 E-value=2.2e-15 Score=150.61 Aligned_cols=223 Identities=13% Similarity=0.132 Sum_probs=170.1
Q ss_pred CcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCE--EEEEecCCcEEEEECCCC--------------
Q 007234 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSC--IYSAGADGMVCEIDPLTG-------------- 149 (612)
Q Consensus 86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~--l~s~s~dg~v~iwd~~~~-------------- 149 (612)
+..|++|+.||+|+||.+.+|.|++++. ..+.|.|++|+|.+.. |+++ ...++.+.+..-|
T Consensus 412 G~wlasGsdDGtvriWEi~TgRcvr~~~--~d~~I~~vaw~P~~~~~vLAvA-~~~~~~ivnp~~G~~~e~~~t~ell~~ 488 (733)
T KOG0650|consen 412 GEWLASGSDDGTVRIWEIATGRCVRTVQ--FDSEIRSVAWNPLSDLCVLAVA-VGECVLIVNPIFGDRLEVGPTKELLAS 488 (733)
T ss_pred cceeeecCCCCcEEEEEeecceEEEEEe--ecceeEEEEecCCCCceeEEEE-ecCceEEeCccccchhhhcchhhhhhc
Confidence 8999999999999999999999998874 5578999999997654 4443 3333444432211
Q ss_pred -----------------------ceeEEEecCCCCeeEEEECCCCCEEEEeC-----CeEEEEEcCCCeeEEEEecCCCC
Q 007234 150 -----------------------SLLGKFRASTKGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKKMQKFSGHPGA 201 (612)
Q Consensus 150 -----------------------~~~~~~~~~~~~v~~l~~spdg~~l~~~~-----g~i~lwd~~~~~~~~~~~~h~~~ 201 (612)
.-++..-.|...|..+.|+..|.||++.. ..|.|+++...+...-|.-..+.
T Consensus 489 ~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~ 568 (733)
T KOG0650|consen 489 APNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGL 568 (733)
T ss_pred CCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCc
Confidence 00122223667899999999999999876 48999999877666666666778
Q ss_pred EEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEEC
Q 007234 202 VRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (612)
Q Consensus 202 v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~ 281 (612)
|.++.|+|...+|++++ .+.|++||+...... ..+......++..+.. |.|..|+.++.|+.+..||+
T Consensus 569 vq~v~FHPs~p~lfVaT--q~~vRiYdL~kqelv-----KkL~tg~kwiS~msih-----p~GDnli~gs~d~k~~WfDl 636 (733)
T KOG0650|consen 569 VQRVKFHPSKPYLFVAT--QRSVRIYDLSKQELV-----KKLLTGSKWISSMSIH-----PNGDNLILGSYDKKMCWFDL 636 (733)
T ss_pred eeEEEecCCCceEEEEe--ccceEEEehhHHHHH-----HHHhcCCeeeeeeeec-----CCCCeEEEecCCCeeEEEEc
Confidence 99999999999999875 678999999886532 2333455566667776 99999999999999999997
Q ss_pred CCcceecccCCceeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCC
Q 007234 282 QNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDG 361 (612)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg 361 (612)
.-... ..+++..|...+.+++|.+.-
T Consensus 637 dlssk------------------------------------------------------Pyk~lr~H~~avr~Va~H~ry 662 (733)
T KOG0650|consen 637 DLSSK------------------------------------------------------PYKTLRLHEKAVRSVAFHKRY 662 (733)
T ss_pred ccCcc------------------------------------------------------hhHHhhhhhhhhhhhhhcccc
Confidence 54321 012566788889999999988
Q ss_pred ceEeccccceeeeccee
Q 007234 362 VLLPMSQSLLKSKRGRY 378 (612)
Q Consensus 362 ~~l~~s~s~d~~~~~w~ 378 (612)
.++ +|||+|+++.+.-
T Consensus 663 PLf-as~sdDgtv~Vfh 678 (733)
T KOG0650|consen 663 PLF-ASGSDDGTVIVFH 678 (733)
T ss_pred cee-eeecCCCcEEEEe
Confidence 888 9999999998874
No 176
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.67 E-value=1.1e-14 Score=156.58 Aligned_cols=255 Identities=14% Similarity=0.160 Sum_probs=162.6
Q ss_pred CCcccceeEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEeeccC-CccccccccccccccccccceeEEEeeecccc
Q 007234 2 GSSNIRDILTSFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIA-STETTSLYGNRLEREHLSVDYTCMKWLSVDRK 79 (612)
Q Consensus 2 ~s~~V~~l~~~fsp-dg~~las~s~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~ 79 (612)
|++.|..+ +.++ ++.+|++||.||+|++||.+.-. ++. ..-....|++. .....++.....
T Consensus 1047 hs~~v~k~--a~s~~~~s~FvsgS~DGtVKvW~~~k~~------~~~~s~rS~ltys~~------~sr~~~vt~~~~--- 1109 (1431)
T KOG1240|consen 1047 HSSAVIKL--AVSSEHTSLFVSGSDDGTVKVWNLRKLE------GEGGSARSELTYSPE------GSRVEKVTMCGN--- 1109 (1431)
T ss_pred ccccccce--eecCCCCceEEEecCCceEEEeeehhhh------cCcceeeeeEEEecc------CCceEEEEeccC---
Confidence 45666656 5555 55999999999999999986321 110 00011122211 122233332222
Q ss_pred cccccCCcEEEEEECCCcEEEEEcCCCeEE------EEeccC-CCCCeEEE-EEec-CCC-EEEEEecCCcEEEEECCCC
Q 007234 80 KKRKLGSSLLVLGTGGGDVLALAVSAGQLK------WRLSDC-HPGGVSAI-SFAT-HGS-CIYSAGADGMVCEIDPLTG 149 (612)
Q Consensus 80 ~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~------~~~~~~-h~~~V~~l-~~sp-~~~-~l~s~s~dg~v~iwd~~~~ 149 (612)
++.+|+++.||.|.+.++...... .+.... ..+.+.++ +|.. .+. .++.+...+.|..||+++.
T Consensus 1110 ------~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~ 1183 (1431)
T KOG1240|consen 1110 ------GDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMR 1183 (1431)
T ss_pred ------CCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhh
Confidence 788999999999999998762211 111111 23334433 3433 233 6777888899999999887
Q ss_pred ceeEEEec--CCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEe-cCCCCEEEEEEeeC---CcEEEEEEc-C
Q 007234 150 SLLGKFRA--STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS-GHPGAVRFMTFSDN---GKYVLSSAV-G 220 (612)
Q Consensus 150 ~~~~~~~~--~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~-~h~~~v~~l~~sp~---~~~l~s~s~-~ 220 (612)
.....++. ..+.|++++.+|.+.+++.|. |.+.+||++=+.++.... ++..++..+..+|- ....+++++ .
T Consensus 1184 ~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~ 1263 (1431)
T KOG1240|consen 1184 HDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSS 1263 (1431)
T ss_pred hhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccC
Confidence 66555443 356899999999999999998 999999999887776653 44577888777653 356666665 5
Q ss_pred CCeEEEEEcCCCccccceeeEeec---------CCc--------eeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCC
Q 007234 221 ERYIALWRTDGVKKQSASCVLAME---------HPA--------VFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN 283 (612)
Q Consensus 221 d~~i~vwd~~~~~~~~~~~~~~~~---------~~~--------~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~ 283 (612)
.+.|.+|++.++.... ++... .+. .......+. ..+.++.+|+.|..|+.||...
T Consensus 1264 ~nevs~wn~~~g~~~~---vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~-----~~~~~~ltggsd~kIR~wD~~~ 1335 (1431)
T KOG1240|consen 1264 NNEVSTWNMETGLRQT---VLWASDGAPILSYALPSNDARKPDSLAGISCGVC-----EKNGFLLTGGSDMKIRKWDPTR 1335 (1431)
T ss_pred CCceeeeecccCcceE---EEEcCCCCcchhhhcccccCCCCCcccceeeecc-----cCCceeeecCCccceeeccCCC
Confidence 7789999999986441 11111 000 011112222 4567899999999999999776
Q ss_pred ccee
Q 007234 284 IEEL 287 (612)
Q Consensus 284 ~~~~ 287 (612)
.+..
T Consensus 1336 p~~s 1339 (1431)
T KOG1240|consen 1336 PEIS 1339 (1431)
T ss_pred cccc
Confidence 5543
No 177
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.66 E-value=3.8e-16 Score=155.45 Aligned_cols=248 Identities=17% Similarity=0.186 Sum_probs=168.9
Q ss_pred cCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCC--------CceeEEEecCCCCeeEEEECCCCCEEEEeC--CeEEE
Q 007234 114 DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT--------GSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKT 183 (612)
Q Consensus 114 ~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~--------~~~~~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~l 183 (612)
..|...|+.+.|+|....|++|+.||++++|+++. -+++.+|++|.++|.|+++.+.+.++++|+ |+|+.
T Consensus 291 ~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~ 370 (577)
T KOG0642|consen 291 RSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRC 370 (577)
T ss_pred ecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeee
Confidence 45888999999999999999999999999999932 267889999999999999999999999999 99999
Q ss_pred EEcCCC----------eeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeE
Q 007234 184 FNCSDH----------KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCR 253 (612)
Q Consensus 184 wd~~~~----------~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (612)
|++... .....+.||...|+.+++|+....|++++ .||+++.|+...... +++...........+
T Consensus 371 w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs-~DgTvr~w~~~~~~~----~~f~~~~e~g~Plsv 445 (577)
T KOG0642|consen 371 WNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCS-SDGTVRLWEPTEESP----CTFGEPKEHGYPLSV 445 (577)
T ss_pred eccCCCCCcccccCcchhccceeccccceeeeeecccccceeeec-CCceEEeeccCCcCc----cccCCccccCCcceE
Confidence 965421 23456789999999999999988999987 699999999877654 233333222233333
Q ss_pred EecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEee---cc---cccCCCCcccchhhhcccccceecCCC
Q 007234 254 CIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSS---SE---DVNSKSQKSATAAIFAAKLQDIVKPAS 327 (612)
Q Consensus 254 ~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~---~~---~~~s~~~~~~~~~i~~~~~d~~~~~~~ 327 (612)
.+. +.+-.+.++...-+.-.+++.+.+..+........... .. .+.-|.. +..+++..+..++.+|
T Consensus 446 d~~----ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~----~~~~~~hed~~Ir~~d 517 (577)
T KOG0642|consen 446 DRT----SSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTA----DITFTAHEDRSIRFFD 517 (577)
T ss_pred eec----cchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCC----CeeEecccCCceeccc
Confidence 332 01112222222233333444444433332221111000 00 0011111 2555666666666655
Q ss_pred ceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceeeecce
Q 007234 328 VHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNRV 383 (612)
Q Consensus 328 ~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~~~~~ 383 (612)
+...........|...+.++++.|+|-+| +++++|+++++|+...+.
T Consensus 518 --------n~~~~~l~s~~a~~~svtslai~~ng~~l-~s~s~d~sv~l~kld~k~ 564 (577)
T KOG0642|consen 518 --------NKTGKILHSMVAHKDSVTSLAIDPNGPYL-MSGSHDGSVRLWKLDVKT 564 (577)
T ss_pred --------ccccccchheeeccceecceeecCCCceE-EeecCCceeehhhccchh
Confidence 33333334666788899999999999999 999999999999885543
No 178
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.66 E-value=1.1e-14 Score=152.42 Aligned_cols=251 Identities=12% Similarity=0.119 Sum_probs=179.5
Q ss_pred CcccceeEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEE--EEeeccCCccccccccccccccccccceeEEEeeecccc
Q 007234 3 SSNIRDILTSFSP-ALDYFAICSGDARIKIWDTLKGQVQ--TEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK 79 (612)
Q Consensus 3 s~~V~~l~~~fsp-dg~~las~s~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~ 79 (612)
+++| .|++|+| +..++|.|+.+|+|.+||++.+... ..+.. ........++.+.|.....
T Consensus 242 ~s~v--~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~--------------~~~sh~~~v~~vvW~~~~~- 304 (555)
T KOG1587|consen 242 PSEV--TCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSA--------------LEVSHSEPVTAVVWLQNEH- 304 (555)
T ss_pred CCce--eEEEeccCCcceEEeeccCceEEEEEccCCCCCCCccccc--------------ccccCCcCeEEEEEeccCC-
Confidence 4667 5669999 5577888888999999999877652 21111 1122355677888876422
Q ss_pred cccccCCcEEEEEECCCcEEEEEcCCCeEE------EEec-----cCCCCCeEEEEEec-CCCEEEEEecCCcEEEEECC
Q 007234 80 KKRKLGSSLLVLGTGGGDVLALAVSAGQLK------WRLS-----DCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPL 147 (612)
Q Consensus 80 ~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~------~~~~-----~~h~~~V~~l~~sp-~~~~l~s~s~dg~v~iwd~~ 147 (612)
+.-+++++.||.|..|+++.-... .... ..-...+++++|.+ +-..|+.|+.+|.|..-+-.
T Consensus 305 ------~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~ 378 (555)
T KOG1587|consen 305 ------NTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRK 378 (555)
T ss_pred ------CCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEecc
Confidence 356889999999999988643221 0000 01234689999988 44569999999998874322
Q ss_pred C---C-----ceeEEEecCCCCeeEEEECCCCCEEE-EeC-CeEEEEEcC-CCeeEEEEecCCCCEEEEEEeeCCcEEEE
Q 007234 148 T---G-----SLLGKFRASTKGISCMAVSSDGKMLA-TAA-GQLKTFNCS-DHKKMQKFSGHPGAVRFMTFSDNGKYVLS 216 (612)
Q Consensus 148 ~---~-----~~~~~~~~~~~~v~~l~~spdg~~l~-~~~-g~i~lwd~~-~~~~~~~~~~h~~~v~~l~~sp~~~~l~s 216 (612)
. + +....+..|.++|+++.++|-+..++ +++ .+++||... ...++..+..+...|++++|||....++.
T Consensus 379 g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~ 458 (555)
T KOG1587|consen 379 GYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFA 458 (555)
T ss_pred CCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEE
Confidence 2 2 12334566788999999999665444 444 799999988 66778888888888999999998877666
Q ss_pred EEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCc
Q 007234 217 SAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (612)
Q Consensus 217 ~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~ 284 (612)
+...||.+.+||+...... ++....-...+...+.++ +.|+.|++|...|++++|++...
T Consensus 459 ~~d~~G~l~iWDLl~~~~~---Pv~s~~~~~~~l~~~~~s-----~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 459 TVDGDGNLDIWDLLQDDEE---PVLSQKVCSPALTRVRWS-----PNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred EEcCCCceehhhhhccccC---CcccccccccccceeecC-----CCCcEEEEecCCCcEEEEEcCch
Confidence 6668999999999876544 333333336666777776 88999999999999999998543
No 179
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=2.8e-14 Score=127.85 Aligned_cols=226 Identities=13% Similarity=0.187 Sum_probs=159.6
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCc----------EEEEeeccCCccccccccccccccccccceeEEEeeecccc
Q 007234 10 LTSFSPALDYFAICSGDARIKIWDTLKGQ----------VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK 79 (612)
Q Consensus 10 ~~~fspdg~~las~s~dg~i~iwd~~~~~----------~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~ 79 (612)
+-++||.+++|+.|..+|.|.+..+.+-. .+-.++.|.+++....|.
T Consensus 15 ~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~----------------------- 71 (325)
T KOG0649|consen 15 AQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH----------------------- 71 (325)
T ss_pred HHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee-----------------------
Confidence 34899999999999999999999875321 222334455544443333
Q ss_pred cccccCCcEEEEEECCCcEEEEEcCCCeE------EEEe-ccCCC-----CCeEEEEEecCCCEEEEEecCCcEEEEECC
Q 007234 80 KKRKLGSSLLVLGTGGGDVLALAVSAGQL------KWRL-SDCHP-----GGVSAISFATHGSCIYSAGADGMVCEIDPL 147 (612)
Q Consensus 80 ~~~~~~~~~l~~gs~~g~I~vwd~~~~~~------~~~~-~~~h~-----~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~ 147 (612)
..+++ .+.||.|+-|..+.-.. +++. ..-|. -.|+++...|..+-++.++.|+.++.||++
T Consensus 72 ------d~~Ll-s~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE 144 (325)
T KOG0649|consen 72 ------DDFLL-SGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLE 144 (325)
T ss_pred ------hhhee-eccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEec
Confidence 22344 44559999887754322 1111 11222 358899999988788888899999999999
Q ss_pred CCceeEEEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCC----------CCEEEEEEeeCCcEEE
Q 007234 148 TGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHP----------GAVRFMTFSDNGKYVL 215 (612)
Q Consensus 148 ~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~----------~~v~~l~~sp~~~~l~ 215 (612)
+|+..+++++|.+-+.++.-......+++|+ |++++||.++++.+..+.... ..|.+++ -+..+++
T Consensus 145 ~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala--~~edWlv 222 (325)
T KOG0649|consen 145 DGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALA--VNEDWLV 222 (325)
T ss_pred CCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEe--ccCceEE
Confidence 9999999999999999999866666777877 999999999999988774221 2244444 4566888
Q ss_pred EEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECC
Q 007234 216 SSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (612)
Q Consensus 216 s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~ 282 (612)
+++ ...+.+|.++..+.. +++.+..+... +.|. ...++++++.+.+.-|.+.
T Consensus 223 CGg--Gp~lslwhLrsse~t---~vfpipa~v~~---v~F~-------~d~vl~~G~g~~v~~~~l~ 274 (325)
T KOG0649|consen 223 CGG--GPKLSLWHLRSSEST---CVFPIPARVHL---VDFV-------DDCVLIGGEGNHVQSYTLN 274 (325)
T ss_pred ecC--CCceeEEeccCCCce---EEEecccceeE---eeee-------cceEEEeccccceeeeeec
Confidence 764 567999999998754 66666554433 3342 2567888888888888754
No 180
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=2.1e-15 Score=145.56 Aligned_cols=193 Identities=21% Similarity=0.188 Sum_probs=154.6
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEE
Q 007234 10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (612)
Q Consensus 10 ~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (612)
+++|++||..+|+|+.||++|||++.+...+.....|...|.++.|+++ +.+|
T Consensus 149 ~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~d---------------------------gk~l 201 (398)
T KOG0771|consen 149 VVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPD---------------------------GKFL 201 (398)
T ss_pred EEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCC---------------------------CcEE
Confidence 5599999999999999999999999888888888889999999999998 8899
Q ss_pred EEEECCCcEEEEEcCCCeEEEEec-cCCCCCeEEEEEecCC---CE--EEEEecCCcEEEEECCCCce-----eEEEecC
Q 007234 90 VLGTGGGDVLALAVSAGQLKWRLS-DCHPGGVSAISFATHG---SC--IYSAGADGMVCEIDPLTGSL-----LGKFRAS 158 (612)
Q Consensus 90 ~~gs~~g~I~vwd~~~~~~~~~~~-~~h~~~V~~l~~sp~~---~~--l~s~s~dg~v~iwd~~~~~~-----~~~~~~~ 158 (612)
++-+.+ ..+||++++|..+.+.. .........+.|+.|+ .+ ++....-+.|+.||+...+. .++....
T Consensus 202 asig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~ 280 (398)
T KOG0771|consen 202 ASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKR 280 (398)
T ss_pred EEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhc
Confidence 999999 99999999997765554 3344567788898877 33 33334556777777643221 1111122
Q ss_pred CCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEE-ecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCC
Q 007234 159 TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKF-SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (612)
Q Consensus 159 ~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~-~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~ 231 (612)
...|+++++++||++++.|+ |.|-+++..+.+.++-+ +.|...|+.+.|+||.+++++.+ .|....+..+.-
T Consensus 281 ~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svS-s~~~~~v~~l~v 355 (398)
T KOG0771|consen 281 FKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVS-SDNEAAVTKLAV 355 (398)
T ss_pred cCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccc-cCCceeEEEEee
Confidence 34799999999999999999 99999999988887666 57999999999999999999987 587888877654
No 181
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.65 E-value=1.1e-13 Score=140.97 Aligned_cols=236 Identities=10% Similarity=0.069 Sum_probs=150.5
Q ss_pred EEEEcCCCCEEEEEe-CCCcEEEEECC-CCcEE--EEeeccCCccccccccccccccccccceeEEEeeecccccccccC
Q 007234 10 LTSFSPALDYFAICS-GDARIKIWDTL-KGQVQ--TEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLG 85 (612)
Q Consensus 10 ~~~fspdg~~las~s-~dg~i~iwd~~-~~~~~--~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 85 (612)
.++++||+++|++++ .++.|.+|++. ++... .... ..+ ....+.+.+.
T Consensus 39 ~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~------------------~p~~i~~~~~--------- 90 (330)
T PRK11028 39 PMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPG------------------SPTHISTDHQ--------- 90 (330)
T ss_pred cEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCC------------------CceEEEECCC---------
Confidence 349999999987765 47899999986 34432 1111 011 1122333332
Q ss_pred CcEEEEEE-CCCcEEEEEcCCCe----EEEEeccCCCCCeEEEEEecCCCEEEEEe-cCCcEEEEECCCCceeE-----E
Q 007234 86 SSLLVLGT-GGGDVLALAVSAGQ----LKWRLSDCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPLTGSLLG-----K 154 (612)
Q Consensus 86 ~~~l~~gs-~~g~I~vwd~~~~~----~~~~~~~~h~~~V~~l~~sp~~~~l~s~s-~dg~v~iwd~~~~~~~~-----~ 154 (612)
++++++++ .++.|.+|++.+.. .+..+ .+.....+++++|+++++++++ .++.|.+||+.+...+. .
T Consensus 91 g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~--~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~ 168 (330)
T PRK11028 91 GRFLFSASYNANCVSVSPLDKDGIPVAPIQII--EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAE 168 (330)
T ss_pred CCEEEEEEcCCCeEEEEEECCCCCCCCceeec--cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCc
Confidence 66666665 47789999997432 22221 2334567889999999986665 56999999997633221 1
Q ss_pred Eec-CCCCeeEEEECCCCCEEEEeC---CeEEEEEcCC--C--eeEEEEecCC------CCEEEEEEeeCCcEEEEEEcC
Q 007234 155 FRA-STKGISCMAVSSDGKMLATAA---GQLKTFNCSD--H--KKMQKFSGHP------GAVRFMTFSDNGKYVLSSAVG 220 (612)
Q Consensus 155 ~~~-~~~~v~~l~~spdg~~l~~~~---g~i~lwd~~~--~--~~~~~~~~h~------~~v~~l~~sp~~~~l~s~s~~ 220 (612)
... .......+.|+|+|++++++. ++|.+|+++. + +.+..+..+. .....+.|+|++++++++...
T Consensus 169 ~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~ 248 (330)
T PRK11028 169 VTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRT 248 (330)
T ss_pred eecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCC
Confidence 111 233567899999999998876 8999999973 3 3344443221 123468899999999988656
Q ss_pred CCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEec-CCcEEEEECC
Q 007234 221 ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-TGVCYIWYGQ 282 (612)
Q Consensus 221 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~-dg~i~iwd~~ 282 (612)
++.|.+|++...... ...+..... ......+.++ |+|++|++++. +++|.+|+++
T Consensus 249 ~~~I~v~~i~~~~~~-~~~~~~~~~-~~~p~~~~~~-----~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 249 ASLISVFSVSEDGSV-LSFEGHQPT-ETQPRGFNID-----HSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred CCeEEEEEEeCCCCe-EEEeEEEec-cccCCceEEC-----CCCCEEEEEEccCCcEEEEEEc
Confidence 789999999654321 001111111 1122334565 99999998876 8899999864
No 182
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.64 E-value=2.5e-15 Score=150.91 Aligned_cols=239 Identities=14% Similarity=0.178 Sum_probs=168.6
Q ss_pred EcCCCCEEEE--EeCCCcEEEEECCCC-cEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEE
Q 007234 13 FSPALDYFAI--CSGDARIKIWDTLKG-QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (612)
Q Consensus 13 fspdg~~las--~s~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (612)
|..+..++|. .+..|.|-||++..- ++-- .+... -.....++.+.|.+++ ...+
T Consensus 587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPD-------gv~p~--------l~Ngt~vtDl~WdPFD--------~~rL 643 (1012)
T KOG1445|consen 587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPD-------GVMPG--------LFNGTLVTDLHWDPFD--------DERL 643 (1012)
T ss_pred eeeccceEEEEecCCCceEEEEEcCCCCCCCc-------ccccc--------cccCceeeecccCCCC--------hHHe
Confidence 3444555553 455789999998642 2211 11101 1124468889999998 6789
Q ss_pred EEEECCCcEEEEEcCCCeEE------EEeccCCCCCeEEEEEec-CCCEEEEEecCCcEEEEECCCCceeEEEecCCCCe
Q 007234 90 VLGTGGGDVLALAVSAGQLK------WRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI 162 (612)
Q Consensus 90 ~~gs~~g~I~vwd~~~~~~~------~~~~~~h~~~V~~l~~sp-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v 162 (612)
++++.||.|++|.+..+... ...+..|...|+++.|+| ....|++++.|.+|++||+.+++....+.+|.+.|
T Consensus 644 AVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqI 723 (1012)
T KOG1445|consen 644 AVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQI 723 (1012)
T ss_pred eecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCce
Confidence 99999999999999765321 234467999999999999 45679999999999999999999999999999999
Q ss_pred eEEEECCCCCEEEEeC--CeEEEEEcCCCe-eEEEEecCC-CCEEEEEEeeCCcEEEEEEcCC----CeEEEEEcCCCcc
Q 007234 163 SCMAVSSDGKMLATAA--GQLKTFNCSDHK-KMQKFSGHP-GAVRFMTFSDNGKYVLSSAVGE----RYIALWRTDGVKK 234 (612)
Q Consensus 163 ~~l~~spdg~~l~~~~--g~i~lwd~~~~~-~~~~~~~h~-~~v~~l~~sp~~~~l~s~s~~d----~~i~vwd~~~~~~ 234 (612)
..++|+|||+.+++.+ |+|++|+.++++ ++++-.|.. ..-..|.|.-+|+++++.|. | +.|.+||..+-..
T Consensus 724 f~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gf-dk~SeRQv~~Y~Aq~l~~ 802 (1012)
T KOG1445|consen 724 FGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGF-DKSSERQVQMYDAQTLDL 802 (1012)
T ss_pred eEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecc-cccchhhhhhhhhhhccC
Confidence 9999999999999988 999999998764 344433322 22346889999999998874 4 4688998876543
Q ss_pred ccceeeEeecCCceeEEeEEecCCccCCCC-cEEEEEecCCcEEEEECC
Q 007234 235 QSASCVLAMEHPAVFMDCRCIDNGGVDDAG-LYVLAISETGVCYIWYGQ 282 (612)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~t~s~dg~i~iwd~~ 282 (612)
. ...+..++..... .+.+. ++|. ..+++|-.|..|.+|.+-
T Consensus 803 ~-pl~t~~lDvaps~--LvP~Y----D~Ds~~lfltGKGD~~v~~yEv~ 844 (1012)
T KOG1445|consen 803 R-PLYTQVLDVAPSP--LVPHY----DYDSNVLFLTGKGDRFVNMYEVI 844 (1012)
T ss_pred C-cceeeeecccCcc--ccccc----cCCCceEEEecCCCceEEEEEec
Confidence 2 1122222221111 11111 2444 456677779999999854
No 183
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.64 E-value=1.1e-14 Score=133.48 Aligned_cols=199 Identities=14% Similarity=0.214 Sum_probs=152.1
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCcE-EEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcE
Q 007234 10 LTSFSPALDYFAICSGDARIKIWDTLKGQV-QTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (612)
Q Consensus 10 ~~~fspdg~~las~s~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (612)
|+-|.|++..+|+-. |..|.+|+.+.+.. +.++....+. + .....+.-.|.|.. +..
T Consensus 128 cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~------------e-~~~~ftsg~WspHH--------dgn 185 (370)
T KOG1007|consen 128 CVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESA------------E-MRHSFTSGAWSPHH--------DGN 185 (370)
T ss_pred eEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccc------------c-ccceecccccCCCC--------ccc
Confidence 559999999998776 88999999998776 4444321110 0 12345566787754 334
Q ss_pred EEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCE-EEEEecCCcEEEEECCCC-ceeEEEecCCCCeeEEE
Q 007234 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSC-IYSAGADGMVCEIDPLTG-SLLGKFRASTKGISCMA 166 (612)
Q Consensus 89 l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~-l~s~s~dg~v~iwd~~~~-~~~~~~~~~~~~v~~l~ 166 (612)
-+....++++..||+++..+...+..+|...|..+.|+|+.++ |++|+.||.|++||++.- .++.++.+|...|+++.
T Consensus 186 qv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VR 265 (370)
T KOG1007|consen 186 QVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVR 265 (370)
T ss_pred eEEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEE
Confidence 5667788999999999999988998999999999999998765 889999999999999754 57888999999999999
Q ss_pred ECCCCC-EEEEeC--CeEEEEEcCCC-----------------------------eeEEEEecCCCCEEEEEEeeCCcEE
Q 007234 167 VSSDGK-MLATAA--GQLKTFNCSDH-----------------------------KKMQKFSGHPGAVRFMTFSDNGKYV 214 (612)
Q Consensus 167 ~spdg~-~l~~~~--g~i~lwd~~~~-----------------------------~~~~~~~~h~~~v~~l~~sp~~~~l 214 (612)
|+|.-. ++++|+ ..|.+|....- ..+.++..|...|++++||.-..++
T Consensus 266 fn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWi 345 (370)
T KOG1007|consen 266 FNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWI 345 (370)
T ss_pred ecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCee
Confidence 999654 455555 57777754210 1234677899999999999888877
Q ss_pred EEEEcCCCeEEEEEcC
Q 007234 215 LSSAVGERYIALWRTD 230 (612)
Q Consensus 215 ~s~s~~d~~i~vwd~~ 230 (612)
+++-+.||.+.|=.+.
T Consensus 346 FASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 346 FASLSYDGRVIISSVP 361 (370)
T ss_pred EEEeccCceEEeecCC
Confidence 7666689998775543
No 184
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.64 E-value=6e-15 Score=137.34 Aligned_cols=225 Identities=12% Similarity=0.202 Sum_probs=160.9
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEE
Q 007234 14 SPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGT 93 (612)
Q Consensus 14 spdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs 93 (612)
.|+..++|+.+.+.-|++||.-+|+....+..-..... --...++.|.+. +..|+.|
T Consensus 120 qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de-------------~taAhsL~Fs~D---------GeqlfaG- 176 (406)
T KOG2919|consen 120 QPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDE-------------YTAAHSLQFSPD---------GEQLFAG- 176 (406)
T ss_pred CCccceeeeccccCceeeeeccccccccchhhhhhHHh-------------hhhheeEEecCC---------CCeEeec-
Confidence 37788999999999999999999999887753221000 001223344333 6666655
Q ss_pred CCCcEEEEEc-CCCeEE--E-Ee---ccCCCCCeEEEEEec-CCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEE
Q 007234 94 GGGDVLALAV-SAGQLK--W-RL---SDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCM 165 (612)
Q Consensus 94 ~~g~I~vwd~-~~~~~~--~-~~---~~~h~~~V~~l~~sp-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l 165 (612)
....|++||+ +.|... . ++ ..+..+-|.+++|+| +...++.++...++-++.-..++++..+-+|.+.|+.+
T Consensus 177 ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL 256 (406)
T KOG2919|consen 177 YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHL 256 (406)
T ss_pred ccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeE
Confidence 4567999999 444321 1 11 123467789999999 45589999999998888888889999999999999999
Q ss_pred EECCCCCEEEEeC---CeEEEEEcCCC-eeEEEEecCCC-CEEEEE--EeeCCcEEEEEEcCCCeEEEEEcCC-Cccccc
Q 007234 166 AVSSDGKMLATAA---GQLKTFNCSDH-KKMQKFSGHPG-AVRFMT--FSDNGKYVLSSAVGERYIALWRTDG-VKKQSA 237 (612)
Q Consensus 166 ~~spdg~~l~~~~---g~i~lwd~~~~-~~~~~~~~h~~-~v~~l~--~sp~~~~l~s~s~~d~~i~vwd~~~-~~~~~~ 237 (612)
+|.++|+.|++|. ..|..||++.. .++..+..|.. .-..|- ..|++++|++++ .||.|++||+.+ +...
T Consensus 257 ~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~-tdG~V~vwdlk~~gn~~-- 333 (406)
T KOG2919|consen 257 QWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGD-TDGSVRVWDLKDLGNEV-- 333 (406)
T ss_pred EeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccC-CCccEEEEecCCCCCcc--
Confidence 9999999999998 68999999864 56777777765 333444 468999999886 799999999988 4322
Q ss_pred eeeEeecCCceeEEeEEecCCccCCCCcEEEEEec
Q 007234 238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE 272 (612)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~ 272 (612)
.........+..+.+. |--.++++++.
T Consensus 334 ---sv~~~~sd~vNgvsln-----P~mpilatssG 360 (406)
T KOG2919|consen 334 ---SVTGNYSDTVNGVSLN-----PIMPILATSSG 360 (406)
T ss_pred ---cccccccccccceecC-----cccceeeeccC
Confidence 2334445555666665 55455555544
No 185
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=1.3e-13 Score=144.50 Aligned_cols=270 Identities=14% Similarity=0.150 Sum_probs=178.7
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccc----cccceeEEEeeeccccccc---
Q 007234 10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREH----LSVDYTCMKWLSVDRKKKR--- 82 (612)
Q Consensus 10 ~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~----~~~~~~~~~w~~~~~~~~~--- 82 (612)
...||+|+++++.+. +..|+||...+|.++..+.+|..++....+.+...... .+.......|.-.++.-.+
T Consensus 21 ~avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~ 99 (792)
T KOG1963|consen 21 PAVFSNDAKFLFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFD 99 (792)
T ss_pred ccccccCCcEEEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEe
Confidence 457999999888776 55899999999999999999988888777766511100 0011111122211110000
Q ss_pred ------------------------------------cc--------------------------------CCcEEEEEEC
Q 007234 83 ------------------------------------KL--------------------------------GSSLLVLGTG 94 (612)
Q Consensus 83 ------------------------------------~~--------------------------------~~~~l~~gs~ 94 (612)
+. +...+.....
T Consensus 100 ~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~ 179 (792)
T KOG1963|consen 100 NNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVH 179 (792)
T ss_pred cCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEE
Confidence 00 0000111111
Q ss_pred CCcEEEEEcCCCeE---EEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEE-CC-CC--ceeEEEecCCCCeeEEEE
Q 007234 95 GGDVLALAVSAGQL---KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEID-PL-TG--SLLGKFRASTKGISCMAV 167 (612)
Q Consensus 95 ~g~I~vwd~~~~~~---~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd-~~-~~--~~~~~~~~~~~~v~~l~~ 167 (612)
+..+.+|+...+.. .+.....|.-.+++.++||+++++++|..||.|.+|. +. ++ .....+.-|...|.+++|
T Consensus 180 ~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~f 259 (792)
T KOG1963|consen 180 MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSF 259 (792)
T ss_pred eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEE
Confidence 22234444443221 0111124667789999999999999999999999995 33 12 344567778899999999
Q ss_pred CCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEee--
Q 007234 168 SSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAM-- 243 (612)
Q Consensus 168 spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~-- 243 (612)
+++|.+|++|+ |.+-+|.+.+++ .+-++.-.++|..+.++||+.+..... .|..|.+-...+..... .+..+
T Consensus 260 S~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~-~DNqI~li~~~dl~~k~--tIsgi~~ 335 (792)
T KOG1963|consen 260 SSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVL-EDNQIHLIKASDLEIKS--TISGIKP 335 (792)
T ss_pred ecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEe-cCceEEEEeccchhhhh--hccCccC
Confidence 99999999999 899999999998 444566778999999999999887776 79999998775443221 01111
Q ss_pred ------cCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecc
Q 007234 244 ------EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRN 289 (612)
Q Consensus 244 ------~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~ 289 (612)
.........++++ |..+.++-.+..|.|.+||+.+.+.+..
T Consensus 336 ~~~~~k~~~~~l~t~~~id-----pr~~~~vln~~~g~vQ~ydl~td~~i~~ 382 (792)
T KOG1963|consen 336 PTPSTKTRPQSLTTGVSID-----PRTNSLVLNGHPGHVQFYDLYTDSTIYK 382 (792)
T ss_pred CCccccccccccceeEEEc-----CCCCceeecCCCceEEEEeccccceeee
Confidence 1123445556665 7667788889999999999988776643
No 186
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=3.1e-13 Score=141.81 Aligned_cols=292 Identities=12% Similarity=0.121 Sum_probs=196.8
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEE-CC-CCc--EEEEeeccCCccccccccccccccccccceeEEEeeeccccccccc
Q 007234 9 ILTSFSPALDYFAICSGDARIKIWD-TL-KGQ--VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (612)
Q Consensus 9 l~~~fspdg~~las~s~dg~i~iwd-~~-~~~--~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (612)
-|.++||+++++|+|..||+|.+|. .. ++. ..+.+-=|...|.++.|+.+
T Consensus 209 t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~-------------------------- 262 (792)
T KOG1963|consen 209 TCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSD-------------------------- 262 (792)
T ss_pred eeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecC--------------------------
Confidence 3569999999999999999999995 32 111 11122223344444444444
Q ss_pred CCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEec---C---
Q 007234 85 GSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA---S--- 158 (612)
Q Consensus 85 ~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~---~--- 158 (612)
|.+|++|+..|-+.+|.+.+++ +++++.-.++|..+.++||+.+......|+.|.+....+.....++.+ .
T Consensus 263 -G~~LlSGG~E~VLv~Wq~~T~~--kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~ 339 (792)
T KOG1963|consen 263 -GAYLLSGGREGVLVLWQLETGK--KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPS 339 (792)
T ss_pred -CceEeecccceEEEEEeecCCC--cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCcc
Confidence 8999999999999999999998 467777889999999999999999999999999987655443333332 1
Q ss_pred -----CCCeeEEEECCC-CCEEEEeC-CeEEEEEcCCCeeEEEEe-----cC------CCCEEEEEEeeCCcEEEEEEc-
Q 007234 159 -----TKGISCMAVSSD-GKMLATAA-GQLKTFNCSDHKKMQKFS-----GH------PGAVRFMTFSDNGKYVLSSAV- 219 (612)
Q Consensus 159 -----~~~v~~l~~spd-g~~l~~~~-g~i~lwd~~~~~~~~~~~-----~h------~~~v~~l~~sp~~~~l~s~s~- 219 (612)
.+-.+.++++|. +..++.|. |.|.+||+-+.+.+.++. .+ .-.++.++.+..|.++++.-.
T Consensus 340 ~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~ 419 (792)
T KOG1963|consen 340 TKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEAR 419 (792)
T ss_pred ccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeee
Confidence 334677889994 44444555 999999998887666553 11 224666777777888887531
Q ss_pred ------CCC--eEEEEEcCCCcccc-ceeeEeecCCceeEEeEEecCCccCCCCc-EEEEEecCCcEEEEECCCcceecc
Q 007234 220 ------GER--YIALWRTDGVKKQS-ASCVLAMEHPAVFMDCRCIDNGGVDDAGL-YVLAISETGVCYIWYGQNIEELRN 289 (612)
Q Consensus 220 ------~d~--~i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~t~s~dg~i~iwd~~~~~~~~~ 289 (612)
.|| .+++|........- .......+|....+..+... +... ..++++.||.+++|-+...+.+..
T Consensus 420 ~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~-----~~rs~~~vta~~dg~~KiW~~~~~~n~~k 494 (792)
T KOG1963|consen 420 IDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLN-----PTRSVRCVTASVDGDFKIWVFTDDSNIYK 494 (792)
T ss_pred ehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEec-----CcccceeEEeccCCeEEEEEEecccccCc
Confidence 222 57889876654321 01122334555555555444 3333 899999999999998765544321
Q ss_pred cCCceeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEecccc
Q 007234 290 TKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQS 369 (612)
Q Consensus 290 ~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s 369 (612)
. ...+.|.. .-..|...+.+++||.||..| +.|
T Consensus 495 ~---~s~W~c~~------------------------------------------i~sy~k~~i~a~~fs~dGsll--a~s 527 (792)
T KOG1963|consen 495 K---SSNWTCKA------------------------------------------IGSYHKTPITALCFSQDGSLL--AVS 527 (792)
T ss_pred C---ccceEEee------------------------------------------eeccccCcccchhhcCCCcEE--EEe
Confidence 1 11111100 011366689999999999765 566
Q ss_pred ceeeecceeeec
Q 007234 370 LLKSKRGRYVQN 381 (612)
Q Consensus 370 ~d~~~~~w~~~~ 381 (612)
.|+++.+|+..+
T Consensus 528 ~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 528 FDDTITIWDYDT 539 (792)
T ss_pred cCCEEEEecCCC
Confidence 789999998855
No 187
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.61 E-value=1.3e-12 Score=124.30 Aligned_cols=144 Identities=19% Similarity=0.355 Sum_probs=120.5
Q ss_pred cEEEEEECCCcEEEEEcCCCeEEEEeccC--CCCCeEEEEEecCCCEEEEEe--cCCcEEEEECCCCceeEEEecCCCCe
Q 007234 87 SLLVLGTGGGDVLALAVSAGQLKWRLSDC--HPGGVSAISFATHGSCIYSAG--ADGMVCEIDPLTGSLLGKFRASTKGI 162 (612)
Q Consensus 87 ~~l~~gs~~g~I~vwd~~~~~~~~~~~~~--h~~~V~~l~~sp~~~~l~s~s--~dg~v~iwd~~~~~~~~~~~~~~~~v 162 (612)
+.++++-.+. |+|||+++-+.+.++..- |...+.++++++++.+++--+ ..|.|.+||..+-+++.++.+|++.+
T Consensus 98 ~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~l 176 (391)
T KOG2110|consen 98 KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPL 176 (391)
T ss_pred ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCce
Confidence 3455555544 999999999998777543 667788888888777877543 46889999999999999999999999
Q ss_pred eEEEECCCCCEEEEeC--C-eEEEEEcCCCeeEEEEecCC--CCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCC
Q 007234 163 SCMAVSSDGKMLATAA--G-QLKTFNCSDHKKMQKFSGHP--GAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (612)
Q Consensus 163 ~~l~~spdg~~l~~~~--g-~i~lwd~~~~~~~~~~~~h~--~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~ 232 (612)
.+++|+++|.+||+++ | .|||+.+.+|+.+.+|+.-. ..|.+++|+|++++|.+++ ..++|.+|.+...
T Consensus 177 Aalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS-~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 177 AALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASS-NTETVHIFKLEKV 250 (391)
T ss_pred eEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEec-CCCeEEEEEeccc
Confidence 9999999999999999 5 68999999999999996433 3577999999999988887 6899999998654
No 188
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.61 E-value=6e-15 Score=133.72 Aligned_cols=279 Identities=11% Similarity=0.070 Sum_probs=177.6
Q ss_pred CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (612)
Q Consensus 2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (612)
+++.|+++ .|..+++ |.+|..-|.|++|++++.+....+..+.. .++.|...-+
T Consensus 13 ~~~~v~s~--~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~--------------------~~it~lq~~p--- 66 (323)
T KOG0322|consen 13 HSSSVTSV--LFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGR--------------------LFITNLQSIP--- 66 (323)
T ss_pred ccchheeh--hhccchh-hhcccccceEEEEEeecCccchhhhhhcc--------------------ceeeceeecC---
Confidence 45667555 8888776 77899999999999999887766652221 1222322221
Q ss_pred cccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCC-----C----EEEEEecCC-cEEEEECCCCce
Q 007234 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHG-----S----CIYSAGADG-MVCEIDPLTGSL 151 (612)
Q Consensus 82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~-----~----~l~s~s~dg-~v~iwd~~~~~~ 151 (612)
+..+.+-+.|+.+.+|++.-+..+ ..|+-.++++.|.+.. + .++.-+... .+.+-|......
T Consensus 67 ----~d~l~tqgRd~~L~lw~ia~s~~i----~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tq 138 (323)
T KOG0322|consen 67 ----NDSLDTQGRDPLLILWTIAYSAFI----SIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQ 138 (323)
T ss_pred ----CcchhhcCCCceEEEEEccCcceE----EEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccce
Confidence 456778888999999999876554 2355555666665421 1 111111000 012222211112
Q ss_pred eEEEe----cCCCCeeEEEECC-CCC-EEEE-eC--CeEEEEEcCCCe----------eEEEEecCCCCEEEEEEeeCCc
Q 007234 152 LGKFR----ASTKGISCMAVSS-DGK-MLAT-AA--GQLKTFNCSDHK----------KMQKFSGHPGAVRFMTFSDNGK 212 (612)
Q Consensus 152 ~~~~~----~~~~~v~~l~~sp-dg~-~l~~-~~--g~i~lwd~~~~~----------~~~~~~~h~~~v~~l~~sp~~~ 212 (612)
+.... ...+.+.|..+.. ++. .++. |. |.+.+||+.++. .+.....|.++|.++.|.+.-.
T Consensus 139 v~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~ 218 (323)
T KOG0322|consen 139 VQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCD 218 (323)
T ss_pred eEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhc
Confidence 22111 1234677776533 333 3333 43 999999999973 3334457999999999987655
Q ss_pred EEEEEEcCCCeEEEEEcCCC--ccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceeccc
Q 007234 213 YVLSSAVGERYIALWRTDGV--KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT 290 (612)
Q Consensus 213 ~l~s~s~~d~~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~ 290 (612)
.=+++| .+..+..|+++.. ... ......+.++.. ..+.+. ||++.+++++.||+|+||+.++.+.+.
T Consensus 219 rGisgg-a~dkl~~~Sl~~s~gslq-~~~e~~lknpGv--~gvrIR-----pD~KIlATAGWD~RiRVyswrtl~pLA-- 287 (323)
T KOG0322|consen 219 RGISGG-ADDKLVMYSLNHSTGSLQ-IRKEITLKNPGV--SGVRIR-----PDGKILATAGWDHRIRVYSWRTLNPLA-- 287 (323)
T ss_pred CCcCCC-ccccceeeeeccccCccc-ccceEEecCCCc--cceEEc-----cCCcEEeecccCCcEEEEEeccCCchh--
Confidence 556666 5667888988654 221 112233334332 333444 999999999999999999988776542
Q ss_pred CCceeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccc
Q 007234 291 KATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSL 370 (612)
Q Consensus 291 ~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~ 370 (612)
.+..|...|.+++||||..++ +.+|.
T Consensus 288 -----------------------------------------------------VLkyHsagvn~vAfspd~~lm-Aaask 313 (323)
T KOG0322|consen 288 -----------------------------------------------------VLKYHSAGVNAVAFSPDCELM-AAASK 313 (323)
T ss_pred -----------------------------------------------------hhhhhhcceeEEEeCCCCchh-hhccC
Confidence 345677789999999999998 99999
Q ss_pred eeeecceee
Q 007234 371 LKSKRGRYV 379 (612)
Q Consensus 371 d~~~~~w~~ 379 (612)
|..|.+|++
T Consensus 314 D~rISLWkL 322 (323)
T KOG0322|consen 314 DARISLWKL 322 (323)
T ss_pred CceEEeeec
Confidence 999999974
No 189
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.61 E-value=9.7e-14 Score=133.22 Aligned_cols=244 Identities=17% Similarity=0.187 Sum_probs=168.6
Q ss_pred CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECC--------C--------CcEEEEeeccCCccccccccccccccccc
Q 007234 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTL--------K--------GQVQTEFADIASTETTSLYGNRLEREHLS 65 (612)
Q Consensus 2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~--------~--------~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 65 (612)
|..+|+.+ .|+|+|+.||+|+.+|.|.+|-.. + -.....+.+|...+..++|+++
T Consensus 64 H~~aVN~v--Rf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d------- 134 (434)
T KOG1009|consen 64 HTRAVNVV--RFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPD------- 134 (434)
T ss_pred CcceeEEE--EEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCC-------
Confidence 45678656 999999999999999999999765 2 1122334444444444444444
Q ss_pred cceeEEEeeecccccccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEE
Q 007234 66 VDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEID 145 (612)
Q Consensus 66 ~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd 145 (612)
+.++++|+.|..+++||+..|+....+ .+|...|..++|.|-++++++-+.|...+.+.
T Consensus 135 --------------------~~~l~s~s~dns~~l~Dv~~G~l~~~~-~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~ 193 (434)
T KOG1009|consen 135 --------------------SNFLVSGSVDNSVRLWDVHAGQLLAIL-DDHEHYVQGVAWDPLNQYVASKSSDRHPEGFS 193 (434)
T ss_pred --------------------CceeeeeeccceEEEEEeccceeEeec-cccccccceeecchhhhhhhhhccCcccceee
Confidence 789999999999999999999998665 67999999999999999999999888777766
Q ss_pred CCCCceeEEEe---------------------cC--CCCeeEEEECCCCCEEEEeCC-----------eEEEEEcCC-Ce
Q 007234 146 PLTGSLLGKFR---------------------AS--TKGISCMAVSSDGKMLATAAG-----------QLKTFNCSD-HK 190 (612)
Q Consensus 146 ~~~~~~~~~~~---------------------~~--~~~v~~l~~spdg~~l~~~~g-----------~i~lwd~~~-~~ 190 (612)
+...+.+.... .. ......++|+|||.++++..| ..++|+-+. .+
T Consensus 194 ~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~r 273 (434)
T KOG1009|consen 194 AKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKR 273 (434)
T ss_pred eeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccC
Confidence 55433222211 10 123556899999999998762 234554332 24
Q ss_pred eEEEEecCCCCEEEEEEee------------------CCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEe
Q 007234 191 KMQKFSGHPGAVRFMTFSD------------------NGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDC 252 (612)
Q Consensus 191 ~~~~~~~h~~~v~~l~~sp------------------~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 252 (612)
+...+++...++..+.|+| -+-.++.++ ...|.+||.++..+. +... .-+-..++-
T Consensus 274 P~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt--~~svyvydtq~~~P~---~~v~-nihy~~iTD 347 (434)
T KOG1009|consen 274 PAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT--KNSVYVYDTQTLEPL---AVVD-NIHYSAITD 347 (434)
T ss_pred ceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEee--cceEEEeccccccce---EEEe-eeeeeeecc
Confidence 4566666666666666665 122334443 568999998887644 2221 223334455
Q ss_pred EEecCCccCCCCcEEEEEecCCcEEEEECCCcce
Q 007234 253 RCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE 286 (612)
Q Consensus 253 ~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~ 286 (612)
++|+ +||..++..|.||...+-.++..++
T Consensus 348 iaws-----~dg~~l~vSS~DGyCS~vtfe~~el 376 (434)
T KOG1009|consen 348 IAWS-----DDGSVLLVSSTDGFCSLVTFEPWEL 376 (434)
T ss_pred eeec-----CCCcEEEEeccCCceEEEEEcchhc
Confidence 5665 9999999999999888877766554
No 190
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.61 E-value=3.1e-15 Score=154.69 Aligned_cols=242 Identities=15% Similarity=0.166 Sum_probs=179.6
Q ss_pred CcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccc
Q 007234 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (612)
Q Consensus 3 s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (612)
..+| -|+.|...|.++++|+.|..++||..+++.+.....||.+.++..+.+..
T Consensus 190 ~naV--yca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~------------------------ 243 (1113)
T KOG0644|consen 190 RNAV--YCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSN------------------------ 243 (1113)
T ss_pred hhhe--eeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchh------------------------
Confidence 3466 46699999999999999999999999999999999999998887666655
Q ss_pred ccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCC-------------
Q 007234 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG------------- 149 (612)
Q Consensus 83 ~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~------------- 149 (612)
+.++++++.|.-|++|.+.++..+. ++.+|++.|++++|+|-. +.+.||++++||.+-.
T Consensus 244 ---n~~iaaaS~D~vIrvWrl~~~~pvs-vLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~ 315 (1113)
T KOG0644|consen 244 ---NTMIAAASNDKVIRVWRLPDGAPVS-VLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTE 315 (1113)
T ss_pred ---hhhhhhcccCceEEEEecCCCchHH-HHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCccc
Confidence 6788999999999999999999884 447899999999999953 7789999999998610
Q ss_pred -ceeEEEec----------------CCCCeeEEEECCCCCEEEEeC-------------CeEEEEEcCCCeeEEEEecCC
Q 007234 150 -SLLGKFRA----------------STKGISCMAVSSDGKMLATAA-------------GQLKTFNCSDHKKMQKFSGHP 199 (612)
Q Consensus 150 -~~~~~~~~----------------~~~~v~~l~~spdg~~l~~~~-------------g~i~lwd~~~~~~~~~~~~h~ 199 (612)
..+..+.. ....+.+++|...+-.+++.+ ..+++|++.+|.....+.+|.
T Consensus 316 ~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghs 395 (1113)
T KOG0644|consen 316 KDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHS 395 (1113)
T ss_pred ccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccc
Confidence 11111000 001122333333222233222 367899999999999999999
Q ss_pred CCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEE
Q 007234 200 GAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIW 279 (612)
Q Consensus 200 ~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iw 279 (612)
..+..+.++|-+..++-....||...|||+-.+.+. .++... +...++ ..|+ +||..++....-|.++|.
T Consensus 396 d~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pi---k~y~~g-h~kl~d-~kFS-----qdgts~~lsd~hgql~i~ 465 (1113)
T KOG0644|consen 396 DEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPI---KHYFIG-HGKLVD-GKFS-----QDGTSIALSDDHGQLYIL 465 (1113)
T ss_pred cceeeeeecCCCcHhhhhccCCCceEeeecccCCcc---eeeecc-cceeec-cccC-----CCCceEecCCCCCceEEe
Confidence 999999999977665544448999999999988755 233333 333333 3455 999999988888999999
Q ss_pred ECCCcceec
Q 007234 280 YGQNIEELR 288 (612)
Q Consensus 280 d~~~~~~~~ 288 (612)
....++...
T Consensus 466 g~gqs~s~k 474 (1113)
T KOG0644|consen 466 GTGQSKSQK 474 (1113)
T ss_pred ccCCCcccc
Confidence 765554443
No 191
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.60 E-value=6.7e-15 Score=147.81 Aligned_cols=181 Identities=13% Similarity=0.169 Sum_probs=138.2
Q ss_pred EEECCCcEEEEEcCCC-eE----EEEeccCCCCCeEEEEEec-CCCEEEEEecCCcEEEEECCCC-------ceeEEEec
Q 007234 91 LGTGGGDVLALAVSAG-QL----KWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTG-------SLLGKFRA 157 (612)
Q Consensus 91 ~gs~~g~I~vwd~~~~-~~----~~~~~~~h~~~V~~l~~sp-~~~~l~s~s~dg~v~iwd~~~~-------~~~~~~~~ 157 (612)
..+..|.|-||+++.. +. +..+. ....|+++.|.| |...|++++.||.|++|.+..+ .+...+..
T Consensus 598 L~g~gG~iai~el~~PGrLPDgv~p~l~--Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~ 675 (1012)
T KOG1445|consen 598 LAGSGGVIAIYELNEPGRLPDGVMPGLF--NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTI 675 (1012)
T ss_pred ecCCCceEEEEEcCCCCCCCcccccccc--cCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeec
Confidence 3556788999999753 22 22222 456799999999 7778999999999999998754 34566788
Q ss_pred CCCCeeEEEECCC-CCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCcc
Q 007234 158 STKGISCMAVSSD-GKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK 234 (612)
Q Consensus 158 ~~~~v~~l~~spd-g~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~ 234 (612)
|...|+++.|+|- ...|++++ .+|++||+++++....+.||.+.|.+++|||+|+.+++.| .||+|++|..++++.
T Consensus 676 h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVc-KDg~~rVy~Prs~e~ 754 (1012)
T KOG1445|consen 676 HGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVC-KDGTLRVYEPRSREQ 754 (1012)
T ss_pred ccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeee-cCceEEEeCCCCCCC
Confidence 9999999999993 45667766 7999999999999999999999999999999999999998 799999999988764
Q ss_pred ccceeeEeecCC--ceeEEeEEecCCccCCCCcEEEEEecCC----cEEEEECCCc
Q 007234 235 QSASCVLAMEHP--AVFMDCRCIDNGGVDDAGLYVLAISETG----VCYIWYGQNI 284 (612)
Q Consensus 235 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~t~s~dg----~i~iwd~~~~ 284 (612)
. ++....+ .....+.+. -||+++++.+.|. .|.+||.++.
T Consensus 755 p----v~Eg~gpvgtRgARi~wa------cdgr~viv~Gfdk~SeRQv~~Y~Aq~l 800 (1012)
T KOG1445|consen 755 P----VYEGKGPVGTRGARILWA------CDGRIVIVVGFDKSSERQVQMYDAQTL 800 (1012)
T ss_pred c----cccCCCCccCcceeEEEE------ecCcEEEEecccccchhhhhhhhhhhc
Confidence 3 2222221 112233333 4778888877654 6778876544
No 192
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.59 E-value=3.8e-13 Score=142.88 Aligned_cols=288 Identities=14% Similarity=0.156 Sum_probs=194.2
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEE
Q 007234 12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL 91 (612)
Q Consensus 12 ~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~ 91 (612)
.|+|-...++++...-+|+|||.+.+++...|..+... ...++.+....... ..++++
T Consensus 1071 ~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~---------------~t~Vs~l~liNe~D-------~aLlLt 1128 (1387)
T KOG1517|consen 1071 KFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFP---------------DTRVSDLELINEQD-------DALLLT 1128 (1387)
T ss_pred eecCCCceeEEcCCcceEEEEecccCceeccccCCCCC---------------CCccceeeeecccc-------hhheee
Confidence 89998888998886678999999999998877543311 12334444433221 578999
Q ss_pred EECCCcEEEEEcCCC-----eEEEEe------ccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCC-
Q 007234 92 GTGGGDVLALAVSAG-----QLKWRL------SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST- 159 (612)
Q Consensus 92 gs~~g~I~vwd~~~~-----~~~~~~------~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~- 159 (612)
|+.||.|+||+--.. +.+... ..+-.+.=.-+.|.....+|+++|.-..|++||....+.+..+....
T Consensus 1129 as~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~ 1208 (1387)
T KOG1517|consen 1129 ASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSS 1208 (1387)
T ss_pred eccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCC
Confidence 999999999975322 222111 01111111345677766778887778899999998887777765433
Q ss_pred CCeeEEEECC-CCCEEEEeC--CeEEEEEcCCCe---eEEEEecCCCC--EEEEEEeeCCcE-EEEEEcCCCeEEEEEcC
Q 007234 160 KGISCMAVSS-DGKMLATAA--GQLKTFNCSDHK---KMQKFSGHPGA--VRFMTFSDNGKY-VLSSAVGERYIALWRTD 230 (612)
Q Consensus 160 ~~v~~l~~sp-dg~~l~~~~--g~i~lwd~~~~~---~~~~~~~h~~~--v~~l~~sp~~~~-l~s~s~~d~~i~vwd~~ 230 (612)
..++++.-+- .|+.+++|. |.|++||.+... .+...+.|+.. |..+.+.+.|-- +++++ .||.|++||++
T Consensus 1209 t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs-~~G~I~~~DlR 1287 (1387)
T KOG1517|consen 1209 TLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGS-QDGDIQLLDLR 1287 (1387)
T ss_pred ccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeec-cCCeEEEEecc
Confidence 3677776543 468888886 999999988653 46677788877 999999887654 88887 79999999999
Q ss_pred CCccccceeeEee-cCC--ceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCC
Q 007234 231 GVKKQSASCVLAM-EHP--AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQ 307 (612)
Q Consensus 231 ~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~ 307 (612)
...... .... .+. +..++++... +....+++|+. +.|+||++. |+++..++.. ..|..
T Consensus 1288 ~~~~e~---~~~iv~~~~yGs~lTal~VH-----~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n-------~~F~~-- 1348 (1387)
T KOG1517|consen 1288 MSSKET---FLTIVAHWEYGSALTALTVH-----EHAPIIASGSA-QLIKIYSLS-GEQLNIIKYN-------PGFMG-- 1348 (1387)
T ss_pred cCcccc---cceeeeccccCccceeeeec-----cCCCeeeecCc-ceEEEEecC-hhhhcccccC-------ccccc--
Confidence 853221 1111 122 2235555554 77788999988 999999974 3443322211 00000
Q ss_pred cccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceeeec
Q 007234 308 KSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN 381 (612)
Q Consensus 308 ~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~~~ 381 (612)
.....+.|++|.|--.+| +.|++|..+.++...+
T Consensus 1349 ---------------------------------------q~~gs~scL~FHP~~~ll-AaG~~Ds~V~iYs~~k 1382 (1387)
T KOG1517|consen 1349 ---------------------------------------QRIGSVSCLAFHPHRLLL-AAGSADSTVSIYSCEK 1382 (1387)
T ss_pred ---------------------------------------CcCCCcceeeecchhHhh-hhccCCceEEEeecCC
Confidence 112245889999998888 8999999999987643
No 193
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=4.8e-13 Score=120.03 Aligned_cols=204 Identities=17% Similarity=0.254 Sum_probs=139.7
Q ss_pred CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccc-cceeEEEeeeccccc
Q 007234 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLS-VDYTCMKWLSVDRKK 80 (612)
Q Consensus 2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~-~~~~~~~w~~~~~~~ 80 (612)
+.+||+.+ +|. ..+|.+|+ ||.|+=|.++....-...+..- ..-++...+... ..+.. .|..+.
T Consensus 61 hdgpiy~~--~f~--d~~Lls~g-dG~V~gw~W~E~~es~~~K~lw------e~~~P~~~~~~evPeINa-m~ldP~--- 125 (325)
T KOG0649|consen 61 HDGPIYYL--AFH--DDFLLSGG-DGLVYGWEWNEEEESLATKRLW------EVKIPMQVDAVEVPEINA-MWLDPS--- 125 (325)
T ss_pred cCCCeeee--eee--hhheeecc-CceEEEeeehhhhhhccchhhh------hhcCccccCcccCCccce-eEeccC---
Confidence 56788777 887 44666665 6999999886443211110000 000000001111 11222 233322
Q ss_pred ccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCC-
Q 007234 81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST- 159 (612)
Q Consensus 81 ~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~- 159 (612)
.+-++.++.|+.++-||+++|+....+ .+|++.|.++.-......+++|+.||++++||++++++++.+....
T Consensus 126 -----enSi~~AgGD~~~y~~dlE~G~i~r~~-rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~ 199 (325)
T KOG0649|consen 126 -----ENSILFAGGDGVIYQVDLEDGRIQREY-RGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKN 199 (325)
T ss_pred -----CCcEEEecCCeEEEEEEecCCEEEEEE-cCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccC
Confidence 344566669999999999999998776 7999999999985555679999999999999999999988875422
Q ss_pred ---------CCeeEEEECCCCCEEEEeC-CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEc
Q 007234 160 ---------KGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRT 229 (612)
Q Consensus 160 ---------~~v~~l~~spdg~~l~~~~-g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~ 229 (612)
..|.+++. +..+|++|+ -.+.+|+++..++...|+ -..++..+.|..| .++++| ..+.|.-|.+
T Consensus 200 ~~~lRp~~g~wigala~--~edWlvCGgGp~lslwhLrsse~t~vfp-ipa~v~~v~F~~d--~vl~~G-~g~~v~~~~l 273 (325)
T KOG0649|consen 200 PNLLRPDWGKWIGALAV--NEDWLVCGGGPKLSLWHLRSSESTCVFP-IPARVHLVDFVDD--CVLIGG-EGNHVQSYTL 273 (325)
T ss_pred hhhcCcccCceeEEEec--cCceEEecCCCceeEEeccCCCceEEEe-cccceeEeeeecc--eEEEec-cccceeeeee
Confidence 23555555 466999998 589999999999888886 5667888888754 567776 5778999987
Q ss_pred CCC
Q 007234 230 DGV 232 (612)
Q Consensus 230 ~~~ 232 (612)
...
T Consensus 274 ~Gv 276 (325)
T KOG0649|consen 274 NGV 276 (325)
T ss_pred ccE
Confidence 653
No 194
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.58 E-value=6e-15 Score=143.53 Aligned_cols=225 Identities=15% Similarity=0.201 Sum_probs=175.4
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEE
Q 007234 10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (612)
Q Consensus 10 ~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (612)
.+.|+.+|++|+.|+.-|.|-.+|+.++++..++.. ...|.++.|-+. .. +
T Consensus 134 ~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHn---------------------------eq-~ 184 (545)
T KOG1272|consen 134 HLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHN---------------------------EQ-F 184 (545)
T ss_pred eeeecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcc---------------------------hH-H
Confidence 348999999999999999999999999999888752 222333333322 23 3
Q ss_pred EEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEEEECC
Q 007234 90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSS 169 (612)
Q Consensus 90 ~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~sp 169 (612)
+.......++|||-. |..+..+ . ....|..+.|-|..-+|++++..|.++.-|+.+|+.+..+....+.+..++-+|
T Consensus 185 ~AVAQK~y~yvYD~~-GtElHCl-k-~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP 261 (545)
T KOG1272|consen 185 FAVAQKKYVYVYDNN-GTELHCL-K-RHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNP 261 (545)
T ss_pred HHhhhhceEEEecCC-CcEEeeh-h-hcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCC
Confidence 444455678899855 4444444 3 236799999999888899999999999999999999999998888999999999
Q ss_pred CCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCc
Q 007234 170 DGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPA 247 (612)
Q Consensus 170 dg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 247 (612)
-+-.+-+|. |+|.+|.....+++.++-.|.++|.++++.++|+|++++| .|+.++|||++.-... ......++.
T Consensus 262 ~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG-~Dr~~kIWDlR~~~ql---~t~~tp~~a 337 (545)
T KOG1272|consen 262 YNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTG-LDRKVKIWDLRNFYQL---HTYRTPHPA 337 (545)
T ss_pred ccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecc-cccceeEeeecccccc---ceeecCCCc
Confidence 988888887 9999999999999988899999999999999999999998 6999999999987644 112223333
Q ss_pred eeEEeEEecCCccCCCCcEEEEEecCCcEEEEE
Q 007234 248 VFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY 280 (612)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd 280 (612)
..+.++ . +-+++.+....+.+|.
T Consensus 338 ---~~ls~S-----q--kglLA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 338 ---SNLSLS-----Q--KGLLALSYGDHVQIWK 360 (545)
T ss_pred ---cccccc-----c--ccceeeecCCeeeeeh
Confidence 334454 3 3345556666899995
No 195
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.55 E-value=7.9e-14 Score=138.15 Aligned_cols=171 Identities=21% Similarity=0.370 Sum_probs=131.6
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEEC
Q 007234 15 PALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG 94 (612)
Q Consensus 15 pdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~ 94 (612)
|.|--+..|-..|.|.+.|....+..+-|. .. .......++|+.|.+.+ ...++++-.
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sklfn------------e~--r~i~ktsvT~ikWvpg~--------~~~Fl~a~~ 240 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFN------------EE--RLINKSSVTCIKWVPGS--------DSLFLVAHA 240 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHHhhh------------hc--ccccccceEEEEEEeCC--------CceEEEEEe
Confidence 344456666667777777765422221111 11 11224578999999987 678889999
Q ss_pred CCcEEEEEcCC--------------CeEEE--------------EeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEEC
Q 007234 95 GGDVLALAVSA--------------GQLKW--------------RLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDP 146 (612)
Q Consensus 95 ~g~I~vwd~~~--------------~~~~~--------------~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~ 146 (612)
+|.+++||..- +.... .. .--.+.|..++|+|||++|++.|.||.+++||+
T Consensus 241 sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w-~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~f 319 (636)
T KOG2394|consen 241 SGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARW-HIGEGSINEFAFSPDGKYLATVSQDGFLRIFDF 319 (636)
T ss_pred cCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCcccee-EeccccccceeEcCCCceEEEEecCceEEEeec
Confidence 99999997531 11100 00 012347889999999999999999999999999
Q ss_pred CCCceeEEEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEe
Q 007234 147 LTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFS 208 (612)
Q Consensus 147 ~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~s 208 (612)
.+.+++..++.--+...|++|+|||+++++|+ ..|.||.+..++.+..-.||.+.|+.++|.
T Consensus 320 dt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 320 DTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFD 383 (636)
T ss_pred cHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeec
Confidence 99988888887778999999999999999999 799999999999999999999999999998
No 196
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.55 E-value=6.2e-12 Score=117.46 Aligned_cols=236 Identities=16% Similarity=0.207 Sum_probs=163.4
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCc
Q 007234 8 DILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (612)
Q Consensus 8 ~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (612)
.+.++|+.|..-++.|..+| .+||+++--+....-+.+.++ .....+.+- .+
T Consensus 8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G----------------~~~veMLfR-----------~N 59 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGG----------------FKIVEMLFR-----------SN 59 (346)
T ss_pred eeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCc----------------hhhhhHhhh-----------hc
Confidence 35679999999999998776 699998753322111111110 001111110 23
Q ss_pred EEEE-EECC------CcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECC-CCceeEEEecCC
Q 007234 88 LLVL-GTGG------GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL-TGSLLGKFRAST 159 (612)
Q Consensus 88 ~l~~-gs~~------g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~-~~~~~~~~~~~~ 159 (612)
+++. |+.+ .+|.|||=....++.++. ...+|.++.+.++ .+++. ..+.|++|... ..+.++.+....
T Consensus 60 ~laLVGGg~~pky~pNkviIWDD~k~~~i~el~--f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~ 134 (346)
T KOG2111|consen 60 YLALVGGGSRPKYPPNKVIIWDDLKERCIIELS--FNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRS 134 (346)
T ss_pred eEEEecCCCCCCCCCceEEEEecccCcEEEEEE--eccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeeccc
Confidence 4443 4333 249999976677766653 6789999999875 45555 57889999987 456666655432
Q ss_pred --CCeeEEEECCCCCEEEEeC---CeEEEEEcCCCee--EEEEecCCCCEEEEEEeeCCcEEEEEEcCCC-eEEEEEcCC
Q 007234 160 --KGISCMAVSSDGKMLATAA---GQLKTFNCSDHKK--MQKFSGHPGAVRFMTFSDNGKYVLSSAVGER-YIALWRTDG 231 (612)
Q Consensus 160 --~~v~~l~~spdg~~l~~~~---g~i~lwd~~~~~~--~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~-~i~vwd~~~ 231 (612)
.++.+++-+.+..+||.-+ |.|+|-|+...+. -..+..|.+.|.+++.+-+|..+++++ ..| -|+|||..+
T Consensus 135 NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaS-tkGTLIRIFdt~~ 213 (346)
T KOG2111|consen 135 NPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATAS-TKGTLIRIFDTED 213 (346)
T ss_pred CCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEec-cCcEEEEEEEcCC
Confidence 3444444444455566555 8999999987655 467789999999999999999999998 455 589999999
Q ss_pred CccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcc
Q 007234 232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE 285 (612)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~ 285 (612)
+.+. ..+.-+.....+.++.|+ |++.+|+++|..|+++||.++...
T Consensus 214 g~~l---~E~RRG~d~A~iy~iaFS-----p~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 214 GTLL---QELRRGVDRADIYCIAFS-----PNSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred CcEe---eeeecCCchheEEEEEeC-----CCccEEEEEcCCCeEEEEEeecCC
Confidence 9866 334444455566778887 999999999999999999986543
No 197
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=7.4e-13 Score=139.44 Aligned_cols=215 Identities=14% Similarity=0.130 Sum_probs=140.0
Q ss_pred CCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEECC---CcEEEEE
Q 007234 26 DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGG---GDVLALA 102 (612)
Q Consensus 26 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~---g~I~vwd 102 (612)
+..|.+||..... .+.+..+...+....|+++ ++.++.++.+ ..|++||
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPD---------------------------G~~la~~s~~~~~~~i~i~d 234 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPD---------------------------GSKLAYVSFENKKSQLVVHD 234 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCC---------------------------CCEEEEEEecCCCcEEEEEe
Confidence 4689999986554 4555555555666666665 6777776543 3599999
Q ss_pred cCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEe-cCCcEEE--EECCCCceeEEEecCCCCeeEEEECCCCCEEEEeC-
Q 007234 103 VSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG-ADGMVCE--IDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA- 178 (612)
Q Consensus 103 ~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s-~dg~v~i--wd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~- 178 (612)
+.+++..... ...+....++|+|||+.|+.++ .+|.+.+ ||+.+++. ..+..+...+.+..|+|||+.|+.++
T Consensus 235 l~tg~~~~l~--~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~ 311 (429)
T PRK01742 235 LRSGARKVVA--SFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSD 311 (429)
T ss_pred CCCCceEEEe--cCCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEEC
Confidence 9988643211 1222344789999999888764 6776555 46666554 44555666788999999999877654
Q ss_pred --CeEEEEEcC--CCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEE
Q 007234 179 --GQLKTFNCS--DHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRC 254 (612)
Q Consensus 179 --g~i~lwd~~--~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (612)
|...+|++. ++. ...+ ++.. ....|+|||++++.++ .++ +.+||+.++... . ...... .....
T Consensus 312 ~~g~~~I~~~~~~~~~-~~~l-~~~~--~~~~~SpDG~~ia~~~-~~~-i~~~Dl~~g~~~---~-lt~~~~---~~~~~ 378 (429)
T PRK01742 312 RSGSPQVYRMSASGGG-ASLV-GGRG--YSAQISADGKTLVMIN-GDN-VVKQDLTSGSTE---V-LSSTFL---DESPS 378 (429)
T ss_pred CCCCceEEEEECCCCC-eEEe-cCCC--CCccCCCCCCEEEEEc-CCC-EEEEECCCCCeE---E-ecCCCC---CCCce
Confidence 667777654 332 2233 3443 4578999999998876 455 566999887533 1 111111 12344
Q ss_pred ecCCccCCCCcEEEEEecCCcEEEEECC--Ccceecc
Q 007234 255 IDNGGVDDAGLYVLAISETGVCYIWYGQ--NIEELRN 289 (612)
Q Consensus 255 ~~~~~~~~~~~~l~t~s~dg~i~iwd~~--~~~~~~~ 289 (612)
|+ |||++|+.++.+|.+.+|++. +|...+.
T Consensus 379 ~s-----PdG~~i~~~s~~g~~~~l~~~~~~G~~~~~ 410 (429)
T PRK01742 379 IS-----PNGIMIIYSSTQGLGKVLQLVSADGRFKAR 410 (429)
T ss_pred EC-----CCCCEEEEEEcCCCceEEEEEECCCCceEE
Confidence 55 999999999999988888752 3444433
No 198
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.54 E-value=1.7e-13 Score=124.33 Aligned_cols=143 Identities=22% Similarity=0.359 Sum_probs=118.1
Q ss_pred CcEEEEEECCCcEEEEEcCCCeEEEEec---------cCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCC--c--ee
Q 007234 86 SSLLVLGTGGGDVLALAVSAGQLKWRLS---------DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG--S--LL 152 (612)
Q Consensus 86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~---------~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~--~--~~ 152 (612)
.-++++|..+|.|.+||+.++..+..+. ..|..+|.++.|.+....=++|+.+..+..|.+... . ..
T Consensus 165 ~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~ 244 (323)
T KOG0322|consen 165 TFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIR 244 (323)
T ss_pred eEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCccccc
Confidence 3467788899999999999984433321 368999999999886666788888888999987643 2 12
Q ss_pred EEEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEc
Q 007234 153 GKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRT 229 (612)
Q Consensus 153 ~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~ 229 (612)
..+.-..-++..+...||++++|+++ |.|++|+.++.+++..+.-|...|++++|+|+...+++++ .|+.|.+|++
T Consensus 245 ~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaas-kD~rISLWkL 322 (323)
T KOG0322|consen 245 KEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAAS-KDARISLWKL 322 (323)
T ss_pred ceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhcc-CCceEEeeec
Confidence 22333345789999999999999999 9999999999999999999999999999999988888887 8999999986
No 199
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.54 E-value=8.9e-14 Score=134.46 Aligned_cols=199 Identities=15% Similarity=0.106 Sum_probs=147.7
Q ss_pred EEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEEEECCCCCEEEEeC-CeEEEEEcCCCeeEEEEec--
Q 007234 121 SAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSG-- 197 (612)
Q Consensus 121 ~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~-g~i~lwd~~~~~~~~~~~~-- 197 (612)
..++|+++|..+++++.||++|+|+..+...+.....|...|.++.|+|||+.|++-+ ...+||+++++..+.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d~~~VW~~~~g~~~a~~t~~~ 227 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGADSARVWSVNTGAALARKTPFS 227 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCCceEEEEeccCchhhhcCCcc
Confidence 6789999999999999999999999888887778888999999999999999999888 7999999999977666542
Q ss_pred CCCCEEEEEEeeCC---c-EEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecC
Q 007234 198 HPGAVRFMTFSDNG---K-YVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET 273 (612)
Q Consensus 198 h~~~v~~l~~sp~~---~-~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~d 273 (612)
.......+.|+.|+ . ++++.-..-+.|+.|++...+..........-.....+++...+ ++|++++.|+.|
T Consensus 228 k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS-----~dGkf~AlGT~d 302 (398)
T KOG0771|consen 228 KDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVS-----DDGKFLALGTMD 302 (398)
T ss_pred cchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEc-----CCCcEEEEeccC
Confidence 22345677888776 3 23333334556777776554331000111111223345666676 999999999999
Q ss_pred CcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeE
Q 007234 274 GVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDI 353 (612)
Q Consensus 274 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~ 353 (612)
|.|-+++..+.+.+.. . -..|...|+
T Consensus 303 GsVai~~~~~lq~~~~--------------v----------------------------------------k~aH~~~VT 328 (398)
T KOG0771|consen 303 GSVAIYDAKSLQRLQY--------------V----------------------------------------KEAHLGFVT 328 (398)
T ss_pred CcEEEEEeceeeeeEe--------------e----------------------------------------hhhheeeee
Confidence 9999999766554321 1 124677899
Q ss_pred EEEecCCCceEeccccceeeecceee
Q 007234 354 NLNCSQDGVLLPMSQSLLKSKRGRYV 379 (612)
Q Consensus 354 ~l~~S~dg~~l~~s~s~d~~~~~w~~ 379 (612)
.+.|+||.+++ ++-|.|....+..+
T Consensus 329 ~ltF~Pdsr~~-~svSs~~~~~v~~l 353 (398)
T KOG0771|consen 329 GLTFSPDSRYL-ASVSSDNEAAVTKL 353 (398)
T ss_pred eEEEcCCcCcc-cccccCCceeEEEE
Confidence 99999999999 88888888877765
No 200
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=4.4e-13 Score=141.16 Aligned_cols=189 Identities=14% Similarity=0.133 Sum_probs=126.0
Q ss_pred cccceeEEEEcCCCCEEEEEeCC---CcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccc
Q 007234 4 SNIRDILTSFSPALDYFAICSGD---ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (612)
Q Consensus 4 ~~V~~l~~~fspdg~~las~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~ 80 (612)
.++.. .+|||||++||.++.+ ..|.+||+.+++.... ....+... ...|.|.
T Consensus 204 ~~v~~--p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l-~~~~g~~~------------------~~~wSPD---- 258 (429)
T PRK01742 204 QPLMS--PAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVV-ASFRGHNG------------------APAFSPD---- 258 (429)
T ss_pred Ccccc--ceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEE-ecCCCccC------------------ceeECCC----
Confidence 34644 4999999999988753 3699999988864322 11111111 2345443
Q ss_pred ccccCCcEEEEE-ECCCcE--EEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEe-cCCcEEEEECCCC-ceeEEE
Q 007234 81 KRKLGSSLLVLG-TGGGDV--LALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPLTG-SLLGKF 155 (612)
Q Consensus 81 ~~~~~~~~l~~g-s~~g~I--~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s-~dg~v~iwd~~~~-~~~~~~ 155 (612)
++.|+.+ +.+|.+ ++||+.++... .+ ..+...+.+..|+|||+.|+.++ .+|...+|++... .....+
T Consensus 259 -----G~~La~~~~~~g~~~Iy~~d~~~~~~~-~l-t~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l 331 (429)
T PRK01742 259 -----GSRLAFASSKDGVLNIYVMGANGGTPS-QL-TSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV 331 (429)
T ss_pred -----CCEEEEEEecCCcEEEEEEECCCCCeE-ee-ccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe
Confidence 6666665 467765 45577666653 34 34667788999999999876555 5788888876432 222223
Q ss_pred ecCCCCeeEEEECCCCCEEEEeC-CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcC
Q 007234 156 RASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD 230 (612)
Q Consensus 156 ~~~~~~v~~l~~spdg~~l~~~~-g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~ 230 (612)
.+.. .+..|+|||++++.++ ..+.+||+.+++.......+ ....+.|+|+|+++++++ .++.+.+|.+.
T Consensus 332 -~~~~--~~~~~SpDG~~ia~~~~~~i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s-~~g~~~~l~~~ 401 (429)
T PRK01742 332 -GGRG--YSAQISADGKTLVMINGDNVVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSS-TQGLGKVLQLV 401 (429)
T ss_pred -cCCC--CCccCCCCCCEEEEEcCCCEEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEE-cCCCceEEEEE
Confidence 3333 4678999999998877 67778999988754322222 335678999999999987 58878888764
No 201
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.52 E-value=2.8e-12 Score=121.47 Aligned_cols=196 Identities=19% Similarity=0.303 Sum_probs=143.6
Q ss_pred cccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccc
Q 007234 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (612)
Q Consensus 4 ~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (612)
..++.+ +|++.-.-+|++..|..|++||-.+ ++...++ .......+|++|-|-.
T Consensus 99 ~dlr~~--aWhqH~~~fava~nddvVriy~kss-t~pt~Lk-----------------s~sQrnvtclawRPls------ 152 (445)
T KOG2139|consen 99 IDLRGV--AWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLK-----------------SVSQRNVTCLAWRPLS------ 152 (445)
T ss_pred cceeeE--eechhhhhhhhhccCcEEEEeccCC-CCCceec-----------------chhhcceeEEEeccCC------
Confidence 456666 9999877889999999999999766 4444443 2335688999998876
Q ss_pred cCCcEEEEEECCCcEEEEEcCCC----eEE--------EEec-cCCCCCeEEEEEecCCCEEEEEec-CCcEEEEECCCC
Q 007234 84 LGSSLLVLGTGGGDVLALAVSAG----QLK--------WRLS-DCHPGGVSAISFATHGSCIYSAGA-DGMVCEIDPLTG 149 (612)
Q Consensus 84 ~~~~~l~~gs~~g~I~vwd~~~~----~~~--------~~~~-~~h~~~V~~l~~sp~~~~l~s~s~-dg~v~iwd~~~~ 149 (612)
...+++|+..| |.+|..... ..+ ..+. .+| .+|+++.|++||..+++++. |..|.+||..++
T Consensus 153 --aselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg 228 (445)
T KOG2139|consen 153 --ASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTG 228 (445)
T ss_pred --cceeeeeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCC
Confidence 56788887766 778876431 110 0111 344 68999999999999999985 668999999998
Q ss_pred ceeEEEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEE
Q 007234 150 SLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALW 227 (612)
Q Consensus 150 ~~~~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vw 227 (612)
..+.......+.++-+.|||||.+++++. +..++|+...........--.+.|...+|+|+|++|+.+++ +.-.+|
T Consensus 229 ~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s--gsp~ly 306 (445)
T KOG2139|consen 229 QKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS--GSPRLY 306 (445)
T ss_pred CcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc--CCceEE
Confidence 87666544567889999999999999887 89999965443222222334558999999999998888764 444566
Q ss_pred EcCC
Q 007234 228 RTDG 231 (612)
Q Consensus 228 d~~~ 231 (612)
.+..
T Consensus 307 sl~f 310 (445)
T KOG2139|consen 307 SLTF 310 (445)
T ss_pred EEee
Confidence 6543
No 202
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.52 E-value=1.2e-12 Score=129.91 Aligned_cols=196 Identities=17% Similarity=0.241 Sum_probs=144.0
Q ss_pred CcEEEEEECCCcEEEEEcCCCeEEEEec---cCCCCCeEEEEEecCC-CEEEEEecCCcEEEEECCC-------------
Q 007234 86 SSLLVLGTGGGDVLALAVSAGQLKWRLS---DCHPGGVSAISFATHG-SCIYSAGADGMVCEIDPLT------------- 148 (612)
Q Consensus 86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~---~~h~~~V~~l~~sp~~-~~l~s~s~dg~v~iwd~~~------------- 148 (612)
+--+++|-..|.|.+.|+...+....+. .-....|+++.|-|.+ ..++.+-.+|.++++|..-
T Consensus 185 g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k 264 (636)
T KOG2394|consen 185 GLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALK 264 (636)
T ss_pred CcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccC
Confidence 6678999999999999987633221110 1124689999999954 4566677899999997531
Q ss_pred -Cc--------------eeEEEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCC
Q 007234 149 -GS--------------LLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNG 211 (612)
Q Consensus 149 -~~--------------~~~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~ 211 (612)
+. ++..+....+.|...+|+|||++||+.+ |.++|||..+.+++..++.--+...|++|||||
T Consensus 265 ~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDG 344 (636)
T KOG2394|consen 265 DGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDG 344 (636)
T ss_pred CCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCc
Confidence 11 1222223345788999999999999998 999999999998887777777889999999999
Q ss_pred cEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCC------------------------------ccC
Q 007234 212 KYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNG------------------------------GVD 261 (612)
Q Consensus 212 ~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------~~~ 261 (612)
+|++++| +|.-|.||.+...+ .+.....+...++.++|.+- ..+
T Consensus 345 KyIvtGG-EDDLVtVwSf~erR-----VVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S 418 (636)
T KOG2394|consen 345 KYIVTGG-EDDLVTVWSFEERR-----VVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGS 418 (636)
T ss_pred cEEEecC-CcceEEEEEeccce-----EEEeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCC
Confidence 9999998 79999999998876 33444556666677777610 001
Q ss_pred C-------------CCcEEEEEecCCcEEEEECCCccee
Q 007234 262 D-------------AGLYVLAISETGVCYIWYGQNIEEL 287 (612)
Q Consensus 262 ~-------------~~~~l~t~s~dg~i~iwd~~~~~~~ 287 (612)
. ....|.+.+.|-.+.+||+......
T Consensus 419 ~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L~ 457 (636)
T KOG2394|consen 419 AEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVLV 457 (636)
T ss_pred cCCCcccccccccceEEEeecccccceEEEEecchhhcc
Confidence 1 1246788899999999998765443
No 203
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.51 E-value=1.8e-13 Score=135.37 Aligned_cols=178 Identities=20% Similarity=0.268 Sum_probs=133.6
Q ss_pred CcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccc
Q 007234 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (612)
Q Consensus 3 s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (612)
-++| +|-.|+|||.-|++++.||.|++|.- +|-+..++. .....+.|..|.|.+.
T Consensus 104 ~~A~--~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~------------------Q~~~~v~c~~W~p~S~---- 158 (737)
T KOG1524|consen 104 AAAI--SSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVV------------------QNEESIRCARWAPNSN---- 158 (737)
T ss_pred hhhh--hhcccCCCCceeeeecCCceEEEEec-cchHHHHHh------------------hcCceeEEEEECCCCC----
Confidence 4556 66799999999999999999999984 454433321 1234566888888753
Q ss_pred ccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCe
Q 007234 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI 162 (612)
Q Consensus 83 ~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v 162 (612)
+ ++-+..|.+.|=.+..+..+-+. .+|.+-|.++.|++.++.+++|+.|...++||- -|+.+.+-..|+.+|
T Consensus 159 ----~--vl~c~g~h~~IKpL~~n~k~i~W-kAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~-~G~~Lf~S~~~ey~I 230 (737)
T KOG1524|consen 159 ----S--IVFCQGGHISIKPLAANSKIIRW-RAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA-QGANLFTSAAEEYAI 230 (737)
T ss_pred ----c--eEEecCCeEEEeecccccceeEE-eccCcEEEEeecCccccceeecCCceeEEeecc-cCcccccCChhccce
Confidence 2 33344556666555555444344 579999999999999999999999999999995 577777777889999
Q ss_pred eEEEECCCCCEEEEeC-CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEE
Q 007234 163 SCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIAL 226 (612)
Q Consensus 163 ~~l~~spdg~~l~~~~-g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~v 226 (612)
++++|.|| +.++.++ +++++= ....+.|..++||+||..++.++ ..|.+.+
T Consensus 231 TSva~npd-~~~~v~S~nt~R~~-----------~p~~GSifnlsWS~DGTQ~a~gt-~~G~v~~ 282 (737)
T KOG1524|consen 231 TSVAFNPE-KDYLLWSYNTARFS-----------SPRVGSIFNLSWSADGTQATCGT-STGQLIV 282 (737)
T ss_pred eeeeeccc-cceeeeeeeeeeec-----------CCCccceEEEEEcCCCceeeccc-cCceEEE
Confidence 99999999 7777777 676621 23457789999999999988876 4665543
No 204
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.51 E-value=3.4e-12 Score=133.83 Aligned_cols=244 Identities=18% Similarity=0.212 Sum_probs=168.0
Q ss_pred ccceeEEEeeecccccccccCCcEEEEEECCCcEEEEEcCCCeE-----EEEeccCCCCCeEEEEEecCCCE--EEEEec
Q 007234 65 SVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQL-----KWRLSDCHPGGVSAISFATHGSC--IYSAGA 137 (612)
Q Consensus 65 ~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~-----~~~~~~~h~~~V~~l~~sp~~~~--l~s~s~ 137 (612)
...++|+.+.+.+ ..+++.|+.+|.|.+||++.+.. +......|..+|+.+.|..+..- |+++|.
T Consensus 242 ~s~v~~~~f~p~~--------p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ss 313 (555)
T KOG1587|consen 242 PSEVTCLKFCPFD--------PNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSS 313 (555)
T ss_pred CCceeEEEeccCC--------cceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEec
Confidence 3467788888887 77899999999999999987765 22333579999999999765444 999999
Q ss_pred CCcEEEEECCCCce------eEEEe------cCCCCeeEEEECCC-CCEEEEeC--CeEEEEE---cCCC-----eeEEE
Q 007234 138 DGMVCEIDPLTGSL------LGKFR------ASTKGISCMAVSSD-GKMLATAA--GQLKTFN---CSDH-----KKMQK 194 (612)
Q Consensus 138 dg~v~iwd~~~~~~------~~~~~------~~~~~v~~l~~spd-g~~l~~~~--g~i~lwd---~~~~-----~~~~~ 194 (612)
||.|..|+++.-.. ..... .....+++++|.|. -..+++|+ |.|+--+ .+.. +....
T Consensus 314 DG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~ 393 (555)
T KOG1587|consen 314 DGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHST 393 (555)
T ss_pred CCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccccccccccc
Confidence 99999998764322 11111 11237889999884 34566666 8776633 2222 12345
Q ss_pred EecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCC-CcEEEEEecC
Q 007234 195 FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDA-GLYVLAISET 273 (612)
Q Consensus 195 ~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~t~s~d 273 (612)
+..|.++|+.+.++|-+..++.++ .|-++++|.-..... +++........+..++|+ |. ...|+++..|
T Consensus 394 ~~~h~g~v~~v~~nPF~~k~fls~-gDW~vriWs~~~~~~----Pl~~~~~~~~~v~~vaWS-----ptrpavF~~~d~~ 463 (555)
T KOG1587|consen 394 FITHIGPVYAVSRNPFYPKNFLSV-GDWTVRIWSEDVIAS----PLLSLDSSPDYVTDVAWS-----PTRPAVFATVDGD 463 (555)
T ss_pred ccccCcceEeeecCCCccceeeee-ccceeEeccccCCCC----cchhhhhccceeeeeEEc-----CcCceEEEEEcCC
Confidence 567889999999999887666666 489999999773221 234444455546677787 44 3567778889
Q ss_pred CcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeE
Q 007234 274 GVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDI 353 (612)
Q Consensus 274 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~ 353 (612)
|.|.+||+.....-. ..+ ...+.....
T Consensus 464 G~l~iWDLl~~~~~P-----------------v~s------------------------------------~~~~~~~l~ 490 (555)
T KOG1587|consen 464 GNLDIWDLLQDDEEP-----------------VLS------------------------------------QKVCSPALT 490 (555)
T ss_pred CceehhhhhccccCC-----------------ccc------------------------------------ccccccccc
Confidence 999999975432210 000 000111344
Q ss_pred EEEecCCCceEeccccceeeecceeee
Q 007234 354 NLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (612)
Q Consensus 354 ~l~~S~dg~~l~~s~s~d~~~~~w~~~ 380 (612)
.+.|+++|++| +.|...|++.++++.
T Consensus 491 ~~~~s~~g~~l-avGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 491 RVRWSPNGKLL-AVGDANGTTHILKLS 516 (555)
T ss_pred eeecCCCCcEE-EEecCCCcEEEEEcC
Confidence 56688999999 999999999999884
No 205
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.51 E-value=8.7e-12 Score=127.20 Aligned_cols=316 Identities=14% Similarity=0.135 Sum_probs=179.9
Q ss_pred CEEE-EEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEECCC
Q 007234 18 DYFA-ICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGG 96 (612)
Q Consensus 18 ~~la-s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g 96 (612)
++++ +-..+|.|.|.|..+.+.+.++...........|+++ ++++++++.||
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~D---------------------------gr~~yv~~rdg 58 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPD---------------------------GRYLYVANRDG 58 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT----------------------------SSEEEEEETTS
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCC---------------------------CCEEEEEcCCC
Confidence 4454 4456899999999999999998754333233344444 78899999999
Q ss_pred cEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEe-cCCcEEEEECCCCceeEEEecC-------CCCeeEEEEC
Q 007234 97 DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPLTGSLLGKFRAS-------TKGISCMAVS 168 (612)
Q Consensus 97 ~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s-~dg~v~iwd~~~~~~~~~~~~~-------~~~v~~l~~s 168 (612)
.|.++|+.+++.+.++.. .....++++++||+++++++ .++.+.++|.++.+.++.+... ...+.++..+
T Consensus 59 ~vsviD~~~~~~v~~i~~--G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s 136 (369)
T PF02239_consen 59 TVSVIDLATGKVVATIKV--GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVAS 136 (369)
T ss_dssp EEEEEETTSSSEEEEEE---SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-
T ss_pred eEEEEECCcccEEEEEec--CCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEec
Confidence 999999999999988854 35678999999999988775 6899999999999999887643 3467888888
Q ss_pred CCCCEEEEe-C--CeEEEEEcCCCeeEE-EEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccce------
Q 007234 169 SDGKMLATA-A--GQLKTFNCSDHKKMQ-KFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS------ 238 (612)
Q Consensus 169 pdg~~l~~~-~--g~i~lwd~~~~~~~~-~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~------ 238 (612)
|.+..++.. - +.|.+.|....+.+. +............|+|+++|++.+...++.|-++|..+++.....
T Consensus 137 ~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p 216 (369)
T PF02239_consen 137 PGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKP 216 (369)
T ss_dssp SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSB
T ss_pred CCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccc
Confidence 888855554 3 899999987764332 222344567789999999998887777889999998887543100
Q ss_pred ---eeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhh
Q 007234 239 ---CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIF 315 (612)
Q Consensus 239 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~ 315 (612)
....+.|+..-.- .... ..+...++.-..+.+.+||..+.+.++.++........ ...|+++ .+.
T Consensus 217 ~~~~~~~~php~~g~v-w~~~-----~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi--~thP~s~----~vw 284 (369)
T PF02239_consen 217 HPGPGANFPHPGFGPV-WATS-----GLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFI--KTHPDSR----YVW 284 (369)
T ss_dssp EETTEEEEEETTTEEE-EEEE-----BSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--E--E--TT-S----EEE
T ss_pred cccccccccCCCcceE-Eeec-----cccceecccccCCccccchhhcCeEEEEEECCCCccee--ecCCCCc----cEE
Confidence 0111122222110 1111 23333333333346667888888777655433222111 1256665 444
Q ss_pred cccccceecCCCceEEEEeCCccCceEEEeeccC-CCeEEEEecCCCceEecccccee-eeccee
Q 007234 316 AAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNS-GEDINLNCSQDGVLLPMSQSLLK-SKRGRY 378 (612)
Q Consensus 316 ~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~-~~v~~l~~S~dg~~l~~s~s~d~-~~~~w~ 378 (612)
+...-+ .....+.+.+-... ....++.... ..+..+.|++||+++-+|.-..+ .+.+++
T Consensus 285 vd~~~~---~~~~~v~viD~~tl-~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D 345 (369)
T PF02239_consen 285 VDTFLN---PDADTVQVIDKKTL-KVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYD 345 (369)
T ss_dssp EE-TT----SSHT-EEEEECCGT-EEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEE
T ss_pred eeccCC---CCCceEEEEECcCc-ceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEE
Confidence 431111 00233334332222 2223333222 24889999999998834433332 444443
No 206
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.51 E-value=1.2e-12 Score=139.25 Aligned_cols=254 Identities=16% Similarity=0.197 Sum_probs=171.9
Q ss_pred cccceeEEEEcCCCCEEEEEeCCCcEEEEEC-CCC----cEEEEeeccCCccccccccccccccccccceeEEEeeeccc
Q 007234 4 SNIRDILTSFSPALDYFAICSGDARIKIWDT-LKG----QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDR 78 (612)
Q Consensus 4 ~~V~~l~~~fspdg~~las~s~dg~i~iwd~-~~~----~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~ 78 (612)
..|.+++.-=--|..++.+|+.||.||||+- .++ +.+..+.+..+- ..+..+ ....+.|....
T Consensus 1110 t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~----------~~~~r~-~~~v~dWqQ~~- 1177 (1387)
T KOG1517|consen 1110 TRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQ----------LPGARG-TGLVVDWQQQS- 1177 (1387)
T ss_pred CccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeecccccc----------CccCCC-CCeeeehhhhC-
Confidence 3455553333335678999999999999953 332 333333322110 011111 12445676654
Q ss_pred ccccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEec-CCCEEEEEecCCcEEEEECCCCc---eeEE
Q 007234 79 KKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGS---LLGK 154 (612)
Q Consensus 79 ~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp-~~~~l~s~s~dg~v~iwd~~~~~---~~~~ 154 (612)
| .+++++.-..|+|||.....+...+..+....|+++.-+- .|+.++.|..||.|++||.+... .+..
T Consensus 1178 -------G-~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~ 1249 (1387)
T KOG1517|consen 1178 -------G-HLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCV 1249 (1387)
T ss_pred -------C-eEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCcccccee
Confidence 3 3444444777999999999998888777777888886544 56889999999999999987543 4667
Q ss_pred EecCCCC--eeEEEECCCCCE-EEEeC--CeEEEEEcCCCee--EEEEecCC--C-CEEEEEEeeCCcEEEEEEcCCCeE
Q 007234 155 FRASTKG--ISCMAVSSDGKM-LATAA--GQLKTFNCSDHKK--MQKFSGHP--G-AVRFMTFSDNGKYVLSSAVGERYI 224 (612)
Q Consensus 155 ~~~~~~~--v~~l~~spdg~~-l~~~~--g~i~lwd~~~~~~--~~~~~~h~--~-~v~~l~~sp~~~~l~s~s~~d~~i 224 (612)
++.|... |..+.+.+.|-- |++|+ |.|++||++.... ...+..|. + ..+++..+++...+++++ . +.|
T Consensus 1250 ~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs-~-q~i 1327 (1387)
T KOG1517|consen 1250 YREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGS-A-QLI 1327 (1387)
T ss_pred ecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecC-c-ceE
Confidence 7778775 999999886654 88887 9999999998422 22222333 3 589999999999888876 4 899
Q ss_pred EEEEcCCCcccccee-eEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCc
Q 007234 225 ALWRTDGVKKQSASC-VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (612)
Q Consensus 225 ~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~ 284 (612)
+||++.......... -..+........++.|. |-.-++++|+.|.+|.||.....
T Consensus 1328 kIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FH-----P~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1328 KIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFH-----PHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred EEEecChhhhcccccCcccccCcCCCcceeeec-----chhHhhhhccCCceEEEeecCCc
Confidence 999987765431110 00111223334677776 88888999999999999986654
No 207
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.51 E-value=4.8e-13 Score=135.40 Aligned_cols=231 Identities=15% Similarity=0.204 Sum_probs=159.5
Q ss_pred CcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccc
Q 007234 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (612)
Q Consensus 3 s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (612)
...|+ |++||.||+.+|+|+.|..|.+|+..-...+ .+ .|... +.|+.|+|-
T Consensus 53 KDtVy--cVAys~dGkrFASG~aDK~VI~W~~klEG~L-kY-SH~D~------------------IQCMsFNP~------ 104 (1081)
T KOG1538|consen 53 KDTVY--CVAYAKDGKRFASGSADKSVIIWTSKLEGIL-KY-SHNDA------------------IQCMSFNPI------ 104 (1081)
T ss_pred cceEE--EEEEccCCceeccCCCceeEEEeccccccee-ee-ccCCe------------------eeEeecCch------
Confidence 34564 5599999999999999999999986533222 22 24443 445555444
Q ss_pred ccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEec---CC
Q 007234 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA---ST 159 (612)
Q Consensus 83 ~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~---~~ 159 (612)
...+++++- ...-+|+........ ......|.+++|..||++|+-|-.||+|.+-+ ..++....+.. ..
T Consensus 105 ---~h~LasCsL-sdFglWS~~qK~V~K---~kss~R~~~CsWtnDGqylalG~~nGTIsiRN-k~gEek~~I~Rpgg~N 176 (1081)
T KOG1538|consen 105 ---THQLASCSL-SDFGLWSPEQKSVSK---HKSSSRIICCSWTNDGQYLALGMFNGTISIRN-KNGEEKVKIERPGGSN 176 (1081)
T ss_pred ---HHHhhhcch-hhccccChhhhhHHh---hhhheeEEEeeecCCCcEEEEeccCceEEeec-CCCCcceEEeCCCCCC
Confidence 344555544 345678776655432 12456789999999999999999999999987 45655555543 55
Q ss_pred CCeeEEEECCCC-----CEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCC
Q 007234 160 KGISCMAVSSDG-----KMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (612)
Q Consensus 160 ~~v~~l~~spdg-----~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~ 232 (612)
.+|.+++|+|.. ..+++.+ .++.+|.+. |+.+.+-+.-.-...|+.+.++|.+++.+| .|+.+.+|.-+.-
T Consensus 177 spiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiGG-sdk~L~~fTR~Gv 254 (1081)
T KOG1538|consen 177 SPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLGG-SDKQLSLFTRDGV 254 (1081)
T ss_pred CCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEEcc-CCCceEEEeecCe
Confidence 699999999853 4666766 567777663 444433333334457889999999999998 4999999875443
Q ss_pred ccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECC
Q 007234 233 KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (612)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~ 282 (612)
. .-+.......+-.+... |+++.++.|+.||+|-.|++-
T Consensus 255 r------LGTvg~~D~WIWtV~~~-----PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 255 R------LGTVGEQDSWIWTVQAK-----PNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred E------EeeccccceeEEEEEEc-----cCCceEEEEEccCeeehhhhH
Confidence 2 22333344444455555 999999999999999999853
No 208
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.50 E-value=3.3e-12 Score=127.74 Aligned_cols=183 Identities=18% Similarity=0.277 Sum_probs=142.2
Q ss_pred CcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecC------C
Q 007234 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS------T 159 (612)
Q Consensus 86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~------~ 159 (612)
..-|++++....|+-+++++|..+..+. ...+.++++..++...+|++|+.+|.|..||.++...+.++... .
T Consensus 145 scDly~~gsg~evYRlNLEqGrfL~P~~-~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~p 223 (703)
T KOG2321|consen 145 SCDLYLVGSGSEVYRLNLEQGRFLNPFE-TDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHP 223 (703)
T ss_pred CccEEEeecCcceEEEEccccccccccc-cccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCc
Confidence 3447788888889999999999886663 45688999999998889999999999999999988777666432 2
Q ss_pred C-----CeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEE-ecCCCCEEEEEEeeC--CcEEEEEEcCCCeEEEEEc
Q 007234 160 K-----GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKF-SGHPGAVRFMTFSDN--GKYVLSSAVGERYIALWRT 229 (612)
Q Consensus 160 ~-----~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~-~~h~~~v~~l~~sp~--~~~l~s~s~~d~~i~vwd~ 229 (612)
+ .|+++.|+.+|-.+++|. |.+.|||+++.+++..- .+..-+|..+.|.+. ++.+++. ....++|||-
T Consensus 224 g~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~--Dk~~~kiWd~ 301 (703)
T KOG2321|consen 224 GGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM--DKRILKIWDE 301 (703)
T ss_pred cccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec--chHHhhhccc
Confidence 2 499999999999999998 99999999998876433 344568889999775 4456654 4788999999
Q ss_pred CCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECC
Q 007234 230 DGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (612)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~ 282 (612)
.+++.. ..+..... +...|+- |++.+++++..++.+..|=+.
T Consensus 302 ~~Gk~~-----asiEpt~~-lND~C~~-----p~sGm~f~Ane~~~m~~yyiP 343 (703)
T KOG2321|consen 302 CTGKPM-----ASIEPTSD-LNDFCFV-----PGSGMFFTANESSKMHTYYIP 343 (703)
T ss_pred ccCCce-----eeccccCC-cCceeee-----cCCceEEEecCCCcceeEEcc
Confidence 998754 23333333 4445554 899999999999888777543
No 209
>PF04003 Utp12: Dip2/Utp12 Family; InterPro: IPR007148 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. This domain is found at the C terminus of proteins containing WD40 repeats. These proteins are part of the U3 ribonucleoprotein. In yeast, these proteins are called Utp5, Utp1 or Pwp2, Utp12 or DIP2 Q12220 from SWISSPROT. They interact with snoRNA U3 and with MPP10 []. Pwp2 is an essential Saccharomyces cerevisiae (Baker's yeast) protein involved in cell separation.
Probab=99.50 E-value=2.4e-14 Score=120.01 Aligned_cols=82 Identities=30% Similarity=0.427 Sum_probs=77.5
Q ss_pred cccccCChhHHHHhhhccChhhHHHHHHHHHHHHh-cCCCCccchHHHHHHHHHHhcccccCC-cChHHHHHHHHHHHHh
Q 007234 484 DFETNIPVKKMRATILSLSPTNACKLLEVLVDLWQ-SRSYKGKNILQWIYFILVNHGHHLLSQ-ESLTPMLSSLYKVFRS 561 (612)
Q Consensus 484 ~~~~~~~~~~I~~ti~~Lp~~~~~~lL~~l~~~l~-~~~~~~~~~~~W~~~ll~~H~~~l~s~-~~l~~~L~~l~~~l~~ 561 (612)
+|++.+|+++|++|+++||++|+.+||++|+++++ +++.+.|++++|++++|+.||+||++. +++++.|..|++.+++
T Consensus 8 ~vl~~~~~~~I~~tv~~Lp~~~~~~LL~~l~~~l~~~~~~~~e~~l~Wl~~ll~~H~~~l~~~~~~~~~~L~~L~~~l~~ 87 (110)
T PF04003_consen 8 EVLERIPPSDIENTVRSLPFSYAERLLQFLSERLQTRKSPHVEFLLRWLKALLKTHGSYLSSSSPELRPVLRSLQKILRE 87 (110)
T ss_pred HHHhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 57788899999999999999999999999999998 777889999999999999999999999 9999999999999999
Q ss_pred hccc
Q 007234 562 ASCK 565 (612)
Q Consensus 562 r~~~ 565 (612)
|.+.
T Consensus 88 ~~~~ 91 (110)
T PF04003_consen 88 RLQN 91 (110)
T ss_pred HHHH
Confidence 8665
No 210
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.48 E-value=4.4e-12 Score=117.58 Aligned_cols=132 Identities=18% Similarity=0.327 Sum_probs=99.6
Q ss_pred CcEEEEEcCCC-eEEEEeccCCCCCeEEEEEecCCCEEEEE--ecCCcEEEEECCCCceeEEEecCCCCeeEEEECCCCC
Q 007234 96 GDVLALAVSAG-QLKWRLSDCHPGGVSAISFATHGSCIYSA--GADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGK 172 (612)
Q Consensus 96 g~I~vwd~~~~-~~~~~~~~~h~~~V~~l~~sp~~~~l~s~--s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~ 172 (612)
|...+|-++.. .....+.....++|.+++|+|+|+.|+++ ..++.|.+||++ ++.+..+. ...+..+.|+|+|+
T Consensus 37 ~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~ 113 (194)
T PF08662_consen 37 GEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGR 113 (194)
T ss_pred eeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCC
Confidence 34555555322 22223322345679999999999987654 357799999996 66666664 46778999999999
Q ss_pred EEEEeC-----CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcC-----CCeEEEEEcCCC
Q 007234 173 MLATAA-----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVG-----ERYIALWRTDGV 232 (612)
Q Consensus 173 ~l~~~~-----g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~-----d~~i~vwd~~~~ 232 (612)
++++++ |.|.+||+++.+.+.++. |. .++.++|+|+|++++++... |..++||+....
T Consensus 114 ~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 114 FLVLAGFGNLNGDLEFWDVRKKKKISTFE-HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred EEEEEEccCCCcEEEEEECCCCEEeeccc-cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCe
Confidence 999886 579999999998887765 33 47899999999999998753 678999998644
No 211
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.48 E-value=1e-12 Score=128.94 Aligned_cols=290 Identities=18% Similarity=0.248 Sum_probs=195.2
Q ss_pred CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (612)
Q Consensus 2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (612)
+.+-|+.+ .|...|..|++||.|.+|.+||+..+.....|.+ ||....+..- |.|...
T Consensus 141 H~GcVntV--~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~S----------------GH~~NvfQaK-FiP~s~--- 198 (559)
T KOG1334|consen 141 HKGCVNTV--HFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFES----------------GHCNNVFQAK-FIPFSG--- 198 (559)
T ss_pred CCCcccee--eecccCceeeccCccceEEeehhhccCccccccc----------------ccccchhhhh-ccCCCC---
Confidence 35667767 9999999999999999999999999988776631 3332222222 444432
Q ss_pred cccCCcEEEEEECCCcEEEEEcCC-CeEE-EEeccCCCCCeEEEEEecCCCE-EEEEecCCcEEEEECCCCceeEEEe--
Q 007234 82 RKLGSSLLVLGTGGGDVLALAVSA-GQLK-WRLSDCHPGGVSAISFATHGSC-IYSAGADGMVCEIDPLTGSLLGKFR-- 156 (612)
Q Consensus 82 ~~~~~~~l~~gs~~g~I~vwd~~~-~~~~-~~~~~~h~~~V~~l~~sp~~~~-l~s~s~dg~v~iwd~~~~~~~~~~~-- 156 (612)
..-+++++.||.|++=.+.. +.+. ......|.++|.-++.-|+..+ |.+++.|+.+.-+|++.+.+...+.
T Consensus 199 ----d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr 274 (559)
T KOG1334|consen 199 ----DRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCR 274 (559)
T ss_pred ----CcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeee
Confidence 56689999999998876643 3332 2333579999999999997654 9999999999999998876544432
Q ss_pred -cCCC---CeeEEEECCCCC-EEEEeC--CeEEEEEcCCCe------eEEEEec------CCCCEEEEEEeeCCcEEEEE
Q 007234 157 -ASTK---GISCMAVSSDGK-MLATAA--GQLKTFNCSDHK------KMQKFSG------HPGAVRFMTFSDNGKYVLSS 217 (612)
Q Consensus 157 -~~~~---~v~~l~~spdg~-~l~~~~--g~i~lwd~~~~~------~~~~~~~------h~~~v~~l~~sp~~~~l~s~ 217 (612)
.+.. ....++..|... .+++++ .-+++||.+.-. .+.++-. ..-.|++++|+.++.-++++
T Consensus 275 ~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaS 354 (559)
T KOG1334|consen 275 EADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLAS 354 (559)
T ss_pred ccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeee
Confidence 2333 678899999776 566666 578999876421 2233322 23458999999776656655
Q ss_pred EcCCCeEEEEEcCCCcc----------ccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCccee
Q 007234 218 AVGERYIALWRTDGVKK----------QSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL 287 (612)
Q Consensus 218 s~~d~~i~vwd~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~ 287 (612)
- .|-.|+++.-.-+.. ...++++...-....+..+-|- .|...++++|+.=|.|.||+-.+++.+
T Consensus 355 Y-nDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFf----GPrsEyVvSGSDCGhIFiW~K~t~eii 429 (559)
T KOG1334|consen 355 Y-NDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFF----GPRSEYVVSGSDCGHIFIWDKKTGEII 429 (559)
T ss_pred e-cccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeec----cCccceEEecCccceEEEEecchhHHH
Confidence 3 688899985433221 0011112211112223334332 288999999999999999999999999
Q ss_pred cccCCceeEeecccccCCCCcccchhhhcccccceecCCC
Q 007234 288 RNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPAS 327 (612)
Q Consensus 288 ~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~ 327 (612)
+-....+..+.|.. |... .+.+++++.+.-+++|.
T Consensus 430 ~~MegDr~VVNCLE---pHP~--~PvLAsSGid~DVKIWT 464 (559)
T KOG1334|consen 430 RFMEGDRHVVNCLE---PHPH--LPVLASSGIDHDVKIWT 464 (559)
T ss_pred HHhhcccceEeccC---CCCC--CchhhccCCccceeeec
Confidence 88777777666643 2222 45777777776555544
No 212
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.47 E-value=1.8e-13 Score=127.76 Aligned_cols=226 Identities=14% Similarity=0.134 Sum_probs=157.6
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEE
Q 007234 10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (612)
Q Consensus 10 ~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (612)
-|+|||+|+|+|+++.- ++.|=|..+-+..+.|.. -..+.-+.|.... -..+
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-------------------ldki~yieW~ads--------~~il 64 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-------------------LDKIVYIEWKADS--------CHIL 64 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-------------------HHHhhheeeeccc--------eeee
Confidence 46999999999999855 788889888776655432 1123345665442 3456
Q ss_pred EEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCE-EEEEecCCcEEEEECCCCceeEEEecCCCCeeEEEEC
Q 007234 90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSC-IYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVS 168 (612)
Q Consensus 90 ~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~-l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~s 168 (612)
.....++.|.+|++.+.+-..++. ....++.+++|||||+. |.+...|-.|.+|.+.+.+.... +-.+..+..++|+
T Consensus 65 C~~yk~~~vqvwsl~Qpew~ckId-eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~-~~pK~~~kg~~f~ 142 (447)
T KOG4497|consen 65 CVAYKDPKVQVWSLVQPEWYCKID-EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL-PHPKTNVKGYAFH 142 (447)
T ss_pred eeeeccceEEEEEeecceeEEEec-cCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe-cccccCceeEEEC
Confidence 667788999999999998877774 45678999999999966 55566799999999987665433 3334567899999
Q ss_pred CCCCEEEEeC-C----eEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEee
Q 007234 169 SDGKMLATAA-G----QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAM 243 (612)
Q Consensus 169 pdg~~l~~~~-g----~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~ 243 (612)
|||++.+..+ . -+.+..-+.-..++.+.-.+...+.+.|+|||..++. +|..+ .- .++ .
T Consensus 143 ~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laV---wd~~L-------ey-----kv~-a 206 (447)
T KOG4497|consen 143 PDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAV---WDNVL-------EY-----KVY-A 206 (447)
T ss_pred CCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEE---ecchh-------hh-----eee-e
Confidence 9999999887 1 2333323333456666666777889999999987765 23211 10 001 1
Q ss_pred cCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcce
Q 007234 244 EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE 286 (612)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~ 286 (612)
.+-+..+..+.++ |.++++++|+.|+.+++.+--+.+.
T Consensus 207 Ye~~lG~k~v~ws-----P~~qflavGsyD~~lrvlnh~tWk~ 244 (447)
T KOG4497|consen 207 YERGLGLKFVEWS-----PCNQFLAVGSYDQMLRVLNHFTWKP 244 (447)
T ss_pred eeeccceeEEEec-----cccceEEeeccchhhhhhceeeeee
Confidence 1222334456676 8899999999999999977544443
No 213
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.47 E-value=4.4e-12 Score=121.53 Aligned_cols=149 Identities=16% Similarity=0.219 Sum_probs=126.9
Q ss_pred CcEEEEEECC--CcEEEEEcCCCeEEEEeccCC--------CCCeEEEEEecC--CCEEEEEecCCcEEEEECCCC-cee
Q 007234 86 SSLLVLGTGG--GDVLALAVSAGQLKWRLSDCH--------PGGVSAISFATH--GSCIYSAGADGMVCEIDPLTG-SLL 152 (612)
Q Consensus 86 ~~~l~~gs~~--g~I~vwd~~~~~~~~~~~~~h--------~~~V~~l~~sp~--~~~l~s~s~dg~v~iwd~~~~-~~~ 152 (612)
..++++|+.. ..+.+||+++.+.+++-..-- .-.++++.|-+. ...|++++.-+.|++||.+.+ +++
T Consensus 161 p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV 240 (412)
T KOG3881|consen 161 PYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPV 240 (412)
T ss_pred CceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcce
Confidence 4567778888 779999999987766542211 123578889886 778999999999999999877 567
Q ss_pred EEEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEE-EecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEc
Q 007234 153 GKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQK-FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRT 229 (612)
Q Consensus 153 ~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~-~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~ 229 (612)
..|...+.+++++...|+|+++++|. |.+..||.++++.... +.|-.+.|+++..+|.+++++++| -|+.++|+|+
T Consensus 241 ~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~G-LDRyvRIhD~ 319 (412)
T KOG3881|consen 241 AQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCG-LDRYVRIHDI 319 (412)
T ss_pred eEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeec-cceeEEEeec
Confidence 78888888999999999999999998 9999999999998776 889999999999999999999998 6999999999
Q ss_pred CCCccc
Q 007234 230 DGVKKQ 235 (612)
Q Consensus 230 ~~~~~~ 235 (612)
.+.+..
T Consensus 320 ktrkll 325 (412)
T KOG3881|consen 320 KTRKLL 325 (412)
T ss_pred ccchhh
Confidence 996544
No 214
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.47 E-value=4.5e-14 Score=146.29 Aligned_cols=240 Identities=18% Similarity=0.166 Sum_probs=171.2
Q ss_pred cCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCee
Q 007234 114 DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKK 191 (612)
Q Consensus 114 ~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~ 191 (612)
.+|...|+|..|...|.++++|+.|..|++|.+.++.++....+|.+.++.++.+.+..++++++ ..|++|-+..+.+
T Consensus 187 lgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~p 266 (1113)
T KOG0644|consen 187 LGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAP 266 (1113)
T ss_pred HhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCch
Confidence 47999999999999999999999999999999999999999999999999999999998999888 5799999999999
Q ss_pred EEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEe
Q 007234 192 MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS 271 (612)
Q Consensus 192 ~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s 271 (612)
+..+.||++.|++++|+|-. +++ .||++++||.+-........-..+ ..........|. .++..+++++
T Consensus 267 vsvLrghtgavtaiafsP~~----sss-~dgt~~~wd~r~~~~~y~prp~~~-~~~~~~~s~~~~-----~~~~~f~Tgs 335 (1113)
T KOG0644|consen 267 VSVLRGHTGAVTAIAFSPRA----SSS-DDGTCRIWDARLEPRIYVPRPLKF-TEKDLVDSILFE-----NNGDRFLTGS 335 (1113)
T ss_pred HHHHhccccceeeeccCccc----cCC-CCCceEeccccccccccCCCCCCc-ccccceeeeecc-----cccccccccc
Confidence 99999999999999999964 444 799999999882211100000111 122333444454 6778899999
Q ss_pred cCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCC
Q 007234 272 ETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGE 351 (612)
Q Consensus 272 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~ 351 (612)
.|+.-..|...-..- .....+-+. ++.+.. ...+++..+-....|+ +.. ......+.+|...
T Consensus 336 ~d~ea~n~e~~~l~~---~~~~lif~t----~ssd~~---~~~~~ar~~~~~~vwn----l~~----g~l~H~l~ghsd~ 397 (1113)
T KOG0644|consen 336 RDGEARNHEFEQLAW---RSNLLIFVT----RSSDLS---SIVVTARNDHRLCVWN----LYT----GQLLHNLMGHSDE 397 (1113)
T ss_pred CCcccccchhhHhhh---hccceEEEe----cccccc---ccceeeeeeeEeeeee----ccc----chhhhhhcccccc
Confidence 999988887532211 010111111 011111 0223333322222211 112 2223466789889
Q ss_pred eEEEEecCCCceEeccccceeeecceeeecc
Q 007234 352 DINLNCSQDGVLLPMSQSLLKSKRGRYVQNR 382 (612)
Q Consensus 352 v~~l~~S~dg~~l~~s~s~d~~~~~w~~~~~ 382 (612)
+..+.+.|-...+.+++++|++.-+|++...
T Consensus 398 ~yvLd~Hpfn~ri~msag~dgst~iwdi~eg 428 (1113)
T KOG0644|consen 398 VYVLDVHPFNPRIAMSAGYDGSTIIWDIWEG 428 (1113)
T ss_pred eeeeeecCCCcHhhhhccCCCceEeeecccC
Confidence 9999999988877799999999999998543
No 215
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.46 E-value=1.2e-10 Score=108.97 Aligned_cols=175 Identities=17% Similarity=0.295 Sum_probs=124.3
Q ss_pred CcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEECCCcEEEEEcCCC
Q 007234 27 ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAG 106 (612)
Q Consensus 27 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~ 106 (612)
+.|.|||=...+++.++. ..++|.++.+.+ .. ++.-..+.|.||...++
T Consensus 75 NkviIWDD~k~~~i~el~-f~~~I~~V~l~r-----------------------------~r-iVvvl~~~I~VytF~~n 123 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELS-FNSEIKAVKLRR-----------------------------DR-IVVVLENKIYVYTFPDN 123 (346)
T ss_pred ceEEEEecccCcEEEEEE-eccceeeEEEcC-----------------------------Ce-EEEEecCeEEEEEcCCC
Confidence 479999977777777764 233333333332 22 33445678999998744
Q ss_pred -eEEEEecc-CCCCCeEEEEEecCCCEEEEE-ecCCcEEEEECCCCce--eEEEecCCCCeeEEEECCCCCEEEEeC--C
Q 007234 107 -QLKWRLSD-CHPGGVSAISFATHGSCIYSA-GADGMVCEIDPLTGSL--LGKFRASTKGISCMAVSSDGKMLATAA--G 179 (612)
Q Consensus 107 -~~~~~~~~-~h~~~V~~l~~sp~~~~l~s~-s~dg~v~iwd~~~~~~--~~~~~~~~~~v~~l~~spdg~~l~~~~--g 179 (612)
+.+..+.. .....+.+++-+.+...|+.- -.-|.|++-|+...+. ...+.+|...|.|++.+-+|..+|+++ |
T Consensus 124 ~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkG 203 (346)
T KOG2111|consen 124 PKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKG 203 (346)
T ss_pred hhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCc
Confidence 33333321 123344444433343444433 3568999999876655 577899999999999999999999999 5
Q ss_pred -eEEEEEcCCCeeEEEEecC--CCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCc
Q 007234 180 -QLKTFNCSDHKKMQKFSGH--PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (612)
Q Consensus 180 -~i~lwd~~~~~~~~~~~~h--~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~ 233 (612)
.|+|||..+|..+.+++.- ...|.+|+|||++.+|++++ +.|++.||.++...
T Consensus 204 TLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsS-dKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 204 TLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSS-DKGTLHIFSLRDTE 259 (346)
T ss_pred EEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEc-CCCeEEEEEeecCC
Confidence 6899999999999998632 35699999999999999887 79999999987643
No 216
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.43 E-value=6.2e-11 Score=120.96 Aligned_cols=193 Identities=18% Similarity=0.214 Sum_probs=133.9
Q ss_pred CcEEE-EEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeE
Q 007234 86 SSLLV-LGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISC 164 (612)
Q Consensus 86 ~~~l~-~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~ 164 (612)
+++++ +-..+|.|.+.|..+.+.+.++..+ ...-..+.|+|||+++++++.||.|.++|+.+++.+.+++... ...+
T Consensus 5 ~~l~~V~~~~~~~v~viD~~t~~~~~~i~~~-~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~ 82 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDGATNKVVARIPTG-GAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRG 82 (369)
T ss_dssp GGEEEEEEGGGTEEEEEETTT-SEEEEEE-S-TTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEE
T ss_pred ccEEEEEecCCCEEEEEECCCCeEEEEEcCC-CCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-Ccce
Confidence 44554 4556789999999999999888543 2334557899999999999999999999999999999998644 4688
Q ss_pred EEECCCCCEEEEeC---CeEEEEEcCCCeeEEEEecC-------CCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCcc
Q 007234 165 MAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGH-------PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK 234 (612)
Q Consensus 165 l~~spdg~~l~~~~---g~i~lwd~~~~~~~~~~~~h-------~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~ 234 (612)
+++++||++++++. +.+.++|.++.++++.++.. ...+..+..+|....++..-.+.+.|.+-|....+.
T Consensus 83 i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~ 162 (369)
T PF02239_consen 83 IAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKN 162 (369)
T ss_dssp EEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSC
T ss_pred EEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccc
Confidence 99999999999887 89999999999999888643 346788888998886666554457777777766543
Q ss_pred ccceeeEeecCCceeEEeEEecCCccCCCCcEEEEE-ecCCcEEEEECCCcceecc
Q 007234 235 QSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAI-SETGVCYIWYGQNIEELRN 289 (612)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~-s~dg~i~iwd~~~~~~~~~ 289 (612)
. ..... .......-..++ |++++++++ ..++.|-++|.++++.+..
T Consensus 163 ~---~~~~i-~~g~~~~D~~~d-----pdgry~~va~~~sn~i~viD~~~~k~v~~ 209 (369)
T PF02239_consen 163 L---KVTTI-KVGRFPHDGGFD-----PDGRYFLVAANGSNKIAVIDTKTGKLVAL 209 (369)
T ss_dssp E---EEEEE-E--TTEEEEEE------TTSSEEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred c---ceeee-cccccccccccC-----cccceeeecccccceeEEEeeccceEEEE
Confidence 2 11222 223333445666 999987765 4577999999998877643
No 217
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.43 E-value=5.1e-12 Score=118.06 Aligned_cols=200 Identities=12% Similarity=0.152 Sum_probs=152.3
Q ss_pred CcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCc---EEEEeeccCCccccccccccccccccccceeEEEeeecccc
Q 007234 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ---VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK 79 (612)
Q Consensus 3 s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~---~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~ 79 (612)
.+||+ |.||++|++.+|.+.....|.||.....+ ..++++.|.. ..+++.|.+.
T Consensus 10 ~~pit--chAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~------------------~vtgvdWap~--- 66 (361)
T KOG1523|consen 10 LEPIT--CHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDK------------------IVTGVDWAPK--- 66 (361)
T ss_pred cCcee--eeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCc------------------ceeEEeecCC---
Confidence 36774 55999999999999999999999887665 4555655544 3455666665
Q ss_pred cccccCCcEEEEEECCCcEEEEEc-CCCeE--EEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCce----e
Q 007234 80 KKRKLGSSLLVLGTGGGDVLALAV-SAGQL--KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL----L 152 (612)
Q Consensus 80 ~~~~~~~~~l~~gs~~g~I~vwd~-~~~~~--~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~----~ 152 (612)
.+.|++|+.|.+-+||.. ..+.- ...+ ..|....+++.|+|.++.|++||.-..|.+|=++...- .
T Consensus 67 ------snrIvtcs~drnayVw~~~~~~~WkptlvL-lRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsK 139 (361)
T KOG1523|consen 67 ------SNRIVTCSHDRNAYVWTQPSGGTWKPTLVL-LRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSK 139 (361)
T ss_pred ------CCceeEccCCCCccccccCCCCeeccceeE-EEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhh
Confidence 567999999999999998 44432 2223 35888999999999999999999999998887654321 1
Q ss_pred EEEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEc-----CC-------------CeeEEEEecCCCCEEEEEEeeCCc
Q 007234 153 GKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNC-----SD-------------HKKMQKFSGHPGAVRFMTFSDNGK 212 (612)
Q Consensus 153 ~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~-----~~-------------~~~~~~~~~h~~~v~~l~~sp~~~ 212 (612)
+.-+.++..|+++.|+|++-+|++|+ +..++|.. +. |+++.++....+.|..+.|+|+|.
T Consensus 140 hikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~ 219 (361)
T KOG1523|consen 140 HIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGN 219 (361)
T ss_pred hhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCC
Confidence 12233567899999999999999998 77777753 21 233445545678899999999999
Q ss_pred EEEEEEcCCCeEEEEEcCCCc
Q 007234 213 YVLSSAVGERYIALWRTDGVK 233 (612)
Q Consensus 213 ~l~s~s~~d~~i~vwd~~~~~ 233 (612)
.|+-.+ .|..+.+-|.....
T Consensus 220 ~lawv~-Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 220 RLAWVG-HDSTVSFVDAAGPS 239 (361)
T ss_pred EeeEec-CCCceEEeecCCCc
Confidence 999998 79999999987765
No 218
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.43 E-value=7.8e-11 Score=124.51 Aligned_cols=215 Identities=18% Similarity=0.190 Sum_probs=141.7
Q ss_pred CcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEEC---CCcEEEEEc
Q 007234 27 ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG---GGDVLALAV 103 (612)
Q Consensus 27 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~---~g~I~vwd~ 103 (612)
..|.+||.... ....+..+...+....|+++ ++.|+..+. +..|++||+
T Consensus 182 ~~l~~~d~dg~-~~~~lt~~~~~v~~p~wSpD---------------------------G~~lay~s~~~g~~~i~~~dl 233 (435)
T PRK05137 182 KRLAIMDQDGA-NVRYLTDGSSLVLTPRFSPN---------------------------RQEITYMSYANGRPRVYLLDL 233 (435)
T ss_pred eEEEEECCCCC-CcEEEecCCCCeEeeEECCC---------------------------CCEEEEEEecCCCCEEEEEEC
Confidence 37888898544 44445555555555555554 666666553 346999999
Q ss_pred CCCeEEEEeccCCCCCeEEEEEecCCCEEE-EEecCCc--EEEEECCCCceeEEEecCCCCeeEEEECCCCCEEEEeC--
Q 007234 104 SAGQLKWRLSDCHPGGVSAISFATHGSCIY-SAGADGM--VCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-- 178 (612)
Q Consensus 104 ~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~-s~s~dg~--v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~-- 178 (612)
.+++.. .+ ..+.+.+.+.+|+|||+.|+ +.+.++. |++||+.+++. ..+..+........|+|||+.++..+
T Consensus 234 ~~g~~~-~l-~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~ 310 (435)
T PRK05137 234 ETGQRE-LV-GNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDR 310 (435)
T ss_pred CCCcEE-Ee-ecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECC
Confidence 988764 23 34566788999999998865 5555554 78889887765 34554555667899999999888765
Q ss_pred -C--eEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCC--CeEEEEEcCCCccccceeeEeecCCceeEEeE
Q 007234 179 -G--QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE--RYIALWRTDGVKKQSASCVLAMEHPAVFMDCR 253 (612)
Q Consensus 179 -g--~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d--~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (612)
| .|++||+.+++. ..+..+...+....|+|+|++++..+... ..|.+||+.++... . +.... .....
T Consensus 311 ~g~~~Iy~~d~~g~~~-~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~----~--lt~~~-~~~~p 382 (435)
T PRK05137 311 SGSPQLYVMNADGSNP-RRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGER----I--LTSGF-LVEGP 382 (435)
T ss_pred CCCCeEEEEECCCCCe-EEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceE----e--ccCCC-CCCCC
Confidence 2 789999877654 34444455667789999999998876322 36888887655322 1 11111 22344
Q ss_pred EecCCccCCCCcEEEEEecC------CcEEEEECCCcc
Q 007234 254 CIDNGGVDDAGLYVLAISET------GVCYIWYGQNIE 285 (612)
Q Consensus 254 ~~~~~~~~~~~~~l~t~s~d------g~i~iwd~~~~~ 285 (612)
.|+ |||++|+..+.+ ..++++|+..+.
T Consensus 383 ~~s-----pDG~~i~~~~~~~~~~~~~~L~~~dl~g~~ 415 (435)
T PRK05137 383 TWA-----PNGRVIMFFRQTPGSGGAPKLYTVDLTGRN 415 (435)
T ss_pred eEC-----CCCCEEEEEEccCCCCCcceEEEEECCCCc
Confidence 565 999998776553 257777775543
No 219
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.42 E-value=8.3e-12 Score=116.65 Aligned_cols=206 Identities=8% Similarity=0.058 Sum_probs=154.2
Q ss_pred ccceeEEEeeecccccccccCCcEEEEEECCCcEEEEEcCCCe--EEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEE
Q 007234 65 SVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQ--LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVC 142 (612)
Q Consensus 65 ~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~ 142 (612)
...++|.+|.+. ...++++..+..|.||....++ .....+..|...|+++.|+|..+.|++|+.|..-+
T Consensus 10 ~~pitchAwn~d---------rt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnay 80 (361)
T KOG1523|consen 10 LEPITCHAWNSD---------RTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAY 80 (361)
T ss_pred cCceeeeeecCC---------CceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCcc
Confidence 346778888776 7789999999999999998776 22334467999999999999999999999999999
Q ss_pred EEECCC-C--ceeEEEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeE----EEEecCCCCEEEEEEeeCCcE
Q 007234 143 EIDPLT-G--SLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKM----QKFSGHPGAVRFMTFSDNGKY 213 (612)
Q Consensus 143 iwd~~~-~--~~~~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~----~~~~~h~~~v~~l~~sp~~~~ 213 (612)
+|.... + ++.-.+..+...++++.|+|.++.+|+|+ ..|.||-++...-- ..-..+.+.|+++.|+|++-+
T Consensus 81 Vw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVL 160 (361)
T KOG1523|consen 81 VWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVL 160 (361)
T ss_pred ccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcce
Confidence 999833 3 34445556788999999999999999999 57788776543211 111346788999999999988
Q ss_pred EEEEEcCCCeEEEEEcCCCcc-----c-------c-ceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEE
Q 007234 214 VLSSAVGERYIALWRTDGVKK-----Q-------S-ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY 280 (612)
Q Consensus 214 l~s~s~~d~~i~vwd~~~~~~-----~-------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd 280 (612)
+++++ .|+.++|+...-... . . ...+.........+..+.|+ |+|..|+-.+.|..+.+=|
T Consensus 161 laaGs-~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs-----~sG~~lawv~Hds~v~~~d 234 (361)
T KOG1523|consen 161 LAAGS-TDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFS-----PSGNRLAWVGHDSTVSFVD 234 (361)
T ss_pred ecccc-cCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeC-----CCCCEeeEecCCCceEEee
Confidence 88876 799999997532110 0 0 00111222344556777787 9999999999999999988
Q ss_pred CCCcc
Q 007234 281 GQNIE 285 (612)
Q Consensus 281 ~~~~~ 285 (612)
.....
T Consensus 235 a~~p~ 239 (361)
T KOG1523|consen 235 AAGPS 239 (361)
T ss_pred cCCCc
Confidence 76554
No 220
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.42 E-value=4.5e-11 Score=125.65 Aligned_cols=191 Identities=16% Similarity=0.196 Sum_probs=126.7
Q ss_pred eEEEEcCCCCEEEEEeC---CCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccC
Q 007234 9 ILTSFSPALDYFAICSG---DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLG 85 (612)
Q Consensus 9 l~~~fspdg~~las~s~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 85 (612)
...+|||||+.||..+. +..|.+||+.+|+..... ...+... ...|.|.
T Consensus 202 ~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~-~~~~~~~------------------~~~~SPD--------- 253 (429)
T PRK03629 202 MSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA-SFPRHNG------------------APAFSPD--------- 253 (429)
T ss_pred eeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEcc-CCCCCcC------------------CeEECCC---------
Confidence 45699999999987653 457999999888654322 1111111 2344443
Q ss_pred CcEEEEE-ECCCc--EEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecC-C--cEEEEECCCCceeEEEecCC
Q 007234 86 SSLLVLG-TGGGD--VLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD-G--MVCEIDPLTGSLLGKFRAST 159 (612)
Q Consensus 86 ~~~l~~g-s~~g~--I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~d-g--~v~iwd~~~~~~~~~~~~~~ 159 (612)
++.|+.. +.+|. |++||+.+++.. .+.. +...+....|+|||+.|+.++.+ + .|+.+|+.+++. ..+....
T Consensus 254 G~~La~~~~~~g~~~I~~~d~~tg~~~-~lt~-~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~ 330 (429)
T PRK03629 254 GSKLAFALSKTGSLNLYVMDLASGQIR-QVTD-GRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWEG 330 (429)
T ss_pred CCEEEEEEcCCCCcEEEEEECCCCCEE-EccC-CCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeecCC
Confidence 5555544 55554 899999988765 3333 44567899999999988777654 4 455557776654 3333344
Q ss_pred CCeeEEEECCCCCEEEEeC-----CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCC---eEEEEEcCC
Q 007234 160 KGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER---YIALWRTDG 231 (612)
Q Consensus 160 ~~v~~l~~spdg~~l~~~~-----g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~---~i~vwd~~~ 231 (612)
....+..|+|||++++..+ ..|++||+.+++. ..+... .......|+|||+.++.++ .++ .+.+++++.
T Consensus 331 ~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~-~~Lt~~-~~~~~p~~SpDG~~i~~~s-~~~~~~~l~~~~~~G 407 (429)
T PRK03629 331 SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLTDT-FLDETPSIAPNGTMVIYSS-SQGMGSVLNLVSTDG 407 (429)
T ss_pred CCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCe-EEeCCC-CCCCCceECCCCCEEEEEE-cCCCceEEEEEECCC
Confidence 4566789999999998764 3689999988864 334322 2334678999999999887 454 366777755
Q ss_pred Cc
Q 007234 232 VK 233 (612)
Q Consensus 232 ~~ 233 (612)
..
T Consensus 408 ~~ 409 (429)
T PRK03629 408 RF 409 (429)
T ss_pred CC
Confidence 43
No 221
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.42 E-value=5.2e-11 Score=125.18 Aligned_cols=233 Identities=10% Similarity=0.014 Sum_probs=145.8
Q ss_pred cEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEec---CCcEEEEECCCCceeEEEecCCCCeeEEEECCCCCE
Q 007234 97 DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA---DGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKM 173 (612)
Q Consensus 97 ~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~---dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~ 173 (612)
.|.++|...+... .+ ..+...+.+.+|+|||+.|+..+. +..|++||+.+++.... ......+..++|+|||+.
T Consensus 180 ~l~~~d~dg~~~~-~l-t~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~~~~~~~~~SPDG~~ 256 (429)
T PRK03629 180 ELRVSDYDGYNQF-VV-HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFPRHNGAPAFSPDGSK 256 (429)
T ss_pred eEEEEcCCCCCCE-Ee-ecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc-cCCCCCcCCeEECCCCCE
Confidence 5889998766543 23 235678999999999999886542 45799999988864332 223344567899999998
Q ss_pred EEEeC---C--eEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEE--EcCCCccccceeeEeecCC
Q 007234 174 LATAA---G--QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALW--RTDGVKKQSASCVLAMEHP 246 (612)
Q Consensus 174 l~~~~---g--~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vw--d~~~~~~~~~~~~~~~~~~ 246 (612)
|+... | .|++||+++++.. .+..+...+....|+|||+.++.++..++...+| ++.++... .+...
T Consensus 257 La~~~~~~g~~~I~~~d~~tg~~~-~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~------~lt~~ 329 (429)
T PRK03629 257 LAFALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ------RITWE 329 (429)
T ss_pred EEEEEcCCCCcEEEEEECCCCCEE-EccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE------EeecC
Confidence 88652 3 6999999988654 4444555678899999999888776444444455 66555422 11111
Q ss_pred ceeEEeEEecCCccCCCCcEEEEEecC---CcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhccccccee
Q 007234 247 AVFMDCRCIDNGGVDDAGLYVLAISET---GVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIV 323 (612)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~t~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~ 323 (612)
........++ |||++++..+.+ ..|.+||+.+++...-.... . .....++|+++ .|+.++.++..
T Consensus 330 ~~~~~~~~~S-----pDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~--~-~~~p~~SpDG~----~i~~~s~~~~~ 397 (429)
T PRK03629 330 GSQNQDADVS-----SDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDTF--L-DETPSIAPNGT----MVIYSSSQGMG 397 (429)
T ss_pred CCCccCEEEC-----CCCCEEEEEEccCCCceEEEEECCCCCeEEeCCCC--C-CCCceECCCCC----EEEEEEcCCCc
Confidence 2222345566 999998887653 35888998887543211111 1 11233788888 66666655421
Q ss_pred cCCCceEEE--EeCCccCceEEEeeccCCCeEEEEecC
Q 007234 324 KPASVHTFV--AYGLLLKPSFQKILVNSGEDINLNCSQ 359 (612)
Q Consensus 324 ~~~~~~~~~--~~g~~~~~~~~~~~~h~~~v~~l~~S~ 359 (612)
..+.+ .+|.. ...+..|.+.+...+|||
T Consensus 398 ----~~l~~~~~~G~~----~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 398 ----SVLNLVSTDGRF----KARLPATDGQVKFPAWSP 427 (429)
T ss_pred ----eEEEEEECCCCC----eEECccCCCCcCCcccCC
Confidence 11111 12322 234556666677777776
No 222
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.41 E-value=7e-11 Score=124.73 Aligned_cols=214 Identities=14% Similarity=0.086 Sum_probs=140.1
Q ss_pred CcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEECC---CcEEEEEc
Q 007234 27 ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGG---GDVLALAV 103 (612)
Q Consensus 27 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~---g~I~vwd~ 103 (612)
.+|.+||...+ ..+.+..+...+....|+++ ++.|+..+.. ..|++||+
T Consensus 184 ~~l~i~D~~g~-~~~~lt~~~~~v~~p~wSpD---------------------------g~~la~~s~~~~~~~l~~~dl 235 (433)
T PRK04922 184 YALQVADSDGY-NPQTILRSAEPILSPAWSPD---------------------------GKKLAYVSFERGRSAIYVQDL 235 (433)
T ss_pred EEEEEECCCCC-CceEeecCCCccccccCCCC---------------------------CCEEEEEecCCCCcEEEEEEC
Confidence 36899998644 34445545555555556555 6667766633 35999999
Q ss_pred CCCeEEEEeccCCCCCeEEEEEecCCCEEE-EEecCC--cEEEEECCCCceeEEEecCCCCeeEEEECCCCCEEEEeC--
Q 007234 104 SAGQLKWRLSDCHPGGVSAISFATHGSCIY-SAGADG--MVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-- 178 (612)
Q Consensus 104 ~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~-s~s~dg--~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~-- 178 (612)
.+++... + ..+.+...++.|+|||+.++ +.+.+| .|++||+.+++.. .+..+.......+|+|||+.++.++
T Consensus 236 ~~g~~~~-l-~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~ 312 (433)
T PRK04922 236 ATGQREL-V-ASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDR 312 (433)
T ss_pred CCCCEEE-e-ccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECC
Confidence 9887642 2 23445556889999998765 555555 5999999887653 3444444557789999999888765
Q ss_pred -C--eEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCC--eEEEEEcCCCccccceeeEeecCCceeEEeE
Q 007234 179 -G--QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER--YIALWRTDGVKKQSASCVLAMEHPAVFMDCR 253 (612)
Q Consensus 179 -g--~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (612)
| .|+++|+.+++.. .+..+......++|+|+|++++..+..++ .|.+||+.+++.. .+.+... ....
T Consensus 313 ~g~~~iy~~dl~~g~~~-~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~------~Lt~~~~-~~~p 384 (433)
T PRK04922 313 GGRPQIYRVAASGGSAE-RLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR------TLTPGSL-DESP 384 (433)
T ss_pred CCCceEEEEECCCCCeE-EeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE------ECCCCCC-CCCc
Confidence 3 5888888777643 33333344557899999999887653332 6899999877533 1122111 1223
Q ss_pred EecCCccCCCCcEEEEEecC---CcEEEEECCCc
Q 007234 254 CIDNGGVDDAGLYVLAISET---GVCYIWYGQNI 284 (612)
Q Consensus 254 ~~~~~~~~~~~~~l~t~s~d---g~i~iwd~~~~ 284 (612)
.|+ |||++++..+.+ +.|.+++...+
T Consensus 385 ~~s-----pdG~~i~~~s~~~g~~~L~~~~~~g~ 413 (433)
T PRK04922 385 SFA-----PNGSMVLYATREGGRGVLAAVSTDGR 413 (433)
T ss_pred eEC-----CCCCEEEEEEecCCceEEEEEECCCC
Confidence 455 999988877663 35777777543
No 223
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.40 E-value=4.1e-11 Score=110.56 Aligned_cols=205 Identities=10% Similarity=0.135 Sum_probs=146.7
Q ss_pred cceeEEEeeecccccccccCCcEEEEEECCCcEEEEEcCCC--eEE-EEe-----ccCCCCCeEEEEEec-CCCEEEEEe
Q 007234 66 VDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAG--QLK-WRL-----SDCHPGGVSAISFAT-HGSCIYSAG 136 (612)
Q Consensus 66 ~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~--~~~-~~~-----~~~h~~~V~~l~~sp-~~~~l~s~s 136 (612)
...+.+.|.|...... .. ..++.+..+++|.+... +.. ... ...+..+++++.|+. +-+++.++|
T Consensus 97 YP~tK~~wiPd~~g~~----pd--lLATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS 170 (364)
T KOG0290|consen 97 YPVTKLMWIPDSKGVY----PD--LLATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS 170 (364)
T ss_pred CCccceEecCCccccC----cc--hhhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec
Confidence 4556777777652100 22 34556667999998742 211 111 134678999999987 667899999
Q ss_pred cCCcEEEEECCCCce---eEEEecCCCCeeEEEECCCCC-EEEEeC--CeEEEEEcCCCeeEEEE---ecCCCCEEEEEE
Q 007234 137 ADGMVCEIDPLTGSL---LGKFRASTKGISCMAVSSDGK-MLATAA--GQLKTFNCSDHKKMQKF---SGHPGAVRFMTF 207 (612)
Q Consensus 137 ~dg~v~iwd~~~~~~---~~~~~~~~~~v~~l~~spdg~-~l~~~~--g~i~lwd~~~~~~~~~~---~~h~~~v~~l~~ 207 (612)
-|-+..+||++++.. ...+-+|...|..++|...+. .+|+.+ |++++||++..+.-..+ +....+...++|
T Consensus 171 iDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLsw 250 (364)
T KOG0290|consen 171 IDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSW 250 (364)
T ss_pred ccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeecc
Confidence 999999999998743 445778999999999998665 455555 99999999876543333 233457788999
Q ss_pred eeCC-cEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCc
Q 007234 208 SDNG-KYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (612)
Q Consensus 208 sp~~-~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~ 284 (612)
++.. +++++-......|.+.|++.... .+..+..+...+..++|.+ ..+.++++++.|..+.+||+...
T Consensus 251 nkqDpnymATf~~dS~~V~iLDiR~P~t----pva~L~~H~a~VNgIaWaP----hS~~hictaGDD~qaliWDl~q~ 320 (364)
T KOG0290|consen 251 NKQDPNYMATFAMDSNKVVILDIRVPCT----PVARLRNHQASVNGIAWAP----HSSSHICTAGDDCQALIWDLQQM 320 (364)
T ss_pred CcCCchHHhhhhcCCceEEEEEecCCCc----ceehhhcCcccccceEecC----CCCceeeecCCcceEEEEecccc
Confidence 8754 57777765567899999998753 3566677777777777762 45678999999999999998643
No 224
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.39 E-value=1.1e-10 Score=110.90 Aligned_cols=255 Identities=15% Similarity=0.182 Sum_probs=158.5
Q ss_pred CcccceeEEEEcCCC-CEEEEEeCCCcEEEEECCC-CcEEEEeeccCCccccccccccccccccccceeEEEeeeccccc
Q 007234 3 SSNIRDILTSFSPAL-DYFAICSGDARIKIWDTLK-GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (612)
Q Consensus 3 s~~V~~l~~~fspdg-~~las~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~ 80 (612)
+..|. |++|-|.+ .-||.|+..| |.||.... +..-.... ..+.....++..+ || ..++.+.|..+
T Consensus 140 Qrnvt--clawRPlsaselavgCr~g-IciW~~s~tln~~r~~~-~~s~~~~qvl~~p---gh--~pVtsmqwn~d---- 206 (445)
T KOG2139|consen 140 QRNVT--CLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIR-MMSTHHLQVLQDP---GH--NPVTSMQWNED---- 206 (445)
T ss_pred hccee--EEEeccCCcceeeeeecce-eEEEEcCcccccccccc-cccccchhheeCC---CC--ceeeEEEEcCC----
Confidence 45664 45999965 6788888765 78997642 21111111 1111111122222 33 57888999876
Q ss_pred ccccCCcEEEEEECC-CcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCC
Q 007234 81 KRKLGSSLLVLGTGG-GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST 159 (612)
Q Consensus 81 ~~~~~~~~l~~gs~~-g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~ 159 (612)
+..+++++-+ ..|.|||+.++..+.-. ...-+.++-+.|||||.+|+.+.-|+..++|+.........+....
T Consensus 207 -----gt~l~tAS~gsssi~iWdpdtg~~~pL~-~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgs 280 (445)
T KOG2139|consen 207 -----GTILVTASFGSSSIMIWDPDTGQKIPLI-PKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGS 280 (445)
T ss_pred -----CCEEeecccCcceEEEEcCCCCCccccc-ccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccC
Confidence 5667776654 55999999999886433 3355789999999999999999999999999654433333333345
Q ss_pred CCeeEEEECCCCCEEEEeC-CeEEEEEcCCCe---------------eEEEE------ec---CCCCEEEEEEeeCCcEE
Q 007234 160 KGISCMAVSSDGKMLATAA-GQLKTFNCSDHK---------------KMQKF------SG---HPGAVRFMTFSDNGKYV 214 (612)
Q Consensus 160 ~~v~~l~~spdg~~l~~~~-g~i~lwd~~~~~---------------~~~~~------~~---h~~~v~~l~~sp~~~~l 214 (612)
+.|...+|+|+|+.|+.+. |.=.+|.+.-.. .+..+ .+ --+++.+++|.|.|.+|
T Consensus 281 grvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyL 360 (445)
T KOG2139|consen 281 GRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYL 360 (445)
T ss_pred CceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEE
Confidence 6899999999999887665 766666553110 01111 11 13578899999999999
Q ss_pred EEEEcCCC--------eEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEEC
Q 007234 215 LSSAVGER--------YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (612)
Q Consensus 215 ~s~s~~d~--------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~ 281 (612)
++.- ..+ .|.+||.+..-... ..+-..........++|.+.. .++.+|..+=..|.+.-|++
T Consensus 361 av~f-Kg~~~v~~~k~~i~~fdtr~sp~ve--ls~cg~i~ge~P~~IsF~pl~--n~g~lLsiaWsTGriq~ypl 430 (445)
T KOG2139|consen 361 AVIF-KGQSFVLLCKLHISRFDTRKSPPVE--LSYCGMIGGEYPAYISFGPLK--NEGRLLSIAWSTGRIQRYPL 430 (445)
T ss_pred EEEE-cCCchhhhhhhhhhhhcccccCceE--EEecccccCCCCceEEeeecc--cCCcEEEEEeccCceEeeee
Confidence 9864 222 35667765543221 110000111113444454332 67788888777888888875
No 225
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.39 E-value=4.2e-11 Score=114.88 Aligned_cols=190 Identities=10% Similarity=0.084 Sum_probs=142.7
Q ss_pred CcEEEEEECCCcEEEEEcCCCeE----EEEeccCCCCCeEEEEEecCCCE-EEEEecC--CcEEEEECCCCceeEEEecC
Q 007234 86 SSLLVLGTGGGDVLALAVSAGQL----KWRLSDCHPGGVSAISFATHGSC-IYSAGAD--GMVCEIDPLTGSLLGKFRAS 158 (612)
Q Consensus 86 ~~~l~~gs~~g~I~vwd~~~~~~----~~~~~~~h~~~V~~l~~sp~~~~-l~s~s~d--g~v~iwd~~~~~~~~~~~~~ 158 (612)
+..|++|..+|.+.+|....+.. +..+ ....++..+.-++..+. +++|+.. ..+.+||+...+++..-+..
T Consensus 115 dg~Litc~~sG~l~~~~~k~~d~hss~l~~l--a~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNv 192 (412)
T KOG3881|consen 115 DGTLITCVSSGNLQVRHDKSGDLHSSKLIKL--ATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNV 192 (412)
T ss_pred CCEEEEEecCCcEEEEeccCCccccccceee--ecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCC
Confidence 66799999999999999985542 1122 12356777777775555 5558877 78999999887554443221
Q ss_pred C---------CCeeEEEECCC--CCEEEEeC--CeEEEEEcCCC-eeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeE
Q 007234 159 T---------KGISCMAVSSD--GKMLATAA--GQLKTFNCSDH-KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYI 224 (612)
Q Consensus 159 ~---------~~v~~l~~spd--g~~l~~~~--g~i~lwd~~~~-~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i 224 (612)
. -.++.+.|-+. ...++++. +.+++||.+.+ +++.+|.--..+++++...|++++++++. .-+.+
T Consensus 193 pnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn-~~g~l 271 (412)
T KOG3881|consen 193 PNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGN-TKGQL 271 (412)
T ss_pred CCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEec-ccchh
Confidence 1 24678899887 78888888 89999999876 57888888899999999999999999886 68999
Q ss_pred EEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCccee
Q 007234 225 ALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL 287 (612)
Q Consensus 225 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~ 287 (612)
..||++.++.. ...+..-...++.+... |.+.++++++.|..++|+|+++.+.+
T Consensus 272 ~~FD~r~~kl~----g~~~kg~tGsirsih~h-----p~~~~las~GLDRyvRIhD~ktrkll 325 (412)
T KOG3881|consen 272 AKFDLRGGKLL----GCGLKGITGSIRSIHCH-----PTHPVLASCGLDRYVRIHDIKTRKLL 325 (412)
T ss_pred heecccCceee----ccccCCccCCcceEEEc-----CCCceEEeeccceeEEEeecccchhh
Confidence 99999998754 12233333344444444 88899999999999999999886554
No 226
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.39 E-value=7.7e-11 Score=123.97 Aligned_cols=201 Identities=17% Similarity=0.155 Sum_probs=128.2
Q ss_pred cEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecC---CcEEEEECCCCceeEEEecCCCCeeEEEECCCCCE
Q 007234 97 DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD---GMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKM 173 (612)
Q Consensus 97 ~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~d---g~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~ 173 (612)
.|.++|..... ...+ ..+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++... +....+...+.+|+|||+.
T Consensus 177 ~L~~~D~dG~~-~~~l-~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~ 253 (427)
T PRK02889 177 QLQISDADGQN-AQSA-LSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRT 253 (427)
T ss_pred EEEEECCCCCC-ceEe-ccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCE
Confidence 47777774433 3233 2467789999999999998877643 359999999887643 3333455678999999998
Q ss_pred EEEe-C--C--eEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcC--CCccccceeeEeecCC
Q 007234 174 LATA-A--G--QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD--GVKKQSASCVLAMEHP 246 (612)
Q Consensus 174 l~~~-~--g--~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~--~~~~~~~~~~~~~~~~ 246 (612)
|+.. + | .|+++|+.++. ...+..+........|+|||+.++..+..++...+|.+. ++... . ....
T Consensus 254 la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~---~-lt~~-- 326 (427)
T PRK02889 254 LAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ---R-VTFT-- 326 (427)
T ss_pred EEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE---E-EecC--
Confidence 8753 3 4 46666666554 455665666667789999999888776445666677654 33321 1 1111
Q ss_pred ceeEEeEEecCCccCCCCcEEEEEecCC---cEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhcccc
Q 007234 247 AVFMDCRCIDNGGVDDAGLYVLAISETG---VCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKL 319 (612)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~t~s~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~ 319 (612)
........|+ |||++|+..+.++ .|.+||+.+++...-..... .....++|+++ .|+.+..
T Consensus 327 g~~~~~~~~S-----pDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~~~---~~~p~~spdg~----~l~~~~~ 390 (427)
T PRK02889 327 GSYNTSPRIS-----PDGKLLAYISRVGGAFKLYVQDLATGQVTALTDTTR---DESPSFAPNGR----YILYATQ 390 (427)
T ss_pred CCCcCceEEC-----CCCCEEEEEEccCCcEEEEEEECCCCCeEEccCCCC---ccCceECCCCC----EEEEEEe
Confidence 1111234565 9999998877654 69999998876432221111 11223778877 4555444
No 227
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.38 E-value=2.1e-09 Score=109.81 Aligned_cols=241 Identities=16% Similarity=0.211 Sum_probs=152.9
Q ss_pred EEEcCCCCEEEEEeC----CCcEEEEECCCC--cEEE--EeeccCCccccccccccccccccccceeEEEeeeccccccc
Q 007234 11 TSFSPALDYFAICSG----DARIKIWDTLKG--QVQT--EFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (612)
Q Consensus 11 ~~fspdg~~las~s~----dg~i~iwd~~~~--~~~~--~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (612)
++++|++++|.++.. +|.|..|++... ++.. +...... ....+. ..++
T Consensus 42 l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~------------------~p~~i~-~~~~----- 97 (345)
T PF10282_consen 42 LAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGS------------------SPCHIA-VDPD----- 97 (345)
T ss_dssp EEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSS------------------CEEEEE-ECTT-----
T ss_pred EEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCC------------------CcEEEE-EecC-----
Confidence 389999999988876 468988887653 3322 2211111 111112 1112
Q ss_pred ccCCcEEEEEE-CCCcEEEEEcCC-CeEEEE--ec----------cCCCCCeEEEEEecCCCEEEEEec-CCcEEEEECC
Q 007234 83 KLGSSLLVLGT-GGGDVLALAVSA-GQLKWR--LS----------DCHPGGVSAISFATHGSCIYSAGA-DGMVCEIDPL 147 (612)
Q Consensus 83 ~~~~~~l~~gs-~~g~I~vwd~~~-~~~~~~--~~----------~~h~~~V~~l~~sp~~~~l~s~s~-dg~v~iwd~~ 147 (612)
+++++++. .+|.|.++++.. |..... .. ........++.|+|+|++++++.. ...|.+|++.
T Consensus 98 ---g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~ 174 (345)
T PF10282_consen 98 ---GRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDID 174 (345)
T ss_dssp ---SSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-
T ss_pred ---CCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEe
Confidence 67777776 578899999987 433222 11 112355789999999999888753 4479999887
Q ss_pred CCc--e--eEEEec-CCCCeeEEEECCCCCEEEEeC---CeEEEEEcC--CCe--eEEEEecC------CCCEEEEEEee
Q 007234 148 TGS--L--LGKFRA-STKGISCMAVSSDGKMLATAA---GQLKTFNCS--DHK--KMQKFSGH------PGAVRFMTFSD 209 (612)
Q Consensus 148 ~~~--~--~~~~~~-~~~~v~~l~~spdg~~l~~~~---g~i~lwd~~--~~~--~~~~~~~h------~~~v~~l~~sp 209 (612)
... . ...+.. .......++|+|+|+++++.. +.|.++++. ++. .+..+... ......|.++|
T Consensus 175 ~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~isp 254 (345)
T PF10282_consen 175 DDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISP 254 (345)
T ss_dssp TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-T
T ss_pred CCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEec
Confidence 654 3 223333 334789999999999998876 799999988 443 23333211 12578899999
Q ss_pred CCcEEEEEEcCCCeEEEEEcCC--CccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEec-CCcEEEEEC--CCc
Q 007234 210 NGKYVLSSAVGERYIALWRTDG--VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-TGVCYIWYG--QNI 284 (612)
Q Consensus 210 ~~~~l~s~s~~d~~i~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~-dg~i~iwd~--~~~ 284 (612)
||++|+++......|.+|+++. +... .+............+.++ |+|++|++++. ++.|.+|+. ++|
T Consensus 255 dg~~lyvsnr~~~sI~vf~~d~~~g~l~---~~~~~~~~G~~Pr~~~~s-----~~g~~l~Va~~~s~~v~vf~~d~~tG 326 (345)
T PF10282_consen 255 DGRFLYVSNRGSNSISVFDLDPATGTLT---LVQTVPTGGKFPRHFAFS-----PDGRYLYVANQDSNTVSVFDIDPDTG 326 (345)
T ss_dssp TSSEEEEEECTTTEEEEEEECTTTTTEE---EEEEEEESSSSEEEEEE------TTSSEEEEEETTTTEEEEEEEETTTT
T ss_pred CCCEEEEEeccCCEEEEEEEecCCCceE---EEEEEeCCCCCccEEEEe-----CCCCEEEEEecCCCeEEEEEEeCCCC
Confidence 9999998877788999999943 3322 222333333335566676 99999999875 678999975 455
Q ss_pred ce
Q 007234 285 EE 286 (612)
Q Consensus 285 ~~ 286 (612)
..
T Consensus 327 ~l 328 (345)
T PF10282_consen 327 KL 328 (345)
T ss_dssp EE
T ss_pred cE
Confidence 54
No 228
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.38 E-value=4.1e-11 Score=114.50 Aligned_cols=163 Identities=15% Similarity=0.180 Sum_probs=127.3
Q ss_pred cCCCCCeEEEEEecCCCEEEEEecCCcEEEEECC------CCceeEEEec-CCCCeeEEEECCCCCEEEEeC--CeEEEE
Q 007234 114 DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL------TGSLLGKFRA-STKGISCMAVSSDGKMLATAA--GQLKTF 184 (612)
Q Consensus 114 ~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~------~~~~~~~~~~-~~~~v~~l~~spdg~~l~~~~--g~i~lw 184 (612)
.+|.+.|.++.|+.++++|++|+.|..+++|++. +.+++..... |...|.|++|...++.+++|. ++|.+.
T Consensus 53 ~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~H 132 (609)
T KOG4227|consen 53 REHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKH 132 (609)
T ss_pred hhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEee
Confidence 4799999999999999999999999999999975 3456665544 447899999999999999998 899999
Q ss_pred EcCCCeeEEEEecCC---CCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccC
Q 007234 185 NCSDHKKMQKFSGHP---GAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVD 261 (612)
Q Consensus 185 d~~~~~~~~~~~~h~---~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (612)
|+++.+.+..+. |. +.|..+..+|..+.|++.+ .++.|.+||.+..... ...+.....+..+.+ +.|.+
T Consensus 133 DiEt~qsi~V~~-~~~~~~~VY~m~~~P~DN~~~~~t-~~~~V~~~D~Rd~~~~-~~~~~~AN~~~~F~t-~~F~P---- 204 (609)
T KOG4227|consen 133 DIETKQSIYVAN-ENNNRGDVYHMDQHPTDNTLIVVT-RAKLVSFIDNRDRQNP-ISLVLPANSGKNFYT-AEFHP---- 204 (609)
T ss_pred ecccceeeeeec-ccCcccceeecccCCCCceEEEEe-cCceEEEEeccCCCCC-CceeeecCCCcccee-eeecC----
Confidence 999998887774 44 5899999999988888887 7999999999876522 112222233344433 44542
Q ss_pred CCCcEEEEEecCCcEEEEECCCc
Q 007234 262 DAGLYVLAISETGVCYIWYGQNI 284 (612)
Q Consensus 262 ~~~~~l~t~s~dg~i~iwd~~~~ 284 (612)
....+|++.+..|-+-+||.+..
T Consensus 205 ~~P~Li~~~~~~~G~~~~D~R~~ 227 (609)
T KOG4227|consen 205 ETPALILVNSETGGPNVFDRRMQ 227 (609)
T ss_pred CCceeEEeccccCCCCceeeccc
Confidence 34578888899999999997654
No 229
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.38 E-value=1.1e-10 Score=122.90 Aligned_cols=211 Identities=14% Similarity=0.094 Sum_probs=130.2
Q ss_pred CcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEECC---CcEEEEEc
Q 007234 27 ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGG---GDVLALAV 103 (612)
Q Consensus 27 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~---g~I~vwd~ 103 (612)
..|.+||.. |.....+..+...+....|+++ ++.|+..+.. ..|++||+
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPD---------------------------G~~la~~s~~~~~~~I~~~dl 227 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPD---------------------------GTKLAYVSFESKKPVVYVHDL 227 (427)
T ss_pred cEEEEECCC-CCCceEeccCCCCcccceEcCC---------------------------CCEEEEEEccCCCcEEEEEEC
Confidence 357777874 4444444444444444555544 6667666532 34999999
Q ss_pred CCCeEEEEeccCCCCCeEEEEEecCCCEEE-EEecCCcEEEE--ECCCCceeEEEecCCCCeeEEEECCCCCEEEEeC--
Q 007234 104 SAGQLKWRLSDCHPGGVSAISFATHGSCIY-SAGADGMVCEI--DPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-- 178 (612)
Q Consensus 104 ~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~-s~s~dg~v~iw--d~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~-- 178 (612)
.+++... + ....+.+.+..|+|||+.|+ +.+.+|...+| |+..+. ...+..+........|+|||+.++..+
T Consensus 228 ~~g~~~~-l-~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~ 304 (427)
T PRK02889 228 ATGRRRV-V-ANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDR 304 (427)
T ss_pred CCCCEEE-e-ecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecC
Confidence 9887642 2 22345567899999999876 56677776665 554444 444554555567789999999888655
Q ss_pred -Ce--EEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCC--eEEEEEcCCCccccceeeEeecCCceeEEeE
Q 007234 179 -GQ--LKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER--YIALWRTDGVKKQSASCVLAMEHPAVFMDCR 253 (612)
Q Consensus 179 -g~--i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (612)
|. |+.+++.+++. ..+..+........|+|||++++.++..++ .|.+||+.+++.. . +..... ....
T Consensus 305 ~g~~~Iy~~~~~~g~~-~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~---~---lt~~~~-~~~p 376 (427)
T PRK02889 305 GGAPQIYRMPASGGAA-QRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT---A---LTDTTR-DESP 376 (427)
T ss_pred CCCcEEEEEECCCCce-EEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE---E---ccCCCC-ccCc
Confidence 44 55555555543 222222333446789999999987763222 6999999887533 1 111111 1334
Q ss_pred EecCCccCCCCcEEEEEecCC---cEEEEEC
Q 007234 254 CIDNGGVDDAGLYVLAISETG---VCYIWYG 281 (612)
Q Consensus 254 ~~~~~~~~~~~~~l~t~s~dg---~i~iwd~ 281 (612)
.|+ |||++|+.++.++ .+.+.+.
T Consensus 377 ~~s-----pdg~~l~~~~~~~g~~~l~~~~~ 402 (427)
T PRK02889 377 SFA-----PNGRYILYATQQGGRSVLAAVSS 402 (427)
T ss_pred eEC-----CCCCEEEEEEecCCCEEEEEEEC
Confidence 565 9999988887644 3444455
No 230
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.38 E-value=1e-10 Score=123.60 Aligned_cols=195 Identities=15% Similarity=0.163 Sum_probs=131.1
Q ss_pred cccceeEEEEcCCCCEEEEEeC---CCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccc
Q 007234 4 SNIRDILTSFSPALDYFAICSG---DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (612)
Q Consensus 4 ~~V~~l~~~fspdg~~las~s~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~ 80 (612)
.++ .+.+|||||+.|+..+. +..|.+||+.+|+... +..+.+.+....|+++
T Consensus 202 ~~v--~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~-l~~~~g~~~~~~~SPD---------------------- 256 (435)
T PRK05137 202 SLV--LTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL-VGNFPGMTFAPRFSPD---------------------- 256 (435)
T ss_pred CCe--EeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE-eecCCCcccCcEECCC----------------------
Confidence 355 45599999999998764 4689999999887643 3333333333334433
Q ss_pred ccccCCcEE-EEEECCCc--EEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEec-CC--cEEEEECCCCceeEE
Q 007234 81 KRKLGSSLL-VLGTGGGD--VLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA-DG--MVCEIDPLTGSLLGK 154 (612)
Q Consensus 81 ~~~~~~~~l-~~gs~~g~--I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~-dg--~v~iwd~~~~~~~~~ 154 (612)
++.| ++.+.+|. |++||+.++... .+ ..+........|+|||+.++.++. +| .|++||+..++.. .
T Consensus 257 -----G~~la~~~~~~g~~~Iy~~d~~~~~~~-~L-t~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~ 328 (435)
T PRK05137 257 -----GRKVVMSLSQGGNTDIYTMDLRSGTTT-RL-TDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-R 328 (435)
T ss_pred -----CCEEEEEEecCCCceEEEEECCCCceE-Ec-cCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-E
Confidence 5545 45566665 888899888764 34 345566778999999998887763 33 6888898766543 3
Q ss_pred EecCCCCeeEEEECCCCCEEEEeC-----CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCC-----CeE
Q 007234 155 FRASTKGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE-----RYI 224 (612)
Q Consensus 155 ~~~~~~~v~~l~~spdg~~l~~~~-----g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d-----~~i 224 (612)
+..+...+....|+|||+.++... ..|.+||+.++.. +.+. ....+..+.|+|||+.++..+... ..+
T Consensus 329 lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L 406 (435)
T PRK05137 329 ISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKL 406 (435)
T ss_pred eecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceE
Confidence 433445567789999999998764 2688899866543 3333 223467789999999887765322 256
Q ss_pred EEEEcCCCc
Q 007234 225 ALWRTDGVK 233 (612)
Q Consensus 225 ~vwd~~~~~ 233 (612)
.++|+..+.
T Consensus 407 ~~~dl~g~~ 415 (435)
T PRK05137 407 YTVDLTGRN 415 (435)
T ss_pred EEEECCCCc
Confidence 777776554
No 231
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.38 E-value=5.2e-11 Score=125.72 Aligned_cols=176 Identities=11% Similarity=0.077 Sum_probs=121.5
Q ss_pred cEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecC---CcEEEEECCCCceeEEEecCCCCeeEEEECCCCCE
Q 007234 97 DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD---GMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKM 173 (612)
Q Consensus 97 ~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~d---g~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~ 173 (612)
.|.+||...+... .+ ..|...+.+.+|+|||+.|+.++.+ ..|++||+.+++... +....+...+.+|+|||+.
T Consensus 185 ~l~i~D~~g~~~~-~l-t~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~ 261 (433)
T PRK04922 185 ALQVADSDGYNPQ-TI-LRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRR 261 (433)
T ss_pred EEEEECCCCCCce-Ee-ecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCE
Confidence 4889998655443 34 2466789999999999998887643 469999998876543 3333445567899999998
Q ss_pred EEEe-C--C--eEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCe--EEEEEcCCCccccceeeEeecCC
Q 007234 174 LATA-A--G--QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERY--IALWRTDGVKKQSASCVLAMEHP 246 (612)
Q Consensus 174 l~~~-~--g--~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~--i~vwd~~~~~~~~~~~~~~~~~~ 246 (612)
++.. + | .|++||+.+++. ..+..+.......+|+|||++++.++..++. |.++++.+++.. . ... ..
T Consensus 262 l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~---~-lt~-~g 335 (433)
T PRK04922 262 LALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE---R-LTF-QG 335 (433)
T ss_pred EEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeE---E-eec-CC
Confidence 7643 2 3 799999988864 4556666666788999999998887644444 666666665432 1 111 11
Q ss_pred ceeEEeEEecCCccCCCCcEEEEEecCC---cEEEEECCCccee
Q 007234 247 AVFMDCRCIDNGGVDDAGLYVLAISETG---VCYIWYGQNIEEL 287 (612)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~t~s~dg---~i~iwd~~~~~~~ 287 (612)
.......|+ |||++|+..+.++ .|.+||+.+++..
T Consensus 336 -~~~~~~~~S-----pDG~~Ia~~~~~~~~~~I~v~d~~~g~~~ 373 (433)
T PRK04922 336 -NYNARASVS-----PDGKKIAMVHGSGGQYRIAVMDLSTGSVR 373 (433)
T ss_pred -CCccCEEEC-----CCCCEEEEEECCCCceeEEEEECCCCCeE
Confidence 122235566 9999998876543 6999999877643
No 232
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.38 E-value=6.7e-11 Score=109.69 Aligned_cols=152 Identities=16% Similarity=0.238 Sum_probs=106.7
Q ss_pred EEEEEecCCCEEEEEec---C-------CcEEEEECC-CCceeEEEec-CCCCeeEEEECCCCCEEEEeC----CeEEEE
Q 007234 121 SAISFATHGSCIYSAGA---D-------GMVCEIDPL-TGSLLGKFRA-STKGISCMAVSSDGKMLATAA----GQLKTF 184 (612)
Q Consensus 121 ~~l~~sp~~~~l~s~s~---d-------g~v~iwd~~-~~~~~~~~~~-~~~~v~~l~~spdg~~l~~~~----g~i~lw 184 (612)
..+.|+|+|.+|+.-.. | +...+|.++ .+.....+.- ..++|.+++|+|+|+.+++.. +.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 46778888887554322 1 234444442 2334444443 344799999999999877653 589999
Q ss_pred EcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcC--CCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCC
Q 007234 185 NCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVG--ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDD 262 (612)
Q Consensus 185 d~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~--d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (612)
|++ ++.+..+. ...++.+.|+|+|+++++++.. .|.+.+||.++.+. +....+.. ...+.|+ |
T Consensus 89 d~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~-----i~~~~~~~--~t~~~Ws-----P 153 (194)
T PF08662_consen 89 DVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKK-----ISTFEHSD--ATDVEWS-----P 153 (194)
T ss_pred cCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEE-----eeccccCc--EEEEEEc-----C
Confidence 997 66666664 5678899999999999998743 46799999996653 34444433 4567787 9
Q ss_pred CCcEEEEEec------CCcEEEEECCCcceec
Q 007234 263 AGLYVLAISE------TGVCYIWYGQNIEELR 288 (612)
Q Consensus 263 ~~~~l~t~s~------dg~i~iwd~~~~~~~~ 288 (612)
||++|++++. |+.++||+.. |+.+.
T Consensus 154 dGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~ 184 (194)
T PF08662_consen 154 DGRYLATATTSPRLRVDNGFKIWSFQ-GRLLY 184 (194)
T ss_pred CCCEEEEEEeccceeccccEEEEEec-CeEeE
Confidence 9999999864 7889999974 55554
No 233
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.35 E-value=9.7e-12 Score=123.65 Aligned_cols=207 Identities=18% Similarity=0.340 Sum_probs=146.0
Q ss_pred CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (612)
Q Consensus 2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (612)
|++=|++| .|+.||.+|++||.|-++.|||.-..+.++.+. .||.. .+.+..|.|...
T Consensus 49 H~GCVN~L--eWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~----------------TgHta-NIFsvKFvP~tn--- 106 (758)
T KOG1310|consen 49 HTGCVNCL--EWNADGELLASGSDDTRLIVWDPFEYKLLHSIS----------------TGHTA-NIFSVKFVPYTN--- 106 (758)
T ss_pred ccceecce--eecCCCCEEeecCCcceEEeecchhcceeeeee----------------ccccc-ceeEEeeeccCC---
Confidence 45668766 999999999999999999999998888887764 24433 344566666543
Q ss_pred cccCCcEEEEEECCCcEEEEEcCCC---------eEEEEeccCCCCCeEEEEEecCC-CEEEEEecCCcEEEEECCCCce
Q 007234 82 RKLGSSLLVLGTGGGDVLALAVSAG---------QLKWRLSDCHPGGVSAISFATHG-SCIYSAGADGMVCEIDPLTGSL 151 (612)
Q Consensus 82 ~~~~~~~l~~gs~~g~I~vwd~~~~---------~~~~~~~~~h~~~V~~l~~sp~~-~~l~s~s~dg~v~iwd~~~~~~ 151 (612)
+.++++|..|..|++||+... +........|...|-.++..|++ ..+++|+.||+|+-+|++....
T Consensus 107 ----nriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~ 182 (758)
T KOG1310|consen 107 ----NRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHV 182 (758)
T ss_pred ----CeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCcc
Confidence 678999999999999999851 22223345789999999999988 6799999999999999986321
Q ss_pred -------eEE---EecCCCCeeEEEECCCCC-EEEEeC--CeEEEEEcCC--------C----------eeEEEE-ecCC
Q 007234 152 -------LGK---FRASTKGISCMAVSSDGK-MLATAA--GQLKTFNCSD--------H----------KKMQKF-SGHP 199 (612)
Q Consensus 152 -------~~~---~~~~~~~v~~l~~spdg~-~l~~~~--g~i~lwd~~~--------~----------~~~~~~-~~h~ 199 (612)
... +...--...|+.++|... +|++|+ --.++||.+. + .+++.| ++|-
T Consensus 183 c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hl 262 (758)
T KOG1310|consen 183 CNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHL 262 (758)
T ss_pred CCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccc
Confidence 111 111123567999999654 566666 3688999431 1 123323 2332
Q ss_pred --------CC---EEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccc
Q 007234 200 --------GA---VRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ 235 (612)
Q Consensus 200 --------~~---v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~ 235 (612)
.. ++-+.|+|+|.-|+..- ....|+++|+..++..
T Consensus 263 kn~~gn~~~~~~~~t~vtfnpNGtElLvs~-~gEhVYlfdvn~~~~~ 308 (758)
T KOG1310|consen 263 KNSQGNLDRYITCCTYVTFNPNGTELLVSW-GGEHVYLFDVNEDKSP 308 (758)
T ss_pred cCcccccccceeeeEEEEECCCCcEEEEee-CCeEEEEEeecCCCCc
Confidence 11 45578999998777654 4568999999887644
No 234
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.34 E-value=1.1e-11 Score=123.29 Aligned_cols=196 Identities=13% Similarity=0.218 Sum_probs=142.8
Q ss_pred CcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEec--CCCEEEEEecCCcEEEEECCC----------CceeE
Q 007234 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT--HGSCIYSAGADGMVCEIDPLT----------GSLLG 153 (612)
Q Consensus 86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp--~~~~l~s~s~dg~v~iwd~~~----------~~~~~ 153 (612)
|.+|++|+.|-.+.|||+-..+.+..+..+|...|.++.|-| +.+.+++|..|..|+++|+.. .....
T Consensus 62 G~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~ 141 (758)
T KOG1310|consen 62 GELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTR 141 (758)
T ss_pred CCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhh
Confidence 899999999999999999999999899899999999999998 556799999999999999974 23455
Q ss_pred EEecCCCCeeEEEECCCC-CEEEEeC--CeEEEEEcCCCeeEE----------EEecCCCCEEEEEEeeCCc-EEEEEEc
Q 007234 154 KFRASTKGISCMAVSSDG-KMLATAA--GQLKTFNCSDHKKMQ----------KFSGHPGAVRFMTFSDNGK-YVLSSAV 219 (612)
Q Consensus 154 ~~~~~~~~v~~l~~spdg-~~l~~~~--g~i~lwd~~~~~~~~----------~~~~h~~~v~~l~~sp~~~-~l~s~s~ 219 (612)
.+..|...|..|+..|++ ..+.+++ |+|+-+|++...... .+.+.--...++.++|... +|++++
T Consensus 142 ~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGg- 220 (758)
T KOG1310|consen 142 CWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGG- 220 (758)
T ss_pred hhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecC-
Confidence 567788899999999998 6667777 999999998642211 1111123456889999766 556665
Q ss_pred CCCeEEEEEcCCCccc--------c-----ceeeE--eec----------CCceeEEeEEecCCccCCCCcEEEEEecCC
Q 007234 220 GERYIALWRTDGVKKQ--------S-----ASCVL--AME----------HPAVFMDCRCIDNGGVDDAGLYVLAISETG 274 (612)
Q Consensus 220 ~d~~i~vwd~~~~~~~--------~-----~~~~~--~~~----------~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg 274 (612)
.|-..++||.+...+. . -.|+. ... +-....+.+.|+ |+|.-|++.-..-
T Consensus 221 sdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfn-----pNGtElLvs~~gE 295 (758)
T KOG1310|consen 221 SDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFN-----PNGTELLVSWGGE 295 (758)
T ss_pred CCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEEC-----CCCcEEEEeeCCe
Confidence 6899999994321110 0 00111 111 112235556676 9998877776666
Q ss_pred cEEEEECCCccee
Q 007234 275 VCYIWYGQNIEEL 287 (612)
Q Consensus 275 ~i~iwd~~~~~~~ 287 (612)
.|++||+..++..
T Consensus 296 hVYlfdvn~~~~~ 308 (758)
T KOG1310|consen 296 HVYLFDVNEDKSP 308 (758)
T ss_pred EEEEEeecCCCCc
Confidence 8999998877654
No 235
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.34 E-value=5.9e-11 Score=111.91 Aligned_cols=251 Identities=14% Similarity=0.149 Sum_probs=161.9
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCc-----EEEEeeccCCccccccccccccccccccceeEEEeeeccccccccc
Q 007234 10 LTSFSPALDYFAICSGDARIKIWDTLKGQ-----VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (612)
Q Consensus 10 ~~~fspdg~~las~s~dg~i~iwd~~~~~-----~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (612)
++.|+.+|++||+|..+|+|.++.-.... ...+++.|.....- - ..-.....+..+.|.+...
T Consensus 30 ~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDY---L---kSleieEKinkIrw~~~~n------ 97 (433)
T KOG1354|consen 30 AVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDY---L---KSLEIEEKINKIRWLDDGN------ 97 (433)
T ss_pred eEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccch---h---hhhhhhhhhhhceecCCCC------
Confidence 45999999999999999999999543222 33444444332110 0 0011123455677776643
Q ss_pred CCcEEEEEECCCcEEEEEcCCCe-----------------------------------EEEEeccCCCCCeEEEEEecCC
Q 007234 85 GSSLLVLGTGGGDVLALAVSAGQ-----------------------------------LKWRLSDCHPGGVSAISFATHG 129 (612)
Q Consensus 85 ~~~~l~~gs~~g~I~vwd~~~~~-----------------------------------~~~~~~~~h~~~V~~l~~sp~~ 129 (612)
...+++.+.+.+|++|.+.... +.+.+..+|+--|.+++++.|+
T Consensus 98 -~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~ 176 (433)
T KOG1354|consen 98 -LAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDK 176 (433)
T ss_pred -ccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCcc
Confidence 6778899999999999875321 1122335788889999999999
Q ss_pred CEEEEEecCCcEEEEECCCCce-e--EEEecCC-----CCeeEEEECCCCC-EEE-EeC-CeEEEEEcCCCeeEE----E
Q 007234 130 SCIYSAGADGMVCEIDPLTGSL-L--GKFRAST-----KGISCMAVSSDGK-MLA-TAA-GQLKTFNCSDHKKMQ----K 194 (612)
Q Consensus 130 ~~l~s~s~dg~v~iwd~~~~~~-~--~~~~~~~-----~~v~~l~~spdg~-~l~-~~~-g~i~lwd~~~~~~~~----~ 194 (612)
..++++ .|-.|.+|++.--.. . ..++.+. .-|++..|+|... .++ +.+ |+|++.|++...+.. .
T Consensus 177 Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKl 255 (433)
T KOG1354|consen 177 ETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKL 255 (433)
T ss_pred ceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhh
Confidence 999988 578899999864322 2 2223222 3588899999543 333 344 999999998543211 1
Q ss_pred E------------ecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCC-------------cee
Q 007234 195 F------------SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP-------------AVF 249 (612)
Q Consensus 195 ~------------~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~-------------~~~ 249 (612)
+ .+--..|..+.|+++|+|+++-. =-+|++||+.-.... +.+..-+ ..+
T Consensus 256 fEepedp~~rsffseiIsSISDvKFs~sGryilsRD--yltvk~wD~nme~~p----v~t~~vh~~lr~kLc~lYEnD~I 329 (433)
T KOG1354|consen 256 FEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD--YLTVKLWDLNMEAKP----VETYPVHEYLRSKLCSLYENDAI 329 (433)
T ss_pred hccccCCcchhhHHHHhhhhhceEEccCCcEEEEec--cceeEEEeccccCCc----ceEEeehHhHHHHHHHHhhccch
Confidence 1 11124578899999999999753 368999999654322 1111111 111
Q ss_pred E--EeEEecCCccCCCCcEEEEEecCCcEEEEECCCcc
Q 007234 250 M--DCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE 285 (612)
Q Consensus 250 ~--~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~ 285 (612)
. --++++ .++.++++|+..+..++|++..|.
T Consensus 330 fdKFec~~s-----g~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 330 FDKFECSWS-----GNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred hheeEEEEc-----CCcceEecccccceEEEecCCCCc
Confidence 0 112333 778899999999999999966554
No 236
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.32 E-value=1.5e-10 Score=125.43 Aligned_cols=193 Identities=11% Similarity=0.067 Sum_probs=128.0
Q ss_pred CcEEEEEECCCcEEEEEcCCC-------eEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCC-------ce
Q 007234 86 SSLLVLGTGGGDVLALAVSAG-------QLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG-------SL 151 (612)
Q Consensus 86 ~~~l~~gs~~g~I~vwd~~~~-------~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~-------~~ 151 (612)
+.++++|+.||+|++||...- +...++ ......+.++.+.+.+..++.++.||.|++.++... .+
T Consensus 1061 ~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~lty-s~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~ 1139 (1431)
T KOG1240|consen 1061 TSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTY-SPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQ 1139 (1431)
T ss_pred CceEEEecCCceEEEeeehhhhcCcceeeeeEEE-eccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeee
Confidence 589999999999999998641 111122 124578999999999999999999999999998752 12
Q ss_pred eEEEecCCC-C-eeEEEECC-CCC-EEEEeC--CeEEEEEcCCCeeEEEE--ecCCCCEEEEEEeeCCcEEEEEEcCCCe
Q 007234 152 LGKFRASTK-G-ISCMAVSS-DGK-MLATAA--GQLKTFNCSDHKKMQKF--SGHPGAVRFMTFSDNGKYVLSSAVGERY 223 (612)
Q Consensus 152 ~~~~~~~~~-~-v~~l~~sp-dg~-~l~~~~--g~i~lwd~~~~~~~~~~--~~h~~~v~~l~~sp~~~~l~s~s~~d~~ 223 (612)
.+....+.. . |..-++.. ++. .++.+. +.|..||+++.....++ ....+.|++++.+|.+.+++.|. ..|.
T Consensus 1140 ~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGt-s~G~ 1218 (1431)
T KOG1240|consen 1140 VRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGT-SRGQ 1218 (1431)
T ss_pred eecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEec-CCce
Confidence 222222222 2 33333433 233 444444 89999999887654433 34457899999999999999987 6899
Q ss_pred EEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEe--cCCcEEEEECCCcce
Q 007234 224 IALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS--ETGVCYIWYGQNIEE 286 (612)
Q Consensus 224 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s--~dg~i~iwd~~~~~~ 286 (612)
+.+||++.+... +....++...+. -++..+. .+.....++++ ..+.|.+|++.+|..
T Consensus 1219 l~lWDLRF~~~i---~sw~~P~~~~i~-~v~~~~~--~~~~S~~vs~~~~~~nevs~wn~~~g~~ 1277 (1431)
T KOG1240|consen 1219 LVLWDLRFRVPI---LSWEHPARAPIR-HVWLCPT--YPQESVSVSAGSSSNNEVSTWNMETGLR 1277 (1431)
T ss_pred EEEEEeecCcee---ecccCcccCCcc-eEEeecc--CCCCceEEEecccCCCceeeeecccCcc
Confidence 999999988754 233333333222 2222211 14445555554 467899999998844
No 237
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.30 E-value=6.8e-09 Score=106.10 Aligned_cols=277 Identities=14% Similarity=0.168 Sum_probs=165.1
Q ss_pred EEEEECC----CcEEEEEc--CCCeEEEEeccCCCCCeEEEEEecCCCEEEEEec----CCcEEEEECCCC--c--eeEE
Q 007234 89 LVLGTGG----GDVLALAV--SAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA----DGMVCEIDPLTG--S--LLGK 154 (612)
Q Consensus 89 l~~gs~~----g~I~vwd~--~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~----dg~v~iwd~~~~--~--~~~~ 154 (612)
+++|+.. +.|.+|++ .+++....-..........++++|++++|+++.. ++.|..|++... + .+..
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~ 81 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS 81 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence 4556655 56888887 5555432211123456678999999999999876 568988887653 3 3334
Q ss_pred EecCCCCeeEEEECCCCCEEEEeC---CeEEEEEcCC-CeeEEE---Ee--c--------CCCCEEEEEEeeCCcEEEEE
Q 007234 155 FRASTKGISCMAVSSDGKMLATAA---GQLKTFNCSD-HKKMQK---FS--G--------HPGAVRFMTFSDNGKYVLSS 217 (612)
Q Consensus 155 ~~~~~~~v~~l~~spdg~~l~~~~---g~i~lwd~~~-~~~~~~---~~--~--------h~~~v~~l~~sp~~~~l~s~ 217 (612)
..........++++|++++|+++. |.|.++++.. +..... +. + ......++.|+|+|++++++
T Consensus 82 ~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~ 161 (345)
T PF10282_consen 82 VPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVP 161 (345)
T ss_dssp EEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEE
T ss_pred eccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEE
Confidence 443445667899999999999986 8999999987 433222 21 1 12457889999999999988
Q ss_pred EcCCCeEEEEEcCCCcc-ccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEec-CCcEEEEECC--Ccce--ecccC
Q 007234 218 AVGERYIALWRTDGVKK-QSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-TGVCYIWYGQ--NIEE--LRNTK 291 (612)
Q Consensus 218 s~~d~~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~-dg~i~iwd~~--~~~~--~~~~~ 291 (612)
......|.+|++..... ......... ....-.+.+.|+ |+++++.+.++ ++.|.+|++. ++.. +....
T Consensus 162 dlG~D~v~~~~~~~~~~~l~~~~~~~~-~~G~GPRh~~f~-----pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~ 235 (345)
T PF10282_consen 162 DLGADRVYVYDIDDDTGKLTPVDSIKV-PPGSGPRHLAFS-----PDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTIS 235 (345)
T ss_dssp ETTTTEEEEEEE-TTS-TEEEEEEEEC-STTSSEEEEEE------TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEE
T ss_pred ecCCCEEEEEEEeCCCceEEEeecccc-ccCCCCcEEEEc-----CCcCEEEEecCCCCcEEEEeecccCCceeEEEEee
Confidence 76677899999987652 111111222 333445666777 99999888776 7789999887 3321 11111
Q ss_pred Cc-----eeEeecccccCCCCcccchhhhccccc-ceecCCCceEEEEeCC-ccCceEEEeeccCCCeEEEEecCCCceE
Q 007234 292 AT-----KILSSSEDVNSKSQKSATAAIFAAKLQ-DIVKPASVHTFVAYGL-LLKPSFQKILVNSGEDINLNCSQDGVLL 364 (612)
Q Consensus 292 ~~-----~~~~~~~~~~s~~~~~~~~~i~~~~~d-~~~~~~~~~~~~~~g~-~~~~~~~~~~~h~~~v~~l~~S~dg~~l 364 (612)
.. .........++|+++ .+.++... +.+. ++-.+.. -.-...+.+......-..++++|||++|
T Consensus 236 ~~~~~~~~~~~~~~i~ispdg~----~lyvsnr~~~sI~-----vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l 306 (345)
T PF10282_consen 236 TLPEGFTGENAPAEIAISPDGR----FLYVSNRGSNSIS-----VFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYL 306 (345)
T ss_dssp SCETTSCSSSSEEEEEE-TTSS----EEEEEECTTTEEE-----EEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEE
T ss_pred eccccccccCCceeEEEecCCC----EEEEEeccCCEEE-----EEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEE
Confidence 00 000122223566666 44444332 1111 1111111 0112222333333347899999999999
Q ss_pred eccccceeeecceeee
Q 007234 365 PMSQSLLKSKRGRYVQ 380 (612)
Q Consensus 365 ~~s~s~d~~~~~w~~~ 380 (612)
.++...++.+.++++.
T Consensus 307 ~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 307 YVANQDSNTVSVFDID 322 (345)
T ss_dssp EEEETTTTEEEEEEEE
T ss_pred EEEecCCCeEEEEEEe
Confidence 7777778888888774
No 238
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.28 E-value=1.4e-11 Score=121.08 Aligned_cols=275 Identities=12% Similarity=0.091 Sum_probs=188.0
Q ss_pred CcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEec--CCCEEEEEecCCcEEEEECC-CCce--eEEEecCCC
Q 007234 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT--HGSCIYSAGADGMVCEIDPL-TGSL--LGKFRASTK 160 (612)
Q Consensus 86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp--~~~~l~s~s~dg~v~iwd~~-~~~~--~~~~~~~~~ 160 (612)
+..+++|+.|-.|.+||...+.....+..+|...|..-.|-| +.+.+++++.||.|++=.+. ++.+ ...+..|.+
T Consensus 154 Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g 233 (559)
T KOG1334|consen 154 GDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEG 233 (559)
T ss_pred CceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecccccC
Confidence 899999999999999999999999899999999999989988 34569999999999987654 3333 234556889
Q ss_pred CeeEEEECCCCCE-EEEeC--CeEEEEEcCCCeeEEEE---ecCCC---CEEEEEEeeCCc-EEEEEEcCCCeEEEEEcC
Q 007234 161 GISCMAVSSDGKM-LATAA--GQLKTFNCSDHKKMQKF---SGHPG---AVRFMTFSDNGK-YVLSSAVGERYIALWRTD 230 (612)
Q Consensus 161 ~v~~l~~spdg~~-l~~~~--g~i~lwd~~~~~~~~~~---~~h~~---~v~~l~~sp~~~-~l~s~s~~d~~i~vwd~~ 230 (612)
+|..++.-|+..+ +.+++ +.+.-+|++++.+-..+ ..+.. ....++..|... .+++++ .|..+++||.+
T Consensus 234 ~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG-~dqf~RvYD~R 312 (559)
T KOG1334|consen 234 PVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGG-SDQFARVYDQR 312 (559)
T ss_pred ccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCC-hhhhhhhhccc
Confidence 9999999997654 44444 78888899887553333 22333 456788888776 566666 69999999987
Q ss_pred CCcccc------ceee-EeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcce------------ecc-c
Q 007234 231 GVKKQS------ASCV-LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE------------LRN-T 290 (612)
Q Consensus 231 ~~~~~~------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~------------~~~-~ 290 (612)
.-.... ..+- ........-+.++.++ .++.-+.++-.|-.|++|.-.-+.- ++. .
T Consensus 313 ~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ys-----h~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vY 387 (559)
T KOG1334|consen 313 RIDKEENNGVLDKFCPHHLVEDDPVNITGLVYS-----HDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVY 387 (559)
T ss_pred chhhccccchhhhcCCccccccCcccceeEEec-----CCccceeeeecccceEEeccccccCCCCCCCcchhhccchhh
Confidence 543221 0000 0011234456777786 6777777777788899995322211 111 1
Q ss_pred CCc--eeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccc
Q 007234 291 KAT--KILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQ 368 (612)
Q Consensus 291 ~~~--~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~ 368 (612)
+++ ...+.+...|.|... ++++|+..|.+.+|+ ......++-+.+...-|.||--.|--..| +|.
T Consensus 388 KGHrN~~TVKgVNFfGPrsE----yVvSGSDCGhIFiW~--------K~t~eii~~MegDr~VVNCLEpHP~~PvL-AsS 454 (559)
T KOG1334|consen 388 KGHRNSRTVKGVNFFGPRSE----YVVSGSDCGHIFIWD--------KKTGEIIRFMEGDRHVVNCLEPHPHLPVL-ASS 454 (559)
T ss_pred cccccccccceeeeccCccc----eEEecCccceEEEEe--------cchhHHHHHhhcccceEeccCCCCCCchh-hcc
Confidence 222 123455556777766 899999988777766 11111122233333367777777777888 999
Q ss_pred cceeeecceee
Q 007234 369 SLLKSKRGRYV 379 (612)
Q Consensus 369 s~d~~~~~w~~ 379 (612)
+-|..+|+|.-
T Consensus 455 Gid~DVKIWTP 465 (559)
T KOG1334|consen 455 GIDHDVKIWTP 465 (559)
T ss_pred CCccceeeecC
Confidence 99999999964
No 239
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.26 E-value=3e-09 Score=112.26 Aligned_cols=178 Identities=17% Similarity=0.178 Sum_probs=119.1
Q ss_pred CcEEEEEECC---CcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEE-EecCC--cEEEEECCCCceeEEEecCC
Q 007234 86 SSLLVLGTGG---GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYS-AGADG--MVCEIDPLTGSLLGKFRAST 159 (612)
Q Consensus 86 ~~~l~~gs~~---g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s-~s~dg--~v~iwd~~~~~~~~~~~~~~ 159 (612)
++.++.++.. ..|++||+.+++.... ..+...+.+++|+|||+.|+. .+.++ .|++||+.+++.. .+..+.
T Consensus 201 g~~la~~~~~~~~~~i~v~d~~~g~~~~~--~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~ 277 (417)
T TIGR02800 201 GQKLAYVSFESGKPEIYVQDLATGQREKV--ASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGP 277 (417)
T ss_pred CCEEEEEEcCCCCcEEEEEECCCCCEEEe--ecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE-ECCCCC
Confidence 6667766544 3599999998865422 235566778999999987764 44444 5899998877543 333344
Q ss_pred CCeeEEEECCCCCEEEEeC-----CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCC---eEEEEEcCC
Q 007234 160 KGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER---YIALWRTDG 231 (612)
Q Consensus 160 ~~v~~l~~spdg~~l~~~~-----g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~---~i~vwd~~~ 231 (612)
.......|+|||+.|+..+ ..|+++|+.+++. ..+..+...+..+.|+|+|++++.++ .++ .|.+||+.+
T Consensus 278 ~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~i~~~~-~~~~~~~i~~~d~~~ 355 (417)
T TIGR02800 278 GIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNASPSWSPDGDLIAFVH-REGGGFNIAVMDLDG 355 (417)
T ss_pred CCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCCccCeEECCCCCEEEEEE-ccCCceEEEEEeCCC
Confidence 4456779999999887654 2788999887764 34444556677889999999998876 454 788889877
Q ss_pred CccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCC---cEEEEE
Q 007234 232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG---VCYIWY 280 (612)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg---~i~iwd 280 (612)
+... . +..... .....|+ |+|++|+..+.++ .+.+.+
T Consensus 356 ~~~~---~---l~~~~~-~~~p~~s-----pdg~~l~~~~~~~~~~~l~~~~ 395 (417)
T TIGR02800 356 GGER---V---LTDTGL-DESPSFA-----PNGRMILYATTRGGRGVLGLVS 395 (417)
T ss_pred CCeE---E---ccCCCC-CCCceEC-----CCCCEEEEEEeCCCcEEEEEEE
Confidence 5422 1 111111 1223455 9999888887754 344444
No 240
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.24 E-value=5.1e-09 Score=109.75 Aligned_cols=184 Identities=11% Similarity=0.058 Sum_probs=115.2
Q ss_pred EEEECCCc--EEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEec-----CCcEEEEECCCC---ceeEEEecCC
Q 007234 90 VLGTGGGD--VLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA-----DGMVCEIDPLTG---SLLGKFRAST 159 (612)
Q Consensus 90 ~~gs~~g~--I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~-----dg~v~iwd~~~~---~~~~~~~~~~ 159 (612)
++...+|. |.+.++.+++.. .+. ...+.....+|+|||+.|+..+. |..+..|++..+ +.........
T Consensus 203 y~S~~~g~~~I~~~~l~~g~~~-~lt-~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~ 280 (428)
T PRK01029 203 YVSYKLGVPKIFLGSLENPAGK-KIL-ALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAF 280 (428)
T ss_pred EEEccCCCceEEEEECCCCCce-Eee-cCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCC
Confidence 34545544 888899887654 222 23455667899999998876553 223444777653 3333333222
Q ss_pred CCeeEEEECCCCCEEEEeC---C--eEEEEEcCC-CeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCC--CeEEEEEcCC
Q 007234 160 KGISCMAVSSDGKMLATAA---G--QLKTFNCSD-HKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE--RYIALWRTDG 231 (612)
Q Consensus 160 ~~v~~l~~spdg~~l~~~~---g--~i~lwd~~~-~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d--~~i~vwd~~~ 231 (612)
......+|+|||+.|+..+ | .|+++++.. +.....+..+...+....|+|||+.|+..+..+ ..|.+||+.+
T Consensus 281 ~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~ 360 (428)
T PRK01029 281 GTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLAT 360 (428)
T ss_pred CCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCC
Confidence 3446789999999887654 4 456666542 233455555556677899999999988776333 3689999988
Q ss_pred CccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEec---CCcEEEEECCCcce
Q 007234 232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE---TGVCYIWYGQNIEE 286 (612)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~---dg~i~iwd~~~~~~ 286 (612)
++.. .+...........|+ |||+.|+..+. .+.|.+||+.+++.
T Consensus 361 g~~~------~Lt~~~~~~~~p~wS-----pDG~~L~f~~~~~g~~~L~~vdl~~g~~ 407 (428)
T PRK01029 361 GRDY------QLTTSPENKESPSWA-----IDSLHLVYSAGNSNESELYLISLITKKT 407 (428)
T ss_pred CCeE------EccCCCCCccceEEC-----CCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 7643 111111122334565 99998876543 34688888877654
No 241
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.21 E-value=8.9e-11 Score=110.07 Aligned_cols=218 Identities=15% Similarity=0.092 Sum_probs=153.3
Q ss_pred EEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEEEECCCCCEEEEeC---CeEEEEEcCCCeeEEEEecC
Q 007234 122 AISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGH 198 (612)
Q Consensus 122 ~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~---g~i~lwd~~~~~~~~~~~~h 198 (612)
-++|||+|+++++++.- .+.+-|..+-+..+.|.. -..|..+.|..|..+++++. +.|.+|++...+-..++...
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg 90 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEG 90 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccC
Confidence 46799999999999754 788888877766555443 34677899999998888776 79999999999888888888
Q ss_pred CCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCC---c
Q 007234 199 PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG---V 275 (612)
Q Consensus 199 ~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg---~ 275 (612)
..++.+++|||||+.++..+.-|-.|.+|.+.+.+. .-+.++...+..++|. |||++.+..+.-. .
T Consensus 91 ~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~------~~~~~pK~~~kg~~f~-----~dg~f~ai~sRrDCkdy 159 (447)
T KOG4497|consen 91 QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKG------YLLPHPKTNVKGYAFH-----PDGQFCAILSRRDCKDY 159 (447)
T ss_pred CCcceeeeECCCcceEeeeecceeEEEEEEecccee------EEecccccCceeEEEC-----CCCceeeeeecccHHHH
Confidence 889999999999988887776788999999998763 3456777667888887 9999988877632 2
Q ss_pred EEEEECCCcceecccCCceeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCcc-CceEEEeeccC-CCeE
Q 007234 276 CYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLL-KPSFQKILVNS-GEDI 353 (612)
Q Consensus 276 i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~-~~~~~~~~~h~-~~v~ 353 (612)
+.+...+....++.++...+..+... ++|++. .+..-.+.+ +.+ ...|. -.+.
T Consensus 160 v~i~~c~~W~ll~~f~~dT~Dltgie-WsPdg~---------------------~laVwd~~Leykv---~aYe~~lG~k 214 (447)
T KOG4497|consen 160 VQISSCKAWILLKEFKLDTIDLTGIE-WSPDGN---------------------WLAVWDNVLEYKV---YAYERGLGLK 214 (447)
T ss_pred HHHHhhHHHHHHHhcCCCcccccCce-ECCCCc---------------------EEEEecchhhhee---eeeeecccee
Confidence 23332333344444443333333222 455444 222222221 111 11222 2577
Q ss_pred EEEecCCCceEeccccceeeeccee
Q 007234 354 NLNCSQDGVLLPMSQSLLKSKRGRY 378 (612)
Q Consensus 354 ~l~~S~dg~~l~~s~s~d~~~~~w~ 378 (612)
.++|||-+++| +.|+.|+.+|+-+
T Consensus 215 ~v~wsP~~qfl-avGsyD~~lrvln 238 (447)
T KOG4497|consen 215 FVEWSPCNQFL-AVGSYDQMLRVLN 238 (447)
T ss_pred EEEeccccceE-Eeeccchhhhhhc
Confidence 88999999999 9999999988765
No 242
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.21 E-value=2.1e-11 Score=119.25 Aligned_cols=191 Identities=16% Similarity=0.205 Sum_probs=158.6
Q ss_pred CCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeE
Q 007234 85 GSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISC 164 (612)
Q Consensus 85 ~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~ 164 (612)
+|..+++|+.-|.|-.+|..++.....+. -...|.++.|-.+.++++++ ....+++|| ..|..++.++.+ ..|..
T Consensus 140 nGrhlllgGrKGHlAa~Dw~t~~L~~Ei~--v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD-~~GtElHClk~~-~~v~r 214 (545)
T KOG1272|consen 140 NGRHLLLGGRKGHLAAFDWVTKKLHFEIN--VMETVRDVTFLHNEQFFAVA-QKKYVYVYD-NNGTELHCLKRH-IRVAR 214 (545)
T ss_pred CccEEEecCCccceeeeecccceeeeeee--hhhhhhhhhhhcchHHHHhh-hhceEEEec-CCCcEEeehhhc-Cchhh
Confidence 38999999999999999999999877663 34679999998888777777 677899999 568778888754 56899
Q ss_pred EEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEe
Q 007234 165 MAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLA 242 (612)
Q Consensus 165 l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~ 242 (612)
+.|-|-.-+|++++ |-++--|+.+|+.+..+....+.+..++-+|-+..+-.+. ..|+|.+|.....+.. ..
T Consensus 215 LeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~Gh-snGtVSlWSP~skePL-----vK 288 (545)
T KOG1272|consen 215 LEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGH-SNGTVSLWSPNSKEPL-----VK 288 (545)
T ss_pred hcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcC-CCceEEecCCCCcchH-----HH
Confidence 99999888888887 8999999999999999988889999999999888777776 6999999998887654 22
Q ss_pred ecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccC
Q 007234 243 MEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK 291 (612)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~ 291 (612)
+-.+...++.+++. ++|++++|.+.|..++|||++...++.+..
T Consensus 289 iLcH~g~V~siAv~-----~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~ 332 (545)
T KOG1272|consen 289 ILCHRGPVSSIAVD-----RGGRYMATTGLDRKVKIWDLRNFYQLHTYR 332 (545)
T ss_pred HHhcCCCcceEEEC-----CCCcEEeecccccceeEeeeccccccceee
Confidence 33444555777786 999999999999999999999887665443
No 243
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.20 E-value=4.3e-09 Score=111.16 Aligned_cols=190 Identities=13% Similarity=0.157 Sum_probs=120.6
Q ss_pred EEEEcCCCCEEEEEeC-CC--cEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCC
Q 007234 10 LTSFSPALDYFAICSG-DA--RIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGS 86 (612)
Q Consensus 10 ~~~fspdg~~las~s~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 86 (612)
+.+|||||++|+..+. ++ .|.+||+.+++.... ....+.. ....|.+. +
T Consensus 222 ~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l-t~~~g~~------------------~~~~wSPD---------G 273 (448)
T PRK04792 222 SPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV-TSFPGIN------------------GAPRFSPD---------G 273 (448)
T ss_pred CceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe-cCCCCCc------------------CCeeECCC---------C
Confidence 4599999999987754 33 588889988875332 1111111 12345443 5
Q ss_pred cEEE-EEECCCc--EEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEec-CC--cEEEEECCCCceeEEEecCCC
Q 007234 87 SLLV-LGTGGGD--VLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA-DG--MVCEIDPLTGSLLGKFRASTK 160 (612)
Q Consensus 87 ~~l~-~gs~~g~--I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~-dg--~v~iwd~~~~~~~~~~~~~~~ 160 (612)
+.|+ +.+.+|. |+++|+.+++.. .+. .+.......+|+|||+.++..+. ++ .|+++|+.+++.... .....
T Consensus 274 ~~La~~~~~~g~~~Iy~~dl~tg~~~-~lt-~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~L-t~~g~ 350 (448)
T PRK04792 274 KKLALVLSKDGQPEIYVVDIATKALT-RIT-RHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRL-TFEGE 350 (448)
T ss_pred CEEEEEEeCCCCeEEEEEECCCCCeE-ECc-cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEE-ecCCC
Confidence 5454 5566675 888899887754 332 35556678899999998776553 33 577778877765432 22222
Q ss_pred CeeEEEECCCCCEEEEeC---C--eEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCe--EEEEEcCCC
Q 007234 161 GISCMAVSSDGKMLATAA---G--QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERY--IALWRTDGV 232 (612)
Q Consensus 161 ~v~~l~~spdg~~l~~~~---g--~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~--i~vwd~~~~ 232 (612)
.....+|+|||++++..+ + .|.++|+.+++.. .+.... ......|+|||+.++.++..++. +.+++.+..
T Consensus 351 ~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~~-~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~ 427 (448)
T PRK04792 351 QNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTSTR-LDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGR 427 (448)
T ss_pred CCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCCC-CCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 334578999999988765 3 6777898887643 333221 22345899999988877644443 666676433
No 244
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.20 E-value=3.9e-09 Score=111.45 Aligned_cols=175 Identities=12% Similarity=0.107 Sum_probs=120.2
Q ss_pred cEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecC---CcEEEEECCCCceeEEEecCCCCeeEEEECCCCCE
Q 007234 97 DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD---GMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKM 173 (612)
Q Consensus 97 ~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~d---g~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~ 173 (612)
.|.++|...+... .+. .+...+....|+|||+.|+.++.+ ..|++||+.+++.... ..+...+.+++|+|||+.
T Consensus 171 ~l~~~d~~g~~~~-~l~-~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~-~~~~~~~~~~~~spDg~~ 247 (417)
T TIGR02800 171 ELQVADYDGANPQ-TIT-RSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV-ASFPGMNGAPAFSPDGSK 247 (417)
T ss_pred eEEEEcCCCCCCE-Eee-cCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCCCCE
Confidence 4888887644432 343 366678999999999998877644 4799999988865433 334456677999999998
Q ss_pred EEEe-C----CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCC--eEEEEEcCCCccccceeeEeecCC
Q 007234 174 LATA-A----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER--YIALWRTDGVKKQSASCVLAMEHP 246 (612)
Q Consensus 174 l~~~-~----g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~--~i~vwd~~~~~~~~~~~~~~~~~~ 246 (612)
|+.. + ..|++||+.+++. ..+..+........|+|||++++.++..++ .|.++++.+++.. .+...
T Consensus 248 l~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~------~l~~~ 320 (417)
T TIGR02800 248 LAVSLSKDGNPDIYVMDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR------RLTFR 320 (417)
T ss_pred EEEEECCCCCccEEEEECCCCCE-EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE------EeecC
Confidence 7654 3 3699999988754 344445555567799999998887663333 5777787765422 11111
Q ss_pred ceeEEeEEecCCccCCCCcEEEEEecCC---cEEEEECCCcce
Q 007234 247 AVFMDCRCIDNGGVDDAGLYVLAISETG---VCYIWYGQNIEE 286 (612)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~t~s~dg---~i~iwd~~~~~~ 286 (612)
........++ |+|++++.++.++ .|.+||+.++..
T Consensus 321 ~~~~~~~~~s-----pdg~~i~~~~~~~~~~~i~~~d~~~~~~ 358 (417)
T TIGR02800 321 GGYNASPSWS-----PDGDLIAFVHREGGGFNIAVMDLDGGGE 358 (417)
T ss_pred CCCccCeEEC-----CCCCEEEEEEccCCceEEEEEeCCCCCe
Confidence 2222334565 9999999988776 788999877543
No 245
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.19 E-value=1.2e-08 Score=108.08 Aligned_cols=181 Identities=13% Similarity=0.100 Sum_probs=116.7
Q ss_pred CcEEEEEECC-C--cEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEE-EEecCC--cEEEEECCCCceeEEEecCC
Q 007234 86 SSLLVLGTGG-G--DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIY-SAGADG--MVCEIDPLTGSLLGKFRAST 159 (612)
Q Consensus 86 ~~~l~~gs~~-g--~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~-s~s~dg--~v~iwd~~~~~~~~~~~~~~ 159 (612)
++.|+..+.. + .|.+||+.+++... + ....+.+....|+|||+.|+ +.+.+| .|++||+.+++.. .+..+.
T Consensus 210 G~~la~~s~~~~~~~l~~~~l~~g~~~~-l-~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~ 286 (430)
T PRK00178 210 GKRIAYVSFEQKRPRIFVQNLDTGRREQ-I-TNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHP 286 (430)
T ss_pred CCEEEEEEcCCCCCEEEEEECCCCCEEE-c-cCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EcccCC
Confidence 6666655433 3 49999999887642 2 22334556789999999876 444555 5888899887654 344445
Q ss_pred CCeeEEEECCCCCEEEEeC---C--eEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCC--eEEEEEcCCC
Q 007234 160 KGISCMAVSSDGKMLATAA---G--QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER--YIALWRTDGV 232 (612)
Q Consensus 160 ~~v~~l~~spdg~~l~~~~---g--~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~--~i~vwd~~~~ 232 (612)
.......|+|||+.++..+ | .|+++|+.+++..+ +...........|+|+|++++..+..++ .|.+||+.++
T Consensus 287 ~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg 365 (430)
T PRK00178 287 AIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRG 365 (430)
T ss_pred CCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCC
Confidence 5567789999999887655 2 68888988876433 3222223345789999999988764343 5788898877
Q ss_pred ccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecC-C--cEEEEECC
Q 007234 233 KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET-G--VCYIWYGQ 282 (612)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~d-g--~i~iwd~~ 282 (612)
+.. . .. ..... ....|+ |||++++..+.+ | .|.+++..
T Consensus 366 ~~~---~-lt--~~~~~-~~p~~s-----pdg~~i~~~~~~~g~~~l~~~~~~ 406 (430)
T PRK00178 366 SVR---I-LT--DTSLD-ESPSVA-----PNGTMLIYATRQQGRGVLMLVSIN 406 (430)
T ss_pred CEE---E-cc--CCCCC-CCceEC-----CCCCEEEEEEecCCceEEEEEECC
Confidence 533 1 11 11111 123455 999998887654 3 46666654
No 246
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.19 E-value=5.8e-09 Score=110.39 Aligned_cols=174 Identities=11% Similarity=0.056 Sum_probs=118.5
Q ss_pred EEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecC---CcEEEEECCCCceeEEEecCCCCeeEEEECCCCCEE
Q 007234 98 VLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD---GMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKML 174 (612)
Q Consensus 98 I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~d---g~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l 174 (612)
|.++|...+... .+ ..+...+....|+|||+.|+..+.+ ..|.+||+.+++... +....+......|+|||+.|
T Consensus 181 l~~~d~~g~~~~-~l-~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~l 257 (430)
T PRK00178 181 LQRSDYDGARAV-TL-LQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKL 257 (430)
T ss_pred EEEECCCCCCce-EE-ecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEE
Confidence 777887765543 33 2466789999999999998776643 369999998886543 33333445678999999988
Q ss_pred EEe-C--C--eEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCC--eEEEEEcCCCccccceeeEeecCCc
Q 007234 175 ATA-A--G--QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER--YIALWRTDGVKKQSASCVLAMEHPA 247 (612)
Q Consensus 175 ~~~-~--g--~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~ 247 (612)
+.. + | .|++||+.+++. ..+..+........|+|||+.++..+..++ .|.++++.+++.. . .....
T Consensus 258 a~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~---~-lt~~~-- 330 (430)
T PRK00178 258 AFVLSKDGNPEIYVMDLASRQL-SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE---R-VTFVG-- 330 (430)
T ss_pred EEEEccCCCceEEEEECCCCCe-EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEE---E-eecCC--
Confidence 743 3 3 799999998764 345556666677899999998877764444 5777777766532 1 11111
Q ss_pred eeEEeEEecCCccCCCCcEEEEEecC-C--cEEEEECCCcce
Q 007234 248 VFMDCRCIDNGGVDDAGLYVLAISET-G--VCYIWYGQNIEE 286 (612)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~l~t~s~d-g--~i~iwd~~~~~~ 286 (612)
.......++ |||++++..+.+ | .|.+||+.+++.
T Consensus 331 ~~~~~~~~S-----pdg~~i~~~~~~~~~~~l~~~dl~tg~~ 367 (430)
T PRK00178 331 NYNARPRLS-----ADGKTLVMVHRQDGNFHVAAQDLQRGSV 367 (430)
T ss_pred CCccceEEC-----CCCCEEEEEEccCCceEEEEEECCCCCE
Confidence 112234455 999998887653 3 588899888754
No 247
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.18 E-value=6.3e-10 Score=119.29 Aligned_cols=191 Identities=12% Similarity=0.164 Sum_probs=146.1
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEE
Q 007234 13 FSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLG 92 (612)
Q Consensus 13 fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~g 92 (612)
+.-+...++.+..++.+.+||...+........ .....-++++.|.... + .-++++|
T Consensus 95 l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~----------------~er~~l~~~~~~g~s~-~------~~~i~~g 151 (967)
T KOG0974|consen 95 LFEENKKIALVTSRNSLLIRDSKNSSVLSKIQS----------------DERCTLYSSLIIGDSA-E------ELYIASG 151 (967)
T ss_pred hhhhcceEEEEEcCceEEEEecccCceehhcCC----------------CceEEEEeEEEEeccC-c------EEEEEec
Confidence 344556788888889999999987776655431 1111122233332211 1 4578999
Q ss_pred ECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeE-EEecCCCCeeEEEECCCC
Q 007234 93 TGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLG-KFRASTKGISCMAVSSDG 171 (612)
Q Consensus 93 s~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~v~~l~~spdg 171 (612)
+..|.|.+|++....... ...+|.+.|.++.|+-||.+++++|.|.++++|++.+.+... +.-+|...+..++|.|.
T Consensus 152 sv~~~iivW~~~~dn~p~-~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n- 229 (967)
T KOG0974|consen 152 SVFGEIIVWKPHEDNKPI-RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN- 229 (967)
T ss_pred cccccEEEEeccccCCcc-eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc-
Confidence 999999999998444433 347899999999999999999999999999999999988776 55678999999999998
Q ss_pred CEEEEeC--CeEEEEEcCCCeeEEEEecCCC-CEEEEEEeeCCcEEEEEEcCCCeEEEEEcCC
Q 007234 172 KMLATAA--GQLKTFNCSDHKKMQKFSGHPG-AVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (612)
Q Consensus 172 ~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~-~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~ 231 (612)
.+++++ -+.++|+.. ++.+..+.+|.. .+..++..++....++++ .|+.+++|++..
T Consensus 230 -~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g-~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 230 -RIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGG-NDSTLKLWDLNG 289 (967)
T ss_pred -eeEEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcCCceEEEeec-cCcchhhhhhhc
Confidence 777777 799999764 445557778864 588899988888888887 799999999754
No 248
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.18 E-value=5.5e-08 Score=93.51 Aligned_cols=244 Identities=15% Similarity=0.202 Sum_probs=154.0
Q ss_pred EEEcCCCCEEEEEeC---CCcEEEEECCC--CcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccC
Q 007234 11 TSFSPALDYFAICSG---DARIKIWDTLK--GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLG 85 (612)
Q Consensus 11 ~~fspdg~~las~s~---dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 85 (612)
++|+|++++|.++-. +|.|..|.++. |++...-.. .......|- .+.+++
T Consensus 45 l~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~-----------------~~~g~~p~y--vsvd~~------ 99 (346)
T COG2706 45 LAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQ-----------------TLPGSPPCY--VSVDED------ 99 (346)
T ss_pred EEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeecc-----------------ccCCCCCeE--EEECCC------
Confidence 399999998888754 47777776654 554321110 001111111 122222
Q ss_pred CcEEEEEEC-CCcEEEEEcCC-CeEEE--EeccCCCCC----------eEEEEEecCCCEEEEEec-CCcEEEEECCCCc
Q 007234 86 SSLLVLGTG-GGDVLALAVSA-GQLKW--RLSDCHPGG----------VSAISFATHGSCIYSAGA-DGMVCEIDPLTGS 150 (612)
Q Consensus 86 ~~~l~~gs~-~g~I~vwd~~~-~~~~~--~~~~~h~~~----------V~~l~~sp~~~~l~s~s~-dg~v~iwd~~~~~ 150 (612)
+++++++.- .|.|.++-++. |.... .. ..|.+. +....|.|++++|++++. -..|.+|++..|+
T Consensus 100 g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~-~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~ 178 (346)
T COG2706 100 GRFVFVANYHSGSVSVYPLQADGSLQPVVQV-VKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGK 178 (346)
T ss_pred CCEEEEEEccCceEEEEEcccCCccccceee-eecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCc
Confidence 777777765 46799999966 33211 11 135544 888999999999999863 2468999998776
Q ss_pred eeEEE---ecCCCCeeEEEECCCCCEEEEeC---CeEEEEEcCCC-eeEEEEec---------CCCCEEEEEEeeCCcEE
Q 007234 151 LLGKF---RASTKGISCMAVSSDGKMLATAA---GQLKTFNCSDH-KKMQKFSG---------HPGAVRFMTFSDNGKYV 214 (612)
Q Consensus 151 ~~~~~---~~~~~~v~~l~~spdg~~l~~~~---g~i~lwd~~~~-~~~~~~~~---------h~~~v~~l~~sp~~~~l 214 (612)
....- -....+...|.|+|++++..+.. ++|-+|..... ..+..++. -......|..+|||++|
T Consensus 179 L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFL 258 (346)
T COG2706 179 LTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFL 258 (346)
T ss_pred cccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEE
Confidence 53321 12345779999999999999887 89999998773 22333322 12456788999999999
Q ss_pred EEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCC-cEEEEEC--CCcce
Q 007234 215 LSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG-VCYIWYG--QNIEE 286 (612)
Q Consensus 215 ~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg-~i~iwd~--~~~~~ 286 (612)
+++-.....|.+|.+...... ...+..........+...+. ++|++|+++.+++ .|.+|.. ++|+.
T Consensus 259 YasNRg~dsI~~f~V~~~~g~-L~~~~~~~teg~~PR~F~i~-----~~g~~Liaa~q~sd~i~vf~~d~~TG~L 327 (346)
T COG2706 259 YASNRGHDSIAVFSVDPDGGK-LELVGITPTEGQFPRDFNIN-----PSGRFLIAANQKSDNITVFERDKETGRL 327 (346)
T ss_pred EEecCCCCeEEEEEEcCCCCE-EEEEEEeccCCcCCccceeC-----CCCCEEEEEccCCCcEEEEEEcCCCceE
Confidence 987655567888887654321 01122222333334455565 8999999998854 7888864 34443
No 249
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.17 E-value=5.7e-08 Score=93.37 Aligned_cols=275 Identities=14% Similarity=0.118 Sum_probs=168.5
Q ss_pred EEEEECC----CcEEEEEcCCC--eEEEEeccCCCCCeEEEEEecCCCEEEEEecC---CcEEEEECCC--CceeE--EE
Q 007234 89 LVLGTGG----GDVLALAVSAG--QLKWRLSDCHPGGVSAISFATHGSCIYSAGAD---GMVCEIDPLT--GSLLG--KF 155 (612)
Q Consensus 89 l~~gs~~----g~I~vwd~~~~--~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~d---g~v~iwd~~~--~~~~~--~~ 155 (612)
+++|+.. .-|++|++.+. +......-.+.+.++-++|+|+++.|+++..+ |.|..|.+.. |+... ..
T Consensus 5 ~YiGtyT~~~s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~ 84 (346)
T COG2706 5 VYIGTYTKRESQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQ 84 (346)
T ss_pred EEEeeecccCCCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeecc
Confidence 4555543 44999998743 32211223567889999999999999998654 6677666553 54422 22
Q ss_pred ecCCCCeeEEEECCCCCEEEEeC---CeEEEEEcCC-Cee---EEEEecCCCC----------EEEEEEeeCCcEEEEEE
Q 007234 156 RASTKGISCMAVSSDGKMLATAA---GQLKTFNCSD-HKK---MQKFSGHPGA----------VRFMTFSDNGKYVLSSA 218 (612)
Q Consensus 156 ~~~~~~v~~l~~spdg~~l~~~~---g~i~lwd~~~-~~~---~~~~~~h~~~----------v~~l~~sp~~~~l~s~s 218 (612)
.....+...++++++|++++++. |.|.++-++. |.+ +..+ .|.+. +....|.|++++++++.
T Consensus 85 ~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~-~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~D 163 (346)
T COG2706 85 TLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVV-KHTGSGPHERQESPHVHSANFTPDGRYLVVPD 163 (346)
T ss_pred ccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeee-ecCCCCCCccccCCccceeeeCCCCCEEEEee
Confidence 22334558999999999999998 8999999865 432 2222 35444 78889999999999987
Q ss_pred cCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEec-CCcEEEEECCCc-c---eecccCCc
Q 007234 219 VGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-TGVCYIWYGQNI-E---ELRNTKAT 293 (612)
Q Consensus 219 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~-dg~i~iwd~~~~-~---~~~~~~~~ 293 (612)
.+-..|.+|++..++........ + .+..-.+-+.|. |++++....++ +++|-+|..... . .++.+...
T Consensus 164 LG~Dri~~y~~~dg~L~~~~~~~-v-~~G~GPRHi~FH-----pn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tl 236 (346)
T COG2706 164 LGTDRIFLYDLDDGKLTPADPAE-V-KPGAGPRHIVFH-----PNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTL 236 (346)
T ss_pred cCCceEEEEEcccCccccccccc-c-CCCCCcceEEEc-----CCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccC
Confidence 66668999999977654322211 2 334444566676 99999999887 999999997763 1 22211111
Q ss_pred -----eeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCcc---CceEEEeeccCCCeEEEEecCCCceEe
Q 007234 294 -----KILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLL---KPSFQKILVNSGEDINLNCSQDGVLLP 365 (612)
Q Consensus 294 -----~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~---~~~~~~~~~h~~~v~~l~~S~dg~~l~ 365 (612)
.....+....+++++ .+.++..- .| .+.+..=... -...+....+...-....++++|++|+
T Consensus 237 P~dF~g~~~~aaIhis~dGr----FLYasNRg-----~d-sI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Li 306 (346)
T COG2706 237 PEDFTGTNWAAAIHISPDGR----FLYASNRG-----HD-SIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLI 306 (346)
T ss_pred ccccCCCCceeEEEECCCCC----EEEEecCC-----CC-eEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEE
Confidence 111122222344444 33333221 01 1111100001 111222222443467788999999997
Q ss_pred ccccceeeecceeeec
Q 007234 366 MSQSLLKSKRGRYVQN 381 (612)
Q Consensus 366 ~s~s~d~~~~~w~~~~ 381 (612)
+++-.+.++.+..+.+
T Consensus 307 aa~q~sd~i~vf~~d~ 322 (346)
T COG2706 307 AANQKSDNITVFERDK 322 (346)
T ss_pred EEccCCCcEEEEEEcC
Confidence 7777777788887744
No 250
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.17 E-value=1.3e-08 Score=107.46 Aligned_cols=181 Identities=15% Similarity=0.093 Sum_probs=113.0
Q ss_pred CcEEEEEEC-CC--cEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEE-EecCCc--EEEEECCCCceeEEEecCC
Q 007234 86 SSLLVLGTG-GG--DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYS-AGADGM--VCEIDPLTGSLLGKFRAST 159 (612)
Q Consensus 86 ~~~l~~gs~-~g--~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s-~s~dg~--v~iwd~~~~~~~~~~~~~~ 159 (612)
++.|+..+. +| .|++||+.+++... +. ...+......|+|||+.|+. .+.+|. |+++|+.+++.. .+..+.
T Consensus 229 G~~La~~s~~~g~~~L~~~dl~tg~~~~-lt-~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~ 305 (448)
T PRK04792 229 GRKLAYVSFENRKAEIFVQDIYTQVREK-VT-SFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALT-RITRHR 305 (448)
T ss_pred CCEEEEEEecCCCcEEEEEECCCCCeEE-ec-CCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE-ECccCC
Confidence 666665543 33 48999998887532 21 12234457899999998764 455664 888898877653 344444
Q ss_pred CCeeEEEECCCCCEEEEeC-----CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCC--eEEEEEcCCC
Q 007234 160 KGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER--YIALWRTDGV 232 (612)
Q Consensus 160 ~~v~~l~~spdg~~l~~~~-----g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~--~i~vwd~~~~ 232 (612)
......+|+|||+.++..+ ..|+++|+.+++..+ +..+........|+|||++++..+..++ .|.++|+.++
T Consensus 306 ~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g 384 (448)
T PRK04792 306 AIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETG 384 (448)
T ss_pred CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 5567889999999887655 368888888776533 3222223345789999999888764444 4555677666
Q ss_pred ccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEec-CC--cEEEEECC
Q 007234 233 KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-TG--VCYIWYGQ 282 (612)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~-dg--~i~iwd~~ 282 (612)
... . ....... ....|+ |||++|+..+. +| .+++++.+
T Consensus 385 ~~~---~-lt~~~~d---~~ps~s-----pdG~~I~~~~~~~g~~~l~~~~~~ 425 (448)
T PRK04792 385 AMQ---V-LTSTRLD---ESPSVA-----PNGTMVIYSTTYQGKQVLAAVSID 425 (448)
T ss_pred CeE---E-ccCCCCC---CCceEC-----CCCCEEEEEEecCCceEEEEEECC
Confidence 532 1 1111111 112355 99998877665 33 36667763
No 251
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.15 E-value=7e-09 Score=108.74 Aligned_cols=197 Identities=16% Similarity=0.153 Sum_probs=120.4
Q ss_pred eEEEEcCCCCE--EE-EEeCCC--cEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccc
Q 007234 9 ILTSFSPALDY--FA-ICSGDA--RIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (612)
Q Consensus 9 l~~~fspdg~~--la-s~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (612)
+..+|||||+. ++ +...+| .|.+.++.+|+.... ....+......|+++
T Consensus 188 ~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~l-t~~~g~~~~p~wSPD------------------------- 241 (428)
T PRK01029 188 ITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKI-LALQGNQLMPTFSPR------------------------- 241 (428)
T ss_pred ccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEe-ecCCCCccceEECCC-------------------------
Confidence 45599999975 32 333343 577779887764432 222222222333333
Q ss_pred cCCcEEEEEE-CCC--cEE--EEEcCCC--eEEEEeccCCCCCeEEEEEecCCCEEEEEe-cCCcEEEE--ECCC-Ccee
Q 007234 84 LGSSLLVLGT-GGG--DVL--ALAVSAG--QLKWRLSDCHPGGVSAISFATHGSCIYSAG-ADGMVCEI--DPLT-GSLL 152 (612)
Q Consensus 84 ~~~~~l~~gs-~~g--~I~--vwd~~~~--~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s-~dg~v~iw--d~~~-~~~~ 152 (612)
++.|+..+ .+| .+. +|++..+ .....+...+.......+|+|||+.|+..+ .+|...+| ++.. +...
T Consensus 242 --G~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~ 319 (428)
T PRK01029 242 --KKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSP 319 (428)
T ss_pred --CCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccce
Confidence 55565544 334 343 4676653 122233333334456789999999877665 46655555 4432 2334
Q ss_pred EEEecCCCCeeEEEECCCCCEEEEeC-----CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcC--CCeEE
Q 007234 153 GKFRASTKGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVG--ERYIA 225 (612)
Q Consensus 153 ~~~~~~~~~v~~l~~spdg~~l~~~~-----g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~--d~~i~ 225 (612)
..+......+....|+|||+.|+... ..|++||+.+++.. .+......+....|+|||+.|+..+.. ...|.
T Consensus 320 ~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~-~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~ 398 (428)
T PRK01029 320 RLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDY-QLTTSPENKESPSWAIDSLHLVYSAGNSNESELY 398 (428)
T ss_pred EEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeE-EccCCCCCccceEECCCCCEEEEEECCCCCceEE
Confidence 44544445677899999999988664 37999999988754 344334456788999999988765432 34688
Q ss_pred EEEcCCCcc
Q 007234 226 LWRTDGVKK 234 (612)
Q Consensus 226 vwd~~~~~~ 234 (612)
+|++.+++.
T Consensus 399 ~vdl~~g~~ 407 (428)
T PRK01029 399 LISLITKKT 407 (428)
T ss_pred EEECCCCCE
Confidence 888877653
No 252
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.15 E-value=1.1e-09 Score=101.42 Aligned_cols=198 Identities=14% Similarity=0.156 Sum_probs=144.1
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEE--EeeccCCccccccccccccccccccceeEEEeeecccccccccC
Q 007234 8 DILTSFSPALDYFAICSGDARIKIWDTLKGQVQT--EFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLG 85 (612)
Q Consensus 8 ~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 85 (612)
.+++.|++.|..++++..+|.+.+-+........ +++.|........|+.. +
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~--------------------------~ 177 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDK--------------------------E 177 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccC--------------------------C
Confidence 5688999999999999999999865555444433 66666554444333322 1
Q ss_pred CcEEEEEECCCcEEEEEcC-CCeEEEEeccCCCCCeEEEEEec-CCCEEEEEecCCcEEEEECC-CCceeEEEecCCCCe
Q 007234 86 SSLLVLGTGGGDVLALAVS-AGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPL-TGSLLGKFRASTKGI 162 (612)
Q Consensus 86 ~~~l~~gs~~g~I~vwd~~-~~~~~~~~~~~h~~~V~~l~~sp-~~~~l~s~s~dg~v~iwd~~-~~~~~~~~~~~~~~v 162 (612)
.+++.+|+.||.+.-||++ .++.+++-.+.|...|.++.-+| .+.++++|+.|..|++||.+ -++++..-. ..++|
T Consensus 178 pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGV 256 (339)
T KOG0280|consen 178 PNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGV 256 (339)
T ss_pred CceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-cccce
Confidence 6789999999999999999 56677776677999999998887 56789999999999999998 566665533 34789
Q ss_pred eEEEECCCCC--EEEEeC-CeEEEEEcCCC--e---eEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEE-EEEcCCC
Q 007234 163 SCMAVSSDGK--MLATAA-GQLKTFNCSDH--K---KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIA-LWRTDGV 232 (612)
Q Consensus 163 ~~l~~spdg~--~l~~~~-g~i~lwd~~~~--~---~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~-vwd~~~~ 232 (612)
+.+.++|.-. +|+++- +-.+|.+.+.+ + .....+.|.+-+..-.|.....++++|+..|+.++ +|-.-++
T Consensus 257 WRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 257 WRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred EEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence 9999999543 333333 55666666543 2 34455677777777777555567899888898855 8865554
No 253
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=5.8e-09 Score=104.93 Aligned_cols=129 Identities=16% Similarity=0.187 Sum_probs=92.9
Q ss_pred cEEEEECCCCceeEEEecCCCCeeEEEECCCCCEEEEeC----CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEE
Q 007234 140 MVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVL 215 (612)
Q Consensus 140 ~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~----g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~ 215 (612)
++++.+++...+...+. ..++|.++.|+|+|+.+++.. ..+.+||++ +.++..+ ..++-+++-|+|.|++++
T Consensus 252 ~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp~g~ii~ 327 (566)
T KOG2315|consen 252 TLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNPHGNIIL 327 (566)
T ss_pred eEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECCCCCEEE
Confidence 46666665222322232 367999999999999888776 589999985 4455555 467778999999999999
Q ss_pred EEEcC--CCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEec------CCcEEEEECCCc
Q 007234 216 SSAVG--ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE------TGVCYIWYGQNI 284 (612)
Q Consensus 216 s~s~~--d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~------dg~i~iwd~~~~ 284 (612)
.+|.+ .|.+-+||+.+.+++ ..+... ..+...|+ |||.+++|++. |+.++||+....
T Consensus 328 lAGFGNL~G~mEvwDv~n~K~i-----~~~~a~--~tt~~eW~-----PdGe~flTATTaPRlrvdNg~KiwhytG~ 392 (566)
T KOG2315|consen 328 LAGFGNLPGDMEVWDVPNRKLI-----AKFKAA--NTTVFEWS-----PDGEYFLTATTAPRLRVDNGIKIWHYTGS 392 (566)
T ss_pred EeecCCCCCceEEEeccchhhc-----cccccC--CceEEEEc-----CCCcEEEEEeccccEEecCCeEEEEecCc
Confidence 98854 368999999986544 232222 23445676 99999999975 788999996433
No 254
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.14 E-value=2.4e-10 Score=117.62 Aligned_cols=202 Identities=12% Similarity=0.161 Sum_probs=142.3
Q ss_pred cccceeEEEEcCCCCEEEEEeCCCcEEEEECCCC-cEEEEeeccCCccccccccccccccccccceeEEEeeeccccccc
Q 007234 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKG-QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (612)
Q Consensus 4 ~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (612)
+++..+ ..+|.|+-+|.++.-|.+ +-|+..- ....-+ .|.. ........|.+...
T Consensus 25 ~~~~a~--si~p~grdi~lAsr~gl~-i~dld~p~~ppr~l-~h~t----------------pw~vad~qws~h~a---- 80 (1081)
T KOG0309|consen 25 GGFNAV--SINPSGRDIVLASRQGLY-IIDLDDPFTPPRWL-HHIT----------------PWQVADVQWSPHPA---- 80 (1081)
T ss_pred Ccccce--eeccccchhhhhhhcCeE-EEeccCCCCCceee-eccC----------------cchhcceecccCCC----
Confidence 345444 899999999999887754 4465432 221111 1110 22344556665543
Q ss_pred ccCCcEEEEEECCCcEEEEEcCC--CeEEEEeccCCCCCeEEEEEecCCC-EEEEEecCCcEEEEECCCCc-eeEEEecC
Q 007234 83 KLGSSLLVLGTGGGDVLALAVSA--GQLKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTGS-LLGKFRAS 158 (612)
Q Consensus 83 ~~~~~~l~~gs~~g~I~vwd~~~--~~~~~~~~~~h~~~V~~l~~sp~~~-~l~s~s~dg~v~iwd~~~~~-~~~~~~~~ 158 (612)
..+-++.+.+.+-.+|++.. .+.+.-++.+|+..|+++.|+|... .+++|+.|-.|..||+++.. ++..+..-
T Consensus 81 ---~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w 157 (1081)
T KOG0309|consen 81 ---KPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSW 157 (1081)
T ss_pred ---CceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecc
Confidence 35567777777888998753 3344445578999999999998654 58999999999999998764 55556555
Q ss_pred CCCeeEEEECC-CCCEEEEeC-CeEEEEEcCCC-eeEEEEecCCCCEEEEEEeeCC-cEEEEEEcCCCeEEEEEcCCCc
Q 007234 159 TKGISCMAVSS-DGKMLATAA-GQLKTFNCSDH-KKMQKFSGHPGAVRFMTFSDNG-KYVLSSAVGERYIALWRTDGVK 233 (612)
Q Consensus 159 ~~~v~~l~~sp-dg~~l~~~~-g~i~lwd~~~~-~~~~~~~~h~~~v~~l~~sp~~-~~l~s~s~~d~~i~vwd~~~~~ 233 (612)
......++|+. ++..+|+.. ..|++||.+.| .++..+++|...|+.+.|..-- ..+.+++ .|++|+.||..+..
T Consensus 158 ~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~-~d~tvkfw~y~kSt 235 (1081)
T KOG0309|consen 158 RSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSS-NDGTVKFWDYSKST 235 (1081)
T ss_pred cccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccC-CCCceeeecccccc
Confidence 66778899986 556666655 68999999876 5688889999999999987532 3456665 79999999987654
No 255
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.14 E-value=8.9e-08 Score=95.71 Aligned_cols=266 Identities=14% Similarity=0.067 Sum_probs=150.2
Q ss_pred CcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEec----------CCcEEEEECCCCceeEEEecCCC-----
Q 007234 96 GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA----------DGMVCEIDPLTGSLLGKFRASTK----- 160 (612)
Q Consensus 96 g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~----------dg~v~iwd~~~~~~~~~~~~~~~----- 160 (612)
|.|.+.|..+++.+..+..+.... .+ ++|||+.++.|.. +..|.+||..+.+.+..+.....
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~--~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~ 103 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN--PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLV 103 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc--ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhc
Confidence 889999999999998886554333 34 9999999888765 78999999999999988875322
Q ss_pred --CeeEEEECCCCCEEEEeC----CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCcc
Q 007234 161 --GISCMAVSSDGKMLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK 234 (612)
Q Consensus 161 --~v~~l~~spdg~~l~~~~----g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~ 234 (612)
....++++|||++|++.. +.|.+.|+.+++.+.++.-.. ...-.. .++..+++.| .||......+.+...
T Consensus 104 ~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~-t~e~~~~~~~--~Dg~~~~v~~d~~g~ 179 (352)
T TIGR02658 104 GTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFP-TANDTFFMHC--RDGSLAKVGYGTKGN 179 (352)
T ss_pred cCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEE-ecCCccEEEe--ecCceEEEEecCCCc
Confidence 234789999999999776 699999999999998887422 111122 2222333333 255544444433221
Q ss_pred ccceeeEeecCC-ceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcce-----ecccCCcee--Ee--e--cccc
Q 007234 235 QSASCVLAMEHP-AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE-----LRNTKATKI--LS--S--SEDV 302 (612)
Q Consensus 235 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~-----~~~~~~~~~--~~--~--~~~~ 302 (612)
........+... .....--.+. ..+|+++++..+ |.|.+.|+..... ......... .+ . ....
T Consensus 180 ~~~~~~~vf~~~~~~v~~rP~~~----~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia 254 (352)
T TIGR02658 180 PKIKPTEVFHPEDEYLINHPAYS----NKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVA 254 (352)
T ss_pred eEEeeeeeecCCccccccCCceE----cCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEE
Confidence 100000111000 0000000112 137888877777 9999999544322 111110000 00 0 0012
Q ss_pred cCCCCcccchhhhc-c--cccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCc-eEeccccceeeeccee
Q 007234 303 NSKSQKSATAAIFA-A--KLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGV-LLPMSQSLLKSKRGRY 378 (612)
Q Consensus 303 ~s~~~~~~~~~i~~-~--~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~-~l~~s~s~d~~~~~w~ 378 (612)
+.++++ .+.. . ...+.-.....++++.+.... .....+.. ...++.+++||||+ +|.++...++.+.+-+
T Consensus 255 ~~~dg~----~lyV~~~~~~~~thk~~~~~V~ViD~~t~-kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD 328 (352)
T TIGR02658 255 YHRARD----RIYLLADQRAKWTHKTASRFLFVVDAKTG-KRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFD 328 (352)
T ss_pred EcCCCC----EEEEEecCCccccccCCCCEEEEEECCCC-eEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEE
Confidence 344544 2222 1 111112222345666664333 33333333 23789999999999 7744554566666666
Q ss_pred e
Q 007234 379 V 379 (612)
Q Consensus 379 ~ 379 (612)
.
T Consensus 329 ~ 329 (352)
T TIGR02658 329 A 329 (352)
T ss_pred C
Confidence 5
No 256
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.12 E-value=1.4e-09 Score=109.19 Aligned_cols=190 Identities=14% Similarity=0.153 Sum_probs=141.6
Q ss_pred EEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEE
Q 007234 12 SFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV 90 (612)
Q Consensus 12 ~fsp-dg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~ 90 (612)
+|+. ...++..| ....|.=+|++.|+.+.-|....+.++.+..+.- ..+|+
T Consensus 140 ~y~~~scDly~~g-sg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~---------------------------hgLla 191 (703)
T KOG2321|consen 140 KYHKPSCDLYLVG-SGSEVYRLNLEQGRFLNPFETDSGELNVVSINEE---------------------------HGLLA 191 (703)
T ss_pred cccCCCccEEEee-cCcceEEEEccccccccccccccccceeeeecCc---------------------------cceEE
Confidence 5544 34444444 3446777799999998888755554444333333 77899
Q ss_pred EEECCCcEEEEEcCCCeEEEEec-----cCCCC-----CeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEe-cCC
Q 007234 91 LGTGGGDVLALAVSAGQLKWRLS-----DCHPG-----GVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR-AST 159 (612)
Q Consensus 91 ~gs~~g~I~vwd~~~~~~~~~~~-----~~h~~-----~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~ 159 (612)
+|+.+|.|..||+++......+. ..|.+ .|+++.|+.+|-.+++|..+|.|.+||+++.+++..-. +..
T Consensus 192 ~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e 271 (703)
T KOG2321|consen 192 CGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYE 271 (703)
T ss_pred ecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCc
Confidence 99999999999999876554442 22333 39999999999999999999999999999988766533 223
Q ss_pred CCeeEEEECCC--CCEEEEeC-CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCC
Q 007234 160 KGISCMAVSSD--GKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (612)
Q Consensus 160 ~~v~~l~~spd--g~~l~~~~-g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~ 231 (612)
-+|..+.|.+. +..+++.. ..++|||-.+|+....+.. ...++.+++-|++-.++++- .+..+..|=+..
T Consensus 272 ~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEp-t~~lND~C~~p~sGm~f~An-e~~~m~~yyiP~ 344 (703)
T KOG2321|consen 272 LPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEP-TSDLNDFCFVPGSGMFFTAN-ESSKMHTYYIPS 344 (703)
T ss_pred cceeeecccccCCCceEEecchHHhhhcccccCCceeeccc-cCCcCceeeecCCceEEEec-CCCcceeEEccc
Confidence 48999999775 67788888 8999999999999888763 45599999999988888875 566666665544
No 257
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.11 E-value=1.3e-08 Score=96.52 Aligned_cols=232 Identities=19% Similarity=0.287 Sum_probs=154.2
Q ss_pred EcCCCCEEEEEeCCCcEEEE-ECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEE
Q 007234 13 FSPALDYFAICSGDARIKIW-DTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL 91 (612)
Q Consensus 13 fspdg~~las~s~dg~i~iw-d~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~ 91 (612)
.-|-.+-+.+.+.|.++||| +.+.++.-..+. -.....++++...+. ...|++
T Consensus 32 l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~-----------------~~mP~~~~~~~y~~e---------~~~L~v 85 (404)
T KOG1409|consen 32 LIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIY-----------------HYMPSPCSAMEYVSE---------SRRLYV 85 (404)
T ss_pred eccCCCCeEEccccceeeeEEeccccccCchhh-----------------hhCCCCceEeeeecc---------ceEEEE
Confidence 34445567889999999999 455555443332 111234455554443 567999
Q ss_pred EECCCcEEEEEcCCCe----EEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEEEE
Q 007234 92 GTGGGDVLALAVSAGQ----LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAV 167 (612)
Q Consensus 92 gs~~g~I~vwd~~~~~----~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~ 167 (612)
|-.+|++.-+.+...- .. +....|...|..+-|+-....+++++.|..+...-.+.+..+..+.- ....+++.+
T Consensus 86 g~~ngtvtefs~sedfnkm~~~-r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~-~~~~t~~~~ 163 (404)
T KOG1409|consen 86 GQDNGTVTEFALSEDFNKMTFL-KDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNF-ETPASALQF 163 (404)
T ss_pred EEecceEEEEEhhhhhhhcchh-hhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEe-eccCCCCce
Confidence 9999999888775432 22 22357999999999998888999999999887666666655443221 111222222
Q ss_pred CCCCCEEEEeC--CeEEEE--EcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEee
Q 007234 168 SSDGKMLATAA--GQLKTF--NCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAM 243 (612)
Q Consensus 168 spdg~~l~~~~--g~i~lw--d~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~ 243 (612)
.-. +...|. |.|.+. ....-.++.++.+|.+.+.++.|.|....++++. .|..+.+||+...+.. .....
T Consensus 164 d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~-~d~~vi~wdigg~~g~---~~el~ 237 (404)
T KOG1409|consen 164 DAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGA-SDHSVIMWDIGGRKGT---AYELQ 237 (404)
T ss_pred eeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEecc-ccCceEEEeccCCcce---eeeec
Confidence 212 445555 544443 3345567889999999999999999999999987 6999999999876644 22222
Q ss_pred cCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCc
Q 007234 244 EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (612)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~ 284 (612)
.|.. -+..++.. +--+.+++++.||.|.+|+.+..
T Consensus 238 gh~~-kV~~l~~~-----~~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 238 GHND-KVQALSYA-----QHTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred cchh-hhhhhhhh-----hhheeeeeccCCCeEEEEeccce
Confidence 2333 23333333 45578999999999999997544
No 258
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.11 E-value=7.5e-08 Score=100.10 Aligned_cols=224 Identities=16% Similarity=0.142 Sum_probs=142.6
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEECC
Q 007234 16 ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGG 95 (612)
Q Consensus 16 dg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~ 95 (612)
++..+.+++.+|.|..+|..+|+.+..+........ .. . .+ +..+++++.+
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~---------------~p--~----v~--------~~~v~v~~~~ 114 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSG---------------GV--G----AD--------GGLVFVGTEK 114 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCccc---------------ce--E----Ec--------CCEEEEEcCC
Confidence 466788888899999999999998877653221000 00 0 00 5678899999
Q ss_pred CcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCe-----eEEEECCC
Q 007234 96 GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI-----SCMAVSSD 170 (612)
Q Consensus 96 g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v-----~~l~~spd 170 (612)
|.+..+|..+|+.+++.... ..+.+.-.. .+..++.++.++.++.||.++|+.+-.+......+ .+.... +
T Consensus 115 g~l~ald~~tG~~~W~~~~~--~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~ 190 (377)
T TIGR03300 115 GEVIALDAEDGKELWRAKLS--SEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-D 190 (377)
T ss_pred CEEEEEECCCCcEeeeeccC--ceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-C
Confidence 99999999999998876422 223221111 34567778889999999999999877765433211 111222 3
Q ss_pred CCEEEEeC--CeEEEEEcCCCeeEEEEecCCC----C------E-EEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccc
Q 007234 171 GKMLATAA--GQLKTFNCSDHKKMQKFSGHPG----A------V-RFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA 237 (612)
Q Consensus 171 g~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~----~------v-~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~ 237 (612)
+ .++.+. |.+..+|.++|+.+.+...... . + ....+ .+..++.++ .++.+..||..+++..
T Consensus 191 ~-~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~-~~g~l~a~d~~tG~~~-- 264 (377)
T TIGR03300 191 G-GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAVS-YQGRVAALDLRSGRVL-- 264 (377)
T ss_pred C-EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECCEEEEEE-cCCEEEEEECCCCcEE--
Confidence 4 455554 8999999999987654321100 0 0 01112 234566665 6899999999988643
Q ss_pred eeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceeccc
Q 007234 238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT 290 (612)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~ 290 (612)
........ .... .++..+++++.+|.++.+|..+++.+...
T Consensus 265 ---W~~~~~~~--~~p~-------~~~~~vyv~~~~G~l~~~d~~tG~~~W~~ 305 (377)
T TIGR03300 265 ---WKRDASSY--QGPA-------VDDNRLYVTDADGVVVALDRRSGSELWKN 305 (377)
T ss_pred ---EeeccCCc--cCce-------EeCCEEEEECCCCeEEEEECCCCcEEEcc
Confidence 22221110 1111 23567888889999999999999877544
No 259
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.11 E-value=9.3e-08 Score=110.40 Aligned_cols=250 Identities=10% Similarity=0.060 Sum_probs=149.8
Q ss_pred EEEcCC-CCEEEEEeCCCcEEEEECCCCcEEEEeeccC-CccccccccccccccccccceeEEEeeecccccccccCCcE
Q 007234 11 TSFSPA-LDYFAICSGDARIKIWDTLKGQVQTEFADIA-STETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (612)
Q Consensus 11 ~~fspd-g~~las~s~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (612)
++++++ |+++++-+..++|++||.. |..+..+.+.. .....-.+. ...+ .....+++.+. ++.
T Consensus 573 vavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~----~a~f-~~P~GIavd~~---------gn~ 637 (1057)
T PLN02919 573 LAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFE----DATF-NRPQGLAYNAK---------KNL 637 (1057)
T ss_pred EEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchh----cccc-CCCcEEEEeCC---------CCE
Confidence 388875 5566666778899999985 55554443211 000000000 0000 01233444332 455
Q ss_pred EEEEEC-CCcEEEEEcCCCeEEEEecc-CC---------------CCCeEEEEEec-CCCEEEEEecCCcEEEEECCCCc
Q 007234 89 LVLGTG-GGDVLALAVSAGQLKWRLSD-CH---------------PGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGS 150 (612)
Q Consensus 89 l~~gs~-~g~I~vwd~~~~~~~~~~~~-~h---------------~~~V~~l~~sp-~~~~l~s~s~dg~v~iwd~~~~~ 150 (612)
|+++.. ++.|+++|+.++... .+.. +. -..-++++|+| ++..+++.+.++.|++||..++.
T Consensus 638 LYVaDt~n~~Ir~id~~~~~V~-tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~ 716 (1057)
T PLN02919 638 LYVADTENHALREIDFVNETVR-TLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGV 716 (1057)
T ss_pred EEEEeCCCceEEEEecCCCEEE-EEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCe
Confidence 555554 456999998877643 2211 00 12346899999 55556666778999999987765
Q ss_pred eeEEEecC---------------CCCeeEEEECCCCCEEEEeC---CeEEEEEcCCCeeEEEEec-------------C-
Q 007234 151 LLGKFRAS---------------TKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSG-------------H- 198 (612)
Q Consensus 151 ~~~~~~~~---------------~~~v~~l~~spdg~~l~~~~---g~i~lwd~~~~~~~~~~~~-------------h- 198 (612)
.. .+.+. -.....|+++|+|+.|+++. +.|++||+.++.......+ +
T Consensus 717 v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~d 795 (1057)
T PLN02919 717 TR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHD 795 (1057)
T ss_pred EE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCC
Confidence 42 22211 12456799999998766665 7999999987653211100 0
Q ss_pred -------CCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeec-----------CCceeEEeEEecCCcc
Q 007234 199 -------PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME-----------HPAVFMDCRCIDNGGV 260 (612)
Q Consensus 199 -------~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~ 260 (612)
-....+++++++|..+++-. .++.|++||..++.... +.... ..-.....++++
T Consensus 796 G~g~~~~l~~P~Gvavd~dG~LYVADs-~N~rIrviD~~tg~v~t---iaG~G~~G~~dG~~~~a~l~~P~GIavd---- 867 (1057)
T PLN02919 796 GVGSEVLLQHPLGVLCAKDGQIYVADS-YNHKIKKLDPATKRVTT---LAGTGKAGFKDGKALKAQLSEPAGLALG---- 867 (1057)
T ss_pred CchhhhhccCCceeeEeCCCcEEEEEC-CCCEEEEEECCCCeEEE---EeccCCcCCCCCcccccccCCceEEEEe----
Confidence 01235789999998666654 78999999998765321 11000 001123445665
Q ss_pred CCCCcEEEEEecCCcEEEEECCCcce
Q 007234 261 DDAGLYVLAISETGVCYIWYGQNIEE 286 (612)
Q Consensus 261 ~~~~~~l~t~s~dg~i~iwd~~~~~~ 286 (612)
++|+.+++-+.++.|++||+.+++.
T Consensus 868 -~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 868 -ENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred -CCCCEEEEECCCCEEEEEECCCCcc
Confidence 8999888888899999999988764
No 260
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.10 E-value=2.9e-08 Score=98.83 Aligned_cols=305 Identities=13% Similarity=0.133 Sum_probs=182.8
Q ss_pred ccceeEEEEcCCCCEEEEEeCCC---------------cEEEEECCCCcEEEEeeccCCcccccccccccccccccccee
Q 007234 5 NIRDILTSFSPALDYFAICSGDA---------------RIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYT 69 (612)
Q Consensus 5 ~V~~l~~~fspdg~~las~s~dg---------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 69 (612)
.|+.+ .|||.+.||.+=+..+ .+.|||+.+|..+..|.....+- ..-.
T Consensus 73 ~V~~~--~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~---------------~~Wp 135 (561)
T COG5354 73 DVKYL--DFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPY---------------LGWP 135 (561)
T ss_pred Cceec--ccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcc---------------cccc
Confidence 56667 9999999999855433 49999999999998887544320 0111
Q ss_pred EEEeeecccccccccCCcEEEEEECCCcEEEEEcCCCeEE-EEeccCCCCCeEEEEEecCCCE--EEE-----EecCCcE
Q 007234 70 CMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLK-WRLSDCHPGGVSAISFATHGSC--IYS-----AGADGMV 141 (612)
Q Consensus 70 ~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~-~~~~~~h~~~V~~l~~sp~~~~--l~s-----~s~dg~v 141 (612)
.+.|.-.+ .+++=- ....++|+++ ++..- .-+..-....|....|+|.++. |+. .+.++++
T Consensus 136 ~~k~s~~D---------~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~ 204 (561)
T COG5354 136 VLKFSIDD---------KYVARV-VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMV 204 (561)
T ss_pred eeeeeecc---------hhhhhh-ccCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEE
Confidence 22333322 222222 4456899997 33321 1111112367889999996433 443 3578899
Q ss_pred EEEECCCCceeEEEecCCCCeeEEEECCCCCEEEEeC-------------CeEEEEEcCCCeeEEEEecCCCCEEEEEEe
Q 007234 142 CEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-------------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFS 208 (612)
Q Consensus 142 ~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~-------------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~s 208 (612)
++|.+..+..+.+-.-..-.=..+.|.+.|+++++-- ..+++++++...+ ....+..++|...+|.
T Consensus 205 ~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i-~V~~~~~~pVhdf~W~ 283 (561)
T COG5354 205 RILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSI-PVEKDLKDPVHDFTWE 283 (561)
T ss_pred EEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccccc-ceeccccccceeeeec
Confidence 9999987766655332222235688999998876521 3788888874433 2222668999999999
Q ss_pred eCCcEEEEEE-cCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecC---CcEEEEECCCc
Q 007234 209 DNGKYVLSSA-VGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET---GVCYIWYGQNI 284 (612)
Q Consensus 209 p~~~~l~s~s-~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~d---g~i~iwd~~~~ 284 (612)
|.++.+++++ ..+-.+.++|++..- .+. .+...-....|+ |.+++++.++.| |.+.+||....
T Consensus 284 p~S~~F~vi~g~~pa~~s~~~lr~Nl------~~~--~Pe~~rNT~~fs-----p~~r~il~agF~nl~gni~i~~~~~r 350 (561)
T COG5354 284 PLSSRFAVISGYMPASVSVFDLRGNL------RFY--FPEQKRNTIFFS-----PHERYILFAGFDNLQGNIEIFDPAGR 350 (561)
T ss_pred ccCCceeEEecccccceeecccccce------EEe--cCCccccccccc-----CcccEEEEecCCccccceEEeccCCc
Confidence 9998777665 567789999988762 222 233333445576 899999987765 68999997655
Q ss_pred ceec-ccCCceeEeecccccCCCCcccchhhhcccccceecCCCc--eEEEEeCCccCceEEEeeccCCCeEEEEecCCC
Q 007234 285 EELR-NTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASV--HTFVAYGLLLKPSFQKILVNSGEDINLNCSQDG 361 (612)
Q Consensus 285 ~~~~-~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~--~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg 361 (612)
-.+. .......+.+ .++|++. .+.++...-..+. |. .++-.+|...+ +.+.+.|.|.|
T Consensus 351 f~~~~~~~~~n~s~~---~wspd~q----F~~~~~ts~k~~~-Dn~i~l~~v~g~~~f-----------el~~~~W~p~~ 411 (561)
T COG5354 351 FKVAGAFNGLNTSYC---DWSPDGQ----FYDTDTTSEKLRV-DNSIKLWDVYGAKVF-----------ELTNITWDPSG 411 (561)
T ss_pred eEEEEEeecCCceEe---eccCCce----EEEecCCCccccc-CcceEEEEecCchhh-----------hhhhccccCCc
Confidence 4332 3333332222 3677766 3333332211122 22 22222332222 56677788888
Q ss_pred ceEeccccce
Q 007234 362 VLLPMSQSLL 371 (612)
Q Consensus 362 ~~l~~s~s~d 371 (612)
++. .+.|.+
T Consensus 412 ~~~-ttsSs~ 420 (561)
T COG5354 412 QYV-TTSSSC 420 (561)
T ss_pred ccc-eeeccC
Confidence 887 444433
No 261
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.08 E-value=3e-09 Score=114.20 Aligned_cols=183 Identities=13% Similarity=0.150 Sum_probs=143.5
Q ss_pred CcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCe-----EEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCC
Q 007234 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGV-----SAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK 160 (612)
Q Consensus 86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V-----~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~ 160 (612)
...+++++.+..+.+||...+.....+. +...+ .-+-++++.-++++|+.-+.|.+|+.........+.+|++
T Consensus 99 ~k~i~l~~~~ns~~i~d~~~~~~~~~i~--~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG 176 (967)
T KOG0974|consen 99 NKKIALVTSRNSLLIRDSKNSSVLSKIQ--SDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEG 176 (967)
T ss_pred cceEEEEEcCceEEEEecccCceehhcC--CCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceecccCC
Confidence 6789999999999999999888776553 33322 2233456666799999999999999874433346889999
Q ss_pred CeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEE-EEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccc
Q 007234 161 GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQ-KFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA 237 (612)
Q Consensus 161 ~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~-~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~ 237 (612)
.+.++.++-||+++++.+ .++++|++.+.+... ..-+|+..|..+.|.|+ .+++++ .|.+.++|+.+.....
T Consensus 177 ~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~g-edctcrvW~~~~~~l~-- 251 (967)
T KOG0974|consen 177 SIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVG-EDCTCRVWGVNGTQLE-- 251 (967)
T ss_pred ceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEec-cceEEEEEecccceeh--
Confidence 999999999999999998 899999999988765 66799999999999998 788887 8999999976655432
Q ss_pred eeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCC
Q 007234 238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN 283 (612)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~ 283 (612)
++ ..|...-+..+... ++...++|++.||.+++|++..
T Consensus 252 --~y-~~h~g~~iw~~~~~-----~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 252 --VY-DEHSGKGIWKIAVP-----IGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred --hh-hhhhhcceeEEEEc-----CCceEEEeeccCcchhhhhhhc
Confidence 11 23444444445554 6778899999999999999643
No 262
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.08 E-value=1.7e-07 Score=93.50 Aligned_cols=331 Identities=11% Similarity=0.045 Sum_probs=187.1
Q ss_pred ccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccccc
Q 007234 5 NIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (612)
Q Consensus 5 ~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (612)
|++.. +|||.|.+|++.... .|.+|+...+..+..+. ...+....|++. ..-...|...... .+
T Consensus 34 p~~~~--~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~~--~~~V~~~~fSP~--------~kYL~tw~~~pi~---~p 97 (561)
T COG5354 34 PVAYV--SESPLGTYLFSEHAA-GVECWGGPSKAKLVRFR--HPDVKYLDFSPN--------EKYLVTWSREPII---EP 97 (561)
T ss_pred chhhe--eecCcchheehhhcc-ceEEccccchhheeeee--cCCceecccCcc--------cceeeeeccCCcc---Ch
Confidence 45444 999999999987765 48999988777665554 223444444443 1111222211100 00
Q ss_pred CCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCC--eE-EEEEecCCCEEEEEecCCcEEEEECCCCce-eEEEecC-C
Q 007234 85 GSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGG--VS-AISFATHGSCIYSAGADGMVCEIDPLTGSL-LGKFRAS-T 159 (612)
Q Consensus 85 ~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~--V~-~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~-~~~~~~~-~ 159 (612)
..-+.=-+.+..+.+||+.+|..+..+.. -..+ .+ -+.|+.+.++++=- ....++++++ ++.. ...+..- .
T Consensus 98 -e~e~sp~~~~n~~~vwd~~sg~iv~sf~~-~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~ 173 (561)
T COG5354 98 -EIEISPFTSKNNVFVWDIASGMIVFSFNG-ISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLRP 173 (561)
T ss_pred -hhccCCccccCceeEEeccCceeEeeccc-cCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccccCchhhccc
Confidence 00011112223699999999999877743 3333 44 67888887765433 2345889987 3321 1112222 2
Q ss_pred CCeeEEEECCCCC--EEEEeC-------CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEc----------C
Q 007234 160 KGISCMAVSSDGK--MLATAA-------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV----------G 220 (612)
Q Consensus 160 ~~v~~l~~spdg~--~l~~~~-------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~----------~ 220 (612)
..+....|+|.|+ .|+.=. +.+++|.+..+..+.+-.-....=..+.|.+.|++++.-.. +
T Consensus 174 ~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfg 253 (561)
T COG5354 174 VGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFG 253 (561)
T ss_pred cceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceec
Confidence 5788888998643 344322 68999998877665443222222345788888887664321 1
Q ss_pred CCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEe--cCCcEEEEECCCcceecccCCceeEee
Q 007234 221 ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS--ETGVCYIWYGQNIEELRNTKATKILSS 298 (612)
Q Consensus 221 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~ 298 (612)
...++++++...... +. . .....+.-.+|. |.++.+++.+ .+-.+.++|++..-.....+..+..
T Consensus 254 esnLyl~~~~e~~i~----V~-~-~~~~pVhdf~W~-----p~S~~F~vi~g~~pa~~s~~~lr~Nl~~~~Pe~~rNT-- 320 (561)
T COG5354 254 ESNLYLLRITERSIP----VE-K-DLKDPVHDFTWE-----PLSSRFAVISGYMPASVSVFDLRGNLRFYFPEQKRNT-- 320 (561)
T ss_pred cceEEEEeecccccc----ee-c-cccccceeeeec-----ccCCceeEEecccccceeecccccceEEecCCccccc--
Confidence 235677777644322 11 1 223445556676 8888777766 5778899998766222222222222
Q ss_pred cccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccc------ccee
Q 007234 299 SEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQ------SLLK 372 (612)
Q Consensus 299 ~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~------s~d~ 372 (612)
..|+|..+ +|+.++++.. .|.+.+.+....+.+...+.+- ...-+.|||||.|+ .+. -.|.
T Consensus 321 --~~fsp~~r----~il~agF~nl----~gni~i~~~~~rf~~~~~~~~~--n~s~~~wspd~qF~-~~~~ts~k~~~Dn 387 (561)
T COG5354 321 --IFFSPHER----YILFAGFDNL----QGNIEIFDPAGRFKVAGAFNGL--NTSYCDWSPDGQFY-DTDTTSEKLRVDN 387 (561)
T ss_pred --ccccCccc----EEEEecCCcc----ccceEEeccCCceEEEEEeecC--CceEeeccCCceEE-EecCCCcccccCc
Confidence 23788877 8888887752 2333333322223222222222 23456699999987 443 2588
Q ss_pred eecceeeec
Q 007234 373 SKRGRYVQN 381 (612)
Q Consensus 373 ~~~~w~~~~ 381 (612)
++++|++..
T Consensus 388 ~i~l~~v~g 396 (561)
T COG5354 388 SIKLWDVYG 396 (561)
T ss_pred ceEEEEecC
Confidence 999999854
No 263
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.07 E-value=1.9e-07 Score=93.37 Aligned_cols=244 Identities=14% Similarity=0.142 Sum_probs=142.3
Q ss_pred EEcCCCCEEEEEeC----------CCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234 12 SFSPALDYFAICSG----------DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (612)
Q Consensus 12 ~fspdg~~las~s~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (612)
.+||||+.|+.+.. ++.|.|||..+++.+.++.....+... .......+. .+++
T Consensus 52 ~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~-----------~~~~~~~~~-ls~d---- 115 (352)
T TIGR02658 52 VVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFL-----------VGTYPWMTS-LTPD---- 115 (352)
T ss_pred eECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhh-----------ccCccceEE-ECCC----
Confidence 39999998876654 789999999999999888632211000 000000111 1111
Q ss_pred cccCCcEEEEEEC--CCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCC-Cce-eEE---
Q 007234 82 RKLGSSLLVLGTG--GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT-GSL-LGK--- 154 (612)
Q Consensus 82 ~~~~~~~l~~gs~--~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~-~~~-~~~--- 154 (612)
++++++... +..|.+.|+.+++.+.++..+ +...-...+++ ..+ +-+.||......+.+ |+. ...
T Consensus 116 ----gk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp--~~~~vy~t~e~-~~~-~~~~Dg~~~~v~~d~~g~~~~~~~~v 187 (352)
T TIGR02658 116 ----NKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVP--DCYHIFPTAND-TFF-MHCRDGSLAKVGYGTKGNPKIKPTEV 187 (352)
T ss_pred ----CCEEEEecCCCCCEEEEEECCCCcEEEEEeCC--CCcEEEEecCC-ccE-EEeecCceEEEEecCCCceEEeeeee
Confidence 777887774 566999999999998777431 21111222222 212 223455444433221 221 111
Q ss_pred EecCCCCe-eEEEECC-CCCEEEEeC-CeEEEEEcCCC-----eeEEEEec-------CCCCEEEEEEeeCCcEEEEEEc
Q 007234 155 FRASTKGI-SCMAVSS-DGKMLATAA-GQLKTFNCSDH-----KKMQKFSG-------HPGAVRFMTFSDNGKYVLSSAV 219 (612)
Q Consensus 155 ~~~~~~~v-~~l~~sp-dg~~l~~~~-g~i~lwd~~~~-----~~~~~~~~-------h~~~v~~l~~sp~~~~l~s~s~ 219 (612)
|.....++ ..-.|.+ +|+++.+.. |+|++.|+... +....+.. ..+.+.-++++|+++.++....
T Consensus 188 f~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~ 267 (352)
T TIGR02658 188 FHPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLAD 267 (352)
T ss_pred ecCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEec
Confidence 11101000 0013455 898888877 99999996443 33333221 2334455999999998887431
Q ss_pred ---------CCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCc-EEEEEe-cCCcEEEEECCCcceec
Q 007234 220 ---------GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGL-YVLAIS-ETGVCYIWYGQNIEELR 288 (612)
Q Consensus 220 ---------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~t~s-~dg~i~iwd~~~~~~~~ 288 (612)
..+.|.++|..+.+.. ..+.-. .....+.++ +|++ +|++.+ .++.|.++|..+++.++
T Consensus 268 ~~~~~thk~~~~~V~ViD~~t~kvi-----~~i~vG-~~~~~iavS-----~Dgkp~lyvtn~~s~~VsViD~~t~k~i~ 336 (352)
T TIGR02658 268 QRAKWTHKTASRFLFVVDAKTGKRL-----RKIELG-HEIDSINVS-----QDAKPLLYALSTGDKTLYIFDAETGKELS 336 (352)
T ss_pred CCccccccCCCCEEEEEECCCCeEE-----EEEeCC-CceeeEEEC-----CCCCeEEEEeCCCCCcEEEEECcCCeEEe
Confidence 1257999999888744 222222 233445676 9999 888776 57899999999999887
Q ss_pred cc
Q 007234 289 NT 290 (612)
Q Consensus 289 ~~ 290 (612)
..
T Consensus 337 ~i 338 (352)
T TIGR02658 337 SV 338 (352)
T ss_pred ee
Confidence 65
No 264
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.05 E-value=1.1e-09 Score=122.73 Aligned_cols=182 Identities=21% Similarity=0.344 Sum_probs=139.9
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccC-CccccccccccccccccccceeEEEeeecccccccccCCcE
Q 007234 10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIA-STETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (612)
Q Consensus 10 ~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (612)
++.=+|...+.++|+.||.|++|.+..++.+..++..+ ..+....|+.. |+.
T Consensus 2213 r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~q---------------------------Gnk 2265 (2439)
T KOG1064|consen 2213 RMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQ---------------------------GNK 2265 (2439)
T ss_pred eecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhccc---------------------------CCc
Confidence 34667778899999999999999999998887775332 33444445544 778
Q ss_pred EEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEe---cCCcEEEEECCCC---ceeEEEecCCCCe
Q 007234 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG---ADGMVCEIDPLTG---SLLGKFRASTKGI 162 (612)
Q Consensus 89 l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s---~dg~v~iwd~~~~---~~~~~~~~~~~~v 162 (612)
+.++..||.+.+|.+. .+.. .-.+.|.....++.|-. ..+++++ .++.+.+||..-. ..+. ..|.+++
T Consensus 2266 ~~i~d~dg~l~l~q~~-pk~~-~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~ga 2339 (2439)
T KOG1064|consen 2266 FGIVDGDGDLSLWQAS-PKPY-TSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGA 2339 (2439)
T ss_pred eeeeccCCceeecccC-Ccce-eccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--eecCCCc
Confidence 8999999999999987 3332 22357999999999975 5677765 5788999996432 2333 7789999
Q ss_pred eEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccc
Q 007234 163 SCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ 235 (612)
Q Consensus 163 ~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~ 235 (612)
+++++.|..+++++|+ |.|++||++..+.+..++. +. ...++++++ ..|.++||++......
T Consensus 2340 T~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~s-s~g~ikIw~~s~~~ll 2403 (2439)
T KOG1064|consen 2340 TVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGS-SEGNIKIWRLSEFGLL 2403 (2439)
T ss_pred eEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccC-cccceEEEEccccchh
Confidence 9999999999999999 9999999998877666553 33 455778776 6899999999887543
No 265
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.04 E-value=1.8e-07 Score=92.26 Aligned_cols=173 Identities=17% Similarity=0.136 Sum_probs=127.3
Q ss_pred EcC-CCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEE
Q 007234 13 FSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL 91 (612)
Q Consensus 13 fsp-dg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~ 91 (612)
|++ +|+++|..|. |...|.+.-.+-.++.- +.+.+.-..+..+ ++-++.
T Consensus 327 fa~~~Gd~ia~VSR-GkaFi~~~~~~~~iqv~--~~~~VrY~r~~~~---------------------------~e~~vi 376 (668)
T COG4946 327 FAVVNGDYIALVSR-GKAFIMRPWDGYSIQVG--KKGGVRYRRIQVD---------------------------PEGDVI 376 (668)
T ss_pred hccCCCcEEEEEec-CcEEEECCCCCeeEEcC--CCCceEEEEEccC---------------------------CcceEE
Confidence 555 6889998885 57777777666555431 2221211111111 456899
Q ss_pred EECCCc-EEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEEEECCC
Q 007234 92 GTGGGD-VLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSD 170 (612)
Q Consensus 92 gs~~g~-I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~spd 170 (612)
|+.||+ +-|||..+++... + .+.-+.|.++..+|+|+.++.+.....+.+.|+.+|.....=+...+-|+...|||+
T Consensus 377 gt~dgD~l~iyd~~~~e~kr-~-e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~n 454 (668)
T COG4946 377 GTNDGDKLGIYDKDGGEVKR-I-EKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPN 454 (668)
T ss_pred eccCCceEEEEecCCceEEE-e-eCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCC
Confidence 999995 9999999998753 3 346688999999999999999988889999999999765554545668999999999
Q ss_pred CCEEEEeC------CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEE
Q 007234 171 GKMLATAA------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSA 218 (612)
Q Consensus 171 g~~l~~~~------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s 218 (612)
++++|-+- ..|+++|+.+++....- ...+.=.+-+|.||+++|..-+
T Consensus 455 sr~iAYafP~gy~tq~Iklydm~~~Kiy~vT-T~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 455 SRWIAYAFPEGYYTQSIKLYDMDGGKIYDVT-TPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred ceeEEEecCcceeeeeEEEEecCCCeEEEec-CCcccccCcccCCCCcEEEEEe
Confidence 99999875 58999999998865543 2334445678999999887654
No 266
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.03 E-value=3.3e-08 Score=99.60 Aligned_cols=198 Identities=19% Similarity=0.340 Sum_probs=136.4
Q ss_pred CcccceeEEEEcCCCC--EEEE-----EeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeee
Q 007234 3 SSNIRDILTSFSPALD--YFAI-----CSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLS 75 (612)
Q Consensus 3 s~~V~~l~~~fspdg~--~las-----~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~ 75 (612)
.+.|..+ .+||.+. .+|+ .|.-+.|+||...-+.... .+.+. .....+...+.|..
T Consensus 165 ~~~i~~f--~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~-------~~a~k--------sFFkadkvqm~WN~ 227 (566)
T KOG2315|consen 165 VSGITML--SLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQ-------PVANK--------SFFKADKVQMKWNK 227 (566)
T ss_pred ccceeeE--EecCCCCCceEEEEccCCCCCCcEEEEeccccccccc-------hhhhc--------cccccceeEEEecc
Confidence 3456556 7888643 4443 2445678898765221111 11111 22234566778876
Q ss_pred cccccccccCCcEEEEEECC-----------CcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEE--ecCCcEE
Q 007234 76 VDRKKKRKLGSSLLVLGTGG-----------GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSA--GADGMVC 142 (612)
Q Consensus 76 ~~~~~~~~~~~~~l~~gs~~-----------g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~--s~dg~v~ 142 (612)
-. ..+|++++.+ .++++++++...+...+. ..++|.++.|+|+++-|+++ -.--++.
T Consensus 228 ~g--------t~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~--k~GPVhdv~W~~s~~EF~VvyGfMPAkvt 297 (566)
T KOG2315|consen 228 LG--------TALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL--KEGPVHDVTWSPSGREFAVVYGFMPAKVT 297 (566)
T ss_pred CC--------ceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC--CCCCceEEEECCCCCEEEEEEecccceEE
Confidence 54 4556665542 238888888556655553 57999999999999876665 3556899
Q ss_pred EEECCCCceeEEEecCCCCeeEEEECCCCCEEEEeC-----CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEE
Q 007234 143 EIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSS 217 (612)
Q Consensus 143 iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~-----g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~ 217 (612)
++|++ +.++..+. +++=+++-|+|.|++++.++ |.+-+||+.+.+++.++..-. -+-+.|+|||.+++++
T Consensus 298 ifnlr-~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~--tt~~eW~PdGe~flTA 372 (566)
T KOG2315|consen 298 IFNLR-GKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN--TTVFEWSPDGEYFLTA 372 (566)
T ss_pred EEcCC-CCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCC--ceEEEEcCCCcEEEEE
Confidence 99974 66666654 56668899999999999887 799999999998888886443 3557999999999998
Q ss_pred EcC-----CCeEEEEEcCCC
Q 007234 218 AVG-----ERYIALWRTDGV 232 (612)
Q Consensus 218 s~~-----d~~i~vwd~~~~ 232 (612)
... |+.++||+....
T Consensus 373 TTaPRlrvdNg~KiwhytG~ 392 (566)
T KOG2315|consen 373 TTAPRLRVDNGIKIWHYTGS 392 (566)
T ss_pred eccccEEecCCeEEEEecCc
Confidence 743 567999998665
No 267
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.02 E-value=5.2e-08 Score=98.93 Aligned_cols=190 Identities=13% Similarity=0.145 Sum_probs=147.6
Q ss_pred CcEEEEEECCCcEEEEEcCCCeEEEEeccC--CCCCeEEEEEe------c--------------CCCEEEEEecCCcEEE
Q 007234 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDC--HPGGVSAISFA------T--------------HGSCIYSAGADGMVCE 143 (612)
Q Consensus 86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~--h~~~V~~l~~s------p--------------~~~~l~s~s~dg~v~i 143 (612)
..++|..+.||.+++|+...++....+.+. -++..++..|. | +...++-|...|.|.+
T Consensus 5 ~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ 84 (541)
T KOG4547|consen 5 LDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLL 84 (541)
T ss_pred hheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEE
Confidence 678999999999999999999887666421 13444555542 1 1234667778899999
Q ss_pred EECCCCceeEEEe--cCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEc
Q 007234 144 IDPLTGSLLGKFR--ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV 219 (612)
Q Consensus 144 wd~~~~~~~~~~~--~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~ 219 (612)
+++..|+....+. .|.+.|.++.++.+-..+.+++ +.+..|+.+..+.++.+.+....+.+++.+|||..+++++
T Consensus 85 ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as- 163 (541)
T KOG4547|consen 85 YSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS- 163 (541)
T ss_pred EEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc-
Confidence 9999999988876 4778999999999888898887 7999999999999999999999999999999999988764
Q ss_pred CCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEE-ecCCcEEEEECCC
Q 007234 220 GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAI-SETGVCYIWYGQN 283 (612)
Q Consensus 220 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~-s~dg~i~iwd~~~ 283 (612)
+.|++||+++.+ .+..+.++...++++.|....---.|.+++++ ..+.-|.+|-...
T Consensus 164 --~~ik~~~~~~ke-----vv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 164 --RQIKVLDIETKE-----VVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred --ceEEEEEccCce-----EEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 789999999987 44677788888888888621000126666665 4466778886443
No 268
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.99 E-value=1.1e-07 Score=98.84 Aligned_cols=226 Identities=13% Similarity=0.124 Sum_probs=140.1
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEECC
Q 007234 16 ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGG 95 (612)
Q Consensus 16 dg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~ 95 (612)
++..++.++.+|.+..+|..+|+.+........ .++.+ . .. +..+++++.+
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~-----~~~~p------------~----v~--------~~~v~v~~~~ 154 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSE-----VLSPP------------L----VA--------NGLVVVRTND 154 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccCce-----eecCC------------E----EE--------CCEEEEECCC
Confidence 456777888899999999999998876542111 00000 0 00 4567888899
Q ss_pred CcEEEEEcCCCeEEEEeccCCCCCe-----EEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCC----C-----
Q 007234 96 GDVLALAVSAGQLKWRLSDCHPGGV-----SAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK----G----- 161 (612)
Q Consensus 96 g~I~vwd~~~~~~~~~~~~~h~~~V-----~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~----~----- 161 (612)
|.+..||..+|+.+++.... ...+ .+.... +..++.++.++.+..+|.++|+.+........ .
T Consensus 155 g~l~a~d~~tG~~~W~~~~~-~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~ 231 (377)
T TIGR03300 155 GRLTALDAATGERLWTYSRV-TPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLV 231 (377)
T ss_pred CeEEEEEcCCCceeeEEccC-CCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhh
Confidence 99999999999998876421 1111 111121 34678888899999999999987654332100 0
Q ss_pred -e-eEEEECCCCCEEEEeC-CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccce
Q 007234 162 -I-SCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS 238 (612)
Q Consensus 162 -v-~~l~~spdg~~l~~~~-g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~ 238 (612)
+ .+..+. ++..++++. |.++.||.++++.+..... .. ..... .++..++.++ .+|.+..+|..+++..
T Consensus 232 ~~~~~p~~~-~~~vy~~~~~g~l~a~d~~tG~~~W~~~~-~~-~~~p~--~~~~~vyv~~-~~G~l~~~d~~tG~~~--- 302 (377)
T TIGR03300 232 DVDGDPVVD-GGQVYAVSYQGRVAALDLRSGRVLWKRDA-SS-YQGPA--VDDNRLYVTD-ADGVVVALDRRSGSEL--- 302 (377)
T ss_pred ccCCccEEE-CCEEEEEEcCCEEEEEECCCCcEEEeecc-CC-ccCce--EeCCEEEEEC-CCCeEEEEECCCCcEE---
Confidence 0 111121 343333333 8999999999987766542 11 11222 2355666665 6999999999888643
Q ss_pred eeEeecC-CceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccC
Q 007234 239 CVLAMEH-PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK 291 (612)
Q Consensus 239 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~ 291 (612)
..... ......... ..+..+++++.+|.|+++|..+++.+...+
T Consensus 303 --W~~~~~~~~~~ssp~-------i~g~~l~~~~~~G~l~~~d~~tG~~~~~~~ 347 (377)
T TIGR03300 303 --WKNDELKYRQLTAPA-------VVGGYLVVGDFEGYLHWLSREDGSFVARLK 347 (377)
T ss_pred --EccccccCCccccCE-------EECCEEEEEeCCCEEEEEECCCCCEEEEEE
Confidence 11111 111111111 134688899999999999999998876544
No 269
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.97 E-value=1.9e-07 Score=93.88 Aligned_cols=305 Identities=11% Similarity=0.092 Sum_probs=179.6
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEE
Q 007234 10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (612)
Q Consensus 10 ~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (612)
-+.|||-|.||++--..| |.+|--.+-..++.|.. ..+.-+.|++. .++|
T Consensus 215 yv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~H--p~Vq~idfSP~---------------------------EkYL 264 (698)
T KOG2314|consen 215 YVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFYH--PGVQFIDFSPN---------------------------EKYL 264 (698)
T ss_pred eEEecCCceEEEEEeccc-eeeecCccHHHHHhccC--CCceeeecCCc---------------------------cceE
Confidence 359999999999988776 68997666555555531 12333333333 3344
Q ss_pred EEEE----------CCC-cEEEEEcCCCeEEEEeccC-CCCCe-EEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEe
Q 007234 90 VLGT----------GGG-DVLALAVSAGQLKWRLSDC-HPGGV-SAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR 156 (612)
Q Consensus 90 ~~gs----------~~g-~I~vwd~~~~~~~~~~~~~-h~~~V-~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~ 156 (612)
++-+ .+| .++|||+.+|.....+..- ....+ .-+.||.|+++++--.. .+|.+++..+..++..-.
T Consensus 265 VT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Ks 343 (698)
T KOG2314|consen 265 VTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKS 343 (698)
T ss_pred EEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccc
Confidence 4332 233 3999999999987666321 11222 34689999998887655 568999977654443323
Q ss_pred cCCCCeeEEEECCCCCEEEEeC-------CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEc---------C
Q 007234 157 ASTKGISCMAVSSDGKMLATAA-------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV---------G 220 (612)
Q Consensus 157 ~~~~~v~~l~~spdg~~l~~~~-------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~---------~ 220 (612)
-...+|....|+|.+.+||-=. ..+.+..+.+++.+++-.-|.-.=..+.|-.+|.+|+.--. .
T Consensus 344 lki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~ 423 (698)
T KOG2314|consen 344 LKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQ 423 (698)
T ss_pred cCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccce
Confidence 3346788899999999988654 36778888787777665544433344667777877765320 0
Q ss_pred CCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEec---CCcEEEEECCC-cc---eecccCCc
Q 007234 221 ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE---TGVCYIWYGQN-IE---ELRNTKAT 293 (612)
Q Consensus 221 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~---dg~i~iwd~~~-~~---~~~~~~~~ 293 (612)
-..+.|+.++..... +...+-...++. .+|. |.|..+++.+. ..++.+|.+++ .. .+..+..
T Consensus 424 f~n~eIfrireKdIp----ve~velke~vi~-FaWE-----P~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk- 492 (698)
T KOG2314|consen 424 FSNLEIFRIREKDIP----VEVVELKESVIA-FAWE-----PHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK- 492 (698)
T ss_pred EeeEEEEEeeccCCC----ceeeecchheee-eeec-----cCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc-
Confidence 113455666554422 233333333433 3343 88888777654 45899998874 22 2222222
Q ss_pred eeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEee-ccCCCeEEEEecCCCceEecccc
Q 007234 294 KILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKIL-VNSGEDINLNCSQDGVLLPMSQS 369 (612)
Q Consensus 294 ~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~-~h~~~v~~l~~S~dg~~l~~s~s 369 (612)
..+....++|.|+ .++.+..-+ -.|.+-..+-.. ......-. .|. ..+.+-|.|.|+|+ +++|
T Consensus 493 --~~~N~vfwsPkG~----fvvva~l~s----~~g~l~F~D~~~-a~~k~~~~~eh~-~at~veWDPtGRYv-vT~s 556 (698)
T KOG2314|consen 493 --KFANTVFWSPKGR----FVVVAALVS----RRGDLEFYDTDY-ADLKDTASPEHF-AATEVEWDPTGRYV-VTSS 556 (698)
T ss_pred --cccceEEEcCCCc----EEEEEEecc----cccceEEEecch-hhhhhccCcccc-ccccceECCCCCEE-EEee
Confidence 2223334788888 666666543 122222222111 11111111 233 56778899999999 7766
No 270
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.97 E-value=4.5e-09 Score=118.07 Aligned_cols=180 Identities=16% Similarity=0.203 Sum_probs=145.4
Q ss_pred CcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEE
Q 007234 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCM 165 (612)
Q Consensus 86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l 165 (612)
..+.++|+.||.|++|....++.+..+...-.+.|+.+.|+.+|+.+..+..||.+.+|... .++....+.|....+..
T Consensus 2220 ~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df 2298 (2439)
T KOG1064|consen 2220 DPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDF 2298 (2439)
T ss_pred CceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-CcceeccccCCccccce
Confidence 56789999999999999999888766655555899999999999999999999999999975 77777888888888888
Q ss_pred EECCCCCEEEEeC-----CeEEEEEcCCC---eeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccc
Q 007234 166 AVSSDGKMLATAA-----GQLKTFNCSDH---KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA 237 (612)
Q Consensus 166 ~~spdg~~l~~~~-----g~i~lwd~~~~---~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~ 237 (612)
.|-. ..+++++ +.+.+||.--. ..+. ..|.+.++++++.|..+.|++|| .+|.|++||++..+..
T Consensus 2299 ~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisgg-r~G~v~l~D~rqrql~-- 2371 (2439)
T KOG1064|consen 2299 RFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGG-RKGEVCLFDIRQRQLR-- 2371 (2439)
T ss_pred eeee--hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecC-CcCcEEEeehHHHHHH--
Confidence 8875 5666665 68999996422 2233 78999999999999999999998 7999999999887644
Q ss_pred eeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccC
Q 007234 238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK 291 (612)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~ 291 (612)
|+-.. . ....++++++..|.|+||++.....+...+
T Consensus 2372 -------h~~~~-----~------~~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2372 -------HTFQA-----L------DTREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred -------HHhhh-----h------hhhheeeccCcccceEEEEccccchhhcCc
Confidence 21111 1 234789999999999999998877665443
No 271
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.96 E-value=8.2e-08 Score=89.33 Aligned_cols=199 Identities=13% Similarity=0.141 Sum_probs=127.0
Q ss_pred eeEEEeeecccccccccCCcEEEEEECCCcEEEEEcCCCeEEE-EeccCCCCCeEEEEEec-CCCEEEEEecCCcEEEEE
Q 007234 68 YTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKW-RLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEID 145 (612)
Q Consensus 68 ~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~-~~~~~h~~~V~~l~~sp-~~~~l~s~s~dg~v~iwd 145 (612)
.-++.|.+. +..++++..+|.+.+-+........ +..++|.-.++...|+. +.+.+++||.|+.+..||
T Consensus 124 ~lslD~~~~---------~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D 194 (339)
T KOG0280|consen 124 ALSLDISTS---------GTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWD 194 (339)
T ss_pred eeEEEeecc---------CceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEE
Confidence 445667665 5669999999998855544443321 24478999999999976 446799999999999999
Q ss_pred CC-CCceeEE-EecCCCCeeEEEECC-CCCEEEEeC--CeEEEEEcCC-CeeEEEEecCCCCEEEEEEeeCCc-EEEEEE
Q 007234 146 PL-TGSLLGK-FRASTKGISCMAVSS-DGKMLATAA--GQLKTFNCSD-HKKMQKFSGHPGAVRFMTFSDNGK-YVLSSA 218 (612)
Q Consensus 146 ~~-~~~~~~~-~~~~~~~v~~l~~sp-dg~~l~~~~--g~i~lwd~~~-~~~~~~~~~h~~~v~~l~~sp~~~-~l~s~s 218 (612)
++ .++.+.. -+.|..+|.+|.-+| .+.++++|+ ..|++||.++ ++++..-. -.+.|..+..+|.-. .++.++
T Consensus 195 ~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~C 273 (339)
T KOG0280|consen 195 IRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAAC 273 (339)
T ss_pred ecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHH
Confidence 98 3333333 456788999999886 678999999 7999999984 56554432 347899999998543 222333
Q ss_pred cCCCeEEEEEcCCCccccceeeEee-c-CCceeEEeEEecCCccCCCCcEEEEEec-CCcEE-EEECCCc
Q 007234 219 VGERYIALWRTDGVKKQSASCVLAM-E-HPAVFMDCRCIDNGGVDDAGLYVLAISE-TGVCY-IWYGQNI 284 (612)
Q Consensus 219 ~~d~~i~vwd~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~l~t~s~-dg~i~-iwd~~~~ 284 (612)
...| .+|-+...+...- ..++.. . |.+.... ..+. ....+|++++. |+.|+ +|-.-++
T Consensus 274 Mh~G-~ki~~~~~~~~e~-~~~~~s~~~hdSl~YG-~DWd-----~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 274 MHNG-AKILDSSDKVLEF-QIVLPSDKIHDSLCYG-GDWD-----SKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred HhcC-ceEEEecccccch-heeeeccccccceeec-cccc-----cccceeeeeeccccceeeeeeeccC
Confidence 3444 5666665543220 011111 1 2222221 1121 23356888764 77755 7754444
No 272
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.96 E-value=1e-06 Score=85.15 Aligned_cols=218 Identities=19% Similarity=0.224 Sum_probs=136.4
Q ss_pred CCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEECCCcEEEEEcCC
Q 007234 26 DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSA 105 (612)
Q Consensus 26 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~ 105 (612)
+|+|..||..+|+.+....... ... . .......+ +..+++++.++.+..||..+
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~-~~~---------------~--~~~~~~~~--------~~~v~~~~~~~~l~~~d~~t 55 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGP-GIG---------------G--PVATAVPD--------GGRVYVASGDGNLYALDAKT 55 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSS-SCS---------------S--EEETEEEE--------TTEEEEEETTSEEEEEETTT
T ss_pred CCEEEEEECCCCCEEEEEECCC-CCC---------------C--ccceEEEe--------CCEEEEEcCCCEEEEEECCC
Confidence 6899999999999998875211 000 0 00000001 67788889999999999999
Q ss_pred CeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEE-ecCCC---CeeEEEECCCCCEEEEeC--C
Q 007234 106 GQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKF-RASTK---GISCMAVSSDGKMLATAA--G 179 (612)
Q Consensus 106 ~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~-~~~~~---~v~~l~~spdg~~l~~~~--g 179 (612)
|+.+++... ...+.... ..++..++.++.++.++.+|..+|+.+... ..... .........++..++++. +
T Consensus 56 G~~~W~~~~--~~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 132 (238)
T PF13360_consen 56 GKVLWRFDL--PGPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSG 132 (238)
T ss_dssp SEEEEEEEC--SSCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCS
T ss_pred CCEEEEeec--ccccccee-eecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccC
Confidence 999888753 22221111 224556777778899999999999998884 33211 112222222355555554 8
Q ss_pred eEEEEEcCCCeeEEEEecCCCC----------EEEEEEeeCCcEEEEEEcCCCe-EEEEEcCCCccccceeeEeecCCce
Q 007234 180 QLKTFNCSDHKKMQKFSGHPGA----------VRFMTFSDNGKYVLSSAVGERY-IALWRTDGVKKQSASCVLAMEHPAV 248 (612)
Q Consensus 180 ~i~lwd~~~~~~~~~~~~h~~~----------v~~l~~sp~~~~l~s~s~~d~~-i~vwd~~~~~~~~~~~~~~~~~~~~ 248 (612)
.|..+|.++|+.+.....+... +..-....++ .++.++ .++. +.+ |+.+++.. .... ...
T Consensus 133 ~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~-~~g~~~~~-d~~tg~~~-----w~~~-~~~ 203 (238)
T PF13360_consen 133 KLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSS-GDGRVVAV-DLATGEKL-----WSKP-ISG 203 (238)
T ss_dssp EEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEEC-CTSSEEEE-ETTTTEEE-----EEEC-SS-
T ss_pred cEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEc-CCCeEEEE-ECCCCCEE-----EEec-CCC
Confidence 9999999999998888764422 1122222345 555554 4664 555 99998733 2222 122
Q ss_pred eEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceec
Q 007234 249 FMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR 288 (612)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~ 288 (612)
.... .. .++..|+.++.+|.|..||+.+|+.+.
T Consensus 204 ~~~~--~~-----~~~~~l~~~~~~~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 204 IYSL--PS-----VDGGTLYVTSSDGRLYALDLKTGKVVW 236 (238)
T ss_dssp ECEC--EE-----CCCTEEEEEETTTEEEEEETTTTEEEE
T ss_pred ccCC--ce-----eeCCEEEEEeCCCEEEEEECCCCCEEe
Confidence 1111 12 566778888899999999999998764
No 273
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.90 E-value=1.5e-06 Score=98.67 Aligned_cols=235 Identities=13% Similarity=0.203 Sum_probs=151.4
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEE----ECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccccc
Q 007234 9 ILTSFSPALDYFAICSGDARIKIW----DTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (612)
Q Consensus 9 l~~~fspdg~~las~s~dg~i~iw----d~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (612)
+.+.|-++..-++.+..+|.|.+. |..+...- . .|.......++.|.|.
T Consensus 79 vs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E-~------------------VG~vd~GI~a~~WSPD-------- 131 (928)
T PF04762_consen 79 VSFQYLADSESLCIALASGDIILVREDPDPDEDEIE-I------------------VGSVDSGILAASWSPD-------- 131 (928)
T ss_pred EEEEeccCCCcEEEEECCceEEEEEccCCCCCceeE-E------------------EEEEcCcEEEEEECCC--------
Confidence 566899999989999999999988 54443321 1 1344556778888776
Q ss_pred CCcEEEEEECCCcEEEEEcC----C---------C----------eEEEEe------------cc--------C---CCC
Q 007234 85 GSSLLVLGTGGGDVLALAVS----A---------G----------QLKWRL------------SD--------C---HPG 118 (612)
Q Consensus 85 ~~~~l~~gs~~g~I~vwd~~----~---------~----------~~~~~~------------~~--------~---h~~ 118 (612)
+.++++.+.+|++.+.+-. . | +...++ .. + +..
T Consensus 132 -~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd 210 (928)
T PF04762_consen 132 -EELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDD 210 (928)
T ss_pred -cCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCC
Confidence 7889999999997775321 0 0 000000 00 0 223
Q ss_pred CeEEEEEecCCCEEEEEec---C---CcEEEEECCCCceeEEEecCCCCeeEEEECCCCCEEEEeC-----CeEEEEEcC
Q 007234 119 GVSAISFATHGSCIYSAGA---D---GMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-----GQLKTFNCS 187 (612)
Q Consensus 119 ~V~~l~~sp~~~~l~s~s~---d---g~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~-----g~i~lwd~~ 187 (612)
.-..++|..||.+|++.+. . ..+++|+- .|....+-..-.+--.+++|.|.|+++|+.. ..|.+|. +
T Consensus 211 ~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~R-eG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-r 288 (928)
T PF04762_consen 211 GRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSR-EGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-R 288 (928)
T ss_pred CceEEEECCCCcEEEEEEEEcCCCceeEEEEECC-CceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-c
Confidence 4567899999999998874 2 47999994 4766555443333346789999999999876 3566665 4
Q ss_pred CCeeEEEEe----cCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCC
Q 007234 188 DHKKMQKFS----GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDA 263 (612)
Q Consensus 188 ~~~~~~~~~----~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (612)
+|-....|. .....|..+.|++|+..|+..- .|. |++|...+-.--- +....+..... ...+.|++ .+
T Consensus 289 NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~-~~~-vqLWt~~NYHWYL-Kqei~~~~~~~-~~~~~Wdp----e~ 360 (928)
T PF04762_consen 289 NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWL-EDR-VQLWTRSNYHWYL-KQEIRFSSSES-VNFVKWDP----EK 360 (928)
T ss_pred CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEe-cCC-ceEEEeeCCEEEE-EEEEEccCCCC-CCceEECC----CC
Confidence 554444443 3456799999999999998875 454 9999987754220 01111212222 22255652 35
Q ss_pred CcEEEEEecCCcEEEEEC
Q 007234 264 GLYVLAISETGVCYIWYG 281 (612)
Q Consensus 264 ~~~l~t~s~dg~i~iwd~ 281 (612)
...|...+.+|.+..++.
T Consensus 361 p~~L~v~t~~g~~~~~~~ 378 (928)
T PF04762_consen 361 PLRLHVLTSNGQYEIYDF 378 (928)
T ss_pred CCEEEEEecCCcEEEEEE
Confidence 567888888788777654
No 274
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.89 E-value=6.7e-08 Score=91.72 Aligned_cols=196 Identities=10% Similarity=0.193 Sum_probs=135.9
Q ss_pred CcccceeEEEEcCCCCEEEEEeCCCcEEEEECC----CCcEEEEeeccCCccccccccccccccccccceeEEEeeeccc
Q 007234 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTL----KGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDR 78 (612)
Q Consensus 3 s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~----~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~ 78 (612)
+++++.+ .|.+....|+.|-..|++.-+.+. .....+.+..|...+..+.|+.+
T Consensus 68 P~~~~~~--~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~-------------------- 125 (404)
T KOG1409|consen 68 PSPCSAM--EYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLT-------------------- 125 (404)
T ss_pred CCCceEe--eeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCC--------------------
Confidence 4666555 999999999999989998887543 34455566667777777777766
Q ss_pred ccccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEE--CCCCceeEEEe
Q 007234 79 KKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEID--PLTGSLLGKFR 156 (612)
Q Consensus 79 ~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd--~~~~~~~~~~~ 156 (612)
.+.+++.+.|..+.-.-.+.+..+..+.- ....+++.|.-. +.+.|...|.|..-. ...-.++.++.
T Consensus 126 -------~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~--~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~ 194 (404)
T KOG1409|consen 126 -------HEWVLSTGKDKQFAWHCTESGNRLGGYNF--ETPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFN 194 (404)
T ss_pred -------ceeEEEeccccceEEEeeccCCcccceEe--eccCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEc
Confidence 55666666666655544444444322210 111112222111 344444445444433 34456788899
Q ss_pred cCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCee-EEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCC
Q 007234 157 ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKK-MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (612)
Q Consensus 157 ~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~-~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~ 232 (612)
+|.+.+.+++|.|....+.+|. ..+.+||+--++- ..++.+|...|..+...+--+.+++++ .||.|-+|+++..
T Consensus 195 ~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~-edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 195 GHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCG-EDGGIVVWNMNVK 272 (404)
T ss_pred CcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeecc-CCCeEEEEeccce
Confidence 9999999999999999999988 7999999875543 467789999999998888888899987 7999999998643
No 275
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.89 E-value=9.1e-06 Score=78.97 Aligned_cols=189 Identities=19% Similarity=0.206 Sum_probs=125.2
Q ss_pred CcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEe-cCCCEEEEEecCCcEEEEECCCCceeEEEec-----CC
Q 007234 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFA-THGSCIYSAGADGMVCEIDPLTGSLLGKFRA-----ST 159 (612)
Q Consensus 86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~s-p~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~-----~~ 159 (612)
+.++++-...+.|+.|+..++........ ...++.+. +++ .++.+..++ +.++|..+++....... ..
T Consensus 12 g~l~~~D~~~~~i~~~~~~~~~~~~~~~~----~~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~ 85 (246)
T PF08450_consen 12 GRLYWVDIPGGRIYRVDPDTGEVEVIDLP----GPNGMAFDRPDG-RLYVADSGG-IAVVDPDTGKVTVLADLPDGGVPF 85 (246)
T ss_dssp TEEEEEETTTTEEEEEETTTTEEEEEESS----SEEEEEEECTTS-EEEEEETTC-EEEEETTTTEEEEEEEEETTCSCT
T ss_pred CEEEEEEcCCCEEEEEECCCCeEEEEecC----CCceEEEEccCC-EEEEEEcCc-eEEEecCCCcEEEEeeccCCCccc
Confidence 66777777889999999999877532211 27788888 564 566665544 55669988865444432 23
Q ss_pred CCeeEEEECCCCCEEEEeC----------CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEc
Q 007234 160 KGISCMAVSSDGKMLATAA----------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRT 229 (612)
Q Consensus 160 ~~v~~l~~spdg~~l~~~~----------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~ 229 (612)
..++.+++.|+|++.++.. |.|+.++.. ++...... .-...+.|+|+|+++.|+.+.+..+.|..+++
T Consensus 86 ~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~ 163 (246)
T PF08450_consen 86 NRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDL 163 (246)
T ss_dssp EEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETTTTEEEEEEE
T ss_pred CCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeecccccceeEEEec
Confidence 4788999999999777654 247777776 55433333 34557899999999988776667888999998
Q ss_pred CCCcc-cc-ceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceec
Q 007234 230 DGVKK-QS-ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR 288 (612)
Q Consensus 230 ~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~ 288 (612)
..... .. ......+.........+++. .+|++.++....+.|.+++.+ |+.+.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~g~pDG~~vD-----~~G~l~va~~~~~~I~~~~p~-G~~~~ 218 (246)
T PF08450_consen 164 DADGGELSNRRVFIDFPGGPGYPDGLAVD-----SDGNLWVADWGGGRIVVFDPD-GKLLR 218 (246)
T ss_dssp ETTTCCEEEEEEEEE-SSSSCEEEEEEEB-----TTS-EEEEEETTTEEEEEETT-SCEEE
T ss_pred cccccceeeeeeEEEcCCCCcCCCcceEc-----CCCCEEEEEcCCCEEEEECCC-ccEEE
Confidence 75432 11 11222233333346777776 889888887788999999876 66543
No 276
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.83 E-value=9.2e-08 Score=89.47 Aligned_cols=246 Identities=16% Similarity=0.213 Sum_probs=157.0
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCc-----EEEEeeccCCccccccccccccccccccceeEEEeeeccccccccc
Q 007234 10 LTSFSPALDYFAICSGDARIKIWDTLKGQ-----VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (612)
Q Consensus 10 ~~~fspdg~~las~s~dg~i~iwd~~~~~-----~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (612)
++-|...|.|||+|...|+|.+|.-.... ...+|++|..... |- ..-.....+..+.|+.+.+
T Consensus 31 aVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFD---YL---kSleieEKin~I~w~~~t~------ 98 (460)
T COG5170 31 AVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFD---YL---KSLEIEEKINAIEWFDDTG------ 98 (460)
T ss_pred EEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchh---hh---hhccHHHHhhheeeecCCC------
Confidence 44899999999999999999999765332 2333444432211 00 0011123455677877654
Q ss_pred CCcEEEEEECCCcEEEEEcCCCe-------------------------------------EE-----EEeccCCCCCeEE
Q 007234 85 GSSLLVLGTGGGDVLALAVSAGQ-------------------------------------LK-----WRLSDCHPGGVSA 122 (612)
Q Consensus 85 ~~~~l~~gs~~g~I~vwd~~~~~-------------------------------------~~-----~~~~~~h~~~V~~ 122 (612)
...+++.+.+.+|++|.+.... .+ +.....|.--|.+
T Consensus 99 -r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNS 177 (460)
T COG5170 99 -RNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINS 177 (460)
T ss_pred -cceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeee
Confidence 4667888899999999874320 00 0112467777899
Q ss_pred EEEecCCCEEEEEecCCcEEEEECCCCce---eEEEecCC-----CCeeEEEECCCCC--EEEEeC-CeEEEEEcCCCee
Q 007234 123 ISFATHGSCIYSAGADGMVCEIDPLTGSL---LGKFRAST-----KGISCMAVSSDGK--MLATAA-GQLKTFNCSDHKK 191 (612)
Q Consensus 123 l~~sp~~~~l~s~s~dg~v~iwd~~~~~~---~~~~~~~~-----~~v~~l~~spdg~--~l~~~~-g~i~lwd~~~~~~ 191 (612)
++|+.|...++++ .|-.|.+|++..... +..++.|. .-|++..|+|... ++.+.+ |.|++-|++....
T Consensus 178 iS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~al 256 (460)
T COG5170 178 ISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSAL 256 (460)
T ss_pred eeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhh
Confidence 9999998888887 577899999864432 22233333 3578899999654 344555 9999999985422
Q ss_pred EE--------E--------EecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCC---------
Q 007234 192 MQ--------K--------FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP--------- 246 (612)
Q Consensus 192 ~~--------~--------~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~--------- 246 (612)
.. . +.+-...|..+.|+++|+++++-. =-+|++||.+..+.. +.+..-+
T Consensus 257 cdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd--yltvkiwDvnm~k~p----ikTi~~h~~l~~~l~d 330 (460)
T COG5170 257 CDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD--YLTVKIWDVNMAKNP----IKTIPMHCDLMDELND 330 (460)
T ss_pred ccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec--cceEEEEecccccCC----ceeechHHHHHHHHHh
Confidence 11 1 112235678899999999998764 468999999876532 3333211
Q ss_pred ----ceeEE--eEEecCCccCCCCcEEEEEecCCcEEEEE
Q 007234 247 ----AVFMD--CRCIDNGGVDDAGLYVLAISETGVCYIWY 280 (612)
Q Consensus 247 ----~~~~~--~~~~~~~~~~~~~~~l~t~s~dg~i~iwd 280 (612)
..+.. -+.|+ .|.+.+.+|+..+..-+|-
T Consensus 331 ~YEnDaifdkFeisfS-----gd~~~v~sgsy~NNfgiyp 365 (460)
T COG5170 331 VYENDAIFDKFEISFS-----GDDKHVLSGSYSNNFGIYP 365 (460)
T ss_pred hhhccceeeeEEEEec-----CCcccccccccccceeeec
Confidence 11111 12333 7778899999888777774
No 277
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.83 E-value=1.4e-06 Score=87.75 Aligned_cols=277 Identities=13% Similarity=0.158 Sum_probs=165.5
Q ss_pred cceeEEEEcCCCCEEEEEeC-----------CCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEee
Q 007234 6 IRDILTSFSPALDYFAICSG-----------DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWL 74 (612)
Q Consensus 6 V~~l~~~fspdg~~las~s~-----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~ 74 (612)
|.-+ .|||+.+||++-+. ...+.|||+.+|...+.|....++ ...-....|.
T Consensus 252 Vq~i--dfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~---------------~~~WP~frWS 314 (698)
T KOG2314|consen 252 VQFI--DFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSP---------------YLKWPIFRWS 314 (698)
T ss_pred ceee--ecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCC---------------ccccceEEec
Confidence 4444 99999999998653 147999999999999888643211 1122234454
Q ss_pred ecccccccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEec-----CCcEEEEECCCC
Q 007234 75 SVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA-----DGMVCEIDPLTG 149 (612)
Q Consensus 75 ~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~-----dg~v~iwd~~~~ 149 (612)
.. +.++|--.. ..|.||+..+-..+- ...-.-..|..+.|+|.++.|+--.. -..+-+..+.++
T Consensus 315 ~D---------dKy~Arm~~-~sisIyEtpsf~lld-~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~ 383 (698)
T KOG2314|consen 315 HD---------DKYFARMTG-NSISIYETPSFMLLD-KKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSK 383 (698)
T ss_pred cC---------CceeEEecc-ceEEEEecCceeeec-ccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCcc
Confidence 43 445554443 668999887643331 11123467899999999887765432 134666777777
Q ss_pred ceeEEEecCCCCeeEEEECCCCCEEEEeC------------CeEEEEEcCCCee-EEEEecCCCCEEEEEEeeCCcEEEE
Q 007234 150 SLLGKFRASTKGISCMAVSSDGKMLATAA------------GQLKTFNCSDHKK-MQKFSGHPGAVRFMTFSDNGKYVLS 216 (612)
Q Consensus 150 ~~~~~~~~~~~~v~~l~~spdg~~l~~~~------------g~i~lwd~~~~~~-~~~~~~h~~~v~~l~~sp~~~~l~s 216 (612)
+.+++-.-+.-.=..+-|-.+|.+|+.-- ..+.|+.++.... +..+ .-...|...+|-|.|..+++
T Consensus 384 ~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~v-elke~vi~FaWEP~gdkF~v 462 (698)
T KOG2314|consen 384 REIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVV-ELKESVIAFAWEPHGDKFAV 462 (698)
T ss_pred ceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceee-ecchheeeeeeccCCCeEEE
Confidence 77666444333223456777888887532 2455665554432 2222 24567888999999987776
Q ss_pred EEcCC--CeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEe---cCCcEEEEECCCcceecccC
Q 007234 217 SAVGE--RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS---ETGVCYIWYGQNIEELRNTK 291 (612)
Q Consensus 217 ~s~~d--~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s---~dg~i~iwd~~~~~~~~~~~ 291 (612)
.+..+ .++.+|.+++.... ...+..+ .......+.|+ |.|++++.+. ..|.+.++|...........
T Consensus 463 i~g~~~k~tvsfY~~e~~~~~-~~lVk~~--dk~~~N~vfws-----PkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~ 534 (698)
T KOG2314|consen 463 ISGNTVKNTVSFYAVETNIKK-PSLVKEL--DKKFANTVFWS-----PKGRFVVVAALVSRRGDLEFYDTDYADLKDTAS 534 (698)
T ss_pred EEccccccceeEEEeecCCCc-hhhhhhh--cccccceEEEc-----CCCcEEEEEEecccccceEEEecchhhhhhccC
Confidence 55332 47888988743211 1122222 22444567777 9999998875 46899999987533322222
Q ss_pred CceeEeecccccCCCCcccchhhhcccccceec
Q 007234 292 ATKILSSSEDVNSKSQKSATAAIFAAKLQDIVK 324 (612)
Q Consensus 292 ~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~ 324 (612)
+.... .+...+.|.|+ ++.+++.-...+
T Consensus 535 ~eh~~-at~veWDPtGR----YvvT~ss~wrhk 562 (698)
T KOG2314|consen 535 PEHFA-ATEVEWDPTGR----YVVTSSSSWRHK 562 (698)
T ss_pred ccccc-cccceECCCCC----EEEEeeehhhhc
Confidence 22221 22223566776 666655544333
No 278
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.82 E-value=1.3e-08 Score=101.66 Aligned_cols=233 Identities=14% Similarity=0.171 Sum_probs=150.3
Q ss_pred CcccceeEEEEcCCCCEEEEEeCCCcEEEEECCC-------CcEEEEeeccCCccccccccccccccccccceeEEEeee
Q 007234 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLK-------GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLS 75 (612)
Q Consensus 3 s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~-------~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~ 75 (612)
+..||.+ +--.+.+-+++++.|++|++|.++. ..|..+++.|..++.++.|-.+
T Consensus 735 ~~~iRai--~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~----------------- 795 (1034)
T KOG4190|consen 735 QEKIRAI--AAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLAD----------------- 795 (1034)
T ss_pred HHHhHHH--HhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeec-----------------
Confidence 3455555 3333456688999999999998753 3366777777776665555544
Q ss_pred cccccccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccC-CCCCeEEEEEec--CCCEEE-EEecCCcEEEEECCCCce
Q 007234 76 VDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDC-HPGGVSAISFAT--HGSCIY-SAGADGMVCEIDPLTGSL 151 (612)
Q Consensus 76 ~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~-h~~~V~~l~~sp--~~~~l~-s~s~dg~v~iwd~~~~~~ 151 (612)
. -.+++.||-|.+||+-.|..+.+.... ..+.+..+..-+ +...++ .|+...+|+++|.+.++-
T Consensus 796 ----------l--r~i~ScD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~ 863 (1034)
T KOG4190|consen 796 ----------L--RSIASCDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEW 863 (1034)
T ss_pred ----------c--ceeeeccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccc
Confidence 1 246778999999999888876544321 122233333323 333343 447889999999999887
Q ss_pred eEEEecC-----CCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeE
Q 007234 152 LGKFRAS-----TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYI 224 (612)
Q Consensus 152 ~~~~~~~-----~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i 224 (612)
...++.. ..-+.++++.|.|+.++++- |.|.+.|.++|+.+..+..-.-....++ .|..+.++.+. -|.++
T Consensus 864 ~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~sa-ldHsl 941 (1034)
T KOG4190|consen 864 TCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSA-LDHSL 941 (1034)
T ss_pred eeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhc-cccee
Confidence 7776543 34688999999999999885 9999999999998877654443333333 36667777776 58888
Q ss_pred EE-EEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEE
Q 007234 225 AL-WRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY 280 (612)
Q Consensus 225 ~v-wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd 280 (612)
.+ |..-.+... +....+........ .-|.-+++....+.+.+|-
T Consensus 942 aVnWhaldgimh-----~q~kpppepahflq-------svgpSLV~a~~Gn~lgVYa 986 (1034)
T KOG4190|consen 942 AVNWHALDGIMH-----LQDKPPPEPAHFLQ-------SVGPSLVTAQNGNILGVYA 986 (1034)
T ss_pred EeeehhcCCeee-----eccCCCCcchhhhh-------ccCceeEEeccCcEEEEEe
Confidence 88 876665322 22222222111111 1234566666666777774
No 279
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.82 E-value=3.8e-07 Score=95.21 Aligned_cols=245 Identities=15% Similarity=0.132 Sum_probs=163.3
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEE
Q 007234 10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (612)
Q Consensus 10 ~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (612)
++.|+|.| +||.|+. ..|.|-|..+-+.++.+..|...|+.+.|++. ...+.- ..++. -.-+|
T Consensus 20 A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~-~~p~~l-------lS~~~-------~~lli 82 (1062)
T KOG1912|consen 20 AADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPA-PSPRDL-------LSPSS-------SQLLI 82 (1062)
T ss_pred ccccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccC-CCchhc-------cCccc-------cceeE
Confidence 34899988 7888874 47889999999999999888877777777665 111100 00000 03467
Q ss_pred EEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEec---CC-CEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEE
Q 007234 90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT---HG-SCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCM 165 (612)
Q Consensus 90 ~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp---~~-~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l 165 (612)
+++.-.|.|.+||...+..+..+ ..|..++.+++|-+ +. ..|+.-....++.+|+..+|+.+-+.........|+
T Consensus 83 AsaD~~GrIil~d~~~~s~~~~l-~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f 161 (1062)
T KOG1912|consen 83 ASADISGRIILVDFVLASVINWL-SHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCF 161 (1062)
T ss_pred EeccccCcEEEEEehhhhhhhhh-cCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeee
Confidence 88888999999999998887666 46889999999976 33 356666778899999999999998888777788889
Q ss_pred EECC-CCCEEEE-eC-CeEEEEEcC-------CCeeEEEEecCCC-----------------C--------EEEEEEeeC
Q 007234 166 AVSS-DGKMLAT-AA-GQLKTFNCS-------DHKKMQKFSGHPG-----------------A--------VRFMTFSDN 210 (612)
Q Consensus 166 ~~sp-dg~~l~~-~~-g~i~lwd~~-------~~~~~~~~~~h~~-----------------~--------v~~l~~sp~ 210 (612)
.+.| |.+++.. ++ |.+.+-+.- .++.++.-..|.. + ...++|+|.
T Consensus 162 ~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~ 241 (1062)
T KOG1912|consen 162 RVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPH 241 (1062)
T ss_pred eeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChh
Confidence 9998 5555544 44 766666542 1233332223322 0 123567886
Q ss_pred CcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCC-ceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECC
Q 007234 211 GKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP-AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (612)
Q Consensus 211 ~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~ 282 (612)
-+.++... ..+.+.++|++-.... .+..++.. ..++..+.- |....|++...||.+.+|--+
T Consensus 242 ~rn~lfi~-~prellv~dle~~~~l---~vvpier~~akfv~vlP~------~~rd~LfclH~nG~ltirvrk 304 (1062)
T KOG1912|consen 242 WRNILFIT-FPRELLVFDLEYECCL---AVVPIERGGAKFVDVLPD------PRRDALFCLHSNGRLTIRVRK 304 (1062)
T ss_pred hhceEEEE-eccceEEEcchhhcee---EEEEeccCCcceeEeccC------CCcceEEEEecCCeEEEEEee
Confidence 65444444 4788999999876543 22222221 223332211 455679999999999999643
No 280
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.82 E-value=1.7e-06 Score=80.97 Aligned_cols=197 Identities=16% Similarity=0.209 Sum_probs=111.9
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEE
Q 007234 12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL 91 (612)
Q Consensus 12 ~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~ 91 (612)
+||||+.+||.+...|+|+++|+.. ..+..+...... .+..+..+..+.+.......++ ...+++
T Consensus 50 ~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~-----------~~d~~~Aiagl~Fl~~~~s~~w---s~ELlv 114 (282)
T PF15492_consen 50 AWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSF-----------PGDLSDAIAGLIFLEYKKSAQW---SYELLV 114 (282)
T ss_pred EECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCccccc-----------CCccccceeeeEeecccccccc---ceeEEE
Confidence 9999999999999999999999975 444444432111 0122233334444333211100 335677
Q ss_pred EECCCcEEEEEcCCC-----eE--EEEeccCCCCCeEEEEEecCCCEEEEEecCCc-----------EEEEECCCCceeE
Q 007234 92 GTGGGDVLALAVSAG-----QL--KWRLSDCHPGGVSAISFATHGSCIYSAGADGM-----------VCEIDPLTGSLLG 153 (612)
Q Consensus 92 gs~~g~I~vwd~~~~-----~~--~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~-----------v~iwd~~~~~~~~ 153 (612)
-.-.|.++-|-+..+ +. ...+...+...|.++.|+|..+.|+.||.... +..|.+-++.+..
T Consensus 115 i~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyy 194 (282)
T PF15492_consen 115 INYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYY 194 (282)
T ss_pred EeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcE
Confidence 777888777765322 11 12333445789999999999888888764221 2233322222211
Q ss_pred EEecCCCCeeEEEECCCCCEEEEeCCeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCc
Q 007234 154 KFRASTKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (612)
Q Consensus 154 ~~~~~~~~v~~l~~spdg~~l~~~~g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~ 233 (612)
+. ..+. +.-+-....+-.+|.+-+.+...........|..|..||||+.|++.. .+|.|.+|++..-.
T Consensus 195 k~----------v~~~-~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih-~sG~lsLW~iPsL~ 262 (282)
T PF15492_consen 195 KQ----------VTSS-EDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIH-FSGSLSLWEIPSLR 262 (282)
T ss_pred EE----------cccc-CccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEE-cCCeEEEEecCcch
Confidence 10 0111 111111111223333333222222223456799999999999999987 69999999998865
Q ss_pred cc
Q 007234 234 KQ 235 (612)
Q Consensus 234 ~~ 235 (612)
.+
T Consensus 263 ~~ 264 (282)
T PF15492_consen 263 LQ 264 (282)
T ss_pred hh
Confidence 44
No 281
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.82 E-value=1e-05 Score=78.67 Aligned_cols=217 Identities=18% Similarity=0.200 Sum_probs=132.8
Q ss_pred EEEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEE
Q 007234 11 TSFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (612)
Q Consensus 11 ~~fsp-dg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (612)
++|.+ +|.++++--..+.|..|+..++.... +.... ...+..... +..+
T Consensus 5 p~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--------------------~~G~~~~~~---------~g~l 54 (246)
T PF08450_consen 5 PVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--------------------PNGMAFDRP---------DGRL 54 (246)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--------------------EEEEEEECT---------TSEE
T ss_pred eEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--------------------CceEEEEcc---------CCEE
Confidence 48998 67777776678999999998876543 22110 112222211 3456
Q ss_pred EEEECCCcEEEEEcCCCeEEEEecc---C-CCCCeEEEEEecCCCEEEEEecC--------CcEEEEECCCCceeEEEec
Q 007234 90 VLGTGGGDVLALAVSAGQLKWRLSD---C-HPGGVSAISFATHGSCIYSAGAD--------GMVCEIDPLTGSLLGKFRA 157 (612)
Q Consensus 90 ~~gs~~g~I~vwd~~~~~~~~~~~~---~-h~~~V~~l~~sp~~~~l~s~s~d--------g~v~iwd~~~~~~~~~~~~ 157 (612)
+++...+ +.++|+.+++....... . .....+++++.|+|+..++.... |.|..++.. ++......
T Consensus 55 ~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~- 131 (246)
T PF08450_consen 55 YVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD- 131 (246)
T ss_dssp EEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-
T ss_pred EEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-
Confidence 6666544 45559999865432221 1 34568899999999976665533 568888876 55444433
Q ss_pred CCCCeeEEEECCCCCEEEEeC---CeEEEEEcCCC-e------eEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEE
Q 007234 158 STKGISCMAVSSDGKMLATAA---GQLKTFNCSDH-K------KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALW 227 (612)
Q Consensus 158 ~~~~v~~l~~spdg~~l~~~~---g~i~lwd~~~~-~------~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vw 227 (612)
.-...+.|+|+||++.|+++. +.|..|++... . .+..+....+....+++..+|+..++.. ..+.|.++
T Consensus 132 ~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~-~~~~I~~~ 210 (246)
T PF08450_consen 132 GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADW-GGGRIVVF 210 (246)
T ss_dssp EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEE-TTTEEEEE
T ss_pred CcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEc-CCCEEEEE
Confidence 345678999999999887654 78999998532 1 1222333333478899999998766654 68899999
Q ss_pred EcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEe
Q 007234 228 RTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS 271 (612)
Q Consensus 228 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s 271 (612)
+.+ ++.. ..+.-+....+.++|. .++.+.|+..+
T Consensus 211 ~p~-G~~~-----~~i~~p~~~~t~~~fg----g~~~~~L~vTt 244 (246)
T PF08450_consen 211 DPD-GKLL-----REIELPVPRPTNCAFG----GPDGKTLYVTT 244 (246)
T ss_dssp ETT-SCEE-----EEEE-SSSSEEEEEEE----STTSSEEEEEE
T ss_pred CCC-ccEE-----EEEcCCCCCEEEEEEE----CCCCCEEEEEe
Confidence 987 5533 2223332345666663 15656555543
No 282
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.82 E-value=4.3e-06 Score=82.84 Aligned_cols=143 Identities=18% Similarity=0.181 Sum_probs=114.5
Q ss_pred CcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCC-cEEEEECCCCceeEEEecCCCCeeE
Q 007234 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADG-MVCEIDPLTGSLLGKFRASTKGISC 164 (612)
Q Consensus 86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg-~v~iwd~~~~~~~~~~~~~~~~v~~ 164 (612)
++++++.+. |...|.+...+-.+ + -+|.+.|.-..+.-+++.++.|..|| .+-++|..+++.. .+...-+.|.+
T Consensus 332 Gd~ia~VSR-GkaFi~~~~~~~~i-q--v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k-r~e~~lg~I~a 406 (668)
T COG4946 332 GDYIALVSR-GKAFIMRPWDGYSI-Q--VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK-RIEKDLGNIEA 406 (668)
T ss_pred CcEEEEEec-CcEEEECCCCCeeE-E--cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEE-EeeCCccceEE
Confidence 677777765 56667666666554 2 36888898888888888899999999 8999998877654 44556678999
Q ss_pred EEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCC----eEEEEEcCCCcc
Q 007234 165 MAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER----YIALWRTDGVKK 234 (612)
Q Consensus 165 l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~----~i~vwd~~~~~~ 234 (612)
+..+|+|+.++++. ..|.+.|+.++.....=+...+-|+.+.|+|++++++.+- .+| .|+++|+.+++.
T Consensus 407 v~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYaf-P~gy~tq~Iklydm~~~Ki 481 (668)
T COG4946 407 VKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAF-PEGYYTQSIKLYDMDGGKI 481 (668)
T ss_pred EEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEec-CcceeeeeEEEEecCCCeE
Confidence 99999999999888 6888889999987555566778899999999999999864 555 689999998863
No 283
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.81 E-value=1.1e-08 Score=102.24 Aligned_cols=175 Identities=14% Similarity=0.139 Sum_probs=130.9
Q ss_pred cCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCC-------CceeEEEecCCCCeeEEEECCCCCEEEEeCCeEEEEEc
Q 007234 114 DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT-------GSLLGKFRASTKGISCMAVSSDGKMLATAAGQLKTFNC 186 (612)
Q Consensus 114 ~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~-------~~~~~~~~~~~~~v~~l~~spdg~~l~~~~g~i~lwd~ 186 (612)
.+|...|..++--.+.+.+++++.|++|++|.++. ..+..+++.|+.+|.++.|-.+-+++++++|-|.+||.
T Consensus 732 ~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~ScD~giHlWDP 811 (1034)
T KOG4190|consen 732 TGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASCDGGIHLWDP 811 (1034)
T ss_pred cCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeeccCcceeecc
Confidence 58999999888777778899999999999998863 24667788999999999999999999999999999998
Q ss_pred CCCeeEEEEe--cCCCCEEEEEEee--CCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCC
Q 007234 187 SDHKKMQKFS--GHPGAVRFMTFSD--NGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDD 262 (612)
Q Consensus 187 ~~~~~~~~~~--~h~~~v~~l~~sp--~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (612)
--++++..+. ...+.+..+..-+ +...++.+++...+|+++|.+..+-...-.+.....+.....++... +
T Consensus 812 Figr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa-----~ 886 (1034)
T KOG4190|consen 812 FIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVA-----D 886 (1034)
T ss_pred cccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEec-----c
Confidence 8777665432 1223333343333 34445555457889999999987644111222223455556777776 8
Q ss_pred CCcEEEEEecCCcEEEEECCCcceecccCCc
Q 007234 263 AGLYVLAISETGVCYIWYGQNIEELRNTKAT 293 (612)
Q Consensus 263 ~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~ 293 (612)
.|++++++-.+|.|.+.|.++|+.+..-.|-
T Consensus 887 ~GN~lAa~LSnGci~~LDaR~G~vINswrpm 917 (1034)
T KOG4190|consen 887 KGNKLAAALSNGCIAILDARNGKVINSWRPM 917 (1034)
T ss_pred CcchhhHHhcCCcEEEEecCCCceeccCCcc
Confidence 9999999999999999999999987654443
No 284
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.81 E-value=1e-06 Score=91.95 Aligned_cols=189 Identities=13% Similarity=0.124 Sum_probs=117.1
Q ss_pred eEEEEcCCCCE-EEEEeCC---CcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccccc
Q 007234 9 ILTSFSPALDY-FAICSGD---ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (612)
Q Consensus 9 l~~~fspdg~~-las~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (612)
+..+|||||+. ++..+.+ ..|.++|+.+|+...... ..+. .....|.+.
T Consensus 191 ~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~------------------~~~~~~SPD-------- 243 (419)
T PRK04043 191 IFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGM------------------LVVSDVSKD-------- 243 (419)
T ss_pred EeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCc------------------EEeeEECCC--------
Confidence 56799999985 6654443 468888999887655332 1111 122335433
Q ss_pred CCcEE-EEEECCC--cEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEec-CC--cEEEEECCCCceeEEEecC
Q 007234 85 GSSLL-VLGTGGG--DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA-DG--MVCEIDPLTGSLLGKFRAS 158 (612)
Q Consensus 85 ~~~~l-~~gs~~g--~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~-dg--~v~iwd~~~~~~~~~~~~~ 158 (612)
++.+ ++.+.+| .|.++|+.++... .+.. +........|+|||+.|+-.+. .+ .|+++|+.+++..+.....
T Consensus 244 -G~~la~~~~~~g~~~Iy~~dl~~g~~~-~LT~-~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g 320 (419)
T PRK04043 244 -GSKLLLTMAPKGQPDIYLYDTNTKTLT-QITN-YPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHG 320 (419)
T ss_pred -CCEEEEEEccCCCcEEEEEECCCCcEE-Eccc-CCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCC
Confidence 4434 4444444 4888898888754 3422 3333445689999988776653 23 6888899887764433221
Q ss_pred CCCeeEEEECCCCCEEEEeC--C---------eEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCC--eEE
Q 007234 159 TKGISCMAVSSDGKMLATAA--G---------QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER--YIA 225 (612)
Q Consensus 159 ~~~v~~l~~spdg~~l~~~~--g---------~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~--~i~ 225 (612)
. ....|+|||+.++... . .|++.|+.++.. +.+... .......|+|||+.++......+ .+.
T Consensus 321 ~---~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~ 395 (419)
T PRK04043 321 K---NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALG 395 (419)
T ss_pred C---cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEE
Confidence 1 1248999999988654 1 588889888764 444433 23335889999998877653333 355
Q ss_pred EEEcCCC
Q 007234 226 LWRTDGV 232 (612)
Q Consensus 226 vwd~~~~ 232 (612)
+.+++..
T Consensus 396 ~~~l~g~ 402 (419)
T PRK04043 396 IIRLNYN 402 (419)
T ss_pred EEecCCC
Confidence 5666554
No 285
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.81 E-value=1.2e-06 Score=80.70 Aligned_cols=197 Identities=11% Similarity=-0.007 Sum_probs=131.9
Q ss_pred CcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecC-CCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeE
Q 007234 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATH-GSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISC 164 (612)
Q Consensus 86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~-~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~ 164 (612)
-.+|+.|+..|...+|.+.+.+....+-..|...|+-+.=..+ .--+..++.|.++++.++.-+..........-.+.+
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns 163 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNS 163 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceee
Confidence 4578999999999999999887655544445554433221112 223777889999999988655433333222234789
Q ss_pred EEECCCCCEEEEeC--CeEEEEEcCCCe--eEE-EEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCcccccee
Q 007234 165 MAVSSDGKMLATAA--GQLKTFNCSDHK--KMQ-KFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC 239 (612)
Q Consensus 165 l~~spdg~~l~~~~--g~i~lwd~~~~~--~~~-~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~ 239 (612)
+.+++|++++++.+ ..|..|.+.... .++ .....+..--+..|+.....++++. .||++.|||++.........
T Consensus 164 ~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~-Qdg~~~I~DVR~~~tpm~~~ 242 (344)
T KOG4532|consen 164 LHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVF-QDGTCAIYDVRNMATPMAEI 242 (344)
T ss_pred eEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEe-cCCcEEEEEecccccchhhh
Confidence 99999999999877 788888876432 223 2222333345678888888888886 89999999998765443333
Q ss_pred eEeecCCceeEEeEEecCCccCCCCc--EEEEEecCCcEEEEECCCcceec
Q 007234 240 VLAMEHPAVFMDCRCIDNGGVDDAGL--YVLAISETGVCYIWYGQNIEELR 288 (612)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~t~s~dg~i~iwd~~~~~~~~ 288 (612)
..+.+++...+..+.|+ +.|. +|+..-.-+.+++.|++++...+
T Consensus 243 sstrp~hnGa~R~c~Fs-----l~g~lDLLf~sEhfs~~hv~D~R~~~~~q 288 (344)
T KOG4532|consen 243 SSTRPHHNGAFRVCRFS-----LYGLLDLLFISEHFSRVHVVDTRNYVNHQ 288 (344)
T ss_pred cccCCCCCCceEEEEec-----CCCcceEEEEecCcceEEEEEcccCceee
Confidence 34455777778888887 4332 33333335689999998887654
No 286
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.80 E-value=1.1e-07 Score=90.17 Aligned_cols=246 Identities=13% Similarity=0.076 Sum_probs=150.4
Q ss_pred CcEEEEEECCCcEEEEEcCCCeE----EEEeccCCC------------CCeEEEEEecCCC--EEEEEecCCcEEEEECC
Q 007234 86 SSLLVLGTGGGDVLALAVSAGQL----KWRLSDCHP------------GGVSAISFATHGS--CIYSAGADGMVCEIDPL 147 (612)
Q Consensus 86 ~~~l~~gs~~g~I~vwd~~~~~~----~~~~~~~h~------------~~V~~l~~sp~~~--~l~s~s~dg~v~iwd~~ 147 (612)
|.+|++|..+|.|.+|.-..... .....+.|. ..|..+.|.++++ .++....|.+|++|-+.
T Consensus 37 Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~ 116 (433)
T KOG1354|consen 37 GERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIR 116 (433)
T ss_pred cceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCcceeeeeee
Confidence 89999999999999996543221 222223343 4688899988665 46777799999999865
Q ss_pred CCc-----------------------------------eeEEE-ecCCCCeeEEEECCCCCEEEEeC-CeEEEEEcCCCe
Q 007234 148 TGS-----------------------------------LLGKF-RASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHK 190 (612)
Q Consensus 148 ~~~-----------------------------------~~~~~-~~~~~~v~~l~~spdg~~l~~~~-g~i~lwd~~~~~ 190 (612)
... +.+.+ .+|..-|.++.++.|+..+++++ =.|.+|+++-..
T Consensus 117 er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSADdLRINLWnlei~d 196 (433)
T KOG1354|consen 117 ERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSADDLRINLWNLEIID 196 (433)
T ss_pred ccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeeccceeeeeccccccC
Confidence 321 01111 13556789999999999999999 699999986432
Q ss_pred -e--EEEEecCC-----CCEEEEEEeeCC-cEEEEEEcCCCeEEEEEcCCCccccc-eeeEeecC----------CceeE
Q 007234 191 -K--MQKFSGHP-----GAVRFMTFSDNG-KYVLSSAVGERYIALWRTDGVKKQSA-SCVLAMEH----------PAVFM 250 (612)
Q Consensus 191 -~--~~~~~~h~-----~~v~~l~~sp~~-~~l~s~s~~d~~i~vwd~~~~~~~~~-~~~~~~~~----------~~~~~ 250 (612)
. +-.++.+. .-|++..|+|.. ..++.++ ..|+|++.|++....-.. ...+.... -...+
T Consensus 197 ~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSS-SKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSI 275 (433)
T KOG1354|consen 197 QSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSS-SKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSI 275 (433)
T ss_pred CceeEEEccccCHHHHHHHHhhhccCHhHccEEEEec-CCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhh
Confidence 2 22222232 347888999964 4555555 589999999984321100 01111110 11223
Q ss_pred EeEEecCCccCCCCcEEEEEecCCcEEEEECC-CcceecccCCceeEeecccccCCCCcccchhhhcccccceecCCCce
Q 007234 251 DCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ-NIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVH 329 (612)
Q Consensus 251 ~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~ 329 (612)
+-+.|+ ++|+++++-.. -+|++||+. ..+.+.+.+.+ +.. + +..+.++.
T Consensus 276 SDvKFs-----~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh-----~~l------r-----------~kLc~lYE-- 325 (433)
T KOG1354|consen 276 SDVKFS-----HSGRYILSRDY-LTVKLWDLNMEAKPVETYPVH-----EYL------R-----------SKLCSLYE-- 325 (433)
T ss_pred hceEEc-----cCCcEEEEecc-ceeEEEeccccCCcceEEeeh-----HhH------H-----------HHHHHHhh--
Confidence 445555 99999987655 489999974 23333222111 000 0 00000000
Q ss_pred EEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceee
Q 007234 330 TFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (612)
Q Consensus 330 ~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~ 379 (612)
....+ .-..++||.++..+ +|||..+..++.+.
T Consensus 326 -----nD~If-----------dKFec~~sg~~~~v-~TGsy~n~frvf~~ 358 (433)
T KOG1354|consen 326 -----NDAIF-----------DKFECSWSGNDSYV-MTGSYNNVFRVFNL 358 (433)
T ss_pred -----ccchh-----------heeEEEEcCCcceE-ecccccceEEEecC
Confidence 01111 34567899999999 99999999999984
No 287
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.79 E-value=1.9e-06 Score=99.71 Aligned_cols=212 Identities=11% Similarity=0.122 Sum_probs=130.2
Q ss_pred EEEEcCCCCEEEEEeC-CCcEEEEECCCCcEEEEeeccCCcccccccccc-ccccccccceeEEEeeecccccccccCCc
Q 007234 10 LTSFSPALDYFAICSG-DARIKIWDTLKGQVQTEFADIASTETTSLYGNR-LEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (612)
Q Consensus 10 ~~~fspdg~~las~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~-~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (612)
.++++++++.|..+.. .+.|+++|..++. +.++.+... ....+... ......-.....+++.+.+ +.
T Consensus 628 GIavd~~gn~LYVaDt~n~~Ir~id~~~~~-V~tlag~G~--~g~~~~gg~~~~~~~ln~P~gVa~dp~~--------g~ 696 (1057)
T PLN02919 628 GLAYNAKKNLLYVADTENHALREIDFVNET-VRTLAGNGT--KGSDYQGGKKGTSQVLNSPWDVCFEPVN--------EK 696 (1057)
T ss_pred EEEEeCCCCEEEEEeCCCceEEEEecCCCE-EEEEeccCc--ccCCCCCChhhhHhhcCCCeEEEEecCC--------Ce
Confidence 3489999887666554 5789999988765 334432110 00000000 0000001112345554433 55
Q ss_pred EEEEEECCCcEEEEEcCCCeEEEEec-------cCC------CCCeEEEEEecCCCEEEEE-ecCCcEEEEECCCCceeE
Q 007234 88 LLVLGTGGGDVLALAVSAGQLKWRLS-------DCH------PGGVSAISFATHGSCIYSA-GADGMVCEIDPLTGSLLG 153 (612)
Q Consensus 88 ~l~~gs~~g~I~vwd~~~~~~~~~~~-------~~h------~~~V~~l~~sp~~~~l~s~-s~dg~v~iwd~~~~~~~~ 153 (612)
++++.+.++.|++||..++....-.- .++ -...++++|+|+++.|+.+ +.++.|++||+.++....
T Consensus 697 LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~ 776 (1057)
T PLN02919 697 VYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRL 776 (1057)
T ss_pred EEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEE
Confidence 66777778889999998876531110 011 1245679999999865544 567899999998765321
Q ss_pred EEec-------------C--------CCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecC------------
Q 007234 154 KFRA-------------S--------TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGH------------ 198 (612)
Q Consensus 154 ~~~~-------------~--------~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h------------ 198 (612)
...+ . -.....++++++|.++++-. +.|++||..++.... +.+.
T Consensus 777 ~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~t-iaG~G~~G~~dG~~~~ 855 (1057)
T PLN02919 777 LAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTT-LAGTGKAGFKDGKALK 855 (1057)
T ss_pred EEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEE-EeccCCcCCCCCcccc
Confidence 1100 0 11346899999998777665 799999998876543 2221
Q ss_pred --CCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCcc
Q 007234 199 --PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK 234 (612)
Q Consensus 199 --~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~ 234 (612)
-.....++++++|+.+++-+ .++.|++||+.++..
T Consensus 856 a~l~~P~GIavd~dG~lyVaDt-~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 856 AQLSEPAGLALGENGRLFVADT-NNSLIRYLDLNKGEA 892 (1057)
T ss_pred cccCCceEEEEeCCCCEEEEEC-CCCEEEEEECCCCcc
Confidence 12467899999998766654 789999999988764
No 288
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.78 E-value=6.5e-08 Score=93.89 Aligned_cols=159 Identities=11% Similarity=0.172 Sum_probs=108.5
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEE
Q 007234 11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV 90 (612)
Q Consensus 11 ~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~ 90 (612)
+.++|+++++|.+..+....+++.........+- .........+.+.+... ...+.
T Consensus 68 ~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~---------------~~~~v~~~~~ai~~~~~---------~~sv~ 123 (390)
T KOG3914|consen 68 VLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLL---------------DVSCVPKRPTAISFIRE---------DTSVL 123 (390)
T ss_pred cccCCCceEEEEEeCCCceEEEEEecCCCcceee---------------eEeecccCcceeeeeec---------cceEE
Confidence 3789999999999888887777765443211110 00001112223333333 34566
Q ss_pred EEECCCcEE---EEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEE-ecCCCCeeEEE
Q 007234 91 LGTGGGDVL---ALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKF-RASTKGISCMA 166 (612)
Q Consensus 91 ~gs~~g~I~---vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~-~~~~~~v~~l~ 166 (612)
++...|+++ +|++..+.+. ..-||-+.+++++|+||+++++++..|..|++-....--.+..| -+|+..|..++
T Consensus 124 v~dkagD~~~~di~s~~~~~~~--~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~is 201 (390)
T KOG3914|consen 124 VADKAGDVYSFDILSADSGRCE--PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTIS 201 (390)
T ss_pred EEeecCCceeeeeecccccCcc--hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeee
Confidence 666666654 4554445543 33589999999999999999999999999999876654445543 46889999999
Q ss_pred ECCCCCEEEEeC--CeEEEEEcCCCeeEEEEe
Q 007234 167 VSSDGKMLATAA--GQLKTFNCSDHKKMQKFS 196 (612)
Q Consensus 167 ~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~ 196 (612)
+-++. .|++++ +++++||+.+|+.+.++.
T Consensus 202 l~~~~-~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 202 LTDNY-LLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred eccCc-eeeecCCCCcEEEEecccCCcccccc
Confidence 98654 466666 799999999999886654
No 289
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.78 E-value=9.2e-07 Score=91.49 Aligned_cols=243 Identities=11% Similarity=0.136 Sum_probs=157.8
Q ss_pred ccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccccc
Q 007234 5 NIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (612)
Q Consensus 5 ~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (612)
.|.--|++|+....|+|+||.||.++|..+.+...-...++ -..+..++.+.. ..||. ..+..+.|+...
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~g-laa~snLsmNQt-LeGH~-~sV~vvTWNe~~------- 83 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSG-LAAASNLSMNQT-LEGHN-ASVMVVTWNENN------- 83 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccc-cccccccchhhh-hccCc-ceEEEEEecccc-------
Confidence 34445779999999999999999999998876543333332 112233333333 34553 345567787664
Q ss_pred CCcEEEEEECCCcEEEEEcCCCeEEEEe-ccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeE-EEecCCCCe
Q 007234 85 GSSLLVLGTGGGDVLALAVSAGQLKWRL-SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLG-KFRASTKGI 162 (612)
Q Consensus 85 ~~~~l~~gs~~g~I~vwd~~~~~~~~~~-~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~v 162 (612)
+.+-+...+|-|.||-+-.|.-.... .....+.|.+++|+.||..+.....||.|.+=.+...+.-. .+++ ...
T Consensus 84 --QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg--~~l 159 (1189)
T KOG2041|consen 84 --QKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG--QLL 159 (1189)
T ss_pred --ccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch--hec
Confidence 44778888999999998777643222 23456789999999999999999999988776654333221 1222 234
Q ss_pred eEEEECCCCCEEEEeC--CeEEEEEcCCC-------eeEE----EEecCCCCEEEEEEe--------eCCcEEEEEEcCC
Q 007234 163 SCMAVSSDGKMLATAA--GQLKTFNCSDH-------KKMQ----KFSGHPGAVRFMTFS--------DNGKYVLSSAVGE 221 (612)
Q Consensus 163 ~~l~~spdg~~l~~~~--g~i~lwd~~~~-------~~~~----~~~~h~~~v~~l~~s--------p~~~~l~s~s~~d 221 (612)
..+.|++|.+.++.+- |.+.+||.+.. .+.- .+......|..+.|. |+...|+.+- ..
T Consensus 160 ~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy-~n 238 (1189)
T KOG2041|consen 160 AHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCY-AN 238 (1189)
T ss_pred cceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEE-cC
Confidence 5789999998887765 99999997643 1111 112222335566664 5777888775 78
Q ss_pred CeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecC
Q 007234 222 RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET 273 (612)
Q Consensus 222 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~d 273 (612)
|.+.+..-...... .+. .....+....|+ ++|..|++++.+
T Consensus 239 Gr~QiMR~eND~~P---vv~---dtgm~~vgakWn-----h~G~vLAvcG~~ 279 (1189)
T KOG2041|consen 239 GRMQIMRSENDPEP---VVV---DTGMKIVGAKWN-----HNGAVLAVCGND 279 (1189)
T ss_pred ceehhhhhcCCCCC---eEE---ecccEeecceec-----CCCcEEEEccCc
Confidence 88888654443322 122 222444556666 999999999875
No 290
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.74 E-value=1.2e-05 Score=83.92 Aligned_cols=181 Identities=12% Similarity=0.007 Sum_probs=113.2
Q ss_pred Cc-EEEEEECC---CcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEE-EecC--CcEEEEECCCCceeEEEecC
Q 007234 86 SS-LLVLGTGG---GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYS-AGAD--GMVCEIDPLTGSLLGKFRAS 158 (612)
Q Consensus 86 ~~-~l~~gs~~---g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s-~s~d--g~v~iwd~~~~~~~~~~~~~ 158 (612)
++ .++..+.. ..|+++|+.+++...-. . ..+......|+|||+.++. .+.+ ..|.++|+.+++.. .+..+
T Consensus 199 G~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~-~LT~~ 275 (419)
T PRK04043 199 EQTAFYYTSYGERKPTLYKYNLYTGKKEKIA-S-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLT-QITNY 275 (419)
T ss_pred CCcEEEEEEccCCCCEEEEEECCCCcEEEEe-c-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEE-EcccC
Confidence 44 35544443 34999999988765332 2 4456677889999987654 3333 46888898877643 34433
Q ss_pred CCCeeEEEECCCCCEEEEeC---C--eEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCC--------CeEE
Q 007234 159 TKGISCMAVSSDGKMLATAA---G--QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE--------RYIA 225 (612)
Q Consensus 159 ~~~v~~l~~spdg~~l~~~~---g--~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d--------~~i~ 225 (612)
........|+|||+.|+..+ | .|+++|+.+++..+.... ... ...|+|||++++..+... ..|.
T Consensus 276 ~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~ 352 (419)
T PRK04043 276 PGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLY 352 (419)
T ss_pred CCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CCc--CceECCCCCEEEEEEcCCCcccCCCCcEEE
Confidence 33344568999999887665 2 799999988876433321 111 248999999988876432 3677
Q ss_pred EEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCC---cEEEEECCCc
Q 007234 226 LWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG---VCYIWYGQNI 284 (612)
Q Consensus 226 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg---~i~iwd~~~~ 284 (612)
+.|+.++... .+.... ......|+ |||+.++..+.++ .+.+.++...
T Consensus 353 v~d~~~g~~~------~LT~~~-~~~~p~~S-----PDG~~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 353 LISTNSDYIR------RLTANG-VNQFPRFS-----SDGGSIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred EEECCCCCeE------ECCCCC-CcCCeEEC-----CCCCEEEEEEccCCcEEEEEEecCCC
Confidence 8888777533 111111 11224465 9999887776533 3556666443
No 291
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.74 E-value=2e-05 Score=76.26 Aligned_cols=198 Identities=15% Similarity=0.178 Sum_probs=136.6
Q ss_pred EEEEcC-CCCEEEEEeCCCc-EEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCc
Q 007234 10 LTSFSP-ALDYFAICSGDAR-IKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (612)
Q Consensus 10 ~~~fsp-dg~~las~s~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (612)
.++.+| ++..+|.+-.-|+ ..+||..+++..+.+....+... .|| -. ++.+ ++
T Consensus 9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHF---------yGH-------g~-fs~d--------G~ 63 (305)
T PF07433_consen 9 GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHF---------YGH-------GV-FSPD--------GR 63 (305)
T ss_pred ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEE---------ecC-------EE-EcCC--------CC
Confidence 458999 5667777877665 67899999999887753222110 111 11 2222 66
Q ss_pred EEEEEEC-----CCcEEEEEcC-CCeEEEEeccCCCCCeEEEEEecCCCEEEEEe------------------cCCcEEE
Q 007234 88 LLVLGTG-----GGDVLALAVS-AGQLKWRLSDCHPGGVSAISFATHGSCIYSAG------------------ADGMVCE 143 (612)
Q Consensus 88 ~l~~gs~-----~g~I~vwd~~-~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s------------------~dg~v~i 143 (612)
+|++.-+ .|.|-|||.. +-+.+.++ ..|.-.-..+.+.|||+.|+.+. .+.++..
T Consensus 64 ~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~-~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ 142 (305)
T PF07433_consen 64 LLYTTENDYETGRGVIGVYDAARGYRRIGEF-PSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVY 142 (305)
T ss_pred EEEEeccccCCCcEEEEEEECcCCcEEEeEe-cCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEE
Confidence 6666544 3569999999 44555555 45666778899999998888873 2345667
Q ss_pred EECCCCceeEEEec----CCCCeeEEEECCCCCEEEEeC--C-------eEEEEEcCCCeeEEEEe-------cCCCCEE
Q 007234 144 IDPLTGSLLGKFRA----STKGISCMAVSSDGKMLATAA--G-------QLKTFNCSDHKKMQKFS-------GHPGAVR 203 (612)
Q Consensus 144 wd~~~~~~~~~~~~----~~~~v~~l~~spdg~~l~~~~--g-------~i~lwd~~~~~~~~~~~-------~h~~~v~ 203 (612)
.|..+|+.+....- |...+..+++.++|..++..- | .+.+++... .+..+. .-.+.+-
T Consensus 143 ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~~~~~l~~Y~g 220 (305)
T PF07433_consen 143 LDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEEQWRRLNGYIG 220 (305)
T ss_pred EecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--cceeccCChHHHHhhCCceE
Confidence 78888988877443 666899999999998877664 2 355555433 222222 3347899
Q ss_pred EEEEeeCCcEEEEEEcCCCeEEEEEcCCCccc
Q 007234 204 FMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ 235 (612)
Q Consensus 204 ~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~ 235 (612)
+|++++++.++++++-..+.+.+||..++...
T Consensus 221 SIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~ 252 (305)
T PF07433_consen 221 SIAADRDGRLIAVTSPRGGRVAVWDAATGRLL 252 (305)
T ss_pred EEEEeCCCCEEEEECCCCCEEEEEECCCCCEe
Confidence 99999999988777767889999999998744
No 292
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.72 E-value=2e-06 Score=89.89 Aligned_cols=226 Identities=16% Similarity=0.119 Sum_probs=137.8
Q ss_pred CCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEECCC
Q 007234 17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGG 96 (612)
Q Consensus 17 g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g 96 (612)
+..+..++.+|.+..+|.++|+.+.+.+.... .++.+ +.. +..+++++.+|
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~-----~~ssP------------~v~------------~~~v~v~~~~g 170 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGE-----ALSRP------------VVS------------DGLVLVHTSNG 170 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCCc-----eecCC------------EEE------------CCEEEEECCCC
Confidence 45666777899999999999998877653211 01111 000 45678888999
Q ss_pred cEEEEEcCCCeEEEEeccCCCCC----eEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCC-------CeeEE
Q 007234 97 DVLALAVSAGQLKWRLSDCHPGG----VSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK-------GISCM 165 (612)
Q Consensus 97 ~I~vwd~~~~~~~~~~~~~h~~~----V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~-------~v~~l 165 (612)
.+..+|..+|+.+++........ ..+... .+..++.++.+|.+..+|..+|+.+-....... ....+
T Consensus 171 ~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~ 248 (394)
T PRK11138 171 MLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDV 248 (394)
T ss_pred EEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhccccc
Confidence 99999999999998875321100 011111 233577788899999999999987655432110 01111
Q ss_pred EECC---CCCEEEEeC-CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeE
Q 007234 166 AVSS---DGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVL 241 (612)
Q Consensus 166 ~~sp---dg~~l~~~~-g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~ 241 (612)
..+| ++..++++. |.++.+|..+|+.+.+..- .....+. ..+..++.++ .++.+..+|..+++.. .
T Consensus 249 ~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~--~~~~~~~--~~~~~vy~~~-~~g~l~ald~~tG~~~-----W 318 (394)
T PRK11138 249 DTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREY--GSVNDFA--VDGGRIYLVD-QNDRVYALDTRGGVEL-----W 318 (394)
T ss_pred CCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecC--CCccCcE--EECCEEEEEc-CCCeEEEEECCCCcEE-----E
Confidence 1222 444444444 8999999999987655431 1111222 2344566665 6899999999888643 1
Q ss_pred eecC-CceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceeccc
Q 007234 242 AMEH-PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT 290 (612)
Q Consensus 242 ~~~~-~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~ 290 (612)
.... .......... .+..|+.++.+|.|+..|..+|+.+...
T Consensus 319 ~~~~~~~~~~~sp~v-------~~g~l~v~~~~G~l~~ld~~tG~~~~~~ 361 (394)
T PRK11138 319 SQSDLLHRLLTAPVL-------YNGYLVVGDSEGYLHWINREDGRFVAQQ 361 (394)
T ss_pred cccccCCCcccCCEE-------ECCEEEEEeCCCEEEEEECCCCCEEEEE
Confidence 1111 0111111111 2356788899999999999999887544
No 293
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.70 E-value=1.3e-08 Score=106.97 Aligned_cols=192 Identities=16% Similarity=0.288 Sum_probs=136.0
Q ss_pred cceeEEEeeecccccccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCC--cEEE
Q 007234 66 VDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADG--MVCE 143 (612)
Q Consensus 66 ~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg--~v~i 143 (612)
..++|+++... .+.+++|+..|.|++|++.+|.....+ .+|.++|+-+.-+.+|..+++.+.-. -..+
T Consensus 1102 ~~fTc~afs~~---------~~hL~vG~~~Geik~~nv~sG~~e~s~-ncH~SavT~vePs~dgs~~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1102 ALFTCIAFSGG---------TNHLAVGSHAGEIKIFNVSSGSMEESV-NCHQSAVTLVEPSVDGSTQLTSSSSSSPLSAL 1171 (1516)
T ss_pred cceeeEEeecC---------CceEEeeeccceEEEEEccCccccccc-cccccccccccccCCcceeeeeccccCchHHH
Confidence 35666666544 678999999999999999999988666 68999999999999999877665332 5789
Q ss_pred EECCC-CceeEEEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEE-ec---CCCCEEEEEEeeCCcEEEE
Q 007234 144 IDPLT-GSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKF-SG---HPGAVRFMTFSDNGKYVLS 216 (612)
Q Consensus 144 wd~~~-~~~~~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~-~~---h~~~v~~l~~sp~~~~l~s 216 (612)
|++.+ +.+.++|. .-.++.|+.....-+.|. ....+||++|+.++.++ .+ ..-.-++..|+|+.++++
T Consensus 1172 W~~~s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl- 1246 (1516)
T KOG1832|consen 1172 WDASSTGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL- 1246 (1516)
T ss_pred hccccccCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe-
Confidence 99853 45555554 346788987655445555 68999999999877663 22 122236678999998765
Q ss_pred EEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCc
Q 007234 217 SAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKAT 293 (612)
Q Consensus 217 ~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~ 293 (612)
+|| .+||.+..+.+ ..+..-... -...| +|.|..++.-++ |||+++.+.+...+..
T Consensus 1247 ---ndG--vLWDvR~~~aI-----h~FD~ft~~-~~G~F-----HP~g~eVIINSE-----IwD~RTF~lLh~VP~L 1302 (1516)
T KOG1832|consen 1247 ---NDG--VLWDVRIPEAI-----HRFDQFTDY-GGGGF-----HPSGNEVIINSE-----IWDMRTFKLLHSVPSL 1302 (1516)
T ss_pred ---eCc--eeeeeccHHHH-----hhhhhheec-ccccc-----cCCCceEEeech-----hhhhHHHHHHhcCccc
Confidence 577 47999887543 222221111 12223 499999888775 8999999988765544
No 294
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.70 E-value=1e-05 Score=78.17 Aligned_cols=188 Identities=22% Similarity=0.281 Sum_probs=124.3
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEE
Q 007234 13 FSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLG 92 (612)
Q Consensus 13 fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~g 92 (612)
..+++.++.+++.++.|..||..+|+.+..+... ..+. ... ... +..++++
T Consensus 32 ~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~-~~~~--------------~~~------~~~--------~~~v~v~ 82 (238)
T PF13360_consen 32 AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLP-GPIS--------------GAP------VVD--------GGRVYVG 82 (238)
T ss_dssp EEEETTEEEEEETTSEEEEEETTTSEEEEEEECS-SCGG--------------SGE------EEE--------TTEEEEE
T ss_pred EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecc-cccc--------------cee------eec--------ccccccc
Confidence 3346667777789999999999999999887641 1111 000 000 6678888
Q ss_pred ECCCcEEEEEcCCCeEEEEeccCCC---CCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCC--------
Q 007234 93 TGGGDVLALAVSAGQLKWRLSDCHP---GGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG-------- 161 (612)
Q Consensus 93 s~~g~I~vwd~~~~~~~~~~~~~h~---~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~-------- 161 (612)
+.++.+..+|..+|+.+++...... ..........++..++.+..++.|..+|.++|+.+.........
T Consensus 83 ~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~ 162 (238)
T PF13360_consen 83 TSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSF 162 (238)
T ss_dssp ETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEE
T ss_pred cceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeee
Confidence 8889999999999999988422121 11223333334778888888999999999999998887764422
Q ss_pred --eeEEEECCCCCEEEEeC-Ce-EEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCcc
Q 007234 162 --ISCMAVSSDGKMLATAA-GQ-LKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK 234 (612)
Q Consensus 162 --v~~l~~spdg~~l~~~~-g~-i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~ 234 (612)
+.+-....++..+++.. +. +.+ |+.+++.+.+.. ...+.. ....++..++.++ .++.+..||+.+++.
T Consensus 163 ~~~~~~~~~~~~~v~~~~~~g~~~~~-d~~tg~~~w~~~--~~~~~~-~~~~~~~~l~~~~-~~~~l~~~d~~tG~~ 234 (238)
T PF13360_consen 163 SDINGSPVISDGRVYVSSGDGRVVAV-DLATGEKLWSKP--ISGIYS-LPSVDGGTLYVTS-SDGRLYALDLKTGKV 234 (238)
T ss_dssp TTEEEEEECCTTEEEEECCTSSEEEE-ETTTTEEEEEEC--SS-ECE-CEECCCTEEEEEE-TTTEEEEEETTTTEE
T ss_pred cccccceEEECCEEEEEcCCCeEEEE-ECCCCCEEEEec--CCCccC-CceeeCCEEEEEe-CCCEEEEEECCCCCE
Confidence 11222333554444444 64 555 999998664333 222222 1456677788877 799999999999874
No 295
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.69 E-value=7.5e-06 Score=85.54 Aligned_cols=237 Identities=13% Similarity=0.105 Sum_probs=140.0
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEECC
Q 007234 16 ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGG 95 (612)
Q Consensus 16 dg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~ 95 (612)
.+..+.+++.+|.|.-+|..+|+.+...+..... ..++.. ...... ..... .+..+++++.+
T Consensus 68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~---~~~~~~-~~~~~~--~~~~v------------~~~~v~v~~~~ 129 (394)
T PRK11138 68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKD---GWFSKN-KSALLS--GGVTV------------AGGKVYIGSEK 129 (394)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcc---cccccc-cccccc--cccEE------------ECCEEEEEcCC
Confidence 3557777788899999999999998876532210 000000 000000 00000 05678889999
Q ss_pred CcEEEEEcCCCeEEEEeccCCCCCeEE-EEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCe-----eEEEECC
Q 007234 96 GDVLALAVSAGQLKWRLSDCHPGGVSA-ISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI-----SCMAVSS 169 (612)
Q Consensus 96 g~I~vwd~~~~~~~~~~~~~h~~~V~~-l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v-----~~l~~sp 169 (612)
|.+..+|..+|+.+++.... ..+.+ ... .+..++.++.++.+..+|..+|+.+-.+......+ .+....
T Consensus 130 g~l~ald~~tG~~~W~~~~~--~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~- 204 (394)
T PRK11138 130 GQVYALNAEDGEVAWQTKVA--GEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA- 204 (394)
T ss_pred CEEEEEECCCCCCcccccCC--CceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE-
Confidence 99999999999998877432 22222 112 24467778889999999999999887765431111 111111
Q ss_pred CCCEEEEeC-CeEEEEEcCCCeeEEEEecCCC-------CEEEEEEee--CCcEEEEEEcCCCeEEEEEcCCCcccccee
Q 007234 170 DGKMLATAA-GQLKTFNCSDHKKMQKFSGHPG-------AVRFMTFSD--NGKYVLSSAVGERYIALWRTDGVKKQSASC 239 (612)
Q Consensus 170 dg~~l~~~~-g~i~lwd~~~~~~~~~~~~h~~-------~v~~l~~sp--~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~ 239 (612)
++..++... |.+..+|..+|+.+.+...... ....+.-+| .+..++.++ .++.+..+|..+++..
T Consensus 205 ~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~-~~g~l~ald~~tG~~~---- 279 (394)
T PRK11138 205 FGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALA-YNGNLVALDLRSGQIV---- 279 (394)
T ss_pred CCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEE-cCCeEEEEECCCCCEE----
Confidence 333444333 8999999999987655431110 001111122 234555555 6899999999988744
Q ss_pred eEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceeccc
Q 007234 240 VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT 290 (612)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~ 290 (612)
....... ... .. ..+..++.++.+|.+..+|..+|+.+...
T Consensus 280 -W~~~~~~-~~~-~~-------~~~~~vy~~~~~g~l~ald~~tG~~~W~~ 320 (394)
T PRK11138 280 -WKREYGS-VND-FA-------VDGGRIYLVDQNDRVYALDTRGGVELWSQ 320 (394)
T ss_pred -EeecCCC-ccC-cE-------EECCEEEEEcCCCeEEEEECCCCcEEEcc
Confidence 2211111 001 11 23567788889999999999999876543
No 296
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.67 E-value=5.6e-06 Score=76.37 Aligned_cols=188 Identities=13% Similarity=0.066 Sum_probs=127.9
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEEEe-eccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEECCC
Q 007234 18 DYFAICSGDARIKIWDTLKGQVQTEF-ADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGG 96 (612)
Q Consensus 18 ~~las~s~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g 96 (612)
.+||.||..|...+|...+.+..... ..+...+. .. ..-|.. ..-+..++.|.
T Consensus 85 ~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~---~~----------~r~cd~-------------~~~~~i~sndh 138 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVT---LV----------KRYCDL-------------KFPLNIASNDH 138 (344)
T ss_pred cEEEeccccceeeeecccCcccceeeecccccchh---hh----------hhhccc-------------ccceeeccCCc
Confidence 48999999999999999866543322 22211111 00 000000 23477889999
Q ss_pred cEEEEEcCCCeEEEEeccCCCC--CeEEEEEecCCCEEEEEecCCcEEEEECCCC--ceeEEE-ecCCCCeeEEEECCCC
Q 007234 97 DVLALAVSAGQLKWRLSDCHPG--GVSAISFATHGSCIYSAGADGMVCEIDPLTG--SLLGKF-RASTKGISCMAVSSDG 171 (612)
Q Consensus 97 ~I~vwd~~~~~~~~~~~~~h~~--~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~--~~~~~~-~~~~~~v~~l~~spdg 171 (612)
++++.++..+.....+ |.. .+.+++++++++++++.+....|..|.+... ..+.+. ......=.+..|+...
T Consensus 139 t~k~~~~~~~s~~~~~---h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~ 215 (344)
T KOG4532|consen 139 TGKTMVVSGDSNKFAV---HNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSEND 215 (344)
T ss_pred ceeEEEEecCccccee---eccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCc
Confidence 9999888766543332 333 3889999999999999999999999987643 233322 2233445688899988
Q ss_pred CEEEEeC--CeEEEEEcCCCeeE-----EEEecCCCCEEEEEEeeCCc--EEEEEEcCCCeEEEEEcCCCccc
Q 007234 172 KMLATAA--GQLKTFNCSDHKKM-----QKFSGHPGAVRFMTFSDNGK--YVLSSAVGERYIALWRTDGVKKQ 235 (612)
Q Consensus 172 ~~l~~~~--g~i~lwd~~~~~~~-----~~~~~h~~~v~~l~~sp~~~--~l~s~s~~d~~i~vwd~~~~~~~ 235 (612)
..+|++. |++.|||++..... .+-+.|.+.+..+.|++.|. +|+.+ ..-+.+.+.|+++....
T Consensus 216 ~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~s-Ehfs~~hv~D~R~~~~~ 287 (344)
T KOG4532|consen 216 LQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFIS-EHFSRVHVVDTRNYVNH 287 (344)
T ss_pred ceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEe-cCcceEEEEEcccCcee
Confidence 9999988 99999999875332 22356899999999998664 34443 35678999999987643
No 297
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.61 E-value=5.5e-07 Score=87.55 Aligned_cols=162 Identities=12% Similarity=0.146 Sum_probs=108.9
Q ss_pred CeEEEEEecCCCEEEEEecCCcEEEEECCCCc----eeEEEecCCCCeeEEEECCCCCEEEEeC--C---eEEEEEcCCC
Q 007234 119 GVSAISFATHGSCIYSAGADGMVCEIDPLTGS----LLGKFRASTKGISCMAVSSDGKMLATAA--G---QLKTFNCSDH 189 (612)
Q Consensus 119 ~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~----~~~~~~~~~~~v~~l~~spdg~~l~~~~--g---~i~lwd~~~~ 189 (612)
.+..+.+++++++++++..+....++++.... +...... ....+++.+..+......+. | .+.+|....+
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~ 142 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV-PKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG 142 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeec-ccCcceeeeeeccceEEEEeecCCceeeeeeccccc
Confidence 34556678888888888888877777765432 2333322 23345566655555555444 4 5555655554
Q ss_pred eeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEE
Q 007234 190 KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLA 269 (612)
Q Consensus 190 ~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 269 (612)
.+ ..+-||-+.++.++|+||+++++++. .|..|++-........ ..+-++|.. +++..+. -++..|++
T Consensus 143 ~~-~~~lGhvSml~dVavS~D~~~IitaD-RDEkIRvs~ypa~f~I---esfclGH~e-FVS~isl------~~~~~LlS 210 (390)
T KOG3914|consen 143 RC-EPILGHVSMLLDVAVSPDDQFIITAD-RDEKIRVSRYPATFVI---ESFCLGHKE-FVSTISL------TDNYLLLS 210 (390)
T ss_pred Cc-chhhhhhhhhheeeecCCCCEEEEec-CCceEEEEecCcccch---hhhccccHh-heeeeee------ccCceeee
Confidence 43 34458999999999999999999985 7999998776655433 223344444 4444555 34577999
Q ss_pred EecCCcEEEEECCCcceecccCCc
Q 007234 270 ISETGVCYIWYGQNIEELRNTKAT 293 (612)
Q Consensus 270 ~s~dg~i~iwd~~~~~~~~~~~~~ 293 (612)
++.|++|++||+.+|+.+.+..-.
T Consensus 211 ~sGD~tlr~Wd~~sgk~L~t~dl~ 234 (390)
T KOG3914|consen 211 GSGDKTLRLWDITSGKLLDTCDLS 234 (390)
T ss_pred cCCCCcEEEEecccCCcccccchh
Confidence 999999999999999998655443
No 298
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.61 E-value=3.5e-07 Score=83.77 Aligned_cols=144 Identities=13% Similarity=0.223 Sum_probs=91.0
Q ss_pred CcEEEEEECCCcEEEEEcCCCeEE-EEeccCCCCCeEEEEEecCCCEEEEEe-----cCCcEEEEECCCCceeEEEecCC
Q 007234 86 SSLLVLGTGGGDVLALAVSAGQLK-WRLSDCHPGGVSAISFATHGSCIYSAG-----ADGMVCEIDPLTGSLLGKFRAST 159 (612)
Q Consensus 86 ~~~l~~gs~~g~I~vwd~~~~~~~-~~~~~~h~~~V~~l~~sp~~~~l~s~s-----~dg~v~iwd~~~~~~~~~~~~~~ 159 (612)
++-++++..||.+.+++.+.-..+ .++...|.+ -.+.++...+..+.++. .-+..++|+++..+.+..-....
T Consensus 101 ~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~-~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~ 179 (319)
T KOG4714|consen 101 DNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSG-SASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKAL 179 (319)
T ss_pred CCceEecCCCceEEEEechHHHhhhhhccccccc-ccccceeecccEEecCCcceEeeccceeeeccccccccccccccc
Confidence 567999999999999987652111 111111221 12223333444444332 22345566654433222211122
Q ss_pred CCeeEEEECCCCCEEE-EeC--CeEEEEEcCCCee-EEEEecCCCCEEEEEEee-CCcEEEEEEcCCCeEEEEEcCC
Q 007234 160 KGISCMAVSSDGKMLA-TAA--GQLKTFNCSDHKK-MQKFSGHPGAVRFMTFSD-NGKYVLSSAVGERYIALWRTDG 231 (612)
Q Consensus 160 ~~v~~l~~spdg~~l~-~~~--g~i~lwd~~~~~~-~~~~~~h~~~v~~l~~sp-~~~~l~s~s~~d~~i~vwd~~~ 231 (612)
..|++++-+|..+.++ +|+ |.+-+||.++... ...+..|+.++..+-|+| ++..|++++ +||.+..||..+
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~s-edGslw~wdas~ 255 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCS-EDGSLWHWDAST 255 (319)
T ss_pred ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEec-CCCcEEEEcCCC
Confidence 3599999999766555 444 8999999988743 445678999999999998 456788887 899999999874
No 299
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.53 E-value=5.6e-05 Score=73.17 Aligned_cols=193 Identities=19% Similarity=0.301 Sum_probs=133.3
Q ss_pred CcEEEEEECCCc-EEEEEcCCCeEEEEeccCCCCCe--EEEEEecCCCEEEEEe-----cCCcEEEEECC-CCceeEEEe
Q 007234 86 SSLLVLGTGGGD-VLALAVSAGQLKWRLSDCHPGGV--SAISFATHGSCIYSAG-----ADGMVCEIDPL-TGSLLGKFR 156 (612)
Q Consensus 86 ~~~l~~gs~~g~-I~vwd~~~~~~~~~~~~~h~~~V--~~l~~sp~~~~l~s~s-----~dg~v~iwd~~-~~~~~~~~~ 156 (612)
...++.+-.-|+ ..+||..+++....+.. ..+.- ---.|++||++|++.- ..|.|-+||.. +.+.+.+|.
T Consensus 17 ~~avafaRRPG~~~~v~D~~~g~~~~~~~a-~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~ 95 (305)
T PF07433_consen 17 PEAVAFARRPGTFALVFDCRTGQLLQRLWA-PPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFP 95 (305)
T ss_pred CeEEEEEeCCCcEEEEEEcCCCceeeEEcC-CCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEec
Confidence 567888888888 78999999988765532 11111 1236999999999874 35789999998 678888898
Q ss_pred cCCCCeeEEEECCCCCEEEEeC-C-------------------eEEEEEcCCCeeEEE--E--ecCCCCEEEEEEeeCCc
Q 007234 157 ASTKGISCMAVSSDGKMLATAA-G-------------------QLKTFNCSDHKKMQK--F--SGHPGAVRFMTFSDNGK 212 (612)
Q Consensus 157 ~~~~~v~~l~~spdg~~l~~~~-g-------------------~i~lwd~~~~~~~~~--~--~~h~~~v~~l~~sp~~~ 212 (612)
.+.-....+.+.|||+.|+++. | ++...|..+|+.+.+ + .-|...|..+++.++|.
T Consensus 96 s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~ 175 (305)
T PF07433_consen 96 SHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGT 175 (305)
T ss_pred CCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCc
Confidence 8877888999999998888875 2 355567778887766 4 33778899999999997
Q ss_pred EEEEEEcCCC-------eEEEEEcCCCccccceeeEeec-----CCceeEEeEEecCCccCCCCcEEEEEec-CCcEEEE
Q 007234 213 YVLSSAVGER-------YIALWRTDGVKKQSASCVLAME-----HPAVFMDCRCIDNGGVDDAGLYVLAISE-TGVCYIW 279 (612)
Q Consensus 213 ~l~s~s~~d~-------~i~vwd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~t~s~-dg~i~iw 279 (612)
.++.. .+.+ -+-+++-... . ..+... .-...+.+++++ +++.++++.|- .|.+.+|
T Consensus 176 V~~a~-Q~qg~~~~~~PLva~~~~g~~--~---~~~~~p~~~~~~l~~Y~gSIa~~-----~~g~~ia~tsPrGg~~~~~ 244 (305)
T PF07433_consen 176 VAFAM-QYQGDPGDAPPLVALHRRGGA--L---RLLPAPEEQWRRLNGYIGSIAAD-----RDGRLIAVTSPRGGRVAVW 244 (305)
T ss_pred EEEEE-ecCCCCCccCCeEEEEcCCCc--c---eeccCChHHHHhhCCceEEEEEe-----CCCCEEEEECCCCCEEEEE
Confidence 55543 2333 2333332221 1 011111 112455667776 88887766664 6799999
Q ss_pred ECCCcceeccc
Q 007234 280 YGQNIEELRNT 290 (612)
Q Consensus 280 d~~~~~~~~~~ 290 (612)
|..+++.+...
T Consensus 245 d~~tg~~~~~~ 255 (305)
T PF07433_consen 245 DAATGRLLGSV 255 (305)
T ss_pred ECCCCCEeecc
Confidence 99999887643
No 300
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.51 E-value=1.6e-06 Score=79.53 Aligned_cols=189 Identities=11% Similarity=0.111 Sum_probs=111.0
Q ss_pred cEEEEEECCCcEEEEEcCCCeEEEEe-----------ccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCcee-EE
Q 007234 87 SLLVLGTGGGDVLALAVSAGQLKWRL-----------SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLL-GK 154 (612)
Q Consensus 87 ~~l~~gs~~g~I~vwd~~~~~~~~~~-----------~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~-~~ 154 (612)
..++++..++.+..+...++.+.... +..|+++-.+-+.+--+..+++++.||.+.+++.+.-..+ +.
T Consensus 48 ~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~ 127 (319)
T KOG4714|consen 48 YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSR 127 (319)
T ss_pred heeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhh
Confidence 34666666666666555444433111 1123322222222223456899999999999997652111 11
Q ss_pred EecCCCCeeEEEECCCCCEEEEeC-------CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEE
Q 007234 155 FRASTKGISCMAVSSDGKMLATAA-------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALW 227 (612)
Q Consensus 155 ~~~~~~~v~~l~~spdg~~l~~~~-------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vw 227 (612)
+......-.+.++...++.+.++. +..+.|+++..+.+..-...-..|.+++-+|..+.++.+|.+||.+-+|
T Consensus 128 i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~ 207 (319)
T KOG4714|consen 128 IPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLW 207 (319)
T ss_pred cccccccccccceeecccEEecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEE
Confidence 221112223344445677777665 3566777664433221111223488999999888888888899999999
Q ss_pred EcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCC
Q 007234 228 RTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN 283 (612)
Q Consensus 228 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~ 283 (612)
|.+..... +-.+..+...+.-+-|.+ .++..|+++++||.+.-||..+
T Consensus 208 d~rn~~~p----~S~l~ahk~~i~eV~FHp----k~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 208 DARNVAMP----VSLLKAHKAEIWEVHFHP----KNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred Ecccccch----HHHHHHhhhhhhheeccC----CCchheeEecCCCcEEEEcCCC
Confidence 99987433 112223333334444542 5778999999999999999765
No 301
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.48 E-value=1.9e-05 Score=82.99 Aligned_cols=203 Identities=13% Similarity=0.179 Sum_probs=136.9
Q ss_pred CCcccceeEEEEcCCC------------CEEEEEeCCCcEEEEECCCCcEEEEeeccCCcccccccccccccccccccee
Q 007234 2 GSSNIRDILTSFSPAL------------DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYT 69 (612)
Q Consensus 2 ~s~~V~~l~~~fspdg------------~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 69 (612)
+++.|..+ .|+|-. -+||++.-.|.|.+||...+..+..+..+..++ .
T Consensus 54 h~s~V~~V--rWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~------------------q 113 (1062)
T KOG1912|consen 54 HQSAVTSV--RWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSV------------------Q 113 (1062)
T ss_pred CccceeEE--EeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcch------------------h
Confidence 45667555 777631 256777778999999999998888886555443 3
Q ss_pred EEEeeecccccccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEec-CCCEEEEEecCCcEEEEECCC
Q 007234 70 CMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLT 148 (612)
Q Consensus 70 ~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp-~~~~l~s~s~dg~v~iwd~~~ 148 (612)
.++|.+..... ..++++-.....+.+||..+|+..++...+| ....|+.+.| |.+.+..-+..|.|.+-+.-.
T Consensus 114 dl~W~~~rd~S-----rd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~-~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~ 187 (1062)
T KOG1912|consen 114 DLCWVPARDDS-----RDVLLAIHGSSTLVLWNTDTGEKFWKYDYSH-EILSCFRVDPFDSRHFCVLGSKGFVLSCKDLG 187 (1062)
T ss_pred heeeeeccCcc-----hheeEEecCCcEEEEEEccCCceeeccccCC-cceeeeeeCCCCcceEEEEccCceEEEEeccC
Confidence 45565543320 3567777778889999999999999885544 5677899988 666677666777777665421
Q ss_pred -------CceeEEEecCCC------------C-------------eeEEEECCCCCEE-EEeC-CeEEEEEcCCCeeEEE
Q 007234 149 -------GSLLGKFRASTK------------G-------------ISCMAVSSDGKML-ATAA-GQLKTFNCSDHKKMQK 194 (612)
Q Consensus 149 -------~~~~~~~~~~~~------------~-------------v~~l~~spdg~~l-~~~~-g~i~lwd~~~~~~~~~ 194 (612)
|+..+.-..|.. . ....+|+|.-+.+ +..- ..+.++|++-..++..
T Consensus 188 ~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~v 267 (1062)
T KOG1912|consen 188 LSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAV 267 (1062)
T ss_pred CCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEE
Confidence 222222222111 0 1124667755433 3333 8999999999888888
Q ss_pred EecCCCCEEEEEEeeCCc--EEEEEEcCCCeEEEEEcCC
Q 007234 195 FSGHPGAVRFMTFSDNGK--YVLSSAVGERYIALWRTDG 231 (612)
Q Consensus 195 ~~~h~~~v~~l~~sp~~~--~l~s~s~~d~~i~vwd~~~ 231 (612)
..-..+.+.-+.+-|+++ .|++. ..||.+.+|--+.
T Consensus 268 vpier~~akfv~vlP~~~rd~Lfcl-H~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 268 VPIERGGAKFVDVLPDPRRDALFCL-HSNGRLTIRVRKE 305 (1062)
T ss_pred EEeccCCcceeEeccCCCcceEEEE-ecCCeEEEEEeec
Confidence 877777777788888765 45554 4799999997554
No 302
>PF04192 Utp21: Utp21 specific WD40 associated putative domain ; InterPro: IPR007319 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. Utp21 is a component of the SSU processome, which is required for pre-18S rRNA processing. It interacts with Utp18 [].; GO: 0006364 rRNA processing, 0032040 small-subunit processome
Probab=98.46 E-value=6.2e-07 Score=84.72 Aligned_cols=94 Identities=19% Similarity=0.194 Sum_probs=81.8
Q ss_pred CCchhhhhhhccc---------cccccCChhHHHHhhhccC------hhhHHHHHHHHHHHHhcCCCCccchHHHHHHHH
Q 007234 471 SNSALEATLFNGI---------DFETNIPVKKMRATILSLS------PTNACKLLEVLVDLWQSRSYKGKNILQWIYFIL 535 (612)
Q Consensus 471 ~~~~~~~~L~~~l---------~~~~~~~~~~I~~ti~~Lp------~~~~~~lL~~l~~~l~~~~~~~~~~~~W~~~ll 535 (612)
..+.++..|..+- +.++.++|+.|+..||+|. ...+..||++|..+|.++.+ +|+++.|+..+|
T Consensus 109 ~~s~f~~lL~~~~~~~dy~~~~~~LkslsPS~iDlEIRsL~~~~~~~~~~l~~Fl~~l~~~L~~~~d-fElvQa~l~vFL 187 (237)
T PF04192_consen 109 FESEFTRLLRSASESEDYSEFLEYLKSLSPSAIDLEIRSLSPESGGSYEELVSFLRFLTYRLKSRRD-FELVQAYLSVFL 187 (237)
T ss_pred ccCHHHHHHHhhcccccHHHHHHHHHhCChhHHHHHHHhccCccCCcHHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHH
Confidence 3456777776644 7888899999999999999 67888999999999988775 999999999999
Q ss_pred HHhcccccCCcC---hHHHHHHHHHHHHhhccc
Q 007234 536 VNHGHHLLSQES---LTPMLSSLYKVFRSASCK 565 (612)
Q Consensus 536 ~~H~~~l~s~~~---l~~~L~~l~~~l~~r~~~ 565 (612)
++||..|+..++ |+..|..|.+..++...+
T Consensus 188 k~Hgd~i~~~~~~~~L~~~l~~l~~~q~~~w~~ 220 (237)
T PF04192_consen 188 KVHGDVIMESEEEEELREALEELREAQESEWKR 220 (237)
T ss_pred HHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999 999999999988776444
No 303
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.45 E-value=6.8e-05 Score=80.00 Aligned_cols=194 Identities=18% Similarity=0.217 Sum_probs=129.3
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEE
Q 007234 11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV 90 (612)
Q Consensus 11 ~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~ 90 (612)
-+|++.+..+|.|+.+|.|.+.+- +-+.++.|+.+...+....+..+ . ..+++
T Consensus 29 sc~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~------------------~--------~~~L~ 81 (933)
T KOG2114|consen 29 SCCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILN------------------K--------QNFLF 81 (933)
T ss_pred eEEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhccc------------------C--------ceEEE
Confidence 478999999999999999888774 34444666654443211111111 0 34566
Q ss_pred EEECCCc-----EEEEEcCCC------eEE--EEec----cCCCCCeEEEEEecCCCEEEEEecCCcEEEEE--CCC--C
Q 007234 91 LGTGGGD-----VLALAVSAG------QLK--WRLS----DCHPGGVSAISFATHGSCIYSAGADGMVCEID--PLT--G 149 (612)
Q Consensus 91 ~gs~~g~-----I~vwd~~~~------~~~--~~~~----~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd--~~~--~ 149 (612)
+...|+. ++||+++.- +++ .++. .....++.+++.+.+-+.+++|-.||.|.++. +.. |
T Consensus 82 sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrg 161 (933)
T KOG2114|consen 82 SVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRG 161 (933)
T ss_pred EEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccc
Confidence 5555443 899998643 222 1111 12356789999999988899999999999884 222 2
Q ss_pred ceeEEEecCCCCeeEEEECCCCCE-EEEeC-CeEEEEEcCCCee-EEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEE
Q 007234 150 SLLGKFRASTKGISCMAVSSDGKM-LATAA-GQLKTFNCSDHKK-MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIAL 226 (612)
Q Consensus 150 ~~~~~~~~~~~~v~~l~~spdg~~-l~~~~-g~i~lwd~~~~~~-~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~v 226 (612)
...........+|+.+.+..+++. ++++. ..|.+|.+....+ ...+..|...+.|-.|++....+++++ +..+.+
T Consensus 162 sr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~--~e~l~f 239 (933)
T KOG2114|consen 162 SRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG--SEFLYF 239 (933)
T ss_pred cceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec--CceEEE
Confidence 222222334569999999998887 34444 8999999984442 455778888899999987666566654 567999
Q ss_pred EEcCCCc
Q 007234 227 WRTDGVK 233 (612)
Q Consensus 227 wd~~~~~ 233 (612)
|+....+
T Consensus 240 Y~sd~~~ 246 (933)
T KOG2114|consen 240 YDSDGRG 246 (933)
T ss_pred EcCCCcc
Confidence 9987544
No 304
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.44 E-value=6.4e-05 Score=85.67 Aligned_cols=187 Identities=12% Similarity=0.209 Sum_probs=121.8
Q ss_pred CcEEEEEECCCcEEEE----EcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeE--------
Q 007234 86 SSLLVLGTGGGDVLAL----AVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLG-------- 153 (612)
Q Consensus 86 ~~~l~~gs~~g~I~vw----d~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~-------- 153 (612)
...++++..+|.|.++ +...... .....-...|.+++||||+..|+.+..++++.+.+- +.+++.
T Consensus 87 ~~~l~~~~~~Gdi~~~~~~~~~~~~~~--E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~-~fd~i~E~~l~~~~ 163 (928)
T PF04762_consen 87 SESLCIALASGDIILVREDPDPDEDEI--EIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTR-DFDPISEVPLDSDD 163 (928)
T ss_pred CCcEEEEECCceEEEEEccCCCCCcee--EEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEec-cceEEEEeecCccc
Confidence 5679999999999988 5554443 222234578999999999999999988888877642 111111
Q ss_pred ----------------EEec------------------------CCCCeeEEEECCCCCEEEEeC-----C---eEEEEE
Q 007234 154 ----------------KFRA------------------------STKGISCMAVSSDGKMLATAA-----G---QLKTFN 185 (612)
Q Consensus 154 ----------------~~~~------------------------~~~~v~~l~~spdg~~l~~~~-----g---~i~lwd 185 (612)
.|++ ....-..|+|..||.++|+.+ | .++||+
T Consensus 164 ~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ 243 (928)
T PF04762_consen 164 FGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYS 243 (928)
T ss_pred cCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEEC
Confidence 1111 112345788999999999875 3 789998
Q ss_pred cCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCC--CeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCC
Q 007234 186 CSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE--RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDA 263 (612)
Q Consensus 186 ~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d--~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (612)
-+ |.....-..-.+--.+++|.|.|++++++-... ..|.+|.-+.-+.. ............+..+.|+ .|
T Consensus 244 Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhg--eF~l~~~~~~~~v~~l~Wn-----~d 315 (928)
T PF04762_consen 244 RE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHG--EFTLRFDPEEEKVIELAWN-----SD 315 (928)
T ss_pred CC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEee--eEecCCCCCCceeeEEEEC-----CC
Confidence 54 665444333334445689999999988875322 34556654443322 1222222344555667787 99
Q ss_pred CcEEEEEecCCcEEEEECCCc
Q 007234 264 GLYVLAISETGVCYIWYGQNI 284 (612)
Q Consensus 264 ~~~l~t~s~dg~i~iwd~~~~ 284 (612)
+..|+....|. |.+|-..+.
T Consensus 316 s~iLAv~~~~~-vqLWt~~NY 335 (928)
T PF04762_consen 316 SEILAVWLEDR-VQLWTRSNY 335 (928)
T ss_pred CCEEEEEecCC-ceEEEeeCC
Confidence 99999987665 999976554
No 305
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.43 E-value=0.00043 Score=64.01 Aligned_cols=142 Identities=22% Similarity=0.285 Sum_probs=99.9
Q ss_pred CCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEECCC
Q 007234 17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGG 96 (612)
Q Consensus 17 g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g 96 (612)
..+++.|+..+.+.--|..+|..+.+-- +.....+-+..- ++++++|+.+|
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~i-------------------lg~RiE~sa~vv----------gdfVV~GCy~g 73 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI-------------------LGVRIECSAIVV----------GDFVVLGCYSG 73 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehh-------------------hCceeeeeeEEE----------CCEEEEEEccC
Confidence 4577788889999999999999876531 011111111111 78899999999
Q ss_pred cEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEEEECC-CCCEEE
Q 007234 97 DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSS-DGKMLA 175 (612)
Q Consensus 97 ~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~sp-dg~~l~ 175 (612)
.+++.+.++|...+.+.....-.+.. ...+++..++.++.|++.+..|.++..++.+.+....-..+-+..| ++.+.+
T Consensus 74 ~lYfl~~~tGs~~w~f~~~~~vk~~a-~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~ 152 (354)
T KOG4649|consen 74 GLYFLCVKTGSQIWNFVILETVKVRA-QCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYA 152 (354)
T ss_pred cEEEEEecchhheeeeeehhhhccce-EEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEE
Confidence 99999999998887775333333333 3466899999999999999999999999998877666556666677 555555
Q ss_pred EeC-CeEEEEEcCC
Q 007234 176 TAA-GQLKTFNCSD 188 (612)
Q Consensus 176 ~~~-g~i~lwd~~~ 188 (612)
+.. |.+.--..++
T Consensus 153 a~t~G~vlavt~~~ 166 (354)
T KOG4649|consen 153 AITAGAVLAVTKNP 166 (354)
T ss_pred EeccceEEEEccCC
Confidence 444 6554444443
No 306
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.42 E-value=1.8e-06 Score=82.28 Aligned_cols=156 Identities=10% Similarity=0.100 Sum_probs=110.9
Q ss_pred EEEcCC--CCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcE
Q 007234 11 TSFSPA--LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (612)
Q Consensus 11 ~~fspd--g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (612)
|+||=+ |-. ++.+.+-.|-+-|+++|... .|. ..+.|....|... +.+
T Consensus 217 CawSlni~gyh-fs~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~s---------------------------~nL 266 (425)
T KOG2695|consen 217 CAWSLNIMGYH-FSVGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAGS---------------------------DNL 266 (425)
T ss_pred hhhhhccceee-ecccccceeEEEEeeccccc-ccc-cchhHHHHHhccc---------------------------CCe
Confidence 356543 334 34445566778888877543 333 3444444444443 788
Q ss_pred EEEEECCCcEEEEEcCCC-----eEEEEeccCCCCCeEEEEEec-CCCEEEEEecCCcEEEEECCCCce---eEEEecCC
Q 007234 89 LVLGTGGGDVLALAVSAG-----QLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSL---LGKFRAST 159 (612)
Q Consensus 89 l~~gs~~g~I~vwd~~~~-----~~~~~~~~~h~~~V~~l~~sp-~~~~l~s~s~dg~v~iwd~~~~~~---~~~~~~~~ 159 (612)
+..|+.+|.|.++|++.+ .+...+ -|.+.|+++..-. ++++|++.+.+|+|++||++--++ +..+.+|.
T Consensus 267 v~~GcRngeI~~iDLR~rnqG~~~~a~rl--yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHv 344 (425)
T KOG2695|consen 267 VFNGCRNGEIFVIDLRCRNQGNGWCAQRL--YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHV 344 (425)
T ss_pred eEecccCCcEEEEEeeecccCCCcceEEE--EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeeccc
Confidence 999999999999999865 344444 3899999998776 788999999999999999987666 88888887
Q ss_pred CCeeE--EEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecC
Q 007234 160 KGISC--MAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGH 198 (612)
Q Consensus 160 ~~v~~--l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h 198 (612)
..-.- +-+.+....+++++ .-.++|.++.+..+.+++-.
T Consensus 345 N~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 345 NLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred ccccccccccccccceEEEccCeeEEEEEecccCceeeccCCC
Confidence 63333 33456666666665 68899999999998887643
No 307
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.42 E-value=8.4e-07 Score=84.45 Aligned_cols=141 Identities=15% Similarity=0.280 Sum_probs=107.6
Q ss_pred EEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCC-----ceeEEEecCCCCeeE
Q 007234 90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG-----SLLGKFRASTKGISC 164 (612)
Q Consensus 90 ~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~-----~~~~~~~~~~~~v~~ 164 (612)
++.+.+-.|.+-|+++|-.. .+ . ..+.|.++.|...++.++.|..+|.|...|++.+ .+...+. |...|++
T Consensus 228 fs~G~sqqv~L~nvetg~~q-sf-~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvts 303 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQ-SF-Q-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTS 303 (425)
T ss_pred ecccccceeEEEEeeccccc-cc-c-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhh
Confidence 44555666888888877653 22 2 5678999999998999999999999999999864 3444444 7788888
Q ss_pred EEECC-CCCEEEEeC--CeEEEEEcCCCee---EEEEecCCCCEEEE--EEeeCCcEEEEEEcCCCeEEEEEcCCCccc
Q 007234 165 MAVSS-DGKMLATAA--GQLKTFNCSDHKK---MQKFSGHPGAVRFM--TFSDNGKYVLSSAVGERYIALWRTDGVKKQ 235 (612)
Q Consensus 165 l~~sp-dg~~l~~~~--g~i~lwd~~~~~~---~~~~~~h~~~v~~l--~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~ 235 (612)
+..-. ++.+|.+.+ |+|++||.+--++ +.++.||...-.-+ ...+....++++| +|...++|.++.+...
T Consensus 304 lq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~G-dDcytRiWsl~~ghLl 381 (425)
T KOG2695|consen 304 LQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVG-DDCYTRIWSLDSGHLL 381 (425)
T ss_pred hhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEcc-CeeEEEEEecccCcee
Confidence 88765 666666666 9999999987776 89999997654433 3346666788887 7999999999998755
No 308
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.41 E-value=4.4e-06 Score=89.12 Aligned_cols=179 Identities=16% Similarity=0.198 Sum_probs=128.9
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEECC
Q 007234 16 ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGG 95 (612)
Q Consensus 16 dg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~ 95 (612)
++..+.-|+-...+..+|..+++..+......+ .++.+.- +++++.+|...
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~------------------~v~imR~-----------Nnr~lf~G~t~ 196 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSAS------------------GVTIMRY-----------NNRNLFCGDTR 196 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCC------------------ceEEEEe-----------cCcEEEeeccc
Confidence 345566777777788889988877765532211 1222221 17889999999
Q ss_pred CcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEec---------CCcEEEEECCCCceeEEEecCCCCeeEEE
Q 007234 96 GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA---------DGMVCEIDPLTGSLLGKFRASTKGISCMA 166 (612)
Q Consensus 96 g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~---------dg~v~iwd~~~~~~~~~~~~~~~~v~~l~ 166 (612)
|+|.+-|+.+.+.++++ .+|++.|.++.. .|+.|++||. |.-|++||++..+.+.-+..+.++ .-+.
T Consensus 197 G~V~LrD~~s~~~iht~-~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flr 272 (1118)
T KOG1275|consen 197 GTVFLRDPNSFETIHTF-DAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLR 272 (1118)
T ss_pred ceEEeecCCcCceeeee-eccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhh
Confidence 99999999999999888 689999998877 5889999974 556899999988777666655443 5677
Q ss_pred ECCC--CCEEEEeC-CeEEEEEc---CCC-eeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEE
Q 007234 167 VSSD--GKMLATAA-GQLKTFNC---SDH-KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWR 228 (612)
Q Consensus 167 ~spd--g~~l~~~~-g~i~lwd~---~~~-~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd 228 (612)
|+|. .+.+++.+ |...+.|. .+. ..+..+....+.+..++++++|..++.+- .+|.|.+|.
T Consensus 273 f~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd-~~g~v~~wa 340 (1118)
T KOG1275|consen 273 FHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGD-HEGHVNLWA 340 (1118)
T ss_pred hcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEec-ccCcEeeec
Confidence 8874 33333333 99999883 332 12333333445589999999999999886 799999997
No 309
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.40 E-value=1.3e-06 Score=57.65 Aligned_cols=39 Identities=23% Similarity=0.604 Sum_probs=36.2
Q ss_pred CeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEE
Q 007234 189 HKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWR 228 (612)
Q Consensus 189 ~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd 228 (612)
++++.++.+|.++|.+++|+|++.+|++++ .|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~-~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGS-SDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEE-TTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeC-CCCEEEEEC
Confidence 367889999999999999999999999998 799999997
No 310
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=1.9e-05 Score=76.96 Aligned_cols=239 Identities=14% Similarity=0.088 Sum_probs=136.8
Q ss_pred CcccceeEEEEcCCCC-EEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234 3 SSNIRDILTSFSPALD-YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (612)
Q Consensus 3 s~~V~~l~~~fspdg~-~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (612)
...||++ +|||..+ ++..++.+..|+|.|+++..++..+..+ ..+. +++|.-.+
T Consensus 193 g~~Irdl--afSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~w------------------SC~wDlde---- 247 (463)
T KOG1645|consen 193 GSFIRDL--AFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIW------------------SCCWDLDE---- 247 (463)
T ss_pred chhhhhh--ccCccccceeeeeccCceEEEEecccceeeeheecc-CCce------------------eeeeccCC----
Confidence 4578888 9999888 7788899999999999999988877644 3333 34454443
Q ss_pred cccCCcEEEEEECCCcEEEEEcCCCeEEEEecc--CCCCCeEEEEEec------CCCEEEEEecCCcEEEEECCC--Cce
Q 007234 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSD--CHPGGVSAISFAT------HGSCIYSAGADGMVCEIDPLT--GSL 151 (612)
Q Consensus 82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~--~h~~~V~~l~~sp------~~~~l~s~s~dg~v~iwd~~~--~~~ 151 (612)
.++|..|..+|.|.|||++..+-....+. -...+|..++.-+ .|..++.++.+ ...|++.- +..
T Consensus 248 ----~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~ 321 (463)
T KOG1645|consen 248 ----RHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECL 321 (463)
T ss_pred ----cceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCC
Confidence 67899999999999999987654322111 1234455544332 23333333332 45565432 222
Q ss_pred eEEEec-CCCCeeEEEECCCCCEEEEeC--C----eEE---E-EEcCCCeeEEEE-ecCC-CCE------EEEEEeeCCc
Q 007234 152 LGKFRA-STKGISCMAVSSDGKMLATAA--G----QLK---T-FNCSDHKKMQKF-SGHP-GAV------RFMTFSDNGK 212 (612)
Q Consensus 152 ~~~~~~-~~~~v~~l~~spdg~~l~~~~--g----~i~---l-wd~~~~~~~~~~-~~h~-~~v------~~l~~sp~~~ 212 (612)
...++. ..+.+.++++++..++++... + +++ . -|-.+|.++..- .+|. ++- ..+.-.++.+
T Consensus 322 p~vlele~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn 401 (463)
T KOG1645|consen 322 PCVLELEPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNN 401 (463)
T ss_pred CcccccCCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceecccccc
Confidence 222221 345677777777666665543 1 111 1 123344333222 2221 111 1122245667
Q ss_pred EEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECC
Q 007234 213 YVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (612)
Q Consensus 213 ~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~ 282 (612)
+++..+...+.+.+||..+.+.. ..+.-...+.+...+. ...+.+|++-+ |..++||..+
T Consensus 402 ~iv~~gd~tn~lil~D~~s~evv-----Q~l~~~epv~Dicp~~----~n~~syLa~LT-d~~v~Iyk~e 461 (463)
T KOG1645|consen 402 YIVVVGDSTNELILQDPHSFEVV-----QTLALSEPVLDICPND----TNGSSYLALLT-DDRVHIYKNE 461 (463)
T ss_pred EEEEecCCcceeEEeccchhhee-----eecccCcceeecceee----cCCcchhhhee-cceEEEEecC
Confidence 77776656678999999988643 4444444444444443 13345555555 4578887643
No 311
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.35 E-value=1.4e-06 Score=57.44 Aligned_cols=38 Identities=18% Similarity=0.378 Sum_probs=33.8
Q ss_pred eEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEE
Q 007234 107 QLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEID 145 (612)
Q Consensus 107 ~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd 145 (612)
+++..+ .+|.+.|++++|+|++.+|++|+.|++|++||
T Consensus 2 ~~~~~~-~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTF-RGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEE-ESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEE-cCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 344444 68999999999999999999999999999997
No 312
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.30 E-value=0.00063 Score=69.85 Aligned_cols=304 Identities=12% Similarity=0.091 Sum_probs=146.7
Q ss_pred cCCCCEEEEEe---------CCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccccc
Q 007234 14 SPALDYFAICS---------GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (612)
Q Consensus 14 spdg~~las~s---------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (612)
|||+++++... ..+.+.|||+.+++....... . .......|.|.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~------------------~~~~~~~~sP~-------- 53 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-P------------------PKLQDAKWSPD-------- 53 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-E------------------TTBSEEEE-SS--------
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-c------------------cccccceeecC--------
Confidence 78999887632 246789999999876653321 1 22334445544
Q ss_pred CCcEEEEEECCCcEEEEEcCCCeEEEEeccCC----------------CCCeEEEEEecCCCEEEEEecC-CcEEEEECC
Q 007234 85 GSSLLVLGTGGGDVLALAVSAGQLKWRLSDCH----------------PGGVSAISFATHGSCIYSAGAD-GMVCEIDPL 147 (612)
Q Consensus 85 ~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h----------------~~~V~~l~~sp~~~~l~s~s~d-g~v~iwd~~ 147 (612)
++.++... +++|.+++..++...+-...+- -+.-.++.|||||++|+....| ..|+.+.+.
T Consensus 54 -g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~ 131 (353)
T PF00930_consen 54 -GKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLP 131 (353)
T ss_dssp -STEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEE
T ss_pred -CCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEee
Confidence 55566554 5789999988886553332330 1123568899999998877543 334443321
Q ss_pred CCceeEEEecCC---CCeeEEEECCCCCEEEEeCCeEEEEEcCCCeeEE-EE----ecCCCCEEEEEEeeCCcEE-EEEE
Q 007234 148 TGSLLGKFRAST---KGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQ-KF----SGHPGAVRFMTFSDNGKYV-LSSA 218 (612)
Q Consensus 148 ~~~~~~~~~~~~---~~v~~l~~spdg~~l~~~~g~i~lwd~~~~~~~~-~~----~~h~~~v~~l~~sp~~~~l-~s~s 218 (612)
. +.... ..+..+.+-.-|.-- ..-.+.++|+.+++... .. ..-...+..+.|.+++..+ +.-.
T Consensus 132 ~------~~~~~~~yp~~~~~~YPk~G~~n--p~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~ 203 (353)
T PF00930_consen 132 D------YSPPDSQYPEVESIRYPKAGDPN--PRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWL 203 (353)
T ss_dssp E------ESSSTESS-EEEEEE--BTTS-----EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEE
T ss_pred c------cCCccccCCcccccccCCCCCcC--CceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEc
Confidence 0 11111 123333332112111 00267888998886532 11 1334568899999999833 3332
Q ss_pred cCCC---eEEEEEcCCCccccceeeEeecCCcee--E-EeEEecCCccCCCCcEEEEEecCCc--EEEEECCCcceeccc
Q 007234 219 VGER---YIALWRTDGVKKQSASCVLAMEHPAVF--M-DCRCIDNGGVDDAGLYVLAISETGV--CYIWYGQNIEELRNT 290 (612)
Q Consensus 219 ~~d~---~i~vwd~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~l~t~s~dg~--i~iwd~~~~~~~~~~ 290 (612)
..+. .+.++|..++... .+........+ . ....+. ..++.++.....||. |.+++...+... .+
T Consensus 204 nR~q~~~~l~~~d~~tg~~~---~~~~e~~~~Wv~~~~~~~~~~----~~~~~~l~~s~~~G~~hly~~~~~~~~~~-~l 275 (353)
T PF00930_consen 204 NRDQNRLDLVLCDASTGETR---VVLEETSDGWVDVYDPPHFLG----PDGNEFLWISERDGYRHLYLYDLDGGKPR-QL 275 (353)
T ss_dssp ETTSTEEEEEEEEECTTTCE---EEEEEESSSSSSSSSEEEE-T----TTSSEEEEEEETTSSEEEEEEETTSSEEE-ES
T ss_pred ccCCCEEEEEEEECCCCcee---EEEEecCCcceeeeccccccc----CCCCEEEEEEEcCCCcEEEEEccccccee-cc
Confidence 2222 4667777776543 22222222111 1 112221 144455666667884 555566655422 22
Q ss_pred CCceeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEecccc
Q 007234 291 KATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQS 369 (612)
Q Consensus 291 ~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s 369 (612)
......+.....+.++++. ..++|..++ ....++...... .....+.++..........|||||++++.+.|
T Consensus 276 T~G~~~V~~i~~~d~~~~~---iyf~a~~~~---p~~r~lY~v~~~-~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 276 TSGDWEVTSILGWDEDNNR---IYFTANGDN---PGERHLYRVSLD-SGGEPKCLTCEDGDHYSASFSPDGKYYVDTYS 347 (353)
T ss_dssp S-SSS-EEEEEEEECTSSE---EEEEESSGG---TTSBEEEEEETT-ETTEEEESSTTSSTTEEEEE-TTSSEEEEEEE
T ss_pred ccCceeecccceEcCCCCE---EEEEecCCC---CCceEEEEEEeC-CCCCeEeccCCCCCceEEEECCCCCEEEEEEc
Confidence 2222222222223333331 333333322 223333333322 12333444444433358999999999855554
No 313
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.30 E-value=0.00079 Score=63.49 Aligned_cols=168 Identities=14% Similarity=0.169 Sum_probs=105.3
Q ss_pred CCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecC-------CCCeeEEEECCC-------CCEEEEeC-CeEE
Q 007234 118 GGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS-------TKGISCMAVSSD-------GKMLATAA-GQLK 182 (612)
Q Consensus 118 ~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~-------~~~v~~l~~spd-------g~~l~~~~-g~i~ 182 (612)
-.-+-++||||+..|+.+...|+|+++|+.. ..+..+... ...|..+.|-+- .++|+... |.++
T Consensus 44 PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~ 122 (282)
T PF15492_consen 44 PQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLR 122 (282)
T ss_pred chheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceee
Confidence 3457899999999999999999999999864 333343321 235666766542 24455544 7776
Q ss_pred EEEcCC--C---eeEEEEe---cCCCCEEEEEEeeCCcEEEEEEcCCC----------eEEEEEcCCCccccc-------
Q 007234 183 TFNCSD--H---KKMQKFS---GHPGAVRFMTFSDNGKYVLSSAVGER----------YIALWRTDGVKKQSA------- 237 (612)
Q Consensus 183 lwd~~~--~---~~~~~~~---~h~~~v~~l~~sp~~~~l~s~s~~d~----------~i~vwd~~~~~~~~~------- 237 (612)
-|-+.. . +....|. .+...|.++.++|..+.|+.+|.... -+..|.+-.+.+--.
T Consensus 123 Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~ 202 (282)
T PF15492_consen 123 SYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSED 202 (282)
T ss_pred eEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCc
Confidence 665532 2 2233332 24678999999999998888774432 256776644432100
Q ss_pred --------eeeEee---------cCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccC
Q 007234 238 --------SCVLAM---------EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK 291 (612)
Q Consensus 238 --------~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~ 291 (612)
...+.+ ......+--+.. +|||..|++...+|.|.+|++.+.++.+.-+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSl-----SPdg~~La~ih~sG~lsLW~iPsL~~~~~W~ 268 (282)
T PF15492_consen 203 DITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSL-----SPDGSLLACIHFSGSLSLWEIPSLRLQRSWK 268 (282)
T ss_pred cccccccccceeeccceeeeeccccCCCceEEEEE-----CCCCCEEEEEEcCCeEEEEecCcchhhcccc
Confidence 000000 011112222333 4999999999999999999999887765433
No 314
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.28 E-value=0.00024 Score=76.17 Aligned_cols=234 Identities=18% Similarity=0.243 Sum_probs=137.8
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccc-cccccccccccccceeEEEeeecccccccccCCcEEEEEEC--
Q 007234 18 DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTS-LYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG-- 94 (612)
Q Consensus 18 ~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~-- 94 (612)
..++.++.+|.|.-+|.++|+.+..+.......... ..+.+ ..+ +..+++++.
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP------------~v~------------~~~v~vg~~~~ 166 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAP------------TIV------------KKLVIIGSSGA 166 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCC------------EEE------------CCEEEEecccc
Confidence 567778889999999999999998875322110000 00000 000 344556543
Q ss_pred -------CCcEEEEEcCCCeEEEEeccCCCC-------------------Ce-EEEEEecCCCEEEEEecCC--------
Q 007234 95 -------GGDVLALAVSAGQLKWRLSDCHPG-------------------GV-SAISFATHGSCIYSAGADG-------- 139 (612)
Q Consensus 95 -------~g~I~vwd~~~~~~~~~~~~~h~~-------------------~V-~~l~~sp~~~~l~s~s~dg-------- 139 (612)
+|.+..+|..+|+.++++...+.. .| ....+.+.+..++.++.++
T Consensus 167 ~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~ 246 (488)
T cd00216 167 EFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGR 246 (488)
T ss_pred ccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCc
Confidence 577999999999998877432211 01 1234455566777777665
Q ss_pred ----------cEEEEECCCCceeEEEecCCCCe------eEEEEC----CCCC---EEEEeC--CeEEEEEcCCCeeEEE
Q 007234 140 ----------MVCEIDPLTGSLLGKFRASTKGI------SCMAVS----SDGK---MLATAA--GQLKTFNCSDHKKMQK 194 (612)
Q Consensus 140 ----------~v~iwd~~~~~~~~~~~~~~~~v------~~l~~s----pdg~---~l~~~~--g~i~lwd~~~~~~~~~ 194 (612)
.|..+|..+|+.+-.++...... ....+. -+|. .+++++ |.++.+|.++|+.+.+
T Consensus 247 ~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~ 326 (488)
T cd00216 247 RTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISA 326 (488)
T ss_pred cCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeE
Confidence 79999999999887765322111 111111 1343 455565 8999999999998776
Q ss_pred EecCCCCEEEEEEeeCCcEEEEEE-----------------cCCCeEEEEEcCCCccccceeeEeecCC---------ce
Q 007234 195 FSGHPGAVRFMTFSDNGKYVLSSA-----------------VGERYIALWRTDGVKKQSASCVLAMEHP---------AV 248 (612)
Q Consensus 195 ~~~h~~~v~~l~~sp~~~~l~s~s-----------------~~d~~i~vwd~~~~~~~~~~~~~~~~~~---------~~ 248 (612)
..... ..+..+| + .++..+ ..++.+...|+.+++.. ...... ..
T Consensus 327 ~~~~~---~~~~~~~-~-~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~-----W~~~~~~~~~~~~~g~~ 396 (488)
T cd00216 327 RPEVE---QPMAYDP-G-LVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVV-----WEKREGTIRDSWNIGFP 396 (488)
T ss_pred eEeec---cccccCC-c-eEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEe-----eEeeCCccccccccCCc
Confidence 54211 1123333 2 222211 13567777888877644 221111 00
Q ss_pred eE-EeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCC
Q 007234 249 FM-DCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKA 292 (612)
Q Consensus 249 ~~-~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~ 292 (612)
.. .... -.+..|++++.||.|+.+|.++|+.+...+.
T Consensus 397 ~~~~~~~-------~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~ 434 (488)
T cd00216 397 HWGGSLA-------TAGNLVFAGAADGYFRAFDATTGKELWKFRT 434 (488)
T ss_pred ccCcceE-------ecCCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence 00 0111 2457888889999999999999999876553
No 315
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.27 E-value=0.0002 Score=74.66 Aligned_cols=216 Identities=11% Similarity=0.116 Sum_probs=116.6
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEE
Q 007234 10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (612)
Q Consensus 10 ~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (612)
.+.++|+|++++.++ ||...|+.....+.... .......|.+. ..+
T Consensus 37 ~ls~npngr~v~V~g-~geY~iyt~~~~r~k~~-----------------------G~g~~~vw~~~----------n~y 82 (443)
T PF04053_consen 37 SLSHNPNGRFVLVCG-DGEYEIYTALAWRNKAF-----------------------GSGLSFVWSSR----------NRY 82 (443)
T ss_dssp EEEE-TTSSEEEEEE-TTEEEEEETTTTEEEEE-----------------------EE-SEEEE-TS----------SEE
T ss_pred eEEECCCCCEEEEEc-CCEEEEEEccCCccccc-----------------------CceeEEEEecC----------ccE
Confidence 349999999998855 78888888544443321 13345677762 236
Q ss_pred EEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEEEECC
Q 007234 90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSS 169 (612)
Q Consensus 90 ~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~sp 169 (612)
++-..+++|.|+.--.+.....+... ..+..+-. |..|...+. +.|.+||+.+++.++.+... +|..+.|++
T Consensus 83 Av~~~~~~I~I~kn~~~~~~k~i~~~--~~~~~If~---G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~ 154 (443)
T PF04053_consen 83 AVLESSSTIKIYKNFKNEVVKSIKLP--FSVEKIFG---GNLLGVKSS-DFICFYDWETGKLIRRIDVS--AVKYVIWSD 154 (443)
T ss_dssp EEE-TTS-EEEEETTEE-TT-----S--S-EEEEE----SSSEEEEET-TEEEEE-TTT--EEEEESS---E-EEEEE-T
T ss_pred EEEECCCeEEEEEcCccccceEEcCC--cccceEEc---CcEEEEECC-CCEEEEEhhHcceeeEEecC--CCcEEEEEC
Confidence 77777888999633222221122211 23444433 777766654 48999999999999998853 489999999
Q ss_pred CCCEEEEeC-CeEEEEEcCCC-----------eeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccc
Q 007234 170 DGKMLATAA-GQLKTFNCSDH-----------KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA 237 (612)
Q Consensus 170 dg~~l~~~~-g~i~lwd~~~~-----------~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~ 237 (612)
+|++++..+ ..+++++.... ..+..+..-...|.+..|..+ .++.+. .. .++. +-.|+..
T Consensus 155 ~g~~val~t~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT-~~-~lkY--l~~Ge~~-- 226 (443)
T PF04053_consen 155 DGELVALVTKDSIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTT-SN-HLKY--LVNGETG-- 226 (443)
T ss_dssp TSSEEEEE-S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE--TT-EEEE--EETTEEE--
T ss_pred CCCEEEEEeCCeEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEc-CC-eEEE--EEcCCcc--
Confidence 999999888 88888875433 123333332567888899876 444443 23 6776 4455422
Q ss_pred eeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCc
Q 007234 238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (612)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~ 284 (612)
.+..++.+ +-.+... +..+.+.....|+.+..+.+...
T Consensus 227 -~i~~ld~~---~yllgy~-----~~~~~ly~~Dr~~~v~~~~ld~~ 264 (443)
T PF04053_consen 227 -IIAHLDKP---LYLLGYL-----PKENRLYLIDRDGNVISYELDLS 264 (443)
T ss_dssp -EEEE-SS-----EEEEEE-----TTTTEEEEE-TT--EEEEE--HH
T ss_pred -eEEEcCCc---eEEEEEE-----ccCCEEEEEECCCCEEEEEECHH
Confidence 23333333 3333343 55577888888888888876544
No 316
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.25 E-value=0.00011 Score=78.07 Aligned_cols=173 Identities=12% Similarity=0.164 Sum_probs=123.2
Q ss_pred CCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEECCC
Q 007234 17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGG 96 (612)
Q Consensus 17 g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g 96 (612)
+++||.|..+|.|++++.. |.....+ .|+.. +. .|.++++|+.||
T Consensus 49 ~~~~~~GtH~g~v~~~~~~-~~~~~~~-~~s~~---------------------------~~------~Gey~asCS~DG 93 (846)
T KOG2066|consen 49 DKFFALGTHRGAVYLTTCQ-GNPKTNF-DHSSS---------------------------IL------EGEYVASCSDDG 93 (846)
T ss_pred cceeeeccccceEEEEecC-Ccccccc-ccccc---------------------------cc------CCceEEEecCCC
Confidence 6789999999999999875 3332222 12110 11 189999999999
Q ss_pred cEEEEEcCCCeEEEEeccCCCCCeEEEEEecC-----CCEEEEEecCCcEEEEECC--CCceeEEEecCCCCeeEEEECC
Q 007234 97 DVLALAVSAGQLKWRLSDCHPGGVSAISFATH-----GSCIYSAGADGMVCEIDPL--TGSLLGKFRASTKGISCMAVSS 169 (612)
Q Consensus 97 ~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~-----~~~l~s~s~dg~v~iwd~~--~~~~~~~~~~~~~~v~~l~~sp 169 (612)
+|.|..+-+++...++. ...++.+++++|+ .+.+++||.-| +.++.-. ..+.-..+....++|.++.|.
T Consensus 94 kv~I~sl~~~~~~~~~d--f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~- 169 (846)
T KOG2066|consen 94 KVVIGSLFTDDEITQYD--FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR- 169 (846)
T ss_pred cEEEeeccCCccceeEe--cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec-
Confidence 99999998888765542 4578999999998 46799999888 7776521 111111355567899999997
Q ss_pred CCCEEEEeC-CeEEEEEcCCCeeEEEEecCCCCE------EEEEEeeCCcEEEEEEcCCCeEEEEEcCCC
Q 007234 170 DGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAV------RFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (612)
Q Consensus 170 dg~~l~~~~-g~i~lwd~~~~~~~~~~~~h~~~v------~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~ 232 (612)
|.++|-++ --|++||+.+++.+..++.....+ ..+.|.++.+ |+.| +..+|+|..++..
T Consensus 170 -g~lIAWand~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVIG--W~d~v~i~~I~~~ 235 (846)
T KOG2066|consen 170 -GNLIAWANDDGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVIG--WGDSVKICSIKKR 235 (846)
T ss_pred -CcEEEEecCCCcEEEeccccceeeccCCCCCCCCcccCCCceEecCCCe-EEEe--cCCeEEEEEEecc
Confidence 88999888 679999999988877665333322 3467877665 4544 6678999998843
No 317
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.24 E-value=2.4e-05 Score=83.67 Aligned_cols=183 Identities=16% Similarity=0.221 Sum_probs=132.9
Q ss_pred CCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeE
Q 007234 85 GSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISC 164 (612)
Q Consensus 85 ~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~ 164 (612)
++..++.|+-...+..+|+++.+..+.... ..+.|+-++. +++.+++|...|+|.+-|.++.+.++++.+|.+.+..
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v-~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD 222 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNV-SASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD 222 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeec-cCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceee
Confidence 467788888888899999999887755422 2334666655 6788999999999999999999999999999998877
Q ss_pred EEECCCCCEEEEeC--C---------eEEEEEcCCCeeEEEEecCCCCEEEEEEeeCC-cEEEEEEcCCCeEEEEEcCCC
Q 007234 165 MAVSSDGKMLATAA--G---------QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNG-KYVLSSAVGERYIALWRTDGV 232 (612)
Q Consensus 165 l~~spdg~~l~~~~--g---------~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~-~~l~s~s~~d~~i~vwd~~~~ 232 (612)
+.. .|+.|++++ + -|+|||+++.+.+.-+.-+.++ .-+.|+|.= ..+++++ ..|...+-|..+.
T Consensus 223 fDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S-~sGq~q~vd~~~l 298 (1118)
T KOG1275|consen 223 FDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTS-QSGQFQFVDTATL 298 (1118)
T ss_pred eec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEe-cccceeecccccc
Confidence 666 488888876 1 3889999988776666555555 556788753 3455555 5788888884432
Q ss_pred ccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEE
Q 007234 233 KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY 280 (612)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd 280 (612)
..... .++-.......+...+++ ++|..++.|..+|.|.+|.
T Consensus 299 sNP~~-~~~~v~p~~s~i~~fDiS-----sn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 299 SNPPA-GVKMVNPNGSGISAFDIS-----SNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred CCCcc-ceeEEccCCCcceeEEec-----CCCceEEEecccCcEeeec
Confidence 21111 122222222335666676 8999999999999999997
No 318
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.22 E-value=6.7e-05 Score=79.51 Aligned_cols=175 Identities=15% Similarity=0.153 Sum_probs=117.7
Q ss_pred CcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEE
Q 007234 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCM 165 (612)
Q Consensus 86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l 165 (612)
+++++.|+-+|.|++++....- . +. ..|+.. .-+|.+++|||.||+|.+--+-+.+...++. ...++.++
T Consensus 49 ~~~~~~GtH~g~v~~~~~~~~~-~-~~-~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksi 118 (846)
T KOG2066|consen 49 DKFFALGTHRGAVYLTTCQGNP-K-TN-FDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSI 118 (846)
T ss_pred cceeeeccccceEEEEecCCcc-c-cc-cccccc------ccCCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeE
Confidence 7789999999999999987553 2 22 235443 5589999999999999999998888877766 45689999
Q ss_pred EECCC-----CCEEEEeC--CeEEEEEcCC--CeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCcccc
Q 007234 166 AVSSD-----GKMLATAA--GQLKTFNCSD--HKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS 236 (612)
Q Consensus 166 ~~spd-----g~~l~~~~--g~i~lwd~~~--~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~ 236 (612)
+++|+ .+.+++|+ | +.++.-+- .+.-..+....++|.++.|. |.+++-+. ++| |+|||+.+.+...
T Consensus 119 al~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWan-d~G-v~vyd~~~~~~l~ 193 (846)
T KOG2066|consen 119 ALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWAN-DDG-VKVYDTPTRQRLT 193 (846)
T ss_pred EeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEec-CCC-cEEEeccccceee
Confidence 99997 57788888 6 77765321 11111355667899999997 77888875 455 8999998876441
Q ss_pred cee-eEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECC
Q 007234 237 ASC-VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (612)
Q Consensus 237 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~ 282 (612)
... -.....+........|. +...|+.| ...+|++..++
T Consensus 194 ~i~~p~~~~R~e~fpphl~W~------~~~~LVIG-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 194 NIPPPSQSVRPELFPPHLHWQ------DEDRLVIG-WGDSVKICSIK 233 (846)
T ss_pred ccCCCCCCCCcccCCCceEec------CCCeEEEe-cCCeEEEEEEe
Confidence 000 00111222333334453 33445544 33478888776
No 319
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.22 E-value=5.2e-06 Score=86.47 Aligned_cols=200 Identities=21% Similarity=0.268 Sum_probs=130.6
Q ss_pred CCcccceeEEEEcCCC-CEEEEEeCCCcEEEEECCCCcE-EEEeeccCCccccccccccccccccccceeEEEeeecccc
Q 007234 2 GSSNIRDILTSFSPAL-DYFAICSGDARIKIWDTLKGQV-QTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK 79 (612)
Q Consensus 2 ~s~~V~~l~~~fspdg-~~las~s~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~ 79 (612)
++.+|.++ .|.|.. ..+|+++-|-.+..||+++-.. +..+... ....+.+.|.-.++.
T Consensus 113 hsraitd~--n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w------------------~s~asqVkwnyk~p~ 172 (1081)
T KOG0309|consen 113 HSRAITDI--NFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSW------------------RSAASQVKWNYKDPN 172 (1081)
T ss_pred Cccceecc--ccCCCCCcceeeccccccceeeeccCCCcceeeeecc------------------cccCceeeecccCcc
Confidence 35567666 888865 5789999999999999987542 2222211 123445677666543
Q ss_pred cccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEec-CCCEEEEEecCCcEEEEECCCCceeEEE-ec
Q 007234 80 KKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKF-RA 157 (612)
Q Consensus 80 ~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp-~~~~l~s~s~dg~v~iwd~~~~~~~~~~-~~ 157 (612)
+.+.+....|.+||.+.|.......++|...|+.+.|+. -...+.+++.|++|+.||.......... ..
T Consensus 173 ---------vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vt 243 (1081)
T KOG0309|consen 173 ---------VLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVT 243 (1081)
T ss_pred ---------hhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceecc
Confidence 455555566999999988765555577999999999975 2335889999999999998654322221 11
Q ss_pred CCCCeeEEEECCCCCEEEE----eCCeEE---------EEEcCC-CeeEEEEecCCCCEEEEEEeeC--------C--cE
Q 007234 158 STKGISCMAVSSDGKMLAT----AAGQLK---------TFNCSD-HKKMQKFSGHPGAVRFMTFSDN--------G--KY 213 (612)
Q Consensus 158 ~~~~v~~l~~spdg~~l~~----~~g~i~---------lwd~~~-~~~~~~~~~h~~~v~~l~~sp~--------~--~~ 213 (612)
...++..-++-|-|+-... |+..+. .|+..+ .+++..|.||...|..+.|-.. . -.
T Consensus 244 t~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQ 323 (1081)
T KOG0309|consen 244 TNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQ 323 (1081)
T ss_pred ccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCcccee
Confidence 2346666677775543322 112333 344333 3678999999998877666432 1 14
Q ss_pred EEEEEcCCCeEEEEEcCC
Q 007234 214 VLSSAVGERYIALWRTDG 231 (612)
Q Consensus 214 l~s~s~~d~~i~vwd~~~ 231 (612)
|++=+ .|.++++|-+..
T Consensus 324 LVTWS-kD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 324 LVTWS-KDQTLRLWPIDS 340 (1081)
T ss_pred EEEee-cCCceEeeeccH
Confidence 66665 899999998754
No 320
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=7.3e-06 Score=80.84 Aligned_cols=201 Identities=10% Similarity=0.052 Sum_probs=140.4
Q ss_pred CcEEEEEECCCcEEEEEcCC--CeEEEEeccCCCCCeEEEEEecCCCEEEEEec-CCcEEEEECCCCceeEEEecC--CC
Q 007234 86 SSLLVLGTGGGDVLALAVSA--GQLKWRLSDCHPGGVSAISFATHGSCIYSAGA-DGMVCEIDPLTGSLLGKFRAS--TK 160 (612)
Q Consensus 86 ~~~l~~gs~~g~I~vwd~~~--~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~-dg~v~iwd~~~~~~~~~~~~~--~~ 160 (612)
.++++.++.||.++.|-... |.........|-+.|.+++.+.++-.+.|.+. |..++++|+.+...+.-++.. .+
T Consensus 20 a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg 99 (558)
T KOG0882|consen 20 AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPG 99 (558)
T ss_pred hheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCC
Confidence 57899999999999998765 33333344678889999999999998999777 999999999877655443321 22
Q ss_pred CeeEEEECCC-C-CEEEEeC---CeEEEEEcCCCe--eEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCC-
Q 007234 161 GISCMAVSSD-G-KMLATAA---GQLKTFNCSDHK--KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV- 232 (612)
Q Consensus 161 ~v~~l~~spd-g-~~l~~~~---g~i~lwd~~~~~--~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~- 232 (612)
.+ +...+|. - ..++++. |.+.++|-...- ....-.-|.++|..+.++|.+..+++.. ..|.|.-|.....
T Consensus 100 ~a-~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD-~~gmVEyWs~e~~~ 177 (558)
T KOG0882|consen 100 FA-EWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSID-ISGMVEYWSAEGPF 177 (558)
T ss_pred ce-EEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecc-ccceeEeecCCCcc
Confidence 21 2222221 1 2444444 899999976543 2333356899999999999999888875 6899999998731
Q ss_pred ccccceeeEee---------cCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCc
Q 007234 233 KKQSASCVLAM---------EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKAT 293 (612)
Q Consensus 233 ~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~ 293 (612)
+.......+.+ .-......+..|+ |+|..+.+-+.|..|++++.++|+.++.+...
T Consensus 178 qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efs-----p~g~qistl~~DrkVR~F~~KtGklvqeiDE~ 242 (558)
T KOG0882|consen 178 QFPRTNLNFELKHETDLYGFPKAKTEPTSFEFS-----PDGAQISTLNPDRKVRGFVFKTGKLVQEIDEV 242 (558)
T ss_pred cCccccccccccccchhhcccccccCccceEEc-----cccCcccccCcccEEEEEEeccchhhhhhhcc
Confidence 11101111222 2223445667776 99999999999999999999999988766544
No 321
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.18 E-value=0.00084 Score=62.16 Aligned_cols=187 Identities=14% Similarity=0.145 Sum_probs=120.1
Q ss_pred CcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEE
Q 007234 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCM 165 (612)
Q Consensus 86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l 165 (612)
..++++|+..|.+.--|..+|..+++..-+ .++.+-+.- -|++++.|...|.+++.+.++|.+...+.....-=...
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg--~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a 99 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILG--VRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRA 99 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhC--ceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccce
Confidence 578999999999999999999998876533 344433322 36789999999999999999998888877544322344
Q ss_pred EECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEee-CCcEEEEEEcCCCeEEEEEcCCCccccceeeEe
Q 007234 166 AVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSD-NGKYVLSSAVGERYIALWRTDGVKKQSASCVLA 242 (612)
Q Consensus 166 ~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp-~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~ 242 (612)
...+++..+..|+ ++.+..|.++..++.+.+...+.-.+-+..| ++...++. ..|.+.--..+..... ....
T Consensus 100 ~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~--t~G~vlavt~~~~~~~---~~w~ 174 (354)
T KOG4649|consen 100 QCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAI--TAGAVLAVTKNPYSST---EFWA 174 (354)
T ss_pred EEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEe--ccceEEEEccCCCCcc---eehh
Confidence 5678999999998 8999999999998887764444444455666 45443333 3454443333332111 1111
Q ss_pred ecCCceeEEe-EEecCCccCCCCcEEEEEecCCcEEEEECCCcceecc
Q 007234 243 MEHPAVFMDC-RCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRN 289 (612)
Q Consensus 243 ~~~~~~~~~~-~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~ 289 (612)
..-...+... .+. +..+..++.||.+.-++ +.|+++..
T Consensus 175 ~~~~~PiF~splcv--------~~sv~i~~VdG~l~~f~-~sG~qvwr 213 (354)
T KOG4649|consen 175 ATRFGPIFASPLCV--------GSSVIITTVDGVLTSFD-ESGRQVWR 213 (354)
T ss_pred hhcCCccccCceec--------cceEEEEEeccEEEEEc-CCCcEEEe
Confidence 1111111111 111 24566667788888777 66666653
No 322
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.17 E-value=0.00038 Score=73.71 Aligned_cols=102 Identities=14% Similarity=0.142 Sum_probs=74.1
Q ss_pred EecCCCEEEEEecCCcEEEEECCC-----CceeEEEecCCCCeeEEEECCCCCEEEEeC---CeEEEEEcCCCee-----
Q 007234 125 FATHGSCIYSAGADGMVCEIDPLT-----GSLLGKFRASTKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKK----- 191 (612)
Q Consensus 125 ~sp~~~~l~s~s~dg~v~iwd~~~-----~~~~~~~~~~~~~v~~l~~spdg~~l~~~~---g~i~lwd~~~~~~----- 191 (612)
+.++|++... .++.|.+.|..+ .+.+..+.. ......+.++|||+++++++ +++.++|+.+.+.
T Consensus 284 ~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPV-GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~ 360 (635)
T PRK02888 284 AVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPV-PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGK 360 (635)
T ss_pred hhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEEC-CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhcc
Confidence 3457777665 367899999988 355555554 44568999999999999988 7999999987552
Q ss_pred -------EEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCC
Q 007234 192 -------MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (612)
Q Consensus 192 -------~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~ 231 (612)
+.+..--.+| ...+|.++|....+. .-|..|-.|++.+
T Consensus 361 ~~~~~~vvaevevGlGP-LHTaFDg~G~aytsl-f~dsqv~kwn~~~ 405 (635)
T PRK02888 361 IKPRDAVVAEPELGLGP-LHTAFDGRGNAYTTL-FLDSQIVKWNIEA 405 (635)
T ss_pred CCccceEEEeeccCCCc-ceEEECCCCCEEEeE-eecceeEEEehHH
Confidence 3444332333 456899998755554 4789999999876
No 323
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.16 E-value=8.1e-05 Score=77.55 Aligned_cols=188 Identities=11% Similarity=0.102 Sum_probs=126.7
Q ss_pred CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (612)
Q Consensus 2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (612)
|.+.|..+ .|+.+.+.|-++..+|.|.||-+-.|.-..++- .......+.++.|...
T Consensus 70 H~~sV~vv--TWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMi----------------NnRnKSvV~SmsWn~d----- 126 (1189)
T KOG2041|consen 70 HNASVMVV--TWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMI----------------NNRNKSVVVSMSWNLD----- 126 (1189)
T ss_pred CcceEEEE--EeccccccccccCCCceEEEEeeecccHHHHHh----------------hCcCccEEEEEEEcCC-----
Confidence 35667555 999999999999899999999988776544332 1222445667888776
Q ss_pred cccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCC-------ceeEE
Q 007234 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG-------SLLGK 154 (612)
Q Consensus 82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~-------~~~~~ 154 (612)
|..|.+...||.|.|=.+..++.-.+-+++ .....+.|++|.+.++.+-.+|.+.++|.+.. .+...
T Consensus 127 ----G~kIcIvYeDGavIVGsvdGNRIwgKeLkg--~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn 200 (1189)
T KOG2041|consen 127 ----GTKICIVYEDGAVIVGSVDGNRIWGKELKG--QLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVN 200 (1189)
T ss_pred ----CcEEEEEEccCCEEEEeeccceecchhcch--heccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEe
Confidence 778999999999998888776554332222 23457889999998888888999999997532 11111
Q ss_pred ----EecCCCCeeEEEEC--------CCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEc
Q 007234 155 ----FRASTKGISCMAVS--------SDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV 219 (612)
Q Consensus 155 ----~~~~~~~v~~l~~s--------pdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~ 219 (612)
+......+..+.|. ||...++++- |.+.+..-.+......+. ..-.+....|+++|..|+.+|.
T Consensus 201 ~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~d-tgm~~vgakWnh~G~vLAvcG~ 278 (1189)
T KOG2041|consen 201 GTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVD-TGMKIVGAKWNHNGAVLAVCGN 278 (1189)
T ss_pred eeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEe-cccEeecceecCCCcEEEEccC
Confidence 11122235566664 5777777776 777776444332222222 2256788899999999999873
No 324
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=6.3e-05 Score=74.42 Aligned_cols=252 Identities=13% Similarity=0.098 Sum_probs=156.8
Q ss_pred CCCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCC--C-cEEEEeeccCCccccccccccccccccccceeEEEeeecc
Q 007234 1 MGSSNIRDILTSFSPALDYFAICSGDARIKIWDTLK--G-QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVD 77 (612)
Q Consensus 1 ~~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~--~-~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~ 77 (612)
||...|..+ |-.-.+++.+++-||.++.|--.. | +.+..+..|.+.+.+++.+.+
T Consensus 7 mhrd~i~hv---~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~d------------------- 64 (558)
T KOG0882|consen 7 MHRDVITHV---FPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYD------------------- 64 (558)
T ss_pred cccceeeeE---eeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhcccc-------------------
Confidence 444555433 445567999999999999997532 2 234444445554444444444
Q ss_pred cccccccCCcEEEEEEC-CCcEEEEEcCCCeEEEEecc-CCCCCeEEEEEecCC-C-EEEE-EecCCcEEEEECCCCc-e
Q 007234 78 RKKKRKLGSSLLVLGTG-GGDVLALAVSAGQLKWRLSD-CHPGGVSAISFATHG-S-CIYS-AGADGMVCEIDPLTGS-L 151 (612)
Q Consensus 78 ~~~~~~~~~~~l~~gs~-~g~I~vwd~~~~~~~~~~~~-~h~~~V~~l~~sp~~-~-~l~s-~s~dg~v~iwd~~~~~-~ 151 (612)
+.++.+++. |..++++|+..-....-+.. .-.+.+. +..+|.. . .++. .-.++.+.++|-...- +
T Consensus 65 --------g~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~-wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q 135 (558)
T KOG0882|consen 65 --------GWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAE-WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQ 135 (558)
T ss_pred --------ceeEeeccCcccceeEEEeeccchhhhcccccCCCceE-EecCCCCeeeeEEeecccCCCcEEECCcCCcCc
Confidence 667777666 89999999987554321111 1112221 1222221 1 2222 2367899999965443 2
Q ss_pred eEE-EecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCC------Cee---------EEEEecCCCCEEEEEEeeCCcE
Q 007234 152 LGK-FRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSD------HKK---------MQKFSGHPGAVRFMTFSDNGKY 213 (612)
Q Consensus 152 ~~~-~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~------~~~---------~~~~~~h~~~v~~l~~sp~~~~ 213 (612)
... -.-|..+|.++.+.|-+..+++.. |-|.-|.... .+. +..+........++.|+|+|..
T Consensus 136 ~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~q 215 (558)
T KOG0882|consen 136 DGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQ 215 (558)
T ss_pred cceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCc
Confidence 333 344788999999999999999988 8999998763 111 1112223456788999999999
Q ss_pred EEEEEcCCCeEEEEEcCCCccccc------------eeeEee----------------cCCceeEEeEEecCCccCCCCc
Q 007234 214 VLSSAVGERYIALWRTDGVKKQSA------------SCVLAM----------------EHPAVFMDCRCIDNGGVDDAGL 265 (612)
Q Consensus 214 l~s~s~~d~~i~vwd~~~~~~~~~------------~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~ 265 (612)
+.+.+ .|+.|+++++.+++.... ...+.+ .+......-+.|. ..|+
T Consensus 216 istl~-~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fd-----es~~ 289 (558)
T KOG0882|consen 216 ISTLN-PDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFD-----ESGN 289 (558)
T ss_pred ccccC-cccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEc-----CCCC
Confidence 99987 799999999988864310 000000 0112222334454 7889
Q ss_pred EEEEEecCCcEEEEECCCcceeccc
Q 007234 266 YVLAISETGVCYIWYGQNIEELRNT 290 (612)
Q Consensus 266 ~l~t~s~dg~i~iwd~~~~~~~~~~ 290 (612)
+|+-++.=| |++.++.+++..+..
T Consensus 290 flly~t~~g-ikvin~~tn~v~ri~ 313 (558)
T KOG0882|consen 290 FLLYGTILG-IKVINLDTNTVVRIL 313 (558)
T ss_pred EEEeeccee-EEEEEeecCeEEEEe
Confidence 999888754 788898888776643
No 325
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.02 E-value=0.0038 Score=67.31 Aligned_cols=151 Identities=20% Similarity=0.260 Sum_probs=92.3
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEEC---
Q 007234 18 DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG--- 94 (612)
Q Consensus 18 ~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~--- 94 (612)
..++.++.|+.|.-.|..+|+.+..+............+.+ +.. +..+++++.
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP------------~v~------------~g~Vivg~~~~~ 176 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAP------------LVV------------KGKVITGISGGE 176 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCc------------EEE------------CCEEEEeecccc
Confidence 45667778999999999999998876431100000000000 000 345666653
Q ss_pred ---CCcEEEEEcCCCeEEEEeccCCC------------------------------CCeE-EEEEecCCCEEEEEec---
Q 007234 95 ---GGDVLALAVSAGQLKWRLSDCHP------------------------------GGVS-AISFATHGSCIYSAGA--- 137 (612)
Q Consensus 95 ---~g~I~vwd~~~~~~~~~~~~~h~------------------------------~~V~-~l~~sp~~~~l~s~s~--- 137 (612)
+|.|..+|.++|+.++++..... ..++ .+++.|+..+++.+..
T Consensus 177 ~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~ 256 (527)
T TIGR03075 177 FGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPS 256 (527)
T ss_pred cCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCC
Confidence 57899999999999887642211 1111 3356665666665541
Q ss_pred --CC-----------cEEEEECCCCceeEEEecCCCCe---------eEEEECCCCC---EEEEeC--CeEEEEEcCCCe
Q 007234 138 --DG-----------MVCEIDPLTGSLLGKFRASTKGI---------SCMAVSSDGK---MLATAA--GQLKTFNCSDHK 190 (612)
Q Consensus 138 --dg-----------~v~iwd~~~~~~~~~~~~~~~~v---------~~l~~spdg~---~l~~~~--g~i~lwd~~~~~ 190 (612)
++ +|...|+++|+..-.++.....+ .-+.+..+|+ .++.+. |.+++.|-++|+
T Consensus 257 p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~ 336 (527)
T TIGR03075 257 PWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGK 336 (527)
T ss_pred CCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCc
Confidence 12 67888999999887776533221 2223334676 566666 899999999998
Q ss_pred eE
Q 007234 191 KM 192 (612)
Q Consensus 191 ~~ 192 (612)
.+
T Consensus 337 ~i 338 (527)
T TIGR03075 337 LL 338 (527)
T ss_pred ee
Confidence 76
No 326
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.01 E-value=0.0069 Score=62.75 Aligned_cols=189 Identities=14% Similarity=0.156 Sum_probs=131.6
Q ss_pred EEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEec---CCcEEEEECCCCceeEEEecCCCCeeE
Q 007234 88 LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA---DGMVCEIDPLTGSLLGKFRASTKGISC 164 (612)
Q Consensus 88 ~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~---dg~v~iwd~~~~~~~~~~~~~~~~v~~ 164 (612)
..+....++.|.+.|..+.........+. ....++++|+++.++.+.. ++++.+.|-.+++...+......+ ..
T Consensus 88 vyv~~~~~~~v~vid~~~~~~~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~ 164 (381)
T COG3391 88 VYVTTGDSNTVSVIDTATNTVLGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TG 164 (381)
T ss_pred EEEecCCCCeEEEEcCcccceeeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ce
Confidence 45555556889999988888776665444 6789999999988887765 689999999999888886554445 89
Q ss_pred EEECCCCCEEEEeC---CeEEEEEcCCCeeEE-----EEecCCCCEEEEEEeeCCcEEEEEEcCC--CeEEEEEcCCCcc
Q 007234 165 MAVSSDGKMLATAA---GQLKTFNCSDHKKMQ-----KFSGHPGAVRFMTFSDNGKYVLSSAVGE--RYIALWRTDGVKK 234 (612)
Q Consensus 165 l~~spdg~~l~~~~---g~i~lwd~~~~~~~~-----~~~~h~~~v~~l~~sp~~~~l~s~s~~d--~~i~vwd~~~~~~ 234 (612)
++++|+|..++... +.|.+.|.++....+ ...-+. .-..+.+.|+|.++......+ +.+...|..++..
T Consensus 165 ~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~-~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v 243 (381)
T COG3391 165 VAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGT-GPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNV 243 (381)
T ss_pred EEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCC-CCceEEECCCCCEEEEEeccCCCceEEEEeCCCceE
Confidence 99999999777665 899999987766553 122122 235688999999777665333 5788888877653
Q ss_pred ccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEec-CCcEEEEECCCcceecc
Q 007234 235 QSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-TGVCYIWYGQNIEELRN 289 (612)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~-dg~i~iwd~~~~~~~~~ 289 (612)
.. ..... ... ....+... |+|..+.+... .+.+.+-|..+......
T Consensus 244 ~~--~~~~~-~~~-~~~~v~~~-----p~g~~~yv~~~~~~~V~vid~~~~~v~~~ 290 (381)
T COG3391 244 TA--TDLPV-GSG-APRGVAVD-----PAGKAAYVANSQGGTVSVIDGATDRVVKT 290 (381)
T ss_pred EE--ecccc-ccC-CCCceeEC-----CCCCEEEEEecCCCeEEEEeCCCCceeee
Confidence 31 00111 111 22334454 99999888854 47899988877766543
No 327
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.00 E-value=5.3e-06 Score=88.05 Aligned_cols=127 Identities=21% Similarity=0.250 Sum_probs=98.1
Q ss_pred ceeEEEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCC-eEEE
Q 007234 150 SLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER-YIAL 226 (612)
Q Consensus 150 ~~~~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~-~i~v 226 (612)
+..++|+.+....+|++|+-+.++|++|+ |.|++|++.+|.......+|.++|+.+.-+-+|..+++++++.. -..+
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSAL 1171 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHH
Confidence 45566777888999999999999999998 99999999999999999999999999999999998887765555 5679
Q ss_pred EEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecc
Q 007234 227 WRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRN 289 (612)
Q Consensus 227 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~ 289 (612)
|++...-. ..|.-.--.++.|+ .....-+.|+......+||++++..+.+
T Consensus 1172 W~~~s~~~--------~~Hsf~ed~~vkFs-----n~~q~r~~gt~~d~a~~YDvqT~~~l~t 1221 (1516)
T KOG1832|consen 1172 WDASSTGG--------PRHSFDEDKAVKFS-----NSLQFRALGTEADDALLYDVQTCSPLQT 1221 (1516)
T ss_pred hccccccC--------ccccccccceeehh-----hhHHHHHhcccccceEEEecccCcHHHH
Confidence 99876321 12322233456665 3334445566666899999999988765
No 328
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.97 E-value=0.0017 Score=72.38 Aligned_cols=194 Identities=13% Similarity=0.177 Sum_probs=123.3
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcE
Q 007234 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (612)
Q Consensus 9 l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (612)
+++.|--+++-++.+..+|.|.+-|..+...... |.....+.++.|.+. ...
T Consensus 72 ~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eiv-------------------g~vd~GI~aaswS~D---------ee~ 123 (1265)
T KOG1920|consen 72 VSVQFLADTNSICVITALGDIILVDPETLELEIV-------------------GNVDNGISAASWSPD---------EEL 123 (1265)
T ss_pred EEEEEecccceEEEEecCCcEEEEcccccceeee-------------------eeccCceEEEeecCC---------CcE
Confidence 4557777888888888899999988877654321 333445667777665 677
Q ss_pred EEEEECCCcEEEEEc----CCCeEE-------------------EEec--c---------C---------CCCCeEEEEE
Q 007234 89 LVLGTGGGDVLALAV----SAGQLK-------------------WRLS--D---------C---------HPGGVSAISF 125 (612)
Q Consensus 89 l~~gs~~g~I~vwd~----~~~~~~-------------------~~~~--~---------~---------h~~~V~~l~~ 125 (612)
++..+..+++.+-.- -..+.+ .++. . . -.+.=+.++|
T Consensus 124 l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsW 203 (1265)
T KOG1920|consen 124 LALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISW 203 (1265)
T ss_pred EEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEE
Confidence 888888777655332 111110 0110 0 0 0112245899
Q ss_pred ecCCCEEEEEe----cC-CcEEEEECCCCceeEEEecCCCCeeEEEECCCCCEEEEeC-----CeEEEEEcCCCee----
Q 007234 126 ATHGSCIYSAG----AD-GMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKK---- 191 (612)
Q Consensus 126 sp~~~~l~s~s----~d-g~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~-----g~i~lwd~~~~~~---- 191 (612)
-.||+++++.. .+ ..|++||-+ |..-..-....+--.+++|-|.|..+++-. +.|.+|.- +|-.
T Consensus 204 RgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffEr-NGL~hg~f 281 (1265)
T KOG1920|consen 204 RGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFER-NGLRHGEF 281 (1265)
T ss_pred ccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEec-CCcccccc
Confidence 99999988742 23 789999966 544333222333446899999999999764 56888874 3322
Q ss_pred EEEEecCCCCEEEEEEeeCCcEEEE---EEcCCCeEEEEEcCCCc
Q 007234 192 MQKFSGHPGAVRFMTFSDNGKYVLS---SAVGERYIALWRTDGVK 233 (612)
Q Consensus 192 ~~~~~~h~~~v~~l~~sp~~~~l~s---~s~~d~~i~vwd~~~~~ 233 (612)
...++-...+|..++|+.++..|+. .. ....|++|-+.+-.
T Consensus 282 ~l~~p~de~~ve~L~Wns~sdiLAv~~~~~-e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 282 VLPFPLDEKEVEELAWNSNSDILAVVTSNL-ENSLVQLWTTGNYH 325 (1265)
T ss_pred ccCCcccccchheeeecCCCCceeeeeccc-ccceEEEEEecCeE
Confidence 2223334455899999999998877 33 34459999876643
No 329
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.96 E-value=0.0028 Score=67.32 Aligned_cols=176 Identities=11% Similarity=0.108 Sum_probs=113.9
Q ss_pred CCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecC----CcEEEEECCCCceeEEEecCCCCeeEEEECCC
Q 007234 95 GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD----GMVCEIDPLTGSLLGKFRASTKGISCMAVSSD 170 (612)
Q Consensus 95 ~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~d----g~v~iwd~~~~~~~~~~~~~~~~v~~l~~spd 170 (612)
.+.+.+.|..+.+..+++.-+ +....+.++|+|+++++++.+ .++...+......+..|.... ..++.++
T Consensus 214 ~~~vSvID~etmeV~~qV~Vd--gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~----iea~vkd 287 (635)
T PRK02888 214 RSLFTAVDAETMEVAWQVMVD--GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIAR----IEEAVKA 287 (635)
T ss_pred eEEEEEEECccceEEEEEEeC--CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHH----HHHhhhC
Confidence 345788899988887777532 355778899999998888642 233333332222111221110 0134468
Q ss_pred CCEEEEeCCeEEEEEcCC-----CeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccc------c-ce
Q 007234 171 GKMLATAAGQLKTFNCSD-----HKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ------S-AS 238 (612)
Q Consensus 171 g~~l~~~~g~i~lwd~~~-----~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~------~-~~ 238 (612)
|++...+++.|.+.|.++ .+.+..+. -......+.++|||+++++++..+.+|.|.|+.+.+.. . ..
T Consensus 288 GK~~~V~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~ 366 (635)
T PRK02888 288 GKFKTIGGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDA 366 (635)
T ss_pred CCEEEECCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccce
Confidence 888887778999999998 35555555 34456889999999999998877899999999875531 0 00
Q ss_pred eeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCC
Q 007234 239 CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN 283 (612)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~ 283 (612)
.+....- ..-.....|. ++|+...+...|..|..|++.+
T Consensus 367 vvaevev-GlGPLHTaFD-----g~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 367 VVAEPEL-GLGPLHTAFD-----GRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred EEEeecc-CCCcceEEEC-----CCCCEEEeEeecceeEEEehHH
Confidence 1111111 1112234455 7888777888899999999876
No 330
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.96 E-value=4.9e-05 Score=79.43 Aligned_cols=152 Identities=16% Similarity=0.225 Sum_probs=101.2
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEE
Q 007234 11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV 90 (612)
Q Consensus 11 ~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~ 90 (612)
-+++..+++++.|+.-|.+.+|+-..++....-.. + ....++..-.+.+ ..++|
T Consensus 39 Tc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~----------------~--~~~~~~~~~vs~~--------e~lvA 92 (726)
T KOG3621|consen 39 TCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNE----------------G--ATGITCVRSVSSV--------EYLVA 92 (726)
T ss_pred EEeecCCceEEEecccceEEEEecCchhhhccccc----------------C--ccceEEEEEecch--------hHhhh
Confidence 47888999999999999999999887765432110 1 1123333333333 56789
Q ss_pred EEECCCcEEEEEcCCCeE-----EEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCC----ceeEEEecCCCC
Q 007234 91 LGTGGGDVLALAVSAGQL-----KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG----SLLGKFRASTKG 161 (612)
Q Consensus 91 ~gs~~g~I~vwd~~~~~~-----~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~----~~~~~~~~~~~~ 161 (612)
.|+.+|.|.++-++.+.. +......|...|++++|++++..+++|...|+|.+-.+.+. -..+.+-...+.
T Consensus 93 agt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~ 172 (726)
T KOG3621|consen 93 AGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSE 172 (726)
T ss_pred hhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcc
Confidence 999999999998876432 22233457889999999999999999999999999887762 112223333456
Q ss_pred eeEEEECCCCCEEEEeCCeEEEEEcCCC
Q 007234 162 ISCMAVSSDGKMLATAAGQLKTFNCSDH 189 (612)
Q Consensus 162 v~~l~~spdg~~l~~~~g~i~lwd~~~~ 189 (612)
|-.+.+. ++.+|++..-...+++++.+
T Consensus 173 IVQlD~~-q~~LLVStl~r~~Lc~tE~e 199 (726)
T KOG3621|consen 173 IVQLDYL-QSYLLVSTLTRCILCQTEAE 199 (726)
T ss_pred eEEeecc-cceehHhhhhhhheeecchh
Confidence 6666554 34444443355556666544
No 331
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.96 E-value=0.0018 Score=64.25 Aligned_cols=196 Identities=18% Similarity=0.170 Sum_probs=119.8
Q ss_pred CcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecC-----CC
Q 007234 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS-----TK 160 (612)
Q Consensus 86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~-----~~ 160 (612)
+.++.+--..+.|.-|+..+++...-. +.+.+.++..-..+..|+++. .-+.+++.+++..+..+... ..
T Consensus 37 ~~L~w~DI~~~~i~r~~~~~g~~~~~~---~p~~~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~~~~~~~ 111 (307)
T COG3386 37 GALLWVDILGGRIHRLDPETGKKRVFP---SPGGFSSGALIDAGGRLIACE--HGVRLLDPDTGGKITLLAEPEDGLPLN 111 (307)
T ss_pred CEEEEEeCCCCeEEEecCCcCceEEEE---CCCCcccceeecCCCeEEEEc--cccEEEeccCCceeEEeccccCCCCcC
Confidence 445666667778999999877553221 334455555554555666663 33667777666553333221 13
Q ss_pred CeeEEEECCCCCEEEEeC-------------CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEE
Q 007234 161 GISCMAVSSDGKMLATAA-------------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALW 227 (612)
Q Consensus 161 ~v~~l~~spdg~~l~~~~-------------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vw 227 (612)
..+.+.+.|+|.+.++.. |.++-+|. .+..++.+.++-..-+.|+||||++.|+.+-+..+.|..|
T Consensus 112 r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~ 190 (307)
T COG3386 112 RPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRY 190 (307)
T ss_pred CCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEE
Confidence 567888999998877532 34555554 4666666666666668899999999888876556788888
Q ss_pred EcCC--CccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCC-cEEEEECCCcceecccCCc
Q 007234 228 RTDG--VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG-VCYIWYGQNIEELRNTKAT 293 (612)
Q Consensus 228 d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg-~i~iwd~~~~~~~~~~~~~ 293 (612)
++.. +.....................+.. .+|.+-+++..+| .|..|+.+ ++++..+.-.
T Consensus 191 ~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vD-----adG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP 253 (307)
T COG3386 191 DLDPATGPIGGRRGFVDFDEEPGLPDGMAVD-----ADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLP 253 (307)
T ss_pred ecCcccCccCCcceEEEccCCCCCCCceEEe-----CCCCEEEecccCCceEEEECCC-CcEEEEEECC
Confidence 7763 2111111112222223334444554 7777775555554 89999988 8877655544
No 332
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.96 E-value=0.0097 Score=59.79 Aligned_cols=192 Identities=11% Similarity=0.020 Sum_probs=103.7
Q ss_pred CcEEEEEECCCc--EEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCee
Q 007234 86 SSLLVLGTGGGD--VLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGIS 163 (612)
Q Consensus 86 ~~~l~~gs~~g~--I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~ 163 (612)
..+|+.+..+|. +.+.|+.+++..+ +..+-.....+..++|+++.++-......|+..|+.+.+....+......+-
T Consensus 48 ~kllF~s~~dg~~nly~lDL~t~~i~Q-LTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g 126 (386)
T PF14583_consen 48 RKLLFASDFDGNRNLYLLDLATGEITQ-LTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKG 126 (386)
T ss_dssp -EEEEEE-TTSS-EEEEEETTT-EEEE----SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEE
T ss_pred CEEEEEeccCCCcceEEEEcccCEEEE-CccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCccccc
Confidence 355666666666 8888999998874 4333223333567788888877665667899999999887766776666555
Q ss_pred EEEE--CCCCCEEEEeC------------------------CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEE
Q 007234 164 CMAV--SSDGKMLATAA------------------------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSS 217 (612)
Q Consensus 164 ~l~~--spdg~~l~~~~------------------------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~ 217 (612)
...| +.|+..++..- ..|...|+++|+....+. ....+..+.|+|....++.-
T Consensus 127 ~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~f 205 (386)
T PF14583_consen 127 YGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMF 205 (386)
T ss_dssp EEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEEEEETTEEEEEEE
T ss_pred ccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCcccCCCCCCEEEE
Confidence 5555 45677665431 146667888887654444 45678889999977766665
Q ss_pred Ec---CCC-eEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEec-----CCcEEEEECCCcce
Q 007234 218 AV---GER-YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-----TGVCYIWYGQNIEE 286 (612)
Q Consensus 218 s~---~d~-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~-----dg~i~iwd~~~~~~ 286 (612)
|. ++. .-+||-+++..... .++... .......--+|. +||..+.--+. +..|.-+|+.+++.
T Consensus 206 CHEGpw~~Vd~RiW~i~~dg~~~-~~v~~~-~~~e~~gHEfw~-----~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~ 276 (386)
T PF14583_consen 206 CHEGPWDLVDQRIWTINTDGSNV-KKVHRR-MEGESVGHEFWV-----PDGSTIWYDSYTPGGQDFWIAGYDPDTGER 276 (386)
T ss_dssp EE-S-TTTSS-SEEEEETTS----EESS----TTEEEEEEEE------TTSS-EEEEEEETTT--EEEEEE-TTT--E
T ss_pred eccCCcceeceEEEEEEcCCCcc-eeeecC-CCCccccccccc-----CCCCEEEEEeecCCCCceEEEeeCCCCCCc
Confidence 42 222 24778776543221 122221 234455555666 88887766443 33566677887754
No 333
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.94 E-value=0.003 Score=65.72 Aligned_cols=157 Identities=12% Similarity=0.055 Sum_probs=100.8
Q ss_pred CCCCeEEEEEecCCCEEEEEe---cC-CcEEEEECCCCceeEEEecCCCCeeEEEECCCCCEEEEeC---C--eEEEEEc
Q 007234 116 HPGGVSAISFATHGSCIYSAG---AD-GMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA---G--QLKTFNC 186 (612)
Q Consensus 116 h~~~V~~l~~sp~~~~l~s~s---~d-g~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~---g--~i~lwd~ 186 (612)
-...+..-+|+|+++.++-.+ .. ..+.++|+.+++...... ..+.-...+|+|||+.|+... | .|+++|+
T Consensus 191 ~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl 269 (425)
T COG0823 191 SGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDL 269 (425)
T ss_pred cCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcC
Confidence 345677788999998765443 22 459999999887665554 223334578999999998776 3 7889999
Q ss_pred CCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEE--EEcCCCccccceeeEeecCCceeEEeEEecCCccCCCC
Q 007234 187 SDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIAL--WRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAG 264 (612)
Q Consensus 187 ~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~v--wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (612)
.++.. ..+..-.+.-..-.|+|||++++..++..|.-.| .+.+..... ..+....... .-.+ +|||
T Consensus 270 ~~~~~-~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~----riT~~~~~~~--~p~~-----SpdG 337 (425)
T COG0823 270 DGKNL-PRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVT----RLTFSGGGNS--NPVW-----SPDG 337 (425)
T ss_pred CCCcc-eecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCcee----EeeccCCCCc--CccC-----CCCC
Confidence 88774 3354334444467899999999998866665444 455554422 1222221211 2333 4999
Q ss_pred cEEEEEec-CCc--EEEEECCCcc
Q 007234 265 LYVLAISE-TGV--CYIWYGQNIE 285 (612)
Q Consensus 265 ~~l~t~s~-dg~--i~iwd~~~~~ 285 (612)
++++..+. +|. |.+.|+.++.
T Consensus 338 ~~i~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 338 DKIVFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred CEEEEEeccCCceeeEEeccCCCC
Confidence 99888875 354 5556665554
No 334
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.90 E-value=0.0056 Score=65.71 Aligned_cols=195 Identities=13% Similarity=0.217 Sum_probs=116.0
Q ss_pred CCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCC-cEEEEEECC
Q 007234 17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGS-SLLVLGTGG 95 (612)
Q Consensus 17 g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~-~~l~~gs~~ 95 (612)
+..+..++.++.|.-.|..+|+.+..++........ .... .... ...+ + ..+++++.+
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~--~~~~-----~~~g--~~~~------------~~~~V~v~~~~ 119 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRG--CCDV-----VNRG--VAYW------------DPRKVFFGTFD 119 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCcccc--cccc-----ccCC--cEEc------------cCCeEEEecCC
Confidence 345666777899999999999988877533220000 0000 0000 0000 3 678899999
Q ss_pred CcEEEEEcCCCeEEEEeccCCCC----Ce-EEEEEecCCCEEEEEe---------cCCcEEEEECCCCceeEEEecCCCC
Q 007234 96 GDVLALAVSAGQLKWRLSDCHPG----GV-SAISFATHGSCIYSAG---------ADGMVCEIDPLTGSLLGKFRASTKG 161 (612)
Q Consensus 96 g~I~vwd~~~~~~~~~~~~~h~~----~V-~~l~~sp~~~~l~s~s---------~dg~v~iwd~~~~~~~~~~~~~~~~ 161 (612)
|.|.-+|.++|+.++++...-.. .+ .+..+. +..++.++ .++.+..+|..+|+.+-.++.....
T Consensus 120 g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~ 197 (488)
T cd00216 120 GRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPD 197 (488)
T ss_pred CeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCC
Confidence 99999999999999887432110 01 112222 23455553 3688999999999988776542110
Q ss_pred --------------------e-eEEEECCCCCEEEEeC--C------------------eEEEEEcCCCeeEEEEecCCC
Q 007234 162 --------------------I-SCMAVSSDGKMLATAA--G------------------QLKTFNCSDHKKMQKFSGHPG 200 (612)
Q Consensus 162 --------------------v-~~l~~spdg~~l~~~~--g------------------~i~lwd~~~~~~~~~~~~h~~ 200 (612)
+ .+.++.+.+..++.+. + .|.-+|.++|+.+-++..-..
T Consensus 198 ~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~ 277 (488)
T cd00216 198 PNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPH 277 (488)
T ss_pred cCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCC
Confidence 1 1344555556666664 3 699999999998877642111
Q ss_pred CE------EEEEEe----eCCc---EEEEEEcCCCeEEEEEcCCCccc
Q 007234 201 AV------RFMTFS----DNGK---YVLSSAVGERYIALWRTDGVKKQ 235 (612)
Q Consensus 201 ~v------~~l~~s----p~~~---~l~s~s~~d~~i~vwd~~~~~~~ 235 (612)
.. ....+. -++. .++.++ .+|.+...|..+++..
T Consensus 278 ~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~-~~G~l~ald~~tG~~~ 324 (488)
T cd00216 278 DLWDYDGPNQPSLADIKPKDGKPVPAIVHAP-KNGFFYVLDRTTGKLI 324 (488)
T ss_pred CCcccccCCCCeEEeccccCCCeeEEEEEEC-CCceEEEEECCCCcEe
Confidence 11 011111 1232 355554 7899999999999855
No 335
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.88 E-value=0.00091 Score=73.58 Aligned_cols=146 Identities=15% Similarity=0.138 Sum_probs=98.6
Q ss_pred CEEEEE-eCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEECCC
Q 007234 18 DYFAIC-SGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGG 96 (612)
Q Consensus 18 ~~las~-s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g 96 (612)
++|..- ...+.|.-.|++.|+.+.+++.+.... -..|.++ . +..+..+...++|-.+.
T Consensus 494 ~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~-v~~~~p~------------------~--K~aqlt~e~tflGls~n 552 (794)
T PF08553_consen 494 NMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIP-VVDIAPD------------------S--KFAQLTNEQTFLGLSDN 552 (794)
T ss_pred ceEeecCCCCCceEEEecCCCcEEEEeecCCCcc-eeEeccc------------------c--cccccCCCceEEEECCC
Confidence 444443 345778888999999999998665431 1111111 0 00111145578899999
Q ss_pred cEEEEEcCCCe--EEEEec--cCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeE-EEecCCCCeeEEEECCCC
Q 007234 97 DVLALAVSAGQ--LKWRLS--DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLG-KFRASTKGISCMAVSSDG 171 (612)
Q Consensus 97 ~I~vwd~~~~~--~~~~~~--~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~v~~l~~spdg 171 (612)
.+..||++-.. ++..-. .......+|++-+.+| +|++|+.+|.||+||- .|+.-. .+.+-..+|.+|..+.||
T Consensus 553 ~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DG 630 (794)
T PF08553_consen 553 SLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADG 630 (794)
T ss_pred ceEEeccCCCCCceeeccccccccCCCceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCC
Confidence 99999998642 332111 1233456788777766 6999999999999994 444433 366667899999999999
Q ss_pred CEEEEeC-CeEEEEEc
Q 007234 172 KMLATAA-GQLKTFNC 186 (612)
Q Consensus 172 ~~l~~~~-g~i~lwd~ 186 (612)
+++++.+ ..+.+++.
T Consensus 631 kwilaTc~tyLlLi~t 646 (794)
T PF08553_consen 631 KWILATCKTYLLLIDT 646 (794)
T ss_pred cEEEEeecceEEEEEE
Confidence 9998887 77888775
No 336
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.86 E-value=0.00011 Score=69.25 Aligned_cols=192 Identities=15% Similarity=0.141 Sum_probs=120.9
Q ss_pred CcEEEEEECCCcEEEEEcCCCe-EEEEe---ccCCC------------CCeEEEEEecCCC--EEEEEecCCcEEEEECC
Q 007234 86 SSLLVLGTGGGDVLALAVSAGQ-LKWRL---SDCHP------------GGVSAISFATHGS--CIYSAGADGMVCEIDPL 147 (612)
Q Consensus 86 ~~~l~~gs~~g~I~vwd~~~~~-~~~~~---~~~h~------------~~V~~l~~sp~~~--~l~s~s~dg~v~iwd~~ 147 (612)
|.++++|...|.|.+|.-.... |...+ +++|. ..|..+.|..+++ .++..+.|.+|++|.+.
T Consensus 38 g~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdktiKlWKiy 117 (460)
T COG5170 38 GLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIY 117 (460)
T ss_pred cceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCCceeeeeeee
Confidence 7889999999999999765432 21111 23343 3578888876543 46667799999999865
Q ss_pred CCc------------------------------------------eeEEE-ecCCCCeeEEEECCCCCEEEEeC-CeEEE
Q 007234 148 TGS------------------------------------------LLGKF-RASTKGISCMAVSSDGKMLATAA-GQLKT 183 (612)
Q Consensus 148 ~~~------------------------------------------~~~~~-~~~~~~v~~l~~spdg~~l~~~~-g~i~l 183 (612)
... +.+.. ..|..-+.++.|..|...++++. =.|.+
T Consensus 118 eknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et~lSaDdLrINL 197 (460)
T COG5170 118 EKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKETLLSADDLRINL 197 (460)
T ss_pred cccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchheeeeccceeeee
Confidence 320 00011 23455678999999999999998 68999
Q ss_pred EEcCCCee---EEEEecCC-----CCEEEEEEeeCCc-EEEEEEcCCCeEEEEEcCCCcccc-ceeeEee----------
Q 007234 184 FNCSDHKK---MQKFSGHP-----GAVRFMTFSDNGK-YVLSSAVGERYIALWRTDGVKKQS-ASCVLAM---------- 243 (612)
Q Consensus 184 wd~~~~~~---~~~~~~h~-----~~v~~l~~sp~~~-~l~s~s~~d~~i~vwd~~~~~~~~-~~~~~~~---------- 243 (612)
|++.-... +-.++.|. .-|++..|+|... .+..++ ..|.|++-|++....-. ....+..
T Consensus 198 Wnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSs-SkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff 276 (460)
T COG5170 198 WNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSS-SKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFF 276 (460)
T ss_pred ccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEec-CCCcEEehhhhhhhhccCchhhhhhccCcccchhH
Confidence 99864322 22334443 3477889998654 333444 48999999998432110 0001111
Q ss_pred cCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCc
Q 007234 244 EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (612)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~ 284 (612)
..-...++-..|+ ++|+++++-+. -++++||....
T Consensus 277 ~eivsSISD~kFs-----~ngryIlsRdy-ltvkiwDvnm~ 311 (460)
T COG5170 277 EEIVSSISDFKFS-----DNGRYILSRDY-LTVKIWDVNMA 311 (460)
T ss_pred HHHhhhhcceEEc-----CCCcEEEEecc-ceEEEEecccc
Confidence 1112234445565 99999887665 48999998654
No 337
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.85 E-value=0.017 Score=57.00 Aligned_cols=193 Identities=13% Similarity=0.183 Sum_probs=123.8
Q ss_pred EEcCCCCEEEEEeC--CCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEE
Q 007234 12 SFSPALDYFAICSG--DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (612)
Q Consensus 12 ~fspdg~~las~s~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (612)
++|+||+++...-. .-+|.|-|+..++.+.++... .|..-.|.. +.-+
T Consensus 101 ~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P----------------------GC~~iyP~~--------~~~F 150 (342)
T PF06433_consen 101 ALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP----------------------GCWLIYPSG--------NRGF 150 (342)
T ss_dssp EE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT----------------------SEEEEEEEE--------TTEE
T ss_pred EEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC----------------------CEEEEEecC--------CCce
Confidence 89999998876543 567999999999998887521 133333333 4458
Q ss_pred EEEECCCcEEEEEcC-CCeEEEE---eccCCCCCe-EEEEEecCCCEEEEEecCCcEEEEECCCCce--eEEEecC----
Q 007234 90 VLGTGGGDVLALAVS-AGQLKWR---LSDCHPGGV-SAISFATHGSCIYSAGADGMVCEIDPLTGSL--LGKFRAS---- 158 (612)
Q Consensus 90 ~~gs~~g~I~vwd~~-~~~~~~~---~~~~h~~~V-~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~--~~~~~~~---- 158 (612)
.+-|.||.+.-..+. .|+...+ ++..-..++ ..-.+...+..++--+.+|.|+--|+..... ...+...
T Consensus 151 ~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e 230 (342)
T PF06433_consen 151 SMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAE 230 (342)
T ss_dssp EEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHH
T ss_pred EEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccc
Confidence 899999998888887 4554322 222222222 2334555555566678899999988865532 2222211
Q ss_pred ------CCCeeEEEECCCCCEEEEeC------------CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCc-EEEEEEc
Q 007234 159 ------TKGISCMAVSSDGKMLATAA------------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGK-YVLSSAV 219 (612)
Q Consensus 159 ------~~~v~~l~~spdg~~l~~~~------------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~-~l~s~s~ 219 (612)
.+.-.-+++++....|++-- ..|.++|+.+++.+.++.. ..++.+|..+.+.+ +|++.+.
T Consensus 231 ~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~ 309 (342)
T PF06433_consen 231 KADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSA 309 (342)
T ss_dssp HHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEET
T ss_pred cccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcC
Confidence 12445678887665555421 2799999999999999874 34577999998876 5555444
Q ss_pred CCCeEEEEEcCCCccc
Q 007234 220 GERYIALWRTDGVKKQ 235 (612)
Q Consensus 220 ~d~~i~vwd~~~~~~~ 235 (612)
.++.+.+||..+++..
T Consensus 310 ~~~~l~v~D~~tGk~~ 325 (342)
T PF06433_consen 310 GDGTLDVYDAATGKLV 325 (342)
T ss_dssp TTTEEEEEETTT--EE
T ss_pred CCCeEEEEeCcCCcEE
Confidence 6899999999999754
No 338
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.85 E-value=0.0069 Score=59.68 Aligned_cols=178 Identities=16% Similarity=0.147 Sum_probs=112.7
Q ss_pred CcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEe----------cCCcEEEEECCCCceeEEEecCCC-----
Q 007234 96 GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG----------ADGMVCEIDPLTGSLLGKFRASTK----- 160 (612)
Q Consensus 96 g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s----------~dg~v~iwd~~~~~~~~~~~~~~~----- 160 (612)
+.+.|+|..+++.+..+..+.. -.+..+|+++.+++++ ..-.|.+||..+-.....+.-...
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~~---~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~ 93 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGFL---GNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQV 93 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEESS---EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--B
T ss_pred ceEEEEECCCCcEEEEeecccC---CceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhee
Confidence 4699999999999887755443 3466899999988764 234699999999988776554332
Q ss_pred --CeeEEEECCCCCEEEEeC----CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCcc
Q 007234 161 --GISCMAVSSDGKMLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK 234 (612)
Q Consensus 161 --~v~~l~~spdg~~l~~~~----g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~ 234 (612)
.....+++.||+++++.. .+|.|.|+..++.+.++... .+..+--+++. -|.+.| .||.+.-..+....+
T Consensus 94 ~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P--GC~~iyP~~~~-~F~~lC-~DGsl~~v~Ld~~Gk 169 (342)
T PF06433_consen 94 VPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP--GCWLIYPSGNR-GFSMLC-GDGSLLTVTLDADGK 169 (342)
T ss_dssp S--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT--SEEEEEEEETT-EEEEEE-TTSCEEEEEETSTSS
T ss_pred cccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC--CEEEEEecCCC-ceEEEe-cCCceEEEEECCCCC
Confidence 223468899999999876 69999999999999888632 22333223333 455666 699999999884332
Q ss_pred ccceeeEeecC-CceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcc
Q 007234 235 QSASCVLAMEH-PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE 285 (612)
Q Consensus 235 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~ 285 (612)
........+.. .........+. ..+..++-.+.+|.|+--|+....
T Consensus 170 ~~~~~t~~F~~~~dp~f~~~~~~-----~~~~~~~F~Sy~G~v~~~dlsg~~ 216 (342)
T PF06433_consen 170 EAQKSTKVFDPDDDPLFEHPAYS-----RDGGRLYFVSYEGNVYSADLSGDS 216 (342)
T ss_dssp EEEEEEEESSTTTS-B-S--EEE-----TTTTEEEEEBTTSEEEEEEETTSS
T ss_pred EeEeeccccCCCCcccccccceE-----CCCCeEEEEecCCEEEEEeccCCc
Confidence 21111111111 11122122222 344555558889999888865543
No 339
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.83 E-value=0.00014 Score=75.03 Aligned_cols=91 Identities=18% Similarity=0.161 Sum_probs=68.8
Q ss_pred EEEEEcCCCeEE--EEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEEEECCCCCEEE
Q 007234 98 VLALAVSAGQLK--WRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLA 175 (612)
Q Consensus 98 I~vwd~~~~~~~--~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~ 175 (612)
-.+|++..++.. ....-...+.|.+++++|+...|+.|+.||+|.+||...+... +....-.++.++|+|+|.+++
T Consensus 238 ~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~ 315 (545)
T PF11768_consen 238 SCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFV 315 (545)
T ss_pred EEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEE
Confidence 345666555422 1111246788999999999999999999999999998766332 323345678999999999999
Q ss_pred EeC--CeEEEEEcCCCe
Q 007234 176 TAA--GQLKTFNCSDHK 190 (612)
Q Consensus 176 ~~~--g~i~lwd~~~~~ 190 (612)
+|+ |.+.+||+.-..
T Consensus 316 V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 316 VGSEQGELQCFDMALSP 332 (545)
T ss_pred EEcCCceEEEEEeecCc
Confidence 998 999999986543
No 340
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.82 E-value=0.039 Score=58.09 Aligned_cols=238 Identities=12% Similarity=0.117 Sum_probs=125.4
Q ss_pred EEEEcCCCCEEEEE-eCCC----cEEEEECCCCcEEEEe-eccCCccccccccccccccccccceeEEEeeecccccccc
Q 007234 10 LTSFSPALDYFAIC-SGDA----RIKIWDTLKGQVQTEF-ADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (612)
Q Consensus 10 ~~~fspdg~~las~-s~dg----~i~iwd~~~~~~~~~~-~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (612)
..++||||+++|.+ +..| .|+|+|+.+|+.+... . ......+.|...+
T Consensus 128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~--------------------~~~~~~~~W~~d~------ 181 (414)
T PF02897_consen 128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIE--------------------NPKFSSVSWSDDG------ 181 (414)
T ss_dssp EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEE--------------------EEESEEEEECTTS------
T ss_pred eeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccc--------------------ccccceEEEeCCC------
Confidence 35899999999966 3334 5999999999766432 1 1122237776653
Q ss_pred cCCcEEEEEECCC----------cEEEEEcCCCeEE-EEeccCCC-CC-eEEEEEecCCCEEEEEec---C-CcEEEEEC
Q 007234 84 LGSSLLVLGTGGG----------DVLALAVSAGQLK-WRLSDCHP-GG-VSAISFATHGSCIYSAGA---D-GMVCEIDP 146 (612)
Q Consensus 84 ~~~~~l~~gs~~g----------~I~vwd~~~~~~~-~~~~~~h~-~~-V~~l~~sp~~~~l~s~s~---d-g~v~iwd~ 146 (612)
..++.+..... .|+.|.+.++... ..+..... .. ...+..++|+++++..+. + ..+.+.|+
T Consensus 182 --~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~ 259 (414)
T PF02897_consen 182 --KGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDL 259 (414)
T ss_dssp --SEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEEC
T ss_pred --CEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEec
Confidence 23344443331 2788888776432 11222222 22 678889999999765432 2 34788888
Q ss_pred CCC----ceeEEEecCCCCee-EEEECCCCCEEEEeC-----CeEEEEEcCCCee---EEEEecCCCCEEEEEEeeCCcE
Q 007234 147 LTG----SLLGKFRASTKGIS-CMAVSSDGKMLATAA-----GQLKTFNCSDHKK---MQKFSGHPGAVRFMTFSDNGKY 213 (612)
Q Consensus 147 ~~~----~~~~~~~~~~~~v~-~l~~spdg~~l~~~~-----g~i~lwd~~~~~~---~~~~~~h~~~v~~l~~sp~~~~ 213 (612)
..+ .....+......+. .+... .+.+++... +.|.-.++..... ...+..|...+.--.+...+.+
T Consensus 260 ~~~~~~~~~~~~l~~~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~ 338 (414)
T PF02897_consen 260 DDGGSPDAKPKLLSPREDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDY 338 (414)
T ss_dssp CCTTTSS-SEEEEEESSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTE
T ss_pred cccCCCcCCcEEEeCCCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCE
Confidence 764 23334433333343 34343 444544443 5777788877652 3355556664444444555666
Q ss_pred EEEEEcCCC--eEEEEEcC-CCccccceeeEeecCCceeEEeEEecCCccCCCCc-EEEEE-ec--CCcEEEEECCCcce
Q 007234 214 VLSSAVGER--YIALWRTD-GVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGL-YVLAI-SE--TGVCYIWYGQNIEE 286 (612)
Q Consensus 214 l~s~s~~d~--~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~t~-s~--dg~i~iwd~~~~~~ 286 (612)
|+..-..++ .|+++++. +.... ...+..... +...... +++. +.+.. |. -+++..||+.+++.
T Consensus 339 Lvl~~~~~~~~~l~v~~~~~~~~~~----~~~~p~~g~-v~~~~~~-----~~~~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 339 LVLSYRENGSSRLRVYDLDDGKESR----EIPLPEAGS-VSGVSGD-----FDSDELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp EEEEEEETTEEEEEEEETT-TEEEE----EEESSSSSE-EEEEES------TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred EEEEEEECCccEEEEEECCCCcEEe----eecCCcceE-EeccCCC-----CCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 666554455 58888888 33211 122222222 2222222 3333 33333 32 46888889888865
No 341
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.79 E-value=0.0026 Score=68.42 Aligned_cols=191 Identities=17% Similarity=0.229 Sum_probs=120.0
Q ss_pred CcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCC-eEEEEEecCCCEEEEEecCC-----cEEEEECCCC------cee-
Q 007234 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGG-VSAISFATHGSCIYSAGADG-----MVCEIDPLTG------SLL- 152 (612)
Q Consensus 86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~-V~~l~~sp~~~~l~s~s~dg-----~v~iwd~~~~------~~~- 152 (612)
+..++.|+.+|.|.+++-.-. .+..+ .++... |+.+....+..+|++.+.|+ .+++||++.- +++
T Consensus 35 ~~~vvigt~~G~V~~Ln~s~~-~~~~f-qa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~ 112 (933)
T KOG2114|consen 35 TGSVVIGTADGRVVILNSSFQ-LIRGF-QAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLY 112 (933)
T ss_pred CceEEEeeccccEEEecccce-eeehh-eecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceee
Confidence 678999999999988874322 21222 445555 55554444446788877665 4999998632 333
Q ss_pred --EEEe--c--CCCCeeEEEECCCCCEEEEeC--CeEEEEEcC--C--CeeEEEEecCCCCEEEEEEeeCCcEEEEEEcC
Q 007234 153 --GKFR--A--STKGISCMAVSSDGKMLATAA--GQLKTFNCS--D--HKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVG 220 (612)
Q Consensus 153 --~~~~--~--~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~--~--~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~ 220 (612)
+.+. . ...++.+++++.+-+.+|+|- |.|..+.-+ . +....-...-..+|+.+.+..+++.++... .
T Consensus 113 ~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~-T 191 (933)
T KOG2114|consen 113 EHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVA-T 191 (933)
T ss_pred eeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEE-e
Confidence 1111 1 245889999999988888886 888877421 1 111222223457899999999888622222 2
Q ss_pred CCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecc
Q 007234 221 ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRN 289 (612)
Q Consensus 221 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~ 289 (612)
-..|.+|.+.... + ......+++..+.+..++ +....+++++. ..+.+|+.+....-..
T Consensus 192 t~~V~~y~l~gr~-p---~~~~ld~~G~~lnCss~~-----~~t~qfIca~~-e~l~fY~sd~~~~cfa 250 (933)
T KOG2114|consen 192 TEQVMLYSLSGRT-P---SLKVLDNNGISLNCSSFS-----DGTYQFICAGS-EFLYFYDSDGRGPCFA 250 (933)
T ss_pred cceeEEEEecCCC-c---ceeeeccCCccceeeecC-----CCCccEEEecC-ceEEEEcCCCcceeee
Confidence 4679999998443 2 244567788888888886 33333444443 3688998765444333
No 342
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.78 E-value=0.014 Score=58.98 Aligned_cols=180 Identities=18% Similarity=0.182 Sum_probs=105.7
Q ss_pred CcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEEC---------C-C
Q 007234 27 ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG---------G-G 96 (612)
Q Consensus 27 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~---------~-g 96 (612)
..|++.|..+.+.+..+.-.. .....++.-........ ....++++|+. . |
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~-----------------~E~~~s~~~~~l~~~~~--~~~~~ivVGT~~~~~~~~~~~~G 62 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEP-----------------NEHVTSLCSVKLKGDST--GKKEYIVVGTAFNYGEDPEPSSG 62 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEET-----------------TEEEEEEEEEEETTS-----SSEEEEEEEEE--TTSSS-S-E
T ss_pred cEEEEEeCCCCeEEEEEECCC-----------------CceEEEEEEEEEcCccc--cccCEEEEEecccccccccccCc
Confidence 358899998888777664211 22333333322221100 01578888875 2 8
Q ss_pred cEEEEEcCCC-----eEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCc-eeEEE-ecCCCCeeEEEECC
Q 007234 97 DVLALAVSAG-----QLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS-LLGKF-RASTKGISCMAVSS 169 (612)
Q Consensus 97 ~I~vwd~~~~-----~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~-~~~~~-~~~~~~v~~l~~sp 169 (612)
.|.+|++... +..........++|++++-- ++ .|+.+ ..+.|.+|++...+ ....- ......+.++...
T Consensus 63 ri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~-~lv~~-~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~- 138 (321)
T PF03178_consen 63 RILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NG-RLVVA-VGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF- 138 (321)
T ss_dssp EEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TT-EEEEE-ETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE-
T ss_pred EEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CC-EEEEe-ecCEEEEEEccCcccchhhheecceEEEEEEecc-
Confidence 8999999984 33222223457889999876 34 44444 45889999998777 43332 2122356666655
Q ss_pred CCCEEEEeC--CeEEEEEcCC-CeeEEEEe--cCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCC
Q 007234 170 DGKMLATAA--GQLKTFNCSD-HKKMQKFS--GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (612)
Q Consensus 170 dg~~l~~~~--g~i~lwd~~~-~~~~~~~~--~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~ 231 (612)
+.++++|+ ..+.++..+. +..+..+. .....++++.|-++++.++.+. .+|.+.++....
T Consensus 139 -~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D-~~gnl~~l~~~~ 203 (321)
T PF03178_consen 139 -KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGD-KDGNLFVLRYNP 203 (321)
T ss_dssp -TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEE-TTSEEEEEEE-S
T ss_pred -ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEc-CCCeEEEEEECC
Confidence 56888888 6676664432 33233332 2345688889987777666664 799999998763
No 343
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.78 E-value=5.2e-06 Score=85.40 Aligned_cols=199 Identities=10% Similarity=0.135 Sum_probs=127.3
Q ss_pred cceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEE-EEeeccCCccccccccccccccccccceeEEEeeeccccccccc
Q 007234 6 IRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQ-TEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (612)
Q Consensus 6 V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (612)
+++++.-+..|...++.|..+|.|.+-..+...-. +++. ......+++++|.+-+
T Consensus 59 ~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~t-----------------p~~ar~Ct~lAwneLD------- 114 (783)
T KOG1008|consen 59 VKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVT-----------------PGYARPCTSLAWNELD------- 114 (783)
T ss_pred ceeehhhcCCchhhhhhccccCceEEeecCCcccccceec-----------------cccccccccccccccc-------
Confidence 44443334445457889999999998876543221 1111 1225578999998876
Q ss_pred CCcEEEEEEC----CCcEEEEEcCCCe--E--EEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCC-ceeEEE
Q 007234 85 GSSLLVLGTG----GGDVLALAVSAGQ--L--KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG-SLLGKF 155 (612)
Q Consensus 85 ~~~~l~~gs~----~g~I~vwd~~~~~--~--~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~-~~~~~~ 155 (612)
.+.+|+|-. +-.+.|||+.++- + ...+..+......+++|-.+.+.+.+|.....+.++|++.. .....+
T Consensus 115 -tn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv 193 (783)
T KOG1008|consen 115 -TNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV 193 (783)
T ss_pred -HHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh
Confidence 455666643 3449999998872 1 22232223455668889888888999988889999998722 222222
Q ss_pred ecCCCCeeEEEECC-CCCEEEEeC-CeEEEEE-cCCC-eeEEEEecCC----CCEEEEEEeeCCc-EEEEEEcCCCeEEE
Q 007234 156 RASTKGISCMAVSS-DGKMLATAA-GQLKTFN-CSDH-KKMQKFSGHP----GAVRFMTFSDNGK-YVLSSAVGERYIAL 226 (612)
Q Consensus 156 ~~~~~~v~~l~~sp-dg~~l~~~~-g~i~lwd-~~~~-~~~~~~~~h~----~~v~~l~~sp~~~-~l~s~s~~d~~i~v 226 (612)
....+..+.+.| .+.++++-. |.|.+|| ...- .++..+...+ ..+..++|+|... .+++.....++|++
T Consensus 194 --nTk~vqG~tVdp~~~nY~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrl 271 (783)
T KOG1008|consen 194 --NTKYVQGITVDPFSPNYFCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRL 271 (783)
T ss_pred --hhhhcccceecCCCCCceeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEE
Confidence 234567788888 788888877 9999999 3322 2233332222 2488999998654 34455545679999
Q ss_pred EEcCC
Q 007234 227 WRTDG 231 (612)
Q Consensus 227 wd~~~ 231 (612)
+|+..
T Consensus 272 ydi~~ 276 (783)
T KOG1008|consen 272 YDICV 276 (783)
T ss_pred ecccc
Confidence 99754
No 344
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.75 E-value=0.0018 Score=71.34 Aligned_cols=142 Identities=16% Similarity=0.317 Sum_probs=96.2
Q ss_pred CcEEEEEE-CCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEec-----CCCEEEEEecCCcEEEEECCCCc--eeEE-Ee
Q 007234 86 SSLLVLGT-GGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-----HGSCIYSAGADGMVCEIDPLTGS--LLGK-FR 156 (612)
Q Consensus 86 ~~~l~~gs-~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp-----~~~~l~s~s~dg~v~iwd~~~~~--~~~~-~~ 156 (612)
..+|+.-. ....|+-.|+++|+.+.........+|..++-.. +...-+.|-.++.+..||.+-.. ++.. .+
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k 572 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK 572 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccc
Confidence 34444443 3466999999999999777543334466654321 12235667788899999988532 2221 11
Q ss_pred --cCCCCeeEEEECCCCCEEEEeC-CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEc
Q 007234 157 --ASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRT 229 (612)
Q Consensus 157 --~~~~~v~~l~~spdg~~l~~~~-g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~ 229 (612)
.....++|++-+.+|.+++... |.|++||--..+....+++-..||.+|..+.||+++++++ +..+.+++.
T Consensus 573 ~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc--~tyLlLi~t 646 (794)
T PF08553_consen 573 QYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC--KTYLLLIDT 646 (794)
T ss_pred ccccCCCceEEEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee--cceEEEEEE
Confidence 1344788999998885544444 9999999433333445677789999999999999999886 678888886
No 345
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.74 E-value=0.0011 Score=68.98 Aligned_cols=179 Identities=18% Similarity=0.227 Sum_probs=110.4
Q ss_pred eEEEEcCCCCEEEEEeC---C-CcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccccc
Q 007234 9 ILTSFSPALDYFAICSG---D-ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (612)
Q Consensus 9 l~~~fspdg~~las~s~---d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (612)
+.-+|+|++..++..+. . ..+.++|+.+++...... ..+......|+++ .
T Consensus 196 ~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspD------------------G------- 249 (425)
T COG0823 196 LTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPD------------------G------- 249 (425)
T ss_pred eccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCC------------------C-------
Confidence 44589999998775532 2 358899999887654443 1222222333333 1
Q ss_pred CCcEEEEEECCCc--EEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEec-CC--cEEEEECCCCceeEEEecCC
Q 007234 85 GSSLLVLGTGGGD--VLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA-DG--MVCEIDPLTGSLLGKFRAST 159 (612)
Q Consensus 85 ~~~~l~~gs~~g~--I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~-dg--~v~iwd~~~~~~~~~~~~~~ 159 (612)
..++++...+|. |+++|+.++... ++.. -.+.-+.-.|+|||+.++-.+. .| .|.+.|...+.. ..+....
T Consensus 250 -~~l~f~~~rdg~~~iy~~dl~~~~~~-~Lt~-~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~ 325 (425)
T COG0823 250 -SKLAFSSSRDGSPDIYLMDLDGKNLP-RLTN-GFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSG 325 (425)
T ss_pred -CEEEEEECCCCCccEEEEcCCCCcce-eccc-CCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccC
Confidence 344555666776 788888887744 3422 2223346789999999776653 44 466677765554 3333333
Q ss_pred CCeeEEEECCCCCEEEEeC---Ce--EEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEE
Q 007234 160 KGISCMAVSSDGKMLATAA---GQ--LKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSA 218 (612)
Q Consensus 160 ~~v~~l~~spdg~~l~~~~---g~--i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s 218 (612)
..-..-.|+|||++++..+ |. |.+.|+.++...+.+. +........|.|+|+.+...+
T Consensus 326 ~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~s 388 (425)
T COG0823 326 GGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIMFSS 388 (425)
T ss_pred CCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEEec
Confidence 3333788999999999776 44 6777776665444443 333344567888888777654
No 346
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.74 E-value=0.00066 Score=70.27 Aligned_cols=79 Identities=22% Similarity=0.371 Sum_probs=61.7
Q ss_pred cccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccc
Q 007234 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (612)
Q Consensus 4 ~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (612)
+.| +||+++|+.+.|+.|+.||+|.+||...+..... + .....+.++|.|.
T Consensus 260 s~v--~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-k-------------------a~~~P~~iaWHp~------- 310 (545)
T PF11768_consen 260 SQV--ICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-K-------------------AEFIPTLIAWHPD------- 310 (545)
T ss_pred Ccc--eEEecCcccceEEEEecCCeEEEEEcCCCeeeee-e-------------------ecccceEEEEcCC-------
Confidence 455 6889999999999999999999999877643321 1 1234567888877
Q ss_pred cCCcEEEEEECCCcEEEEEcCCCeEEEEec
Q 007234 84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLS 113 (612)
Q Consensus 84 ~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~ 113 (612)
+.++++|+..|.+.+||+.-+....++.
T Consensus 311 --gai~~V~s~qGelQ~FD~ALspi~~qLl 338 (545)
T PF11768_consen 311 --GAIFVVGSEQGELQCFDMALSPIKMQLL 338 (545)
T ss_pred --CcEEEEEcCCceEEEEEeecCccceeec
Confidence 7899999999999999998766544443
No 347
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.72 E-value=8.5e-06 Score=83.87 Aligned_cols=197 Identities=12% Similarity=0.145 Sum_probs=126.1
Q ss_pred ceeEEEeeecccccccccCCcEEEEEECCCcEEEEEcCCCeEE-EEeccCCCCCeEEEEEec-CCCEEEEEe----cCCc
Q 007234 67 DYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLK-WRLSDCHPGGVSAISFAT-HGSCIYSAG----ADGM 140 (612)
Q Consensus 67 ~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~-~~~~~~h~~~V~~l~~sp-~~~~l~s~s----~dg~ 140 (612)
...|++|+-... ..++++|..+|.|-+-.++...-. +.+..+|..++++++|++ |.+.|+.|- .|..
T Consensus 58 y~kcva~~y~~d-------~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~ 130 (783)
T KOG1008|consen 58 YVKCVASFYGND-------RCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSS 130 (783)
T ss_pred CceeehhhcCCc-------hhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCC
Confidence 455677765542 367899999999999888764433 456678899999999998 555666652 4568
Q ss_pred EEEEECCCC--ceeEE--Eec-CCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCe-eEEEEecCCCCEEEEEEee-CC
Q 007234 141 VCEIDPLTG--SLLGK--FRA-STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHK-KMQKFSGHPGAVRFMTFSD-NG 211 (612)
Q Consensus 141 v~iwd~~~~--~~~~~--~~~-~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~-~~~~~~~h~~~v~~l~~sp-~~ 211 (612)
+.+||+.++ .+... |.+ ......+++|-.+.+++.+|. ..+.++|++... ....+ .+..+..+...| .+
T Consensus 131 ~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~ 208 (783)
T KOG1008|consen 131 LKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSP 208 (783)
T ss_pred ccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCC
Confidence 999999876 33222 222 234667899998999999887 689999987432 22222 234567778888 67
Q ss_pred cEEEEEEcCCCeEEEEEc-CCCccccceeeEeecCCce----eEEeEEecCCccCCCCcEEEEEe-cCCcEEEEECC
Q 007234 212 KYVLSSAVGERYIALWRT-DGVKKQSASCVLAMEHPAV----FMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQ 282 (612)
Q Consensus 212 ~~l~s~s~~d~~i~vwd~-~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~t~s-~dg~i~iwd~~ 282 (612)
.|+++. .|+.|-+||. .+-+.. +....+... -+..+++.+. ..| .+++.+ ..++|+.||+.
T Consensus 209 nY~cs~--~dg~iAiwD~~rnienp----l~~i~~~~N~~~~~l~~~aycPt---rtg-lla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 209 NYFCSN--SDGDIAIWDTYRNIENP----LQIILRNENKKPKQLFALAYCPT---RTG-LLAVLSRDSITIRLYDIC 275 (783)
T ss_pred Cceecc--ccCceeeccchhhhccH----HHHHhhCCCCcccceeeEEeccC---Ccc-hhhhhccCcceEEEeccc
Confidence 777764 4899999993 332211 111112211 1233344421 233 445554 46799999864
No 348
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.69 E-value=0.016 Score=60.04 Aligned_cols=193 Identities=12% Similarity=0.139 Sum_probs=132.4
Q ss_pred EEEEcCCCCE-EEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcE
Q 007234 10 LTSFSPALDY-FAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (612)
Q Consensus 10 ~~~fspdg~~-las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (612)
.+++++++.. ++....++.|.+.|..+.++........ . ...+.+.+. +..
T Consensus 78 ~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~------------------P~~~~~~~~---------~~~ 129 (381)
T COG3391 78 GVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-G------------------PVGLAVDPD---------GKY 129 (381)
T ss_pred ceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-C------------------CceEEECCC---------CCE
Confidence 3488888874 4455556899999988877776653211 1 222333332 445
Q ss_pred EEEEEC---CCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEe-cCCcEEEEECCCCceeE-E----EecCC
Q 007234 89 LVLGTG---GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPLTGSLLG-K----FRAST 159 (612)
Q Consensus 89 l~~gs~---~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s-~dg~v~iwd~~~~~~~~-~----~~~~~ 159 (612)
+.++.. ++.+.+.|..++........+. .+ ..+++.|+|+.++.+. .++.|.+.|.......+ . .. ..
T Consensus 130 vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~-~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~-~~ 206 (381)
T COG3391 130 VYVANAGNGNNTVSVIDAATNKVTATIPVGN-TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVG-VG 206 (381)
T ss_pred EEEEecccCCceEEEEeCCCCeEEEEEecCC-Cc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccc-cC
Confidence 555554 5779999999999887754433 34 8999999999777665 78899999976665543 1 11 22
Q ss_pred CCeeEEEECCCCCEEEEeC-----CeEEEEEcCCCeeEEE-EecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCc
Q 007234 160 KGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKKMQK-FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (612)
Q Consensus 160 ~~v~~l~~spdg~~l~~~~-----g~i~lwd~~~~~~~~~-~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~ 233 (612)
.....+.++|+|..+.+.. +.+...|..++..... ...-......+.++|+|+++.+.-...+.+.+.|..+..
T Consensus 207 ~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~ 286 (381)
T COG3391 207 TGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDR 286 (381)
T ss_pred CCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCc
Confidence 3457789999999777665 3788899888877655 222121456688999999888875556788888877765
No 349
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.68 E-value=0.0013 Score=70.19 Aligned_cols=181 Identities=15% Similarity=0.202 Sum_probs=112.0
Q ss_pred EEEcCCCCEEEEEeC----CCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCC
Q 007234 11 TSFSPALDYFAICSG----DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGS 86 (612)
Q Consensus 11 ~~fspdg~~las~s~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 86 (612)
.+|+|...+||.++. .|.|.||- ++|+...... -....++++|.|. .
T Consensus 21 ~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-------------------~P~hatSLCWHpe---------~ 71 (1416)
T KOG3617|consen 21 SSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-------------------YPVHATSLCWHPE---------E 71 (1416)
T ss_pred cccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-------------------cceehhhhccChH---------H
Confidence 489999999998864 57788873 3455332211 1223556888875 4
Q ss_pred cEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEE--EecCC--C--
Q 007234 87 SLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK--FRAST--K-- 160 (612)
Q Consensus 87 ~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~--~~~~~--~-- 160 (612)
-.++.|-.-|.+.+|...+.+.. +....|..+|..+.||++|..++++..-|.|.+|....-..++. +-.|. .
T Consensus 72 ~vLa~gwe~g~~~v~~~~~~e~h-tv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~l 150 (1416)
T KOG3617|consen 72 FVLAQGWEMGVSDVQKTNTTETH-TVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQL 150 (1416)
T ss_pred HHHhhccccceeEEEecCCceee-eeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhcee
Confidence 45777888899999998877665 44467999999999999999999999999999997653222221 11121 1
Q ss_pred CeeEEEECCCCCE-------EEEeC-CeEE-EEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcC
Q 007234 161 GISCMAVSSDGKM-------LATAA-GQLK-TFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD 230 (612)
Q Consensus 161 ~v~~l~~spdg~~-------l~~~~-g~i~-lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~ 230 (612)
...|...++++.- -++|+ ..+- .++.+....-+... |. -.|+|..++.++ .+|+|+--|-.
T Consensus 151 tl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~-ks-------gv~~g~~F~~~~-~~GtVyyvdq~ 220 (1416)
T KOG3617|consen 151 TLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDE-KS-------GVPKGTEFLFAG-KSGTVYYVDQN 220 (1416)
T ss_pred eEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhcccc-cc-------CCCCCcEEEEEc-CCceEEEEcCC
Confidence 2345556676432 22333 2221 22222111111111 11 147788788777 79988766643
No 350
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=0.0002 Score=70.13 Aligned_cols=150 Identities=11% Similarity=0.138 Sum_probs=97.4
Q ss_pred EEEEEcCCCeEEEEeccCCCCCeEEEEEecCCC-EEEEEecCCcEEEEECCCCceeEEEecCCCCeeEEEECCCCCEEE-
Q 007234 98 VLALAVSAGQLKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLA- 175 (612)
Q Consensus 98 I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~-~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~- 175 (612)
|++.+..+-+... +..+|...|.+++|+|..+ ++..++.+.+|++.|+++.-.+..+..+ ..+++++|.-|....+
T Consensus 175 v~~l~~~~fkssq-~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IY 252 (463)
T KOG1645|consen 175 VQKLESHDFKSSQ-ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIY 252 (463)
T ss_pred eEEeccCCcchhh-cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeE
Confidence 5555554444432 5577889999999999766 6888999999999999999998888876 7899999998766555
Q ss_pred EeC--CeEEEEEcCCCee-EEEEec--CCCCEEEEEE------eeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeec
Q 007234 176 TAA--GQLKTFNCSDHKK-MQKFSG--HPGAVRFMTF------SDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME 244 (612)
Q Consensus 176 ~~~--g~i~lwd~~~~~~-~~~~~~--h~~~v~~l~~------sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~ 244 (612)
+|. |.|.+||++..+- +..+.+ ...+|..++. .+.|.+++.+. .+ ...|.+...... ..++..++
T Consensus 253 aGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~l-t~--l~f~ei~~s~~~-~p~vlele 328 (463)
T KOG1645|consen 253 AGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFAL-TV--LQFYEIVFSAEC-LPCVLELE 328 (463)
T ss_pred EeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeee-hh--hhhhhhhccccC-CCcccccC
Confidence 554 9999999986532 223322 2234444433 23344444332 23 567776543322 23455555
Q ss_pred CCceeEEeE
Q 007234 245 HPAVFMDCR 253 (612)
Q Consensus 245 ~~~~~~~~~ 253 (612)
.++..++..
T Consensus 329 ~pG~cismq 337 (463)
T KOG1645|consen 329 PPGICISMQ 337 (463)
T ss_pred CCcceeeee
Confidence 555555443
No 351
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.65 E-value=0.025 Score=54.14 Aligned_cols=190 Identities=11% Similarity=0.136 Sum_probs=99.7
Q ss_pred ccceeEEEEcCCCC-EEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccc
Q 007234 5 NIRDILTSFSPALD-YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (612)
Q Consensus 5 ~V~~l~~~fspdg~-~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (612)
.+..| +|+|+.+ ++|+....+.|...+. +|+.+..+.-.. ..+...+.+..
T Consensus 23 e~SGL--Ty~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g-----------------~~D~EgI~y~g-------- 74 (248)
T PF06977_consen 23 ELSGL--TYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDG-----------------FGDYEGITYLG-------- 74 (248)
T ss_dssp -EEEE--EEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS------------------SSEEEEEE-S--------
T ss_pred Ccccc--EEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCC-----------------CCCceeEEEEC--------
Confidence 35556 9999866 5555566788888886 588888775221 12344444432
Q ss_pred cCCcEEEEEE-CCCcEEEEEcCCCe------EEEEe----ccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCC---C
Q 007234 84 LGSSLLVLGT-GGGDVLALAVSAGQ------LKWRL----SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT---G 149 (612)
Q Consensus 84 ~~~~~l~~gs-~~g~I~vwd~~~~~------~~~~~----~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~---~ 149 (612)
+..+++.. .++.+.++++.... ...++ ...+...+-+++|.|.++.|+.+-...-..++.+.. .
T Consensus 75 --~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~ 152 (248)
T PF06977_consen 75 --NGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGG 152 (248)
T ss_dssp --TTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-S
T ss_pred --CCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCc
Confidence 33444444 57889888883321 11111 123556799999999888888887666656665543 2
Q ss_pred ceeEEE-----e---cCCCCeeEEEECCCCCE-EEEeC--CeEEEEEcCCCeeEEEEecCC---------CCEEEEEEee
Q 007234 150 SLLGKF-----R---ASTKGISCMAVSSDGKM-LATAA--GQLKTFNCSDHKKMQKFSGHP---------GAVRFMTFSD 209 (612)
Q Consensus 150 ~~~~~~-----~---~~~~~v~~l~~spdg~~-l~~~~--g~i~lwd~~~~~~~~~~~~h~---------~~v~~l~~sp 209 (612)
..+... . .....+.+++++|.... ++.++ ..|..+| .+|+.+..+.-.. ...-.|+|.+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~ 231 (248)
T PF06977_consen 153 FDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDP 231 (248)
T ss_dssp S--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-T
T ss_pred cceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECC
Confidence 111111 1 12346789999996544 44444 6888999 6777665553222 2467899999
Q ss_pred CCcEEEEEEcCCCeEEEE
Q 007234 210 NGKYVLSSAVGERYIALW 227 (612)
Q Consensus 210 ~~~~l~s~s~~d~~i~vw 227 (612)
+|+..++ + +-+..++|
T Consensus 232 ~G~LYIv-s-EpNlfy~f 247 (248)
T PF06977_consen 232 DGNLYIV-S-EPNLFYRF 247 (248)
T ss_dssp T--EEEE-E-TTTEEEEE
T ss_pred CCCEEEE-c-CCceEEEe
Confidence 9975554 4 45554443
No 352
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.64 E-value=0.013 Score=60.43 Aligned_cols=215 Identities=15% Similarity=0.204 Sum_probs=112.5
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCcEEE--Eeecc-------------CCcccccc--cccccccccc--------
Q 007234 10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQT--EFADI-------------ASTETTSL--YGNRLEREHL-------- 64 (612)
Q Consensus 10 ~~~fspdg~~las~s~dg~i~iwd~~~~~~~~--~~~~~-------------~~~~~~~~--~s~~~~~~~~-------- 64 (612)
.+.|+++..-||.|...|.|.||.+...+... ..... .+....+. ..+.+..|..
T Consensus 6 ~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~~~~ 85 (395)
T PF08596_consen 6 HVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLLDAK 85 (395)
T ss_dssp EEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE---
T ss_pred EEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhheecc
Confidence 45999998899999999999999876543322 00000 11111111 0111111100
Q ss_pred ccceeEEEeeecccccccccCCcEEEEEECCCcEEEEEcCCCeEEEEec-c------CCCCCeEEEEEec-----CC---
Q 007234 65 SVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLS-D------CHPGGVSAISFAT-----HG--- 129 (612)
Q Consensus 65 ~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~-~------~h~~~V~~l~~sp-----~~--- 129 (612)
....++++-. +-.++++|..+|.+.|.|++....+..-. . .....|+++.|.- |+
T Consensus 86 ~g~vtal~~S----------~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySS 155 (395)
T PF08596_consen 86 QGPVTALKNS----------DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSS 155 (395)
T ss_dssp S-SEEEEEE-----------BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEE
T ss_pred CCcEeEEecC----------CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccc
Confidence 1223333321 15689999999999999998887765521 1 2345688898862 22
Q ss_pred CEEEEEecCCcEEEEECC--C-Cce----eEEEecCCCCeeEEE-ECCC---------------------CCEEEEeC-C
Q 007234 130 SCIYSAGADGMVCEIDPL--T-GSL----LGKFRASTKGISCMA-VSSD---------------------GKMLATAA-G 179 (612)
Q Consensus 130 ~~l~s~s~dg~v~iwd~~--~-~~~----~~~~~~~~~~v~~l~-~spd---------------------g~~l~~~~-g 179 (612)
-.+++|...|.+.+|.+. . +.. ......+.+++..|. ++.+ ..++++++ .
T Consensus 156 i~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~ 235 (395)
T PF08596_consen 156 ICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSES 235 (395)
T ss_dssp EEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SS
T ss_pred eEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEccc
Confidence 358899999999999764 1 211 111223445555554 3221 12455555 8
Q ss_pred eEEEEEcCCCeeEEEEecCCCCEEEEEEe-----eCCcEEEEEEcCCCeEEEEEcCCCccc
Q 007234 180 QLKTFNCSDHKKMQKFSGHPGAVRFMTFS-----DNGKYVLSSAVGERYIALWRTDGVKKQ 235 (612)
Q Consensus 180 ~i~lwd~~~~~~~~~~~~h~~~v~~l~~s-----p~~~~l~s~s~~d~~i~vwd~~~~~~~ 235 (612)
.++++..-+.+...+.....-....+.+. ..+..|++-. .+|.|+++.+..-+..
T Consensus 236 ~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~-~~G~i~i~SLP~Lkei 295 (395)
T PF08596_consen 236 DIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLF-NNGSIRIYSLPSLKEI 295 (395)
T ss_dssp EEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEE-TTSEEEEEETTT--EE
T ss_pred ceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEE-CCCcEEEEECCCchHh
Confidence 99999998887765554332333445553 2455666665 7999999999887655
No 353
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.63 E-value=0.00029 Score=74.98 Aligned_cols=107 Identities=16% Similarity=0.213 Sum_probs=84.3
Q ss_pred EEEEEecCCCEEEEEe----cCCcEEEEECCCCceeEEEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEE
Q 007234 121 SAISFATHGSCIYSAG----ADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQK 194 (612)
Q Consensus 121 ~~l~~sp~~~~l~s~s----~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~ 194 (612)
+-.+|+|...+|++++ ..|.|.||- .+|++-+... ..-.+++++|+|..-.|+.|= |.+.+|...+.+.-..
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv 96 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTV 96 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCceeeee
Confidence 4457999999988886 457888885 5666544332 123457899999887777775 8999999888777666
Q ss_pred EecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcC
Q 007234 195 FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD 230 (612)
Q Consensus 195 ~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~ 230 (612)
...|+.+|..+.||++|..++++. .-|.+.+|...
T Consensus 97 ~~th~a~i~~l~wS~~G~~l~t~d-~~g~v~lwr~d 131 (1416)
T KOG3617|consen 97 VETHPAPIQGLDWSHDGTVLMTLD-NPGSVHLWRYD 131 (1416)
T ss_pred ccCCCCCceeEEecCCCCeEEEcC-CCceeEEEEee
Confidence 678999999999999999999875 78999999876
No 354
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.62 E-value=0.0029 Score=70.62 Aligned_cols=189 Identities=12% Similarity=0.202 Sum_probs=119.0
Q ss_pred CcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEEC----CCC------------
Q 007234 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDP----LTG------------ 149 (612)
Q Consensus 86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~----~~~------------ 149 (612)
...+++++..|.|.+-|+++.... +...-...|.+++|+||++.++..+.++++.+-+- -.-
T Consensus 80 ~~~i~v~~~~G~iilvd~et~~~e--ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk 157 (1265)
T KOG1920|consen 80 TNSICVITALGDIILVDPETLELE--IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSK 157 (1265)
T ss_pred cceEEEEecCCcEEEEccccccee--eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccc
Confidence 667999999999999999887653 22335678999999999999998888888766432 111
Q ss_pred -------ceeEEEecCC---------------------CCeeEEEECCCCCEEEEeC-------CeEEEEEcCCCeeEEE
Q 007234 150 -------SLLGKFRAST---------------------KGISCMAVSSDGKMLATAA-------GQLKTFNCSDHKKMQK 194 (612)
Q Consensus 150 -------~~~~~~~~~~---------------------~~v~~l~~spdg~~l~~~~-------g~i~lwd~~~~~~~~~ 194 (612)
+....|++.. +.=++|.|.-||+++|+.. ..|++||-+ |..-..
T Consensus 158 ~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~ 236 (1265)
T KOG1920|consen 158 FVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNST 236 (1265)
T ss_pred cceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcc
Confidence 1111122111 1124589999999999843 489999976 443222
Q ss_pred EecCCCCEEEEEEeeCCcEEEEEEc--CCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEE--
Q 007234 195 FSGHPGAVRFMTFSDNGKYVLSSAV--GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAI-- 270 (612)
Q Consensus 195 ~~~h~~~v~~l~~sp~~~~l~s~s~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~-- 270 (612)
-....+.-.+++|-|.|..+++... .|+.|.+|.-+.-.... .....+.....+..++|+ .++..|++.
T Consensus 237 se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~--f~l~~p~de~~ve~L~Wn-----s~sdiLAv~~~ 309 (1265)
T KOG1920|consen 237 SEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGE--FVLPFPLDEKEVEELAWN-----SNSDILAVVTS 309 (1265)
T ss_pred cCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccc--cccCCcccccchheeeec-----CCCCceeeeec
Confidence 2223334467899999998887531 24568888765543221 111222222224556676 778888773
Q ss_pred -ecCCcEEEEECCCc
Q 007234 271 -SETGVCYIWYGQNI 284 (612)
Q Consensus 271 -s~dg~i~iwd~~~~ 284 (612)
.....|++|-..+.
T Consensus 310 ~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 310 NLENSLVQLWTTGNY 324 (1265)
T ss_pred ccccceEEEEEecCe
Confidence 33345999975443
No 355
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.61 E-value=0.053 Score=53.45 Aligned_cols=232 Identities=12% Similarity=0.088 Sum_probs=123.1
Q ss_pred cCCCCEEEEEeCCCcEEEEECC-CCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEE
Q 007234 14 SPALDYFAICSGDARIKIWDTL-KGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLG 92 (612)
Q Consensus 14 spdg~~las~s~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~g 92 (612)
...++.|+.|..+| |.+++.. ........+. ..++.+.-.+.- +.+++.
T Consensus 4 ~~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~--------------------~~I~ql~vl~~~--------~~llvL- 53 (275)
T PF00780_consen 4 DSWGDRLLVGTEDG-LYVYDLSDPSKPTRILKL--------------------SSITQLSVLPEL--------NLLLVL- 53 (275)
T ss_pred ccCCCEEEEEECCC-EEEEEecCCccceeEeec--------------------ceEEEEEEeccc--------CEEEEE-
Confidence 34678899999999 8899983 2222222210 012222222221 223333
Q ss_pred ECCCcEEEEEcCCCeEEEEe-------------ccCCCCCeEEEE--EecCCCEEEEEecCCcEEEEECCCC-----cee
Q 007234 93 TGGGDVLALAVSAGQLKWRL-------------SDCHPGGVSAIS--FATHGSCIYSAGADGMVCEIDPLTG-----SLL 152 (612)
Q Consensus 93 s~~g~I~vwd~~~~~~~~~~-------------~~~h~~~V~~l~--~sp~~~~l~s~s~dg~v~iwd~~~~-----~~~ 152 (612)
.|+.+.++++..-...... .......+..++ -...+...+.+....+|.+|..... +..
T Consensus 54 -sd~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ 132 (275)
T PF00780_consen 54 -SDGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLL 132 (275)
T ss_pred -cCCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCccccccee
Confidence 4599999998754432210 111233455554 1223444444445568888876543 455
Q ss_pred EEEecCCCCeeEEEECCCCCEEEEeC-CeEEEEEcCCCeeEEEEecC------------CCCEEEEEEeeCCcEEEEEEc
Q 007234 153 GKFRASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGH------------PGAVRFMTFSDNGKYVLSSAV 219 (612)
Q Consensus 153 ~~~~~~~~~v~~l~~spdg~~l~~~~-g~i~lwd~~~~~~~~~~~~h------------~~~v~~l~~sp~~~~l~s~s~ 219 (612)
+.+.. ...+.+++|. ++.++.|. +...+.|+.++....-+... ..++..+.. +++.+|++-
T Consensus 133 ke~~l-p~~~~~i~~~--~~~i~v~~~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~-- 206 (275)
T PF00780_consen 133 KEISL-PDPPSSIAFL--GNKICVGTSKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY-- 206 (275)
T ss_pred EEEEc-CCCcEEEEEe--CCEEEEEeCCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--
Confidence 55554 4678999998 55677775 88999999977654333211 123333333 445555532
Q ss_pred CCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeE
Q 007234 220 GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKIL 296 (612)
Q Consensus 220 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~ 296 (612)
|..-...|... +... ........ ......... .+|++.+.+ .|.||++.+++.++.+......
T Consensus 207 -~~~g~fv~~~G-~~~r-~~~i~W~~--~p~~~~~~~--------pyli~~~~~-~iEV~~~~~~~lvQ~i~~~~~~ 269 (275)
T PF00780_consen 207 -DNIGVFVNKNG-EPSR-KSTIQWSS--APQSVAYSS--------PYLIAFSSN-SIEVRSLETGELVQTIPLPNIR 269 (275)
T ss_pred -cceEEEEcCCC-CcCc-ccEEEcCC--chhEEEEEC--------CEEEEECCC-EEEEEECcCCcEEEEEECCCEE
Confidence 44334444433 2221 11222222 222223222 467766664 5999999999888766654443
No 356
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.55 E-value=0.0065 Score=55.64 Aligned_cols=205 Identities=12% Similarity=0.116 Sum_probs=123.3
Q ss_pred CcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCC---CEEEEEecCCcEEEEECC--CCceeEEEec---
Q 007234 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHG---SCIYSAGADGMVCEIDPL--TGSLLGKFRA--- 157 (612)
Q Consensus 86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~---~~l~s~s~dg~v~iwd~~--~~~~~~~~~~--- 157 (612)
+.++.+--..|.|.-||..+++....-.++. ++.++.+--.+ .+.+.++..-.|--||.. .....+++..
T Consensus 27 ~sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p--~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~ 104 (310)
T KOG4499|consen 27 QSLLYVDIEAGEVHRYDIEQNKVYRAKIEGP--PSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQP 104 (310)
T ss_pred ceEEEEEeccCceehhhhhhhheEEEEEecC--cceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCc
Confidence 6777888888999889999988765544332 24455443333 234444444456667743 2233333211
Q ss_pred --CCCCeeEEEECCCCCEEEEeC-----------CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeE
Q 007234 158 --STKGISCMAVSSDGKMLATAA-----------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYI 224 (612)
Q Consensus 158 --~~~~v~~l~~spdg~~l~~~~-----------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i 224 (612)
.+...+.-..+|+|++.+-.- |.++.|-.. ..+..+.+.-+--+.++|+.+.+.+....+.+-.|
T Consensus 105 d~kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V 182 (310)
T KOG4499|consen 105 DRKKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG--HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEV 182 (310)
T ss_pred hHHhcccccCccCCCCceeeeeeccccccccccccEEEEeccC--CCceeeehhccCCccccccccCcEEEEEccCceEE
Confidence 123566778899999954221 344444321 12222222333345688998888777776667788
Q ss_pred EEEE--cCCCccccceeeEeecC----CceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEee
Q 007234 225 ALWR--TDGVKKQSASCVLAMEH----PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSS 298 (612)
Q Consensus 225 ~vwd--~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~ 298 (612)
.-|| ..++.......++.+.. ........+.. .+|.+.++.-..|+|.-+|..+|+.+.+++-...+++
T Consensus 183 ~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID-----~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qit 257 (310)
T KOG4499|consen 183 DAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTID-----TEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQIT 257 (310)
T ss_pred eeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEc-----cCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceE
Confidence 7788 66665544444454443 22333344443 6788888888888999999999999988775554444
Q ss_pred c
Q 007234 299 S 299 (612)
Q Consensus 299 ~ 299 (612)
+
T Consensus 258 s 258 (310)
T KOG4499|consen 258 S 258 (310)
T ss_pred E
Confidence 3
No 357
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.53 E-value=0.079 Score=57.25 Aligned_cols=199 Identities=11% Similarity=0.148 Sum_probs=116.6
Q ss_pred CCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEECCC
Q 007234 17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGG 96 (612)
Q Consensus 17 g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g 96 (612)
+..+..++.++.|.-.|..+|+.+.++............... ..... ...+ +..+++++.+|
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~----~~~rg--~av~------------~~~v~v~t~dg 130 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCD----VVNRG--VALY------------DGKVFFGTLDA 130 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccc----ccccc--ceEE------------CCEEEEEcCCC
Confidence 446667777889999999999999887532110000000000 00000 0000 45688899999
Q ss_pred cEEEEEcCCCeEEEEeccCCCC---CeEEEEEecCCCEEEEEe------cCCcEEEEECCCCceeEEEecCCC-------
Q 007234 97 DVLALAVSAGQLKWRLSDCHPG---GVSAISFATHGSCIYSAG------ADGMVCEIDPLTGSLLGKFRASTK------- 160 (612)
Q Consensus 97 ~I~vwd~~~~~~~~~~~~~h~~---~V~~l~~sp~~~~l~s~s------~dg~v~iwd~~~~~~~~~~~~~~~------- 160 (612)
.+.-+|..+|+.+++....... .+++--.--++ .++.++ .+|.|..+|.++|+.+-.+..-..
T Consensus 131 ~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~ 209 (527)
T TIGR03075 131 RLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDK 209 (527)
T ss_pred EEEEEECCCCCEEeecccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccc
Confidence 9999999999999876432111 12211111134 455543 268999999999987766433111
Q ss_pred ------------------------Ce-eEEEECCCCCEEEEeC-------C-----------eEEEEEcCCCeeEEEEec
Q 007234 161 ------------------------GI-SCMAVSSDGKMLATAA-------G-----------QLKTFNCSDHKKMQKFSG 197 (612)
Q Consensus 161 ------------------------~v-~~l~~spdg~~l~~~~-------g-----------~i~lwd~~~~~~~~~~~~ 197 (612)
.+ ..+++.|...+++.+. + +|.-.|++||+..-.++.
T Consensus 210 ~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~ 289 (527)
T TIGR03075 210 ADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQT 289 (527)
T ss_pred cccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeC
Confidence 11 1346666666666543 1 577778899988776654
Q ss_pred CCCCEEE---------EEEeeCCc---EEEEEEcCCCeEEEEEcCCCccc
Q 007234 198 HPGAVRF---------MTFSDNGK---YVLSSAVGERYIALWRTDGVKKQ 235 (612)
Q Consensus 198 h~~~v~~---------l~~sp~~~---~l~s~s~~d~~i~vwd~~~~~~~ 235 (612)
....+.. +.+..+|+ .++.+ ..+|.+.+.|-.+++.+
T Consensus 290 ~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~-~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 290 TPHDEWDYDGVNEMILFDLKKDGKPRKLLAHA-DRNGFFYVLDRTNGKLL 338 (527)
T ss_pred CCCCCccccCCCCcEEEEeccCCcEEEEEEEe-CCCceEEEEECCCCcee
Confidence 3222211 22224665 44454 48999999999988753
No 358
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.49 E-value=0.0015 Score=68.63 Aligned_cols=143 Identities=14% Similarity=0.178 Sum_probs=98.9
Q ss_pred CcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeE---E--E-ecCC
Q 007234 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLG---K--F-RAST 159 (612)
Q Consensus 86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~---~--~-~~~~ 159 (612)
++++++|+..|.+++|+-..++....-..+..+.+..+..+++..+++.|+..|.|.++-+..+.+.. . . +.|.
T Consensus 45 ~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~ 124 (726)
T KOG3621|consen 45 EEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHK 124 (726)
T ss_pred CceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccCC
Confidence 78999999999999999888876544434455667778889988889999999999999876543211 1 1 1256
Q ss_pred CCeeEEEECCCCCEEEEeC--CeEEEEEcCCC----eeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCC
Q 007234 160 KGISCMAVSSDGKMLATAA--GQLKTFNCSDH----KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (612)
Q Consensus 160 ~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~----~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~ 232 (612)
..|++++|++++..+++|+ |+|..-.+.+. .....+..-.+.|-.+.... +..|++.. -+ ..+++.+.+
T Consensus 125 ~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q-~~LLVStl--~r-~~Lc~tE~e 199 (726)
T KOG3621|consen 125 CRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ-SYLLVSTL--TR-CILCQTEAE 199 (726)
T ss_pred ceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeeccc-ceehHhhh--hh-hheeecchh
Confidence 7999999999999999999 88888777662 11233333456676666543 33444432 22 345555443
No 359
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.47 E-value=0.13 Score=51.99 Aligned_cols=234 Identities=11% Similarity=0.100 Sum_probs=108.1
Q ss_pred EEcCCCCEEEEEeC-CC--cEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcE
Q 007234 12 SFSPALDYFAICSG-DA--RIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (612)
Q Consensus 12 ~fspdg~~las~s~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (612)
+|.+||+.|+.++. || .+.+.|+.+++..+--.+..........+++ ++.
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~---------------------------~~~ 94 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPD---------------------------DRA 94 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TT---------------------------SSE
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecC---------------------------CCe
Confidence 68899987776665 54 5667799999877644432221111222221 344
Q ss_pred EEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEe--cCCCEEEEEe----------------------cCCcEEEE
Q 007234 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFA--THGSCIYSAG----------------------ADGMVCEI 144 (612)
Q Consensus 89 l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~s--p~~~~l~s~s----------------------~dg~v~iw 144 (612)
++-...+..|.-.|+.+.+....+ .....-+-...|. .++..++..- ..+.|...
T Consensus 95 ~~Yv~~~~~l~~vdL~T~e~~~vy-~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~i 173 (386)
T PF14583_consen 95 LYYVKNGRSLRRVDLDTLEERVVY-EVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTI 173 (386)
T ss_dssp EEEEETTTEEEEEETTT--EEEEE-E--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEE
T ss_pred EEEEECCCeEEEEECCcCcEEEEE-ECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEE
Confidence 444445567888888887653222 2233334334443 3455443321 12456677
Q ss_pred ECCCCceeEEEecCCCCeeEEEECCCCCE-EEEeC-C---e--EEEEEcCC-CeeEEEEecCCC--CEEEEEEeeCCcEE
Q 007234 145 DPLTGSLLGKFRASTKGISCMAVSSDGKM-LATAA-G---Q--LKTFNCSD-HKKMQKFSGHPG--AVRFMTFSDNGKYV 214 (612)
Q Consensus 145 d~~~~~~~~~~~~~~~~v~~l~~spdg~~-l~~~~-g---~--i~lwd~~~-~~~~~~~~~h~~--~v~~l~~sp~~~~l 214 (612)
|+.+|+....+. ....+..+.|+|.... |.-+. | . -+||-+++ +...+.+..|.. .+..=-|.|||..+
T Consensus 174 dl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i 252 (386)
T PF14583_consen 174 DLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTI 252 (386)
T ss_dssp ETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-E
T ss_pred ECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEE
Confidence 888888766665 4567889999995544 44443 2 2 35665543 333343433322 23334688999877
Q ss_pred EEEEc----CCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCC----------------
Q 007234 215 LSSAV----GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG---------------- 274 (612)
Q Consensus 215 ~s~s~----~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg---------------- 274 (612)
..-+. .+..|.-+|+.+++.. ..... + .. .-... ++||++++.=+.|.
T Consensus 253 ~y~~~~~~~~~~~i~~~d~~t~~~~---~~~~~--p-~~-~H~~s-----s~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p 320 (386)
T PF14583_consen 253 WYDSYTPGGQDFWIAGYDPDTGERR---RLMEM--P-WC-SHFMS-----SPDGKLFVGDGGDAPVDVADAGGYKIENDP 320 (386)
T ss_dssp EEEEEETTT--EEEEEE-TTT--EE---EEEEE----SE-EEEEE------TTSSEEEEEE-------------------
T ss_pred EEEeecCCCCceEEEeeCCCCCCce---EEEeC--C-ce-eeeEE-----cCCCCEEEecCCCCCccccccccceecCCc
Confidence 65432 2446666777776533 12221 1 11 12222 38888776655542
Q ss_pred cEEEEECCCcce
Q 007234 275 VCYIWYGQNIEE 286 (612)
Q Consensus 275 ~i~iwd~~~~~~ 286 (612)
-|++++++.+..
T Consensus 321 ~i~~~~~~~~~~ 332 (386)
T PF14583_consen 321 WIYLFDVEAGRF 332 (386)
T ss_dssp EEEEEETTTTEE
T ss_pred EEEEeccccCce
Confidence 456677766543
No 360
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.43 E-value=0.018 Score=58.26 Aligned_cols=175 Identities=10% Similarity=0.109 Sum_probs=102.0
Q ss_pred cEEEEEcCCCeEEEEeccCCCCCeEEEEEec---C----CCEEEEEec----------CCcEEEEECCCC----ceeEEE
Q 007234 97 DVLALAVSAGQLKWRLSDCHPGGVSAISFAT---H----GSCIYSAGA----------DGMVCEIDPLTG----SLLGKF 155 (612)
Q Consensus 97 ~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp---~----~~~l~s~s~----------dg~v~iwd~~~~----~~~~~~ 155 (612)
.|++.|..+.+.+..+.-.....+++++... + ..+++.|.. .|.|.++++... ..+..+
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 4788888887766555433344555554432 2 356776642 288999999874 122221
Q ss_pred --ecCCCCeeEEEECCCCCEEEEeCCeEEEEEcCCCe-eEEEEe-cCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCC
Q 007234 156 --RASTKGISCMAVSSDGKMLATAAGQLKTFNCSDHK-KMQKFS-GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (612)
Q Consensus 156 --~~~~~~v~~l~~spdg~~l~~~~g~i~lwd~~~~~-~~~~~~-~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~ 231 (612)
....++|++++-- +|+++++.++.|++|++...+ ....-. .....+.++... +.+++.+. ..+.+.++..+.
T Consensus 83 ~~~~~~g~V~ai~~~-~~~lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD-~~~sv~~~~~~~ 158 (321)
T PF03178_consen 83 HSTEVKGPVTAICSF-NGRLVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGD-AMKSVSLLRYDE 158 (321)
T ss_dssp EEEEESS-EEEEEEE-TTEEEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEE-SSSSEEEEEEET
T ss_pred EEEeecCcceEhhhh-CCEEEEeecCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEE-cccCEEEEEEEc
Confidence 2246789999877 556666666899999998887 433222 223356666554 55788776 456677775554
Q ss_pred CccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECC
Q 007234 232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (612)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~ 282 (612)
.... . ...........+..+.+- .++..++++..+|.+.++...
T Consensus 159 ~~~~-l-~~va~d~~~~~v~~~~~l-----~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 159 ENNK-L-ILVARDYQPRWVTAAEFL-----VDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp TTE--E-EEEEEESS-BEEEEEEEE------SSSEEEEEETTSEEEEEEE-
T ss_pred cCCE-E-EEEEecCCCccEEEEEEe-----cCCcEEEEEcCCCeEEEEEEC
Confidence 2211 1 122222333333444443 445689999999999999764
No 361
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.37 E-value=0.17 Score=51.59 Aligned_cols=150 Identities=11% Similarity=0.044 Sum_probs=81.8
Q ss_pred CcEEEEE--ECCCc----EEEEEcCCCeEEEEeccCC--CCCeEEEEEecCCCEEEEEec--------------------
Q 007234 86 SSLLVLG--TGGGD----VLALAVSAGQLKWRLSDCH--PGGVSAISFATHGSCIYSAGA-------------------- 137 (612)
Q Consensus 86 ~~~l~~g--s~~g~----I~vwd~~~~~~~~~~~~~h--~~~V~~l~~sp~~~~l~s~s~-------------------- 137 (612)
+.+++++ ..+|. +.++|-++-+...+..... ..--.++.|.|..+.++|...
T Consensus 141 G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~y 220 (461)
T PF05694_consen 141 GRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKY 220 (461)
T ss_dssp --EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S
T ss_pred ccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccc
Confidence 4455543 33333 8888888777765554322 234567888898888888632
Q ss_pred CCcEEEEECCCCceeEEEecCCC--CeeEEEEC--CCCCEEEEeC---CeEEEEEc-CCCe----eEEEEecC-------
Q 007234 138 DGMVCEIDPLTGSLLGKFRASTK--GISCMAVS--SDGKMLATAA---GQLKTFNC-SDHK----KMQKFSGH------- 198 (612)
Q Consensus 138 dg~v~iwd~~~~~~~~~~~~~~~--~v~~l~~s--pdg~~l~~~~---g~i~lwd~-~~~~----~~~~~~~h------- 198 (612)
..++.+||+.+.+.++++.-... .+..|.|. |+..+-+++. ++|..|-- +.++ .+-.+...
T Consensus 221 G~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~l 300 (461)
T PF05694_consen 221 GHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWIL 300 (461)
T ss_dssp --EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS--
T ss_pred cCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccc
Confidence 36799999999999999987554 34566664 5566666655 56666644 3332 22222211
Q ss_pred ----------CCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccc
Q 007234 199 ----------PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ 235 (612)
Q Consensus 199 ----------~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~ 235 (612)
..-|+.|.+|.|.++|..++-..|.|+.||+......
T Consensus 301 p~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~P 347 (461)
T PF05694_consen 301 PEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNP 347 (461)
T ss_dssp -GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-
T ss_pred cccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCC
Confidence 3457899999999999999878999999999876543
No 362
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.31 E-value=0.12 Score=51.36 Aligned_cols=143 Identities=15% Similarity=0.176 Sum_probs=88.5
Q ss_pred CCeEEEEEecCCCEEEEEec-----------CCcEEEEECCCCceeEEEecCCCCeeEEEECCCCCEEEEeC---CeEEE
Q 007234 118 GGVSAISFATHGSCIYSAGA-----------DGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA---GQLKT 183 (612)
Q Consensus 118 ~~V~~l~~sp~~~~l~s~s~-----------dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~---g~i~l 183 (612)
..-+++...|+|.+.++... -|.|+..|. .+..++.+..+-..-+.|+||||++.|+.+. +.|+-
T Consensus 111 ~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r 189 (307)
T COG3386 111 NRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHR 189 (307)
T ss_pred CCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEE
Confidence 34578888999876554333 134555554 4555665555455668899999999998887 68888
Q ss_pred EEcCC--C----e-eEEEEecCCCCEEEEEEeeCCcEEEEEEcCCC-eEEEEEcCCCccccceeeEeecCCceeEEeEEe
Q 007234 184 FNCSD--H----K-KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER-YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCI 255 (612)
Q Consensus 184 wd~~~--~----~-~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (612)
|++.. + + ....+..+.+..-.++...+|.+.+++. ++| .|.+|+.+ +++. ....-+....++.+|
T Consensus 190 ~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~-~~g~~v~~~~pd-G~l~-----~~i~lP~~~~t~~~F 262 (307)
T COG3386 190 YDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAV-WGGGRVVRFNPD-GKLL-----GEIKLPVKRPTNPAF 262 (307)
T ss_pred EecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecc-cCCceEEEECCC-CcEE-----EEEECCCCCCccceE
Confidence 87752 2 1 1222233456667788888888765443 444 89999988 5543 233344344555666
Q ss_pred cCCccCCCCcEEEEEec
Q 007234 256 DNGGVDDAGLYVLAISE 272 (612)
Q Consensus 256 ~~~~~~~~~~~l~t~s~ 272 (612)
. .++.+.|++.+.
T Consensus 263 g----G~~~~~L~iTs~ 275 (307)
T COG3386 263 G----GPDLNTLYITSA 275 (307)
T ss_pred e----CCCcCEEEEEec
Confidence 5 255555555544
No 363
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.29 E-value=0.12 Score=49.44 Aligned_cols=175 Identities=11% Similarity=0.103 Sum_probs=113.2
Q ss_pred EEcCCCCEEEEEeCCC--cEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEE
Q 007234 12 SFSPALDYFAICSGDA--RIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (612)
Q Consensus 12 ~fspdg~~las~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (612)
.|..+|.++-+.+.-| .|+.+|+.+|+......-. ....+...+.+ ++.+.
T Consensus 51 ~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~--------------~~~FgEGit~~-------------~d~l~ 103 (264)
T PF05096_consen 51 EFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLP--------------PRYFGEGITIL-------------GDKLY 103 (264)
T ss_dssp EEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-T--------------TT--EEEEEEE-------------TTEEE
T ss_pred EecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECC--------------ccccceeEEEE-------------CCEEE
Confidence 5667787777777655 7999999999987665411 11112222211 15566
Q ss_pred EEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCC-----CCeeE
Q 007234 90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST-----KGISC 164 (612)
Q Consensus 90 ~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~-----~~v~~ 164 (612)
...=.+|...+||..+-+.+.++. ..+.=++++ .+++.|+.......++.+|..+.+..+.+.... ..++-
T Consensus 104 qLTWk~~~~f~yd~~tl~~~~~~~--y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNE 179 (264)
T PF05096_consen 104 QLTWKEGTGFVYDPNTLKKIGTFP--YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNE 179 (264)
T ss_dssp EEESSSSEEEEEETTTTEEEEEEE---SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEE
T ss_pred EEEecCCeEEEEccccceEEEEEe--cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEe
Confidence 667778889999999988887774 334556776 467788888778889999999888777765432 24566
Q ss_pred EEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEec------------C---CCCEEEEEEeeCCcEEEEEE
Q 007234 165 MAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSG------------H---PGAVRFMTFSDNGKYVLSSA 218 (612)
Q Consensus 165 l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~------------h---~~~v~~l~~sp~~~~l~s~s 218 (612)
+.|. +|.+.|-.= ..|...|..+|++...+.- + ..-.+.|++.|....|+.+|
T Consensus 180 LE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 180 LEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 7776 565555443 7899999999998776621 1 23478899998877666665
No 364
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=0.0013 Score=68.37 Aligned_cols=93 Identities=18% Similarity=0.235 Sum_probs=74.7
Q ss_pred cceeEEEeeecccccccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeE-EEEEecCCCEEEEEecCCcEEEE
Q 007234 66 VDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVS-AISFATHGSCIYSAGADGMVCEI 144 (612)
Q Consensus 66 ~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~-~l~~sp~~~~l~s~s~dg~v~iw 144 (612)
....-+.|.|. -.++|+++.+|.|.++.++ .+.++.+. -|...++ +++|.|||+.++.|-.||+|++.
T Consensus 21 ~~i~~~ewnP~---------~dLiA~~t~~gelli~R~n-~qRlwtip-~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~ 89 (665)
T KOG4640|consen 21 INIKRIEWNPK---------MDLIATRTEKGELLIHRLN-WQRLWTIP-IPGENVTASLCWRPDGKLLAVGFKDGTIRLH 89 (665)
T ss_pred cceEEEEEcCc---------cchhheeccCCcEEEEEec-cceeEecc-CCCCccceeeeecCCCCEEEEEecCCeEEEE
Confidence 34556778776 6789999999999999988 77777774 3666666 99999999999999999999999
Q ss_pred ECCCCceeEEEec-CCCCeeEEEECC
Q 007234 145 DPLTGSLLGKFRA-STKGISCMAVSS 169 (612)
Q Consensus 145 d~~~~~~~~~~~~-~~~~v~~l~~sp 169 (612)
|+.++..+..+.. ....|.++-|++
T Consensus 90 Dve~~~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 90 DVEKGGRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred EccCCCceeccccccccchheeeccc
Confidence 9999988776322 334777887863
No 365
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.24 E-value=0.062 Score=55.50 Aligned_cols=169 Identities=15% Similarity=0.221 Sum_probs=91.3
Q ss_pred CCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEe--c------CCCCeeEEEEC-----CCC---CEEEEeC
Q 007234 115 CHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR--A------STKGISCMAVS-----SDG---KMLATAA 178 (612)
Q Consensus 115 ~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~--~------~~~~v~~l~~s-----pdg---~~l~~~~ 178 (612)
...++|++++.|.-| +++.|..+|.+.+.|++....+..-. . ....++++.|+ .|+ -.|++|.
T Consensus 84 ~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGT 162 (395)
T PF08596_consen 84 AKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGT 162 (395)
T ss_dssp --S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEE
T ss_pred ccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEe
Confidence 346889999998544 89999999999999998777766522 1 12367888886 233 4566665
Q ss_pred --CeEEEEEcC--C-Cee----EEEEecCCCCEEEEE-EeeC---------------------CcEEEEEEcCCCeEEEE
Q 007234 179 --GQLKTFNCS--D-HKK----MQKFSGHPGAVRFMT-FSDN---------------------GKYVLSSAVGERYIALW 227 (612)
Q Consensus 179 --g~i~lwd~~--~-~~~----~~~~~~h~~~v~~l~-~sp~---------------------~~~l~s~s~~d~~i~vw 227 (612)
|.+.+|.+- . +.. ......+.++|..|. |+.+ ..+++.++ +..++++
T Consensus 163 n~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS--e~~irv~ 240 (395)
T PF08596_consen 163 NSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS--ESDIRVF 240 (395)
T ss_dssp TTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE---SSEEEEE
T ss_pred CCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc--ccceEEE
Confidence 899888764 1 211 122224667776664 3211 12455543 6789999
Q ss_pred EcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccC
Q 007234 228 RTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK 291 (612)
Q Consensus 228 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~ 291 (612)
...+.+.. ...... ......+.+-+..-...+..|++-..+|.|++|.+...+.+...+
T Consensus 241 ~~~~~k~~----~K~~~~-~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~ 299 (395)
T PF08596_consen 241 KPPKSKGA----HKSFDD-PFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVS 299 (395)
T ss_dssp -TT---EE----EEE-SS--EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE
T ss_pred eCCCCccc----ceeecc-ccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhccc
Confidence 98877643 122222 122222222100000356778888999999999999888775443
No 366
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.21 E-value=0.16 Score=48.65 Aligned_cols=194 Identities=12% Similarity=0.158 Sum_probs=105.0
Q ss_pred ceeEEEeeecccccccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEEC
Q 007234 67 DYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDP 146 (612)
Q Consensus 67 ~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~ 146 (612)
..+.+.|.+.+ +.++++....+.|..++. +|+.+.++.-.-.+..-++++..++.++++--.++.+.++++
T Consensus 23 e~SGLTy~pd~--------~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~ 93 (248)
T PF06977_consen 23 ELSGLTYNPDT--------GTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTI 93 (248)
T ss_dssp -EEEEEEETTT--------TEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred CccccEEcCCC--------CeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence 35667777764 667888888888988897 477777764333567889999888876666656899999987
Q ss_pred CCCc------eeEEEe-----cCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCC---CeeE--EEE------ecCCCCE
Q 007234 147 LTGS------LLGKFR-----ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSD---HKKM--QKF------SGHPGAV 202 (612)
Q Consensus 147 ~~~~------~~~~~~-----~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~---~~~~--~~~------~~h~~~v 202 (612)
.... ....+. .+...+-.++|+|.++.|+++. .-..+|.+.. ...+ ... ......+
T Consensus 94 ~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 173 (248)
T PF06977_consen 94 DDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDL 173 (248)
T ss_dssp ----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS--
T ss_pred eccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccc
Confidence 3321 112222 2334789999999877777766 3444444432 1111 111 1233457
Q ss_pred EEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecC-------CceeEEeEEecCCccCCCCcEEEEEecCCc
Q 007234 203 RFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEH-------PAVFMDCRCIDNGGVDDAGLYVLAISETGV 275 (612)
Q Consensus 203 ~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~ 275 (612)
.++.++|....|+.-+..++.+..+| ..++.. ....+.. .-.-...+++. ++|+ |...++-+.
T Consensus 174 S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~---~~~~L~~g~~gl~~~~~QpEGIa~d-----~~G~-LYIvsEpNl 243 (248)
T PF06977_consen 174 SGLSYDPRTGHLLILSDESRLLLELD-RQGRVV---SSLSLDRGFHGLSKDIPQPEGIAFD-----PDGN-LYIVSEPNL 243 (248)
T ss_dssp -EEEEETTTTEEEEEETTTTEEEEE--TT--EE---EEEE-STTGGG-SS---SEEEEEE------TT---EEEEETTTE
T ss_pred cceEEcCCCCeEEEEECCCCeEEEEC-CCCCEE---EEEEeCCcccCcccccCCccEEEEC-----CCCC-EEEEcCCce
Confidence 88999997665555556888999998 444432 1222222 11223556675 7775 445556665
Q ss_pred EEEE
Q 007234 276 CYIW 279 (612)
Q Consensus 276 i~iw 279 (612)
.++|
T Consensus 244 fy~f 247 (248)
T PF06977_consen 244 FYRF 247 (248)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 5554
No 367
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.18 E-value=0.1 Score=49.48 Aligned_cols=181 Identities=13% Similarity=0.110 Sum_probs=105.7
Q ss_pred CcEEEEEECC-----CcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEec------------------CCcEE
Q 007234 86 SSLLVLGTGG-----GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA------------------DGMVC 142 (612)
Q Consensus 86 ~~~l~~gs~~-----g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~------------------dg~v~ 142 (612)
+.+|+..-+| |-|-|||...+-...--...|.-.-..+.|.+||+.++.+.. .-++.
T Consensus 125 G~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlv 204 (366)
T COG3490 125 GRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLV 204 (366)
T ss_pred CcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEE
Confidence 5666655444 448899998654322223567778889999999999888742 11334
Q ss_pred EEECCCCceeEEEec----CCCCeeEEEECCCCCEEEEeC--Ce-----EEEEEcCCCeeEEEEe-------cCCCCEEE
Q 007234 143 EIDPLTGSLLGKFRA----STKGISCMAVSSDGKMLATAA--GQ-----LKTFNCSDHKKMQKFS-------GHPGAVRF 204 (612)
Q Consensus 143 iwd~~~~~~~~~~~~----~~~~v~~l~~spdg~~l~~~~--g~-----i~lwd~~~~~~~~~~~-------~h~~~v~~ 204 (612)
+.|..+|+.+.+..- +.-.+..++..+||+.++.+- |. -.+=-...++.+.-+. .-...|-+
T Consensus 205 lld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigs 284 (366)
T COG3490 205 LLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGS 284 (366)
T ss_pred EEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhh
Confidence 445455655544322 234688888888888777654 21 1111112333333222 12356778
Q ss_pred EEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEE
Q 007234 205 MTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY 280 (612)
Q Consensus 205 l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd 280 (612)
++.+.+..+++.++-..+...+||..++.... ...-.....+. +.+.-+++.+.+|.+.++.
T Consensus 285 iA~n~~~glV~lTSP~GN~~vi~da~tG~vv~-------~a~l~daaGva-------~~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 285 IAANRRDGLVALTSPRGNRAVIWDAATGAVVS-------EAALPDAAGVA-------AAKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred eeecccCCeEEEecCCCCeEEEEEcCCCcEEe-------cccccccccce-------eccCceEEecCCceEEecc
Confidence 88886666666665455678899999997441 11111111111 3445577778888888874
No 368
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.15 E-value=0.0042 Score=68.52 Aligned_cols=95 Identities=21% Similarity=0.280 Sum_probs=73.2
Q ss_pred CcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeE-
Q 007234 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISC- 164 (612)
Q Consensus 86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~- 164 (612)
+..+++|+..|.|...|+.++-....-...-.++|++++|+.+|..++.|-.+|.|.+||+..++..+.+..+..+.++
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~v 178 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGV 178 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceE
Confidence 5568999999999999987753211111234679999999999999999999999999999999999988776665444
Q ss_pred --EEECCCCCEEEEeC--Ce
Q 007234 165 --MAVSSDGKMLATAA--GQ 180 (612)
Q Consensus 165 --l~~spdg~~l~~~~--g~ 180 (612)
+.+..++..+++++ |.
T Consensus 179 i~v~~t~~nS~llt~D~~Gs 198 (1206)
T KOG2079|consen 179 IFVGRTSQNSKLLTSDTGGS 198 (1206)
T ss_pred EEEEEeCCCcEEEEccCCCc
Confidence 44556677788887 54
No 369
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.15 E-value=0.022 Score=59.67 Aligned_cols=130 Identities=12% Similarity=0.189 Sum_probs=75.0
Q ss_pred CcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEE
Q 007234 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCM 165 (612)
Q Consensus 86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l 165 (612)
++++++ +.+|.-.||.....+.. . .+.-..+.|.+.+ .+++-...++|.++.--..+....++.. ..+..|
T Consensus 44 gr~v~V-~g~geY~iyt~~~~r~k-~-----~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~~k~i~~~-~~~~~I 114 (443)
T PF04053_consen 44 GRFVLV-CGDGEYEIYTALAWRNK-A-----FGSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNEVVKSIKLP-FSVEKI 114 (443)
T ss_dssp SSEEEE-EETTEEEEEETTTTEEE-E-----EEE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-TT-----S-S-EEEE
T ss_pred CCEEEE-EcCCEEEEEEccCCccc-c-----cCceeEEEEecCc-cEEEEECCCeEEEEEcCccccceEEcCC-cccceE
Confidence 666666 77888888875444332 1 2344578898855 4777777888999742222222233322 123333
Q ss_pred EECCCCCEEEEeC-CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCC
Q 007234 166 AVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (612)
Q Consensus 166 ~~spdg~~l~~~~-g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~ 231 (612)
-. |.+|+..+ +.|.+||+.+++.++++.-. +|..+.|+++|.+++..+ +..+.+++.+.
T Consensus 115 f~---G~LL~~~~~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t--~~~i~il~~~~ 174 (443)
T PF04053_consen 115 FG---GNLLGVKSSDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVT--KDSIYILKYNL 174 (443)
T ss_dssp E----SSSEEEEETTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE---S-SEEEEEE-H
T ss_pred Ec---CcEEEEECCCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEe--CCeEEEEEecc
Confidence 22 77777777 77999999999999998733 489999999999998886 44677776543
No 370
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.14 E-value=0.45 Score=50.01 Aligned_cols=188 Identities=13% Similarity=0.121 Sum_probs=105.8
Q ss_pred CcEEEEE-ECCCc----EEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCC-----------cEEEEECCCC
Q 007234 86 SSLLVLG-TGGGD----VLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADG-----------MVCEIDPLTG 149 (612)
Q Consensus 86 ~~~l~~g-s~~g~----I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg-----------~v~iwd~~~~ 149 (612)
+++++.+ +.+|. ++++|+.+|+.+...... ..-..+.|.++++.|+....+. .|+.|.+.+.
T Consensus 135 g~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~--~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~ 212 (414)
T PF02897_consen 135 GKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN--PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTP 212 (414)
T ss_dssp SSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE--EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-
T ss_pred CCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc--cccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCC
Confidence 6666655 55565 999999999876544321 1122399999988876665333 3788888766
Q ss_pred cee--EEEecCCCC--eeEEEECCCCCEEEEeC------CeEEEEEcCCC----eeEEEEecCCCCEEEEEEeeCCcEEE
Q 007234 150 SLL--GKFRASTKG--ISCMAVSSDGKMLATAA------GQLKTFNCSDH----KKMQKFSGHPGAVRFMTFSDNGKYVL 215 (612)
Q Consensus 150 ~~~--~~~~~~~~~--v~~l~~spdg~~l~~~~------g~i~lwd~~~~----~~~~~~~~h~~~v~~l~~sp~~~~l~ 215 (612)
..- ..+...... ...+..++|+++++... ..+++.|+..+ .....+..+...+....-+..+.+++
T Consensus 213 ~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi 292 (414)
T PF02897_consen 213 QSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHHGDRLYI 292 (414)
T ss_dssp GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEETTEEEE
T ss_pred hHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEccCCEEEE
Confidence 432 445444333 56888999999988654 25888898875 33444444444444433334555554
Q ss_pred EEEc--CCCeEEEEEcCCCccccceeeEeecCCc-eeEEeEEecCCccCCCCcEEEEEecCC--cEEEEECC
Q 007234 216 SSAV--GERYIALWRTDGVKKQSASCVLAMEHPA-VFMDCRCIDNGGVDDAGLYVLAISETG--VCYIWYGQ 282 (612)
Q Consensus 216 s~s~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~t~s~dg--~i~iwd~~ 282 (612)
.+.. ..+.|...++.......... ....+.. ..+..+... .+.+++....++ .|+++++.
T Consensus 293 ~Tn~~a~~~~l~~~~l~~~~~~~~~~-~l~~~~~~~~l~~~~~~------~~~Lvl~~~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 293 LTNDDAPNGRLVAVDLADPSPAEWWT-VLIPEDEDVSLEDVSLF------KDYLVLSYRENGSSRLRVYDLD 357 (414)
T ss_dssp EE-TT-TT-EEEEEETTSTSGGGEEE-EEE--SSSEEEEEEEEE------TTEEEEEEEETTEEEEEEEETT
T ss_pred eeCCCCCCcEEEEeccccccccccee-EEcCCCCceeEEEEEEE------CCEEEEEEEECCccEEEEEECC
Confidence 4421 23466666777665321111 2223332 344444332 335555556666 68889988
No 371
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.11 E-value=0.096 Score=57.11 Aligned_cols=123 Identities=12% Similarity=0.195 Sum_probs=71.3
Q ss_pred EEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecC------------CcEEEEECCCCceeEEEecCCCCeeEE
Q 007234 98 VLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD------------GMVCEIDPLTGSLLGKFRASTKGISCM 165 (612)
Q Consensus 98 I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~d------------g~v~iwd~~~~~~~~~~~~~~~~v~~l 165 (612)
|.+++.. +.. ..+..+. ..+.-.|+|+|+.+++.+.. +.+.+.++..++... .....|..+
T Consensus 381 Lwv~~~g-g~~-~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl 453 (591)
T PRK13616 381 LWVGPLG-GVA-VQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISEL 453 (591)
T ss_pred EEEEeCC-Ccc-eeeecCC--CCCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeE
Confidence 5555642 222 3333332 37889999998888777532 223333443333322 224579999
Q ss_pred EECCCCCEEEEeC-CeEEE---EEcCCCee-E---EEEe-cCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEc
Q 007234 166 AVSSDGKMLATAA-GQLKT---FNCSDHKK-M---QKFS-GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRT 229 (612)
Q Consensus 166 ~~spdg~~l~~~~-g~i~l---wd~~~~~~-~---~~~~-~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~ 229 (612)
.|||||..++... |.|++ -....|.. + ..+. +-...+.++.|.+++.+++... ++...+|.+
T Consensus 454 ~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~--~~~~~v~~v 524 (591)
T PRK13616 454 QLSRDGVRAAMIIGGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRS--DPEHPVWYV 524 (591)
T ss_pred EECCCCCEEEEEECCEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEEEEEec--CCCCceEEE
Confidence 9999999988766 77777 44344531 1 1122 2233468899999998654433 333344544
No 372
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.06 E-value=0.18 Score=52.11 Aligned_cols=76 Identities=11% Similarity=0.215 Sum_probs=51.5
Q ss_pred CCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEE-EEEe-eC----------------CcEEEEEEc
Q 007234 160 KGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRF-MTFS-DN----------------GKYVLSSAV 219 (612)
Q Consensus 160 ~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~-l~~s-p~----------------~~~l~s~s~ 219 (612)
..+.+++.+|++++.|+.+ |.|.++|+.++..++.++|-...=.. +... +. ..+|+.=.-
T Consensus 308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyap 387 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAP 387 (415)
T ss_pred ceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEec
Confidence 3477899999999999888 99999999999888877775543111 1111 11 123333333
Q ss_pred CCCeEEEEEcCCCccc
Q 007234 220 GERYIALWRTDGVKKQ 235 (612)
Q Consensus 220 ~d~~i~vwd~~~~~~~ 235 (612)
.-|.|.||.++.+...
T Consensus 388 rRg~lEvW~~~~g~Rv 403 (415)
T PF14655_consen 388 RRGILEVWSMRQGPRV 403 (415)
T ss_pred cCCeEEEEecCCCCEE
Confidence 5778899998888644
No 373
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.04 E-value=0.22 Score=52.02 Aligned_cols=97 Identities=22% Similarity=0.196 Sum_probs=58.0
Q ss_pred EecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecC-CCC
Q 007234 125 FATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGH-PGA 201 (612)
Q Consensus 125 ~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h-~~~ 201 (612)
++.+....+....++.+.+.+-...+. +. ..+++..+++||+|+++|.-. |.+.+.+..-.+.+.++... ...
T Consensus 186 l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~ 261 (410)
T PF04841_consen 186 LSSDRVVEILLANGETIYIIDENSFKQ---ID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSP 261 (410)
T ss_pred eecCcceEEEEecCCEEEEEEcccccc---cc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCC
Confidence 344444444444555555444322211 11 245899999999999998766 88888887666666666543 345
Q ss_pred EEEEEEeeCCcEEEEEEcCCCeEEEEE
Q 007234 202 VRFMTFSDNGKYVLSSAVGERYIALWR 228 (612)
Q Consensus 202 v~~l~~sp~~~~l~s~s~~d~~i~vwd 228 (612)
...+.|+.++..++. ....+.+..
T Consensus 262 p~~~~WCG~dav~l~---~~~~l~lvg 285 (410)
T PF04841_consen 262 PKQMAWCGNDAVVLS---WEDELLLVG 285 (410)
T ss_pred CcEEEEECCCcEEEE---eCCEEEEEC
Confidence 567788766543332 234555554
No 374
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.96 E-value=0.64 Score=48.64 Aligned_cols=187 Identities=16% Similarity=0.225 Sum_probs=93.3
Q ss_pred EEEEcCCCCEEEEEeCC-----------CcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccc
Q 007234 10 LTSFSPALDYFAICSGD-----------ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDR 78 (612)
Q Consensus 10 ~~~fspdg~~las~s~d-----------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~ 78 (612)
.++.+|.|--+|....+ ..|.||+. .|+.+.++. |. .....++.|..
T Consensus 33 ~va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~-sG~ll~~i~----------w~--------~~~iv~~~wt~--- 90 (410)
T PF04841_consen 33 IVAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSS-SGKLLSSIP----------WD--------SGRIVGMGWTD--- 90 (410)
T ss_pred eEEEcCCCceEEEEecCcccccccCCCCcEEEEECC-CCCEeEEEE----------EC--------CCCEEEEEECC---
Confidence 34777777777766544 13666665 355544432 21 13566777765
Q ss_pred ccccccCCcEEEEEECCCcEEEEEcCCCeEEEEec-cCCCCC-----eEEEEEecCCCEEEEEecCCcEEEEECCCCc-e
Q 007234 79 KKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLS-DCHPGG-----VSAISFATHGSCIYSAGADGMVCEIDPLTGS-L 151 (612)
Q Consensus 79 ~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~-~~h~~~-----V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~-~ 151 (612)
...|++-..+|.+++||+.... ...+. ...... +....+..+|-.+++ .++.+.+.+-.... .
T Consensus 91 -------~e~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt--~~~~~~~v~n~~~~~~ 160 (410)
T PF04841_consen 91 -------DEELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYKNGIVVLT--GNNRFYVVNNIDEPVK 160 (410)
T ss_pred -------CCeEEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCCCCEEEEC--CCCeEEEEeCccccch
Confidence 4567888899999999987443 11111 011112 222334435533333 34445444322111 1
Q ss_pred eEEEecCCCCee---------E-EEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEc
Q 007234 152 LGKFRASTKGIS---------C-MAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV 219 (612)
Q Consensus 152 ~~~~~~~~~~v~---------~-l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~ 219 (612)
.+.+........ . ..++.+....+... +.+++.+-...+. +. ..+++..|++||+|++++.-.
T Consensus 161 ~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i~~iavSpng~~iAl~t- 235 (410)
T PF04841_consen 161 LRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---ID-SDGPIIKIAVSPNGKFIALFT- 235 (410)
T ss_pred hhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---cc-CCCCeEEEEECCCCCEEEEEE-
Confidence 111111000000 0 12222332222222 3444333222111 21 246899999999999998886
Q ss_pred CCCeEEEEEcCCCc
Q 007234 220 GERYIALWRTDGVK 233 (612)
Q Consensus 220 ~d~~i~vwd~~~~~ 233 (612)
.+|.+.+...+-.+
T Consensus 236 ~~g~l~v~ssDf~~ 249 (410)
T PF04841_consen 236 DSGNLWVVSSDFSE 249 (410)
T ss_pred CCCCEEEEECcccc
Confidence 68988888765554
No 375
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=96.96 E-value=0.57 Score=48.06 Aligned_cols=163 Identities=11% Similarity=0.128 Sum_probs=90.3
Q ss_pred EEEEEcCCCeEEE-Eec---cCCCCCeEEEEEecCCCEEEEE--ecCC---cEEEEECCCCceeEEEecC-CC---CeeE
Q 007234 98 VLALAVSAGQLKW-RLS---DCHPGGVSAISFATHGSCIYSA--GADG---MVCEIDPLTGSLLGKFRAS-TK---GISC 164 (612)
Q Consensus 98 I~vwd~~~~~~~~-~~~---~~h~~~V~~l~~sp~~~~l~s~--s~dg---~v~iwd~~~~~~~~~~~~~-~~---~v~~ 164 (612)
+.|+|+.+++... ... ..-...+..+.|.++++.|+.. +.+. .+.++|..+++....+... .. ....
T Consensus 160 l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~ 239 (353)
T PF00930_consen 160 LFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDP 239 (353)
T ss_dssp EEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSE
T ss_pred EEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecc
Confidence 5567887776531 111 1234568899999999844433 3332 4667788777654443322 22 2235
Q ss_pred EEEC-CCCCEEEEeC-----CeEEEEEcCCCeeEEEEecCCCCEEE-EEEeeCCcEEEEEEcCC----CeEEEEEcC-CC
Q 007234 165 MAVS-SDGKMLATAA-----GQLKTFNCSDHKKMQKFSGHPGAVRF-MTFSDNGKYVLSSAVGE----RYIALWRTD-GV 232 (612)
Q Consensus 165 l~~s-pdg~~l~~~~-----g~i~lwd~~~~~~~~~~~~h~~~v~~-l~~sp~~~~l~s~s~~d----~~i~vwd~~-~~ 232 (612)
..+. +++..++..+ ..|++++...+.. +.+....-.|.. +.+.++++.++..+..+ +.+..-++. .+
T Consensus 240 ~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~-~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~ 318 (353)
T PF00930_consen 240 PHFLGPDGNEFLWISERDGYRHLYLYDLDGGKP-RQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGG 318 (353)
T ss_dssp EEE-TTTSSEEEEEEETTSSEEEEEEETTSSEE-EESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETT
T ss_pred cccccCCCCEEEEEEEcCCCcEEEEEcccccce-eccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCC
Confidence 5554 7776665544 4888889877763 466656667755 57788877766555332 245555566 43
Q ss_pred ccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEec
Q 007234 233 KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE 272 (612)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~ 272 (612)
... .+......-..+.|+ |+|++++-.+.
T Consensus 319 ~~~------~LT~~~~~~~~~~~S-----pdg~y~v~~~s 347 (353)
T PF00930_consen 319 EPK------CLTCEDGDHYSASFS-----PDGKYYVDTYS 347 (353)
T ss_dssp EEE------ESSTTSSTTEEEEE------TTSSEEEEEEE
T ss_pred CeE------eccCCCCCceEEEEC-----CCCCEEEEEEc
Confidence 322 121111111345666 88888766543
No 376
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.92 E-value=0.0031 Score=39.93 Aligned_cols=39 Identities=33% Similarity=0.693 Sum_probs=33.5
Q ss_pred CeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEE
Q 007234 189 HKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWR 228 (612)
Q Consensus 189 ~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd 228 (612)
+++...+..|...|.++.|.+++.++++++ .|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASAS-DDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEec-CCCeEEEcC
Confidence 355677788999999999999998888887 799999996
No 377
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.88 E-value=0.2 Score=49.37 Aligned_cols=141 Identities=17% Similarity=0.206 Sum_probs=91.4
Q ss_pred CcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEE----------
Q 007234 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKF---------- 155 (612)
Q Consensus 86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~---------- 155 (612)
++.+++|+.+| +.+++........+.. +...|..+...|+-+.+++-+ |+.++++++..-.....-
T Consensus 7 ~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~ 82 (275)
T PF00780_consen 7 GDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRS 82 (275)
T ss_pred CCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccccc
Confidence 78899999999 9999994333332332 334599999999877766664 599999998765433310
Q ss_pred ----ecCCCCeeEEE---ECCCCCEEEEeC-CeEEEEEcCCC-----eeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCC
Q 007234 156 ----RASTKGISCMA---VSSDGKMLATAA-GQLKTFNCSDH-----KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER 222 (612)
Q Consensus 156 ----~~~~~~v~~l~---~spdg~~l~~~~-g~i~lwd~~~~-----~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~ 222 (612)
......+...+ -...+..|+++. ..|.+|..... +..+++. -...+..+.|. ++.++.+. .+
T Consensus 83 ~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~--~~ 157 (275)
T PF00780_consen 83 LPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGT--SK 157 (275)
T ss_pred ccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEe--CC
Confidence 01122444444 223445666665 78888877553 4566665 34778899998 44566664 34
Q ss_pred eEEEEEcCCCccc
Q 007234 223 YIALWRTDGVKKQ 235 (612)
Q Consensus 223 ~i~vwd~~~~~~~ 235 (612)
...+.|+.++...
T Consensus 158 ~f~~idl~~~~~~ 170 (275)
T PF00780_consen 158 GFYLIDLNTGSPS 170 (275)
T ss_pred ceEEEecCCCCce
Confidence 5788999876543
No 378
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.86 E-value=0.34 Score=54.39 Aligned_cols=198 Identities=16% Similarity=0.220 Sum_probs=116.8
Q ss_pred CcEEEEEECCCcEEEEEcCCCeEEEEeccCCCC-------CeEEEEEec----------------CCCEEEEEecCCcEE
Q 007234 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPG-------GVSAISFAT----------------HGSCIYSAGADGMVC 142 (612)
Q Consensus 86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~-------~V~~l~~sp----------------~~~~l~s~s~dg~v~ 142 (612)
+..+++++.++.|.-.|..+|+.++++...... ...++.+.. .+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 678899999999999999999999987532111 123344432 234788889999999
Q ss_pred EEECCCCceeEEEecCCCCe-------------eEEEECC--CCCEEEEe------------CCeEEEEEcCCCeeEEEE
Q 007234 143 EIDPLTGSLLGKFRASTKGI-------------SCMAVSS--DGKMLATA------------AGQLKTFNCSDHKKMQKF 195 (612)
Q Consensus 143 iwd~~~~~~~~~~~~~~~~v-------------~~l~~sp--dg~~l~~~------------~g~i~lwd~~~~~~~~~~ 195 (612)
..|.++|+.+..|... +.+ ..+.-.| .+..+++| +|.|+-+|.++|+.+-.+
T Consensus 274 ALDA~TGk~~W~fg~~-G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGNN-GTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecCC-CceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 9999999988766421 111 1111122 12344444 267999999999988776
Q ss_pred ecC---------CCC--------E-EEEEEeeCCcEEEEEE-----------------cCCCeEEEEEcCCCccccceee
Q 007234 196 SGH---------PGA--------V-RFMTFSDNGKYVLSSA-----------------VGERYIALWRTDGVKKQSASCV 240 (612)
Q Consensus 196 ~~h---------~~~--------v-~~l~~sp~~~~l~s~s-----------------~~d~~i~vwd~~~~~~~~~~~~ 240 (612)
..- .+. + ..+++.+....++... ...+.|.-.|+++++.. -.
T Consensus 353 ~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~---W~ 429 (764)
T TIGR03074 353 DPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKER---WV 429 (764)
T ss_pred ecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceE---EE
Confidence 421 000 0 1223333333322211 01235666677777644 22
Q ss_pred EeecCCce-e------EEeEEecCCccCCCCc---EEEEEecCCcEEEEECCCcceecccC
Q 007234 241 LAMEHPAV-F------MDCRCIDNGGVDDAGL---YVLAISETGVCYIWYGQNIEELRNTK 291 (612)
Q Consensus 241 ~~~~~~~~-~------~~~~~~~~~~~~~~~~---~l~t~s~dg~i~iwd~~~~~~~~~~~ 291 (612)
+...|++. . ...+.+. ..+|+ .++.++.+|.++++|-++|+.+...+
T Consensus 430 ~Q~~~hD~WD~D~~~~p~L~d~~----~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 430 FQTVHHDLWDMDVPAQPSLVDLP----DADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred ecccCCccccccccCCceEEeee----cCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence 32222211 0 1111121 02553 78999999999999999999886544
No 379
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.82 E-value=0.4 Score=45.90 Aligned_cols=171 Identities=16% Similarity=0.092 Sum_probs=100.4
Q ss_pred EEEeccCCCCCeEEEEEecCCCEEEEEecCC--cEEEEECCCCceeEEEecCCC-CeeEEEECCCCCEEEEeC-CeEEEE
Q 007234 109 KWRLSDCHPGGVSAISFATHGSCIYSAGADG--MVCEIDPLTGSLLGKFRASTK-GISCMAVSSDGKMLATAA-GQLKTF 184 (612)
Q Consensus 109 ~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg--~v~iwd~~~~~~~~~~~~~~~-~v~~l~~spdg~~l~~~~-g~i~lw 184 (612)
+.++......-..++.|..+|.++-+.+.-| .|+.+|+.+++......-... .-..++...|.-+.++=- +...+|
T Consensus 36 v~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~y 115 (264)
T PF05096_consen 36 VETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVY 115 (264)
T ss_dssp EEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEE
T ss_pred EEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEE
Confidence 3344333345567899987888888888766 799999999988776554332 334556554443344433 899999
Q ss_pred EcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCC
Q 007234 185 NCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAG 264 (612)
Q Consensus 185 d~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (612)
|..+.+.+.+++- .+.=..++ .|++.|+.+. +...+..+|..+-+......+.....+...+.-+-+ -+|
T Consensus 116 d~~tl~~~~~~~y-~~EGWGLt--~dg~~Li~SD-GS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~------i~G 185 (264)
T PF05096_consen 116 DPNTLKKIGTFPY-PGEGWGLT--SDGKRLIMSD-GSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEY------ING 185 (264)
T ss_dssp ETTTTEEEEEEE--SSS--EEE--ECSSCEEEE--SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEE------ETT
T ss_pred ccccceEEEEEec-CCcceEEE--cCCCEEEEEC-CccceEEECCcccceEEEEEEEECCEECCCcEeEEE------EcC
Confidence 9999999988863 34456666 5677777664 577899999877654421111111112222333333 245
Q ss_pred cEEEEEecCCcEEEEECCCcceecc
Q 007234 265 LYVLAISETGVCYIWYGQNIEELRN 289 (612)
Q Consensus 265 ~~l~t~s~dg~i~iwd~~~~~~~~~ 289 (612)
...|-.=....|..-|..+|+....
T Consensus 186 ~IyANVW~td~I~~Idp~tG~V~~~ 210 (264)
T PF05096_consen 186 KIYANVWQTDRIVRIDPETGKVVGW 210 (264)
T ss_dssp EEEEEETTSSEEEEEETTT-BEEEE
T ss_pred EEEEEeCCCCeEEEEeCCCCeEEEE
Confidence 5555555566778888888877653
No 380
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.80 E-value=0.14 Score=55.85 Aligned_cols=180 Identities=14% Similarity=0.129 Sum_probs=93.3
Q ss_pred CcEEEEEECC-Cc-----EEEEEcCCCeEEEEeccCCCCCeEEEEE-ecCCCEEEEEecCC-----cEEEEECCCCce--
Q 007234 86 SSLLVLGTGG-GD-----VLALAVSAGQLKWRLSDCHPGGVSAISF-ATHGSCIYSAGADG-----MVCEIDPLTGSL-- 151 (612)
Q Consensus 86 ~~~l~~gs~~-g~-----I~vwd~~~~~~~~~~~~~h~~~V~~l~~-sp~~~~l~s~s~dg-----~v~iwd~~~~~~-- 151 (612)
+.+.++|+.+ |. +..||+.+++-.. ... -..+-..+.. .-+|...++||.|| +|-.||..+.+-
T Consensus 333 ~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~-~a~-M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~ 410 (571)
T KOG4441|consen 333 GKLYVVGGYDSGSDRLSSVERYDPRTNQWTP-VAP-MNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTP 410 (571)
T ss_pred CEEEEEccccCCCcccceEEEecCCCCceec-cCC-ccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccc
Confidence 6678888888 33 8889998887432 111 1111111111 12677888888886 477788765532
Q ss_pred eEEEecCCCCeeEEEECCCCCEEEEeC--------CeEEEEEcCCCeeEE--EEecCCCCEEEEEEeeCCcEEEEEEcCC
Q 007234 152 LGKFRASTKGISCMAVSSDGKMLATAA--------GQLKTFNCSDHKKMQ--KFSGHPGAVRFMTFSDNGKYVLSSAVGE 221 (612)
Q Consensus 152 ~~~~~~~~~~v~~l~~spdg~~l~~~~--------g~i~lwd~~~~~~~~--~~~~h~~~v~~l~~sp~~~~l~s~s~~d 221 (612)
+..+......+..+. -+|++.++|+ .++..||..+++-.. .+....... .++ .-++...+.+| .|
T Consensus 411 va~m~~~r~~~gv~~--~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~-g~a-~~~~~iYvvGG-~~ 485 (571)
T KOG4441|consen 411 VAPMLTRRSGHGVAV--LGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGF-GVA-VLNGKIYVVGG-FD 485 (571)
T ss_pred cCCCCcceeeeEEEE--ECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccc-eEE-EECCEEEEECC-cc
Confidence 111111111222222 2577777776 368899988875432 221111111 122 23455556665 45
Q ss_pred C-----eEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCC-----cEEEEECC
Q 007234 222 R-----YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG-----VCYIWYGQ 282 (612)
Q Consensus 222 ~-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg-----~i~iwd~~ 282 (612)
+ +|..||..+.+-. .+..+..+.....++. -++...++|+.|| +|..||..
T Consensus 486 ~~~~~~~VE~ydp~~~~W~---~v~~m~~~rs~~g~~~-------~~~~ly~vGG~~~~~~l~~ve~ydp~ 546 (571)
T KOG4441|consen 486 GTSALSSVERYDPETNQWT---MVAPMTSPRSAVGVVV-------LGGKLYAVGGFDGNNNLNTVECYDPE 546 (571)
T ss_pred CCCccceEEEEcCCCCcee---EcccCccccccccEEE-------ECCEEEEEecccCccccceeEEcCCC
Confidence 4 3777888776533 2222222222222222 3566777777765 34455443
No 381
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.79 E-value=0.0037 Score=39.56 Aligned_cols=32 Identities=31% Similarity=0.532 Sum_probs=29.4
Q ss_pred cCCCCCeEEEEEecCCCEEEEEecCCcEEEEE
Q 007234 114 DCHPGGVSAISFATHGSCIYSAGADGMVCEID 145 (612)
Q Consensus 114 ~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd 145 (612)
..|...|.++.|++++..+++++.|+.+++||
T Consensus 9 ~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 9 KGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 46888999999999999999999999999996
No 382
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.71 E-value=0.0071 Score=63.08 Aligned_cols=91 Identities=12% Similarity=0.133 Sum_probs=75.8
Q ss_pred CCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCee-EEEECCCCCEEEEeC--CeEEEEEcCCCeeEEE
Q 007234 118 GGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGIS-CMAVSSDGKMLATAA--GQLKTFNCSDHKKMQK 194 (612)
Q Consensus 118 ~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~-~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~ 194 (612)
..|.-+.|+|.-..+|.+..+|.|.+..+. .+.+.++..+...++ +++|.|||+.+|+|- |+|++.|+.++..+..
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS 99 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence 467888999998999999999999999887 788888886666676 999999999999997 9999999999877665
Q ss_pred E-ecCCCCEEEEEEee
Q 007234 195 F-SGHPGAVRFMTFSD 209 (612)
Q Consensus 195 ~-~~h~~~v~~l~~sp 209 (612)
+ .....+|.++.|.+
T Consensus 100 ~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 100 FLFSVETDISKGIWDR 115 (665)
T ss_pred cccccccchheeeccc
Confidence 3 23456777888864
No 383
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.66 E-value=0.11 Score=53.35 Aligned_cols=136 Identities=16% Similarity=0.350 Sum_probs=93.6
Q ss_pred EEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCE--E-----EEEecCCcEEEEECCCCce--eEEEecC--
Q 007234 90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSC--I-----YSAGADGMVCEIDPLTGSL--LGKFRAS-- 158 (612)
Q Consensus 90 ~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~--l-----~s~s~dg~v~iwd~~~~~~--~~~~~~~-- 158 (612)
..+..-..++-.|+++|+.+.... -|.. |+-+.+.|+++. + +.|-.|+.|.-||++-... +..-+.|
T Consensus 350 ~~~~~~~~l~klDIE~GKIVeEWk-~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy 427 (644)
T KOG2395|consen 350 MDGGEQDKLYKLDIERGKIVEEWK-FEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQY 427 (644)
T ss_pred eCCCCcCcceeeecccceeeeEee-ccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccc
Confidence 344444559999999999986663 2433 777777776542 2 3455788999999873321 1111222
Q ss_pred --CCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcC
Q 007234 159 --TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD 230 (612)
Q Consensus 159 --~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~ 230 (612)
.....|.+-..+| ++++|+ |.|++||--..+....+++-..+|..+..+.+|++++.++ +.++.+.++.
T Consensus 428 ~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc--~tyLlLi~t~ 500 (644)
T KOG2395|consen 428 STKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC--KTYLLLIDTL 500 (644)
T ss_pred ccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec--ccEEEEEEEe
Confidence 2367788888777 555555 9999999733333455788899999999999999998875 6778777764
No 384
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.64 E-value=0.2 Score=40.87 Aligned_cols=102 Identities=17% Similarity=0.284 Sum_probs=64.8
Q ss_pred cceeEE-EEcCCC-CEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccc
Q 007234 6 IRDILT-SFSPAL-DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (612)
Q Consensus 6 V~~l~~-~fspdg-~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (612)
|+++|+ .|.-|| +.|+.|+.|..||||+- .+.+.++.... .++++.-..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~~-------------------~v~~L~~~~-------- 52 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITETD-------------------KVTSLCSLG-------- 52 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEeccc-------------------ceEEEEEcC--------
Confidence 455532 244454 57889999999999984 45666664211 222222221
Q ss_pred cCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEec-C--C-CEEEEEecCCcEE
Q 007234 84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-H--G-SCIYSAGADGMVC 142 (612)
Q Consensus 84 ~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp-~--~-~~l~s~s~dg~v~ 142 (612)
...++.+..+|+|-+|+- ...+++....| .++++.+.. + | .-|++|-.+|.|-
T Consensus 53 --~~~F~Y~l~NGTVGvY~~--~~RlWRiKSK~--~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 53 --GGRFAYALANGTVGVYDR--SQRLWRIKSKN--QVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred --CCEEEEEecCCEEEEEeC--cceeeeeccCC--CeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 566999999999999975 44555664333 477776654 2 2 2488888888764
No 385
>PHA02713 hypothetical protein; Provisional
Probab=96.61 E-value=0.16 Score=55.40 Aligned_cols=186 Identities=6% Similarity=-0.001 Sum_probs=90.5
Q ss_pred CcEEEEEECC------CcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCC-----cEEEEECCCCceeE-
Q 007234 86 SSLLVLGTGG------GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADG-----MVCEIDPLTGSLLG- 153 (612)
Q Consensus 86 ~~~l~~gs~~------g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg-----~v~iwd~~~~~~~~- 153 (612)
+.+.++|+.+ ..+..||+.++.-. .+..-....-......-+|+..+.||.++ ++..||..+.+-..
T Consensus 304 ~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~-~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~ 382 (557)
T PHA02713 304 NEIIIAGGYNFNNPSLNKVYKINIENKIHV-ELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKML 382 (557)
T ss_pred CEEEEEcCCCCCCCccceEEEEECCCCeEe-eCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEEC
Confidence 5667777753 23788998887542 11111111111111222577777777654 48889987653221
Q ss_pred -EEecCCCCeeEEEECCCCCEEEEeC--C-----------------------eEEEEEcCCCeeEEEEecCCCCEEEEEE
Q 007234 154 -KFRASTKGISCMAVSSDGKMLATAA--G-----------------------QLKTFNCSDHKKMQKFSGHPGAVRFMTF 207 (612)
Q Consensus 154 -~~~~~~~~v~~l~~spdg~~l~~~~--g-----------------------~i~lwd~~~~~~~~~~~~h~~~v~~l~~ 207 (612)
.+.........+.+ +|++.+.|+ + .+..||..+.+-...-+-.......-..
T Consensus 383 ~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~ 460 (557)
T PHA02713 383 PDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVV 460 (557)
T ss_pred CCCCcccccccEEEE--CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCcEE
Confidence 12211122222222 577777765 1 3677888776532111111111111122
Q ss_pred eeCCcEEEEEEcCC-----CeEEEEEcCC-CccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCC--cEEEE
Q 007234 208 SDNGKYVLSSAVGE-----RYIALWRTDG-VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG--VCYIW 279 (612)
Q Consensus 208 sp~~~~l~s~s~~d-----~~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg--~i~iw 279 (612)
.-+|+..+.||..+ ..+..||..+ .+-. .+..+..+-.....+. -+|+..++|+.+| .+..|
T Consensus 461 ~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~---~~~~m~~~r~~~~~~~-------~~~~iyv~Gg~~~~~~~e~y 530 (557)
T PHA02713 461 SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWE---LITTTESRLSALHTIL-------HDNTIMMLHCYESYMLQDTF 530 (557)
T ss_pred EECCEEEEEeCCCCCCccceeEEEecCCCCCCee---EccccCcccccceeEE-------ECCEEEEEeeecceeehhhc
Confidence 33566556665211 2467788877 4422 2223332222223332 3568888888887 45555
Q ss_pred ECCCc
Q 007234 280 YGQNI 284 (612)
Q Consensus 280 d~~~~ 284 (612)
|..+.
T Consensus 531 d~~~~ 535 (557)
T PHA02713 531 NVYTY 535 (557)
T ss_pred Ccccc
Confidence 54433
No 386
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.60 E-value=0.038 Score=56.67 Aligned_cols=150 Identities=13% Similarity=0.139 Sum_probs=98.6
Q ss_pred cCCCCEEE-EEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEE
Q 007234 14 SPALDYFA-ICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLG 92 (612)
Q Consensus 14 spdg~~la-s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~g 92 (612)
..+.++|. ++.....++=.|++.|+.+.+++.+.. +...-+.++..-..+ ....-++|
T Consensus 342 ~~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql--------------------~~e~TlvG 400 (644)
T KOG2395|consen 342 RADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQL--------------------TSEQTLVG 400 (644)
T ss_pred ccccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcc--------------------cccccEEe
Confidence 33444444 445556677889999999999986655 333334443111111 12334778
Q ss_pred ECCCcEEEEEcCCCeE-EEEeccCCC----CCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEE-EecCCCCeeEEE
Q 007234 93 TGGGDVLALAVSAGQL-KWRLSDCHP----GGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK-FRASTKGISCMA 166 (612)
Q Consensus 93 s~~g~I~vwd~~~~~~-~~~~~~~h~----~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~-~~~~~~~v~~l~ 166 (612)
-.+..|.-||++-... .....++|. ..-.|++-..+| ++++||.+|.|++||- .++...+ +.+...+|..|.
T Consensus 401 Ls~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVd 478 (644)
T KOG2395|consen 401 LSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVD 478 (644)
T ss_pred ecCCceEEecccccCcceeeeeeccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEE
Confidence 8899999999874322 111222232 234566555555 7999999999999996 5555444 777788999999
Q ss_pred ECCCCCEEEEeC-CeEEEEEc
Q 007234 167 VSSDGKMLATAA-GQLKTFNC 186 (612)
Q Consensus 167 ~spdg~~l~~~~-g~i~lwd~ 186 (612)
.+.||+++++.+ ..+.+.++
T Consensus 479 vtadGKwil~Tc~tyLlLi~t 499 (644)
T KOG2395|consen 479 VTADGKWILATCKTYLLLIDT 499 (644)
T ss_pred eeccCcEEEEecccEEEEEEE
Confidence 999999998877 67777665
No 387
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.60 E-value=0.13 Score=41.99 Aligned_cols=99 Identities=14% Similarity=0.276 Sum_probs=63.9
Q ss_pred eEEEEEec---CC-CEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEEEECCCCCEEEEeC-CeEEEEEcCCCeeEEE
Q 007234 120 VSAISFAT---HG-SCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQK 194 (612)
Q Consensus 120 V~~l~~sp---~~-~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~-g~i~lwd~~~~~~~~~ 194 (612)
|+++++.. +| +.|++||.|..|++|+- .+.+..+.. ...|++++-...+++.+.-. |+|-+|+-. ..+..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e-~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~--~RlWR 76 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITE-TDKVTSLCSLGGGRFAYALANGTVGVYDRS--QRLWR 76 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEec-ccceEEEEEcCCCEEEEEecCCEEEEEeCc--ceeee
Confidence 66777655 33 46999999999999983 466777764 45788888877766554444 999999753 33344
Q ss_pred EecCCCCEEEEEEee---CCc-EEEEEEcCCCeEE
Q 007234 195 FSGHPGAVRFMTFSD---NGK-YVLSSAVGERYIA 225 (612)
Q Consensus 195 ~~~h~~~v~~l~~sp---~~~-~l~s~s~~d~~i~ 225 (612)
.+... .+.++.+.. ||. .|+++- .+|.|-
T Consensus 77 iKSK~-~~~~~~~~D~~gdG~~eLI~Gw-snGkve 109 (111)
T PF14783_consen 77 IKSKN-QVTSMAFYDINGDGVPELIVGW-SNGKVE 109 (111)
T ss_pred eccCC-CeEEEEEEcCCCCCceEEEEEe-cCCeEE
Confidence 44333 356665543 332 566665 577664
No 388
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.59 E-value=0.18 Score=47.88 Aligned_cols=126 Identities=18% Similarity=0.335 Sum_probs=84.8
Q ss_pred CcEEEEEECCCc-EEEEEcCCCeEEEEec-------cCCCCCeEEEEEecCCCEEEEEecC-----CcEEEEECCCC-ce
Q 007234 86 SSLLVLGTGGGD-VLALAVSAGQLKWRLS-------DCHPGGVSAISFATHGSCIYSAGAD-----GMVCEIDPLTG-SL 151 (612)
Q Consensus 86 ~~~l~~gs~~g~-I~vwd~~~~~~~~~~~-------~~h~~~V~~l~~sp~~~~l~s~s~d-----g~v~iwd~~~~-~~ 151 (612)
..-++.+-.-|+ ..++|..+++....+. .+|. .|||||.+|+..-.| |.|-+||.+.+ +.
T Consensus 80 ~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHG------vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqr 153 (366)
T COG3490 80 PRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHG------VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQR 153 (366)
T ss_pred cceEEEEecCCceEEEECCCCCcCcEEEecccCceeeccc------ccCCCCcEEEeecCCCCCCCceEEEEecccccce
Confidence 345677777777 6788988877654332 2343 589999998876443 78999998754 56
Q ss_pred eEEEecCCCCeeEEEECCCCCEEEEeCCeEEEE--------------------EcCCCeeEEE--Ee--cCCCCEEEEEE
Q 007234 152 LGKFRASTKGISCMAVSSDGKMLATAAGQLKTF--------------------NCSDHKKMQK--FS--GHPGAVRFMTF 207 (612)
Q Consensus 152 ~~~~~~~~~~v~~l~~spdg~~l~~~~g~i~lw--------------------d~~~~~~~~~--~~--~h~~~v~~l~~ 207 (612)
+.++..|.-....+.+.+||+.++.+.|-|... |..+|.++.+ ++ -+...|..++.
T Consensus 154 vgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~ 233 (366)
T COG3490 154 VGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDI 233 (366)
T ss_pred ecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeee
Confidence 677888887889999999999999988644443 3233333222 11 23445777777
Q ss_pred eeCCcEEEEE
Q 007234 208 SDNGKYVLSS 217 (612)
Q Consensus 208 sp~~~~l~s~ 217 (612)
-+||+.++-+
T Consensus 234 g~dgtvwfgc 243 (366)
T COG3490 234 GRDGTVWFGC 243 (366)
T ss_pred CCCCcEEEEE
Confidence 7777655443
No 389
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.42 E-value=1 Score=50.68 Aligned_cols=206 Identities=15% Similarity=0.200 Sum_probs=117.7
Q ss_pred CCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEE-eeeccccc------ccccCCcEE
Q 007234 17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMK-WLSVDRKK------KRKLGSSLL 89 (612)
Q Consensus 17 g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~-w~~~~~~~------~~~~~~~~l 89 (612)
+..+..++.++.|.-.|.++|+.+..+......... + .+. .+.-+. |....... .-...+..|
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~--~------~~~--~cRGvay~~~p~~~~~~~~~~~p~~~~~rV 263 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAG--R------QHQ--TCRGVSYYDAPAAAAGPAAPAAPADCARRI 263 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccc--c------ccc--cccceEEecCCcccccccccccccccCCEE
Confidence 446777788899999999999999988643321100 0 000 000011 11100000 000115678
Q ss_pred EEEECCCcEEEEEcCCCeEEEEeccCCCCCeE-------------EEEEec--CCCEEEEEec----------CCcEEEE
Q 007234 90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVS-------------AISFAT--HGSCIYSAGA----------DGMVCEI 144 (612)
Q Consensus 90 ~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~-------------~l~~sp--~~~~l~s~s~----------dg~v~iw 144 (612)
++++.||.+.-.|..+|+..+.+.. .+.|. .+.-.| .+..++.++. +|.|+-+
T Consensus 264 ~~~T~Dg~LiALDA~TGk~~W~fg~--~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~ 341 (764)
T TIGR03074 264 ILPTSDARLIALDADTGKLCEDFGN--NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAF 341 (764)
T ss_pred EEecCCCeEEEEECCCCCEEEEecC--CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEE
Confidence 9999999999999999999877632 12110 011112 1335666642 6889999
Q ss_pred ECCCCceeEEEecCC---------C--------Ce-eEEEECCCCCEEEEeC--------------------CeEEEEEc
Q 007234 145 DPLTGSLLGKFRAST---------K--------GI-SCMAVSSDGKMLATAA--------------------GQLKTFNC 186 (612)
Q Consensus 145 d~~~~~~~~~~~~~~---------~--------~v-~~l~~spdg~~l~~~~--------------------g~i~lwd~ 186 (612)
|.++|+.+-.+.... + .+ ...+++|+..+++.+. +.|.-.|.
T Consensus 342 Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~ 421 (764)
T TIGR03074 342 DVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDA 421 (764)
T ss_pred ECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeC
Confidence 999999887765210 0 11 2344555444444321 35667788
Q ss_pred CCCeeEEEEecCCCCE---------EEEEEee-CCc---EEEEEEcCCCeEEEEEcCCCccc
Q 007234 187 SDHKKMQKFSGHPGAV---------RFMTFSD-NGK---YVLSSAVGERYIALWRTDGVKKQ 235 (612)
Q Consensus 187 ~~~~~~~~~~~h~~~v---------~~l~~sp-~~~---~l~s~s~~d~~i~vwd~~~~~~~ 235 (612)
+||+..-.++.....+ .-+.+.. +|+ .++.++ .+|.+.+.|-++++..
T Consensus 422 ~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~-K~G~~~vlDr~tG~~l 482 (764)
T TIGR03074 422 TTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPT-KQGQIYVLDRRTGEPI 482 (764)
T ss_pred CCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEEC-CCCEEEEEECCCCCEE
Confidence 8998877665422111 1122332 553 555554 8999999999999755
No 390
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.39 E-value=0.29 Score=53.43 Aligned_cols=173 Identities=13% Similarity=0.105 Sum_probs=92.0
Q ss_pred EEEcCCCCEEEEEe------CCC--cEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccc
Q 007234 11 TSFSPALDYFAICS------GDA--RIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (612)
Q Consensus 11 ~~fspdg~~las~s------~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (612)
.++||||+.+|..- .|+ .|.+++.. +.......+ .......|+++ | ...|+..+.
T Consensus 355 paiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g--~~~t~PsWspD---G-------~~lw~v~dg---- 417 (591)
T PRK13616 355 AALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEG--HSLTRPSWSLD---A-------DAVWVVVDG---- 417 (591)
T ss_pred ceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecC--CCCCCceECCC---C-------CceEEEecC----
Confidence 38999999888665 243 45555652 332222222 12444555544 1 122332221
Q ss_pred ccCCcEEEEE--ECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEE---EECCCCce-e---E
Q 007234 83 KLGSSLLVLG--TGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCE---IDPLTGSL-L---G 153 (612)
Q Consensus 83 ~~~~~~l~~g--s~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~i---wd~~~~~~-~---~ 153 (612)
.....+. ...+.+.+.++..+.... .....|..+.|||||..++... ++.|++ -....|.. + .
T Consensus 418 ---~~~~~v~~~~~~gql~~~~vd~ge~~~----~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~ 489 (591)
T PRK13616 418 ---NTVVRVIRDPATGQLARTPVDASAVAS----RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPR 489 (591)
T ss_pred ---cceEEEeccCCCceEEEEeccCchhhh----ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccE
Confidence 1122222 234556666776665532 2346799999999999877765 577777 44344541 1 1
Q ss_pred EEec-CCCCeeEEEECCCCCEEEEeC-C--eEEEEEcCCCeeEEEEec--CCCCEEEEEEee
Q 007234 154 KFRA-STKGISCMAVSSDGKMLATAA-G--QLKTFNCSDHKKMQKFSG--HPGAVRFMTFSD 209 (612)
Q Consensus 154 ~~~~-~~~~v~~l~~spdg~~l~~~~-g--~i~lwd~~~~~~~~~~~~--h~~~v~~l~~sp 209 (612)
.+.. ....+.++.|.+++.+++... + .++..++.... ...+.+ ...++..++-++
T Consensus 490 ~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~-~~~~~~~n~~~~v~~vaa~~ 550 (591)
T PRK13616 490 EVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSN-SDALPSRNLSAPVVAVAASP 550 (591)
T ss_pred EeecccCCccccceEecCCEEEEEecCCCCceEEEecCCcc-ccccCCCCccCceEEEecCC
Confidence 1222 223468899999998765444 3 34444544322 112233 245676776665
No 391
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.14 E-value=1.2 Score=45.56 Aligned_cols=193 Identities=11% Similarity=0.061 Sum_probs=95.4
Q ss_pred CcEEEEEE-CCCcEEEEEcCCC----eEEEEecc--CCC----CCeEEEEEecCCCEEEEEec------CCcEEEEECCC
Q 007234 86 SSLLVLGT-GGGDVLALAVSAG----QLKWRLSD--CHP----GGVSAISFATHGSCIYSAGA------DGMVCEIDPLT 148 (612)
Q Consensus 86 ~~~l~~gs-~~g~I~vwd~~~~----~~~~~~~~--~h~----~~V~~l~~sp~~~~l~s~s~------dg~v~iwd~~~ 148 (612)
.++|++.+ .++.|+|+|+.+. +..+.+.. -+. +.-..+..-|+|+.++++-. -|-+.+.|-++
T Consensus 87 Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~t 166 (461)
T PF05694_consen 87 RRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGET 166 (461)
T ss_dssp S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT
T ss_pred CCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCcc
Confidence 44555555 7788999999853 22322211 011 22334445578888888632 24688889888
Q ss_pred CceeEEEecCCC---CeeEEEECCCCCEEEEeC----------------------CeEEEEEcCCCeeEEEEecCC--CC
Q 007234 149 GSLLGKFRASTK---GISCMAVSSDGKMLATAA----------------------GQLKTFNCSDHKKMQKFSGHP--GA 201 (612)
Q Consensus 149 ~~~~~~~~~~~~---~v~~l~~spdg~~l~~~~----------------------g~i~lwd~~~~~~~~~~~~h~--~~ 201 (612)
.+....+..... .-+..-|.|..+.+++.. .++.+||+.+.+.++++.--. ..
T Consensus 167 f~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~ 246 (461)
T PF05694_consen 167 FEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQM 246 (461)
T ss_dssp --EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEE
T ss_pred ccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCc
Confidence 888887765332 345677888888888864 269999999999999986432 23
Q ss_pred EEEEEEe--eCCcEEEEEEcCCCeEEEEEc-CCCccccceeeEeecCC-----------------ceeEEeEEecCCccC
Q 007234 202 VRFMTFS--DNGKYVLSSAVGERYIALWRT-DGVKKQSASCVLAMEHP-----------------AVFMDCRCIDNGGVD 261 (612)
Q Consensus 202 v~~l~~s--p~~~~l~s~s~~d~~i~vwd~-~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~ 261 (612)
...+.|. |+..+=++++.-..+|..|-- ..++-. +..+..+... ...++-+..+
T Consensus 247 pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~-a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iS----- 320 (461)
T PF05694_consen 247 PLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWA-AEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILIS----- 320 (461)
T ss_dssp EEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEE-EEEEEEE--EE--SS---GGGGGG-EE------EEE------
T ss_pred eEEEEecCCCCccceEEEEeccceEEEEEEcCCCCee-eeEEEECCCcccCcccccccccccccCCCceEeEEEc-----
Confidence 5577776 444544444334555655544 333211 2222222211 1223334444
Q ss_pred CCCcEEEEEec-CCcEEEEECCCc
Q 007234 262 DAGLYVLAISE-TGVCYIWYGQNI 284 (612)
Q Consensus 262 ~~~~~l~t~s~-dg~i~iwd~~~~ 284 (612)
.|.++|..++. +|.|+.||+...
T Consensus 321 lDDrfLYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 321 LDDRFLYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp TTS-EEEEEETTTTEEEEEE-SST
T ss_pred cCCCEEEEEcccCCcEEEEecCCC
Confidence 78888888876 899999998654
No 392
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.79 E-value=0.26 Score=45.51 Aligned_cols=91 Identities=20% Similarity=0.283 Sum_probs=63.6
Q ss_pred EEEeeecccccccccCCcEEEEEECCCcEEEEE--cCCCeE-----EEEeccC---CCCCeEEEEEecCCCEEEEEecCC
Q 007234 70 CMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALA--VSAGQL-----KWRLSDC---HPGGVSAISFATHGSCIYSAGADG 139 (612)
Q Consensus 70 ~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd--~~~~~~-----~~~~~~~---h~~~V~~l~~sp~~~~l~s~s~dg 139 (612)
.+.|.... ..+.++-+.+-+|.-|| ..+|.. +..+.+. ..-.--+++...+|++.+++-..+
T Consensus 162 gl~Wd~d~--------K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~ 233 (310)
T KOG4499|consen 162 GLAWDSDA--------KKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGG 233 (310)
T ss_pred cccccccC--------cEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCc
Confidence 46677443 45677788888897787 666643 2222110 111123455566788888888888
Q ss_pred cEEEEECCCCceeEEEecCCCCeeEEEEC
Q 007234 140 MVCEIDPLTGSLLGKFRASTKGISCMAVS 168 (612)
Q Consensus 140 ~v~iwd~~~~~~~~~~~~~~~~v~~l~~s 168 (612)
+|...|..+|+.+.+++-....++|++|-
T Consensus 234 ~V~~~dp~tGK~L~eiklPt~qitsccFg 262 (310)
T KOG4499|consen 234 TVQKVDPTTGKILLEIKLPTPQITSCCFG 262 (310)
T ss_pred EEEEECCCCCcEEEEEEcCCCceEEEEec
Confidence 99999999999999999888899999996
No 393
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.77 E-value=0.4 Score=51.98 Aligned_cols=98 Identities=16% Similarity=0.209 Sum_probs=71.8
Q ss_pred EEEEECCCc-EEEEEcCCCeEEEEeccCCCCCeEEEEEe--cCCCEEEEEecCCcEEEEECC---------CCceeEEE-
Q 007234 89 LVLGTGGGD-VLALAVSAGQLKWRLSDCHPGGVSAISFA--THGSCIYSAGADGMVCEIDPL---------TGSLLGKF- 155 (612)
Q Consensus 89 l~~gs~~g~-I~vwd~~~~~~~~~~~~~h~~~V~~l~~s--p~~~~l~s~s~dg~v~iwd~~---------~~~~~~~~- 155 (612)
+++...+++ +.|||...+.......-...+.|.++.|. |+|+.+++.|..+.|.++--. +..+++.+
T Consensus 43 ~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~ 122 (631)
T PF12234_consen 43 IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKID 122 (631)
T ss_pred EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEE
Confidence 444455555 99999999886544332457899999995 589999999999999998532 11233433
Q ss_pred -ecCC-CCeeEEEECCCCCEEEEeCCeEEEEEc
Q 007234 156 -RAST-KGISCMAVSSDGKMLATAAGQLKTFNC 186 (612)
Q Consensus 156 -~~~~-~~v~~l~~spdg~~l~~~~g~i~lwd~ 186 (612)
..+. .+|....|.++|.+++.+++.+.|+|-
T Consensus 123 i~~~T~h~Igds~Wl~~G~LvV~sGNqlfv~dk 155 (631)
T PF12234_consen 123 ISSHTPHPIGDSIWLKDGTLVVGSGNQLFVFDK 155 (631)
T ss_pred eecCCCCCccceeEecCCeEEEEeCCEEEEECC
Confidence 3333 588999999999888888899999974
No 394
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.64 E-value=1.7 Score=41.90 Aligned_cols=156 Identities=11% Similarity=0.039 Sum_probs=99.8
Q ss_pred eeEEEeeecccccccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECC
Q 007234 68 YTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL 147 (612)
Q Consensus 68 ~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~ 147 (612)
.+.+.|++. .+.+++..+...-.|+=-.+|+.+.++.-..-...-++.|..+|++.++--.++.+.++.+.
T Consensus 88 vS~LTynp~---------~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd 158 (316)
T COG3204 88 VSSLTYNPD---------TRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVD 158 (316)
T ss_pred ccceeeCCC---------cceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEc
Confidence 556667665 56677777777777777788888877654334456678888888877777788888888776
Q ss_pred CCceeEEE----------ecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCe--e-EEEEecC-------CCCEEEE
Q 007234 148 TGSLLGKF----------RASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHK--K-MQKFSGH-------PGAVRFM 205 (612)
Q Consensus 148 ~~~~~~~~----------~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~--~-~~~~~~h-------~~~v~~l 205 (612)
.+..+..+ .....+...++|+|..+.+..+- .-+.||.+.... . +.....+ -..|.++
T Consensus 159 ~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl 238 (316)
T COG3204 159 ADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGL 238 (316)
T ss_pred CCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccc
Confidence 55222111 11245788999999888888776 545555443222 1 1111111 1346778
Q ss_pred EEeeCCcEEEEEEcCCCeEEEEEcCCC
Q 007234 206 TFSDNGKYVLSSAVGERYIALWRTDGV 232 (612)
Q Consensus 206 ~~sp~~~~l~s~s~~d~~i~vwd~~~~ 232 (612)
.|.+....+++-|.+++.+.-.|....
T Consensus 239 ~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 239 EFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred eecCCCCcEEEEecCCceEEEEecCCC
Confidence 888655555555557888777776554
No 395
>PHA02713 hypothetical protein; Provisional
Probab=95.52 E-value=0.47 Score=51.87 Aligned_cols=141 Identities=8% Similarity=0.057 Sum_probs=73.2
Q ss_pred CcEEEEEECCCc-----EEEEEcCCCeEEEEeccCCC-CCeEEEEEecCCCEEEEEecCC--------------------
Q 007234 86 SSLLVLGTGGGD-----VLALAVSAGQLKWRLSDCHP-GGVSAISFATHGSCIYSAGADG-------------------- 139 (612)
Q Consensus 86 ~~~l~~gs~~g~-----I~vwd~~~~~~~~~~~~~h~-~~V~~l~~sp~~~~l~s~s~dg-------------------- 139 (612)
+.+.++|+.+|. +..||+.+++-...-.-.+. .....+. -+|+..+.||.++
T Consensus 352 g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~ 429 (557)
T PHA02713 352 DTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTH 429 (557)
T ss_pred CEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEE--ECCEEEEEeCCCccccccccccccccccccccc
Confidence 667778877643 88899988754311100011 1111222 2577777776542
Q ss_pred ---cEEEEECCCCcee--EEEecCCCCeeEEEECCCCCEEEEeC--C------eEEEEEcCC-Cee--EEEEecCCCCEE
Q 007234 140 ---MVCEIDPLTGSLL--GKFRASTKGISCMAVSSDGKMLATAA--G------QLKTFNCSD-HKK--MQKFSGHPGAVR 203 (612)
Q Consensus 140 ---~v~iwd~~~~~~~--~~~~~~~~~v~~l~~spdg~~l~~~~--g------~i~lwd~~~-~~~--~~~~~~h~~~v~ 203 (612)
.+..||..+.+-. ..+....... +++. -+|++.+.|+ + .+..||..+ .+- +..++.......
T Consensus 430 ~~~~ve~YDP~td~W~~v~~m~~~r~~~-~~~~-~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~ 507 (557)
T PHA02713 430 SSNKVIRYDTVNNIWETLPNFWTGTIRP-GVVS-HKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALH 507 (557)
T ss_pred ccceEEEECCCCCeEeecCCCCcccccC-cEEE-ECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccce
Confidence 4777887765432 1221111111 2222 2466666665 1 367899887 432 333332222222
Q ss_pred EEEEeeCCcEEEEEEcCCC--eEEEEEcCCCc
Q 007234 204 FMTFSDNGKYVLSSAVGER--YIALWRTDGVK 233 (612)
Q Consensus 204 ~l~~sp~~~~l~s~s~~d~--~i~vwd~~~~~ 233 (612)
... -+|+..+.|| .++ .+..||..+.+
T Consensus 508 ~~~--~~~~iyv~Gg-~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 508 TIL--HDNTIMMLHC-YESYMLQDTFNVYTYE 536 (557)
T ss_pred eEE--ECCEEEEEee-ecceeehhhcCccccc
Confidence 222 2577777776 577 67777777765
No 396
>PHA03098 kelch-like protein; Provisional
Probab=95.37 E-value=0.86 Score=49.78 Aligned_cols=143 Identities=8% Similarity=0.050 Sum_probs=70.0
Q ss_pred CcEEEEEECCC------cEEEEEcCCCeEEEEeccCC--CCCeEEEEEecCCCEEEEEecC-----CcEEEEECCCCcee
Q 007234 86 SSLLVLGTGGG------DVLALAVSAGQLKWRLSDCH--PGGVSAISFATHGSCIYSAGAD-----GMVCEIDPLTGSLL 152 (612)
Q Consensus 86 ~~~l~~gs~~g------~I~vwd~~~~~~~~~~~~~h--~~~V~~l~~sp~~~~l~s~s~d-----g~v~iwd~~~~~~~ 152 (612)
+.++++|+.++ .+..||+.+++.. .+..-. ......+ .-+++.++.||.+ ..+..||..+++-.
T Consensus 295 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~-~~~~~~~~R~~~~~~--~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 371 (534)
T PHA03098 295 NVIYFIGGMNKNNLSVNSVVSYDTKTKSWN-KVPELIYPRKNPGVT--VFNNRIYVIGGIYNSISLNTVESWKPGESKWR 371 (534)
T ss_pred CEEEEECCCcCCCCeeccEEEEeCCCCeee-ECCCCCcccccceEE--EECCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence 55666776543 4788998887653 221111 1111222 2256667777755 35778887765432
Q ss_pred E--EEecCCCCeeEEEECCCCCEEEEeC--------CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCC-
Q 007234 153 G--KFRASTKGISCMAVSSDGKMLATAA--------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE- 221 (612)
Q Consensus 153 ~--~~~~~~~~v~~l~~spdg~~l~~~~--------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d- 221 (612)
. .+....... +++. -++++.+.|+ +.+..||..+++-...-..........+...++..++.||...
T Consensus 372 ~~~~lp~~r~~~-~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~ 449 (534)
T PHA03098 372 EEPPLIFPRYNP-CVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYI 449 (534)
T ss_pred eCCCcCcCCccc-eEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCC
Confidence 1 111111111 2222 2566666665 2588999887653221110001101112234566555555211
Q ss_pred ------CeEEEEEcCCCc
Q 007234 222 ------RYIALWRTDGVK 233 (612)
Q Consensus 222 ------~~i~vwd~~~~~ 233 (612)
..+.+||..+.+
T Consensus 450 ~~~~~~~~v~~yd~~~~~ 467 (534)
T PHA03098 450 DNIKVYNIVESYNPVTNK 467 (534)
T ss_pred CCCcccceEEEecCCCCc
Confidence 237788877664
No 397
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.31 E-value=0.056 Score=49.71 Aligned_cols=61 Identities=15% Similarity=0.122 Sum_probs=41.7
Q ss_pred CcEEEEEECCCcEEEEEcCCCeEEEEeccCCC-CCeEEEEEecCCCEEEEE--ecCCcEEEEECC
Q 007234 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHP-GGVSAISFATHGSCIYSA--GADGMVCEIDPL 147 (612)
Q Consensus 86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~-~~V~~l~~sp~~~~l~s~--s~dg~v~iwd~~ 147 (612)
+.+..++..+|.|+.|++.-++.+... ..|+ .++..+..+..++.+..+ |.|..++.|++.
T Consensus 114 ~~~~c~~~~dg~ir~~n~~p~k~~g~~-g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 114 SSLGCVGAQDGRIRACNIKPNKVLGYV-GQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred cceeEEeccCCceeeeccccCceeeee-ccccCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence 457889999999999999988887555 3466 455555555555555555 566666666654
No 398
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.30 E-value=0.07 Score=59.35 Aligned_cols=100 Identities=17% Similarity=0.210 Sum_probs=71.6
Q ss_pred CCCEEEEEecCCcEEEEECCCC-ceeEEEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEE
Q 007234 128 HGSCIYSAGADGMVCEIDPLTG-SLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRF 204 (612)
Q Consensus 128 ~~~~l~s~s~dg~v~iwd~~~~-~~~~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~ 204 (612)
.+-.++.|+..|.|-..|+... .+...=....++|++++|+.+|+.++.|- |.|.+||+..++.++.+..|..+.++
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~ 177 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG 177 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence 3446888888899988887543 11111122346999999999999999987 89999999999999999888888777
Q ss_pred EEEe---eCCcEEEEEEcCCCeEEEEEcC
Q 007234 205 MTFS---DNGKYVLSSAVGERYIALWRTD 230 (612)
Q Consensus 205 l~~s---p~~~~l~s~s~~d~~i~vwd~~ 230 (612)
+-+. .++..++++ ...|. +|.+.
T Consensus 178 vi~v~~t~~nS~llt~-D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 178 VIFVGRTSQNSKLLTS-DTGGS--FWKLV 203 (1206)
T ss_pred EEEEEEeCCCcEEEEc-cCCCc--eEEEE
Confidence 6543 445555554 34554 67653
No 399
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.15 E-value=3.8 Score=40.64 Aligned_cols=153 Identities=16% Similarity=0.183 Sum_probs=76.3
Q ss_pred CCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEEEECCCCCEEEEeC-CeEEEEE-cCCCeeE
Q 007234 115 CHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-GQLKTFN-CSDHKKM 192 (612)
Q Consensus 115 ~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~-g~i~lwd-~~~~~~~ 192 (612)
.-.+.+..+..+++|+++++++.-....-||.-...-...-+.....|.++.|.|++.+.+.+. |.|+.=+ ....+..
T Consensus 142 ~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~w 221 (302)
T PF14870_consen 142 ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGETW 221 (302)
T ss_dssp S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEEE
T ss_pred CCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEeCCcEEEEccCCCCcccc
Confidence 3456788898999999888876555556787432211122222456899999999998877666 8888877 2222222
Q ss_pred EE--Ee--cCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEee-cCCceeEEeEEecCCccCCCCcEE
Q 007234 193 QK--FS--GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAM-EHPAVFMDCRCIDNGGVDDAGLYV 267 (612)
Q Consensus 193 ~~--~~--~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l 267 (612)
.. .+ ...-.+..++|.+++...++++ .|.+ +...+.++.= ...... .-+.....+.++. + ..-
T Consensus 222 ~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg--~G~l-~~S~DgGktW--~~~~~~~~~~~n~~~i~f~~-----~--~~g 289 (302)
T PF14870_consen 222 SEPIIPIKTNGYGILDLAYRPPNEIWAVGG--SGTL-LVSTDGGKTW--QKDRVGENVPSNLYRIVFVN-----P--DKG 289 (302)
T ss_dssp ---B-TTSS--S-EEEEEESSSS-EEEEES--TT-E-EEESSTTSS---EE-GGGTTSSS---EEEEEE-----T--TEE
T ss_pred ccccCCcccCceeeEEEEecCCCCEEEEeC--CccE-EEeCCCCccc--eECccccCCCCceEEEEEcC-----C--Cce
Confidence 11 11 1122378899999887777654 5654 3455555421 111111 1244555555554 3 445
Q ss_pred EEEecCCcEEEE
Q 007234 268 LAISETGVCYIW 279 (612)
Q Consensus 268 ~t~s~dg~i~iw 279 (612)
++.+.+|.|.-|
T Consensus 290 f~lG~~G~ll~~ 301 (302)
T PF14870_consen 290 FVLGQDGVLLRY 301 (302)
T ss_dssp EEE-STTEEEEE
T ss_pred EEECCCcEEEEe
Confidence 566778877655
No 400
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.08 E-value=0.051 Score=36.98 Aligned_cols=34 Identities=21% Similarity=0.392 Sum_probs=28.4
Q ss_pred CcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcE
Q 007234 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQV 39 (612)
Q Consensus 3 s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~ 39 (612)
.++|. +++|+|...+||.|..+|.|.|+.+ +++.
T Consensus 11 ~~~v~--~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVS--CMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEE--EEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 35665 5599999999999999999999998 5554
No 401
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.08 E-value=0.068 Score=49.16 Aligned_cols=102 Identities=18% Similarity=0.165 Sum_probs=62.0
Q ss_pred CcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCe-EEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCC-CCee
Q 007234 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGV-SAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST-KGIS 163 (612)
Q Consensus 86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V-~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~-~~v~ 163 (612)
+.-+++|+.+|.|.+|+...-.........-...| ..+.--.++.+.++++.||.|+.|++..++.+...-.|. .++.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e 149 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE 149 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence 56799999999999999873211111111111222 223223355678889999999999999888877766666 3444
Q ss_pred EEEECCCCCEEEEe--C--CeEEEEEcC
Q 007234 164 CMAVSSDGKMLATA--A--GQLKTFNCS 187 (612)
Q Consensus 164 ~l~~spdg~~l~~~--~--g~i~lwd~~ 187 (612)
....+..++.++.+ + ..++.|++.
T Consensus 150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 150 ELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred eeEEecCCceEEeeccccchhhhhcchh
Confidence 44444444555544 2 355566554
No 402
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.95 E-value=4.3 Score=40.24 Aligned_cols=136 Identities=15% Similarity=0.190 Sum_probs=73.7
Q ss_pred CcEEEEEECCCc-EEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEE-CCCCceeEE----EecCC
Q 007234 86 SSLLVLGTGGGD-VLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEID-PLTGSLLGK----FRAST 159 (612)
Q Consensus 86 ~~~l~~gs~~g~-I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd-~~~~~~~~~----~~~~~ 159 (612)
+.+++++ ..|. ..-||.-...-...- ......|..+.|.|++...+.+ ..|.|+.=+ ....+.-.. +....
T Consensus 156 G~~vavs-~~G~~~~s~~~G~~~w~~~~-r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~ 232 (302)
T PF14870_consen 156 GRYVAVS-SRGNFYSSWDPGQTTWQPHN-RNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNG 232 (302)
T ss_dssp S-EEEEE-TTSSEEEEE-TT-SS-EEEE---SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--
T ss_pred CcEEEEE-CcccEEEEecCCCccceEEc-cCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCc
Confidence 5555555 5555 567887543222111 2356889999999998765544 888888877 222222111 11122
Q ss_pred CCeeEEEECCCCCEEEEeC-CeEEEEEcCCCeeEEEEe---cCCCCEEEEEEeeCCcEEEEEEcCCCeEEEE
Q 007234 160 KGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFS---GHPGAVRFMTFSDNGKYVLSSAVGERYIALW 227 (612)
Q Consensus 160 ~~v~~l~~spdg~~l~~~~-g~i~lwd~~~~~~~~~~~---~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vw 227 (612)
..+..++|.+++...++|+ |.+ +...+.|+.-.+-+ .-....+.+.|.++.+-++.+ .+|.+.-|
T Consensus 233 ~~~ld~a~~~~~~~wa~gg~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG--~~G~ll~~ 301 (302)
T PF14870_consen 233 YGILDLAYRPPNEIWAVGGSGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLG--QDGVLLRY 301 (302)
T ss_dssp S-EEEEEESSSS-EEEEESTT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE---STTEEEEE
T ss_pred eeeEEEEecCCCCEEEEeCCccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEEEC--CCcEEEEe
Confidence 3588999999999999888 544 45566666544443 234568899998877766664 58887655
No 403
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=94.93 E-value=4 Score=39.77 Aligned_cols=210 Identities=14% Similarity=0.201 Sum_probs=112.5
Q ss_pred cceeEEEEcCCCCEEEEEeCCCcEEEEECC------CC-cEEEEeecc-----CCccccccccccccccccccceeEEEe
Q 007234 6 IRDILTSFSPALDYFAICSGDARIKIWDTL------KG-QVQTEFADI-----ASTETTSLYGNRLEREHLSVDYTCMKW 73 (612)
Q Consensus 6 V~~l~~~fspdg~~las~s~dg~i~iwd~~------~~-~~~~~~~~~-----~~~~~~~~~s~~~~~~~~~~~~~~~~w 73 (612)
|+.+-++|+|.+.+-++....+...+||.. .. .++-++... ....+.++|+.. . .|
T Consensus 23 ~N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~---~---------~F 90 (336)
T TIGR03118 23 RNAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGS---D---------TF 90 (336)
T ss_pred cccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCC---C---------ce
Confidence 344566999999877777778899999986 11 122222211 112333333322 0 00
Q ss_pred eecccccccccCCcEEEEEECCCcEEEEEcCCCeE-----EEEeccCCCCCe-EEEEEec--CCCEEEEEe-cCCcEEEE
Q 007234 74 LSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQL-----KWRLSDCHPGGV-SAISFAT--HGSCIYSAG-ADGMVCEI 144 (612)
Q Consensus 74 ~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~-----~~~~~~~h~~~V-~~l~~sp--~~~~l~s~s-~dg~v~iw 144 (612)
..... .+.....++.++.+|+|.-|...-+.. ...+.....+.| ..+++.. .+.+|+.+. ..++|.++
T Consensus 91 -~vt~~--g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVF 167 (336)
T TIGR03118 91 -VVSGE--GITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVF 167 (336)
T ss_pred -EEcCC--CcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEe
Confidence 00000 001145689999999999999754333 112212222344 3556553 356677665 57889999
Q ss_pred ECCCCceeEE---EecCC-----C-----------CeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEe--cCCCC
Q 007234 145 DPLTGSLLGK---FRAST-----K-----------GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS--GHPGA 201 (612)
Q Consensus 145 d~~~~~~~~~---~~~~~-----~-----------~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~--~h~~~ 201 (612)
|-. .+++.. |.... . -|+...-.++++.=+.|. |-|-+||+ .++.++++. +.-..
T Consensus 168 d~~-f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNa 245 (336)
T TIGR03118 168 KGS-FRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNA 245 (336)
T ss_pred cCc-cccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccC
Confidence 843 222111 11110 0 111122223332222222 78999997 567777773 22234
Q ss_pred EEEEEEee------CCcEEEEEEcCCCeEEEEEcCCCc
Q 007234 202 VRFMTFSD------NGKYVLSSAVGERYIALWRTDGVK 233 (612)
Q Consensus 202 v~~l~~sp------~~~~l~s~s~~d~~i~vwd~~~~~ 233 (612)
-+.|+..| .|. |+.+-..||+|..||..++.
T Consensus 246 PWG~a~APa~FG~~sg~-lLVGNFGDG~InaFD~~sG~ 282 (336)
T TIGR03118 246 PWGLAIAPESFGSLSGA-LLVGNFGDGTINAYDPQSGA 282 (336)
T ss_pred CceeeeChhhhCCCCCC-eEEeecCCceeEEecCCCCc
Confidence 45666655 344 45566789999999998776
No 404
>PHA03098 kelch-like protein; Provisional
Probab=94.91 E-value=1.3 Score=48.36 Aligned_cols=143 Identities=13% Similarity=0.056 Sum_probs=68.8
Q ss_pred CcEEEEEECCC-----cEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecC------CcEEEEECCCCceeEE
Q 007234 86 SSLLVLGTGGG-----DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD------GMVCEIDPLTGSLLGK 154 (612)
Q Consensus 86 ~~~l~~gs~~g-----~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~d------g~v~iwd~~~~~~~~~ 154 (612)
+.+++.|+.++ ++..||+.+++-...-...+...-.+++ .-+++..+.||.+ ..+..||..+++-...
T Consensus 343 ~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~ 421 (534)
T PHA03098 343 NRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKG 421 (534)
T ss_pred CEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeec
Confidence 66777777653 3788998876543111001111111222 2256666666632 4588899876543221
Q ss_pred --EecCCCCeeEEEECCCCCEEEEeC-C---------eEEEEEcCCCeeEEE--EecCCCCEEEEEEeeCCcEEEEEEcC
Q 007234 155 --FRASTKGISCMAVSSDGKMLATAA-G---------QLKTFNCSDHKKMQK--FSGHPGAVRFMTFSDNGKYVLSSAVG 220 (612)
Q Consensus 155 --~~~~~~~v~~l~~spdg~~l~~~~-g---------~i~lwd~~~~~~~~~--~~~h~~~v~~l~~sp~~~~l~s~s~~ 220 (612)
+...... .+++ ..++++.+.|+ . .+.+||..+++-... +....... ++ ..-+++.++.+|..
T Consensus 422 ~~~p~~r~~-~~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~-~~-~~~~~~iyv~GG~~ 497 (534)
T PHA03098 422 SPLPISHYG-GCAI-YHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINA-SL-CIFNNKIYVVGGDK 497 (534)
T ss_pred CCCCccccC-ceEE-EECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccc-eE-EEECCEEEEEcCCc
Confidence 1111111 1222 23566666665 1 388899887653221 11111111 11 12356666666522
Q ss_pred ----CCeEEEEEcCCCc
Q 007234 221 ----ERYIALWRTDGVK 233 (612)
Q Consensus 221 ----d~~i~vwd~~~~~ 233 (612)
.+.+.+||..+..
T Consensus 498 ~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 498 YEYYINEIEVYDDKTNT 514 (534)
T ss_pred CCcccceeEEEeCCCCE
Confidence 1357777766653
No 405
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=94.88 E-value=2 Score=39.75 Aligned_cols=137 Identities=13% Similarity=0.210 Sum_probs=80.7
Q ss_pred cEEEEEECCCcEEEEEcCCCe--EEEEeccCCCCCeEEEEEecCCCEEEEEecC---C---cEEEE---ECC--CCceeE
Q 007234 87 SLLVLGTGGGDVLALAVSAGQ--LKWRLSDCHPGGVSAISFATHGSCIYSAGAD---G---MVCEI---DPL--TGSLLG 153 (612)
Q Consensus 87 ~~l~~gs~~g~I~vwd~~~~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~d---g---~v~iw---d~~--~~~~~~ 153 (612)
+.++++...+.|.+|++.+.. ...++. .-+.|..+.++..|++++|-=.+ . .+|+| +.. ..++++
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~--Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~ 106 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFS--TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVR 106 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEc--chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEE
Confidence 567777888889999998433 344442 45889999999999999986322 2 55664 222 112222
Q ss_pred -EEec---------------------CCCCeeEEEECC-CCCEEEEeCCeEEEEEcCCCee-E-----EEEe----c-CC
Q 007234 154 -KFRA---------------------STKGISCMAVSS-DGKMLATAAGQLKTFNCSDHKK-M-----QKFS----G-HP 199 (612)
Q Consensus 154 -~~~~---------------------~~~~v~~l~~sp-dg~~l~~~~g~i~lwd~~~~~~-~-----~~~~----~-h~ 199 (612)
.+-+ ...++.+++..| .|++++...+.+.+|.++.... . ..|. . |.
T Consensus 107 vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~ 186 (215)
T PF14761_consen 107 VRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQTIQSEKFSFLDFERSLIDHID 186 (215)
T ss_pred EEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEEEEecccccEEechhhhhheec
Confidence 1111 123667888888 5666655558999998754432 1 1111 1 11
Q ss_pred C-CEEEEEEeeCCcEEEEEEcCCCeEEEEEc
Q 007234 200 G-AVRFMTFSDNGKYVLSSAVGERYIALWRT 229 (612)
Q Consensus 200 ~-~v~~l~~sp~~~~l~s~s~~d~~i~vwd~ 229 (612)
+ ....++|. +.|++..+ +..+++..+
T Consensus 187 ~~~p~~v~ic--~~yiA~~s--~~ev~Vlkl 213 (215)
T PF14761_consen 187 NFKPTQVAIC--EGYIAVMS--DLEVLVLKL 213 (215)
T ss_pred CceEEEEEEE--eeEEEEec--CCEEEEEEE
Confidence 1 13445554 45777664 566777654
No 406
>PHA02790 Kelch-like protein; Provisional
Probab=94.79 E-value=2.2 Score=45.84 Aligned_cols=139 Identities=8% Similarity=-0.075 Sum_probs=66.3
Q ss_pred CcEEEEEECCC--cEEEEEcCCCeEEEEeccCCCCCeEE-EEEecCCCEEEEEecCC---cEEEEECCCCceeEE--Eec
Q 007234 86 SSLLVLGTGGG--DVLALAVSAGQLKWRLSDCHPGGVSA-ISFATHGSCIYSAGADG---MVCEIDPLTGSLLGK--FRA 157 (612)
Q Consensus 86 ~~~l~~gs~~g--~I~vwd~~~~~~~~~~~~~h~~~V~~-l~~sp~~~~l~s~s~dg---~v~iwd~~~~~~~~~--~~~ 157 (612)
+.+.++|+.++ .+..||+.+++-.. ... -..+... ....-+|+..+.||.++ .+..||..+.+-... +..
T Consensus 319 ~~iYviGG~~~~~sve~ydp~~n~W~~-~~~-l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~ 396 (480)
T PHA02790 319 NKLYVVGGLPNPTSVERWFHGDAAWVN-MPS-LLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYY 396 (480)
T ss_pred CEEEEECCcCCCCceEEEECCCCeEEE-CCC-CCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCC
Confidence 56667777543 48889987765431 111 1111111 11222576677777553 477888776543221 111
Q ss_pred CCCCeeEEEECCCCCEEEEeCCeEEEEEcCCCeeEE--EEecCCCCEEEEEEeeCCcEEEEEEcCC-----CeEEEEEcC
Q 007234 158 STKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQ--KFSGHPGAVRFMTFSDNGKYVLSSAVGE-----RYIALWRTD 230 (612)
Q Consensus 158 ~~~~v~~l~~spdg~~l~~~~g~i~lwd~~~~~~~~--~~~~h~~~v~~l~~sp~~~~l~s~s~~d-----~~i~vwd~~ 230 (612)
..... +++ .-+|++.+.| |.+.+||.++++-.. .+....... +++ .-+|+..+.|| .+ ..+.+||..
T Consensus 397 ~r~~~-~~~-~~~~~IYv~G-G~~e~ydp~~~~W~~~~~m~~~r~~~-~~~-v~~~~IYviGG-~~~~~~~~~ve~Yd~~ 470 (480)
T PHA02790 397 PHYKS-CAL-VFGRRLFLVG-RNAEFYCESSNTWTLIDDPIYPRDNP-ELI-IVDNKLLLIGG-FYRGSYIDTIEVYNNR 470 (480)
T ss_pred ccccc-eEE-EECCEEEEEC-CceEEecCCCCcEeEcCCCCCCcccc-EEE-EECCEEEEECC-cCCCcccceEEEEECC
Confidence 11111 222 2245444444 567789988765432 121111111 222 23566666665 23 245566655
Q ss_pred CC
Q 007234 231 GV 232 (612)
Q Consensus 231 ~~ 232 (612)
+.
T Consensus 471 ~~ 472 (480)
T PHA02790 471 TY 472 (480)
T ss_pred CC
Confidence 54
No 407
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.78 E-value=1.5 Score=45.30 Aligned_cols=96 Identities=17% Similarity=0.168 Sum_probs=50.5
Q ss_pred CeEEEEEecCCCEEEEEecCCcEEEEECCCC-----cee---EEEecC----CCCeeEEEECCCCCEEEEeC--------
Q 007234 119 GVSAISFATHGSCIYSAGADGMVCEIDPLTG-----SLL---GKFRAS----TKGISCMAVSSDGKMLATAA-------- 178 (612)
Q Consensus 119 ~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~-----~~~---~~~~~~----~~~v~~l~~spdg~~l~~~~-------- 178 (612)
...++++.++| |++++.....++.|.... +.. ..+... ......++|.|||.+.++-+
T Consensus 73 ~p~Gi~~~~~G--lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~ 150 (367)
T TIGR02604 73 MVTGLAVAVGG--VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVT 150 (367)
T ss_pred CccceeEecCC--EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceec
Confidence 45778888777 444444433333344211 111 112221 23467899999988766433
Q ss_pred -------------CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEE
Q 007234 179 -------------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSS 217 (612)
Q Consensus 179 -------------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~ 217 (612)
|.|.-+|..+++....-.++. ....++|+|+|+++++-
T Consensus 151 ~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~r-np~Gl~~d~~G~l~~td 201 (367)
T TIGR02604 151 RPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQ-NPYGHSVDSWGDVFFCD 201 (367)
T ss_pred cCCCccCcccccCceEEEEecCCCeEEEEecCcC-CCccceECCCCCEEEEc
Confidence 234455555444322223333 24678999999876653
No 408
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=94.55 E-value=4.9 Score=38.97 Aligned_cols=139 Identities=13% Similarity=0.108 Sum_probs=76.3
Q ss_pred EEEEcCCCCEEEEEe--C-CCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCC
Q 007234 10 LTSFSPALDYFAICS--G-DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGS 86 (612)
Q Consensus 10 ~~~fspdg~~las~s--~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 86 (612)
..+.|+||+.+|... . ...+.++... ....... .........|..+ +
T Consensus 28 s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~g~~l~~PS~d~~---------------------------g 77 (253)
T PF10647_consen 28 SPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-TGGSLTRPSWDPD---------------------------G 77 (253)
T ss_pred ceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-cCCccccccccCC---------------------------C
Confidence 449999999887766 3 3345555443 3222221 1112222223222 4
Q ss_pred cEEEEEECCCcEEEEE-cCCCeEEE-Eec-cCCCCCeEEEEEecCCCEEEEEe---cCCcEEEEECC---CC------ce
Q 007234 87 SLLVLGTGGGDVLALA-VSAGQLKW-RLS-DCHPGGVSAISFATHGSCIYSAG---ADGMVCEIDPL---TG------SL 151 (612)
Q Consensus 87 ~~l~~gs~~g~I~vwd-~~~~~~~~-~~~-~~h~~~V~~l~~sp~~~~l~s~s---~dg~v~iwd~~---~~------~~ 151 (612)
...++...+....++. ..++.... .+. ..-...|+++.+||||..++... .++.|.+--+. .+ ..
T Consensus 78 ~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~ 157 (253)
T PF10647_consen 78 WVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGP 157 (253)
T ss_pred CEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccc
Confidence 5555555555555553 33333221 111 11112899999999999877655 35667666443 22 11
Q ss_pred eEEEecCCCCeeEEEECCCCCEEEEeC
Q 007234 152 LGKFRASTKGISCMAVSSDGKMLATAA 178 (612)
Q Consensus 152 ~~~~~~~~~~v~~l~~spdg~~l~~~~ 178 (612)
..........+..+.|.+++.+++.+.
T Consensus 158 ~~~~~~~~~~v~~v~W~~~~~L~V~~~ 184 (253)
T PF10647_consen 158 RRVAPPLLSDVTDVAWSDDSTLVVLGR 184 (253)
T ss_pred eEecccccCcceeeeecCCCEEEEEeC
Confidence 122222345789999999999888776
No 409
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.50 E-value=0.038 Score=60.11 Aligned_cols=117 Identities=15% Similarity=0.226 Sum_probs=74.5
Q ss_pred eeEEEeeecccccccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEE-----------EecCCCEEEEEe
Q 007234 68 YTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAIS-----------FATHGSCIYSAG 136 (612)
Q Consensus 68 ~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~-----------~sp~~~~l~s~s 136 (612)
..-+.|.+.-.. ..++..+..+|+|++.++.+... .+..+|...+++++ .+|||..|+.++
T Consensus 183 ~~~V~wcp~~~~------~~~ic~~~~~~~i~lL~~~ra~~--~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~ 254 (1283)
T KOG1916|consen 183 PQLVSWCPIAVN------KVYICYGLKGGEIRLLNINRALR--SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAI 254 (1283)
T ss_pred cceeeecccccc------cceeeeccCCCceeEeeechHHH--HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEee
Confidence 356677776543 55677788888888877765543 34455776665543 589999999999
Q ss_pred cCCcEEEEECC-----CCceeEEEecCCC-CeeEEEECCCC---------CEEEEeC---CeEEEEEcCCCeeE
Q 007234 137 ADGMVCEIDPL-----TGSLLGKFRASTK-GISCMAVSSDG---------KMLATAA---GQLKTFNCSDHKKM 192 (612)
Q Consensus 137 ~dg~v~iwd~~-----~~~~~~~~~~~~~-~v~~l~~spdg---------~~l~~~~---g~i~lwd~~~~~~~ 192 (612)
.||.++.|.+. ..+++..++.|.+ +-.|.-++.+. .+++++. ..+++|.....+|+
T Consensus 255 ~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 255 SDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred cCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 99998888653 3356667777763 33333344322 2344444 46788876655554
No 410
>PHA02790 Kelch-like protein; Provisional
Probab=94.38 E-value=3.2 Score=44.53 Aligned_cols=180 Identities=6% Similarity=-0.092 Sum_probs=84.7
Q ss_pred CcEEEEEECCC-----cEEEEEcCCCeEEEEeccCCCCCe-EEEEEecCCCEEEEEecC--CcEEEEECCCCceeE--EE
Q 007234 86 SSLLVLGTGGG-----DVLALAVSAGQLKWRLSDCHPGGV-SAISFATHGSCIYSAGAD--GMVCEIDPLTGSLLG--KF 155 (612)
Q Consensus 86 ~~~l~~gs~~g-----~I~vwd~~~~~~~~~~~~~h~~~V-~~l~~sp~~~~l~s~s~d--g~v~iwd~~~~~~~~--~~ 155 (612)
+.++++|+.++ .+..||+.++.....- .-..... .+++ .-+|...+.||.+ .++..||..+++-.. .+
T Consensus 272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~-~m~~~r~~~~~v-~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l 349 (480)
T PHA02790 272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIP-PMNSPRLYASGV-PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSL 349 (480)
T ss_pred CEEEEEcCCCCCCcCCeEEEEECCCCEEEECC-CCCchhhcceEE-EECCEEEEECCcCCCCceEEEECCCCeEEECCCC
Confidence 55667776543 3778999887643211 1111111 1222 2356666777653 458888876553221 12
Q ss_pred ecCCCCeeEEEECCCCCEEEEeC-----CeEEEEEcCCCeeEEEEecCCCCE-EEEEEeeCCcEEEEEEcCCCeEEEEEc
Q 007234 156 RASTKGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKKMQKFSGHPGAV-RFMTFSDNGKYVLSSAVGERYIALWRT 229 (612)
Q Consensus 156 ~~~~~~v~~l~~spdg~~l~~~~-----g~i~lwd~~~~~~~~~~~~h~~~v-~~l~~sp~~~~l~s~s~~d~~i~vwd~ 229 (612)
.........+ .-+|++.+.|+ ..+..||.++.+-...-. -..+. ...+..-+|+..+.| |.+.+||.
T Consensus 350 ~~~r~~~~~~--~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~-m~~~r~~~~~~~~~~~IYv~G----G~~e~ydp 422 (480)
T PHA02790 350 LKPRCNPAVA--SINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPS-TYYPHYKSCALVFGRRLFLVG----RNAEFYCE 422 (480)
T ss_pred CCCCcccEEE--EECCEEEEecCcCCCCccEEEEeCCCCEEEeCCC-CCCccccceEEEECCEEEEEC----CceEEecC
Confidence 1111122222 23677777776 357788887765322111 11111 111223345544443 24677888
Q ss_pred CCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecC-----CcEEEEECCCc
Q 007234 230 DGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET-----GVCYIWYGQNI 284 (612)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~d-----g~i~iwd~~~~ 284 (612)
.+.+-. .+..+..+......+. -+|+..+.|+.+ ..+..||..+.
T Consensus 423 ~~~~W~---~~~~m~~~r~~~~~~v-------~~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 423 SSNTWT---LIDDPIYPRDNPELII-------VDNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred CCCcEe---EcCCCCCCccccEEEE-------ECCEEEEECCcCCCcccceEEEEECCCC
Confidence 765422 2222222222222222 345666777654 24556665443
No 411
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=94.25 E-value=0.14 Score=34.83 Aligned_cols=35 Identities=23% Similarity=0.144 Sum_probs=30.3
Q ss_pred CCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCce
Q 007234 116 HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL 151 (612)
Q Consensus 116 h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~ 151 (612)
....|..++|+|....++.++.+|.|.++.+ +++.
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 3467999999999999999999999999998 5543
No 412
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=94.21 E-value=6.5 Score=40.54 Aligned_cols=202 Identities=18% Similarity=0.185 Sum_probs=111.3
Q ss_pred CcEEEEEECCCcEEEEEcCCCeEEEEeccCC-CCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCC-CCee
Q 007234 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCH-PGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST-KGIS 163 (612)
Q Consensus 86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h-~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~-~~v~ 163 (612)
+..+.+++.+|.|.-.|..++..++...... ...+.+-.+..+|+ ++.++.++.++.+|..+|+.+-...... ..+.
T Consensus 68 dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~ 146 (370)
T COG1520 68 DGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYA 146 (370)
T ss_pred CCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEe
Confidence 5667888999999999999999877553222 22334434444665 7888889999999998999888877655 1122
Q ss_pred EEEECCCCCEEEEeC-CeEEEEEcCCCeeEEEEecCC---CCEEEEEEeeCCcEEEEEEcC--CCeEEEEEcCCCccccc
Q 007234 164 CMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHP---GAVRFMTFSDNGKYVLSSAVG--ERYIALWRTDGVKKQSA 237 (612)
Q Consensus 164 ~l~~spdg~~l~~~~-g~i~lwd~~~~~~~~~~~~h~---~~v~~l~~sp~~~~l~s~s~~--d~~i~vwd~~~~~~~~~ 237 (612)
.-.+-.++..++... |.++-.|..+++..-...... ..+..--...++. ++.+. . ++.+.-.|..++...-.
T Consensus 147 ~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-vy~~~-~~~~~~~~a~~~~~G~~~w~ 224 (370)
T COG1520 147 SPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGT-VYVGS-DGYDGILYALNAEDGTLKWS 224 (370)
T ss_pred cCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecce-EEEec-CCCcceEEEEEccCCcEeee
Confidence 223333555555534 888888888887765543221 1111111122333 33332 3 44555566666553310
Q ss_pred e-eeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCC
Q 007234 238 S-CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKA 292 (612)
Q Consensus 238 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~ 292 (612)
. ........... ....+....+.-+ .-+..++.+|.+...|..+++.+.....
T Consensus 225 ~~~~~~~~~~~~~-~~~~~~~~~v~v~-~~~~~~~~~g~~~~l~~~~G~~~W~~~~ 278 (370)
T COG1520 225 QKVSQTIGRTAIS-TTPAVDGGPVYVD-GGVYAGSYGGKLLCLDADTGELIWSFPA 278 (370)
T ss_pred eeeecccCccccc-ccccccCceEEEC-CcEEEEecCCeEEEEEcCCCceEEEEec
Confidence 0 00111110000 0001110000011 2336667788888889999988865554
No 413
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=94.21 E-value=5.7 Score=38.46 Aligned_cols=114 Identities=18% Similarity=0.176 Sum_probs=70.2
Q ss_pred CCeEEEEEecCCCEEEEEecCCcEEEEE-CCCCceeE-EEecC--CCCeeEEEECCCCCEEEEeC-----CeEEEEEcC-
Q 007234 118 GGVSAISFATHGSCIYSAGADGMVCEID-PLTGSLLG-KFRAS--TKGISCMAVSSDGKMLATAA-----GQLKTFNCS- 187 (612)
Q Consensus 118 ~~V~~l~~sp~~~~l~s~s~dg~v~iwd-~~~~~~~~-~~~~~--~~~v~~l~~spdg~~l~~~~-----g~i~lwd~~- 187 (612)
..+....|++++...+....+...+++. ...++... .+... ...|..+.+||||..++... +.|++--+.
T Consensus 66 ~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r 145 (253)
T PF10647_consen 66 GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVR 145 (253)
T ss_pred CccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEe
Confidence 3788889999976665555566666663 33333222 22222 12799999999999887644 567666543
Q ss_pred --CC------eeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEE-EEcCC
Q 007234 188 --DH------KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIAL-WRTDG 231 (612)
Q Consensus 188 --~~------~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~v-wd~~~ 231 (612)
.+ ..+.........+..+.|.+++.+++.+...+..+.. .....
T Consensus 146 ~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~~~~~~~v~~dG 198 (253)
T PF10647_consen 146 DGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAGGPVVRLVSVDG 198 (253)
T ss_pred CCCCCcceeccceEecccccCcceeeeecCCCEEEEEeCCCCCceeEEEEccC
Confidence 22 1122222335678999999999988777655554444 44433
No 414
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=94.20 E-value=1.9 Score=47.08 Aligned_cols=142 Identities=15% Similarity=0.143 Sum_probs=77.2
Q ss_pred CcEEEEEECCCc-----EEEEEcCCCeEEEEeccCCCCCeEEEEEec-CCCEEEEEecCC------cEEEEECCCCceeE
Q 007234 86 SSLLVLGTGGGD-----VLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADG------MVCEIDPLTGSLLG 153 (612)
Q Consensus 86 ~~~l~~gs~~g~-----I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp-~~~~l~s~s~dg------~v~iwd~~~~~~~~ 153 (612)
+.+.++|+.+|. |-.||+.+.+-...- .......+..... +|...+.||.++ +|..||..+++-..
T Consensus 381 g~iYavGG~dg~~~l~svE~YDp~~~~W~~va--~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~ 458 (571)
T KOG4441|consen 381 GKLYAVGGFDGEKSLNSVECYDPVTNKWTPVA--PMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTL 458 (571)
T ss_pred CEEEEEeccccccccccEEEecCCCCcccccC--CCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceee
Confidence 778889999876 788998887653211 1222333333222 677777777554 57788887764322
Q ss_pred --EEecCCCCeeEEEECCCCCEEEEeC--C-----eEEEEEcCCCeeEEEEecCCCCEEEEEEe-eCCcEEEEEEcCCC-
Q 007234 154 --KFRASTKGISCMAVSSDGKMLATAA--G-----QLKTFNCSDHKKMQKFSGHPGAVRFMTFS-DNGKYVLSSAVGER- 222 (612)
Q Consensus 154 --~~~~~~~~v~~l~~spdg~~l~~~~--g-----~i~lwd~~~~~~~~~~~~h~~~v~~l~~s-p~~~~l~s~s~~d~- 222 (612)
.+........ ++.- ++.+.+.|+ + +|..||..+.+.... ..-..+....... -++...+.+| .|+
T Consensus 459 ~~~M~~~R~~~g-~a~~-~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v-~~m~~~rs~~g~~~~~~~ly~vGG-~~~~ 534 (571)
T KOG4441|consen 459 IAPMNTRRSGFG-VAVL-NGKIYVVGGFDGTSALSSVERYDPETNQWTMV-APMTSPRSAVGVVVLGGKLYAVGG-FDGN 534 (571)
T ss_pred cCCcccccccce-EEEE-CCEEEEECCccCCCccceEEEEcCCCCceeEc-ccCccccccccEEEECCEEEEEec-ccCc
Confidence 2222222222 3332 566777776 2 488899888764332 1112222222222 2455555555 565
Q ss_pred ----eEEEEEcCCCc
Q 007234 223 ----YIALWRTDGVK 233 (612)
Q Consensus 223 ----~i~vwd~~~~~ 233 (612)
+|..||..+.+
T Consensus 535 ~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 535 NNLNTVECYDPETDT 549 (571)
T ss_pred cccceeEEcCCCCCc
Confidence 56677666554
No 415
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=94.12 E-value=6 Score=44.47 Aligned_cols=174 Identities=10% Similarity=0.065 Sum_probs=106.7
Q ss_pred EEEEEcCCCeEEEEeccCCC---CCeEEEEEecC-CCEEEEEe----------cCCcEEEEECCCCceeEEEecC--CCC
Q 007234 98 VLALAVSAGQLKWRLSDCHP---GGVSAISFATH-GSCIYSAG----------ADGMVCEIDPLTGSLLGKFRAS--TKG 161 (612)
Q Consensus 98 I~vwd~~~~~~~~~~~~~h~---~~V~~l~~sp~-~~~l~s~s----------~dg~v~iwd~~~~~~~~~~~~~--~~~ 161 (612)
++++|-++-+.+....-... ..|.++.|..| +.++++|. ..|.|.++.+..++.++....+ .+.
T Consensus 752 l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Ga 831 (1096)
T KOG1897|consen 752 LRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGA 831 (1096)
T ss_pred EEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccc
Confidence 67777777666533321112 23555568877 56666664 2467778777664433333222 344
Q ss_pred eeEEEECCCCCEEEEeCCeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeE
Q 007234 162 ISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVL 241 (612)
Q Consensus 162 v~~l~~spdg~~l~~~~g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~ 241 (612)
+.++..- +|+++|.-+..|++|++.+.+.++.-..|..++..+...-.|..++.+. --+.+.+...+..+.. ....
T Consensus 832 v~aL~~f-ngkllA~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgD-lm~Sitll~y~~~eg~--f~ev 907 (1096)
T KOG1897|consen 832 VYALVEF-NGKLLAGINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGD-LMRSITLLQYKGDEGN--FEEV 907 (1096)
T ss_pred eeehhhh-CCeEEEecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEee-ccceEEEEEEeccCCc--eEEe
Confidence 5555443 6888887778999999999977777778889999999998899888876 4666666554433311 0122
Q ss_pred eecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEEC
Q 007234 242 AMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (612)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~ 281 (612)
.-+-....+..+.+- ++...+.+..+|.+.+-..
T Consensus 908 ArD~~p~Wmtaveil------~~d~ylgae~~gNlf~v~~ 941 (1096)
T KOG1897|consen 908 ARDYNPNWMTAVEIL------DDDTYLGAENSGNLFTVRK 941 (1096)
T ss_pred ehhhCccceeeEEEe------cCceEEeecccccEEEEEe
Confidence 223334444444443 3455566667777777643
No 416
>PRK10115 protease 2; Provisional
Probab=94.12 E-value=12 Score=41.99 Aligned_cols=188 Identities=8% Similarity=0.019 Sum_probs=93.8
Q ss_pred EEEcCCCCEEEEEeC-C----CcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccC
Q 007234 11 TSFSPALDYFAICSG-D----ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLG 85 (612)
Q Consensus 11 ~~fspdg~~las~s~-d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 85 (612)
+.+||||++||.+.. + ..|++-|+.+|..+...- ......+.|.+.+
T Consensus 132 ~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i--------------------~~~~~~~~w~~D~-------- 183 (686)
T PRK10115 132 MAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELL--------------------DNVEPSFVWANDS-------- 183 (686)
T ss_pred EEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccc--------------------cCcceEEEEeeCC--------
Confidence 388999999987643 2 358888888775332110 0011236775542
Q ss_pred CcEEEEEECC-----CcEEEEEcCCCe--EEEEeccCCCCCeE-EEEEecCCCEEEEEec---CCcEEEEECC--CCcee
Q 007234 86 SSLLVLGTGG-----GDVLALAVSAGQ--LKWRLSDCHPGGVS-AISFATHGSCIYSAGA---DGMVCEIDPL--TGSLL 152 (612)
Q Consensus 86 ~~~l~~gs~~-----g~I~vwd~~~~~--~~~~~~~~h~~~V~-~l~~sp~~~~l~s~s~---dg~v~iwd~~--~~~~~ 152 (612)
..++++.... ..|+.+++.++. ...-+ ........ ....+.++++++..+. ++.+.+++.. .+...
T Consensus 184 ~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~-~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~ 262 (686)
T PRK10115 184 WTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVY-EEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPF 262 (686)
T ss_pred CEEEEEEecCCCCCCCEEEEEECCCChhHCeEEE-eeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCce
Confidence 3344443322 248889998873 22122 22222233 3333447887655443 4578888842 34432
Q ss_pred EEEecCCCCeeEEEECCCCCEEEEeC-----CeEEEEEcCCCeeEEEEecC-C-CCEEEEEEeeCCcEEEEEEcCCCeEE
Q 007234 153 GKFRASTKGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKKMQKFSGH-P-GAVRFMTFSDNGKYVLSSAVGERYIA 225 (612)
Q Consensus 153 ~~~~~~~~~v~~l~~spdg~~l~~~~-----g~i~lwd~~~~~~~~~~~~h-~-~~v~~l~~sp~~~~l~s~s~~d~~i~ 225 (612)
..+.........+. +..+.+.+... ..|...++........+-.+ . ..+..+.+. +.+|+.....++.-+
T Consensus 263 ~~~~~~~~~~~~~~-~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~~~~~g~~~ 339 (686)
T PRK10115 263 VFLPRRKDHEYSLD-HYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDWLVVEERQRGLTS 339 (686)
T ss_pred EEEECCCCCEEEEE-eCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCEEEEEEEeCCEEE
Confidence 23332223223332 33333333333 24544455522222334344 3 367777776 334555444677666
Q ss_pred EEEcC
Q 007234 226 LWRTD 230 (612)
Q Consensus 226 vwd~~ 230 (612)
++-+.
T Consensus 340 l~~~~ 344 (686)
T PRK10115 340 LRQIN 344 (686)
T ss_pred EEEEc
Confidence 65554
No 417
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=94.08 E-value=13 Score=42.01 Aligned_cols=132 Identities=11% Similarity=0.058 Sum_probs=66.1
Q ss_pred CcEEEEECCCCceeEEEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEe--cCCCCEEEEEEeeC--Cc
Q 007234 139 GMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS--GHPGAVRFMTFSDN--GK 212 (612)
Q Consensus 139 g~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~--~h~~~v~~l~~sp~--~~ 212 (612)
..||+++-. .....+... ..++..+.+.+...++.++ +.+...++..+. ++... .-...|.|+.++|- ++
T Consensus 470 ~~iRl~ss~--~~~~~W~~p-~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~-l~e~~~~~~e~evaCLDisp~~d~~ 545 (1096)
T KOG1897|consen 470 NSIRLVSSA--GLRSEWRPP-GKITIGVVSANASQVVVAGGGLALFYLEIEDGG-LREVSHKEFEYEVACLDISPLGDAP 545 (1096)
T ss_pred ccEEEEcch--hhhhcccCC-CceEEEEEeecceEEEEecCccEEEEEEeeccc-eeeeeeheecceeEEEecccCCCCC
Confidence 346666633 233444433 3344444444444554444 445445555443 33222 23467999999974 33
Q ss_pred E---EEEEEcCCCeEEEEEc-CCCccccceeeEeecCC--ceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECC
Q 007234 213 Y---VLSSAVGERYIALWRT-DGVKKQSASCVLAMEHP--AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (612)
Q Consensus 213 ~---l~s~s~~d~~i~vwd~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~ 282 (612)
. ++..|.++..+.+--. ...... +...+... ...+-...+. .|..+|.++..||.+..|-+.
T Consensus 546 ~~s~~~aVG~Ws~~~~~l~~~pd~~~~---~~~~l~~~~iPRSIl~~~~e-----~d~~yLlvalgdG~l~~fv~d 613 (1096)
T KOG1897|consen 546 NKSRLLAVGLWSDISMILTFLPDLILI---THEQLSGEIIPRSILLTTFE-----GDIHYLLVALGDGALLYFVLD 613 (1096)
T ss_pred CcceEEEEEeecceEEEEEECCCccee---eeeccCCCccchheeeEEee-----ccceEEEEEcCCceEEEEEEE
Confidence 2 4444457776554432 332221 11112111 1222233343 568999999999988776543
No 418
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.96 E-value=4.6 Score=39.06 Aligned_cols=116 Identities=7% Similarity=0.122 Sum_probs=79.8
Q ss_pred CCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecC-CCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCee
Q 007234 115 CHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS-TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKK 191 (612)
Q Consensus 115 ~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~-~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~ 191 (612)
+-...|.++.|+|+.+.|++......-.+|=...|+.++++.-. -.....|.+..+|+++++-- +.++++.+.....
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~ 162 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTT 162 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCcc
Confidence 44456999999999999998887777777766789998886532 22456788887777766655 7888877665422
Q ss_pred EE-----EEe----cC-CCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCC
Q 007234 192 MQ-----KFS----GH-PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (612)
Q Consensus 192 ~~-----~~~----~h-~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~ 231 (612)
+. +++ .+ +...-.++|.|.+..|+.+- +-+=+.||.+..
T Consensus 163 ~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aK-Er~P~~I~~~~~ 211 (316)
T COG3204 163 VISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAK-ERNPIGIFEVTQ 211 (316)
T ss_pred EEeccceEEeccccCCCCcCceeeecCCCCceEEEEE-ccCCcEEEEEec
Confidence 11 111 12 44567899999888787764 455566666553
No 419
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=93.76 E-value=1.4 Score=45.43 Aligned_cols=152 Identities=13% Similarity=0.110 Sum_probs=93.8
Q ss_pred EEcCCCCEEEE-EeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEE
Q 007234 12 SFSPALDYFAI-CSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV 90 (612)
Q Consensus 12 ~fspdg~~las-~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~ 90 (612)
-+..|.++|.. |+....+.-.|++-|+.+.+++.+... -+.|.+...-. +-....-+
T Consensus 474 lh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~--------------------qmt~eqtl 531 (776)
T COG5167 474 LHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQ--------------------QMTDEQTL 531 (776)
T ss_pred eecCCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHH--------------------hcCccceE
Confidence 45556666654 444567777899999999999866543 22333321100 00133346
Q ss_pred EEECCCcEEEEEcCCCe-EEEEeccCCCCCeEEEEEe----cCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEE
Q 007234 91 LGTGGGDVLALAVSAGQ-LKWRLSDCHPGGVSAISFA----THGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCM 165 (612)
Q Consensus 91 ~gs~~g~I~vwd~~~~~-~~~~~~~~h~~~V~~l~~s----p~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l 165 (612)
+|-.+..|.-.|++-.. .+... .....++--.|+ ..+.+++.||.-|-|++||--.-+...-+.+....|..+
T Consensus 532 vGlS~~svFrIDPR~~gNKi~v~--esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~i 609 (776)
T COG5167 532 VGLSDYSVFRIDPRARGNKIKVV--ESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHI 609 (776)
T ss_pred EeecccceEEecccccCCceeee--eehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeee
Confidence 67777777777765322 21111 111122222222 234589999999999999954333344466667789999
Q ss_pred EECCCCCEEEEeC-CeEEEEEcC
Q 007234 166 AVSSDGKMLATAA-GQLKTFNCS 187 (612)
Q Consensus 166 ~~spdg~~l~~~~-g~i~lwd~~ 187 (612)
..+.+|+++++.+ ..+.+-|++
T Consensus 610 dvta~Gk~ilaTCk~yllL~d~~ 632 (776)
T COG5167 610 DVTANGKHILATCKNYLLLTDVP 632 (776)
T ss_pred EeecCCcEEEEeecceEEEEecc
Confidence 9999999998887 888888864
No 420
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.54 E-value=3.9 Score=45.75 Aligned_cols=35 Identities=9% Similarity=0.009 Sum_probs=28.9
Q ss_pred CCCCCeEEEEEecC---CCEEEEEecCCcEEEEECCCC
Q 007234 115 CHPGGVSAISFATH---GSCIYSAGADGMVCEIDPLTG 149 (612)
Q Consensus 115 ~h~~~V~~l~~sp~---~~~l~s~s~dg~v~iwd~~~~ 149 (612)
.+...|..+.|+|. +.+|+.=..|+++|+||+...
T Consensus 144 ~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 144 NSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred CCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 35568899999995 478888889999999999654
No 421
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=92.84 E-value=6.4 Score=36.08 Aligned_cols=171 Identities=13% Similarity=0.092 Sum_probs=96.4
Q ss_pred CCEEEEEeC--CCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEEC
Q 007234 17 LDYFAICSG--DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG 94 (612)
Q Consensus 17 g~~las~s~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~ 94 (612)
|.++.+.+. ...|++||+.+|+.+.+-+-.. ...|. ...+ +.++.+-...-.
T Consensus 56 g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~----~~~Fg---------EGit-------------~~gd~~y~LTw~ 109 (262)
T COG3823 56 GHILESTGLYGFSKIRVSDLTTGQEIFSEKLAP----DTVFG---------EGIT-------------KLGDYFYQLTWK 109 (262)
T ss_pred CEEEEeccccccceeEEEeccCceEEEEeecCC----ccccc---------ccee-------------eccceEEEEEec
Confidence 445555554 3479999999999876543210 01111 1111 111344556667
Q ss_pred CCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecC--CC---CeeEEEECC
Q 007234 95 GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS--TK---GISCMAVSS 169 (612)
Q Consensus 95 ~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~--~~---~v~~l~~sp 169 (612)
+|.-..||..+-+++.++. ..+.=++++. |++.|+.++...+++.-|.++.....++... .. .++-+.|-
T Consensus 110 egvaf~~d~~t~~~lg~~~--y~GeGWgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V- 184 (262)
T COG3823 110 EGVAFKYDADTLEELGRFS--YEGEGWGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV- 184 (262)
T ss_pred cceeEEEChHHhhhhcccc--cCCcceeeec--CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-
Confidence 7888899999888876653 3344455543 5666888776777887787665444433221 11 22334443
Q ss_pred CCCEEEEeC--CeEEEEEcCCCeeEEEEe------------cCCCCEEEEEEeeCCcEEEEEE
Q 007234 170 DGKMLATAA--GQLKTFNCSDHKKMQKFS------------GHPGAVRFMTFSDNGKYVLSSA 218 (612)
Q Consensus 170 dg~~l~~~~--g~i~lwd~~~~~~~~~~~------------~h~~~v~~l~~sp~~~~l~s~s 218 (612)
||...|-.= ..|...|.++|+.+..+. .|..-.+.|++.|++..++..|
T Consensus 185 dG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 185 DGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred ccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 454444322 455556666776654432 2344567889988875555544
No 422
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.65 E-value=0.52 Score=53.11 Aligned_cols=151 Identities=7% Similarity=-0.054 Sum_probs=93.1
Q ss_pred EEEcCCCCEEEEEeC--CCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcE
Q 007234 11 TSFSPALDYFAICSG--DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (612)
Q Consensus 11 ~~fspdg~~las~s~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (612)
+...+|+...++... +-.|..||+++-..-..... .-+.++.. .-....-..|+.|.+.- ...
T Consensus 106 ~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~-----~pl~~s~t--s~ek~vf~~~~~wnP~v--------p~n 170 (1405)
T KOG3630|consen 106 FVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETT-----VPLKNSAT--SFEKPVFQLKNVWNPLV--------PLN 170 (1405)
T ss_pred EEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhc-----cccccccc--hhccccccccccccCCc--------cch
Confidence 367788776665443 34788889875432210000 00000000 00012235578888765 345
Q ss_pred EEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecC----CCCeeE
Q 007234 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS----TKGISC 164 (612)
Q Consensus 89 l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~----~~~v~~ 164 (612)
.+++..|+.|.+..+..-.....- ......+++++|+|.|+.++.|-..|++.-|... ++....+.+. ...|.+
T Consensus 171 ~av~l~dlsl~V~~~~~~~~~v~s-~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~ 248 (1405)
T KOG3630|consen 171 SAVDLSDLSLRVKSTKQLAQNVTS-FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLS 248 (1405)
T ss_pred hhhhccccchhhhhhhhhhhhhcc-cCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeE
Confidence 788889999988877643332121 1245678999999999999999999999988753 4433333321 357999
Q ss_pred EEECCCCCEEEEeC
Q 007234 165 MAVSSDGKMLATAA 178 (612)
Q Consensus 165 l~~spdg~~l~~~~ 178 (612)
|+|-....++++-+
T Consensus 249 v~Wl~t~eflvvy~ 262 (1405)
T KOG3630|consen 249 VTWLSTQEFLVVYG 262 (1405)
T ss_pred EEEecceeEEEEec
Confidence 99988777777655
No 423
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=92.61 E-value=4.8 Score=43.90 Aligned_cols=119 Identities=13% Similarity=0.128 Sum_probs=71.2
Q ss_pred EEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEe-cCCCCEEEEEEe--eCCcEEEEEEcCCCeEEEEE
Q 007234 154 KFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS-GHPGAVRFMTFS--DNGKYVLSSAVGERYIALWR 228 (612)
Q Consensus 154 ~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~-~h~~~v~~l~~s--p~~~~l~s~s~~d~~i~vwd 228 (612)
++......++-+.-+.-++..++.+ .++.|||.+.+....+-. ...+.|..+.|. |+|+.+++.| -.+.|.++.
T Consensus 24 ~~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVG-f~~~v~l~~ 102 (631)
T PF12234_consen 24 TFETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVG-FPHHVLLYT 102 (631)
T ss_pred EEecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEE-cCcEEEEEE
Confidence 3444444556666666666666654 689999999887533222 457889999886 7899999998 488888885
Q ss_pred cC----CCccccceeeEee---cCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEE
Q 007234 229 TD----GVKKQSASCVLAM---EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY 280 (612)
Q Consensus 229 ~~----~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd 280 (612)
-. +........+..+ .+....+....|. ++|.+++++ ++.+.|+|
T Consensus 103 Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl-----~~G~LvV~s--GNqlfv~d 154 (631)
T PF12234_consen 103 QLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWL-----KDGTLVVGS--GNQLFVFD 154 (631)
T ss_pred ccchhhhcCCcccceeEEEEeecCCCCCccceeEe-----cCCeEEEEe--CCEEEEEC
Confidence 32 1111111112111 2232333344444 777765544 34788887
No 424
>PRK13684 Ycf48-like protein; Provisional
Probab=92.51 E-value=13 Score=37.62 Aligned_cols=150 Identities=16% Similarity=0.177 Sum_probs=81.6
Q ss_pred CCCeEEEEEecCCCEEEEEecCCcEEEE-ECCCCceeEEEe-cCCCCeeEEEECCCCCEEEEeC-CeEEEEEcCCCeeEE
Q 007234 117 PGGVSAISFATHGSCIYSAGADGMVCEI-DPLTGSLLGKFR-ASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQ 193 (612)
Q Consensus 117 ~~~V~~l~~sp~~~~l~s~s~dg~v~iw-d~~~~~~~~~~~-~~~~~v~~l~~spdg~~l~~~~-g~i~lwd~~~~~~~~ 193 (612)
...+.++.+.|++.+++++ ..|.+..- | ..++.-.... .....++++.+.|+++.++++. |.+++=....+..-.
T Consensus 172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~sW~ 249 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARGGQIRFNDPDDLESWS 249 (334)
T ss_pred cceEEEEEECCCCeEEEEe-CCceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEecCCEEEEccCCCCCccc
Confidence 4568899999988655554 56655432 2 2222222222 2345789999999999988888 766532344443322
Q ss_pred EEecC----CCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEe-ecCCceeEEeEEecCCccCCCCcEEE
Q 007234 194 KFSGH----PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLA-MEHPAVFMDCRCIDNGGVDDAGLYVL 268 (612)
Q Consensus 194 ~~~~h----~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~ 268 (612)
....+ ...+..+.+.|++..+++ + .+|.+. ...+.++.- ..... ..-+......+.. .++ ..+
T Consensus 250 ~~~~~~~~~~~~l~~v~~~~~~~~~~~-G-~~G~v~-~S~d~G~tW--~~~~~~~~~~~~~~~~~~~------~~~-~~~ 317 (334)
T PRK13684 250 KPIIPEITNGYGYLDLAYRTPGEIWAG-G-GNGTLL-VSKDGGKTW--EKDPVGEEVPSNFYKIVFL------DPE-KGF 317 (334)
T ss_pred cccCCccccccceeeEEEcCCCCEEEE-c-CCCeEE-EeCCCCCCC--eECCcCCCCCcceEEEEEe------CCC-ceE
Confidence 22111 234778899998876554 4 477554 444444321 11110 0112233344433 333 445
Q ss_pred EEecCCcEEEEE
Q 007234 269 AISETGVCYIWY 280 (612)
Q Consensus 269 t~s~dg~i~iwd 280 (612)
..+..|.|.-|+
T Consensus 318 ~~G~~G~il~~~ 329 (334)
T PRK13684 318 VLGQRGVLLRYV 329 (334)
T ss_pred EECCCceEEEec
Confidence 567778887775
No 425
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=92.08 E-value=5.9 Score=36.67 Aligned_cols=101 Identities=14% Similarity=0.204 Sum_probs=62.9
Q ss_pred CEEEEEecCCcEEEEECC--CCceeEEEecCCCCeeEEEECCCCCEEEEeC-----C---eEEEE---EcC--CCeeEE-
Q 007234 130 SCIYSAGADGMVCEIDPL--TGSLLGKFRASTKGISCMAVSSDGKMLATAA-----G---QLKTF---NCS--DHKKMQ- 193 (612)
Q Consensus 130 ~~l~s~s~dg~v~iwd~~--~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~-----g---~i~lw---d~~--~~~~~~- 193 (612)
..|+.+...+.|.+|++. ..+....|.. -+.|..+.++..|+++++-- . .+++| ... ..++++
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 455555667889999988 3355666664 37899999999999999864 3 45665 221 112222
Q ss_pred EEecC---------------------CCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCc
Q 007234 194 KFSGH---------------------PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (612)
Q Consensus 194 ~~~~h---------------------~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~ 233 (612)
.+-|| ..++.+++..|-.-.|+.++ ++.+.+|.+....
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~--~~~l~lf~l~~~~ 166 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC--GNKLVLFTLKYQT 166 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc--CCEEEEEEEEEEE
Confidence 22232 23456677776433355554 5689999876543
No 426
>PRK10115 protease 2; Provisional
Probab=91.92 E-value=26 Score=39.55 Aligned_cols=98 Identities=8% Similarity=0.005 Sum_probs=60.5
Q ss_pred CcEEEEEE-CCCc----EEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecC------CcEEEEECCCC--cee
Q 007234 86 SSLLVLGT-GGGD----VLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD------GMVCEIDPLTG--SLL 152 (612)
Q Consensus 86 ~~~l~~gs-~~g~----I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~d------g~v~iwd~~~~--~~~ 152 (612)
+++|+.+. .+|. |++.|+.+|..+.....+ .-..++|.+|++.|+.+..+ ..|+.+++.++ +-.
T Consensus 138 g~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~---~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~ 214 (686)
T PRK10115 138 NTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN---VEPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDE 214 (686)
T ss_pred CCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC---cceEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCe
Confidence 56666554 3444 889999988744333221 12569999999876665432 36888898887 434
Q ss_pred EEEecCCCCee-EEEECCCCCEEEEeC-----CeEEEEEc
Q 007234 153 GKFRASTKGIS-CMAVSSDGKMLATAA-----GQLKTFNC 186 (612)
Q Consensus 153 ~~~~~~~~~v~-~l~~spdg~~l~~~~-----g~i~lwd~ 186 (612)
..+........ .+..+.|+++++..+ +.+.+++.
T Consensus 215 lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 215 LVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred EEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 44544333333 334455888776544 47888884
No 427
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=91.80 E-value=7 Score=43.16 Aligned_cols=101 Identities=15% Similarity=0.086 Sum_probs=63.9
Q ss_pred CcEEEEEECCCcEEEEEcCC-------C----eE-E------EEeccCCCCCeEEEEEe--cCCCEEEEEecCCcEEEEE
Q 007234 86 SSLLVLGTGGGDVLALAVSA-------G----QL-K------WRLSDCHPGGVSAISFA--THGSCIYSAGADGMVCEID 145 (612)
Q Consensus 86 ~~~l~~gs~~g~I~vwd~~~-------~----~~-~------~~~~~~h~~~V~~l~~s--p~~~~l~s~s~dg~v~iwd 145 (612)
...|++|..||.|.+|.+++ . +. . ..+.......+++++++ ...+++++++....|.+|-
T Consensus 114 ~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFa 193 (717)
T PF08728_consen 114 EEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFA 193 (717)
T ss_pred eeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEE
Confidence 67899999999999997631 1 00 0 01111234578999998 7777777777777777775
Q ss_pred CCCC--ceeE-EEecCCCCeeEEEECCCC-----C-EEEEeC--CeEEEEEc
Q 007234 146 PLTG--SLLG-KFRASTKGISCMAVSSDG-----K-MLATAA--GQLKTFNC 186 (612)
Q Consensus 146 ~~~~--~~~~-~~~~~~~~v~~l~~spdg-----~-~l~~~~--g~i~lwd~ 186 (612)
+... +... .-..+...|-+|+|-++. . .+++++ |.+.+|++
T Consensus 194 f~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 194 FALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 4332 1111 011245578899987643 2 666666 88888887
No 428
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=91.79 E-value=14 Score=39.47 Aligned_cols=115 Identities=9% Similarity=0.077 Sum_probs=72.5
Q ss_pred CCCCeEEEEEecC----CCEEEEEecCCcEEEEECC-----CCceeEEEecCC-----CCeeEEEECCCCCEEEEeC-Ce
Q 007234 116 HPGGVSAISFATH----GSCIYSAGADGMVCEIDPL-----TGSLLGKFRAST-----KGISCMAVSSDGKMLATAA-GQ 180 (612)
Q Consensus 116 h~~~V~~l~~sp~----~~~l~s~s~dg~v~iwd~~-----~~~~~~~~~~~~-----~~v~~l~~spdg~~l~~~~-g~ 180 (612)
.-..|.+++|.|- ...+++.-....|.+|.+. .++.+.....+- --...+.|+|....|++-. ..
T Consensus 55 qFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~d 134 (671)
T PF15390_consen 55 QFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARD 134 (671)
T ss_pred ccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCc
Confidence 3356899999984 3356666678899999875 233332222111 1235678999998887665 33
Q ss_pred E-EEEEcC--CCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCC
Q 007234 181 L-KTFNCS--DHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (612)
Q Consensus 181 i-~lwd~~--~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~ 231 (612)
+ .+++++ +.+....+ ...+.|.|.+|.+||+.|+.+-...=.-++||-..
T Consensus 135 vSV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 135 VSVLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred eeEeeeeeeCCceEEEec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence 4 334443 33333444 35678999999999998887642233567887543
No 429
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=91.67 E-value=21 Score=38.11 Aligned_cols=115 Identities=11% Similarity=0.148 Sum_probs=67.0
Q ss_pred eeEEEeeecccccccccCCcEEEEEECCCcEEEEEcCC-----CeEEE----EeccCCCCCeEEEEEecCCCEEEEEecC
Q 007234 68 YTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSA-----GQLKW----RLSDCHPGGVSAISFATHGSCIYSAGAD 138 (612)
Q Consensus 68 ~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~-----~~~~~----~~~~~h~~~V~~l~~sp~~~~l~s~s~d 138 (612)
+..+.|.|..... ..-+++......|.||.+.- ++.+. .+.+...---.++.|+|....|+.-...
T Consensus 59 V~GlsW~P~~~~~-----~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~ 133 (671)
T PF15390_consen 59 VHGLSWAPPCTAD-----TPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTAR 133 (671)
T ss_pred eeeeeecCcccCC-----CCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecC
Confidence 3456676653220 22455566667799998852 22221 1111111123578899988776655444
Q ss_pred CcEEEEECCCC--ceeEEEecCCCCeeEEEECCCCCEEEEeCC---eEEEEEcCC
Q 007234 139 GMVCEIDPLTG--SLLGKFRASTKGISCMAVSSDGKMLATAAG---QLKTFNCSD 188 (612)
Q Consensus 139 g~v~iwd~~~~--~~~~~~~~~~~~v~~l~~spdg~~l~~~~g---~i~lwd~~~ 188 (612)
..=.+++++.. +....++ ..+.|.|.+|.+||+.|+++-| .-++||-..
T Consensus 134 dvSV~~sV~~d~srVkaDi~-~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 134 DVSVLPSVHCDSSRVKADIK-TSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred ceeEeeeeeeCCceEEEecc-CCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence 43345555433 2333343 4578999999999999887763 568898543
No 430
>PF08625 Utp13: Utp13 specific WD40 associated domain; InterPro: IPR013934 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. Utp13 is a nucleolar protein and component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA []. Upt13 is also a component of the Pwp2 complex that forms part of a stable particle subunit independent of the U3 small nucleolar ribonucleoprotein that is essential for the initial assembly steps of the 90S pre-ribosome []. Components of the Pwp2 complex are: Utp1 (Pwp2), Utp6, Utp12 (Dip2), Utp13, Utp18, and Utp21. The relationship between the Pwp2 complex and the t-Utps complex [] that also associates with the 5' end of nascent pre-18S rRNA is unclear. ; GO: 0006364 rRNA processing, 0032040 small-subunit processome
Probab=91.61 E-value=0.47 Score=41.10 Aligned_cols=69 Identities=22% Similarity=0.268 Sum_probs=59.7
Q ss_pred hHHHHhhhccChhhHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHhcc-cccCCcChHHHHHHHHHHHHh
Q 007234 492 KKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNHGH-HLLSQESLTPMLSSLYKVFRS 561 (612)
Q Consensus 492 ~~I~~ti~~Lp~~~~~~lL~~l~~~l~~~~~~~~~~~~W~~~ll~~H~~-~l~s~~~l~~~L~~l~~~l~~ 561 (612)
..|+.+|..|+......||+++. .|+.++..+...+..+.+||+.|.. .|...|++...+..|-...++
T Consensus 49 ~~l~~~i~~L~~~~l~~LL~~ir-~WNTNsr~~~vAQ~vL~~il~~~~~~~L~~~~~~~~~le~lipYteR 118 (141)
T PF08625_consen 49 EELDEVIKKLDDEQLEKLLRFIR-DWNTNSRTSHVAQRVLNAILKSHPPEELLKIPGLKEILEALIPYTER 118 (141)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHH-HhhcccccHHHHHHHHHHHHHhCCHHHHHccccHHHHHHHHhhhHHH
Confidence 67999999999999999999998 7999998899999999999998875 467888888888887655443
No 431
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.43 E-value=15 Score=40.21 Aligned_cols=146 Identities=15% Similarity=0.123 Sum_probs=72.7
Q ss_pred CcEEEEEECCCcEEEEEcCCCeEEE--EeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEec---CCC
Q 007234 86 SSLLVLGTGGGDVLALAVSAGQLKW--RLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA---STK 160 (612)
Q Consensus 86 ~~~l~~gs~~g~I~vwd~~~~~~~~--~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~---~~~ 160 (612)
...+++...+|.++||++....... .-.+.....|..+.|..+|-.+.+. +|.+.+-+-.....+.+++. ...
T Consensus 94 ~eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GVavlt~--~g~v~~i~~~~~~~~~~~~diP~~~~ 171 (829)
T KOG2280|consen 94 DEELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGVAVLTV--SGQVILINGVEEPKLRKMPDIPYNEL 171 (829)
T ss_pred CceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCceEEEec--CCcEEEEcCCCcchhhhCCCCCCccC
Confidence 4668999999999999986443321 1011223446666666566444443 45554443222212223222 111
Q ss_pred CeeEEEECCCCC---EEEEeC---C-eEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCc
Q 007234 161 GISCMAVSSDGK---MLATAA---G-QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (612)
Q Consensus 161 ~v~~l~~spdg~---~l~~~~---g-~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~ 233 (612)
+.+|-...+++. .++-.. + .+.--+..+.+.. .+....+.+..+..||+.++|+--. .+|.|.+-+.+..+
T Consensus 172 ~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~-~~~~~~~~~~ki~VS~n~~~laLyt-~~G~i~~vs~D~~~ 249 (829)
T KOG2280|consen 172 PKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLH-ALSWPNSSVVKISVSPNRRFLALYT-ETGKIWVVSIDLSQ 249 (829)
T ss_pred CCcceeEecCCCcceeEEeechhhhhcccceeccccccc-ccCCCCceEEEEEEcCCcceEEEEe-cCCcEEEEecchhh
Confidence 222333223221 111111 1 1111122222221 2222235678889999999988876 68888888776655
Q ss_pred cc
Q 007234 234 KQ 235 (612)
Q Consensus 234 ~~ 235 (612)
..
T Consensus 250 ~l 251 (829)
T KOG2280|consen 250 IL 251 (829)
T ss_pred hh
Confidence 33
No 432
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=91.38 E-value=5.8 Score=41.21 Aligned_cols=135 Identities=15% Similarity=0.239 Sum_probs=85.0
Q ss_pred EECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCC-------EEEEEecCCcEEEEECCCCc-eeEE--Eec--CC
Q 007234 92 GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS-------CIYSAGADGMVCEIDPLTGS-LLGK--FRA--ST 159 (612)
Q Consensus 92 gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~-------~l~s~s~dg~v~iwd~~~~~-~~~~--~~~--~~ 159 (612)
|..-..++-.|++.|+.+.... -|... -+.|.|+.+ .-+.|-.+..|.-.|.+-.. .+.. .+. ..
T Consensus 486 g~~~~kLykmDIErGkvveeW~-~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY~tK 562 (776)
T COG5167 486 GGERDKLYKMDIERGKVVEEWD-LKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDYKTK 562 (776)
T ss_pred CCCcccceeeecccceeeeEee-cCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhcccc
Confidence 4444558888999999886663 34443 566777542 12344456667777765322 1111 111 12
Q ss_pred CCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCC
Q 007234 160 KGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (612)
Q Consensus 160 ~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~ 232 (612)
....|..-..+| ++|+++ |.|++||--.-+....+++-...|..+..+.+|+++++.| ..++.+-|+.-.
T Consensus 563 n~Fss~~tTesG-yIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC--k~yllL~d~~ik 634 (776)
T COG5167 563 NKFSSGMTTESG-YIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC--KNYLLLTDVPIK 634 (776)
T ss_pred ccccccccccCc-eEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee--cceEEEEecccc
Confidence 234444444444 777777 9999999544334445677778899999999999998886 467888776543
No 433
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=91.33 E-value=18 Score=36.64 Aligned_cols=28 Identities=21% Similarity=0.297 Sum_probs=21.9
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCcE
Q 007234 10 LTSFSPALDYFAICSGDARIKIWDTLKGQV 39 (612)
Q Consensus 10 ~~~fspdg~~las~s~dg~i~iwd~~~~~~ 39 (612)
.++|.|||++|++ ...|.|++++ ..+..
T Consensus 6 ~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~ 33 (331)
T PF07995_consen 6 SMAFLPDGRLLVA-ERSGRIWVVD-KDGSL 33 (331)
T ss_dssp EEEEETTSCEEEE-ETTTEEEEEE-TTTEE
T ss_pred EEEEeCCCcEEEE-eCCceEEEEe-CCCcC
Confidence 5699999988765 5699999999 45554
No 434
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.90 E-value=3.3 Score=47.09 Aligned_cols=127 Identities=13% Similarity=0.009 Sum_probs=77.8
Q ss_pred EEEEECCCc-EEEEEcCCCeEE----EE------eccCCCCCeEEEEEecCCC-EEEEEecCCcEEEEECCCCc-eeEEE
Q 007234 89 LVLGTGGGD-VLALAVSAGQLK----WR------LSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTGS-LLGKF 155 (612)
Q Consensus 89 l~~gs~~g~-I~vwd~~~~~~~----~~------~~~~h~~~V~~l~~sp~~~-~l~s~s~dg~v~iwd~~~~~-~~~~~ 155 (612)
.++-+.+|. |..||++.-... .. +.........++.|+|.-. ..+.+..|+.|++.-+.... .+..+
T Consensus 116 ~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~ 195 (1405)
T KOG3630|consen 116 VVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSF 195 (1405)
T ss_pred EEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhccc
Confidence 344444455 889998753211 01 1111223456788888543 35677788888887764322 22222
Q ss_pred ecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecC----CCCEEEEEEeeCCcEEEEE
Q 007234 156 RASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGH----PGAVRFMTFSDNGKYVLSS 217 (612)
Q Consensus 156 ~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h----~~~v~~l~~sp~~~~l~s~ 217 (612)
. .....+|++|+|.|+.++.|. |++.-|-. +.+....+++. ...|.+++|-..-.++++-
T Consensus 196 p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P-~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy 261 (1405)
T KOG3630|consen 196 P-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEP-SLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVVY 261 (1405)
T ss_pred C-cccceeeEEeccccceeeEecCCCeEEEeec-ccceeecccCCCcCCCcceeEEEEecceeEEEEe
Confidence 2 345789999999999999998 78777754 33333333321 3678999998776666654
No 435
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.72 E-value=8.8 Score=39.38 Aligned_cols=130 Identities=9% Similarity=0.142 Sum_probs=84.0
Q ss_pred EEEEECCCcEEEEEcCC--CeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCcee----EEEecCCCCe
Q 007234 89 LVLGTGGGDVLALAVSA--GQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLL----GKFRASTKGI 162 (612)
Q Consensus 89 l~~gs~~g~I~vwd~~~--~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~----~~~~~~~~~v 162 (612)
.+.+..+|.+.-|-+.. ......+.....++|.++.|++|++.+++--.|++|.+++....+.. .+.+.....|
T Consensus 36 qlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~I 115 (657)
T KOG2377|consen 36 QLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANI 115 (657)
T ss_pred eEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCccee
Confidence 45555556655555432 22322333345679999999999999999999999999997543322 2233344468
Q ss_pred eEEEECCCCCEEEEeCCeEEEEEcCCC-eeEEEEecCCCCEEEEEEeeCCcEEEEEE
Q 007234 163 SCMAVSSDGKMLATAAGQLKTFNCSDH-KKMQKFSGHPGAVRFMTFSDNGKYVLSSA 218 (612)
Q Consensus 163 ~~l~~spdg~~l~~~~g~i~lwd~~~~-~~~~~~~~h~~~v~~l~~sp~~~~l~s~s 218 (612)
....|+.+....+....-+-+|-+... +.++..+.|...|.-..|.++-+.++.++
T Consensus 116 lGF~W~~s~e~A~i~~~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 116 LGFCWTSSTEIAFITDQGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLST 172 (657)
T ss_pred EEEEEecCeeEEEEecCCeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeec
Confidence 889998664444444444555654433 23555677888898889999887555443
No 436
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=90.53 E-value=6.8 Score=43.91 Aligned_cols=27 Identities=26% Similarity=0.395 Sum_probs=19.8
Q ss_pred CeEEEEEecCCCEEEEEecCCcEEEEEC
Q 007234 119 GVSAISFATHGSCIYSAGADGMVCEIDP 146 (612)
Q Consensus 119 ~V~~l~~sp~~~~l~s~s~dg~v~iwd~ 146 (612)
.|..+.++|+|.+++..|..|. .+..+
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~v-~V~~L 112 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRGV-VVLEL 112 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCcE-EEEEe
Confidence 5778889999999888887654 44433
No 437
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=90.47 E-value=0.89 Score=30.03 Aligned_cols=32 Identities=31% Similarity=0.433 Sum_probs=25.3
Q ss_pred cccceeEEEEcCCC---CEEEEEeCCCcEEEEECCCC
Q 007234 4 SNIRDILTSFSPAL---DYFAICSGDARIKIWDTLKG 37 (612)
Q Consensus 4 ~~V~~l~~~fspdg---~~las~s~dg~i~iwd~~~~ 37 (612)
++||++ .|||+. ++||.+-.-|.|.|+|++++
T Consensus 1 GAvR~~--kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCC--KFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEE--EeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 357756 999844 58888888899999999853
No 438
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=90.17 E-value=21 Score=35.35 Aligned_cols=134 Identities=19% Similarity=0.263 Sum_probs=80.2
Q ss_pred cEEEEEcCCCeEEEEeccC-----CCCCeEEEEEecCC-----CEEEEE-ecCCcEEEEECCCCceeEEEecC-------
Q 007234 97 DVLALAVSAGQLKWRLSDC-----HPGGVSAISFATHG-----SCIYSA-GADGMVCEIDPLTGSLLGKFRAS------- 158 (612)
Q Consensus 97 ~I~vwd~~~~~~~~~~~~~-----h~~~V~~l~~sp~~-----~~l~s~-s~dg~v~iwd~~~~~~~~~~~~~------- 158 (612)
+|.+||+.+++.++++.-. ..+.+..+.+.... .+++.+ +..+-+.++|+.+++.-+.+..+
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 4778899998877665321 24567888887622 244433 34467999999988765544321
Q ss_pred ------------CCCeeEEEECC---CCCEEEEeC-CeEEEEEcCCC--------------eeEEEEecC-CCCEEEEEE
Q 007234 159 ------------TKGISCMAVSS---DGKMLATAA-GQLKTFNCSDH--------------KKMQKFSGH-PGAVRFMTF 207 (612)
Q Consensus 159 ------------~~~v~~l~~sp---dg~~l~~~~-g~i~lwd~~~~--------------~~~~~~~~h-~~~v~~l~~ 207 (612)
...+..++.+| +|+.|.-.. ..-++|.+.+. +.+..+ |. .+....+++
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~l-G~k~~~s~g~~~ 193 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDL-GDKGSQSDGMAI 193 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEE-EE---SECEEEE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceec-cccCCCCceEEE
Confidence 12366677765 777777665 44444443221 112222 22 245667889
Q ss_pred eeCCcEEEEEEcCCCeEEEEEcCCC
Q 007234 208 SDNGKYVLSSAVGERYIALWRTDGV 232 (612)
Q Consensus 208 sp~~~~l~s~s~~d~~i~vwd~~~~ 232 (612)
.++|..+++-- ..+.|..|+..+.
T Consensus 194 D~~G~ly~~~~-~~~aI~~w~~~~~ 217 (287)
T PF03022_consen 194 DPNGNLYFTDV-EQNAIGCWDPDGP 217 (287)
T ss_dssp ETTTEEEEEEC-CCTEEEEEETTTS
T ss_pred CCCCcEEEecC-CCCeEEEEeCCCC
Confidence 99998776654 7889999998874
No 439
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=90.04 E-value=16 Score=37.60 Aligned_cols=100 Identities=14% Similarity=0.269 Sum_probs=59.0
Q ss_pred CCeEEEEEecCCCEEEEEe-----------cCC-cEEEEECCC--Cc--eeEEEecCCCCeeEEEECCCCCEEEEeCCeE
Q 007234 118 GGVSAISFATHGSCIYSAG-----------ADG-MVCEIDPLT--GS--LLGKFRASTKGISCMAVSSDGKMLATAAGQL 181 (612)
Q Consensus 118 ~~V~~l~~sp~~~~l~s~s-----------~dg-~v~iwd~~~--~~--~~~~~~~~~~~v~~l~~spdg~~l~~~~g~i 181 (612)
.....++|.++|+.+++-. ..+ .|.+++-.. |+ ....+...-.....+++.++| ++++....|
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~~~~~i 92 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVATPPDI 92 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEeCCCeE
Confidence 4567889999988666542 223 677776443 32 233444444456889999998 555444666
Q ss_pred EEE-EcCC-------Cee-EEEEec----CCCCEEEEEEeeCCcEEEEEE
Q 007234 182 KTF-NCSD-------HKK-MQKFSG----HPGAVRFMTFSDNGKYVLSSA 218 (612)
Q Consensus 182 ~lw-d~~~-------~~~-~~~~~~----h~~~v~~l~~sp~~~~l~s~s 218 (612)
..| |... .+. +..+.. +......+.|.|||.+.++.+
T Consensus 93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence 545 5432 111 222322 134467899999998766655
No 440
>PRK13684 Ycf48-like protein; Provisional
Probab=89.52 E-value=25 Score=35.60 Aligned_cols=109 Identities=17% Similarity=0.141 Sum_probs=68.2
Q ss_pred CCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEec----CCCCeeEEEECCCCCEEEEeC-CeEEEEEcCCCe
Q 007234 116 HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA----STKGISCMAVSSDGKMLATAA-GQLKTFNCSDHK 190 (612)
Q Consensus 116 h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~----~~~~v~~l~~spdg~~l~~~~-g~i~lwd~~~~~ 190 (612)
-...++++.+.++++.++++ ..|.+++=....|..-..... ....+..+.+.|++..++++. |.+. .....++
T Consensus 213 ~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~-~S~d~G~ 290 (334)
T PRK13684 213 SSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGGNGTLL-VSKDGGK 290 (334)
T ss_pred CcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCCEEEEcCCCeEE-EeCCCCC
Confidence 34678999999998866654 567665433344433222221 123578899999988888877 6554 4445554
Q ss_pred eEEEEe---cCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEE
Q 007234 191 KMQKFS---GHPGAVRFMTFSDNGKYVLSSAVGERYIALWR 228 (612)
Q Consensus 191 ~~~~~~---~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd 228 (612)
.-.... +-......+.|..+++.++++ ..|.|..|+
T Consensus 291 tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G--~~G~il~~~ 329 (334)
T PRK13684 291 TWEKDPVGEEVPSNFYKIVFLDPEKGFVLG--QRGVLLRYV 329 (334)
T ss_pred CCeECCcCCCCCcceEEEEEeCCCceEEEC--CCceEEEec
Confidence 433332 223457788888777776654 478887765
No 441
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=89.00 E-value=2.6 Score=43.68 Aligned_cols=84 Identities=15% Similarity=0.225 Sum_probs=55.1
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccc------
Q 007234 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR------ 82 (612)
Q Consensus 9 l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~------ 82 (612)
.+++.+|++++.|+...-|+|.++|+.++..++.+++-.+. .+.|........+
T Consensus 311 ~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdA--------------------qc~wi~~~~~~~~~~~~~~ 370 (415)
T PF14655_consen 311 ESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDA--------------------QCGWIEVPEEGDRDRSNSN 370 (415)
T ss_pred EEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccc--------------------eEEEEEeeccccccccccc
Confidence 45699999999888877899999999999999988754332 2233322111100
Q ss_pred ------ccCCcEEEEEECCCcEEEEEcCCCeEEEEe
Q 007234 83 ------KLGSSLLVLGTGGGDVLALAVSAGQLKWRL 112 (612)
Q Consensus 83 ------~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~ 112 (612)
+...-+++-+-.-|.|.||.+++|..+..+
T Consensus 371 ~~~~~~~~~l~LvIyaprRg~lEvW~~~~g~Rv~a~ 406 (415)
T PF14655_consen 371 SPKSSSRFALFLVIYAPRRGILEVWSMRQGPRVAAF 406 (415)
T ss_pred ccCCCCcceEEEEEEeccCCeEEEEecCCCCEEEEE
Confidence 001223445667788999998877665444
No 442
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=88.78 E-value=5.4 Score=43.68 Aligned_cols=73 Identities=15% Similarity=0.169 Sum_probs=46.7
Q ss_pred CcEEEEEECCCcEEEEEcCC----CeEEEEe-ccC--------------------CCCCeEEEEEec----CCCEEEEEe
Q 007234 86 SSLLVLGTGGGDVLALAVSA----GQLKWRL-SDC--------------------HPGGVSAISFAT----HGSCIYSAG 136 (612)
Q Consensus 86 ~~~l~~gs~~g~I~vwd~~~----~~~~~~~-~~~--------------------h~~~V~~l~~sp----~~~~l~s~s 136 (612)
...++++..||.+....... +...... ... -...+..+++++ +..++++.+
T Consensus 158 ~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl~ 237 (547)
T PF11715_consen 158 EANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTLS 237 (547)
T ss_dssp SSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEEE
T ss_pred CCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEEe
Confidence 66788899999988777664 2221111 110 123455666666 677899999
Q ss_pred cCCcEEEEECCCCceeEEEecC
Q 007234 137 ADGMVCEIDPLTGSLLGKFRAS 158 (612)
Q Consensus 137 ~dg~v~iwd~~~~~~~~~~~~~ 158 (612)
.|+++|+||+.+++++.+....
T Consensus 238 ~D~~LRiW~l~t~~~~~~~~~~ 259 (547)
T PF11715_consen 238 RDHTLRIWSLETGQCLATIDLL 259 (547)
T ss_dssp TTSEEEEEETTTTCEEEEEETT
T ss_pred CCCeEEEEECCCCeEEEEeccc
Confidence 9999999999999998887654
No 443
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=88.75 E-value=3.4 Score=39.00 Aligned_cols=29 Identities=14% Similarity=0.259 Sum_probs=24.0
Q ss_pred EecCCCEEEEEecCCcEEEEECCCCceeE
Q 007234 125 FATHGSCIYSAGADGMVCEIDPLTGSLLG 153 (612)
Q Consensus 125 ~sp~~~~l~s~s~dg~v~iwd~~~~~~~~ 153 (612)
+..+++++++...+|.+++||+.+++.+.
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~ 46 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVL 46 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeecc
Confidence 44568899999999999999999886643
No 444
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=88.41 E-value=4.1 Score=38.92 Aligned_cols=141 Identities=13% Similarity=0.116 Sum_probs=75.1
Q ss_pred EEEECCCCceeEEEecCCCCeeEEEECCCCCEEEEeC-----CeEEEEEcCC---CeeEEEEe---cCCCCEEEEEEeeC
Q 007234 142 CEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-----GQLKTFNCSD---HKKMQKFS---GHPGAVRFMTFSDN 210 (612)
Q Consensus 142 ~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~-----g~i~lwd~~~---~~~~~~~~---~h~~~v~~l~~sp~ 210 (612)
.+||+.+++....-......+.+-.+-|||+++.+|+ ..+++++..+ .....+.. .....-.....-||
T Consensus 49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~D 128 (243)
T PF07250_consen 49 VEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPD 128 (243)
T ss_pred EEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCC
Confidence 4788887754322111223555567889999999988 3688888654 11111110 11122233455689
Q ss_pred CcEEEEEEcCCCeEEEEEcCCCccccceeeEeec-----CCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcc
Q 007234 211 GKYVLSSAVGERYIALWRTDGVKKQSASCVLAME-----HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE 285 (612)
Q Consensus 211 ~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~ 285 (612)
|+.++.+|....+...|.-....... .....+. ......-.+... |+|+.++.+..+. .+||..+.+
T Consensus 129 G~vlIvGG~~~~t~E~~P~~~~~~~~-~~~~~l~~~~~~~~~nlYP~~~ll-----PdG~lFi~an~~s--~i~d~~~n~ 200 (243)
T PF07250_consen 129 GRVLIVGGSNNPTYEFWPPKGPGPGP-VTLPFLSQTSDTLPNNLYPFVHLL-----PDGNLFIFANRGS--IIYDYKTNT 200 (243)
T ss_pred CCEEEEeCcCCCcccccCCccCCCCc-eeeecchhhhccCccccCceEEEc-----CCCCEEEEEcCCc--EEEeCCCCe
Confidence 99999988644455555543221110 0000010 111112223333 9999998888754 456877776
Q ss_pred eeccc
Q 007234 286 ELRNT 290 (612)
Q Consensus 286 ~~~~~ 290 (612)
.++..
T Consensus 201 v~~~l 205 (243)
T PF07250_consen 201 VVRTL 205 (243)
T ss_pred EEeeC
Confidence 55443
No 445
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.25 E-value=5.3 Score=46.32 Aligned_cols=144 Identities=18% Similarity=0.313 Sum_probs=82.3
Q ss_pred eCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEECCCcEEEEEc
Q 007234 24 SGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAV 103 (612)
Q Consensus 24 s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~ 103 (612)
+-|+.+.+|+..++...+.+.+....+..+..-.+ ..|-.-..+ ..++++++ --.|.++-+
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkP-kpgvFv~~I-----------------qhlLvvaT-~~ei~ilgV 156 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKP-KPGVFVPEI-----------------QHLLVVAT-PVEIVILGV 156 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecC-CCCcchhhh-----------------heeEEecc-cceEEEEEE
Confidence 35889999999998888888877766665554444 222221111 22233333 333444333
Q ss_pred CC----CeEE-----EEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECC--CC---c-e----------------e
Q 007234 104 SA----GQLK-----WRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL--TG---S-L----------------L 152 (612)
Q Consensus 104 ~~----~~~~-----~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~--~~---~-~----------------~ 152 (612)
.- +..- .++ ......|+|+....+|+.|++| .||.|+-.-.+ .| + + +
T Consensus 157 ~~~~~~~~~~~f~~~~~i-~~dg~~V~~I~~t~nGRIF~~G-~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~ 234 (1311)
T KOG1900|consen 157 SFDEFTGELSIFNTSFKI-SVDGVSVNCITYTENGRIFFAG-RDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSL 234 (1311)
T ss_pred EeccccCcccccccceee-ecCCceEEEEEeccCCcEEEee-cCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhh
Confidence 21 1110 011 1124568899877788766665 66655433221 11 1 1 1
Q ss_pred EEEe-cCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCC
Q 007234 153 GKFR-ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSD 188 (612)
Q Consensus 153 ~~~~-~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~ 188 (612)
-.+. .+..+|..++....-..+.+-+ |+|.+||+..
T Consensus 235 ~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 235 LSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred hcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 1122 3456899999998777887777 9999999976
No 446
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=87.61 E-value=17 Score=31.01 Aligned_cols=107 Identities=16% Similarity=0.225 Sum_probs=66.7
Q ss_pred EEEecCCCEEEEEecCCcEEEEECCCC--------ceeEEEecCCCCeeEEEECC-----CCCEEEEeC-CeEEEEEcCC
Q 007234 123 ISFATHGSCIYSAGADGMVCEIDPLTG--------SLLGKFRASTKGISCMAVSS-----DGKMLATAA-GQLKTFNCSD 188 (612)
Q Consensus 123 l~~sp~~~~l~s~s~dg~v~iwd~~~~--------~~~~~~~~~~~~v~~l~~sp-----dg~~l~~~~-g~i~lwd~~~ 188 (612)
-.|......|++++.-|+|.+++.... ..+..+. -...|++++-.+ +...|+.|+ ..+..||+..
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~ 82 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVEN 82 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEeccceEEEEEccc
Confidence 345555567888888899999986533 2344444 345677776443 456788888 8999999987
Q ss_pred CeeEEEEecCCCCEEEEEEee----CCcEEEEEEcCCCeEEEEEcCCCc
Q 007234 189 HKKMQKFSGHPGAVRFMTFSD----NGKYVLSSAVGERYIALWRTDGVK 233 (612)
Q Consensus 189 ~~~~~~~~~h~~~v~~l~~sp----~~~~l~s~s~~d~~i~vwd~~~~~ 233 (612)
..-+..- .-...|+++.+-. +...++. | .+..|.=||....+
T Consensus 83 N~d~Fyk-e~~DGvn~i~~g~~~~~~~~l~iv-G-Gncsi~Gfd~~G~e 128 (136)
T PF14781_consen 83 NSDLFYK-EVPDGVNAIVIGKLGDIPSPLVIV-G-GNCSIQGFDYEGNE 128 (136)
T ss_pred Cchhhhh-hCccceeEEEEEecCCCCCcEEEE-C-ceEEEEEeCCCCcE
Confidence 7543221 2235677776632 2344444 4 36677777655543
No 447
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=87.54 E-value=45 Score=36.68 Aligned_cols=165 Identities=11% Similarity=0.177 Sum_probs=88.0
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEE--EeeccCCccccccccccccccccccceeEEEeeecccccccccCC
Q 007234 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQT--EFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGS 86 (612)
Q Consensus 9 l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 86 (612)
+.+.|.++++.+++....|.|.+||...+.... ..+.. .-..+.|+. -+.++... .+.
T Consensus 133 v~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~--~~~~v~ys~------------fv~~~~~~------~~~ 192 (670)
T PF10395_consen 133 VGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLK--SSINVSYSK------------FVNDFELE------NGK 192 (670)
T ss_pred EEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccc--cccceehhh------------hhcccccc------cCC
Confidence 566999999999999999999999993332221 11110 001111210 01111100 013
Q ss_pred cEEEEEEC-CCc---EEEEEc--CCCeEEEEec--cCCCCCeEEEEEec-CCCEEEEEecCCcEEEEECCCCceeEEEec
Q 007234 87 SLLVLGTG-GGD---VLALAV--SAGQLKWRLS--DCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKFRA 157 (612)
Q Consensus 87 ~~l~~gs~-~g~---I~vwd~--~~~~~~~~~~--~~h~~~V~~l~~sp-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~ 157 (612)
.++++-+. ++. .+++.+ ...... .+. ..+........|.- +|. |+-= .+++|.+|++...+..+++.-
T Consensus 193 ~~ll~v~~~~~~k~~ykL~~l~~~~~~~~-El~s~~~e~~~~~~s~f~Y~~G~-LY~l-~~~~i~~ysip~f~~~~tI~l 269 (670)
T PF10395_consen 193 DLLLTVSQLSNSKLSYKLISLSNESSSIF-ELSSTILENFGLEDSKFCYQFGK-LYQL-SKKTISSYSIPNFQIQKTISL 269 (670)
T ss_pred ceEEEEEEcCCCcEEEEEEEeccCCcceE-EeehheeccCCcccceEEEeCCE-EEEE-eCCEEEEEEcCCceEEEEEEe
Confidence 44444444 333 678887 222222 221 11222233333433 443 3333 678999999988877666543
Q ss_pred C-----C-CCeeEEEECCCCCEEEEeCCeEEEEEcCCCeeEEEEe
Q 007234 158 S-----T-KGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFS 196 (612)
Q Consensus 158 ~-----~-~~v~~l~~spdg~~l~~~~g~i~lwd~~~~~~~~~~~ 196 (612)
. . ..+.++.--...+.|++..+.|++.|+.=...+.++.
T Consensus 270 ~~ii~~~~~~~vSl~~~s~nRvLLs~~nkIyLld~~~~siLse~~ 314 (670)
T PF10395_consen 270 PSIIDKESDDLVSLKPPSPNRVLLSVNNKIYLLDLKFESILSEFE 314 (670)
T ss_pred chhhccccccceEeecCCCCeEEEEcCCEEEEEeehhhhhhhhhh
Confidence 2 1 2344554434566777777999999987555554443
No 448
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=87.36 E-value=2.3 Score=27.36 Aligned_cols=34 Identities=18% Similarity=0.401 Sum_probs=23.3
Q ss_pred EEecCCCCEEEEEEeeCCcEEEEEEcCC--CeEEEE
Q 007234 194 KFSGHPGAVRFMTFSDNGKYVLSSAVGE--RYIALW 227 (612)
Q Consensus 194 ~~~~h~~~v~~l~~sp~~~~l~s~s~~d--~~i~vw 227 (612)
.+......-....|+|||+.|+.++..+ |.-.||
T Consensus 3 ~~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 3 QLTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp EES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CcccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3444556677889999999988887666 665555
No 449
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.27 E-value=36 Score=35.17 Aligned_cols=106 Identities=17% Similarity=0.195 Sum_probs=64.6
Q ss_pred CcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccc
Q 007234 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (612)
Q Consensus 3 s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (612)
.++|+++ .||+|.+.||.--.|.+|.+++....+....+. + .+......+-...|...
T Consensus 66 ~G~I~SI--kFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~-~-------------~ck~k~~~IlGF~W~~s------ 123 (657)
T KOG2377|consen 66 KGEIKSI--KFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYT-Q-------------ECKTKNANILGFCWTSS------ 123 (657)
T ss_pred CCceeEE--EeccCcceEEEEecCceEEEEecCCCchhhHHH-H-------------HhccCcceeEEEEEecC------
Confidence 4689777 999999999999999999999885443322221 0 01111223445566553
Q ss_pred ccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEE
Q 007234 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSA 135 (612)
Q Consensus 83 ~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~ 135 (612)
.-++.-+..|. -+|-+.......++.+.|...|.-..|.++.+.++-+
T Consensus 124 ----~e~A~i~~~G~-e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~ 171 (657)
T KOG2377|consen 124 ----TEIAFITDQGI-EFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLS 171 (657)
T ss_pred ----eeEEEEecCCe-EEEEEchhhhhhhhhhhcccCccEEEEccccceEeee
Confidence 34566655553 3343332222223446788899999999988764443
No 450
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=86.79 E-value=31 Score=33.26 Aligned_cols=185 Identities=13% Similarity=0.082 Sum_probs=107.8
Q ss_pred CcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEE-E--ecCCCCe
Q 007234 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK-F--RASTKGI 162 (612)
Q Consensus 86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~-~--~~~~~~v 162 (612)
+..-+.+...|.|--.|..+|+.... .-+....-..+..-|||..-++-+.. -|.-.|-++.+..+- + +......
T Consensus 73 G~VWft~qg~gaiGhLdP~tGev~~y-pLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~lp~~~a~~nl 150 (353)
T COG4257 73 GAVWFTAQGTGAIGHLDPATGEVETY-PLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPLPLEHADANL 150 (353)
T ss_pred CceEEecCccccceecCCCCCceEEE-ecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeecccccCCCcc
Confidence 55666777777788888888887633 33455667788888888765554333 566667655543221 1 2223467
Q ss_pred eEEEECCCCCEEEEeC-CeEEEEEcCCCeeEEEEecC-CCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceee
Q 007234 163 SCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGH-PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV 240 (612)
Q Consensus 163 ~~l~~spdg~~l~~~~-g~i~lwd~~~~~~~~~~~~h-~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~ 240 (612)
....|.+.|++-+++. |----.|..++ .+..+... ...-+.|+..|+|...+++- .+..|-..|...+... +
T Consensus 151 et~vfD~~G~lWFt~q~G~yGrLdPa~~-~i~vfpaPqG~gpyGi~atpdGsvwyasl-agnaiaridp~~~~ae----v 224 (353)
T COG4257 151 ETAVFDPWGNLWFTGQIGAYGRLDPARN-VISVFPAPQGGGPYGICATPDGSVWYASL-AGNAIARIDPFAGHAE----V 224 (353)
T ss_pred cceeeCCCccEEEeeccccceecCcccC-ceeeeccCCCCCCcceEECCCCcEEEEec-cccceEEcccccCCcc----e
Confidence 8899999999999886 21111121111 12223221 22346788899998776653 5677777776665322 1
Q ss_pred EeecCC-ceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCC
Q 007234 241 LAMEHP-AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN 283 (612)
Q Consensus 241 ~~~~~~-~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~ 283 (612)
+..... ......++.+ +.|+.-++....+.++-||..+
T Consensus 225 ~p~P~~~~~gsRriwsd-----pig~~wittwg~g~l~rfdPs~ 263 (353)
T COG4257 225 VPQPNALKAGSRRIWSD-----PIGRAWITTWGTGSLHRFDPSV 263 (353)
T ss_pred ecCCCcccccccccccC-----ccCcEEEeccCCceeeEeCccc
Confidence 111111 1222333333 6777777766677777776543
No 451
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=86.57 E-value=3.2 Score=27.50 Aligned_cols=31 Identities=23% Similarity=0.284 Sum_probs=25.4
Q ss_pred CCeEEEEEecCC---CEEEEEecCCcEEEEECCC
Q 007234 118 GGVSAISFATHG---SCIYSAGADGMVCEIDPLT 148 (612)
Q Consensus 118 ~~V~~l~~sp~~---~~l~s~s~dg~v~iwd~~~ 148 (612)
+.|.++.|+|++ .+|+-+-.-|.|.++|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 468999999854 4777777889999999985
No 452
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=86.55 E-value=67 Score=37.88 Aligned_cols=38 Identities=24% Similarity=0.257 Sum_probs=23.7
Q ss_pred ccCCCeEEEEecCCCceEeccccceeeecceeeecceeecc
Q 007234 347 VNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNRVTALD 387 (612)
Q Consensus 347 ~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~~~~~~~~~ 387 (612)
.|.+...++|+||||...++ - .+..|+..+...+..++
T Consensus 659 A~lnsp~alaVsPdg~v~IA-D--~gN~rIr~Vs~~~~~~~ 696 (1899)
T KOG4659|consen 659 AKLNSPYALAVSPDGDVIIA-D--SGNSRIRKVSARMAKYD 696 (1899)
T ss_pred cccCCcceEEECCCCcEEEe-c--CCchhhhhhhhcccccC
Confidence 46667899999999998733 2 33445554433344443
No 453
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=86.11 E-value=76 Score=37.11 Aligned_cols=141 Identities=16% Similarity=0.197 Sum_probs=78.0
Q ss_pred CcEEEEEEC---------CCcEEEEEcCC-----Ce-----EEE-EeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEE
Q 007234 86 SSLLVLGTG---------GGDVLALAVSA-----GQ-----LKW-RLSDCHPGGVSAISFATHGSCIYSAGADGMVCEID 145 (612)
Q Consensus 86 ~~~l~~gs~---------~g~I~vwd~~~-----~~-----~~~-~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd 145 (612)
..++++|+. -|.++|||+-. |+ .+. -+.+...++|..++= -+| +|++| ....|.+|+
T Consensus 1046 k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavce-V~G-~l~~~-~GqKI~v~~ 1122 (1366)
T KOG1896|consen 1046 KPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCE-VRG-HLLSS-QGQKIIVRK 1122 (1366)
T ss_pred cceEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEE-ecc-EEEEc-cCcEEEEEE
Confidence 678888875 47799998732 21 121 222445677777763 245 45555 456799999
Q ss_pred CC-CCceeEE-EecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCC-eeEEEEec--CCCCEEEEEEeeCCc--EEEE
Q 007234 146 PL-TGSLLGK-FRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDH-KKMQKFSG--HPGAVRFMTFSDNGK--YVLS 216 (612)
Q Consensus 146 ~~-~~~~~~~-~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~-~~~~~~~~--h~~~v~~l~~sp~~~--~l~s 216 (612)
++ ....+.. |- .-++.-....--.++++.|+ ..|.+.-.+.. ..+.-+.. ..-.+.+..|--||. ++++
T Consensus 1123 l~r~~~ligVaFi--D~~~yv~s~~~vknlIl~gDV~ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~flv 1200 (1366)
T KOG1896|consen 1123 LDRDSELIGVAFI--DLPLYVHSMKVVKNLILAGDVMKSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLV 1200 (1366)
T ss_pred eccCCcceeeEEe--ccceeEEehhhhhhheehhhhhhceEEEEEccCceEEEEeecCCchhhceeeeeEEcCCeeEEEE
Confidence 84 3333322 21 11222223333356777777 55665554432 22222221 223577888887775 3444
Q ss_pred EEcCCCeEEEEEcCCC
Q 007234 217 SAVGERYIALWRTDGV 232 (612)
Q Consensus 217 ~s~~d~~i~vwd~~~~ 232 (612)
+ ..||.|.++-....
T Consensus 1201 s-Da~rNi~vy~Y~Pe 1215 (1366)
T KOG1896|consen 1201 S-DADRNIHVYMYAPE 1215 (1366)
T ss_pred E-cCCCcEEEEEeCCC
Confidence 4 47999988865443
No 454
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=85.80 E-value=4.2 Score=38.34 Aligned_cols=61 Identities=16% Similarity=0.207 Sum_probs=41.5
Q ss_pred CcEEEEEECCCcEEEEEcCCCeEEEEe------cc-------CCCCCeEEEEEecCCCEEEEEecCCcEEEEECC
Q 007234 86 SSLLVLGTGGGDVLALAVSAGQLKWRL------SD-------CHPGGVSAISFATHGSCIYSAGADGMVCEIDPL 147 (612)
Q Consensus 86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~------~~-------~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~ 147 (612)
++++++-+.+|.+++||+.+++.+..- .. .....|..+.++.+|.-+++-+ +|..+.||..
T Consensus 22 ~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 22 GSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD 95 (219)
T ss_pred CCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence 788999999999999999998775322 11 2345566666766665555543 4566666643
No 455
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=85.61 E-value=49 Score=34.42 Aligned_cols=143 Identities=15% Similarity=0.131 Sum_probs=73.9
Q ss_pred EEEEEecCCCEEEEEecCCcEE-EEECCCCcee-EEE-ecCCCCeeEEEECCCCCEEEEeC-CeEEEEEcCCCe-----e
Q 007234 121 SAISFATHGSCIYSAGADGMVC-EIDPLTGSLL-GKF-RASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHK-----K 191 (612)
Q Consensus 121 ~~l~~sp~~~~l~s~s~dg~v~-iwd~~~~~~~-~~~-~~~~~~v~~l~~spdg~~l~~~~-g~i~lwd~~~~~-----~ 191 (612)
..+..+++|.+++.+ ..|.+. -|| .|+.. ... ......++++.+.+++.+++++. |.+. +....++ .
T Consensus 242 ~~v~~~~dG~~~~vg-~~G~~~~s~d--~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G~l~-~S~d~G~~~~~~~ 317 (398)
T PLN00033 242 STVNRSPDGDYVAVS-SRGNFYLTWE--PGQPYWQPHNRASARRIQNMGWRADGGLWLLTRGGGLY-VSKGTGLTEEDFD 317 (398)
T ss_pred eeEEEcCCCCEEEEE-CCccEEEecC--CCCcceEEecCCCccceeeeeEcCCCCEEEEeCCceEE-EecCCCCcccccc
Confidence 334556676655555 344433 344 23221 111 22344789999999999998888 5543 3444443 2
Q ss_pred EEEEec--CCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeec-CCceeEEeEEecCCccCCCCcEEE
Q 007234 192 MQKFSG--HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME-HPAVFMDCRCIDNGGVDDAGLYVL 268 (612)
Q Consensus 192 ~~~~~~--h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~ 268 (612)
...... ....+..+.|.+++..++++ ..|.+... .+.++.= ....... -..... .+.|. ++ ....
T Consensus 318 f~~~~~~~~~~~l~~v~~~~d~~~~a~G--~~G~v~~s-~D~G~tW--~~~~~~~~~~~~ly-~v~f~-----~~-~~g~ 385 (398)
T PLN00033 318 FEEADIKSRGFGILDVGYRSKKEAWAAG--GSGILLRS-TDGGKSW--KRDKGADNIAANLY-SVKFF-----DD-KKGF 385 (398)
T ss_pred eeecccCCCCcceEEEEEcCCCcEEEEE--CCCcEEEe-CCCCcce--eEccccCCCCccee-EEEEc-----CC-CceE
Confidence 232221 12348889999888766654 47766554 3333311 0111001 112233 44443 33 4455
Q ss_pred EEecCCcEEEE
Q 007234 269 AISETGVCYIW 279 (612)
Q Consensus 269 t~s~dg~i~iw 279 (612)
+.+.+|.|.-|
T Consensus 386 ~~G~~G~il~~ 396 (398)
T PLN00033 386 VLGNDGVLLRY 396 (398)
T ss_pred EEeCCcEEEEe
Confidence 66677877655
No 456
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=85.47 E-value=3.4 Score=26.83 Aligned_cols=31 Identities=16% Similarity=0.255 Sum_probs=24.7
Q ss_pred CCCCEEEEEe-CCCcEEEEECCCCcEEEEeec
Q 007234 15 PALDYFAICS-GDARIKIWDTLKGQVQTEFAD 45 (612)
Q Consensus 15 pdg~~las~s-~dg~i~iwd~~~~~~~~~~~~ 45 (612)
||+++|.++. .+++|.++|..+++.+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 6788776655 478999999999998887764
No 457
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=85.20 E-value=27 Score=38.72 Aligned_cols=108 Identities=11% Similarity=0.117 Sum_probs=66.5
Q ss_pred eEEEEEec--CCCEEEEEecCCcEEEEECCC-------C-------------ceeEEEecCCCCeeEEEEC--CCCCEEE
Q 007234 120 VSAISFAT--HGSCIYSAGADGMVCEIDPLT-------G-------------SLLGKFRASTKGISCMAVS--SDGKMLA 175 (612)
Q Consensus 120 V~~l~~sp--~~~~l~s~s~dg~v~iwd~~~-------~-------------~~~~~~~~~~~~v~~l~~s--pdg~~l~ 175 (612)
|+-+.... +...|+.|..||.|.+|.+++ . ++...+. ....+++++++ ...+++|
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIA 181 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIA 181 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEE
Confidence 44444332 345688999999999996521 0 0122222 23478999998 8888999
Q ss_pred EeC--CeEEEEEcCC--Cee-EEEEecCCCCEEEEEEeeCC-----c-EEEEEEcCCCeEEEEEc
Q 007234 176 TAA--GQLKTFNCSD--HKK-MQKFSGHPGAVRFMTFSDNG-----K-YVLSSAVGERYIALWRT 229 (612)
Q Consensus 176 ~~~--g~i~lwd~~~--~~~-~~~~~~h~~~v~~l~~sp~~-----~-~l~s~s~~d~~i~vwd~ 229 (612)
+++ ..|.||-... .+. ...-..|...|.+++|.++. . .+++++ -.|.+.+|++
T Consensus 182 VSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~d-I~G~v~~~~I 245 (717)
T PF08728_consen 182 VSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATD-ISGEVWTFKI 245 (717)
T ss_pred EecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEe-ccCcEEEEEE
Confidence 888 4555554332 221 11111255678899998653 2 455554 6899988887
No 458
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=85.14 E-value=1.6 Score=48.12 Aligned_cols=104 Identities=13% Similarity=0.187 Sum_probs=54.8
Q ss_pred CcEEEEEcC--CCeEEE----EeccCCCCCeEEEEEec---CCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEEE
Q 007234 96 GDVLALAVS--AGQLKW----RLSDCHPGGVSAISFAT---HGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMA 166 (612)
Q Consensus 96 g~I~vwd~~--~~~~~~----~~~~~h~~~V~~l~~sp---~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~ 166 (612)
|...||++. .|+... +........+.-+.|.| +.-++..+-.++.|++.++.+... ..|+.|...+..++
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a 231 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMA 231 (1283)
T ss_pred hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHH
Confidence 667888775 343322 22222333444444444 555556666777888776654332 33444665655555
Q ss_pred ECCCCCEEEEeCCeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcC
Q 007234 167 VSSDGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD 230 (612)
Q Consensus 167 ~spdg~~l~~~~g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~ 230 (612)
|-..|-+++.+ .||||+.++..+ .||.++.|.+.
T Consensus 232 ~~~~g~~~l~~-----------------------------lSpDGtv~a~a~-~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 232 FFAEGVLKLAS-----------------------------LSPDGTVFAWAI-SDGSVGFYQIY 265 (1283)
T ss_pred HHhhchhhhee-----------------------------eCCCCcEEEEee-cCCccceeeee
Confidence 44333221110 567777666665 47766666653
No 459
>PLN02193 nitrile-specifier protein
Probab=85.04 E-value=58 Score=34.82 Aligned_cols=145 Identities=11% Similarity=0.041 Sum_probs=67.9
Q ss_pred CcEEEEEECC-------CcEEEEEcCCCeEEEEeccC-CCC--CeEEEEEecCCCEEEEEecC-----CcEEEEECCCCc
Q 007234 86 SSLLVLGTGG-------GDVLALAVSAGQLKWRLSDC-HPG--GVSAISFATHGSCIYSAGAD-----GMVCEIDPLTGS 150 (612)
Q Consensus 86 ~~~l~~gs~~-------g~I~vwd~~~~~~~~~~~~~-h~~--~V~~l~~sp~~~~l~s~s~d-----g~v~iwd~~~~~ 150 (612)
+.+++.|+.+ ..+.+||+.+.+-...-..+ ... ........-++..++.|+.+ ..+.++|+.+.+
T Consensus 176 ~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~ 255 (470)
T PLN02193 176 NKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNE 255 (470)
T ss_pred CEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCE
Confidence 5556666643 23778898876543111000 001 11111112245556666654 358888987754
Q ss_pred eeEE--Eec-C-CCCeeEEEECCCCCEEEEeC-------CeEEEEEcCCCeeEEEEecC----CCCEEEEEEeeCCcEEE
Q 007234 151 LLGK--FRA-S-TKGISCMAVSSDGKMLATAA-------GQLKTFNCSDHKKMQKFSGH----PGAVRFMTFSDNGKYVL 215 (612)
Q Consensus 151 ~~~~--~~~-~-~~~v~~l~~spdg~~l~~~~-------g~i~lwd~~~~~~~~~~~~h----~~~v~~l~~sp~~~~l~ 215 (612)
-... ... . ...-.+++. -++++.+.|+ ..+..||+.+.+-.. +... ..........-+++.++
T Consensus 256 W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~-~~~~~~~~~~R~~~~~~~~~gkiyv 333 (470)
T PLN02193 256 WKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKKWFH-CSTPGDSFSIRGGAGLEVVQGKVWV 333 (470)
T ss_pred EEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCEEEe-CCCCCCCCCCCCCcEEEEECCcEEE
Confidence 3221 100 1 111122222 2456666665 257788887765321 1110 00101111223566666
Q ss_pred EEEcCC----CeEEEEEcCCCc
Q 007234 216 SSAVGE----RYIALWRTDGVK 233 (612)
Q Consensus 216 s~s~~d----~~i~vwd~~~~~ 233 (612)
.++ .+ ..+.+||+.+.+
T Consensus 334 iGG-~~g~~~~dv~~yD~~t~~ 354 (470)
T PLN02193 334 VYG-FNGCEVDDVHYYDPVQDK 354 (470)
T ss_pred EEC-CCCCccCceEEEECCCCE
Confidence 665 34 357888887764
No 460
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=85.01 E-value=45 Score=33.52 Aligned_cols=103 Identities=12% Similarity=0.119 Sum_probs=51.0
Q ss_pred CCCEEEEEecC-----CcEEEEECCCCcee---EEEecCCCCe--eEEEECCCCCEEEEeC-------CeEEEEEcCCCe
Q 007234 128 HGSCIYSAGAD-----GMVCEIDPLTGSLL---GKFRASTKGI--SCMAVSSDGKMLATAA-------GQLKTFNCSDHK 190 (612)
Q Consensus 128 ~~~~l~s~s~d-----g~v~iwd~~~~~~~---~~~~~~~~~v--~~l~~spdg~~l~~~~-------g~i~lwd~~~~~ 190 (612)
++..++.|+.+ ..+..+|+.+.+.. ..+..-..+. .+++.. ++++.+.|+ ..+..||+.+.+
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~-~~~iYv~GG~~~~~~~~~v~~yd~~~~~ 150 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK-DGTLYVGGGNRNGKPSNKSYLFNLETQE 150 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE-CCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence 45566666654 35677777665431 2221111111 122222 466666665 368889988765
Q ss_pred eEE--EEecCCCCEEEEEEeeCCcEEEEEEcCCC----eEEEEEcCCCc
Q 007234 191 KMQ--KFSGHPGAVRFMTFSDNGKYVLSSAVGER----YIALWRTDGVK 233 (612)
Q Consensus 191 ~~~--~~~~h~~~v~~l~~sp~~~~l~s~s~~d~----~i~vwd~~~~~ 233 (612)
-.. .+... ......+..-+++..+.+| .++ .+.+||..+..
T Consensus 151 W~~~~~~p~~-~r~~~~~~~~~~~iYv~GG-~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 151 WFELPDFPGE-PRVQPVCVKLQNELYVFGG-GSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred eeECCCCCCC-CCCcceEEEECCEEEEEcC-CCCccccceEEEecCCCe
Confidence 322 22211 1222233344566666665 343 24577877654
No 461
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=84.80 E-value=43 Score=33.10 Aligned_cols=191 Identities=9% Similarity=0.107 Sum_probs=92.8
Q ss_pred EEEEcCCCCEEE--EEeC----------CCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecc
Q 007234 10 LTSFSPALDYFA--ICSG----------DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVD 77 (612)
Q Consensus 10 ~~~fspdg~~la--s~s~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~ 77 (612)
.+...++|++-+ +|.- .-+|.+||+.+++.++++.-........ .....+.....+
T Consensus 5 ~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~------------s~lndl~VD~~~ 72 (287)
T PF03022_consen 5 RVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPD------------SFLNDLVVDVRD 72 (287)
T ss_dssp EEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TC------------GGEEEEEEECTT
T ss_pred EEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccc------------cccceEEEEccC
Confidence 347777776444 2321 1278899999999998886433221111 111122222211
Q ss_pred cccccccCCcEEEEEECC-CcEEEEEcCCCeEEEEeccCC-------------------CCCeEEEEEec---CCCEEEE
Q 007234 78 RKKKRKLGSSLLVLGTGG-GDVLALAVSAGQLKWRLSDCH-------------------PGGVSAISFAT---HGSCIYS 134 (612)
Q Consensus 78 ~~~~~~~~~~~l~~gs~~-g~I~vwd~~~~~~~~~~~~~h-------------------~~~V~~l~~sp---~~~~l~s 134 (612)
.. ....++.++... +.|.|+|+.+++.-+.+ ..+ ...+.+++.+| +++.|+-
T Consensus 73 ~~----~~~~~aYItD~~~~glIV~dl~~~~s~Rv~-~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf 147 (287)
T PF03022_consen 73 GN----CDDGFAYITDSGGPGLIVYDLATGKSWRVL-HNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYF 147 (287)
T ss_dssp TT----S-SEEEEEEETTTCEEEEEETTTTEEEEEE-TCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEE
T ss_pred CC----CcceEEEEeCCCcCcEEEEEccCCcEEEEe-cCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEE
Confidence 10 002455555555 45999999998764332 111 12355666655 5555655
Q ss_pred EecCCc-EEEEEC---CCC---------ceeEEEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCe---eEEEE-
Q 007234 135 AGADGM-VCEIDP---LTG---------SLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHK---KMQKF- 195 (612)
Q Consensus 135 ~s~dg~-v~iwd~---~~~---------~~~~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~---~~~~~- 195 (612)
+...+. ++--.. +.. +.+..+-........++++++|.+.++-- +.|..|+..+.- ....+
T Consensus 148 ~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~ 227 (287)
T PF03022_consen 148 HPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILA 227 (287)
T ss_dssp EETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEE
T ss_pred EeCCCCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeE
Confidence 543332 222211 111 11222211123556788899888777665 799999987621 12222
Q ss_pred ecC--CCCEEEEEEee--CCcEEEEE
Q 007234 196 SGH--PGAVRFMTFSD--NGKYVLSS 217 (612)
Q Consensus 196 ~~h--~~~v~~l~~sp--~~~~l~s~ 217 (612)
... -..+..+.+.+ +|...+.+
T Consensus 228 ~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 228 QDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp E-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred EcCceeeccceeeeccccCceEEEEE
Confidence 112 34677888888 66544443
No 462
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=84.80 E-value=53 Score=34.15 Aligned_cols=107 Identities=13% Similarity=0.119 Sum_probs=68.8
Q ss_pred CCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCc-----eeEEEec--CCCCeeEEEECCCCCEEEEeC-CeEEEEEcC
Q 007234 116 HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS-----LLGKFRA--STKGISCMAVSSDGKMLATAA-GQLKTFNCS 187 (612)
Q Consensus 116 h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~-----~~~~~~~--~~~~v~~l~~spdg~~l~~~~-g~i~lwd~~ 187 (612)
....++++.|.+++..++++ .+|.+. |....++ ....... ....+.++.+.+++..+++|. |.+... ..
T Consensus 279 ~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s-~D 355 (398)
T PLN00033 279 SARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRS-TD 355 (398)
T ss_pred CccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEe-CC
Confidence 34678999999998866655 566653 3334443 2232222 123589999999999999998 766554 34
Q ss_pred CCeeEEEEe---cCCCCEEEEEEeeCCcEEEEEEcCCCeEEEE
Q 007234 188 DHKKMQKFS---GHPGAVRFMTFSDNGKYVLSSAVGERYIALW 227 (612)
Q Consensus 188 ~~~~~~~~~---~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vw 227 (612)
.++.-.... .-....+.+.|.++++.++++ .+|.|.-|
T Consensus 356 ~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G--~~G~il~~ 396 (398)
T PLN00033 356 GGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG--NDGVLLRY 396 (398)
T ss_pred CCcceeEccccCCCCcceeEEEEcCCCceEEEe--CCcEEEEe
Confidence 554433332 234568899998887766664 58877654
No 463
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.61 E-value=21 Score=37.41 Aligned_cols=94 Identities=11% Similarity=0.183 Sum_probs=51.8
Q ss_pred CeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEEEECCCCCEEEEeCCeEEEEEcCCCeeEEEEecC
Q 007234 119 GVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGH 198 (612)
Q Consensus 119 ~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~g~i~lwd~~~~~~~~~~~~h 198 (612)
.|..+..++.|..++-+|.+|.+.++=.+..-.-..++..+..|+|=.+.-+.++ ++.+ .
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~-ftss-------------------~ 164 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERF-FTSS-------------------T 164 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeeccccee-eccC-------------------C
Confidence 4667778899999888888887665543333333344443344444444322222 1111 1
Q ss_pred CCCEEEEEEeeCC---cEEEEEEcCCCeEEEEEcCCCc
Q 007234 199 PGAVRFMTFSDNG---KYVLSSAVGERYIALWRTDGVK 233 (612)
Q Consensus 199 ~~~v~~l~~sp~~---~~l~s~s~~d~~i~vwd~~~~~ 233 (612)
.-.+...+|+|+. ..|+.-. .|..|++|++....
T Consensus 165 ~ltl~Qa~WHP~S~~D~hL~iL~-sdnviRiy~lS~~t 201 (741)
T KOG4460|consen 165 SLTLKQAAWHPSSILDPHLVLLT-SDNVIRIYSLSEPT 201 (741)
T ss_pred ceeeeeccccCCccCCceEEEEe-cCcEEEEEecCCcc
Confidence 1123445666654 3444444 48888888876543
No 464
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=83.46 E-value=62 Score=33.84 Aligned_cols=181 Identities=8% Similarity=0.036 Sum_probs=100.6
Q ss_pred CcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCC-----------------
Q 007234 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT----------------- 148 (612)
Q Consensus 86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~----------------- 148 (612)
..+|.+=+.||.+.+|+-++-.....+ .. .--...+.|.+....|++++.+..+..|....
T Consensus 145 ~~~IcVQS~DG~L~~feqe~~~f~~~l-p~-~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~ 222 (418)
T PF14727_consen 145 RDFICVQSMDGSLSFFEQESFAFSRFL-PD-FLLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQD 222 (418)
T ss_pred ceEEEEEecCceEEEEeCCcEEEEEEc-CC-CCCCcCeEEeecCCEEEEecCceeEEEecHHHhhhcccccccccccccc
Confidence 478999999999999997654433222 22 23345677888888899999998888886421
Q ss_pred ---Cce-eE--EEecCCCCeeE---EEEC-CCCCEEEEeCCeEEEEEcCCCeeEEEEecCCCCEEEEEEee----CCc--
Q 007234 149 ---GSL-LG--KFRASTKGISC---MAVS-SDGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSD----NGK-- 212 (612)
Q Consensus 149 ---~~~-~~--~~~~~~~~v~~---l~~s-pdg~~l~~~~g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp----~~~-- 212 (612)
++. .. ++.- ...+.. +.++ .....++.|..++.+.+- +|......+-.-.+.....|.. ++.
T Consensus 223 ~~~~k~l~~dWs~nl-GE~~l~i~v~~~~~~~~~IvvLger~Lf~l~~-~G~l~~~krLd~~p~~~~~Y~~~~~~~~~~~ 300 (418)
T PF14727_consen 223 ISSGKKLNPDWSFNL-GEQALDIQVVRFSSSESDIVVLGERSLFCLKD-NGSLRFQKRLDYNPSCFCPYRVPWYNEPSTR 300 (418)
T ss_pred ccccccccceeEEEC-CceeEEEEEEEcCCCCceEEEEecceEEEEcC-CCeEEEEEecCCceeeEEEEEeecccCCCCc
Confidence 010 00 1111 122333 3333 233455555578888875 4544332222122222222221 222
Q ss_pred -EEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEEC
Q 007234 213 -YVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (612)
Q Consensus 213 -~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~ 281 (612)
.++.++ .++++.||.=.+-. ....+.+....+....+. .-...|++-+.+|.+.+-=+
T Consensus 301 ~~llV~t-~t~~LlVy~d~~L~-----WsA~l~~~PVal~v~~~~-----~~~G~IV~Ls~~G~L~v~YL 359 (418)
T PF14727_consen 301 LNLLVGT-HTGTLLVYEDTTLV-----WSAQLPHVPVALSVANFN-----GLKGLIVSLSDEGQLSVSYL 359 (418)
T ss_pred eEEEEEe-cCCeEEEEeCCeEE-----EecCCCCCCEEEEecccC-----CCCceEEEEcCCCcEEEEEe
Confidence 355555 68999888633221 112223444455555554 44567888899999887644
No 465
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=83.41 E-value=5.3 Score=25.89 Aligned_cols=30 Identities=13% Similarity=0.228 Sum_probs=24.2
Q ss_pred CCCCEEEEeC---CeEEEEEcCCCeeEEEEecC
Q 007234 169 SDGKMLATAA---GQLKTFNCSDHKKMQKFSGH 198 (612)
Q Consensus 169 pdg~~l~~~~---g~i~lwd~~~~~~~~~~~~h 198 (612)
|+++.|+++. ++|.++|..+++.+..+...
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg 33 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG 33 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC
Confidence 6788787765 79999999999888877653
No 466
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.19 E-value=39 Score=39.74 Aligned_cols=27 Identities=26% Similarity=0.391 Sum_probs=23.7
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCC
Q 007234 10 LTSFSPALDYFAICSGDARIKIWDTLK 36 (612)
Q Consensus 10 ~~~fspdg~~las~s~dg~i~iwd~~~ 36 (612)
.++|+|.-.++|.+..+|.|+++-...
T Consensus 40 ~~afD~~q~llai~t~tg~i~~yg~~~ 66 (993)
T KOG1983|consen 40 ALAFDPTQGLLAIGTRTGAIKIYGQPG 66 (993)
T ss_pred ceeeccccceEEEEEecccEEEecccc
Confidence 459999999999999999999987643
No 467
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=82.35 E-value=0.24 Score=50.68 Aligned_cols=139 Identities=13% Similarity=0.153 Sum_probs=94.1
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEE
Q 007234 10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (612)
Q Consensus 10 ~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (612)
...|-|.+.-++.++.+..+..||-. |+...... .....-.++|.-.- +..+
T Consensus 39 ~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n-------------------~tg~aldm~wDkeg--------dvla 90 (615)
T KOG2247|consen 39 IHRWRPEGHNLAVACANTIVIYYDKA-GQVILELN-------------------PTGKALDMAWDKEG--------DVLA 90 (615)
T ss_pred eeeEecCCCceehhhhhhHHHhhhhh-cceecccC-------------------CchhHhhhhhcccc--------chhh
Confidence 45788877778888888888888864 44433221 11223345555421 4567
Q ss_pred EEEECCCcEEEEEcCCCeEEE-EeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEEEEC
Q 007234 90 VLGTGGGDVLALAVSAGQLKW-RLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVS 168 (612)
Q Consensus 90 ~~gs~~g~I~vwd~~~~~~~~-~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~s 168 (612)
+.+-..+.+.+||+.+..... .....|... -+.|++.+..++.+...|.+.+++..+.+.+-..-.|...++++++.
T Consensus 91 vlAek~~piylwd~n~eytqqLE~gg~~s~s--ll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~ 168 (615)
T KOG2247|consen 91 VLAEKTGPIYLWDVNSEYTQQLESGGTSSKS--LLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVT 168 (615)
T ss_pred hhhhcCCCeeechhhhhhHHHHhccCcchHH--HHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEec
Confidence 778888999999998754321 111122222 27789888888888899999999987776665555577889999999
Q ss_pred CCCCEEEEeC
Q 007234 169 SDGKMLATAA 178 (612)
Q Consensus 169 pdg~~l~~~~ 178 (612)
+.+..+..+.
T Consensus 169 lEd~vil~dc 178 (615)
T KOG2247|consen 169 LEDYVILCDC 178 (615)
T ss_pred ccceeeecCc
Confidence 9887666554
No 468
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=82.10 E-value=64 Score=33.10 Aligned_cols=190 Identities=14% Similarity=0.242 Sum_probs=104.9
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEe-eecccccccccCCcEEEEEE-
Q 007234 16 ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKW-LSVDRKKKRKLGSSLLVLGT- 93 (612)
Q Consensus 16 dg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w-~~~~~~~~~~~~~~~l~~gs- 93 (612)
...+++....++=+.+||+. |+.++.+.. |... ...+.. +....+ ..-|++++
T Consensus 67 ~kSlIigTdK~~GL~VYdL~-Gk~lq~~~~----------------Gr~N--NVDvrygf~l~g~------~vDlavas~ 121 (381)
T PF02333_consen 67 AKSLIIGTDKKGGLYVYDLD-GKELQSLPV----------------GRPN--NVDVRYGFPLNGK------TVDLAVASD 121 (381)
T ss_dssp GG-EEEEEETTTEEEEEETT-S-EEEEE-S----------------S-EE--EEEEEEEEEETTE------EEEEEEEEE
T ss_pred ccceEEEEeCCCCEEEEcCC-CcEEEeecC----------------CCcc--eeeeecceecCCc------eEEEEEEec
Confidence 34577777778889999996 666666631 1110 001110 111100 11134444
Q ss_pred CC---CcEEEEEcC--CCeEEEEecc-C-----CCCCeEEEEEe--c-CCC-EEEEEecCCcEEEEECC---CC----ce
Q 007234 94 GG---GDVLALAVS--AGQLKWRLSD-C-----HPGGVSAISFA--T-HGS-CIYSAGADGMVCEIDPL---TG----SL 151 (612)
Q Consensus 94 ~~---g~I~vwd~~--~~~~~~~~~~-~-----h~~~V~~l~~s--p-~~~-~l~s~s~dg~v~iwd~~---~~----~~ 151 (612)
.+ ..|++|.+. ++.. ..+.. . -...+.++|+. | +|. +++....+|.+..|.+. .+ +.
T Consensus 122 R~~g~n~l~~f~id~~~g~L-~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~l 200 (381)
T PF02333_consen 122 RSDGRNSLRLFRIDPDTGEL-TDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATL 200 (381)
T ss_dssp -CCCT-EEEEEEEETTTTEE-EE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEE
T ss_pred CcCCCCeEEEEEecCCCCcc-eEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEE
Confidence 33 348888665 4433 23211 1 11347788874 3 354 46667788988888664 33 46
Q ss_pred eEEEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCC-----CeeEEEEec--CCCCEEEEEEee--CC-cEEEEEEc
Q 007234 152 LGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSD-----HKKMQKFSG--HPGAVRFMTFSD--NG-KYVLSSAV 219 (612)
Q Consensus 152 ~~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~-----~~~~~~~~~--h~~~v~~l~~sp--~~-~~l~s~s~ 219 (612)
+++|.. ...+..|........|+.+. --|+-|+.+. ++.+....+ ....|-.|++.. ++ .||+.++-
T Consensus 201 VR~f~~-~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQ 279 (381)
T PF02333_consen 201 VREFKV-GSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQ 279 (381)
T ss_dssp EEEEE--SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEG
T ss_pred EEEecC-CCcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcC
Confidence 777775 34788999998888888887 3566666542 233333322 345788887754 33 37777777
Q ss_pred CCCeEEEEEcCCC
Q 007234 220 GERYIALWRTDGV 232 (612)
Q Consensus 220 ~d~~i~vwd~~~~ 232 (612)
.+++..||+....
T Consensus 280 G~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 280 GDNSFAVYDREGP 292 (381)
T ss_dssp GGTEEEEEESSTT
T ss_pred CCCeEEEEecCCC
Confidence 7889999998764
No 469
>PLN02153 epithiospecifier protein
Probab=81.81 E-value=63 Score=32.78 Aligned_cols=103 Identities=14% Similarity=0.168 Sum_probs=50.4
Q ss_pred CcEEEEEECC-------CcEEEEEcCCCeEEEEeccCCCC-----CeEEEEEecCCCEEEEEecC-----CcEEEEECCC
Q 007234 86 SSLLVLGTGG-------GDVLALAVSAGQLKWRLSDCHPG-----GVSAISFATHGSCIYSAGAD-----GMVCEIDPLT 148 (612)
Q Consensus 86 ~~~l~~gs~~-------g~I~vwd~~~~~~~~~~~~~h~~-----~V~~l~~sp~~~~l~s~s~d-----g~v~iwd~~~ 148 (612)
+.+++.|+.+ ..+.+||+.+.+-...-..+... ....+.+ +++.++.|+.+ ..+.+||+.+
T Consensus 33 ~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~t 110 (341)
T PLN02153 33 DKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDTVK 110 (341)
T ss_pred CEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEECCC
Confidence 5566666653 24888998886543211101000 1112222 45566666643 3578889876
Q ss_pred CceeE--EEec---CCC-CeeEEEECCCCCEEEEeC-C------------eEEEEEcCCCee
Q 007234 149 GSLLG--KFRA---STK-GISCMAVSSDGKMLATAA-G------------QLKTFNCSDHKK 191 (612)
Q Consensus 149 ~~~~~--~~~~---~~~-~v~~l~~spdg~~l~~~~-g------------~i~lwd~~~~~~ 191 (612)
.+-.. .+.. ... .-.+++. -++++.+.|+ . .+.+||.++.+-
T Consensus 111 ~~W~~~~~~~~~~~p~~R~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W 171 (341)
T PLN02153 111 NEWTFLTKLDEEGGPEARTFHSMAS-DENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKW 171 (341)
T ss_pred CEEEEeccCCCCCCCCCceeeEEEE-ECCEEEEECCccCCCccCCCcccceEEEEECCCCeE
Confidence 54321 1110 111 1122232 3566666655 1 477888877643
No 470
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=81.64 E-value=67 Score=32.98 Aligned_cols=187 Identities=12% Similarity=0.113 Sum_probs=96.6
Q ss_pred CcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEe----cCCCE--EEEEec-C---CcEEEEECC--CCceeE
Q 007234 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFA----THGSC--IYSAGA-D---GMVCEIDPL--TGSLLG 153 (612)
Q Consensus 86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~s----p~~~~--l~s~s~-d---g~v~iwd~~--~~~~~~ 153 (612)
.++|+.....+-+.+||+..... ..+.. +..+.+..- -+|+. |+.++. + .+|++|-+. ++. +.
T Consensus 68 kSlIigTdK~~GL~VYdL~Gk~l-q~~~~---Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~-L~ 142 (381)
T PF02333_consen 68 KSLIIGTDKKGGLYVYDLDGKEL-QSLPV---GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGE-LT 142 (381)
T ss_dssp G-EEEEEETTTEEEEEETTS-EE-EEE-S---S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTE-EE
T ss_pred cceEEEEeCCCCEEEEcCCCcEE-EeecC---CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCc-ce
Confidence 56677777778899999985554 34432 333333321 13443 455553 2 468888664 343 33
Q ss_pred EEec-------CCCCeeEEEEC--C-CCCEEEEeC---CeEEEEEc---CCC----eeEEEEecCCCCEEEEEEeeCCcE
Q 007234 154 KFRA-------STKGISCMAVS--S-DGKMLATAA---GQLKTFNC---SDH----KKMQKFSGHPGAVRFMTFSDNGKY 213 (612)
Q Consensus 154 ~~~~-------~~~~v~~l~~s--p-dg~~l~~~~---g~i~lwd~---~~~----~~~~~~~~h~~~v~~l~~sp~~~~ 213 (612)
.+.. ....++.+|+. | +|.+.+... |.+.-|-+ ..+ +.+++|.. .+.+..|.......+
T Consensus 143 ~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCVVDDe~g~ 221 (381)
T PF02333_consen 143 DVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCVVDDETGR 221 (381)
T ss_dssp E-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEETTTTE
T ss_pred EcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEEEecccCC
Confidence 3321 12346777763 3 566555433 76666654 333 46788864 446888888877777
Q ss_pred EEEEEcCCCeEEEEEcCCCccccceeeEeecC-----CceeEEeEEecCCccCCCCcEEEEEec-CCcEEEEECCCc
Q 007234 214 VLSSAVGERYIALWRTDGVKKQSASCVLAMEH-----PAVFMDCRCIDNGGVDDAGLYVLAISE-TGVCYIWYGQNI 284 (612)
Q Consensus 214 l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~t~s~-dg~i~iwd~~~~ 284 (612)
|+.+= ++.-|.-|+.+.........+..... ...-+....-. ....+|++++. +++..+|+.+..
T Consensus 222 LYvgE-E~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~-----~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 222 LYVGE-EDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGS-----DGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp EEEEE-TTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-C-----CC-EEEEEEEGGGTEEEEEESSTT
T ss_pred EEEec-CccEEEEEecCCCCCCcceeeecccccccccCccceEEEecC-----CCCeEEEEEcCCCCeEEEEecCCC
Confidence 88764 77777777766433221222322211 11222322221 22346666655 778999997643
No 471
>PF09384 UTP15_C: UTP15 C terminal; InterPro: IPR018983 This entry represents the C-terminal domain of the U3 small nucleolar RNA-associated protein 15 (UTP15). This protein is involved in nucleolar processing of pre-18S ribosomal RNA, and is required for optimal pre-ribosomal RNA transcription by RNA polymerase I together with a subset of U3 proteins required for transcription (t-UTPs). UTP15 is a component of the ribosomal small subunit (SSU) processome, which is a large ribonucleoprotein (RNP) required for processing of precursors to the small subunit RNA, the 18S, of the ribosome [, ]. This domain is found C-terminal to the WD40 repeat (IPR001680 from INTERPRO). UTP15 associates with U3 snoRNA, which is ubiquitous in eukaryotes and is required for nucleolar processing of pre-18S ribosomal RNA []. ; GO: 0006364 rRNA processing, 0005730 nucleolus
Probab=81.27 E-value=4.1 Score=35.74 Aligned_cols=71 Identities=10% Similarity=0.088 Sum_probs=61.9
Q ss_pred ChhHHHHhhhccChhhHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHhcccccCCcChHHHHHHHHHHHHh
Q 007234 490 PVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNHGHHLLSQESLTPMLSSLYKVFRS 561 (612)
Q Consensus 490 ~~~~I~~ti~~Lp~~~~~~lL~~l~~~l~~~~~~~~~~~~W~~~ll~~H~~~l~s~~~l~~~L~~l~~~l~~ 561 (612)
.-..+..++...+...+.++|+|+...+ ..|.-...++.++..+|-+.+..+-..|.+...+..|+..+.+
T Consensus 60 ~R~~L~~AL~~Rde~~L~piL~Fl~k~i-~~pr~~~~l~~v~~~ildiY~~~~~~s~~v~~~~~~L~~~v~~ 130 (148)
T PF09384_consen 60 RRGALRAALAGRDEESLEPILKFLIKNI-TDPRYTRILVDVANIILDIYSPVIGQSPEVDKLFQKLQRKVQE 130 (148)
T ss_pred HccHHHHHHHhCCHHHHHHHHHHHHHhC-CCcccHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 4567888888899999999999999666 6787799999999999999999999988888899888887764
No 472
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=81.20 E-value=27 Score=35.93 Aligned_cols=161 Identities=17% Similarity=0.175 Sum_probs=90.5
Q ss_pred cccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEE-eecc-CCccccccccccccccccccceeEEEeeecccccc
Q 007234 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTE-FADI-ASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (612)
Q Consensus 4 ~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~-~~~~-~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (612)
++|..+ -..|||++|..-+. .++.|+++.+...... +-.. .+.+.. .++.-...
T Consensus 221 ~~v~ql--lL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~--------------~Vte~l~l------- 276 (733)
T COG4590 221 SDVSQL--LLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRH--------------QVTEQLYL------- 276 (733)
T ss_pred cchHhh--EECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHH--------------HHHHHHHH-------
Confidence 466666 78899998876654 5788988875543221 1100 000000 00000000
Q ss_pred cccCCcEEEEEECCCcEEEE-EcCCCeEEEEe-----ccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEE
Q 007234 82 RKLGSSLLVLGTGGGDVLAL-AVSAGQLKWRL-----SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKF 155 (612)
Q Consensus 82 ~~~~~~~l~~gs~~g~I~vw-d~~~~~~~~~~-----~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~ 155 (612)
-.++..+.++..||-|.-| |+..+... ++ .+-....+..+.-..+.+-+++-+..|++..+.....+.+- +
T Consensus 277 -L~Gg~SLLv~~~dG~vsQWFdvr~~~~p-~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL-~ 353 (733)
T COG4590 277 -LSGGFSLLVVHEDGLVSQWFDVRRDGQP-HLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLL-F 353 (733)
T ss_pred -HhCceeEEEEcCCCceeeeeeeecCCCC-cceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCccee-h
Confidence 0025668888999997654 66544321 11 01112333333333334557777888888887754433322 2
Q ss_pred ecCCCCeeEEEECCCCCEEEEeC-CeEEEEEcCCCee
Q 007234 156 RASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKK 191 (612)
Q Consensus 156 ~~~~~~v~~l~~spdg~~l~~~~-g~i~lwd~~~~~~ 191 (612)
......+.-+++||.+.++++-. |.++++.+++..+
T Consensus 354 ~~~~~~~~~~~~Sp~~~~Ll~e~~gki~~~~l~Nr~P 390 (733)
T COG4590 354 ERAYQAPQLVAMSPNQAYLLSEDQGKIRLAQLENRNP 390 (733)
T ss_pred hhhhcCcceeeeCcccchheeecCCceEEEEecCCCC
Confidence 22233667899999999999988 8999998876543
No 473
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=80.73 E-value=1.1e+02 Score=35.01 Aligned_cols=115 Identities=10% Similarity=0.057 Sum_probs=75.4
Q ss_pred ccceeEEEeeecccccccccCCcEEEEEECCCcEEEEEcCCC----eEEEEeccCCCC----------CeEEEEEecCCC
Q 007234 65 SVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAG----QLKWRLSDCHPG----------GVSAISFATHGS 130 (612)
Q Consensus 65 ~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~----~~~~~~~~~h~~----------~V~~l~~sp~~~ 130 (612)
+.....++++|.+ ...+|+....|.-.||++..+ .........+.+ .-..+.|.++..
T Consensus 145 g~~~aDv~FnP~~--------~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~ 216 (765)
T PF10214_consen 145 GFPHADVAFNPWD--------QRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSN 216 (765)
T ss_pred CCccceEEeccCc--------cceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCC
Confidence 3445566777665 568999999999999999211 111122112222 234778888888
Q ss_pred EEEEEecCCcEEEEECCCCceeE-EEe-cCCCCeeEEEECCC--CCEEEEeCCeEEEEEcCC
Q 007234 131 CIYSAGADGMVCEIDPLTGSLLG-KFR-ASTKGISCMAVSSD--GKMLATAAGQLKTFNCSD 188 (612)
Q Consensus 131 ~l~s~s~dg~v~iwd~~~~~~~~-~~~-~~~~~v~~l~~spd--g~~l~~~~g~i~lwd~~~ 188 (612)
.|+.++. ..+.++|+.+..... ... .....|..+.-+|+ +..++..+..|...++..
T Consensus 217 ~lLv~~r-~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~~ 277 (765)
T PF10214_consen 217 RLLVCNR-SKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTSKEIIWLDVKS 277 (765)
T ss_pred EEEEEcC-CceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEecCeEEEEEccC
Confidence 8888854 568899998876533 222 23347888888887 455555558888888876
No 474
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=80.71 E-value=12 Score=33.87 Aligned_cols=26 Identities=15% Similarity=0.262 Sum_probs=19.4
Q ss_pred CeeEEEECCCCCEEEEeCCeEEEEEc
Q 007234 161 GISCMAVSSDGKMLATAAGQLKTFNC 186 (612)
Q Consensus 161 ~v~~l~~spdg~~l~~~~g~i~lwd~ 186 (612)
...+++||.||++.++++..|+|.+.
T Consensus 6 ~~~~l~WS~Dg~laV~t~~~v~IL~~ 31 (173)
T PF12657_consen 6 CPNALAWSEDGQLAVATGESVHILDP 31 (173)
T ss_pred CCcCeeECCCCCEEEEcCCeEEEEec
Confidence 34678888888777777788888843
No 475
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=80.51 E-value=3 Score=26.79 Aligned_cols=25 Identities=24% Similarity=0.405 Sum_probs=17.2
Q ss_pred eeEEEEcCCCCEEEEEeC-C--CcEEEE
Q 007234 8 DILTSFSPALDYFAICSG-D--ARIKIW 32 (612)
Q Consensus 8 ~l~~~fspdg~~las~s~-d--g~i~iw 32 (612)
..+.+|||||++|+.++. + |.-.||
T Consensus 11 ~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 11 DGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp EEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred ccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 356799999999987664 4 555555
No 476
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.22 E-value=34 Score=37.67 Aligned_cols=180 Identities=16% Similarity=0.168 Sum_probs=90.8
Q ss_pred cEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEE----ecCCCCeeEEEECCCCC
Q 007234 97 DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKF----RASTKGISCMAVSSDGK 172 (612)
Q Consensus 97 ~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~----~~~~~~v~~l~~spdg~ 172 (612)
.|+||+.. |+.+.++.-.|. .+.++.|+.+. .|++...||+++++++. |+.+... ......|..+.+..+|-
T Consensus 65 ~I~If~~s-G~lL~~~~w~~~-~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~-ge~ie~~svg~e~~~~~I~ec~~f~~GV 140 (829)
T KOG2280|consen 65 YIRIFNIS-GQLLGRILWKHG-ELIGMGWSDDE-ELICVQKDGTVHVYGLL-GEFIESNSVGFESQMSDIVECRFFHNGV 140 (829)
T ss_pred eEEEEecc-ccchHHHHhcCC-CeeeecccCCc-eEEEEeccceEEEeecc-hhhhcccccccccccCceeEEEEecCce
Confidence 37777764 555444443354 78899999765 57777899999999974 3333321 22223455555555777
Q ss_pred EEEEeCCeEEEEEcCCCeeEEEEec---CCCCEEEEEEeeCCc---EEEEEEcCCCeEEEEEcCCCccccceeeEeecCC
Q 007234 173 MLATAAGQLKTFNCSDHKKMQKFSG---HPGAVRFMTFSDNGK---YVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP 246 (612)
Q Consensus 173 ~l~~~~g~i~lwd~~~~~~~~~~~~---h~~~v~~l~~sp~~~---~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 246 (612)
.+.+.+|.+.+-+-.....+++++. ...+-+|-...+++. .++-.....+ ..++........ ...+..+
T Consensus 141 avlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q----~~~~~~~ 215 (829)
T KOG2280|consen 141 AVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQ----LHALSWP 215 (829)
T ss_pred EEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceeccccc----ccccCCC
Confidence 7777776655543222212233322 111212222222221 1111100000 012222222111 1111122
Q ss_pred ceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceeccc
Q 007234 247 AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT 290 (612)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~ 290 (612)
...+.-+..+ |+.++|+--+.+|.|.+-+.+..+.+-.+
T Consensus 216 ~~~~~ki~VS-----~n~~~laLyt~~G~i~~vs~D~~~~lce~ 254 (829)
T KOG2280|consen 216 NSSVVKISVS-----PNRRFLALYTETGKIWVVSIDLSQILCEF 254 (829)
T ss_pred CceEEEEEEc-----CCcceEEEEecCCcEEEEecchhhhhhcc
Confidence 1222223344 88999999999999999887776655433
No 477
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=80.02 E-value=43 Score=33.88 Aligned_cols=99 Identities=19% Similarity=0.307 Sum_probs=56.3
Q ss_pred CeEEEEEecCCCEEEEEecCCcEEEEECCCCce---eEEEe----cCCCCeeEEEECCC----CCEEEEeC---------
Q 007234 119 GVSAISFATHGSCIYSAGADGMVCEIDPLTGSL---LGKFR----ASTKGISCMAVSSD----GKMLATAA--------- 178 (612)
Q Consensus 119 ~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~---~~~~~----~~~~~v~~l~~spd----g~~l~~~~--------- 178 (612)
..++|+|.|||+.++ +...|.|++++ ..+.. +..+. ........++++|+ +.+.++.+
T Consensus 3 ~P~~~a~~pdG~l~v-~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLV-AERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEE-EETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEE-EeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 457899999987655 45699999999 45543 22221 23347899999994 33333222
Q ss_pred -CeEEEEEcCCC-------ee-EEEEec---CCCCEEEEEEeeCCcEEEEEEc
Q 007234 179 -GQLKTFNCSDH-------KK-MQKFSG---HPGAVRFMTFSDNGKYVLSSAV 219 (612)
Q Consensus 179 -g~i~lwd~~~~-------~~-~~~~~~---h~~~v~~l~~sp~~~~l~s~s~ 219 (612)
..|.-|....+ +. +..+.. ....-..|.|.|||.+.++.|+
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~ 133 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGD 133 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCC
Confidence 13444444333 11 222232 2334567999999987777663
No 478
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=79.84 E-value=61 Score=31.37 Aligned_cols=190 Identities=14% Similarity=0.188 Sum_probs=98.8
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEE
Q 007234 11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV 90 (612)
Q Consensus 11 ~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~ 90 (612)
++-+|||..-.++...|.|--.|..+|+....--+.......++..++ --.|+..
T Consensus 67 vapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpd-----------g~~Witd-------------- 121 (353)
T COG4257 67 VAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPD-----------GSAWITD-------------- 121 (353)
T ss_pred cccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCC-----------CCeeEec--------------
Confidence 377788876667777777777788888776543322222211111111 0112111
Q ss_pred EEECCCcEEEEEcCCCeEE-EEeccCC-CCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCC-CCeeEEEE
Q 007234 91 LGTGGGDVLALAVSAGQLK-WRLSDCH-PGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST-KGISCMAV 167 (612)
Q Consensus 91 ~gs~~g~I~vwd~~~~~~~-~~~~~~h-~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~-~~v~~l~~ 167 (612)
+.. -|.-.|.++.+.. ..+...| ........|.+.|++-+++. .|.---.|..+ ..++.|.... ...+.|+.
T Consensus 122 --~~~-aI~R~dpkt~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q-~G~yGrLdPa~-~~i~vfpaPqG~gpyGi~a 196 (353)
T COG4257 122 --TGL-AIGRLDPKTLEVTRFPLPLEHADANLETAVFDPWGNLWFTGQ-IGAYGRLDPAR-NVISVFPAPQGGGPYGICA 196 (353)
T ss_pred --Ccc-eeEEecCcccceEEeecccccCCCcccceeeCCCccEEEeec-cccceecCccc-CceeeeccCCCCCCcceEE
Confidence 111 2334444444332 1222223 34677888999998888774 22211222211 2233444333 35688999
Q ss_pred CCCCCEEEEeC--CeEEEEEcCCCeeEEEEe---cCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCC
Q 007234 168 SSDGKMLATAA--GQLKTFNCSDHKKMQKFS---GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (612)
Q Consensus 168 spdg~~l~~~~--g~i~lwd~~~~~~~~~~~---~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~ 232 (612)
.|||..-++.- +.|-..|..++.. ..+. .....-..+--+|.|..-++.. ..+.+..+|....
T Consensus 197 tpdGsvwyaslagnaiaridp~~~~a-ev~p~P~~~~~gsRriwsdpig~~wittw-g~g~l~rfdPs~~ 264 (353)
T COG4257 197 TPDGSVWYASLAGNAIARIDPFAGHA-EVVPQPNALKAGSRRIWSDPIGRAWITTW-GTGSLHRFDPSVT 264 (353)
T ss_pred CCCCcEEEEeccccceEEcccccCCc-ceecCCCcccccccccccCccCcEEEecc-CCceeeEeCcccc
Confidence 99999888744 6676667666521 1221 1112233444456777666654 5667777765544
No 479
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=79.70 E-value=70 Score=36.68 Aligned_cols=112 Identities=10% Similarity=-0.005 Sum_probs=73.9
Q ss_pred CCeEEEEEec-CCCEEEEEecCCcEEEEECCCCc-----eeEEEecCC----------CCeeEEEECCCCCEEEEeC-Ce
Q 007234 118 GGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGS-----LLGKFRAST----------KGISCMAVSSDGKMLATAA-GQ 180 (612)
Q Consensus 118 ~~V~~l~~sp-~~~~l~s~s~dg~v~iwd~~~~~-----~~~~~~~~~----------~~v~~l~~spdg~~l~~~~-g~ 180 (612)
.+..+++|+| +.+.|+.....|.-.+||+.... ......... ..-..+.|.++-..|++.+ ..
T Consensus 146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~~ 225 (765)
T PF10214_consen 146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRSK 225 (765)
T ss_pred CccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCCc
Confidence 4678999999 45679999999999999992111 111110111 2334788988888888888 89
Q ss_pred EEEEEcCCCeeEEEE--ecCCCCEEEEEEeeC--CcEEEEEEcCCCeEEEEEcCCC
Q 007234 181 LKTFNCSDHKKMQKF--SGHPGAVRFMTFSDN--GKYVLSSAVGERYIALWRTDGV 232 (612)
Q Consensus 181 i~lwd~~~~~~~~~~--~~h~~~v~~l~~sp~--~~~l~s~s~~d~~i~vwd~~~~ 232 (612)
+.++|+++......+ ......|..+.-+|. +..|+.+ ...|...++...
T Consensus 226 l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT---s~eiiw~~~~~~ 278 (765)
T PF10214_consen 226 LMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT---SKEIIWLDVKSS 278 (765)
T ss_pred eEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEe---cCeEEEEEccCC
Confidence 999999987653312 234467888888876 3333332 356777777763
No 480
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=78.83 E-value=93 Score=32.92 Aligned_cols=29 Identities=10% Similarity=0.152 Sum_probs=22.5
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 007234 10 LTSFSPALDYFAICSGDARIKIWDTLKGQ 38 (612)
Q Consensus 10 ~~~fspdg~~las~s~dg~i~iwd~~~~~ 38 (612)
.++|.|||++|++--..|+|++++..++.
T Consensus 34 ~maflPDG~llVtER~~G~I~~v~~~~~~ 62 (454)
T TIGR03606 34 ALLWGPDNQLWVTERATGKILRVNPETGE 62 (454)
T ss_pred EEEEcCCCeEEEEEecCCEEEEEeCCCCc
Confidence 45999999888766546999999876554
No 481
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=78.02 E-value=66 Score=30.80 Aligned_cols=115 Identities=14% Similarity=0.222 Sum_probs=63.2
Q ss_pred CcEEEEEECC-Cc--EEEEEcCC--CeEEEEecc---CCCCCeEEEEEecCCCEEEEEecCC-cEEEEECCC-Cc-eeEE
Q 007234 86 SSLLVLGTGG-GD--VLALAVSA--GQLKWRLSD---CHPGGVSAISFATHGSCIYSAGADG-MVCEIDPLT-GS-LLGK 154 (612)
Q Consensus 86 ~~~l~~gs~~-g~--I~vwd~~~--~~~~~~~~~---~h~~~V~~l~~sp~~~~l~s~s~dg-~v~iwd~~~-~~-~~~~ 154 (612)
|+++.+|+.. |. +++++... +.+.+.-.. ....-=-....-|||+.|+.|+.+. +...|.-.. .. ....
T Consensus 78 G~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~ 157 (243)
T PF07250_consen 78 GRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTL 157 (243)
T ss_pred CCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCCCCEEEEeCcCCCcccccCCccCCCCceee
Confidence 7778777653 33 88888755 111111100 0001111233456899988888765 344454321 11 1111
Q ss_pred --Eec-----CCCCeeEEEECCCCCEEEEeCCeEEEEEcCCCeeEEEEecCCC
Q 007234 155 --FRA-----STKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGHPG 200 (612)
Q Consensus 155 --~~~-----~~~~v~~l~~spdg~~l~~~~g~i~lwd~~~~~~~~~~~~h~~ 200 (612)
+.. ...-.--+-..|||++++.+...-.|||..+++.++.++.-.+
T Consensus 158 ~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s~i~d~~~n~v~~~lP~lPg 210 (243)
T PF07250_consen 158 PFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGSIIYDYKTNTVVRTLPDLPG 210 (243)
T ss_pred ecchhhhccCccccCceEEEcCCCCEEEEEcCCcEEEeCCCCeEEeeCCCCCC
Confidence 110 1112234666799999999996677889999988777764443
No 482
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=77.29 E-value=78 Score=31.21 Aligned_cols=194 Identities=17% Similarity=0.158 Sum_probs=98.4
Q ss_pred CcEEEEEECCCcEEEEEcC------CC-eEEEEecc--C--CCCCeEEEEEecCCC------------EEEEEecCCcEE
Q 007234 86 SSLLVLGTGGGDVLALAVS------AG-QLKWRLSD--C--HPGGVSAISFATHGS------------CIYSAGADGMVC 142 (612)
Q Consensus 86 ~~~l~~gs~~g~I~vwd~~------~~-~~~~~~~~--~--h~~~V~~l~~sp~~~------------~l~s~s~dg~v~ 142 (612)
+.+-++....+...+||.. .. ..+..+.. + .....+.+.|+.... .++.++.||+|.
T Consensus 34 ~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fif~tEdGTis 113 (336)
T TIGR03118 34 GPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFLFVTEDGTLS 113 (336)
T ss_pred CCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEEEEeCCceEE
Confidence 4455566666778899986 12 22223321 1 234678888875332 267788999999
Q ss_pred EEECCCCce-----eEEEecC-CC-CeeEEEEC--CCCCEEEEeC---CeEEEEEcCCCeeE--EEEecC-----CCC--
Q 007234 143 EIDPLTGSL-----LGKFRAS-TK-GISCMAVS--SDGKMLATAA---GQLKTFNCSDHKKM--QKFSGH-----PGA-- 201 (612)
Q Consensus 143 iwd~~~~~~-----~~~~~~~-~~-~v~~l~~s--pdg~~l~~~~---g~i~lwd~~~~~~~--~~~~~h-----~~~-- 201 (612)
-|...-+.. ...+... .. -...+++. ..+.+|..+. ++|.+||-.=.+.. ..|... -.+
T Consensus 114 aW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~iPagyAPFn 193 (336)
T TIGR03118 114 GWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPALPAGYAPFN 193 (336)
T ss_pred eecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCCCCCCCCCcc
Confidence 998543322 1222221 12 23345554 3467888887 89999985422211 011100 011
Q ss_pred EEE------EEE---eeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCC-----ceeEEeEEecCCccCCCCcEE
Q 007234 202 VRF------MTF---SDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP-----AVFMDCRCIDNGGVDDAGLYV 267 (612)
Q Consensus 202 v~~------l~~---sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l 267 (612)
|.. +.| .+++..=+.+. .-|.|.+||+...-. ..+.+. ..-+......-. ...|.+|
T Consensus 194 Iqnig~~lyVtYA~qd~~~~d~v~G~-G~G~VdvFd~~G~l~------~r~as~g~LNaPWG~a~APa~FG--~~sg~lL 264 (336)
T TIGR03118 194 VQNLGGTLYVTYAQQDADRNDEVAGA-GLGYVNVFTLNGQLL------RRVASSGRLNAPWGLAIAPESFG--SLSGALL 264 (336)
T ss_pred eEEECCeEEEEEEecCCcccccccCC-CcceEEEEcCCCcEE------EEeccCCcccCCceeeeChhhhC--CCCCCeE
Confidence 111 111 12222222222 356899998876532 222111 111111111111 1345666
Q ss_pred EEEecCCcEEEEECCCcceec
Q 007234 268 LAISETGVCYIWYGQNIEELR 288 (612)
Q Consensus 268 ~t~s~dg~i~iwd~~~~~~~~ 288 (612)
+.--.||+|..||..+++.+.
T Consensus 265 VGNFGDG~InaFD~~sG~~~g 285 (336)
T TIGR03118 265 VGNFGDGTINAYDPQSGAQLG 285 (336)
T ss_pred EeecCCceeEEecCCCCceee
Confidence 665669999999998887654
No 483
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=76.40 E-value=65 Score=29.83 Aligned_cols=158 Identities=12% Similarity=0.046 Sum_probs=80.2
Q ss_pred eEEEEEecCCCEEEEEec--CCcEEEEECCCCceeEEEecCCCCeeE--EEECCCCCEEEEeC-CeEEEEEcCCCeeEEE
Q 007234 120 VSAISFATHGSCIYSAGA--DGMVCEIDPLTGSLLGKFRASTKGISC--MAVSSDGKMLATAA-GQLKTFNCSDHKKMQK 194 (612)
Q Consensus 120 V~~l~~sp~~~~l~s~s~--dg~v~iwd~~~~~~~~~~~~~~~~v~~--l~~spdg~~l~~~~-g~i~lwd~~~~~~~~~ 194 (612)
-.++.+. +|.++.+.+. ...|++||+.+|+.+..-+-....+.. +.-..|.-+.++=. |.-..+|.++.+++..
T Consensus 48 TQGL~~~-~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~ 126 (262)
T COG3823 48 TQGLEYL-DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGR 126 (262)
T ss_pred hcceeee-CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcc
Confidence 3455554 4566666664 346999999999877654432111111 11111222233333 7788889888877766
Q ss_pred EecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCC
Q 007234 195 FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG 274 (612)
Q Consensus 195 ~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg 274 (612)
+. -++.=..+ ..|+..|+.+. +..+++.-|..+-.......+-.-..+...+.-+.+ -+|...+-.=.+.
T Consensus 127 ~~-y~GeGWgL--t~d~~~Limsd-GsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~------VdG~lyANVw~t~ 196 (262)
T COG3823 127 FS-YEGEGWGL--TSDDKNLIMSD-GSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEW------VDGELYANVWQTT 196 (262)
T ss_pred cc-cCCcceee--ecCCcceEeeC-CceEEEecCHHHhhhcceEEEEECCeecccccceee------eccEEEEeeeeec
Confidence 64 22333333 34565566653 455666666555433311111111111222222223 2455555555555
Q ss_pred cEEEEECCCcceec
Q 007234 275 VCYIWYGQNIEELR 288 (612)
Q Consensus 275 ~i~iwd~~~~~~~~ 288 (612)
.|..-+.++|+.+.
T Consensus 197 ~I~rI~p~sGrV~~ 210 (262)
T COG3823 197 RIARIDPDSGRVVA 210 (262)
T ss_pred ceEEEcCCCCcEEE
Confidence 66666777776654
No 484
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=76.06 E-value=38 Score=39.80 Aligned_cols=139 Identities=9% Similarity=0.137 Sum_probs=83.0
Q ss_pred EECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEE--------ecCCCEEEEEecCCcEEEEECC----CCce-----eEE
Q 007234 92 GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISF--------ATHGSCIYSAGADGMVCEIDPL----TGSL-----LGK 154 (612)
Q Consensus 92 gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~--------sp~~~~l~s~s~dg~v~iwd~~----~~~~-----~~~ 154 (612)
.+.|.++.+|+.+++.....+ .+-...|..+.. .|.=++++.-..--.|.++-+. ++.. ..+
T Consensus 95 iTiDn~L~lWny~~~~e~~~~-d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~ 173 (1311)
T KOG1900|consen 95 ITIDNNLFLWNYESDNELAEY-DGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFK 173 (1311)
T ss_pred EEeCCeEEEEEcCCCCccccc-cchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCccccccccee
Confidence 356778999999986655444 445555555543 2222333333333334444321 2111 012
Q ss_pred EecCCCCeeEEEECCCCCEEEEeC-CeEEEEEcCC--C---e-e----------------EEEEe-cCCCCEEEEEEeeC
Q 007234 155 FRASTKGISCMAVSSDGKMLATAA-GQLKTFNCSD--H---K-K----------------MQKFS-GHPGAVRFMTFSDN 210 (612)
Q Consensus 155 ~~~~~~~v~~l~~spdg~~l~~~~-g~i~lwd~~~--~---~-~----------------~~~~~-~h~~~v~~l~~sp~ 210 (612)
+......|.|+....+|+.+.+|- |.|+-.-.+. + + + +..+. ++..+|..+.....
T Consensus 174 i~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~S 253 (1311)
T KOG1900|consen 174 ISVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNS 253 (1311)
T ss_pred eecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccc
Confidence 222345789999889999999987 7554332221 1 1 0 12233 56779999999887
Q ss_pred CcEEEEEEcCCCeEEEEEcCCC
Q 007234 211 GKYVLSSAVGERYIALWRTDGV 232 (612)
Q Consensus 211 ~~~l~s~s~~d~~i~vwd~~~~ 232 (612)
...+.+-+ ..++|.+|++...
T Consensus 254 R~IlY~ls-ek~~v~~Y~i~~~ 274 (1311)
T KOG1900|consen 254 RNILYVLS-EKGTVSAYDIGGN 274 (1311)
T ss_pred cceeeeec-cCceEEEEEccCC
Confidence 77777776 7899999999873
No 485
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=75.50 E-value=51 Score=28.16 Aligned_cols=111 Identities=7% Similarity=-0.005 Sum_probs=58.2
Q ss_pred EEECCCCCEEEEeC--CeEEEEEcCCC--------eeEEEEecCCCCEEEEEEee-----CCcEEEEEEcCCCeEEEEEc
Q 007234 165 MAVSSDGKMLATAA--GQLKTFNCSDH--------KKMQKFSGHPGAVRFMTFSD-----NGKYVLSSAVGERYIALWRT 229 (612)
Q Consensus 165 l~~spdg~~l~~~~--g~i~lwd~~~~--------~~~~~~~~h~~~v~~l~~sp-----~~~~l~s~s~~d~~i~vwd~ 229 (612)
-.|.....-|+++. |+|.|++.... ..++.+. -...|++++-.+ +...|+.++ ...+..||+
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt--~t~llaYDV 80 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT--QTSLLAYDV 80 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec--cceEEEEEc
Confidence 34554455566555 89999987643 2333343 455677775443 234566654 678999999
Q ss_pred CCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcce
Q 007234 230 DGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE 286 (612)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~ 286 (612)
...... ....+......+.+-.+. ....-++..+.+..|.-||.+-.+.
T Consensus 81 ~~N~d~---Fyke~~DGvn~i~~g~~~-----~~~~~l~ivGGncsi~Gfd~~G~e~ 129 (136)
T PF14781_consen 81 ENNSDL---FYKEVPDGVNAIVIGKLG-----DIPSPLVIVGGNCSIQGFDYEGNEI 129 (136)
T ss_pred ccCchh---hhhhCccceeEEEEEecC-----CCCCcEEEECceEEEEEeCCCCcEE
Confidence 887644 111222223333333333 2223334444445666666544443
No 486
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=75.14 E-value=1.7e+02 Score=33.97 Aligned_cols=172 Identities=12% Similarity=0.068 Sum_probs=90.0
Q ss_pred EEEEEcCCCeEEEEeccCCC---CCeEEEEEecCCCE--EEEEe-----------cCCcEEEEEC-CCCceeEEEecCCC
Q 007234 98 VLALAVSAGQLKWRLSDCHP---GGVSAISFATHGSC--IYSAG-----------ADGMVCEIDP-LTGSLLGKFRASTK 160 (612)
Q Consensus 98 I~vwd~~~~~~~~~~~~~h~---~~V~~l~~sp~~~~--l~s~s-----------~dg~v~iwd~-~~~~~~~~~~~~~~ 160 (612)
|+++|..++..+..+..+.. -.|.++.|+..... +++|. .+|.++.|++ +.|+.+.-+....-
T Consensus 855 I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~~ 934 (1205)
T KOG1898|consen 855 IRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTEI 934 (1205)
T ss_pred EEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccCC
Confidence 88888888877655432221 24666677653332 33332 2344666654 23443333322222
Q ss_pred CeeEEEECCCCCEEEEeC-CeEEEEEcCCCeeEEEEec--CCCCEEEEEEeeCCcEEEEEEcCCCe-EEEEEcCCCcccc
Q 007234 161 GISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSG--HPGAVRFMTFSDNGKYVLSSAVGERY-IALWRTDGVKKQS 236 (612)
Q Consensus 161 ~v~~l~~spdg~~l~~~~-g~i~lwd~~~~~~~~~~~~--h~~~v~~l~~sp~~~~l~s~s~~d~~-i~vwd~~~~~~~~ 236 (612)
+-.-.+..|-+.++++|- ..+++||+-..+++++... -...|+.+.+. +..++.+...++. ...|+-...+..
T Consensus 935 ~~~v~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~--~~RI~VgD~qeSV~~~~y~~~~n~l~- 1011 (1205)
T KOG1898|consen 935 PGPVGAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTY--GARIVVGDIQESVHFVRYRREDNQLI- 1011 (1205)
T ss_pred CccceEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEeec--ceEEEEeeccceEEEEEEecCCCeEE-
Confidence 222345556555666665 7999999988777655432 24556666654 5567776654542 223443333322
Q ss_pred ceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEEC
Q 007234 237 ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (612)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~ 281 (612)
++.-+.-...++...+ -|-..++.+..=|.+.+-.+
T Consensus 1012 ---~fadD~~pR~Vt~~~~------lD~~tvagaDrfGNi~~vR~ 1047 (1205)
T KOG1898|consen 1012 ---VFADDPVPRHVTALEL------LDYDTVAGADRFGNIAVVRI 1047 (1205)
T ss_pred ---EEeCCCccceeeEEEE------ecCCceeeccccCcEEEEEC
Confidence 2222222333344444 24456777777777766543
No 487
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=74.29 E-value=80 Score=31.41 Aligned_cols=121 Identities=13% Similarity=0.144 Sum_probs=0.0
Q ss_pred cceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCcccc-----ccccccccccccccceeEEEeeeccccc
Q 007234 6 IRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETT-----SLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (612)
Q Consensus 6 V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~-----~~~s~~~~~~~~~~~~~~~~w~~~~~~~ 80 (612)
|+++ ...++|.+|+|+-.-..|.+.|..+|+.+..+.+....... .++.++
T Consensus 146 iNsV--~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHd---------------------- 201 (299)
T PF14269_consen 146 INSV--DKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHD---------------------- 201 (299)
T ss_pred eeee--eecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccC----------------------
Q ss_pred ccccCCcEEEEEECCCcEEEEEc----------CCCeEEEEeccCCCCCeEEEEE----------------ecCCCEEEE
Q 007234 81 KRKLGSSLLVLGTGGGDVLALAV----------SAGQLKWRLSDCHPGGVSAISF----------------ATHGSCIYS 134 (612)
Q Consensus 81 ~~~~~~~~l~~gs~~g~I~vwd~----------~~~~~~~~~~~~h~~~V~~l~~----------------sp~~~~l~s 134 (612)
.+++-.+..++.|.++|= ..+..+.--.......+..-.+ -|+|+.|++
T Consensus 202 -----ar~~~~~~~~~~IslFDN~~~~~~~~~~s~~~v~~ld~~~~~~~~~~~~~~~~~~~~s~~~G~~Q~L~nGn~li~ 276 (299)
T PF14269_consen 202 -----ARFLNESNDDGTISLFDNANSDFNGTEPSRGLVLELDPETMTVTLVREYSDHPDGFYSPSQGSAQRLPNGNVLIG 276 (299)
T ss_pred -----CEEeccCCCCCEEEEEcCCCCCCCCCcCCCceEEEEECCCCEEEEEEEeecCCCcccccCCCcceECCCCCEEEe
Q ss_pred EecCCcEEEEECCCCceeEEEe
Q 007234 135 AGADGMVCEIDPLTGSLLGKFR 156 (612)
Q Consensus 135 ~s~dg~v~iwd~~~~~~~~~~~ 156 (612)
=+..+.+..++ ..|+.+..+.
T Consensus 277 ~g~~g~~~E~~-~~G~vv~~~~ 297 (299)
T PF14269_consen 277 WGNNGRISEFT-PDGEVVWEAQ 297 (299)
T ss_pred cCCCceEEEEC-CCCCEEEEEE
No 488
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=73.18 E-value=73 Score=31.30 Aligned_cols=78 Identities=10% Similarity=0.145 Sum_probs=49.1
Q ss_pred CcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEe------cCCcEEEEECCCCceeEEEec-----CCCCeeE
Q 007234 96 GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG------ADGMVCEIDPLTGSLLGKFRA-----STKGISC 164 (612)
Q Consensus 96 g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s------~dg~v~iwd~~~~~~~~~~~~-----~~~~v~~ 164 (612)
..|++||..+.+-. .+-.+-.+.|+++.|..+.+.++.|. ....+..||+.+..- ..+.. -.++|..
T Consensus 16 ~~lC~yd~~~~qW~-~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w-~~~~~~~s~~ipgpv~a 93 (281)
T PF12768_consen 16 PGLCLYDTDNSQWS-SPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW-SSLGGGSSNSIPGPVTA 93 (281)
T ss_pred CEEEEEECCCCEee-cCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee-eecCCcccccCCCcEEE
Confidence 44999998877764 33234567899999986666666664 345688899876532 23333 1357777
Q ss_pred EEECC-CCCEEE
Q 007234 165 MAVSS-DGKMLA 175 (612)
Q Consensus 165 l~~sp-dg~~l~ 175 (612)
+.+.. |+..+.
T Consensus 94 ~~~~~~d~~~~~ 105 (281)
T PF12768_consen 94 LTFISNDGSNFW 105 (281)
T ss_pred EEeeccCCceEE
Confidence 77742 443333
No 489
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=72.72 E-value=0.42 Score=48.95 Aligned_cols=135 Identities=12% Similarity=0.136 Sum_probs=90.1
Q ss_pred CcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEE-EEEecCCcEEEEECCCCceeEEEec-CCCCee
Q 007234 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCI-YSAGADGMVCEIDPLTGSLLGKFRA-STKGIS 163 (612)
Q Consensus 86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l-~s~s~dg~v~iwd~~~~~~~~~~~~-~~~~v~ 163 (612)
+..+++++.+..+..||-...... .. .-++...+++|..++..+ +.+-..+.+.+||+.+... +.+.. ....-.
T Consensus 46 ~~nlavaca~tiv~~YD~agq~~l-e~--n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt-qqLE~gg~~s~s 121 (615)
T KOG2247|consen 46 GHNLAVACANTIVIYYDKAGQVIL-EL--NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT-QQLESGGTSSKS 121 (615)
T ss_pred CCceehhhhhhHHHhhhhhcceec-cc--CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhH-HHHhccCcchHH
Confidence 344888888888889985543332 22 234556678888777664 4455778999999875422 11111 111112
Q ss_pred EEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEE
Q 007234 164 CMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIAL 226 (612)
Q Consensus 164 ~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~v 226 (612)
-+.|++.+..++.+. |.+.+++..+.+.+...-.|...+.++++.+.+.. +.++ .|..+.+
T Consensus 122 ll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~v-il~d-cd~~L~v 184 (615)
T KOG2247|consen 122 LLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYV-ILCD-CDNTLSV 184 (615)
T ss_pred HHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEeccccee-eecC-cHHHHHH
Confidence 267899888898888 89999999887766555449999999999998854 4444 4655544
No 490
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=72.68 E-value=1.1e+02 Score=30.81 Aligned_cols=101 Identities=16% Similarity=0.342 Sum_probs=62.3
Q ss_pred CCCeEEEEEecCCCEEEEEecCCc------EEEEECCC--C--ceeE-----EEecCCC--------CeeEEEECCCCCE
Q 007234 117 PGGVSAISFATHGSCIYSAGADGM------VCEIDPLT--G--SLLG-----KFRASTK--------GISCMAVSSDGKM 173 (612)
Q Consensus 117 ~~~V~~l~~sp~~~~l~s~s~dg~------v~iwd~~~--~--~~~~-----~~~~~~~--------~v~~l~~spdg~~ 173 (612)
-+.+.++.+.|++..+++.+.+|. +..+++.. + ..+. .+....+ ...+|++.++|.+
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 467788999876667888888887 66666543 1 1111 1111111 3447888778888
Q ss_pred EEEeCC--------eEEEEEcCCCeeEEEEe---------------cCCCCEEEEEEeeCCcEEEEEE
Q 007234 174 LATAAG--------QLKTFNCSDHKKMQKFS---------------GHPGAVRFMTFSDNGKYVLSSA 218 (612)
Q Consensus 174 l~~~~g--------~i~lwd~~~~~~~~~~~---------------~h~~~v~~l~~sp~~~~l~s~s 218 (612)
+++.-+ .|+.++.. |+....+. ..+...-+|+++|+|+.|+++.
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~ 165 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAM 165 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEE
Confidence 877653 46666655 55544431 1234577899999999666653
No 491
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=72.55 E-value=16 Score=37.46 Aligned_cols=145 Identities=20% Similarity=0.324 Sum_probs=79.5
Q ss_pred CcEEEEEECCCcEEEEEcCCCeEE-EEeccCCCC----CeE-EEEEecCCCEEEEEecCCcEEEE-ECCCCc-----eeE
Q 007234 86 SSLLVLGTGGGDVLALAVSAGQLK-WRLSDCHPG----GVS-AISFATHGSCIYSAGADGMVCEI-DPLTGS-----LLG 153 (612)
Q Consensus 86 ~~~l~~gs~~g~I~vwd~~~~~~~-~~~~~~h~~----~V~-~l~~sp~~~~l~s~s~dg~v~iw-d~~~~~-----~~~ 153 (612)
++.+.+-+. .++.++++...... .++.+...+ .|+ .+..-..|..+..++.||.|.-| |.+.+. .++
T Consensus 232 g~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr~~~~p~l~h~R 310 (733)
T COG4590 232 GKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDVRRDGQPHLNHIR 310 (733)
T ss_pred CCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeeeecCCCCcceeee
Confidence 556666555 66788887654432 122111111 122 22223345668889999999888 554332 222
Q ss_pred EEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCC
Q 007234 154 KFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (612)
Q Consensus 154 ~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~ 231 (612)
.++-...++..+.-..+.+-+++-+ |++.++.....+.+. +..-...+.-+++||.+.++++- +.|.++++.+++
T Consensus 311 ~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL-~~~~~~~~~~~~~Sp~~~~Ll~e--~~gki~~~~l~N 387 (733)
T COG4590 311 NFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLL-FERAYQAPQLVAMSPNQAYLLSE--DQGKIRLAQLEN 387 (733)
T ss_pred ccccCcccceeeccccccceEEEEcCCCceeeeecccCccee-hhhhhcCcceeeeCcccchheee--cCCceEEEEecC
Confidence 2332223333333222334444444 777777654444332 22222345678999999999874 567899999887
Q ss_pred Ccc
Q 007234 232 VKK 234 (612)
Q Consensus 232 ~~~ 234 (612)
...
T Consensus 388 r~P 390 (733)
T COG4590 388 RNP 390 (733)
T ss_pred CCC
Confidence 653
No 492
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=72.21 E-value=31 Score=27.17 Aligned_cols=43 Identities=19% Similarity=0.122 Sum_probs=30.0
Q ss_pred EecCCcEEEEECCCCceeEEEecCCCCeeEEEECCCCCEEEEeC
Q 007234 135 AGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA 178 (612)
Q Consensus 135 ~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~ 178 (612)
+..+|.+..||..+++....+.+ -...+.|+++||+..++.+-
T Consensus 33 ~~~~GRll~ydp~t~~~~vl~~~-L~fpNGVals~d~~~vlv~E 75 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTKETTVLLDG-LYFPNGVALSPDESFVLVAE 75 (89)
T ss_dssp T---EEEEEEETTTTEEEEEEEE-ESSEEEEEE-TTSSEEEEEE
T ss_pred CCCCcCEEEEECCCCeEEEehhC-CCccCeEEEcCCCCEEEEEe
Confidence 34568899999988876555554 33568999999999888776
No 493
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=69.46 E-value=11 Score=22.80 Aligned_cols=27 Identities=22% Similarity=0.587 Sum_probs=23.1
Q ss_pred CcEEEEEECCCcEEEEEcCCCeEEEEe
Q 007234 86 SSLLVLGTGGGDVLALAVSAGQLKWRL 112 (612)
Q Consensus 86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~ 112 (612)
+..+++++.+|.+..+|..+|+.++++
T Consensus 6 ~~~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 6 DGTVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred CCEEEEEcCCCEEEEEEcccCcEEEEc
Confidence 447889999999999999999988764
No 494
>PRK05560 DNA gyrase subunit A; Validated
Probab=68.40 E-value=2.3e+02 Score=32.71 Aligned_cols=189 Identities=14% Similarity=0.117 Sum_probs=92.8
Q ss_pred CcEEEEEECCCcEEEE---EcCC------CeEEEEec--cCCCCCeEEEEEec--CCCEEEEEecCCcEEEEECCCC---
Q 007234 86 SSLLVLGTGGGDVLAL---AVSA------GQLKWRLS--DCHPGGVSAISFAT--HGSCIYSAGADGMVCEIDPLTG--- 149 (612)
Q Consensus 86 ~~~l~~gs~~g~I~vw---d~~~------~~~~~~~~--~~h~~~V~~l~~sp--~~~~l~s~s~dg~v~iwd~~~~--- 149 (612)
...++..+..|.+... ++.. |..+..+. .....-|..+.+.. +...++..+.+|.++.-++...
T Consensus 548 ~d~LllfTs~Grv~~l~v~~iP~~~~~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~~~~~ 627 (805)
T PRK05560 548 HDTLLFFTNRGRVYRLKVYEIPEASRTARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLSEFSNI 627 (805)
T ss_pred CCeEEEEecCCeEEEEEhhhCcCCCcCCCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhHHhhhc
Confidence 5668888888986555 4432 22221111 12223345555552 5678999999999998765432
Q ss_pred ----ceeEEEecCCCCeeEEEECCCCCEEEEeC-CeEEEEEcCC---------CeeEEEEecCCCCEEEE-EEeeCCcEE
Q 007234 150 ----SLLGKFRASTKGISCMAVSSDGKMLATAA-GQLKTFNCSD---------HKKMQKFSGHPGAVRFM-TFSDNGKYV 214 (612)
Q Consensus 150 ----~~~~~~~~~~~~v~~l~~spdg~~l~~~~-g~i~lwd~~~---------~~~~~~~~~h~~~v~~l-~~sp~~~~l 214 (612)
.....++....-+.....+.+...++..+ |.+..+.... |.....+.. ...|.++ .+.+++.++
T Consensus 628 ~r~G~~~ikLke~D~lv~v~~~~~~d~lll~T~~Gr~~r~~~~eIp~~gr~~~Gv~~i~L~~-~E~Vv~~~~v~~~~~~i 706 (805)
T PRK05560 628 RSNGIIAINLDEGDELIGVRLTDGDDDILLATKNGKAIRFPESDVRPMGRTARGVRGIKLRE-GDEVVSMDVVREDSQEI 706 (805)
T ss_pred ccCCceeeccCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCccCcccCCcccccCCC-CCEEEEEEEEcCCCcEE
Confidence 22233332222333333344444555555 7655554421 122223322 2234433 344443356
Q ss_pred EEEEcCCCeEEEEEcCCCcccc----ceeeEeecC-CceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECC
Q 007234 215 LSSAVGERYIALWRTDGVKKQS----ASCVLAMEH-PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (612)
Q Consensus 215 ~s~s~~d~~i~vwd~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~ 282 (612)
+..+ ..|.++...+..-.... ......+.. ....+..... .+...++..+.+|.+..++..
T Consensus 707 l~vT-k~G~iKr~~l~e~~~~~R~~kG~~~lkl~~~~d~lv~v~~v------~~~~~v~i~T~~G~~lrf~~~ 772 (805)
T PRK05560 707 LTVT-ENGYGKRTPVSEYRLQGRGGKGVITIKITEKNGKLVGALPV------DDDDEIMLITDSGKLIRTRVS 772 (805)
T ss_pred EEEE-eCCeEEEEEHHHhhccCCCCCcEEeeeccCCCCeEEEEEEe------cCCCeEEEEecCCeEEEEEHH
Confidence 6665 57888887654321110 112222222 2333333333 223456677778887777653
No 495
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=68.36 E-value=1.3e+02 Score=33.55 Aligned_cols=91 Identities=19% Similarity=0.230 Sum_probs=56.4
Q ss_pred EEEEEecCCCEEEEEecCC-----cEEEEECCCCceeEEEe---cCCCCeeEEEECCCCCEEEEeC-CeEEEEEcCCCee
Q 007234 121 SAISFATHGSCIYSAGADG-----MVCEIDPLTGSLLGKFR---ASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKK 191 (612)
Q Consensus 121 ~~l~~sp~~~~l~s~s~dg-----~v~iwd~~~~~~~~~~~---~~~~~v~~l~~spdg~~l~~~~-g~i~lwd~~~~~~ 191 (612)
..++|-|+|..+++-+.|| .|..+.- .|-....+. +....+..++|+-....++.+. +.+.+|-..+-..
T Consensus 250 ~~LSWkpqgS~~ati~td~~~~S~~ViFfEr-NGLrHGef~lr~~~dEk~~~~~wn~~s~vlav~~~n~~~lwttkNyhW 328 (1243)
T COG5290 250 HQLSWKPQGSKYATIGTDGCSTSESVIFFER-NGLRHGEFDLRVGCDEKAFLENWNLLSTVLAVAEGNLLKLWTTKNYHW 328 (1243)
T ss_pred hccccccCCceeeeeccCCCCCcceEEEEcc-CCcccCCccccCCchhhhhhhhhhHHHHHHHHhhcceEEEEEccceEE
Confidence 3489999999999877554 3555542 222111111 1123456677876666777666 7999998877655
Q ss_pred EEEEecCCCCEEEEEEeeCCc
Q 007234 192 MQKFSGHPGAVRFMTFSDNGK 212 (612)
Q Consensus 192 ~~~~~~h~~~v~~l~~sp~~~ 212 (612)
..+..-.-..+.-+.|+|...
T Consensus 329 YLK~e~~ip~~s~vkwhpe~~ 349 (1243)
T COG5290 329 YLKVERQIPGISYVKWHPEEK 349 (1243)
T ss_pred EEEEeecCCCcceeeeccccC
Confidence 444444445566778888654
No 496
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=68.27 E-value=1.9e+02 Score=31.79 Aligned_cols=94 Identities=9% Similarity=0.017 Sum_probs=51.5
Q ss_pred CCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCc---EEEE--ECCC--CceeEEEecCC-CCeeEE
Q 007234 94 GGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGM---VCEI--DPLT--GSLLGKFRAST-KGISCM 165 (612)
Q Consensus 94 ~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~---v~iw--d~~~--~~~~~~~~~~~-~~v~~l 165 (612)
..-++++-|+.+|+.+.... .+...+++|.+|++.|+-...|.. =++| .+.+ .+-...+.... ....++
T Consensus 153 e~y~lr~kdL~tg~~~~d~i---~~~~~~~~Wa~d~~~lfYt~~d~~~rp~kv~~h~~gt~~~~d~lvyeE~d~~f~~~v 229 (682)
T COG1770 153 EQYTLRFKDLATGEELPDEI---TNTSGSFAWAADGKTLFYTRLDENHRPDKVWRHRLGTPGSSDELVYEEKDDRFFLSV 229 (682)
T ss_pred cEEEEEEEecccccccchhh---cccccceEEecCCCeEEEEEEcCCCCcceEEEEecCCCCCcceEEEEcCCCcEEEEe
Confidence 33447788888877654332 234667889988887665554322 2233 3333 11112222222 233445
Q ss_pred EECCCCCEEEEeC-----CeEEEEEcCCCe
Q 007234 166 AVSSDGKMLATAA-----GQLKTFNCSDHK 190 (612)
Q Consensus 166 ~~spdg~~l~~~~-----g~i~lwd~~~~~ 190 (612)
.-+.++++++... +.+++.+.+...
T Consensus 230 ~~s~s~~yi~i~~~~~~tsE~~ll~a~~p~ 259 (682)
T COG1770 230 GRSRSEAYIVISLGSHITSEVRLLDADDPE 259 (682)
T ss_pred eeccCCceEEEEcCCCcceeEEEEecCCCC
Confidence 5555677776543 578888887654
No 497
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=68.23 E-value=1.6e+02 Score=30.88 Aligned_cols=32 Identities=6% Similarity=0.175 Sum_probs=24.2
Q ss_pred CCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCC
Q 007234 200 GAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (612)
Q Consensus 200 ~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~ 232 (612)
..|.+++..+..+.+++.. .++.|.+|++..+
T Consensus 190 ~~I~~v~~d~~r~~ly~l~-~~~~Iq~w~l~~~ 221 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLT-SDGSIQVWDLGPG 221 (422)
T ss_dssp --EEEEEEETTTTEEEEEE-SSE-EEEEEE-SS
T ss_pred hceeeEEecCCcCEEEEEe-CCCcEEEEEEeCC
Confidence 4488899988888888887 6999999999763
No 498
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=67.61 E-value=30 Score=27.02 Aligned_cols=46 Identities=20% Similarity=0.178 Sum_probs=31.2
Q ss_pred CcEEEEECCCCceeEEEecCCCCeeEEEECCCCCEEEEeC---CeEEEEEcC
Q 007234 139 GMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA---GQLKTFNCS 187 (612)
Q Consensus 139 g~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~---g~i~lwd~~ 187 (612)
+.|..||... .+.....-...+.|.++|++++|.+++ +.|++|..+
T Consensus 36 ~~Vvyyd~~~---~~~va~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 36 GNVVYYDGKE---VKVVASGFSFANGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred ceEEEEeCCE---eEEeeccCCCCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 4566666432 222222334567899999999999988 799998764
No 499
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=67.34 E-value=10 Score=41.50 Aligned_cols=34 Identities=21% Similarity=0.344 Sum_probs=27.9
Q ss_pred EEEcC----CCCEEEEEeCCCcEEEEECCCCcEEEEee
Q 007234 11 TSFSP----ALDYFAICSGDARIKIWDTLKGQVQTEFA 44 (612)
Q Consensus 11 ~~fsp----dg~~las~s~dg~i~iwd~~~~~~~~~~~ 44 (612)
.+.++ +..++++.+.|+++|+||+.+++++.+..
T Consensus 220 ~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 220 LAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp EEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEEE
T ss_pred EEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEec
Confidence 35666 67799999999999999999999988765
No 500
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=65.99 E-value=1.5e+02 Score=29.70 Aligned_cols=104 Identities=8% Similarity=0.123 Sum_probs=51.4
Q ss_pred CcEEEEEECCC-----cEEEEEcCCCeE--EEEeccCCCCCe--EEEEEecCCCEEEEEec-----CCcEEEEECCCCce
Q 007234 86 SSLLVLGTGGG-----DVLALAVSAGQL--KWRLSDCHPGGV--SAISFATHGSCIYSAGA-----DGMVCEIDPLTGSL 151 (612)
Q Consensus 86 ~~~l~~gs~~g-----~I~vwd~~~~~~--~~~~~~~h~~~V--~~l~~sp~~~~l~s~s~-----dg~v~iwd~~~~~~ 151 (612)
+.++++|+.++ .+..||+.+... .+.....-..+. .+++. -+++..+.|+. ...+..||+.+.+-
T Consensus 73 ~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W 151 (323)
T TIGR03548 73 NGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQEW 151 (323)
T ss_pred CEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCCCe
Confidence 56667776543 477788877653 111111111111 12222 24556666653 24588889876543
Q ss_pred eE--EEecCCCCeeEEEECCCCCEEEEeC--C----eEEEEEcCCCee
Q 007234 152 LG--KFRASTKGISCMAVSSDGKMLATAA--G----QLKTFNCSDHKK 191 (612)
Q Consensus 152 ~~--~~~~~~~~v~~l~~spdg~~l~~~~--g----~i~lwd~~~~~~ 191 (612)
.. .+... ......+...++++.+.|+ + .+..||.++.+-
T Consensus 152 ~~~~~~p~~-~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 152 FELPDFPGE-PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred eECCCCCCC-CCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence 22 12211 1112222233566777665 2 467889887653
Done!