Query 007234
Match_columns 612
No_of_seqs 562 out of 3980
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 20:37:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007234.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007234hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyh_C Platelet-activating fac 100.0 5.5E-41 1.9E-45 352.0 37.3 281 2-379 107-409 (410)
2 1got_B GT-beta; complex (GTP-b 100.0 3.9E-40 1.3E-44 336.6 39.0 282 2-378 54-340 (340)
3 1nr0_A Actin interacting prote 100.0 9.1E-40 3.1E-44 360.7 38.9 347 2-380 58-566 (611)
4 3ow8_A WD repeat-containing pr 100.0 1.4E-39 4.9E-44 329.5 37.2 281 2-379 31-319 (321)
5 2pbi_B Guanine nucleotide-bind 100.0 4.2E-39 1.5E-43 330.7 38.2 282 2-378 63-354 (354)
6 1nr0_A Actin interacting prote 100.0 1.5E-38 5.1E-43 351.0 38.4 326 2-379 146-609 (611)
7 2ynn_A Coatomer subunit beta'; 100.0 6.9E-38 2.4E-42 314.7 37.5 281 2-380 12-301 (304)
8 4ery_A WD repeat-containing pr 100.0 4.1E-37 1.4E-41 310.0 38.3 281 2-379 22-310 (312)
9 2ymu_A WD-40 repeat protein; u 100.0 3.8E-37 1.3E-41 337.3 40.4 315 2-378 261-577 (577)
10 3frx_A Guanine nucleotide-bind 100.0 6.2E-37 2.1E-41 309.9 38.8 287 2-380 16-316 (319)
11 3iz6_a 40S ribosomal protein R 100.0 2.9E-38 1E-42 327.8 29.1 289 2-380 65-374 (380)
12 3fm0_A Protein CIAO1; WDR39,SG 100.0 4.8E-37 1.6E-41 314.3 37.2 294 5-381 18-335 (345)
13 4gqb_B Methylosome protein 50; 100.0 4.2E-38 1.4E-42 321.5 29.2 290 4-380 31-330 (344)
14 1erj_A Transcriptional repress 100.0 1E-36 3.6E-41 317.6 39.7 303 2-380 63-388 (393)
15 4g56_B MGC81050 protein; prote 100.0 1.8E-37 6E-42 319.0 27.8 282 2-381 41-343 (357)
16 2xzm_R RACK1; ribosome, transl 100.0 8.7E-36 3E-40 304.7 37.6 292 2-380 20-339 (343)
17 1r5m_A SIR4-interacting protei 100.0 2.2E-36 7.6E-41 317.0 33.6 338 3-379 45-423 (425)
18 2ymu_A WD-40 repeat protein; u 100.0 1.4E-35 4.8E-40 324.8 39.7 317 2-380 220-538 (577)
19 2hes_X YDR267CP; beta-propelle 100.0 2.3E-35 7.8E-40 299.9 35.5 287 2-380 13-327 (330)
20 3ow8_A WD repeat-containing pr 100.0 6.9E-35 2.4E-39 295.0 36.0 240 2-282 79-320 (321)
21 3vl1_A 26S proteasome regulato 100.0 5.1E-36 1.7E-40 314.8 24.7 321 11-381 62-419 (420)
22 3zwl_B Eukaryotic translation 100.0 5.5E-34 1.9E-38 292.9 38.9 295 2-381 31-346 (369)
23 1gxr_A ESG1, transducin-like e 100.0 6.9E-35 2.3E-39 295.8 31.6 320 2-379 8-335 (337)
24 1vyh_C Platelet-activating fac 100.0 1E-34 3.6E-39 304.2 33.0 239 2-281 149-409 (410)
25 2pm9_A Protein WEB1, protein t 100.0 6.4E-36 2.2E-40 313.3 23.6 328 5-379 14-412 (416)
26 4aow_A Guanine nucleotide-bind 100.0 1.5E-33 5.1E-38 286.7 38.2 289 2-380 37-336 (340)
27 2ynn_A Coatomer subunit beta'; 100.0 8.4E-34 2.9E-38 284.8 35.1 252 38-381 4-259 (304)
28 3dm0_A Maltose-binding peripla 100.0 5.6E-34 1.9E-38 319.4 37.1 299 2-380 381-692 (694)
29 4gqb_B Methylosome protein 50; 100.0 5.1E-34 1.8E-38 291.2 32.8 239 4-285 83-333 (344)
30 1k8k_C P40, ARP2/3 complex 41 100.0 6.3E-34 2.2E-38 293.3 32.7 317 2-381 7-361 (372)
31 3sfz_A APAF-1, apoptotic pepti 100.0 8.3E-34 2.8E-38 338.7 38.2 325 2-381 614-1034(1249)
32 3mkq_A Coatomer beta'-subunit; 100.0 1.6E-33 5.4E-38 321.5 36.2 265 2-308 12-283 (814)
33 4h5i_A Guanine nucleotide-exch 100.0 6.9E-34 2.4E-38 293.1 29.7 292 5-379 16-341 (365)
34 3i2n_A WD repeat-containing pr 100.0 2.2E-33 7.5E-38 287.3 32.3 310 2-381 17-353 (357)
35 1got_B GT-beta; complex (GTP-b 100.0 9.5E-33 3.3E-37 281.8 36.0 236 3-280 97-340 (340)
36 2ovr_B FBW7, F-BOX/WD repeat p 100.0 9E-33 3.1E-37 292.8 37.2 304 12-380 124-441 (445)
37 3dwl_C Actin-related protein 2 100.0 1.7E-34 5.8E-39 298.7 22.6 241 3-282 11-280 (377)
38 3ei3_B DNA damage-binding prot 100.0 5.1E-33 1.7E-37 288.4 33.7 280 2-380 72-381 (383)
39 3k26_A Polycomb protein EED; W 100.0 2.4E-33 8.3E-38 287.9 30.4 297 2-379 17-364 (366)
40 1sq9_A Antiviral protein SKI8; 100.0 6.8E-33 2.3E-37 288.5 33.8 305 2-381 15-395 (397)
41 3sfz_A APAF-1, apoptotic pepti 100.0 4.5E-33 1.6E-37 332.4 37.0 339 2-381 656-1116(1249)
42 2pm7_B Protein transport prote 100.0 7.1E-33 2.4E-37 277.1 31.2 247 2-282 8-284 (297)
43 2j04_B YDR362CP, TAU91; beta p 100.0 8.1E-34 2.8E-38 304.7 23.6 311 19-379 175-515 (524)
44 2oaj_A Protein SNI1; WD40 repe 100.0 1.1E-32 3.6E-37 315.8 33.8 339 3-381 58-605 (902)
45 3frx_A Guanine nucleotide-bind 100.0 7.2E-32 2.5E-36 272.7 36.1 241 2-284 64-318 (319)
46 1erj_A Transcriptional repress 100.0 4.8E-32 1.7E-36 282.3 35.5 239 10-283 128-389 (393)
47 2oaj_A Protein SNI1; WD40 repe 100.0 1.4E-32 4.7E-37 314.9 34.0 197 3-234 17-245 (902)
48 1pgu_A Actin interacting prote 100.0 4E-32 1.4E-36 299.3 36.1 328 3-381 63-519 (615)
49 1pgu_A Actin interacting prote 100.0 3.4E-32 1.2E-36 299.8 35.5 330 3-380 160-613 (615)
50 4gga_A P55CDC, cell division c 100.0 1.3E-31 4.4E-36 281.7 37.6 271 11-380 111-394 (420)
51 3odt_A Protein DOA1; ubiquitin 100.0 1.8E-31 6.2E-36 267.8 36.6 273 2-381 17-296 (313)
52 3dw8_B Serine/threonine-protei 100.0 1.5E-32 5.2E-37 290.6 29.6 257 3-287 28-377 (447)
53 3v7d_B Cell division control p 100.0 1.3E-31 4.4E-36 285.3 36.8 306 12-379 127-461 (464)
54 3gre_A Serine/threonine-protei 100.0 8.6E-33 2.9E-37 292.0 26.5 315 2-378 62-437 (437)
55 4aez_A CDC20, WD repeat-contai 100.0 1.9E-31 6.6E-36 278.6 36.4 279 6-381 94-380 (401)
56 4a11_B DNA excision repair pro 100.0 7.4E-32 2.5E-36 281.1 33.0 301 2-381 42-365 (408)
57 1gxr_A ESG1, transducin-like e 100.0 1.8E-31 6E-36 270.7 33.9 276 2-327 50-334 (337)
58 4e54_B DNA damage-binding prot 100.0 1E-32 3.5E-37 291.5 25.5 202 4-235 120-331 (435)
59 2pbi_B Guanine nucleotide-bind 100.0 2.2E-31 7.6E-36 273.2 34.7 236 4-280 107-354 (354)
60 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.4E-31 4.9E-36 273.6 33.2 252 2-288 60-340 (345)
61 2hes_X YDR267CP; beta-propelle 100.0 8.8E-32 3E-36 273.4 30.8 242 2-283 57-328 (330)
62 2xzm_R RACK1; ribosome, transl 100.0 2.9E-31 9.9E-36 271.1 33.8 242 2-285 75-342 (343)
63 4g56_B MGC81050 protein; prote 100.0 5.2E-32 1.8E-36 278.2 28.1 240 3-285 94-345 (357)
64 3iz6_a 40S ribosomal protein R 100.0 1.4E-31 4.6E-36 277.6 30.1 245 2-285 107-377 (380)
65 3bg1_A Protein SEC13 homolog; 100.0 2.7E-32 9.2E-37 275.4 24.0 246 2-282 12-292 (316)
66 4ggc_A P55CDC, cell division c 100.0 1.4E-30 4.9E-35 262.0 36.2 270 11-379 31-313 (318)
67 2pm9_A Protein WEB1, protein t 100.0 1E-31 3.5E-36 281.3 26.3 246 3-287 67-341 (416)
68 4ery_A WD repeat-containing pr 100.0 1.7E-30 5.9E-35 261.5 33.8 240 2-282 64-311 (312)
69 3mkq_A Coatomer beta'-subunit; 100.0 5.8E-31 2E-35 300.2 33.6 244 2-285 54-304 (814)
70 1p22_A F-BOX/WD-repeat protein 100.0 1.8E-30 6.2E-35 274.2 34.9 272 12-381 138-414 (435)
71 3vl1_A 26S proteasome regulato 100.0 6E-31 2.1E-35 276.0 30.4 236 11-284 103-366 (420)
72 1r5m_A SIR4-interacting protei 100.0 5E-31 1.7E-35 276.2 29.5 276 3-327 108-422 (425)
73 3f3f_A Nucleoporin SEH1; struc 100.0 1.2E-30 4.2E-35 265.0 31.4 252 2-288 10-342 (351)
74 1yfq_A Cell cycle arrest prote 100.0 5.1E-31 1.7E-35 268.3 28.2 277 2-378 10-321 (342)
75 3jrp_A Fusion protein of prote 100.0 1.9E-30 6.6E-35 267.6 31.7 250 2-285 10-289 (379)
76 4aez_A CDC20, WD repeat-contai 100.0 3.1E-30 1.1E-34 269.4 33.2 247 3-289 134-386 (401)
77 2pm7_B Protein transport prote 100.0 3.1E-30 1.1E-34 257.9 29.8 235 86-379 21-283 (297)
78 2aq5_A Coronin-1A; WD40 repeat 100.0 3E-30 1E-34 269.5 29.5 280 11-381 40-342 (402)
79 3k26_A Polycomb protein EED; W 100.0 1.3E-30 4.5E-35 267.5 26.2 243 4-283 70-366 (366)
80 3mmy_A MRNA export factor; mRN 100.0 2.1E-29 7.1E-34 258.5 33.5 280 2-379 38-344 (368)
81 3dm0_A Maltose-binding peripla 100.0 2.2E-29 7.4E-34 282.1 34.8 241 2-282 429-692 (694)
82 2j04_A TAU60, YPL007P, hypothe 100.0 2.7E-30 9.3E-35 270.9 25.3 295 5-370 17-350 (588)
83 1k8k_C P40, ARP2/3 complex 41 100.0 1.5E-29 5.3E-34 260.4 30.0 250 2-287 51-365 (372)
84 1sq9_A Antiviral protein SKI8; 100.0 1E-29 3.5E-34 264.4 28.1 248 2-285 61-397 (397)
85 4aow_A Guanine nucleotide-bind 100.0 1.2E-28 4E-33 250.4 35.2 247 2-285 85-339 (340)
86 3v7d_B Cell division control p 100.0 6.2E-29 2.1E-33 264.6 33.5 243 2-289 161-427 (464)
87 3jro_A Fusion protein of prote 100.0 4.5E-30 1.5E-34 289.7 25.5 251 2-286 8-288 (753)
88 3f3f_A Nucleoporin SEH1; struc 100.0 3.7E-29 1.3E-33 254.1 29.6 276 86-381 23-337 (351)
89 3i2n_A WD repeat-containing pr 100.0 1.7E-29 5.9E-34 258.3 27.2 253 3-286 65-356 (357)
90 3gre_A Serine/threonine-protei 100.0 2.1E-30 7.2E-35 273.7 20.9 297 12-381 34-359 (437)
91 3bg1_A Protein SEC13 homolog; 100.0 1E-29 3.5E-34 256.5 24.2 234 86-379 25-291 (316)
92 3jrp_A Fusion protein of prote 100.0 3.9E-29 1.3E-33 257.8 29.0 257 38-380 2-286 (379)
93 2j04_B YDR362CP, TAU91; beta p 100.0 4.7E-30 1.6E-34 275.5 22.3 245 3-283 207-517 (524)
94 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1E-28 3.5E-33 262.0 31.9 256 4-281 5-337 (450)
95 3dwl_C Actin-related protein 2 100.0 1E-29 3.5E-34 262.7 22.0 197 2-230 54-280 (377)
96 3zwl_B Eukaryotic translation 100.0 3.4E-28 1.2E-32 249.5 33.2 243 2-287 73-350 (369)
97 4gga_A P55CDC, cell division c 100.0 5.8E-28 2E-32 253.8 35.2 244 3-288 147-400 (420)
98 3lrv_A PRE-mRNA-splicing facto 100.0 1.5E-28 5.2E-33 250.9 29.7 234 12-286 43-295 (343)
99 3odt_A Protein DOA1; ubiquitin 100.0 1.3E-27 4.3E-32 239.7 33.0 236 3-288 59-301 (313)
100 2xyi_A Probable histone-bindin 100.0 1.9E-28 6.4E-33 258.4 28.0 249 2-285 127-412 (430)
101 3ei3_B DNA damage-binding prot 100.0 1.4E-28 4.7E-33 255.0 26.5 240 2-283 117-382 (383)
102 2aq5_A Coronin-1A; WD40 repeat 100.0 2.2E-28 7.5E-33 255.4 27.6 247 2-285 80-344 (402)
103 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.5E-27 5.2E-32 252.6 33.6 263 2-322 158-430 (445)
104 3vu4_A KMHSV2; beta-propeller 100.0 2.7E-27 9.4E-32 242.8 33.0 294 2-380 18-335 (355)
105 4h5i_A Guanine nucleotide-exch 100.0 8.9E-28 3E-32 247.3 27.3 193 10-232 138-344 (365)
106 4e54_B DNA damage-binding prot 100.0 1.7E-28 5.9E-33 259.1 21.6 247 2-286 163-433 (435)
107 4ggc_A P55CDC, cell division c 100.0 1.3E-26 4.5E-31 232.9 33.9 240 3-284 67-316 (318)
108 2xyi_A Probable histone-bindin 100.0 2.9E-27 9.8E-32 249.3 29.9 254 67-381 130-410 (430)
109 3bws_A Protein LP49; two-domai 100.0 1.3E-26 4.3E-31 244.2 34.3 279 10-380 127-431 (433)
110 4gq1_A NUP37; propeller, trans 100.0 2.2E-27 7.6E-32 247.0 26.9 231 86-378 101-386 (393)
111 1p22_A F-BOX/WD-repeat protein 100.0 6.8E-27 2.3E-31 246.8 28.9 239 2-287 172-418 (435)
112 1l0q_A Surface layer protein; 100.0 1.6E-25 5.5E-30 232.4 37.7 265 18-381 3-275 (391)
113 3jro_A Fusion protein of prote 100.0 4.7E-27 1.6E-31 265.1 26.8 254 41-380 3-284 (753)
114 4a11_B DNA excision repair pro 100.0 3.7E-26 1.3E-30 237.9 31.1 252 2-292 98-374 (408)
115 3dw8_B Serine/threonine-protei 100.0 1.2E-26 4.2E-31 245.2 26.8 257 4-281 94-444 (447)
116 1yfq_A Cell cycle arrest prote 99.9 4.5E-26 1.5E-30 231.7 24.8 248 67-381 13-282 (342)
117 2vdu_B TRNA (guanine-N(7)-)-me 99.9 1.3E-25 4.4E-30 238.1 29.2 240 5-282 104-390 (450)
118 3lrv_A PRE-mRNA-splicing facto 99.9 6.8E-26 2.3E-30 231.2 26.0 233 4-280 77-330 (343)
119 2j04_A TAU60, YPL007P, hypothe 99.9 7.5E-27 2.6E-31 244.9 18.2 249 3-319 85-350 (588)
120 4gq1_A NUP37; propeller, trans 99.9 4.3E-26 1.5E-30 237.3 22.6 239 12-281 96-387 (393)
121 1l0q_A Surface layer protein; 99.9 3.5E-24 1.2E-28 222.2 37.0 240 9-291 35-283 (391)
122 2w18_A PALB2, fancn, partner a 99.9 1.8E-24 6.1E-29 213.5 32.1 248 19-281 56-355 (356)
123 3mmy_A MRNA export factor; mRN 99.9 6.9E-25 2.4E-29 224.7 27.1 276 31-381 23-304 (368)
124 2w18_A PALB2, fancn, partner a 99.9 3.4E-25 1.1E-29 218.6 21.7 210 4-229 112-355 (356)
125 1nir_A Nitrite reductase; hemo 99.9 3.4E-24 1.2E-28 231.6 31.4 326 12-380 144-513 (543)
126 3vu4_A KMHSV2; beta-propeller 99.9 3E-24 1E-28 220.2 27.3 232 11-285 64-338 (355)
127 2hqs_A Protein TOLB; TOLB, PAL 99.9 1.5E-23 5.2E-28 219.5 32.0 311 5-363 64-411 (415)
128 3bws_A Protein LP49; two-domai 99.9 3.9E-23 1.3E-27 217.4 32.6 236 4-283 170-432 (433)
129 2ecf_A Dipeptidyl peptidase IV 99.9 7E-23 2.4E-27 231.1 30.9 341 4-379 37-457 (741)
130 3vgz_A Uncharacterized protein 99.9 8.7E-21 3E-25 193.4 36.5 238 10-287 45-307 (353)
131 3u4y_A Uncharacterized protein 99.9 1.6E-21 5.4E-26 197.3 29.5 287 12-382 4-305 (331)
132 1xfd_A DIP, dipeptidyl aminope 99.9 2.2E-22 7.5E-27 226.3 22.9 317 10-371 21-431 (723)
133 1nir_A Nitrite reductase; hemo 99.9 4.6E-21 1.6E-25 207.1 28.9 274 86-381 149-458 (543)
134 2hqs_A Protein TOLB; TOLB, PAL 99.9 1.5E-20 5.2E-25 196.7 31.1 225 17-285 143-389 (415)
135 2z3z_A Dipeptidyl aminopeptida 99.9 1.9E-21 6.4E-26 218.1 24.8 338 5-381 27-435 (706)
136 1pby_B Quinohemoprotein amine 99.9 1.4E-20 4.7E-25 190.4 28.3 265 18-381 2-310 (337)
137 1ri6_A Putative isomerase YBHE 99.9 5E-20 1.7E-24 186.7 30.8 272 19-380 7-307 (343)
138 2ojh_A Uncharacterized protein 99.9 2.7E-20 9.4E-25 184.0 26.1 221 23-285 18-260 (297)
139 3u4y_A Uncharacterized protein 99.9 1.2E-19 4.2E-24 183.3 29.6 238 10-285 44-306 (331)
140 1ri6_A Putative isomerase YBHE 99.9 2.8E-19 9.6E-24 181.2 30.7 240 5-285 39-312 (343)
141 1k32_A Tricorn protease; prote 99.9 2.3E-20 7.9E-25 218.2 25.8 267 87-379 215-500 (1045)
142 1k32_A Tricorn protease; prote 99.8 1.1E-19 3.7E-24 212.6 28.5 241 10-284 249-503 (1045)
143 2ojh_A Uncharacterized protein 99.8 1.1E-19 3.8E-24 179.6 23.4 231 3-274 41-293 (297)
144 1jmx_B Amine dehydrogenase; ox 99.8 2E-19 7E-24 182.8 25.7 237 11-290 5-332 (349)
145 3hfq_A Uncharacterized protein 99.8 1.8E-18 6.1E-23 176.2 31.2 242 11-287 45-323 (347)
146 2ecf_A Dipeptidyl peptidase IV 99.8 2.4E-19 8.3E-24 202.1 25.4 280 68-380 39-412 (741)
147 3hfq_A Uncharacterized protein 99.8 1E-17 3.5E-22 170.6 34.8 232 86-379 51-315 (347)
148 3vgz_A Uncharacterized protein 99.8 7E-18 2.4E-22 171.8 32.1 233 10-274 93-335 (353)
149 1pby_B Quinohemoprotein amine 99.8 1.8E-18 6E-23 174.8 27.3 242 6-290 36-317 (337)
150 3o4h_A Acylamino-acid-releasin 99.8 4.9E-19 1.7E-23 193.8 24.8 232 4-287 22-278 (582)
151 2oit_A Nucleoporin 214KDA; NH2 99.8 2.7E-19 9.2E-24 188.0 20.3 213 5-233 38-280 (434)
152 1xfd_A DIP, dipeptidyl aminope 99.8 1.5E-18 5.1E-23 195.0 26.1 238 6-283 63-393 (723)
153 1z68_A Fibroblast activation p 99.8 3.4E-19 1.2E-23 200.2 20.3 324 10-379 20-441 (719)
154 3scy_A Hypothetical bacterial 99.8 1.9E-17 6.4E-22 169.7 31.4 239 11-287 55-343 (361)
155 2z3z_A Dipeptidyl aminopeptida 99.8 4.8E-18 1.6E-22 190.4 27.9 254 4-285 121-437 (706)
156 3pe7_A Oligogalacturonate lyas 99.8 7.3E-18 2.5E-22 174.3 25.8 238 11-286 41-332 (388)
157 1jof_A Carboxy-CIS,CIS-muconat 99.8 4.4E-17 1.5E-21 167.4 30.5 239 10-284 44-342 (365)
158 4a5s_A Dipeptidyl peptidase 4 99.8 4.8E-17 1.6E-21 183.1 32.3 246 10-287 21-357 (740)
159 3scy_A Hypothetical bacterial 99.8 2.9E-16 9.8E-21 160.8 32.6 279 12-379 8-335 (361)
160 2oit_A Nucleoporin 214KDA; NH2 99.8 8.7E-17 3E-21 168.8 25.2 196 4-229 93-331 (434)
161 1jmx_B Amine dehydrogenase; ox 99.7 2.5E-16 8.7E-21 159.8 25.8 145 86-235 11-179 (349)
162 1jof_A Carboxy-CIS,CIS-muconat 99.7 7.2E-16 2.5E-20 158.2 28.4 191 86-282 51-290 (365)
163 1q7f_A NHL, brain tumor CG1071 99.7 6.8E-15 2.3E-19 145.3 32.2 240 10-284 34-281 (286)
164 3c5m_A Oligogalacturonate lyas 99.7 3E-16 1E-20 162.3 20.4 235 6-285 38-331 (396)
165 1z68_A Fibroblast activation p 99.7 2.3E-16 8E-21 177.1 20.8 275 86-380 27-390 (719)
166 3fvz_A Peptidyl-glycine alpha- 99.7 4.4E-15 1.5E-19 150.0 27.5 239 5-283 25-322 (329)
167 3azo_A Aminopeptidase; POP fam 99.7 5.2E-15 1.8E-19 164.4 27.4 250 3-285 23-327 (662)
168 3o4h_A Acylamino-acid-releasin 99.7 7.4E-16 2.5E-20 168.5 19.0 183 86-287 33-231 (582)
169 2dg1_A DRP35, lactonase; beta 99.7 2.4E-14 8.2E-19 144.6 27.2 242 1-282 3-262 (333)
170 2oiz_A Aromatic amine dehydrog 99.6 2.5E-14 8.7E-19 146.3 24.9 291 15-362 13-360 (361)
171 3pe7_A Oligogalacturonate lyas 99.6 3.9E-14 1.3E-18 146.1 24.7 218 30-286 13-276 (388)
172 1qks_A Cytochrome CD1 nitrite 99.6 5.5E-13 1.9E-17 143.7 34.4 233 13-283 163-421 (567)
173 4a5s_A Dipeptidyl peptidase 4 99.6 9.1E-14 3.1E-18 156.4 26.6 197 68-285 19-296 (740)
174 2oiz_A Aromatic amine dehydrog 99.6 2.4E-13 8.1E-18 139.1 26.8 237 10-290 54-343 (361)
175 3fvz_A Peptidyl-glycine alpha- 99.6 3.6E-13 1.2E-17 135.9 27.6 223 96-380 69-321 (329)
176 3no2_A Uncharacterized protein 99.6 3.1E-13 1.1E-17 132.5 26.0 230 15-288 3-257 (276)
177 2xdw_A Prolyl endopeptidase; a 99.6 5.8E-13 2E-17 149.1 31.4 236 10-285 129-416 (710)
178 1rwi_B Serine/threonine-protei 99.6 4.7E-13 1.6E-17 130.6 25.9 237 10-286 28-267 (270)
179 3e5z_A Putative gluconolactona 99.6 6.6E-13 2.2E-17 131.7 25.7 231 10-286 32-289 (296)
180 3c5m_A Oligogalacturonate lyas 99.6 2.7E-13 9.1E-18 140.0 22.3 242 11-285 86-386 (396)
181 3dsm_A Uncharacterized protein 99.6 1.4E-12 4.6E-17 131.6 26.9 234 12-290 50-308 (328)
182 2gop_A Trilobed protease; beta 99.6 1.7E-12 5.9E-17 131.6 27.9 213 12-283 21-291 (347)
183 1q7f_A NHL, brain tumor CG1071 99.6 3.2E-12 1.1E-16 125.9 28.7 181 86-281 41-236 (286)
184 2dg1_A DRP35, lactonase; beta 99.5 6.6E-12 2.3E-16 126.6 31.4 224 10-274 49-301 (333)
185 3azo_A Aminopeptidase; POP fam 99.5 3.4E-13 1.2E-17 149.7 23.3 238 12-286 83-372 (662)
186 2gop_A Trilobed protease; beta 99.5 8.7E-13 3E-17 133.8 23.8 217 10-282 63-330 (347)
187 2xdw_A Prolyl endopeptidase; a 99.5 3.7E-12 1.3E-16 142.5 30.8 202 68-288 127-373 (710)
188 3e5z_A Putative gluconolactona 99.5 1.2E-11 3.9E-16 122.6 27.9 190 68-282 30-245 (296)
189 2z2n_A Virginiamycin B lyase; 99.5 1.3E-10 4.4E-15 114.7 34.7 234 5-281 16-253 (299)
190 1qks_A Cytochrome CD1 nitrite 99.5 3.4E-11 1.2E-15 129.7 32.1 193 86-290 167-380 (567)
191 2bkl_A Prolyl endopeptidase; m 99.5 2.8E-12 9.7E-17 143.1 23.3 235 10-286 125-400 (695)
192 2bkl_A Prolyl endopeptidase; m 99.5 4.2E-12 1.4E-16 141.7 24.5 237 13-282 75-348 (695)
193 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 3E-11 1E-15 120.5 27.8 237 10-283 22-299 (314)
194 3dsm_A Uncharacterized protein 99.4 9.7E-11 3.3E-15 117.9 29.5 223 25-286 15-256 (328)
195 3no2_A Uncharacterized protein 99.4 9.9E-12 3.4E-16 121.8 20.9 189 86-291 5-203 (276)
196 3g4e_A Regucalcin; six bladed 99.4 2.2E-10 7.5E-15 113.6 30.5 200 68-287 15-233 (297)
197 1yr2_A Prolyl oligopeptidase; 99.4 6.6E-11 2.3E-15 133.0 27.7 235 10-286 167-444 (741)
198 2mad_H Methylamine dehydrogena 99.4 1.6E-09 5.4E-14 110.8 34.0 186 12-233 27-245 (373)
199 2z2n_A Virginiamycin B lyase; 99.4 9.1E-10 3.1E-14 108.5 30.8 232 10-284 61-296 (299)
200 3hrp_A Uncharacterized protein 99.4 5.7E-10 1.9E-14 115.8 29.8 232 10-281 135-408 (409)
201 2mad_H Methylamine dehydrogena 99.3 1.7E-09 5.9E-14 110.5 32.6 241 11-289 71-356 (373)
202 1pjx_A Dfpase, DIISOPROPYLFLUO 99.3 6.8E-10 2.3E-14 110.5 28.6 191 86-285 29-258 (314)
203 1yr2_A Prolyl oligopeptidase; 99.3 1.3E-10 4.3E-15 130.7 25.2 184 86-282 174-392 (741)
204 3iuj_A Prolyl endopeptidase; h 99.3 1.7E-10 5.8E-15 128.5 25.8 233 11-286 134-408 (693)
205 2qc5_A Streptogramin B lactona 99.3 2.4E-09 8.2E-14 105.5 31.1 231 10-281 24-258 (300)
206 3sjl_D Methylamine dehydrogena 99.3 4.7E-10 1.6E-14 113.6 24.9 239 11-291 83-371 (386)
207 1rwi_B Serine/threonine-protei 99.3 1.8E-10 6.1E-15 112.1 20.9 194 10-233 71-266 (270)
208 2ghs_A AGR_C_1268P; regucalcin 99.3 3.6E-09 1.2E-13 106.2 30.8 192 69-281 52-258 (326)
209 1xip_A Nucleoporin NUP159; bet 99.3 4.2E-11 1.5E-15 121.7 15.9 183 5-218 39-232 (388)
210 3g4e_A Regucalcin; six bladed 99.3 3.2E-09 1.1E-13 105.1 28.3 220 10-272 17-261 (297)
211 2qc5_A Streptogramin B lactona 99.2 6.5E-09 2.2E-13 102.3 29.5 229 10-281 66-298 (300)
212 3sjl_D Methylamine dehydrogena 99.2 3E-09 1E-13 107.7 27.1 275 86-379 44-361 (386)
213 1yiq_A Quinohemoprotein alcoho 99.2 1.1E-09 3.9E-14 121.2 25.7 241 16-292 120-514 (689)
214 3c75_H MADH, methylamine dehyd 99.2 1.5E-09 5.2E-14 111.8 24.2 237 11-290 123-409 (426)
215 2ghs_A AGR_C_1268P; regucalcin 99.2 1.9E-08 6.5E-13 100.9 30.9 218 10-272 53-291 (326)
216 1kb0_A Quinohemoprotein alcoho 99.2 1.9E-09 6.6E-14 119.1 24.7 242 16-292 127-516 (677)
217 3hrp_A Uncharacterized protein 99.2 1.8E-08 6.1E-13 104.4 28.4 187 86-286 142-357 (409)
218 3c75_H MADH, methylamine dehyd 99.1 2E-09 6.9E-14 110.9 20.3 234 15-288 82-364 (426)
219 1yiq_A Quinohemoprotein alcoho 99.1 9.6E-09 3.3E-13 113.7 26.9 199 17-235 70-342 (689)
220 2ece_A 462AA long hypothetical 99.1 8.6E-09 2.9E-13 105.0 24.2 232 12-271 88-399 (462)
221 2hz6_A Endoplasmic reticulum t 99.1 3.3E-11 1.1E-15 123.4 6.1 223 16-285 8-238 (369)
222 2qe8_A Uncharacterized protein 99.1 3E-09 1E-13 107.7 18.7 239 10-279 21-317 (343)
223 2iwa_A Glutamine cyclotransfer 99.1 2.1E-08 7.1E-13 96.1 23.2 190 12-232 27-238 (266)
224 3dr2_A Exported gluconolactona 99.1 9.2E-09 3.1E-13 102.2 21.4 220 11-277 50-301 (305)
225 1fwx_A Nitrous oxide reductase 99.1 2.7E-08 9.4E-13 104.9 25.2 240 15-285 99-433 (595)
226 3q7m_A Lipoprotein YFGL, BAMB; 99.0 9.9E-08 3.4E-12 97.6 27.1 235 16-291 52-304 (376)
227 3dr2_A Exported gluconolactona 99.0 7.8E-08 2.7E-12 95.4 25.4 190 69-281 48-265 (305)
228 1kb0_A Quinohemoprotein alcoho 99.0 1.1E-07 3.7E-12 105.1 28.7 199 17-235 77-350 (677)
229 2hz6_A Endoplasmic reticulum t 99.0 1.5E-10 5.2E-15 118.5 5.4 185 86-291 9-200 (369)
230 1xip_A Nucleoporin NUP159; bet 99.0 4.4E-09 1.5E-13 106.9 15.8 165 86-271 49-232 (388)
231 3q7m_A Lipoprotein YFGL, BAMB; 99.0 1.7E-07 5.8E-12 95.9 26.1 225 16-290 102-344 (376)
232 1kv9_A Type II quinohemoprotei 99.0 6.6E-08 2.2E-12 106.7 24.4 241 17-292 117-497 (668)
233 1fwx_A Nitrous oxide reductase 98.9 3.5E-07 1.2E-11 96.5 27.0 251 20-283 18-361 (595)
234 2ece_A 462AA long hypothetical 98.9 2.6E-07 8.9E-12 94.1 24.8 191 86-283 96-352 (462)
235 1mda_H Methylamine dehydrogena 98.9 5.9E-08 2E-12 98.3 18.7 230 19-291 34-354 (368)
236 1w6s_A Methanol dehydrogenase 98.9 5.2E-07 1.8E-11 97.5 26.7 245 12-291 112-511 (599)
237 3nol_A Glutamine cyclotransfer 98.9 2.8E-07 9.5E-12 87.2 20.7 174 12-218 49-243 (262)
238 1mda_H Methylamine dehydrogena 98.8 5.7E-08 1.9E-12 98.4 16.8 249 97-381 47-346 (368)
239 2ad6_A Methanol dehydrogenase 98.8 6.5E-07 2.2E-11 96.7 26.0 240 17-291 115-502 (571)
240 3iuj_A Prolyl endopeptidase; h 98.8 1.1E-07 3.9E-12 105.6 20.4 186 86-285 140-361 (693)
241 2qe8_A Uncharacterized protein 98.8 2.9E-07 1E-11 92.9 21.0 189 9-218 70-309 (343)
242 3hxj_A Pyrrolo-quinoline quino 98.8 7.5E-08 2.6E-12 96.3 14.9 222 12-288 26-248 (330)
243 1npe_A Nidogen, entactin; glyc 98.8 6.1E-06 2.1E-10 79.8 27.5 202 68-291 38-246 (267)
244 3hxj_A Pyrrolo-quinoline quino 98.7 1.2E-06 4.2E-11 87.3 22.7 216 17-282 107-323 (330)
245 3mbr_X Glutamine cyclotransfer 98.7 3.6E-06 1.2E-10 78.9 23.3 174 12-218 27-222 (243)
246 1kv9_A Type II quinohemoprotei 98.7 5.3E-06 1.8E-10 91.4 28.6 198 17-235 66-337 (668)
247 1flg_A Protein (quinoprotein e 98.7 2.4E-06 8.1E-11 92.4 25.2 246 17-292 117-525 (582)
248 2fp8_A Strictosidine synthase; 98.7 6.2E-06 2.1E-10 82.2 26.1 249 11-283 24-313 (322)
249 3nok_A Glutaminyl cyclase; bet 98.7 1.8E-06 6E-11 81.7 19.8 173 12-218 61-253 (268)
250 2iwa_A Glutamine cyclotransfer 98.6 1.1E-05 3.6E-10 77.3 24.7 182 88-284 33-238 (266)
251 1npe_A Nidogen, entactin; glyc 98.6 4.2E-05 1.4E-09 73.8 29.2 195 10-235 40-242 (267)
252 2ad6_A Methanol dehydrogenase 98.6 3.8E-05 1.3E-09 82.8 29.9 197 17-235 62-339 (571)
253 3mbr_X Glutamine cyclotransfer 98.6 1.6E-05 5.5E-10 74.5 22.5 170 108-290 11-186 (243)
254 1ijq_A LDL receptor, low-densi 98.5 0.00018 6.2E-09 71.3 31.3 230 20-287 4-242 (316)
255 3nol_A Glutamine cyclotransfer 98.5 6.1E-06 2.1E-10 78.0 17.1 161 118-290 43-208 (262)
256 2p4o_A Hypothetical protein; p 98.5 5.7E-05 1.9E-09 74.6 25.1 225 10-273 36-278 (306)
257 3nok_A Glutaminyl cyclase; bet 98.4 6.7E-06 2.3E-10 77.7 17.0 170 108-291 45-218 (268)
258 1flg_A Protein (quinoprotein e 98.4 9.6E-05 3.3E-09 79.8 26.9 196 18-235 69-359 (582)
259 3v65_B Low-density lipoprotein 98.4 0.00027 9.1E-09 72.3 28.6 224 26-288 95-323 (386)
260 3p5b_L Low density lipoprotein 98.3 0.00068 2.3E-08 69.5 30.8 232 19-288 85-325 (400)
261 3v64_C Agrin; beta propeller, 98.3 0.00046 1.6E-08 69.4 29.0 200 68-287 75-279 (349)
262 2xe4_A Oligopeptidase B; hydro 98.3 7.9E-05 2.7E-09 83.4 25.4 190 10-229 178-398 (751)
263 1w6s_A Methanol dehydrogenase 98.3 0.00023 7.8E-09 76.9 27.9 203 17-235 62-346 (599)
264 3sov_A LRP-6, low-density lipo 98.3 0.0008 2.7E-08 66.6 27.8 202 68-288 37-243 (318)
265 2fp8_A Strictosidine synthase; 98.3 0.00029 9.9E-09 69.9 24.9 185 86-281 30-267 (322)
266 4a2l_A BT_4663, two-component 98.2 0.0024 8.1E-08 72.0 32.7 246 4-285 310-573 (795)
267 1k3i_A Galactose oxidase precu 98.1 0.00017 5.7E-09 79.4 22.3 243 8-285 188-499 (656)
268 2p4o_A Hypothetical protein; p 98.1 0.002 6.8E-08 63.3 26.5 183 86-282 43-241 (306)
269 3qqz_A Putative uncharacterize 98.1 0.0028 9.4E-08 60.1 25.9 192 5-228 28-250 (255)
270 4a2l_A BT_4663, two-component 98.1 0.0032 1.1E-07 70.8 31.1 241 5-285 358-616 (795)
271 3qqz_A Putative uncharacterize 98.0 0.0021 7.3E-08 60.9 24.4 196 67-281 28-251 (255)
272 3v65_B Low-density lipoprotein 98.0 0.002 6.7E-08 65.7 26.1 196 10-234 120-321 (386)
273 1ijq_A LDL receptor, low-densi 98.0 0.0049 1.7E-07 60.8 28.0 193 10-233 34-240 (316)
274 3v64_C Agrin; beta propeller, 98.0 0.0024 8E-08 64.2 25.9 194 10-233 77-277 (349)
275 3tc9_A Hypothetical hydrolase; 98.0 0.0014 4.8E-08 67.9 24.4 148 10-187 141-300 (430)
276 3m0c_C LDL receptor, low-densi 97.9 0.011 3.6E-07 65.9 31.0 192 86-287 436-636 (791)
277 3v9f_A Two-component system se 97.9 0.005 1.7E-07 69.1 29.0 245 5-285 314-570 (781)
278 3sov_A LRP-6, low-density lipo 97.9 0.0065 2.2E-07 60.0 25.7 145 86-234 91-241 (318)
279 2xe4_A Oligopeptidase B; hydro 97.8 0.00096 3.3E-08 74.5 21.0 183 86-281 186-398 (751)
280 3amr_A 3-phytase; beta-propell 97.8 0.0031 1.1E-07 62.1 22.0 190 16-230 39-262 (355)
281 4hw6_A Hypothetical protein, I 97.8 0.0048 1.6E-07 63.9 24.7 189 10-229 143-372 (433)
282 3v9f_A Two-component system se 97.8 0.024 8.1E-07 63.6 32.4 242 5-286 212-481 (781)
283 3p5b_L Low density lipoprotein 97.8 0.0075 2.6E-07 61.7 25.9 146 86-234 171-323 (400)
284 1k3i_A Galactose oxidase precu 97.8 0.0004 1.4E-08 76.4 17.0 227 11-272 248-530 (656)
285 1n7d_A LDL receptor, low-densi 97.8 0.00011 3.6E-09 81.3 11.8 194 88-290 420-621 (699)
286 3amr_A 3-phytase; beta-propell 97.7 0.018 6E-07 56.8 26.0 202 70-287 29-268 (355)
287 3tc9_A Hypothetical hydrolase; 97.7 0.0092 3.1E-07 61.7 24.8 141 87-231 150-301 (430)
288 3m0c_C LDL receptor, low-densi 97.6 0.018 6.1E-07 64.1 26.9 144 87-233 484-634 (791)
289 4hw6_A Hypothetical protein, I 97.6 0.0098 3.3E-07 61.5 23.4 141 87-231 153-304 (433)
290 2xzh_A Clathrin heavy chain 1; 97.6 0.042 1.5E-06 53.1 25.2 192 86-288 78-295 (365)
291 2p9w_A MAL S 1 allergenic prot 97.5 0.019 6.4E-07 56.1 22.4 202 10-231 17-265 (334)
292 3kya_A Putative phosphatase; s 97.5 0.028 9.6E-07 58.5 24.7 152 10-187 143-340 (496)
293 2p9w_A MAL S 1 allergenic prot 97.4 0.025 8.6E-07 55.2 22.0 153 68-231 15-215 (334)
294 2vpj_A Kelch-like protein 12; 97.4 0.017 6E-07 56.2 21.6 184 86-284 63-279 (301)
295 3s94_A LRP-6, low-density lipo 97.4 0.043 1.5E-06 59.5 25.8 188 88-287 53-247 (619)
296 1bpo_A Protein (clathrin); cla 97.4 0.11 3.8E-06 52.3 26.2 192 86-288 77-294 (494)
297 4a0p_A LRP6, LRP-6, low-densit 97.3 0.2 6.9E-06 54.2 29.9 228 19-286 8-240 (628)
298 2xbg_A YCF48-like protein; pho 97.2 0.12 4.2E-06 50.9 24.9 177 89-281 135-320 (327)
299 1n7d_A LDL receptor, low-densi 97.2 0.0011 3.8E-08 73.2 10.8 144 86-233 465-616 (699)
300 3ii7_A Kelch-like protein 7; p 97.2 0.07 2.4E-06 51.9 22.7 184 86-284 56-273 (306)
301 4a0p_A LRP6, LRP-6, low-densit 97.2 0.17 5.8E-06 54.8 27.4 185 87-283 7-197 (628)
302 2xn4_A Kelch-like protein 2; s 97.2 0.074 2.5E-06 51.6 22.7 184 86-284 62-277 (302)
303 3sre_A PON1, serum paraoxonase 97.2 0.096 3.3E-06 52.1 23.3 176 94-280 81-295 (355)
304 3s94_A LRP-6, low-density lipo 97.0 0.058 2E-06 58.4 22.2 196 9-233 43-245 (619)
305 3a9g_A Putative uncharacterize 97.0 0.21 7.3E-06 49.8 24.6 199 10-232 33-297 (354)
306 3pbp_A Nucleoporin NUP82; beta 97.0 0.092 3.1E-06 52.9 21.2 148 126-280 29-209 (452)
307 2ism_A Putative oxidoreductase 97.0 0.26 8.9E-06 49.1 25.0 198 10-232 35-298 (352)
308 2xbg_A YCF48-like protein; pho 97.0 0.085 2.9E-06 52.0 21.2 110 115-228 202-319 (327)
309 3sre_A PON1, serum paraoxonase 97.0 0.35 1.2E-05 48.0 29.2 129 96-229 139-296 (355)
310 3kya_A Putative phosphatase; s 96.9 0.034 1.2E-06 57.9 18.0 144 87-231 153-341 (496)
311 2xzh_A Clathrin heavy chain 1; 96.9 0.38 1.3E-05 46.6 28.7 239 6-287 67-336 (365)
312 3ei3_A DNA damage-binding prot 96.8 0.46 1.6E-05 55.2 28.4 141 86-231 844-999 (1158)
313 1zgk_A Kelch-like ECH-associat 96.7 0.14 4.6E-06 50.0 20.3 183 86-284 71-288 (308)
314 4asc_A Kelch repeat and BTB do 96.7 0.25 8.4E-06 48.2 22.1 144 86-233 46-223 (315)
315 2vpj_A Kelch-like protein 12; 96.6 0.21 7.3E-06 48.2 20.6 145 86-233 113-280 (301)
316 1bpo_A Protein (clathrin); cla 96.5 0.89 3.1E-05 45.9 30.8 239 5-286 65-334 (494)
317 2be1_A Serine/threonine-protei 96.4 0.02 6.9E-07 56.5 11.2 117 18-158 11-140 (339)
318 2woz_A Kelch repeat and BTB do 96.4 0.7 2.4E-05 45.0 22.6 143 86-233 57-233 (318)
319 3ii7_A Kelch-like protein 7; p 96.3 0.23 7.7E-06 48.2 18.9 143 86-233 102-274 (306)
320 2be1_A Serine/threonine-protei 96.3 0.035 1.2E-06 54.8 12.5 196 86-288 10-236 (339)
321 2xn4_A Kelch-like protein 2; s 96.2 0.28 9.5E-06 47.4 18.5 143 86-233 109-278 (302)
322 2g8s_A Glucose/sorbosone dehyd 96.1 1.1 3.9E-05 44.4 22.8 26 10-35 22-47 (353)
323 1xi4_A Clathrin heavy chain; a 96.0 0.27 9.3E-06 57.0 19.2 194 86-291 77-297 (1630)
324 2uvk_A YJHT; unknown function, 96.0 0.99 3.4E-05 44.7 22.1 190 86-287 66-346 (357)
325 3ei3_A DNA damage-binding prot 95.9 3.7 0.00013 47.7 28.9 177 96-283 807-999 (1158)
326 3pbp_A Nucleoporin NUP82; beta 95.7 0.083 2.9E-06 53.2 12.2 132 5-145 67-209 (452)
327 3sbq_A Nitrous-oxide reductase 95.6 2.6 8.9E-05 43.9 23.1 110 160-272 323-454 (638)
328 2woz_A Kelch repeat and BTB do 95.5 0.76 2.6E-05 44.7 18.5 101 86-191 110-234 (318)
329 4asc_A Kelch repeat and BTB do 95.5 0.74 2.5E-05 44.7 18.3 103 86-191 99-224 (315)
330 1zgk_A Kelch-like ECH-associat 95.3 0.66 2.2E-05 45.0 17.1 184 86-284 25-241 (308)
331 1tl2_A L10, protein (tachylect 95.2 0.93 3.2E-05 41.3 16.1 136 86-227 4-159 (236)
332 2g8s_A Glucose/sorbosone dehyd 95.0 3 0.0001 41.2 24.1 129 86-216 29-214 (353)
333 1xi4_A Clathrin heavy chain; a 94.9 0.97 3.3E-05 52.5 18.6 193 10-235 70-293 (1630)
334 3a9g_A Putative uncharacterize 94.8 3.5 0.00012 40.8 23.5 125 89-216 42-214 (354)
335 3sbq_A Nitrous-oxide reductase 94.7 4.9 0.00017 41.9 24.4 257 20-284 73-409 (638)
336 3das_A Putative oxidoreductase 94.5 4.1 0.00014 40.1 26.8 30 10-39 36-65 (347)
337 3ott_A Two-component system se 94.4 7.4 0.00025 42.9 29.3 178 86-284 73-261 (758)
338 2ism_A Putative oxidoreductase 94.4 1.5 5.3E-05 43.4 17.4 98 118-218 31-153 (352)
339 1cru_A Protein (soluble quinop 94.3 5.6 0.00019 40.9 26.8 30 10-39 31-60 (454)
340 1tl2_A L10, protein (tachylect 93.8 0.79 2.7E-05 41.7 12.2 92 86-181 99-203 (236)
341 2uvk_A YJHT; unknown function, 93.4 1.7 6E-05 42.8 15.6 137 96-235 168-346 (357)
342 2zwa_A Leucine carboxyl methyl 93.1 6.1 0.00021 43.1 20.6 148 86-233 452-637 (695)
343 2zwa_A Leucine carboxyl methyl 92.9 3.5 0.00012 45.1 18.3 147 86-233 398-579 (695)
344 3s25_A Hypothetical 7-bladed b 92.8 7.2 0.00025 37.5 22.9 133 86-233 115-257 (302)
345 3s25_A Hypothetical 7-bladed b 92.4 8 0.00027 37.2 22.7 123 96-233 88-218 (302)
346 3ott_A Two-component system se 90.0 26 0.00088 38.5 26.0 143 86-233 429-588 (758)
347 1cru_A Protein (soluble quinop 87.7 26 0.0009 35.7 22.2 101 118-218 27-162 (454)
348 3das_A Putative oxidoreductase 85.5 29 0.00098 34.0 26.8 128 86-216 43-218 (347)
349 3no0_A DNA gyrase subunit A; D 80.7 38 0.0013 31.8 17.5 186 86-283 35-246 (276)
350 3qhy_B Beta-lactamase inhibito 76.6 51 0.0017 31.0 15.5 173 89-285 37-209 (282)
351 4gq2_M Nucleoporin NUP120; bet 75.9 80 0.0027 35.7 17.8 38 119-156 237-274 (950)
352 3q6k_A 43.2 kDa salivary prote 74.8 69 0.0024 31.7 20.1 138 140-283 124-306 (381)
353 3qhy_B Beta-lactamase inhibito 73.3 61 0.0021 30.4 15.6 174 87-284 74-247 (282)
354 2wg3_C Hedgehog-interacting pr 73.1 26 0.0009 35.8 11.9 101 118-218 14-157 (463)
355 4gq2_M Nucleoporin NUP120; bet 64.7 9.3 0.00032 43.4 6.9 37 8-44 238-274 (950)
356 4fhn_B Nucleoporin NUP120; pro 64.4 1E+02 0.0035 35.6 15.8 38 119-156 239-276 (1139)
357 3q6k_A 43.2 kDa salivary prote 64.4 1.1E+02 0.0039 30.1 22.6 133 97-231 124-306 (381)
358 3uc1_A DNA gyrase subunit A; D 56.3 1.4E+02 0.0049 28.6 21.1 189 86-283 53-279 (327)
359 3kci_A Probable E3 ubiquitin-p 55.8 1.6E+02 0.0054 28.9 26.6 193 86-287 62-297 (389)
360 4fhn_B Nucleoporin NUP120; pro 54.5 12 0.00041 43.5 5.6 36 9-44 241-276 (1139)
361 4a9v_A PHOX; hydrolase, beta-p 54.1 49 0.0017 34.7 9.4 58 161-218 477-549 (592)
362 3zwu_A Alkaline phosphatase PH 53.6 39 0.0013 35.8 8.8 57 120-176 478-547 (592)
363 4a9v_A PHOX; hydrolase, beta-p 53.2 56 0.0019 34.3 9.7 61 118-178 476-549 (592)
364 3uc1_A DNA gyrase subunit A; D 51.6 1.7E+02 0.0059 28.1 17.6 142 86-231 109-279 (327)
365 2wg3_C Hedgehog-interacting pr 46.0 2.5E+02 0.0087 28.4 25.3 26 10-35 18-44 (463)
366 1zi0_A DNA gyrase subunit A; b 45.9 2E+02 0.0069 27.2 24.1 189 86-283 53-277 (307)
367 3zwu_A Alkaline phosphatase PH 42.9 71 0.0024 33.7 8.7 57 161-217 477-548 (592)
368 3f7f_A Nucleoporin NUP120; nuc 42.8 25 0.00084 38.0 5.2 31 14-44 228-258 (729)
369 1k8k_G P16, ARP2/3 complex 16 40.5 37 0.0013 28.4 4.8 38 484-521 81-118 (151)
370 3dwl_G Actin-related protein 2 40.3 35 0.0012 28.6 4.6 54 484-537 82-136 (152)
371 3b7f_A Glycosyl hydrolase, BNR 38.3 2.9E+02 0.0099 26.9 15.9 97 86-184 22-143 (394)
372 3s6n_2 SurviVal of motor neuro 35.5 69 0.0024 30.1 6.5 46 496-542 181-226 (280)
373 1suu_A DNA gyrase subunit A; t 32.2 3.3E+02 0.011 25.7 22.9 190 86-284 8-232 (312)
374 3f7f_A Nucleoporin NUP120; nuc 30.9 67 0.0023 34.7 6.2 36 120-157 224-259 (729)
375 4hvt_A Ritya.17583.B, post-pro 29.3 5.6E+02 0.019 27.5 19.6 188 87-285 143-383 (711)
376 1wp5_A Topoisomerase IV; broke 27.2 4.1E+02 0.014 25.3 22.9 143 86-231 50-225 (323)
377 1b2p_A Protein (lectin); manno 24.9 2.5E+02 0.0087 22.1 12.1 43 90-133 65-107 (119)
378 3mez_B Mannose-specific lectin 24.6 2.5E+02 0.0085 21.8 11.0 81 86-176 24-104 (113)
379 2l9b_A MRNA 3'-END-processing 23.6 40 0.0014 26.4 2.1 34 490-523 37-71 (109)
380 4hvt_A Ritya.17583.B, post-pro 23.5 7.1E+02 0.024 26.7 24.7 193 12-232 136-382 (711)
381 1suu_A DNA gyrase subunit A; t 22.1 5E+02 0.017 24.4 25.2 143 86-231 58-231 (312)
382 3a0c_A Mannose/sialic acid-bin 21.7 2.8E+02 0.0096 21.4 10.8 41 92-133 57-97 (110)
383 1q47_A Semaphorin 3A; beta pro 21.1 1.9E+02 0.0065 29.7 7.4 58 86-143 421-487 (495)
No 1
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=5.5e-41 Score=352.01 Aligned_cols=281 Identities=15% Similarity=0.258 Sum_probs=250.5
Q ss_pred CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (612)
Q Consensus 2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (612)
|.++|+++ +|+|++++|++|+.||+|+|||+.+++....+.+|...+.++.|+++
T Consensus 107 h~~~V~~~--~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~----------------------- 161 (410)
T 1vyh_C 107 HRSPVTRV--IFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHS----------------------- 161 (410)
T ss_dssp CSSCEEEE--EECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTT-----------------------
T ss_pred cCCcEEEE--EEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCC-----------------------
Confidence 45788655 99999999999999999999999999999999988887777777666
Q ss_pred cccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCC
Q 007234 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG 161 (612)
Q Consensus 82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~ 161 (612)
+.++++|+.||.|++||+.+++++..+ .+|...|.+++|+|++++|++|+.|++|++||+.+++++.++.+|...
T Consensus 162 ----~~~l~sgs~D~~i~iwd~~~~~~~~~~-~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~ 236 (410)
T 1vyh_C 162 ----GKLLASCSADMTIKLWDFQGFECIRTM-HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREW 236 (410)
T ss_dssp ----SSEEEEEETTSCCCEEETTSSCEEECC-CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred ----CCEEEEEeCCCeEEEEeCCCCceeEEE-cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCcc
Confidence 889999999999999999999988666 689999999999999999999999999999999999999999999999
Q ss_pred eeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeC--------------------CcEEEEEEc
Q 007234 162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDN--------------------GKYVLSSAV 219 (612)
Q Consensus 162 v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~--------------------~~~l~s~s~ 219 (612)
|.++.++|+|+++++++ +.|++||+.++++...+.+|...|.+++|+|+ |.++++++
T Consensus 237 v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs- 315 (410)
T 1vyh_C 237 VRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS- 315 (410)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEE-
T ss_pred EEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEe-
Confidence 99999999999999998 89999999999999999999999999999996 66888887
Q ss_pred CCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeec
Q 007234 220 GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSS 299 (612)
Q Consensus 220 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 299 (612)
.|+.|++||+.++.. +..+..+...+..+.|+ |+|.+|++++.||.|++||+.+++.+.
T Consensus 316 ~D~~i~iwd~~~~~~-----~~~~~~h~~~v~~v~~~-----~~g~~l~s~s~D~~i~vwd~~~~~~~~----------- 374 (410)
T 1vyh_C 316 RDKTIKMWDVSTGMC-----LMTLVGHDNWVRGVLFH-----SGGKFILSCADDKTLRVWDYKNKRCMK----------- 374 (410)
T ss_dssp TTSEEEEEETTTTEE-----EEEEECCSSCEEEEEEC-----SSSSCEEEEETTTEEEEECCTTSCCCE-----------
T ss_pred CCCeEEEEECCCCce-----EEEEECCCCcEEEEEEc-----CCCCEEEEEeCCCeEEEEECCCCceEE-----------
Confidence 799999999998763 34555566667778887 999999999999999999976543321
Q ss_pred ccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceee
Q 007234 300 EDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (612)
Q Consensus 300 ~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~ 379 (612)
.+.+|...|++++|+|++.+| +|||.|+++++|+.
T Consensus 375 --------------------------------------------~~~~h~~~v~~l~~~~~~~~l-~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 375 --------------------------------------------TLNAHEHFVTSLDFHKTAPYV-VTGSVDQTVKVWEC 409 (410)
T ss_dssp --------------------------------------------EEECCSSCEEEEEECSSSSCE-EEEETTSEEEEEC-
T ss_pred --------------------------------------------EEcCCCCcEEEEEEcCCCCEE-EEEeCCCcEEEEeC
Confidence 445688899999999999999 99999999999975
No 2
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=3.9e-40 Score=336.60 Aligned_cols=282 Identities=15% Similarity=0.188 Sum_probs=243.4
Q ss_pred CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (612)
Q Consensus 2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (612)
|.++|.++ +|+|||++|++|+.||+|+|||..+++.+..+..|...+.++.|+++
T Consensus 54 H~~~v~~~--~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~----------------------- 108 (340)
T 1got_B 54 HLAKIYAM--HWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS----------------------- 108 (340)
T ss_dssp CSSCEEEE--EECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTT-----------------------
T ss_pred CCCceEEE--EECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCC-----------------------
Confidence 46788655 99999999999999999999999999999999888777766666665
Q ss_pred cccCCcEEEEEECCCcEEEEEcCCCe---EEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecC
Q 007234 82 RKLGSSLLVLGTGGGDVLALAVSAGQ---LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS 158 (612)
Q Consensus 82 ~~~~~~~l~~gs~~g~I~vwd~~~~~---~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~ 158 (612)
+.++++|+.||.|++|++.++. .......+|.+.|.++.|++++. +++++.|++|++||+.+++.+..+.+|
T Consensus 109 ----~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h 183 (340)
T 1got_B 109 ----GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGH 183 (340)
T ss_dssp ----SSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred ----CCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCC
Confidence 8899999999999999998763 22233468999999999998875 899999999999999999999999999
Q ss_pred CCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCcccc
Q 007234 159 TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS 236 (612)
Q Consensus 159 ~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~ 236 (612)
...|.+++|+|+++++++|+ |.|++||+++++++..+.+|...|.+++|+|++++|++++ .|+.|++||++.++..
T Consensus 184 ~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s-~d~~v~iwd~~~~~~~- 261 (340)
T 1got_B 184 TGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS-DDATCRLFDLRADQEL- 261 (340)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTTEEE-
T ss_pred CCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEc-CCCcEEEEECCCCcEE-
Confidence 99999999999999999988 8999999999999999999999999999999999999998 7999999999887643
Q ss_pred ceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhc
Q 007234 237 ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFA 316 (612)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~ 316 (612)
..+........+..+.|+ |+|.+|++|+.||.|++||..+++.+
T Consensus 262 --~~~~~~~~~~~v~~~~~s-----~~g~~l~~g~~d~~i~vwd~~~~~~~----------------------------- 305 (340)
T 1got_B 262 --MTYSHDNIICGITSVSFS-----KSGRLLLAGYDDFNCNVWDALKADRA----------------------------- 305 (340)
T ss_dssp --EEECCTTCCSCEEEEEEC-----TTSSEEEEEETTSEEEEEETTTCCEE-----------------------------
T ss_pred --EEEccCCcccceEEEEEC-----CCCCEEEEECCCCeEEEEEcccCcEe-----------------------------
Confidence 122222222356778887 99999999999999999997654331
Q ss_pred ccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeeccee
Q 007234 317 AKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY 378 (612)
Q Consensus 317 ~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~ 378 (612)
..+.+|...|.+++|+|||.+| +|||.|+++++|+
T Consensus 306 --------------------------~~~~~h~~~v~~~~~s~dg~~l-~s~s~D~~i~iWd 340 (340)
T 1got_B 306 --------------------------GVLAGHDNRVSCLGVTDDGMAV-ATGSWDSFLKIWN 340 (340)
T ss_dssp --------------------------EEEECCSSCEEEEEECTTSSCE-EEEETTSCEEEEC
T ss_pred --------------------------eEeecCCCcEEEEEEcCCCCEE-EEEcCCccEEecC
Confidence 1455788899999999999999 9999999999995
No 3
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=9.1e-40 Score=360.68 Aligned_cols=347 Identities=17% Similarity=0.187 Sum_probs=264.6
Q ss_pred CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCc--EEEEeeccCCccccccccccccc------------------
Q 007234 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ--VQTEFADIASTETTSLYGNRLER------------------ 61 (612)
Q Consensus 2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~s~~~~~------------------ 61 (612)
|..+|+++ +|||||++||+|+.||+|+|||+.+++ ....+.+|.+.+.++.|+++-..
T Consensus 58 h~~~v~~~--~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd 135 (611)
T 1nr0_A 58 HSHQTTVA--KTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD 135 (611)
T ss_dssp CSSCEEEE--EECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT
T ss_pred CCCceEEE--EECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEee
Confidence 45678555 999999999999999999999997543 55678899999999999876110
Q ss_pred ---------cccccceeEEEeeecccccccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEE
Q 007234 62 ---------EHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCI 132 (612)
Q Consensus 62 ---------~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l 132 (612)
+| ...+.++.|.|.. ...+++|+.|+.|++||..++++...+ .+|...|++++|+|+|++|
T Consensus 136 ~~~~~~~l~gh-~~~v~~v~f~p~~--------~~~l~s~s~D~~v~lwd~~~~~~~~~l-~~H~~~V~~v~fspdg~~l 205 (611)
T 1nr0_A 136 TGTSNGNLTGQ-ARAMNSVDFKPSR--------PFRIISGSDDNTVAIFEGPPFKFKSTF-GEHTKFVHSVRYNPDGSLF 205 (611)
T ss_dssp TCCBCBCCCCC-SSCEEEEEECSSS--------SCEEEEEETTSCEEEEETTTBEEEEEE-CCCSSCEEEEEECTTSSEE
T ss_pred CCCCcceecCC-CCCceEEEECCCC--------CeEEEEEeCCCeEEEEECCCCeEeeee-ccccCceEEEEECCCCCEE
Confidence 00 1123444444432 346999999999999999998887666 6899999999999999999
Q ss_pred EEEecCCcEEEEECCCCceeEEEe-------cCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEE----------
Q 007234 133 YSAGADGMVCEIDPLTGSLLGKFR-------ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQ---------- 193 (612)
Q Consensus 133 ~s~s~dg~v~iwd~~~~~~~~~~~-------~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~---------- 193 (612)
++|+.|++|++||+.+++.+..+. +|...|.+++|+|+|++|++++ ++|++||+.+++.+.
T Consensus 206 as~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~ 285 (611)
T 1nr0_A 206 ASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIED 285 (611)
T ss_dssp EEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGG
T ss_pred EEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccc
Confidence 999999999999999999988884 6889999999999999999998 899999999876543
Q ss_pred ---------------------------------EEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccce--
Q 007234 194 ---------------------------------KFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS-- 238 (612)
Q Consensus 194 ---------------------------------~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~-- 238 (612)
.+.+|...|.+++|+|+|++|++++ .|+.|++||+.++......
T Consensus 286 ~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s-~D~~v~~Wd~~~~~~~~~~~~ 364 (611)
T 1nr0_A 286 QQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSAD-AEGHINSWDISTGISNRVFPD 364 (611)
T ss_dssp CEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTCCEEECSSC
T ss_pred eeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEe-CCCcEEEEECCCCceeeeccc
Confidence 3457999999999999999999998 7999999999865421000
Q ss_pred ----ee-----------E--------------------------eec---------C-----------------------
Q 007234 239 ----CV-----------L--------------------------AME---------H----------------------- 245 (612)
Q Consensus 239 ----~~-----------~--------------------------~~~---------~----------------------- 245 (612)
.+ . .+. .
T Consensus 365 ~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~ 444 (611)
T 1nr0_A 365 VHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTE 444 (611)
T ss_dssp SCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEE
T ss_pred CCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceee
Confidence 00 0 000 0
Q ss_pred --CceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCccee--cccCCceeEeecccccCCCCcccchhhhcccccc
Q 007234 246 --PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL--RNTKATKILSSSEDVNSKSQKSATAAIFAAKLQD 321 (612)
Q Consensus 246 --~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~ 321 (612)
+...+.+++|+ |||++|++++.||+|++||+.++... .. ......+.+. .|+|+++ .+++++.|+
T Consensus 445 ~~~~~~v~~va~s-----pdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v-~fspdg~----~las~s~d~ 513 (611)
T 1nr0_A 445 VPISYNSSCVALS-----NDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSV-AFSNNGA----FLVATDQSR 513 (611)
T ss_dssp EECSSCEEEEEEC-----TTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEE-EECTTSS----EEEEEETTS
T ss_pred eecCCCceEEEEe-----CCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEE-EECCCCC----EEEEEcCCC
Confidence 00112345565 99999999999999999998775431 11 1111222222 2899998 899999988
Q ss_pred eecCCCceEEEEeCCccCceEEE--eeccCCCeEEEEecCCCceEeccccceeeecceeee
Q 007234 322 IVKPASVHTFVAYGLLLKPSFQK--ILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (612)
Q Consensus 322 ~~~~~~~~~~~~~g~~~~~~~~~--~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~~ 380 (612)
.+++|+.. ........ ..+|...|.+++|||||++| +|||.|+++++|++.
T Consensus 514 ~v~~w~~~-------~~~~~~~~~~~~~H~~~V~~v~fspdg~~l-asgs~D~~v~lW~~~ 566 (611)
T 1nr0_A 514 KVIPYSVA-------NNFELAHTNSWTFHTAKVACVSWSPDNVRL-ATGSLDNSVIVWNMN 566 (611)
T ss_dssp CEEEEEGG-------GTTEESCCCCCCCCSSCEEEEEECTTSSEE-EEEETTSCEEEEETT
T ss_pred CEEEEEcC-------CCCceeeeeeeeecccceeEEEECCCCCEE-EEEECCCcEEEEECC
Confidence 77766521 00111111 23499999999999999999 999999999999974
No 4
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.4e-39 Score=329.46 Aligned_cols=281 Identities=14% Similarity=0.169 Sum_probs=243.6
Q ss_pred CCcccceeEEEEcCC----CCEEEEEeCCCcEEEEECCCCcE--EEEeeccCCccccccccccccccccccceeEEEeee
Q 007234 2 GSSNIRDILTSFSPA----LDYFAICSGDARIKIWDTLKGQV--QTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLS 75 (612)
Q Consensus 2 ~s~~V~~l~~~fspd----g~~las~s~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~ 75 (612)
|..+|+++ +|+|+ +++|++|+.|++|+|||+.+++. ...+.+|...+.++.|+++
T Consensus 31 H~~~V~~v--~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~----------------- 91 (321)
T 3ow8_A 31 HDDAIWSV--AWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHT----------------- 91 (321)
T ss_dssp SSSCEEEE--EEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSS-----------------
T ss_pred CCCcEEEE--EEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCC-----------------
Confidence 56788655 99985 67999999999999999987764 4456777776666655555
Q ss_pred cccccccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEE
Q 007234 76 VDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKF 155 (612)
Q Consensus 76 ~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~ 155 (612)
+.++++|+.||.|++||+.+++.+..+ ..|...+.+++|+|++++|++++.||.|++||+.+++....+
T Consensus 92 ----------~~~l~s~s~D~~i~lWd~~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~ 160 (321)
T 3ow8_A 92 ----------LPIAASSSLDAHIRLWDLENGKQIKSI-DAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSL 160 (321)
T ss_dssp ----------SSEEEEEETTSEEEEEETTTTEEEEEE-ECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEE
T ss_pred ----------CCEEEEEeCCCcEEEEECCCCCEEEEE-eCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEe
Confidence 788999999999999999999998776 568889999999999999999999999999999999999999
Q ss_pred ecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCc
Q 007234 156 RASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (612)
Q Consensus 156 ~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~ 233 (612)
..+...+.+++|+|+|++|++++ |.|++||+++++.+..+.+|..+|.+++|+|++++|++++ .|+.|++||+.+++
T Consensus 161 ~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s-~dg~i~iwd~~~~~ 239 (321)
T 3ow8_A 161 DTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTAS-DDGYIKIYDVQHAN 239 (321)
T ss_dssp ECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEEC-TTSCEEEEETTTCC
T ss_pred cCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEc-CCCeEEEEECCCcc
Confidence 99989999999999999999998 8999999999999999999999999999999999999987 79999999998876
Q ss_pred cccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchh
Q 007234 234 KQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAA 313 (612)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 313 (612)
.. ..+..+...+..+.|+ |++.+|++++.||.|++||+.+++.+.
T Consensus 240 ~~-----~~~~~h~~~v~~~~~s-----p~~~~l~s~s~D~~v~iwd~~~~~~~~------------------------- 284 (321)
T 3ow8_A 240 LA-----GTLSGHASWVLNVAFC-----PDDTHFVSSSSDKSVKVWDVGTRTCVH------------------------- 284 (321)
T ss_dssp EE-----EEECCCSSCEEEEEEC-----TTSSEEEEEETTSCEEEEETTTTEEEE-------------------------
T ss_pred ee-----EEEcCCCCceEEEEEC-----CCCCEEEEEeCCCcEEEEeCCCCEEEE-------------------------
Confidence 33 4455566666778887 999999999999999999987665432
Q ss_pred hhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceee
Q 007234 314 IFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (612)
Q Consensus 314 i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~ 379 (612)
++..|...|.+++|+|||.+| ++++.|+++++|+.
T Consensus 285 ------------------------------~~~~h~~~v~~v~~s~~g~~l-~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 285 ------------------------------TFFDHQDQVWGVKYNGNGSKI-VSVGDDQEIHIYDC 319 (321)
T ss_dssp ------------------------------EECCCSSCEEEEEECTTSSEE-EEEETTCCEEEEEC
T ss_pred ------------------------------EEcCCCCcEEEEEECCCCCEE-EEEeCCCeEEEEeC
Confidence 344577789999999999999 99999999999985
No 5
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=4.2e-39 Score=330.75 Aligned_cols=282 Identities=15% Similarity=0.188 Sum_probs=242.4
Q ss_pred CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (612)
Q Consensus 2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (612)
|.++|. |++|+||+++||+|+.||+|+|||..+++....+..+...+.++.|+++
T Consensus 63 H~~~V~--~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~----------------------- 117 (354)
T 2pbi_B 63 HGNKVL--CMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPS----------------------- 117 (354)
T ss_dssp CSSCEE--EEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTT-----------------------
T ss_pred CCCeEE--EEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCC-----------------------
Confidence 567885 4599999999999999999999999999999888887777777777666
Q ss_pred cccCCcEEEEEECCCcEEEEEcCCCe------EEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEE
Q 007234 82 RKLGSSLLVLGTGGGDVLALAVSAGQ------LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKF 155 (612)
Q Consensus 82 ~~~~~~~l~~gs~~g~I~vwd~~~~~------~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~ 155 (612)
+..+++|+.|+.+++|++.... ....+ .+|...|.+++|+|++..|++++.|++|++||+.+++++..+
T Consensus 118 ----g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~ 192 (354)
T 2pbi_B 118 ----GCAIACGGLDNKCSVYPLTFDKNENMAAKKKSV-AMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSF 192 (354)
T ss_dssp ----SSEEEEESTTSEEEEEECCCCTTCCSGGGCEEE-EECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred ----CCEEEEeeCCCCEEEEEEeccccccccccceee-eccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEE
Confidence 8899999999999999986541 22223 579999999999999999999999999999999999999999
Q ss_pred ecCCCCeeEEEECC--CCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCC
Q 007234 156 RASTKGISCMAVSS--DGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (612)
Q Consensus 156 ~~~~~~v~~l~~sp--dg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~ 231 (612)
.+|...|.+++|+| +|+++++|+ |.|++||+++++++..+.+|...|.+++|+|++.+|++++ .|++|++||++.
T Consensus 193 ~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s-~D~~v~lwd~~~ 271 (354)
T 2pbi_B 193 HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGS-DDATCRLYDLRA 271 (354)
T ss_dssp ECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTT
T ss_pred cCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEe-CCCeEEEEECCC
Confidence 99999999999987 578999988 9999999999999999999999999999999999999998 799999999988
Q ss_pred CccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccc
Q 007234 232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSAT 311 (612)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 311 (612)
.... ..+........+..+.|+ |+|.+|++++.||.|++||+.+++.+.
T Consensus 272 ~~~~---~~~~~~~~~~~~~~~~~s-----~~g~~l~~g~~d~~i~vwd~~~~~~~~----------------------- 320 (354)
T 2pbi_B 272 DREV---AIYSKESIIFGASSVDFS-----LSGRLLFAGYNDYTINVWDVLKGSRVS----------------------- 320 (354)
T ss_dssp TEEE---EEECCTTCCSCEEEEEEC-----TTSSEEEEEETTSCEEEEETTTCSEEE-----------------------
T ss_pred CcEE---EEEcCCCcccceeEEEEe-----CCCCEEEEEECCCcEEEEECCCCceEE-----------------------
Confidence 7533 222222223345677787 999999999999999999986654321
Q ss_pred hhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeeccee
Q 007234 312 AAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY 378 (612)
Q Consensus 312 ~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~ 378 (612)
.+.+|...|.+++|||||++| ++||.|+++++|+
T Consensus 321 --------------------------------~l~~h~~~v~~l~~spdg~~l-~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 321 --------------------------------ILFGHENRVSTLRVSPDGTAF-CSGSWDHTLRVWA 354 (354)
T ss_dssp --------------------------------EECCCSSCEEEEEECTTSSCE-EEEETTSEEEEEC
T ss_pred --------------------------------EEECCCCcEEEEEECCCCCEE-EEEcCCCCEEecC
Confidence 345688899999999999999 9999999999995
No 6
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.5e-38 Score=350.96 Aligned_cols=326 Identities=15% Similarity=0.169 Sum_probs=260.4
Q ss_pred CCcccceeEEEEcCCCC-EEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccc
Q 007234 2 GSSNIRDILTSFSPALD-YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (612)
Q Consensus 2 ~s~~V~~l~~~fspdg~-~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~ 80 (612)
+..+|+++ +|+|++. .|++|+.|++|++||..++++...+.+|...+.++.|+++
T Consensus 146 h~~~v~~v--~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspd---------------------- 201 (611)
T 1nr0_A 146 QARAMNSV--DFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPD---------------------- 201 (611)
T ss_dssp CSSCEEEE--EECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTT----------------------
T ss_pred CCCCceEE--EECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCC----------------------
Confidence 35677555 9999997 5999999999999999999999999999888888888777
Q ss_pred ccccCCcEEEEEECCCcEEEEEcCCCeEEEEecc------CCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEE
Q 007234 81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSD------CHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK 154 (612)
Q Consensus 81 ~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~------~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~ 154 (612)
+.++++|+.||.|++||+.+++....+.. +|.+.|.+++|+|+|++|++++.|++|++||+.+++++.+
T Consensus 202 -----g~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~ 276 (611)
T 1nr0_A 202 -----GSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKT 276 (611)
T ss_dssp -----SSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred -----CCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeee
Confidence 88999999999999999999998876643 7999999999999999999999999999999998766543
Q ss_pred -------------------------------------------EecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCC
Q 007234 155 -------------------------------------------FRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDH 189 (612)
Q Consensus 155 -------------------------------------------~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~ 189 (612)
+.+|...|++++|+|+|++|++++ ++|++||+.++
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~ 356 (611)
T 1nr0_A 277 IPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTG 356 (611)
T ss_dssp EECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred ecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Confidence 346778999999999999999998 89999999876
Q ss_pred eeEEEE-e------------------------------------------------------------------------
Q 007234 190 KKMQKF-S------------------------------------------------------------------------ 196 (612)
Q Consensus 190 ~~~~~~-~------------------------------------------------------------------------ 196 (612)
+....+ .
T Consensus 357 ~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~ 436 (611)
T 1nr0_A 357 ISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAI 436 (611)
T ss_dssp CEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEE
T ss_pred ceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEE
Confidence 543221 0
Q ss_pred ---------cCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEE
Q 007234 197 ---------GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYV 267 (612)
Q Consensus 197 ---------~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 267 (612)
.|...+.+++|+|+|+++++++ .|+.|++||+.++... ......| ...+..+.|+ |+|++|
T Consensus 437 ~~~~~~~~~~~~~~v~~va~spdg~~lasgs-~D~~v~lwd~~~~~~~---~~~~~~h-~~~v~~v~fs-----pdg~~l 506 (611)
T 1nr0_A 437 YSHGKLTEVPISYNSSCVALSNDKQFVAVGG-QDSKVHVYKLSGASVS---EVKTIVH-PAEITSVAFS-----NNGAFL 506 (611)
T ss_dssp EETTEEEEEECSSCEEEEEECTTSCEEEEEE-TTSEEEEEEEETTEEE---EEEEEEC-SSCEEEEEEC-----TTSSEE
T ss_pred EeCCceeeeecCCCceEEEEeCCCCEEEEeC-CCCeEEEEEccCCcee---eeeccCC-CCceEEEEEC-----CCCCEE
Confidence 1234577899999999999988 7999999999876432 2223334 4456778887 999999
Q ss_pred EEEecCCcEEEEECCC-cceecc--cCCceeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEE
Q 007234 268 LAISETGVCYIWYGQN-IEELRN--TKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQK 344 (612)
Q Consensus 268 ~t~s~dg~i~iwd~~~-~~~~~~--~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~ 344 (612)
++++.|++|++|++.+ ++.+.. ...+...+.+.. |+|+++ .+++|+.|+.+++|+.. .+. ......
T Consensus 507 as~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~-fspdg~----~lasgs~D~~v~lW~~~----~~~--~~~~~~ 575 (611)
T 1nr0_A 507 VATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVS-WSPDNV----RLATGSLDNSVIVWNMN----KPS--DHPIII 575 (611)
T ss_dssp EEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEE-ECTTSS----EEEEEETTSCEEEEETT----CTT--SCCEEE
T ss_pred EEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEE-ECCCCC----EEEEEECCCcEEEEECC----Ccc--cccchh
Confidence 9999999999999987 554432 111223333333 899998 89999998887776621 111 111234
Q ss_pred eecc-CCCeEEEEecCCCceEeccccceeeecceee
Q 007234 345 ILVN-SGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (612)
Q Consensus 345 ~~~h-~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~ 379 (612)
+.+| ...|.+++|+|||+ | +|++.|+++++|++
T Consensus 576 ~~~h~~~~v~~v~fs~d~~-l-~s~~~D~~i~lW~~ 609 (611)
T 1nr0_A 576 KGAHAMSSVNSVIWLNETT-I-VSAGQDSNIKFWNV 609 (611)
T ss_dssp TTSSTTSCEEEEEEEETTE-E-EEEETTSCEEEEEC
T ss_pred hccCcccCeeEEEEcCCCE-E-EEecCCCCEEEEec
Confidence 5678 78899999999999 7 99999999999986
No 7
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=6.9e-38 Score=314.66 Aligned_cols=281 Identities=14% Similarity=0.222 Sum_probs=236.2
Q ss_pred CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (612)
Q Consensus 2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (612)
++.+|+++ +|+|||++|++|+.||+|++||+.++..+..+..|...+.+..|+++
T Consensus 12 h~~~V~~~--~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~----------------------- 66 (304)
T 2ynn_A 12 RSDRVKGI--DFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIAR----------------------- 66 (304)
T ss_dssp ECSCEEEE--EECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGG-----------------------
T ss_pred CCCceEEE--EECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCC-----------------------
Confidence 35678655 99999999999999999999999999999999888777776666665
Q ss_pred cccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCC-ceeEEEecCCC
Q 007234 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG-SLLGKFRASTK 160 (612)
Q Consensus 82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~-~~~~~~~~~~~ 160 (612)
++++++|+.||.|++||+.+++.+..+ .+|...|++++|+|++++|++|+.|++|++||++++ .....+.+|..
T Consensus 67 ----~~~l~s~s~d~~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~ 141 (304)
T 2ynn_A 67 ----KNWIIVGSDDFRIRVFNYNTGEKVVDF-EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEH 141 (304)
T ss_dssp ----GTEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCS
T ss_pred ----CCEEEEECCCCEEEEEECCCCcEEEEE-eCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCC
Confidence 789999999999999999999998776 579999999999999999999999999999999887 45667889999
Q ss_pred CeeEEEECC-CCCEEEEeC--CeEEEEEcCCCeeEEEE-ecCCCCEEEEEEee--CCcEEEEEEcCCCeEEEEEcCCCcc
Q 007234 161 GISCMAVSS-DGKMLATAA--GQLKTFNCSDHKKMQKF-SGHPGAVRFMTFSD--NGKYVLSSAVGERYIALWRTDGVKK 234 (612)
Q Consensus 161 ~v~~l~~sp-dg~~l~~~~--g~i~lwd~~~~~~~~~~-~~h~~~v~~l~~sp--~~~~l~s~s~~d~~i~vwd~~~~~~ 234 (612)
.|.+++|+| ++.++++|+ ++|++||++++.....+ .+|...+..+.|+| ++.+|++++ .|++|++||+++++
T Consensus 142 ~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s-~D~~i~iWd~~~~~- 219 (304)
T 2ynn_A 142 FVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITAS-DDLTIKIWDYQTKS- 219 (304)
T ss_dssp CEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEE-TTSEEEEEETTTTE-
T ss_pred cEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEc-CCCeEEEEeCCCCc-
Confidence 999999999 678999988 89999999888765555 45668899999987 678999987 79999999999876
Q ss_pred ccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhh
Q 007234 235 QSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAI 314 (612)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i 314 (612)
++..+..+...+..+.|+ |++.+|++++.||.|++||..+++.++
T Consensus 220 ----~~~~~~~h~~~v~~~~~~-----p~~~~l~s~s~Dg~i~iWd~~~~~~~~-------------------------- 264 (304)
T 2ynn_A 220 ----CVATLEGHMSNVSFAVFH-----PTLPIIISGSEDGTLKIWNSSTYKVEK-------------------------- 264 (304)
T ss_dssp ----EEEEEECCSSCEEEEEEC-----SSSSEEEEEETTSCEEEEETTTCCEEE--------------------------
T ss_pred ----cceeeCCCCCCEEEEEEC-----CCCCEEEEEcCCCeEEEEECCCCceee--------------------------
Confidence 345566666667778887 999999999999999999987765432
Q ss_pred hcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCc--eEeccccceeeecceeee
Q 007234 315 FAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGV--LLPMSQSLLKSKRGRYVQ 380 (612)
Q Consensus 315 ~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~--~l~~s~s~d~~~~~w~~~ 380 (612)
++..|...+++++++|+|. ++ ++|++|+ +.+|.++
T Consensus 265 -----------------------------~~~~~~~~~~~~~~~~~~~~~~~-asg~~~g-~~~~~~~ 301 (304)
T 2ynn_A 265 -----------------------------TLNVGLERSWCIATHPTGRKNYI-ASGFDNG-FTVLSLG 301 (304)
T ss_dssp -----------------------------EECCSSSSEEEEEECTTCGGGCE-EEEETTE-EEEEECC
T ss_pred -----------------------------eccCCCccEEEEEECCCCCceEE-EEecCCc-eEEEEec
Confidence 3334555789999998885 45 7776554 5666653
No 8
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=4.1e-37 Score=309.98 Aligned_cols=281 Identities=22% Similarity=0.319 Sum_probs=239.2
Q ss_pred CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (612)
Q Consensus 2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (612)
|..+|+++ +|+|+|++||+|+.||.|++||..+++....+.+|...+.++.|+++
T Consensus 22 h~~~v~~~--~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~----------------------- 76 (312)
T 4ery_A 22 HTKAVSSV--KFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD----------------------- 76 (312)
T ss_dssp CSSCEEEE--EECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTT-----------------------
T ss_pred cCCcEEEE--EECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCC-----------------------
Confidence 45788655 99999999999999999999999999999999887776666666555
Q ss_pred cccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCC
Q 007234 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG 161 (612)
Q Consensus 82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~ 161 (612)
++++++|+.||.|++||+.+++.+..+ .+|...|.+++|+|++++|++|+.|+.|++||+++++.+..+..|..+
T Consensus 77 ----~~~l~s~~~d~~i~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 151 (312)
T 4ery_A 77 ----SNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 151 (312)
T ss_dssp ----SSEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSC
T ss_pred ----CCEEEEECCCCEEEEEECCCCcEEEEE-cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCc
Confidence 889999999999999999999988766 579999999999999999999999999999999999999999999999
Q ss_pred eeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEe-cCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccce
Q 007234 162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS-GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS 238 (612)
Q Consensus 162 v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~-~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~ 238 (612)
|.+++|+|+++++++++ |.|++||+++++.+..+. .+..++..++|+|+++++++++ .|+.|++||+.+++..
T Consensus 152 v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~--- 227 (312)
T 4ery_A 152 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT-LDNTLKLWDYSKGKCL--- 227 (312)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEE-TTTEEEEEETTTTEEE---
T ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEc-CCCeEEEEECCCCcEE---
Confidence 99999999999999988 899999999998887764 5667899999999999999987 7999999999987643
Q ss_pred eeEeec-CCc--eeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhh
Q 007234 239 CVLAME-HPA--VFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIF 315 (612)
Q Consensus 239 ~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~ 315 (612)
..+. |.. ..+...... +++.+|++++.||.|++||+.+++.+.
T Consensus 228 --~~~~~~~~~~~~~~~~~~~-----~~~~~l~sg~~dg~i~vwd~~~~~~~~--------------------------- 273 (312)
T 4ery_A 228 --KTYTGHKNEKYCIFANFSV-----TGGKWIVSGSEDNLVYIWNLQTKEIVQ--------------------------- 273 (312)
T ss_dssp --EEECSSCCSSSCCCEEEEC-----SSSCEEEECCTTSCEEEEETTTCCEEE---------------------------
T ss_pred --EEEEecCCceEEEEEEEEe-----CCCcEEEEECCCCEEEEEECCCchhhh---------------------------
Confidence 2222 221 122222333 678999999999999999987654321
Q ss_pred cccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEecccc--ceeeecceee
Q 007234 316 AAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQS--LLKSKRGRYV 379 (612)
Q Consensus 316 ~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s--~d~~~~~w~~ 379 (612)
.+.+|...|.+++|+|++.++ ++++ .|+++++|+.
T Consensus 274 ----------------------------~~~~h~~~v~~~~~~p~~~~l-~s~~~~~d~~i~~W~~ 310 (312)
T 4ery_A 274 ----------------------------KLQGHTDVVISTACHPTENII-ASAALENDKTIKLWKS 310 (312)
T ss_dssp ----------------------------EECCCSSCEEEEEECSSSSEE-EEEECTTTCCEEEEEC
T ss_pred ----------------------------hhhccCCcEEEEeecCcCCce-EEEEccCCccEEEecC
Confidence 445677789999999999999 7775 6999999975
No 9
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=3.8e-37 Score=337.32 Aligned_cols=315 Identities=20% Similarity=0.271 Sum_probs=266.1
Q ss_pred CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (612)
Q Consensus 2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (612)
+..+|..+ +|+|||++|++++.|+.|++||. +++....+.+|...+.++.|+++
T Consensus 261 ~~~~v~~v--~~~~d~~~l~~~~~d~~i~~w~~-~~~~~~~~~~h~~~v~~~~~~~~----------------------- 314 (577)
T 2ymu_A 261 HSSSVNGV--AFRPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPD----------------------- 314 (577)
T ss_dssp CSSCEEEE--EECTTSSEEEEEETTSCEEEEET-TSCEEEEECCCSSCEEEEEECTT-----------------------
T ss_pred CCCCEEEE--EEcCCCCEEEEEeCCCEEEEEeC-CCcEEEEEecCCCCeEEEEECCC-----------------------
Confidence 34677555 99999999999999999999996 57788888888877777777666
Q ss_pred cccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCC
Q 007234 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG 161 (612)
Q Consensus 82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~ 161 (612)
+..+++++.||.|++||....... .+ .+|...|.+++|+|+++++++++.|+.|++||. +++.+..+..|...
T Consensus 315 ----~~~l~t~~~d~~i~~w~~~~~~~~-~~-~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~ 387 (577)
T 2ymu_A 315 ----GQTIASASDDKTVKLWNRNGQHLQ-TL-TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSS 387 (577)
T ss_dssp ----SSEEEEEETTSCEEEEETTSCEEE-EE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSC
T ss_pred ----CCEEEEEeCCCeEEEEeCCCCeeE-EE-eCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCC
Confidence 889999999999999998765543 44 579999999999999999999999999999994 67888999999999
Q ss_pred eeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCcccccee
Q 007234 162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC 239 (612)
Q Consensus 162 v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~ 239 (612)
|.+++|+|+|++|++++ +.|++||. +++.+..+.+|...|.+++|+|++++|++++ .|+.|++||.... .
T Consensus 388 v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~-~d~~v~~w~~~~~------~ 459 (577)
T 2ymu_A 388 VRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASAS-DDKTVKLWNRNGQ------L 459 (577)
T ss_dssp EEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEE-TTSEEEEEETTSC------E
T ss_pred eEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEc-CCCEEEEEECCCC------E
Confidence 99999999999999987 89999995 6778889999999999999999999999987 7999999997543 2
Q ss_pred eEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhcccc
Q 007234 240 VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKL 319 (612)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~ 319 (612)
...+..+...+..++|+ |++++|++++.|+.|++||. +++.++....+...+.+.. |+|+++ .+++++.
T Consensus 460 ~~~~~~~~~~v~~~~~s-----pd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~-~s~dg~----~l~s~~~ 528 (577)
T 2ymu_A 460 LQTLTGHSSSVRGVAFS-----PDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVA-FSPDGQ----TIASASD 528 (577)
T ss_dssp EEEEECCSSCEEEEEEC-----TTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEE-ECTTSS----CEEEEET
T ss_pred EEEEcCCCCCEEEEEEc-----CCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEE-EcCCCC----EEEEEEC
Confidence 33444555667778887 99999999999999999995 5666655554444444333 788988 8999999
Q ss_pred cceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeeccee
Q 007234 320 QDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY 378 (612)
Q Consensus 320 d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~ 378 (612)
|+.+++||. .......+.+|...|++++|+|||++| +|+|.|+++++|+
T Consensus 529 dg~v~lwd~---------~~~~~~~~~~h~~~v~~~~fs~dg~~l-~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 529 DKTVKLWNR---------NGQLLQTLTGHSSSVWGVAFSPDGQTI-ASASSDKTVKLWN 577 (577)
T ss_dssp TSEEEEECT---------TSCEEEEEECCSSCEEEEEECTTSSCE-EEEETTSCEEEEC
T ss_pred cCEEEEEeC---------CCCEEEEEcCCCCCEEEEEEcCCCCEE-EEEeCCCEEEEeC
Confidence 888877761 234566888999999999999999999 9999999999996
No 10
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=6.2e-37 Score=309.90 Aligned_cols=287 Identities=15% Similarity=0.148 Sum_probs=238.2
Q ss_pred CCcccceeEEEEcCCC-CEEEEEeCCCcEEEEECCC-----CcEEEEeeccCCccccccccccccccccccceeEEEeee
Q 007234 2 GSSNIRDILTSFSPAL-DYFAICSGDARIKIWDTLK-----GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLS 75 (612)
Q Consensus 2 ~s~~V~~l~~~fspdg-~~las~s~dg~i~iwd~~~-----~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~ 75 (612)
|.++|.++ +|+|++ ++|++|+.|++|++||+.+ +..+..+.+|...+.++.|+++
T Consensus 16 H~~~V~~l--~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~d----------------- 76 (319)
T 3frx_A 16 HNGWVTSL--ATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTAD----------------- 76 (319)
T ss_dssp CSSCEEEE--EECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTT-----------------
T ss_pred ccceEEEE--EccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCC-----------------
Confidence 56788665 999965 8999999999999999864 3456778888887777777766
Q ss_pred cccccccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEE
Q 007234 76 VDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKF 155 (612)
Q Consensus 76 ~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~ 155 (612)
+.++++|+.||.|++||+.+++.+..+ .+|...|.+++|+|++.+|++|+.|++|++||++ ++++..+
T Consensus 77 ----------g~~l~s~s~D~~v~~wd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~ 144 (319)
T 3frx_A 77 ----------GAYALSASWDKTLRLWDVATGETYQRF-VGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATL 144 (319)
T ss_dssp ----------SSEEEEEETTSEEEEEETTTTEEEEEE-ECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEE
T ss_pred ----------CCEEEEEeCCCEEEEEECCCCCeeEEE-ccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEE
Confidence 889999999999999999999988776 5799999999999999999999999999999985 6678888
Q ss_pred ecCCCCeeEEEECCC------CCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEE
Q 007234 156 RASTKGISCMAVSSD------GKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALW 227 (612)
Q Consensus 156 ~~~~~~v~~l~~spd------g~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vw 227 (612)
.+|...|.+++++|. +..+++++ +.|++||+++++....+.+|...|.+++|+|+|++|++++ .|+.|++|
T Consensus 145 ~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~-~dg~i~iw 223 (319)
T 3frx_A 145 LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAG-KDGEIMLW 223 (319)
T ss_dssp CCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEE-TTCEEEEE
T ss_pred eccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEe-CCCeEEEE
Confidence 899999999999985 44788887 8999999999999999999999999999999999999998 79999999
Q ss_pred EcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCC
Q 007234 228 RTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQ 307 (612)
Q Consensus 228 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~ 307 (612)
|+.+++.. ..+.++. .+..++|+ |++.++++++.+ .+++|++.....+....+. .
T Consensus 224 d~~~~~~~-----~~~~~~~-~v~~~~~s-----p~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~-------------~ 278 (319)
T 3frx_A 224 NLAAKKAM-----YTLSAQD-EVFSLAFS-----PNRYWLAAATAT-GIKVFSLDPQYLVDDLRPE-------------F 278 (319)
T ss_dssp ETTTTEEE-----EEEECCS-CEEEEEEC-----SSSSEEEEEETT-EEEEEEETTEEEEEEECCC-------------C
T ss_pred ECCCCcEE-----EEecCCC-cEEEEEEc-----CCCCEEEEEcCC-CcEEEEeCcCeeeeccCcc-------------c
Confidence 99987643 4444444 45667787 999999888765 5999998766544321111 0
Q ss_pred cccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceeee
Q 007234 308 KSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (612)
Q Consensus 308 ~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~~ 380 (612)
. + ....|...+.+++|||||++| ++|+.|+.+++|++.
T Consensus 279 ~------------~----------------------~~~~~~~~v~~~~~spdg~~l-~sg~~Dg~i~vWd~~ 316 (319)
T 3frx_A 279 A------------G----------------------YSKAAEPHAVSLAWSADGQTL-FAGYTDNVIRVWQVM 316 (319)
T ss_dssp T------------T----------------------CCGGGCCCEEEEEECTTSSEE-EEEETTSCEEEEEEE
T ss_pred c------------c----------------------cccCcCcceeEEEECCCCCEE-EEeecCceEEEEEEe
Confidence 0 0 011344578899999999999 999999999999974
No 11
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2.9e-38 Score=327.82 Aligned_cols=289 Identities=16% Similarity=0.237 Sum_probs=242.2
Q ss_pred CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (612)
Q Consensus 2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (612)
|.++|+++ +|+|+|++||+|+.||+|+|||+.+++....+..|...+.++.|+++
T Consensus 65 H~~~V~~~--~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~----------------------- 119 (380)
T 3iz6_a 65 HSGKVYSL--DWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPN----------------------- 119 (380)
T ss_dssp CSSCEEEE--EECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTT-----------------------
T ss_pred cccEEEEE--EEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCC-----------------------
Confidence 46788655 99999999999999999999999999999999999988888888877
Q ss_pred cccCCcEEEEEECCCcEEEEEcCCCe------EEEEeccCCCCCeEEEEEecCC-CEEEEEecCCcEEEEECCCCceeEE
Q 007234 82 RKLGSSLLVLGTGGGDVLALAVSAGQ------LKWRLSDCHPGGVSAISFATHG-SCIYSAGADGMVCEIDPLTGSLLGK 154 (612)
Q Consensus 82 ~~~~~~~l~~gs~~g~I~vwd~~~~~------~~~~~~~~h~~~V~~l~~sp~~-~~l~s~s~dg~v~iwd~~~~~~~~~ 154 (612)
+.++++|+.|+.|++||+.+.. .......+|.+.|.++.|+|++ ..|++|+.|++|++||+.+++.+..
T Consensus 120 ----g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~ 195 (380)
T 3iz6_a 120 ----GQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISI 195 (380)
T ss_dssp ----SSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEE
T ss_pred ----CCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEE
Confidence 8899999999999999997532 1223446899999999999964 5699999999999999999999888
Q ss_pred E-----ecCCCCeeEEEECC-CCCEEEEeC--CeEEEEEcC-CCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEE
Q 007234 155 F-----RASTKGISCMAVSS-DGKMLATAA--GQLKTFNCS-DHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIA 225 (612)
Q Consensus 155 ~-----~~~~~~v~~l~~sp-dg~~l~~~~--g~i~lwd~~-~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~ 225 (612)
+ .+|...|.+++|+| ++.++++|+ +.|++||++ +++.+..+.+|.+.|.+++|+|++++|++++ .|++|+
T Consensus 196 ~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s-~D~~i~ 274 (380)
T 3iz6_a 196 FGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGS-DDGTCR 274 (380)
T ss_dssp ECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEEC-SSSCEE
T ss_pred eecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEc-CCCeEE
Confidence 7 56788999999987 889999988 899999998 4577889999999999999999999999987 799999
Q ss_pred EEEcCCCccccceeeEeec-----CCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecc
Q 007234 226 LWRTDGVKKQSASCVLAME-----HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSE 300 (612)
Q Consensus 226 vwd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 300 (612)
+||+.++... ..+... .....+..++|+ |+|++|++|+.||.|++||..+++.+....
T Consensus 275 lwd~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~s-----~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~--------- 337 (380)
T 3iz6_a 275 LFDMRTGHQL---QVYNREPDRNDNELPIVTSVAFS-----ISGRLLFAGYSNGDCYVWDTLLAEMVLNLG--------- 337 (380)
T ss_dssp EEETTTTEEE---EEECCCCSSSCCSSCSCSEEEEC-----SSSSEEEEECTTSCEEEEETTTCCEEEEEC---------
T ss_pred EEECCCCcEE---EEecccccccccccCceEEEEEC-----CCCCEEEEEECCCCEEEEECCCCceEEEEe---------
Confidence 9999988644 112111 112235677887 999999999999999999987665432100
Q ss_pred cccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceeee
Q 007234 301 DVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (612)
Q Consensus 301 ~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~~ 380 (612)
. ...+|.+.|.+++|||||.+| +|||.|+++++|++.
T Consensus 338 -----------------------------------~-------~~~~h~~~v~~l~~s~dg~~l-~sgs~D~~i~iW~~~ 374 (380)
T 3iz6_a 338 -----------------------------------T-------LQNSHEGRISCLGLSSDGSAL-CTGSWDKNLKIWAFS 374 (380)
T ss_dssp -----------------------------------C-------SCSSCCCCCCEEEECSSSSEE-EEECTTSCEEEEECC
T ss_pred -----------------------------------c-------ccCCCCCceEEEEECCCCCEE-EEeeCCCCEEEEecC
Confidence 0 012577789999999999999 999999999999874
No 12
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=4.8e-37 Score=314.31 Aligned_cols=294 Identities=14% Similarity=0.148 Sum_probs=230.3
Q ss_pred ccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEE---eeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234 5 NIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTE---FADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (612)
Q Consensus 5 ~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~---~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (612)
+|+.+ +|||||++||+|+.||+|+|||+.++..... ..+|...+.++.|+++
T Consensus 18 ~v~~l--~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~----------------------- 72 (345)
T 3fm0_A 18 RCWFL--AWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPC----------------------- 72 (345)
T ss_dssp CEEEE--EECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTT-----------------------
T ss_pred cEEEE--EECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCC-----------------------
Confidence 67555 9999999999999999999999988864322 2455555555555544
Q ss_pred cccCCcEEEEEECCCcEEEEEcCCCe--EEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCc---eeEEEe
Q 007234 82 RKLGSSLLVLGTGGGDVLALAVSAGQ--LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS---LLGKFR 156 (612)
Q Consensus 82 ~~~~~~~l~~gs~~g~I~vwd~~~~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~---~~~~~~ 156 (612)
+.+|++|+.||.|++|++..+. ++..+ .+|...|.+++|+|++++|++|+.|++|++||+.++. ++..+.
T Consensus 73 ----g~~l~s~s~D~~v~iw~~~~~~~~~~~~~-~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~ 147 (345)
T 3fm0_A 73 ----GNYLASASFDATTCIWKKNQDDFECVTTL-EGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLN 147 (345)
T ss_dssp ----SSEEEEEETTSCEEEEEECCC-EEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEEC
T ss_pred ----CCEEEEEECCCcEEEEEccCCCeEEEEEc-cCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEec
Confidence 8899999999999999998774 34344 6899999999999999999999999999999998763 456778
Q ss_pred cCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCe--eEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCC
Q 007234 157 ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHK--KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (612)
Q Consensus 157 ~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~--~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~ 232 (612)
.|...|.+++|+|++++|++++ +.|++||.++++ +...+.+|...|.+++|+|+|++|++++ .|++|++|+....
T Consensus 148 ~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s-~D~~v~iW~~~~~ 226 (345)
T 3fm0_A 148 SHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCS-DDRTVRIWRQYLP 226 (345)
T ss_dssp CCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEEEECT
T ss_pred CcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEe-CCCeEEEeccccC
Confidence 8999999999999999999998 899999998875 4578899999999999999999999998 7999999997443
Q ss_pred cccc----------ceeeEeec-CCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeeccc
Q 007234 233 KKQS----------ASCVLAME-HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSED 301 (612)
Q Consensus 233 ~~~~----------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 301 (612)
.... ..++..+. .+...+..+.|+ +++..|++++.|+.|++|+.........
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~-----~~~~~l~s~~~d~~i~vw~~~~~~~~~~------------ 289 (345)
T 3fm0_A 227 GNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWC-----QLTGALATACGDDAIRVFQEDPNSDPQQ------------ 289 (345)
T ss_dssp TCTTCCCCC---CEEEEEEEECSSCSSCEEEEEEC-----TTTCCEEEEETTSCEEEEEECTTSCTTS------------
T ss_pred CCCccceeeccCCccceeEEecCCCCCcEEEEEEe-----cCCCEEEEEeCCCeEEEEEeCCCCCcce------------
Confidence 2110 11222222 244556667777 8999999999999999999765432100
Q ss_pred ccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCc-eEeccccceeeecceeee
Q 007234 302 VNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGV-LLPMSQSLLKSKRGRYVQ 380 (612)
Q Consensus 302 ~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~-~l~~s~s~d~~~~~w~~~ 380 (612)
+.. ........+|...|.+++|+|++. +| +|||.|+++++|+..
T Consensus 290 ---~~~-------------------------------~~~~~~~~~h~~~V~~v~~~p~~~~~l-aS~s~Dg~v~~W~~~ 334 (345)
T 3fm0_A 290 ---PTF-------------------------------SLTAHLHQAHSQDVNCVAWNPKEPGLL-ASCSDDGEVAFWKYQ 334 (345)
T ss_dssp ---CCE-------------------------------EEEEEETTSSSSCEEEEEECSSSTTEE-EEEETTSCEEEEEEC
T ss_pred ---eeE-------------------------------EEEeeecccccCcEeEeEEeCCCceEE-EEcCCCCcEEEEEec
Confidence 000 000112346888999999999985 77 999999999999984
Q ss_pred c
Q 007234 381 N 381 (612)
Q Consensus 381 ~ 381 (612)
+
T Consensus 335 ~ 335 (345)
T 3fm0_A 335 R 335 (345)
T ss_dssp C
T ss_pred C
Confidence 3
No 13
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=4.2e-38 Score=321.47 Aligned_cols=290 Identities=11% Similarity=0.081 Sum_probs=222.3
Q ss_pred cccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccc
Q 007234 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (612)
Q Consensus 4 ~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (612)
..|.++ +|||||++|++++ |+++++||.. +..+......... .+.. ........+.+++|.+
T Consensus 31 ~~v~~~--~fs~dG~~l~~~s-d~~~r~Wd~~----~~~~~~~~~~~~~-~~~~--~~~~~~~~v~~~~~s~-------- 92 (344)
T 4gqb_B 31 RQLEAA--RYRSDGALLLGAS-SLSGRCWAGS----LWLFKDPCAAPNE-GFCS--AGVQTEAGVADLTWVG-------- 92 (344)
T ss_dssp SEEEEE--EECTTSCEEEEEE-CCSSSCCCEE----EEEESSGGGTTCG-GGCS--EEEEESSCEEEEEEET--------
T ss_pred CCEEEE--EECCCCCEEEEEe-CCceEEeece----eeeeccccccCCc-ceee--eeeccCCCEEEEEEeC--------
Confidence 456544 9999999999887 7788999732 1222111100000 0000 0000123467788876
Q ss_pred cCCcEEEEEECCCcEEEEEcCCCeEEEE---eccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCC
Q 007234 84 LGSSLLVLGTGGGDVLALAVSAGQLKWR---LSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK 160 (612)
Q Consensus 84 ~~~~~l~~gs~~g~I~vwd~~~~~~~~~---~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~ 160 (612)
+..+++|+.||.|+|||+.+++.+.. ...+|...|++++|+|+|++|++|+.|++|++||+.+++++..+.+|..
T Consensus 93 --d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~ 170 (344)
T 4gqb_B 93 --ERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAA 170 (344)
T ss_dssp --TTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred --CCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCC
Confidence 34688999999999999999875432 2358999999999999999999999999999999999999999999999
Q ss_pred CeeEEEECCCCC-EEEEeC--CeEEEEEcCCCeeEEEEe--cCCCCEEEEEEeeCC-cEEEEEEcCCCeEEEEEcCCCcc
Q 007234 161 GISCMAVSSDGK-MLATAA--GQLKTFNCSDHKKMQKFS--GHPGAVRFMTFSDNG-KYVLSSAVGERYIALWRTDGVKK 234 (612)
Q Consensus 161 ~v~~l~~spdg~-~l~~~~--g~i~lwd~~~~~~~~~~~--~h~~~v~~l~~sp~~-~~l~s~s~~d~~i~vwd~~~~~~ 234 (612)
.|.+++|+|++. ++++++ ++|++||+++++....+. .|...+.+++|+|++ +++++++ .|+.|++||+++++.
T Consensus 171 ~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~-~dg~v~~wd~~~~~~ 249 (344)
T 4gqb_B 171 QVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGD-ENGTVSLVDTKSTSC 249 (344)
T ss_dssp CEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEE-TTSEEEEEESCC--C
T ss_pred ceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEec-cCCcEEEEECCCCcE
Confidence 999999999885 677776 899999999999887764 456679999999954 5677776 799999999998764
Q ss_pred ccceeeEeecCCceeEEeEEecCCccCCCC-cEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchh
Q 007234 235 QSASCVLAMEHPAVFMDCRCIDNGGVDDAG-LYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAA 313 (612)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 313 (612)
. ..+..+...+..++|+ |++ ++|++++.||+|++||..+++.+
T Consensus 250 ~-----~~~~~h~~~v~~v~fs-----p~g~~~lasgs~D~~i~vwd~~~~~~~-------------------------- 293 (344)
T 4gqb_B 250 V-----LSSAVHSQCVTGLVFS-----PHSVPFLASLSEDCSLAVLDSSLSELF-------------------------- 293 (344)
T ss_dssp C-----EEEECCSSCEEEEEEC-----SSSSCCEEEEETTSCEEEECTTCCEEE--------------------------
T ss_pred E-----EEEcCCCCCEEEEEEc-----cCCCeEEEEEeCCCeEEEEECCCCcEE--------------------------
Confidence 3 4555666677788887 887 57999999999999997655321
Q ss_pred hhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceeee
Q 007234 314 IFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (612)
Q Consensus 314 i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~~ 380 (612)
.+.+|.+.|.+++|||||..+++|+|.|+++++|++.
T Consensus 294 ------------------------------~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~ 330 (344)
T 4gqb_B 294 ------------------------------RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVP 330 (344)
T ss_dssp ------------------------------EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC
T ss_pred ------------------------------EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECC
Confidence 2346888999999999998664899999999999884
No 14
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1e-36 Score=317.64 Aligned_cols=303 Identities=16% Similarity=0.221 Sum_probs=235.3
Q ss_pred CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (612)
Q Consensus 2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (612)
+.++|.+ ++|||||++||+|+ +++++||++.+++.+..+..+.....................+.++.|.+.
T Consensus 63 h~~~V~~--v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d----- 134 (393)
T 1erj_A 63 HTSVVCC--VKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPD----- 134 (393)
T ss_dssp CSSCCCE--EEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTT-----
T ss_pred CCCEEEE--EEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCC-----
Confidence 4567854 49999999999986 789999999999998888655422110000000000001123567777664
Q ss_pred cccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCC
Q 007234 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG 161 (612)
Q Consensus 82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~ 161 (612)
++++++|+.||.|++||+.+++.+..+ .+|...|++++|+|++++|++|+.|++|++||++++++...+. +...
T Consensus 135 ----g~~l~s~~~d~~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~ 208 (393)
T 1erj_A 135 ----GKFLATGAEDRLIRIWDIENRKIVMIL-QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDG 208 (393)
T ss_dssp ----SSEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSC
T ss_pred ----CCEEEEEcCCCeEEEEECCCCcEEEEE-ccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCC
Confidence 789999999999999999999988666 6899999999999999999999999999999999999888876 4567
Q ss_pred eeEEEECC-CCCEEEEeC--CeEEEEEcCCCeeEEEE-------ecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCC
Q 007234 162 ISCMAVSS-DGKMLATAA--GQLKTFNCSDHKKMQKF-------SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (612)
Q Consensus 162 v~~l~~sp-dg~~l~~~~--g~i~lwd~~~~~~~~~~-------~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~ 231 (612)
+.+++|+| +++++++++ |.|++||+++++.+..+ .+|...|.+++|+|+|++|++++ .|+.|++||+..
T Consensus 209 v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s-~d~~v~~wd~~~ 287 (393)
T 1erj_A 209 VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS-LDRSVKLWNLQN 287 (393)
T ss_dssp EEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEE-TTSEEEEEEC--
T ss_pred cEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEe-CCCEEEEEECCC
Confidence 99999999 899999988 89999999999887776 68999999999999999999987 799999999986
Q ss_pred Cccc-------cceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccC
Q 007234 232 VKKQ-------SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNS 304 (612)
Q Consensus 232 ~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s 304 (612)
.... ...+...+..+...+..++++ +++.+|++++.||.|++||..+++.+.
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-----~~~~~l~sgs~D~~v~iwd~~~~~~~~---------------- 346 (393)
T 1erj_A 288 ANNKSDSKTPNSGTCEVTYIGHKDFVLSVATT-----QNDEYILSGSKDRGVLFWDKKSGNPLL---------------- 346 (393)
T ss_dssp -------------CEEEEEECCSSCEEEEEEC-----GGGCEEEEEETTSEEEEEETTTCCEEE----------------
T ss_pred CCCcccccCCCCCcceEEEecccCcEEEEEEC-----CCCCEEEEEeCCCeEEEEECCCCeEEE----------------
Confidence 5321 012333444455556677787 899999999999999999987664321
Q ss_pred CCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecC------CCceEeccccceeeeccee
Q 007234 305 KSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQ------DGVLLPMSQSLLKSKRGRY 378 (612)
Q Consensus 305 ~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~------dg~~l~~s~s~d~~~~~w~ 378 (612)
.+.+|...|.+++|++ ++.+| +|||.|+++++|+
T Consensus 347 ---------------------------------------~l~~h~~~v~~v~~~~~~~~~p~~~~l-~sgs~Dg~i~iW~ 386 (393)
T 1erj_A 347 ---------------------------------------MLQGHRNSVISVAVANGSSLGPEYNVF-ATGSGDCKARIWK 386 (393)
T ss_dssp ---------------------------------------EEECCSSCEEEEEECSSCTTCTTCEEE-EEEETTSEEEEEE
T ss_pred ---------------------------------------EECCCCCCEEEEEecCCcCcCCCCCEE-EEECCCCcEEECc
Confidence 3456777888888775 78889 9999999999998
Q ss_pred ee
Q 007234 379 VQ 380 (612)
Q Consensus 379 ~~ 380 (612)
..
T Consensus 387 ~~ 388 (393)
T 1erj_A 387 YK 388 (393)
T ss_dssp EE
T ss_pred cc
Confidence 74
No 15
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.8e-37 Score=319.02 Aligned_cols=282 Identities=12% Similarity=0.113 Sum_probs=218.0
Q ss_pred CCcccceeEEEEcCCCCEEEEEeC------CCcEEEEECCCCcEEEEe----eccCCccccccccccccccccccceeEE
Q 007234 2 GSSNIRDILTSFSPALDYFAICSG------DARIKIWDTLKGQVQTEF----ADIASTETTSLYGNRLEREHLSVDYTCM 71 (612)
Q Consensus 2 ~s~~V~~l~~~fspdg~~las~s~------dg~i~iwd~~~~~~~~~~----~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 71 (612)
+...|+++ +|||||++||+|+. |++|++|+..++.....+ ..|. ..+.++
T Consensus 41 H~~~V~~v--~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~------------------~~V~~~ 100 (357)
T 4g56_B 41 MEVQIGAV--RYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTE------------------AGVTDV 100 (357)
T ss_dssp CCSEEEEE--EECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECS------------------SCEEEE
T ss_pred ccCCEEEE--EECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCC------------------CCEEEE
Confidence 45678656 99999999999997 778999988776543222 1222 235667
Q ss_pred EeeecccccccccCCcEEEEEECCCcEEEEEcCCCeEEEE---eccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCC
Q 007234 72 KWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWR---LSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT 148 (612)
Q Consensus 72 ~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~---~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~ 148 (612)
+|.+. + .+++++.+|.|+|||+.+++.... ...+|...|++++|+|++++|++|+.|++|++||+.+
T Consensus 101 ~~s~d---------~-~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~ 170 (357)
T 4g56_B 101 AWVSE---------K-GILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQ 170 (357)
T ss_dssp EEETT---------T-EEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT
T ss_pred EEcCC---------C-CEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC
Confidence 77653 3 467789999999999998875422 2247999999999999999999999999999999999
Q ss_pred CceeEEEecCCCCeeEEEECCCCC-EEEEeC--CeEEEEEcCCCeeEEEE--ecCCCCEEEEEEeeCC-cEEEEEEcCCC
Q 007234 149 GSLLGKFRASTKGISCMAVSSDGK-MLATAA--GQLKTFNCSDHKKMQKF--SGHPGAVRFMTFSDNG-KYVLSSAVGER 222 (612)
Q Consensus 149 ~~~~~~~~~~~~~v~~l~~spdg~-~l~~~~--g~i~lwd~~~~~~~~~~--~~h~~~v~~l~~sp~~-~~l~s~s~~d~ 222 (612)
++.+..+.+|...|.+++|+|++. ++++++ |.|++||++++++...+ ..|...+.+++|+|++ .+|++++ .|+
T Consensus 171 ~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~-~d~ 249 (357)
T 4g56_B 171 KAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGD-ETG 249 (357)
T ss_dssp TEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEE-SSS
T ss_pred CcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEee-ccc
Confidence 999999999999999999999875 566665 89999999998876654 4567789999999985 5666666 799
Q ss_pred eEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCC-cEEEEEecCCcEEEEECCCcceecccCCceeEeeccc
Q 007234 223 YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAG-LYVLAISETGVCYIWYGQNIEELRNTKATKILSSSED 301 (612)
Q Consensus 223 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 301 (612)
.|++||+.+++.. ..+..+...+..++|+ |++ ++|++++.||+|+|||+++++.+
T Consensus 250 ~i~~wd~~~~~~~-----~~~~~~~~~v~~l~~s-----p~~~~~lasgs~D~~i~iwd~~~~~~~-------------- 305 (357)
T 4g56_B 250 NVSLVNIKNPDSA-----QTSAVHSQNITGLAYS-----YHSSPFLASISEDCTVAVLDADFSEVF-------------- 305 (357)
T ss_dssp CEEEEESSCGGGC-----EEECCCSSCEEEEEEC-----SSSSCCEEEEETTSCEEEECTTSCEEE--------------
T ss_pred ceeEEECCCCcEe-----EEEeccceeEEEEEEc-----CCCCCEEEEEeCCCEEEEEECCCCcEe--------------
Confidence 9999999987644 4455566667778887 776 67999999999999998766432
Q ss_pred ccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecC-CCceEeccccceeeecceeee
Q 007234 302 VNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQ-DGVLLPMSQSLLKSKRGRYVQ 380 (612)
Q Consensus 302 ~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~-dg~~l~~s~s~d~~~~~w~~~ 380 (612)
...+|...|.+++||| |+.+| +|+|.|+++++|++.
T Consensus 306 ------------------------------------------~~~~H~~~V~~vafsP~d~~~l-~s~s~Dg~v~iW~~~ 342 (357)
T 4g56_B 306 ------------------------------------------RDLSHRDFVTGVAWSPLDHSKF-TTVGWDHKVLHHHLP 342 (357)
T ss_dssp ------------------------------------------EECCCSSCEEEEEECSSSTTEE-EEEETTSCEEEEECC
T ss_pred ------------------------------------------EECCCCCCEEEEEEeCCCCCEE-EEEcCCCeEEEEECC
Confidence 1225777899999998 89999 999999999999984
Q ss_pred c
Q 007234 381 N 381 (612)
Q Consensus 381 ~ 381 (612)
.
T Consensus 343 ~ 343 (357)
T 4g56_B 343 S 343 (357)
T ss_dssp -
T ss_pred C
Confidence 3
No 16
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=8.7e-36 Score=304.71 Aligned_cols=292 Identities=14% Similarity=0.121 Sum_probs=228.5
Q ss_pred CCcccceeEEEE-----cC-CCCEEEEEeCCCcEEEEECCCC-------cEEEEeeccCCccccccccccccccccccce
Q 007234 2 GSSNIRDILTSF-----SP-ALDYFAICSGDARIKIWDTLKG-------QVQTEFADIASTETTSLYGNRLEREHLSVDY 68 (612)
Q Consensus 2 ~s~~V~~l~~~f-----sp-dg~~las~s~dg~i~iwd~~~~-------~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 68 (612)
|..+|+++ +| +| |+++||+|+.|++|+|||+.++ .....+.+|...+.++.|+++
T Consensus 20 H~~~V~~~--~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~---------- 87 (343)
T 2xzm_R 20 HSDWVTSI--VAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQE---------- 87 (343)
T ss_dssp CSSCEEEE--EECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSS----------
T ss_pred chhhhhhe--eeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCC----------
Confidence 56788666 88 76 9999999999999999998753 456667777776666666655
Q ss_pred eEEEeeecccccccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCC
Q 007234 69 TCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT 148 (612)
Q Consensus 69 ~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~ 148 (612)
+.++++|+.||.|++||+.+++.+..+ .+|...|.+++|+|++++|++|+.|++|++||+..
T Consensus 88 -----------------~~~l~s~s~D~~v~lwd~~~~~~~~~~-~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~ 149 (343)
T 2xzm_R 88 -----------------NCFAISSSWDKTLRLWDLRTGTTYKRF-VGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILG 149 (343)
T ss_dssp -----------------TTEEEEEETTSEEEEEETTSSCEEEEE-ECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSS
T ss_pred -----------------CCEEEEEcCCCcEEEEECCCCcEEEEE-cCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccC
Confidence 789999999999999999999988776 57999999999999999999999999999999974
Q ss_pred CceeEEEe---cCCCCeeEEEECCCC----------CEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcE
Q 007234 149 GSLLGKFR---ASTKGISCMAVSSDG----------KMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKY 213 (612)
Q Consensus 149 ~~~~~~~~---~~~~~v~~l~~spdg----------~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ 213 (612)
+...... .|...|.+++|+|++ .++++++ |.|++|| .+.+....+.+|...|.+++|+|+|++
T Consensus 150 -~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~ 227 (343)
T 2xzm_R 150 -ECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKY 227 (343)
T ss_dssp -CEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSE
T ss_pred -CceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCE
Confidence 3333333 577789999999987 6888887 8999999 456778889999999999999999999
Q ss_pred EEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCc
Q 007234 214 VLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKAT 293 (612)
Q Consensus 214 l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~ 293 (612)
|++++ .|+.|++||+...... ...+.+. ..+..++|+ |++.++++ +.|+.|++|++.+++.....
T Consensus 228 l~sgs-~dg~v~iwd~~~~~~~----~~~~~~~-~~v~~v~~s-----p~~~~la~-~~d~~v~iw~~~~~~~~~~~--- 292 (343)
T 2xzm_R 228 IATGG-KDKKLLIWDILNLTYP----QREFDAG-STINQIAFN-----PKLQWVAV-GTDQGVKIFNLMTQSKAPVC--- 292 (343)
T ss_dssp EEEEE-TTCEEEEEESSCCSSC----SEEEECS-SCEEEEEEC-----SSSCEEEE-EESSCEEEEESSSCCSCSEE---
T ss_pred EEEEc-CCCeEEEEECCCCccc----ceeecCC-CcEEEEEEC-----CCCCEEEE-ECCCCEEEEEeCCCCCCceE---
Confidence 99998 7999999999544322 1222222 236677887 88887764 56888999998876543200
Q ss_pred eeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceee
Q 007234 294 KILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKS 373 (612)
Q Consensus 294 ~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~ 373 (612)
.. .+... . ..+...+|...|.+++|+|||++| ++|+.|++
T Consensus 293 --~~------~~~~~------~-------------------------~~~~~~~~~~~v~~~~~sp~g~~l-~sg~~Dg~ 332 (343)
T 2xzm_R 293 --TI------EAEPI------T-------------------------KAEGQKGKNPQCTSLAWNALGKKL-FAGFTDGV 332 (343)
T ss_dssp --EC------CCCSG------G-------------------------GBTTBCCSCCCEEEEEECSSSCCE-EEEETTSE
T ss_pred --Ee------ecCcc------h-------------------------hhhhhcCCCCceEEEEECCCCCeE-EEecCCce
Confidence 00 00000 0 000123577789999999999999 99999999
Q ss_pred ecceeee
Q 007234 374 KRGRYVQ 380 (612)
Q Consensus 374 ~~~w~~~ 380 (612)
+++|++.
T Consensus 333 v~~w~~~ 339 (343)
T 2xzm_R 333 IRTFSFE 339 (343)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 9999874
No 17
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-36 Score=317.04 Aligned_cols=338 Identities=15% Similarity=0.230 Sum_probs=257.6
Q ss_pred CcccceeEEEEcCCCC-EEEEEeCCCcEEEEEC----CCCc------EEEEeeccCCccccccccccccccccccceeEE
Q 007234 3 SSNIRDILTSFSPALD-YFAICSGDARIKIWDT----LKGQ------VQTEFADIASTETTSLYGNRLEREHLSVDYTCM 71 (612)
Q Consensus 3 s~~V~~l~~~fspdg~-~las~s~dg~i~iwd~----~~~~------~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 71 (612)
.++|.++ +|+|+|+ +||+|+.||.|++||+ .+++ ....+........ ..+.....++++
T Consensus 45 ~~~v~~~--~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~v~~~ 114 (425)
T 1r5m_A 45 LDNIVSS--TWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSA--------SSGKTTNQVTCL 114 (425)
T ss_dssp CSCCSEE--EECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC--------------CBCEEEE
T ss_pred cCceEEE--EECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccc--------cccCCCCceEEE
Confidence 4678655 9999999 9999999999999999 8888 3444432100000 000123356677
Q ss_pred EeeecccccccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCce
Q 007234 72 KWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL 151 (612)
Q Consensus 72 ~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~ 151 (612)
.|.+. +.+|++|+.+|.|++|| .+++.+..+ .+|...|.+++|+|++++|++++.|+.|++||+.+++.
T Consensus 115 ~~s~~---------~~~l~~~~~dg~i~i~~-~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 183 (425)
T 1r5m_A 115 AWSHD---------GNSIVTGVENGELRLWN-KTGALLNVL-NFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTV 183 (425)
T ss_dssp EECTT---------SSEEEEEETTSCEEEEE-TTSCEEEEE-CCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEE
T ss_pred EEcCC---------CCEEEEEeCCCeEEEEe-CCCCeeeec-cCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcE
Confidence 77663 78999999999999999 666666566 57999999999999999999999999999999999999
Q ss_pred eEEEecCCCC---------------eeEEEECCCCCEEEEeC-CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEE
Q 007234 152 LGKFRASTKG---------------ISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVL 215 (612)
Q Consensus 152 ~~~~~~~~~~---------------v~~l~~spdg~~l~~~~-g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~ 215 (612)
+..+..+... +.+++|+|++.+++.+. |.|++||+++++.+..+.+|..+|.+++|+|++++|+
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 263 (425)
T 1r5m_A 184 MQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLL 263 (425)
T ss_dssp EEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEE
T ss_pred EEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEE
Confidence 9998877766 99999999876554444 9999999999999999999999999999999999999
Q ss_pred EEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCcee
Q 007234 216 SSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKI 295 (612)
Q Consensus 216 s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~ 295 (612)
+++ .|+.|++||+.+++.. ..+..+...+..+.|+ |++ ++++++.||.|++||+.+++.+........
T Consensus 264 ~~~-~d~~i~i~d~~~~~~~-----~~~~~~~~~i~~~~~~-----~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~ 331 (425)
T 1r5m_A 264 SAS-DDGTLRIWHGGNGNSQ-----NCFYGHSQSIVSASWV-----GDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGV 331 (425)
T ss_dssp EEE-TTSCEEEECSSSBSCS-----EEECCCSSCEEEEEEE-----TTT-EEEEEETTSEEEEEETTTTEEEEEEECTTC
T ss_pred EEc-CCCEEEEEECCCCccc-----eEecCCCccEEEEEEC-----CCC-EEEEEeCCCcEEEEECCCCcEeEecccCCc
Confidence 987 7999999999987643 3344455566777787 888 999999999999999999987766554333
Q ss_pred EeecccccCCCCcccchhhhcccccceecCCCceEEE-----EeCC-------ccCceEEEeeccCC--CeEEEEecCCC
Q 007234 296 LSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFV-----AYGL-------LLKPSFQKILVNSG--EDINLNCSQDG 361 (612)
Q Consensus 296 ~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~-----~~g~-------~~~~~~~~~~~h~~--~v~~l~~S~dg 361 (612)
.+.+.. ++|+++ .+++++.++.+++|+....- ..+. ........+..|.. .|.+++|+|||
T Consensus 332 ~i~~~~-~s~~~~----~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 406 (425)
T 1r5m_A 332 PIFAGR-ISQDGQ----KYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAG 406 (425)
T ss_dssp CEEEEE-ECTTSS----EEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTS
T ss_pred cEEEEE-EcCCCC----EEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCC
Confidence 333332 677877 88888888877766521000 0000 00125667788876 99999999999
Q ss_pred ceEeccccceeeecceee
Q 007234 362 VLLPMSQSLLKSKRGRYV 379 (612)
Q Consensus 362 ~~l~~s~s~d~~~~~w~~ 379 (612)
++| ++++.|+.+++|++
T Consensus 407 ~~l-~~~~~dg~i~iw~~ 423 (425)
T 1r5m_A 407 NKI-SVAYSLQEGSVVAI 423 (425)
T ss_dssp SEE-EEEESSSCCEEEEC
T ss_pred ceE-EEEecCceEEEEee
Confidence 999 99999999999987
No 18
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.4e-35 Score=324.83 Aligned_cols=317 Identities=21% Similarity=0.263 Sum_probs=262.4
Q ss_pred CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (612)
Q Consensus 2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (612)
+..+|+++ +|+|||++|++++.||.|++||. +++.+..+.+|...+.++.|+++
T Consensus 220 ~~~~v~~~--~~s~dg~~l~~~~~d~~i~~w~~-~~~~~~~~~~~~~~v~~v~~~~d----------------------- 273 (577)
T 2ymu_A 220 HSSSVRGV--AFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVNGVAFRPD----------------------- 273 (577)
T ss_dssp CSSCEEEE--EECTTSSCEEEEETTSCEEEECT-TSCEEEEECCCSSCEEEEEECTT-----------------------
T ss_pred CCCCEEEE--EECCCCCEEEEEeCCCEEEEEeC-CCCEEEEEecCCCCEEEEEEcCC-----------------------
Confidence 35677655 99999999999999999999996 57888888888877776666666
Q ss_pred cccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCC
Q 007234 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG 161 (612)
Q Consensus 82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~ 161 (612)
+..+++++.++.|++||.. ++....+ .+|...|.+++|+|+++.+++++.|++|++||.. ++.+..+..|...
T Consensus 274 ----~~~l~~~~~d~~i~~w~~~-~~~~~~~-~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~-~~~~~~~~~~~~~ 346 (577)
T 2ymu_A 274 ----GQTIASASDDKTVKLWNRN-GQLLQTL-TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQHLQTLTGHSSS 346 (577)
T ss_dssp ----SSEEEEEETTSCEEEEETT-SCEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCSSC
T ss_pred ----CCEEEEEeCCCEEEEEeCC-CcEEEEE-ecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC-CCeeEEEeCCCCC
Confidence 8889999999999999965 4555444 6899999999999999999999999999999975 5566788889999
Q ss_pred eeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCcccccee
Q 007234 162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC 239 (612)
Q Consensus 162 v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~ 239 (612)
+.+++|+|+|+++++++ |.|++||. +++.+..+.+|...|.+++|+|++++|++++ .|+.|++||.... .
T Consensus 347 v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~d~~v~~~~~~~~------~ 418 (577)
T 2ymu_A 347 VWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASAS-DDKTVKLWNRNGQ------L 418 (577)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEE-TTSEEEEECTTCC------E
T ss_pred EEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEe-CCCEEEEEeCCCC------E
Confidence 99999999999999987 89999995 6778889999999999999999999999987 7999999996432 2
Q ss_pred eEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhcccc
Q 007234 240 VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKL 319 (612)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~ 319 (612)
...+..+...+..+.|+ |++++|++++.|+.|++||.. ++.+.........+.+.. ++|+++ .+++++.
T Consensus 419 ~~~~~~~~~~v~~~~~s-----~d~~~l~~~~~d~~v~~w~~~-~~~~~~~~~~~~~v~~~~-~spd~~----~las~~~ 487 (577)
T 2ymu_A 419 LQTLTGHSSSVWGVAFS-----PDDQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVA-FSPDGQ----TIASASD 487 (577)
T ss_dssp EEEEECCSSCEEEEEEC-----TTSSEEEEEETTSEEEEEETT-SCEEEEEECCSSCEEEEE-ECTTSC----EEEEEET
T ss_pred EEEecCCCCCeEEEEEC-----CCCCEEEEEcCCCEEEEEECC-CCEEEEEcCCCCCEEEEE-EcCCCC----EEEEEeC
Confidence 33444555566777887 999999999999999999964 455544444333333333 788888 8899998
Q ss_pred cceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceeee
Q 007234 320 QDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (612)
Q Consensus 320 d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~~ 380 (612)
|+.+++|+. .....+.+.+|...|.+++|||||++| ++++.|+.+++|+..
T Consensus 488 d~~i~iw~~---------~~~~~~~~~~h~~~v~~l~~s~dg~~l-~s~~~dg~v~lwd~~ 538 (577)
T 2ymu_A 488 DKTVKLWNR---------NGQLLQTLTGHSSSVRGVAFSPDGQTI-ASASDDKTVKLWNRN 538 (577)
T ss_dssp TSEEEEEET---------TSCEEEEEECCSSCEEEEEECTTSSCE-EEEETTSEEEEECTT
T ss_pred CCEEEEEcC---------CCCEEEEEeCCCCCEEEEEEcCCCCEE-EEEECcCEEEEEeCC
Confidence 877776551 234556788999999999999999999 999999999999863
No 19
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-35 Score=299.91 Aligned_cols=287 Identities=14% Similarity=0.136 Sum_probs=216.2
Q ss_pred CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCC--cEEEEe-ec-cCCccccccccccccccccccceeEEEeeecc
Q 007234 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKG--QVQTEF-AD-IASTETTSLYGNRLEREHLSVDYTCMKWLSVD 77 (612)
Q Consensus 2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~--~~~~~~-~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~ 77 (612)
+..+|+++ +|+|+ +||+|+.||+|++||+.++ .....+ .+ |...+.++.|+++
T Consensus 13 h~~~v~~~--~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~------------------- 69 (330)
T 2hes_X 13 YKEKIWSF--DFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPH------------------- 69 (330)
T ss_dssp CSSCEEEE--EEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTT-------------------
T ss_pred CCCceeee--ccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCC-------------------
Confidence 56788655 99998 9999999999999999875 344444 23 5555555555544
Q ss_pred cccccccCCcEEEEEECCCcEEEEEcCC-------CeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCC--
Q 007234 78 RKKKRKLGSSLLVLGTGGGDVLALAVSA-------GQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT-- 148 (612)
Q Consensus 78 ~~~~~~~~~~~l~~gs~~g~I~vwd~~~-------~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~-- 148 (612)
+.+|++|+.||.|++||+.. .+.+..+ .+|...|.+++|+|++++|++|+.|++|++||+..
T Consensus 70 --------~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~-~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~ 140 (330)
T 2hes_X 70 --------TSLLAAGSFDSTVSIWAKEESADRTFEMDLLAII-EGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESG 140 (330)
T ss_dssp --------SSEEEEEETTSCEEEEEC-------CCCEEEEEE-C----CEEEEEECTTSCEEEEEETTSCEEEEECCTTC
T ss_pred --------CCEEEEEeCCCcEEEEEcccCcCccccceeEEEE-cCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCC
Confidence 78999999999999999853 2344333 68999999999999999999999999999999943
Q ss_pred --CceeEEEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCC--eeEEEEecCCCCEEEEEEeeC--CcEEEEEEcC
Q 007234 149 --GSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDH--KKMQKFSGHPGAVRFMTFSDN--GKYVLSSAVG 220 (612)
Q Consensus 149 --~~~~~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~--~~~~~~~~h~~~v~~l~~sp~--~~~l~s~s~~ 220 (612)
.+++..+.+|...|.+++|+|++++|++++ ++|++||..++ +++..+.+|...|.+++|+|+ +.+|++++ .
T Consensus 141 ~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s-~ 219 (330)
T 2hes_X 141 EEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGS-D 219 (330)
T ss_dssp CCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEE-T
T ss_pred CCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEe-C
Confidence 256778889999999999999999999998 89999999876 678899999999999999998 67888887 7
Q ss_pred CCeEEEEEcCCCcccc---ceeeEeecC-CceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeE
Q 007234 221 ERYIALWRTDGVKKQS---ASCVLAMEH-PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKIL 296 (612)
Q Consensus 221 d~~i~vwd~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~ 296 (612)
|++|++||+..+.... ..+...+.. +...+..+.|+ +++ +|++++.||.|++|+..+++..
T Consensus 220 D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-----~~~-~l~s~~~dg~v~iw~~~~~~~~--------- 284 (330)
T 2hes_X 220 DSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWG-----FNG-LIASVGADGVLAVYEEVDGEWK--------- 284 (330)
T ss_dssp TSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEEC-----TTS-CEEEEETTSCEEEEEEETTEEE---------
T ss_pred CCeEEEEEecCCCccccceeEEeeecccccccceEEEEEc-----CCC-EEEEEeCCCEEEEEEcCCCceE---------
Confidence 9999999987642210 112223322 44556677776 554 7999999999999996543210
Q ss_pred eecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCC-CeEEEEecC--CCceEeccccceee
Q 007234 297 SSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSG-EDINLNCSQ--DGVLLPMSQSLLKS 373 (612)
Q Consensus 297 ~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~-~v~~l~~S~--dg~~l~~s~s~d~~ 373 (612)
.. ......|.. .|.+++|+| ||.+| +|||.|++
T Consensus 285 ~~-------------------------------------------~~~~~~h~~~~v~~v~~~~~~~~~~l-as~s~Dg~ 320 (330)
T 2hes_X 285 VF-------------------------------------------AKRALCHGVYEINVVKWLELNGKTIL-ATGGDDGI 320 (330)
T ss_dssp EE-------------------------------------------EEESCTTTTSCEEEEEEC-----CCE-EEEETTSE
T ss_pred EE-------------------------------------------eccccccccceEEEEEEecCCCceEE-EEecCCCc
Confidence 00 001234555 789999999 78999 99999999
Q ss_pred ecceeee
Q 007234 374 KRGRYVQ 380 (612)
Q Consensus 374 ~~~w~~~ 380 (612)
+++|++.
T Consensus 321 v~~W~~~ 327 (330)
T 2hes_X 321 VNFWSLE 327 (330)
T ss_dssp EEEEEC-
T ss_pred EEEEEec
Confidence 9999873
No 20
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=6.9e-35 Score=295.05 Aligned_cols=240 Identities=21% Similarity=0.286 Sum_probs=215.7
Q ss_pred CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (612)
Q Consensus 2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (612)
+..+|. +++|+|++.++++++.|++|++||+.+++.+..+..+...+..+.|+++
T Consensus 79 h~~~v~--~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spd----------------------- 133 (321)
T 3ow8_A 79 HQLGVV--SVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPD----------------------- 133 (321)
T ss_dssp CSSCEE--EEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTT-----------------------
T ss_pred CCCCEE--EEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCC-----------------------
Confidence 356674 4599999999999999999999999999999998877766666666665
Q ss_pred cccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCC
Q 007234 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG 161 (612)
Q Consensus 82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~ 161 (612)
+.++++|+.+|.|++|++.+++....+ ..|...|.+++|+|++++|++|+.||.|++||+.+++.+..+.+|..+
T Consensus 134 ----g~~l~~g~~dg~v~i~~~~~~~~~~~~-~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~ 208 (321)
T 3ow8_A 134 ----SQYLATGTHVGKVNIFGVESGKKEYSL-DTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMP 208 (321)
T ss_dssp ----SSEEEEECTTSEEEEEETTTCSEEEEE-ECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC
T ss_pred ----CCEEEEEcCCCcEEEEEcCCCceeEEe-cCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCc
Confidence 889999999999999999999988666 568889999999999999999999999999999999999999999999
Q ss_pred eeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCcccccee
Q 007234 162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC 239 (612)
Q Consensus 162 v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~ 239 (612)
|.+++|+|++++|++++ +.|++||+++++....+.+|...|.+++|+|++++|++++ .|++|++||+.+++.
T Consensus 209 v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s-~D~~v~iwd~~~~~~----- 282 (321)
T 3ow8_A 209 IRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSS-SDKSVKVWDVGTRTC----- 282 (321)
T ss_dssp CCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTTEE-----
T ss_pred eeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEe-CCCcEEEEeCCCCEE-----
Confidence 99999999999999998 8999999999999999999999999999999999999998 799999999998763
Q ss_pred eEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECC
Q 007234 240 VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (612)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~ 282 (612)
+..+..+...+..+.|+ |++.+|++++.||.|++||..
T Consensus 283 ~~~~~~h~~~v~~v~~s-----~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 283 VHTFFDHQDQVWGVKYN-----GNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp EEEECCCSSCEEEEEEC-----TTSSEEEEEETTCCEEEEECC
T ss_pred EEEEcCCCCcEEEEEEC-----CCCCEEEEEeCCCeEEEEeCC
Confidence 34555555666778887 999999999999999999963
No 21
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=5.1e-36 Score=314.79 Aligned_cols=321 Identities=13% Similarity=0.130 Sum_probs=246.6
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEE
Q 007234 11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV 90 (612)
Q Consensus 11 ~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~ 90 (612)
++|+|+|++|++++.||.|++||+.+++....+..+ ...++.+++++ +.+++
T Consensus 62 ~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~--------------------~~~~~~~~~~~--------~~~l~ 113 (420)
T 3vl1_A 62 NTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA--------------------DYTAVDTAKLQ--------MRRFI 113 (420)
T ss_dssp CEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC--------------------CEEEEEEECSS--------SCEEE
T ss_pred eeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC--------------------CceEEEEEecC--------CCEEE
Confidence 399999999999999999999999877654333211 23344444444 78899
Q ss_pred EEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEEEECCC
Q 007234 91 LGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSD 170 (612)
Q Consensus 91 ~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~spd 170 (612)
+|+.+|.|++||+.+++....+ .+|...|++++|+|++++|++|+.|++|++||+.+++.+..+.+|...|.+++|+|+
T Consensus 114 ~~~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~ 192 (420)
T 3vl1_A 114 LGTTEGDIKVLDSNFNLQREID-QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDR 192 (420)
T ss_dssp EEETTSCEEEECTTSCEEEEET-TSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETT
T ss_pred EEECCCCEEEEeCCCcceeeec-ccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCC
Confidence 9999999999999998887544 689999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeC--CeEEEEEcCCCeeEEEEec---CCCCEEEEE---------------------EeeCCcEEEEEEcCCCeE
Q 007234 171 GKMLATAA--GQLKTFNCSDHKKMQKFSG---HPGAVRFMT---------------------FSDNGKYVLSSAVGERYI 224 (612)
Q Consensus 171 g~~l~~~~--g~i~lwd~~~~~~~~~~~~---h~~~v~~l~---------------------~sp~~~~l~s~s~~d~~i 224 (612)
+++|++++ |.|++||+++++.+..+.. |...|.++. |+|+++++++++ .|+.|
T Consensus 193 ~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i 271 (420)
T 3vl1_A 193 GRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGH-VSGVI 271 (420)
T ss_dssp TTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEE-TTSCE
T ss_pred CCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEc-CCCeE
Confidence 99999988 8999999999999998875 444555555 468899999987 79999
Q ss_pred EEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCc-EEEEEecCCcEEEEECCCcce-ecccCC-ceeEeeccc
Q 007234 225 ALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGL-YVLAISETGVCYIWYGQNIEE-LRNTKA-TKILSSSED 301 (612)
Q Consensus 225 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~t~s~dg~i~iwd~~~~~~-~~~~~~-~~~~~~~~~ 301 (612)
++||+.+++.. . .....+...+..+.|+ |++. +|++++.||.|++||+.+++. +..... ....+.+.
T Consensus 272 ~i~d~~~~~~~---~-~~~~~~~~~v~~~~~~-----~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~- 341 (420)
T 3vl1_A 272 TVHNVFSKEQT---I-QLPSKFTCSCNSLTVD-----GNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNV- 341 (420)
T ss_dssp EEEETTTCCEE---E-EECCTTSSCEEEEEEC-----SSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEE-
T ss_pred EEEECCCCcee---E-EcccccCCCceeEEEe-----CCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEE-
Confidence 99999987643 1 1222345566777887 8888 999999999999999988754 332221 11111111
Q ss_pred ccCCCCcccchhhhcccccceecCCCceEEEEeCCcc-----CceEEEeeccCCCeEEEEecCCCc---eEeccccceee
Q 007234 302 VNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLL-----KPSFQKILVNSGEDINLNCSQDGV---LLPMSQSLLKS 373 (612)
Q Consensus 302 ~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~-----~~~~~~~~~h~~~v~~l~~S~dg~---~l~~s~s~d~~ 373 (612)
+.++++ .+++++.|+.+++|+.. .+... ......+..|...|.+++|+|||. .+ ++.+.++.
T Consensus 342 -~~~~~~----~l~s~~~d~~v~iw~~~----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l-~a~g~~g~ 411 (420)
T 3vl1_A 342 -YFAAGA----LFVSSGFDTSIKLDIIS----DPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEV-LEVGKNNF 411 (420)
T ss_dssp -EEETTE----EEEEETTTEEEEEEEEC----CTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEE-EEEETTTE
T ss_pred -EeCCCC----EEEEecCCccEEEEecc----CCCCCccceeccCccEEccCCcceEEEEEccCCCCcceE-EEEcCCce
Confidence 234454 78888888877776521 11111 122234567888999999999999 66 44555789
Q ss_pred ecceeeec
Q 007234 374 KRGRYVQN 381 (612)
Q Consensus 374 ~~~w~~~~ 381 (612)
+++|++.+
T Consensus 412 ~~~~~~~~ 419 (420)
T 3vl1_A 412 CALYNLSN 419 (420)
T ss_dssp EEEEESCC
T ss_pred EEEEeccC
Confidence 99998754
No 22
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.5e-34 Score=292.86 Aligned_cols=295 Identities=14% Similarity=0.137 Sum_probs=234.5
Q ss_pred CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (612)
Q Consensus 2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (612)
+.++|+++ +|+|+|++|++|+.||.|+|||+.+++.+..+.+|...+.++.|+++
T Consensus 31 h~~~v~~~--~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~----------------------- 85 (369)
T 3zwl_B 31 HERPLTQV--KYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCF----------------------- 85 (369)
T ss_dssp CSSCEEEE--EECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTT-----------------------
T ss_pred eeceEEEE--EEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCC-----------------------
Confidence 56788655 99999999999999999999999999999999888777666666655
Q ss_pred cccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecC-----CcEEEEECCCCc------
Q 007234 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD-----GMVCEIDPLTGS------ 150 (612)
Q Consensus 82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~d-----g~v~iwd~~~~~------ 150 (612)
+.++++++.||.|++||+.+++.+..+. |...|.+++|+|+++++++++.+ +.|++||+..+.
T Consensus 86 ----~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~ 159 (369)
T 3zwl_B 86 ----TKYCVTGSADYSIKLWDVSNGQCVATWK--SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELT 159 (369)
T ss_dssp ----SSEEEEEETTTEEEEEETTTCCEEEEEE--CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEE
T ss_pred ----CCEEEEEeCCCeEEEEECCCCcEEEEee--cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeec
Confidence 7899999999999999999999987774 88999999999999999999998 999999987653
Q ss_pred -----eeEEEecCCC--CeeEEEECCCCCEEEEeC--CeEEEEEcCC-CeeEEEEecCCCCEEEEEEeeCCcEEEEEEcC
Q 007234 151 -----LLGKFRASTK--GISCMAVSSDGKMLATAA--GQLKTFNCSD-HKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVG 220 (612)
Q Consensus 151 -----~~~~~~~~~~--~v~~l~~spdg~~l~~~~--g~i~lwd~~~-~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~ 220 (612)
....+..+.. .+.+++|+|+++++++++ |.|++||+++ ++.+..+.+|...|.+++|+|++++|++++ .
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~ 238 (369)
T 3zwl_B 160 KVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSS-R 238 (369)
T ss_dssp EECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEE-T
T ss_pred ccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEec-C
Confidence 3444555555 899999999999999987 8999999999 788999999999999999999999999987 7
Q ss_pred CCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecc
Q 007234 221 ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSE 300 (612)
Q Consensus 221 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 300 (612)
|+.|++||+.+++.. ..+.+ ...+..+.++ |++.++++++.++...+|........
T Consensus 239 d~~i~v~d~~~~~~~-----~~~~~-~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~~------------- 294 (369)
T 3zwl_B 239 DTNSFLVDVSTLQVL-----KKYET-DCPLNTAVIT-----PLKEFIILGGGQEAKDVTTTSANEGK------------- 294 (369)
T ss_dssp TSEEEEEETTTCCEE-----EEEEC-SSCEEEEEEC-----SSSSEEEEEECCC--------------------------
T ss_pred CceEEEEECCCCcee-----eeecC-CCCceeEEec-----CCCceEEEeecCCCceEEEEecCCCc-------------
Confidence 999999999987643 33333 3345566776 99999999999985554433211100
Q ss_pred cccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceeee
Q 007234 301 DVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (612)
Q Consensus 301 ~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~~ 380 (612)
..+.+.+ .........+.+|...|.+++|+|||++| ++++.|+.+++|++.
T Consensus 295 ---------------------------~~i~~~d-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~s~~~dg~v~iw~~~ 345 (369)
T 3zwl_B 295 ---------------------------FEARFYH-KIFEEEIGRVQGHFGPLNTVAISPQGTSY-ASGGEDGFIRLHHFE 345 (369)
T ss_dssp ---------------------------CEEEEEE-TTTCCEEEEEECCSSCEEEEEECTTSSEE-EEEETTSEEEEEEEC
T ss_pred ---------------------------ceeEEEe-cCCCcchhheecccCcEEEEEECCCCCEE-EEEcCCCeEEEEECc
Confidence 0000000 01112223566788899999999999999 999999999999985
Q ss_pred c
Q 007234 381 N 381 (612)
Q Consensus 381 ~ 381 (612)
.
T Consensus 346 ~ 346 (369)
T 3zwl_B 346 K 346 (369)
T ss_dssp H
T ss_pred c
Confidence 4
No 23
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=6.9e-35 Score=295.85 Aligned_cols=320 Identities=11% Similarity=0.062 Sum_probs=251.8
Q ss_pred CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (612)
Q Consensus 2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (612)
+.++|..+ +|||||++++++..++.+.+|+...........+|...+.++.|+++
T Consensus 8 ~~~~v~~~--~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~----------------------- 62 (337)
T 1gxr_A 8 GSKPAYSF--HVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNP----------------------- 62 (337)
T ss_dssp EEEECCEE--EECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSS-----------------------
T ss_pred cCCceeEE--EECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecC-----------------------
Confidence 34577555 99999999999888777777766555444444567766666666655
Q ss_pred cccCCcEEEEEECCCcEEEEEcCCCeEEEEec----cCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCc--eeEEE
Q 007234 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLS----DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS--LLGKF 155 (612)
Q Consensus 82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~----~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~--~~~~~ 155 (612)
+.++++++ +|.|++||+.++.....+. .+|...|.+++|+|++++|++++.|+.|++||+.+++ ....+
T Consensus 63 ----~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~ 137 (337)
T 1gxr_A 63 ----TRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAEL 137 (337)
T ss_dssp ----SSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEE
T ss_pred ----CcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeec
Confidence 78899988 9999999998875322221 2689999999999999999999999999999999887 56678
Q ss_pred ecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCc
Q 007234 156 RASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (612)
Q Consensus 156 ~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~ 233 (612)
..|...+.+++|+|+++++++++ |.|++||+++++.+..+.+|...|.+++|+|+++++++++ .|+.|++||+.+++
T Consensus 138 ~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~ 216 (337)
T 1gxr_A 138 TSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGG-LDNTVRSWDLREGR 216 (337)
T ss_dssp ECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSEEEEEETTTTE
T ss_pred ccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEe-cCCcEEEEECCCCc
Confidence 88889999999999999999987 8999999999999999999999999999999999999987 79999999999876
Q ss_pred cccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchh
Q 007234 234 KQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAA 313 (612)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 313 (612)
.. ....+.. .+..+.++ |++.++++++.||.|++||+.+++.... ......+.+. .++|+++ .
T Consensus 217 ~~-----~~~~~~~-~v~~~~~s-----~~~~~l~~~~~~~~i~~~~~~~~~~~~~-~~~~~~v~~~-~~~~~~~----~ 279 (337)
T 1gxr_A 217 QL-----QQHDFTS-QIFSLGYC-----PTGEWLAVGMESSNVEVLHVNKPDKYQL-HLHESCVLSL-KFAYCGK----W 279 (337)
T ss_dssp EE-----EEEECSS-CEEEEEEC-----TTSSEEEEEETTSCEEEEETTSSCEEEE-CCCSSCEEEE-EECTTSS----E
T ss_pred eE-----eeecCCC-ceEEEEEC-----CCCCEEEEEcCCCcEEEEECCCCCeEEE-cCCccceeEE-EECCCCC----E
Confidence 43 3333433 34567776 9999999999999999999988765432 2222222222 2677777 7
Q ss_pred hhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceee
Q 007234 314 IFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (612)
Q Consensus 314 i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~ 379 (612)
+++++.++.++.|+. ...... ....|...+.+++|+|||++| ++++.|+.+++|++
T Consensus 280 l~~~~~dg~i~~~~~-------~~~~~~--~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 280 FVSTGKDNLLNAWRT-------PYGASI--FQSKESSSVLSCDISVDDKYI-VTGSGDKKATVYEV 335 (337)
T ss_dssp EEEEETTSEEEEEET-------TTCCEE--EEEECSSCEEEEEECTTSCEE-EEEETTSCEEEEEE
T ss_pred EEEecCCCcEEEEEC-------CCCeEE--EEecCCCcEEEEEECCCCCEE-EEecCCCeEEEEEE
Confidence 888888776665541 111111 234578889999999999999 99999999999986
No 24
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1e-34 Score=304.23 Aligned_cols=239 Identities=19% Similarity=0.275 Sum_probs=215.4
Q ss_pred CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (612)
Q Consensus 2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (612)
+..+|+++ +|+|+|++||+|+.||+|+|||+.+++++..+.+|...+.++.|+++
T Consensus 149 h~~~V~~v--~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~----------------------- 203 (410)
T 1vyh_C 149 HTDSVQDI--SFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPN----------------------- 203 (410)
T ss_dssp CSSCEEEE--EECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSS-----------------------
T ss_pred cCCcEEEE--EEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCC-----------------------
Confidence 45678555 99999999999999999999999999999999888877776666665
Q ss_pred cccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCC
Q 007234 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG 161 (612)
Q Consensus 82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~ 161 (612)
+.++++|+.||.|++||+.++.++..+ .+|...|.++.|+|++.+|++|+.|++|++||+.++++...+..|...
T Consensus 204 ----~~~l~s~s~D~~i~~wd~~~~~~~~~~-~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~ 278 (410)
T 1vyh_C 204 ----GDHIVSASRDKTIKMWEVQTGYCVKTF-TGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHV 278 (410)
T ss_dssp ----SSEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSC
T ss_pred ----CCEEEEEeCCCeEEEEECCCCcEEEEE-eCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCce
Confidence 789999999999999999999998776 579999999999999999999999999999999999999999999999
Q ss_pred eeEEEECCC--------------------CCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEc
Q 007234 162 ISCMAVSSD--------------------GKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV 219 (612)
Q Consensus 162 v~~l~~spd--------------------g~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~ 219 (612)
|.+++|+|+ |.++++|+ +.|++||+++++++..+.+|...|.+++|+|+|++|++++
T Consensus 279 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s- 357 (410)
T 1vyh_C 279 VECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCA- 357 (410)
T ss_dssp EEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEE-
T ss_pred EEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEe-
Confidence 999999996 67899888 8999999999999999999999999999999999999998
Q ss_pred CCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEEC
Q 007234 220 GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (612)
Q Consensus 220 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~ 281 (612)
.|+.|++||+.+++.. ..+..+...+..+.|+ |++.+|++|+.||.|++|++
T Consensus 358 ~D~~i~vwd~~~~~~~-----~~~~~h~~~v~~l~~~-----~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 358 DDKTLRVWDYKNKRCM-----KTLNAHEHFVTSLDFH-----KTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp TTTEEEEECCTTSCCC-----EEEECCSSCEEEEEEC-----SSSSCEEEEETTSEEEEEC-
T ss_pred CCCeEEEEECCCCceE-----EEEcCCCCcEEEEEEc-----CCCCEEEEEeCCCcEEEEeC
Confidence 7999999999887643 4455556667788887 99999999999999999985
No 25
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.4e-36 Score=313.32 Aligned_cols=328 Identities=11% Similarity=0.121 Sum_probs=250.4
Q ss_pred ccceeEEEEcCCCC-EEEEE----------eCCCcEEEEECCCCcE---EEEeeccCCccccccccccccccccccceeE
Q 007234 5 NIRDILTSFSPALD-YFAIC----------SGDARIKIWDTLKGQV---QTEFADIASTETTSLYGNRLEREHLSVDYTC 70 (612)
Q Consensus 5 ~V~~l~~~fspdg~-~las~----------s~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 70 (612)
+|.++ +|||+|+ +||+| +.||.|+|||+.++.. +..+ .|.. .+.+
T Consensus 14 ~v~~~--~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~------------------~v~~ 72 (416)
T 2pm9_A 14 RTATF--AWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDS------------------KFND 72 (416)
T ss_dssp ESCBC--CBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSS------------------CEEE
T ss_pred hcceE--eeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCC------------------ceEE
Confidence 56545 9999997 99999 8899999999998763 2222 1233 4556
Q ss_pred EEeeecccccccccCCcEEEEEECCCcEEEEEcCC----CeEEEEeccCCCCCeEEEEEecC-CCEEEEEecCCcEEEEE
Q 007234 71 MKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSA----GQLKWRLSDCHPGGVSAISFATH-GSCIYSAGADGMVCEID 145 (612)
Q Consensus 71 ~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~----~~~~~~~~~~h~~~V~~l~~sp~-~~~l~s~s~dg~v~iwd 145 (612)
+.|.+. +.+|++|+.+|.|++||+.+ ......+ .+|...|++++|+|+ +++|++++.|+.|++||
T Consensus 73 ~~~s~~---------~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd 142 (416)
T 2pm9_A 73 LDWSHN---------NKIIAGALDNGSLELYSTNEANNAINSMARF-SNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWD 142 (416)
T ss_dssp EEECSS---------SSCEEEEESSSCEEEECCSSTTSCCCEEEEC-CCSSSCCCEEEECSSSTTBEEEECSSSCEEBCB
T ss_pred EEECCC---------CCeEEEEccCCeEEEeecccccccccchhhc-cCCccceEEEEEcCCCCCEEEEEcCCCeEEEEE
Confidence 666443 77899999999999999988 3355444 679999999999998 89999999999999999
Q ss_pred CCCCc------eeEE---EecCCCCeeEEEECCC-CCEEEEeC--CeEEEEEcCCCeeEEEEecC------CCCEEEEEE
Q 007234 146 PLTGS------LLGK---FRASTKGISCMAVSSD-GKMLATAA--GQLKTFNCSDHKKMQKFSGH------PGAVRFMTF 207 (612)
Q Consensus 146 ~~~~~------~~~~---~~~~~~~v~~l~~spd-g~~l~~~~--g~i~lwd~~~~~~~~~~~~h------~~~v~~l~~ 207 (612)
+.+++ .... +..|...|.+++|+|+ +.++++++ |.|++||+++++.+..+..| ...|.+++|
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 222 (416)
T 2pm9_A 143 MNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEW 222 (416)
T ss_dssp TTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEE
T ss_pred CCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEE
Confidence 99886 3333 3568889999999999 78899887 89999999999999998876 789999999
Q ss_pred eeCC-cEEEEEEcCCC---eEEEEEcCCCccccceeeEeec-CCceeEEeEEecCCccCC-CCcEEEEEecCCcEEEEEC
Q 007234 208 SDNG-KYVLSSAVGER---YIALWRTDGVKKQSASCVLAME-HPAVFMDCRCIDNGGVDD-AGLYVLAISETGVCYIWYG 281 (612)
Q Consensus 208 sp~~-~~l~s~s~~d~---~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~l~t~s~dg~i~iwd~ 281 (612)
+|++ .++++++ .|+ .|++||++++... ...+. .+...+..+.|+ | ++.+|++++.||.|++||+
T Consensus 223 ~~~~~~~l~~~~-~d~~~~~i~~~d~~~~~~~----~~~~~~~~~~~v~~~~~s-----~~~~~~l~s~~~dg~v~~wd~ 292 (416)
T 2pm9_A 223 HPKNSTRVATAT-GSDNDPSILIWDLRNANTP----LQTLNQGHQKGILSLDWC-----HQDEHLLLSSGRDNTVLLWNP 292 (416)
T ss_dssp CSSCTTEEEEEE-CCSSSCCCCEEETTSTTSC----SBCCCSCCSSCEEEEEEC-----SSCSSCEEEEESSSEEEEECS
T ss_pred CCCCCCEEEEEE-CCCCCceEEEEeCCCCCCC----cEEeecCccCceeEEEeC-----CCCCCeEEEEeCCCCEEEeeC
Confidence 9997 5777776 688 9999999986422 22333 344556677787 7 8999999999999999999
Q ss_pred CCcceecccCCceeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCc------------------------
Q 007234 282 QNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLL------------------------ 337 (612)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~------------------------ 337 (612)
.+++.+.........+.+.. ++|++.. .+++++.|+.+++|+..-.......
T Consensus 293 ~~~~~~~~~~~~~~~v~~~~-~s~~~~~---~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (416)
T 2pm9_A 293 ESAEQLSQFPARGNWCFKTK-FAPEAPD---LFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESK 368 (416)
T ss_dssp SSCCEEEEEECSSSCCCCEE-ECTTCTT---EEEECCSSSEEEEEESCCCCCSSCC----------------------CC
T ss_pred CCCccceeecCCCCceEEEE-ECCCCCC---EEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccc
Confidence 99988776655444343333 7787732 8899999888777652211000000
Q ss_pred ----cCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceee
Q 007234 338 ----LKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (612)
Q Consensus 338 ----~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~ 379 (612)
...+ .....|...+.+++|||||++| ++++.|+++++|++
T Consensus 369 ~~~~~~~~-~~~~~~~~~~~~~~~s~dg~~l-a~~~~d~~v~~w~~ 412 (416)
T 2pm9_A 369 EKPSVFHL-QAPTWYGEPSPAAHWAFGGKLV-QITPDGKGVSITNP 412 (416)
T ss_dssp SCCCSSCC-CCCSTTCCCSCCCEEETTTEEE-CBCTTSSCBCCBCC
T ss_pred cccccccc-cCCccccCCccceEEeeCCeEE-EEeCCCCeEEEEEe
Confidence 0001 1112266678899999999999 99999999999987
No 26
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.5e-33 Score=286.67 Aligned_cols=289 Identities=17% Similarity=0.222 Sum_probs=233.1
Q ss_pred CCcccceeEEEEcCC-CCEEEEEeCCCcEEEEECCCCc-----EEEEeeccCCccccccccccccccccccceeEEEeee
Q 007234 2 GSSNIRDILTSFSPA-LDYFAICSGDARIKIWDTLKGQ-----VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLS 75 (612)
Q Consensus 2 ~s~~V~~l~~~fspd-g~~las~s~dg~i~iwd~~~~~-----~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~ 75 (612)
|+++|+++ +|+|+ +++||+||.||+|+|||+.+++ ....+.+|...+.++.|+++
T Consensus 37 H~~~V~~v--~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~d----------------- 97 (340)
T 4aow_A 37 HNGWVTQI--ATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSD----------------- 97 (340)
T ss_dssp CSSCEEEE--EECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTT-----------------
T ss_pred ccCCEEEE--EEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCC-----------------
Confidence 57889666 99998 6899999999999999987654 45667777777666666665
Q ss_pred cccccccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeE-E
Q 007234 76 VDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLG-K 154 (612)
Q Consensus 76 ~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~-~ 154 (612)
+.++++|+.||.|++|+...+...... ..+...+..+.++++++.|++++.|+.+++||+....... .
T Consensus 98 ----------g~~l~s~~~d~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~ 166 (340)
T 4aow_A 98 ----------GQFALSGSWDGTLRLWDLTTGTTTRRF-VGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQ 166 (340)
T ss_dssp ----------SSEEEEEETTSEEEEEETTTTEEEEEE-ECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEEC
T ss_pred ----------CCEEEEEcccccceEEeecccceeeee-cCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEE
Confidence 889999999999999999998887665 4578889999999999999999999999999987665433 3
Q ss_pred EecCCCCeeEEEECCCC--CEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcC
Q 007234 155 FRASTKGISCMAVSSDG--KMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD 230 (612)
Q Consensus 155 ~~~~~~~v~~l~~spdg--~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~ 230 (612)
...|...+.+++|++++ .++++++ +.|++||+++++.+..+.+|.++|++++|+|++++|++++ .|+.|++||+.
T Consensus 167 ~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s-~Dg~i~iwd~~ 245 (340)
T 4aow_A 167 DESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGG-KDGQAMLWDLN 245 (340)
T ss_dssp SSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTCEEEEEETT
T ss_pred eccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEe-CCCeEEEEEec
Confidence 55678899999999865 4666666 8999999999999999999999999999999999999998 79999999999
Q ss_pred CCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCccc
Q 007234 231 GVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSA 310 (612)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 310 (612)
+.+.. ..+.++. .+..++++ |++. +++++.|+.|++||++++..+........
T Consensus 246 ~~~~~-----~~~~~~~-~v~~~~~~-----~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~--------------- 298 (340)
T 4aow_A 246 EGKHL-----YTLDGGD-IINALCFS-----PNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVI--------------- 298 (340)
T ss_dssp TTEEE-----EEEECSS-CEEEEEEC-----SSSS-EEEEEETTEEEEEETTTTEEEEEECCC-----------------
T ss_pred cCcee-----eeecCCc-eEEeeecC-----CCCc-eeeccCCCEEEEEECCCCeEEEeccccce---------------
Confidence 87643 3444444 45667776 7765 55667799999999987765442221100
Q ss_pred chhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceeee
Q 007234 311 TAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (612)
Q Consensus 311 ~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~~ 380 (612)
......|...|.+++|+|||++| ++|+.|+.+++|++.
T Consensus 299 -------------------------------~~~~~~h~~~v~~l~~s~dg~~l-~sgs~Dg~v~iW~~~ 336 (340)
T 4aow_A 299 -------------------------------STSSKAEPPQCTSLAWSADGQTL-FAGYTDNLVRVWQVT 336 (340)
T ss_dssp ------------------------------------CCCCCEEEEEECTTSSEE-EEEETTSCEEEEEEE
T ss_pred -------------------------------eeeccCCCCCEEEEEECCCCCEE-EEEeCCCEEEEEeCC
Confidence 01234677789999999999999 999999999999984
No 27
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=8.4e-34 Score=284.82 Aligned_cols=252 Identities=13% Similarity=0.082 Sum_probs=214.3
Q ss_pred cEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCC
Q 007234 38 QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHP 117 (612)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~ 117 (612)
+...+|.+|.+.|.++.|+++ +.++++|+.||.|++||+.++..+..+ ..|.
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~---------------------------~~~l~s~~~dg~v~lWd~~~~~~~~~~-~~~~ 55 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPT---------------------------EPWVLTTLYSGRVELWNYETQVEVRSI-QVTE 55 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSS---------------------------SSEEEEEETTSEEEEEETTTTEEEEEE-ECCS
T ss_pred eeEEeecCCCCceEEEEECCC---------------------------CCEEEEEcCCCcEEEEECCCCceeEEe-eccC
Confidence 345678888888887777777 889999999999999999999988776 5799
Q ss_pred CCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCC-eeEEE
Q 007234 118 GGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDH-KKMQK 194 (612)
Q Consensus 118 ~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~-~~~~~ 194 (612)
.+|.+++|+|++++|++|+.|++|++||+.+++.+..+.+|...|.+++|+|+++++++|+ ++|++||++++ .....
T Consensus 56 ~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~ 135 (304)
T 2ynn_A 56 TPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT 135 (304)
T ss_dssp SCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEE
T ss_pred CcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhh
Confidence 9999999999999999999999999999999999999999999999999999999999998 89999999887 55678
Q ss_pred EecCCCCEEEEEEee-CCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecC
Q 007234 195 FSGHPGAVRFMTFSD-NGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET 273 (612)
Q Consensus 195 ~~~h~~~v~~l~~sp-~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~d 273 (612)
+.+|...|.+++|+| ++..|++++ .|++|++||+...... .... .++...+..+.+.+ .+++.+|++++.|
T Consensus 136 ~~~h~~~v~~v~~~p~~~~~l~sgs-~D~~v~iwd~~~~~~~---~~~~-~~~~~~v~~~~~~~---~~~~~~l~s~s~D 207 (304)
T 2ynn_A 136 FEGHEHFVMCVAFNPKDPSTFASGC-LDRTVKVWSLGQSTPN---FTLT-TGQERGVNYVDYYP---LPDKPYMITASDD 207 (304)
T ss_dssp ECCCCSCEEEEEECTTCTTEEEEEE-TTSEEEEEETTCSSCS---EEEE-CCCTTCEEEEEECC---STTCCEEEEEETT
T ss_pred hcccCCcEEEEEECCCCCCEEEEEe-CCCeEEEEECCCCCcc---ceec-cCCcCcEEEEEEEE---cCCCCEEEEEcCC
Confidence 899999999999999 678899887 7999999999876543 2222 23333445555542 1578899999999
Q ss_pred CcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeE
Q 007234 274 GVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDI 353 (612)
Q Consensus 274 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~ 353 (612)
|.|++||+++++.+. ++.+|...|.
T Consensus 208 ~~i~iWd~~~~~~~~-------------------------------------------------------~~~~h~~~v~ 232 (304)
T 2ynn_A 208 LTIKIWDYQTKSCVA-------------------------------------------------------TLEGHMSNVS 232 (304)
T ss_dssp SEEEEEETTTTEEEE-------------------------------------------------------EEECCSSCEE
T ss_pred CeEEEEeCCCCccce-------------------------------------------------------eeCCCCCCEE
Confidence 999999987654321 4557888899
Q ss_pred EEEecCCCceEeccccceeeecceeeec
Q 007234 354 NLNCSQDGVLLPMSQSLLKSKRGRYVQN 381 (612)
Q Consensus 354 ~l~~S~dg~~l~~s~s~d~~~~~w~~~~ 381 (612)
+++|+|++.+| +||+.|+++++|+...
T Consensus 233 ~~~~~p~~~~l-~s~s~Dg~i~iWd~~~ 259 (304)
T 2ynn_A 233 FAVFHPTLPII-ISGSEDGTLKIWNSST 259 (304)
T ss_dssp EEEECSSSSEE-EEEETTSCEEEEETTT
T ss_pred EEEECCCCCEE-EEEcCCCeEEEEECCC
Confidence 99999999999 9999999999999743
No 28
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=5.6e-34 Score=319.41 Aligned_cols=299 Identities=19% Similarity=0.206 Sum_probs=234.0
Q ss_pred CCcccceeEEEEcCCC-CEEEEEeCCCcEEEEECCCC-----cEEEEeeccCCccccccccccccccccccceeEEEeee
Q 007234 2 GSSNIRDILTSFSPAL-DYFAICSGDARIKIWDTLKG-----QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLS 75 (612)
Q Consensus 2 ~s~~V~~l~~~fspdg-~~las~s~dg~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~ 75 (612)
|...|+++ +|+|++ ++|++|+.||+|+|||+.++ .....+.+|...+.++.|+++
T Consensus 381 H~~~V~~v--~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~----------------- 441 (694)
T 3dm0_A 381 HTDMVTAI--ATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSD----------------- 441 (694)
T ss_dssp CSSCEEEE--ECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTT-----------------
T ss_pred CCceeEEE--EecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCC-----------------
Confidence 67788655 999975 79999999999999998763 456677888877777777666
Q ss_pred cccccccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEE
Q 007234 76 VDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKF 155 (612)
Q Consensus 76 ~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~ 155 (612)
+.++++|+.||.|++||+.++.....+ .+|...|.+++|+|++++|++|+.|++|++||..........
T Consensus 442 ----------g~~l~sgs~Dg~v~vwd~~~~~~~~~~-~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~ 510 (694)
T 3dm0_A 442 ----------GQFALSGSWDGELRLWDLAAGVSTRRF-VGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTIS 510 (694)
T ss_dssp ----------SSEEEEEETTSEEEEEETTTTEEEEEE-ECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEEC
T ss_pred ----------CCEEEEEeCCCcEEEEECCCCcceeEE-eCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeec
Confidence 889999999999999999999988776 579999999999999999999999999999998654333322
Q ss_pred ---ecCCCCeeEEEECCCC--CEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEE
Q 007234 156 ---RASTKGISCMAVSSDG--KMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWR 228 (612)
Q Consensus 156 ---~~~~~~v~~l~~spdg--~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd 228 (612)
.+|...|.+++|+|++ ..+++++ +.|++||+++++....+.+|.+.|.+++|+|++++|++++ .|+.|++||
T Consensus 511 ~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~-~Dg~i~iwd 589 (694)
T 3dm0_A 511 EGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGG-KDGVVLLWD 589 (694)
T ss_dssp SSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSBCEEEE
T ss_pred cCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCCeEEEEE
Confidence 3577789999999987 5788877 8999999999999999999999999999999999999998 799999999
Q ss_pred cCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCc
Q 007234 229 TDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQK 308 (612)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 308 (612)
+.+++.. ..+.++ ..+..++|+ |++.++++++ ++.|++||+.+++.+............ .
T Consensus 590 ~~~~~~~-----~~~~~~-~~v~~~~~s-----p~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~--------~ 649 (694)
T 3dm0_A 590 LAEGKKL-----YSLEAN-SVIHALCFS-----PNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAE--------K 649 (694)
T ss_dssp TTTTEEE-----ECCBCS-SCEEEEEEC-----SSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC-------------
T ss_pred CCCCceE-----EEecCC-CcEEEEEEc-----CCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccc--------c
Confidence 9988643 344443 346677887 8888877765 566999999998776543321100000 0
Q ss_pred ccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceeee
Q 007234 309 SATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (612)
Q Consensus 309 ~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~~ 380 (612)
....+ ......+...+.+++|||||++| +||+.|+++++|++.
T Consensus 650 --------~~~~~--------------------~~~~~~~~~~~~~l~~spdg~~l-~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 650 --------ADNSG--------------------PAATKRKVIYCTSLNWSADGSTL-FSGYTDGVIRVWGIG 692 (694)
T ss_dssp ---------------------------------------CCCCEEEEEECTTSSEE-EEEETTSEEEEEEC-
T ss_pred --------ccccc--------------------cccCCceeEEeeeEEEcCCCCEE-EEEcCCCeEEEEecc
Confidence 00000 00011222357899999999999 999999999999873
No 29
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=5.1e-34 Score=291.20 Aligned_cols=239 Identities=9% Similarity=0.059 Sum_probs=196.2
Q ss_pred cccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEe----eccCCccccccccccccccccccceeEEEeeecccc
Q 007234 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEF----ADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK 79 (612)
Q Consensus 4 ~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~----~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~ 79 (612)
++|.++ +|+||+ .|++|+.||+|+|||+.+++.+..+ .+|...|.++.|+++
T Consensus 83 ~~v~~~--~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spd--------------------- 138 (344)
T 4gqb_B 83 AGVADL--TWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSS--------------------- 138 (344)
T ss_dssp SCEEEE--EEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTT---------------------
T ss_pred CCEEEE--EEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCC---------------------
Confidence 457555 999986 6789999999999999998765443 356666666666555
Q ss_pred cccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCC-EEEEEecCCcEEEEECCCCceeEEEec-
Q 007234 80 KKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTGSLLGKFRA- 157 (612)
Q Consensus 80 ~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~-~l~s~s~dg~v~iwd~~~~~~~~~~~~- 157 (612)
+++|++|+.||.|++||+.+++++..+ .+|...|++++|+|++. .|++|+.|++|++||+++++....+..
T Consensus 139 ------g~~l~sgs~d~~i~iwd~~~~~~~~~~-~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~ 211 (344)
T 4gqb_B 139 ------GTQAVSGSKDICIKVWDLAQQVVLSSY-RAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCS 211 (344)
T ss_dssp ------SSEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC--
T ss_pred ------CCEEEEEeCCCeEEEEECCCCcEEEEE-cCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecc
Confidence 889999999999999999999998777 68999999999999885 689999999999999999998887653
Q ss_pred -CCCCeeEEEECCC-CCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCc-EEEEEEcCCCeEEEEEcCCC
Q 007234 158 -STKGISCMAVSSD-GKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGK-YVLSSAVGERYIALWRTDGV 232 (612)
Q Consensus 158 -~~~~v~~l~~spd-g~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~-~l~s~s~~d~~i~vwd~~~~ 232 (612)
+...+.+++|+|+ ++++++|+ |.|++||+++++++.++.+|...|++++|+|++. +|++++ .|++|++||+.++
T Consensus 212 ~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs-~D~~i~vwd~~~~ 290 (344)
T 4gqb_B 212 APGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLS-EDCSLAVLDSSLS 290 (344)
T ss_dssp --CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEE-TTSCEEEECTTCC
T ss_pred eeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEe-CCCeEEEEECCCC
Confidence 4457899999995 56788876 8999999999999999999999999999999984 677776 7999999999887
Q ss_pred ccccceeeEeecCCceeEEeEEecCCccCCCCc-EEEEEecCCcEEEEECCCcc
Q 007234 233 KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGL-YVLAISETGVCYIWYGQNIE 285 (612)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~t~s~dg~i~iwd~~~~~ 285 (612)
+.. ....+...+..++|+ |++. +|++++.||+|++|++.+..
T Consensus 291 ~~~------~~~~H~~~V~~v~~s-----p~~~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 291 ELF------RSQAHRDFVRDATWS-----PLNHSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp EEE------EECCCSSCEEEEEEC-----SSSTTEEEEEETTSCEEEEECCC--
T ss_pred cEE------EEcCCCCCEEEEEEe-----CCCCeEEEEEcCCCeEEEEECCCCC
Confidence 532 334455566778887 8775 67789999999999987643
No 30
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=6.3e-34 Score=293.28 Aligned_cols=317 Identities=10% Similarity=-0.005 Sum_probs=239.1
Q ss_pred CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCc--EEEEeeccCCccccccccccccccccccceeEEEeeecccc
Q 007234 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ--VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK 79 (612)
Q Consensus 2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~ 79 (612)
+.++|.++ +|+|||++||+|+.||.|++||+.+++ .+..+.+|...+.++.|+++
T Consensus 7 ~~~~i~~~--~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--------------------- 63 (372)
T 1k8k_C 7 LVEPISCH--AWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPD--------------------- 63 (372)
T ss_dssp CSSCCCEE--EECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETT---------------------
T ss_pred cCCCeEEE--EECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCC---------------------
Confidence 56788666 999999999999999999999999987 78888877766665555555
Q ss_pred cccccCCcEEEEEECCCcEEEEEcCCCeEEEEe-ccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCce---eEEE
Q 007234 80 KKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRL-SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL---LGKF 155 (612)
Q Consensus 80 ~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~-~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~---~~~~ 155 (612)
+.++++++.||.|++||+.+++..... ...|...|.+++|+|++++|++++.|+.|++||+..++. ...+
T Consensus 64 ------~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~ 137 (372)
T 1k8k_C 64 ------SNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHI 137 (372)
T ss_dssp ------TTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEE
T ss_pred ------CCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeee
Confidence 889999999999999999998754333 356899999999999999999999999999999988763 3333
Q ss_pred -ecCCCCeeEEEECCCCCEEEEeC--CeEEEEEc------------------CCCeeEEEEecCCCCEEEEEEeeCCcEE
Q 007234 156 -RASTKGISCMAVSSDGKMLATAA--GQLKTFNC------------------SDHKKMQKFSGHPGAVRFMTFSDNGKYV 214 (612)
Q Consensus 156 -~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~------------------~~~~~~~~~~~h~~~v~~l~~sp~~~~l 214 (612)
..|...|.+++|+|+++++++++ |.|++||+ .+++.+..+.+|...|.+++|+|++++|
T Consensus 138 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 217 (372)
T 1k8k_C 138 KKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRV 217 (372)
T ss_dssp CTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEE
T ss_pred ecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEE
Confidence 55778999999999999999987 89999995 4678889999999999999999999999
Q ss_pred EEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCC--cc--eeccc
Q 007234 215 LSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN--IE--ELRNT 290 (612)
Q Consensus 215 ~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~--~~--~~~~~ 290 (612)
++++ .|+.|++||+.+++.. ..+..+...+..+.|+ |++.+++++ .||.|++|++.+ ++ .+...
T Consensus 218 ~~~~-~d~~i~i~d~~~~~~~-----~~~~~~~~~v~~~~~~-----~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~ 285 (372)
T 1k8k_C 218 AWVS-HDSTVCLADADKKMAV-----ATLASETLPLLAVTFI-----TESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRL 285 (372)
T ss_dssp EEEE-TTTEEEEEEGGGTTEE-----EEEECSSCCEEEEEEE-----ETTEEEEEE-TTSSCEEEEEETTTTEEEECCCC
T ss_pred EEEe-CCCEEEEEECCCCcee-----EEEccCCCCeEEEEEe-----cCCCEEEEE-eCCeEEEEEccCcCceEEEeecc
Confidence 9988 7999999999987643 4444555566777887 899888877 999999999887 43 22211
Q ss_pred CCceeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCcc-Cce-EEEe-eccCCCeEEEEec-CCC---ce
Q 007234 291 KATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLL-KPS-FQKI-LVNSGEDINLNCS-QDG---VL 363 (612)
Q Consensus 291 ~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~-~~~-~~~~-~~h~~~v~~l~~S-~dg---~~ 363 (612)
........ .. ...+..+... ...+... .+. ...+ .+|...|.+++|. ++| .+
T Consensus 286 ~~~~~~~~--------~~-----------~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~ 344 (372)
T 1k8k_C 286 DVPKQSSQ--------RG-----------LTARERFQNL--DKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQ 344 (372)
T ss_dssp CCC---------------------------CHHHHHHHC--CCCC---------CCCSSSSSSCEEEEEEEESTTTSCSE
T ss_pred Cccccchh--------hh-----------cchhhhhhhc--ccccccccCccccccccccccCCcceeEEecCCCcceee
Confidence 11100000 00 0000000000 0000000 000 0122 3799999999855 787 99
Q ss_pred Eeccccceeeecceeeec
Q 007234 364 LPMSQSLLKSKRGRYVQN 381 (612)
Q Consensus 364 l~~s~s~d~~~~~w~~~~ 381 (612)
| +||+.|+.+++|++.+
T Consensus 345 l-~s~~~Dg~i~~W~~~~ 361 (372)
T 1k8k_C 345 F-CTTGMDGGMSIWDVRS 361 (372)
T ss_dssp E-EEEETTSEEEEEEHHH
T ss_pred E-EEecCCCceEEEEecC
Confidence 9 9999999999999843
No 31
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=8.3e-34 Score=338.71 Aligned_cols=325 Identities=14% Similarity=0.180 Sum_probs=265.2
Q ss_pred CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (612)
Q Consensus 2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (612)
+...|.+ ++|||||++||+|+.||+|+|||+.+++.+..+.+|...+.++.|+++
T Consensus 614 h~~~v~~--~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~----------------------- 668 (1249)
T 3sfz_A 614 HTDAVYH--ACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSD----------------------- 668 (1249)
T ss_dssp CSSCEEE--EEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTT-----------------------
T ss_pred ccccEEE--EEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecC-----------------------
Confidence 4567754 499999999999999999999999999999999988888877777776
Q ss_pred cccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEec--CCCEEEEEecCCcEEEEECCCCceeEEEecCC
Q 007234 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT--HGSCIYSAGADGMVCEIDPLTGSLLGKFRAST 159 (612)
Q Consensus 82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~ 159 (612)
+.++++|+.||.|++||+.+++.+..+ .+|...|.+++|+| ++..+++|+.|+.|++||+.+++++..+.+|.
T Consensus 669 ----~~~l~s~~~d~~v~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~ 743 (1249)
T 3sfz_A 669 ----DSYIATCSADKKVKIWDSATGKLVHTY-DEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHT 743 (1249)
T ss_dssp ----SSEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCS
T ss_pred ----CCEEEEEeCCCeEEEEECCCCceEEEE-cCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCC
Confidence 889999999999999999999998777 57999999999999 55689999999999999999999999999999
Q ss_pred CCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEE------------------------------------------
Q 007234 160 KGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKF------------------------------------------ 195 (612)
Q Consensus 160 ~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~------------------------------------------ 195 (612)
..|.+++|+|+++++++++ |.|++||+.+++....+
T Consensus 744 ~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~ 823 (1249)
T 3sfz_A 744 NSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLL 823 (1249)
T ss_dssp SCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEE
T ss_pred CCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEE
Confidence 9999999999999999988 89999999877554332
Q ss_pred -------------ecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCC
Q 007234 196 -------------SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDD 262 (612)
Q Consensus 196 -------------~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (612)
.+|...|.+++|+|+++++++++ .|+.|++|++.++.. ...+..+...+..+.|+ |
T Consensus 824 ~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~dg~v~vwd~~~~~~-----~~~~~~h~~~v~~v~~s-----p 892 (1249)
T 3sfz_A 824 FDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIAL-SQYCVELWNIDSRLK-----VADCRGHLSWVHGVMFS-----P 892 (1249)
T ss_dssp EETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEEC-SSSCEEEEETTTTEE-----EEEECCCSSCEEEEEEC-----T
T ss_pred EEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCce-----eeecCCCccceEEEEEC-----C
Confidence 16788899999999999999987 799999999998753 34555666677788887 9
Q ss_pred CCcEEEEEecCCcEEEEECCCcceecccCCc-------------------------------------eeEeecccccCC
Q 007234 263 AGLYVLAISETGVCYIWYGQNIEELRNTKAT-------------------------------------KILSSSEDVNSK 305 (612)
Q Consensus 263 ~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~-------------------------------------~~~~~~~~~~s~ 305 (612)
+|.++++++.||.|++|++.+.......... ...+.+ ..++|
T Consensus 893 dg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~sp 971 (1249)
T 3sfz_A 893 DGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSC-CCLSP 971 (1249)
T ss_dssp TSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEE-EEECT
T ss_pred CCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEE-EEEcC
Confidence 9999999999999999997543221110000 000111 12566
Q ss_pred CCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceeeec
Q 007234 306 SQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN 381 (612)
Q Consensus 306 ~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~~~ 381 (612)
+++ .+++|+.++.++.|+ .........+.+|...|.+++|+|||+++ ++++.|+.+++|++..
T Consensus 972 ~g~----~l~~g~~~g~i~i~d--------~~~~~~~~~~~~h~~~v~~l~~s~dg~~l-~s~~~dg~i~vwd~~~ 1034 (1249)
T 3sfz_A 972 HLE----YVAFGDEDGAIKIIE--------LPNNRVFSSGVGHKKAVRHIQFTADGKTL-ISSSEDSVIQVWNWQT 1034 (1249)
T ss_dssp TSS----EEEEEETTSCCEEEE--------TTTTSCEEECCCCSSCCCCEEECSSSSCE-EEECSSSBEEEEETTT
T ss_pred CCC----EEEEEcCCCCEEEEE--------cCCCceeeecccCCCceEEEEECCCCCEE-EEEcCCCEEEEEECCC
Confidence 666 677777766555443 22234455777899999999999999999 9999999999999754
No 32
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.6e-33 Score=321.45 Aligned_cols=265 Identities=13% Similarity=0.212 Sum_probs=224.7
Q ss_pred CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (612)
Q Consensus 2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (612)
+++.|+++ +|||||++||+|+.||.|+|||+.+++.+..+.+|...+.++.|+++
T Consensus 12 h~~~v~~i--~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~----------------------- 66 (814)
T 3mkq_A 12 RSDRVKGI--DFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIAR----------------------- 66 (814)
T ss_dssp ECSCEEEE--EECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGG-----------------------
T ss_pred CCCceEEE--EECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCC-----------------------
Confidence 45678555 99999999999999999999999999999999888777666666655
Q ss_pred cccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCC-ceeEEEecCCC
Q 007234 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG-SLLGKFRASTK 160 (612)
Q Consensus 82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~-~~~~~~~~~~~ 160 (612)
+.+|++|+.+|.|++||+.+++.+..+ .+|...|++++|+|++++|++++.||+|++||+.++ .....+..|..
T Consensus 67 ----~~~l~~~~~dg~i~vw~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~ 141 (814)
T 3mkq_A 67 ----KNWIIVGSDDFRIRVFNYNTGEKVVDF-EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEH 141 (814)
T ss_dssp ----GTEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSS
T ss_pred ----CCEEEEEeCCCeEEEEECCCCcEEEEE-ecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCC
Confidence 788999999999999999999988777 579999999999999999999999999999999887 67778888999
Q ss_pred CeeEEEECC-CCCEEEEeC--CeEEEEEcCCCeeEEEEecCC-CCEEEEEEee--CCcEEEEEEcCCCeEEEEEcCCCcc
Q 007234 161 GISCMAVSS-DGKMLATAA--GQLKTFNCSDHKKMQKFSGHP-GAVRFMTFSD--NGKYVLSSAVGERYIALWRTDGVKK 234 (612)
Q Consensus 161 ~v~~l~~sp-dg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~-~~v~~l~~sp--~~~~l~s~s~~d~~i~vwd~~~~~~ 234 (612)
.|.+++|+| ++..+++++ |.|++||+.+++....+..+. ..+.+++|+| ++.++++++ .|+.|++||+.+++.
T Consensus 142 ~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~ 220 (814)
T 3mkq_A 142 FVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITAS-DDLTIKIWDYQTKSC 220 (814)
T ss_dssp CEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEEC-TTSEEEEEETTTTEE
T ss_pred cEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEe-CCCEEEEEECCCCcE
Confidence 999999999 888999887 899999999888877776655 8899999999 999999987 799999999988763
Q ss_pred ccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCc
Q 007234 235 QSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQK 308 (612)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 308 (612)
...+..+...+..+.|+ |++.++++++.||.|++||..+++.+.........+.+.. ++|++.
T Consensus 221 -----~~~~~~~~~~v~~~~~~-----~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~-~~~~~~ 283 (814)
T 3mkq_A 221 -----VATLEGHMSNVSFAVFH-----PTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIA-THPTGR 283 (814)
T ss_dssp -----EEEEECCSSCEEEEEEC-----SSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEE-ECTTCG
T ss_pred -----EEEEcCCCCCEEEEEEc-----CCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEE-EccCCC
Confidence 34445555666778887 9999999999999999999999887766554433333222 455554
No 33
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=6.9e-34 Score=293.06 Aligned_cols=292 Identities=10% Similarity=0.027 Sum_probs=213.0
Q ss_pred ccceeEEEEcCCCCEEEEEeCCC-------cEEEEECCCCcEE----------EEeeccCCccccccccccccccccccc
Q 007234 5 NIRDILTSFSPALDYFAICSGDA-------RIKIWDTLKGQVQ----------TEFADIASTETTSLYGNRLEREHLSVD 67 (612)
Q Consensus 5 ~V~~l~~~fspdg~~las~s~dg-------~i~iwd~~~~~~~----------~~~~~~~~~~~~~~~s~~~~~~~~~~~ 67 (612)
||.++ +|+|||++||+||.|. .|++|++..+... ..+.++...+.++.+..+
T Consensus 16 PV~sv--~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~--------- 84 (365)
T 4h5i_A 16 PAYGA--KFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKG--------- 84 (365)
T ss_dssp CEEEE--EEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETT---------
T ss_pred CEEEE--EEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCC---------
Confidence 78544 9999999999998643 5999998765321 122333333332222211
Q ss_pred eeEEEeeecccccccccCCcEEEEEECCCcEEEEEcCCCeEEEEe--------ccCCCCCeEEEEEecCCCEEEEEe--c
Q 007234 68 YTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRL--------SDCHPGGVSAISFATHGSCIYSAG--A 137 (612)
Q Consensus 68 ~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~--------~~~h~~~V~~l~~sp~~~~l~s~s--~ 137 (612)
.+.+...+ ++..|+.|+.++.+++|++......... ...+...+.+++|+|||+++++|+ .
T Consensus 85 --~~~~g~~~-------~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~ 155 (365)
T 4h5i_A 85 --IILVGCNE-------NSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKV 155 (365)
T ss_dssp --EEEEECCC-------CHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCS
T ss_pred --EEEEEECC-------CccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCC
Confidence 00000000 0122333455778999998765322111 123445689999999999987554 7
Q ss_pred CCcEEEEECCCCceeEEEecCCCCeeEEEECCCCCEEEEeC-CeEEEEEcCCCeeEEE--EecCCCCEEEEEEeeCCcEE
Q 007234 138 DGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQK--FSGHPGAVRFMTFSDNGKYV 214 (612)
Q Consensus 138 dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~-g~i~lwd~~~~~~~~~--~~~h~~~v~~l~~sp~~~~l 214 (612)
|++|++||+.+++++..+. |...|.+++|+|||+++++++ +.+.+|+..+++.+.. ..+|...|.+++|+|+++++
T Consensus 156 d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l 234 (365)
T 4h5i_A 156 PAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVL 234 (365)
T ss_dssp SCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEE
T ss_pred CCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEE
Confidence 8999999999999999887 677899999999999999998 8888998888876543 35788899999999999999
Q ss_pred EEEEcCCC----eEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceeccc
Q 007234 215 LSSAVGER----YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT 290 (612)
Q Consensus 215 ~s~s~~d~----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~ 290 (612)
++++ .|+ .+++|++...... ......+..+...+.+++|+ |+|++|++|+.||.|+|||+++++.+..
T Consensus 235 ~~~s-~d~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~V~~~~~S-----pdg~~lasgs~D~~V~iwd~~~~~~~~~- 306 (365)
T 4h5i_A 235 IAAS-LKKGKGIVLTKISIKSGNTS-VLRSKQVTNRFKGITSMDVD-----MKGELAVLASNDNSIALVKLKDLSMSKI- 306 (365)
T ss_dssp EEEE-ESSSCCEEEEEEEEETTEEE-EEEEEEEESSCSCEEEEEEC-----TTSCEEEEEETTSCEEEEETTTTEEEEE-
T ss_pred EEEe-cCCcceeEEeecccccceec-ceeeeeecCCCCCeEeEEEC-----CCCCceEEEcCCCEEEEEECCCCcEEEE-
Confidence 9987 465 6888998776533 11223444555667788887 9999999999999999999987765421
Q ss_pred CCceeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccc
Q 007234 291 KATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSL 370 (612)
Q Consensus 291 ~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~ 370 (612)
-+.+|...|++++|||||++| +|||.
T Consensus 307 -----------------------------------------------------~~~gH~~~V~~v~fSpdg~~l-aS~S~ 332 (365)
T 4h5i_A 307 -----------------------------------------------------FKQAHSFAITEVTISPDSTYV-ASVSA 332 (365)
T ss_dssp -----------------------------------------------------ETTSSSSCEEEEEECTTSCEE-EEEET
T ss_pred -----------------------------------------------------ecCcccCCEEEEEECCCCCEE-EEEeC
Confidence 123688899999999999999 99999
Q ss_pred eeeecceee
Q 007234 371 LKSKRGRYV 379 (612)
Q Consensus 371 d~~~~~w~~ 379 (612)
|+++|+|++
T Consensus 333 D~tvrvw~i 341 (365)
T 4h5i_A 333 ANTIHIIKL 341 (365)
T ss_dssp TSEEEEEEC
T ss_pred CCeEEEEEc
Confidence 999999998
No 34
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=2.2e-33 Score=287.33 Aligned_cols=310 Identities=13% Similarity=0.107 Sum_probs=233.0
Q ss_pred CCcccceeEEEEcCCCCEE-EEEeC---CCcEEEEECCCCcEEEEee-ccCCccccccccccccccccccceeEEEeeec
Q 007234 2 GSSNIRDILTSFSPALDYF-AICSG---DARIKIWDTLKGQVQTEFA-DIASTETTSLYGNRLEREHLSVDYTCMKWLSV 76 (612)
Q Consensus 2 ~s~~V~~l~~~fspdg~~l-as~s~---dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~ 76 (612)
+..+|.++ +|+|++..+ ++|+. ||.|+|||+.+++...... +|...+ .++.|.+.
T Consensus 17 h~~~v~~~--~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v------------------~~~~~~~~ 76 (357)
T 3i2n_A 17 FNYTVFDC--KWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPI------------------KCGTFGAT 76 (357)
T ss_dssp CSSCEEEE--EECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCE------------------EEEECTTC
T ss_pred CCCceEEE--EEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcE------------------EEEEEcCC
Confidence 45678555 999999655 55655 8999999999988765432 344444 45555443
Q ss_pred ccccccccCCcEEEEEECCCcEEEEEcCCCe-EEEEeccCCCCCeEEEEE------ecCCCEEEEEecCCcEEEEECCCC
Q 007234 77 DRKKKRKLGSSLLVLGTGGGDVLALAVSAGQ-LKWRLSDCHPGGVSAISF------ATHGSCIYSAGADGMVCEIDPLTG 149 (612)
Q Consensus 77 ~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~-~~~~~~~~h~~~V~~l~~------sp~~~~l~s~s~dg~v~iwd~~~~ 149 (612)
.+. +.++++|+.+|.|++||+.+++ .+..+ .+|...|.++.| +|+++.|++++.||.|++||+.++
T Consensus 77 ~~~------~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~ 149 (357)
T 3i2n_A 77 SLQ------QRYLATGDFGGNLHIWNLEAPEMPVYSV-KGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQK 149 (357)
T ss_dssp CTT------TCCEEEEETTSCEEEECTTSCSSCSEEE-CCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSC
T ss_pred CCC------CceEEEecCCCeEEEEeCCCCCccEEEE-EecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCC
Confidence 211 5789999999999999999988 55555 689999999955 688999999999999999999988
Q ss_pred c-eeEEEecCCC----CeeEEE----ECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEee---CCcEEE
Q 007234 150 S-LLGKFRASTK----GISCMA----VSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSD---NGKYVL 215 (612)
Q Consensus 150 ~-~~~~~~~~~~----~v~~l~----~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp---~~~~l~ 215 (612)
+ .+..+..+.. .+.+++ |+|+++++++++ |.|++||+++++.... ..|...|.+++|+| ++.+++
T Consensus 150 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~ 228 (357)
T 3i2n_A 150 DDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLV 228 (357)
T ss_dssp SSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEE
T ss_pred CCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEE
Confidence 7 7777766554 789998 789999999987 8999999999987544 67899999999999 899999
Q ss_pred EEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCc-EEEEEecCCcEEEEECCCcceecccCCce
Q 007234 216 SSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGL-YVLAISETGVCYIWYGQNIEELRNTKATK 294 (612)
Q Consensus 216 s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~t~s~dg~i~iwd~~~~~~~~~~~~~~ 294 (612)
+++ .|+.|++||+.+++............+...+..+.|+ |++. ++++++.||.|++||+.++.......
T Consensus 229 ~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~-----~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--- 299 (357)
T 3i2n_A 229 ATS-LEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHL-----PQNRELFLTAGGAGGLHLWKYEYPIQRSKKD--- 299 (357)
T ss_dssp EEE-STTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEE-----TTEEEEEEEEETTSEEEEEEEECCSCC--CC---
T ss_pred EEC-CCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEEC-----CCCCcEEEEEeCCCcEEEeecCCCccccccc---
Confidence 987 7999999999887654211122233455566777787 8888 89999999999999987665432111
Q ss_pred eEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeee
Q 007234 295 ILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSK 374 (612)
Q Consensus 295 ~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~ 374 (612)
+++.. .- ..+ .......+..|...|.+++|+|+|++|+++++.|+.+
T Consensus 300 ----------~~g~~---~~-----------~~~---------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i 346 (357)
T 3i2n_A 300 ----------SEGIE---MG-----------VAG---------SVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTV 346 (357)
T ss_dssp ----------TTSCC---CC-----------CCC---------EEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEE
T ss_pred ----------CCCCc---cc-----------ccc---------ccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcE
Confidence 11110 00 000 1123446778999999999999999993389999999
Q ss_pred cceeeec
Q 007234 375 RGRYVQN 381 (612)
Q Consensus 375 ~~w~~~~ 381 (612)
++|++.+
T Consensus 347 ~iw~~~~ 353 (357)
T 3i2n_A 347 RVLIVTK 353 (357)
T ss_dssp EEEEECC
T ss_pred EEEECCC
Confidence 9999843
No 35
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=9.5e-33 Score=281.78 Aligned_cols=236 Identities=19% Similarity=0.293 Sum_probs=201.9
Q ss_pred CcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCc----EEEEeeccCCccccccccccccccccccceeEEEeeeccc
Q 007234 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ----VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDR 78 (612)
Q Consensus 3 s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~----~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~ 78 (612)
...| .+++|+|+|++||+|+.|+.|++||+.++. ....+.+|.+.+. ++.|.+
T Consensus 97 ~~~v--~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~------------------~~~~~~--- 153 (340)
T 1got_B 97 SSWV--MTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLS------------------CCRFLD--- 153 (340)
T ss_dssp SSCE--EEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEE------------------EEEEEE---
T ss_pred CccE--EEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEE------------------EEEECC---
Confidence 4556 455999999999999999999999998763 4555655554443 444433
Q ss_pred ccccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecC
Q 007234 79 KKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS 158 (612)
Q Consensus 79 ~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~ 158 (612)
+..+++++.||.|++||+.+++.+..+ .+|...|.+++|+|+++++++|+.|++|++||+++++++..+.+|
T Consensus 154 -------~~~l~s~s~d~~i~~wd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h 225 (340)
T 1got_B 154 -------DNQIVTSSGDTTCALWDIETGQQTTTF-TGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGH 225 (340)
T ss_dssp -------TTEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCC
T ss_pred -------CCcEEEEECCCcEEEEECCCCcEEEEE-cCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCC
Confidence 345899999999999999999988766 679999999999999999999999999999999999999999999
Q ss_pred CCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEec--CCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCcc
Q 007234 159 TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSG--HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK 234 (612)
Q Consensus 159 ~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~--h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~ 234 (612)
...|.+++|+|+++++++++ |.|++||+++++.+..+.. +...|.+++|+|+|+++++++ .|+.|++||+.+++.
T Consensus 226 ~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~-~d~~i~vwd~~~~~~ 304 (340)
T 1got_B 226 ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGY-DDFNCNVWDALKADR 304 (340)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEE-TTSEEEEEETTTCCE
T ss_pred cCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEEC-CCCeEEEEEcccCcE
Confidence 99999999999999999998 8999999999988877753 335799999999999999987 799999999988763
Q ss_pred ccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEE
Q 007234 235 QSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY 280 (612)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd 280 (612)
. ..+..+...+.++.|+ |+|.+|++++.||.|++||
T Consensus 305 ~-----~~~~~h~~~v~~~~~s-----~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 305 A-----GVLAGHDNRVSCLGVT-----DDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp E-----EEEECCSSCEEEEEEC-----TTSSCEEEEETTSCEEEEC
T ss_pred e-----eEeecCCCcEEEEEEc-----CCCCEEEEEcCCccEEecC
Confidence 3 4455566677788887 9999999999999999996
No 36
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=9e-33 Score=292.78 Aligned_cols=304 Identities=13% Similarity=0.153 Sum_probs=247.0
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEE
Q 007234 12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL 91 (612)
Q Consensus 12 ~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~ 91 (612)
+++++|++|++|+.||+|++||+.+++.+..+.+|.+.+.++.|+ +.++++
T Consensus 124 ~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~-----------------------------~~~l~s 174 (445)
T 2ovr_B 124 CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR-----------------------------DNIIIS 174 (445)
T ss_dssp EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE-----------------------------TTEEEE
T ss_pred EEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec-----------------------------CCEEEE
Confidence 577789999999999999999999999999998777655543332 458999
Q ss_pred EECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEEEECCCC
Q 007234 92 GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDG 171 (612)
Q Consensus 92 gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg 171 (612)
|+.||.|++||+.+++.+..+ .+|...|.++.|+ ++.+++|+.||+|++||+.+++.+..+.+|...+.++++ ++
T Consensus 175 ~~~dg~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~ 249 (445)
T 2ovr_B 175 GSTDRTLKVWNAETGECIHTL-YGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DG 249 (445)
T ss_dssp EETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CS
T ss_pred EeCCCeEEEEECCcCcEEEEE-CCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CC
Confidence 999999999999999998777 5799999999996 568999999999999999999999999999999999999 67
Q ss_pred CEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCcee
Q 007234 172 KMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVF 249 (612)
Q Consensus 172 ~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 249 (612)
+++++++ |.|++||+++++.+..+.+|...|.++.| ++.++++++ .|+.|++||+.+++.. ..+..+...
T Consensus 250 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~-~d~~i~i~d~~~~~~~-----~~~~~~~~~ 321 (445)
T 2ovr_B 250 RRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGS-LDTSIRVWDVETGNCI-----HTLTGHQSL 321 (445)
T ss_dssp SCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEE-TTSCEEEEETTTCCEE-----EEECCCCSC
T ss_pred CEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEe-CCCeEEEEECCCCCEE-----EEEcCCccc
Confidence 8888887 89999999999999999999999999999 788999987 7999999999988643 344444444
Q ss_pred EEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCC---ceeEeecccccCCCCcccchhhhcccccceecCC
Q 007234 250 MDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKA---TKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPA 326 (612)
Q Consensus 250 ~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~ 326 (612)
+..+.+ ++.++++++.||.|++||+.+++.+..... ....+.+.. + +++ .+++++.|+.+++|
T Consensus 322 v~~~~~-------~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~-~--~~~----~l~s~~~dg~v~iw 387 (445)
T 2ovr_B 322 TSGMEL-------KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQ-F--NKN----FVITSSDDGTVKLW 387 (445)
T ss_dssp EEEEEE-------ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEE-E--CSS----EEEEEETTSEEEEE
T ss_pred EEEEEE-------eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEE-E--CCC----EEEEEeCCCeEEEE
Confidence 444443 467999999999999999999887765543 222222222 2 233 78888888777766
Q ss_pred CceEEEEeCCccCceEEEe-----eccCCCeEEEEecCCCceEeccccceee----ecceeee
Q 007234 327 SVHTFVAYGLLLKPSFQKI-----LVNSGEDINLNCSQDGVLLPMSQSLLKS----KRGRYVQ 380 (612)
Q Consensus 327 ~~~~~~~~g~~~~~~~~~~-----~~h~~~v~~l~~S~dg~~l~~s~s~d~~----~~~w~~~ 380 (612)
+. ........+ ..|...|++++|+|+|.++ ++|+.|++ +.+|++.
T Consensus 388 d~--------~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-a~~~~dg~~~~~l~v~df~ 441 (445)
T 2ovr_B 388 DL--------KTGEFIRNLVTLESGGSGGVVWRIRASNTKLVC-AVGSRNGTEETKLLVLDFD 441 (445)
T ss_dssp ET--------TTCCEEEEEEECTTGGGTCEEEEEEECSSEEEE-EEECSSSSSCCEEEEEECC
T ss_pred EC--------CCCceeeeeeccccCCCCceEEEEEecCCEEEE-EEcccCCCCccEEEEEECC
Confidence 51 112223333 3577789999999999999 99999998 8888874
No 37
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.7e-34 Score=298.67 Aligned_cols=241 Identities=8% Similarity=0.078 Sum_probs=192.6
Q ss_pred CcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCC--cEEEEeeccCCccccccccccccccccccceeEEEeeeccccc
Q 007234 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKG--QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (612)
Q Consensus 3 s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~ 80 (612)
.++|+++ +|+|||++||+|+.||.|+|||+.++ +.+..+.+|...+.++.|+++
T Consensus 11 ~~~v~~~--~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~---------------------- 66 (377)
T 3dwl_C 11 PKPSYEH--AFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPK---------------------- 66 (377)
T ss_dssp SSCCSCC--EECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTT----------------------
T ss_pred CCcEEEE--EECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCC----------------------
Confidence 5688766 99999999999999999999999988 677778777776666666655
Q ss_pred ccccCCcEEEEEECCCcEEEEEcCCCe---EEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCc---eeEE
Q 007234 81 KRKLGSSLLVLGTGGGDVLALAVSAGQ---LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS---LLGK 154 (612)
Q Consensus 81 ~~~~~~~~l~~gs~~g~I~vwd~~~~~---~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~---~~~~ 154 (612)
+++|++|+.||.|++||+.++. ....+ .+|...|++++|+|++++|++++.|+.|++||+++++ ....
T Consensus 67 -----~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 140 (377)
T 3dwl_C 67 -----SNRIVTCSQDRNAYVYEKRPDGTWKQTLVL-LRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKH 140 (377)
T ss_dssp -----TCCEEEEETTSSEEEC------CCCCEEEC-CCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEE
T ss_pred -----CCEEEEEeCCCeEEEEEcCCCCceeeeeEe-cccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeE
Confidence 7889999999999999999887 44344 5799999999999999999999999999999999887 4777
Q ss_pred Eec-CCCCeeEEEECCCCCEEEEeC--CeEEEEEcC------------------CCeeEEEEecCCCCEEEEEEeeCCcE
Q 007234 155 FRA-STKGISCMAVSSDGKMLATAA--GQLKTFNCS------------------DHKKMQKFSGHPGAVRFMTFSDNGKY 213 (612)
Q Consensus 155 ~~~-~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~------------------~~~~~~~~~~h~~~v~~l~~sp~~~~ 213 (612)
+.. |...|.+++|+|++++|++++ |.|++||+. .++++..+ +|...|.+++|+|++++
T Consensus 141 ~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~ 219 (377)
T 3dwl_C 141 LKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNA 219 (377)
T ss_dssp ECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSC
T ss_pred eecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCE
Confidence 887 889999999999999999988 899999985 35566677 89999999999999999
Q ss_pred EEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECC
Q 007234 214 VLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (612)
Q Consensus 214 l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~ 282 (612)
|++++ .|+.|++||+.+++.. ...+..+..+...+..+.|+ |++++|++++.++.+ +|+..
T Consensus 220 l~~~~-~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~v~~~~~s-----~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 220 LAYAG-HDSSVTIAYPSAPEQP-PRALITVKLSQLPLRSLLWA-----NESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp EEEEE-TTTEEC-CEECSTTSC-EEECCCEECSSSCEEEEEEE-----ETTEEEEEESSSSEE-EECCC
T ss_pred EEEEe-CCCcEEEEECCCCCCc-ceeeEeecCCCCceEEEEEc-----CCCCEEEEEcCCcEE-EEEeC
Confidence 99987 7999999999988752 11133445555666778887 999999988776666 66654
No 38
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=5.1e-33 Score=288.40 Aligned_cols=280 Identities=12% Similarity=0.108 Sum_probs=219.8
Q ss_pred CCcccceeEEEEcCCC-CEEEEEeCCCcEEEEECCCCcEEEEee--ccCCccccccccccccccccccceeEEEeeeccc
Q 007234 2 GSSNIRDILTSFSPAL-DYFAICSGDARIKIWDTLKGQVQTEFA--DIASTETTSLYGNRLEREHLSVDYTCMKWLSVDR 78 (612)
Q Consensus 2 ~s~~V~~l~~~fspdg-~~las~s~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~ 78 (612)
+..+|+++ +|+|+| ++||+|+.||.|+|||+.+++....+. +|... +.++.|.+.+
T Consensus 72 h~~~v~~~--~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~------------------v~~~~~~~~~- 130 (383)
T 3ei3_B 72 FDRRVTSL--EWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDA------------------ITGMKFNQFN- 130 (383)
T ss_dssp CSSCEEEE--EECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCB------------------EEEEEEETTE-
T ss_pred CCCCEEEE--EECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCc------------------eeEEEeCCCC-
Confidence 35678555 999999 999999999999999999988877665 34444 4455555532
Q ss_pred ccccccCCcEEEEEECCCcEEEEEcCCCeEEEEec--cCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEe
Q 007234 79 KKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLS--DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR 156 (612)
Q Consensus 79 ~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~--~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~ 156 (612)
+.++++++.||.|++||+.+... ..+. .+|...|.+++|+|++++|++|+.|+.|++||+ +++.+..+.
T Consensus 131 -------~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~ 201 (383)
T 3ei3_B 131 -------TNQLFVSSIRGATTLRDFSGSVI-QVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEK 201 (383)
T ss_dssp -------EEEEEEEETTTEEEEEETTSCEE-EEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEE
T ss_pred -------CCEEEEEeCCCEEEEEECCCCce-EEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEec
Confidence 67899999999999999996443 3332 234588999999999999999999999999998 688889999
Q ss_pred cCCCCeeEEEECCCCC-EEEEeC--CeEEEEEcCC----CeeEEEEecCCCCEEEEEEee-CCcEEEEEEcCCCeEEEEE
Q 007234 157 ASTKGISCMAVSSDGK-MLATAA--GQLKTFNCSD----HKKMQKFSGHPGAVRFMTFSD-NGKYVLSSAVGERYIALWR 228 (612)
Q Consensus 157 ~~~~~v~~l~~spdg~-~l~~~~--g~i~lwd~~~----~~~~~~~~~h~~~v~~l~~sp-~~~~l~s~s~~d~~i~vwd 228 (612)
.|...|.+++|+|+++ ++++++ +.|++||+++ +..+..+ +|...|.+++|+| ++++|++++ .|+.|++||
T Consensus 202 ~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~-~d~~i~iwd 279 (383)
T 3ei3_B 202 LHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTD-QRNEIRVYS 279 (383)
T ss_dssp CSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEE-SSSEEEEEE
T ss_pred cCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEc-CCCcEEEEE
Confidence 9999999999999999 888887 8999999998 6666666 6999999999999 999999987 799999999
Q ss_pred cCCCccccceeeEee------c---------CCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCc
Q 007234 229 TDGVKKQSASCVLAM------E---------HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKAT 293 (612)
Q Consensus 229 ~~~~~~~~~~~~~~~------~---------~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~ 293 (612)
+.+++... .+.. . ++......+.++ |++++ +++.||.|++||+.+++.+..
T Consensus 280 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s-----~dg~~--s~s~d~~i~iwd~~~~~~~~~---- 345 (383)
T 3ei3_B 280 SYDWSKPD---QIIIHPHRQFQHLTPIKATWHPMYDLIVAGRY-----PDDQL--LLNDKRTIDIYDANSGGLVHQ---- 345 (383)
T ss_dssp TTBTTSCS---EEEECCBCCCTTSCCCCCEECSSSSEEEEECB-----CCTTT--CTTCCCCEEEEETTTCCEEEE----
T ss_pred CCCCcccc---ccccccccccccccceEEeccCCCCceEEEec-----CCccc--ccCCCCeEEEEecCCCceeee----
Confidence 98876541 1110 0 111112224444 66666 777899999999887765431
Q ss_pred eeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeec--cCCCeEEEEecCCCceEeccccce
Q 007234 294 KILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILV--NSGEDINLNCSQDGVLLPMSQSLL 371 (612)
Q Consensus 294 ~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~--h~~~v~~l~~S~dg~~l~~s~s~d 371 (612)
+.+ |...+..++|+|||++| ++|+ |
T Consensus 346 ---------------------------------------------------l~~~~~~~~~~~~~~s~~g~~l-~s~s-d 372 (383)
T 3ei3_B 346 ---------------------------------------------------LRDPNAAGIISLNKFSPTGDVL-ASGM-G 372 (383)
T ss_dssp ---------------------------------------------------ECBTTBCSCCCEEEECTTSSEE-EEEE-T
T ss_pred ---------------------------------------------------ecCCCCCceEEEEEEecCccEE-EEec-C
Confidence 111 23356667999999999 8987 8
Q ss_pred eeecceeee
Q 007234 372 KSKRGRYVQ 380 (612)
Q Consensus 372 ~~~~~w~~~ 380 (612)
+.+++|++.
T Consensus 373 ~~i~iw~~~ 381 (383)
T 3ei3_B 373 FNILIWNRE 381 (383)
T ss_dssp TEEEEEECC
T ss_pred CcEEEEecC
Confidence 999999874
No 39
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=2.4e-33 Score=287.89 Aligned_cols=297 Identities=11% Similarity=0.127 Sum_probs=234.0
Q ss_pred CCcccceeEEEEcCC----CCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecc
Q 007234 2 GSSNIRDILTSFSPA----LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVD 77 (612)
Q Consensus 2 ~s~~V~~l~~~fspd----g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~ 77 (612)
+.++|.++ +|+|+ ...+++++.++.|++||+.+++.+..+..+... .....+.++.|.+..
T Consensus 17 h~~~v~~i--~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~-------------~~~~~v~~~~~~~~~ 81 (366)
T 3k26_A 17 HNQPLFGV--QFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDA-------------DADENFYTCAWTYDS 81 (366)
T ss_dssp TCSCEEEE--EECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECS-------------CTTCCEEEEEEEECT
T ss_pred CCCceEEE--EEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeecccc-------------CCCCcEEEEEeccCC
Confidence 46788555 99994 445666666779999999999887777643321 113456778887763
Q ss_pred cccccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEec-CCCEEEEEecCCcEEEEECCCCceeEEE-
Q 007234 78 RKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKF- 155 (612)
Q Consensus 78 ~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp-~~~~l~s~s~dg~v~iwd~~~~~~~~~~- 155 (612)
.. ++.++++|+.+|.|++||+.+++.+..+ .+|...|++++|+| ++++|++|+.||.|++||+.+++.+..+
T Consensus 82 ~~-----~~~~l~~~~~dg~i~v~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 155 (366)
T 3k26_A 82 NT-----SHPLLAVAGSRGIIRIINPITMQCIKHY-VGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFG 155 (366)
T ss_dssp TT-----CCEEEEEEETTCEEEEECTTTCCEEEEE-ESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred CC-----CCCEEEEecCCCEEEEEEchhceEeeee-cCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEec
Confidence 21 1468999999999999999999988776 57999999999999 8999999999999999999999999988
Q ss_pred --ecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEe----------------------------cCCCCEE
Q 007234 156 --RASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS----------------------------GHPGAVR 203 (612)
Q Consensus 156 --~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~----------------------------~h~~~v~ 203 (612)
..|...|.+++|+|+++++++++ |.|++||+++++....+. +|...|.
T Consensus 156 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 235 (366)
T 3k26_A 156 GVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVD 235 (366)
T ss_dssp STTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCC
T ss_pred ccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEE
Confidence 67889999999999999999987 899999999876543333 3999999
Q ss_pred EEEEeeCCcEEEEEEcCCCeEEEEEcCCCcccc---------ceeeEeecCCceeEEeEEecCCccCCC--CcEEEEEec
Q 007234 204 FMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS---------ASCVLAMEHPAVFMDCRCIDNGGVDDA--GLYVLAISE 272 (612)
Q Consensus 204 ~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~t~s~ 272 (612)
+++|+ ++++++++ .|+.|++||+.+..... ...+..+..+...+..+.|+ |+ +++|++++.
T Consensus 236 ~~~~~--~~~l~~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-----~~~~~~~l~~~~~ 307 (366)
T 3k26_A 236 CVRWL--GDLILSKS-CENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFS-----MDFWQKMLALGNQ 307 (366)
T ss_dssp EEEEE--TTEEEEEC-SSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCE-----ECTTSSEEEEECT
T ss_pred EEEEc--CCEEEEEe-cCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEc-----CCCCCcEEEEEec
Confidence 99999 67888887 79999999998765310 11233344444445556665 77 999999999
Q ss_pred CCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeecc--CC
Q 007234 273 TGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVN--SG 350 (612)
Q Consensus 273 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h--~~ 350 (612)
||.|++||+.+++.... ....+..| ..
T Consensus 308 dg~i~vwd~~~~~~~~~---------------------------------------------------~~~~~~~~~~~~ 336 (366)
T 3k26_A 308 VGKLYVWDLEVEDPHKA---------------------------------------------------KCTTLTHHKCGA 336 (366)
T ss_dssp TSCEEEEECCSSSGGGC---------------------------------------------------EEEEECCTTCCS
T ss_pred CCcEEEEECCCCCCccc---------------------------------------------------cceEEcccccCC
Confidence 99999999877654210 01133344 56
Q ss_pred CeEEEEecCCCceEeccccceeeecceee
Q 007234 351 EDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (612)
Q Consensus 351 ~v~~l~~S~dg~~l~~s~s~d~~~~~w~~ 379 (612)
.|.+++|+|||++| ++++.|+.+++|++
T Consensus 337 ~v~~~~~s~~~~~l-~s~~~dg~i~iwd~ 364 (366)
T 3k26_A 337 AIRQTSFSRDSSIL-IAVCDDASIWRWDR 364 (366)
T ss_dssp CEEEEEECTTSSEE-EEEETTSEEEEEEC
T ss_pred ceEEEEeCCCCCeE-EEEeCCCEEEEEEe
Confidence 89999999999999 99999999999987
No 40
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=6.8e-33 Score=288.48 Aligned_cols=305 Identities=15% Similarity=0.136 Sum_probs=235.7
Q ss_pred CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCc------EEEEeeccCCccccccccccccccccccceeEEEeee
Q 007234 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ------VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLS 75 (612)
Q Consensus 2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~------~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~ 75 (612)
|.++|.++ +|+| ++|++|+.||.|+|||+.+++ .+..+.+|...+ .++.|.+
T Consensus 15 h~~~i~~~--~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v------------------~~~~~~~ 72 (397)
T 1sq9_A 15 HDADIFSV--SACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGL------------------HHVDVLQ 72 (397)
T ss_dssp SSSCEEEE--EECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCE------------------EEEEEEE
T ss_pred hhcCeEEE--EecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcE------------------EEEEEec
Confidence 56788655 9999 899999999999999999988 677776665544 4555554
Q ss_pred cccccccccCC---cEEEEEECCCcEEEEEcCCCeE-----EEEeccCC-----CCCeEEEEEe----cCCCE-EEEEec
Q 007234 76 VDRKKKRKLGS---SLLVLGTGGGDVLALAVSAGQL-----KWRLSDCH-----PGGVSAISFA----THGSC-IYSAGA 137 (612)
Q Consensus 76 ~~~~~~~~~~~---~~l~~gs~~g~I~vwd~~~~~~-----~~~~~~~h-----~~~V~~l~~s----p~~~~-l~s~s~ 137 (612)
... .++ .++++++.+|.|++||+.+++. ...+ ..| ...|.+++|+ |+++. |++++.
T Consensus 73 ~~~-----~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~ 146 (397)
T 1sq9_A 73 AIE-----RDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKL-DLLDSDMKKHSFWALKWGASNDRLLSHRLVATDV 146 (397)
T ss_dssp EEE-----TTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEE-CCSCTTGGGSCEEEEEEECCC----CEEEEEEET
T ss_pred ccc-----cCCccccEEEEEcCCCCEEEEEccCCcccccccceee-cccccccCCCcEEEEEEeeccCCCCceEEEEEeC
Confidence 300 004 6899999999999999998875 5555 567 5899999999 99999 999999
Q ss_pred CCcEEEEECCC------CceeE-----EEe-------cCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEec
Q 007234 138 DGMVCEIDPLT------GSLLG-----KFR-------ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSG 197 (612)
Q Consensus 138 dg~v~iwd~~~------~~~~~-----~~~-------~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~ 197 (612)
||.|++||+.+ ++.+. .+. .|...|.+++|+|++ ++++++ |.|++||+++++.+..+.+
T Consensus 147 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~ 225 (397)
T 1sq9_A 147 KGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFES 225 (397)
T ss_dssp TSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEEC
T ss_pred CCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEec
Confidence 99999999988 66666 774 377899999999999 999888 8999999999999999999
Q ss_pred ---C---CCCEEEEEEeeCCcEEEEEEcCC---CeEEEEEcCCCccccceeeEeecC-------------CceeEEeEEe
Q 007234 198 ---H---PGAVRFMTFSDNGKYVLSSAVGE---RYIALWRTDGVKKQSASCVLAMEH-------------PAVFMDCRCI 255 (612)
Q Consensus 198 ---h---~~~v~~l~~sp~~~~l~s~s~~d---~~i~vwd~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~ 255 (612)
| ...|.+++|+|++++|++++ .| +.|++||+.+++.. ..+.. +...+..+.|
T Consensus 226 ~~~h~~~~~~i~~i~~~~~~~~l~~~~-~d~~~g~i~i~d~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 299 (397)
T 1sq9_A 226 QHSMINNSNSIRSVKFSPQGSLLAIAH-DSNSFGCITLYETEFGERI-----GSLSVPTHSSQASLGEFAHSSWVMSLSF 299 (397)
T ss_dssp CC---CCCCCEEEEEECSSTTEEEEEE-EETTEEEEEEEETTTCCEE-----EEECBC--------CCBSBSSCEEEEEE
T ss_pred cccccccCCccceEEECCCCCEEEEEe-cCCCCceEEEEECCCCccc-----ceeccCcccccccccccccCCcEEEEEE
Confidence 9 99999999999999999987 68 99999999987643 33333 4556677788
Q ss_pred cCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeC
Q 007234 256 DNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYG 335 (612)
Q Consensus 256 ~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g 335 (612)
+ |++.+|++++.||.|++||+.+++.+.......... ... .+ ...|
T Consensus 300 ~-----~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~--------~~~----------~~-----------~~~g 345 (397)
T 1sq9_A 300 N-----DSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDI--------EIE----------ED-----------ILAV 345 (397)
T ss_dssp C-----SSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGC--------SSG----------GG-----------CCCB
T ss_pred C-----CCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcc--------cch----------hh-----------hhcc
Confidence 7 999999999999999999999887655332100000 000 00 0000
Q ss_pred CccCceEEEeeccCCCeEEEEecCCC----------ceEeccccceeeecceeeec
Q 007234 336 LLLKPSFQKILVNSGEDINLNCSQDG----------VLLPMSQSLLKSKRGRYVQN 381 (612)
Q Consensus 336 ~~~~~~~~~~~~h~~~v~~l~~S~dg----------~~l~~s~s~d~~~~~w~~~~ 381 (612)
.. .....|...|.+++|+||| .+| ++++.|+.+++|++.+
T Consensus 346 ~~-----~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l-~s~~~dg~i~iw~~~~ 395 (397)
T 1sq9_A 346 DE-----HGDSLAEPGVFDVKFLKKGWRSGMGADLNESL-CCVCLDRSIRWFREAG 395 (397)
T ss_dssp CT-----TSCBCSSCCEEEEEEECTTTSBSTTCTTSCEE-EEEETTTEEEEEEEEC
T ss_pred cc-----ccccccCCceeEEEeccccccccccccccceE-EEecCCCcEEEEEcCC
Confidence 00 0124568899999999999 688 9999999999999843
No 41
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=4.5e-33 Score=332.35 Aligned_cols=339 Identities=18% Similarity=0.212 Sum_probs=268.5
Q ss_pred CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (612)
Q Consensus 2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (612)
+..+|. +++|+|||++||+|+.||+|+|||+.+++.+..+.+|...+.++.|+++ ..
T Consensus 656 h~~~v~--~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~------------------~~--- 712 (1249)
T 3sfz_A 656 HEDEVL--CCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNK------------------SN--- 712 (1249)
T ss_dssp CSSCEE--EEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSS------------------SS---
T ss_pred CCCCEE--EEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecC------------------CC---
Confidence 456775 4599999999999999999999999999999999888776666655553 11
Q ss_pred cccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEe-----
Q 007234 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR----- 156 (612)
Q Consensus 82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~----- 156 (612)
+.++++|+.||.|++||+.++++...+ .+|...|++++|+|+++.+++++.||+|++||+.+++....+.
T Consensus 713 ----~~~l~sg~~d~~v~vwd~~~~~~~~~~-~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~ 787 (1249)
T 3sfz_A 713 ----HLLLATGSNDFFLKLWDLNQKECRNTM-FGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFF 787 (1249)
T ss_dssp ----CCEEEEEETTSCEEEEETTSSSEEEEE-CCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC
T ss_pred ----ceEEEEEeCCCeEEEEECCCcchhhee-cCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccc
Confidence 568999999999999999999988776 5799999999999999999999999999999988775544332
Q ss_pred --------------------------------------------------cCCCCeeEEEECCCCCEEEEeC--CeEEEE
Q 007234 157 --------------------------------------------------ASTKGISCMAVSSDGKMLATAA--GQLKTF 184 (612)
Q Consensus 157 --------------------------------------------------~~~~~v~~l~~spdg~~l~~~~--g~i~lw 184 (612)
+|...+.+++|+|+++++++++ |.|++|
T Consensus 788 ~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw 867 (1249)
T 3sfz_A 788 LSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELW 867 (1249)
T ss_dssp --------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEE
T ss_pred cccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 4567889999999999999998 899999
Q ss_pred EcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccce--------------------------
Q 007234 185 NCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS-------------------------- 238 (612)
Q Consensus 185 d~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~-------------------------- 238 (612)
|+.+++.+..+.+|...|.+++|+|+|+++++++ .|+.|++|++.+.......
T Consensus 868 d~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s-~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 946 (1249)
T 3sfz_A 868 NIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTAS-DDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGL 946 (1249)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSE
T ss_pred EcCCCceeeecCCCccceEEEEECCCCCEEEEEe-CCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcce
Confidence 9999999999999999999999999999999998 7999999997642111000
Q ss_pred eeEe------ecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccch
Q 007234 239 CVLA------MEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATA 312 (612)
Q Consensus 239 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 312 (612)
.... .......+.+++++ |++.++++++.||.|++||+.+++.+.........+.+.. ++|+++
T Consensus 947 ~~~~~~~~~~~~~~~~~i~~~~~s-----p~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~-~s~dg~---- 1016 (1249)
T 3sfz_A 947 QLIAGKTGQIDYLPEAQVSCCCLS-----PHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQ-FTADGK---- 1016 (1249)
T ss_dssp EEEEESSCCEEEECCSCEEEEEEC-----TTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEE-ECSSSS----
T ss_pred EEEecCcceEEEcccCcEEEEEEc-----CCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEE-ECCCCC----
Confidence 0000 00112235666776 9999999999999999999999887766555544444433 678877
Q ss_pred hhhcccccceecCCCc---------------------------------eEEEEeCCccCceEEEeeccCCCeEEEEecC
Q 007234 313 AIFAAKLQDIVKPASV---------------------------------HTFVAYGLLLKPSFQKILVNSGEDINLNCSQ 359 (612)
Q Consensus 313 ~i~~~~~d~~~~~~~~---------------------------------~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~ 359 (612)
.+++++.|+.++.|+. .+.+.+ .........+.+|...|.+++|+|
T Consensus 1017 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd-~~~~~~~~~~~~~~~~v~~~~~s~ 1095 (1249)
T 3sfz_A 1017 TLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWN-VITGRIERDFTCHQGTVLSCAISS 1095 (1249)
T ss_dssp CEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEE-TTTTCCCEEEECCSSCCCCEEECS
T ss_pred EEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEE-CCCCceeEEEcccCCcEEEEEECC
Confidence 7888888887766541 111111 011234456778999999999999
Q ss_pred CCceEeccccceeeecceeeec
Q 007234 360 DGVLLPMSQSLLKSKRGRYVQN 381 (612)
Q Consensus 360 dg~~l~~s~s~d~~~~~w~~~~ 381 (612)
||+++ ++++.|+++++|++..
T Consensus 1096 d~~~l-~s~s~d~~v~iwd~~~ 1116 (1249)
T 3sfz_A 1096 DATKF-SSTSADKTAKIWSFDL 1116 (1249)
T ss_dssp SSSSC-EEECCSSCCCEECSSS
T ss_pred CCCEE-EEEcCCCcEEEEECCC
Confidence 99999 9999999999998743
No 42
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=7.1e-33 Score=277.10 Aligned_cols=247 Identities=16% Similarity=0.198 Sum_probs=199.2
Q ss_pred CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCC--CcEEEEeeccCCccccccccccccccccccceeEEEeeecccc
Q 007234 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLK--GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK 79 (612)
Q Consensus 2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~ 79 (612)
|..+|+++ +|+|+|++||+|+.||+|+|||+.+ ++++.++.+|.+.|.++.|+++ .+
T Consensus 8 h~~~V~~~--~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~-----------------~~-- 66 (297)
T 2pm7_B 8 HNEMIHDA--VMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHP-----------------KF-- 66 (297)
T ss_dssp CSSCEEEE--EECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCG-----------------GG--
T ss_pred CcCceEEE--EECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCC-----------------Cc--
Confidence 56788666 9999999999999999999999974 4677888888777666555532 01
Q ss_pred cccccCCcEEEEEECCCcEEEEEcCCCe--EEEEeccCCCCCeEEEEEecC--CCEEEEEecCCcEEEEECCCCc--eeE
Q 007234 80 KKRKLGSSLLVLGTGGGDVLALAVSAGQ--LKWRLSDCHPGGVSAISFATH--GSCIYSAGADGMVCEIDPLTGS--LLG 153 (612)
Q Consensus 80 ~~~~~~~~~l~~gs~~g~I~vwd~~~~~--~~~~~~~~h~~~V~~l~~sp~--~~~l~s~s~dg~v~iwd~~~~~--~~~ 153 (612)
+.+|++|+.||+|++||+.+++ .+..+ .+|...|.+++|+|+ +.+|++|+.|++|++||++++. ...
T Consensus 67 ------g~~l~s~s~D~~v~iWd~~~~~~~~~~~~-~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~ 139 (297)
T 2pm7_B 67 ------GTILASCSYDGKVMIWKEENGRWSQIAVH-AVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPI 139 (297)
T ss_dssp ------CSEEEEEETTTEEEEEEBSSSCBCCCEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCE
T ss_pred ------CCEEEEEcCCCEEEEEEcCCCceEEEEEe-ecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeee
Confidence 6789999999999999999874 33333 579999999999997 8899999999999999998763 245
Q ss_pred EEecCCCCeeEEEECCC-------------CCEEEEeC--CeEEEEEcCCCe----eEEEEecCCCCEEEEEEeeCC---
Q 007234 154 KFRASTKGISCMAVSSD-------------GKMLATAA--GQLKTFNCSDHK----KMQKFSGHPGAVRFMTFSDNG--- 211 (612)
Q Consensus 154 ~~~~~~~~v~~l~~spd-------------g~~l~~~~--g~i~lwd~~~~~----~~~~~~~h~~~v~~l~~sp~~--- 211 (612)
.+.+|...|.+++|+|+ +++|++|+ +.|++||+++++ ....+.+|...|.+++|+|++
T Consensus 140 ~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~ 219 (297)
T 2pm7_B 140 IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLR 219 (297)
T ss_dssp EEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSS
T ss_pred eeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCc
Confidence 67889999999999997 57899887 899999998765 567889999999999999985
Q ss_pred cEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECC
Q 007234 212 KYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (612)
Q Consensus 212 ~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~ 282 (612)
.+|++++ .|++|++||+................+...+..+.|+ |+|++|++++.||.|++|+..
T Consensus 220 ~~las~s-~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s-----~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 220 SYMASVS-QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWS-----LSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp EEEEEEE-TTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEEC-----SSSCCEEEEETTSCEEEEEEC
T ss_pred eEEEEEE-CCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEEC-----CCCCEEEEEcCCCcEEEEEEC
Confidence 7888887 7999999999875321000111112234456677787 999999999999999999965
No 43
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.1e-34 Score=304.68 Aligned_cols=311 Identities=12% Similarity=-0.003 Sum_probs=212.8
Q ss_pred EEEEEeCCCcEEEEECCCCcEE----EEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEEC
Q 007234 19 YFAICSGDARIKIWDTLKGQVQ----TEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG 94 (612)
Q Consensus 19 ~las~s~dg~i~iwd~~~~~~~----~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~ 94 (612)
.||+++.|++|+|||+.++++. ..+.+|.+.+ ..+.|.|.... ...+.+|++|+.
T Consensus 175 ~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V------------------~~v~wsp~~~~---~~~~~~LAs~s~ 233 (524)
T 2j04_B 175 MFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEV------------------WDLKWHEGCHA---PHLVGCLSFVSQ 233 (524)
T ss_dssp -------CEEEEEEEEETTTCCEEEEEEEEECCCSE------------------EEEEECSSCCC---SSSSCEEEEEET
T ss_pred hhccCCCCceEEEEEccCCCCCceEEEEEEecCCcE------------------EEEEECCCCCC---CCCCceEEEEec
Confidence 3444567899999999887642 2344444433 45555543100 001578999999
Q ss_pred CCcEEEEEcCCCeEE----------EEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCc-eeEEEecCCCCee
Q 007234 95 GGDVLALAVSAGQLK----------WRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS-LLGKFRASTKGIS 163 (612)
Q Consensus 95 ~g~I~vwd~~~~~~~----------~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~-~~~~~~~~~~~v~ 163 (612)
||+|++||+.++... .....+|...|++++|+|++ .|++|+.||+|++||+++++ +...+.+|...|.
T Consensus 234 DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~ 312 (524)
T 2j04_B 234 EGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYIL 312 (524)
T ss_dssp TSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEE
T ss_pred CCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEeecccccEE
Confidence 999999999876421 01235799999999999864 89999999999999999774 4567889999999
Q ss_pred EE--EECCCC-CEEEEeC--CeEEEEEcCCCeeEEEEecCCC--CEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCcccc
Q 007234 164 CM--AVSSDG-KMLATAA--GQLKTFNCSDHKKMQKFSGHPG--AVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS 236 (612)
Q Consensus 164 ~l--~~spdg-~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~--~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~ 236 (612)
++ .|+|+| .+|++++ ++|++||++++++...+.+|.. .|.+++|+|+++.+++++ .|++|++||++++...
T Consensus 313 sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~-~d~tv~lwd~~~~~~~- 390 (524)
T 2j04_B 313 SVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSD-GASSLRAVPSRAAFAV- 390 (524)
T ss_dssp EEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEEC-SSSEEEEEETTCTTCC-
T ss_pred EEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeC-CCCcEEEEECcccccc-
Confidence 99 578888 8999988 8999999999888777777764 588999999999988887 7999999999987643
Q ss_pred ceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCce-----eEeecccccCCCCcccc
Q 007234 237 ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATK-----ILSSSEDVNSKSQKSAT 311 (612)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~~ 311 (612)
..+..+...+..++|+ |+|.+|++|+.||+|++||.... .+..+.... ..+-.. .++|+++
T Consensus 391 ----~~l~gH~~~V~sva~S-----p~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v-~~sp~g~--- 456 (524)
T 2j04_B 391 ----HPLVSRETTITAIGVS-----RLHPMVLAGSADGSLIITNAARR-LLHGIKNSSATQKSLRLWKW-DYSIKDD--- 456 (524)
T ss_dssp ----EEEEECSSCEEEEECC-----SSCCBCEEEETTTEEECCBSCSS-TTTCC------CCCCEEEEC-BCCSSSC---
T ss_pred ----eeeecCCCceEEEEeC-----CCCCeEEEEECCCEEEEEechHh-hccccccCccceeeeEEEEe-ccCCCCC---
Confidence 2333455566777887 99999999999999999998654 333222110 011111 2566554
Q ss_pred hhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCc---eEeccccceeeecceee
Q 007234 312 AAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGV---LLPMSQSLLKSKRGRYV 379 (612)
Q Consensus 312 ~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~---~l~~s~s~d~~~~~w~~ 379 (612)
.+.. ....+++. +.. ......++.+|...|.+++|+|++. ++ ++|+.|+.+|+|++
T Consensus 457 -~~~~---~~~~~~~~---~~~----~g~~~~~l~gh~~~V~~Vafsp~~~~~~~l-Asg~~~g~vrlw~l 515 (524)
T 2j04_B 457 -KYRI---DSSYEVYP---LTV----NDVSKAKIDAHGINITCTKWNETSAGGKCY-AFSNSAGLLTLEYL 515 (524)
T ss_dssp -EEEE---CCCCCCCC--------------------CCCSCCCEEECCSTTTTTEE-EEECTTSEEEEEEC
T ss_pred -eEEc---cCCceecc---ccc----CCcceeeecCCCceEEEEECCCCCCccHHH-HhhccCceEEEEEc
Confidence 1111 11111111 000 1123446778999999999999964 88 99999999999987
No 44
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-32 Score=315.82 Aligned_cols=339 Identities=9% Similarity=0.042 Sum_probs=240.2
Q ss_pred CcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccc
Q 007234 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (612)
Q Consensus 3 s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (612)
..+|+.+ +|+| |++|++++.|++|+|||+.+++++..+. +...+.++.|+++
T Consensus 58 ~~~V~~l--~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~-~~~~V~~v~~sp~------------------------ 109 (902)
T 2oaj_A 58 RSAIKEM--RFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF-VPGKITSIDTDAS------------------------ 109 (902)
T ss_dssp CCCEEEE--EEET-TTEEEEEETTCEEEEEETTTCSEEEEEE-CSSCEEEEECCTT------------------------
T ss_pred CCCEEEE--EEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc-CCCCEEEEEECCC------------------------
Confidence 4578655 9999 8899999999999999999999988885 4444555555444
Q ss_pred ccCCcEEEEEECCCcEEEEEcCCCeEEE----------EeccCCCCCeEEEEEecC-CCEEEEEecCCcEEEEECCCCce
Q 007234 83 KLGSSLLVLGTGGGDVLALAVSAGQLKW----------RLSDCHPGGVSAISFATH-GSCIYSAGADGMVCEIDPLTGSL 151 (612)
Q Consensus 83 ~~~~~~l~~gs~~g~I~vwd~~~~~~~~----------~~~~~h~~~V~~l~~sp~-~~~l~s~s~dg~v~iwd~~~~~~ 151 (612)
+.++++|+.||.|++||+.++.... ....+|.+.|++++|+|+ +..+++|+.||.| +||++++++
T Consensus 110 ---g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~ 185 (902)
T 2oaj_A 110 ---LDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEI 185 (902)
T ss_dssp ---CSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEE
T ss_pred ---CCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCce
Confidence 8899999999999999999987641 123679999999999995 4689999999999 999999999
Q ss_pred eEEEecC------------------CCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEE--E---ec---------
Q 007234 152 LGKFRAS------------------TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQK--F---SG--------- 197 (612)
Q Consensus 152 ~~~~~~~------------------~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~--~---~~--------- 197 (612)
+..+..| ...|.+++|+|+|++|++++ |.|++||+++++++.. + .+
T Consensus 186 ~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~ 265 (902)
T 2oaj_A 186 KQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIR 265 (902)
T ss_dssp EEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCC
T ss_pred EEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCC
Confidence 9888765 46799999999999999998 8999999999987653 2 12
Q ss_pred ----CCCCEEEEEEee----CC-cEEEEEEcCC-----CeEEEEEcCC------------------Ccccc---------
Q 007234 198 ----HPGAVRFMTFSD----NG-KYVLSSAVGE-----RYIALWRTDG------------------VKKQS--------- 236 (612)
Q Consensus 198 ----h~~~v~~l~~sp----~~-~~l~s~s~~d-----~~i~vwd~~~------------------~~~~~--------- 236 (612)
|..+|.+++|++ ++ ..+++++ .| +.+.+|++.. .+...
T Consensus 266 ~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~-~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 344 (902)
T 2oaj_A 266 DSSTNAAKISKVYWMCENNPEYTSLLISHK-SISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVP 344 (902)
T ss_dssp CCSSCCCEEEEEEEEECSSTTEEEEEEEEE-CSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSC
T ss_pred CCccccCCeeEEEEEecCCCCCCEEEEeCC-CCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCc
Confidence 345799999965 33 3455554 34 2677777310 00000
Q ss_pred -------------------c-----------eeeEeec----------------CCceeEEeEEec--------------
Q 007234 237 -------------------A-----------SCVLAME----------------HPAVFMDCRCID-------------- 256 (612)
Q Consensus 237 -------------------~-----------~~~~~~~----------------~~~~~~~~~~~~-------------- 256 (612)
. ..++.+. .+...+.++.++
T Consensus 345 v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~ 424 (902)
T 2oaj_A 345 IVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAA 424 (902)
T ss_dssp EEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTT
T ss_pred eEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcc
Confidence 0 0000000 000111122221
Q ss_pred ---------------CCccCCCCcEEEEEecCCcEEEEECCCcceecc--cC---------CceeEeecccccCCCCccc
Q 007234 257 ---------------NGGVDDAGLYVLAISETGVCYIWYGQNIEELRN--TK---------ATKILSSSEDVNSKSQKSA 310 (612)
Q Consensus 257 ---------------~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~--~~---------~~~~~~~~~~~~s~~~~~~ 310 (612)
...++|++++|++|+.||+|++||+.++..... .. .....+.+.. |+|+++
T Consensus 425 ~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~sva-fspdg~-- 501 (902)
T 2oaj_A 425 QNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKIS-FAAETL-- 501 (902)
T ss_dssp BCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEE-EETTTT--
T ss_pred cCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEE-ecCCCC--
Confidence 012358899999999999999999988743210 00 1122233333 889998
Q ss_pred chhhhcccccceecCCCceEEEEeCC-----------------c-----------------c---CceEEEeeccCCCeE
Q 007234 311 TAAIFAAKLQDIVKPASVHTFVAYGL-----------------L-----------------L---KPSFQKILVNSGEDI 353 (612)
Q Consensus 311 ~~~i~~~~~d~~~~~~~~~~~~~~g~-----------------~-----------------~---~~~~~~~~~h~~~v~ 353 (612)
.+++|+.|+.+++|+-.-...++. . . ......+.+|.+.|+
T Consensus 502 --~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~ 579 (902)
T 2oaj_A 502 --ELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTS 579 (902)
T ss_dssp --EEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEE
T ss_pred --eEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEE
Confidence 899999999888887321100000 0 0 022456778999999
Q ss_pred EEEecCCCceEeccccceeeecceeeec
Q 007234 354 NLNCSQDGVLLPMSQSLLKSKRGRYVQN 381 (612)
Q Consensus 354 ~l~~S~dg~~l~~s~s~d~~~~~w~~~~ 381 (612)
+++||||| +| ++|+.|+++++|++..
T Consensus 580 svafSpdG-~l-Asgs~D~tv~lwd~~~ 605 (902)
T 2oaj_A 580 AINNSNIG-FV-GIAYAAGSLMLIDRRG 605 (902)
T ss_dssp EEEECBTS-EE-EEEETTSEEEEEETTT
T ss_pred EEEecCCc-EE-EEEeCCCcEEEEECCC
Confidence 99999999 88 9999999999999754
No 45
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=7.2e-32 Score=272.70 Aligned_cols=241 Identities=20% Similarity=0.243 Sum_probs=204.1
Q ss_pred CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (612)
Q Consensus 2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (612)
+..+|+++ +|+|||++|++|+.||+|+|||+.+++.+..+.+|...+.++.|+++
T Consensus 64 h~~~v~~~--~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~----------------------- 118 (319)
T 3frx_A 64 HSHIVQDC--TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKK----------------------- 118 (319)
T ss_dssp CSSCEEEE--EECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTT-----------------------
T ss_pred CcccEEEE--EECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCC-----------------------
Confidence 45677555 99999999999999999999999999999999988887777777666
Q ss_pred cccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecC------CCEEEEEecCCcEEEEECCCCceeEEE
Q 007234 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATH------GSCIYSAGADGMVCEIDPLTGSLLGKF 155 (612)
Q Consensus 82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~------~~~l~s~s~dg~v~iwd~~~~~~~~~~ 155 (612)
+.++++|+.||.|++||+.. .++..+ .+|...|.++.|+|. +..+++++.|++|++||+.+++....+
T Consensus 119 ----~~~l~s~s~D~~i~vwd~~~-~~~~~~-~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~ 192 (319)
T 3frx_A 119 ----ASMIISGSRDKTIKVWTIKG-QCLATL-LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF 192 (319)
T ss_dssp ----SCEEEEEETTSCEEEEETTS-CEEEEE-CCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred ----CCEEEEEeCCCeEEEEECCC-CeEEEE-eccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheee
Confidence 88999999999999999974 445455 579999999999985 448999999999999999999999999
Q ss_pred ecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCc
Q 007234 156 RASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (612)
Q Consensus 156 ~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~ 233 (612)
.+|...|.+++|+|+|++|++++ |.|++||+.+++.+..+.. ..+|.+++|+|++.++++++ ++.+++|++....
T Consensus 193 ~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~la~~~--~~~i~v~~~~~~~ 269 (319)
T 3frx_A 193 IGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA-QDEVFSLAFSPNRYWLAAAT--ATGIKVFSLDPQY 269 (319)
T ss_dssp CCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC-CSCEEEEEECSSSSEEEEEE--TTEEEEEEETTEE
T ss_pred cCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecC-CCcEEEEEEcCCCCEEEEEc--CCCcEEEEeCcCe
Confidence 99999999999999999999988 8999999999999998875 46899999999999988775 5569999998764
Q ss_pred cccceeeEe------ecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCc
Q 007234 234 KQSASCVLA------MEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (612)
Q Consensus 234 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~ 284 (612)
... ... ...+...+..++|+ |||++|++|+.||.|++||+.++
T Consensus 270 ~~~---~~~~~~~~~~~~~~~~v~~~~~s-----pdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 270 LVD---DLRPEFAGYSKAAEPHAVSLAWS-----ADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EEE---EECCCCTTCCGGGCCCEEEEEEC-----TTSSEEEEEETTSCEEEEEEEEC
T ss_pred eee---ccCccccccccCcCcceeEEEEC-----CCCCEEEEeecCceEEEEEEeec
Confidence 321 010 01122334567787 99999999999999999998764
No 46
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=4.8e-32 Score=282.33 Aligned_cols=239 Identities=20% Similarity=0.275 Sum_probs=203.3
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEE
Q 007234 10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (612)
Q Consensus 10 ~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (612)
+++|+|||++||+|+.||+|+|||+.+++.+..+.+|...+.++.|+++ +.++
T Consensus 128 ~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~---------------------------~~~l 180 (393)
T 1erj_A 128 SVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPS---------------------------GDKL 180 (393)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTT---------------------------SSEE
T ss_pred EEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCC---------------------------CCEE
Confidence 4599999999999999999999999999999999888877776666665 7889
Q ss_pred EEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEec-CCCEEEEEecCCcEEEEECCCCceeEEE-------ecCCCC
Q 007234 90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKF-------RASTKG 161 (612)
Q Consensus 90 ~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp-~~~~l~s~s~dg~v~iwd~~~~~~~~~~-------~~~~~~ 161 (612)
++|+.||.|++||+.++++...+. +...+.+++|+| ++++|++|+.|+.|++||+.+++.+..+ .+|...
T Consensus 181 ~s~s~d~~v~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~ 258 (393)
T 1erj_A 181 VSGSGDRTVRIWDLRTGQCSLTLS--IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDS 258 (393)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEE--CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSC
T ss_pred EEecCCCcEEEEECCCCeeEEEEE--cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCC
Confidence 999999999999999999876663 667899999999 8999999999999999999999888776 567889
Q ss_pred eeEEEECCCCCEEEEeC--CeEEEEEcCCC------------eeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEE
Q 007234 162 ISCMAVSSDGKMLATAA--GQLKTFNCSDH------------KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALW 227 (612)
Q Consensus 162 v~~l~~spdg~~l~~~~--g~i~lwd~~~~------------~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vw 227 (612)
|.+++|+|+|++|++++ |.|++||+++. .+...+.+|...|.+++|+|++.+|++++ .|+.|++|
T Consensus 259 v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs-~D~~v~iw 337 (393)
T 1erj_A 259 VYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGS-KDRGVLFW 337 (393)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEE-TTSEEEEE
T ss_pred EEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEe-CCCeEEEE
Confidence 99999999999999998 89999999753 34567889999999999999999999988 79999999
Q ss_pred EcCCCccccceeeEeecCCceeEEeEEecC-CccCCCCcEEEEEecCCcEEEEECCC
Q 007234 228 RTDGVKKQSASCVLAMEHPAVFMDCRCIDN-GGVDDAGLYVLAISETGVCYIWYGQN 283 (612)
Q Consensus 228 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~t~s~dg~i~iwd~~~ 283 (612)
|+.+++.. ..+..+...+..+.+++ ..++|++.+|++|+.||.|++|++..
T Consensus 338 d~~~~~~~-----~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 338 DKKSGNPL-----LMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp ETTTCCEE-----EEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred ECCCCeEE-----EEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 99988643 34444444555565652 23446899999999999999999754
No 47
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-32 Score=314.93 Aligned_cols=197 Identities=14% Similarity=0.130 Sum_probs=166.5
Q ss_pred CcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccc
Q 007234 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (612)
Q Consensus 3 s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (612)
.++|+++ +|+|+|++||+|+.||+|+|||..+++....+. |.. .+.++.|.+
T Consensus 17 ~~~V~~l--afspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~-~~~------------------~V~~l~fsp------- 68 (902)
T 2oaj_A 17 SSKPIAA--AFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLE-DRS------------------AIKEMRFVK------- 68 (902)
T ss_dssp SSCEEEE--EEETTTTEEEEEETTSEEEEECSTTCEEEEECS-SCC------------------CEEEEEEET-------
T ss_pred CCCcEEE--EECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcC-CCC------------------CEEEEEEcC-------
Confidence 5678555 999999999999999999999998877665442 222 455666665
Q ss_pred ccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCcee----------
Q 007234 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLL---------- 152 (612)
Q Consensus 83 ~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~---------- 152 (612)
+.+|++++.|+.|++||+.+++++..+. |...|++++|+|+++++++|+.||+|++||+.+++..
T Consensus 69 ---g~~L~S~s~D~~v~lWd~~~~~~~~~~~--~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~ 143 (902)
T 2oaj_A 69 ---GIYLVVINAKDTVYVLSLYSQKVLTTVF--VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKS 143 (902)
T ss_dssp ---TTEEEEEETTCEEEEEETTTCSEEEEEE--CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHH
T ss_pred ---CCEEEEEECcCeEEEEECCCCcEEEEEc--CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceecccccc
Confidence 3489999999999999999999887773 7789999999999999999999999999999988764
Q ss_pred -EEEecCCCCeeEEEECCC-CCEEEEeC--CeEEEEEcCCCeeEEEEecC------------------CCCEEEEEEeeC
Q 007234 153 -GKFRASTKGISCMAVSSD-GKMLATAA--GQLKTFNCSDHKKMQKFSGH------------------PGAVRFMTFSDN 210 (612)
Q Consensus 153 -~~~~~~~~~v~~l~~spd-g~~l~~~~--g~i~lwd~~~~~~~~~~~~h------------------~~~v~~l~~sp~ 210 (612)
..+.+|..+|.+++|+|+ +..+++|+ |.| +||+++++.+..+.+| ...|.+++|+|+
T Consensus 144 ~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspd 222 (902)
T 2oaj_A 144 SFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPN 222 (902)
T ss_dssp HTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTT
T ss_pred ccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCC
Confidence 223567889999999996 46788877 899 9999999999888766 577999999999
Q ss_pred CcEEEEEEcCCCeEEEEEcCCCcc
Q 007234 211 GKYVLSSAVGERYIALWRTDGVKK 234 (612)
Q Consensus 211 ~~~l~s~s~~d~~i~vwd~~~~~~ 234 (612)
|++|++++ .|+.|++||+.+++.
T Consensus 223 g~~lasgs-~Dg~i~lWd~~~g~~ 245 (902)
T 2oaj_A 223 SLHIITIH-EDNSLVFWDANSGHM 245 (902)
T ss_dssp SSEEEEEE-TTCCEEEEETTTCCE
T ss_pred CCEEEEEE-CCCeEEEEECCCCcE
Confidence 99999998 799999999987653
No 48
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=4e-32 Score=299.30 Aligned_cols=328 Identities=12% Similarity=0.132 Sum_probs=253.3
Q ss_pred Ccc-cceeEEEEcC--CCCEEEEEeCCCcEEEEECCCC--------cEEEEeeccCCccccccccccccccccccceeEE
Q 007234 3 SSN-IRDILTSFSP--ALDYFAICSGDARIKIWDTLKG--------QVQTEFADIASTETTSLYGNRLEREHLSVDYTCM 71 (612)
Q Consensus 3 s~~-V~~l~~~fsp--dg~~las~s~dg~i~iwd~~~~--------~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 71 (612)
..+ |.++ +|+| ||++||+|+.||.|+|||+.++ +....+..|...+.++.|+++
T Consensus 63 ~~~~v~~~--~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~------------- 127 (615)
T 1pgu_A 63 GSSVVTTV--KFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFE------------- 127 (615)
T ss_dssp TTSCEEEE--EECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTT-------------
T ss_pred CCceEEEE--EECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCC-------------
Confidence 456 7555 9999 9999999999999999999855 667777777766666666655
Q ss_pred EeeecccccccccCCcEEEEEECC----CcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCC-EEEEEecCCcEEEEEC
Q 007234 72 KWLSVDRKKKRKLGSSLLVLGTGG----GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDP 146 (612)
Q Consensus 72 ~w~~~~~~~~~~~~~~~l~~gs~~----g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~-~l~s~s~dg~v~iwd~ 146 (612)
+.++++++.+ +.|.+|| .++.+..+ .+|...|++++|+|+++ .+++++.|+.|++||+
T Consensus 128 --------------~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~ 190 (615)
T 1pgu_A 128 --------------GRRLCVVGEGRDNFGVFISWD--SGNSLGEV-SGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQG 190 (615)
T ss_dssp --------------SSEEEEEECCSSCSEEEEETT--TCCEEEEC-CSCSSCEEEEEECSSSSCEEEEEETTTEEEEEET
T ss_pred --------------CCEEEEeccCCCCccEEEEEE--CCCcceee-ecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeC
Confidence 7889999887 6788888 56666555 67999999999999998 7999999999999999
Q ss_pred CCCceeEEEecCCC---CeeEEEECCC-CCEEEEeC--CeEEEEEcCCCeeEEEE-e---cCCCCEEEEEEeeCCcEEEE
Q 007234 147 LTGSLLGKFRASTK---GISCMAVSSD-GKMLATAA--GQLKTFNCSDHKKMQKF-S---GHPGAVRFMTFSDNGKYVLS 216 (612)
Q Consensus 147 ~~~~~~~~~~~~~~---~v~~l~~spd-g~~l~~~~--g~i~lwd~~~~~~~~~~-~---~h~~~v~~l~~sp~~~~l~s 216 (612)
.+++.+..+..|.. .|.+++|+|+ ++++++++ |.|++||+++++.+..+ . +|..+|.+++|+ +++++++
T Consensus 191 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~ 269 (615)
T 1pgu_A 191 PPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFAT 269 (615)
T ss_dssp TTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEE
T ss_pred CCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEE
Confidence 99999999999998 9999999999 99999887 89999999999999999 6 899999999999 9999999
Q ss_pred EEcCCCeEEEEEcCCCccccceeeEeecCC----ceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCC
Q 007234 217 SAVGERYIALWRTDGVKKQSASCVLAMEHP----AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKA 292 (612)
Q Consensus 217 ~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~ 292 (612)
++ .|+.|++||+.+++.. ..+..+ ...+..+.+ +++.++++++.||.|++||+.+++.+.....
T Consensus 270 ~~-~d~~i~~wd~~~~~~~-----~~~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~ 337 (615)
T 1pgu_A 270 VG-ADATIRVWDVTTSKCV-----QKWTLDKQQLGNQQVGVVA------TGNGRIISLSLDGTLNFYELGHDEVLKTISG 337 (615)
T ss_dssp EE-TTSEEEEEETTTTEEE-----EEEECCTTCGGGCEEEEEE------EETTEEEEEETTSCEEEEETTEEEEEEEECC
T ss_pred Ec-CCCcEEEEECCCCcEE-----EEEcCCCCcccCceeEEEe------CCCCeEEEEECCCCEEEEECCCCcEEEEEeC
Confidence 88 7999999999987643 233322 233334444 4778999999999999999998776655443
Q ss_pred ceeEeeccc--------------------------------ccCCCCcccchhhhcccccceecCCCceE----------
Q 007234 293 TKILSSSED--------------------------------VNSKSQKSATAAIFAAKLQDIVKPASVHT---------- 330 (612)
Q Consensus 293 ~~~~~~~~~--------------------------------~~s~~~~~~~~~i~~~~~d~~~~~~~~~~---------- 330 (612)
....+.+.. .+ +++. .+++++.++.++.|+..-
T Consensus 338 ~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~-~~~~----~l~~~~~d~~i~~~~~~~~~~~~~~~~~ 412 (615)
T 1pgu_A 338 HNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDN-SKAQ----EYSSISWDDTLKVNGITKHEFGSQPKVA 412 (615)
T ss_dssp CSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEEC-CSTT----CCEEEETTTEEEETTEEEEECSSCEEEE
T ss_pred CCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEE-CCCc----EEEEEeCCCCEEEEEcccCcccCCceEE
Confidence 322211111 01 1122 667777777766665321
Q ss_pred ----------------------------------------------EEE----eCCcc-----CceE--EEeeccCCCeE
Q 007234 331 ----------------------------------------------FVA----YGLLL-----KPSF--QKILVNSGEDI 353 (612)
Q Consensus 331 ----------------------------------------------~~~----~g~~~-----~~~~--~~~~~h~~~v~ 353 (612)
++. +|... .... ..+..|...|.
T Consensus 413 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~ 492 (615)
T 1pgu_A 413 SANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPS 492 (615)
T ss_dssp EECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEE
T ss_pred EEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceE
Confidence 000 01000 0001 34456888999
Q ss_pred EEEecCCCceEeccccceeeecceeeec
Q 007234 354 NLNCSQDGVLLPMSQSLLKSKRGRYVQN 381 (612)
Q Consensus 354 ~l~~S~dg~~l~~s~s~d~~~~~w~~~~ 381 (612)
+++|+|||++| ++++.|+.+++|++.+
T Consensus 493 ~~~~s~~g~~l-~~~~~dg~i~iw~~~~ 519 (615)
T 1pgu_A 493 YISISPSETYI-AAGDVMGKILLYDLQS 519 (615)
T ss_dssp EEEECTTSSEE-EEEETTSCEEEEETTT
T ss_pred EEEECCCCCEE-EEcCCCCeEEEeeCCC
Confidence 99999999999 9999999999999854
No 49
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=3.4e-32 Score=299.85 Aligned_cols=330 Identities=11% Similarity=0.050 Sum_probs=254.2
Q ss_pred CcccceeEEEEcCCCC-EEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234 3 SSNIRDILTSFSPALD-YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (612)
Q Consensus 3 s~~V~~l~~~fspdg~-~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (612)
..+|..+ +|+|+++ ++++++.||.|++||..+++.+..+.+|... ...+.++.|.+.+
T Consensus 160 ~~~v~~~--~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~---------------~~~v~~~~~~~~~---- 218 (615)
T 1pgu_A 160 SQRINAC--HLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQ---------------GSFVRDVEFSPDS---- 218 (615)
T ss_dssp SSCEEEE--EECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCT---------------TCCEEEEEECSTT----
T ss_pred CccEEEE--EECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCC---------------CceEEEEEECCCC----
Confidence 4567555 9999998 7999999999999999999999988766540 0134455565542
Q ss_pred cccCCcEEEEEECCCcEEEEEcCCCeEEEEecc---CCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecC
Q 007234 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSD---CHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS 158 (612)
Q Consensus 82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~---~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~ 158 (612)
+.++++++.+|.|++||+.+++.+..+.. +|...|.+++|+ ++++|++++.|+.|++||+.+++.+..+..+
T Consensus 219 ----~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~ 293 (615)
T 1pgu_A 219 ----GEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLD 293 (615)
T ss_dssp ----CCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred ----CCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCC
Confidence 56899999999999999999999877745 799999999999 9999999999999999999999999998876
Q ss_pred C----CCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeC----------------------
Q 007234 159 T----KGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDN---------------------- 210 (612)
Q Consensus 159 ~----~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~---------------------- 210 (612)
. ..+.++.|+ +++++++++ |.|++||+.+++.+..+.+|..+|.+++| |+
T Consensus 294 ~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~ 371 (615)
T 1pgu_A 294 KQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDH 371 (615)
T ss_dssp TTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TTTEEEETTSCEEETTTTEEECCC
T ss_pred CCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCcc
Confidence 3 577888886 888888887 89999999998888888877776666666 43
Q ss_pred -----------CcEEEEEEcCCCeEEEEEcCCCcc----------------------------------c----------
Q 007234 211 -----------GKYVLSSAVGERYIALWRTDGVKK----------------------------------Q---------- 235 (612)
Q Consensus 211 -----------~~~l~s~s~~d~~i~vwd~~~~~~----------------------------------~---------- 235 (612)
+..+++++ .|+.+++|++.+++. .
T Consensus 372 ~~~v~~~~~~~~~~l~~~~-~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (615)
T 1pgu_A 372 SNLIVSLDNSKAQEYSSIS-WDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGS 450 (615)
T ss_dssp CSCEEEEECCSTTCCEEEE-TTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEE
T ss_pred cCceEEEEECCCcEEEEEe-CCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCce
Confidence 55556655 466666666543110 0
Q ss_pred ----------------cce---------ee-EeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecc
Q 007234 236 ----------------SAS---------CV-LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRN 289 (612)
Q Consensus 236 ----------------~~~---------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~ 289 (612)
... .. ..+..+...+..+.|+ |++++|++++.||.|++||+.+++.+..
T Consensus 451 ~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s-----~~g~~l~~~~~dg~i~iw~~~~~~~~~~ 525 (615)
T 1pgu_A 451 AVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISIS-----PSETYIAAGDVMGKILLYDLQSREVKTS 525 (615)
T ss_dssp EEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEEC-----TTSSEEEEEETTSCEEEEETTTTEEEEC
T ss_pred EEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEEC-----CCCCEEEEcCCCCeEEEeeCCCCcceeE
Confidence 000 00 2222344456667776 9999999999999999999999998877
Q ss_pred cCC-ceeEeecccccCC----------CCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEec
Q 007234 290 TKA-TKILSSSEDVNSK----------SQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCS 358 (612)
Q Consensus 290 ~~~-~~~~~~~~~~~s~----------~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S 358 (612)
... ....+.+.. ++| +++ .+++++.|+.+++|+. .........+.+|...|.+++|+
T Consensus 526 ~~~~h~~~v~~~~-~sp~~~~~~~~~~~~~----~l~~~~~dg~i~iw~~-------~~~~~~~~~~~~h~~~v~~l~~s 593 (615)
T 1pgu_A 526 RWAFRTSKINAIS-WKPAEKGANEEEIEED----LVATGSLDTNIFIYSV-------KRPMKIIKALNAHKDGVNNLLWE 593 (615)
T ss_dssp CSCCCSSCEEEEE-ECCCC------CCSCC----EEEEEETTSCEEEEES-------SCTTCCEEETTSSTTCEEEEEEE
T ss_pred eecCCCCceeEEE-EcCccccccccccCCC----EEEEEcCCCcEEEEEC-------CCCceechhhhcCccceEEEEEc
Confidence 654 433344333 777 776 8899998877776651 11124556778899999999999
Q ss_pred CCCceEeccccceeeecceeee
Q 007234 359 QDGVLLPMSQSLLKSKRGRYVQ 380 (612)
Q Consensus 359 ~dg~~l~~s~s~d~~~~~w~~~ 380 (612)
|||+ | ++++.|+++++|++.
T Consensus 594 ~~~~-l-~s~~~d~~v~iw~~~ 613 (615)
T 1pgu_A 594 TPST-L-VSSGADACIKRWNVV 613 (615)
T ss_dssp ETTE-E-EEEETTSCEEEEEEC
T ss_pred CCCC-e-EEecCCceEEEEeee
Confidence 9999 8 999999999999873
No 50
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.3e-31 Score=281.72 Aligned_cols=271 Identities=14% Similarity=0.242 Sum_probs=220.9
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeec--cCCccccccccccccccccccceeEEEeeecccccccccCCcE
Q 007234 11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFAD--IASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (612)
Q Consensus 11 ~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (612)
++||++ ++||+|. |++|+|||..+|++...+.. |...|. +++|.+. +.+
T Consensus 111 l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~------------------sv~fspd---------g~~ 161 (420)
T 4gga_A 111 VDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYIS------------------SVAWIKE---------GNY 161 (420)
T ss_dssp EEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEE------------------EEEECTT---------SSE
T ss_pred EEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEE------------------EEEECCC---------CCE
Confidence 599986 4788776 89999999999998887753 333344 5555443 889
Q ss_pred EEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCC-ceeEEEecCCCCeeEEEE
Q 007234 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG-SLLGKFRASTKGISCMAV 167 (612)
Q Consensus 89 l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~-~~~~~~~~~~~~v~~l~~ 167 (612)
|++|+.||.|++||+.+++.+..+ .+|...+.+++++ +..+++|+.|+.+++||.... ..+..+.+|...+..+.+
T Consensus 162 lasgs~Dg~v~iWd~~~~~~~~~~-~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~ 238 (420)
T 4gga_A 162 LAVGTSSAEVQLWDVQQQKRLRNM-TSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRW 238 (420)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEE
T ss_pred EEEEECCCeEEEEEcCCCcEEEEE-eCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeee
Confidence 999999999999999999998776 6799999998875 679999999999999998764 556778999999999999
Q ss_pred CCCCCEEEEeC--CeEEEEEcCCCe----eEEEEecCCCCEEEEEEeeCCc-EEEEE-EcCCCeEEEEEcCCCcccccee
Q 007234 168 SSDGKMLATAA--GQLKTFNCSDHK----KMQKFSGHPGAVRFMTFSDNGK-YVLSS-AVGERYIALWRTDGVKKQSASC 239 (612)
Q Consensus 168 spdg~~l~~~~--g~i~lwd~~~~~----~~~~~~~h~~~v~~l~~sp~~~-~l~s~-s~~d~~i~vwd~~~~~~~~~~~ 239 (612)
+|+++++++++ +.+++||..+++ .+.....|...|.+++|+|++. .++++ ++.|++|++||+.++...
T Consensus 239 ~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~---- 314 (420)
T 4gga_A 239 APDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL---- 314 (420)
T ss_dssp CTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEE----
T ss_pred cCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccc----
Confidence 99999999988 899999998764 3567788999999999999765 44443 346999999999988643
Q ss_pred eEeecCCceeEEeEEecCCccCCCCcEEEEEe--cCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhcc
Q 007234 240 VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS--ETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAA 317 (612)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~ 317 (612)
..+..+..+.. ..++ +++..+++++ .||.|++||+.+++.+.
T Consensus 315 -~~~~~~~~v~~-~~~~-----~~~~~lv~~sg~~d~~I~iwd~~~~~~v~----------------------------- 358 (420)
T 4gga_A 315 -SAVDAHSQVCS-ILWS-----PHYKELISGHGFAQNQLVIWKYPTMAKVA----------------------------- 358 (420)
T ss_dssp -EEEECSSCEEE-EEEE-----TTTTEEEEEECTTTCCEEEEETTTCCEEE-----------------------------
T ss_pred -eeeccccceee-eeec-----CCCCeEEEEEecCCCEEEEEECCCCcEEE-----------------------------
Confidence 44445555544 4454 7888887765 68999999987665432
Q ss_pred cccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceeee
Q 007234 318 KLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (612)
Q Consensus 318 ~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~~ 380 (612)
++.+|.+.|.+++|||||++| +|||.|+++++|++.
T Consensus 359 --------------------------~l~gH~~~V~~l~~spdg~~l-~S~s~D~tvriWdv~ 394 (420)
T 4gga_A 359 --------------------------ELKGHTSRVLSLTMSPDGATV-ASAAADETLRLWRCF 394 (420)
T ss_dssp --------------------------EECCCSSCEEEEEECTTSSCE-EEEETTTEEEEECCS
T ss_pred --------------------------EEcCCCCCEEEEEEcCCCCEE-EEEecCCeEEEEECC
Confidence 456788899999999999999 999999999999873
No 51
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-31 Score=267.77 Aligned_cols=273 Identities=20% Similarity=0.247 Sum_probs=227.9
Q ss_pred CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (612)
Q Consensus 2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (612)
+..+|+++ +| |++++|++|+.||.|++||+.+++....+..|...+.++.|+++
T Consensus 17 h~~~v~~~--~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~----------------------- 70 (313)
T 3odt_A 17 HDQDVRDV--VA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSE----------------------- 70 (313)
T ss_dssp CSSCEEEE--EE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETT-----------------------
T ss_pred CCCCcEEE--Ee-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCC-----------------------
Confidence 46788655 99 99999999999999999999999998888877766665555555
Q ss_pred cccCCcEEEEEECCCcEEEEEcCCC---eEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecC
Q 007234 82 RKLGSSLLVLGTGGGDVLALAVSAG---QLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS 158 (612)
Q Consensus 82 ~~~~~~~l~~gs~~g~I~vwd~~~~---~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~ 158 (612)
+.++++|+.+|.|++|++... +....+ .+|...|.+++| +++.+++++.||.|++|| .++....+..|
T Consensus 71 ----~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~ 141 (313)
T 3odt_A 71 ----KELLLFGGKDTMINGVPLFATSGEDPLYTL-IGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAH 141 (313)
T ss_dssp ----TTEEEEEETTSCEEEEETTCCTTSCC-CEE-CCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECC
T ss_pred ----CCEEEEecCCCeEEEEEeeecCCCCcccch-hhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccC
Confidence 889999999999999998765 344444 679999999999 577999999999999999 78888899999
Q ss_pred CCCeeEEEECC-CCCEEEEeC--CeEEEEEcCCCeeEEEEec-CCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCcc
Q 007234 159 TKGISCMAVSS-DGKMLATAA--GQLKTFNCSDHKKMQKFSG-HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK 234 (612)
Q Consensus 159 ~~~v~~l~~sp-dg~~l~~~~--g~i~lwd~~~~~~~~~~~~-h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~ 234 (612)
...+.+++|+| +++++++++ |.|++|| .++....+.. |...+.+++|+|++. +++++ .|+.|++||+.+++.
T Consensus 142 ~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~-~dg~i~i~d~~~~~~ 217 (313)
T 3odt_A 142 NASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCS-NDGLIKLVDMHTGDV 217 (313)
T ss_dssp SSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEE-TTSEEEEEETTTCCE
T ss_pred CCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEcc-CCCeEEEEECCchhh
Confidence 99999999988 899999888 8999999 5667777877 999999999999998 77776 799999999998764
Q ss_pred ccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhh
Q 007234 235 QSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAI 314 (612)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i 314 (612)
. ..+..+...+..+.|+ |++ .+++++.||.|++||+.+++.+.
T Consensus 218 ~-----~~~~~~~~~i~~~~~~-----~~~-~l~~~~~dg~v~iwd~~~~~~~~-------------------------- 260 (313)
T 3odt_A 218 L-----RTYEGHESFVYCIKLL-----PNG-DIVSCGEDRTVRIWSKENGSLKQ-------------------------- 260 (313)
T ss_dssp E-----EEEECCSSCEEEEEEC-----TTS-CEEEEETTSEEEEECTTTCCEEE--------------------------
T ss_pred h-----hhhhcCCceEEEEEEe-----cCC-CEEEEecCCEEEEEECCCCceeE--------------------------
Confidence 3 4455555667778887 888 58999999999999987664321
Q ss_pred hcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceeeec
Q 007234 315 FAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN 381 (612)
Q Consensus 315 ~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~~~ 381 (612)
.+..|...|.+++|+|||++ ++++.|+.+++|++.+
T Consensus 261 -----------------------------~~~~~~~~i~~~~~~~~~~~--~~~~~dg~i~iw~~~~ 296 (313)
T 3odt_A 261 -----------------------------VITLPAISIWSVDCMSNGDI--IVGSSDNLVRIFSQEK 296 (313)
T ss_dssp -----------------------------EEECSSSCEEEEEECTTSCE--EEEETTSCEEEEESCG
T ss_pred -----------------------------EEeccCceEEEEEEccCCCE--EEEeCCCcEEEEeCCC
Confidence 33456668999999999994 5688899999999844
No 52
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.5e-32 Score=290.59 Aligned_cols=257 Identities=12% Similarity=0.170 Sum_probs=194.9
Q ss_pred CcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCc-----------EEEEeeccCCccccccccccccccccccceeEE
Q 007234 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ-----------VQTEFADIASTETTSLYGNRLEREHLSVDYTCM 71 (612)
Q Consensus 3 s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~-----------~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 71 (612)
..+|.++ +|+|+|++||+|+.||.|+|||+.+++ +...+.+|........ .-.....+.++
T Consensus 28 ~~~V~~v--~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~------~~~~~~~V~~l 99 (447)
T 3dw8_B 28 ADIISTV--EFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLK------SLEIEEKINKI 99 (447)
T ss_dssp GGSEEEE--EECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGG------TEEECCCCCEE
T ss_pred cCcEEEE--EECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccc------cccccCceEEE
Confidence 4577544 999999999999999999999999887 4677776652100000 00001235566
Q ss_pred EeeecccccccccCCcEEEEEECCCcEEEEEcCCCeEE---------------------------------------EEe
Q 007234 72 KWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLK---------------------------------------WRL 112 (612)
Q Consensus 72 ~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~---------------------------------------~~~ 112 (612)
.|.+... ...+++++.||.|++||+.++... ..+
T Consensus 100 ~~~~~~~-------~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (447)
T 3dw8_B 100 RWLPQKN-------AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIF 172 (447)
T ss_dssp EECCCCS-------SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEE
T ss_pred EEcCCCC-------cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEe
Confidence 6665421 268999999999999999875432 133
Q ss_pred ccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCC-CceeEE-------EecCCCCeeEEEECCCC-CEEEEeC--CeE
Q 007234 113 SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT-GSLLGK-------FRASTKGISCMAVSSDG-KMLATAA--GQL 181 (612)
Q Consensus 113 ~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~-~~~~~~-------~~~~~~~v~~l~~spdg-~~l~~~~--g~i 181 (612)
..+|...|++++|+|++++|++| .|+.|++||+.+ ++.+.. +..|...|.+++|+|++ +++++++ |.|
T Consensus 173 ~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i 251 (447)
T 3dw8_B 173 ANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTI 251 (447)
T ss_dssp CSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCE
T ss_pred ccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeE
Confidence 46899999999999999999998 799999999984 444442 45788899999999998 8999988 899
Q ss_pred EEEEcCCCee----EEEEecCCC------------CEEEEEEeeCCcEEEEEEcCCCeEEEEEcCC-CccccceeeEeec
Q 007234 182 KTFNCSDHKK----MQKFSGHPG------------AVRFMTFSDNGKYVLSSAVGERYIALWRTDG-VKKQSASCVLAME 244 (612)
Q Consensus 182 ~lwd~~~~~~----~~~~~~h~~------------~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~-~~~~~~~~~~~~~ 244 (612)
++||+++++. +..+.+|.. .|.+++|+|+|++|++++ . +.|++||+.. ++.. ..+.
T Consensus 252 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~-~~v~iwd~~~~~~~~-----~~~~ 324 (447)
T 3dw8_B 252 RLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRD-Y-LSVKVWDLNMENRPV-----ETYQ 324 (447)
T ss_dssp EEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEE-S-SEEEEEETTCCSSCS-----CCEE
T ss_pred EEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEee-C-CeEEEEeCCCCcccc-----ceee
Confidence 9999999886 788888886 899999999999999886 5 9999999987 5433 2222
Q ss_pred CCceeE---------------EeEEecCCccCCCCcEEEEEecCCcEEEEECCCccee
Q 007234 245 HPAVFM---------------DCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL 287 (612)
Q Consensus 245 ~~~~~~---------------~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~ 287 (612)
.+.... ..++|+ |++.+|++++.||.|++||+.+++.+
T Consensus 325 ~~~~~~~~l~~~~~~~~i~~~~~~~~s-----~~~~~l~s~s~dg~v~iwd~~~~~~~ 377 (447)
T 3dw8_B 325 VHEYLRSKLCSLYENDCIFDKFECCWN-----GSDSVVMTGSYNNFFRMFDRNTKRDI 377 (447)
T ss_dssp SCGGGTTTHHHHHHTSGGGCCCCEEEC-----TTSSEEEEECSTTEEEEEETTTCCEE
T ss_pred ccccccccccccccccccccceEEEEC-----CCCCEEEEeccCCEEEEEEcCCCcce
Confidence 222211 125676 99999999999999999999988765
No 53
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.3e-31 Score=285.30 Aligned_cols=306 Identities=12% Similarity=0.178 Sum_probs=239.0
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEE
Q 007234 12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL 91 (612)
Q Consensus 12 ~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~ 91 (612)
++++++++|++|+.||+|++||+.+++.+..+.+|.+.+.++.|+++ + .+++
T Consensus 127 ~~~~~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~---------------------------~-~l~s 178 (464)
T 3v7d_B 127 CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG---------------------------G-ILVS 178 (464)
T ss_dssp EEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECST---------------------------T-EEEE
T ss_pred EEEECCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCC---------------------------C-EEEE
Confidence 45557889999999999999999999999999888877766655543 4 8999
Q ss_pred EECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEec--CCCEEEEEecCCcEEEEECCCCce------------------
Q 007234 92 GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT--HGSCIYSAGADGMVCEIDPLTGSL------------------ 151 (612)
Q Consensus 92 gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp--~~~~l~s~s~dg~v~iwd~~~~~~------------------ 151 (612)
|+.||.|++||+.+++.+..+ .+|...|.+++|++ +++++++|+.||+|++||+.+++.
T Consensus 179 ~s~dg~i~vwd~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 257 (464)
T 3v7d_B 179 GSTDRTVRVWDIKKGCCTHVF-EGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPE 257 (464)
T ss_dssp EETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGG
T ss_pred EeCCCCEEEEECCCCcEEEEE-CCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccC
Confidence 999999999999999988776 57999999999984 778999999999999999987653
Q ss_pred -----eEEEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeE
Q 007234 152 -----LGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYI 224 (612)
Q Consensus 152 -----~~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i 224 (612)
+..+.+|...+.++ +++++++++++ |.|++||+++++.+..+.+|...|.+++|+|+++++++++ .|+.|
T Consensus 258 ~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~-~dg~i 334 (464)
T 3v7d_B 258 ENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISAS-MDTTI 334 (464)
T ss_dssp GCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEE-TTSCE
T ss_pred CCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCCcE
Confidence 45667777777776 57789999988 8999999999999999999999999999999999999988 79999
Q ss_pred EEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCc-eeEeeccccc
Q 007234 225 ALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKAT-KILSSSEDVN 303 (612)
Q Consensus 225 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~ 303 (612)
++||+.+++. +..+..+...+..+.++ +.++++++.||.|++||+.++......... .... ..+
T Consensus 335 ~vwd~~~~~~-----~~~~~~h~~~v~~~~~~-------~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~---~~~ 399 (464)
T 3v7d_B 335 RIWDLENGEL-----MYTLQGHTALVGLLRLS-------DKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAI---TTF 399 (464)
T ss_dssp EEEETTTTEE-----EEEECCCSSCEEEEEEC-------SSEEEEEETTSEEEEEETTTCCEEEEEECTTCCCE---EEE
T ss_pred EEEECCCCcE-----EEEEeCCCCcEEEEEEc-------CCEEEEEeCCCcEEEEECCCCceeeeecCCCCccE---EEE
Confidence 9999998763 34555566666677664 589999999999999999987655433211 1111 124
Q ss_pred CCCCcccchhhhcccccceecCCCceEEEEeCCccCceEE-EeeccCCCeEEEEecCCCceEeccccceeeecceee
Q 007234 304 SKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQ-KILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (612)
Q Consensus 304 s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~-~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~ 379 (612)
+++++ .+++++ ++.+++|+ ........ .+..|...|++++|+ +..++++++.|+...+|-+
T Consensus 400 ~~~~~----~l~~~~-dg~i~iwd--------~~~g~~~~~~~~~~~~~v~~v~~~--~~~l~~~~~~~g~~~i~~l 461 (464)
T 3v7d_B 400 YVSDN----ILVSGS-ENQFNIYN--------LRSGKLVHANILKDADQIWSVNFK--GKTLVAAVEKDGQSFLEIL 461 (464)
T ss_dssp EECSS----EEEEEE-TTEEEEEE--------TTTCCEEESCTTTTCSEEEEEEEE--TTEEEEEEEETTEEEEEEE
T ss_pred EeCCC----EEEEec-CCeEEEEE--------CCCCcEEehhhccCCCcEEEEEec--CCEEEEEEEeCCeEEEEEe
Confidence 55655 666666 66666554 11122222 245677889999997 5555477777776666543
No 54
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.6e-33 Score=292.03 Aligned_cols=315 Identities=13% Similarity=0.128 Sum_probs=223.1
Q ss_pred CCcccceeEEEEcC-CCCEEEEEeCCCcEEEEECCC---Cc---EEEEeeccCCccccccccccccccccccceeEEEee
Q 007234 2 GSSNIRDILTSFSP-ALDYFAICSGDARIKIWDTLK---GQ---VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWL 74 (612)
Q Consensus 2 ~s~~V~~l~~~fsp-dg~~las~s~dg~i~iwd~~~---~~---~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~ 74 (612)
++++|+++ +|+| +|++||+|+.||+|+|||+.+ +. ....+ .|... +.++.|.
T Consensus 62 h~~~V~~~--~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~------------------v~~~~~~ 120 (437)
T 3gre_A 62 EPNSITSS--AVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSST------------------VTQITMI 120 (437)
T ss_dssp TTSCEEEE--EEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSC------------------EEEEEEC
T ss_pred CCCceEEE--EECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCC------------------EEEEEEe
Confidence 46788655 9999 999999999999999999876 33 22222 24444 4455555
Q ss_pred ecccccccccCCcEEEEEECCCcEEEEEcC---CCeEEEEe--------c-cC--CCCCeEEEE--EecCCCEEEEEecC
Q 007234 75 SVDRKKKRKLGSSLLVLGTGGGDVLALAVS---AGQLKWRL--------S-DC--HPGGVSAIS--FATHGSCIYSAGAD 138 (612)
Q Consensus 75 ~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~---~~~~~~~~--------~-~~--h~~~V~~l~--~sp~~~~l~s~s~d 138 (612)
+. +.++++|+.||.|++||+. +++..... . .. +...+.++. +++++.+|++|+.|
T Consensus 121 ~~---------~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 191 (437)
T 3gre_A 121 PN---------FDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNL 191 (437)
T ss_dssp TT---------SSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETT
T ss_pred CC---------CCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCC
Confidence 42 7889999999999999995 45443221 1 11 566777777 55789999999999
Q ss_pred CcEEEEECCCCceeEEEec--CCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEe-cCCCCEEEEEEe----e
Q 007234 139 GMVCEIDPLTGSLLGKFRA--STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS-GHPGAVRFMTFS----D 209 (612)
Q Consensus 139 g~v~iwd~~~~~~~~~~~~--~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~-~h~~~v~~l~~s----p 209 (612)
+.|++||+++++++..+.. |...|++++|+|++++|++|+ |.|++||+++++++..+. +|..+|.+++|+ |
T Consensus 192 ~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~ 271 (437)
T 3gre_A 192 SRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGK 271 (437)
T ss_dssp SEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCT
T ss_pred CeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCC
Confidence 9999999999999999998 788999999999999999998 899999999999999886 788899999665 4
Q ss_pred CCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecC--------------------------CceeEEeEEecCCccCCC
Q 007234 210 NGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEH--------------------------PAVFMDCRCIDNGGVDDA 263 (612)
Q Consensus 210 ~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~ 263 (612)
++.++++++ .|+.|++||+.+++.. ..+.. +...+..++|+ +
T Consensus 272 ~~~~l~s~~-~dg~i~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~------~ 339 (437)
T 3gre_A 272 NSVIVVGGS-SKTFLTIWNFVKGHCQ-----YAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS------N 339 (437)
T ss_dssp TEEEEEEES-TTEEEEEEETTTTEEE-----EEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE------T
T ss_pred CccEEEEEc-CCCcEEEEEcCCCcEE-----EEEEcCCCCCccceecccccccccceecccccCCceEEEEEC------C
Confidence 677888886 7999999999987643 11111 22334455563 5
Q ss_pred CcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhcccccceecCCCceEEEEe-CCccCceE
Q 007234 264 GLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAY-GLLLKPSF 342 (612)
Q Consensus 264 ~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~-g~~~~~~~ 342 (612)
+.+|++++.||.|++||+.+++.+............ +.+ . ....+....... ........
T Consensus 340 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~---~~~-----------~-----~~~~~~~~~~~~~~~~~~~~~ 400 (437)
T 3gre_A 340 DKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDV---FIP-----------T-----QVTANLTMLLRKMKRTSTHSV 400 (437)
T ss_dssp TEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCE---EEE-----------E-----EEETTEEEEEEECC-------
T ss_pred ceEEEecCCCCeEEEEECCCcccceEEecccccCce---EEE-----------E-----EeecceEEEEEeccccccccc
Confidence 589999999999999999998876544332110000 000 0 000011111111 00111112
Q ss_pred EEeeccCCCeEEEEecCC--CceEeccccceeeeccee
Q 007234 343 QKILVNSGEDINLNCSQD--GVLLPMSQSLLKSKRGRY 378 (612)
Q Consensus 343 ~~~~~h~~~v~~l~~S~d--g~~l~~s~s~d~~~~~w~ 378 (612)
.....|...|.+++++++ +.+| +||+.|+.+++|+
T Consensus 401 ~~~~~h~~~I~~i~~~~~~~~~~l-~s~~~dG~I~iw~ 437 (437)
T 3gre_A 401 DDSLYHHDIINSISTCEVDETPLL-VACDNSGLIGIFQ 437 (437)
T ss_dssp ------CCCEEEEEEEESSSSEEE-EEEETTSCEEEEC
T ss_pred CcccccccceeeEeeeccCCceEE-EEEcCCceEEEeC
Confidence 344569999999999998 7788 9999999999994
No 55
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.9e-31 Score=278.56 Aligned_cols=279 Identities=15% Similarity=0.177 Sum_probs=228.5
Q ss_pred cceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeec-cCCccccccccccccccccccceeEEEeeeccccccccc
Q 007234 6 IRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFAD-IASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (612)
Q Consensus 6 V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (612)
+...+++|++ ..+++++.||.|++||+.+++....+.. |.. .+.++.|.+.
T Consensus 94 ~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~------------------~v~~v~~s~~-------- 145 (401)
T 4aez_A 94 YYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETDEST------------------YVASVKWSHD-------- 145 (401)
T ss_dssp TTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECCTTC------------------CEEEEEECTT--------
T ss_pred ceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecCCCC------------------CEEEEEECCC--------
Confidence 3344456665 5577888999999999999998877754 333 3445555543
Q ss_pred CCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECC-CCceeEEEecCCCCee
Q 007234 85 GSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL-TGSLLGKFRASTKGIS 163 (612)
Q Consensus 85 ~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~-~~~~~~~~~~~~~~v~ 163 (612)
+.++++|+.+|.|++||+.+++.+..+ .+|...|.+++|+ ++.+++++.||.|++||++ .+..+..+..|...|.
T Consensus 146 -~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~ 221 (401)
T 4aez_A 146 -GSFLSVGLGNGLVDIYDVESQTKLRTM-AGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVC 221 (401)
T ss_dssp -SSEEEEEETTSCEEEEETTTCCEEEEE-CCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEE
T ss_pred -CCEEEEECCCCeEEEEECcCCeEEEEe-cCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCee
Confidence 789999999999999999999988777 5799999999994 5799999999999999998 5677888999999999
Q ss_pred EEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEc--CCCeEEEEEcCCCcccccee
Q 007234 164 CMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV--GERYIALWRTDGVKKQSASC 239 (612)
Q Consensus 164 ~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~--~d~~i~vwd~~~~~~~~~~~ 239 (612)
+++|+|+++++++++ |.|++||+++++.+..+.+|...|.+++|+|++..++++++ .|+.|++||+.+++..
T Consensus 222 ~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~---- 297 (401)
T 4aez_A 222 GLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARV---- 297 (401)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEE----
T ss_pred EEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEE----
Confidence 999999999999988 89999999999999999999999999999998765555542 5999999999987643
Q ss_pred eEeecCCceeEEeEEecCCccCCCCcEEEEEe--cCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhcc
Q 007234 240 VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS--ETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAA 317 (612)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~ 317 (612)
..+.+.. .+..+.|+ |++.++++++ .||.|++||+.+++...
T Consensus 298 -~~~~~~~-~v~~~~~s-----~~~~~l~~~~g~~dg~i~v~~~~~~~~~~----------------------------- 341 (401)
T 4aez_A 298 -NTVDAGS-QVTSLIWS-----PHSKEIMSTHGFPDNNLSIWSYSSSGLTK----------------------------- 341 (401)
T ss_dssp -EEEECSS-CEEEEEEC-----SSSSEEEEEECTTTCEEEEEEEETTEEEE-----------------------------
T ss_pred -EEEeCCC-cEEEEEEC-----CCCCeEEEEeecCCCcEEEEecCCcccee-----------------------------
Confidence 3444443 45667787 9999999954 89999999976543211
Q ss_pred cccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceeeec
Q 007234 318 KLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN 381 (612)
Q Consensus 318 ~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~~~ 381 (612)
...+.+|...|.+++|+|||.+| ++++.|+.+++|++.+
T Consensus 342 ------------------------~~~~~~h~~~v~~~~~s~dg~~l-~s~~~dg~i~iw~~~~ 380 (401)
T 4aez_A 342 ------------------------QVDIPAHDTRVLYSALSPDGRIL-STAASDENLKFWRVYD 380 (401)
T ss_dssp ------------------------EEEEECCSSCCCEEEECTTSSEE-EEECTTSEEEEEECCC
T ss_pred ------------------------EEEecCCCCCEEEEEECCCCCEE-EEEeCCCcEEEEECCC
Confidence 00345677789999999999999 9999999999999843
No 56
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=7.4e-32 Score=281.13 Aligned_cols=301 Identities=12% Similarity=0.078 Sum_probs=228.5
Q ss_pred CCcccceeEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccc
Q 007234 2 GSSNIRDILTSFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (612)
Q Consensus 2 ~s~~V~~l~~~fsp-dg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~ 80 (612)
+.++|.++ +|+| +|++||+|+.||.|++||+.+++....+...... . .......+ ....+.++.|.+.+
T Consensus 42 h~~~v~~~--~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~--~--~~~~~~~~-~~~~v~~~~~~~~~--- 111 (408)
T 4a11_B 42 HGGGINTL--DIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVC--S--IGRDHPDV-HRYSVETVQWYPHD--- 111 (408)
T ss_dssp CSSCEEEE--EECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEE--E--ECTTCTTC-CSSCEEEEEECTTC---
T ss_pred cCCcEEEE--EEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccc--c--cccccccc-CCCcEEEEEEccCC---
Confidence 56788555 9999 9999999999999999999988755443210000 0 00000001 13356677776643
Q ss_pred ccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCC---CEEEEEecCCcEEEEECCCCceeEEEec
Q 007234 81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHG---SCIYSAGADGMVCEIDPLTGSLLGKFRA 157 (612)
Q Consensus 81 ~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~---~~l~s~s~dg~v~iwd~~~~~~~~~~~~ 157 (612)
+.++++++.+|.|++||+.+++....+. +...+.++.|+|.+ .++++++.|+.|++||+.+++.+..+..
T Consensus 112 -----~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~ 184 (408)
T 4a11_B 112 -----TGMFTSSSFDKTLKVWDTNTLQTADVFN--FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQG 184 (408)
T ss_dssp -----TTCEEEEETTSEEEEEETTTTEEEEEEE--CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECC
T ss_pred -----CcEEEEEeCCCeEEEeeCCCCccceecc--CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecC
Confidence 6789999999999999999999886663 77889999999854 4899999999999999999999999999
Q ss_pred CCCCeeEEEECCCCC-EEEEeC--CeEEEEEcCCCe-eEEEE---------------ecCCCCEEEEEEeeCCcEEEEEE
Q 007234 158 STKGISCMAVSSDGK-MLATAA--GQLKTFNCSDHK-KMQKF---------------SGHPGAVRFMTFSDNGKYVLSSA 218 (612)
Q Consensus 158 ~~~~v~~l~~spdg~-~l~~~~--g~i~lwd~~~~~-~~~~~---------------~~h~~~v~~l~~sp~~~~l~s~s 218 (612)
|...|.+++|+|+++ ++++++ |.|++||++++. .+..+ .+|...|.+++|+|+++++++++
T Consensus 185 ~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 264 (408)
T 4a11_B 185 HRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVG 264 (408)
T ss_dssp CCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEE
T ss_pred CCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEec
Confidence 999999999999998 477776 899999998775 34444 57889999999999999999998
Q ss_pred cCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEee
Q 007234 219 VGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSS 298 (612)
Q Consensus 219 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~ 298 (612)
.|+.|++||+.+++....................... ..+..+++++.||.|++||+.+++.+.
T Consensus 265 -~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~i~v~d~~~~~~~~---------- 328 (408)
T 4a11_B 265 -TDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSC-----GCSSEFVFVPYGSTIAVYTVYSGEQIT---------- 328 (408)
T ss_dssp -TTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECC-----SSSSCEEEEEETTEEEEEETTTCCEEE----------
T ss_pred -CCCeEEEEECCCCccceeccccccccccccceeEEec-----CCCceEEEEecCCEEEEEECcCCccee----------
Confidence 7999999999987644111000111111112222222 445667788889999999987665432
Q ss_pred cccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeeccee
Q 007234 299 SEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY 378 (612)
Q Consensus 299 ~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~ 378 (612)
.+.+|...|.+++|+|||++| ++++.|+.+++|+
T Consensus 329 ---------------------------------------------~~~~~~~~v~~~~~s~~~~~l-~s~~~dg~i~iw~ 362 (408)
T 4a11_B 329 ---------------------------------------------MLKGHYKTVDCCVFQSNFQEL-YSGSRDCNILAWV 362 (408)
T ss_dssp ---------------------------------------------EECCCSSCEEEEEEETTTTEE-EEEETTSCEEEEE
T ss_pred ---------------------------------------------eeccCCCeEEEEEEcCCCCEE-EEECCCCeEEEEe
Confidence 344677789999999999999 9999999999999
Q ss_pred eec
Q 007234 379 VQN 381 (612)
Q Consensus 379 ~~~ 381 (612)
+..
T Consensus 363 ~~~ 365 (408)
T 4a11_B 363 PSL 365 (408)
T ss_dssp ECC
T ss_pred CCC
Confidence 854
No 57
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.8e-31 Score=270.69 Aligned_cols=276 Identities=13% Similarity=0.208 Sum_probs=222.4
Q ss_pred CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEE---Eee--ccCCccccccccccccccccccceeEEEeeec
Q 007234 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQT---EFA--DIASTETTSLYGNRLEREHLSVDYTCMKWLSV 76 (612)
Q Consensus 2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~---~~~--~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~ 76 (612)
+..+|.++ +|+|++++|++++ ||.|++||+.++.... .+. .|.. ...++.|.+.
T Consensus 50 h~~~v~~~--~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~------------------~v~~~~~~~~ 108 (337)
T 1gxr_A 50 HGEVVCAV--TISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDN------------------YIRSCKLLPD 108 (337)
T ss_dssp CSSCCCEE--EECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTS------------------BEEEEEECTT
T ss_pred CCCceEEE--EEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCC------------------cEEEEEEcCC
Confidence 45678655 9999999999999 9999999998776332 222 3333 3445555543
Q ss_pred ccccccccCCcEEEEEECCCcEEEEEcCCCe--EEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEE
Q 007234 77 DRKKKRKLGSSLLVLGTGGGDVLALAVSAGQ--LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK 154 (612)
Q Consensus 77 ~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~ 154 (612)
++++++++.+|.|++||+.+++ ....+ ..|...|.+++|+|+++++++++.||.|++||+++++.+..
T Consensus 109 ---------~~~l~~~~~d~~i~~~d~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~ 178 (337)
T 1gxr_A 109 ---------GCTLIVGGEASTLSIWDLAAPTPRIKAEL-TSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQ 178 (337)
T ss_dssp ---------SSEEEEEESSSEEEEEECCCC--EEEEEE-ECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred ---------CCEEEEEcCCCcEEEEECCCCCcceeeec-ccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeee
Confidence 7889999999999999999887 33333 57899999999999999999999999999999999999999
Q ss_pred EecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCC
Q 007234 155 FRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (612)
Q Consensus 155 ~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~ 232 (612)
+..|...+.+++|+|+++++++++ |.|++||+++++.+..+. |...+.+++|+|+++++++++ .|+.|++||+.++
T Consensus 179 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~-~~~~i~~~~~~~~ 256 (337)
T 1gxr_A 179 FQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGM-ESSNVEVLHVNKP 256 (337)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTSS
T ss_pred eecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEc-CCCcEEEEECCCC
Confidence 999999999999999999999987 899999999999888775 788999999999999999987 7999999999887
Q ss_pred ccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccch
Q 007234 233 KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATA 312 (612)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 312 (612)
+.. ....+...+..+.|+ |++++|++++.||.|++||+.+++.+....... .+.+. .++|+++
T Consensus 257 ~~~------~~~~~~~~v~~~~~~-----~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~-~v~~~-~~s~~~~---- 319 (337)
T 1gxr_A 257 DKY------QLHLHESCVLSLKFA-----YCGKWFVSTGKDNLLNAWRTPYGASIFQSKESS-SVLSC-DISVDDK---- 319 (337)
T ss_dssp CEE------EECCCSSCEEEEEEC-----TTSSEEEEEETTSEEEEEETTTCCEEEEEECSS-CEEEE-EECTTSC----
T ss_pred CeE------EEcCCccceeEEEEC-----CCCCEEEEecCCCcEEEEECCCCeEEEEecCCC-cEEEE-EECCCCC----
Confidence 532 334445556777787 999999999999999999999987764322111 11111 2677777
Q ss_pred hhhcccccceecCCC
Q 007234 313 AIFAAKLQDIVKPAS 327 (612)
Q Consensus 313 ~i~~~~~d~~~~~~~ 327 (612)
.+++++.++.+++|+
T Consensus 320 ~l~~~~~dg~i~iw~ 334 (337)
T 1gxr_A 320 YIVTGSGDKKATVYE 334 (337)
T ss_dssp EEEEEETTSCEEEEE
T ss_pred EEEEecCCCeEEEEE
Confidence 788888877666554
No 58
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1e-32 Score=291.53 Aligned_cols=202 Identities=15% Similarity=0.149 Sum_probs=162.6
Q ss_pred cccceeEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEE--EEeeccCCccccccccccccccccccceeEEEeeeccccc
Q 007234 4 SNIRDILTSFSP-ALDYFAICSGDARIKIWDTLKGQVQ--TEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (612)
Q Consensus 4 ~~V~~l~~~fsp-dg~~las~s~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~ 80 (612)
..|++ ++|+| ++++||+|+.||+|+|||+.+++.. ..+.+|.+.|.+ +.|.|.+
T Consensus 120 ~~V~~--l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~------------------l~f~p~~--- 176 (435)
T 4e54_B 120 RRATS--LAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITG------------------LKFNPLN--- 176 (435)
T ss_dssp SCEEE--EEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCE------------------EEECSSC---
T ss_pred CCEEE--EEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEE------------------EEEeCCC---
Confidence 45754 49999 5679999999999999999877643 344456655554 4444433
Q ss_pred ccccCCcEEEEEECCCcEEEEEcCCCeEEEEe-ccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCC
Q 007234 81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRL-SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST 159 (612)
Q Consensus 81 ~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~-~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~ 159 (612)
+.+|++|+.||.|++||++++...... ...+...+.+++|+|++++|++|+.||.|++||++ ++.+..+.+|.
T Consensus 177 -----~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~ 250 (435)
T 4e54_B 177 -----TNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHK 250 (435)
T ss_dssp -----TTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCS
T ss_pred -----CCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEeccc
Confidence 778999999999999999877653222 12344568899999999999999999999999985 56677888999
Q ss_pred CCeeEEEECCCCC-EEEEeC--CeEEEEEcCCCeeEE---EEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCc
Q 007234 160 KGISCMAVSSDGK-MLATAA--GQLKTFNCSDHKKMQ---KFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (612)
Q Consensus 160 ~~v~~l~~spdg~-~l~~~~--g~i~lwd~~~~~~~~---~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~ 233 (612)
..|.+++|+|++. ++++++ +.|++||+++.+... ...+|..+|++++|+|+|++|++++ .|+.|++||+.++.
T Consensus 251 ~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~-~D~~i~iwd~~~~~ 329 (435)
T 4e54_B 251 KKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTD-QKSEIRVYSASQWD 329 (435)
T ss_dssp SCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEE-SSSCEEEEESSSSS
T ss_pred ceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEc-CCCEEEEEECCCCc
Confidence 9999999999986 666776 899999998876433 3367999999999999999999998 79999999999876
Q ss_pred cc
Q 007234 234 KQ 235 (612)
Q Consensus 234 ~~ 235 (612)
..
T Consensus 330 ~~ 331 (435)
T 4e54_B 330 CP 331 (435)
T ss_dssp SE
T ss_pred cc
Confidence 43
No 59
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=2.2e-31 Score=273.20 Aligned_cols=236 Identities=14% Similarity=0.182 Sum_probs=200.3
Q ss_pred cccceeEEEEcCCCCEEEEEeCCCcEEEEECCCC------cEEEEeeccCCccccccccccccccccccceeEEEeeecc
Q 007234 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKG------QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVD 77 (612)
Q Consensus 4 ~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~------~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~ 77 (612)
..|. +++|+|+|.+||+|+.|+.+++|++... .....+.+|...+.++.|+++
T Consensus 107 ~~v~--~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~------------------- 165 (354)
T 2pbi_B 107 TWVM--ACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNS------------------- 165 (354)
T ss_dssp SCCC--EEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSS-------------------
T ss_pred CCEE--EEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCC-------------------
Confidence 4564 5599999999999999999999998644 233444555554444444443
Q ss_pred cccccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEec--CCCEEEEEecCCcEEEEECCCCceeEEE
Q 007234 78 RKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT--HGSCIYSAGADGMVCEIDPLTGSLLGKF 155 (612)
Q Consensus 78 ~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp--~~~~l~s~s~dg~v~iwd~~~~~~~~~~ 155 (612)
+..+++|+.||.|++||+.+++.+..+ .+|...|.+++|+| ++++|++|+.||+|++||+++++++..+
T Consensus 166 --------~~~l~t~s~D~~v~lwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~ 236 (354)
T 2pbi_B 166 --------DMQILTASGDGTCALWDVESGQLLQSF-HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAF 236 (354)
T ss_dssp --------SSEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred --------CCEEEEEeCCCcEEEEeCCCCeEEEEE-cCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEe
Confidence 778999999999999999999988776 57999999999987 5689999999999999999999999999
Q ss_pred ecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecC--CCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCC
Q 007234 156 RASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGH--PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (612)
Q Consensus 156 ~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h--~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~ 231 (612)
..|...|.+++|+|++.++++++ ++|++||+++++.+..+..+ ...+.+++|+|+++++++++ .|+.|++||+.+
T Consensus 237 ~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~-~d~~i~vwd~~~ 315 (354)
T 2pbi_B 237 ETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGY-NDYTINVWDVLK 315 (354)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEE-TTSCEEEEETTT
T ss_pred cCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEE-CCCcEEEEECCC
Confidence 99999999999999999999998 89999999999887777544 35789999999999999987 799999999988
Q ss_pred CccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEE
Q 007234 232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY 280 (612)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd 280 (612)
++.. ..+..+...+..+.|+ |+|.+|++++.||.|++|+
T Consensus 316 ~~~~-----~~l~~h~~~v~~l~~s-----pdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 316 GSRV-----SILFGHENRVSTLRVS-----PDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp CSEE-----EEECCCSSCEEEEEEC-----TTSSCEEEEETTSEEEEEC
T ss_pred CceE-----EEEECCCCcEEEEEEC-----CCCCEEEEEcCCCCEEecC
Confidence 7633 3445566667788887 9999999999999999995
No 60
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.4e-31 Score=273.63 Aligned_cols=252 Identities=15% Similarity=0.204 Sum_probs=201.3
Q ss_pred CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCc--EEEEeeccCCccccccccccccccccccceeEEEeeecccc
Q 007234 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ--VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK 79 (612)
Q Consensus 2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~ 79 (612)
+..+|+++ +|+|+|++||+|+.|++|+|||..++. ++..+.+|...+.++.|+++
T Consensus 60 h~~~v~~~--~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~--------------------- 116 (345)
T 3fm0_A 60 HQRTVRKV--AWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPS--------------------- 116 (345)
T ss_dssp CSSCEEEE--EECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTT---------------------
T ss_pred cCCcEEEE--EECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCC---------------------
Confidence 45678655 999999999999999999999998774 56778888777776666665
Q ss_pred cccccCCcEEEEEECCCcEEEEEcCCCeE--EEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCc--eeEEE
Q 007234 80 KKRKLGSSLLVLGTGGGDVLALAVSAGQL--KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS--LLGKF 155 (612)
Q Consensus 80 ~~~~~~~~~l~~gs~~g~I~vwd~~~~~~--~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~--~~~~~ 155 (612)
+++|++|+.||.|++||+.++.. ......+|...|.+++|+|++++|++|+.|++|++||..+++ +..++
T Consensus 117 ------~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~ 190 (345)
T 3fm0_A 117 ------GNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATL 190 (345)
T ss_dssp ------SSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEE
T ss_pred ------CCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEe
Confidence 88999999999999999987642 223346899999999999999999999999999999998875 45678
Q ss_pred ecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCC---------------eeEEEEec-CCCCEEEEEEeeCCcEEEEE
Q 007234 156 RASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDH---------------KKMQKFSG-HPGAVRFMTFSDNGKYVLSS 217 (612)
Q Consensus 156 ~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~---------------~~~~~~~~-h~~~v~~l~~sp~~~~l~s~ 217 (612)
.+|...|.+++|+|+|++|++++ ++|++||.... +++..+.+ |...|.+++|+|++..++++
T Consensus 191 ~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~ 270 (345)
T 3fm0_A 191 EGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATA 270 (345)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEE
T ss_pred cCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEE
Confidence 89999999999999999999998 89999996321 33455655 88999999999999999998
Q ss_pred EcCCCeEEEEEcCCCccccc-ee---eEeecCCceeEEeEEecCCccCCCC-cEEEEEecCCcEEEEECCCcceec
Q 007234 218 AVGERYIALWRTDGVKKQSA-SC---VLAMEHPAVFMDCRCIDNGGVDDAG-LYVLAISETGVCYIWYGQNIEELR 288 (612)
Q Consensus 218 s~~d~~i~vwd~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~t~s~dg~i~iwd~~~~~~~~ 288 (612)
+ .|+.|++|+......... .. ......+...+.++.|+ |++ .+|++++.||.|++|+..+.+.+.
T Consensus 271 ~-~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~-----p~~~~~laS~s~Dg~v~~W~~~~~~~~~ 340 (345)
T 3fm0_A 271 C-GDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWN-----PKEPGLLASCSDDGEVAFWKYQRPEGLH 340 (345)
T ss_dssp E-TTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEEC-----SSSTTEEEEEETTSCEEEEEECC-----
T ss_pred e-CCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEe-----CCCceEEEEcCCCCcEEEEEecCCCCcc
Confidence 8 799999999876542211 01 11123455667788887 877 599999999999999998877654
No 61
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.8e-32 Score=273.41 Aligned_cols=242 Identities=11% Similarity=0.124 Sum_probs=189.2
Q ss_pred CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCC-------CcEEEEeeccCCccccccccccccccccccceeEEEee
Q 007234 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLK-------GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWL 74 (612)
Q Consensus 2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~-------~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~ 74 (612)
+..+|+++ +|+|++++||+|+.|++|+|||... .+.+..+.+|...+.++.|+++
T Consensus 57 h~~~v~~v--~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~---------------- 118 (330)
T 2hes_X 57 HKKAIRSV--AWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSND---------------- 118 (330)
T ss_dssp CCSCEEEE--EECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTT----------------
T ss_pred ccCCEEEE--EECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCC----------------
Confidence 45678655 9999999999999999999999853 3566677777776666666655
Q ss_pred ecccccccccCCcEEEEEECCCcEEEEEcCCC----eEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCC-
Q 007234 75 SVDRKKKRKLGSSLLVLGTGGGDVLALAVSAG----QLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG- 149 (612)
Q Consensus 75 ~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~----~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~- 149 (612)
+.+|++|+.||.|++||+... +++..+ .+|...|.+++|+|++.+|++|+.|++|++||..++
T Consensus 119 -----------g~~las~s~D~~v~iwd~~~~~~~~~~~~~~-~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~ 186 (330)
T 2hes_X 119 -----------GYYLATCSRDKSVWIWETDESGEEYECISVL-QEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDD 186 (330)
T ss_dssp -----------SCEEEEEETTSCEEEEECCTTCCCCEEEEEE-CCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTE
T ss_pred -----------CCEEEEEeCCCEEEEEeccCCCCCeEEEEEe-ccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCC
Confidence 889999999999999999432 344344 689999999999999999999999999999998776
Q ss_pred -ceeEEEecCCCCeeEEEECCC--CCEEEEeC--CeEEEEEcCCC--------eeEEEEec-CCCCEEEEEEeeCCcEEE
Q 007234 150 -SLLGKFRASTKGISCMAVSSD--GKMLATAA--GQLKTFNCSDH--------KKMQKFSG-HPGAVRFMTFSDNGKYVL 215 (612)
Q Consensus 150 -~~~~~~~~~~~~v~~l~~spd--g~~l~~~~--g~i~lwd~~~~--------~~~~~~~~-h~~~v~~l~~sp~~~~l~ 215 (612)
+++..+.+|...|.+++|+|+ +.+|++++ ++|++||+.++ .....+.+ |...|.+++|++++ +++
T Consensus 187 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~ 265 (330)
T 2hes_X 187 WECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIA 265 (330)
T ss_dssp EEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEE
T ss_pred eeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEE
Confidence 678889999999999999998 77888887 89999998754 34455555 99999999999766 688
Q ss_pred EEEcCCCeEEEEEcCCCccccceeeEe--ecCCceeEEeEEecCCccCC--CCcEEEEEecCCcEEEEECCC
Q 007234 216 SSAVGERYIALWRTDGVKKQSASCVLA--MEHPAVFMDCRCIDNGGVDD--AGLYVLAISETGVCYIWYGQN 283 (612)
Q Consensus 216 s~s~~d~~i~vwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~l~t~s~dg~i~iwd~~~ 283 (612)
+++ .|+.|++|+..++... .... ..|....+..+.|+ | ++.+|++++.||.|++||+++
T Consensus 266 s~~-~dg~v~iw~~~~~~~~---~~~~~~~~h~~~~v~~v~~~-----~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 266 SVG-ADGVLAVYEEVDGEWK---VFAKRALCHGVYEINVVKWL-----ELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EEE-TTSCEEEEEEETTEEE---EEEEESCTTTTSCEEEEEEC----------CCEEEEETTSEEEEEEC--
T ss_pred EEe-CCCEEEEEEcCCCceE---EEeccccccccceEEEEEEe-----cCCCceEEEEecCCCcEEEEEecc
Confidence 887 7999999998876421 1111 23444356777786 6 789999999999999999764
No 62
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=2.9e-31 Score=271.11 Aligned_cols=242 Identities=14% Similarity=0.177 Sum_probs=198.5
Q ss_pred CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (612)
Q Consensus 2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (612)
+..+|.++ +|+|++.++++|+.||+|++||+.+++.+..+.+|...+.++.|+++
T Consensus 75 h~~~V~~~--~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~----------------------- 129 (343)
T 2xzm_R 75 HNHFVSDL--ALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPD----------------------- 129 (343)
T ss_dssp CSSCEEEE--EECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSS-----------------------
T ss_pred CCCceEEE--EECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCC-----------------------
Confidence 35677555 99999999999999999999999999999999988887777777766
Q ss_pred cccCCcEEEEEECCCcEEEEEcCCCeEEEEec--cCCCCCeEEEEEecCC----------CEEEEEecCCcEEEEECCCC
Q 007234 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLS--DCHPGGVSAISFATHG----------SCIYSAGADGMVCEIDPLTG 149 (612)
Q Consensus 82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~--~~h~~~V~~l~~sp~~----------~~l~s~s~dg~v~iwd~~~~ 149 (612)
+.++++|+.||.|++||+...... ... .+|...|.+++|+|++ .+|++++.|++|++|| ..+
T Consensus 130 ----~~~l~s~~~d~~i~~wd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~ 203 (343)
T 2xzm_R 130 ----NRQILSAGAEREIKLWNILGECKF-SSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNF 203 (343)
T ss_dssp ----TTEEEEEETTSCEEEEESSSCEEE-ECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTT
T ss_pred ----CCEEEEEcCCCEEEEEeccCCcee-eeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCC
Confidence 889999999999999999854332 322 3688999999999987 7899999999999999 567
Q ss_pred ceeEEEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCC-CeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEE
Q 007234 150 SLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSD-HKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIAL 226 (612)
Q Consensus 150 ~~~~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~-~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~v 226 (612)
+....+.+|...|.+++|+|+|++|++|+ |.|++||+.+ ......+ .+...|.+++|+|++.+++++ .|+.|++
T Consensus 204 ~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~-~~~~~v~~v~~sp~~~~la~~--~d~~v~i 280 (343)
T 2xzm_R 204 QIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREF-DAGSTINQIAFNPKLQWVAVG--TDQGVKI 280 (343)
T ss_dssp EEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEE-ECSSCEEEEEECSSSCEEEEE--ESSCEEE
T ss_pred ceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceee-cCCCcEEEEEECCCCCEEEEE--CCCCEEE
Confidence 77888999999999999999999999998 8999999954 4444444 356679999999999877654 4788999
Q ss_pred EEcCCCccccceeeEeec-----------CCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcc
Q 007234 227 WRTDGVKKQSASCVLAME-----------HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE 285 (612)
Q Consensus 227 wd~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~ 285 (612)
|++.+++.. .+..+. .+...+..++|+ |+|.+|++|+.||.|++|+++++.
T Consensus 281 w~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-----p~g~~l~sg~~Dg~v~~w~~~~g~ 342 (343)
T 2xzm_R 281 FNLMTQSKA---PVCTIEAEPITKAEGQKGKNPQCTSLAWN-----ALGKKLFAGFTDGVIRTFSFETSA 342 (343)
T ss_dssp EESSSCCSC---SEEECCCCSGGGBTTBCCSCCCEEEEEEC-----SSSCCEEEEETTSEEEEEEEEEEE
T ss_pred EEeCCCCCC---ceEEeecCcchhhhhhcCCCCceEEEEEC-----CCCCeEEEecCCceEEEEEEEccC
Confidence 999876543 111111 233445677887 999999999999999999987654
No 63
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=5.2e-32 Score=278.18 Aligned_cols=240 Identities=12% Similarity=0.105 Sum_probs=187.7
Q ss_pred CcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEE----eeccCCccccccccccccccccccceeEEEeeeccc
Q 007234 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTE----FADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDR 78 (612)
Q Consensus 3 s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~----~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~ 78 (612)
...|.+ ++|+|++.++ +++.||+|+|||+.+++.... ..+|...+.++.|+++
T Consensus 94 ~~~V~~--~~~s~d~~~l-~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spd-------------------- 150 (357)
T 4g56_B 94 EAGVTD--VAWVSEKGIL-VASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSD-------------------- 150 (357)
T ss_dssp SSCEEE--EEEETTTEEE-EEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSS--------------------
T ss_pred CCCEEE--EEEcCCCCEE-EEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCC--------------------
Confidence 345754 4999998654 677899999999998875432 2244444444444444
Q ss_pred ccccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCC-EEEEEecCCcEEEEECCCCceeEEEe-
Q 007234 79 KKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTGSLLGKFR- 156 (612)
Q Consensus 79 ~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~-~l~s~s~dg~v~iwd~~~~~~~~~~~- 156 (612)
+++|++|+.||.|++||+.+++.+..+ .+|...|++++|+|++. .+++++.||+|++||++++++...+.
T Consensus 151 -------g~~l~sgs~dg~v~iwd~~~~~~~~~~-~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~ 222 (357)
T 4g56_B 151 -------GTQAVSGGKDFSVKVWDLSQKAVLKSY-NAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDF 222 (357)
T ss_dssp -------SSEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCC
T ss_pred -------CCEEEEEeCCCeEEEEECCCCcEEEEE-cCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeee
Confidence 789999999999999999999998777 67999999999999875 68999999999999999998776654
Q ss_pred -cCCCCeeEEEECCCC-CEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCc-EEEEEEcCCCeEEEEEcCC
Q 007234 157 -ASTKGISCMAVSSDG-KMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGK-YVLSSAVGERYIALWRTDG 231 (612)
Q Consensus 157 -~~~~~v~~l~~spdg-~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~-~l~s~s~~d~~i~vwd~~~ 231 (612)
.+...+.+++|+|++ .++++|+ +.|++||+++++.+..+.+|...|++++|+|++. +|++++ .|++|++||+++
T Consensus 223 ~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs-~D~~i~iwd~~~ 301 (357)
T 4g56_B 223 CASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASIS-EDCTVAVLDADF 301 (357)
T ss_dssp TTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEE-TTSCEEEECTTS
T ss_pred ccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEe-CCCEEEEEECCC
Confidence 355689999999974 6787776 8999999999999999999999999999999874 677776 799999999988
Q ss_pred CccccceeeEeecCCceeEEeEEecCCccCC-CCcEEEEEecCCcEEEEECCCcc
Q 007234 232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDD-AGLYVLAISETGVCYIWYGQNIE 285 (612)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~t~s~dg~i~iwd~~~~~ 285 (612)
++.. ..+.| ...+..++|+ | ++.+|++++.||+|++|++.+..
T Consensus 302 ~~~~-----~~~~H-~~~V~~vafs-----P~d~~~l~s~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 302 SEVF-----RDLSH-RDFVTGVAWS-----PLDHSKFTTVGWDHKVLHHHLPSEG 345 (357)
T ss_dssp CEEE-----EECCC-SSCEEEEEEC-----SSSTTEEEEEETTSCEEEEECC---
T ss_pred CcEe-----EECCC-CCCEEEEEEe-----CCCCCEEEEEcCCCeEEEEECCCCC
Confidence 7633 33444 4456777887 7 78999999999999999986543
No 64
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.4e-31 Score=277.64 Aligned_cols=245 Identities=17% Similarity=0.224 Sum_probs=203.0
Q ss_pred CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCc-------EEEEeeccCCccccccccccccccccccceeEEEee
Q 007234 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ-------VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWL 74 (612)
Q Consensus 2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~-------~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~ 74 (612)
+...|..+ +|+|+|++||+|+.|+.+++||+.+.. ....+.+|.+.+.++.|.++
T Consensus 107 h~~~v~~~--~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~---------------- 168 (380)
T 3iz6_a 107 HCPWVMEC--AFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPD---------------- 168 (380)
T ss_dssp CCTTCCCC--EECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSS----------------
T ss_pred CCCCEEEE--EECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecC----------------
Confidence 34567555 999999999999999999999987542 23345556655555555443
Q ss_pred ecccccccccCCcEEEEEECCCcEEEEEcCCCeEEEEec----cCCCCCeEEEEEec-CCCEEEEEecCCcEEEEECC-C
Q 007234 75 SVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLS----DCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPL-T 148 (612)
Q Consensus 75 ~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~----~~h~~~V~~l~~sp-~~~~l~s~s~dg~v~iwd~~-~ 148 (612)
+ +..+++|+.||.|++||+.+++.+..+. .+|...|.+++|++ ++++|++|+.|++|++||++ .
T Consensus 169 --~--------~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~ 238 (380)
T 3iz6_a 169 --Q--------ETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRIT 238 (380)
T ss_dssp --S--------SSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTT
T ss_pred --C--------CCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCC
Confidence 2 4569999999999999999999876552 57999999999987 88999999999999999998 5
Q ss_pred CceeEEEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCC-------CEEEEEEeeCCcEEEEEEc
Q 007234 149 GSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPG-------AVRFMTFSDNGKYVLSSAV 219 (612)
Q Consensus 149 ~~~~~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~-------~v~~l~~sp~~~~l~s~s~ 219 (612)
++.+..+.+|...|.+++|+|++++|++++ |+|++||+++++.+..+..+.. .|.+++|+|+|+++++++
T Consensus 239 ~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~- 317 (380)
T 3iz6_a 239 SRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGY- 317 (380)
T ss_dssp CCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEEC-
T ss_pred CcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEE-
Confidence 578889999999999999999999999998 8999999999999888865432 488999999999999987
Q ss_pred CCCeEEEEEcCCCccccceeeEee----cCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcc
Q 007234 220 GERYIALWRTDGVKKQSASCVLAM----EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE 285 (612)
Q Consensus 220 ~d~~i~vwd~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~ 285 (612)
.||.|++||+..++.. ..+ ..+...+.++.|+ |+|.+|++|+.||+|++|++...+
T Consensus 318 ~dg~i~vwd~~~~~~~-----~~~~~~~~~h~~~v~~l~~s-----~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 318 SNGDCYVWDTLLAEMV-----LNLGTLQNSHEGRISCLGLS-----SDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp TTSCEEEEETTTCCEE-----EEECCSCSSCCCCCCEEEEC-----SSSSEEEEECTTSCEEEEECCSSS
T ss_pred CCCCEEEEECCCCceE-----EEEecccCCCCCceEEEEEC-----CCCCEEEEeeCCCCEEEEecCCCc
Confidence 7999999999887643 222 3455567788887 999999999999999999987654
No 65
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=2.7e-32 Score=275.44 Aligned_cols=246 Identities=15% Similarity=0.176 Sum_probs=195.3
Q ss_pred CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCc--EEEEeeccCCccccccccccccccccccceeEEEeeecccc
Q 007234 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ--VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK 79 (612)
Q Consensus 2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~ 79 (612)
|..+|+++ +|+|+|++||+|+.|++|+|||+.++. .+..+.+|...|.++.|+++ .+
T Consensus 12 H~~~V~~v--~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~-----------------~~-- 70 (316)
T 3bg1_A 12 HEDMIHDA--QMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHP-----------------MY-- 70 (316)
T ss_dssp --CCEEEE--EECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCG-----------------GG--
T ss_pred ccCeEEEe--eEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCC-----------------CC--
Confidence 46788655 999999999999999999999998875 46678877776665555432 11
Q ss_pred cccccCCcEEEEEECCCcEEEEEcCCCe--EEEEeccCCCCCeEEEEEecC--CCEEEEEecCCcEEEEECCCCce---e
Q 007234 80 KKRKLGSSLLVLGTGGGDVLALAVSAGQ--LKWRLSDCHPGGVSAISFATH--GSCIYSAGADGMVCEIDPLTGSL---L 152 (612)
Q Consensus 80 ~~~~~~~~~l~~gs~~g~I~vwd~~~~~--~~~~~~~~h~~~V~~l~~sp~--~~~l~s~s~dg~v~iwd~~~~~~---~ 152 (612)
+.+|++|+.||+|++||+.++. ....+ .+|...|++++|+|+ +.+|++|+.|++|++||+..+.. .
T Consensus 71 ------~~~l~s~s~D~~v~iWd~~~~~~~~~~~~-~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~ 143 (316)
T 3bg1_A 71 ------GNILASCSYDRKVIIWREENGTWEKSHEH-AGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVK 143 (316)
T ss_dssp ------SSCEEEEETTSCEEEECCSSSCCCEEEEE-CCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEEC
T ss_pred ------CCEEEEEECCCEEEEEECCCCcceEEEEc-cCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCccee
Confidence 6789999999999999999874 34344 679999999999997 78999999999999999987632 3
Q ss_pred EEEecCCCCeeEEEECCC-----------------CCEEEEeC--CeEEEEEcCCC---eeEEEEecCCCCEEEEEEeeC
Q 007234 153 GKFRASTKGISCMAVSSD-----------------GKMLATAA--GQLKTFNCSDH---KKMQKFSGHPGAVRFMTFSDN 210 (612)
Q Consensus 153 ~~~~~~~~~v~~l~~spd-----------------g~~l~~~~--g~i~lwd~~~~---~~~~~~~~h~~~v~~l~~sp~ 210 (612)
..+.+|...+.+++|+|+ +++|++|+ +.|++||++.+ +++..+.+|...|.+++|+|+
T Consensus 144 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~ 223 (316)
T 3bg1_A 144 KINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPS 223 (316)
T ss_dssp CBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCC
T ss_pred eeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCC
Confidence 445678889999999997 46888887 89999999765 467788999999999999998
Q ss_pred C----cEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECC
Q 007234 211 G----KYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (612)
Q Consensus 211 ~----~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~ 282 (612)
+ .+|++++ .|++|++|++.+........ ..+..+...+..+.|+ |++.+|++++.||.|++|+..
T Consensus 224 ~~~~~~~las~s-~D~~v~iw~~~~~~~~~~~~-~~~~~~~~~v~~v~~s-----p~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 224 IGLPTSTIASCS-QDGRVFIWTCDDASSNTWSP-KLLHKFNDVVWHVSWS-----ITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp SSCSCCEEEEEE-TTCEEEEEECSSTTCCCCBC-CEEEECSSCEEEEEEC-----TTTCCEEEEESSSCEEEEEEC
T ss_pred CCCCCceEEEEc-CCCeEEEEEccCccccchhh-hhhhcCCCcEEEEEEc-----CCCCEEEEEcCCCeEEEEEEC
Confidence 6 7889887 79999999998632110001 1112234455677787 999999999999999999965
No 66
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=1.4e-30 Score=262.00 Aligned_cols=270 Identities=15% Similarity=0.226 Sum_probs=216.0
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeec--cCCccccccccccccccccccceeEEEeeecccccccccCCcE
Q 007234 11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFAD--IASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (612)
Q Consensus 11 ~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (612)
++|||++ +||+|. |++|+|||+.+|++++.+.. |...|.++.|+++ +++
T Consensus 31 l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~---------------------------~~~ 81 (318)
T 4ggc_A 31 VDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKE---------------------------GNY 81 (318)
T ss_dssp EEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTT---------------------------SSE
T ss_pred EEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCC---------------------------CCE
Confidence 5999987 777765 99999999999999887763 3333444444444 889
Q ss_pred EEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCC-ceeEEEecCCCCeeEEEE
Q 007234 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG-SLLGKFRASTKGISCMAV 167 (612)
Q Consensus 89 l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~-~~~~~~~~~~~~v~~l~~ 167 (612)
+++|+.||.|++||+.+++.+..+ .+|...+.++.+ ++..+++++.++.+++|+...+ ..+..+.+|...+.++.+
T Consensus 82 l~sgs~Dg~v~iw~~~~~~~~~~~-~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (318)
T 4ggc_A 82 LAVGTSSAEVQLWDVQQQKRLRNM-TSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRW 158 (318)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEE-ECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEE
T ss_pred EEEEECCCcEEEeecCCceeEEEe-cCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEE
Confidence 999999999999999999998776 579988887655 5678999999999999998766 456778889999999999
Q ss_pred CCCCCEEEEeC--CeEEEEEcCCCee----EEEEecCCCCEEEEEEeeCCcEEE--EEEcCCCeEEEEEcCCCcccccee
Q 007234 168 SSDGKMLATAA--GQLKTFNCSDHKK----MQKFSGHPGAVRFMTFSDNGKYVL--SSAVGERYIALWRTDGVKKQSASC 239 (612)
Q Consensus 168 spdg~~l~~~~--g~i~lwd~~~~~~----~~~~~~h~~~v~~l~~sp~~~~l~--s~s~~d~~i~vwd~~~~~~~~~~~ 239 (612)
+++++++++++ |.|++||+++++. ......|.+.|.++.++|++..++ .+++.++.|++||.......
T Consensus 159 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~---- 234 (318)
T 4ggc_A 159 APDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL---- 234 (318)
T ss_dssp CTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEE----
T ss_pred cCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccc----
Confidence 99999999988 8999999987653 455677889999999999776443 23446899999999887643
Q ss_pred eEeecCCceeEEeEEecCCccCCCCcEEEEEe--cCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhcc
Q 007234 240 VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS--ETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAA 317 (612)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~ 317 (612)
....+... +....+. +++..+++++ .||.|++||+.+++.+.
T Consensus 235 -~~~~~~~~-v~~~~~~-----~~~~~~~~~sg~~d~~i~iwd~~~~~~~~----------------------------- 278 (318)
T 4ggc_A 235 -SAVDAHSQ-VCSILWS-----PHYKELISGHGFAQNQLVIWKYPTMAKVA----------------------------- 278 (318)
T ss_dssp -EEEECSSC-EEEEEEE-----TTTTEEEEEECTTTCCEEEEETTTCCEEE-----------------------------
T ss_pred -ccccceee-eeeeeec-----ccccceEEEEEcCCCEEEEEECCCCcEEE-----------------------------
Confidence 23333333 3445565 7777777665 79999999987765432
Q ss_pred cccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceee
Q 007234 318 KLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (612)
Q Consensus 318 ~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~ 379 (612)
++.+|.+.|.+++|+|||++| +|||.|+++++|++
T Consensus 279 --------------------------~l~gH~~~V~~l~~spdg~~l-~S~s~D~~v~iWd~ 313 (318)
T 4ggc_A 279 --------------------------ELKGHTSRVLSLTMSPDGATV-ASAAADETLRLWRC 313 (318)
T ss_dssp --------------------------EECCCSSCEEEEEECTTSSCE-EEEETTTEEEEECC
T ss_pred --------------------------EEcCCCCCEEEEEEcCCCCEE-EEEecCCeEEEEEC
Confidence 455788899999999999999 99999999999987
No 67
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-31 Score=281.28 Aligned_cols=246 Identities=13% Similarity=0.176 Sum_probs=205.3
Q ss_pred CcccceeEEEEcCCCCEEEEEeCCCcEEEEECCC----CcEEEEeeccCCccccccccccccccccccceeEEEeeeccc
Q 007234 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLK----GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDR 78 (612)
Q Consensus 3 s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~----~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~ 78 (612)
.++|+++ +|+|++++||+|+.||.|++||+.+ .+.+..+.+|...+.++.|++ .+
T Consensus 67 ~~~v~~~--~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~------------------~~- 125 (416)
T 2pm9_A 67 DSKFNDL--DWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNA------------------KQ- 125 (416)
T ss_dssp SSCEEEE--EECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECS------------------SS-
T ss_pred CCceEEE--EECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcC------------------CC-
Confidence 4567545 9999999999999999999999987 457777777766655555444 32
Q ss_pred ccccccCCcEEEEEECCCcEEEEEcCCCe------EEEEe--ccCCCCCeEEEEEecC-CCEEEEEecCCcEEEEECCCC
Q 007234 79 KKKRKLGSSLLVLGTGGGDVLALAVSAGQ------LKWRL--SDCHPGGVSAISFATH-GSCIYSAGADGMVCEIDPLTG 149 (612)
Q Consensus 79 ~~~~~~~~~~l~~gs~~g~I~vwd~~~~~------~~~~~--~~~h~~~V~~l~~sp~-~~~l~s~s~dg~v~iwd~~~~ 149 (612)
+.++++|+.||.|++||+.+++ ....+ ..+|...|.+++|+|+ +..|++++.||.|++||++++
T Consensus 126 -------~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~ 198 (416)
T 2pm9_A 126 -------DNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAK 198 (416)
T ss_dssp -------TTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTT
T ss_pred -------CCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCC
Confidence 5789999999999999999886 32222 3568999999999998 789999999999999999999
Q ss_pred ceeEEEecC------CCCeeEEEECCCC-CEEEEeC--C---eEEEEEcCCC-eeEEEEe-cCCCCEEEEEEee-CCcEE
Q 007234 150 SLLGKFRAS------TKGISCMAVSSDG-KMLATAA--G---QLKTFNCSDH-KKMQKFS-GHPGAVRFMTFSD-NGKYV 214 (612)
Q Consensus 150 ~~~~~~~~~------~~~v~~l~~spdg-~~l~~~~--g---~i~lwd~~~~-~~~~~~~-~h~~~v~~l~~sp-~~~~l 214 (612)
+.+..+..+ ...+.+++|+|++ .++++++ + .|++||++++ +++..+. +|...|.+++|+| ++++|
T Consensus 199 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l 278 (416)
T 2pm9_A 199 KEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLL 278 (416)
T ss_dssp EEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCE
T ss_pred CcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeE
Confidence 999998876 6789999999997 5788777 5 9999999986 6777788 8999999999999 89999
Q ss_pred EEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCC-cEEEEEecCCcEEEEECCCccee
Q 007234 215 LSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAG-LYVLAISETGVCYIWYGQNIEEL 287 (612)
Q Consensus 215 ~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~t~s~dg~i~iwd~~~~~~~ 287 (612)
++++ .|+.|++||+.+++.. ..+..+...+..+.|+ |++ .+|++++.||.|++||+.++...
T Consensus 279 ~s~~-~dg~v~~wd~~~~~~~-----~~~~~~~~~v~~~~~s-----~~~~~~l~s~~~d~~i~iw~~~~~~~~ 341 (416)
T 2pm9_A 279 LSSG-RDNTVLLWNPESAEQL-----SQFPARGNWCFKTKFA-----PEAPDLFACASFDNKIEVQTLQNLTNT 341 (416)
T ss_dssp EEEE-SSSEEEEECSSSCCEE-----EEEECSSSCCCCEEEC-----TTCTTEEEECCSSSEEEEEESCCCCCS
T ss_pred EEEe-CCCCEEEeeCCCCccc-----eeecCCCCceEEEEEC-----CCCCCEEEEEecCCcEEEEEccCCCCC
Confidence 9987 7999999999987633 4455555566777887 888 89999999999999999877643
No 68
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.7e-30 Score=261.46 Aligned_cols=240 Identities=21% Similarity=0.343 Sum_probs=204.1
Q ss_pred CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (612)
Q Consensus 2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (612)
+..+|..+ +|+|++++|++|+.||.|++||+.+++++..+.+|...+.++.|+++
T Consensus 64 h~~~v~~~--~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~----------------------- 118 (312)
T 4ery_A 64 HKLGISDV--AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ----------------------- 118 (312)
T ss_dssp CSSCEEEE--EECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSS-----------------------
T ss_pred CCCceEEE--EEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCC-----------------------
Confidence 34567555 99999999999999999999999999999999888776666666555
Q ss_pred cccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEec-CCC
Q 007234 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA-STK 160 (612)
Q Consensus 82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~-~~~ 160 (612)
+.++++|+.||.|++||+.+++.+..+ ..|..+|.+++|+|++++|++++.||.|++||+.+++.+..+.. +..
T Consensus 119 ----~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~ 193 (312)
T 4ery_A 119 ----SNLIVSGSFDESVRIWDVKTGKCLKTL-PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 193 (312)
T ss_dssp ----SSEEEEEETTSCEEEEETTTCCEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCC
T ss_pred ----CCEEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCC
Confidence 789999999999999999999988776 57999999999999999999999999999999999998887654 456
Q ss_pred CeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEE--EEEe-eCCcEEEEEEcCCCeEEEEEcCCCccc
Q 007234 161 GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRF--MTFS-DNGKYVLSSAVGERYIALWRTDGVKKQ 235 (612)
Q Consensus 161 ~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~--l~~s-p~~~~l~s~s~~d~~i~vwd~~~~~~~ 235 (612)
.+.+++|+|+++++++++ |.|++||+++++.+..+.+|...+.+ ..++ +++.++++++ .|+.|++||+.+++.
T Consensus 194 ~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~-~dg~i~vwd~~~~~~- 271 (312)
T 4ery_A 194 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS-EDNLVYIWNLQTKEI- 271 (312)
T ss_dssp CEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECC-TTSCEEEEETTTCCE-
T ss_pred ceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEEC-CCCEEEEEECCCchh-
Confidence 899999999999999988 89999999999999999988765433 2344 6778888876 799999999988763
Q ss_pred cceeeEeecCCceeEEeEEecCCccCCCCcEEEEEe--cCCcEEEEECC
Q 007234 236 SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS--ETGVCYIWYGQ 282 (612)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s--~dg~i~iwd~~ 282 (612)
+..+..+...+..+.++ |++.++++++ .||.|++|+.+
T Consensus 272 ----~~~~~~h~~~v~~~~~~-----p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 272 ----VQKLQGHTDVVISTACH-----PTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp ----EEEECCCSSCEEEEEEC-----SSSSEEEEEECTTTCCEEEEECC
T ss_pred ----hhhhhccCCcEEEEeec-----CcCCceEEEEccCCccEEEecCC
Confidence 34555555666677787 9999999997 59999999854
No 69
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=5.8e-31 Score=300.24 Aligned_cols=244 Identities=14% Similarity=0.136 Sum_probs=207.6
Q ss_pred CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (612)
Q Consensus 2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (612)
+.++|+++ +|+|+|++||+|+.||.|+|||+.+++.+..+.+|.+.+.++.|+++
T Consensus 54 ~~~~v~~~--~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~----------------------- 108 (814)
T 3mkq_A 54 TETPVRAG--KFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPT----------------------- 108 (814)
T ss_dssp CSSCEEEE--EEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSS-----------------------
T ss_pred CCCcEEEE--EEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCC-----------------------
Confidence 45678655 99999999999999999999999999999999888777776666665
Q ss_pred cccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEec-CCCEEEEEecCCcEEEEECCCCceeEEEecCC-
Q 007234 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKFRAST- 159 (612)
Q Consensus 82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~- 159 (612)
+.++++|+.||.|++||+.++........+|...|.+++|+| ++..|++++.||+|++||+.+++....+..+.
T Consensus 109 ----~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~ 184 (814)
T 3mkq_A 109 ----KPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQE 184 (814)
T ss_dssp ----SSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCT
T ss_pred ----CCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCC
Confidence 788999999999999999988444445568999999999999 88899999999999999999988888877665
Q ss_pred CCeeEEEECC--CCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccc
Q 007234 160 KGISCMAVSS--DGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ 235 (612)
Q Consensus 160 ~~v~~l~~sp--dg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~ 235 (612)
..+.+++|+| ++.++++++ |.|++||+++++.+..+.+|...|.+++|+|+++++++++ .||.|++||+.+++..
T Consensus 185 ~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~v~vwd~~~~~~~ 263 (814)
T 3mkq_A 185 RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGS-EDGTLKIWNSSTYKVE 263 (814)
T ss_dssp TCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEE-TTSCEEEEETTTCSEE
T ss_pred CCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCcEE
Confidence 7899999999 999999998 8999999999999999999999999999999999999987 7999999999987643
Q ss_pred cceeeEeecCCceeEEeEEecCCccCCCCcE-EEEEecCCcEEEEECCCcc
Q 007234 236 SASCVLAMEHPAVFMDCRCIDNGGVDDAGLY-VLAISETGVCYIWYGQNIE 285 (612)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~t~s~dg~i~iwd~~~~~ 285 (612)
..+..+...+..+.++ |++.. +++++.++.+.+|++....
T Consensus 264 -----~~~~~~~~~v~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (814)
T 3mkq_A 264 -----KTLNVGLERSWCIATH-----PTGRKNYIASGFDNGFTVLSLGNDE 304 (814)
T ss_dssp -----EEECCSSSSEEEEEEC-----TTCGGGEEEEEETTEEEEEECSCCS
T ss_pred -----EEeecCCCcEEEEEEc-----cCCCceEEEEEeCCCEEEEEcCCCC
Confidence 4444455566677776 88763 3555557778889876543
No 70
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=1.8e-30 Score=274.23 Aligned_cols=272 Identities=15% Similarity=0.222 Sum_probs=222.6
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEE
Q 007234 12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL 91 (612)
Q Consensus 12 ~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~ 91 (612)
++++|+++|++|+.||.|++||+.+++....+.+|.+.+.++.| + +.++++
T Consensus 138 ~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~---------------------------~~~l~s 188 (435)
T 1p22_A 138 CLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--D---------------------------ERVIIT 188 (435)
T ss_dssp EEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--C---------------------------SSEEEE
T ss_pred EEEECCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--C---------------------------CCEEEE
Confidence 55569999999999999999999999999999877765554433 2 678999
Q ss_pred EECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCcee---EEEecCCCCeeEEEEC
Q 007234 92 GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLL---GKFRASTKGISCMAVS 168 (612)
Q Consensus 92 gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~---~~~~~~~~~v~~l~~s 168 (612)
|+.||.|++||+.+++.+..+ .+|...|.+++|++ ..+++|+.||.|++||+.+++.. ..+.+|...|.+++|
T Consensus 189 g~~dg~i~vwd~~~~~~~~~~-~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~- 264 (435)
T 1p22_A 189 GSSDSTVRVWDVNTGEMLNTL-IHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF- 264 (435)
T ss_dssp EETTSCEEEEESSSCCEEEEE-CCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE-
T ss_pred EcCCCeEEEEECCCCcEEEEE-cCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe-
Confidence 999999999999999998777 57999999999974 58999999999999999988765 667888999999999
Q ss_pred CCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCC
Q 007234 169 SDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP 246 (612)
Q Consensus 169 pdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 246 (612)
+++++++|+ |.|++||+++++.+..+.+|...|.++.|+ +.++++++ .|+.|++||+.+++. +..+..+
T Consensus 265 -~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~-~dg~i~iwd~~~~~~-----~~~~~~h 335 (435)
T 1p22_A 265 -DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGS-SDNTIRLWDIECGAC-----LRVLEGH 335 (435)
T ss_dssp -ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEE-TTSCEEEEETTTCCE-----EEEECCC
T ss_pred -CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEe-CCCeEEEEECCCCCE-----EEEEeCC
Confidence 688999887 899999999999999999999999999984 67889887 799999999998763 3445555
Q ss_pred ceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhcccccceecCC
Q 007234 247 AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPA 326 (612)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~ 326 (612)
...+.++.+ ++.+|++|+.||.|++||+.++..... +.+
T Consensus 336 ~~~v~~~~~-------~~~~l~sg~~dg~i~vwd~~~~~~~~~---------------~~~------------------- 374 (435)
T 1p22_A 336 EELVRCIRF-------DNKRIVSGAYDGKIKVWDLVAALDPRA---------------PAG------------------- 374 (435)
T ss_dssp SSCEEEEEC-------CSSEEEEEETTSCEEEEEHHHHTSTTS---------------CTT-------------------
T ss_pred cCcEEEEEe-------cCCEEEEEeCCCcEEEEECCCCCCccc---------------ccc-------------------
Confidence 555555554 578999999999999999866542110 000
Q ss_pred CceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceeeec
Q 007234 327 SVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN 381 (612)
Q Consensus 327 ~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~~~ 381 (612)
......+..|...|.+++| ||.+| ++++.|+++++|++.+
T Consensus 375 ------------~~~~~~~~~h~~~v~~l~~--~~~~l-~s~s~Dg~i~iwd~~~ 414 (435)
T 1p22_A 375 ------------TLCLRTLVEHSGRVFRLQF--DEFQI-VSSSHDDTILIWDFLN 414 (435)
T ss_dssp ------------TTEEEEECCCSSCCCCEEE--CSSCE-EECCSSSEEEEEC---
T ss_pred ------------chheeeccCCCCCeEEEEe--CCCEE-EEEeCCCEEEEEECCC
Confidence 0122356678889999998 88899 9999999999999854
No 71
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=6e-31 Score=276.04 Aligned_cols=236 Identities=14% Similarity=0.143 Sum_probs=199.9
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEE
Q 007234 11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV 90 (612)
Q Consensus 11 ~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~ 90 (612)
..|+|+|++||+|+.||.|++||+.+++....+.+|...+.++.|+++ +.+++
T Consensus 103 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~---------------------------~~~l~ 155 (420)
T 3vl1_A 103 DTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPS---------------------------GEALI 155 (420)
T ss_dssp EEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTT---------------------------SSEEE
T ss_pred EEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCC---------------------------CCEEE
Confidence 478999999999999999999999999998888777777666666655 78999
Q ss_pred EEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecC---CCCee----
Q 007234 91 LGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS---TKGIS---- 163 (612)
Q Consensus 91 ~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~---~~~v~---- 163 (612)
+|+.||.|++||+.+++.+..+ .+|...|++++|+|+++.|++++.|++|++||+++++.+..+..+ ...+.
T Consensus 156 s~s~d~~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~ 234 (420)
T 3vl1_A 156 SSSQDMQLKIWSVKDGSNPRTL-IGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIAL 234 (420)
T ss_dssp EEETTSEEEEEETTTCCCCEEE-ECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEE
T ss_pred EEeCCCeEEEEeCCCCcCceEE-cCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEE
Confidence 9999999999999999888666 579999999999999999999999999999999999999988753 23444
Q ss_pred -----------------EEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEe-cCCCCEEEEEEeeCCc-EEEEEEcCCC
Q 007234 164 -----------------CMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS-GHPGAVRFMTFSDNGK-YVLSSAVGER 222 (612)
Q Consensus 164 -----------------~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~-~h~~~v~~l~~sp~~~-~l~s~s~~d~ 222 (612)
+++|+|+++++++++ |.|++||+++++.+..+. +|...|.+++|+|++. ++++++ .|+
T Consensus 235 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~-~dg 313 (420)
T 3vl1_A 235 FVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGY-ENG 313 (420)
T ss_dssp EECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEE-TTS
T ss_pred ecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEe-CCC
Confidence 455578999999988 899999999998877764 5889999999999999 888887 799
Q ss_pred eEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCc
Q 007234 223 YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (612)
Q Consensus 223 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~ 284 (612)
.|++||+.+++.. ......++...+..+.+ +++.+|++++.||.|++|++...
T Consensus 314 ~i~vwd~~~~~~~---~~~~~~~~~~~v~~~~~------~~~~~l~s~~~d~~v~iw~~~~~ 366 (420)
T 3vl1_A 314 MLAQWDLRSPECP---VGEFLINEGTPINNVYF------AAGALFVSSGFDTSIKLDIISDP 366 (420)
T ss_dssp EEEEEETTCTTSC---SEEEEESTTSCEEEEEE------ETTEEEEEETTTEEEEEEEECCT
T ss_pred eEEEEEcCCCcCc---hhhhhccCCCCceEEEe------CCCCEEEEecCCccEEEEeccCC
Confidence 9999999987542 11222345566666766 56789999999999999998774
No 72
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5e-31 Score=276.22 Aligned_cols=276 Identities=11% Similarity=0.130 Sum_probs=228.4
Q ss_pred CcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccc
Q 007234 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (612)
Q Consensus 3 s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (612)
.++|.++ +|+|+|++|++|+.||.|++|| .+++.+..+..|...+.++.|+++
T Consensus 108 ~~~v~~~--~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~------------------------ 160 (425)
T 1r5m_A 108 TNQVTCL--AWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKD------------------------ 160 (425)
T ss_dssp CBCEEEE--EECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTT------------------------
T ss_pred CCceEEE--EEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCC------------------------
Confidence 4477555 9999999999999999999999 678888888877776666655555
Q ss_pred ccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCC---------------eEEEEEecCCCEEEEEecCCcEEEEECC
Q 007234 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGG---------------VSAISFATHGSCIYSAGADGMVCEIDPL 147 (612)
Q Consensus 83 ~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~---------------V~~l~~sp~~~~l~s~s~dg~v~iwd~~ 147 (612)
+.++++++.+|.|++||+.+++.+..+ ..|... +.+++|+|++ .+++++.||.|++||+.
T Consensus 161 ---~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~ 235 (425)
T 1r5m_A 161 ---GTHIISMDVENVTILWNVISGTVMQHF-ELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQIT 235 (425)
T ss_dssp ---SSEEEEEETTCCEEEEETTTTEEEEEE-CCC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETT
T ss_pred ---CCEEEEEecCCeEEEEECCCCcEEEEe-eccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcC
Confidence 788999999999999999999988776 345555 9999999975 58899999999999999
Q ss_pred CCceeEEEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEE
Q 007234 148 TGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIA 225 (612)
Q Consensus 148 ~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~ 225 (612)
+++.+..+..|...|.+++|+|+++++++++ |.|++||+++++.+..+.+|...|.+++|+|++ ++++++ .|+.|+
T Consensus 236 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~-~d~~i~ 313 (425)
T 1r5m_A 236 EKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCS-MDGSVR 313 (425)
T ss_dssp CSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEE-TTSEEE
T ss_pred CCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEe-CCCcEE
Confidence 9999999999999999999999999999988 899999999999999999999999999999999 888887 799999
Q ss_pred EEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcc--------------------
Q 007234 226 LWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE-------------------- 285 (612)
Q Consensus 226 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~-------------------- 285 (612)
+||+.+++.. ..+..+...+..+.|+ |++.+|++++.||.|++||+.+++
T Consensus 314 i~d~~~~~~~-----~~~~~~~~~i~~~~~s-----~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (425)
T 1r5m_A 314 LWSLKQNTLL-----ALSIVDGVPIFAGRIS-----QDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIP 383 (425)
T ss_dssp EEETTTTEEE-----EEEECTTCCEEEEEEC-----TTSSEEEEEETTSCEEEEECHHHHC--------------CEECC
T ss_pred EEECCCCcEe-----EecccCCccEEEEEEc-----CCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccch
Confidence 9999887633 3444555566777887 999999999999999999998887
Q ss_pred eecccCCcee--EeecccccCCCCcccchhhhcccccceecCCC
Q 007234 286 ELRNTKATKI--LSSSEDVNSKSQKSATAAIFAAKLQDIVKPAS 327 (612)
Q Consensus 286 ~~~~~~~~~~--~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~ 327 (612)
.+........ .+.+.. ++|+++ .+++++.++.+++|+
T Consensus 384 ~~~~~~~~~~~~~v~~~~-~s~~~~----~l~~~~~dg~i~iw~ 422 (425)
T 1r5m_A 384 LYASYQSSQDNDYIFDLS-WNCAGN----KISVAYSLQEGSVVA 422 (425)
T ss_dssp EEEEECCTTCCCCEEEEE-ECTTSS----EEEEEESSSCCEEEE
T ss_pred hhhhhcCcccCCceEEEE-ccCCCc----eEEEEecCceEEEEe
Confidence 5555544422 333222 677777 777888877666544
No 73
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=1.2e-30 Score=265.04 Aligned_cols=252 Identities=15% Similarity=0.219 Sum_probs=203.9
Q ss_pred CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCC----cEEEEeeccCCccccccccccccccccccceeEEEeeec-
Q 007234 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKG----QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSV- 76 (612)
Q Consensus 2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~----~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~- 76 (612)
|.++|+++ +|+|+|++||+|+.||.|+|||+.++ +....+.+|...+. ++.|.+.
T Consensus 10 H~~~v~~~--~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~------------------~~~~~~~~ 69 (351)
T 3f3f_A 10 HDDLVHDV--VYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIV------------------AIDWASPE 69 (351)
T ss_dssp CSSCEEEE--EECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEE------------------EEEECCGG
T ss_pred cccceeEE--EEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEE------------------EEEEcCCC
Confidence 56788655 99999999999999999999999877 45666666665555 4455443
Q ss_pred ccccccccCCcEEEEEECCCcEEEEEcCCC---------eEEEEeccCCCCCeEEEEEecC--CCEEEEEecCCcEEEEE
Q 007234 77 DRKKKRKLGSSLLVLGTGGGDVLALAVSAG---------QLKWRLSDCHPGGVSAISFATH--GSCIYSAGADGMVCEID 145 (612)
Q Consensus 77 ~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~---------~~~~~~~~~h~~~V~~l~~sp~--~~~l~s~s~dg~v~iwd 145 (612)
+ +.++++|+.||.|++||+.++ +.+..+ .+|...|.+++|+|+ +++|++++.||.|++||
T Consensus 70 d--------~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd 140 (351)
T 3f3f_A 70 Y--------GRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTL-NDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYD 140 (351)
T ss_dssp G--------CSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEE
T ss_pred C--------CCEEEEEcCCCeEEEEecCCCcccccccCcceeeee-cccCCceeEEEEcCCCCCcEEEEecCCCcEEEec
Confidence 2 678999999999999999987 344444 579999999999999 99999999999999999
Q ss_pred CCCCceeEEEe-------------cCCCCeeEEEECCC---CCEEEEeC--CeEEEEEcCCCee--EEEEecCCCCEEEE
Q 007234 146 PLTGSLLGKFR-------------ASTKGISCMAVSSD---GKMLATAA--GQLKTFNCSDHKK--MQKFSGHPGAVRFM 205 (612)
Q Consensus 146 ~~~~~~~~~~~-------------~~~~~v~~l~~spd---g~~l~~~~--g~i~lwd~~~~~~--~~~~~~h~~~v~~l 205 (612)
+++++.+..+. .+...+.+++|+|+ +.++++++ +.+.+|+...++. +..+.+|...|.++
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~ 220 (351)
T 3f3f_A 141 ALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSI 220 (351)
T ss_dssp CSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEE
T ss_pred CCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEE
Confidence 99887654433 46678999999997 88998887 7787777777764 77788999999999
Q ss_pred EEeeCC----cEEEEEEcCCCeEEEEEcCCCccc-----------------------------------------cceee
Q 007234 206 TFSDNG----KYVLSSAVGERYIALWRTDGVKKQ-----------------------------------------SASCV 240 (612)
Q Consensus 206 ~~sp~~----~~l~s~s~~d~~i~vwd~~~~~~~-----------------------------------------~~~~~ 240 (612)
+|+|++ ++|++++ .|+.|++||+..+... ....+
T Consensus 221 ~~~p~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (351)
T 3f3f_A 221 SWAPSIGRWYQLIATGC-KDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELL 299 (351)
T ss_dssp EECCCSSCSSEEEEEEE-TTSCEEEEEEEECC---------------------------------------CCSEEEEEE
T ss_pred EECCCCCCcceEEEEEc-CCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEE
Confidence 999998 7888887 7999999999864211 01234
Q ss_pred EeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceec
Q 007234 241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR 288 (612)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~ 288 (612)
..+..+...+..+.|+ |++++|++++.||.|++|++.+++.+.
T Consensus 300 ~~~~~h~~~v~~~~~s-----~~~~~l~s~~~dg~v~iw~~~~~~~~~ 342 (351)
T 3f3f_A 300 SEHDDHNGEVWSVSWN-----LTGTILSSAGDDGKVRLWKATYSNEFK 342 (351)
T ss_dssp EEECTTSSCEEEEEEC-----SSSCCEEEEETTSCEEEEEECTTSCEE
T ss_pred EEEecccccEEEEEEc-----CCCCEEEEecCCCcEEEEecCcCcchh
Confidence 4455566667788887 999999999999999999999876654
No 74
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=5.1e-31 Score=268.31 Aligned_cols=277 Identities=14% Similarity=0.129 Sum_probs=218.1
Q ss_pred CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCc---EEEEeeccCCccccccccccccccccccceeEEEeeeccc
Q 007234 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ---VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDR 78 (612)
Q Consensus 2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~---~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~ 78 (612)
+.++|.++ +|+|++++|++++.||.|+|||+.++. ....+..|...+ .++.|.+.
T Consensus 10 h~~~v~~~--~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v------------------~~~~~~~~-- 67 (342)
T 1yfq_A 10 PKDYISDI--KIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPL------------------LCCNFIDN-- 67 (342)
T ss_dssp CSSCEEEE--EEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCE------------------EEEEEEES--
T ss_pred CCCcEEEE--EEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCce------------------EEEEECCC--
Confidence 46778555 999999999999999999999998887 233344454444 45555543
Q ss_pred ccccccCCc-EEEEEECCCcEEEEEc-CCCeEEEEeccC--CCCCeEEEEEecCCCEEEEEecCCcEEEEECCC------
Q 007234 79 KKKRKLGSS-LLVLGTGGGDVLALAV-SAGQLKWRLSDC--HPGGVSAISFATHGSCIYSAGADGMVCEIDPLT------ 148 (612)
Q Consensus 79 ~~~~~~~~~-~l~~gs~~g~I~vwd~-~~~~~~~~~~~~--h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~------ 148 (612)
+. ++++|+.+|.|++||+ .+++. ....+ |...|.+++|+| ++.|++++.|+.|++||+++
T Consensus 68 -------~~~~l~~~~~dg~i~~wd~~~~~~~--~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~ 137 (342)
T 1yfq_A 68 -------TDLQIYVGTVQGEILKVDLIGSPSF--QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVI 137 (342)
T ss_dssp -------SSEEEEEEETTSCEEEECSSSSSSE--EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCE
T ss_pred -------CCcEEEEEcCCCeEEEEEeccCCce--EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccc
Confidence 78 8999999999999999 88866 33357 999999999999 99999999999999999987
Q ss_pred ---CceeEEEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCC-Ce--eEEEEecCCCCEEEEEEee-CCcEEEEEEc
Q 007234 149 ---GSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSD-HK--KMQKFSGHPGAVRFMTFSD-NGKYVLSSAV 219 (612)
Q Consensus 149 ---~~~~~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~-~~--~~~~~~~h~~~v~~l~~sp-~~~~l~s~s~ 219 (612)
++++..+. +...+.+++|+|++ +++++ +.|++||+++ +. .......|...|.+++|+| +++++++++
T Consensus 138 ~~~~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~- 213 (342)
T 1yfq_A 138 AVKNLNSNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSS- 213 (342)
T ss_dssp EEEESCSSSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEE-
T ss_pred cccCCeeeEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEe-
Confidence 77666666 78899999999988 55555 8999999998 54 3345567889999999999 999999988
Q ss_pred CCCeEEEEEcCCC--ccccceeeEeecCCc---------eeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceec
Q 007234 220 GERYIALWRTDGV--KKQSASCVLAMEHPA---------VFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR 288 (612)
Q Consensus 220 ~d~~i~vwd~~~~--~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~ 288 (612)
.|+.|++|+++.. ... ......+..+. ..+..+.|+ |++++|++++.||.|++||+.+++.+.
T Consensus 214 ~dg~i~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-----~~~~~l~~~~~dg~i~vwd~~~~~~~~ 287 (342)
T 1yfq_A 214 IDGRVAVEFFDDQGDDYN-SSKRFAFRCHRLNLKDTNLAYPVNSIEFS-----PRHKFLYTAGSDGIISCWNLQTRKKIK 287 (342)
T ss_dssp TTSEEEEEECCTTCCSTT-CTTCEEEECCCCCTTCCSSCCCEEEEEEC-----TTTCCEEEEETTSCEEEEETTTTEEEE
T ss_pred cCCcEEEEEEcCCCcccc-cccceeeecccccccccccceeEEEEEEc-----CCCCEEEEecCCceEEEEcCccHhHhh
Confidence 7999999999876 100 00122333332 266778887 999999999999999999987765532
Q ss_pred ccCCceeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeecc-CCCeEEEEecCCCceEecc
Q 007234 289 NTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVN-SGEDINLNCSQDGVLLPMS 367 (612)
Q Consensus 289 ~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h-~~~v~~l~~S~dg~~l~~s 367 (612)
.+..| ...|.+++ |||.+| ++
T Consensus 288 -------------------------------------------------------~~~~~h~~~v~~~~--~~~~~l-~s 309 (342)
T 1yfq_A 288 -------------------------------------------------------NFAKFNEDSVVKIA--CSDNIL-CL 309 (342)
T ss_dssp -------------------------------------------------------ECCCCSSSEEEEEE--ECSSEE-EE
T ss_pred -------------------------------------------------------hhhcccCCCceEec--CCCCeE-EE
Confidence 22344 55788888 999999 99
Q ss_pred ccceee-eccee
Q 007234 368 QSLLKS-KRGRY 378 (612)
Q Consensus 368 ~s~d~~-~~~w~ 378 (612)
++.|+. .+.++
T Consensus 310 ~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 310 ATSDDTFKTNAA 321 (342)
T ss_dssp EEECTHHHHCSS
T ss_pred EecCCccccccc
Confidence 999998 66665
No 75
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.98 E-value=1.9e-30 Score=267.55 Aligned_cols=250 Identities=16% Similarity=0.201 Sum_probs=204.4
Q ss_pred CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECC--CCcEEEEeeccCCccccccccccccccccccceeEEEeeecccc
Q 007234 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTL--KGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK 79 (612)
Q Consensus 2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~ 79 (612)
|.++|+++ +|+|+|++||+|+.||.|+|||+. +++.+..+.+|...+.++.|+++ ..
T Consensus 10 h~~~v~~~--~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~------------------~~- 68 (379)
T 3jrp_A 10 HNELIHDA--VLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHP------------------KF- 68 (379)
T ss_dssp CCCCEEEE--EECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCG------------------GG-
T ss_pred CcccEEEE--EEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCC------------------CC-
Confidence 56788655 999999999999999999999998 56677777777665554444432 11
Q ss_pred cccccCCcEEEEEECCCcEEEEEcCCCe--EEEEeccCCCCCeEEEEEecC--CCEEEEEecCCcEEEEECCCCc--eeE
Q 007234 80 KKRKLGSSLLVLGTGGGDVLALAVSAGQ--LKWRLSDCHPGGVSAISFATH--GSCIYSAGADGMVCEIDPLTGS--LLG 153 (612)
Q Consensus 80 ~~~~~~~~~l~~gs~~g~I~vwd~~~~~--~~~~~~~~h~~~V~~l~~sp~--~~~l~s~s~dg~v~iwd~~~~~--~~~ 153 (612)
+.++++|+.||.|++||+.+++ ....+ ..|...|.+++|+|+ +.+|++++.|+.|++||+..+. ...
T Consensus 69 ------~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~ 141 (379)
T 3jrp_A 69 ------GTILASCSYDGKVLIWKEENGRWSQIAVH-AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI 141 (379)
T ss_dssp ------CSEEEEEETTSCEEEEEEETTEEEEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEE
T ss_pred ------CCEEEEeccCCEEEEEEcCCCceeEeeee-cCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeE
Confidence 6789999999999999999987 44444 579999999999999 9999999999999999998873 445
Q ss_pred EEecCCCCeeEEEECC-------------CCCEEEEeC--CeEEEEEcCCCe----eEEEEecCCCCEEEEEEeeC---C
Q 007234 154 KFRASTKGISCMAVSS-------------DGKMLATAA--GQLKTFNCSDHK----KMQKFSGHPGAVRFMTFSDN---G 211 (612)
Q Consensus 154 ~~~~~~~~v~~l~~sp-------------dg~~l~~~~--g~i~lwd~~~~~----~~~~~~~h~~~v~~l~~sp~---~ 211 (612)
.+..|...|.+++|+| ++.++++++ |.|++||+++++ ....+.+|..+|.+++|+|+ +
T Consensus 142 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~ 221 (379)
T 3jrp_A 142 IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLR 221 (379)
T ss_dssp EEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSS
T ss_pred EecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCC
Confidence 6778889999999999 699999987 899999998764 45678899999999999999 8
Q ss_pred cEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcc
Q 007234 212 KYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE 285 (612)
Q Consensus 212 ~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~ 285 (612)
.+|++++ .|+.|++||+.++.............+...+..+.|+ |++.+|++++.||.|++|++....
T Consensus 222 ~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s-----~~g~~l~~~~~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 222 SYLASVS-QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWS-----LSGNVLALSGGDNKVTLWKENLEG 289 (379)
T ss_dssp EEEEEEE-TTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEEC-----SSSCCEEEEESSSSEEEEEEEETT
T ss_pred CeEEEEe-CCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEc-----CCCCEEEEecCCCcEEEEeCCCCC
Confidence 8999987 7999999999987533111222222355566778887 999999999999999999987543
No 76
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.98 E-value=3.1e-30 Score=269.40 Aligned_cols=247 Identities=13% Similarity=0.213 Sum_probs=203.6
Q ss_pred CcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccc
Q 007234 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (612)
Q Consensus 3 s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (612)
..+|.++ +|+|+|++|++|+.||.|++||+.+++.+..+.+|...+. ++.|.
T Consensus 134 ~~~v~~v--~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~------------------~~~~~-------- 185 (401)
T 4aez_A 134 STYVASV--KWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVG------------------CLSWN-------- 185 (401)
T ss_dssp TCCEEEE--EECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEE------------------EEEEE--------
T ss_pred CCCEEEE--EECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceE------------------EEEEC--------
Confidence 5677555 9999999999999999999999999999998876655443 55551
Q ss_pred ccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCe
Q 007234 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI 162 (612)
Q Consensus 83 ~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v 162 (612)
+.++++|+.+|.|++||+...........+|...|.+++|+|++++|++|+.||.|++||+.+++.+..+..|...|
T Consensus 186 ---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v 262 (401)
T 4aez_A 186 ---RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAV 262 (401)
T ss_dssp ---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCC
T ss_pred ---CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceE
Confidence 67899999999999999995443333446799999999999999999999999999999999999999999999999
Q ss_pred eEEEECCCCC-EEEEeC----CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEE-cCCCeEEEEEcCCCcccc
Q 007234 163 SCMAVSSDGK-MLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSA-VGERYIALWRTDGVKKQS 236 (612)
Q Consensus 163 ~~l~~spdg~-~l~~~~----g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s-~~d~~i~vwd~~~~~~~~ 236 (612)
.+++|+|++. ++++++ +.|++||+.+++.+..+. |...|.+++|+|+++++++++ ..|+.|++|++.++...
T Consensus 263 ~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~- 340 (401)
T 4aez_A 263 KAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLT- 340 (401)
T ss_dssp CEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEE-
T ss_pred EEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccce-
Confidence 9999999764 555542 899999999999998886 677899999999999998853 36999999999887543
Q ss_pred ceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecc
Q 007234 237 ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRN 289 (612)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~ 289 (612)
....+..+...+..+.|+ |++.+|++++.||.|++|++.+++.+..
T Consensus 341 --~~~~~~~h~~~v~~~~~s-----~dg~~l~s~~~dg~i~iw~~~~~~~~~~ 386 (401)
T 4aez_A 341 --KQVDIPAHDTRVLYSALS-----PDGRILSTAASDENLKFWRVYDGDHVKR 386 (401)
T ss_dssp --EEEEEECCSSCCCEEEEC-----TTSSEEEEECTTSEEEEEECCC------
T ss_pred --eEEEecCCCCCEEEEEEC-----CCCCEEEEEeCCCcEEEEECCCCccccc
Confidence 334444555566677787 9999999999999999999998877653
No 77
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.98 E-value=3.1e-30 Score=257.90 Aligned_cols=235 Identities=14% Similarity=0.162 Sum_probs=188.5
Q ss_pred CcEEEEEECCCcEEEEEcCCC--eEEEEeccCCCCCeEEEEEec--CCCEEEEEecCCcEEEEECCCCc--eeEEEecCC
Q 007234 86 SSLLVLGTGGGDVLALAVSAG--QLKWRLSDCHPGGVSAISFAT--HGSCIYSAGADGMVCEIDPLTGS--LLGKFRAST 159 (612)
Q Consensus 86 ~~~l~~gs~~g~I~vwd~~~~--~~~~~~~~~h~~~V~~l~~sp--~~~~l~s~s~dg~v~iwd~~~~~--~~~~~~~~~ 159 (612)
+++|++|+.||.|+|||+..+ +.+..+ .+|.+.|++++|+| ++++|++|+.|++|++||+.+++ .+..+..|.
T Consensus 21 g~~las~s~D~~v~iw~~~~~~~~~~~~l-~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~ 99 (297)
T 2pm7_B 21 GKRMATCSSDKTIKIFEVEGETHKLIDTL-TGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHS 99 (297)
T ss_dssp SSEEEEEETTSCEEEEEBCSSCBCCCEEE-CCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCS
T ss_pred CCEEEEEeCCCEEEEEecCCCCcEEEEEE-ccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCC
Confidence 889999999999999999754 445444 68999999999986 48899999999999999998874 566788899
Q ss_pred CCeeEEEECCC--CCEEEEeC--CeEEEEEcCCCe--eEEEEecCCCCEEEEEEeeC-------------CcEEEEEEcC
Q 007234 160 KGISCMAVSSD--GKMLATAA--GQLKTFNCSDHK--KMQKFSGHPGAVRFMTFSDN-------------GKYVLSSAVG 220 (612)
Q Consensus 160 ~~v~~l~~spd--g~~l~~~~--g~i~lwd~~~~~--~~~~~~~h~~~v~~l~~sp~-------------~~~l~s~s~~ 220 (612)
..|.+++|+|+ |.+|++++ +.|++||++++. ....+.+|...|.+++|+|+ +++|++++ .
T Consensus 100 ~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs-~ 178 (297)
T 2pm7_B 100 ASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGG-A 178 (297)
T ss_dssp SCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEE-T
T ss_pred CceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEc-C
Confidence 99999999997 88999888 899999998763 24567899999999999997 46888887 7
Q ss_pred CCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCC---CcEEEEEecCCcEEEEECCCcceecccCCceeEe
Q 007234 221 ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDA---GLYVLAISETGVCYIWYGQNIEELRNTKATKILS 297 (612)
Q Consensus 221 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 297 (612)
|+.|++||++++... ......+..+...+..+.|+ |+ +.+|++++.||+|++||+.+..... ....
T Consensus 179 D~~v~lwd~~~~~~~-~~~~~~l~~H~~~V~~v~~s-----p~~~~~~~las~s~D~~v~iWd~~~~~~~~-----~~~~ 247 (297)
T 2pm7_B 179 DNLVKIWKYNSDAQT-YVLESTLEGHSDWVRDVAWS-----PTVLLRSYMASVSQDRTCIIWTQDNEQGPW-----KKTL 247 (297)
T ss_dssp TSCEEEEEEETTTTE-EEEEEEECCCSSCEEEEEEC-----CCCSSSEEEEEEETTSCEEEEEESSTTSCC-----EEEE
T ss_pred CCcEEEEEEcCCCce-EEEEEEecCCCCceEEEEEC-----CCCCCceEEEEEECCCcEEEEEeCCCCCcc-----ceee
Confidence 999999999876532 11234555566677888887 77 4899999999999999976532100 0000
Q ss_pred ecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecce
Q 007234 298 SSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGR 377 (612)
Q Consensus 298 ~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w 377 (612)
. ....|...|.+++|+|||++| ++++.|+++++|
T Consensus 248 ~---------------------------------------------~~~~~~~~v~~~~~s~~g~~l-as~~~D~~v~lw 281 (297)
T 2pm7_B 248 L---------------------------------------------KEEKFPDVLWRASWSLSGNVL-ALSGGDNKVTLW 281 (297)
T ss_dssp S---------------------------------------------SSSCCSSCEEEEEECSSSCCE-EEEETTSCEEEE
T ss_pred e---------------------------------------------ecccCCCcEEEEEECCCCCEE-EEEcCCCcEEEE
Confidence 0 001345579999999999999 999999999999
Q ss_pred ee
Q 007234 378 YV 379 (612)
Q Consensus 378 ~~ 379 (612)
+.
T Consensus 282 ~~ 283 (297)
T 2pm7_B 282 KE 283 (297)
T ss_dssp EE
T ss_pred EE
Confidence 86
No 78
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.97 E-value=3e-30 Score=269.53 Aligned_cols=280 Identities=14% Similarity=0.177 Sum_probs=217.9
Q ss_pred EEEcCCCCEEE-EEeCCCcEEEEECCCCc----EEEEeeccCCccccccccccccccccccceeEEEeeecccccccccC
Q 007234 11 TSFSPALDYFA-ICSGDARIKIWDTLKGQ----VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLG 85 (612)
Q Consensus 11 ~~fspdg~~la-s~s~dg~i~iwd~~~~~----~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 85 (612)
++++|+...++ +++.||.|+|||+.+.. ....+.+|.+.+ .++.|.+.+
T Consensus 40 ~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V------------------~~~~~~p~~-------- 93 (402)
T 2aq5_A 40 CAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPV------------------LDIAWCPHN-------- 93 (402)
T ss_dssp EEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCE------------------EEEEECTTC--------
T ss_pred EEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCE------------------EEEEeCCCC--------
Confidence 48888876444 57889999999996542 223344454444 455555432
Q ss_pred CcEEEEEECCCcEEEEEcCCC-------eEEEEeccCCCCCeEEEEEecCC-CEEEEEecCCcEEEEECCCCceeEEE--
Q 007234 86 SSLLVLGTGGGDVLALAVSAG-------QLKWRLSDCHPGGVSAISFATHG-SCIYSAGADGMVCEIDPLTGSLLGKF-- 155 (612)
Q Consensus 86 ~~~l~~gs~~g~I~vwd~~~~-------~~~~~~~~~h~~~V~~l~~sp~~-~~l~s~s~dg~v~iwd~~~~~~~~~~-- 155 (612)
+.++++|+.||.|++||+.++ +.+..+ .+|...|++++|+|++ ..|++++.||.|++||+.+++.+..+
T Consensus 94 ~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 172 (402)
T 2aq5_A 94 DNVIASGSEDCTVMVWEIPDGGLVLPLREPVITL-EGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGP 172 (402)
T ss_dssp TTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEE-ECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECT
T ss_pred CCEEEEEeCCCeEEEEEccCCCCccccCCceEEe-cCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEec
Confidence 789999999999999999987 444444 5799999999999998 69999999999999999999999999
Q ss_pred ecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEE-ecCCCC-EEEEEEeeCCcEEEEEE--cCCCeEEEEEc
Q 007234 156 RASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKF-SGHPGA-VRFMTFSDNGKYVLSSA--VGERYIALWRT 229 (612)
Q Consensus 156 ~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~-~~h~~~-v~~l~~sp~~~~l~s~s--~~d~~i~vwd~ 229 (612)
..|...|.+++|+|++++|++++ |.|++||+++++.+..+ .+|.+. +.++.|+|++.+++++. +.|+.|++||+
T Consensus 173 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~ 252 (402)
T 2aq5_A 173 DVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDT 252 (402)
T ss_dssp TTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEET
T ss_pred CCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcC
Confidence 78899999999999999999987 89999999999999998 788876 89999999999888872 26999999999
Q ss_pred CCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEE-EecCCcEEEEECCCcce-ecccCCceeEeecccccCCCC
Q 007234 230 DGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLA-ISETGVCYIWYGQNIEE-LRNTKATKILSSSEDVNSKSQ 307 (612)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t-~s~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~s~~~ 307 (612)
.+.+... ......+... +..+.|+ |++.+|++ ++.||.|++||+.+++. +..
T Consensus 253 ~~~~~~~--~~~~~~~~~~-v~~~~~s-----~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~------------------ 306 (402)
T 2aq5_A 253 KHLEEPL--SLQELDTSSG-VLLPFFD-----PDTNIVYLCGKGDSSIRYFEITSEAPFLHY------------------ 306 (402)
T ss_dssp TBCSSCS--EEEECCCCSS-CEEEEEE-----TTTTEEEEEETTCSCEEEEEECSSTTCEEE------------------
T ss_pred ccccCCc--eEEeccCCCc-eeEEEEc-----CCCCEEEEEEcCCCeEEEEEecCCCcceEe------------------
Confidence 8876421 2233334433 4556776 89998875 45799999999876542 100
Q ss_pred cccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceeeec
Q 007234 308 KSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN 381 (612)
Q Consensus 308 ~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~~~ 381 (612)
+.... |...|.+++|+|||.++ +++ ++.+++|++..
T Consensus 307 ----------------------------------l~~~~-~~~~v~~~~~sp~~~~~-~s~--~~~~~~~~l~~ 342 (402)
T 2aq5_A 307 ----------------------------------LSMFS-SKESQRGMGYMPKRGLE-VNK--CEIARFYKLHE 342 (402)
T ss_dssp ----------------------------------EEEEC-CSSCCSEEEECCGGGSC-GGG--TEEEEEEEEET
T ss_pred ----------------------------------ecccc-cCCcccceEEecccccc-eec--ceeEEEEEcCC
Confidence 00111 44579999999999998 654 55899999854
No 79
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.97 E-value=1.3e-30 Score=267.48 Aligned_cols=243 Identities=11% Similarity=0.184 Sum_probs=203.4
Q ss_pred cccceeEEEEcCC----CCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccc
Q 007234 4 SNIRDILTSFSPA----LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK 79 (612)
Q Consensus 4 ~~V~~l~~~fspd----g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~ 79 (612)
..|. +++|+|+ |++|++|+.||.|++||+.+++.+..+.+|...+.++.|++ .+
T Consensus 70 ~~v~--~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~------------------~~-- 127 (366)
T 3k26_A 70 ENFY--TCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHP------------------RD-- 127 (366)
T ss_dssp CCEE--EEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECS------------------SC--
T ss_pred CcEE--EEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECC------------------CC--
Confidence 5574 4599999 67999999999999999999999999987777666555554 22
Q ss_pred cccccCCcEEEEEECCCcEEEEEcCCCeEEEEec--cCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEec
Q 007234 80 KKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLS--DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA 157 (612)
Q Consensus 80 ~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~--~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~ 157 (612)
+.++++|+.||.|++||+.+++.+..+. .+|...|.+++|+|++++|++++.||.|++||+++++....+..
T Consensus 128 ------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 201 (366)
T 3k26_A 128 ------PNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKE 201 (366)
T ss_dssp ------TTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHH
T ss_pred ------CCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccce
Confidence 7899999999999999999999887663 57999999999999999999999999999999998765444333
Q ss_pred ----------------------------CCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCe--------------eEE
Q 007234 158 ----------------------------STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHK--------------KMQ 193 (612)
Q Consensus 158 ----------------------------~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~--------------~~~ 193 (612)
|...|.+++|+ ++++++++ |.|++||+.+++ .+.
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 279 (366)
T 3k26_A 202 SYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILG 279 (366)
T ss_dssp HHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEE
T ss_pred eEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheec
Confidence 88899999998 77888887 899999998764 378
Q ss_pred EEecCCCCEEEEEEeeC--CcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCC--ceeEEeEEecCCccCCCCcEEEE
Q 007234 194 KFSGHPGAVRFMTFSDN--GKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP--AVFMDCRCIDNGGVDDAGLYVLA 269 (612)
Q Consensus 194 ~~~~h~~~v~~l~~sp~--~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~t 269 (612)
.+.+|...|.+++|+|+ +++|++++ .||.|++||+.+++... .....+..+ ...+..+.|+ |++++|++
T Consensus 280 ~~~~~~~~v~~~~~s~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~-~~~~~~~~~~~~~~v~~~~~s-----~~~~~l~s 352 (366)
T 3k26_A 280 RFDYSQCDIWYMRFSMDFWQKMLALGN-QVGKLYVWDLEVEDPHK-AKCTTLTHHKCGAAIRQTSFS-----RDSSILIA 352 (366)
T ss_dssp EEECSSCCSSCCCCEECTTSSEEEEEC-TTSCEEEEECCSSSGGG-CEEEEECCTTCCSCEEEEEEC-----TTSSEEEE
T ss_pred cccccCCcEEEEEEcCCCCCcEEEEEe-cCCcEEEEECCCCCCcc-ccceEEcccccCCceEEEEeC-----CCCCeEEE
Confidence 88999999999999999 99999987 79999999999886542 122334433 5667788887 99999999
Q ss_pred EecCCcEEEEECCC
Q 007234 270 ISETGVCYIWYGQN 283 (612)
Q Consensus 270 ~s~dg~i~iwd~~~ 283 (612)
++.||.|++||+.+
T Consensus 353 ~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 353 VCDDASIWRWDRLR 366 (366)
T ss_dssp EETTSEEEEEEC--
T ss_pred EeCCCEEEEEEecC
Confidence 99999999999753
No 80
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=2.1e-29 Score=258.54 Aligned_cols=280 Identities=13% Similarity=0.104 Sum_probs=218.3
Q ss_pred CCcccceeEEEEcCC---CCEEEEEeCCCcEEEEECCC-CcEE-EEeeccCCccccccccccccccccccceeEEEeeec
Q 007234 2 GSSNIRDILTSFSPA---LDYFAICSGDARIKIWDTLK-GQVQ-TEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSV 76 (612)
Q Consensus 2 ~s~~V~~l~~~fspd---g~~las~s~dg~i~iwd~~~-~~~~-~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~ 76 (612)
+.++|+++ +|+|+ |++|++|+.||.|+|||+.+ +..+ ..+.+|...+.++.|+++
T Consensus 38 h~~~v~~~--~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~------------------ 97 (368)
T 3mmy_A 38 PDDSIGCL--SFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDD------------------ 97 (368)
T ss_dssp CSSCEEEE--EECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTT------------------
T ss_pred CCCceEEE--EEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcC------------------
Confidence 46788555 99999 69999999999999999997 5554 677777776666666555
Q ss_pred ccccccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEE--ecCCCEEEEEecCCcEEEEECCCCceeEE
Q 007234 77 DRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISF--ATHGSCIYSAGADGMVCEIDPLTGSLLGK 154 (612)
Q Consensus 77 ~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~--sp~~~~l~s~s~dg~v~iwd~~~~~~~~~ 154 (612)
+.+|++|+.||.|++||+.+++.+.. .+|...|++++| +|++++|++++.||.|++||+++++.+..
T Consensus 98 ---------~~~l~s~~~dg~v~iwd~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 166 (368)
T 3mmy_A 98 ---------GSKVFTASCDKTAKMWDLSSNQAIQI--AQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMV 166 (368)
T ss_dssp ---------SSEEEEEETTSEEEEEETTTTEEEEE--EECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEE
T ss_pred ---------CCEEEEEcCCCcEEEEEcCCCCceee--ccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEE
Confidence 88999999999999999999998753 469999999999 88999999999999999999999999999
Q ss_pred EecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEE--ecCCCCEEEEEEeeCCcE----EEEEEcCCCeEEE
Q 007234 155 FRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKF--SGHPGAVRFMTFSDNGKY----VLSSAVGERYIAL 226 (612)
Q Consensus 155 ~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~--~~h~~~v~~l~~sp~~~~----l~s~s~~d~~i~v 226 (612)
+..+. .+.++.+.++ .+++++ +.+++|+++........ ..+...+.++.+.++... +++++ .|+.|++
T Consensus 167 ~~~~~-~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~dg~i~i 242 (368)
T 3mmy_A 167 LQLPE-RCYCADVIYP--MAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGS-IEGRVAI 242 (368)
T ss_dssp EECSS-CEEEEEEETT--EEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEE-TTSEEEE
T ss_pred EecCC-CceEEEecCC--eeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEec-CCCcEEE
Confidence 88654 5677777654 444443 89999999876543322 234456777777766554 88877 7999999
Q ss_pred EEcCCCccccceeeEeecCCce------------eEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCce
Q 007234 227 WRTDGVKKQSASCVLAMEHPAV------------FMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATK 294 (612)
Q Consensus 227 wd~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~ 294 (612)
|++....... ....+..+.. .+..+.|+ |++++|++++.||.|++||+.+++.+.
T Consensus 243 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-----p~~~~l~s~~~dg~i~iwd~~~~~~~~------ 309 (368)
T 3mmy_A 243 HYINPPNPAK--DNFTFKCHRSNGTNTSAPQDIYAVNGIAFH-----PVHGTLATVGSDGRFSFWDKDARTKLK------ 309 (368)
T ss_dssp EESSCSCHHH--HSEEEECSEEC----CCCEEECCEEEEEEC-----TTTCCEEEEETTSCEEEEETTTTEEEE------
T ss_pred EecCCCCccc--cceeeeeeecccccccccccccceEEEEEe-----cCCCEEEEEccCCeEEEEECCCCcEEE------
Confidence 9998874311 2233333332 46778887 999999999999999999987765432
Q ss_pred eEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeee
Q 007234 295 ILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSK 374 (612)
Q Consensus 295 ~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~ 374 (612)
.+..|...|.+++|+|||++| ++++.|+..
T Consensus 310 -------------------------------------------------~~~~~~~~v~~~~~s~~g~~l-~~~s~d~~~ 339 (368)
T 3mmy_A 310 -------------------------------------------------TSEQLDQPISACCFNHNGNIF-AYASSYDWS 339 (368)
T ss_dssp -------------------------------------------------ECCCCSSCEEEEEECTTSSCE-EEEECCCST
T ss_pred -------------------------------------------------EecCCCCCceEEEECCCCCeE-EEEeccccc
Confidence 233566689999999999999 999888877
Q ss_pred cceee
Q 007234 375 RGRYV 379 (612)
Q Consensus 375 ~~w~~ 379 (612)
+.|++
T Consensus 340 ~~~~~ 344 (368)
T 3mmy_A 340 KGHEF 344 (368)
T ss_dssp TCGGG
T ss_pred ccccc
Confidence 66654
No 81
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.97 E-value=2.2e-29 Score=282.15 Aligned_cols=241 Identities=17% Similarity=0.224 Sum_probs=201.7
Q ss_pred CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (612)
Q Consensus 2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (612)
|+..|+++ +|+|+|++|++|+.||+|+|||+.+++....+.+|...+.++.|+++
T Consensus 429 h~~~v~~v--~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~----------------------- 483 (694)
T 3dm0_A 429 HSHFVEDV--VLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLD----------------------- 483 (694)
T ss_dssp CSSCEEEE--EECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTT-----------------------
T ss_pred CCCcEEEE--EECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCC-----------------------
Confidence 45677555 99999999999999999999999999999999988888777777766
Q ss_pred cccCCcEEEEEECCCcEEEEEcCCCeEEEEe--ccCCCCCeEEEEEecCC--CEEEEEecCCcEEEEECCCCceeEEEec
Q 007234 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRL--SDCHPGGVSAISFATHG--SCIYSAGADGMVCEIDPLTGSLLGKFRA 157 (612)
Q Consensus 82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~--~~~h~~~V~~l~~sp~~--~~l~s~s~dg~v~iwd~~~~~~~~~~~~ 157 (612)
+.++++|+.||.|++||.......... ..+|...|.+++|+|++ ..+++|+.|++|++||+.+++....+.+
T Consensus 484 ----~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~ 559 (694)
T 3dm0_A 484 ----NRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAG 559 (694)
T ss_dssp ----SSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred ----CCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcC
Confidence 788999999999999998765443222 24688999999999986 5799999999999999999999999999
Q ss_pred CCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccc
Q 007234 158 STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ 235 (612)
Q Consensus 158 ~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~ 235 (612)
|...|++++|+|+|++|++++ |.|++||+++++.+..+. +...|.+++|+|++.++++++ ++.|++||+.++...
T Consensus 560 h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~--~~~i~iwd~~~~~~~ 636 (694)
T 3dm0_A 560 HTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE-ANSVIHALCFSPNRYWLCAAT--EHGIKIWDLESKSIV 636 (694)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCB-CSSCEEEEEECSSSSEEEEEE--TTEEEEEETTTTEEE
T ss_pred CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEec-CCCcEEEEEEcCCCcEEEEEc--CCCEEEEECCCCCCh
Confidence 999999999999999999998 899999999999888776 456899999999998877654 677999999987643
Q ss_pred cceeeEeec-----------------CCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECC
Q 007234 236 SASCVLAME-----------------HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (612)
Q Consensus 236 ~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~ 282 (612)
. .+... .....+..+.|+ |+|++|++|+.||.|++|++.
T Consensus 637 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s-----pdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 637 E---DLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWS-----ADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp E---EECCCCC----------------CCCCEEEEEEC-----TTSSEEEEEETTSEEEEEEC-
T ss_pred h---hhccccccccccccccccccCCceeEEeeeEEEc-----CCCCEEEEEcCCCeEEEEecc
Confidence 1 11100 011124566777 999999999999999999975
No 82
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.7e-30 Score=270.89 Aligned_cols=295 Identities=9% Similarity=-0.015 Sum_probs=223.0
Q ss_pred ccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCcccccccccccc---------------c-cccccce
Q 007234 5 NIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLE---------------R-EHLSVDY 68 (612)
Q Consensus 5 ~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~---------------~-~~~~~~~ 68 (612)
-|.++ +|||||+++|+++.|++|+ |...++.+ ++|...+..+.|+|+-. . ++ ...+
T Consensus 17 ~v~sv--~~SpDG~~iASas~D~TV~--d~~~~~~l---~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~-~~~V 88 (588)
T 2j04_A 17 WKNNL--TWARDGTLYLTTFPDISIG--QPKYAKDI---NCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQP-VCYP 88 (588)
T ss_dssp SSCCE--EECTTSCEEEECSSSEEEE--EECCCSCC---SSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSC-SCCE
T ss_pred cEEEE--EECCCCCEEEEEcCCceee--ccccccee---cCCCccEEEEEECCCCCcceEEEEeCCCceEeecCC-CCcE
Confidence 45445 9999999999999999999 76666544 78999999988876510 0 12 4457
Q ss_pred eEEEeeecccccccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCC-----CeEEEEEecCCCEEEEEecCCcEEE
Q 007234 69 TCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPG-----GVSAISFATHGSCIYSAGADGMVCE 143 (612)
Q Consensus 69 ~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~-----~V~~l~~sp~~~~l~s~s~dg~v~i 143 (612)
.+++|.|. +..|++++.+|.|++||..+ ++..+ . |.. .|.+++|||||++|++|+.||+|++
T Consensus 89 ~~vawSPd---------G~~LAs~s~dg~V~iwd~~~--~l~~l-~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkI 155 (588)
T 2j04_A 89 RVCKPSPI---------DDWMAVLSNNGNVSVFKDNK--MLTNL-D-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQF 155 (588)
T ss_dssp EEEEECSS---------SSCEEEEETTSCEEEEETTE--EEEEC-C-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEE
T ss_pred EEEEECCC---------CCEEEEEeCCCcEEEEeCCc--eeeec-c-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEE
Confidence 88888886 78899999999999999544 44444 4 554 5999999999999999999999999
Q ss_pred EECCCCce-------eEEE----ecCCCCeeEEEECCCCCEEEEeC-CeEEEEEcCCCee---EEEE-ecCCCCEEEEEE
Q 007234 144 IDPLTGSL-------LGKF----RASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKK---MQKF-SGHPGAVRFMTF 207 (612)
Q Consensus 144 wd~~~~~~-------~~~~----~~~~~~v~~l~~spdg~~l~~~~-g~i~lwd~~~~~~---~~~~-~~h~~~v~~l~~ 207 (612)
||+.++.. +.++ .+|...|.+++|+||| +++++. +.|++||+.+++. ..++ .+|...|.+++|
T Consensus 156 Wd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaF 234 (588)
T 2j04_A 156 FSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKI 234 (588)
T ss_dssp EECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEE
T ss_pred EECCCCccccccceeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEE
Confidence 99998853 5776 5566799999999999 555555 8999999988773 4567 488899999999
Q ss_pred eeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEe--cCCccCCCCcEEEEEecCCcEEEEECCCcc
Q 007234 208 SDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCI--DNGGVDDAGLYVLAISETGVCYIWYGQNIE 285 (612)
Q Consensus 208 sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~ 285 (612)
+ |+.+++++ ++.|++||+.+++.. ....+|... +..+.+ + |++..++++++||+ ++|..+.
T Consensus 235 s--g~~LASa~--~~tIkLWd~~~~~~~----~~~~gh~~~-V~~va~~~s-----~d~~~La~a~edG~-klw~~d~-- 297 (588)
T 2j04_A 235 V--DYKVVLTC--PGYVHKIDLKNYSIS----SLKTGSLEN-FHIIPLNHE-----KESTILLMSNKTSY-KVLLEDE-- 297 (588)
T ss_dssp E--TTEEEEEC--SSEEEEEETTTTEEE----EEECSCCSC-CCEEEETTC-----SSCEEEEECSSCEE-EEEESSS--
T ss_pred E--CCEEEEEe--CCeEEEEECCCCeEE----EEEcCCCce-EEEEEeeeC-----CCCCEEEEEcCCCC-EEEeecc--
Confidence 9 67888875 699999999987642 334344444 445677 6 99999999999999 9999771
Q ss_pred eecccCCceeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEe
Q 007234 286 ELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLP 365 (612)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~ 365 (612)
+. ++|++. .+++. ++.++.|+. .|.... .+. +...|.+++|||||+.+
T Consensus 298 -----------~~----~spd~~----l~a~~--d~~v~lW~~-----~g~~l~----~~~-~~~~I~~va~SPdG~~l- 345 (588)
T 2j04_A 298 -----------LH----VTADNI----IAPYL--EKKFKKWST-----IWNEFN----NYE-TTLVIHGISLSPDGYSI- 345 (588)
T ss_dssp -----------EE----EECCCS----SHHHH--HHHHHHTTT-----TTTSSS----SSC-CEEEEEEEEECTTSSEE-
T ss_pred -----------EE----ECCCce----EEEEc--CCEEEEEEC-----CCCcee----eec-cceEEEEEEECCCCCEE-
Confidence 11 455654 33333 777777762 111111 222 24458999999999999
Q ss_pred ccccc
Q 007234 366 MSQSL 370 (612)
Q Consensus 366 ~s~s~ 370 (612)
++++.
T Consensus 346 A~~~~ 350 (588)
T 2j04_A 346 AIVYD 350 (588)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 77763
No 83
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.97 E-value=1.5e-29 Score=260.39 Aligned_cols=250 Identities=12% Similarity=0.184 Sum_probs=201.0
Q ss_pred CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEe--eccCCccccccccccccccccccceeEEEeeecccc
Q 007234 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEF--ADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK 79 (612)
Q Consensus 2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~--~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~ 79 (612)
+..+|+++ +|+|++++|++++.||.|++||+.+++....+ ..|... +.++.|.+.
T Consensus 51 h~~~v~~~--~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~------------------v~~~~~~~~--- 107 (372)
T 1k8k_C 51 HNGQVTGV--DWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRA------------------ARCVRWAPN--- 107 (372)
T ss_dssp CSSCEEEE--EEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSC------------------EEEEEECTT---
T ss_pred CCCcccEE--EEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCc------------------eeEEEECCC---
Confidence 45677555 99999999999999999999999988765544 334443 444555443
Q ss_pred cccccCCcEEEEEECCCcEEEEEcCCCe---EEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEEC----------
Q 007234 80 KKRKLGSSLLVLGTGGGDVLALAVSAGQ---LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDP---------- 146 (612)
Q Consensus 80 ~~~~~~~~~l~~gs~~g~I~vwd~~~~~---~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~---------- 146 (612)
+.++++|+.+|.|++||+..+. ....+..+|...|.+++|+|++++|++++.||.|++||+
T Consensus 108 ------~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~ 181 (372)
T 1k8k_C 108 ------EKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPA 181 (372)
T ss_dssp ------SSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCC
T ss_pred ------CCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEccccccccccc
Confidence 7889999999999999999876 344555679999999999999999999999999999995
Q ss_pred --------CCCceeEEEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEE
Q 007234 147 --------LTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLS 216 (612)
Q Consensus 147 --------~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s 216 (612)
..++.+..+..|...|.+++|+|++++|++++ |.|++||+++++.+..+.+|..+|.+++|+|++.++++
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 261 (372)
T 1k8k_C 182 PTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAA 261 (372)
T ss_dssp CBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEE
T ss_pred ccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEE
Confidence 46788888988999999999999999999988 89999999999999999999999999999999987776
Q ss_pred EEcCCCeEEEEEcCC--Cccc---------------------------cceee------Eee--cCCceeEEeEEecCCc
Q 007234 217 SAVGERYIALWRTDG--VKKQ---------------------------SASCV------LAM--EHPAVFMDCRCIDNGG 259 (612)
Q Consensus 217 ~s~~d~~i~vwd~~~--~~~~---------------------------~~~~~------~~~--~~~~~~~~~~~~~~~~ 259 (612)
+ .|+.|++|++.. +... ..... ..+ .|...+..+.+++
T Consensus 262 ~--~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--- 336 (372)
T 1k8k_C 262 G--HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLS--- 336 (372)
T ss_dssp E--TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEE---
T ss_pred E--eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEec---
Confidence 5 599999999987 3200 00000 111 3444444433455
Q ss_pred cCCCC---cEEEEEecCCcEEEEECCCccee
Q 007234 260 VDDAG---LYVLAISETGVCYIWYGQNIEEL 287 (612)
Q Consensus 260 ~~~~~---~~l~t~s~dg~i~iwd~~~~~~~ 287 (612)
++| .+|++++.||.|++|++.+++.+
T Consensus 337 --~~g~~~~~l~s~~~Dg~i~~W~~~~~~~~ 365 (372)
T 1k8k_C 337 --GGKAKCSQFCTTGMDGGMSIWDVRSLESA 365 (372)
T ss_dssp --STTTSCSEEEEEETTSEEEEEEHHHHHHH
T ss_pred --CCCcceeeEEEecCCCceEEEEecChhHh
Confidence 777 99999999999999999877654
No 84
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.97 E-value=1e-29 Score=264.41 Aligned_cols=248 Identities=14% Similarity=0.122 Sum_probs=203.8
Q ss_pred CCcccceeEEEEcCC----C---CEEEEEeCCCcEEEEECCCCcE-----EEEeeccCCcccccccccccccccccccee
Q 007234 2 GSSNIRDILTSFSPA----L---DYFAICSGDARIKIWDTLKGQV-----QTEFADIASTETTSLYGNRLEREHLSVDYT 69 (612)
Q Consensus 2 ~s~~V~~l~~~fspd----g---~~las~s~dg~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 69 (612)
+..+|.++ +|+|+ | ++|++++.||.|++||+.+++. ...+..|.... ....+.
T Consensus 61 h~~~v~~~--~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~v~ 125 (397)
T 1sq9_A 61 HKSGLHHV--DVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDM-------------KKHSFW 125 (397)
T ss_dssp CTTCEEEE--EEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTG-------------GGSCEE
T ss_pred CCCcEEEE--EEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeeccccccc-------------CCCcEE
Confidence 35677555 99999 9 9999999999999999998886 77776552000 023455
Q ss_pred EEEee----ecccccccccCCcE-EEEEECCCcEEEEEcCC------CeEEE-----Eec------cCCCCCeEEEEEec
Q 007234 70 CMKWL----SVDRKKKRKLGSSL-LVLGTGGGDVLALAVSA------GQLKW-----RLS------DCHPGGVSAISFAT 127 (612)
Q Consensus 70 ~~~w~----~~~~~~~~~~~~~~-l~~gs~~g~I~vwd~~~------~~~~~-----~~~------~~h~~~V~~l~~sp 127 (612)
++.|. +. +.+ +++|+.+|.|++||+.+ ++.+. .+. ..|...|.+++|+|
T Consensus 126 ~~~~~~~~~~~---------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 196 (397)
T 1sq9_A 126 ALKWGASNDRL---------LSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE 196 (397)
T ss_dssp EEEEECCC-------------CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT
T ss_pred EEEEeeccCCC---------CceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECC
Confidence 66665 32 778 99999999999999998 55543 442 45889999999999
Q ss_pred CCCEEEEEecCCcEEEEECCCCceeEEEec---C---CCCeeEEEECCCCCEEEEeC-----CeEEEEEcCCCeeEEEEe
Q 007234 128 HGSCIYSAGADGMVCEIDPLTGSLLGKFRA---S---TKGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKKMQKFS 196 (612)
Q Consensus 128 ~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~---~---~~~v~~l~~spdg~~l~~~~-----g~i~lwd~~~~~~~~~~~ 196 (612)
++ .+++++.||.|++||+++++.+..+.. | ...|.+++|+|++++|++++ |.|++||+++++.+..+.
T Consensus 197 ~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~ 275 (397)
T 1sq9_A 197 RG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLS 275 (397)
T ss_dssp TS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEEC
T ss_pred Cc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceec
Confidence 99 999999999999999999999999998 8 88999999999999999886 489999999999999999
Q ss_pred c-------------CCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeec------CC-----------
Q 007234 197 G-------------HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME------HP----------- 246 (612)
Q Consensus 197 ~-------------h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~------~~----------- 246 (612)
+ |...|.+++|+|++++|++++ .|+.|++||+.+++.. ..+. .+
T Consensus 276 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~~g~~~~ 349 (397)
T 1sq9_A 276 VPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAG-WDGKLRFWDVKTKERI-----TTLNMHCDDIEIEEDILAVDEHG 349 (397)
T ss_dssp BC--------CCBSBSSCEEEEEECSSSSEEEEEE-TTSEEEEEETTTTEEE-----EEEECCGGGCSSGGGCCCBCTTS
T ss_pred cCcccccccccccccCCcEEEEEECCCCCEEEEEe-CCCeEEEEEcCCCcee-----EEEecccCcccchhhhhcccccc
Confidence 8 999999999999999999988 7999999999987643 3333 33
Q ss_pred ----ceeEEeEEecCCccCCCC----------cEEEEEecCCcEEEEECCCcc
Q 007234 247 ----AVFMDCRCIDNGGVDDAG----------LYVLAISETGVCYIWYGQNIE 285 (612)
Q Consensus 247 ----~~~~~~~~~~~~~~~~~~----------~~l~t~s~dg~i~iwd~~~~~ 285 (612)
...+..+.|+ |++ .+|++++.||.|++|++.+++
T Consensus 350 ~~~~~~~v~~~~~~-----~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 350 DSLAEPGVFDVKFL-----KKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp CBCSSCCEEEEEEE-----CTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred ccccCCceeEEEec-----cccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 5566777887 887 799999999999999988763
No 85
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.97 E-value=1.2e-28 Score=250.44 Aligned_cols=247 Identities=17% Similarity=0.208 Sum_probs=200.1
Q ss_pred CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (612)
Q Consensus 2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (612)
+..+|.++ +|+|||++|++|+.||.|++|+...+........+...+....+.+.
T Consensus 85 h~~~V~~~--~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------- 139 (340)
T 4aow_A 85 HSHFVSDV--VISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSD----------------------- 139 (340)
T ss_dssp CSSCEEEE--EECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTT-----------------------
T ss_pred CCCCEEEE--EECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeec-----------------------
Confidence 35678555 99999999999999999999999998887776654443332222222
Q ss_pred cccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCC--CEEEEEecCCcEEEEECCCCceeEEEecCC
Q 007234 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHG--SCIYSAGADGMVCEIDPLTGSLLGKFRAST 159 (612)
Q Consensus 82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~--~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~ 159 (612)
+.++++|+.||.+++||+...........+|...|..++|++++ ..+++++.|+.|++||+.+++.+..+.+|.
T Consensus 140 ----~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~ 215 (340)
T 4aow_A 140 ----NRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHT 215 (340)
T ss_dssp ----SSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred ----CccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCC
Confidence 67899999999999999988877666667899999999998864 568899999999999999999999999999
Q ss_pred CCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCcccc-
Q 007234 160 KGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS- 236 (612)
Q Consensus 160 ~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~- 236 (612)
..|++++|+|++++|++++ |.|++||+++.+.+..+.++ ..|.++.|+|++.++ +++ .|+.|++||++++....
T Consensus 216 ~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~-~~~-~d~~i~iwd~~~~~~~~~ 292 (340)
T 4aow_A 216 GYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG-DIINALCFSPNRYWL-CAA-TGPSIKIWDLEGKIIVDE 292 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS-SCEEEEEECSSSSEE-EEE-ETTEEEEEETTTTEEEEE
T ss_pred CcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC-ceEEeeecCCCCcee-ecc-CCCEEEEEECCCCeEEEe
Confidence 9999999999999999988 89999999999999888754 689999999998755 455 59999999998765321
Q ss_pred ---ceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcc
Q 007234 237 ---ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE 285 (612)
Q Consensus 237 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~ 285 (612)
.........+...+..++|+ |+|++|++|+.||.|++||+.+|.
T Consensus 293 ~~~~~~~~~~~~h~~~v~~l~~s-----~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 293 LKQEVISTSSKAEPPQCTSLAWS-----ADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp ECCC-------CCCCCEEEEEEC-----TTSSEEEEEETTSCEEEEEEEC--
T ss_pred ccccceeeeccCCCCCEEEEEEC-----CCCCEEEEEeCCCEEEEEeCCCcC
Confidence 00111122344556777887 999999999999999999999885
No 86
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.97 E-value=6.2e-29 Score=264.57 Aligned_cols=243 Identities=14% Similarity=0.185 Sum_probs=204.5
Q ss_pred CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (612)
Q Consensus 2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (612)
+.++|.++ +|+|++ +|++|+.||+|++||+.+++.+..+.+|...+.++.|. +...
T Consensus 161 h~~~V~~l--~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~------------------~~~~--- 216 (464)
T 3v7d_B 161 HDGGVWAL--KYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIV------------------EYKN--- 216 (464)
T ss_dssp CSSCEEEE--EECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE------------------ESSS---
T ss_pred CCcCEEEE--EEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEe------------------cCCC---
Confidence 46788555 999998 99999999999999999999999998776655544443 3211
Q ss_pred cccCCcEEEEEECCCcEEEEEcCCCeEE----------------------EEeccCCCCCeEEEEEecCCCEEEEEecCC
Q 007234 82 RKLGSSLLVLGTGGGDVLALAVSAGQLK----------------------WRLSDCHPGGVSAISFATHGSCIYSAGADG 139 (612)
Q Consensus 82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~----------------------~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg 139 (612)
+.++++|+.||.|++||+.++... .....+|...|.++ +++++++++|+.||
T Consensus 217 ----~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~ 290 (464)
T 3v7d_B 217 ----IKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDN 290 (464)
T ss_dssp ----CEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTS
T ss_pred ----CCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCC
Confidence 678999999999999999887532 22346788888887 56788999999999
Q ss_pred cEEEEECCCCceeEEEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEE
Q 007234 140 MVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSS 217 (612)
Q Consensus 140 ~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~ 217 (612)
.|++||+.+++++..+.+|...|.+++|+|+++++++|+ |.|++||+++++++..+.+|...|.++.|+ +.+++++
T Consensus 291 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~ 368 (464)
T 3v7d_B 291 TLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSA 368 (464)
T ss_dssp CEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEE
T ss_pred eEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEE
Confidence 999999999999999999999999999999999999998 899999999999999999999999999997 5789988
Q ss_pred EcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecc
Q 007234 218 AVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRN 289 (612)
Q Consensus 218 s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~ 289 (612)
+ .|+.|++||+.+.... .... +.......+++ +++.++++++ ||.|++||+.+++.+..
T Consensus 369 s-~dg~v~vwd~~~~~~~-----~~~~-~~~~~~~~~~~-----~~~~~l~~~~-dg~i~iwd~~~g~~~~~ 427 (464)
T 3v7d_B 369 A-ADGSIRGWDANDYSRK-----FSYH-HTNLSAITTFY-----VSDNILVSGS-ENQFNIYNLRSGKLVHA 427 (464)
T ss_dssp E-TTSEEEEEETTTCCEE-----EEEE-CTTCCCEEEEE-----ECSSEEEEEE-TTEEEEEETTTCCEEES
T ss_pred e-CCCcEEEEECCCCcee-----eeec-CCCCccEEEEE-----eCCCEEEEec-CCeEEEEECCCCcEEeh
Confidence 7 7999999999987533 3332 33344556666 8999999998 89999999999998864
No 87
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.5e-30 Score=289.73 Aligned_cols=251 Identities=16% Similarity=0.202 Sum_probs=206.3
Q ss_pred CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECC--CCcEEEEeeccCCccccccccccccccccccceeEEEeeecccc
Q 007234 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTL--KGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK 79 (612)
Q Consensus 2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~ 79 (612)
|.++|+++ +|+|+|++|++|+.||+|+|||+. +++....+.+|.+.+.++.|+++ ..
T Consensus 8 H~~~V~~l--~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~------------------~~- 66 (753)
T 3jro_A 8 HNELIHDA--VLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHP------------------KF- 66 (753)
T ss_dssp CCCCEEEE--CCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCT------------------TS-
T ss_pred CcceeEEE--EECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCC------------------CC-
Confidence 56788655 999999999999999999999998 55677778777766665555433 10
Q ss_pred cccccCCcEEEEEECCCcEEEEEcCCCe--EEEEeccCCCCCeEEEEEecC--CCEEEEEecCCcEEEEECCCC--ceeE
Q 007234 80 KKRKLGSSLLVLGTGGGDVLALAVSAGQ--LKWRLSDCHPGGVSAISFATH--GSCIYSAGADGMVCEIDPLTG--SLLG 153 (612)
Q Consensus 80 ~~~~~~~~~l~~gs~~g~I~vwd~~~~~--~~~~~~~~h~~~V~~l~~sp~--~~~l~s~s~dg~v~iwd~~~~--~~~~ 153 (612)
+.++++|+.||.|++||+.+++ ....+ .+|...|++++|+|+ ++.+++|+.||.|++||+.++ ....
T Consensus 67 ------~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~-~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~ 139 (753)
T 3jro_A 67 ------GTILASCSYDGKVLIWKEENGRWSQIAVH-AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI 139 (753)
T ss_dssp ------CSEEEEEETTSCEEEEEEETTEEEEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCE
T ss_pred ------CCEEEEEeCCCeEEEEECCCCcccccccc-cCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCccee
Confidence 6789999999999999999987 44444 679999999999999 999999999999999999887 3445
Q ss_pred EEecCCCCeeEEEECC-------------CCCEEEEeC--CeEEEEEcCCC----eeEEEEecCCCCEEEEEEeeC---C
Q 007234 154 KFRASTKGISCMAVSS-------------DGKMLATAA--GQLKTFNCSDH----KKMQKFSGHPGAVRFMTFSDN---G 211 (612)
Q Consensus 154 ~~~~~~~~v~~l~~sp-------------dg~~l~~~~--g~i~lwd~~~~----~~~~~~~~h~~~v~~l~~sp~---~ 211 (612)
.+..|...|.+++|+| ++.++++|+ |.|++||++++ .....+.+|..+|.+++|+|+ +
T Consensus 140 ~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~ 219 (753)
T 3jro_A 140 IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLR 219 (753)
T ss_dssp EEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSS
T ss_pred EeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCC
Confidence 6778889999999999 588898887 89999999877 567788899999999999999 8
Q ss_pred cEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcce
Q 007234 212 KYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE 286 (612)
Q Consensus 212 ~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~ 286 (612)
+++++++ .||.|++||+.++.............+...+..+.|+ |+|.++++++.||.|++|++.++..
T Consensus 220 ~~l~s~s-~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s-----pdg~~l~s~s~Dg~I~vwd~~~~~~ 288 (753)
T 3jro_A 220 SYLASVS-QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWS-----LSGNVLALSGGDNKVTLWKENLEGK 288 (753)
T ss_dssp EEEEEEE-SSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEEC-----TTTCCEEEECSSSCEECCBCCSSSC
T ss_pred CEEEEEe-cCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEc-----CCCCEEEEEcCCCEEEEEecCCCCC
Confidence 9999987 7999999999987432111222223345556677787 9999999999999999999886543
No 88
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=3.7e-29 Score=254.07 Aligned_cols=276 Identities=14% Similarity=0.072 Sum_probs=197.4
Q ss_pred CcEEEEEECCCcEEEEEcCCCe----EEEEeccCCCCCeEEEEEec--CCCEEEEEecCCcEEEEECCCC---------c
Q 007234 86 SSLLVLGTGGGDVLALAVSAGQ----LKWRLSDCHPGGVSAISFAT--HGSCIYSAGADGMVCEIDPLTG---------S 150 (612)
Q Consensus 86 ~~~l~~gs~~g~I~vwd~~~~~----~~~~~~~~h~~~V~~l~~sp--~~~~l~s~s~dg~v~iwd~~~~---------~ 150 (612)
+.+|++|+.||.|++||+.++. ....+ .+|...|++++|+| ++++|++|+.||.|++||+.++ +
T Consensus 23 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~ 101 (351)
T 3f3f_A 23 GRHVATCSSDQHIKVFKLDKDTSNWELSDSW-RAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWN 101 (351)
T ss_dssp SSEEEEEETTSEEEEEEECSSSCCEEEEEEE-ECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEE
T ss_pred CCEEEEeeCCCeEEEEECCCCCCcceeccee-ccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcc
Confidence 7899999999999999998763 34333 67999999999999 6999999999999999999887 5
Q ss_pred eeEEEecCCCCeeEEEECCC--CCEEEEeC--CeEEEEEcCCCeeEEEEe-------------cCCCCEEEEEEeeC---
Q 007234 151 LLGKFRASTKGISCMAVSSD--GKMLATAA--GQLKTFNCSDHKKMQKFS-------------GHPGAVRFMTFSDN--- 210 (612)
Q Consensus 151 ~~~~~~~~~~~v~~l~~spd--g~~l~~~~--g~i~lwd~~~~~~~~~~~-------------~h~~~v~~l~~sp~--- 210 (612)
.+..+..|...|.+++|+|+ ++++++++ |.|++||+++++.+..+. +|...+.++.|+|+
T Consensus 102 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 181 (351)
T 3f3f_A 102 KLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFS 181 (351)
T ss_dssp EEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSS
T ss_pred eeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCC
Confidence 67788889999999999999 99999887 899999998876544332 68889999999997
Q ss_pred CcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCC----cEEEEEecCCcEEEEECCCcce
Q 007234 211 GKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAG----LYVLAISETGVCYIWYGQNIEE 286 (612)
Q Consensus 211 ~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~t~s~dg~i~iwd~~~~~~ 286 (612)
+.++++++ .|+.+.+|+...+... ....+..+...+..+.|+ |++ .+|++++.||.|++||+.++..
T Consensus 182 ~~~l~~~~-~~~~~~~~~~~~~~~~---~~~~~~~h~~~i~~~~~~-----p~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 252 (351)
T 3f3f_A 182 PEKLAVSA-LEQAIIYQRGKDGKLH---VAAKLPGHKSLIRSISWA-----PSIGRWYQLIATGCKDGRIRIFKITEKLS 252 (351)
T ss_dssp CCEEEEEE-TTEEEEEEECTTSCEE---EEEECCCCCSCEEEEEEC-----CCSSCSSEEEEEEETTSCEEEEEEEECC-
T ss_pred CcEEEEec-CCCcEEEEccCCCcee---eeeecCCCCcceeEEEEC-----CCCCCcceEEEEEcCCCeEEEEeCCCCcC
Confidence 88899887 6999988877766532 345555566667788887 887 8999999999999999887644
Q ss_pred ecccCCceeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEec
Q 007234 287 LRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPM 366 (612)
Q Consensus 287 ~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~ 366 (612)
............... ..+... ....+..++.. . ................+.+|...|.+++|+|||++| +
T Consensus 253 ~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l-~ 322 (351)
T 3f3f_A 253 PLASEESLTNSNMFD-NSADVD----MDAQGRSDSNT---E-EKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTIL-S 322 (351)
T ss_dssp -----------------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCE-E
T ss_pred ccccCCcccceeccC-CCcccc----ccccccccccc---c-eeeeecccccccEEEEEecccccEEEEEEcCCCCEE-E
Confidence 332221111111000 111111 11111111100 0 000111112224455677899999999999999999 9
Q ss_pred cccceeeecceeeec
Q 007234 367 SQSLLKSKRGRYVQN 381 (612)
Q Consensus 367 s~s~d~~~~~w~~~~ 381 (612)
+++.|+.+++|++..
T Consensus 323 s~~~dg~v~iw~~~~ 337 (351)
T 3f3f_A 323 SAGDDGKVRLWKATY 337 (351)
T ss_dssp EEETTSCEEEEEECT
T ss_pred EecCCCcEEEEecCc
Confidence 999999999999853
No 89
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.97 E-value=1.7e-29 Score=258.34 Aligned_cols=253 Identities=11% Similarity=0.128 Sum_probs=199.2
Q ss_pred CcccceeEEEEcCC---CCEEEEEeCCCcEEEEECCCCc-EEEEeeccCCccccccccccccccccccceeEEEeeeccc
Q 007234 3 SSNIRDILTSFSPA---LDYFAICSGDARIKIWDTLKGQ-VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDR 78 (612)
Q Consensus 3 s~~V~~l~~~fspd---g~~las~s~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~ 78 (612)
..+|.+ ++|+|+ |++|++|+.||.|++||+.+++ .+..+.+|...+.++.|.+.+ ..++
T Consensus 65 ~~~v~~--~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~---------------~~s~ 127 (357)
T 3i2n_A 65 AKPIKC--GTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGL---------------GIGE 127 (357)
T ss_dssp SSCEEE--EECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGG---------------GCC-
T ss_pred cCcEEE--EEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeecccc---------------ccCC
Confidence 457754 499999 7999999999999999999988 888888777666555332210 0111
Q ss_pred ccccccCCcEEEEEECCCcEEEEEcCCCe-EEEEeccCCC----CCeEEEE----EecCCCEEEEEecCCcEEEEECCCC
Q 007234 79 KKKRKLGSSLLVLGTGGGDVLALAVSAGQ-LKWRLSDCHP----GGVSAIS----FATHGSCIYSAGADGMVCEIDPLTG 149 (612)
Q Consensus 79 ~~~~~~~~~~l~~gs~~g~I~vwd~~~~~-~~~~~~~~h~----~~V~~l~----~sp~~~~l~s~s~dg~v~iwd~~~~ 149 (612)
. +.++++|+.||.|++||+.++. .+..+ ..|. ..|.+++ |+|+++++++++.||.|++||++++
T Consensus 128 ~------~~~l~~~~~d~~i~vwd~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~ 200 (357)
T 3i2n_A 128 G------APEIVTGSRDGTVKVWDPRQKDDPVANM-EPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNM 200 (357)
T ss_dssp C------CCEEEEEETTSCEEEECTTSCSSCSEEE-CCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTT
T ss_pred C------ccEEEEEeCCCeEEEEeCCCCCCcceec-cccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccC
Confidence 1 7889999999999999999887 44444 3343 3899998 7889999999999999999999998
Q ss_pred ceeEEEecCCCCeeEEEECC---CCCEEEEeC--CeEEEEEcCCCeeEEEEe-----cCCCCEEEEEEeeCCc-EEEEEE
Q 007234 150 SLLGKFRASTKGISCMAVSS---DGKMLATAA--GQLKTFNCSDHKKMQKFS-----GHPGAVRFMTFSDNGK-YVLSSA 218 (612)
Q Consensus 150 ~~~~~~~~~~~~v~~l~~sp---dg~~l~~~~--g~i~lwd~~~~~~~~~~~-----~h~~~v~~l~~sp~~~-~l~s~s 218 (612)
+.... ..+...|.+++|+| ++.++++++ |.|++||+++++....+. +|...|.+++|+|+++ ++++++
T Consensus 201 ~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 279 (357)
T 3i2n_A 201 ALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAG 279 (357)
T ss_dssp EEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEE
T ss_pred ceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEe
Confidence 87554 55788999999999 999999988 899999998877655544 9999999999999998 677776
Q ss_pred cCCCeEEEEEcCCCcccc--------------ceeeEeecCCceeEEeEEecCCccCCCCcEEE-EEecCCcEEEEECCC
Q 007234 219 VGERYIALWRTDGVKKQS--------------ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVL-AISETGVCYIWYGQN 283 (612)
Q Consensus 219 ~~d~~i~vwd~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-t~s~dg~i~iwd~~~ 283 (612)
.|+.|++||+..+.... ...+..+..+...+..+.|+ |++.+|+ +++.||.|++||+.+
T Consensus 280 -~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s-----~~~~~l~~s~~~d~~i~iw~~~~ 353 (357)
T 3i2n_A 280 -GAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWS-----PDKRGLCVCSSFDQTVRVLIVTK 353 (357)
T ss_dssp -TTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEEC-----SSSTTEEEEEETTSEEEEEEECC
T ss_pred -CCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEc-----CCCCeEEEEecCCCcEEEEECCC
Confidence 79999999998654321 12345555566677788887 9999888 799999999999987
Q ss_pred cce
Q 007234 284 IEE 286 (612)
Q Consensus 284 ~~~ 286 (612)
.+.
T Consensus 354 ~~~ 356 (357)
T 3i2n_A 354 LNK 356 (357)
T ss_dssp ---
T ss_pred ccc
Confidence 654
No 90
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.1e-30 Score=273.67 Aligned_cols=297 Identities=12% Similarity=0.105 Sum_probs=224.2
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCcEEEEe-eccCCccccccccc-cccccccccceeEEEeeecccccccccCCcEE
Q 007234 12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEF-ADIASTETTSLYGN-RLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (612)
Q Consensus 12 ~fspdg~~las~s~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~s~-~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (612)
.|+|+++.+++++ .|+ .+++.+..+ .+|.+.+.++.|++ + +.++
T Consensus 34 ~f~~~~~~~~~~~------~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~---------------------------~~~l 79 (437)
T 3gre_A 34 EFGPIQEIVRSPN------MGN-LRGKLIATLMENEPNSITSSAVSPGE---------------------------TPYL 79 (437)
T ss_dssp GGCCCCCCCCCCC------GGG-CCCCEEEEECTTTTSCEEEEEEECSS---------------------------SCEE
T ss_pred hcCCccccccccc------ccc-ccceEEeeeccCCCCceEEEEECCCC---------------------------CCEE
Confidence 5889998888765 488 467888888 77777666666665 4 7899
Q ss_pred EEEECCCcEEEEEcCC---CeEEE-EeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECC---CCceeEEEec-----
Q 007234 90 VLGTGGGDVLALAVSA---GQLKW-RLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL---TGSLLGKFRA----- 157 (612)
Q Consensus 90 ~~gs~~g~I~vwd~~~---~~~~~-~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~---~~~~~~~~~~----- 157 (612)
++|+.||.|++||+.+ +.... ....+|...|++++|+|+++.|++|+.||+|++||+. +++....+..
T Consensus 80 ~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~ 159 (437)
T 3gre_A 80 ITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRK 159 (437)
T ss_dssp EEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred EEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEE
Confidence 9999999999999977 43211 1112599999999999999999999999999999994 5555444332
Q ss_pred -------CCCCeeEEE--ECCCCCEEEEeC--CeEEEEEcCCCeeEEEEec--CCCCEEEEEEeeCCcEEEEEEcCCCeE
Q 007234 158 -------STKGISCMA--VSSDGKMLATAA--GQLKTFNCSDHKKMQKFSG--HPGAVRFMTFSDNGKYVLSSAVGERYI 224 (612)
Q Consensus 158 -------~~~~v~~l~--~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~--h~~~v~~l~~sp~~~~l~s~s~~d~~i 224 (612)
+...+.++. ++|++.++++++ |.|++||+++++.+..+.+ |...|.+++|+|++++|++++ .|+.|
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~-~dg~i 238 (437)
T 3gre_A 160 INLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGT-TRGII 238 (437)
T ss_dssp EEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEE-TTSCE
T ss_pred EEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEc-CCCeE
Confidence 344666776 668899999988 8999999999999999988 899999999999999999998 79999
Q ss_pred EEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccC
Q 007234 225 ALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNS 304 (612)
Q Consensus 225 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s 304 (612)
++||+++++.. ..+...+. ..+..+.+.+ .+++++.+|++++.||.|++||+.+++.+.........+.... ++
T Consensus 239 ~iwd~~~~~~~---~~~~~~~~-~~v~~~~~~~-~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~ 312 (437)
T 3gre_A 239 DIWDIRFNVLI---RSWSFGDH-APITHVEVCQ-FYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEH-FL 312 (437)
T ss_dssp EEEETTTTEEE---EEEBCTTC-EEEEEEEECT-TTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGG-GS
T ss_pred EEEEcCCccEE---EEEecCCC-CceEEEEecc-ccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccce-ec
Confidence 99999987633 22222344 3556664442 1237889999999999999999999887765544332222221 44
Q ss_pred CCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeec--cCCCeEEEEecCCCceEeccccceeeecceeeec
Q 007234 305 KSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILV--NSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN 381 (612)
Q Consensus 305 ~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~--h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~~~ 381 (612)
|+++ .+... .+.+ |...|.+++|+ ++.+| ++|+.|+.+++|++.+
T Consensus 313 ~~~~----~l~~~--------------------------~~~~~~~~~~v~~l~~~-~~~~l-~s~~~d~~i~~wd~~~ 359 (437)
T 3gre_A 313 PIEK----GLEEL--------------------------NFCGIRSLNALSTISVS-NDKIL-LTDEATSSIVMFSLNE 359 (437)
T ss_dssp CBCS----SGGGC--------------------------CCCCCCSGGGGCCEEEE-TTEEE-EEEGGGTEEEEEETTC
T ss_pred cccc----ccccc--------------------------eecccccCCceEEEEEC-CceEE-EecCCCCeEEEEECCC
Confidence 4433 11000 1233 77889999999 88888 9999999999999854
No 91
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.97 E-value=1e-29 Score=256.49 Aligned_cols=234 Identities=13% Similarity=0.097 Sum_probs=187.7
Q ss_pred CcEEEEEECCCcEEEEEcCCCeE-EEEeccCCCCCeEEEEEec--CCCEEEEEecCCcEEEEECCCC--ceeEEEecCCC
Q 007234 86 SSLLVLGTGGGDVLALAVSAGQL-KWRLSDCHPGGVSAISFAT--HGSCIYSAGADGMVCEIDPLTG--SLLGKFRASTK 160 (612)
Q Consensus 86 ~~~l~~gs~~g~I~vwd~~~~~~-~~~~~~~h~~~V~~l~~sp--~~~~l~s~s~dg~v~iwd~~~~--~~~~~~~~~~~ 160 (612)
+++|++|+.||.|++||+.++.. ....+.+|...|++++|+| ++++|++|+.|++|++||++++ +....+.+|..
T Consensus 25 g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~ 104 (316)
T 3bg1_A 25 GTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDS 104 (316)
T ss_dssp GCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSS
T ss_pred CCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCC
Confidence 78999999999999999998753 2233468999999999975 4889999999999999999887 46677888999
Q ss_pred CeeEEEECCC--CCEEEEeC--CeEEEEEcCCCee---EEEEecCCCCEEEEEEeeC-----------------CcEEEE
Q 007234 161 GISCMAVSSD--GKMLATAA--GQLKTFNCSDHKK---MQKFSGHPGAVRFMTFSDN-----------------GKYVLS 216 (612)
Q Consensus 161 ~v~~l~~spd--g~~l~~~~--g~i~lwd~~~~~~---~~~~~~h~~~v~~l~~sp~-----------------~~~l~s 216 (612)
.|.+++|+|+ +.+|++++ +.|++||++++.. ...+.+|...|.+++|+|+ +++|++
T Consensus 105 ~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 184 (316)
T 3bg1_A 105 SVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFAS 184 (316)
T ss_dssp CCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEEC
T ss_pred ceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEE
Confidence 9999999998 88999998 8999999987632 3455789999999999997 367888
Q ss_pred EEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCC----cEEEEEecCCcEEEEECCCcceecccCC
Q 007234 217 SAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAG----LYVLAISETGVCYIWYGQNIEELRNTKA 292 (612)
Q Consensus 217 ~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~t~s~dg~i~iwd~~~~~~~~~~~~ 292 (612)
++ .|+.|++||+...... .....+..+...+..+.|+ |++ .+|++++.||+|++|++.+...-.
T Consensus 185 gs-~D~~v~lWd~~~~~~~--~~~~~l~~h~~~V~~v~~s-----p~~~~~~~~las~s~D~~v~iw~~~~~~~~~---- 252 (316)
T 3bg1_A 185 GG-CDNLIKLWKEEEDGQW--KEEQKLEAHSDWVRDVAWA-----PSIGLPTSTIASCSQDGRVFIWTCDDASSNT---- 252 (316)
T ss_dssp CB-TTSBCCEEEECTTSCE--EEEECCBCCSSCEEEEECC-----CCSSCSCCEEEEEETTCEEEEEECSSTTCCC----
T ss_pred ec-CCCeEEEEEeCCCCcc--ceeeecccCCCceEEEEec-----CCCCCCCceEEEEcCCCeEEEEEccCccccc----
Confidence 87 7999999999754311 1334455566667788887 775 899999999999999976532100
Q ss_pred ceeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEecccccee
Q 007234 293 TKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLK 372 (612)
Q Consensus 293 ~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~ 372 (612)
.. .+.+..|...|.+++|+|||.+| ++++.|+
T Consensus 253 --------------~~---------------------------------~~~~~~~~~~v~~v~~sp~g~~l-as~~~D~ 284 (316)
T 3bg1_A 253 --------------WS---------------------------------PKLLHKFNDVVWHVSWSITANIL-AVSGGDN 284 (316)
T ss_dssp --------------CB---------------------------------CCEEEECSSCEEEEEECTTTCCE-EEEESSS
T ss_pred --------------hh---------------------------------hhhhhcCCCcEEEEEEcCCCCEE-EEEcCCC
Confidence 00 00223466789999999999999 9999999
Q ss_pred eecceee
Q 007234 373 SKRGRYV 379 (612)
Q Consensus 373 ~~~~w~~ 379 (612)
++++|+.
T Consensus 285 ~v~lw~~ 291 (316)
T 3bg1_A 285 KVTLWKE 291 (316)
T ss_dssp CEEEEEE
T ss_pred eEEEEEE
Confidence 9999986
No 92
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.9e-29 Score=257.76 Aligned_cols=257 Identities=13% Similarity=0.132 Sum_probs=206.5
Q ss_pred cEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEECCCcEEEEEcC--CCeEEEEeccC
Q 007234 38 QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVS--AGQLKWRLSDC 115 (612)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~--~~~~~~~~~~~ 115 (612)
+++..+.+|...+.++.|+++ +.+|++|+.||.|++||+. +++.+..+ .+
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~---------------------------~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~ 53 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAVLDYY---------------------------GKRLATCSSDKTIKIFEVEGETHKLIDTL-TG 53 (379)
T ss_dssp ---CCEEECCCCEEEEEECSS---------------------------SSEEEEEETTSCEEEEEEETTEEEEEEEE-CC
T ss_pred CccEEecCCcccEEEEEEcCC---------------------------CCEEEEEECCCcEEEEecCCCcceeeeEe-cC
Confidence 445566777776666666665 8899999999999999998 44455444 67
Q ss_pred CCCCeEEEEEecC--CCEEEEEecCCcEEEEECCCCc--eeEEEecCCCCeeEEEECCC--CCEEEEeC--CeEEEEEcC
Q 007234 116 HPGGVSAISFATH--GSCIYSAGADGMVCEIDPLTGS--LLGKFRASTKGISCMAVSSD--GKMLATAA--GQLKTFNCS 187 (612)
Q Consensus 116 h~~~V~~l~~sp~--~~~l~s~s~dg~v~iwd~~~~~--~~~~~~~~~~~v~~l~~spd--g~~l~~~~--g~i~lwd~~ 187 (612)
|...|++++|+|+ +++|++|+.||.|++||+.+++ .+..+..|...|.+++|+|+ +.++++++ |.|++||++
T Consensus 54 h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~ 133 (379)
T 3jrp_A 54 HEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFK 133 (379)
T ss_dssp CSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECC
T ss_pred CCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecC
Confidence 9999999999977 8999999999999999999987 77778888999999999999 99999988 899999998
Q ss_pred CCe--eEEEEecCCCCEEEEEEee-------------CCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEe
Q 007234 188 DHK--KMQKFSGHPGAVRFMTFSD-------------NGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDC 252 (612)
Q Consensus 188 ~~~--~~~~~~~h~~~v~~l~~sp-------------~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 252 (612)
++. ....+.+|...|.+++|+| ++.++++++ .|+.|++||+.++... ......+..+...+..
T Consensus 134 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~-~~~~~~~~~h~~~v~~ 211 (379)
T 3jrp_A 134 ENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGG-ADNLVKIWKYNSDAQT-YVLESTLEGHSDWVRD 211 (379)
T ss_dssp TTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEE-TTSCEEEEEEETTTTE-EEEEEEECCCSSCEEE
T ss_pred CCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEe-CCCeEEEEEecCCCcc-eeeEEEEecccCcEeE
Confidence 873 4556788999999999999 689999987 7999999999876533 1234455556666778
Q ss_pred EEecCCccCCC---CcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhcccccceecCCCce
Q 007234 253 RCIDNGGVDDA---GLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVH 329 (612)
Q Consensus 253 ~~~~~~~~~~~---~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~ 329 (612)
+.|+ |+ +.+|++++.||.|++||+.++.... .....
T Consensus 212 ~~~s-----p~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-----~~~~~------------------------------- 250 (379)
T 3jrp_A 212 VAWS-----PTVLLRSYLASVSQDRTCIIWTQDNEQGPW-----KKTLL------------------------------- 250 (379)
T ss_dssp EEEC-----CCCSSSEEEEEEETTSCEEEEEESSTTSCC-----EEEES-------------------------------
T ss_pred EEEC-----CCCCCCCeEEEEeCCCEEEEEeCCCCCccc-----eeeee-------------------------------
Confidence 8887 88 8999999999999999987653210 00000
Q ss_pred EEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceeee
Q 007234 330 TFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (612)
Q Consensus 330 ~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~~ 380 (612)
....|...|.+++|+|||++| ++++.|+.+++|++.
T Consensus 251 --------------~~~~~~~~v~~~~~s~~g~~l-~~~~~dg~i~iw~~~ 286 (379)
T 3jrp_A 251 --------------KEEKFPDVLWRASWSLSGNVL-ALSGGDNKVTLWKEN 286 (379)
T ss_dssp --------------SSSCCSSCEEEEEECSSSCCE-EEEESSSSEEEEEEE
T ss_pred --------------ccccCCCcEEEEEEcCCCCEE-EEecCCCcEEEEeCC
Confidence 112355679999999999999 999999999999985
No 93
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.7e-30 Score=275.48 Aligned_cols=245 Identities=9% Similarity=0.124 Sum_probs=188.7
Q ss_pred CcccceeEEEEcCC------CCEEEEEeCCCcEEEEECCCCcEE-----------EEeeccCCccccccccccccccccc
Q 007234 3 SSNIRDILTSFSPA------LDYFAICSGDARIKIWDTLKGQVQ-----------TEFADIASTETTSLYGNRLEREHLS 65 (612)
Q Consensus 3 s~~V~~l~~~fspd------g~~las~s~dg~i~iwd~~~~~~~-----------~~~~~~~~~~~~~~~s~~~~~~~~~ 65 (612)
.+.|+.+ +|+|+ +.+||+++.||+|+|||+.++... ..+.+| .
T Consensus 207 ~~~V~~v--~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h------------------~ 266 (524)
T 2j04_B 207 FGEVWDL--KWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLA------------------D 266 (524)
T ss_dssp CCSEEEE--EECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCT------------------T
T ss_pred CCcEEEE--EECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcC------------------C
Confidence 3567555 99997 579999999999999999876422 122222 2
Q ss_pred cceeEEEeeecccccccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEE--EEecCC-CEEEEEecCCcEE
Q 007234 66 VDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAI--SFATHG-SCIYSAGADGMVC 142 (612)
Q Consensus 66 ~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l--~~sp~~-~~l~s~s~dg~v~ 142 (612)
..++++.|.+ +..|++|+.||+|++||+.++........+|...|+++ .|+|++ .+|+|||.|++|+
T Consensus 267 ~~v~sv~~s~----------~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvk 336 (524)
T 2j04_B 267 SLITTFDFLS----------PTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFY 336 (524)
T ss_dssp TCEEEEEESS----------SSEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEE
T ss_pred CCEEEEEecC----------CCeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEE
Confidence 3566777764 34799999999999999998754333346899999999 578887 8999999999999
Q ss_pred EEECCCCceeEEEecCCC--CeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEE
Q 007234 143 EIDPLTGSLLGKFRASTK--GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSA 218 (612)
Q Consensus 143 iwd~~~~~~~~~~~~~~~--~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s 218 (612)
+||++++++...+.+|.. .|.+++|+|+++.+++++ ++|++||++++.++..+.+|.+.|++++|+|+|++|++++
T Consensus 337 lWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs 416 (524)
T 2j04_B 337 IFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGS 416 (524)
T ss_dssp EECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEE
T ss_pred EEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEE
Confidence 999999888777776653 588999999999999887 7999999999998888999999999999999999999987
Q ss_pred cCCCeEEEEEcCCCcccc---------------------------------------ceeeEeecCCceeEEeEEecCCc
Q 007234 219 VGERYIALWRTDGVKKQS---------------------------------------ASCVLAMEHPAVFMDCRCIDNGG 259 (612)
Q Consensus 219 ~~d~~i~vwd~~~~~~~~---------------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 259 (612)
.|++|++||+....... ..+...+..+...+..++|+
T Consensus 417 -~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafs--- 492 (524)
T 2j04_B 417 -ADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWN--- 492 (524)
T ss_dssp -TTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEEC---
T ss_pred -CCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECC---
Confidence 79999999965321110 00011111222334455665
Q ss_pred cCCCC---cEEEEEecCCcEEEEECCC
Q 007234 260 VDDAG---LYVLAISETGVCYIWYGQN 283 (612)
Q Consensus 260 ~~~~~---~~l~t~s~dg~i~iwd~~~ 283 (612)
|++ .++++|+.||.|+||++.-
T Consensus 493 --p~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 493 --ETSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp --CSTTTTTEEEEECTTSEEEEEECSC
T ss_pred --CCCCccHHHHhhccCceEEEEEccc
Confidence 774 5999999999999999753
No 94
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1e-28 Score=261.97 Aligned_cols=256 Identities=13% Similarity=0.051 Sum_probs=197.1
Q ss_pred cccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCc---EEEEeeccCCcccccccccc----------c-----------
Q 007234 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ---VQTEFADIASTETTSLYGNR----------L----------- 59 (612)
Q Consensus 4 ~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~---~~~~~~~~~~~~~~~~~s~~----------~----------- 59 (612)
.|+..+ +|+|||++|++++ ++.|++||+.+|+ .+..+..+........+... .
T Consensus 5 ~p~~~v--~~s~dg~~l~~~~-~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (450)
T 2vdu_B 5 HPLQNL--LTSRDGSLVFAII-KNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKG 81 (450)
T ss_dssp CCCCEE--EECSSSSEEEEEE-TTEEEEEEEETTTEEEEEEEEECCC---------------------------------
T ss_pred ccEEEE--EecCCCCEEEEEe-CCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcC
Confidence 577655 9999999776664 7899999999999 77777654331111111000 0
Q ss_pred -----------ccc----ccccceeEEEeeecccccccccCCcE-EEEEECCCcEEEEEcC--CCeEEEEec-cCCCCCe
Q 007234 60 -----------ERE----HLSVDYTCMKWLSVDRKKKRKLGSSL-LVLGTGGGDVLALAVS--AGQLKWRLS-DCHPGGV 120 (612)
Q Consensus 60 -----------~~~----~~~~~~~~~~w~~~~~~~~~~~~~~~-l~~gs~~g~I~vwd~~--~~~~~~~~~-~~h~~~V 120 (612)
..+ .....+.++.|.+. +.+ +++|+.||.|++||+. +++.+..+. ..|...|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d---------~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v 152 (450)
T 2vdu_B 82 DSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSD---------ESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRP 152 (450)
T ss_dssp ------------------CCCCCEEEEEECTT---------SSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCE
T ss_pred ccccccCccccCCCCCCCccCCceEEEEEcCC---------CCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCc
Confidence 000 01124778888775 566 4889999999999999 787776553 2577899
Q ss_pred EEEEEecCCCEEEEEecCCcEEEEECCCCceeE----EEecCCCCeeEEEECCC---CCEEEEeC--CeEEEEEcCCCee
Q 007234 121 SAISFATHGSCIYSAGADGMVCEIDPLTGSLLG----KFRASTKGISCMAVSSD---GKMLATAA--GQLKTFNCSDHKK 191 (612)
Q Consensus 121 ~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~----~~~~~~~~v~~l~~spd---g~~l~~~~--g~i~lwd~~~~~~ 191 (612)
++++|+|++++|++|+.||.|++|++.+++... .+.+|...|.+++|+|+ +++|++++ +.|++||+++++.
T Consensus 153 ~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~ 232 (450)
T 2vdu_B 153 NAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFI 232 (450)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTC
T ss_pred eEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCce
Confidence 999999999999999999999999998877554 77889999999999999 99999988 8999999999988
Q ss_pred EEE-EecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeec-----------------------CCc
Q 007234 192 MQK-FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME-----------------------HPA 247 (612)
Q Consensus 192 ~~~-~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~-----------------------~~~ 247 (612)
+.. +.+|...|.+++|+ ++++|++++ .|+.|++||+.+++.. ..+... ...
T Consensus 233 ~~~~~~~h~~~v~~~~~s-d~~~l~s~~-~d~~v~vwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (450)
T 2vdu_B 233 VDKWLFGHKHFVSSICCG-KDYLLLSAG-GDDKIFAWDWKTGKNL---STFDYNSLIKPYLNDQHLAPPRFQNENNDIIE 307 (450)
T ss_dssp EEEECCCCSSCEEEEEEC-STTEEEEEE-SSSEEEEEETTTCCEE---EEEECHHHHGGGCCTTSBC----------CBC
T ss_pred eeeeecCCCCceEEEEEC-CCCEEEEEe-CCCeEEEEECCCCcEe---eeecchhhhhhhhhhcccccccccccccccce
Confidence 877 56899999999999 999999998 7999999999988744 111111 112
Q ss_pred eeEEeEEecCCccCCCCcEEEEEe-cCCcEEEEEC
Q 007234 248 VFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYG 281 (612)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~l~t~s-~dg~i~iwd~ 281 (612)
..+..+.+. |++++|++++ .|+.|++|++
T Consensus 308 ~~v~~i~~~-----~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 308 FAVSKIIKS-----KNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp CCEEEEEEC-----SSSSEEEEEETTCSEEEEEEE
T ss_pred EEEEEEEEe-----CCCCEEEEEECCCCeEEEEEe
Confidence 345566676 8999999999 8999999997
No 95
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.97 E-value=1e-29 Score=262.74 Aligned_cols=197 Identities=11% Similarity=0.139 Sum_probs=156.0
Q ss_pred CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCc---EEEEeeccCCccccccccccccccccccceeEEEeeeccc
Q 007234 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ---VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDR 78 (612)
Q Consensus 2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~---~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~ 78 (612)
+..+|.++ +|+|+|++|++++.||+|++||+.+++ ....+.+|...+.++.|+++
T Consensus 54 h~~~v~~~--~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-------------------- 111 (377)
T 3dwl_C 54 HDKIVTCV--DWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPN-------------------- 111 (377)
T ss_dssp CSSCEEEE--EECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTT--------------------
T ss_pred CCceEEEE--EEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCC--------------------
Confidence 45678555 999999999999999999999999887 56666666665555555554
Q ss_pred ccccccCCcEEEEEECCCcEEEEEcCCCeE---EEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECC--------
Q 007234 79 KKKRKLGSSLLVLGTGGGDVLALAVSAGQL---KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL-------- 147 (612)
Q Consensus 79 ~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~---~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~-------- 147 (612)
+.++++|+.||.|++||+.+++. ...+...|...|++++|+|++++|++++.|++|++||+.
T Consensus 112 -------~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 184 (377)
T 3dwl_C 112 -------EDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKP 184 (377)
T ss_dssp -------SSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CC
T ss_pred -------CCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCc
Confidence 77899999999999999998873 555544499999999999999999999999999999985
Q ss_pred ----------CCceeEEEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCee----EEEEecCCCCEEEEEEeeCC
Q 007234 148 ----------TGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKK----MQKFSGHPGAVRFMTFSDNG 211 (612)
Q Consensus 148 ----------~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~----~~~~~~h~~~v~~l~~sp~~ 211 (612)
.++++..+ .|...|.+++|+|+|++|++++ |.|++||+++++. +..+.+|..+|.+++|+|++
T Consensus 185 ~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 263 (377)
T 3dwl_C 185 EASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANES 263 (377)
T ss_dssp CSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETT
T ss_pred cccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCC
Confidence 34556666 7888999999999999999987 8999999999987 78889999999999999999
Q ss_pred cEEEEEEcCCCeEEEEEcC
Q 007234 212 KYVLSSAVGERYIALWRTD 230 (612)
Q Consensus 212 ~~l~s~s~~d~~i~vwd~~ 230 (612)
++|++++ .++.+ +|+..
T Consensus 264 ~~l~~~~-~~~~~-~~~~~ 280 (377)
T 3dwl_C 264 AIVAAGY-NYSPI-LLQGN 280 (377)
T ss_dssp EEEEEES-SSSEE-EECCC
T ss_pred CEEEEEc-CCcEE-EEEeC
Confidence 9888775 45554 77665
No 96
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.4e-28 Score=249.54 Aligned_cols=243 Identities=14% Similarity=0.154 Sum_probs=205.3
Q ss_pred CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (612)
Q Consensus 2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (612)
+..+|.++ +|+|++++|++++.||.|++||+.+++.+..+. +...+.++.|+++
T Consensus 73 h~~~v~~~--~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~----------------------- 126 (369)
T 3zwl_B 73 HTGTIWSI--DVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPC----------------------- 126 (369)
T ss_dssp CSSCEEEE--EECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTT-----------------------
T ss_pred cCCcEEEE--EEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccC-----------------------
Confidence 45677555 999999999999999999999999999988876 4444444444443
Q ss_pred cccCCcEEEEEECC-----CcEEEEEcCCCeE-----------EEEeccCCCC--CeEEEEEecCCCEEEEEecCCcEEE
Q 007234 82 RKLGSSLLVLGTGG-----GDVLALAVSAGQL-----------KWRLSDCHPG--GVSAISFATHGSCIYSAGADGMVCE 143 (612)
Q Consensus 82 ~~~~~~~l~~gs~~-----g~I~vwd~~~~~~-----------~~~~~~~h~~--~V~~l~~sp~~~~l~s~s~dg~v~i 143 (612)
+.++++++.+ |.|.+||+..+.. ...+ ..|.. .+.+++|+|+++.|++++.||.|++
T Consensus 127 ----~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i 201 (369)
T 3zwl_B 127 ----GNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKI-ITHEGLDAATVAGWSTKGKYIIAGHKDGKISK 201 (369)
T ss_dssp ----SSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEE-ECCTTCCCEEEEEECGGGCEEEEEETTSEEEE
T ss_pred ----CCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeec-cCCcCccceeEEEEcCCCCEEEEEcCCCEEEE
Confidence 7889999999 9999999976532 1122 34555 8999999999999999999999999
Q ss_pred EECCC-CceeEEEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcC
Q 007234 144 IDPLT-GSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVG 220 (612)
Q Consensus 144 wd~~~-~~~~~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~ 220 (612)
||+.+ ++.+..+..|...|.+++|+|++++|++++ |.|++||+++++.+..+. +...+.+++|+|+++++++++ .
T Consensus 202 ~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-~ 279 (369)
T 3zwl_B 202 YDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGG-G 279 (369)
T ss_dssp EETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEE-C
T ss_pred EECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecCCCceEEEee-c
Confidence 99998 788889999999999999999999999987 899999999999988887 788999999999999999987 5
Q ss_pred CC--------------eEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcce
Q 007234 221 ER--------------YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE 286 (612)
Q Consensus 221 d~--------------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~ 286 (612)
++ .+++||+.+++.. ..+..+...+..+.|+ |++++|++++.||.|++|+++++..
T Consensus 280 ~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-----~~~~~~~~~v~~~~~s-----~~~~~l~s~~~dg~v~iw~~~~~~~ 349 (369)
T 3zwl_B 280 QEAKDVTTTSANEGKFEARFYHKIFEEEI-----GRVQGHFGPLNTVAIS-----PQGTSYASGGEDGFIRLHHFEKSYF 349 (369)
T ss_dssp CC-------------CEEEEEETTTCCEE-----EEEECCSSCEEEEEEC-----TTSSEEEEEETTSEEEEEEECHHHH
T ss_pred CCCceEEEEecCCCcceeEEEecCCCcch-----hheecccCcEEEEEEC-----CCCCEEEEEcCCCeEEEEECccccc
Confidence 66 8999999888643 4445556667778887 9999999999999999999987754
Q ss_pred e
Q 007234 287 L 287 (612)
Q Consensus 287 ~ 287 (612)
.
T Consensus 350 ~ 350 (369)
T 3zwl_B 350 D 350 (369)
T ss_dssp T
T ss_pred h
Confidence 3
No 97
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.97 E-value=5.8e-28 Score=253.82 Aligned_cols=244 Identities=16% Similarity=0.286 Sum_probs=202.4
Q ss_pred CcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccc
Q 007234 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (612)
Q Consensus 3 s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (612)
...|+++ +|+|||++||+|+.||+|+|||+.+++++..+.+|...+. ++.|.
T Consensus 147 ~~~V~sv--~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~------------------~~s~~-------- 198 (420)
T 4gga_A 147 GEYISSV--AWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVG------------------SLSWN-------- 198 (420)
T ss_dssp TCCEEEE--EECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE------------------EEEEE--------
T ss_pred CCcEEEE--EECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceE------------------EEeeC--------
Confidence 3457545 9999999999999999999999999999999887655433 34442
Q ss_pred ccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCc----eeEEEecC
Q 007234 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS----LLGKFRAS 158 (612)
Q Consensus 83 ~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~----~~~~~~~~ 158 (612)
+.++++|+.++.+++||............+|...+..+.|+|+++++++++.|+.|++||..+++ .+.....|
T Consensus 199 ---~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~ 275 (420)
T 4gga_A 199 ---SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQH 275 (420)
T ss_dssp ---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCC
T ss_pred ---CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeeccc
Confidence 67899999999999999988665545557899999999999999999999999999999998775 35667778
Q ss_pred CCCeeEEEECCCCC-EEEEeC----CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEE-cCCCeEEEEEcCCC
Q 007234 159 TKGISCMAVSSDGK-MLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSA-VGERYIALWRTDGV 232 (612)
Q Consensus 159 ~~~v~~l~~spdg~-~l~~~~----g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s-~~d~~i~vwd~~~~ 232 (612)
...|.+++|+|++. ++++++ +.|++||+.++++...+..| ..+.++.|+|+++.+++++ ..|+.|++||+.++
T Consensus 276 ~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~ 354 (420)
T 4gga_A 276 QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM 354 (420)
T ss_dssp SSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC
T ss_pred CCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCCC
Confidence 88999999999654 555432 79999999999999888755 5788999999999888764 35899999999988
Q ss_pred ccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceec
Q 007234 233 KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR 288 (612)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~ 288 (612)
+. +..+..|...+..++|+ |+|.+|++|+.||+|++||+......+
T Consensus 355 ~~-----v~~l~gH~~~V~~l~~s-----pdg~~l~S~s~D~tvriWdv~~~~~~~ 400 (420)
T 4gga_A 355 AK-----VAELKGHTSRVLSLTMS-----PDGATVASAAADETLRLWRCFELDPAR 400 (420)
T ss_dssp CE-----EEEECCCSSCEEEEEEC-----TTSSCEEEEETTTEEEEECCSCSSCC-
T ss_pred cE-----EEEEcCCCCCEEEEEEc-----CCCCEEEEEecCCeEEEEECCCCCccc
Confidence 64 35566666677888887 999999999999999999987665443
No 98
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.5e-28 Score=250.88 Aligned_cols=234 Identities=14% Similarity=0.079 Sum_probs=184.4
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEE
Q 007234 12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL 91 (612)
Q Consensus 12 ~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~ 91 (612)
.+.+|+.+|++|+.||+|++||+.+++.+..+. ...+..+.|.+ . +++
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~-----------------------------~-~~s 90 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHP-----------------------------A-IIS 90 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCC-----------------------------S-EEE
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCC-----------------------------c-eEE
Confidence 456788999999999999999999999888775 22233222221 2 788
Q ss_pred EECCCcEEEEEcC---------CCeEEEEeccCCCCCeEEEEEec--CCCEEEEEecCCcEEEEECCCCceeEEEec-CC
Q 007234 92 GTGGGDVLALAVS---------AGQLKWRLSDCHPGGVSAISFAT--HGSCIYSAGADGMVCEIDPLTGSLLGKFRA-ST 159 (612)
Q Consensus 92 gs~~g~I~vwd~~---------~~~~~~~~~~~h~~~V~~l~~sp--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~-~~ 159 (612)
|+.|+.|++|+.. +++.+..+..+|...|.+++|+| +++++++|+.||+|++||+++++....+.. +.
T Consensus 91 ~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~ 170 (343)
T 3lrv_A 91 RGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSD 170 (343)
T ss_dssp ECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSS
T ss_pred ecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCC
Confidence 8888888888554 66666666667889999999999 999999999999999999999998777644 44
Q ss_pred CCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeE-EEEec-CCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccc
Q 007234 160 KGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKM-QKFSG-HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ 235 (612)
Q Consensus 160 ~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~-~~~~~-h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~ 235 (612)
..+.+++|+|+|.++++|+ |.|++||+++++.+ ..+.+ |.++|.+++|+|++.+|++++ .+ .|++||+++.+..
T Consensus 171 ~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~-~v~iwd~~~~~~~ 248 (343)
T 3lrv_A 171 VEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQ-TVVCFDLRKDVGT 248 (343)
T ss_dssp CCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SS-BEEEEETTSSTTC
T ss_pred CceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CC-eEEEEEcCCCCcc
Confidence 5899999999999999987 99999999999887 78888 999999999999999999987 34 9999999987643
Q ss_pred cceeeEeecCCceeE--EeEEecCCccCCCCcEEEEEec-CCcEEEEECCCcce
Q 007234 236 SASCVLAMEHPAVFM--DCRCIDNGGVDDAGLYVLAISE-TGVCYIWYGQNIEE 286 (612)
Q Consensus 236 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~t~s~-dg~i~iwd~~~~~~ 286 (612)
.. +..+..+...+ .+++|+ |+|++|++++. |+.|++|++.+...
T Consensus 249 ~~--~~~~~~~~~~~~~~~~~~~-----~~g~~l~~~s~~d~~i~v~~~~~~~~ 295 (343)
T 3lrv_A 249 LA--YPTYTIPEFKTGTVTYDID-----DSGKNMIAYSNESNSLTIYKFDKKTK 295 (343)
T ss_dssp BS--SCCCBC-----CCEEEEEC-----TTSSEEEEEETTTTEEEEEEECTTTC
T ss_pred ee--ecccccccccccceEEEEC-----CCCCEEEEecCCCCcEEEEEEccccc
Confidence 11 11111111111 357777 99999999998 99999999876543
No 99
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.3e-27 Score=239.70 Aligned_cols=236 Identities=13% Similarity=0.218 Sum_probs=194.5
Q ss_pred CcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCC---cEEEEeeccCCccccccccccccccccccceeEEEeeecccc
Q 007234 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKG---QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK 79 (612)
Q Consensus 3 s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~ 79 (612)
..+|.++ +|+|++++|++++.||.|++|++... +....+.+|... ..++.|.
T Consensus 59 ~~~v~~~--~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~------------------i~~~~~~----- 113 (313)
T 3odt_A 59 QGFLNSV--CYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGN------------------VCSLSFQ----- 113 (313)
T ss_dssp SSCEEEE--EEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSC------------------EEEEEEE-----
T ss_pred CccEEEE--EECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccC------------------EEEEEec-----
Confidence 4677555 99999999999999999999998754 445555544443 3455551
Q ss_pred cccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEec-CCCEEEEEecCCcEEEEECCCCceeEEEec-
Q 007234 80 KKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKFRA- 157 (612)
Q Consensus 80 ~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~- 157 (612)
+.++++|+.+|.|++|| .+.....+ ..|...|.++.|+| +++.+++++.||.|++|| .++....+..
T Consensus 114 ------~~~l~~~~~d~~i~~~d--~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~ 182 (313)
T 3odt_A 114 ------DGVVISGSWDKTAKVWK--EGSLVYNL-QAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGI 182 (313)
T ss_dssp ------TTEEEEEETTSEEEEEE--TTEEEEEE-ECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSS
T ss_pred ------CCEEEEEeCCCCEEEEc--CCcEEEec-ccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEecc
Confidence 67899999999999999 56666555 57999999999998 899999999999999999 5677777777
Q ss_pred CCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccc
Q 007234 158 STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ 235 (612)
Q Consensus 158 ~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~ 235 (612)
+...+.+++|+|++. +++++ |.|++||+++++.+..+.+|..+|.+++|+|++ .+++++ .|+.|++||+.+++..
T Consensus 183 ~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~-~dg~v~iwd~~~~~~~ 259 (313)
T 3odt_A 183 HNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCG-EDRTVRIWSKENGSLK 259 (313)
T ss_dssp CSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEE-TTSEEEEECTTTCCEE
T ss_pred CcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEe-cCCEEEEEECCCCcee
Confidence 788999999999999 55555 899999999999999999999999999999999 477777 7999999999988643
Q ss_pred cceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceec
Q 007234 236 SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR 288 (612)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~ 288 (612)
..+..+...+..+.|+ |+++ +++++.||.|++||+++++...
T Consensus 260 -----~~~~~~~~~i~~~~~~-----~~~~-~~~~~~dg~i~iw~~~~~~~~~ 301 (313)
T 3odt_A 260 -----QVITLPAISIWSVDCM-----SNGD-IIVGSSDNLVRIFSQEKSRWAS 301 (313)
T ss_dssp -----EEEECSSSCEEEEEEC-----TTSC-EEEEETTSCEEEEESCGGGCCC
T ss_pred -----EEEeccCceEEEEEEc-----cCCC-EEEEeCCCcEEEEeCCCCceee
Confidence 3444555566777887 8888 6679999999999998887654
No 100
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.96 E-value=1.9e-28 Score=258.36 Aligned_cols=249 Identities=12% Similarity=0.180 Sum_probs=199.9
Q ss_pred CCcccceeEEEEcCC-CCEEEEEeCCCcEEEEECCC----------CcEEEEeeccCCccccccccccccccccccceeE
Q 007234 2 GSSNIRDILTSFSPA-LDYFAICSGDARIKIWDTLK----------GQVQTEFADIASTETTSLYGNRLEREHLSVDYTC 70 (612)
Q Consensus 2 ~s~~V~~l~~~fspd-g~~las~s~dg~i~iwd~~~----------~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 70 (612)
+.++|+.+ +|+|+ +.+||+++.||.|+|||+.+ ......+.+|...+.++.|++.
T Consensus 127 h~~~v~~l--~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~------------ 192 (430)
T 2xyi_A 127 HEGEVNRA--RYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPN------------ 192 (430)
T ss_dssp ESSCCSEE--EEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTT------------
T ss_pred CCCcEEEE--EECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCC------------
Confidence 35678666 99997 78999999999999999986 5666677766665554444443
Q ss_pred EEeeecccccccccCCc-EEEEEECCCcEEEEEcCCCeE----E--EEeccCCCCCeEEEEEec-CCCEEEEEecCCcEE
Q 007234 71 MKWLSVDRKKKRKLGSS-LLVLGTGGGDVLALAVSAGQL----K--WRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVC 142 (612)
Q Consensus 71 ~~w~~~~~~~~~~~~~~-~l~~gs~~g~I~vwd~~~~~~----~--~~~~~~h~~~V~~l~~sp-~~~~l~s~s~dg~v~ 142 (612)
+. +|++|+.+|.|++|++..+.. + .....+|...|.+++|+| ++..|++++.||.|+
T Consensus 193 ---------------~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~ 257 (430)
T 2xyi_A 193 ---------------LNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLM 257 (430)
T ss_dssp ---------------STTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEE
T ss_pred ---------------CCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEE
Confidence 44 899999999999999987432 1 122357999999999999 678899999999999
Q ss_pred EEECCCC---ceeEEEecCCCCeeEEEECCCCC-EEEEeC--CeEEEEEcCC-CeeEEEEecCCCCEEEEEEeeCCc-EE
Q 007234 143 EIDPLTG---SLLGKFRASTKGISCMAVSSDGK-MLATAA--GQLKTFNCSD-HKKMQKFSGHPGAVRFMTFSDNGK-YV 214 (612)
Q Consensus 143 iwd~~~~---~~~~~~~~~~~~v~~l~~spdg~-~l~~~~--g~i~lwd~~~-~~~~~~~~~h~~~v~~l~~sp~~~-~l 214 (612)
+||++++ +.+..+..|...|++++|+|+++ ++++|+ |.|++||+++ ++++..+.+|...|.+++|+|+++ ++
T Consensus 258 i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l 337 (430)
T 2xyi_A 258 IWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETIL 337 (430)
T ss_dssp EEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEE
T ss_pred EEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEE
Confidence 9999987 57788888999999999999987 577776 8999999998 567889999999999999999996 56
Q ss_pred EEEEcCCCeEEEEEcCCCcccc---------ceeeEeecCCceeEEeEEecCCccCCCCc-EEEEEecCCcEEEEECCCc
Q 007234 215 LSSAVGERYIALWRTDGVKKQS---------ASCVLAMEHPAVFMDCRCIDNGGVDDAGL-YVLAISETGVCYIWYGQNI 284 (612)
Q Consensus 215 ~s~s~~d~~i~vwd~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~t~s~dg~i~iwd~~~~ 284 (612)
++++ .|+.|++||+....... ...++....+...+..+.|+ |++. ++++++.||.|++|++...
T Consensus 338 ~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-----p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 338 ASSG-TDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWN-----PNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp EEEE-TTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEEC-----SSSTTEEEEEETTSEEEEEEECHH
T ss_pred EEEe-CCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEEC-----CCCCCEEEEEECCCCEEEeEcccc
Confidence 7766 79999999998732110 12345555556667778887 8888 8999999999999998655
Q ss_pred c
Q 007234 285 E 285 (612)
Q Consensus 285 ~ 285 (612)
.
T Consensus 412 ~ 412 (430)
T 2xyi_A 412 V 412 (430)
T ss_dssp H
T ss_pred c
Confidence 3
No 101
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.96 E-value=1.4e-28 Score=255.00 Aligned_cols=240 Identities=16% Similarity=0.190 Sum_probs=188.8
Q ss_pred CCcccceeEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccc
Q 007234 2 GSSNIRDILTSFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (612)
Q Consensus 2 ~s~~V~~l~~~fsp-dg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~ 80 (612)
+..+|.++ +|+| ++++|++++.||.|++||+.+ .....+..+.. ....+.++.|.+.
T Consensus 117 h~~~v~~~--~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~---------------~~~~v~~~~~~~~---- 174 (383)
T 3ei3_B 117 PGDAITGM--KFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDS---------------WDYWYCCVDVSVS---- 174 (383)
T ss_dssp TTCBEEEE--EEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCC---------------SSCCEEEEEEETT----
T ss_pred cCCceeEE--EeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCC---------------CCCCeEEEEECCC----
Confidence 45677555 9999 789999999999999999985 55555543321 0123556666553
Q ss_pred ccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCC-EEEEEecCCcEEEEECCC----CceeEEE
Q 007234 81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLT----GSLLGKF 155 (612)
Q Consensus 81 ~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~-~l~s~s~dg~v~iwd~~~----~~~~~~~ 155 (612)
+.++++|+.+|.|++||+ +++.+..+ .+|...|.+++|+|+++ +|++|+.|+.|++||+++ +..+..+
T Consensus 175 -----~~~l~~~~~d~~i~i~d~-~~~~~~~~-~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 247 (383)
T 3ei3_B 175 -----RQMLATGDSTGRLLLLGL-DGHEIFKE-KLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM 247 (383)
T ss_dssp -----TTEEEEEETTSEEEEEET-TSCEEEEE-ECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE
T ss_pred -----CCEEEEECCCCCEEEEEC-CCCEEEEe-ccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe
Confidence 789999999999999999 46666565 57999999999999999 899999999999999987 5666666
Q ss_pred ecCCCCeeEEEECC-CCCEEEEeC--CeEEEEEcCCCeeEEEEecCC-----------------CCEEEEEEeeCCcEEE
Q 007234 156 RASTKGISCMAVSS-DGKMLATAA--GQLKTFNCSDHKKMQKFSGHP-----------------GAVRFMTFSDNGKYVL 215 (612)
Q Consensus 156 ~~~~~~v~~l~~sp-dg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~-----------------~~v~~l~~sp~~~~l~ 215 (612)
.|...|.+++|+| ++++|++++ +.|++||+++++....+.+|. ..+..++|+|++++
T Consensus 248 -~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~-- 324 (383)
T 3ei3_B 248 -PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL-- 324 (383)
T ss_dssp -ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--
T ss_pred -cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--
Confidence 5889999999999 999999988 899999999988877777654 33445666777765
Q ss_pred EEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCC
Q 007234 216 SSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN 283 (612)
Q Consensus 216 s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~ 283 (612)
+++ .|+.|++||+.+++.. ..+...++...+.+++|+ |++.+|++++ ||.|++||+++
T Consensus 325 s~s-~d~~i~iwd~~~~~~~---~~l~~~~~~~~~~~~~~s-----~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 325 LLN-DKRTIDIYDANSGGLV---HQLRDPNAAGIISLNKFS-----PTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp CTT-CCCCEEEEETTTCCEE---EEECBTTBCSCCCEEEEC-----TTSSEEEEEE-TTEEEEEECC-
T ss_pred ccC-CCCeEEEEecCCCcee---eeecCCCCCceEEEEEEe-----cCccEEEEec-CCcEEEEecCC
Confidence 444 7999999999988743 222222245666777887 9999999997 99999999864
No 102
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.96 E-value=2.2e-28 Score=255.37 Aligned_cols=247 Identities=14% Similarity=0.200 Sum_probs=200.1
Q ss_pred CCcccceeEEEEcC-CCCEEEEEeCCCcEEEEECCCC-------cEEEEeeccCCccccccccccccccccccceeEEEe
Q 007234 2 GSSNIRDILTSFSP-ALDYFAICSGDARIKIWDTLKG-------QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKW 73 (612)
Q Consensus 2 ~s~~V~~l~~~fsp-dg~~las~s~dg~i~iwd~~~~-------~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w 73 (612)
+.++|.++ +|+| ++++||+|+.||+|+|||+.++ +.+..+.+|...+.++.|+++
T Consensus 80 h~~~V~~~--~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~--------------- 142 (402)
T 2aq5_A 80 HTAPVLDI--AWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPT--------------- 142 (402)
T ss_dssp CSSCEEEE--EECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSS---------------
T ss_pred CCCCEEEE--EeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcC---------------
Confidence 45778555 9999 9999999999999999999988 556777766665555555444
Q ss_pred eecccccccccCCcEEEEEECCCcEEEEEcCCCeEEEEec-cCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCcee
Q 007234 74 LSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLS-DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLL 152 (612)
Q Consensus 74 ~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~-~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~ 152 (612)
. ..++++|+.||.|++||+.+++.+..+. .+|...|++++|+|++++|++++.||.|++||+++++.+
T Consensus 143 ---~--------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 211 (402)
T 2aq5_A 143 ---A--------QNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVV 211 (402)
T ss_dssp ---B--------TTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEE
T ss_pred ---C--------CCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCcee
Confidence 2 3689999999999999999999987774 579999999999999999999999999999999999999
Q ss_pred EEE-ecCCCC-eeEEEECCCCCEEEEe---C--CeEEEEEcCCCee-EEEEe-cCCCCEEEEEEeeCCcEEEEEEcCCCe
Q 007234 153 GKF-RASTKG-ISCMAVSSDGKMLATA---A--GQLKTFNCSDHKK-MQKFS-GHPGAVRFMTFSDNGKYVLSSAVGERY 223 (612)
Q Consensus 153 ~~~-~~~~~~-v~~l~~spdg~~l~~~---~--g~i~lwd~~~~~~-~~~~~-~h~~~v~~l~~sp~~~~l~s~s~~d~~ 223 (612)
..+ ..|... +.++.|+|+++++++| + +.|++||+++++. +.... .|...+.+++|+|+++++++++..|+.
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~ 291 (402)
T 2aq5_A 212 AEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSS 291 (402)
T ss_dssp EEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSC
T ss_pred eeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCe
Confidence 998 677765 8999999999999998 4 8999999998754 33332 577889999999999999877657999
Q ss_pred EEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcc
Q 007234 224 IALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE 285 (612)
Q Consensus 224 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~ 285 (612)
|++||+.+++.. ...+.... +...+..+.|+ |++.++++ .++.+++|++.++.
T Consensus 292 i~i~d~~~~~~~-~~~l~~~~-~~~~v~~~~~s-----p~~~~~~s--~~~~~~~~~l~~~~ 344 (402)
T 2aq5_A 292 IRYFEITSEAPF-LHYLSMFS-SKESQRGMGYM-----PKRGLEVN--KCEIARFYKLHERK 344 (402)
T ss_dssp EEEEEECSSTTC-EEEEEEEC-CSSCCSEEEEC-----CGGGSCGG--GTEEEEEEEEETTE
T ss_pred EEEEEecCCCcc-eEeecccc-cCCcccceEEe-----ccccccee--cceeEEEEEcCCCc
Confidence 999999987631 01222222 33455667787 88888764 56799999988754
No 103
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.96 E-value=1.5e-27 Score=252.55 Aligned_cols=263 Identities=16% Similarity=0.253 Sum_probs=212.9
Q ss_pred CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (612)
Q Consensus 2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (612)
+..+|.++ +|+ +++|++|+.||+|++||+.+++.+..+.+|...+. ++.|.
T Consensus 158 h~~~v~~~--~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~------------------~~~~~------- 208 (445)
T 2ovr_B 158 HTGGVWSS--QMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVR------------------CMHLH------- 208 (445)
T ss_dssp CSSCEEEE--EEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE------------------EEEEE-------
T ss_pred CCCCEEEE--Eec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEE------------------EEEec-------
Confidence 45677544 786 67999999999999999999999999887665544 34442
Q ss_pred cccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCC
Q 007234 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG 161 (612)
Q Consensus 82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~ 161 (612)
+..+++|+.||.|++||+.+++.+..+ .+|...|.+++| +++.+++|+.||.|++||+.+++.+..+.+|...
T Consensus 209 ----~~~l~s~s~dg~i~~wd~~~~~~~~~~-~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 281 (445)
T 2ovr_B 209 ----EKRVVSGSRDATLRVWDIETGQCLHVL-MGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNR 281 (445)
T ss_dssp ----TTEEEEEETTSEEEEEESSSCCEEEEE-ECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSC
T ss_pred ----CCEEEEEeCCCEEEEEECCCCcEEEEE-cCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCc
Confidence 567999999999999999999988776 579999999999 6889999999999999999999999999999999
Q ss_pred eeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCcccccee
Q 007234 162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC 239 (612)
Q Consensus 162 v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~ 239 (612)
|.+++| ++.++++++ |.|++||+++++.+..+.+|...+.++.++ ++++++++ .|+.|++||+.+++..
T Consensus 282 v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~-~dg~i~vwd~~~~~~~---- 352 (445)
T 2ovr_B 282 VYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGN-ADSTVKIWDIKTGQCL---- 352 (445)
T ss_dssp EEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEE-TTSCEEEEETTTCCEE----
T ss_pred eEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe--CCEEEEEe-CCCeEEEEECCCCcEE----
Confidence 999999 788999887 899999999999999999999999988774 66888887 7999999999887643
Q ss_pred eEeecC---CceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceeccc-----CCceeEeecccccCCCCcccc
Q 007234 240 VLAMEH---PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT-----KATKILSSSEDVNSKSQKSAT 311 (612)
Q Consensus 240 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~-----~~~~~~~~~~~~~s~~~~~~~ 311 (612)
..+.. +...+.++.++ +.++++++.||.|++||+.+++.+... ......+.+.. ++|++.
T Consensus 353 -~~~~~~~~~~~~v~~~~~~-------~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~-~s~~~~--- 420 (445)
T 2ovr_B 353 -QTLQGPNKHQSAVTCLQFN-------KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIR-ASNTKL--- 420 (445)
T ss_dssp -EEECSTTSCSSCEEEEEEC-------SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEE-ECSSEE---
T ss_pred -EEEccCCCCCCCEEEEEEC-------CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEE-ecCCEE---
Confidence 33332 44445556553 589999999999999999999877655 12222222222 566666
Q ss_pred hhhhcccccce
Q 007234 312 AAIFAAKLQDI 322 (612)
Q Consensus 312 ~~i~~~~~d~~ 322 (612)
.+++|+.|+.
T Consensus 421 -~la~~~~dg~ 430 (445)
T 2ovr_B 421 -VCAVGSRNGT 430 (445)
T ss_dssp -EEEEECSSSS
T ss_pred -EEEEcccCCC
Confidence 6777777653
No 104
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.96 E-value=2.7e-27 Score=242.78 Aligned_cols=294 Identities=9% Similarity=-0.004 Sum_probs=205.7
Q ss_pred CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (612)
Q Consensus 2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (612)
+..+|+++ +|||||++||+|+.+| ++|||+.+++.......+ ....+.|.+..
T Consensus 18 h~~~V~~v--~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~--------------------~~~~~~~~~~~---- 70 (355)
T 3vu4_A 18 VSNPVTDY--EFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR--------------------HLSKVRMLHRT---- 70 (355)
T ss_dssp -CCCCCEE--EECTTSSEEEEECSSE-EEEEEETTEEEEEEEECS--------------------CCCEEEECTTS----
T ss_pred CCCceEEE--EECCCCCEEEEEcCCE-EEEEecCCcceeeeeecC--------------------CeEEEEEcCCC----
Confidence 45788655 9999999999998775 789999888766543211 12233333321
Q ss_pred cccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCC-ceeEEEecCCC
Q 007234 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG-SLLGKFRASTK 160 (612)
Q Consensus 82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~-~~~~~~~~~~~ 160 (612)
+.++++|+.++.|++||+.+++.+..+. |...|.+++|+++. ++++ .|+.|++||+.++ +.+..+..
T Consensus 71 ----~~~~~~~~~d~~v~iWd~~~~~~~~~~~--~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~--- 138 (355)
T 3vu4_A 71 ----NYVAFVTGVKEVVHIWDDVKKQDVSRIK--VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR--- 138 (355)
T ss_dssp ----SEEEEECSSTTEEEEEETTTTEEEEEEE--CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE---
T ss_pred ----CEEEEEECCccEEEEEECCCCcEEEEEE--CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc---
Confidence 3344667888999999999999987763 67799999998764 4444 4889999999988 77666664
Q ss_pred CeeEEEECCCCCEEEEe--C--CeEEEEEcCCCe----------------eEEEEecCCCCEEEEEEeeCCcEEEEEEcC
Q 007234 161 GISCMAVSSDGKMLATA--A--GQLKTFNCSDHK----------------KMQKFSGHPGAVRFMTFSDNGKYVLSSAVG 220 (612)
Q Consensus 161 ~v~~l~~spdg~~l~~~--~--g~i~lwd~~~~~----------------~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~ 220 (612)
+...+++++ .+++++ + |.|++||+++++ .+..+.+|..+|.+++|+|+|++|++++ .
T Consensus 139 ~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s-~ 215 (355)
T 3vu4_A 139 FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCS-Q 215 (355)
T ss_dssp EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEE-T
T ss_pred CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEe-C
Confidence 445566777 566664 4 899999999865 2678899999999999999999999998 7
Q ss_pred CCe-EEEEEcCCCccccceeeEeec--CCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEe
Q 007234 221 ERY-IALWRTDGVKKQSASCVLAME--HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILS 297 (612)
Q Consensus 221 d~~-i~vwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 297 (612)
|++ |++||+.+++.. ..+. .+...+..+.|+ |+|++|++++.||.|++||+..+...+...-...
T Consensus 216 d~~~v~iwd~~~~~~~-----~~~~~g~h~~~v~~~~~s-----~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~-- 283 (355)
T 3vu4_A 216 DGTIIRVFKTEDGVLV-----REFRRGLDRADVVDMKWS-----TDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGW-- 283 (355)
T ss_dssp TCSEEEEEETTTCCEE-----EEEECTTCCSCEEEEEEC-----TTSCEEEEEETTCEEEEEESSCCSCCCSEETTTT--
T ss_pred CCCEEEEEECCCCcEE-----EEEEcCCCCCcEEEEEEC-----CCCCEEEEEECCCEEEEEEccCCCCcccccccce--
Confidence 998 999999988744 3443 255667778887 9999999999999999999977532211000000
Q ss_pred ecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecce
Q 007234 298 SSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGR 377 (612)
Q Consensus 298 ~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w 377 (612)
+.+. .++. .|. ...+.-...+......++|++||+++ ++++.|+.+++|
T Consensus 284 -----~~~~-----------~~~~---~~~-----------~~~~~~~~~~~~~~~~~a~~~d~~~l-~~~~~dg~~~~~ 332 (355)
T 3vu4_A 284 -----INMK-----------YFQS---EWS-----------LCNFKLSVDKHVRGCKIAWISESSLV-VVWPHTRMIETF 332 (355)
T ss_dssp -----EECC-----------CCCC---SSC-----------SEEEECCCCTTCCCCEEEESSSSEEE-EEETTTTEEEEE
T ss_pred -----eecc-----------cccc---ccc-----------eeEEEeccCCCCCceEEEEeCCCCEE-EEEeCCCeEEEE
Confidence 0000 0000 000 00000000122234668999999999 888889999999
Q ss_pred eee
Q 007234 378 YVQ 380 (612)
Q Consensus 378 ~~~ 380 (612)
++.
T Consensus 333 ~~~ 335 (355)
T 3vu4_A 333 KVV 335 (355)
T ss_dssp EEE
T ss_pred EEE
Confidence 873
No 105
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.96 E-value=8.9e-28 Score=247.34 Aligned_cols=193 Identities=18% Similarity=0.184 Sum_probs=163.3
Q ss_pred EEEEcCCCCEEEEEe--CCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCc
Q 007234 10 LTSFSPALDYFAICS--GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (612)
Q Consensus 10 ~~~fspdg~~las~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (612)
+++|||||+++|+++ .|++|+|||+.+++++..+. |...+.++.|+++ +.
T Consensus 138 ~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspd---------------------------g~ 189 (365)
T 4h5i_A 138 LVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTD---------------------------GK 189 (365)
T ss_dssp EEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTT---------------------------SS
T ss_pred EEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccC---------------------------Cc
Confidence 449999999987654 68999999999999998886 5566776666666 78
Q ss_pred EEEEEECCCcEEEEEcCCCeEE-EEeccCCCCCeEEEEEecCCCEEEEEecCC----cEEEEECCCCce----eEEEecC
Q 007234 88 LLVLGTGGGDVLALAVSAGQLK-WRLSDCHPGGVSAISFATHGSCIYSAGADG----MVCEIDPLTGSL----LGKFRAS 158 (612)
Q Consensus 88 ~l~~gs~~g~I~vwd~~~~~~~-~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg----~v~iwd~~~~~~----~~~~~~~ 158 (612)
++++++. +.+.+|+..++..+ .....+|...|.+++|+|+++.+++++.|+ .++.||+..+.. ...+.+|
T Consensus 190 ~l~s~s~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 268 (365)
T 4h5i_A 190 VVAYITG-SSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNR 268 (365)
T ss_dssp EEEEECS-SCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESS
T ss_pred eEEeccc-eeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCC
Confidence 8888874 55677777776654 344567899999999999999999999887 688899876643 3457788
Q ss_pred CCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEE-ecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCC
Q 007234 159 TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKF-SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (612)
Q Consensus 159 ~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~-~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~ 232 (612)
...|++++|+|||++||+|+ ++|+|||+++++++..+ .+|..+|++++|+|||++|++++ .|++|+||++...
T Consensus 269 ~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S-~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 269 FKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVS-AANTIHIIKLPLN 344 (365)
T ss_dssp CSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEE-TTSEEEEEECCTT
T ss_pred CCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEe-CCCeEEEEEcCCC
Confidence 89999999999999999998 89999999999999886 78999999999999999999998 7999999999754
No 106
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.96 E-value=1.7e-28 Score=259.05 Aligned_cols=247 Identities=15% Similarity=0.171 Sum_probs=184.0
Q ss_pred CCcccceeEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccc
Q 007234 2 GSSNIRDILTSFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (612)
Q Consensus 2 ~s~~V~~l~~~fsp-dg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~ 80 (612)
|.++|+++ +|+| ++++|++|+.||+|+|||++++........+.. .....++.|.+.
T Consensus 163 H~~~V~~l--~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~---- 220 (435)
T 4e54_B 163 AGGSITGL--KFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTI----------------NIWFCSLDVSAS---- 220 (435)
T ss_dssp SSCCCCEE--EECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSC----------------SCCCCCEEEETT----
T ss_pred CCCCEEEE--EEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCC----------------CccEEEEEECCC----
Confidence 46789666 9998 789999999999999999987654433322211 112334455443
Q ss_pred ccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCC-EEEEEecCCcEEEEECCCCceeEE---Ee
Q 007234 81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTGSLLGK---FR 156 (612)
Q Consensus 81 ~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~-~l~s~s~dg~v~iwd~~~~~~~~~---~~ 156 (612)
+.+|++|+.+|.|++||+... .+..+ .+|...|++++|+|+++ +|++|+.|++|++||+++++.... ..
T Consensus 221 -----~~~l~~g~~dg~i~~wd~~~~-~~~~~-~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~ 293 (435)
T 4e54_B 221 -----SRMVVTGDNVGNVILLNMDGK-ELWNL-RMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSL 293 (435)
T ss_dssp -----TTEEEEECSSSBEEEEESSSC-BCCCS-BCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCC
T ss_pred -----CCEEEEEeCCCcEeeeccCcc-eeEEE-ecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEee
Confidence 789999999999999999754 34344 68999999999999876 688999999999999988765443 35
Q ss_pred cCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCC------EEEEEEeeCCcEEEEEEc---------
Q 007234 157 ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGA------VRFMTFSDNGKYVLSSAV--------- 219 (612)
Q Consensus 157 ~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~------v~~l~~sp~~~~l~s~s~--------- 219 (612)
+|...|++++|+|+|++|++++ |.|++||+.+++....+.+|... +....|+|++..+++++.
T Consensus 294 ~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 373 (435)
T 4e54_B 294 PHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCT 373 (435)
T ss_dssp BCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSS
T ss_pred eccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEE
Confidence 6888999999999999999998 89999999999888777666532 234567777766666542
Q ss_pred --CCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcce
Q 007234 220 --GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE 286 (612)
Q Consensus 220 --~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~ 286 (612)
.++.|++||..+++.. ......|...+.....|+ |+|.+|++|+ |+.|+||++++++.
T Consensus 374 ~~~~~~i~iwd~~~g~~~---~~l~~~~~~~v~s~~~fs-----pdg~~lasg~-d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 374 PYELRTIDVFDGNSGKMM---CQLYDPESSGISSLNEFN-----PMGDTLASAM-GYHILIWSQQEART 433 (435)
T ss_dssp TTCCCCEEEECSSSCCEE---EEECCSSCCCCCCEEEEC-----TTSSCEEEEC-SSEEEECCCC----
T ss_pred ecCCCEEEEEECCCCcEE---EEEeCCCCCcEEEEEEEC-----CCCCEEEEEc-CCcEEEEECCcCee
Confidence 3457999999988744 222223445555555687 9999998876 88999999988865
No 107
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.96 E-value=1.3e-26 Score=232.91 Aligned_cols=240 Identities=15% Similarity=0.249 Sum_probs=196.6
Q ss_pred CcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccc
Q 007234 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (612)
Q Consensus 3 s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (612)
...|+ +++|+|+|++||+|+.||+|++||+.+++++..+.+|...+. ++.+ +
T Consensus 67 ~~~V~--~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~------------------~~~~---~----- 118 (318)
T 4ggc_A 67 GEYIS--SVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVG------------------SLSW---N----- 118 (318)
T ss_dssp TCCEE--EEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEE------------------EEEE---E-----
T ss_pred CCeEE--EEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEE------------------Eeec---C-----
Confidence 34575 459999999999999999999999999999999887654332 1111 1
Q ss_pred ccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCce----eEEEecC
Q 007234 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL----LGKFRAS 158 (612)
Q Consensus 83 ~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~----~~~~~~~ 158 (612)
+..+++|+.++.+++|+...+........+|...+..+.++++++++++++.|++|++||+.+++. ......+
T Consensus 119 ---~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 195 (318)
T 4ggc_A 119 ---SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQH 195 (318)
T ss_dssp ---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCC
T ss_pred ---CCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeeccc
Confidence 678999999999999999887665555578999999999999999999999999999999987753 3445667
Q ss_pred CCCeeEEEECCCCCEEE---EeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEE-cCCCeEEEEEcCCC
Q 007234 159 TKGISCMAVSSDGKMLA---TAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSA-VGERYIALWRTDGV 232 (612)
Q Consensus 159 ~~~v~~l~~spdg~~l~---~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s-~~d~~i~vwd~~~~ 232 (612)
...|.++.++|++..++ +++ +.|++||.+........ .+...+..+.|+|++..+++++ ..|+.|++||+.++
T Consensus 196 ~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~ 274 (318)
T 4ggc_A 196 QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV-DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM 274 (318)
T ss_dssp CSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEE-ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC
T ss_pred CCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccc-cceeeeeeeeecccccceEEEEEcCCCEEEEEECCCC
Confidence 78999999999765443 333 79999999988876655 4778899999999999887754 36899999999988
Q ss_pred ccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCc
Q 007234 233 KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (612)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~ 284 (612)
+. +..+..+...+..++|+ |+|++|++++.||+|++||+...
T Consensus 275 ~~-----~~~l~gH~~~V~~l~~s-----pdg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 275 AK-----VAELKGHTSRVLSLTMS-----PDGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp CE-----EEEECCCSSCEEEEEEC-----TTSSCEEEEETTTEEEEECCSCC
T ss_pred cE-----EEEEcCCCCCEEEEEEc-----CCCCEEEEEecCCeEEEEECCCC
Confidence 64 35566666677888887 99999999999999999998654
No 108
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.96 E-value=2.9e-27 Score=249.31 Aligned_cols=254 Identities=13% Similarity=0.148 Sum_probs=197.2
Q ss_pred ceeEEEeeecccccccccCCcEEEEEECCCcEEEEEcCC----------CeEEEEeccCCCCCeEEEEEecCCC-EEEEE
Q 007234 67 DYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSA----------GQLKWRLSDCHPGGVSAISFATHGS-CIYSA 135 (612)
Q Consensus 67 ~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~----------~~~~~~~~~~h~~~V~~l~~sp~~~-~l~s~ 135 (612)
.+.++.|.+.+ +.++++|+.+|.|++|++.. ......+ .+|...|++++|+|++. +|++|
T Consensus 130 ~v~~l~~~p~~--------~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~l~s~ 200 (430)
T 2xyi_A 130 EVNRARYMPQN--------ACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRL-RGHQKEGYGLSWNPNLNGYLLSA 200 (430)
T ss_dssp CCSEEEEETTE--------EEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEE-ECCSSCCCCEEECTTSTTEEEEE
T ss_pred cEEEEEECCCC--------CcEEEEECCCCcEEEEECCCcccccCccccCCCcEEe-cCCCCCeEEEEeCCCCCCeEEEE
Confidence 45667776643 56899999999999999986 4455444 57999999999999988 99999
Q ss_pred ecCCcEEEEECCCCce-------eEEEecCCCCeeEEEECC-CCCEEEEeC--CeEEEEEcCCC---eeEEEEecCCCCE
Q 007234 136 GADGMVCEIDPLTGSL-------LGKFRASTKGISCMAVSS-DGKMLATAA--GQLKTFNCSDH---KKMQKFSGHPGAV 202 (612)
Q Consensus 136 s~dg~v~iwd~~~~~~-------~~~~~~~~~~v~~l~~sp-dg~~l~~~~--g~i~lwd~~~~---~~~~~~~~h~~~v 202 (612)
+.||.|++||+..+.. ...+..|...|.+++|+| ++.++++++ |.|++||++++ +.+..+..|...|
T Consensus 201 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v 280 (430)
T 2xyi_A 201 SDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEV 280 (430)
T ss_dssp CTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCE
T ss_pred eCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCe
Confidence 9999999999987422 456778889999999999 678888876 89999999987 5777888999999
Q ss_pred EEEEEeeCCc-EEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCC-cEEEEEecCCcEEEEE
Q 007234 203 RFMTFSDNGK-YVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAG-LYVLAISETGVCYIWY 280 (612)
Q Consensus 203 ~~l~~sp~~~-~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~t~s~dg~i~iwd 280 (612)
++++|+|++. ++++++ .|+.|++||++..... +..+..+...+..+.|+ |++ .+|++++.||.|++||
T Consensus 281 ~~i~~~p~~~~~l~tg~-~dg~v~vwd~~~~~~~----~~~~~~h~~~v~~i~~s-----p~~~~~l~s~~~d~~i~iwd 350 (430)
T 2xyi_A 281 NCLSFNPYSEFILATGS-ADKTVALWDLRNLKLK----LHSFESHKDEIFQVQWS-----PHNETILASSGTDRRLHVWD 350 (430)
T ss_dssp EEEEECSSCTTEEEEEE-TTSEEEEEETTCTTSC----SEEEECCSSCEEEEEEC-----SSCTTEEEEEETTSCCEEEE
T ss_pred EEEEeCCCCCCEEEEEe-CCCeEEEEeCCCCCCC----eEEeecCCCCEEEEEEC-----CCCCCEEEEEeCCCcEEEEe
Confidence 9999999998 566766 7999999999885422 33444455566777887 877 5799999999999999
Q ss_pred CCCcceecccCCceeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCC
Q 007234 281 GQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQD 360 (612)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~d 360 (612)
+......... . . ..++ .........+|...|.+++|+|+
T Consensus 351 ~~~~~~~~~~---------------~------~----~~~~----------------~~~~~~~~~~h~~~v~~~~~~p~ 389 (430)
T 2xyi_A 351 LSKIGEEQST---------------E------D----AEDG----------------PPELLFIHGGHTAKISDFSWNPN 389 (430)
T ss_dssp GGGTTCCCCH---------------H------H----HHHC----------------CTTEEEECCCCSSCEEEEEECSS
T ss_pred CCCCccccCc---------------c------c----cccC----------------CcceEEEcCCCCCCceEEEECCC
Confidence 8663221100 0 0 0000 01122245678888999999999
Q ss_pred Cc-eEeccccceeeecceeeec
Q 007234 361 GV-LLPMSQSLLKSKRGRYVQN 381 (612)
Q Consensus 361 g~-~l~~s~s~d~~~~~w~~~~ 381 (612)
+. ++ ++++.|+.+++|++.+
T Consensus 390 ~~~~l-~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 390 EPWII-CSVSEDNIMQVWQMAE 410 (430)
T ss_dssp STTEE-EEEETTSEEEEEEECH
T ss_pred CCCEE-EEEECCCCEEEeEccc
Confidence 99 55 9999999999999854
No 109
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=1.3e-26 Score=244.18 Aligned_cols=279 Identities=15% Similarity=0.091 Sum_probs=213.1
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEE
Q 007234 10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (612)
Q Consensus 10 ~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (612)
+++|+|++.++++++.|+.|++||+.+++....+.... ..+| .....++.|.+. +.++
T Consensus 127 ~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~------------~~~~-~~~v~~~~~~~~---------~~~~ 184 (433)
T 3bws_A 127 SVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEK------------YKKK-LGFVETISIPEH---------NELW 184 (433)
T ss_dssp CCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHH------------HHTT-CCEEEEEEEGGG---------TEEE
T ss_pred EEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCccc------------cccc-CCceeEEEEcCC---------CEEE
Confidence 45999988888888889999999999999886432100 0011 123445555322 7789
Q ss_pred EEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEE-ecCCcEEEEECCCCceeEEEecCCCCeeEEEEC
Q 007234 90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSA-GADGMVCEIDPLTGSLLGKFRASTKGISCMAVS 168 (612)
Q Consensus 90 ~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~-s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~s 168 (612)
++++.+|.|++||+.+++.+..+ ..|...+.+++|+|+++.++++ +.|+.|++||+.+++.+..+.. ...+.+++|+
T Consensus 185 ~s~~~d~~v~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~ 262 (433)
T 3bws_A 185 VSQMQANAVHVFDLKTLAYKATV-DLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDK-IGLPRGLLLS 262 (433)
T ss_dssp EEEGGGTEEEEEETTTCCEEEEE-ECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCC-CSEEEEEEEC
T ss_pred EEECCCCEEEEEECCCceEEEEE-cCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecC-CCCceEEEEc
Confidence 99999999999999999988776 4688999999999999988554 4799999999999998888775 3468999999
Q ss_pred CCCCEEEEeC----------CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccce
Q 007234 169 SDGKMLATAA----------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS 238 (612)
Q Consensus 169 pdg~~l~~~~----------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~ 238 (612)
|+|+++++++ |.|++||+.+++.+..+ .|...+.+++|+|+++.++.++..|+.|++||+.+++..
T Consensus 263 ~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~--- 338 (433)
T 3bws_A 263 KDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQ--- 338 (433)
T ss_dssp TTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEE---
T ss_pred CCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEE---
Confidence 9999888765 38999999999887766 466688999999999877666558999999999977633
Q ss_pred eeEeecCCceeEEeEEecCCccCCCCcEEEEEec---------------CCcEEEEECCCcceecccCCceeEeeccccc
Q 007234 239 CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE---------------TGVCYIWYGQNIEELRNTKATKILSSSEDVN 303 (612)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~---------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 303 (612)
..+.+.. .+..++++ |+|+++++++. ||.|++||..+++.+.
T Consensus 339 --~~~~~~~-~~~~~~~s-----~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~--------------- 395 (433)
T 3bws_A 339 --KSIPVFD-KPNTIALS-----PDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKE--------------- 395 (433)
T ss_dssp --EEEECSS-SEEEEEEC-----TTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEE---------------
T ss_pred --EEecCCC-CCCeEEEc-----CCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEE---------------
Confidence 3333333 34567777 99999888876 4688888876655432
Q ss_pred CCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceeee
Q 007234 304 SKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (612)
Q Consensus 304 s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~~ 380 (612)
.+.. ...+.+++|+|||++|+++++.|+++++|++.
T Consensus 396 ----------------------------------------~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 396 ----------------------------------------FWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp ----------------------------------------EEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred ----------------------------------------EecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 1111 22578899999999994455569999999873
No 110
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.96 E-value=2.2e-27 Score=247.02 Aligned_cols=231 Identities=12% Similarity=0.023 Sum_probs=170.9
Q ss_pred CcEEEEEECCCcEEEEEcCCCeEEE----EeccCCCCCeEEEEEec--------CCCEEEEEecCCcEEEEECCCCceeE
Q 007234 86 SSLLVLGTGGGDVLALAVSAGQLKW----RLSDCHPGGVSAISFAT--------HGSCIYSAGADGMVCEIDPLTGSLLG 153 (612)
Q Consensus 86 ~~~l~~gs~~g~I~vwd~~~~~~~~----~~~~~h~~~V~~l~~sp--------~~~~l~s~s~dg~v~iwd~~~~~~~~ 153 (612)
+.++++|+.|++|++||..+++... ..+.+|.+.|++++|+| |+++|++||.|++|++||+.++.++.
T Consensus 101 ~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~ 180 (393)
T 4gq1_A 101 SLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPIL 180 (393)
T ss_dssp EEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEE
T ss_pred CCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceee
Confidence 6689999999999999999987643 23478999999999998 78899999999999999999998888
Q ss_pred EEecCCCCeeEEEECCCCC-EEEEeC--CeEEEEEcCCCeeEEE-------------------------EecCCCCEEEE
Q 007234 154 KFRASTKGISCMAVSSDGK-MLATAA--GQLKTFNCSDHKKMQK-------------------------FSGHPGAVRFM 205 (612)
Q Consensus 154 ~~~~~~~~v~~l~~spdg~-~l~~~~--g~i~lwd~~~~~~~~~-------------------------~~~h~~~v~~l 205 (612)
.+..|...+.+++|+|++. +|++++ |+|++||+++++.... ..+|...+.++
T Consensus 181 ~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v 260 (393)
T 4gq1_A 181 AGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANV 260 (393)
T ss_dssp EEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEE
T ss_pred eecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceee
Confidence 8888999999999999875 688877 8999999988754332 23677888899
Q ss_pred EEe-eCCcEEEEEEcCCCeEEEEEcCCCccccce--------------eeEeecCCceeEEeEEecCCccCCCCcEEEEE
Q 007234 206 TFS-DNGKYVLSSAVGERYIALWRTDGVKKQSAS--------------CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAI 270 (612)
Q Consensus 206 ~~s-p~~~~l~s~s~~d~~i~vwd~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~ 270 (612)
.|+ |+++.+++++ .|+++++||+..+...... ...........+...++. ..++.++++|
T Consensus 261 ~~~~~dg~~l~s~s-~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~sg 335 (393)
T 4gq1_A 261 RWIGSDGSGILAMC-KSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHP----RYMDYFATAH 335 (393)
T ss_dssp EEETTTTCEEEEEC-TTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECS----SCTTEEEEEE
T ss_pred eeecCCCCEEEEEe-CCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEcc----CCCCEEEEEE
Confidence 987 7999999987 7999999999876532100 001111112222233332 1355677788
Q ss_pred ecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCC
Q 007234 271 SETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSG 350 (612)
Q Consensus 271 s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~ 350 (612)
+.||.|++||..+++.+. ....|..
T Consensus 336 s~Dg~V~lwd~~~~~~~~-------------------------------------------------------~~~~~~~ 360 (393)
T 4gq1_A 336 SQHGLIQLINTYEKDSNS-------------------------------------------------------IPIQLGM 360 (393)
T ss_dssp TTTTEEEEEETTCTTCCE-------------------------------------------------------EEEECSS
T ss_pred CCCCEEEEEECCCCcEEE-------------------------------------------------------EecCCCC
Confidence 899999999987664421 2334666
Q ss_pred CeEEEEecCCCceEeccccceeeeccee
Q 007234 351 EDINLNCSQDGVLLPMSQSLLKSKRGRY 378 (612)
Q Consensus 351 ~v~~l~~S~dg~~l~~s~s~d~~~~~w~ 378 (612)
.|.+++|||||++| +++++++. .+|.
T Consensus 361 ~V~svafspdG~~L-A~as~~Gv-~lvr 386 (393)
T 4gq1_A 361 PIVDFCWHQDGSHL-AIATEGSV-LLTR 386 (393)
T ss_dssp CEEEEEECTTSSEE-EEEESSEE-EEEE
T ss_pred cEEEEEEcCCCCEE-EEEeCCCe-EEEE
Confidence 89999999999999 99987765 4443
No 111
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.96 E-value=6.8e-27 Score=246.79 Aligned_cols=239 Identities=14% Similarity=0.251 Sum_probs=191.5
Q ss_pred CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (612)
Q Consensus 2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (612)
+.++|.++ +| ++++|++|+.||+|++||+.+++.+..+.+|...+.++.|+
T Consensus 172 h~~~v~~l--~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~------------------------- 222 (435)
T 1p22_A 172 HTGSVLCL--QY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN------------------------- 222 (435)
T ss_dssp CSSCEEEE--EC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECC-------------------------
T ss_pred CCCcEEEE--EE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEc-------------------------
Confidence 35667444 66 88999999999999999999999999988776655443332
Q ss_pred cccCCcEEEEEECCCcEEEEEcCCCeEEE--EeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCC
Q 007234 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKW--RLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST 159 (612)
Q Consensus 82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~--~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~ 159 (612)
+..+++|+.||.|++||+.++.... ....+|...|.+++| +++++++|+.||.|++||+.+++.+..+.+|.
T Consensus 223 ----~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 296 (435)
T 1p22_A 223 ----NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHK 296 (435)
T ss_dssp ----TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCS
T ss_pred ----CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCC
Confidence 4579999999999999999876542 444689999999999 67899999999999999999999999999999
Q ss_pred CCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCcccc-
Q 007234 160 KGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS- 236 (612)
Q Consensus 160 ~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~- 236 (612)
..|.++.++ ++++++|+ |.|++||+++++++..+.+|...|.+++| ++.++++++ .||.|++||+.++....
T Consensus 297 ~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~-~dg~i~vwd~~~~~~~~~ 371 (435)
T 1p22_A 297 RGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGA-YDGKIKVWDLVAALDPRA 371 (435)
T ss_dssp SCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEE-TTSCEEEEEHHHHTSTTS
T ss_pred CcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEe-CCCcEEEEECCCCCCccc
Confidence 999999994 67888887 89999999999999999999999999998 788999987 79999999997654210
Q ss_pred ---ceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCccee
Q 007234 237 ---ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL 287 (612)
Q Consensus 237 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~ 287 (612)
..+...+..+...+..+.+ ++.+|++++.||.|++||+.+....
T Consensus 372 ~~~~~~~~~~~~h~~~v~~l~~-------~~~~l~s~s~Dg~i~iwd~~~~~~~ 418 (435)
T 1p22_A 372 PAGTLCLRTLVEHSGRVFRLQF-------DEFQIVSSSHDDTILIWDFLNDPAA 418 (435)
T ss_dssp CTTTTEEEEECCCSSCCCCEEE-------CSSCEEECCSSSEEEEEC-------
T ss_pred cccchheeeccCCCCCeEEEEe-------CCCEEEEEeCCCEEEEEECCCCCCc
Confidence 1134444445545555555 4678999999999999999876554
No 112
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.95 E-value=1.6e-25 Score=232.38 Aligned_cols=265 Identities=13% Similarity=0.105 Sum_probs=207.8
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEE-EEEECCC
Q 007234 18 DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL-VLGTGGG 96 (612)
Q Consensus 18 ~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l-~~gs~~g 96 (612)
.++++++.|+.|++||+.+++++..+..+.. + .++.|.+. +..+ ++++.++
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~-~------------------~~~~~s~d---------g~~l~~~~~~d~ 54 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGSN-P------------------MGAVISPD---------GTKVYVANAHSN 54 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSSS-E------------------EEEEECTT---------SSEEEEEEGGGT
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCCC-c------------------ceEEECCC---------CCEEEEECCCCC
Confidence 4677888999999999999999988865432 3 34444443 5555 6677899
Q ss_pred cEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEE-ecCCcEEEEECCCCceeEEEecCCCCeeEEEECCCCCEE-
Q 007234 97 DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSA-GADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKML- 174 (612)
Q Consensus 97 ~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~-s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l- 174 (612)
.|++||+.+++.+..+.. ...+.+++|+|+++.++.+ +.|+.|++||+.+++.+..+..+ ..+.+++|+|+|+.+
T Consensus 55 ~i~v~d~~~~~~~~~~~~--~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~ 131 (391)
T 1l0q_A 55 DVSIIDTATNNVIATVPA--GSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLY 131 (391)
T ss_dssp EEEEEETTTTEEEEEEEC--SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEE
T ss_pred eEEEEECCCCeEEEEEEC--CCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEE
Confidence 999999999999877643 3489999999999987554 46799999999999998888754 568999999999987
Q ss_pred EEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEe
Q 007234 175 ATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDC 252 (612)
Q Consensus 175 ~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 252 (612)
++++ +.|++||+.+++.+..+..|. .+.+++|+|++++++.++..++.|++||+.+++.. ....+.. .+..
T Consensus 132 ~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~-----~~~~~~~-~~~~ 204 (391)
T 1l0q_A 132 VTNNGDKTVSVINTVTKAVINTVSVGR-SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVI-----DTVKVEA-APSG 204 (391)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE-----EEEECSS-EEEE
T ss_pred EEeCCCCEEEEEECCCCcEEEEEecCC-CcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEE-----EEEecCC-Cccc
Confidence 5655 899999999999998887664 56999999999988655557899999999887633 3333433 4456
Q ss_pred EEecCCccCCCCcEEEEEe---cCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhcccccceecCCCce
Q 007234 253 RCIDNGGVDDAGLYVLAIS---ETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVH 329 (612)
Q Consensus 253 ~~~~~~~~~~~~~~l~t~s---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~ 329 (612)
+.++ |+++++++++ .++.|++||+.+++.+.
T Consensus 205 ~~~~-----~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~----------------------------------------- 238 (391)
T 1l0q_A 205 IAVN-----PEGTKAYVTNVDKYFNTVSMIDTGTNKITA----------------------------------------- 238 (391)
T ss_dssp EEEC-----TTSSEEEEEEECSSCCEEEEEETTTTEEEE-----------------------------------------
T ss_pred eEEC-----CCCCEEEEEecCcCCCcEEEEECCCCeEEE-----------------------------------------
Confidence 6776 9999999888 68999999987765422
Q ss_pred EEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceeeec
Q 007234 330 TFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN 381 (612)
Q Consensus 330 ~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~~~ 381 (612)
.+..|. .+.+++|+|||+++.++++.|+.+++|+...
T Consensus 239 --------------~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~ 275 (391)
T 1l0q_A 239 --------------RIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTAT 275 (391)
T ss_dssp --------------EEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred --------------EEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCC
Confidence 111222 4678899999998867888999999999754
No 113
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=4.7e-27 Score=265.09 Aligned_cols=254 Identities=13% Similarity=0.145 Sum_probs=203.6
Q ss_pred EEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEECCCcEEEEEcCC--CeEEEEeccCCCC
Q 007234 41 TEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSA--GQLKWRLSDCHPG 118 (612)
Q Consensus 41 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~--~~~~~~~~~~h~~ 118 (612)
..+.+|.+.+.++.|+++ +.++++|+.||.|++||+.. +.....+ .+|.+
T Consensus 3 ~~l~gH~~~V~~l~~s~d---------------------------g~~latg~~dg~I~vwd~~~~~~~~~~~l-~~h~~ 54 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYY---------------------------GKRLATCSSDKTIKIFEVEGETHKLIDTL-TGHEG 54 (753)
T ss_dssp -----CCCCEEEECCCSS---------------------------SCCEEEEETTTEEEEEEEETTEEEEEEEE-CCCSS
T ss_pred eecccCcceeEEEEECCC---------------------------CCeEEEEECCCcEEEEecCCCCCccceec-cCCcC
Confidence 345667777776666666 78899999999999999984 4455444 68999
Q ss_pred CeEEEEEecC--CCEEEEEecCCcEEEEECCCCc--eeEEEecCCCCeeEEEECCC--CCEEEEeC--CeEEEEEcCCC-
Q 007234 119 GVSAISFATH--GSCIYSAGADGMVCEIDPLTGS--LLGKFRASTKGISCMAVSSD--GKMLATAA--GQLKTFNCSDH- 189 (612)
Q Consensus 119 ~V~~l~~sp~--~~~l~s~s~dg~v~iwd~~~~~--~~~~~~~~~~~v~~l~~spd--g~~l~~~~--g~i~lwd~~~~- 189 (612)
.|++++|+|+ +++|++|+.||.|++||+.+++ .+..+..|...|.+++|+|+ ++++++|+ |.|++||++++
T Consensus 55 ~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~ 134 (753)
T 3jro_A 55 PVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENG 134 (753)
T ss_dssp CEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSS
T ss_pred ceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCC
Confidence 9999999988 9999999999999999999887 67778889999999999999 99999988 89999999887
Q ss_pred -eeEEEEecCCCCEEEEEEee-------------CCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEe
Q 007234 190 -KKMQKFSGHPGAVRFMTFSD-------------NGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCI 255 (612)
Q Consensus 190 -~~~~~~~~h~~~v~~l~~sp-------------~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (612)
.....+.+|...|.++.|+| ++.++++++ .||.|++||++++... ......+..+...+..+.|
T Consensus 135 ~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs-~dg~I~iwd~~~~~~~-~~~~~~~~~h~~~V~~l~~ 212 (753)
T 3jro_A 135 TTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGG-ADNLVKIWKYNSDAQT-YVLESTLEGHSDWVRDVAW 212 (753)
T ss_dssp CCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEE-TTSCEEEEEEETTTTE-EEEEEEECCCSSCEEEEEE
T ss_pred CcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEE-CCCeEEEEeccCCccc-ceeeeeecCCCCcEEEEEe
Confidence 34556789999999999999 588899987 7999999999887533 1234455566667778888
Q ss_pred cCCccCCC---CcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhcccccceecCCCceEEE
Q 007234 256 DNGGVDDA---GLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFV 332 (612)
Q Consensus 256 ~~~~~~~~---~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 332 (612)
+ |+ +.++++++.||.|++||+.+++..... .
T Consensus 213 s-----p~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~-----------------~------------------------ 246 (753)
T 3jro_A 213 S-----PTVLLRSYLASVSQDRTCIIWTQDNEQGPWKK-----------------T------------------------ 246 (753)
T ss_dssp C-----CCCSSSEEEEEEESSSCEEEEEESSSSSCCBC-----------------C------------------------
T ss_pred c-----cCCCCCCEEEEEecCCEEEEecCCCCCCccee-----------------E------------------------
Confidence 7 88 899999999999999998765421000 0
Q ss_pred EeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceeee
Q 007234 333 AYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (612)
Q Consensus 333 ~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~~ 380 (612)
. .....|...|.+++|+|||.++ ++++.|+.+++|++.
T Consensus 247 -----~----~~~~~~~~~v~~l~~spdg~~l-~s~s~Dg~I~vwd~~ 284 (753)
T 3jro_A 247 -----L----LKEEKFPDVLWRASWSLSGNVL-ALSGGDNKVTLWKEN 284 (753)
T ss_dssp -----B----SSSSCCSSCCCCEEECTTTCCE-EEECSSSCEECCBCC
T ss_pred -----E----eccCCCCCceEEEEEcCCCCEE-EEEcCCCEEEEEecC
Confidence 0 0112355678999999999999 999999999999975
No 114
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.95 E-value=3.7e-26 Score=237.90 Aligned_cols=252 Identities=18% Similarity=0.205 Sum_probs=191.3
Q ss_pred CCcccceeEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccc
Q 007234 2 GSSNIRDILTSFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (612)
Q Consensus 2 ~s~~V~~l~~~fsp-dg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~ 80 (612)
+..+|.++ +|+| ++++|++++.||.|++||+.+++....+. +.. ...++.|.+..+.
T Consensus 98 ~~~~v~~~--~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~------------------~~~~~~~~~~~~~- 155 (408)
T 4a11_B 98 HRYSVETV--QWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEE------------------TVYSHHMSPVSTK- 155 (408)
T ss_dssp CSSCEEEE--EECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSS------------------CEEEEEECSSCSS-
T ss_pred CCCcEEEE--EEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCC------------------ceeeeEeecCCCC-
Confidence 45678555 9999 78899999999999999999999887775 222 3445556555433
Q ss_pred ccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCC-EEEEEecCCcEEEEECCCCc-eeEEE---
Q 007234 81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTGS-LLGKF--- 155 (612)
Q Consensus 81 ~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~-~l~s~s~dg~v~iwd~~~~~-~~~~~--- 155 (612)
+.++++|+.+|.|++||+.+++.+..+ .+|...|++++|+|+++ .|++|+.||.|++||++++. .+..+
T Consensus 156 -----~~~~~~~~~~~~v~~~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~ 229 (408)
T 4a11_B 156 -----HCLVAVGTRGPKVQLCDLKSGSCSHIL-QGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQH 229 (408)
T ss_dssp -----CCEEEEEESSSSEEEEESSSSCCCEEE-CCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTT
T ss_pred -----CcEEEEEcCCCeEEEEeCCCcceeeee-cCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccccccccc
Confidence 679999999999999999999888666 57999999999999998 48899999999999998775 44444
Q ss_pred ------------ecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCC-----CCEEEEEEeeCCcEEEE
Q 007234 156 ------------RASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHP-----GAVRFMTFSDNGKYVLS 216 (612)
Q Consensus 156 ------------~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~-----~~v~~l~~sp~~~~l~s 216 (612)
..|...|.+++|+|+++++++++ |.|++||+.+++....+.++. ..+........+..+++
T Consensus 230 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (408)
T 4a11_B 230 NGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVF 309 (408)
T ss_dssp TTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEE
T ss_pred ccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEE
Confidence 45778999999999999999987 899999999987655443322 11111222233444555
Q ss_pred EEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCC
Q 007234 217 SAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKA 292 (612)
Q Consensus 217 ~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~ 292 (612)
++ .|+.|++||+.+++.. ..+..+...+..+.|+ |++.+|++++.||.|++||+.+++.+.....
T Consensus 310 ~~-~~~~i~v~d~~~~~~~-----~~~~~~~~~v~~~~~s-----~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~ 374 (408)
T 4a11_B 310 VP-YGSTIAVYTVYSGEQI-----TMLKGHYKTVDCCVFQ-----SNFQELYSGSRDCNILAWVPSLYEPVPDDDE 374 (408)
T ss_dssp EE-ETTEEEEEETTTCCEE-----EEECCCSSCEEEEEEE-----TTTTEEEEEETTSCEEEEEECC---------
T ss_pred Ee-cCCEEEEEECcCCcce-----eeeccCCCeEEEEEEc-----CCCCEEEEECCCCeEEEEeCCCCCccCCCCc
Confidence 55 5899999999988643 4555566667778887 9999999999999999999999987765443
No 115
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.95 E-value=1.2e-26 Score=245.19 Aligned_cols=257 Identities=12% Similarity=0.131 Sum_probs=185.6
Q ss_pred cccceeEEEEcCCC--CEEEEEeCCCcEEEEECCCCcEEEEee---ccCC------ccccccccc--------------c
Q 007234 4 SNIRDILTSFSPAL--DYFAICSGDARIKIWDTLKGQVQTEFA---DIAS------TETTSLYGN--------------R 58 (612)
Q Consensus 4 ~~V~~l~~~fspdg--~~las~s~dg~i~iwd~~~~~~~~~~~---~~~~------~~~~~~~s~--------------~ 58 (612)
++|.++ +|+|++ .+|++++.||+|++||+.++....... .+.+ .+....+.. .
T Consensus 94 ~~V~~l--~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (447)
T 3dw8_B 94 EKINKI--RWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRI 171 (447)
T ss_dssp CCCCEE--EECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEE
T ss_pred CceEEE--EEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEE
Confidence 678666 999998 799999999999999998765432100 0000 000000000 0
Q ss_pred ccccccccceeEEEeeecccccccccCCcEEEEEECCCcEEEEEcCCC-eEEEEe------ccCCCCCeEEEEEecCC-C
Q 007234 59 LEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAG-QLKWRL------SDCHPGGVSAISFATHG-S 130 (612)
Q Consensus 59 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~-~~~~~~------~~~h~~~V~~l~~sp~~-~ 130 (612)
+..+| ...+.++.|.+. +.++++| .||.|++||+.++ .....+ ..+|...|++++|+|++ +
T Consensus 172 ~~~~h-~~~v~~~~~~~~---------~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 240 (447)
T 3dw8_B 172 FANAH-TYHINSISINSD---------YETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCN 240 (447)
T ss_dssp ECSCC-SSCCCEEEECTT---------SSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTT
T ss_pred eccCC-CcceEEEEEcCC---------CCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCc
Confidence 00112 234556666653 7789998 8999999999954 444322 46799999999999998 9
Q ss_pred EEEEEecCCcEEEEECCCCce----eEEEecCCC------------CeeEEEECCCCCEEEEeC-CeEEEEEcCC-CeeE
Q 007234 131 CIYSAGADGMVCEIDPLTGSL----LGKFRASTK------------GISCMAVSSDGKMLATAA-GQLKTFNCSD-HKKM 192 (612)
Q Consensus 131 ~l~s~s~dg~v~iwd~~~~~~----~~~~~~~~~------------~v~~l~~spdg~~l~~~~-g~i~lwd~~~-~~~~ 192 (612)
+|++|+.||.|++||+++++. +..+..|.. .|.+++|+|+|++|++++ +.|++||+++ ++++
T Consensus 241 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~~~~ 320 (447)
T 3dw8_B 241 TFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPV 320 (447)
T ss_dssp EEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCSSCS
T ss_pred EEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCcccc
Confidence 999999999999999999887 788888776 899999999999999988 9999999997 8888
Q ss_pred EEEecCCCC---------------EEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceee-----------------
Q 007234 193 QKFSGHPGA---------------VRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV----------------- 240 (612)
Q Consensus 193 ~~~~~h~~~---------------v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~----------------- 240 (612)
..+.+|... +..++|+|++++|++++ .|+.|++||+.+++.......
T Consensus 321 ~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (447)
T 3dw8_B 321 ETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGS-YNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCA 399 (447)
T ss_dssp CCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEEC-STTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEEC
T ss_pred ceeeccccccccccccccccccccceEEEECCCCCEEEEec-cCCEEEEEEcCCCcceeeeecccccccccccCCccccc
Confidence 889888642 23489999999999887 799999999998764310000
Q ss_pred -----------EeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEEC
Q 007234 241 -----------LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (612)
Q Consensus 241 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~ 281 (612)
..... ...+..++|+ |++.+|++++.++ +++|..
T Consensus 400 ~~~~~~~~~~~~~~~~-~~~i~~~~~~-----p~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 400 SGKRKKDEISVDSLDF-NKKILHTAWH-----PKENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp SSCCCTTCEEGGGCCT-TSCCCEEEEC-----SSSSEEEEECSSC-EEEEEC
T ss_pred cCCccccccccccccc-CCceeEEEEC-----CCCCEEEEEecce-eeeecc
Confidence 00011 1223446676 9999999988875 777764
No 116
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.95 E-value=4.5e-26 Score=231.68 Aligned_cols=248 Identities=10% Similarity=0.010 Sum_probs=190.6
Q ss_pred ceeEEEeeecccccccccCCcEEEEEECCCcEEEEEcCCCe---EEEEeccCCCCCeEEEEEecCCC-EEEEEecCCcEE
Q 007234 67 DYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQ---LKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVC 142 (612)
Q Consensus 67 ~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~---~~~~~~~~h~~~V~~l~~sp~~~-~l~s~s~dg~v~ 142 (612)
.+.++.|.+. +.++++|+.+|.|++|++.++. ....+ .+|...|++++|+|+++ +|++|+.||.|+
T Consensus 13 ~v~~~~~s~~---------~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 82 (342)
T 1yfq_A 13 YISDIKIIPS---------KSLLLITSWDGSLTVYKFDIQAKNVDLLQS-LRYKHPLLCCNFIDNTDLQIYVGTVQGEIL 82 (342)
T ss_dssp CEEEEEEEGG---------GTEEEEEETTSEEEEEEEETTTTEEEEEEE-EECSSCEEEEEEEESSSEEEEEEETTSCEE
T ss_pred cEEEEEEcCC---------CCEEEEEcCCCeEEEEEeCCCCccccceee-eecCCceEEEEECCCCCcEEEEEcCCCeEE
Confidence 3455556553 7889999999999999999877 22233 47999999999999999 999999999999
Q ss_pred EEEC-CCCceeEEEec--CCCCeeEEEECCCCCEEEEeC--CeEEEEEcCC---------CeeEEEEecCCCCEEEEEEe
Q 007234 143 EIDP-LTGSLLGKFRA--STKGISCMAVSSDGKMLATAA--GQLKTFNCSD---------HKKMQKFSGHPGAVRFMTFS 208 (612)
Q Consensus 143 iwd~-~~~~~~~~~~~--~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~---------~~~~~~~~~h~~~v~~l~~s 208 (612)
+||+ .+++. ..+.. |...|.+++|+| ++++++++ +.|++||+++ ++++..+. |...|.+++|+
T Consensus 83 ~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~ 159 (342)
T 1yfq_A 83 KVDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTN 159 (342)
T ss_dssp EECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEEC
T ss_pred EEEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEec
Confidence 9999 77755 77788 899999999999 99999887 8999999987 77666666 89999999999
Q ss_pred eCCcEEEEEEcCCCeEEEEEcCC-CccccceeeEeecCCceeEEeEEecCCccCC-CCcEEEEEecCCcEEEEECCCc--
Q 007234 209 DNGKYVLSSAVGERYIALWRTDG-VKKQSASCVLAMEHPAVFMDCRCIDNGGVDD-AGLYVLAISETGVCYIWYGQNI-- 284 (612)
Q Consensus 209 p~~~~l~s~s~~d~~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~t~s~dg~i~iwd~~~~-- 284 (612)
|++ +++++ .|+.|++||+.+ +... .......+...+..+.++ | ++.++++++.||.|++|+++..
T Consensus 160 ~~~--l~~~~-~d~~i~i~d~~~~~~~~---~~~~~~~~~~~i~~i~~~-----~~~~~~l~~~~~dg~i~i~~~~~~~~ 228 (342)
T 1yfq_A 160 SSR--LIVGM-NNSQVQWFRLPLCEDDN---GTIEESGLKYQIRDVALL-----PKEQEGYACSSIDGRVAVEFFDDQGD 228 (342)
T ss_dssp SSE--EEEEE-STTEEEEEESSCCTTCC---CEEEECSCSSCEEEEEEC-----SGGGCEEEEEETTSEEEEEECCTTCC
T ss_pred CCc--EEEEe-CCCeEEEEECCcccccc---ceeeecCCCCceeEEEEC-----CCCCCEEEEEecCCcEEEEEEcCCCc
Confidence 987 77776 799999999988 5432 112222344456777787 8 9999999999999999998765
Q ss_pred ceecccCCceeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceE
Q 007234 285 EELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLL 364 (612)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l 364 (612)
.... . ....... ... .. .-..|...|.+++|+|+|++|
T Consensus 229 ~~~~--~-~~~~~~~------~~~-----------------------------~~----~~~~~~~~i~~~~~s~~~~~l 266 (342)
T 1yfq_A 229 DYNS--S-KRFAFRC------HRL-----------------------------NL----KDTNLAYPVNSIEFSPRHKFL 266 (342)
T ss_dssp STTC--T-TCEEEEC------CCC-----------------------------CT----TCCSSCCCEEEEEECTTTCCE
T ss_pred cccc--c-cceeeec------ccc-----------------------------cc----cccccceeEEEEEEcCCCCEE
Confidence 1000 0 0000000 000 00 001355689999999999999
Q ss_pred eccccceeeecceeeec
Q 007234 365 PMSQSLLKSKRGRYVQN 381 (612)
Q Consensus 365 ~~s~s~d~~~~~w~~~~ 381 (612)
++++.|+.+++|++.+
T Consensus 267 -~~~~~dg~i~vwd~~~ 282 (342)
T 1yfq_A 267 -YTAGSDGIISCWNLQT 282 (342)
T ss_dssp -EEEETTSCEEEEETTT
T ss_pred -EEecCCceEEEEcCcc
Confidence 9999999999999854
No 117
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.3e-25 Score=238.14 Aligned_cols=240 Identities=11% Similarity=0.072 Sum_probs=188.5
Q ss_pred ccceeEEEEcCCCCEE-EEEeCCCcEEEEECC--CCcEEEEeec--cCCccccccccccccccccccceeEEEeeecccc
Q 007234 5 NIRDILTSFSPALDYF-AICSGDARIKIWDTL--KGQVQTEFAD--IASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK 79 (612)
Q Consensus 5 ~V~~l~~~fspdg~~l-as~s~dg~i~iwd~~--~~~~~~~~~~--~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~ 79 (612)
.|+++ +|+|+|++| |+|+.||.|+|||+. +++.+..+.. +... +.++.|.+.
T Consensus 104 ~v~~~--~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~------------------v~~~~~sp~--- 160 (450)
T 2vdu_B 104 YIRNL--RLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKR------------------PNAISIAED--- 160 (450)
T ss_dssp CEEEE--EECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSC------------------EEEEEECTT---
T ss_pred ceEEE--EEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCC------------------ceEEEEcCC---
Confidence 57555 999999996 889899999999999 8888887763 2333 445555443
Q ss_pred cccccCCcEEEEEECCCcEEEEEcCCCeEEE---EeccCCCCCeEEEEEecC---CCEEEEEecCCcEEEEECCCCceeE
Q 007234 80 KKRKLGSSLLVLGTGGGDVLALAVSAGQLKW---RLSDCHPGGVSAISFATH---GSCIYSAGADGMVCEIDPLTGSLLG 153 (612)
Q Consensus 80 ~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~---~~~~~h~~~V~~l~~sp~---~~~l~s~s~dg~v~iwd~~~~~~~~ 153 (612)
+.+|++|+.+|.|++|++.++.... ....+|...|++++|+|+ +++|++|+.|++|++||+.+++.+.
T Consensus 161 ------~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~ 234 (450)
T 2vdu_B 161 ------DTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVD 234 (450)
T ss_dssp ------SSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEE
T ss_pred ------CCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceee
Confidence 7899999999999999998876542 133579999999999999 9999999999999999999999888
Q ss_pred E-EecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEec-------------------------CCCCEEEE
Q 007234 154 K-FRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSG-------------------------HPGAVRFM 205 (612)
Q Consensus 154 ~-~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~-------------------------h~~~v~~l 205 (612)
. +.+|...|.+++|+ ++++|++++ +.|++||+++++++..+.. +...|.++
T Consensus 235 ~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i 313 (450)
T 2vdu_B 235 KWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKI 313 (450)
T ss_dssp EECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEE
T ss_pred eeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEE
Confidence 7 55788999999999 999999998 8999999999998888863 23579999
Q ss_pred EEeeCCcEEEEEEcCCCeEEEEEc--CCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEec------CCcEE
Q 007234 206 TFSDNGKYVLSSAVGERYIALWRT--DGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE------TGVCY 277 (612)
Q Consensus 206 ~~sp~~~~l~s~s~~d~~i~vwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~------dg~i~ 277 (612)
+|+|+++++++++..|+.|++|++ ..+... ..+..+..+ ..+..+.|+ |++.++++++. ++.|.
T Consensus 314 ~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l--~~~~~~~~~-~~v~~~~~~-----~~~~~v~~~~~~~~~~~~~~i~ 385 (450)
T 2vdu_B 314 IKSKNLPFVAFFVEATKCIIILEMSEKQKGDL--ALKQIITFP-YNVISLSAH-----NDEFQVTLDNKESSGVQKNFAK 385 (450)
T ss_dssp EECSSSSEEEEEETTCSEEEEEEECSSSTTCE--EEEEEEECS-SCEEEEEEE-----TTEEEEEECCTTCCSSCCCSEE
T ss_pred EEeCCCCEEEEEECCCCeEEEEEeccCCCCce--eeccEeccC-CceEEEEec-----CCcEEEEEecccCCCCCCcceE
Confidence 999999999998756999999999 443211 133444444 445567776 75444444343 45588
Q ss_pred EEECC
Q 007234 278 IWYGQ 282 (612)
Q Consensus 278 iwd~~ 282 (612)
+|.+.
T Consensus 386 v~~~~ 390 (450)
T 2vdu_B 386 FIEYN 390 (450)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88754
No 118
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=6.8e-26 Score=231.21 Aligned_cols=233 Identities=11% Similarity=0.058 Sum_probs=178.5
Q ss_pred cccceeEEEEcCCCCEEEEEeCCCcEEEEECC---------CCcEEEEee-ccCCccccccccccccccccccceeEEEe
Q 007234 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTL---------KGQVQTEFA-DIASTETTSLYGNRLEREHLSVDYTCMKW 73 (612)
Q Consensus 4 ~~V~~l~~~fspdg~~las~s~dg~i~iwd~~---------~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~~~~~~~~~w 73 (612)
.+|+.+ +|+|+ +++++.|++|++|+.. +++.+..+. +|.. .+.++.|
T Consensus 77 ~~v~~~--~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~v~~~~~ 133 (343)
T 3lrv_A 77 PNPRTG--GEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSAN------------------EIIYMYG 133 (343)
T ss_dssp ECCCTT--CCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSS------------------CEEEEEC
T ss_pred CCceee--eeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCC------------------CEEEEEc
Confidence 356555 88888 9999999999999766 333333332 2222 3455555
Q ss_pred eecccccccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCcee-
Q 007234 74 LSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLL- 152 (612)
Q Consensus 74 ~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~- 152 (612)
.+.. . +.++++|+.||.|++||+.+++........|...|++++|+|++.+|++|+.||.|++||+++++.+
T Consensus 134 ~~~~-~------~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~ 206 (343)
T 3lrv_A 134 HNEV-N------TEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQAS 206 (343)
T ss_dssp CC----------CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCC
T ss_pred CCCC-C------CCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCc
Confidence 5510 0 7889999999999999999999876655556778999999999999999999999999999999988
Q ss_pred EEEec-CCCCeeEEEECCCCCEEEEeC-CeEEEEEcCCCeeEEEEec---CCCCEE--EEEEeeCCcEEEEEEcCCCeEE
Q 007234 153 GKFRA-STKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSG---HPGAVR--FMTFSDNGKYVLSSAVGERYIA 225 (612)
Q Consensus 153 ~~~~~-~~~~v~~l~~spdg~~l~~~~-g~i~lwd~~~~~~~~~~~~---h~~~v~--~l~~sp~~~~l~s~s~~d~~i~ 225 (612)
..+.. |..+|++++|+|+|.+|++++ +.|++||+++++.+..+.. |...+. +++|+|+|++|++++..|+.++
T Consensus 207 ~~~~~~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~ 286 (343)
T 3lrv_A 207 SRFPVDEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLT 286 (343)
T ss_dssp EECCCCTTSCEEEEEECTTSSEEEEEESSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEE
T ss_pred cEEeccCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEE
Confidence 78888 899999999999999999998 8999999999876554443 444444 6999999999999873399999
Q ss_pred EEEcCCCccccceeeEeecCCceeEEeEEecCCccCC---CCcEEEEEecCCcEEEEE
Q 007234 226 LWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDD---AGLYVLAISETGVCYIWY 280 (612)
Q Consensus 226 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~t~s~dg~i~iwd 280 (612)
+|++...... ... .....+.|. + +...+++++.||.+.++-
T Consensus 287 v~~~~~~~~~-----~~~----~~~~~~~~~-----~~~~~~~~l~~~~~d~~~~~~~ 330 (343)
T 3lrv_A 287 IYKFDKKTKN-----WTK----DEESALCLQ-----SDTADFTDMDVVCGDGGIAAIL 330 (343)
T ss_dssp EEEECTTTCS-----EEE----EEEEECCC---------CCCCEEEEEEETTEEEEEE
T ss_pred EEEEcccccc-----eEe----cCceeEecC-----ccccccceeEEEecCCceEEEE
Confidence 9999776532 111 223444454 5 788999999999998874
No 119
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.94 E-value=7.5e-27 Score=244.90 Aligned_cols=249 Identities=14% Similarity=0.176 Sum_probs=189.6
Q ss_pred CcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccc
Q 007234 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (612)
Q Consensus 3 s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (612)
+..| .+|+|||||++||+++.||.|+|||.++ ++..+. |...+. ...+.+++|.|.
T Consensus 85 ~~~V--~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~-------------~~sv~svafSPD------ 140 (588)
T 2j04_A 85 VCYP--RVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLS-------------SRTYHCFEWNPI------ 140 (588)
T ss_dssp SCCE--EEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCST-------------TTCEEEEEECSS------
T ss_pred CCcE--EEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccc-------------cccEEEEEEcCC------
Confidence 4567 4569999999999999999999999644 666555 443211 123445555443
Q ss_pred ccCCcEEEEEECCCcEEEEEcCCCeE-------EEEe---ccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCce-
Q 007234 83 KLGSSLLVLGTGGGDVLALAVSAGQL-------KWRL---SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL- 151 (612)
Q Consensus 83 ~~~~~~l~~gs~~g~I~vwd~~~~~~-------~~~~---~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~- 151 (612)
+++|++|+.||+|++||+.++.. +..+ ..+|.+.|.+++|+|+| +++++.|++|++||+..++.
T Consensus 141 ---G~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~ 215 (588)
T 2j04_A 141 ---ESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQ 215 (588)
T ss_dssp ---SSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSC
T ss_pred ---CCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccc
Confidence 88999999999999999998852 3444 26788999999999999 88899999999999988774
Q ss_pred --eEEEe-cCCCCeeEEEECCCCCEEEEeC-CeEEEEEcCCCeeEEEEecCCCCEEEEEE--eeCCcEEEEEEcCCCeEE
Q 007234 152 --LGKFR-ASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTF--SDNGKYVLSSAVGERYIA 225 (612)
Q Consensus 152 --~~~~~-~~~~~v~~l~~spdg~~l~~~~-g~i~lwd~~~~~~~~~~~~h~~~v~~l~~--sp~~~~l~s~s~~d~~i~ 225 (612)
.++++ +|...|.+++|+ |+.+|+++ ++|++||+.+++......+|...|..+.| +|++..+++++ +||+ +
T Consensus 216 ~~~~tL~~~h~~~V~svaFs--g~~LASa~~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~-edG~-k 291 (588)
T 2j04_A 216 PVSRMIQNASRRKITDLKIV--DYKVVLTCPGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSN-KTSY-K 291 (588)
T ss_dssp CCEEEEECCCSSCCCCEEEE--TTEEEEECSSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECS-SCEE-E
T ss_pred cceeeecccccCcEEEEEEE--CCEEEEEeCCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEc-CCCC-E
Confidence 35674 677899999999 68888888 99999999988874444489999999999 99998888876 7999 9
Q ss_pred EEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCC
Q 007234 226 LWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSK 305 (612)
Q Consensus 226 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~ 305 (612)
+|..+. +.++ ||+..+++. |+++++|+..... +..... ...+.+.. ++|
T Consensus 292 lw~~d~---------------------~~~s-----pd~~l~a~~--d~~v~lW~~~g~~-l~~~~~-~~~I~~va-~SP 340 (588)
T 2j04_A 292 VLLEDE---------------------LHVT-----ADNIIAPYL--EKKFKKWSTIWNE-FNNYET-TLVIHGIS-LSP 340 (588)
T ss_dssp EEESSS---------------------EEEE-----CCCSSHHHH--HHHHHHTTTTTTS-SSSSCC-EEEEEEEE-ECT
T ss_pred EEeecc---------------------EEEC-----CCceEEEEc--CCEEEEEECCCCc-eeeecc-ceEEEEEE-ECC
Confidence 999761 2255 888877664 9999999875444 333433 33333333 788
Q ss_pred CCcccchhhhcccc
Q 007234 306 SQKSATAAIFAAKL 319 (612)
Q Consensus 306 ~~~~~~~~i~~~~~ 319 (612)
+|+ .++++..
T Consensus 341 dG~----~lA~~~~ 350 (588)
T 2j04_A 341 DGY----SIAIVYD 350 (588)
T ss_dssp TSS----EEEEEEE
T ss_pred CCC----EEEEEEe
Confidence 887 5555544
No 120
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.94 E-value=4.3e-26 Score=237.28 Aligned_cols=239 Identities=9% Similarity=-0.006 Sum_probs=160.8
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCcEEE-----EeeccCCccccccccccccccccccceeEEEeeecccccccccCC
Q 007234 12 SFSPALDYFAICSGDARIKIWDTLKGQVQT-----EFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGS 86 (612)
Q Consensus 12 ~fspdg~~las~s~dg~i~iwd~~~~~~~~-----~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 86 (612)
.+++++.+||+++.|++|+|||..+++... .+.+|.+.|.++.|++.... ..+.+ +
T Consensus 96 ~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~-----------~~~~d--------~ 156 (393)
T 4gq1_A 96 SSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSA-----------DNRLA--------E 156 (393)
T ss_dssp -CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECT-----------TCSEE--------E
T ss_pred ecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEcccccc-----------ccCCC--------C
Confidence 556677899999999999999999887543 24556665555555432000 00011 6
Q ss_pred cEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCC-EEEEEecCCcEEEEECCCCceeEEE----------
Q 007234 87 SLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTGSLLGKF---------- 155 (612)
Q Consensus 87 ~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~-~l~s~s~dg~v~iwd~~~~~~~~~~---------- 155 (612)
++|++|+.|++|+|||+.++.....+. +|...|.+++|+|++. +|++|+.|++|++||+++++.....
T Consensus 157 ~~las~s~D~tv~~Wd~~~~~~~~~~~-~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~ 235 (393)
T 4gq1_A 157 QVIASVGDDCTLIIWRLTDEGPILAGY-PLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPW 235 (393)
T ss_dssp EEEEEEETTSEEEEEEEETTEEEEEEE-ECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCC
T ss_pred CEEEEEECCCeEEEEECCCCceeeeec-CCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccce
Confidence 799999999999999999888776664 6889999999999875 7999999999999999887654332
Q ss_pred ---------------ecCCCCeeEEEEC-CCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEee--------
Q 007234 156 ---------------RASTKGISCMAVS-SDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSD-------- 209 (612)
Q Consensus 156 ---------------~~~~~~v~~l~~s-pdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp-------- 209 (612)
.+|...+.++.|+ |||+.+++++ +++++||+.+++....+..|...+..+.+.|
T Consensus 236 ~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 315 (393)
T 4gq1_A 236 LLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLF 315 (393)
T ss_dssp SEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSS
T ss_pred EEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEcccccccccc
Confidence 2455678899986 7999999998 8999999998887777776665555444333
Q ss_pred -----------CCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEE
Q 007234 210 -----------NGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYI 278 (612)
Q Consensus 210 -----------~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~i 278 (612)
.+..++++++.|+.|++||+.++... .....+. ..+..++|+ |||++|++++.+| +.+
T Consensus 316 ~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~----~~~~~~~-~~V~svafs-----pdG~~LA~as~~G-v~l 384 (393)
T 4gq1_A 316 PSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSN----SIPIQLG-MPIVDFCWH-----QDGSHLAIATEGS-VLL 384 (393)
T ss_dssp CCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCC----EEEEECS-SCEEEEEEC-----TTSSEEEEEESSE-EEE
T ss_pred CcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEE----EEecCCC-CcEEEEEEc-----CCCCEEEEEeCCC-eEE
Confidence 23445555558999999999988654 1222333 456778887 9999999999876 555
Q ss_pred EEC
Q 007234 279 WYG 281 (612)
Q Consensus 279 wd~ 281 (612)
|.+
T Consensus 385 vrL 387 (393)
T 4gq1_A 385 TRL 387 (393)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
No 121
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.94 E-value=3.5e-24 Score=222.25 Aligned_cols=240 Identities=10% Similarity=0.061 Sum_probs=189.7
Q ss_pred eEEEEcCCCCEE-EEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCc
Q 007234 9 ILTSFSPALDYF-AICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (612)
Q Consensus 9 l~~~fspdg~~l-as~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (612)
.+++|+|+|+++ ++++.|++|++||..+++.+..+..+. . ..++.|.+. ++
T Consensus 35 ~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~------------------v~~~~~spd---------g~ 86 (391)
T 1l0q_A 35 MGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-S------------------PQGVAVSPD---------GK 86 (391)
T ss_dssp EEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-S------------------EEEEEECTT---------SS
T ss_pred ceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-C------------------ccceEECCC---------CC
Confidence 356999999987 566689999999999999988876433 3 334455443 56
Q ss_pred EEE-EEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEE-EEEecCCcEEEEECCCCceeEEEecCCCCeeEE
Q 007234 88 LLV-LGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCI-YSAGADGMVCEIDPLTGSLLGKFRASTKGISCM 165 (612)
Q Consensus 88 ~l~-~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l-~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l 165 (612)
.++ +++.++.|++||+.+++.+..+. +...+.+++|+|+++.+ ++++.|+.|++||+.+++.+..+..+ ..+.++
T Consensus 87 ~l~~~~~~~~~v~v~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~ 163 (391)
T 1l0q_A 87 QVYVTNMASSTLSVIDTTSNTVAGTVK--TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGI 163 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEE--CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEE
T ss_pred EEEEEECCCCEEEEEECCCCeEEEEEe--CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-CCcceE
Confidence 565 45567999999999999886663 44578999999999987 67888999999999999998888764 457999
Q ss_pred EECCCCCEEE-EeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEc--CCCeEEEEEcCCCccccceee
Q 007234 166 AVSSDGKMLA-TAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV--GERYIALWRTDGVKKQSASCV 240 (612)
Q Consensus 166 ~~spdg~~l~-~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~--~d~~i~vwd~~~~~~~~~~~~ 240 (612)
+|+|+|++++ +++ +.|++||+++++.+..+. +...+.+++|+|+++++++++. .++.|++||+.+++..
T Consensus 164 ~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~----- 237 (391)
T 1l0q_A 164 AVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKIT----- 237 (391)
T ss_dssp EECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEE-----
T ss_pred EECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEE-----
Confidence 9999999884 544 799999999999888776 5567899999999999998874 5899999999887643
Q ss_pred EeecCCceeEEeEEecCCccCCCCcEE-EEEecCCcEEEEECCCcceecccC
Q 007234 241 LAMEHPAVFMDCRCIDNGGVDDAGLYV-LAISETGVCYIWYGQNIEELRNTK 291 (612)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~l-~t~s~dg~i~iwd~~~~~~~~~~~ 291 (612)
..+..+.. +..+.++ |+++++ ++++.|+.|++||+.+++.+....
T Consensus 238 ~~~~~~~~-~~~~~~s-----~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~ 283 (391)
T 1l0q_A 238 ARIPVGPD-PAGIAVT-----PDGKKVYVALSFXNTVSVIDTATNTITATMA 283 (391)
T ss_dssp EEEECCSS-EEEEEEC-----TTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred EEEecCCC-ccEEEEc-----cCCCEEEEEcCCCCEEEEEECCCCcEEEEEE
Confidence 33333333 3556676 999877 566789999999999988765443
No 122
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.94 E-value=1.8e-24 Score=213.47 Aligned_cols=248 Identities=14% Similarity=0.085 Sum_probs=178.8
Q ss_pred EEEEEeCCCcEEEEECCCC---cEEEEeeccCCcccccccccccc------cccc-ccceeEEEeeecccccc-------
Q 007234 19 YFAICSGDARIKIWDTLKG---QVQTEFADIASTETTSLYGNRLE------REHL-SVDYTCMKWLSVDRKKK------- 81 (612)
Q Consensus 19 ~las~s~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~s~~~~------~~~~-~~~~~~~~w~~~~~~~~------- 81 (612)
-+++++ ...|++|+..++ +.++++..|..+|..+.+.++.. -|++ ......+++.|.+....
T Consensus 56 ~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g 134 (356)
T 2w18_A 56 CIITAC-EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSG 134 (356)
T ss_dssp EEEEEE-SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEE
T ss_pred EEEEec-cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCC
Confidence 456666 458999999999 89999999999999999888510 0111 11223333333311100
Q ss_pred -----cccCCcEEEEEE---CCCcEEEEEc-CCCeEEEEeccCCCCCeEEEEEec---CCCEEEEEecCCcEEEEECCCC
Q 007234 82 -----RKLGSSLLVLGT---GGGDVLALAV-SAGQLKWRLSDCHPGGVSAISFAT---HGSCIYSAGADGMVCEIDPLTG 149 (612)
Q Consensus 82 -----~~~~~~~l~~gs---~~g~I~vwd~-~~~~~~~~~~~~h~~~V~~l~~sp---~~~~l~s~s~dg~v~iwd~~~~ 149 (612)
....+..++..+ .++.|++|++ .+|+.+..+ .+|...++.++|+| ++..|++++.|++|++||+.+|
T Consensus 135 ~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~-~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TG 213 (356)
T 2w18_A 135 NIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQ-FLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTG 213 (356)
T ss_dssp EEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEE-EECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTC
T ss_pred CeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeee-ccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCC
Confidence 000122333333 3888999999 447766555 47899999999999 7799999999999999999999
Q ss_pred ceeEEEecCCC---CeeEEEECCCCCEEE------------EeC--CeEEEEEcCCCeeEEEE-----ecCCCCEEEEEE
Q 007234 150 SLLGKFRASTK---GISCMAVSSDGKMLA------------TAA--GQLKTFNCSDHKKMQKF-----SGHPGAVRFMTF 207 (612)
Q Consensus 150 ~~~~~~~~~~~---~v~~l~~spdg~~l~------------~~~--g~i~lwd~~~~~~~~~~-----~~h~~~v~~l~~ 207 (612)
++++++.+|.. .+.+++|+|+|++++ +|+ ++|++||..+++.+..+ .+|...+.+..+
T Consensus 214 k~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~ 293 (356)
T 2w18_A 214 QLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV 293 (356)
T ss_dssp CEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE
T ss_pred cEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc
Confidence 99999987543 677889999999874 344 69999999999987765 377766554444
Q ss_pred eeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeec-CCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEEC
Q 007234 208 SDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME-HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (612)
Q Consensus 208 sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~ 281 (612)
+ +.++++++ .|++|+|||+.+++.. ..+. |...++..++|+ |||++|++|+.|++|++||+
T Consensus 294 s--g~~lASgS-~DgTIkIWDl~tGk~l-----~tL~gH~~~vvs~vafS-----PDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 294 K--DHCAAAIL-TSGTIAIWDLLLGQCT-----ALLPPVSDQHWSFVKWS-----GTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp E--TTEEEEEE-TTSCEEEEETTTCSEE-----EEECCC--CCCCEEEEC-----SSSSEEEEECTTSCEEEEEE
T ss_pred C--CCEEEEEc-CCCcEEEEECCCCcEE-----EEecCCCCCeEEEEEEC-----CCCCEEEEEECCCcEEEecC
Confidence 4 77888877 7999999999998743 4554 444455567887 99999999999999999985
No 123
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.94 E-value=6.9e-25 Score=224.71 Aligned_cols=276 Identities=10% Similarity=0.002 Sum_probs=196.1
Q ss_pred EEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEECCCcEEEEEcCC-CeEE
Q 007234 31 IWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSA-GQLK 109 (612)
Q Consensus 31 iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~-~~~~ 109 (612)
.|+....+.+..+.+|.+.+.++.|+++ ... +.++++|+.||.|++||+.+ +..+
T Consensus 23 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~------------------~~~------g~~l~~~~~dg~i~iw~~~~~~~~~ 78 (368)
T 3mmy_A 23 TDNHNPMKDIEVTSSPDDSIGCLSFSPP------------------TLP------GNFLIAGSWANDVRCWEVQDSGQTI 78 (368)
T ss_dssp CCSSCTTCCEECSSCCSSCEEEEEECCT------------------TSS------SEEEEEEETTSEEEEEEECTTSCEE
T ss_pred cCCCCCcceeEeccCCCCceEEEEEcCC------------------CCC------ceEEEEECCCCcEEEEEcCCCCcee
Confidence 3455566677777777776665555554 110 37899999999999999998 6665
Q ss_pred EEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEEEE--CCCCCEEEEeC--CeEEEEE
Q 007234 110 WRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAV--SSDGKMLATAA--GQLKTFN 185 (612)
Q Consensus 110 ~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~--spdg~~l~~~~--g~i~lwd 185 (612)
.....+|...|++++|+|++++|++++.||.|++||+.+++.+. +..|...|.+++| +|+++++++++ |.|++||
T Consensus 79 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd 157 (368)
T 3mmy_A 79 PKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWD 157 (368)
T ss_dssp EEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEEC
T ss_pred EEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEE
Confidence 45557899999999999999999999999999999999988776 4558899999999 99999999887 8999999
Q ss_pred cCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEec-CCccCCCC
Q 007234 186 CSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCID-NGGVDDAG 264 (612)
Q Consensus 186 ~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 264 (612)
+++++.+..+..|. .+.++.+.+ ..+++++ .++.+.+|++....... ............+..+. ... ...
T Consensus 158 ~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~-~~~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~--~~~ 228 (368)
T 3mmy_A 158 TRSSNPMMVLQLPE-RCYCADVIY--PMAVVAT-AERGLIVYQLENQPSEF---RRIESPLKHQHRCVAIFKDKQ--NKP 228 (368)
T ss_dssp SSCSSCSEEEECSS-CEEEEEEET--TEEEEEE-GGGCEEEEECSSSCEEE---EECCCSCSSCEEEEEEEECTT--SCE
T ss_pred CCCCcEEEEEecCC-CceEEEecC--CeeEEEe-CCCcEEEEEeccccchh---hhccccccCCCceEEEcccCC--CCC
Confidence 99999999888665 566666664 4677776 69999999998765331 11111111112222222 000 112
Q ss_pred cEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEE
Q 007234 265 LYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQK 344 (612)
Q Consensus 265 ~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~ 344 (612)
..+++++.||.|++|++......... ..... . . .......
T Consensus 229 ~~~~~~~~dg~i~i~~~~~~~~~~~~----~~~~~--------~----------~------------------~~~~~~~ 268 (368)
T 3mmy_A 229 TGFALGSIEGRVAIHYINPPNPAKDN----FTFKC--------H----------R------------------SNGTNTS 268 (368)
T ss_dssp EEEEEEETTSEEEEEESSCSCHHHHS----EEEEC--------S----------E------------------EC----C
T ss_pred CeEEEecCCCcEEEEecCCCCccccc----eeeee--------e----------e------------------ccccccc
Confidence 33999999999999998766321100 00000 0 0 0000012
Q ss_pred eeccCCCeEEEEecCCCceEeccccceeeecceeeec
Q 007234 345 ILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN 381 (612)
Q Consensus 345 ~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~~~ 381 (612)
...|...|.+++|+|||++| ++++.|+.+++|++.+
T Consensus 269 ~~~~~~~v~~~~~sp~~~~l-~s~~~dg~i~iwd~~~ 304 (368)
T 3mmy_A 269 APQDIYAVNGIAFHPVHGTL-ATVGSDGRFSFWDKDA 304 (368)
T ss_dssp CCEEECCEEEEEECTTTCCE-EEEETTSCEEEEETTT
T ss_pred ccccccceEEEEEecCCCEE-EEEccCCeEEEEECCC
Confidence 23455689999999999999 9999999999999854
No 124
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.93 E-value=3.4e-25 Score=218.62 Aligned_cols=210 Identities=11% Similarity=0.060 Sum_probs=157.8
Q ss_pred cccceeEEEEcCC----CCEEEEEeCCCcEEEEECCCCcEEEE-eeccCCcccccccccccccccc-------ccceeEE
Q 007234 4 SNIRDILTSFSPA----LDYFAICSGDARIKIWDTLKGQVQTE-FADIASTETTSLYGNRLEREHL-------SVDYTCM 71 (612)
Q Consensus 4 ~~V~~l~~~fspd----g~~las~s~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~s~~~~~~~~-------~~~~~~~ 71 (612)
.+|+.| +|||| ++++++++.+ +++|++.+++.+.. ..+|...+....++++ |.. +...+.+
T Consensus 112 ~~v~sl--a~spd~~~~~~~l~s~g~~--~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~d---G~~~~s~~~~~~~v~~l 184 (356)
T 2w18_A 112 REIRAL--FCSSDDESEKQVLLKSGNI--KAVLGLTKRRLVSSSGTLSDQQVEVMTFAED---GGGKENQFLMPPEETIL 184 (356)
T ss_dssp EEEEEE--CC------CCEEEEEEEEE--EEEEEETTTEEEEEESSSTTCEEEEEEECTT---SCEEEEEEECCCSSCEE
T ss_pred cceEEE--EECCCccccccEEEeCCCe--EEEEecCCCcEEEecccCCCCcEEEEEECCC---CceeeeeccCCCceeeE
Confidence 467767 99999 9999998843 77888888887776 4677777777777665 211 2334455
Q ss_pred EeeecccccccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCC--CCCeEEEEEecCCCEE------------EEEec
Q 007234 72 KWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCH--PGGVSAISFATHGSCI------------YSAGA 137 (612)
Q Consensus 72 ~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h--~~~V~~l~~sp~~~~l------------~s~s~ 137 (612)
.|.+.+.. +.+|++|+.|++|+|||+.+|+++..+..+| ...+.+++|+|+|+++ ++|+.
T Consensus 185 ~fs~~~g~------~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~ 258 (356)
T 2w18_A 185 TFAEVQGM------QEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSP 258 (356)
T ss_dssp EEEEEETS------TTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------C
T ss_pred EeeccCCC------CceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCC
Confidence 66653333 7899999999999999999999998875332 3468888999999876 56788
Q ss_pred CCcEEEEECCCCceeEEEe-----cCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEE-EEEEee
Q 007234 138 DGMVCEIDPLTGSLLGKFR-----ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVR-FMTFSD 209 (612)
Q Consensus 138 dg~v~iwd~~~~~~~~~~~-----~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~-~l~~sp 209 (612)
|++|++||..+++.+..+. +|...+.+..+ ++.++++++ ++|+|||+.+++++.++.+|...+. +++|+|
T Consensus 259 D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSP 336 (356)
T 2w18_A 259 VFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSG 336 (356)
T ss_dssp CEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECS
T ss_pred CcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECC
Confidence 9999999999999887652 45444444444 378899887 8999999999999999999987655 589999
Q ss_pred CCcEEEEEEcCCCeEEEEEc
Q 007234 210 NGKYVLSSAVGERYIALWRT 229 (612)
Q Consensus 210 ~~~~l~s~s~~d~~i~vwd~ 229 (612)
||++|++++ .|++|+|||+
T Consensus 337 DG~~LaSGS-~D~TIklWd~ 355 (356)
T 2w18_A 337 TDSHLLAGQ-KDGNIFVYHY 355 (356)
T ss_dssp SSSEEEEEC-TTSCEEEEEE
T ss_pred CCCEEEEEE-CCCcEEEecC
Confidence 999999997 7999999996
No 125
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.93 E-value=3.4e-24 Score=231.64 Aligned_cols=326 Identities=8% Similarity=-0.031 Sum_probs=229.4
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEE
Q 007234 12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL 91 (612)
Q Consensus 12 ~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~ 91 (612)
+|+|++.++++++.|++|.+||..+++++.++..... +..+.|+++ ++++++
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spd---------------------------g~~l~v 195 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSAS---------------------------GRYLLV 195 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTT---------------------------SCEEEE
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCC---------------------------CCEEEE
Confidence 6899999999999999999999999999998873222 334444444 889999
Q ss_pred EECCCcEEEEEc--CCCeEEEEeccCCCCCeEEEEEec----CCCEEEEEe-cCCcEEEEECCCCceeEEEecC------
Q 007234 92 GTGGGDVLALAV--SAGQLKWRLSDCHPGGVSAISFAT----HGSCIYSAG-ADGMVCEIDPLTGSLLGKFRAS------ 158 (612)
Q Consensus 92 gs~~g~I~vwd~--~~~~~~~~~~~~h~~~V~~l~~sp----~~~~l~s~s-~dg~v~iwd~~~~~~~~~~~~~------ 158 (612)
++.++.|.+||+ .+++++.++. +...+..++|+| +|+++++++ .+++|.+||..+++++..+..+
T Consensus 196 ~~~d~~V~v~D~~~~t~~~~~~i~--~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~ 273 (543)
T 1nir_A 196 IGRDARIDMIDLWAKEPTKVAEIK--IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDT 273 (543)
T ss_dssp EETTSEEEEEETTSSSCEEEEEEE--CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSS
T ss_pred ECCCCeEEEEECcCCCCcEEEEEe--cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCc
Confidence 999999999999 8888887774 456789999999 999999988 4899999999999999888652
Q ss_pred -----CCCeeEEEECCCCCEEEEeC---CeEEEEEcCCCeeEE--EEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEE
Q 007234 159 -----TKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQ--KFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWR 228 (612)
Q Consensus 159 -----~~~v~~l~~spdg~~l~~~~---g~i~lwd~~~~~~~~--~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd 228 (612)
...+.++.++|++..+++.. +.|.+||+.+.+.+. .+. +...+..+.|+|+|+++++++..+++|.+||
T Consensus 274 ~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg~~l~va~~~~~~v~v~D 352 (543)
T 1nir_A 274 QTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSHRYFMTAANNSNKVAVID 352 (543)
T ss_dssp CCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE-CCSSCCCEEECTTSCEEEEEEGGGTEEEEEE
T ss_pred cccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec-cCcCccCceECCCCCEEEEEecCCCeEEEEE
Confidence 23789999999887766553 899999998875443 443 5667888999999999888776789999999
Q ss_pred cCCCccccceeeEeecCCceeEEeEEecCCccCCC-CcEEEEEe-cCCcEEEEECCC-------cceecccCCceeEeec
Q 007234 229 TDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDA-GLYVLAIS-ETGVCYIWYGQN-------IEELRNTKATKILSSS 299 (612)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~t~s-~dg~i~iwd~~~-------~~~~~~~~~~~~~~~~ 299 (612)
+.+++......+....|+...... +. |+ +..++++. .|++|.+||..+ ++.++.++.......
T Consensus 353 ~~tg~l~~~i~~g~~ph~g~g~~~--~~-----p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~- 424 (543)
T 1nir_A 353 SKDRRLSALVDVGKTPHPGRGANF--VH-----PKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSL- 424 (543)
T ss_dssp TTTTEEEEEEECSSSBCCTTCEEE--EE-----TTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCC-
T ss_pred CCCCeEEEeeccCCCCCCCCCccc--CC-----CCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCce-
Confidence 999875411111111233323221 33 66 56666665 589999999988 666655543321111
Q ss_pred ccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEe--------eccCCCeEEEEecCCCceEeccc---
Q 007234 300 EDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKI--------LVNSGEDINLNCSQDGVLLPMSQ--- 368 (612)
Q Consensus 300 ~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~--------~~h~~~v~~l~~S~dg~~l~~s~--- 368 (612)
...++|+++ .+.++..-+--.-.+..+.+.+-......++.+ ..+...+..+.|+|||+++.++.
T Consensus 425 ~v~~~pdg~----~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~ 500 (543)
T 1nir_A 425 FIKTHPKSS----HLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNG 500 (543)
T ss_dssp CEECCTTCC----EEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECC
T ss_pred EEEcCCCCC----cEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecC
Confidence 122678877 555554210000012334444433222223343 24566799999999999984442
Q ss_pred -cceeeecceeee
Q 007234 369 -SLLKSKRGRYVQ 380 (612)
Q Consensus 369 -s~d~~~~~w~~~ 380 (612)
+.|+.+.+|+..
T Consensus 501 ~~~~~~i~v~D~~ 513 (543)
T 1nir_A 501 KNDSSALVVVDDK 513 (543)
T ss_dssp TTSCCEEEEEETT
T ss_pred CCCCCeEEEEECC
Confidence 358999999864
No 126
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.93 E-value=3e-24 Score=220.16 Aligned_cols=232 Identities=13% Similarity=0.100 Sum_probs=174.2
Q ss_pred EEEcCCCCEEE-EEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEE
Q 007234 11 TSFSPALDYFA-ICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (612)
Q Consensus 11 ~~fspdg~~la-s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (612)
+++++++++++ +++.|++|+|||..+++.+..+. +...+. ++.|. ...+
T Consensus 64 ~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~------------------~v~~~-----------~~~~ 113 (355)
T 3vu4_A 64 VRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVK------------------DLFLS-----------REFI 113 (355)
T ss_dssp EEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE-CSSCEE------------------EEEEC-----------SSEE
T ss_pred EEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE-CCCceE------------------EEEEc-----------CCEE
Confidence 48899998885 56678999999999999988875 333333 33332 2233
Q ss_pred EEEECCCcEEEEEcCCC-eEEEEeccCCCCCeEEEEEecCCCEEEE--EecCCcEEEEECCCCc----------------
Q 007234 90 VLGTGGGDVLALAVSAG-QLKWRLSDCHPGGVSAISFATHGSCIYS--AGADGMVCEIDPLTGS---------------- 150 (612)
Q Consensus 90 ~~gs~~g~I~vwd~~~~-~~~~~~~~~h~~~V~~l~~sp~~~~l~s--~s~dg~v~iwd~~~~~---------------- 150 (612)
+++ .++.|++||+.++ +.+..+.. +...+++++ ..++. |+.||.|++||+.+++
T Consensus 114 ~~~-~~~~i~i~d~~~~~~~~~~~~~----~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p 186 (355)
T 3vu4_A 114 VVS-YGDVISVFKFGNPWKRITDDIR----FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILG 186 (355)
T ss_dssp EEE-ETTEEEEEESSTTCCBSSCCEE----EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------
T ss_pred EEE-EcCEEEEEECCCCceeeEEecc----CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCc
Confidence 443 4788999999988 55544321 455566777 56665 5789999999998865
Q ss_pred eeEEEecCCCCeeEEEECCCCCEEEEeC--Ce-EEEEEcCCCeeEEEEe-c-CCCCEEEEEEeeCCcEEEEEEcCCCeEE
Q 007234 151 LLGKFRASTKGISCMAVSSDGKMLATAA--GQ-LKTFNCSDHKKMQKFS-G-HPGAVRFMTFSDNGKYVLSSAVGERYIA 225 (612)
Q Consensus 151 ~~~~~~~~~~~v~~l~~spdg~~l~~~~--g~-i~lwd~~~~~~~~~~~-~-h~~~v~~l~~sp~~~~l~s~s~~d~~i~ 225 (612)
.+..+.+|...|.+++|+|+|++|++++ |+ |++||+++++++..+. + |...|.+++|+|+|++|++++ .|++|+
T Consensus 187 ~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s-~d~~v~ 265 (355)
T 3vu4_A 187 KGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVS-DKWTLH 265 (355)
T ss_dssp CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEE-TTCEEE
T ss_pred ccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEE-CCCEEE
Confidence 2788899999999999999999999998 87 9999999999999998 6 999999999999999999998 799999
Q ss_pred EEEcCCCcccccee-----------------eEeecC-CceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcc
Q 007234 226 LWRTDGVKKQSASC-----------------VLAMEH-PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE 285 (612)
Q Consensus 226 vwd~~~~~~~~~~~-----------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~ 285 (612)
+||+.......... .+.+.. .......++|+ ++++++++++.||.+++|++..++
T Consensus 266 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~-----~d~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 266 VFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWI-----SESSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp EEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEES-----SSSEEEEEETTTTEEEEEEEEEET
T ss_pred EEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEe-----CCCCEEEEEeCCCeEEEEEEEcCC
Confidence 99998754221100 000110 01111345666 999999999999999999976554
No 127
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.93 E-value=1.5e-23 Score=219.47 Aligned_cols=311 Identities=8% Similarity=-0.031 Sum_probs=217.5
Q ss_pred ccceeEEEEcCCCC-EEEEEe----CCC----cEEEEEC--CCCcEE--EEeeccCCccccccccccc-----ccccccc
Q 007234 5 NIRDILTSFSPALD-YFAICS----GDA----RIKIWDT--LKGQVQ--TEFADIASTETTSLYGNRL-----EREHLSV 66 (612)
Q Consensus 5 ~V~~l~~~fspdg~-~las~s----~dg----~i~iwd~--~~~~~~--~~~~~~~~~~~~~~~s~~~-----~~~~~~~ 66 (612)
+|+.. +|++.|. ++++|+ .|| +|++||+ .+++++ ..+.+|...+....+...- ..+...
T Consensus 64 ~~~~~--~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~- 140 (415)
T 2hqs_A 64 EVQPA--AWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKG- 140 (415)
T ss_dssp GCCHH--HHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCC-
T ss_pred CcCHH--HHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCC-
Confidence 44444 7888875 666776 468 8999999 999977 4577777766655554310 000000
Q ss_pred ceeEEEeeecccccccccCCcEEEEEECC------CcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCC-
Q 007234 67 DYTCMKWLSVDRKKKRKLGSSLLVLGTGG------GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADG- 139 (612)
Q Consensus 67 ~~~~~~w~~~~~~~~~~~~~~~l~~gs~~------g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg- 139 (612)
.+ +..++.++.+ +.|++||+..+.. ..+ .+|...|.+++|+|+|+.|++++.++
T Consensus 141 --------~~---------~~~l~~~s~~~~~~~~~~i~i~d~~g~~~-~~l-~~~~~~v~~~~~Spdg~~la~~s~~~~ 201 (415)
T 2hqs_A 141 --------AF---------RTRIAYVVQTNGGQFPYELRVSDYDGYNQ-FVV-HRSPQPLMSPAWSPDGSKLAYVTFESG 201 (415)
T ss_dssp --------CT---------TCEEEEEEECSSSSCCEEEEEEETTSCSC-EEE-EEESSCEEEEEECTTSSEEEEEECTTS
T ss_pred --------cC---------CCEEEEEEecCCCCccceEEEEcCCCCCC-EEE-eCCCCcceeeEEcCCCCEEEEEEecCC
Confidence 00 3345554443 6899999985543 344 46889999999999999999999875
Q ss_pred --cEEEEECCCCceeEEEecCCCCeeEEEECCCCCEEE-EeC----CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCc
Q 007234 140 --MVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLA-TAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGK 212 (612)
Q Consensus 140 --~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~-~~~----g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~ 212 (612)
.|++||+.+++.. .+..+...+.+++|+|||+.|+ +++ ..|++||+.+++. ..+..|...+.+++|+|||+
T Consensus 202 ~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~ 279 (415)
T 2hqs_A 202 RSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQ 279 (415)
T ss_dssp SCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSS
T ss_pred CcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCC
Confidence 9999999998875 4666778899999999999888 554 3699999998875 56778899999999999999
Q ss_pred EEEEEEcCCC--eEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecC---CcEEEEECCCccee
Q 007234 213 YVLSSAVGER--YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET---GVCYIWYGQNIEEL 287 (612)
Q Consensus 213 ~l~s~s~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~d---g~i~iwd~~~~~~~ 287 (612)
+|++++..++ .|.+||+.+++.. .+..+...+....|+ |+|++|++++.+ +.|++||+.+++..
T Consensus 280 ~l~~~s~~~g~~~i~~~d~~~~~~~------~l~~~~~~~~~~~~s-----pdG~~l~~~~~~~g~~~i~~~d~~~~~~~ 348 (415)
T 2hqs_A 280 NLAFTSDQAGRPQVYKVNINGGAPQ------RITWEGSQNQDADVS-----SDGKFMVMVSSNGGQQHIAKQDLATGGVQ 348 (415)
T ss_dssp EEEEEECTTSSCEEEEEETTSSCCE------ECCCSSSEEEEEEEC-----TTSSEEEEEEECSSCEEEEEEETTTCCEE
T ss_pred EEEEEECCCCCcEEEEEECCCCCEE------EEecCCCcccCeEEC-----CCCCEEEEEECcCCceEEEEEECCCCCEE
Confidence 9998874345 6778888876532 122233345566777 999999988864 58999999988664
Q ss_pred cccCCceeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCce
Q 007234 288 RNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVL 363 (612)
Q Consensus 288 ~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~ 363 (612)
.-... . .+.+. .++|+++ .++.++.++. ...+.+.+- .....+.+..|.+.|.+++|||.-.+
T Consensus 349 ~l~~~-~-~~~~~-~~spdg~----~l~~~s~~~~----~~~l~~~d~--~g~~~~~l~~~~~~v~~~~~~~~~~~ 411 (415)
T 2hqs_A 349 VLSST-F-LDETP-SLAPNGT----MVIYSSSQGM----GSVLNLVST--DGRFKARLPATDGQVKFPAWSPYLHH 411 (415)
T ss_dssp ECCCS-S-SCEEE-EECTTSS----EEEEEEEETT----EEEEEEEET--TSCCEEECCCSSSEEEEEEECCCCCC
T ss_pred EecCC-C-CcCCe-EEcCCCC----EEEEEEcCCC----ccEEEEEEC--CCCcEEEeeCCCCCCcCCcccccccc
Confidence 32221 1 12222 3788888 6777665531 113333331 13345577889899999999997543
No 128
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.92 E-value=3.9e-23 Score=217.41 Aligned_cols=236 Identities=10% Similarity=0.068 Sum_probs=188.5
Q ss_pred cccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccc
Q 007234 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (612)
Q Consensus 4 ~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (612)
..|..+ +|+|+|+++++++.|+.|++||+.+++.+..+..+...+.++.|+++
T Consensus 170 ~~v~~~--~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~------------------------- 222 (433)
T 3bws_A 170 GFVETI--SIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPI------------------------- 222 (433)
T ss_dssp CEEEEE--EEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETT-------------------------
T ss_pred CceeEE--EEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCC-------------------------
Confidence 456444 99999999999999999999999999999888766555544444443
Q ss_pred cCCcEEE-EEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEe--------cCCcEEEEECCCCceeEE
Q 007234 84 LGSSLLV-LGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG--------ADGMVCEIDPLTGSLLGK 154 (612)
Q Consensus 84 ~~~~~l~-~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s--------~dg~v~iwd~~~~~~~~~ 154 (612)
+..++ +++.+|.|++||+.+++.+..+. +...+.+++|+|+++.+++++ .|+.|++||+.+++.+..
T Consensus 223 --~~~l~~~~~~~~~i~~~d~~~~~~~~~~~--~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~ 298 (433)
T 3bws_A 223 --RDLVYCSNWISEDISVIDRKTKLEIRKTD--KIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDT 298 (433)
T ss_dssp --TTEEEEEETTTTEEEEEETTTTEEEEECC--CCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEE
T ss_pred --CCEEEEEecCCCcEEEEECCCCcEEEEec--CCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEee
Confidence 55564 55578999999999999876663 345699999999999999988 488999999999988777
Q ss_pred EecCCCCeeEEEECCCCCEEEEe-C--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcC-----------
Q 007234 155 FRASTKGISCMAVSSDGKMLATA-A--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVG----------- 220 (612)
Q Consensus 155 ~~~~~~~v~~l~~spdg~~l~~~-~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~----------- 220 (612)
+. +...+.+++|+|+++.++++ + +.|++||+++++.+..+. +...+.+++|+|+|+++++++..
T Consensus 299 ~~-~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~ 376 (433)
T 3bws_A 299 IG-PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKK 376 (433)
T ss_dssp EE-EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSC
T ss_pred cc-CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccc
Confidence 64 44578999999999866544 4 899999999999888876 77889999999999988887743
Q ss_pred ---CCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEec-CCcEEEEECCC
Q 007234 221 ---ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-TGVCYIWYGQN 283 (612)
Q Consensus 221 ---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~-dg~i~iwd~~~ 283 (612)
||.|++||+.+++.. ..+.... .+..+.|+ |+|++|++++. |+.|++|+++.
T Consensus 377 g~~dg~v~~~d~~~~~~~-----~~~~~~~-~~~~~~~s-----~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 377 GLVLGKVYVIDTTTDTVK-----EFWEAGN-QPTGLDVS-----PDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp CSSCCEEEEEETTTTEEE-----EEEECSS-SEEEEEEC-----TTSCEEEEEETTTTEEEEEEETT
T ss_pred cccceEEEEEECCCCcEE-----EEecCCC-CCceEEEc-----CCCCEEEEEECCCCeEEEEEecC
Confidence 469999999887643 2333333 35667777 99999998875 99999999753
No 129
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.92 E-value=7e-23 Score=231.05 Aligned_cols=341 Identities=9% Similarity=0.033 Sum_probs=216.4
Q ss_pred cccceeEEEEcCCCCEEEEEeC-CC-----cEEEEECCCCcEEEEeeccCCccccccccccccc----cccc--cceeEE
Q 007234 4 SNIRDILTSFSPALDYFAICSG-DA-----RIKIWDTLKGQVQTEFADIASTETTSLYGNRLER----EHLS--VDYTCM 71 (612)
Q Consensus 4 ~~V~~l~~~fspdg~~las~s~-dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~----~~~~--~~~~~~ 71 (612)
..|..+ +|||||++||+++. || .|++||+.+++....+..+........++..... .+.. .....+
T Consensus 37 ~~~~~~--~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 114 (741)
T 2ecf_A 37 PTLMKP--KVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY 114 (741)
T ss_dssp CCCEEE--EECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCC
T ss_pred CCCCCc--eEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCccee
Confidence 356445 99999999999998 88 8999999999987776544322000000000000 0000 113344
Q ss_pred EeeecccccccccCCcEEEEEECCCcEEEEEcCCC---eEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCC
Q 007234 72 KWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAG---QLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT 148 (612)
Q Consensus 72 ~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~---~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~ 148 (612)
.|.+. ++.|++++. +.|++||+.++ ... .+ ..|...+.+++|+|||++|+.++ ++.|++||+.+
T Consensus 115 ~~SpD---------g~~l~~~~~-~~i~~~d~~~~~~~~~~-~l-~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~ 181 (741)
T 2ecf_A 115 QWSPD---------AQRLLFPLG-GELYLYDLKQEGKAAVR-QL-THGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLAS 181 (741)
T ss_dssp EECTT---------SSEEEEEET-TEEEEEESSSCSTTSCC-BC-CCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTT
T ss_pred EECCC---------CCEEEEEeC-CcEEEEECCCCCcceEE-Ec-ccCCcccccccCCCCCCEEEEEe-CCcEEEEecCC
Confidence 45443 778888887 99999999988 443 33 45778899999999999999887 56899999998
Q ss_pred CceeEEEecCCCC----------------eeEEEECCCCCEEEEeC--C-------------------------------
Q 007234 149 GSLLGKFRASTKG----------------ISCMAVSSDGKMLATAA--G------------------------------- 179 (612)
Q Consensus 149 ~~~~~~~~~~~~~----------------v~~l~~spdg~~l~~~~--g------------------------------- 179 (612)
++.......+... +.+++|+|||++|++++ +
T Consensus 182 g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~ 261 (741)
T 2ecf_A 182 GRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANV 261 (741)
T ss_dssp TEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCC
T ss_pred CCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCC
Confidence 8766554433332 47899999999998875 3
Q ss_pred --eEEEEEcCC-CeeEEEEe--cCCCCEEEEEEeeCCcEEEEEEc----CCCeEEEEEcCCCccccceeeEeecCCce--
Q 007234 180 --QLKTFNCSD-HKKMQKFS--GHPGAVRFMTFSDNGKYVLSSAV----GERYIALWRTDGVKKQSASCVLAMEHPAV-- 248 (612)
Q Consensus 180 --~i~lwd~~~-~~~~~~~~--~h~~~v~~l~~sp~~~~l~s~s~----~d~~i~vwd~~~~~~~~~~~~~~~~~~~~-- 248 (612)
.|++||+.+ ++...... .|...+..++| |||++|++++. .+..|++||+.+++.. .+........
T Consensus 262 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~---~~~~~~~~~~~~ 337 (741)
T 2ecf_A 262 QVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQR---VLAHETSPTWVP 337 (741)
T ss_dssp EEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEE---EEEEEECSSCCC
T ss_pred eeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceE---EEEEcCCCCcCC
Confidence 889999998 87654433 47788999999 99999987753 2568999999988644 2222211111
Q ss_pred eEEeEEecCCccCCCCcEEEEEecCCcEEEEECC-CcceecccCCceeEeecccccCCCCcccchhhh-cccccceecCC
Q 007234 249 FMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ-NIEELRNTKATKILSSSEDVNSKSQKSATAAIF-AAKLQDIVKPA 326 (612)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~-~~~~d~~~~~~ 326 (612)
.+....|+ |||+++++++.||.+++|.+. ++. ..........+.....++++++ .++ ++..++ ..
T Consensus 338 ~~~~~~~s-----pdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~----~l~~~~~~~~---~~ 404 (741)
T 2ecf_A 338 LHNSLRFL-----DDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAG----LAYFRAGIES---AR 404 (741)
T ss_dssp CCSCCEEC-----TTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTT----EEEEEECSSC---TT
T ss_pred cCCceEEC-----CCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCC----EEEEEEeCCC---Cc
Confidence 22345666 999999999999988888764 233 3333332222222212677776 443 333332 00
Q ss_pred CceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccce---eeecceee
Q 007234 327 SVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLL---KSKRGRYV 379 (612)
Q Consensus 327 ~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d---~~~~~w~~ 379 (612)
...++..... ....+.+.. ...+..++|||||++++++.+.. ..+.+++.
T Consensus 405 ~~~l~~~~~~--g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~ 457 (741)
T 2ecf_A 405 ESQIYAVPLQ--GGQPQRLSK-APGMHSASFARNASVYVDSWSNNSTPPQIELFRA 457 (741)
T ss_dssp CBEEEEEETT--CCCCEECCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEET
T ss_pred eEEEEEEEcC--CCCeeeccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEc
Confidence 1122322210 111223433 45688999999999985554432 34555554
No 130
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.90 E-value=8.7e-21 Score=193.41 Aligned_cols=238 Identities=13% Similarity=0.089 Sum_probs=181.9
Q ss_pred EEEEcCCCCEEEEEeC-------CCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccc
Q 007234 10 LTSFSPALDYFAICSG-------DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (612)
Q Consensus 10 ~~~fspdg~~las~s~-------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (612)
.++|+|+|+++++++. ++.|.+||..+++.+..+... ..+.. +.|.+.
T Consensus 45 ~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~------------------~~~s~d------ 99 (353)
T 3vgz_A 45 EMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND-LKPFG------------------ATINNT------ 99 (353)
T ss_dssp EEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES-SCCCS------------------EEEETT------
T ss_pred ceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC-CCcce------------------EEECCC------
Confidence 3499999998888774 568999999999988877532 22223 333332
Q ss_pred ccCCcEEE-EEECCCcEEEEEcCCCeEEEEeccCCCC--------CeEEEEEecCCCEEEEEe--cCCcEEEEECCCCce
Q 007234 83 KLGSSLLV-LGTGGGDVLALAVSAGQLKWRLSDCHPG--------GVSAISFATHGSCIYSAG--ADGMVCEIDPLTGSL 151 (612)
Q Consensus 83 ~~~~~~l~-~gs~~g~I~vwd~~~~~~~~~~~~~h~~--------~V~~l~~sp~~~~l~s~s--~dg~v~iwd~~~~~~ 151 (612)
++.++ ++..++.|.+||+.+++.+..+..++.. .+.+++|+|+|+.+++++ .++.|.+||..+++.
T Consensus 100 ---g~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~ 176 (353)
T 3vgz_A 100 ---TQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKL 176 (353)
T ss_dssp ---TTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEE
T ss_pred ---CCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCce
Confidence 55444 4555788999999999987776432222 278999999999887776 478999999999999
Q ss_pred eEEEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEec----CCCCEEEEEEeeCCcEEEEEEcCCCeEE
Q 007234 152 LGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSG----HPGAVRFMTFSDNGKYVLSSAVGERYIA 225 (612)
Q Consensus 152 ~~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~----h~~~v~~l~~sp~~~~l~s~s~~d~~i~ 225 (612)
+..+..+...+.+++|+|+|+++++++ +.|.+||..+++.+..+.. +...+..++|+|+|+++++++..++.|.
T Consensus 177 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~ 256 (353)
T 3vgz_A 177 KTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVL 256 (353)
T ss_dssp EEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEE
T ss_pred EEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEE
Confidence 888875566688999999999998887 8999999999998887764 5667889999999998888775669999
Q ss_pred EEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEe-cCCcEEEEECCCccee
Q 007234 226 LWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQNIEEL 287 (612)
Q Consensus 226 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s-~dg~i~iwd~~~~~~~ 287 (612)
+||+.+++.. .......+ ..+.++ |+|+++++++ .++.|.+||..+++.+
T Consensus 257 ~~d~~~~~~~---~~~~~~~~----~~~~~s-----~dg~~l~v~~~~~~~v~~~d~~~~~~~ 307 (353)
T 3vgz_A 257 VVDTRNGNIL---AKVAAPES----LAVLFN-----PARNEAYVTHRQAGKVSVIDAKSYKVV 307 (353)
T ss_dssp EEETTTCCEE---EEEECSSC----CCEEEE-----TTTTEEEEEETTTTEEEEEETTTTEEE
T ss_pred EEECCCCcEE---EEEEcCCC----ceEEEC-----CCCCEEEEEECCCCeEEEEECCCCeEE
Confidence 9999887644 12222221 345666 8998766665 6899999998877654
No 131
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.90 E-value=1.6e-21 Score=197.34 Aligned_cols=287 Identities=9% Similarity=0.059 Sum_probs=195.7
Q ss_pred EEcCCCCE-EEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEE
Q 007234 12 SFSPALDY-FAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV 90 (612)
Q Consensus 12 ~fspdg~~-las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~ 90 (612)
.|++++++ +++++.++.|++||..+++....+..+.... .+.|+++ ++.++
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~d---------------------------g~~l~ 55 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSD---------------------------CSNVV 55 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSS---------------------------SCEEE
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCC---------------------------CCEEE
Confidence 57777665 6677779999999999999988776433322 3333333 66566
Q ss_pred EEEC-CCcEEEEEcCCCeE-EEEeccCCCCCeEEEEEecCCCEEEEEecCC---cEEEEECCCCceeEEEecCCCCeeEE
Q 007234 91 LGTG-GGDVLALAVSAGQL-KWRLSDCHPGGVSAISFATHGSCIYSAGADG---MVCEIDPLTGSLLGKFRASTKGISCM 165 (612)
Q Consensus 91 ~gs~-~g~I~vwd~~~~~~-~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg---~v~iwd~~~~~~~~~~~~~~~~v~~l 165 (612)
+++. ++.|.+||+.+++. ...+ ..+..+..+++|+|+|++++++..++ .|.+||+.+++.+..+..+ ..+.++
T Consensus 56 ~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~ 133 (331)
T 3u4y_A 56 VTSDFCQTLVQIETQLEPPKVVAI-QEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGI 133 (331)
T ss_dssp EEESTTCEEEEEECSSSSCEEEEE-EECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEE
T ss_pred EEeCCCCeEEEEECCCCceeEEec-ccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccce
Confidence 5555 78899999999987 5444 44566666699999999999555543 8999999999988887753 456999
Q ss_pred EECCCCCEEEEeC---Ce-EEEEEcCCCeeE----EEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccc
Q 007234 166 AVSSDGKMLATAA---GQ-LKTFNCSDHKKM----QKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA 237 (612)
Q Consensus 166 ~~spdg~~l~~~~---g~-i~lwd~~~~~~~----~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~ 237 (612)
+|+|||+++++++ +. |.+|++.....+ .....+...+..++|+|+|++++.++..++.|.+||+.+++...
T Consensus 134 ~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~- 212 (331)
T 3u4y_A 134 AISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENIT- 212 (331)
T ss_dssp EECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCE-
T ss_pred EECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccc-
Confidence 9999998766654 67 999998764332 12223445678999999999877776678999999998876510
Q ss_pred eeeEeecCCceeEEeEEecCCccCCCCcEEEEEe-cCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhc
Q 007234 238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFA 316 (612)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~ 316 (612)
.+..+... .....+.|+ |+|+++++++ .++.|.+||..+++..... ..... ...+..
T Consensus 213 -~~~~~~~~-~~~~~~~~s-----pdg~~l~v~~~~~~~i~~~d~~~~~~~~~~-----~~~~~--~~~~~~-------- 270 (331)
T 3u4y_A 213 -LLNAVGTN-NLPGTIVVS-----RDGSTVYVLTESTVDVFNFNQLSGTLSFVK-----SFGHG--LLIDPR-------- 270 (331)
T ss_dssp -EEEEEECS-SCCCCEEEC-----TTSSEEEEECSSEEEEEEEETTTTEEEEEE-----EEECC--CCCCCG--------
T ss_pred -eeeeccCC-CCCceEEEC-----CCCCEEEEEEcCCCEEEEEECCCCceeeec-----ccccc--cccCCC--------
Confidence 12233333 233456676 9999877765 4778999999887652100 00000 000000
Q ss_pred ccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceeeecc
Q 007234 317 AKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNR 382 (612)
Q Consensus 317 ~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~~~~ 382 (612)
.......++|+|||++|.++++.++.+.+|++...
T Consensus 271 -------------------------------~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 271 -------------------------------PLFGANQMALNKTETKLFISANISRELKVFTISGK 305 (331)
T ss_dssp -------------------------------GGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSC
T ss_pred -------------------------------CcccccceEECCCCCEEEEecCCCCcEEEEEecCC
Confidence 00122457899999988677777889999998543
No 132
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.89 E-value=2.2e-22 Score=226.30 Aligned_cols=317 Identities=9% Similarity=0.045 Sum_probs=208.0
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCC---ccccccccccccccccccceeEEEeeecccccccccCC
Q 007234 10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIAS---TETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGS 86 (612)
Q Consensus 10 ~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~---~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 86 (612)
+++|||||+++++ +.||+|++||+.+++....+..+.. .+....|+++ +
T Consensus 21 ~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpD---------------------------g 72 (723)
T 1xfd_A 21 EAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPD---------------------------R 72 (723)
T ss_dssp CCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTT---------------------------S
T ss_pred ccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCC---------------------------C
Confidence 4499999998876 7899999999999998877765543 2444455554 7
Q ss_pred cEEEEEECC---------CcEEEEEcCCCeEEEEec--cCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEE
Q 007234 87 SLLVLGTGG---------GDVLALAVSAGQLKWRLS--DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKF 155 (612)
Q Consensus 87 ~~l~~gs~~---------g~I~vwd~~~~~~~~~~~--~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~ 155 (612)
++|++++.+ +.|.+||+.+++.. .+. .+|...+..++|+|||+.|+.++. +.|++||+.+++.....
T Consensus 73 ~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~ 150 (723)
T 1xfd_A 73 EYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQ-SLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVV 150 (723)
T ss_dssp SEEEEEESCCCCSSSCCCSEEEEEESSSCCCE-ECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEE
T ss_pred CEEEEEecCccceeecceeeEEEEECCCCceE-eccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEe
Confidence 888888774 67889999998762 332 345556899999999999999875 79999999998877666
Q ss_pred ecCCCCe------------------eEEEECCCCCEEEEeC--C----------------------------------eE
Q 007234 156 RASTKGI------------------SCMAVSSDGKMLATAA--G----------------------------------QL 181 (612)
Q Consensus 156 ~~~~~~v------------------~~l~~spdg~~l~~~~--g----------------------------------~i 181 (612)
..+...+ .+++|+|||+.|++++ + .|
T Consensus 151 ~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l 230 (723)
T 1xfd_A 151 STGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISL 230 (723)
T ss_dssp CCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEE
T ss_pred cCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEE
Confidence 5544333 7899999999999875 2 79
Q ss_pred EEEEcCCCeeEEEEecC------CCCEEEEEEeeCCcEEEEEEcC---CCeEEEEEcCCCccccceeeEeecCCceeE--
Q 007234 182 KTFNCSDHKKMQKFSGH------PGAVRFMTFSDNGKYVLSSAVG---ERYIALWRTDGVKKQSASCVLAMEHPAVFM-- 250 (612)
Q Consensus 182 ~lwd~~~~~~~~~~~~h------~~~v~~l~~sp~~~~l~s~s~~---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~-- 250 (612)
++||+.+++....+..+ ...+..++|+|||+++++.+.. +..|++||+.+++.. .+....+.....
T Consensus 231 ~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~---~~~~~~~~~~~~~~ 307 (723)
T 1xfd_A 231 HVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCT---KKHEDESEAWLHRQ 307 (723)
T ss_dssp EEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEE---EEEEEECSSCCCCC
T ss_pred EEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcce---EEEEeccCCEEecc
Confidence 99999998865666654 5678999999999988766422 357999999887643 222222222111
Q ss_pred -EeEEecCCccCCCCcEEEEE--ecCC------cEEEEE-CCCcce--ecccCCceeEeecccccCCCCcccchhhhccc
Q 007234 251 -DCRCIDNGGVDDAGLYVLAI--SETG------VCYIWY-GQNIEE--LRNTKATKILSSSEDVNSKSQKSATAAIFAAK 318 (612)
Q Consensus 251 -~~~~~~~~~~~~~~~~l~t~--s~dg------~i~iwd-~~~~~~--~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~ 318 (612)
....|+ |||+.|+.. ..+| .|.+|| ..+++. ..........+.....++|+++ .|+..+
T Consensus 308 ~~~~~~s-----pdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~----~l~~~~ 378 (723)
T 1xfd_A 308 NEEPVFS-----KDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGN----KIYFLS 378 (723)
T ss_dssp CCCCEEC-----TTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTT----EEEEEE
T ss_pred CCCceEc-----CCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCC----EEEEEE
Confidence 245666 999977754 4566 577777 344431 3322221111111123788888 554443
Q ss_pred ccceecCCCceEEEEeCCccCceEEEeec---cCCCeEEEEecCCCceEeccccce
Q 007234 319 LQDIVKPASVHTFVAYGLLLKPSFQKILV---NSGEDINLNCSQDGVLLPMSQSLL 371 (612)
Q Consensus 319 ~d~~~~~~~~~~~~~~g~~~~~~~~~~~~---h~~~v~~l~~S~dg~~l~~s~s~d 371 (612)
.++. .....++...-.. ......+.. |...+..++|||||++++++.+.+
T Consensus 379 ~~~~--~~~~~l~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 431 (723)
T 1xfd_A 379 TEDL--PRRRQLYSANTVG-NFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGP 431 (723)
T ss_dssp SSSC--TTCCEEEEECSST-TCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSS
T ss_pred cCCC--CcceEEEEEeCCC-CCCcceecccccCCCCeEEEEECCCCCEEEEEccCC
Confidence 3210 0112233332110 001112332 566688999999999886655443
No 133
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.89 E-value=4.6e-21 Score=207.13 Aligned_cols=274 Identities=10% Similarity=0.053 Sum_probs=203.4
Q ss_pred CcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEEC--CCCceeEEEecCCCCee
Q 007234 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDP--LTGSLLGKFRASTKGIS 163 (612)
Q Consensus 86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~--~~~~~~~~~~~~~~~v~ 163 (612)
+.++++++.++.|.+||..+++++..+..+|. +.+++|+|+|++|++++.|++|++||+ .+++.+.++.. ...+.
T Consensus 149 ~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~-g~~p~ 225 (543)
T 1nir_A 149 NLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-GIEAR 225 (543)
T ss_dssp GEEEEEEGGGTEEEEEETTTCCEEEEEECSTT--EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC-CSEEE
T ss_pred CEEEEEEcCCCeEEEEECCCceEEEEEecCcc--cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec-CCCcc
Confidence 67788888999999999999999888754554 899999999999999999999999999 88999888884 45679
Q ss_pred EEEECC----CCCEEEEeC---CeEEEEEcCCCeeEEEEecC----------C-CCEEEEEEeeCCcEEEEEEcCCCeEE
Q 007234 164 CMAVSS----DGKMLATAA---GQLKTFNCSDHKKMQKFSGH----------P-GAVRFMTFSDNGKYVLSSAVGERYIA 225 (612)
Q Consensus 164 ~l~~sp----dg~~l~~~~---g~i~lwd~~~~~~~~~~~~h----------~-~~v~~l~~sp~~~~l~s~s~~d~~i~ 225 (612)
.++|+| ||+++++++ ++|.+||..+++++..+..+ . ..+.++.++|++..++.+...++.|.
T Consensus 226 ~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~ 305 (543)
T 1nir_A 226 SVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVL 305 (543)
T ss_dssp EEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEE
T ss_pred eEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEE
Confidence 999999 999999887 89999999999999888652 2 37899999998887777666899999
Q ss_pred EEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEe-cCCcEEEEECCCcceecccCCceeEee--cccc
Q 007234 226 LWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQNIEELRNTKATKILSS--SEDV 302 (612)
Q Consensus 226 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~--~~~~ 302 (612)
+||+.+.+.. .+..+.+ ...+..+.|+ |+|+++++++ .+++|.+||..+++.+.........-. ....
T Consensus 306 vvd~~~~~~l---~~~~i~~-~~~~~~~~~s-----pdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~ 376 (543)
T 1nir_A 306 LVNYKDIDNL---TVTSIGA-APFLHDGGWD-----SSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF 376 (543)
T ss_dssp EEECTTSSSC---EEEEEEC-CSSCCCEEEC-----TTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE
T ss_pred EEEecCCCcc---eeEEecc-CcCccCceEC-----CCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc
Confidence 9999886543 1223332 3334556676 9999877665 588999999999987764432110000 0000
Q ss_pred cCCCCcccchhhhcccccceecCCCceEEEEeCCc------cCceEEEeeccCCCeEEEEecCCCceEecccc-------
Q 007234 303 NSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLL------LKPSFQKILVNSGEDINLNCSQDGVLLPMSQS------- 369 (612)
Q Consensus 303 ~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~------~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s------- 369 (612)
+.|++.. .++++... ++.+.+.+-.. ...+.+++..|...+..+.++|||++| .+++
T Consensus 377 ~~p~~g~---~~~s~~~~------d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l-~v~~~~~~~~~ 446 (543)
T 1nir_A 377 VHPKYGP---VWSTSHLG------DGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHL-YVDTTFNPDAR 446 (543)
T ss_dssp EETTTEE---EEEEEBSS------SSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEE-EECCTTCSSHH
T ss_pred CCCCCcc---EEEeccCC------CceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcE-EEecCCCCCcc
Confidence 1233221 33443321 23333333221 256788999998889999999999999 6665
Q ss_pred ceeeecceeeec
Q 007234 370 LLKSKRGRYVQN 381 (612)
Q Consensus 370 ~d~~~~~w~~~~ 381 (612)
.+.++.+|++.+
T Consensus 447 ~~~~v~v~d~~~ 458 (543)
T 1nir_A 447 ISQSVAVFDLKN 458 (543)
T ss_dssp HHTCEEEEETTC
T ss_pred cCceEEEEECCC
Confidence 378999999853
No 134
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.88 E-value=1.5e-20 Score=196.67 Aligned_cols=225 Identities=15% Similarity=0.125 Sum_probs=174.5
Q ss_pred CCEEEEEeCC------CcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEE
Q 007234 17 LDYFAICSGD------ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV 90 (612)
Q Consensus 17 g~~las~s~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~ 90 (612)
+..++.++.+ ++|++||+.. .....+..|...+.++.|+++ ++.|+
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spd---------------------------g~~la 194 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPD---------------------------GSKLA 194 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTT---------------------------SSEEE
T ss_pred CCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCC---------------------------CCEEE
Confidence 6677776654 7999999974 445666666666665556555 78899
Q ss_pred EEECCC---cEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEE-EEecCCc--EEEEECCCCceeEEEecCCCCeeE
Q 007234 91 LGTGGG---DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIY-SAGADGM--VCEIDPLTGSLLGKFRASTKGISC 164 (612)
Q Consensus 91 ~gs~~g---~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~-s~s~dg~--v~iwd~~~~~~~~~~~~~~~~v~~ 164 (612)
.++.++ .|++||+.+++.. .+ ..|...+.+++|+|||+.|+ +++.|+. |++||+.+++. ..+..+...+.+
T Consensus 195 ~~s~~~~~~~i~~~d~~tg~~~-~l-~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~ 271 (415)
T 2hqs_A 195 YVTFESGRSALVIQTLANGAVR-QV-ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTE 271 (415)
T ss_dssp EEECTTSSCEEEEEETTTCCEE-EE-ECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEE
T ss_pred EEEecCCCcEEEEEECCCCcEE-Ee-ecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccc
Confidence 998875 7999999999875 33 45788999999999999877 6666654 99999988876 566677788999
Q ss_pred EEECCCCCEEEEeC---C--eEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcC--CCeEEEEEcCCCccccc
Q 007234 165 MAVSSDGKMLATAA---G--QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVG--ERYIALWRTDGVKKQSA 237 (612)
Q Consensus 165 l~~spdg~~l~~~~---g--~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~--d~~i~vwd~~~~~~~~~ 237 (612)
++|+|||++|++++ + .|++||+.+++. ..+..|...+.+++|+|+|++|++++.. +..|.+||+.+++..
T Consensus 272 ~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-- 348 (415)
T 2hqs_A 272 PTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-- 348 (415)
T ss_dssp EEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE--
T ss_pred eEECCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE--
Confidence 99999999888765 2 789999988864 4556677889999999999999988743 258999999987643
Q ss_pred eeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCC---cEEEEECCCcc
Q 007234 238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG---VCYIWYGQNIE 285 (612)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg---~i~iwd~~~~~ 285 (612)
.+..+. .+....|+ |+|++|++++.++ .|++||+..+.
T Consensus 349 ----~l~~~~-~~~~~~~s-----pdg~~l~~~s~~~~~~~l~~~d~~g~~ 389 (415)
T 2hqs_A 349 ----VLSSTF-LDETPSLA-----PNGTMVIYSSSQGMGSVLNLVSTDGRF 389 (415)
T ss_dssp ----ECCCSS-SCEEEEEC-----TTSSEEEEEEEETTEEEEEEEETTSCC
T ss_pred ----EecCCC-CcCCeEEc-----CCCCEEEEEEcCCCccEEEEEECCCCc
Confidence 222222 45667777 9999999998877 79999987543
No 135
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.88 E-value=1.9e-21 Score=218.13 Aligned_cols=338 Identities=9% Similarity=0.029 Sum_probs=206.6
Q ss_pred ccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEE-EEeeccCCccccccccccccc-cccccceeEEEeeeccccccc
Q 007234 5 NIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQ-TEFADIASTETTSLYGNRLER-EHLSVDYTCMKWLSVDRKKKR 82 (612)
Q Consensus 5 ~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~s~~~~~-~~~~~~~~~~~w~~~~~~~~~ 82 (612)
.+..+ .|+ |+.+++++.|| | +||+.+|+.+ ..+..+.... ..++..... ........++.|.+.
T Consensus 27 ~~~~~--~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~--~~l~~~~~~~~~~~~~v~~~~~spd------ 92 (706)
T 2z3z_A 27 YVVGL--QWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLN--ALMPEGCKFQTTDAFPSFRTLDAGR------ 92 (706)
T ss_dssp -CTTC--EEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHH--TTC-----------CCCEEEEETTT------
T ss_pred cCCCC--cCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhh--hhccchhccccccccCceeEEECCC------
Confidence 34455 788 66777788888 8 9999999873 3332221100 000000000 000123556666553
Q ss_pred ccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCC-----CceeEEEec
Q 007234 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT-----GSLLGKFRA 157 (612)
Q Consensus 83 ~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~-----~~~~~~~~~ 157 (612)
..++.+ .++.|++||+.+++..... .+...+.+++|+|||+.|+++ .|+.|++||+.+ ++.......
T Consensus 93 ----~~~~~~-~~~~i~~~d~~~~~~~~l~--~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~ 164 (706)
T 2z3z_A 93 ----GLVVLF-TQGGLVGFDMLARKVTYLF--DTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTID 164 (706)
T ss_dssp ----TEEEEE-ETTEEEEEETTTTEEEEEE--CCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSC
T ss_pred ----CeEEEE-ECCEEEEEECCCCceEEcc--CCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccC
Confidence 223443 4599999999998775433 466788999999999999885 689999999998 776554443
Q ss_pred CCCC--------------eeEEEECCCCCEEEEeC-----------------------------------CeEEEEEcCC
Q 007234 158 STKG--------------ISCMAVSSDGKMLATAA-----------------------------------GQLKTFNCSD 188 (612)
Q Consensus 158 ~~~~--------------v~~l~~spdg~~l~~~~-----------------------------------g~i~lwd~~~ 188 (612)
+... +.+++|+|||++|++++ ..|++||+.+
T Consensus 165 ~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~ 244 (706)
T 2z3z_A 165 GTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLAT 244 (706)
T ss_dssp CBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTT
T ss_pred CCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCC
Confidence 3332 48999999999998874 5799999999
Q ss_pred CeeEEEEe--cCCCCEEEEEEeeCCcEEEEEEcCCC-----eEEEEEcCCCccccceeeEeecCCce--eEEeEEecCCc
Q 007234 189 HKKMQKFS--GHPGAVRFMTFSDNGKYVLSSAVGER-----YIALWRTDGVKKQSASCVLAMEHPAV--FMDCRCIDNGG 259 (612)
Q Consensus 189 ~~~~~~~~--~h~~~v~~l~~sp~~~~l~s~s~~d~-----~i~vwd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 259 (612)
++...... .|...+.+++|+|||+++++++ .++ .|.+||+.+++... .+....+... .+..+.|+
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~-~~~~~~~~~v~~~d~~~g~~~~--~~~~~~~~~~~~~~~~~~~s--- 318 (706)
T 2z3z_A 245 GKTVYLQTGEPKEKFLTNLSWSPDENILYVAE-VNRAQNECKVNAYDAETGRFVR--TLFVETDKHYVEPLHPLTFL--- 318 (706)
T ss_dssp TEEEECCCCSCTTCEEEEEEECTTSSEEEEEE-ECTTSCEEEEEEEETTTCCEEE--EEEEEECSSCCCCCSCCEEC---
T ss_pred CceEeeccCCCCceeEeeEEEECCCCEEEEEE-eCCCCCeeEEEEEECCCCceee--EEEEccCCCeECccCCceee---
Confidence 87654432 4667899999999999998876 455 89999999873221 1222112111 12345666
Q ss_pred cCC--CCcEEEEEecCCcEEEEECC-CcceecccCCceeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCC
Q 007234 260 VDD--AGLYVLAISETGVCYIWYGQ-NIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGL 336 (612)
Q Consensus 260 ~~~--~~~~l~t~s~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~ 336 (612)
| ||+++++++.||.+++|.+. ++..+.........+.....++|+++ .++.++.+.. .....++..+..
T Consensus 319 --p~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~----~l~~~~~~~~--~~~~~l~~~d~~ 390 (706)
T 2z3z_A 319 --PGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGT----RLYFESTEAS--PLERHFYCIDIK 390 (706)
T ss_dssp --TTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSS----EEEEEESSSC--TTCBEEEEEETT
T ss_pred --cCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCC----EEEEEecCCC--CceEEEEEEEcC
Confidence 8 99999999999999999876 45544444333222222123678877 4444333210 001233333321
Q ss_pred ccCceEEEeeccCCCeEEEEecCCCceEeccccce---eeecceeeec
Q 007234 337 LLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLL---KSKRGRYVQN 381 (612)
Q Consensus 337 ~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d---~~~~~w~~~~ 381 (612)
.. ..+.+ .|...+.+++|||||++++++++.+ ..+.+|+...
T Consensus 391 ~~--~~~~l-~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~ 435 (706)
T 2z3z_A 391 GG--KTKDL-TPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGK 435 (706)
T ss_dssp CC--CCEES-CCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSS
T ss_pred CC--Cceec-cCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCC
Confidence 11 11222 3666789999999999984554433 4588888643
No 136
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.88 E-value=1.4e-20 Score=190.36 Aligned_cols=265 Identities=12% Similarity=0.064 Sum_probs=194.8
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEEEeeccCC--ccccccccccccccccccceeEEEeeecccccccccCCcEE-EEEEC
Q 007234 18 DYFAICSGDARIKIWDTLKGQVQTEFADIAS--TETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL-VLGTG 94 (612)
Q Consensus 18 ~~las~s~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l-~~gs~ 94 (612)
++|++++.+++|.+||..+++.+..+..... .+..+.|+++ ++.+ +++..
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~d---------------------------g~~l~v~~~~ 54 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPG---------------------------GRIAYATVNK 54 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTT---------------------------SSEEEEEETT
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCC---------------------------CCEEEEEeCC
Confidence 4789999999999999999998887753221 2333333333 5444 55556
Q ss_pred CCcEEEEEcCCCeEEEEeccCC----CCCeEEEEEecCCCEEEEEe------------cCCcEEEEECCCCceeEEEecC
Q 007234 95 GGDVLALAVSAGQLKWRLSDCH----PGGVSAISFATHGSCIYSAG------------ADGMVCEIDPLTGSLLGKFRAS 158 (612)
Q Consensus 95 ~g~I~vwd~~~~~~~~~~~~~h----~~~V~~l~~sp~~~~l~s~s------------~dg~v~iwd~~~~~~~~~~~~~ 158 (612)
++.|.+||+.+++.+..+..++ ...+.+++|+|+|+.+++++ .++.|.+||+.+++.+..+..
T Consensus 55 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~- 133 (337)
T 1pby_B 55 SESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA- 133 (337)
T ss_dssp TTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-
T ss_pred CCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-
Confidence 7889999999999876664333 22678899999999998886 579999999999988887775
Q ss_pred CCCeeEEEECCCCCEEEEeCCeEEEEEcCCCeeEEEEecCC--CCEEEEEEeeCCcEEEEEEcCCC--------------
Q 007234 159 TKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGHP--GAVRFMTFSDNGKYVLSSAVGER-------------- 222 (612)
Q Consensus 159 ~~~v~~l~~spdg~~l~~~~g~i~lwd~~~~~~~~~~~~h~--~~v~~l~~sp~~~~l~s~s~~d~-------------- 222 (612)
...+.+++|+|+|++++++++.|++||+.+++....+..+. .+ +.|+|++++++.++..++
T Consensus 134 ~~~~~~~~~s~dg~~l~~~~~~i~~~d~~~~~~~~~~~~~~~~~~---~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~ 210 (337)
T 1pby_B 134 PRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAE---TYAQPDVLAVWNQHESSGVMATPFYTARKDID 210 (337)
T ss_dssp CSSCCCEEECTTSSCEEEESSSEEEEETTTTEEEEEECSTTTTTT---TBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSC
T ss_pred CCCcceeEECCCCCEEEEeCCeEEEEECCCCcEeeeeeccccCCC---ceeCCCccEEeeeccCCCceeeeeeccccccc
Confidence 45678899999999999889999999999999888776544 33 378999987766543333
Q ss_pred ---------eEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCc
Q 007234 223 ---------YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKAT 293 (612)
Q Consensus 223 ---------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~ 293 (612)
.|.+||+.+++.. .............+.++ |+|++++++ ++.|.+||+.+++.+...
T Consensus 211 ~~~~~~~~~~v~~~d~~~~~~~----~~~~~~~~~~~~~~~~s-----~dg~~l~~~--~~~v~~~d~~~~~~~~~~--- 276 (337)
T 1pby_B 211 PADPTAYRTGLLTMDLETGEMA----MREVRIMDVFYFSTAVN-----PAKTRAFGA--YNVLESFDLEKNASIKRV--- 276 (337)
T ss_dssp TTSGGGEEEEEEEEETTTCCEE----EEEEEECSSCEEEEEEC-----TTSSEEEEE--ESEEEEEETTTTEEEEEE---
T ss_pred cccccccccceEEEeCCCCCce----EeecCCCCCceeeEEEC-----CCCCEEEEe--CCeEEEEECCCCcCccee---
Confidence 4689999887643 12222222334456776 999999888 799999998776543210
Q ss_pred eeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceee
Q 007234 294 KILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKS 373 (612)
Q Consensus 294 ~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~ 373 (612)
.. ...+.+++|+|||++| ++++.++.
T Consensus 277 ----------------------------------------------------~~-~~~~~~~~~s~dg~~l-~~~~~~~~ 302 (337)
T 1pby_B 277 ----------------------------------------------------PL-PHSYYSVNVSTDGSTV-WLGGALGD 302 (337)
T ss_dssp ----------------------------------------------------EC-SSCCCEEEECTTSCEE-EEESBSSE
T ss_pred ----------------------------------------------------cC-CCceeeEEECCCCCEE-EEEcCCCc
Confidence 00 0145678899999988 66677999
Q ss_pred ecceeeec
Q 007234 374 KRGRYVQN 381 (612)
Q Consensus 374 ~~~w~~~~ 381 (612)
+++|+...
T Consensus 303 i~v~d~~~ 310 (337)
T 1pby_B 303 LAAYDAET 310 (337)
T ss_dssp EEEEETTT
T ss_pred EEEEECcC
Confidence 99998743
No 137
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.87 E-value=5e-20 Score=186.73 Aligned_cols=272 Identities=14% Similarity=0.161 Sum_probs=178.7
Q ss_pred EEEEEeCCCcEEEEECC-CCc--EEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEECC
Q 007234 19 YFAICSGDARIKIWDTL-KGQ--VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGG 95 (612)
Q Consensus 19 ~las~s~dg~i~iwd~~-~~~--~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~ 95 (612)
.+++++.|+.|++||+. +++ .+..+. +...+.. +.|.+. ++++++++.+
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~------------------~~~spd---------g~~l~~~~~~ 58 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVVD-VPGQVQP------------------MVVSPD---------KRYLYVGVRP 58 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSCCCC------------------EEECTT---------SSEEEEEETT
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeEe-cCCCCce------------------EEECCC---------CCEEEEeecC
Confidence 34444779999999985 343 233332 3333333 444332 7778888776
Q ss_pred -CcEEEEEcC--CCeE--EEEeccCCCCCeEEEEEecCCCEEEEEec-CCcEEEEECC---CCceeEEEecCCCCeeEEE
Q 007234 96 -GDVLALAVS--AGQL--KWRLSDCHPGGVSAISFATHGSCIYSAGA-DGMVCEIDPL---TGSLLGKFRASTKGISCMA 166 (612)
Q Consensus 96 -g~I~vwd~~--~~~~--~~~~~~~h~~~V~~l~~sp~~~~l~s~s~-dg~v~iwd~~---~~~~~~~~~~~~~~v~~l~ 166 (612)
+.|.+|++. ++.. +..+ ..+ ..+.+++|+|+++++++++. ++.|.+||+. .++....+.. ...+.+++
T Consensus 59 ~~~v~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~ 135 (343)
T 1ri6_A 59 EFRVLAYRIAPDDGALTFAAES-ALP-GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSAN 135 (343)
T ss_dssp TTEEEEEEECTTTCCEEEEEEE-ECS-SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC-CTTBCCCE
T ss_pred CCeEEEEEecCCCCceeecccc-ccC-CCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccC-CCCceEEE
Confidence 899999998 5553 2333 223 37899999999998877664 8899999994 3344445543 34688999
Q ss_pred ECCCCCEEEEeC---CeEEEEEcCC-CeeEE----EEec-CCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCC--Cccc
Q 007234 167 VSSDGKMLATAA---GQLKTFNCSD-HKKMQ----KFSG-HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG--VKKQ 235 (612)
Q Consensus 167 ~spdg~~l~~~~---g~i~lwd~~~-~~~~~----~~~~-h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~--~~~~ 235 (612)
|+|+|+++++++ +.|++||+.+ ++... .+.. ....+..++|+|+++++++++..++.|.+|++.. +...
T Consensus 136 ~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~ 215 (343)
T 1ri6_A 136 ISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIE 215 (343)
T ss_dssp ECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCE
T ss_pred ECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEE
Confidence 999999887765 8999999987 64432 2333 3347889999999998877765789999999964 3221
Q ss_pred cceeeEeecCC---ceeEEeEEecCCccCCCCcEEEEEe-cCCcEEEEECCC--cceecccCCceeEeecccccCCCCcc
Q 007234 236 SASCVLAMEHP---AVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQN--IEELRNTKATKILSSSEDVNSKSQKS 309 (612)
Q Consensus 236 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~t~s-~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~s~~~~~ 309 (612)
........... ......+.|+ |+|++|+++. .++.|.+||+.. +....
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~i~~s-----~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~--------------------- 269 (343)
T 1ri6_A 216 CVQTLDMMPENFSDTRWAADIHIT-----PDGRHLYACDRTASLITVFSVSEDGSVLSK--------------------- 269 (343)
T ss_dssp EEEEEECSCTTCCSCCCEEEEEEC-----TTSSEEEEEETTTTEEEEEEECTTSCCEEE---------------------
T ss_pred EEeeccccCccccccCCccceEEC-----CCCCEEEEEecCCCEEEEEEEcCCCCceEE---------------------
Confidence 00011111111 1233456676 9998887554 689999999762 11000
Q ss_pred cchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceeee
Q 007234 310 ATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (612)
Q Consensus 310 ~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~~ 380 (612)
...+..+. .+..++|+|||++|.+++..++.+.+|++.
T Consensus 270 --------------------------------~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 270 --------------------------------EGFQPTET-QPRGFNVDHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp --------------------------------EEEEECSS-SCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred --------------------------------eeeecCCC-ccceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 00111122 266788999999885666578999999764
No 138
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.87 E-value=2.7e-20 Score=183.98 Aligned_cols=221 Identities=11% Similarity=0.058 Sum_probs=158.8
Q ss_pred EeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEECCCcEEEEE
Q 007234 23 CSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALA 102 (612)
Q Consensus 23 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd 102 (612)
++.|++|++||+.+++... +..|...+.++.|+++ ++++++++ ++.|.+||
T Consensus 18 ~~~~~~i~~~d~~~~~~~~-~~~~~~~v~~~~~spd---------------------------g~~l~~~~-~~~i~~~d 68 (297)
T 2ojh_A 18 GSMRSSIEIFNIRTRKMRV-VWQTPELFEAPNWSPD---------------------------GKYLLLNS-EGLLYRLS 68 (297)
T ss_dssp CCCCEEEEEEETTTTEEEE-EEEESSCCEEEEECTT---------------------------SSEEEEEE-TTEEEEEE
T ss_pred CCcceeEEEEeCCCCceee-eccCCcceEeeEECCC---------------------------CCEEEEEc-CCeEEEEe
Confidence 3568999999999988764 3345555555555544 77788876 78999999
Q ss_pred cCC-CeEEEEeccCC-CCCeEEEEEecCCCEEEEEe--cCCc--EEEEECCCCceeEEEecCCCCeeEEEECCCCCEEE-
Q 007234 103 VSA-GQLKWRLSDCH-PGGVSAISFATHGSCIYSAG--ADGM--VCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLA- 175 (612)
Q Consensus 103 ~~~-~~~~~~~~~~h-~~~V~~l~~sp~~~~l~s~s--~dg~--v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~- 175 (612)
+.+ ++..... ..| ...+.+++|+|+++.|++++ .++. |..|+..+++ ...+..+ ..+.+++|+|+|+.++
T Consensus 69 ~~~~~~~~~~~-~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~ 145 (297)
T 2ojh_A 69 LAGDPSPEKVD-TGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTY 145 (297)
T ss_dssp SSSCCSCEECC-CTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEEE
T ss_pred CCCCCCceEec-cccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCEEEE
Confidence 999 7776444 344 47889999999999999998 3344 4445555554 3444433 3589999999999887
Q ss_pred EeC--CeEEEEEc--CCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEE
Q 007234 176 TAA--GQLKTFNC--SDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMD 251 (612)
Q Consensus 176 ~~~--g~i~lwd~--~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 251 (612)
++. +.+++|++ .++ ....+..|...+.++.|+|+|+++++++..++.+++|++...... ...+..+...+.
T Consensus 146 ~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~~~ 220 (297)
T 2ojh_A 146 CGIRDQVFDIYSMDIDSG-VETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSS----VERITDSAYGDW 220 (297)
T ss_dssp EEEETTEEEEEEEETTTC-CEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC----EEECCCCSEEEE
T ss_pred EECCCCceEEEEEECCCC-cceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCC----cEEEecCCcccC
Confidence 443 78888875 344 345677788899999999999988877655889999998632211 223334445566
Q ss_pred eEEecCCccCCCCcEEEEEecC-----------CcEEEEECCCcc
Q 007234 252 CRCIDNGGVDDAGLYVLAISET-----------GVCYIWYGQNIE 285 (612)
Q Consensus 252 ~~~~~~~~~~~~~~~l~t~s~d-----------g~i~iwd~~~~~ 285 (612)
.+.|+ |+|++|++++.+ +.|++||+.+++
T Consensus 221 ~~~~s-----~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~ 260 (297)
T 2ojh_A 221 FPHPS-----PSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGN 260 (297)
T ss_dssp EEEEC-----TTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCS
T ss_pred CeEEC-----CCCCEEEEEEcCCCCCcccccCceEEEEEecCCCC
Confidence 67787 999999988876 468889876653
No 139
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.86 E-value=1.2e-19 Score=183.35 Aligned_cols=238 Identities=9% Similarity=0.039 Sum_probs=170.8
Q ss_pred EEEEcCCCCEEEEEeC-CCcEEEEECCCCcE-EEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCc
Q 007234 10 LTSFSPALDYFAICSG-DARIKIWDTLKGQV-QTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (612)
Q Consensus 10 ~~~fspdg~~las~s~-dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (612)
+++|+|||+++++++. ++.|.+||..+++. ...+..+.....++.|+++ ++
T Consensus 44 ~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~d---------------------------g~ 96 (331)
T 3u4y_A 44 DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPD---------------------------DQ 96 (331)
T ss_dssp EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTT---------------------------SS
T ss_pred eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCC---------------------------CC
Confidence 5599999997776665 89999999999987 6666544433332444444 77
Q ss_pred EEEEEECCC---cEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEE-ecCCc-EEEEECCCCceeE----EEecC
Q 007234 88 LLVLGTGGG---DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSA-GADGM-VCEIDPLTGSLLG----KFRAS 158 (612)
Q Consensus 88 ~l~~gs~~g---~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~-s~dg~-v~iwd~~~~~~~~----~~~~~ 158 (612)
+++++..++ .|.+||+.+++.+..+. +.....+++|+|+|++++++ ..++. |.+|++.....+. .....
T Consensus 97 ~l~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~ 174 (331)
T 3u4y_A 97 FAVTVTGLNHPFNMQSYSFLKNKFISTIP--IPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISG 174 (331)
T ss_dssp EEEECCCSSSSCEEEEEETTTTEEEEEEE--CCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECS
T ss_pred EEEEecCCCCcccEEEEECCCCCeEEEEE--CCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccC
Confidence 777555553 89999999999887663 34567999999999866655 45588 9999987543321 22233
Q ss_pred CCCeeEEEECCCCCEEEEeC---CeEEEEEcCCCee---EEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCC
Q 007234 159 TKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKK---MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (612)
Q Consensus 159 ~~~v~~l~~spdg~~l~~~~---g~i~lwd~~~~~~---~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~ 232 (612)
...+.+++|+|+|+++++++ +.|++||+.+++. +..+..+ ..+..++|+|+|++++.++..++.|.+||+.++
T Consensus 175 ~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~ 253 (331)
T 3u4y_A 175 GTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN-NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSG 253 (331)
T ss_dssp SSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS-SCCCCEEECTTSSEEEEECSSEEEEEEEETTTT
T ss_pred CCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC-CCCceEEECCCCCEEEEEEcCCCEEEEEECCCC
Confidence 45689999999999766554 7999999999887 7777754 566889999999988777656788999999887
Q ss_pred ccccceeeEeecCC----c---eeEEeEEecCCccCCCCcEEEEEec-CCcEEEEECCCcc
Q 007234 233 KKQSASCVLAMEHP----A---VFMDCRCIDNGGVDDAGLYVLAISE-TGVCYIWYGQNIE 285 (612)
Q Consensus 233 ~~~~~~~~~~~~~~----~---~~~~~~~~~~~~~~~~~~~l~t~s~-dg~i~iwd~~~~~ 285 (612)
+.. .+...... . .....+.|+ |+|++|++++. ++.|.+||+....
T Consensus 254 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~s-----pdg~~l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 254 TLS---FVKSFGHGLLIDPRPLFGANQMALN-----KTETKLFISANISRELKVFTISGKV 306 (331)
T ss_dssp EEE---EEEEEECCCCCCCGGGTTCCCEEEC-----TTSSEEEEEETTTTEEEEEETTSCE
T ss_pred cee---eecccccccccCCCCcccccceEEC-----CCCCEEEEecCCCCcEEEEEecCCc
Confidence 652 11111111 1 111235666 99998877665 5699999987654
No 140
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.86 E-value=2.8e-19 Score=181.16 Aligned_cols=240 Identities=10% Similarity=0.138 Sum_probs=164.6
Q ss_pred ccceeEEEEcCCCCEEEEEeCC-CcEEEEECC--CCcEE--EEeeccCCccccccccccccccccccceeEEEeeecccc
Q 007234 5 NIRDILTSFSPALDYFAICSGD-ARIKIWDTL--KGQVQ--TEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK 79 (612)
Q Consensus 5 ~V~~l~~~fspdg~~las~s~d-g~i~iwd~~--~~~~~--~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~ 79 (612)
.+..+ +|+|+|++|++++.+ +.|.+|++. +++.. ..+..+. . ...+.|.+.
T Consensus 39 ~~~~~--~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~------------------~~~~~~s~d--- 94 (343)
T 1ri6_A 39 QVQPM--VVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-S------------------LTHISTDHQ--- 94 (343)
T ss_dssp CCCCE--EECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-C------------------CSEEEECTT---
T ss_pred CCceE--EECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-C------------------CcEEEEcCC---
Confidence 45444 999999999988886 999999997 55533 3333211 2 234444443
Q ss_pred cccccCCcEEEEEEC-CCcEEEEEcC---CCeEEEEeccCCCCCeEEEEEecCCCEEEEEe-cCCcEEEEECCC-CceeE
Q 007234 80 KKRKLGSSLLVLGTG-GGDVLALAVS---AGQLKWRLSDCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPLT-GSLLG 153 (612)
Q Consensus 80 ~~~~~~~~~l~~gs~-~g~I~vwd~~---~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s-~dg~v~iwd~~~-~~~~~ 153 (612)
++.+++++. ++.|.+||+. .+.....+ . ....+.+++|+|+|+.+++++ .++.|++||+.+ ++...
T Consensus 95 ------g~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~ 166 (343)
T 1ri6_A 95 ------GQFVFVGSYNAGNVSVTRLEDGLPVGVVDVV-E-GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVA 166 (343)
T ss_dssp ------SSEEEEEETTTTEEEEEEEETTEEEEEEEEE-C-CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEE
T ss_pred ------CCEEEEEecCCCeEEEEECCCCccccccccc-c-CCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceee
Confidence 666666654 7889999994 33344333 2 334689999999999888887 899999999987 65432
Q ss_pred ----EEecC-CCCeeEEEECCCCCEEEEeC---CeEEEEEcCC--Cee--EEEEe----cC--CCCEEEEEEeeCCcEEE
Q 007234 154 ----KFRAS-TKGISCMAVSSDGKMLATAA---GQLKTFNCSD--HKK--MQKFS----GH--PGAVRFMTFSDNGKYVL 215 (612)
Q Consensus 154 ----~~~~~-~~~v~~l~~spdg~~l~~~~---g~i~lwd~~~--~~~--~~~~~----~h--~~~v~~l~~sp~~~~l~ 215 (612)
.+..+ ...+.+++|+|+|+++++++ +.|++||+.. ++. ...+. ++ ...+..++|+|+|++++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~ 246 (343)
T 1ri6_A 167 QDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLY 246 (343)
T ss_dssp EEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEE
T ss_pred ecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEE
Confidence 23332 34788999999999776543 8999999953 432 33332 11 23567899999999888
Q ss_pred EEEcCCCeEEEEEcCC--CccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEe-cCCcEEEEEC--CCcc
Q 007234 216 SSAVGERYIALWRTDG--VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYG--QNIE 285 (612)
Q Consensus 216 s~s~~d~~i~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s-~dg~i~iwd~--~~~~ 285 (612)
+++..++.|.+|++.. +... .+........ +..+.|+ |+|++|++++ .++.|.+|++ .+++
T Consensus 247 v~~~~~~~i~v~d~~~~~~~~~---~~~~~~~~~~-~~~~~~s-----~dg~~l~~~~~~~~~v~v~~~d~~~g~ 312 (343)
T 1ri6_A 247 ACDRTASLITVFSVSEDGSVLS---KEGFQPTETQ-PRGFNVD-----HSGKYLIAAGQKSHHISVYEIVGEQGL 312 (343)
T ss_dssp EEETTTTEEEEEEECTTSCCEE---EEEEEECSSS-CCCEEEC-----TTSSEEEEECTTTCEEEEEEEETTTTE
T ss_pred EEecCCCEEEEEEEcCCCCceE---EeeeecCCCc-cceEEEC-----CCCCEEEEecCCCCeEEEEEEcCCCce
Confidence 6665789999999983 2221 2223333333 4566776 9999988887 5899999954 4553
No 141
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.86 E-value=2.3e-20 Score=218.23 Aligned_cols=267 Identities=11% Similarity=-0.031 Sum_probs=186.7
Q ss_pred cEEEEEECCCcEEEEEcCC-CeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEec--------
Q 007234 87 SLLVLGTGGGDVLALAVSA-GQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA-------- 157 (612)
Q Consensus 87 ~~l~~gs~~g~I~vwd~~~-~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~-------- 157 (612)
.++++++.+|.+.||.+.. +.....+ ..|. .+...+|+|+|+.++.+ .++.|++||+... .+..+..
T Consensus 215 ~l~~~~~~dg~~~l~~~~~~g~~~~~l-~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~-~l~~l~~~~~~~~~~ 290 (1045)
T 1k32_A 215 RIYFITDIDGFGQIYSTDLDGKDLRKH-TSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNPDTE-KIEKIEIGDLESPED 290 (1045)
T ss_dssp EEEEEECTTSSCEEEEEETTSCSCEEC-CCCC-SSCEEEEEESSSCEEEE-ETTEEEEECTTTC-CEEECCCCCCCBCCS
T ss_pred EEEEEEeccCceEEEEEeCCCCcceEe-cCCC-CcceeeEcCCCCEEEEE-eCCEEEEecCCce-EeeeeccCccccccc
Confidence 4556677778888887653 3333333 3344 46778999999988887 5899999998544 3345544
Q ss_pred ---CCCCeeEEEEC-CCCCEEEEeC-CeEEEEEcCCCeeEEEEecCCC-CEEEEEEeeCCcEEEEEEcCCCeEE-EEEcC
Q 007234 158 ---STKGISCMAVS-SDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPG-AVRFMTFSDNGKYVLSSAVGERYIA-LWRTD 230 (612)
Q Consensus 158 ---~~~~v~~l~~s-pdg~~l~~~~-g~i~lwd~~~~~~~~~~~~h~~-~v~~l~~sp~~~~l~s~s~~d~~i~-vwd~~ 230 (612)
+...+.+++|+ |||+.+++++ +.|++|++.+++.. .+..|.. .+..++|+ ||+.+++++ .+..+. +|++.
T Consensus 291 ~~~~~~~v~~~~~S~pdG~~la~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~s-dg~~l~~~s-~~~~l~~~~d~~ 367 (1045)
T 1k32_A 291 RIISIPSKFAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVL-KVPEPLRIRYVRRGGD-TKVAFIHGT-REGDFLGIYDYR 367 (1045)
T ss_dssp EEEECGGGGEEEEEECGGGCEEEEETTEEEEECTTSSBEE-ECSCCSCEEEEEECSS-SEEEEEEEE-TTEEEEEEEETT
T ss_pred ccccccccceeeecCCCCCEEEEEEcCEEEEEcCCCCceE-EccCCCcceEEeeeEc-CCCeEEEEE-CCCceEEEEECC
Confidence 22368999999 9999998887 99999999887654 4667777 89999999 999999987 577888 88988
Q ss_pred CCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCccc
Q 007234 231 GVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSA 310 (612)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 310 (612)
++... .+..+...+..+.|+ |||++|++++.++.|++||+.+++...........+.. ..++|+++
T Consensus 368 ~~~~~------~l~~~~~~~~~~~~S-----pDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~-~~~SpDG~-- 433 (1045)
T 1k32_A 368 TGKAE------KFEENLGNVFAMGVD-----RNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITD-FTISDNSR-- 433 (1045)
T ss_dssp TCCEE------ECCCCCCSEEEEEEC-----TTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCC-EEECTTSC--
T ss_pred CCCce------EecCCccceeeeEEC-----CCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccc-eEECCCCC--
Confidence 76532 122333445667787 99999999999999999999988765433222211122 23788988
Q ss_pred chhhhcccccc--e-ecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceee
Q 007234 311 TAAIFAAKLQD--I-VKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (612)
Q Consensus 311 ~~~i~~~~~d~--~-~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~ 379 (612)
.++.++.++ . ....+..+.+.+-.. .....+..|...+..++|||||++| +.++.++..+.|+.
T Consensus 434 --~la~~~~~~~~~~~~~~~~~i~l~d~~~--g~~~~l~~~~~~~~~~~~spdG~~l-~~~s~~~~~~~~~~ 500 (1045)
T 1k32_A 434 --FIAYGFPLKHGETDGYVMQAIHVYDMEG--RKIFAATTENSHDYAPAFDADSKNL-YYLSYRSLDPSPDR 500 (1045)
T ss_dssp --EEEEEEEECSSTTCSCCEEEEEEEETTT--TEEEECSCSSSBEEEEEECTTSCEE-EEEESCCCCCEECS
T ss_pred --eEEEEecCccccccCCCCCeEEEEECCC--CcEEEeeCCCcccCCceEcCCCCEE-EEEecccCCcCcch
Confidence 666665432 0 000123444443221 1245667788789999999999999 77777777777764
No 142
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.85 E-value=1.1e-19 Score=212.56 Aligned_cols=241 Identities=12% Similarity=0.021 Sum_probs=180.0
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEee-ecccccccccCCcE
Q 007234 10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWL-SVDRKKKRKLGSSL 88 (612)
Q Consensus 10 ~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~-~~~~~~~~~~~~~~ 88 (612)
+.+|||||++||++. ++.|.+||....... .+..+..... ..+. ........+.|. +. ++.
T Consensus 249 ~~~~SpDG~~la~~~-~~~i~~~d~~~~~l~-~l~~~~~~~~-~~~~------~~~~~v~~~~~S~pd---------G~~ 310 (1045)
T 1k32_A 249 PRHLNTDGRRILFSK-GGSIYIFNPDTEKIE-KIEIGDLESP-EDRI------ISIPSKFAEDFSPLD---------GDL 310 (1045)
T ss_dssp EEEEEESSSCEEEEE-TTEEEEECTTTCCEE-ECCCCCCCBC-CSEE------EECGGGGEEEEEECG---------GGC
T ss_pred eeeEcCCCCEEEEEe-CCEEEEecCCceEee-eeccCccccc-cccc------ccccccceeeecCCC---------CCE
Confidence 349999999999885 889999999554443 4443211000 0000 001234566776 44 666
Q ss_pred EEEEECCCcEEEEEcCCCeEEEEeccCCCC-CeEEEEEecCCCEEEEEecCCcEE-EEECCCCceeEEEecCCCCeeEEE
Q 007234 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPG-GVSAISFATHGSCIYSAGADGMVC-EIDPLTGSLLGKFRASTKGISCMA 166 (612)
Q Consensus 89 l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~-~V~~l~~sp~~~~l~s~s~dg~v~-iwd~~~~~~~~~~~~~~~~v~~l~ 166 (612)
+++++ ++.|.+|++.++... .+ ..|.. .+.+++|+ +|+.|++++.++.+. +||+.+++... +..+...+.+++
T Consensus 311 la~~~-~~~i~~~~~~~~~~~-~~-~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~-l~~~~~~~~~~~ 385 (1045)
T 1k32_A 311 IAFVS-RGQAFIQDVSGTYVL-KV-PEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEK-FEENLGNVFAMG 385 (1045)
T ss_dssp EEEEE-TTEEEEECTTSSBEE-EC-SCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEE-CCCCCCSEEEEE
T ss_pred EEEEE-cCEEEEEcCCCCceE-Ec-cCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceE-ecCCccceeeeE
Confidence 77777 889999999988765 33 45777 89999999 999999999888898 99998776543 446777899999
Q ss_pred ECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCC---------CeEEEEEcCCCccc
Q 007234 167 VSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE---------RYIALWRTDGVKKQ 235 (612)
Q Consensus 167 ~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d---------~~i~vwd~~~~~~~ 235 (612)
|+|||++|++++ +.|++||+.+++....+.+|...+.+++|+|||++|++++..+ +.|++||+.+++..
T Consensus 386 ~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~ 465 (1045)
T 1k32_A 386 VDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIF 465 (1045)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEE
T ss_pred ECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEE
Confidence 999999999887 7999999999998888878999999999999999998876322 48999999887522
Q ss_pred cceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCc
Q 007234 236 SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (612)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~ 284 (612)
.+..+........|+ |||++|++++.++....|+....
T Consensus 466 ------~l~~~~~~~~~~~~s-----pdG~~l~~~s~~~~~~~~~~~~~ 503 (1045)
T 1k32_A 466 ------AATTENSHDYAPAFD-----ADSKNLYYLSYRSLDPSPDRVVL 503 (1045)
T ss_dssp ------ECSCSSSBEEEEEEC-----TTSCEEEEEESCCCCCEECSSSS
T ss_pred ------EeeCCCcccCCceEc-----CCCCEEEEEecccCCcCcchhcc
Confidence 222333334456677 99999999999888888876543
No 143
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.85 E-value=1.1e-19 Score=179.56 Aligned_cols=231 Identities=11% Similarity=0.070 Sum_probs=164.0
Q ss_pred CcccceeEEEEcCCCCEEEEEeCCCcEEEEECCC-CcEEEEeeccC-CccccccccccccccccccceeEEEeeeccccc
Q 007234 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLK-GQVQTEFADIA-STETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (612)
Q Consensus 3 s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~-~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~ 80 (612)
...|..+ +|+|||++|++++ ++.|.+||+.+ ++.......+. ..+.++.|+++
T Consensus 41 ~~~v~~~--~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spd---------------------- 95 (297)
T 2ojh_A 41 PELFEAP--NWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPD---------------------- 95 (297)
T ss_dssp SSCCEEE--EECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTT----------------------
T ss_pred CcceEee--EECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCC----------------------
Confidence 3456544 9999999999987 78999999999 87766554432 33333444443
Q ss_pred ccccCCcEEEEEEC--CCc--EEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEE-EEecCCcEEEEECCC-CceeEE
Q 007234 81 KRKLGSSLLVLGTG--GGD--VLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIY-SAGADGMVCEIDPLT-GSLLGK 154 (612)
Q Consensus 81 ~~~~~~~~l~~gs~--~g~--I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~-s~s~dg~v~iwd~~~-~~~~~~ 154 (612)
++.+++++. ++. |..|++.++... .+ . +...+..++|+|+++.|+ +++.|+.+++|++.. +.....
T Consensus 96 -----g~~l~~~~~~~~~~~~l~~~~~~~~~~~-~~-~-~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~ 167 (297)
T 2ojh_A 96 -----GALYAISDKVEFGKSAIYLLPSTGGTPR-LM-T-KNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETR 167 (297)
T ss_dssp -----SSEEEEEECTTTSSCEEEEEETTCCCCE-EC-C-SSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEE
T ss_pred -----CCEEEEEEeCCCCcceEEEEECCCCceE-Ee-e-cCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceE
Confidence 778888883 344 555555655532 33 2 233589999999999877 778899999998532 233455
Q ss_pred EecCCCCeeEEEECCCCCEEEEeC---CeEEEEEcC-CCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCC---------
Q 007234 155 FRASTKGISCMAVSSDGKMLATAA---GQLKTFNCS-DHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE--------- 221 (612)
Q Consensus 155 ~~~~~~~v~~l~~spdg~~l~~~~---g~i~lwd~~-~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d--------- 221 (612)
+..+...+.+++|+|+|+++++++ +.+++|++. .+..+..+..|...+.++.|+|+|++|++++..+
T Consensus 168 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~ 247 (297)
T 2ojh_A 168 LTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDL 247 (297)
T ss_dssp CCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSE
T ss_pred cccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccC
Confidence 666777899999999999887653 688888876 4556777888888899999999999998877421
Q ss_pred -CeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCC
Q 007234 222 -RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG 274 (612)
Q Consensus 222 -~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg 274 (612)
+.|.+||+.+++.. .+.....+...+..+.|+ |++++|++++.+.
T Consensus 248 ~~~l~~~d~~~~~~~---~~~~~~~~~~~~~~~~~s-----pdg~~l~~~~~~~ 293 (297)
T 2ojh_A 248 DVRVQLMDMDGGNVE---TLFDLFGGQGTMNSPNWS-----PDGDEFAYVRYFP 293 (297)
T ss_dssp EEEEEEEETTSCSCE---EEEEEEESTTTSCSCCBC-----TTSSEEEEEEECC
T ss_pred ceEEEEEecCCCCce---eeeccCCCCcccccceEC-----CCCCEEEEEEecc
Confidence 56999999887643 233332223334445666 9999998887753
No 144
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.85 E-value=2e-19 Score=182.77 Aligned_cols=237 Identities=11% Similarity=0.096 Sum_probs=175.8
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCC-ccccccccccccccccccceeEEEeeecccccccccCCcEE
Q 007234 11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIAS-TETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (612)
Q Consensus 11 ~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (612)
+++++++.++++++.+++|++||..+++.+..+..+.. .+. .+.|.+. ++.+
T Consensus 5 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~------------------~~~~s~d---------g~~~ 57 (349)
T 1jmx_B 5 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPG------------------TAMMAPD---------NRTA 57 (349)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSC------------------EEEECTT---------SSEE
T ss_pred ccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCc------------------eeEECCC---------CCEE
Confidence 47899999999999999999999999998887763320 222 3344332 5544
Q ss_pred -EEEECCCcEEEEEcCCCeEEEEeccCC-----CCCeEEEEEecCCCEEEEEecC------------CcEEEEECCCCce
Q 007234 90 -VLGTGGGDVLALAVSAGQLKWRLSDCH-----PGGVSAISFATHGSCIYSAGAD------------GMVCEIDPLTGSL 151 (612)
Q Consensus 90 -~~gs~~g~I~vwd~~~~~~~~~~~~~h-----~~~V~~l~~sp~~~~l~s~s~d------------g~v~iwd~~~~~~ 151 (612)
+++..++.|.+||+.+++....+...+ ...+.+++|+|+|+++++++.+ +.|.+||+.+++.
T Consensus 58 ~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~ 137 (349)
T 1jmx_B 58 YVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLE 137 (349)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGG
T ss_pred EEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccc
Confidence 455567889999999998876664333 2337899999999999998865 8999999988543
Q ss_pred ---eEEEecCCCCeeEEEECCCCCEEEEeCCeEEEEEcCCCeeEEEEecCC-----------------------------
Q 007234 152 ---LGKFRASTKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGHP----------------------------- 199 (612)
Q Consensus 152 ---~~~~~~~~~~v~~l~~spdg~~l~~~~g~i~lwd~~~~~~~~~~~~h~----------------------------- 199 (612)
+..+.. ...+.+++|+|||+ ++++++.|++||+.+++.+..+..+.
T Consensus 138 ~~~~~~~~~-~~~~~~~~~s~dg~-l~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (349)
T 1jmx_B 138 AKPVRTFPM-PRQVYLMRAADDGS-LYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYT 215 (349)
T ss_dssp BCCSEEEEC-CSSCCCEEECTTSC-EEEESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEE
T ss_pred cceeeeccC-CCcccceeECCCCc-EEEccCcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeee
Confidence 344443 34688999999999 66677779999999998777665332
Q ss_pred ---------------------------------------CCEEEEEEee-CCcEEEEEEcCCCeEEEEEcCCCcccccee
Q 007234 200 ---------------------------------------GAVRFMTFSD-NGKYVLSSAVGERYIALWRTDGVKKQSASC 239 (612)
Q Consensus 200 ---------------------------------------~~v~~l~~sp-~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~ 239 (612)
..+..++|+| ++++++++ ++.|.+||+.+++..
T Consensus 216 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~---~~~v~~~d~~~~~~~---- 288 (349)
T 1jmx_B 216 IARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV---LNRLAKYDLKQRKLI---- 288 (349)
T ss_dssp EEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE---ESEEEEEETTTTEEE----
T ss_pred eeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE---cCeEEEEECccCeEE----
Confidence 1345677789 99988876 679999999987643
Q ss_pred eEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceeccc
Q 007234 240 VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT 290 (612)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~ 290 (612)
..+..... ...+.++ |+|++|++++.++.|.+||..+++.+..+
T Consensus 289 -~~~~~~~~-~~~~~~s-----~dg~~l~~~~~~~~v~v~d~~~~~~~~~~ 332 (349)
T 1jmx_B 289 -KAANLDHT-YYCVAFD-----KKGDKLYLGGTFNDLAVFNPDTLEKVKNI 332 (349)
T ss_dssp -EEEECSSC-CCEEEEC-----SSSSCEEEESBSSEEEEEETTTTEEEEEE
T ss_pred -EEEcCCCC-ccceEEC-----CCCCEEEEecCCCeEEEEeccccceeeee
Confidence 22222222 2356676 99998888888999999999998876543
No 145
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.84 E-value=1.8e-18 Score=176.21 Aligned_cols=242 Identities=10% Similarity=0.107 Sum_probs=161.2
Q ss_pred EEEcCCCCEEEEEeC---CCcEEEEECCCCcE--EEEeeccCCccccccccccccccccccceeEEEeeecccccccccC
Q 007234 11 TSFSPALDYFAICSG---DARIKIWDTLKGQV--QTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLG 85 (612)
Q Consensus 11 ~~fspdg~~las~s~---dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 85 (612)
++|||||+ |++++. ++.|.+||+.+++. +..+..+...+..++|+++
T Consensus 45 ~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spd--------------------------- 96 (347)
T 3hfq_A 45 LALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEA--------------------------- 96 (347)
T ss_dssp EEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETT---------------------------
T ss_pred EEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCC---------------------------
Confidence 49999999 554443 68999999987763 3333333444444444444
Q ss_pred CcEEEEEE-CCCcEEEEEcC-CCe--EEEEeccC--------CCCCeEEEEEecCCCEEEEEecCCcEEEEECC-CCcee
Q 007234 86 SSLLVLGT-GGGDVLALAVS-AGQ--LKWRLSDC--------HPGGVSAISFATHGSCIYSAGADGMVCEIDPL-TGSLL 152 (612)
Q Consensus 86 ~~~l~~gs-~~g~I~vwd~~-~~~--~~~~~~~~--------h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~-~~~~~ 152 (612)
++++++++ .++.|.+|++. .+. .+..+... +...+.+++|+|+|+.+++...++.|++||+. +++..
T Consensus 97 g~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~ 176 (347)
T 3hfq_A 97 RQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLS 176 (347)
T ss_dssp TTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEE
T ss_pred CCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEE
Confidence 77777777 67889999996 333 22222111 12348899999999966666678899999998 55433
Q ss_pred E--EEecC-CCCeeEEEECCCCCEEEEeC---CeEEEEEcCC--Cee--EEEEecCC------CCEEEEEEeeCCcEEEE
Q 007234 153 G--KFRAS-TKGISCMAVSSDGKMLATAA---GQLKTFNCSD--HKK--MQKFSGHP------GAVRFMTFSDNGKYVLS 216 (612)
Q Consensus 153 ~--~~~~~-~~~v~~l~~spdg~~l~~~~---g~i~lwd~~~--~~~--~~~~~~h~------~~v~~l~~sp~~~~l~s 216 (612)
. .+... ...+..++|+|||+++++++ +.|++|++.. ++. +..+.... ..+..++|+|||++|++
T Consensus 177 ~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v 256 (347)
T 3hfq_A 177 EQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYV 256 (347)
T ss_dssp EEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEE
T ss_pred EeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEE
Confidence 2 22332 23678999999999777654 7999999874 543 33343333 34888999999998866
Q ss_pred EEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecC-CcEEEE--ECCCccee
Q 007234 217 SAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET-GVCYIW--YGQNIEEL 287 (612)
Q Consensus 217 ~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~d-g~i~iw--d~~~~~~~ 287 (612)
++..++.|.+|++...... ..+............+.|+ |||++|++++.+ +.|.+| |..+++..
T Consensus 257 ~~~~~~~v~v~~~~~~g~~--~~~~~~~~~~~~~~~~~~s-----pdg~~l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 257 SNRGYNTLAVFAVTADGHL--TLIQQISTEGDFPRDFDLD-----PTEAFVVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp EEETTTEEEEEEECGGGCE--EEEEEEECSSSCCCEEEEC-----TTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred EeCCCCEEEEEEECCCCcE--EEeEEEecCCCCcCeEEEC-----CCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence 6556899999999743211 1233333323334566777 999998888764 899999 45556543
No 146
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.83 E-value=2.4e-19 Score=202.06 Aligned_cols=280 Identities=7% Similarity=-0.019 Sum_probs=194.5
Q ss_pred eeEEEeeecccccccccCCcEEEEEEC-CC-----cEEEEEcCCCeEEEEeccCCC------------------------
Q 007234 68 YTCMKWLSVDRKKKRKLGSSLLVLGTG-GG-----DVLALAVSAGQLKWRLSDCHP------------------------ 117 (612)
Q Consensus 68 ~~~~~w~~~~~~~~~~~~~~~l~~gs~-~g-----~I~vwd~~~~~~~~~~~~~h~------------------------ 117 (612)
...+.|.+. ++.|++++. +| .|++||+.+++....+. .+.
T Consensus 39 ~~~~~~Spd---------G~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (741)
T 2ecf_A 39 LMKPKVAPD---------GSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVD-SKVVLPGTETLSDEEKARRERQRIAAM 108 (741)
T ss_dssp CEEEEECTT---------SSEEEEEECCSSCTTEEEEEEEETTTCCEEEEEC-GGGTC--------------------CC
T ss_pred CCCceEecC---------CCEEEEEeccCCCCcccEEEEEECCCCceeEccc-hhhcccccccccchhhhhhhhhhhccc
Confidence 455666554 788999888 88 89999999998764442 232
Q ss_pred CCeEEEEEecCCCEEEEEecCCcEEEEECCCCc--eeEEEecCCCCeeEEEECCCCCEEEEeC-CeEEEEEcCCCeeEEE
Q 007234 118 GGVSAISFATHGSCIYSAGADGMVCEIDPLTGS--LLGKFRASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQK 194 (612)
Q Consensus 118 ~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~--~~~~~~~~~~~v~~l~~spdg~~l~~~~-g~i~lwd~~~~~~~~~ 194 (612)
..|.+++|+|||++|++++. +.|++||+.++. ....+..+...+.+++|+|||++|+.++ +.|++||+.+++....
T Consensus 109 ~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~~ 187 (741)
T 2ecf_A 109 TGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQMQL 187 (741)
T ss_dssp EESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEETTEEEEEETTTTEEEEC
T ss_pred cCcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeCCcEEEEecCCCCEEEe
Confidence 23889999999999999886 999999998873 4445666777899999999999999888 8999999999887655
Q ss_pred EecCCCC----------------EEEEEEeeCCcEEEEEEcCCC---------------------------------eEE
Q 007234 195 FSGHPGA----------------VRFMTFSDNGKYVLSSAVGER---------------------------------YIA 225 (612)
Q Consensus 195 ~~~h~~~----------------v~~l~~sp~~~~l~s~s~~d~---------------------------------~i~ 225 (612)
...+... +.++.|+|||++|++++ .|+ .|.
T Consensus 188 ~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~-~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~ 266 (741)
T 2ecf_A 188 TADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYAR-IDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLG 266 (741)
T ss_dssp CCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEE-EECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEE
T ss_pred ccCCccceeccccceeeeeccccccceEECCCCCEEEEEE-EcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEE
Confidence 4444433 36799999999999886 344 788
Q ss_pred EEEcCC-CccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEec-----CCcEEEEECCCcceecccCCceeE---
Q 007234 226 LWRTDG-VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-----TGVCYIWYGQNIEELRNTKATKIL--- 296 (612)
Q Consensus 226 vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~-----dg~i~iwd~~~~~~~~~~~~~~~~--- 296 (612)
+||+.+ ++.. .+.....+...+..+.| |||++|++++. ++.|++||+.+++...........
T Consensus 267 ~~d~~~~~~~~---~~~~~~~~~~~~~~~~~------pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~ 337 (741)
T 2ecf_A 267 VISPAEQAQTQ---WIDLGKEQDIYLARVNW------RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVP 337 (741)
T ss_dssp EECSSTTCCCE---EECCCSCSSEEEEEEEE------EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCC
T ss_pred EEECCCCCceE---EecCCCCcceEEEEEEe------CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCC
Confidence 899887 6533 11111122333333433 57888887764 568999999988754432211110
Q ss_pred eecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEE-EecCCCceEecccccee--e
Q 007234 297 SSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINL-NCSQDGVLLPMSQSLLK--S 373 (612)
Q Consensus 297 ~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l-~~S~dg~~l~~s~s~d~--~ 373 (612)
......|+|+++ .++++..++.. .++..+-. .. ...+..|...+..+ +|||||+.++++++.++ .
T Consensus 338 ~~~~~~~spdg~----~~~~~~~~g~~-----~l~~~~~~--~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~ 405 (741)
T 2ecf_A 338 LHNSLRFLDDGS----ILWSSERTGFQ-----HLYRIDSK--GK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARE 405 (741)
T ss_dssp CCSCCEECTTSC----EEEEECTTSSC-----EEEEECSS--SC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTC
T ss_pred cCCceEECCCCe----EEEEecCCCcc-----EEEEEcCC--CC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCce
Confidence 011233788877 66666665522 33333211 12 45677787788887 59999998856777666 8
Q ss_pred ecceeee
Q 007234 374 KRGRYVQ 380 (612)
Q Consensus 374 ~~~w~~~ 380 (612)
+++|.+.
T Consensus 406 ~~l~~~~ 412 (741)
T 2ecf_A 406 SQIYAVP 412 (741)
T ss_dssp BEEEEEE
T ss_pred EEEEEEE
Confidence 8899874
No 147
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.83 E-value=1e-17 Score=170.55 Aligned_cols=232 Identities=13% Similarity=0.095 Sum_probs=155.0
Q ss_pred CcEEEEEEC---CCcEEEEEcCCCeE--EEEeccCCCCCeEEEEEecCCCEEEEEe-cCCcEEEEECCC-C--ceeEEEe
Q 007234 86 SSLLVLGTG---GGDVLALAVSAGQL--KWRLSDCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPLT-G--SLLGKFR 156 (612)
Q Consensus 86 ~~~l~~gs~---~g~I~vwd~~~~~~--~~~~~~~h~~~V~~l~~sp~~~~l~s~s-~dg~v~iwd~~~-~--~~~~~~~ 156 (612)
++ +++++. ++.|.+|++.++.. +..+ ..+...+..++|+|+|++|++++ .++.|.+||+.. + +.+..+.
T Consensus 51 g~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~-~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~ 128 (347)
T 3hfq_A 51 DC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTV-VAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQ 128 (347)
T ss_dssp CE-EEEEEEETTEEEEEEEEEETTEEEEEEEE-EEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEE
T ss_pred Ce-EEEEEecCCCceEEEEEecCCcEEEeeee-ecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceee
Confidence 66 554444 57899999987764 2222 34677889999999999988888 689999999863 3 2333333
Q ss_pred cC---------CCCeeEEEECCCCCEEEEeC--CeEEEEEcC-CCeeE--EEEecCC-CCEEEEEEeeCCcEEEEEEcCC
Q 007234 157 AS---------TKGISCMAVSSDGKMLATAA--GQLKTFNCS-DHKKM--QKFSGHP-GAVRFMTFSDNGKYVLSSAVGE 221 (612)
Q Consensus 157 ~~---------~~~v~~l~~spdg~~l~~~~--g~i~lwd~~-~~~~~--~~~~~h~-~~v~~l~~sp~~~~l~s~s~~d 221 (612)
.. ...+.+++|+|||+++++.. +.|++||+. +++.. ..+..+. ..+..++|+|||+++++++..+
T Consensus 129 ~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~ 208 (347)
T 3hfq_A 129 HSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELS 208 (347)
T ss_dssp CCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTT
T ss_pred cCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCC
Confidence 21 12488999999999555544 799999998 55432 2233332 3678899999999888776678
Q ss_pred CeEEEEEcCC--CccccceeeEeec-CCc-----eeEEeEEecCCccCCCCcEEEE-EecCCcEEEEECCCcceecccCC
Q 007234 222 RYIALWRTDG--VKKQSASCVLAME-HPA-----VFMDCRCIDNGGVDDAGLYVLA-ISETGVCYIWYGQNIEELRNTKA 292 (612)
Q Consensus 222 ~~i~vwd~~~--~~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~~~l~t-~s~dg~i~iwd~~~~~~~~~~~~ 292 (612)
+.|.+|++.. ++.. ...... .+. .....+.|+ |||++|++ ...++.|.+|++.....+.
T Consensus 209 ~~v~v~~~~~~~g~~~---~~~~~~~~~~~~~~~~~~~~i~~s-----pdG~~l~v~~~~~~~v~v~~~~~~g~~~---- 276 (347)
T 3hfq_A 209 SQIASLKYDTQTGAFT---QLGIVKTIPADYTAHNGAAAIRLS-----HDGHFLYVSNRGYNTLAVFAVTADGHLT---- 276 (347)
T ss_dssp TEEEEEEEETTTTEEE---EEEEEESSCTTCCSCCEEEEEEEC-----TTSCEEEEEEETTTEEEEEEECGGGCEE----
T ss_pred CEEEEEEecCCCCceE---EeeeeeecCCCCCCCCcceeEEEC-----CCCCEEEEEeCCCCEEEEEEECCCCcEE----
Confidence 9999999875 3321 111211 111 345567777 99998755 4568999999975221100
Q ss_pred ceeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEecccccee
Q 007234 293 TKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLK 372 (612)
Q Consensus 293 ~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~ 372 (612)
. ...+..+...+..++|||||++|.+++..++
T Consensus 277 ---~---------------------------------------------~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~ 308 (347)
T 3hfq_A 277 ---L---------------------------------------------IQQISTEGDFPRDFDLDPTEAFVVVVNQNTD 308 (347)
T ss_dssp ---E---------------------------------------------EEEEECSSSCCCEEEECTTSSEEEEEETTTT
T ss_pred ---E---------------------------------------------eEEEecCCCCcCeEEECCCCCEEEEEEcCCC
Confidence 0 0012223335678899999998845555668
Q ss_pred eecceee
Q 007234 373 SKRGRYV 379 (612)
Q Consensus 373 ~~~~w~~ 379 (612)
.+.+|.+
T Consensus 309 ~v~v~~~ 315 (347)
T 3hfq_A 309 NATLYAR 315 (347)
T ss_dssp EEEEEEE
T ss_pred cEEEEEE
Confidence 9999966
No 148
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.83 E-value=7e-18 Score=171.75 Aligned_cols=233 Identities=9% Similarity=0.094 Sum_probs=174.1
Q ss_pred EEEEcCCCCEEEEE-eCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcE
Q 007234 10 LTSFSPALDYFAIC-SGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (612)
Q Consensus 10 ~~~fspdg~~las~-s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (612)
.++|+|||++++.+ ..++.|.+||..+++.+..+..+..... .........++.|.+. ++.
T Consensus 93 ~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~s~d---------g~~ 154 (353)
T 3vgz_A 93 GATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRT---------EEVRPLQPRELVADDA---------TNT 154 (353)
T ss_dssp SEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCC---------SSCCCCEEEEEEEETT---------TTE
T ss_pred eEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccc---------cccCCCCCceEEECCC---------CCE
Confidence 34999999966555 4579999999999998887764322100 0000112344555544 566
Q ss_pred EEEEE--CCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEec----CCCCe
Q 007234 89 LVLGT--GGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA----STKGI 162 (612)
Q Consensus 89 l~~gs--~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~----~~~~v 162 (612)
+++++ .++.|.+||+.+++....+. .+...+.+++|+|+|+.+++++.++.|.+||..+++....+.. +...+
T Consensus 155 l~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 233 (353)
T 3vgz_A 155 VYISGIGKESVIWVVDGGNIKLKTAIQ-NTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFF 233 (353)
T ss_dssp EEEEEESSSCEEEEEETTTTEEEEEEC-CCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCE
T ss_pred EEEEecCCCceEEEEcCCCCceEEEec-CCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCccc
Confidence 66665 47789999999999887763 3555688999999999999999999999999999998888765 34467
Q ss_pred eEEEECCCCCEEEEeC---CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCcccccee
Q 007234 163 SCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC 239 (612)
Q Consensus 163 ~~l~~spdg~~l~~~~---g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~ 239 (612)
.+++|+|+|+++++++ +.|++||..+++.+..+..+.. ..++|+|+|+++++++..++.|.+||+.+++..
T Consensus 234 ~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~--~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~---- 307 (353)
T 3vgz_A 234 INISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPES--LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVV---- 307 (353)
T ss_dssp EEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSC--CCEEEETTTTEEEEEETTTTEEEEEETTTTEEE----
T ss_pred ceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC--ceEEECCCCCEEEEEECCCCeEEEEECCCCeEE----
Confidence 8899999999877665 7999999999998888875442 569999999977777656899999999887643
Q ss_pred eEeecCCceeEEeEEecCCccCCCCcEEEEEecCC
Q 007234 240 VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG 274 (612)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg 274 (612)
..+.... ....+.|+ |+|++++++..++
T Consensus 308 -~~~~~~~-~~~~~~~s-----~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 308 -KTFDTPT-HPNSLALS-----ADGKTLYVSVKQK 335 (353)
T ss_dssp -EEEECCS-EEEEEEEC-----TTSCEEEEEEECC
T ss_pred -EEEecCC-CCCeEEEc-----CCCCEEEEEEccc
Confidence 2233333 34566776 9999887777654
No 149
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.83 E-value=1.8e-18 Score=174.80 Aligned_cols=242 Identities=10% Similarity=0.013 Sum_probs=175.6
Q ss_pred cceeEEEEcCCCCEEE-EEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccccc
Q 007234 6 IRDILTSFSPALDYFA-ICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (612)
Q Consensus 6 V~~l~~~fspdg~~la-s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (612)
+..+ +|+|||++++ +++.++.|.+||+.+++.+..+....... .......+.|.+.
T Consensus 36 ~~~~--~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~s~d-------- 92 (337)
T 1pby_B 36 PMVP--MVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEE-------------RVKSLFGAALSPD-------- 92 (337)
T ss_dssp CCCE--EECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTE-------------EEECTTCEEECTT--------
T ss_pred ccce--EEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccc-------------ccccccceEECCC--------
Confidence 4445 9999998765 45557899999999999887765321000 0001223334332
Q ss_pred CCcEEEEEE------------CCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCcee
Q 007234 85 GSSLLVLGT------------GGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLL 152 (612)
Q Consensus 85 ~~~~l~~gs------------~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~ 152 (612)
++.++++. .++.|.+||+.+++....+. ....+.+++|+|+|++++++ ++.|++||+.+++..
T Consensus 93 -g~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~ 167 (337)
T 1pby_B 93 -GKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE--APRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLV 167 (337)
T ss_dssp -SSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE--CCSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEE
T ss_pred -CCEEEEEecccccccccccccCceEEEEECCCCcEEEEEe--CCCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEe
Confidence 66777776 57899999999998876664 24568889999999988888 688999999999988
Q ss_pred EEEecCCCCeeEEEECCCCCEEEEeC---C-----------------------eEEEEEcCCCeeE-EEEecCCCCEEEE
Q 007234 153 GKFRASTKGISCMAVSSDGKMLATAA---G-----------------------QLKTFNCSDHKKM-QKFSGHPGAVRFM 205 (612)
Q Consensus 153 ~~~~~~~~~v~~l~~spdg~~l~~~~---g-----------------------~i~lwd~~~~~~~-~~~~~h~~~v~~l 205 (612)
..+..+.. ...+.|+|+|+.++..+ + .|.+||+.+++.. ..+..+...+.++
T Consensus 168 ~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~ 246 (337)
T 1pby_B 168 EDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFST 246 (337)
T ss_dssp EEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEE
T ss_pred eeeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeE
Confidence 87765441 11337899998776554 2 4789999998764 3345667788899
Q ss_pred EEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcc
Q 007234 206 TFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE 285 (612)
Q Consensus 206 ~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~ 285 (612)
+|+|+|++++++ ++.|.+||+.+++.. ....... ....+.|+ |+|+++++++.++.|.+||+.+++
T Consensus 247 ~~s~dg~~l~~~---~~~v~~~d~~~~~~~-----~~~~~~~-~~~~~~~s-----~dg~~l~~~~~~~~i~v~d~~~~~ 312 (337)
T 1pby_B 247 AVNPAKTRAFGA---YNVLESFDLEKNASI-----KRVPLPH-SYYSVNVS-----TDGSTVWLGGALGDLAAYDAETLE 312 (337)
T ss_dssp EECTTSSEEEEE---ESEEEEEETTTTEEE-----EEEECSS-CCCEEEEC-----TTSCEEEEESBSSEEEEEETTTCC
T ss_pred EECCCCCEEEEe---CCeEEEEECCCCcCc-----ceecCCC-ceeeEEEC-----CCCCEEEEEcCCCcEEEEECcCCc
Confidence 999999998876 589999999887643 2222222 23455676 999999999999999999999988
Q ss_pred eeccc
Q 007234 286 ELRNT 290 (612)
Q Consensus 286 ~~~~~ 290 (612)
.+..+
T Consensus 313 ~~~~~ 317 (337)
T 1pby_B 313 KKGQV 317 (337)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 76543
No 150
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.83 E-value=4.9e-19 Score=193.84 Aligned_cols=232 Identities=13% Similarity=0.095 Sum_probs=159.4
Q ss_pred cccceeEEEEcCCCCEEEEEeC-CCcEEEEECCCCcEEEEeeccC-CccccccccccccccccccceeEEEeeecccccc
Q 007234 4 SNIRDILTSFSPALDYFAICSG-DARIKIWDTLKGQVQTEFADIA-STETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (612)
Q Consensus 4 ~~V~~l~~~fspdg~~las~s~-dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (612)
.+|.++ +|||||++||+++. ||+++||++.+++..+ +..+. ..+....|++
T Consensus 22 ~~~~~~--~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~-lt~~~~~~~~~~~~sp------------------------ 74 (582)
T 3o4h_A 22 VEKYSL--QGVVDGDKLLVVGFSEGSVNAYLYDGGETVK-LNREPINSVLDPHYGV------------------------ 74 (582)
T ss_dssp SCEEEE--EEEETTTEEEEEEEETTEEEEEEEETTEEEE-CCSSCCSEECEECTTC------------------------
T ss_pred cchhee--ecCCCCCeEEEEEccCCceeEEEEcCCCcEe-eecccccccccccCCC------------------------
Confidence 366555 99999999999887 9999999997666544 33332 3444444442
Q ss_pred cccCCcEEEEEEC---CCcEEEEEcCC---CeEEEEeccCCCCCeEEEEEecCCCE-EEEEecCCcEEEEECCCCceeEE
Q 007234 82 RKLGSSLLVLGTG---GGDVLALAVSA---GQLKWRLSDCHPGGVSAISFATHGSC-IYSAGADGMVCEIDPLTGSLLGK 154 (612)
Q Consensus 82 ~~~~~~~l~~gs~---~g~I~vwd~~~---~~~~~~~~~~h~~~V~~l~~sp~~~~-l~s~s~dg~v~iwd~~~~~~~~~ 154 (612)
++++++++. +....+|.+.. +... .+.. ...+...+|+|+|+. +++.+.++.+.+||+.+++....
T Consensus 75 ----d~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~--~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l 147 (582)
T 3o4h_A 75 ----GRVILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEA--VKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLREL 147 (582)
T ss_dssp ----SEEEEEEECSTTSCCEEEEEEETTSTTCCE-ECTT--SCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEE
T ss_pred ----CeEEEEeccCCCCcceEEEEEeccCCCccc-cccC--CCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEe
Confidence 334555654 34455654432 2222 3332 233556788888864 33444445556999998877665
Q ss_pred EecCCCCeeEEEECCCCCEEEEeC------CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCC--eEEE
Q 007234 155 FRASTKGISCMAVSSDGKMLATAA------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER--YIAL 226 (612)
Q Consensus 155 ~~~~~~~v~~l~~spdg~~l~~~~------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~--~i~v 226 (612)
...+. .+++|+|||+++++++ +.|++||+.+++.. .+.+|...+..++|+|||+.|+++. .++ .|++
T Consensus 148 ~~~~~---~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~-~~~~~~i~~ 222 (582)
T 3o4h_A 148 ARLPG---FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLE-TAREARLVT 222 (582)
T ss_dssp EEESS---CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEE-CSSCEEEEE
T ss_pred ecCCC---ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEcc-CCCeeEEEE
Confidence 54333 8899999999999665 36999999988754 6788999999999999999999655 688 8999
Q ss_pred EEcCCCccccceeeEeecCCceeEEeEE--------ecCCccCCCCcEEEEEecCCcEEEEECCCccee
Q 007234 227 WRTDGVKKQSASCVLAMEHPAVFMDCRC--------IDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL 287 (612)
Q Consensus 227 wd~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~ 287 (612)
||+.+++.. ....+...+.... |+ |||.++++++.||.+++|++ ++..
T Consensus 223 ~d~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~s-----pdg~~~~~~~~~g~~~l~~~--g~~~ 278 (582)
T 3o4h_A 223 VDPRDGSVE------DLELPSKDFSSYRPTAITWLGYL-----PDGRLAVVARREGRSAVFID--GERV 278 (582)
T ss_dssp ECTTTCCEE------ECCCSCSHHHHHCCSEEEEEEEC-----TTSCEEEEEEETTEEEEEET--TEEE
T ss_pred EcCCCCcEE------EccCCCcChhhhhhccccceeEc-----CCCcEEEEEEcCCcEEEEEE--CCee
Confidence 999887532 2222222122222 66 99988999999999999998 5544
No 151
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.82 E-value=2.7e-19 Score=187.99 Aligned_cols=213 Identities=12% Similarity=0.032 Sum_probs=153.2
Q ss_pred ccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccccc
Q 007234 5 NIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (612)
Q Consensus 5 ~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (612)
.++.+ ++++++.++++++.|| ++||+........ ...........+... ..-+....+.++.|.+.
T Consensus 38 ~~n~l--avs~~~~~l~~~~~dg-v~v~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~v~~l~~spd-------- 103 (434)
T 2oit_A 38 RSSLL--AVSNKYGLVFAGGASG-LQIFPTKNLLIQN--KPGDDPNKIVDKVQG-LLVPMKFPIHHLALSCD-------- 103 (434)
T ss_dssp CCBCE--EEETTTTEEEEEETTE-EEEEEHHHHCCCC--CTTCCTTCEEECCCC-EEECCSSCEEEEEECTT--------
T ss_pred CccEE--EEecCCCEEEEECCCE-EEEEEchHhhhhc--ccccCcccccccCcc-ccccCCCcccEEEEcCC--------
Confidence 35445 9999999999999888 8998764221100 000000000000000 00111335677888765
Q ss_pred CCcEEE----EEECCCcEEEEEcCCC--------eE--EEEeccCCCCCeEEEEEecC-CCEEEEEecCCcEEEEECCCC
Q 007234 85 GSSLLV----LGTGGGDVLALAVSAG--------QL--KWRLSDCHPGGVSAISFATH-GSCIYSAGADGMVCEIDPLTG 149 (612)
Q Consensus 85 ~~~~l~----~gs~~g~I~vwd~~~~--------~~--~~~~~~~h~~~V~~l~~sp~-~~~l~s~s~dg~v~iwd~~~~ 149 (612)
+++|+ +|+.|+.|++||+.++ +. ......+|...|.+++|+|+ +.+|++++.||+|++||++++
T Consensus 104 -g~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~ 182 (434)
T 2oit_A 104 -NLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTET 182 (434)
T ss_dssp -SCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSS
T ss_pred -CCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCC
Confidence 66777 6778999999998765 11 12444679999999999997 789999999999999999999
Q ss_pred ceeEEEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCC-------CCEEEEEEeeCCcEEEEEEcC
Q 007234 150 SLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHP-------GAVRFMTFSDNGKYVLSSAVG 220 (612)
Q Consensus 150 ~~~~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~-------~~v~~l~~sp~~~~l~s~s~~ 220 (612)
..+.....|...|.+++|+|+|++|++|+ |.|++||++ ++....+..|. ..|.++.|++++.++++.+..
T Consensus 183 ~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~ 261 (434)
T 2oit_A 183 VKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAA 261 (434)
T ss_dssp EEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEET
T ss_pred cceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccC
Confidence 77777777888999999999999999998 899999998 66666665443 379999999999888765545
Q ss_pred CC------eEEEEEcCCCc
Q 007234 221 ER------YIALWRTDGVK 233 (612)
Q Consensus 221 d~------~i~vwd~~~~~ 233 (612)
|| .+++|++.+.+
T Consensus 262 dg~~~~~~~v~i~~l~~~~ 280 (434)
T 2oit_A 262 DGTLETSPDVVMALLPKKE 280 (434)
T ss_dssp TCCSSSCCEEEEEECCCTT
T ss_pred CCccCCCCceEEEEeccCC
Confidence 53 38999998653
No 152
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.81 E-value=1.5e-18 Score=194.99 Aligned_cols=238 Identities=11% Similarity=0.047 Sum_probs=168.0
Q ss_pred cceeEEEEcCCCCEEEEEeCC---------CcEEEEECCCCcEEEEeec---cCCccccccccccccccccccceeEEEe
Q 007234 6 IRDILTSFSPALDYFAICSGD---------ARIKIWDTLKGQVQTEFAD---IASTETTSLYGNRLEREHLSVDYTCMKW 73 (612)
Q Consensus 6 V~~l~~~fspdg~~las~s~d---------g~i~iwd~~~~~~~~~~~~---~~~~~~~~~~s~~~~~~~~~~~~~~~~w 73 (612)
|..+ +|||||++||+++.+ +.|.+||+.+++. ..+.. +...+....|+++
T Consensus 63 v~~~--~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPd--------------- 124 (723)
T 1xfd_A 63 AIRY--EISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPK--------------- 124 (723)
T ss_dssp CSEE--EECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSS---------------
T ss_pred cceE--EECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCC---------------
Confidence 6555 999999999999864 7788999999886 33332 2223455556655
Q ss_pred eecccccccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCC------------------eEEEEEecCCCEEEEE
Q 007234 74 LSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGG------------------VSAISFATHGSCIYSA 135 (612)
Q Consensus 74 ~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~------------------V~~l~~sp~~~~l~s~ 135 (612)
++.|+.++. ++|++||+.+++..... ..+... +.+++|+|||+.|+++
T Consensus 125 ------------G~~la~~~~-~~i~~~~~~~g~~~~~~-~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~ 190 (723)
T 1xfd_A 125 ------------GQQLIFIFE-NNIYYCAHVGKQAIRVV-STGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYA 190 (723)
T ss_dssp ------------TTCEEEEET-TEEEEESSSSSCCEEEE-CCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEE
T ss_pred ------------CCEEEEEEC-CeEEEEECCCCceEEEe-cCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEE
Confidence 777888876 78999999998876444 333333 3789999999999998
Q ss_pred ecCC----------------------------------cEEEEECCCCceeEEEecC------CCCeeEEEECCCCCEEE
Q 007234 136 GADG----------------------------------MVCEIDPLTGSLLGKFRAS------TKGISCMAVSSDGKMLA 175 (612)
Q Consensus 136 s~dg----------------------------------~v~iwd~~~~~~~~~~~~~------~~~v~~l~~spdg~~l~ 175 (612)
+.|+ .|++||+.+++....+..+ ...+.+++|+|||++++
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~ 270 (723)
T 1xfd_A 191 AINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAV 270 (723)
T ss_dssp EEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEE
T ss_pred EECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEE
Confidence 7653 7999999988866666654 45789999999999987
Q ss_pred EeC------CeEEEEEcCCCeeEEEEec-CCCCEE----EEEEeeCCcEEEEE-EcCCC------eEEEEE-cCCCcccc
Q 007234 176 TAA------GQLKTFNCSDHKKMQKFSG-HPGAVR----FMTFSDNGKYVLSS-AVGER------YIALWR-TDGVKKQS 236 (612)
Q Consensus 176 ~~~------g~i~lwd~~~~~~~~~~~~-h~~~v~----~l~~sp~~~~l~s~-s~~d~------~i~vwd-~~~~~~~~ 236 (612)
+.. ..|++||+.+++....+.. +...+. .++|+|||+.|+.. +..++ .|.+|| ..++...
T Consensus 271 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~- 349 (723)
T 1xfd_A 271 TWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSND- 349 (723)
T ss_dssp EEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSC-
T ss_pred EEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCcc-
Confidence 653 4799999999987666543 344443 78999999977764 44577 466666 3333300
Q ss_pred ceeeEeec-CCceeEEeEEecCCccCCCCcEEEEEecC---CcEEEEECCC
Q 007234 237 ASCVLAME-HPAVFMDCRCIDNGGVDDAGLYVLAISET---GVCYIWYGQN 283 (612)
Q Consensus 237 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~t~s~d---g~i~iwd~~~ 283 (612)
+...+. +.........|+ |||+.|+..+.+ +.+++|++..
T Consensus 350 --~~~~l~~~~~~~~~~~~~s-----pdg~~l~~~~~~~~~~~~~l~~~~~ 393 (723)
T 1xfd_A 350 --NIQSITSGDWDVTKILAYD-----EKGNKIYFLSTEDLPRRRQLYSANT 393 (723)
T ss_dssp --CCCBSCCSSSCEEEEEEEE-----TTTTEEEEEESSSCTTCCEEEEECS
T ss_pred --ceeEeecCCeEEEeeeEEc-----CCCCEEEEEEcCCCCcceEEEEEeC
Confidence 011122 223333445677 999999877655 7899999764
No 153
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.81 E-value=3.4e-19 Score=200.23 Aligned_cols=324 Identities=9% Similarity=0.021 Sum_probs=194.9
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCC---ccccccccccccccccccceeEEEeeecccccccccCC
Q 007234 10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIAS---TETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGS 86 (612)
Q Consensus 10 ~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~---~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 86 (612)
.++|+|||+++++ +.||+|++||+.+++....+.++.. .+.+..|+++ +
T Consensus 20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpD---------------------------g 71 (719)
T 1z68_A 20 FPNWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPD---------------------------R 71 (719)
T ss_dssp CCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTT---------------------------S
T ss_pred ccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCC---------------------------C
Confidence 4599999976554 4699999999999998776654432 1333444444 7
Q ss_pred cEEEEEEC---------CCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEE-e
Q 007234 87 SLLVLGTG---------GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKF-R 156 (612)
Q Consensus 87 ~~l~~gs~---------~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~-~ 156 (612)
+.|+.++. ++.|++||+.+++.+... .....+..++|||||+.|+.++ |+.|++||+.+++..... .
T Consensus 72 ~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~--~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~ 148 (719)
T 1z68_A 72 QFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGN--ELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFN 148 (719)
T ss_dssp SEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSS--CCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCC
T ss_pred CeEEEEecCceeEEeecceEEEEEECCCCccccce--ecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecC
Confidence 88888876 688999999999873111 1135688999999999999885 789999999888765432 2
Q ss_pred cCCCCe-----------------eEEEECCCCCEEEEeC-C-----------------------------------eEEE
Q 007234 157 ASTKGI-----------------SCMAVSSDGKMLATAA-G-----------------------------------QLKT 183 (612)
Q Consensus 157 ~~~~~v-----------------~~l~~spdg~~l~~~~-g-----------------------------------~i~l 183 (612)
++...+ .+++|+|||++|++++ . .|++
T Consensus 149 ~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~ 228 (719)
T 1z68_A 149 GRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFI 228 (719)
T ss_dssp CBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEE
T ss_pred CCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEE
Confidence 222212 4899999999999875 1 7889
Q ss_pred EEcCCCeeE--------EEEecCCCCEEEEEEeeCCcEEEEEEcC-C--CeEEEEE----cCCCccccceeeEe---ecC
Q 007234 184 FNCSDHKKM--------QKFSGHPGAVRFMTFSDNGKYVLSSAVG-E--RYIALWR----TDGVKKQSASCVLA---MEH 245 (612)
Q Consensus 184 wd~~~~~~~--------~~~~~h~~~v~~l~~sp~~~~l~s~s~~-d--~~i~vwd----~~~~~~~~~~~~~~---~~~ 245 (612)
||+.+++.. ..+.+|...+.+++|+||++.+++.... + ..|.+|| +.+++... +.. ..+
T Consensus 229 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~---~~~~~~~~~ 305 (719)
T 1z68_A 229 IDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPK---TQEHIEESR 305 (719)
T ss_dssp EESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCG---GGEEEEECS
T ss_pred EECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEE---EEecccccC
Confidence 999988642 1234688889999999998876664321 2 2488889 76665431 111 122
Q ss_pred CceeE----EeEEecCCccCCCCcEEEE--EecCC--cEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhcc
Q 007234 246 PAVFM----DCRCIDNGGVDDAGLYVLA--ISETG--VCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAA 317 (612)
Q Consensus 246 ~~~~~----~~~~~~~~~~~~~~~~l~t--~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~ 317 (612)
...+- ....|+ |||+.++. ...+| .|.+||+.+++.. ........+.... +. +++ .|+..
T Consensus 306 ~~~~~~~~~~~~~~s-----pdg~~l~~~~~~~~g~~~l~~~~~~~~~~~-~lt~~~~~v~~~~-~~-d~~----~i~~~ 373 (719)
T 1z68_A 306 TGWAGGFFVSTPVFS-----YDAISYYKIFSDKDGYKHIHYIKDTVENAI-QITSGKWEAINIF-RV-TQD----SLFYS 373 (719)
T ss_dssp SSCSSSSSCCCCEEC-----TTSSCEEEEEECTTSCEEEEEESSCSTTCE-ECSCSSSCEEEEE-EE-CSS----EEEEE
T ss_pred CceEccccCCccEEC-----CCCCeEEEEEEccCCceEEEEEECCCCceE-ecccCceEEEEEE-EE-eCC----EEEEE
Confidence 22211 145566 99986554 44555 5677777666522 1221111111111 22 333 33332
Q ss_pred cccceecCCCceEEEEeCCccCceEEEeec----cCCCeEEEEecCCCceEeccccce--eeecceee
Q 007234 318 KLQDIVKPASVHTFVAYGLLLKPSFQKILV----NSGEDINLNCSQDGVLLPMSQSLL--KSKRGRYV 379 (612)
Q Consensus 318 ~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~----h~~~v~~l~~S~dg~~l~~s~s~d--~~~~~w~~ 379 (612)
+.++........++......-....+.+.. |...+..+.|||||++++++++.+ -.+.+|+.
T Consensus 374 ~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~ 441 (719)
T 1z68_A 374 SNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDG 441 (719)
T ss_dssp ESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECS
T ss_pred EecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEEC
Confidence 221000000122333221000001122322 555678899999999885555544 24456655
No 154
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.81 E-value=1.9e-17 Score=169.65 Aligned_cols=239 Identities=15% Similarity=0.152 Sum_probs=157.9
Q ss_pred EEEcCCCCEEEEEeCC----CcEEEEECCC--CcEEE--EeeccCCccccccccccccccccccceeEEEeeeccccccc
Q 007234 11 TSFSPALDYFAICSGD----ARIKIWDTLK--GQVQT--EFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (612)
Q Consensus 11 ~~fspdg~~las~s~d----g~i~iwd~~~--~~~~~--~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (612)
++|||||++|++++.+ +.|.+|++.. |+... ....+ ......+.+ +
T Consensus 55 l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~------------------~~~p~~~~~---d----- 108 (361)
T 3scy_A 55 LIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTM------------------GADPCYLTT---N----- 108 (361)
T ss_dssp EEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECS------------------SSCEEEEEE---C-----
T ss_pred EEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccC------------------CCCcEEEEE---C-----
Confidence 4999999999998875 7999998765 54322 22111 112222333 2
Q ss_pred ccCCcEEEEEE-CCCcEEEEEcCCCeEEEEec-----c--------CCCCCeEEEEEecCCCEEEEEe-cCCcEEEEECC
Q 007234 83 KLGSSLLVLGT-GGGDVLALAVSAGQLKWRLS-----D--------CHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPL 147 (612)
Q Consensus 83 ~~~~~~l~~gs-~~g~I~vwd~~~~~~~~~~~-----~--------~h~~~V~~l~~sp~~~~l~s~s-~dg~v~iwd~~ 147 (612)
++++++++ .++.|.+|++.....+.... . .+...+.+++|+|+|+++++++ .++.|.+|++.
T Consensus 109 ---g~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~ 185 (361)
T 3scy_A 109 ---GKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNIN 185 (361)
T ss_dssp ---SSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred ---CCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEc
Confidence 56666666 57889999997543321110 1 1233468899999999776665 48899999887
Q ss_pred CCce------e------EEE-ecCCCCeeEEEECCCCCEEEEeC---CeEEEEEcCCCee--EEEEe---cCCCCEEEEE
Q 007234 148 TGSL------L------GKF-RASTKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKK--MQKFS---GHPGAVRFMT 206 (612)
Q Consensus 148 ~~~~------~------~~~-~~~~~~v~~l~~spdg~~l~~~~---g~i~lwd~~~~~~--~~~~~---~h~~~v~~l~ 206 (612)
.... + ..+ ......+.+++|+|||+++++++ +.|.+||+.+++. +..+. .+......++
T Consensus 186 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~ 265 (361)
T 3scy_A 186 PNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIH 265 (361)
T ss_dssp TTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEE
T ss_pred CCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEE
Confidence 5431 1 122 22345688999999999877655 7999999987754 33332 3334578999
Q ss_pred EeeCCcEEEEEEcC-CCeEEEEEcC--CCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEe-cCCcEEEEE--
Q 007234 207 FSDNGKYVLSSAVG-ERYIALWRTD--GVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWY-- 280 (612)
Q Consensus 207 ~sp~~~~l~s~s~~-d~~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s-~dg~i~iwd-- 280 (612)
|+|||++|+++... ++.|.+|++. +++.. .+..... ......+.|+ |+|++|++++ .++.|.+|+
T Consensus 266 ~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~---~~~~~~~-g~~~~~~~~s-----pdg~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 266 LSPDGKYLYASNRLKADGVAIFKVDETNGTLT---KVGYQLT-GIHPRNFIIT-----PNGKYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp ECTTSSEEEEEECSSSCEEEEEEECTTTCCEE---EEEEEEC-SSCCCEEEEC-----TTSCEEEEEETTTTEEEEEEEC
T ss_pred ECCCCCEEEEECCCCCCEEEEEEEcCCCCcEE---EeeEecC-CCCCceEEEC-----CCCCEEEEEECCCCCEEEEEEE
Confidence 99999999877655 5899999996 33322 2222222 2334456776 9999998887 578999965
Q ss_pred CCCccee
Q 007234 281 GQNIEEL 287 (612)
Q Consensus 281 ~~~~~~~ 287 (612)
..+++..
T Consensus 337 ~~~g~~~ 343 (361)
T 3scy_A 337 QATGLLT 343 (361)
T ss_dssp TTTCCEE
T ss_pred CCCCcEe
Confidence 4466543
No 155
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.81 E-value=4.8e-18 Score=190.39 Aligned_cols=254 Identities=13% Similarity=0.107 Sum_probs=175.0
Q ss_pred cccceeEEEEcCCCCEEEEEeCCCcEEEEECCC-----CcEEEEeeccCCccccccccccccccccccceeEEEeeeccc
Q 007234 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLK-----GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDR 78 (612)
Q Consensus 4 ~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~-----~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~ 78 (612)
..+..+ +|||||++||++ .|+.|++||+.+ ++.......+...+. ...+....+ .....++.|.+.
T Consensus 121 ~~~~~~--~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~---~g~~~~~ee-~~~~~~~~~SpD-- 191 (706)
T 2z3z_A 121 EETASL--DFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLV---YGQAVHQRE-FGIEKGTFWSPK-- 191 (706)
T ss_dssp TCCTTC--EECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEE---ESSCCGGGC-TTCCCSEEECTT--
T ss_pred ccccCC--cCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeE---cccchhhhh-cCCCceEEECCC--
Confidence 445555 999999999985 579999999998 776654432222110 000000000 011244555544
Q ss_pred ccccccCCcEEEEEE---------------------------------CCCcEEEEEcCCCeEEEEec-cCCCCCeEEEE
Q 007234 79 KKKRKLGSSLLVLGT---------------------------------GGGDVLALAVSAGQLKWRLS-DCHPGGVSAIS 124 (612)
Q Consensus 79 ~~~~~~~~~~l~~gs---------------------------------~~g~I~vwd~~~~~~~~~~~-~~h~~~V~~l~ 124 (612)
++.|++++ .++.|++||+.+++...... ..|...+.+++
T Consensus 192 -------g~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~ 264 (706)
T 2z3z_A 192 -------GSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLS 264 (706)
T ss_dssp -------SSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEE
T ss_pred -------CCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEE
Confidence 67777776 34569999999988754332 25777899999
Q ss_pred EecCCCEEEEEecCC-----cEEEEECCCCceeEEEe-c-CCC---CeeEEEECC--CCCEEEEeC--CeEEEEEcC-CC
Q 007234 125 FATHGSCIYSAGADG-----MVCEIDPLTGSLLGKFR-A-STK---GISCMAVSS--DGKMLATAA--GQLKTFNCS-DH 189 (612)
Q Consensus 125 ~sp~~~~l~s~s~dg-----~v~iwd~~~~~~~~~~~-~-~~~---~v~~l~~sp--dg~~l~~~~--g~i~lwd~~-~~ 189 (612)
|+|||+.|++++.++ .|++||+.+++....+. . +.. .+.+++|+| ||+++++++ |.+++|++. ++
T Consensus 265 ~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~ 344 (706)
T 2z3z_A 265 WSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTG 344 (706)
T ss_dssp ECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTS
T ss_pred EECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCC
Confidence 999999999988775 89999999984444332 2 221 246789999 999998887 777888775 66
Q ss_pred eeEEEEecCCCCEEE-EEEeeCCcEEEEEEcCCC----eEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCC
Q 007234 190 KKMQKFSGHPGAVRF-MTFSDNGKYVLSSAVGER----YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAG 264 (612)
Q Consensus 190 ~~~~~~~~h~~~v~~-l~~sp~~~~l~s~s~~d~----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (612)
+.+..+..|...+.. +.|+|+|+.++.++..++ .|..||+.++... .+.+... +..+.|+ |||
T Consensus 345 ~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~~------~l~~~~~-~~~~~~s-----pdg 412 (706)
T 2z3z_A 345 RLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKTK------DLTPESG-MHRTQLS-----PDG 412 (706)
T ss_dssp CEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCCE------ESCCSSS-EEEEEEC-----TTS
T ss_pred CEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCce------eccCCCc-eEEEEEC-----CCC
Confidence 777888888888887 799999998887775554 6777777765422 2223333 4567777 999
Q ss_pred cEEEEEecC----CcEEEEECCCcc
Q 007234 265 LYVLAISET----GVCYIWYGQNIE 285 (612)
Q Consensus 265 ~~l~t~s~d----g~i~iwd~~~~~ 285 (612)
++++..+.+ +.|++||..+++
T Consensus 413 ~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 413 SAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp SEEEEEEECSSCSCEEEEEESSSCE
T ss_pred CEEEEEecCCCCCcEEEEEECCCCe
Confidence 988877543 569999998776
No 156
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.80 E-value=7.3e-18 Score=174.29 Aligned_cols=238 Identities=9% Similarity=0.046 Sum_probs=161.8
Q ss_pred EEEcCCCCEEEEEeC-CC--cEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCc
Q 007234 11 TSFSPALDYFAICSG-DA--RIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (612)
Q Consensus 11 ~~fspdg~~las~s~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (612)
.+|||||++||+++. +| .|.+||+.+++......++...+....|+++ ++
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spd---------------------------g~ 93 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPD---------------------------DD 93 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTT---------------------------SS
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCC---------------------------CC
Confidence 389999999999887 67 4888899999887766554444334455555 88
Q ss_pred EEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEE--EecCCCEEEEE----------------------ecCCcEEE
Q 007234 88 LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAIS--FATHGSCIYSA----------------------GADGMVCE 143 (612)
Q Consensus 88 ~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~--~sp~~~~l~s~----------------------s~dg~v~i 143 (612)
.|+.++.++.|++||+.+++..... ..+...+.... ++|++..++.. +.+..|.+
T Consensus 94 ~l~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 172 (388)
T 3pe7_A 94 ALFYVKDGRNLMRVDLATLEENVVY-QVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMR 172 (388)
T ss_dssp EEEEEETTTEEEEEETTTCCEEEEE-ECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEE
T ss_pred EEEEEeCCCeEEEEECCCCcceeee-echhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEE
Confidence 8999999999999999999876433 34555454443 48999887743 23468999
Q ss_pred EECCCCceeEEEecCCCCeeEEEECC-CCCEEEEeC-C-------eEEEEEcCCCeeEEEEecCC--CCEEEEEEeeCCc
Q 007234 144 IDPLTGSLLGKFRASTKGISCMAVSS-DGKMLATAA-G-------QLKTFNCSDHKKMQKFSGHP--GAVRFMTFSDNGK 212 (612)
Q Consensus 144 wd~~~~~~~~~~~~~~~~v~~l~~sp-dg~~l~~~~-g-------~i~lwd~~~~~~~~~~~~h~--~~v~~l~~sp~~~ 212 (612)
||+.+++..... .+...+..++|+| ||+.|+... + .|+++|..+++. ..+..+. ..+..+.|+|||+
T Consensus 173 ~d~~~g~~~~l~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~ 250 (388)
T 3pe7_A 173 VDLKTGESTVIL-QENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFWVPDGS 250 (388)
T ss_dssp EETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEECTTSS
T ss_pred EECCCCceEEee-cCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceECCCCC
Confidence 999988754443 4566789999999 999887654 2 788888876644 3444444 3577889999999
Q ss_pred EEEEEEcCCC----eEEEEEcCCCccccceeeEeecCCcee---EEeEEecCCccCCCCcEEEEE---------ecCCcE
Q 007234 213 YVLSSAVGER----YIALWRTDGVKKQSASCVLAMEHPAVF---MDCRCIDNGGVDDAGLYVLAI---------SETGVC 276 (612)
Q Consensus 213 ~l~s~s~~d~----~i~vwd~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~t~---------s~dg~i 276 (612)
.|+..+..++ .|.+||+.+++.. .+......... .....|+ |||+.|+.. ..+..|
T Consensus 251 ~l~~~~~~~~~~~~~l~~~d~~~g~~~---~l~~~~~~~~~~~~~~~~~~s-----pdg~~l~~~~~~~~~~~~~~~~~i 322 (388)
T 3pe7_A 251 ALVYVSYLKGSPDRFIYSADPETLENR---QLTSMPACSHLMSNYDGSLMV-----GDGSDAPVDVQDDSGYKIENDPFL 322 (388)
T ss_dssp CEEEEEEETTCCCEEEEEECTTTCCEE---EEEEECCEEEEEECTTSSEEE-----EEECCC------------CCCCEE
T ss_pred EEEEEecCCCCCcceEEEEecCCCceE---EEEcCCCceeeeecCCCCeEc-----cCCCcceeEeeeccccccCCCCEE
Confidence 7766543322 3999999988643 22222210000 0111344 888887754 345689
Q ss_pred EEEECCCcce
Q 007234 277 YIWYGQNIEE 286 (612)
Q Consensus 277 ~iwd~~~~~~ 286 (612)
++||+.+++.
T Consensus 323 ~~~d~~~~~~ 332 (388)
T 3pe7_A 323 YVFNMKNGTQ 332 (388)
T ss_dssp EEEETTTTEE
T ss_pred EEEeccCCce
Confidence 9999887654
No 157
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.80 E-value=4.4e-17 Score=167.36 Aligned_cols=239 Identities=14% Similarity=0.164 Sum_probs=162.0
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECC-CCcEEEEeecc-CCccccccccccccccccccceeEEEeeecccccccccCCc
Q 007234 10 LTSFSPALDYFAICSGDARIKIWDTL-KGQVQTEFADI-ASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (612)
Q Consensus 10 ~~~fspdg~~las~s~dg~i~iwd~~-~~~~~~~~~~~-~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (612)
.++|+|||++|++++.+ .|.+|++. +|+........ .+....+.|+++ ++
T Consensus 44 ~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spd---------------------------g~ 95 (365)
T 1jof_A 44 WMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTN---------------------------TR 95 (365)
T ss_dssp EEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSC---------------------------CE
T ss_pred EEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCC---------------------------CC
Confidence 45999999999988887 99999997 78765443311 122344555554 55
Q ss_pred E--EEEEE-------------CCCcEEEEEcC-CCeEEEEec---cCCCCCeEEEEEecCCCEEEEEec-CCcEEEEECC
Q 007234 88 L--LVLGT-------------GGGDVLALAVS-AGQLKWRLS---DCHPGGVSAISFATHGSCIYSAGA-DGMVCEIDPL 147 (612)
Q Consensus 88 ~--l~~gs-------------~~g~I~vwd~~-~~~~~~~~~---~~h~~~V~~l~~sp~~~~l~s~s~-dg~v~iwd~~ 147 (612)
. ++++. .+|.+.+|++. .++....+. ..+...+.+++|+|+|+++++++. ++.|++||+.
T Consensus 96 ~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~ 175 (365)
T 1jof_A 96 AIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKL 175 (365)
T ss_dssp EEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred EEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEEC
Confidence 3 33442 68889999997 465543321 135578999999999998887764 6799999998
Q ss_pred -CCcee--EEEec--CCCCeeEEEECCCCCEEEEeC---CeEEEEEcC--CCeeE---EEEe-------cCCC------C
Q 007234 148 -TGSLL--GKFRA--STKGISCMAVSSDGKMLATAA---GQLKTFNCS--DHKKM---QKFS-------GHPG------A 201 (612)
Q Consensus 148 -~~~~~--~~~~~--~~~~v~~l~~spdg~~l~~~~---g~i~lwd~~--~~~~~---~~~~-------~h~~------~ 201 (612)
+++.. ..+.. +...+..++|+|||+++++++ +.|.+|++. +++.. ..+. +|.. .
T Consensus 176 ~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 255 (365)
T 1jof_A 176 ASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLY 255 (365)
T ss_dssp TTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSE
T ss_pred CCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccc
Confidence 67653 33432 355789999999999988765 789999865 56542 2222 1222 4
Q ss_pred EEEEE-EeeCCcEEEEEEcCCC-----eEEEEEcC-CCccccceeeE-eecCCceeEEeEEecCCccCC---CCcEEEEE
Q 007234 202 VRFMT-FSDNGKYVLSSAVGER-----YIALWRTD-GVKKQSASCVL-AMEHPAVFMDCRCIDNGGVDD---AGLYVLAI 270 (612)
Q Consensus 202 v~~l~-~sp~~~~l~s~s~~d~-----~i~vwd~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~l~t~ 270 (612)
+..++ |+|||++|+++...+. .|.+|++. +++.. .+. ...........++++ | ||++|+++
T Consensus 256 ~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~---~~~~~~~~~~~~~~~~a~s-----p~~~dg~~l~v~ 327 (365)
T 1jof_A 256 RADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIE---KQLFLSPTPTSGGHSNAVS-----PCPWSDEWMAIT 327 (365)
T ss_dssp EEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEE---EEEEEEECSSCCTTCCCEE-----ECTTCTTEEEEE
T ss_pred cccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEE---EeeeeeecCCCCcccceec-----CCCcCCCEEEEE
Confidence 88999 9999998887653333 89999996 44322 111 122122222334455 7 89999999
Q ss_pred ecC-CcEEEEECCCc
Q 007234 271 SET-GVCYIWYGQNI 284 (612)
Q Consensus 271 s~d-g~i~iwd~~~~ 284 (612)
+.+ +.|.+|+.+..
T Consensus 328 ~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 328 DDQEGWLEIYRWKDE 342 (365)
T ss_dssp CSSSCEEEEEEEETT
T ss_pred EcCCCeEEEEEEchh
Confidence 874 89999998655
No 158
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.79 E-value=4.8e-17 Score=183.13 Aligned_cols=246 Identities=11% Similarity=0.013 Sum_probs=168.4
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEE
Q 007234 10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (612)
Q Consensus 10 ~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (612)
.++|+|||++++++ ||+|++||+.++++...+.++........+ ....|.|. ++.|
T Consensus 21 ~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~Spd---------g~~l 76 (740)
T 4a5s_A 21 SLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSI-------------NDYSISPD---------GQFI 76 (740)
T ss_dssp CEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCC-------------CEEEECTT---------SSEE
T ss_pred ccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccc-------------cceEECCC---------CCEE
Confidence 45999999999886 999999999999988777765532211111 11233322 7788
Q ss_pred EEEECC---------CcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEE-EecCC
Q 007234 90 VLGTGG---------GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK-FRAST 159 (612)
Q Consensus 90 ~~gs~~---------g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~-~~~~~ 159 (612)
+.++.+ +.+.+||+.+++.. .+ ..|...+...+|||||+.|+.+ .|+.|++||+.+++..+. ..++.
T Consensus 77 ~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l-~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~ 153 (740)
T 4a5s_A 77 LLEYNYVKQWRHSYTASYDIYDLNKRQLI-TE-ERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKE 153 (740)
T ss_dssp EEEEEEEECSSSCEEEEEEEEETTTTEEC-CS-SCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBT
T ss_pred EEEECCeeeEEEccceEEEEEECCCCcEE-Ec-ccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCc
Confidence 888875 66789999999875 33 4577889999999999999888 578999999988875442 22222
Q ss_pred CCe-----------------eEEEECCCCCEEEEeC---C-----------------------------------eEEEE
Q 007234 160 KGI-----------------SCMAVSSDGKMLATAA---G-----------------------------------QLKTF 184 (612)
Q Consensus 160 ~~v-----------------~~l~~spdg~~l~~~~---g-----------------------------------~i~lw 184 (612)
..+ ..+.|||||+.|+.++ + +|++|
T Consensus 154 ~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~ 233 (740)
T 4a5s_A 154 DIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVV 233 (740)
T ss_dssp TTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEE
T ss_pred cceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEE
Confidence 222 3589999999998763 1 58899
Q ss_pred EcCC---Ce--eEEEEe------cCCCCEEEEEEeeCCcEEEEEEcC---CCeEEEEEcCCCc----cccceeeEeecCC
Q 007234 185 NCSD---HK--KMQKFS------GHPGAVRFMTFSDNGKYVLSSAVG---ERYIALWRTDGVK----KQSASCVLAMEHP 246 (612)
Q Consensus 185 d~~~---~~--~~~~~~------~h~~~v~~l~~sp~~~~l~s~s~~---d~~i~vwd~~~~~----~~~~~~~~~~~~~ 246 (612)
|+.+ ++ ....+. +|...+..++|+|||+.++..... +..|.+||+.+++ ......+....+.
T Consensus 234 d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~ 313 (740)
T 4a5s_A 234 NTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTT 313 (740)
T ss_dssp ETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSS
T ss_pred ECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCC
Confidence 9998 73 233443 378889999999999966655322 2379999999876 2211111112222
Q ss_pred cee----EEeEEecCCccCCCCcEEE-EEec-CC--cEEEEECCCccee
Q 007234 247 AVF----MDCRCIDNGGVDDAGLYVL-AISE-TG--VCYIWYGQNIEEL 287 (612)
Q Consensus 247 ~~~----~~~~~~~~~~~~~~~~~l~-t~s~-dg--~i~iwd~~~~~~~ 287 (612)
..+ .....|+ |||+.++ ..+. +| .|++||..+++..
T Consensus 314 ~~v~~~~~~~p~fs-----pDG~~l~~~~s~~~G~~~l~~~~~~~~~~~ 357 (740)
T 4a5s_A 314 GWVGRFRPSEPHFT-----LDGNSFYKIISNEEGYRHICYFQIDKKDCT 357 (740)
T ss_dssp SCSSSSSCCCCEEC-----TTSSEEEEEEECTTSCEEEEEEETTCSSCE
T ss_pred ceEccCcCCCceEc-----CCCCEEEEEEEcCCCceEEEEEECCCCceE
Confidence 221 1234566 9999877 6654 44 6888888776544
No 159
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.78 E-value=2.9e-16 Score=160.80 Aligned_cols=279 Identities=14% Similarity=0.050 Sum_probs=176.0
Q ss_pred EEcCCCCEEEEEeC----CCcEEEEEC--CCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccC
Q 007234 12 SFSPALDYFAICSG----DARIKIWDT--LKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLG 85 (612)
Q Consensus 12 ~fspdg~~las~s~----dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 85 (612)
+..+...++..|+. ++.|.+|++ .+++.......+...+..++|+++
T Consensus 8 ~~~~~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spd--------------------------- 60 (361)
T 3scy_A 8 STTDSELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSAD--------------------------- 60 (361)
T ss_dssp CGGGGEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTT---------------------------
T ss_pred hhCCCceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCC---------------------------
Confidence 34445556666643 567889865 566654332223333344444444
Q ss_pred CcEEEEEECC----CcEEEEEcCC--CeE--EEEeccCCCCCeEEEEEecCCCEEEEEe-cCCcEEEEECCCCceeEE--
Q 007234 86 SSLLVLGTGG----GDVLALAVSA--GQL--KWRLSDCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPLTGSLLGK-- 154 (612)
Q Consensus 86 ~~~l~~gs~~----g~I~vwd~~~--~~~--~~~~~~~h~~~V~~l~~sp~~~~l~s~s-~dg~v~iwd~~~~~~~~~-- 154 (612)
+++|++++.+ |.|.+|++.. +.. +... ..+......+++ +++++++++ .++.|.+|++.....+..
T Consensus 61 g~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~-~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~ 137 (361)
T 3scy_A 61 GKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQ-KTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPAS 137 (361)
T ss_dssp SSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEE-ECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCS
T ss_pred CCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEe-ccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccc
Confidence 7788888875 7899998865 443 2222 234556777887 788877776 578999999875432211
Q ss_pred --Ee--c--------CCCCeeEEEECCCCCEEEEeC---CeEEEEEcCCCe-------e------EEEEecCCCCEEEEE
Q 007234 155 --FR--A--------STKGISCMAVSSDGKMLATAA---GQLKTFNCSDHK-------K------MQKFSGHPGAVRFMT 206 (612)
Q Consensus 155 --~~--~--------~~~~v~~l~~spdg~~l~~~~---g~i~lwd~~~~~-------~------~~~~~~h~~~v~~l~ 206 (612)
+. + +...+.+++|+|||+++++++ +.|++|++.... . ......+...+..++
T Consensus 138 ~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 217 (361)
T 3scy_A 138 DVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLI 217 (361)
T ss_dssp EEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEE
T ss_pred eeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEE
Confidence 11 1 112358899999999776654 799999887543 1 111223445678999
Q ss_pred EeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecC--CcEEEEECC--
Q 007234 207 FSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET--GVCYIWYGQ-- 282 (612)
Q Consensus 207 ~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~d--g~i~iwd~~-- 282 (612)
|+|+|+++++++..++.|.+|++.++....................+.|+ |||++|++++.+ +.|.+|++.
T Consensus 218 ~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~s-----pdg~~l~v~~~~~~~~i~v~~~~~~ 292 (361)
T 3scy_A 218 FNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLS-----PDGKYLYASNRLKADGVAIFKVDET 292 (361)
T ss_dssp ECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEEC-----TTSSEEEEEECSSSCEEEEEEECTT
T ss_pred EcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEEC-----CCCCEEEEECCCCCCEEEEEEEcCC
Confidence 99999988887756899999999866432111111111222233566777 999998777664 899999975
Q ss_pred CcceecccCCceeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCc
Q 007234 283 NIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGV 362 (612)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~ 362 (612)
+++... +. .+.. ...+..++|||||+
T Consensus 293 ~g~~~~--------~~---------------------------------------------~~~~-g~~~~~~~~spdg~ 318 (361)
T 3scy_A 293 NGTLTK--------VG---------------------------------------------YQLT-GIHPRNFIITPNGK 318 (361)
T ss_dssp TCCEEE--------EE---------------------------------------------EEEC-SSCCCEEEECTTSC
T ss_pred CCcEEE--------ee---------------------------------------------EecC-CCCCceEEECCCCC
Confidence 222100 00 0111 12456789999999
Q ss_pred eEeccccceeeecceee
Q 007234 363 LLPMSQSLLKSKRGRYV 379 (612)
Q Consensus 363 ~l~~s~s~d~~~~~w~~ 379 (612)
+|.+++..++.+.+|.+
T Consensus 319 ~l~~~~~~~~~v~v~~~ 335 (361)
T 3scy_A 319 YLLVACRDTNVIQIFER 335 (361)
T ss_dssp EEEEEETTTTEEEEEEE
T ss_pred EEEEEECCCCCEEEEEE
Confidence 98555557889999876
No 160
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.76 E-value=8.7e-17 Score=168.82 Aligned_cols=196 Identities=11% Similarity=0.083 Sum_probs=141.7
Q ss_pred cccceeEEEEcCCCCEEE----EEeCCCcEEEEECCCC--------cE---EEEeeccCCccccccccccccccccccce
Q 007234 4 SNIRDILTSFSPALDYFA----ICSGDARIKIWDTLKG--------QV---QTEFADIASTETTSLYGNRLEREHLSVDY 68 (612)
Q Consensus 4 ~~V~~l~~~fspdg~~la----s~s~dg~i~iwd~~~~--------~~---~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 68 (612)
++|+++ +|+|+|++|| +|+.|++|+|||+.++ +. ...+.+|. ..+
T Consensus 93 ~~v~~l--~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~------------------~~V 152 (434)
T 2oit_A 93 FPIHHL--ALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAG------------------GMV 152 (434)
T ss_dssp SCEEEE--EECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGG------------------GSE
T ss_pred CcccEE--EEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCC------------------Cce
Confidence 356544 9999999999 7788999999998765 11 22233233 345
Q ss_pred eEEEeeecccccccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCC
Q 007234 69 TCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT 148 (612)
Q Consensus 69 ~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~ 148 (612)
.++.|.+.+ +.++++|+.||.|++||++++...... .+|...|++++|+|+|++|++|+.||+|++||++
T Consensus 153 ~~v~~~p~~--------~~~las~s~Dg~v~iwD~~~~~~~~~~-~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~- 222 (434)
T 2oit_A 153 IDMKWNPTV--------PSMVAVCLADGSIAVLQVTETVKVCAT-LPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT- 222 (434)
T ss_dssp EEEEECSSC--------TTEEEEEETTSCEEEEEESSSEEEEEE-ECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-
T ss_pred EEEEECCCC--------CCEEEEEECCCeEEEEEcCCCcceeec-cCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-
Confidence 667776654 678999999999999999998766444 4588999999999999999999999999999998
Q ss_pred CceeEEEecCC-------CCeeEEEECCCCCEEEEeC---C------eEEEEEcCCCe-----eEEEEe-------cCCC
Q 007234 149 GSLLGKFRAST-------KGISCMAVSSDGKMLATAA---G------QLKTFNCSDHK-----KMQKFS-------GHPG 200 (612)
Q Consensus 149 ~~~~~~~~~~~-------~~v~~l~~spdg~~l~~~~---g------~i~lwd~~~~~-----~~~~~~-------~h~~ 200 (612)
++....+..+. ..+.+++|++++.++++.+ | .+++|++...+ ....+. +...
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~ 302 (434)
T 2oit_A 223 LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQ 302 (434)
T ss_dssp CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSC
T ss_pred CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcC
Confidence 66666665432 2789999999998886544 2 39999997642 122221 2223
Q ss_pred CEEEEEEeeCCcEEEEEEcCCCeEEEEEc
Q 007234 201 AVRFMTFSDNGKYVLSSAVGERYIALWRT 229 (612)
Q Consensus 201 ~v~~l~~sp~~~~l~s~s~~d~~i~vwd~ 229 (612)
+-..+.+.++.+++++++.....|.+...
T Consensus 303 ~~~~~~~l~dw~l~~v~s~~s~dv~vl~~ 331 (434)
T 2oit_A 303 HHYYLSYIEEWDLVLAASAASTEVSILAR 331 (434)
T ss_dssp CCEEEEEEGGGTEEEEEETTCSBCEEEEE
T ss_pred cceeeehhccCCEEEEecCCCCceeEEEe
Confidence 33334444777777777755666666654
No 161
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.75 E-value=2.5e-16 Score=159.77 Aligned_cols=145 Identities=17% Similarity=0.170 Sum_probs=113.5
Q ss_pred CcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEE-EEecCCcEEEEECCCCceeEEEecCC-----
Q 007234 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIY-SAGADGMVCEIDPLTGSLLGKFRAST----- 159 (612)
Q Consensus 86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~-s~s~dg~v~iwd~~~~~~~~~~~~~~----- 159 (612)
+.++++++.++.|.+||+.+++.+..+..+....+..++|+|+|+.++ +++.++.|.+||+.+++.+..+....
T Consensus 11 ~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~ 90 (349)
T 1jmx_B 11 HEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEV 90 (349)
T ss_dssp CEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEE
T ss_pred CEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccc
Confidence 678899999999999999999988776433323688999999998765 45578999999999998887776433
Q ss_pred -CCeeEEEECCCCCEEEEeC--------------CeEEEEEcCCCe---eEEEEecCCCCEEEEEEeeCCcEEEEEEcCC
Q 007234 160 -KGISCMAVSSDGKMLATAA--------------GQLKTFNCSDHK---KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE 221 (612)
Q Consensus 160 -~~v~~l~~spdg~~l~~~~--------------g~i~lwd~~~~~---~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d 221 (612)
..+.+++|+|||+++++++ +.|++||+.+++ .+..+. +...+.+++|+|+|+ +++++ .
T Consensus 91 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l~~~~-~- 166 (349)
T 1jmx_B 91 GRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-LYVAG-P- 166 (349)
T ss_dssp EECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-EEEES-S-
T ss_pred cccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-EEEcc-C-
Confidence 2378899999999998876 799999998853 334444 344688899999999 55543 3
Q ss_pred CeEEEEEcCCCccc
Q 007234 222 RYIALWRTDGVKKQ 235 (612)
Q Consensus 222 ~~i~vwd~~~~~~~ 235 (612)
.|.+||+.+++..
T Consensus 167 -~i~~~d~~~~~~~ 179 (349)
T 1jmx_B 167 -DIYKMDVKTGKYT 179 (349)
T ss_dssp -SEEEECTTTCCEE
T ss_pred -cEEEEeCCCCcee
Confidence 3999999887643
No 162
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.74 E-value=7.2e-16 Score=158.22 Aligned_cols=191 Identities=15% Similarity=0.086 Sum_probs=131.5
Q ss_pred CcEEEEEECCCcEEEEEcC-CCeEEEEeccCCCCCeEEEEEecCCCE--EEEEe-------------cCCcEEEEECC-C
Q 007234 86 SSLLVLGTGGGDVLALAVS-AGQLKWRLSDCHPGGVSAISFATHGSC--IYSAG-------------ADGMVCEIDPL-T 148 (612)
Q Consensus 86 ~~~l~~gs~~g~I~vwd~~-~~~~~~~~~~~h~~~V~~l~~sp~~~~--l~s~s-------------~dg~v~iwd~~-~ 148 (612)
++++++++.+ .|.+|++. +++..........+.+.+++|+|+|++ +++++ .++++.+|++. .
T Consensus 51 g~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~ 129 (365)
T 1jof_A 51 RKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSET 129 (365)
T ss_dssp SSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTT
T ss_pred CCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCC
Confidence 7788888887 99999997 777643221111123567899999994 45553 68999999997 4
Q ss_pred CceeEEEec----CCCCeeEEEECCCCCEEEEeC---CeEEEEEcC-CCeeE--EEEe--cCCCCEEEEEEeeCCcEEEE
Q 007234 149 GSLLGKFRA----STKGISCMAVSSDGKMLATAA---GQLKTFNCS-DHKKM--QKFS--GHPGAVRFMTFSDNGKYVLS 216 (612)
Q Consensus 149 ~~~~~~~~~----~~~~v~~l~~spdg~~l~~~~---g~i~lwd~~-~~~~~--~~~~--~h~~~v~~l~~sp~~~~l~s 216 (612)
++....+.. +...+.+++|+|||+++++++ +.|++||+. +++.. ..+. .|...+..++|+|+|+++++
T Consensus 130 g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v 209 (365)
T 1jof_A 130 GKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYA 209 (365)
T ss_dssp CCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEE
T ss_pred CcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEE
Confidence 665544432 445789999999999888764 699999998 77643 3343 24567899999999999988
Q ss_pred EEcCCCeEEEEEcCC--Ccccc-ceeeEeecCC--c-e-------eEEeEE-ecCCccCCCCcEEEEEecC-C-----cE
Q 007234 217 SAVGERYIALWRTDG--VKKQS-ASCVLAMEHP--A-V-------FMDCRC-IDNGGVDDAGLYVLAISET-G-----VC 276 (612)
Q Consensus 217 ~s~~d~~i~vwd~~~--~~~~~-~~~~~~~~~~--~-~-------~~~~~~-~~~~~~~~~~~~l~t~s~d-g-----~i 276 (612)
++..++.|.+|+++. ++... ...+..+... . . ....+. ++ |||++|++++.+ + .|
T Consensus 210 ~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~s-----pdG~~l~v~~~~~~~~~~~~i 284 (365)
T 1jof_A 210 LMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALT-----FSGKYMFASSRANKFELQGYI 284 (365)
T ss_dssp EETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEEC-----TTSSEEEEEEEESSTTSCCEE
T ss_pred EECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEEC-----CCCCEEEEECCCCCCCCCCeE
Confidence 775578999998763 43210 0011111111 0 1 345566 77 999998877653 2 89
Q ss_pred EEEECC
Q 007234 277 YIWYGQ 282 (612)
Q Consensus 277 ~iwd~~ 282 (612)
.+|++.
T Consensus 285 ~v~~~~ 290 (365)
T 1jof_A 285 AGFKLR 290 (365)
T ss_dssp EEEEEC
T ss_pred EEEEEC
Confidence 999975
No 163
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.73 E-value=6.8e-15 Score=145.27 Aligned_cols=240 Identities=15% Similarity=0.198 Sum_probs=165.4
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEE
Q 007234 10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (612)
Q Consensus 10 ~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (612)
+++++|+|+++++...++.|.+||.. ++.+..+..... ..++. .....+++.+.+ +.++
T Consensus 34 ~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~-----------~~~~~-~~p~~i~~~~~~--------g~l~ 92 (286)
T 1q7f_A 34 GVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGK-----------RDSQL-LYPNRVAVVRNS--------GDII 92 (286)
T ss_dssp EEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSS-----------STTCB-SSEEEEEEETTT--------TEEE
T ss_pred eEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCC-----------Ccccc-cCceEEEEEcCC--------CeEE
Confidence 45999999988888889999999987 666666542110 00111 123344443222 4444
Q ss_pred EEEEC-CCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEe--cCCCCeeEEE
Q 007234 90 VLGTG-GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR--ASTKGISCMA 166 (612)
Q Consensus 90 ~~gs~-~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~--~~~~~v~~l~ 166 (612)
++... ++.|.+|| .+++.+..+...+...+.+++++|+|+.+++...++.|.+||. .++.+..+. .+...+.+++
T Consensus 93 v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~p~~i~ 170 (286)
T 1q7f_A 93 VTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVV 170 (286)
T ss_dssp EEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEE
T ss_pred EEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcC-CCCEEEEeCCCCccCCcEEEE
Confidence 44433 78899999 5677666664445567899999999987777778899999995 466666664 2344689999
Q ss_pred ECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecC--CCCEEEEEEeeCCcEEEEEEcCCC-eEEEEEcCCCccccceeeE
Q 007234 167 VSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGH--PGAVRFMTFSDNGKYVLSSAVGER-YIALWRTDGVKKQSASCVL 241 (612)
Q Consensus 167 ~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h--~~~v~~l~~sp~~~~l~s~s~~d~-~i~vwd~~~~~~~~~~~~~ 241 (612)
++|+|+++++.. +.|++||. .++.+..+..+ ...+..++++|+|+++++.. .++ .|.+|+... +.. ..+
T Consensus 171 ~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~-~~~~~i~~~~~~g-~~~---~~~ 244 (286)
T 1q7f_A 171 VNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADN-HNNFNLTIFTQDG-QLI---SAL 244 (286)
T ss_dssp ECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEEC-SSSCEEEEECTTS-CEE---EEE
T ss_pred ECCCCCEEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeC-CCCEEEEEECCCC-CEE---EEE
Confidence 999999877765 79999997 45566666543 36789999999998777765 565 999999643 322 122
Q ss_pred eecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCc
Q 007234 242 AMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (612)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~ 284 (612)
...........++++ ++|+++++ +.|+.|++|+....
T Consensus 245 ~~~~~~~~~~~i~~~-----~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 245 ESKVKHAQCFDVALM-----DDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp EESSCCSCEEEEEEE-----TTTEEEEE-ETTTEEEEEECSCC
T ss_pred cccCCCCcceeEEEC-----CCCcEEEE-CCCCeEEEEEcccc
Confidence 222222234456676 89987666 67999999987553
No 164
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.71 E-value=3e-16 Score=162.34 Aligned_cols=235 Identities=9% Similarity=0.027 Sum_probs=155.0
Q ss_pred cceeEEEEcCCCCEEEEEeCC---CcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccc
Q 007234 6 IRDILTSFSPALDYFAICSGD---ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (612)
Q Consensus 6 V~~l~~~fspdg~~las~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (612)
+..+ +|||||++||.+... ..|.+||..+++......+.........|+++
T Consensus 38 ~~~~--~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spd------------------------ 91 (396)
T 3c5m_A 38 FYQK--CFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTD------------------------ 91 (396)
T ss_dssp TTSC--CBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTT------------------------
T ss_pred eecC--cCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCC------------------------
Confidence 4445 899999999877653 36888899988765433222111111333443
Q ss_pred ccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEE-------------------EEEecCCCEEEEE-----ecC
Q 007234 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSA-------------------ISFATHGSCIYSA-----GAD 138 (612)
Q Consensus 83 ~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~-------------------l~~sp~~~~l~s~-----s~d 138 (612)
++.|+.++.++.|++||+.+++..... ..+...... +.|+|+++.++.+ ..+
T Consensus 92 ---g~~l~~~~~~~~l~~~d~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~ 167 (396)
T 3c5m_A 92 ---ERAFFYVKNELNLMKVDLETLEEQVIY-TVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPT 167 (396)
T ss_dssp ---SSEEEEEETTTEEEEEETTTCCEEEEE-ECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCC
T ss_pred ---CCEEEEEEcCCcEEEEECCCCCcEEEE-ecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCc
Confidence 788999999999999999988765333 323332222 3456666665543 356
Q ss_pred CcEEEEECCCCceeEEEecCCCCeeEEEECC-CCCEEEEeC--------CeEEEEEcCCCeeEEEEecC--CCCEEEEEE
Q 007234 139 GMVCEIDPLTGSLLGKFRASTKGISCMAVSS-DGKMLATAA--------GQLKTFNCSDHKKMQKFSGH--PGAVRFMTF 207 (612)
Q Consensus 139 g~v~iwd~~~~~~~~~~~~~~~~v~~l~~sp-dg~~l~~~~--------g~i~lwd~~~~~~~~~~~~h--~~~v~~l~~ 207 (612)
..|++||+.+++..... .+...+..+.|+| +++.++..+ ..|++||+.+++.. .+..+ ...+..+.|
T Consensus 168 ~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~ 245 (396)
T 3c5m_A 168 CRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAEGESCTHEFW 245 (396)
T ss_dssp EEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCTTEEEEEEEE
T ss_pred ceEEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCCCccccceEE
Confidence 68999999988765554 3566789999999 788766543 26889998766533 33333 235788999
Q ss_pred eeCCcEEEEEEcCC----CeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCC-CCcEEEEEe-----------
Q 007234 208 SDNGKYVLSSAVGE----RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDD-AGLYVLAIS----------- 271 (612)
Q Consensus 208 sp~~~~l~s~s~~d----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~t~s----------- 271 (612)
+|+|++|+.++..+ +.|.+||+.+++.. .+... +.. . ..|+ | ||+++++++
T Consensus 246 spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~---~l~~~--~~~--~-~~~s-----~~dg~~l~~~~~~~p~~~~~~~ 312 (396)
T 3c5m_A 246 IPDGSAMAYVSYFKGQTDRVIYKANPETLENE---EVMVM--PPC--S-HLMS-----NFDGSLMVGDGCDAPVDVADAD 312 (396)
T ss_dssp CTTSSCEEEEEEETTTCCEEEEEECTTTCCEE---EEEEC--CSE--E-EEEE-----CSSSSEEEEEECCC--------
T ss_pred CCCCCEEEEEecCCCCccceEEEEECCCCCeE---EeeeC--CCC--C-CCcc-----CCCCceEEEecCCcceeecccc
Confidence 99999877765322 45999999887643 22221 221 2 5565 7 999888765
Q ss_pred -----cCCcEEEEECCCcc
Q 007234 272 -----ETGVCYIWYGQNIE 285 (612)
Q Consensus 272 -----~dg~i~iwd~~~~~ 285 (612)
.++.|++||+.+++
T Consensus 313 ~~~~~~~~~i~~~d~~~~~ 331 (396)
T 3c5m_A 313 SYNIENDPFLYVLNTKAKS 331 (396)
T ss_dssp --CCCCCCEEEEEETTTTB
T ss_pred ccccCCCCcEEEEecccCc
Confidence 24689999987765
No 165
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.71 E-value=2.3e-16 Score=177.05 Aligned_cols=275 Identities=13% Similarity=0.059 Sum_probs=177.3
Q ss_pred CcEEEEEECCCcEEEEEcCCCeEEEEeccCCCC---CeEEEEEecCCCEEEEEec---------CCcEEEEECCCCceeE
Q 007234 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPG---GVSAISFATHGSCIYSAGA---------DGMVCEIDPLTGSLLG 153 (612)
Q Consensus 86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~---~V~~l~~sp~~~~l~s~s~---------dg~v~iwd~~~~~~~~ 153 (612)
+. ++..+.+|+|++||+.+++....+ ..|.. .+.+++|||||++|++++. ++.|++||+.+++.+.
T Consensus 27 g~-~~~~~~d~~i~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~ 104 (719)
T 1z68_A 27 QE-YLHQSADNNIVLYNIETGQSYTIL-SNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVR 104 (719)
T ss_dssp SE-EEEECTTSCEEEEESSSCCEEEEE-CHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC
T ss_pred Ce-EEEEcCCCCEEEEEcCCCcEEEEE-ccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCcccc
Confidence 53 455557999999999999876444 33433 4899999999999998876 7899999999887631
Q ss_pred EEecCCCCeeEEEECCCCCEEEEeC-CeEEEEEcCCCeeEEEE-ecCCCCE-----------------EEEEEeeCCcEE
Q 007234 154 KFRASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKF-SGHPGAV-----------------RFMTFSDNGKYV 214 (612)
Q Consensus 154 ~~~~~~~~v~~l~~spdg~~l~~~~-g~i~lwd~~~~~~~~~~-~~h~~~v-----------------~~l~~sp~~~~l 214 (612)
... ....+.+++|||||+.|+.+. +.|++||+.+++..+.. .++...| .+++|||||++|
T Consensus 105 ~~~-l~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~l 183 (719)
T 1z68_A 105 GNE-LPRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFL 183 (719)
T ss_dssp SSC-CCSSBCCEEECSSTTCEEEEETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEE
T ss_pred cee-cCcccccceECCCCCEEEEEECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEE
Confidence 111 124688999999999999888 99999999988765422 2333323 479999999999
Q ss_pred EEEEcCCC---------------------------------eEEEEEcCCCccccceee---EeecCCceeEEeEEecCC
Q 007234 215 LSSAVGER---------------------------------YIALWRTDGVKKQSASCV---LAMEHPAVFMDCRCIDNG 258 (612)
Q Consensus 215 ~s~s~~d~---------------------------------~i~vwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 258 (612)
++++..++ .|++||+.+++......+ ..+..+...+..+.|+
T Consensus 184 a~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S-- 261 (719)
T 1z68_A 184 AYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWV-- 261 (719)
T ss_dssp EEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEES--
T ss_pred EEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEe--
Confidence 98874221 788999988753100000 1122345556677787
Q ss_pred ccCCCCcEEEEEecC----CcEEEEE----CCCcceecccC----CceeEee----cccccCCCCcccchhhhc--cccc
Q 007234 259 GVDDAGLYVLAISET----GVCYIWY----GQNIEELRNTK----ATKILSS----SEDVNSKSQKSATAAIFA--AKLQ 320 (612)
Q Consensus 259 ~~~~~~~~l~t~s~d----g~i~iwd----~~~~~~~~~~~----~~~~~~~----~~~~~s~~~~~~~~~i~~--~~~d 320 (612)
||++++++.... ..|.+|| ..+++...... .....+. ....++|+++ .++. +..+
T Consensus 262 ---pD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~----~l~~~~~~~~ 334 (719)
T 1z68_A 262 ---TDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAI----SYYKIFSDKD 334 (719)
T ss_dssp ---SSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSS----CEEEEEECTT
T ss_pred ---CCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCC----eEEEEEEccC
Confidence 998877775433 2488899 87776554331 1111111 0223778877 3332 2233
Q ss_pred ceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccc----eeeecceeee
Q 007234 321 DIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSL----LKSKRGRYVQ 380 (612)
Q Consensus 321 ~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~----d~~~~~w~~~ 380 (612)
+ ..++++.+-.. .....+..+...+..+.++ ||+.+.+++.. ++..++|.+.
T Consensus 335 g-----~~~l~~~~~~~--~~~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~ 390 (719)
T 1z68_A 335 G-----YKHIHYIKDTV--ENAIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRIS 390 (719)
T ss_dssp S-----CEEEEEESSCS--TTCEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEE
T ss_pred C-----ceEEEEEECCC--CceEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEe
Confidence 3 12333332111 1133455566668888888 88888566654 4778888763
No 166
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.70 E-value=4.4e-15 Score=150.02 Aligned_cols=239 Identities=8% Similarity=0.081 Sum_probs=168.2
Q ss_pred ccceeEEEEcCCCCEEEEEeCC------------------------CcEEEEECCCCcEEEEeeccCCcccccccccccc
Q 007234 5 NIRDILTSFSPALDYFAICSGD------------------------ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLE 60 (612)
Q Consensus 5 ~V~~l~~~fspdg~~las~s~d------------------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~ 60 (612)
.+..+ +++|+|+++++.+.+ ++|.+||..+++.+..+...
T Consensus 25 ~v~~v--a~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~-------------- 88 (329)
T 3fvz_A 25 QVSGV--ALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKN-------------- 88 (329)
T ss_dssp CEEEE--EECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTT--------------
T ss_pred CceEE--EECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCC--------------
Confidence 45445 999999999888777 47999999999987655311
Q ss_pred ccccccceeEEEeeecccccccccCCcEEEEEECCCcEEEEEcCCCe-EEEEec--------cCCCCCeEEEEEec-CCC
Q 007234 61 REHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQ-LKWRLS--------DCHPGGVSAISFAT-HGS 130 (612)
Q Consensus 61 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~-~~~~~~--------~~h~~~V~~l~~sp-~~~ 130 (612)
+ ......+++.+. +.++++...++.|++||..... .+..+. .++-....+++|+| ++.
T Consensus 89 --~-~~~p~gia~d~~---------g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~ 156 (329)
T 3fvz_A 89 --L-FYLPHGLSIDTD---------GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGA 156 (329)
T ss_dssp --T-CSSEEEEEECTT---------SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCC
T ss_pred --c-cCCceEEEECCC---------CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCe
Confidence 0 011223333322 6777777888999999986553 333432 24455789999999 787
Q ss_pred EEEEEe-cCCcEEEEECCCCceeEEEecCC----------CCeeEEEECCC-CCEEEEeC--CeEEEEEcCCCeeEEEEe
Q 007234 131 CIYSAG-ADGMVCEIDPLTGSLLGKFRAST----------KGISCMAVSSD-GKMLATAA--GQLKTFNCSDHKKMQKFS 196 (612)
Q Consensus 131 ~l~s~s-~dg~v~iwd~~~~~~~~~~~~~~----------~~v~~l~~spd-g~~l~~~~--g~i~lwd~~~~~~~~~~~ 196 (612)
.+++.+ .++.|++|| .+++.+..+.... ..+..++++|+ +.++++.. +.|++||..+++.+..+.
T Consensus 157 lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~ 235 (329)
T 3fvz_A 157 VFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIK 235 (329)
T ss_dssp EEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred EEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEe
Confidence 777776 689999999 5777777764322 23899999999 66555554 799999999899888884
Q ss_pred --cCCCCEEEEEEeeCCcEEEEEE------cCCCeEEEEEcCCCccccceeeEee---cCCceeEEeEEecCCccCCCCc
Q 007234 197 --GHPGAVRFMTFSDNGKYVLSSA------VGERYIALWRTDGVKKQSASCVLAM---EHPAVFMDCRCIDNGGVDDAGL 265 (612)
Q Consensus 197 --~h~~~v~~l~~sp~~~~l~s~s------~~d~~i~vwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 265 (612)
.+...+..++|+| +..+.+.+ ..+..|++|+..+++.. ..+ .........++++ ++|.
T Consensus 236 ~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~-----~~~~~~~~~~~~p~~ia~~-----~dG~ 304 (329)
T 3fvz_A 236 HASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEII-----DVFKPVRKHFDMPHDIVAS-----EDGT 304 (329)
T ss_dssp CTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEE-----EEECCSSSCCSSEEEEEEC-----TTSE
T ss_pred ccccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEE-----EEEcCCCCccCCeeEEEEC-----CCCC
Confidence 4566788999999 43333222 12448999999888644 222 1233345667776 9998
Q ss_pred EEEEEecCCcEEEEECCC
Q 007234 266 YVLAISETGVCYIWYGQN 283 (612)
Q Consensus 266 ~l~t~s~dg~i~iwd~~~ 283 (612)
.+++...++.|++|++..
T Consensus 305 lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 305 VYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp EEEEESSSCCEEEEEEEE
T ss_pred EEEEECCCCEEEEEeCCc
Confidence 888888899999999754
No 167
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.68 E-value=5.2e-15 Score=164.37 Aligned_cols=250 Identities=9% Similarity=0.036 Sum_probs=162.4
Q ss_pred CcccceeEEEEcCCCCEEEEE--eCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeee-cccc
Q 007234 3 SSNIRDILTSFSPALDYFAIC--SGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLS-VDRK 79 (612)
Q Consensus 3 s~~V~~l~~~fspdg~~las~--s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~-~~~~ 79 (612)
+..|+.+ +||+++-++++. +.+++..||....+.....+..+...+..... ........|.. ++
T Consensus 23 ~~~~~~~--~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~---------~~~~~~~~~~~SPD-- 89 (662)
T 3azo_A 23 SGRPACV--GAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVF---------EYSGFPWAGVPRPA-- 89 (662)
T ss_dssp CSCCEEE--EEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGG---------GTCCCCEEEECCSS--
T ss_pred CCcccee--EEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCcccccccc---------ccCCccceeeeecC--
Confidence 3456555 899887777777 55889999986545445555544332221100 00111234541 33
Q ss_pred cccccCCcE-EEEEEC-CCcEEEEEcC--C-CeEEEEeccC----CCCCeEEEEEecCCCEEEEEecC----------Cc
Q 007234 80 KKRKLGSSL-LVLGTG-GGDVLALAVS--A-GQLKWRLSDC----HPGGVSAISFATHGSCIYSAGAD----------GM 140 (612)
Q Consensus 80 ~~~~~~~~~-l~~gs~-~g~I~vwd~~--~-~~~~~~~~~~----h~~~V~~l~~sp~~~~l~s~s~d----------g~ 140 (612)
++. |+.++. ++.|.++++. + +.. ..+... |...+.+++|+|||+.|++++.| ..
T Consensus 90 ------g~~~la~~~~~~~~l~~~~~~~~g~~~~-~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~ 162 (662)
T 3azo_A 90 ------GGPLLVFTHFGDQRLYAFEPDAPGGAVP-RPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRF 162 (662)
T ss_dssp ------SSCEEEEEBTTTCCEEEECTTSTTCCCC-EECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEE
T ss_pred ------CCeEEEEEECCCCeEEEEcCCCCCCCCC-EeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeE
Confidence 555 555443 5667778776 3 443 244321 66788999999999999998877 58
Q ss_pred EEEEECCC------CceeEEEe-cCCCCeeEEEECCCCCEEEEeC--C--------eEEEEEcC-CC---eeEEEEecCC
Q 007234 141 VCEIDPLT------GSLLGKFR-ASTKGISCMAVSSDGKMLATAA--G--------QLKTFNCS-DH---KKMQKFSGHP 199 (612)
Q Consensus 141 v~iwd~~~------~~~~~~~~-~~~~~v~~l~~spdg~~l~~~~--g--------~i~lwd~~-~~---~~~~~~~~h~ 199 (612)
|++||+.+ ++. ..+. .+...+..++|+|||++|+.++ + .|++||+. ++ +......+|.
T Consensus 163 i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~ 241 (662)
T 3azo_A 163 LAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPE 241 (662)
T ss_dssp EEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETT
T ss_pred EEEEECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCC
Confidence 99999987 544 4444 5556788899999999998765 2 79999999 57 4444445567
Q ss_pred CCEEEEEEeeCCcEEEEEEcCCC--eEEEEEcCCCccccceeeEeecCCcee--------EEeEEecCCccCCCCcEEEE
Q 007234 200 GAVRFMTFSDNGKYVLSSAVGER--YIALWRTDGVKKQSASCVLAMEHPAVF--------MDCRCIDNGGVDDAGLYVLA 269 (612)
Q Consensus 200 ~~v~~l~~sp~~~~l~s~s~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~t 269 (612)
..+..+.|+|||++++++. .++ .|.+||+.+++.. ....++... ...+.++ ++++++++
T Consensus 242 ~~~~~~~~spdg~l~~~~~-~~~~~~l~~~~~~~~~~~-----~l~~~~~~~~~p~w~~~~~~~~~~-----~~~~~~~~ 310 (662)
T 3azo_A 242 EAIAQAEWAPDGSLIVATD-RTGWWNLHRVDPATGAAT-----QLCRREEEFAGPLWTPGMRWFAPL-----ANGLIAVV 310 (662)
T ss_dssp BCEEEEEECTTSCEEEEEC-TTSSCEEEEECTTTCCEE-----ESSCCSSBSSCCCCSTTCCSEEEC-----TTSCEEEE
T ss_pred ceEcceEECCCCeEEEEEC-CCCCeEEEEEECCCCcee-----ecccccccccCccccccCceEeEe-----CCCEEEEE
Confidence 8899999999999666554 677 5666666555422 111111111 2345565 88999999
Q ss_pred EecCCcEEEE--ECCCcc
Q 007234 270 ISETGVCYIW--YGQNIE 285 (612)
Q Consensus 270 ~s~dg~i~iw--d~~~~~ 285 (612)
++. |.+++| |..+++
T Consensus 311 ~~~-~~~~l~~~d~~~~~ 327 (662)
T 3azo_A 311 HGK-GAAVLGILDPESGE 327 (662)
T ss_dssp EBS-SSCEEEEEETTTTE
T ss_pred EEc-CccEEEEEECCCCc
Confidence 998 999999 555444
No 168
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.68 E-value=7.4e-16 Score=168.54 Aligned_cols=183 Identities=9% Similarity=-0.027 Sum_probs=130.3
Q ss_pred CcEEEEEEC-CCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEec---CCcEEEEECCC---CceeEEEecC
Q 007234 86 SSLLVLGTG-GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA---DGMVCEIDPLT---GSLLGKFRAS 158 (612)
Q Consensus 86 ~~~l~~gs~-~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~---dg~v~iwd~~~---~~~~~~~~~~ 158 (612)
++.|+.++. +|++.||++.+++.. ++...+...+.+++|+|| +.+++++. +...++|.+.. +... .+..
T Consensus 33 G~~la~~s~~~g~~~lw~~~~g~~~-~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~- 108 (582)
T 3o4h_A 33 GDKLLVVGFSEGSVNAYLYDGGETV-KLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEA- 108 (582)
T ss_dssp TTEEEEEEEETTEEEEEEEETTEEE-ECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCE-ECTT-
T ss_pred CCeEEEEEccCCceeEEEEcCCCcE-eeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCccc-cccC-
Confidence 778888776 999999999777664 454444468999999999 77777765 45556654432 3222 3332
Q ss_pred CCCeeEEEECCCCCE--EEEeC-CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCC----CeEEEEEcCC
Q 007234 159 TKGISCMAVSSDGKM--LATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE----RYIALWRTDG 231 (612)
Q Consensus 159 ~~~v~~l~~spdg~~--l~~~~-g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d----~~i~vwd~~~ 231 (612)
...+...+|+|||+. ++++. +.+.+||+.+++.......+ . .+++|+|||+++++++ .+ +.|++||+.+
T Consensus 109 ~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~-~--~~~~~spDG~~la~~~-~~~~~~~~i~~~d~~~ 184 (582)
T 3o4h_A 109 VKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLP-G--FGFVSDIRGDLIAGLG-FFGGGRVSLFTSNLSS 184 (582)
T ss_dssp SCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEES-S--CEEEEEEETTEEEEEE-EEETTEEEEEEEETTT
T ss_pred CCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCC-C--ceEEECCCCCEEEEEE-EcCCCCeEEEEEcCCC
Confidence 224456788888864 44444 66779999998765554433 3 7899999999999776 35 6899999988
Q ss_pred CccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCC--cEEEEECCCccee
Q 007234 232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG--VCYIWYGQNIEEL 287 (612)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg--~i~iwd~~~~~~~ 287 (612)
++.. .+..+........|+ |||++|+++..+| .|++||+.+++..
T Consensus 185 g~~~------~l~~~~~~~~~~~~S-----pDG~~l~~~~~~~~~~i~~~d~~~~~~~ 231 (582)
T 3o4h_A 185 GGLR------VFDSGEGSFSSASIS-----PGMKVTAGLETAREARLVTVDPRDGSVE 231 (582)
T ss_dssp CCCE------EECCSSCEEEEEEEC-----TTSCEEEEEECSSCEEEEEECTTTCCEE
T ss_pred CCce------EeecCCCccccceEC-----CCCCEEEEccCCCeeEEEEEcCCCCcEE
Confidence 7643 233344445677787 9999999888888 8999999877653
No 169
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.66 E-value=2.4e-14 Score=144.60 Aligned_cols=242 Identities=12% Similarity=0.108 Sum_probs=164.9
Q ss_pred CCCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccc
Q 007234 1 MGSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (612)
Q Consensus 1 ~~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~ 80 (612)
|.+..|.++ +|+|++..++..+.++.++.| .++....+..+... ..++.|.+.
T Consensus 3 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~------------------~~~~~~~~~---- 55 (333)
T 2dg1_A 3 MSQQDLPTL--FYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQ------------------LEGLNFDRQ---- 55 (333)
T ss_dssp ---CCCCBC--CSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCC------------------EEEEEECTT----
T ss_pred cccccccee--eecCCccceeEEeecccCccc---ccceeEEEeccCcc------------------ccCcEECCC----
Confidence 346678767 999999888877888999999 34555555433222 234555432
Q ss_pred ccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecC----CcEEEEECCCCceeEEEe
Q 007234 81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD----GMVCEIDPLTGSLLGKFR 156 (612)
Q Consensus 81 ~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~d----g~v~iwd~~~~~~~~~~~ 156 (612)
+.+++++..++.|.+||+.+++..... ..+...+.+++++|+|++++++..+ +.|.+||..+++....+.
T Consensus 56 -----g~l~~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~ 129 (333)
T 2dg1_A 56 -----GQLFLLDVFEGNIFKINPETKEIKRPF-VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIE 129 (333)
T ss_dssp -----SCEEEEETTTCEEEEECTTTCCEEEEE-ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEEC
T ss_pred -----CCEEEEECCCCEEEEEeCCCCcEEEEe-eCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEc
Confidence 677777888899999999988765433 2456789999999999877777666 689999998776554443
Q ss_pred --cCCCCeeEEEECCCCCEEEEeC--------CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEE
Q 007234 157 --ASTKGISCMAVSSDGKMLATAA--------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIAL 226 (612)
Q Consensus 157 --~~~~~v~~l~~spdg~~l~~~~--------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~v 226 (612)
.....+.+++++|+|+++++.. +.|+.+|..+++... +..+...+..++|+|+|+.++.+...++.|.+
T Consensus 130 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~ 208 (333)
T 2dg1_A 130 DLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLWVTETTANRLHR 208 (333)
T ss_dssp SSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEEEEEGGGTEEEE
T ss_pred cCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEEEEeCCCCeEEE
Confidence 2345789999999999888765 356666666554433 33334457899999999877666546789999
Q ss_pred EEcCC-Cccccc---eeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECC
Q 007234 227 WRTDG-VKKQSA---SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (612)
Q Consensus 227 wd~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~ 282 (612)
|++.+ +..... ........ ......++++ ++|++.++...++.|.+||..
T Consensus 209 ~d~~~~g~~~~~~~~~~~~~~~~-~~~~~~i~~d-----~~G~l~v~~~~~~~v~~~d~~ 262 (333)
T 2dg1_A 209 IALEDDGVTIQPFGATIPYYFTG-HEGPDSCCID-----SDDNLYVAMYGQGRVLVFNKR 262 (333)
T ss_dssp EEECTTSSSEEEEEEEEEEECCS-SSEEEEEEEB-----TTCCEEEEEETTTEEEEECTT
T ss_pred EEecCCCcCcccccceEEEecCC-CCCCCceEEC-----CCCCEEEEEcCCCEEEEECCC
Confidence 99964 221100 00111111 1345566776 889888877778999999873
No 170
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.64 E-value=2.5e-14 Score=146.29 Aligned_cols=291 Identities=10% Similarity=0.041 Sum_probs=186.4
Q ss_pred CCCCEEEEEe------CCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcE
Q 007234 15 PALDYFAICS------GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (612)
Q Consensus 15 pdg~~las~s------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (612)
|+++++.... .|+.|.+||..+++.+..+.....+ .+.|+++ +++
T Consensus 13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spd---------------------------g~~ 63 (361)
T 2oiz_A 13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSND---------------------------GKK 63 (361)
T ss_dssp CGGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTT---------------------------SSE
T ss_pred CCCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCC---------------------------CCE
Confidence 3677666553 3679999999999988877643322 3444444 777
Q ss_pred EEEEEC----------CCcEEEEEcCCCeEEEEeccC-----CCCCeEEEEEecCCCEEEEEec--CCcEEEEECCCCce
Q 007234 89 LVLGTG----------GGDVLALAVSAGQLKWRLSDC-----HPGGVSAISFATHGSCIYSAGA--DGMVCEIDPLTGSL 151 (612)
Q Consensus 89 l~~gs~----------~g~I~vwd~~~~~~~~~~~~~-----h~~~V~~l~~sp~~~~l~s~s~--dg~v~iwd~~~~~~ 151 (612)
+++++. ++.|.+||+.+++.+.++... +......++|+|+|++|++++. +++|.+||+.+++.
T Consensus 64 lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~ 143 (361)
T 2oiz_A 64 IYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDY 143 (361)
T ss_dssp EEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEE
T ss_pred EEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcE
Confidence 888763 566999999999887766421 2345778999999999999874 58999999999988
Q ss_pred eEE-EecCCCCeeEEEECCCC-CEEEEeC--CeEEEEEcCC-CeeEEE------EecCCCCEEEEEEeeCCcEEEEEEcC
Q 007234 152 LGK-FRASTKGISCMAVSSDG-KMLATAA--GQLKTFNCSD-HKKMQK------FSGHPGAVRFMTFSDNGKYVLSSAVG 220 (612)
Q Consensus 152 ~~~-~~~~~~~v~~l~~spdg-~~l~~~~--g~i~lwd~~~-~~~~~~------~~~h~~~v~~l~~sp~~~~l~s~s~~ 220 (612)
+.. +... ....+.+.|++ ..+++.+ |.+.+|+... ++.... +..+..++ .+.++|++..++..+ .
T Consensus 144 ~~~~i~~~--~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~-~ 219 (361)
T 2oiz_A 144 VEDVTAAA--GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVS-Y 219 (361)
T ss_dssp EEEEGGGT--TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEB-T
T ss_pred EEEEecCC--CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEe-C
Confidence 877 5532 23446677876 3444333 8888888865 554422 22222332 344578887777776 6
Q ss_pred CCeEEEEEcCCCccccceeeEeec-------CCcee---EEeEEecCCccCCCCcEEEEEec-----------CCcEEEE
Q 007234 221 ERYIALWRTDGVKKQSASCVLAME-------HPAVF---MDCRCIDNGGVDDAGLYVLAISE-----------TGVCYIW 279 (612)
Q Consensus 221 d~~i~vwd~~~~~~~~~~~~~~~~-------~~~~~---~~~~~~~~~~~~~~~~~l~t~s~-----------dg~i~iw 279 (612)
++.+.++|+...... ...... ..... ...+.++ ++++.++++.. ++.|.+|
T Consensus 220 ~~~v~v~d~~~~~~~---~~~~~~~~~~~~~~~~~~p~g~~~~a~~-----~dg~~lyv~~~~~~~~~~~~~~~~~v~vi 291 (361)
T 2oiz_A 220 YGNVYSADFSGDEVK---VDGPWSLLNDEDKAKNWVPGGYNLVGLH-----RASGRMYVFMHPDGKEGTHKFPAAEIWVM 291 (361)
T ss_dssp TSEEEEEECSSSSCE---EEEEEESCCHHHHHTTCEECCSSCEEEE-----TTTTEEEEEEESSCCTTCTTCCCSEEEEE
T ss_pred CCeEEEEEecCCCce---ecccccccCccccccccccCCeeEEEEe-----cCCCeEEEEEccCCCcccccCCCceEEEE
Confidence 899999998765422 111100 00000 1124555 88888777654 3489999
Q ss_pred ECCCcceecccCCceeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccC--ceEEEeeccCCCeEEEEe
Q 007234 280 YGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLK--PSFQKILVNSGEDINLNC 357 (612)
Q Consensus 280 d~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~--~~~~~~~~h~~~v~~l~~ 357 (612)
|..+++.+..+.... .....++|+++ .+++++. +.+..+| .... ....++..+...-..+++
T Consensus 292 D~~t~~~v~~i~~~~---p~~ia~spdg~----~l~v~n~-~~v~v~D--------~~t~~l~~~~~i~~~G~~P~~~~~ 355 (361)
T 2oiz_A 292 DTKTKQRVARIPGRD---ALSMTIDQQRN----LMLTLDG-GNVNVYD--------ISQPEPKLLRTIEGAAEASLQVQF 355 (361)
T ss_dssp ETTTTEEEEEEECTT---CCEEEEETTTT----EEEEECS-SCEEEEE--------CSSSSCEEEEEETTSCSSEEEEEE
T ss_pred ECCCCcEEEEEecCC---eeEEEECCCCC----EEEEeCC-CeEEEEE--------CCCCcceeeEEeccCCCCcEEEEe
Confidence 999999887665443 22223688888 5555553 4333332 2222 344455455666788999
Q ss_pred cCCCc
Q 007234 358 SQDGV 362 (612)
Q Consensus 358 S~dg~ 362 (612)
+|||.
T Consensus 356 ~p~G~ 360 (361)
T 2oiz_A 356 HPVGG 360 (361)
T ss_dssp CCCSC
T ss_pred cCCCC
Confidence 99986
No 171
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.63 E-value=3.9e-14 Score=146.14 Aligned_cols=218 Identities=13% Similarity=0.095 Sum_probs=154.8
Q ss_pred EEEECCCCcEEEEeeccCCcccc-----ccccccccccccccceeEEEeeecccccccccCCcEEEEEEC-CCc--EEEE
Q 007234 30 KIWDTLKGQVQTEFADIASTETT-----SLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG-GGD--VLAL 101 (612)
Q Consensus 30 ~iwd~~~~~~~~~~~~~~~~~~~-----~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~-~g~--I~vw 101 (612)
..+|..+|..+..+..+...... ..|+++ ++.|+.++. +|. |.+|
T Consensus 13 ~~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpD---------------------------g~~l~~~~~~~g~~~l~~~ 65 (388)
T 3pe7_A 13 TYQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRD---------------------------GSKLLFGGAFDGPWNYYLL 65 (388)
T ss_dssp EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTT---------------------------SCEEEEEECTTSSCEEEEE
T ss_pred EEecCCCCcceEEecCCcccccchhhcCccCCCC---------------------------CCEEEEEEcCCCCceEEEE
Confidence 34588888888888766543333 444544 777887777 664 8899
Q ss_pred EcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEEE--ECCCCCEEEEe--
Q 007234 102 AVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMA--VSSDGKMLATA-- 177 (612)
Q Consensus 102 d~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~--~spdg~~l~~~-- 177 (612)
|+.+++.. .+..++...+.++.|+|||+.|+.++.++.|++||+.+++....+..+...+.... ++|++++++..
T Consensus 66 d~~~g~~~-~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~ 144 (388)
T 3pe7_A 66 DLNTQVAT-QLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEI 144 (388)
T ss_dssp ETTTCEEE-ECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEE
T ss_pred eCCCCceE-EeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccc
Confidence 99998876 44455666666788999999999999999999999999988777776665554444 48999998742
Q ss_pred --------------------C--CeEEEEEcCCCeeEEEEecCCCCEEEEEEee-CCcEEEEEEcC-----CCeEEEEEc
Q 007234 178 --------------------A--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSD-NGKYVLSSAVG-----ERYIALWRT 229 (612)
Q Consensus 178 --------------------~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp-~~~~l~s~s~~-----d~~i~vwd~ 229 (612)
. +.|++||+.+++.. .+..+...+..+.|+| ||+.++.++.. ...|.++|+
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~-~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~ 223 (388)
T 3pe7_A 145 RREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGEST-VILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINE 223 (388)
T ss_dssp EGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEE-EEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEET
T ss_pred cCcccccccccchhhhhhccCCcceEEEEECCCCceE-EeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeC
Confidence 1 57999999998654 4455677899999999 99988877632 236777887
Q ss_pred CCCccccceeeEeecCC-ceeEEeEEecCCccCCCCcEEEEEec-CC----cEEEEECCCcce
Q 007234 230 DGVKKQSASCVLAMEHP-AVFMDCRCIDNGGVDDAGLYVLAISE-TG----VCYIWYGQNIEE 286 (612)
Q Consensus 230 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~t~s~-dg----~i~iwd~~~~~~ 286 (612)
.++... .+ ..+. ...+....|+ |||+.|+..+. ++ .|++||+.+++.
T Consensus 224 ~~~~~~---~l--~~~~~~~~~~~~~~s-----pdg~~l~~~~~~~~~~~~~l~~~d~~~g~~ 276 (388)
T 3pe7_A 224 DGTNMR---KV--KTHAEGESCTHEFWV-----PDGSALVYVSYLKGSPDRFIYSADPETLEN 276 (388)
T ss_dssp TSCCCE---ES--CCCCTTEEEEEEEEC-----TTSSCEEEEEEETTCCCEEEEEECTTTCCE
T ss_pred CCCceE---Ee--eeCCCCcccccceEC-----CCCCEEEEEecCCCCCcceEEEEecCCCce
Confidence 665432 11 1122 1344456676 99998766544 22 399999988764
No 172
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.63 E-value=5.5e-13 Score=143.69 Aligned_cols=233 Identities=9% Similarity=-0.010 Sum_probs=166.0
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEE
Q 007234 13 FSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLG 92 (612)
Q Consensus 13 fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~g 92 (612)
.+|.+.++++...+++|.++|..+++.+.++.... .+..+.|+++ +++++++
T Consensus 163 ~d~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~-~p~~v~~SpD---------------------------Gr~lyv~ 214 (567)
T 1qks_A 163 WDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSAS---------------------------GRYLFVI 214 (567)
T ss_dssp CCGGGEEEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTT---------------------------SCEEEEE
T ss_pred cCCCceEEEEeCCCCeEEEEECCCCeEEEEEeCCC-CccceEECCC---------------------------CCEEEEE
Confidence 34445566677779999999999999998886322 2223344444 8889999
Q ss_pred ECCCcEEEEEcC--CCeEEEEeccCCCCCeEEEEEe----cCCCEEEEEe-cCCcEEEEECCCCceeEEEecC-------
Q 007234 93 TGGGDVLALAVS--AGQLKWRLSDCHPGGVSAISFA----THGSCIYSAG-ADGMVCEIDPLTGSLLGKFRAS------- 158 (612)
Q Consensus 93 s~~g~I~vwd~~--~~~~~~~~~~~h~~~V~~l~~s----p~~~~l~s~s-~dg~v~iwd~~~~~~~~~~~~~------- 158 (612)
+.+|.|.+||+. +++.+.++.. ......++|+ |||+++++++ .+++|.++|..+.+.+..+...
T Consensus 215 ~~dg~V~viD~~~~t~~~v~~i~~--G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~ 292 (567)
T 1qks_A 215 GRDGKVNMIDLWMKEPTTVAEIKI--GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQ 292 (567)
T ss_dssp ETTSEEEEEETTSSSCCEEEEEEC--CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTC
T ss_pred cCCCeEEEEECCCCCCcEeEEEec--CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccc
Confidence 999999999996 7887777643 3457899999 6999988776 4589999999999998877532
Q ss_pred ----CCCeeEEEECCCCCEEEEeC---CeEEEEEcCCCee--EEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEc
Q 007234 159 ----TKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKK--MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRT 229 (612)
Q Consensus 159 ----~~~v~~l~~spdg~~l~~~~---g~i~lwd~~~~~~--~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~ 229 (612)
...+..+..++++..++... |.|.++|..+.+. +..+ ........+.|+|+|+++++++..++.|.++|+
T Consensus 293 ~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i-~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~ 371 (567)
T 1qks_A 293 EYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEI-SAERFLHDGGLDGSHRYFITAANARNKLVVIDT 371 (567)
T ss_dssp CEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEET
T ss_pred cccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeee-eccccccCceECCCCCEEEEEeCCCCeEEEEEC
Confidence 12678899999877666553 8999999987643 2233 234457788999999999888767889999999
Q ss_pred CCCccccceee-EeecCCceeEEeEEecCCccCCCCcEEEEEe--cCCcEEEEECCC
Q 007234 230 DGVKKQSASCV-LAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS--ETGVCYIWYGQN 283 (612)
Q Consensus 230 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s--~dg~i~iwd~~~ 283 (612)
.+++......+ ....|+..... ++. |++..+.+.+ .++.|.++|..+
T Consensus 372 ~t~kl~~~i~vgg~~Phpg~g~~--~~~-----p~~g~v~~t~~~g~~~Vsvid~~~ 421 (567)
T 1qks_A 372 KEGKLVAIEDTGGQTPHPGRGAN--FVH-----PTFGPVWATSHMGDDSVALIGTDP 421 (567)
T ss_dssp TTTEEEEEEECSSSSBCCTTCEE--EEE-----TTTEEEEEEEBSSSSEEEEEECCT
T ss_pred CCCcEEEEEeccCcCCCCcccee--eEC-----CCCCcEEEeCCCCCCeEEEecCCC
Confidence 98875421111 11233332222 234 7755554443 368999999887
No 173
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.61 E-value=9.1e-14 Score=156.37 Aligned_cols=197 Identities=13% Similarity=0.089 Sum_probs=140.2
Q ss_pred eeEEEeeecccccccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCC-----eEEEEEecCCCEEEEEecC----
Q 007234 68 YTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGG-----VSAISFATHGSCIYSAGAD---- 138 (612)
Q Consensus 68 ~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~-----V~~l~~sp~~~~l~s~s~d---- 138 (612)
...+.|.+. +.+++++ +|+|++||+.++++...+ .+|... ..++.|||||++|+.++.+
T Consensus 19 ~~~~~w~~d---------g~~~~~~--~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~ 86 (740)
T 4a5s_A 19 LYSLRWISD---------HEYLYKQ--ENNILVFNAEYGNSSVFL-ENSTFDEFGHSINDYSISPDGQFILLEYNYVKQW 86 (740)
T ss_dssp CCCEEECSS---------SEEEEEE--TTEEEEEETTTCCEEEEE-CTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECS
T ss_pred ccccEECCC---------CcEEEEc--CCcEEEEECCCCceEEEE-echhhhhhcccccceEECCCCCEEEEEECCeeeE
Confidence 345677765 5667775 999999999999986443 555432 2458899999999998876
Q ss_pred -----CcEEEEECCCCceeEEEecCCCCeeEEEECCCCCEEEEeC-CeEEEEEcCCCeeEEE-EecCCCCE---------
Q 007234 139 -----GMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQK-FSGHPGAV--------- 202 (612)
Q Consensus 139 -----g~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~-g~i~lwd~~~~~~~~~-~~~h~~~v--------- 202 (612)
+.+.+||+.+++... +..+...+...+|||||+.||.+. +.|++||+.+++..+. ..++...+
T Consensus 87 r~~~~~~~~~~d~~~~~~~~-l~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~ 165 (740)
T 4a5s_A 87 RHSYTASYDIYDLNKRQLIT-EERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVY 165 (740)
T ss_dssp SSCEEEEEEEEETTTTEECC-SSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHH
T ss_pred EEccceEEEEEECCCCcEEE-cccCCCcceeeEECCCCCEEEEEECCeEEEEECCCCceEEEcCCCCccceecCcccccc
Confidence 566799999987643 555667899999999999999887 8999999988875432 22333333
Q ss_pred --------EEEEEeeCCcEEEEEEcCCC-----------------------------------eEEEEEcCC---Ccccc
Q 007234 203 --------RFMTFSDNGKYVLSSAVGER-----------------------------------YIALWRTDG---VKKQS 236 (612)
Q Consensus 203 --------~~l~~sp~~~~l~s~s~~d~-----------------------------------~i~vwd~~~---~~~~~ 236 (612)
..+.|||||++|+..+..++ .|++||+.+ ++..
T Consensus 166 ~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~- 244 (740)
T 4a5s_A 166 EEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNA- 244 (740)
T ss_dssp HHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCC-
T ss_pred cchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcc-
Confidence 34899999999998753222 477788877 5311
Q ss_pred ceeeEeec------CCceeEEeEEecCCccCCCCcEEEEEec----CCcEEEEECCCcc
Q 007234 237 ASCVLAME------HPAVFMDCRCIDNGGVDDAGLYVLAISE----TGVCYIWYGQNIE 285 (612)
Q Consensus 237 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~t~s~----dg~i~iwd~~~~~ 285 (612)
....+. .+...+..+.|+ |||+.++.... +..|.+||+.+++
T Consensus 245 --~~~~l~~~~~~~~~~~~~~~~~ws-----pdg~~~~~~~~r~~~~~~i~~~d~~tg~ 296 (740)
T 4a5s_A 245 --TSIQITAPASMLIGDHYLCDVTWA-----TQERISLQWLRRIQNYSVMDICDYDESS 296 (740)
T ss_dssp --CEEEECCCHHHHTSCEEEEEEEEE-----ETTEEEEEEEESSTTEEEEEEEEEETTT
T ss_pred --eEEEecCCccCCCCCeEEEEEEEe-----CCCeEEEEEeCCCCCEEEEEEEECCCCc
Confidence 011121 144556667787 99997766543 2379999998887
No 174
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.60 E-value=2.4e-13 Score=139.09 Aligned_cols=237 Identities=12% Similarity=0.080 Sum_probs=161.3
Q ss_pred EEEEcCCCCEEEEEe----------CCCcEEEEECCCCcEEEEeeccC------CccccccccccccccccccceeEEEe
Q 007234 10 LTSFSPALDYFAICS----------GDARIKIWDTLKGQVQTEFADIA------STETTSLYGNRLEREHLSVDYTCMKW 73 (612)
Q Consensus 10 ~~~fspdg~~las~s----------~dg~i~iwd~~~~~~~~~~~~~~------~~~~~~~~s~~~~~~~~~~~~~~~~w 73 (612)
.++|||||++++++. .++.|.+||..+++.+.++.... .....+.++++
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spd--------------- 118 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTD--------------- 118 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTT---------------
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCC---------------
Confidence 349999999998876 26789999999999988876431 22333444444
Q ss_pred eecccccccccCCcEEEEEEC--CCcEEEEEcCCCeEEEE-eccCCCCCeEEEEEecCC-CEEEEEecCCcEEEEECCC-
Q 007234 74 LSVDRKKKRKLGSSLLVLGTG--GGDVLALAVSAGQLKWR-LSDCHPGGVSAISFATHG-SCIYSAGADGMVCEIDPLT- 148 (612)
Q Consensus 74 ~~~~~~~~~~~~~~~l~~gs~--~g~I~vwd~~~~~~~~~-~~~~h~~~V~~l~~sp~~-~~l~s~s~dg~v~iwd~~~- 148 (612)
+++++++.. ++.|.+||+.+++.+.. +.. .....+.+.|++ ..+++.+.||.+.+|+...
T Consensus 119 ------------g~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~---~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~ 183 (361)
T 2oiz_A 119 ------------GKFIVLQNASPATSIGIVDVAKGDYVEDVTAA---AGCWSVIPQPNRPRSFMTICGDGGLLTINLGED 183 (361)
T ss_dssp ------------SSEEEEEEESSSEEEEEEETTTTEEEEEEGGG---TTEEEEEECTTSSSEEEEEETTSSEEEEEECTT
T ss_pred ------------CCEEEEECCCCCCeEEEEECCCCcEEEEEecC---CCcceeEEcCCCCeeEEEECCCCcEEEEEECCC
Confidence 778888874 57799999999998876 532 223446677866 5688889999999999865
Q ss_pred CceeEEE------ecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCe--eEEEEec------CC----CCEEEEEEe
Q 007234 149 GSLLGKF------RASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHK--KMQKFSG------HP----GAVRFMTFS 208 (612)
Q Consensus 149 ~~~~~~~------~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~--~~~~~~~------h~----~~v~~l~~s 208 (612)
++..... .....+ ..+.++|++..++..+ +.++++|+.... ....+.- +. .....++|+
T Consensus 184 g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~ 262 (361)
T 2oiz_A 184 GKVASQSRSKQMFSVKDDP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLH 262 (361)
T ss_dssp SSEEEEEECCCCSCTTTSC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEE
T ss_pred CcEeeeccccceEcCCCCc-eEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEe
Confidence 5544222 111222 2333456776666555 899999987553 2222221 01 111137899
Q ss_pred eCCcEEEEEEc----------CCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEE
Q 007234 209 DNGKYVLSSAV----------GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYI 278 (612)
Q Consensus 209 p~~~~l~s~s~----------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~i 278 (612)
|+++.++++.. .++.|.+||+.+.+.. ..+..+. ...+.++ |||++|++++. +.|.+
T Consensus 263 ~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v-----~~i~~~~--p~~ia~s-----pdg~~l~v~n~-~~v~v 329 (361)
T 2oiz_A 263 RASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRV-----ARIPGRD--ALSMTID-----QQRNLMLTLDG-GNVNV 329 (361)
T ss_dssp TTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEE-----EEEECTT--CCEEEEE-----TTTTEEEEECS-SCEEE
T ss_pred cCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEE-----EEEecCC--eeEEEEC-----CCCCEEEEeCC-CeEEE
Confidence 99888877642 1348999999988644 3333333 5566777 99999998887 99999
Q ss_pred EECCCc--ceeccc
Q 007234 279 WYGQNI--EELRNT 290 (612)
Q Consensus 279 wd~~~~--~~~~~~ 290 (612)
||..++ +.+..+
T Consensus 330 ~D~~t~~l~~~~~i 343 (361)
T 2oiz_A 330 YDISQPEPKLLRTI 343 (361)
T ss_dssp EECSSSSCEEEEEE
T ss_pred EECCCCcceeeEEe
Confidence 999999 877654
No 175
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.60 E-value=3.6e-13 Score=135.91 Aligned_cols=223 Identities=11% Similarity=0.027 Sum_probs=152.7
Q ss_pred CcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCc-eeEEEe---------cCCCCeeEE
Q 007234 96 GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS-LLGKFR---------ASTKGISCM 165 (612)
Q Consensus 96 g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~-~~~~~~---------~~~~~v~~l 165 (612)
+.|.+||..+++.......++-....+++++|+|+.+++.+.++.|++||..... .+..+. .+...+..+
T Consensus 69 ~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~i 148 (329)
T 3fvz_A 69 DTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDV 148 (329)
T ss_dssp CCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEE
T ss_pred CcEEEEECCCCeEEeccCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEE
Confidence 4799999999998876655566789999999999988888889999999975432 555552 233468999
Q ss_pred EECC-CCCEEEEeC---CeEEEEEcCCCeeEEEEecC----------CCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCC
Q 007234 166 AVSS-DGKMLATAA---GQLKTFNCSDHKKMQKFSGH----------PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (612)
Q Consensus 166 ~~sp-dg~~l~~~~---g~i~lwd~~~~~~~~~~~~h----------~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~ 231 (612)
+++| +|.++++.+ +.|++|| .+++.+..+... -.....++++|++..++.+...++.|++|+..+
T Consensus 149 a~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~ 227 (329)
T 3fvz_A 149 AVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDT 227 (329)
T ss_dssp EECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTT
T ss_pred EEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCC
Confidence 9999 888888873 7999999 567777766422 234789999999444444455789999999986
Q ss_pred CccccceeeEeecCCceeEEeEEecCCccCC------CCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCC
Q 007234 232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDD------AGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSK 305 (612)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~ 305 (612)
++.. ..............+.++ | +|+..++...++.|++|+..+++.+..+.+
T Consensus 228 G~~~---~~~~~~~~~~~~~~~~~~-----pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~------------- 286 (329)
T 3fvz_A 228 KEFV---REIKHASFGRNVFAISYI-----PGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKP------------- 286 (329)
T ss_dssp CCEE---EEECCTTTTTCEEEEEEE-----TTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECC-------------
T ss_pred CcEE---EEEeccccCCCcceeeec-----CCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcC-------------
Confidence 6543 112112222223345555 5 223222223345788888777665432110
Q ss_pred CCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceeee
Q 007234 306 SQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (612)
Q Consensus 306 ~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~~ 380 (612)
...+......++++|||.++ ++...++.+++|+..
T Consensus 287 ---------------------------------------~~~~~~~p~~ia~~~dG~ly-vad~~~~~I~~~~~~ 321 (329)
T 3fvz_A 287 ---------------------------------------VRKHFDMPHDIVASEDGTVY-IGDAHTNTVWKFTLT 321 (329)
T ss_dssp ---------------------------------------SSSCCSSEEEEEECTTSEEE-EEESSSCCEEEEEEE
T ss_pred ---------------------------------------CCCccCCeeEEEECCCCCEE-EEECCCCEEEEEeCC
Confidence 01223357889999999777 888888999999874
No 176
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.60 E-value=3.1e-13 Score=132.50 Aligned_cols=230 Identities=10% Similarity=0.071 Sum_probs=165.4
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCcEEEEeeccC-CccccccccccccccccccceeEEEeeecccccccccCCcEEEEEE
Q 007234 15 PALDYFAICSGDARIKIWDTLKGQVQTEFADIA-STETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGT 93 (612)
Q Consensus 15 pdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs 93 (612)
..+++|++++.++.|.+||.++|+.+.++..+. ..+.+..+.++ +++++ +
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pd---------------------------G~ilv--s 53 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKA---------------------------GEILF--S 53 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTT---------------------------SCEEE--E
T ss_pred CCCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCC---------------------------CCEEE--e
Confidence 346789999999999999999999999987543 12222222222 66666 5
Q ss_pred CCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEec-CCcEEEEECCCCceeEEEecCC------CCeeEEE
Q 007234 94 GGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA-DGMVCEIDPLTGSLLGKFRAST------KGISCMA 166 (612)
Q Consensus 94 ~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~-dg~v~iwd~~~~~~~~~~~~~~------~~v~~l~ 166 (612)
.++.|..||. +|+.++++..++...+.++.+.++|+.+++.+. ++.|..+|. +|+.+..+.... .....++
T Consensus 54 ~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~ 131 (276)
T 3no2_A 54 YSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQIN 131 (276)
T ss_dssp CBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCE
T ss_pred CCCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCce
Confidence 5778999999 899998886544457899999999999999887 788888885 788877765321 2445678
Q ss_pred ECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeec
Q 007234 167 VSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME 244 (612)
Q Consensus 167 ~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~ 244 (612)
+.++|+++++.. +.|..||.+ |+.+.++..+ ..+.++.+.++|..+++++ .++.|..+|..+++.. ..+.
T Consensus 132 ~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~-~~~~v~~~d~~tG~~~-----w~~~ 203 (276)
T 3no2_A 132 KNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLS-GTPFSSAFLDNGDCLVACG-DAHCFVQLNLESNRIV-----RRVN 203 (276)
T ss_dssp ECTTSCEEEEETTTTEEEEECTT-SCEEEEEECS-SCCCEEEECTTSCEEEECB-TTSEEEEECTTTCCEE-----EEEE
T ss_pred ECCCCCEEEEecCCCEEEEECCC-CCEEEEEECC-CCccceeEcCCCCEEEEeC-CCCeEEEEeCcCCcEE-----EEec
Confidence 899999999887 899999998 9999988765 3455677889999888775 5778999999988754 2222
Q ss_pred C------CceeEEeEEecCCccCCCCcEEEEEecC--------CcEEEEEC-CCcceec
Q 007234 245 H------PAVFMDCRCIDNGGVDDAGLYVLAISET--------GVCYIWYG-QNIEELR 288 (612)
Q Consensus 245 ~------~~~~~~~~~~~~~~~~~~~~~l~t~s~d--------g~i~iwd~-~~~~~~~ 288 (612)
. .-..+...... ++|..+++.... +..+++++ .+++.+.
T Consensus 204 ~~~~~~~~l~~~~~~~~~-----~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W 257 (276)
T 3no2_A 204 ANDIEGVQLFFVAQLFPL-----QNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVW 257 (276)
T ss_dssp GGGSBSCCCSEEEEEEEC-----TTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEE
T ss_pred CCCCCCccccccccceEc-----CCCCEEEEeccCccccccccCCceEEEECCCCCEEE
Confidence 1 11224455554 788888776421 23345555 4555544
No 177
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.59 E-value=5.8e-13 Score=149.07 Aligned_cols=236 Identities=12% Similarity=0.076 Sum_probs=158.8
Q ss_pred EEEEcCCCCEEEEEeCCC-----cEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccccc
Q 007234 10 LTSFSPALDYFAICSGDA-----RIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (612)
Q Consensus 10 ~~~fspdg~~las~s~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (612)
.++|||||++||.++.++ +|++||+.+|+.......+ .. ...+.|.+.
T Consensus 129 ~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~------------------~~~~~wspD-------- 181 (710)
T 2xdw_A 129 GYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VK------------------FSCMAWTHD-------- 181 (710)
T ss_dssp EEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-EC------------------SCCEEECTT--------
T ss_pred EEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cc------------------cceEEEEeC--------
Confidence 459999999999876533 8999999999876532211 11 223455443
Q ss_pred CCcEEEEEECCCc----------------EEEEEcCCCeEE--EEe-ccCCCCCeEEEEEecCCCEEEEEec-----CCc
Q 007234 85 GSSLLVLGTGGGD----------------VLALAVSAGQLK--WRL-SDCHPGGVSAISFATHGSCIYSAGA-----DGM 140 (612)
Q Consensus 85 ~~~~l~~gs~~g~----------------I~vwd~~~~~~~--~~~-~~~h~~~V~~l~~sp~~~~l~s~s~-----dg~ 140 (612)
++.|+.++.++. |++|++.+++.. ..+ ...|...+.++.|+|||++|+.++. +..
T Consensus 182 -g~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~ 260 (710)
T 2xdw_A 182 -GKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNR 260 (710)
T ss_dssp -SSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCE
T ss_pred -CCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccE
Confidence 677888777655 999999887621 111 1235566889999999999887764 568
Q ss_pred EEEEECCC------Cc-eeEEEecCCCCeeEEEECCCCCEEEEeC------CeEEEEEcCCCe--eEEEEecCCC--CEE
Q 007234 141 VCEIDPLT------GS-LLGKFRASTKGISCMAVSSDGKMLATAA------GQLKTFNCSDHK--KMQKFSGHPG--AVR 203 (612)
Q Consensus 141 v~iwd~~~------~~-~~~~~~~~~~~v~~l~~spdg~~l~~~~------g~i~lwd~~~~~--~~~~~~~h~~--~v~ 203 (612)
|++||+.+ +. ....+..+...+.. .|+|+|+.++..+ +.|.+||+.++. ....+..|.. .+.
T Consensus 261 l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~ 339 (710)
T 2xdw_A 261 LWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLE 339 (710)
T ss_dssp EEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEE
T ss_pred EEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEE
Confidence 99999976 43 45666666665554 4889998877654 379999998874 2345555544 678
Q ss_pred EEEEeeCCcEEEEEEcCCCe--EEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEE-e---cCCcEE
Q 007234 204 FMTFSDNGKYVLSSAVGERY--IALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAI-S---ETGVCY 277 (612)
Q Consensus 204 ~l~~sp~~~~l~s~s~~d~~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~-s---~dg~i~ 277 (612)
.+.|++++.++++.. .|+. |.+|++.+++.. ..+..+...+..+.++ +++..++.. + ..++|+
T Consensus 340 ~~~~~~~~~lv~~~~-~~g~~~l~~~~~~~g~~~-----~~l~~~~~~v~~~~~s-----~d~~~l~~~~ss~~~P~~i~ 408 (710)
T 2xdw_A 340 WVACVRSNFLVLCYL-HDVKNTLQLHDLATGALL-----KIFPLEVGSVVGYSGQ-----KKDTEIFYQFTSFLSPGIIY 408 (710)
T ss_dssp EEEEETTTEEEEEEE-ETTEEEEEEEETTTCCEE-----EEECCCSSEEEEEECC-----TTCSEEEEEEECSSCCCEEE
T ss_pred EEEEEcCCEEEEEEE-ECCEEEEEEEECCCCCEE-----EecCCCCceEEEEecC-----CCCCEEEEEEeCCCCCCEEE
Confidence 899987777666665 6774 556676555422 2233334445555665 777665543 2 257899
Q ss_pred EEECCCcc
Q 007234 278 IWYGQNIE 285 (612)
Q Consensus 278 iwd~~~~~ 285 (612)
.||+.+++
T Consensus 409 ~~d~~tg~ 416 (710)
T 2xdw_A 409 HCDLTKEE 416 (710)
T ss_dssp EEETTSSS
T ss_pred EEECCCCc
Confidence 99998876
No 178
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.58 E-value=4.7e-13 Score=130.56 Aligned_cols=237 Identities=8% Similarity=-0.047 Sum_probs=155.5
Q ss_pred EEEEcCCCCEEE-EEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcE
Q 007234 10 LTSFSPALDYFA-ICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (612)
Q Consensus 10 ~~~fspdg~~la-s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (612)
+++++|+|++++ +.+.++.|.+||..++........... ....+.+.+. +.+
T Consensus 28 ~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~------------------~p~~i~~~~~---------g~l 80 (270)
T 1rwi_B 28 GVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLY------------------QPQGLAVDGA---------GTV 80 (270)
T ss_dssp EEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCC------------------SCCCEEECTT---------CCE
T ss_pred ceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcC------------------CcceeEECCC---------CCE
Confidence 459999999777 446788999999765543221111111 1223333322 554
Q ss_pred EEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEEEEC
Q 007234 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVS 168 (612)
Q Consensus 89 l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~s 168 (612)
+++..++.|.+||...+... .+.......+.+++++++|+.+++...++.|.+||..+.............+.+++++
T Consensus 81 -~v~~~~~~i~~~d~~~~~~~-~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~ 158 (270)
T 1rwi_B 81 -YVTDFNNRVVTLAAGSNNQT-VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVD 158 (270)
T ss_dssp -EEEETTTEEEEECTTCSCCE-ECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEEC
T ss_pred -EEEcCCCEEEEEeCCCceEe-eeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEe
Confidence 44444888999998876543 3322333678999999999877777778899999865554332222233467899999
Q ss_pred CCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCC
Q 007234 169 SDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP 246 (612)
Q Consensus 169 pdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 246 (612)
|+|+++++.. +.|.+||..+.........+...+.++++.++|..+++.. .++.|.+|+....... ......
T Consensus 159 ~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~-~~~~v~~~~~~~~~~~-----~~~~~~ 232 (270)
T 1rwi_B 159 NSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEH-NTNQVVKLLAGSTTST-----VLPFTG 232 (270)
T ss_dssp TTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEET-TTSCEEEECTTCSCCE-----ECCCCS
T ss_pred CCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEEC-CCCcEEEEcCCCCcce-----eeccCC
Confidence 9999777665 7999999887765443333446788999999997666553 6788999998765322 111111
Q ss_pred ceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcce
Q 007234 247 AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE 286 (612)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~ 286 (612)
......+++. ++|+.+++...++.|++|+....+.
T Consensus 233 ~~~p~~i~~~-----~~g~l~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 233 LNTPLAVAVD-----SDRTVYVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp CSCEEEEEEC-----TTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred CCCceeEEEC-----CCCCEEEEECCCCEEEEEcCCCccc
Confidence 1334566676 8899888888899999999876554
No 179
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.57 E-value=6.6e-13 Score=131.69 Aligned_cols=231 Identities=12% Similarity=0.076 Sum_probs=153.6
Q ss_pred EEEEcCCCC-EEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcE
Q 007234 10 LTSFSPALD-YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (612)
Q Consensus 10 ~~~fspdg~-~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (612)
+++|+|+|+ +++++..++.|..||..++ ...+..+...+. ++.+.+. +.+
T Consensus 32 g~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~------------------~l~~~~d---------g~l 82 (296)
T 3e5z_A 32 GPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQN------------------GHCLNKQ---------GHL 82 (296)
T ss_dssp EEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEE------------------EEEECTT---------CCE
T ss_pred CCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcc------------------eeeECCC---------CcE
Confidence 459999998 7778888999999999887 555544333333 3333322 666
Q ss_pred EEEEECCCcEEEEEcCCCeEEEEecc---CCCCCeEEEEEecCCCEEEEE----e-------------cCCcEEEEECCC
Q 007234 89 LVLGTGGGDVLALAVSAGQLKWRLSD---CHPGGVSAISFATHGSCIYSA----G-------------ADGMVCEIDPLT 148 (612)
Q Consensus 89 l~~gs~~g~I~vwd~~~~~~~~~~~~---~h~~~V~~l~~sp~~~~l~s~----s-------------~dg~v~iwd~~~ 148 (612)
+++...++.|.+||..+++....... .....+.+++++|+|+++++. + ..+.|..+|..
T Consensus 83 ~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~- 161 (296)
T 3e5z_A 83 IACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD- 161 (296)
T ss_dssp EEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-
T ss_pred EEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-
Confidence 66655668899999988876432211 112356789999999988773 2 13466666655
Q ss_pred CceeEEEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcC-CCee---EEEEecCCCCEEEEEEeeCCcEEEEEEcCCC
Q 007234 149 GSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCS-DHKK---MQKFSGHPGAVRFMTFSDNGKYVLSSAVGER 222 (612)
Q Consensus 149 ~~~~~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~-~~~~---~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~ 222 (612)
++ +..+..+......++|+|+|+.+++.. +.|++||+. +++. ...+..+...+.+++++++|+++++. ++
T Consensus 162 g~-~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~---~~ 237 (296)
T 3e5z_A 162 GT-LSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA---GD 237 (296)
T ss_dssp SC-EEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE---TT
T ss_pred CC-EEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc---CC
Confidence 44 344455566789999999999986655 799999997 4544 33343355567789999999866554 67
Q ss_pred eEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcce
Q 007234 223 YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE 286 (612)
Q Consensus 223 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~ 286 (612)
.|.+|+.. ++.. ..+..+.. +..++|. .++++.|++++.+ .+.-++.++.+.
T Consensus 238 ~v~~~~~~-g~~~-----~~~~~~~~-~~~~~f~----~~d~~~L~v~t~~-~l~~~~~~~~~~ 289 (296)
T 3e5z_A 238 GVHVLTPD-GDEL-----GRVLTPQT-TSNLCFG----GPEGRTLYMTVST-EFWSIETNVRGL 289 (296)
T ss_dssp EEEEECTT-SCEE-----EEEECSSC-CCEEEEE----STTSCEEEEEETT-EEEEEECSCCBC
T ss_pred eEEEECCC-CCEE-----EEEECCCC-ceeEEEE----CCCCCEEEEEcCC-eEEEEEcccccc
Confidence 89999986 3322 22333333 4555663 2888888888876 455556655544
No 180
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.56 E-value=2.7e-13 Score=140.05 Aligned_cols=242 Identities=11% Similarity=0.066 Sum_probs=150.9
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCcccc---ccccccccccccccceeE------EEeeecccccc
Q 007234 11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETT---SLYGNRLEREHLSVDYTC------MKWLSVDRKKK 81 (612)
Q Consensus 11 ~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~---~~~s~~~~~~~~~~~~~~------~~w~~~~~~~~ 81 (612)
+.|||||++|+.++.++.|.+||+.+++....+..+...... ++|... .... ..|.+.
T Consensus 86 ~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~--------~~~~~~~~~~~~~spd----- 152 (396)
T 3c5m_A 86 GFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDC--------TKLVGIEILKRDWQPL----- 152 (396)
T ss_dssp CEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTS--------SEEEEEEEEGGGCCCC-----
T ss_pred ceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccC--------CccccccccccccCCC-----
Confidence 489999999999999999999999998876655433221100 111100 0000 011111
Q ss_pred cccCCcEEEEE-----ECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEec-CCCEEEEEecC------CcEEEEECCCC
Q 007234 82 RKLGSSLLVLG-----TGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGAD------GMVCEIDPLTG 149 (612)
Q Consensus 82 ~~~~~~~l~~g-----s~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp-~~~~l~s~s~d------g~v~iwd~~~~ 149 (612)
++.++.+ ..+..|.+||+.+++..... .+...+..+.|+| +++.|+.++.+ ..|.+||+..+
T Consensus 153 ----g~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~--~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~ 226 (396)
T 3c5m_A 153 ----TSWEKFAEFYHTNPTCRLIKVDIETGELEVIH--QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGS 226 (396)
T ss_dssp ----CSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE--EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSC
T ss_pred ----CcceeeeeeccCCCcceEEEEECCCCcEEeec--cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCC
Confidence 3333333 34556999999988765433 3667899999999 78877766543 46889998765
Q ss_pred ceeEEEecC--CCCeeEEEECCCCCEEEEeC-----Ce--EEEEEcCCCeeEEEEecCCCCEEEEEEee-CCcEEEEEEc
Q 007234 150 SLLGKFRAS--TKGISCMAVSSDGKMLATAA-----GQ--LKTFNCSDHKKMQKFSGHPGAVRFMTFSD-NGKYVLSSAV 219 (612)
Q Consensus 150 ~~~~~~~~~--~~~v~~l~~spdg~~l~~~~-----g~--i~lwd~~~~~~~~~~~~h~~~v~~l~~sp-~~~~l~s~s~ 219 (612)
+.. .+..+ ...+..++|+|||+.|+.++ .. |++||+.+++...... ... .. +.|+| +|+++++++.
T Consensus 227 ~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~~-~~-~~~s~~dg~~l~~~~~ 302 (396)
T 3c5m_A 227 NVR-KIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMV-MPP-CS-HLMSNFDGSLMVGDGC 302 (396)
T ss_dssp CCE-ESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE-CCS-EE-EEEECSSSSEEEEEEC
T ss_pred cee-EeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeee-CCC-CC-CCccCCCCceEEEecC
Confidence 533 33222 22578899999999877664 24 9999999886543322 222 33 89999 9998877541
Q ss_pred ---------------CCCeEEEEEcCCCccccceeeEeecCCce----------eEEeEEecCCccCCCCcEEEEEec-C
Q 007234 220 ---------------GERYIALWRTDGVKKQSASCVLAMEHPAV----------FMDCRCIDNGGVDDAGLYVLAISE-T 273 (612)
Q Consensus 220 ---------------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~l~t~s~-d 273 (612)
.+..|.+||+.+++.. .+. .+... ......|+ |+|+.|+.++. +
T Consensus 303 ~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~---~l~--~~~~~~~~~~~~~~~~~~~~~~s-----~dg~~l~~~s~~~ 372 (396)
T 3c5m_A 303 DAPVDVADADSYNIENDPFLYVLNTKAKSAQ---KLC--KHSTSWDVLDGDRQITHPHPSFT-----PNDDGVLFTSDFE 372 (396)
T ss_dssp CC----------CCCCCCEEEEEETTTTBCC---EEE--ECCCCCCCBTTBSSTTCCCCEEC-----TTSSEEEEEECTT
T ss_pred CcceeeccccccccCCCCcEEEEecccCceE---Ecc--CCCCccccccccccCCCCCceEc-----cCCCeEEEEecCC
Confidence 2478999999877643 111 12211 12234565 99998887765 5
Q ss_pred CcEEEE--ECCCcc
Q 007234 274 GVCYIW--YGQNIE 285 (612)
Q Consensus 274 g~i~iw--d~~~~~ 285 (612)
+...+| ++.+++
T Consensus 373 ~~~~l~~~~~~~~~ 386 (396)
T 3c5m_A 373 GVPAIYIADVPESY 386 (396)
T ss_dssp SSCEEEEEECCTTC
T ss_pred CCceEEEEEEcccc
Confidence 555555 444443
No 181
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.55 E-value=1.4e-12 Score=131.58 Aligned_cols=234 Identities=9% Similarity=0.040 Sum_probs=162.0
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEE
Q 007234 12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL 91 (612)
Q Consensus 12 ~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~ 91 (612)
+++ +++.+++...++.|.+||..+++.+.++... .. ...+.+.+. + .+++
T Consensus 50 ~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~-~~------------------p~~i~~~~~---------g-~lyv 99 (328)
T 3dsm_A 50 VIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITGF-TS------------------PRYIHFLSD---------E-KAYV 99 (328)
T ss_dssp EEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEECC-SS------------------EEEEEEEET---------T-EEEE
T ss_pred EEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCCC-CC------------------CcEEEEeCC---------C-eEEE
Confidence 553 3445555566899999999999998887421 11 223333221 4 4555
Q ss_pred EE-CCCcEEEEEcCCCeEEEEeccCC----CCCeEEEEEecCCCEEEEEe--cCCcEEEEECCCCceeEEEecCCCCeeE
Q 007234 92 GT-GGGDVLALAVSAGQLKWRLSDCH----PGGVSAISFATHGSCIYSAG--ADGMVCEIDPLTGSLLGKFRASTKGISC 164 (612)
Q Consensus 92 gs-~~g~I~vwd~~~~~~~~~~~~~h----~~~V~~l~~sp~~~~l~s~s--~dg~v~iwd~~~~~~~~~~~~~~~~v~~ 164 (612)
+. .++.|.+||+.+++....+..+. ......+++ ++..++.++ .++.|.+||..+++.+..+... .....
T Consensus 100 ~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~ 176 (328)
T 3dsm_A 100 TQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG-IQPTS 176 (328)
T ss_dssp EEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS-SCBCC
T ss_pred EECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC-CCccc
Confidence 55 78999999999999876664322 115567777 345566555 4889999999999988888753 34578
Q ss_pred EEECCCCCEEEEeCC------------eEEEEEcCCCeeEEEEecC-CCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCC
Q 007234 165 MAVSSDGKMLATAAG------------QLKTFNCSDHKKMQKFSGH-PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (612)
Q Consensus 165 l~~spdg~~l~~~~g------------~i~lwd~~~~~~~~~~~~h-~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~ 231 (612)
++++|+|++++++.+ .|.++|..+++....+.-. ......++|+|+++.++++. . .|.+||..+
T Consensus 177 i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~-~--~v~~~d~~t 253 (328)
T 3dsm_A 177 LVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWIN-N--DIWRMPVEA 253 (328)
T ss_dssp CEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEES-S--SEEEEETTC
T ss_pred eEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEc-c--EEEEEECCC
Confidence 999999998777653 6999999999988777532 23578999999999888764 2 899999988
Q ss_pred CccccceeeEeecCCceeEEeEEecCCccCC-CCcEEEEE----ecCCcEEEEECCCcceeccc
Q 007234 232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDD-AGLYVLAI----SETGVCYIWYGQNIEELRNT 290 (612)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~t~----s~dg~i~iwd~~~~~~~~~~ 290 (612)
++.... . ...........++++ | ++...++. ..++.|.+||.. ++.+..+
T Consensus 254 ~~~~~~-~--~~~~~~~~p~gi~vd-----p~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i 308 (328)
T 3dsm_A 254 DRVPVR-P--FLEFRDTKYYGLTVN-----PNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEF 308 (328)
T ss_dssp SSCCSS-C--SBCCCSSCEEEEEEC-----TTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEE
T ss_pred Cceeee-e--eecCCCCceEEEEEc-----CCCCeEEEEcccccccCCEEEEECCC-CCEEEEE
Confidence 764310 1 111112344566676 7 55555655 568899999988 8776544
No 182
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.55 E-value=1.7e-12 Score=131.57 Aligned_cols=213 Identities=10% Similarity=0.077 Sum_probs=139.1
Q ss_pred EEcCCCCEEEEEe---------CCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccc
Q 007234 12 SFSPALDYFAICS---------GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (612)
Q Consensus 12 ~fspdg~~las~s---------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (612)
++ ||+++|... .++.|.+||+.+++... + ..+....|+++
T Consensus 21 ~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpD------------------------ 69 (347)
T 2gop_A 21 RT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPD------------------------ 69 (347)
T ss_dssp EE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTT------------------------
T ss_pred eE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCC------------------------
Confidence 66 999888653 25679999999887543 2 22333344443
Q ss_pred ccCCcEEEEEECC---Cc--EEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecC-------------------
Q 007234 83 KLGSSLLVLGTGG---GD--VLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD------------------- 138 (612)
Q Consensus 83 ~~~~~~l~~gs~~---g~--I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~d------------------- 138 (612)
++.|+.++.+ +. |.+|++.+++..... . +.. +.+++|+|||+.|+.++.+
T Consensus 70 ---g~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~-~-~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g 143 (347)
T 2gop_A 70 ---GKKIAFMRANEEKKVSEIWVADLETLSSKKIL-E-AKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDD 143 (347)
T ss_dssp ---SSEEEEEEEETTTTEEEEEEEETTTTEEEEEE-E-ESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---
T ss_pred ---CCEEEEEEeccCCCcceEEEEECCCCceEEEE-c-CCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecC
Confidence 6677766653 33 888899888765433 2 223 9999999999998887643
Q ss_pred --------CcEEEEECCCCceeEEEecCCCCeeEEEECCCCCEEEEeC-C--------eEEEEEcCCCeeEEEEecCCCC
Q 007234 139 --------GMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-G--------QLKTFNCSDHKKMQKFSGHPGA 201 (612)
Q Consensus 139 --------g~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~-g--------~i~lwd~~~~~~~~~~~~h~~~ 201 (612)
..|++||+.+++.+..+.. . .+..+.|+||| +++++. . ...+|.+.+++. ..+..+ ..
T Consensus 144 ~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~l~~~-~~ 218 (347)
T 2gop_A 144 LGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE-EKMFEK-VS 218 (347)
T ss_dssp ------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE-EEEEEE-ES
T ss_pred cccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCce-EEeccC-cc
Confidence 5799999998887455554 3 78899999999 777663 1 234444335554 444444 55
Q ss_pred EEEEEEeeCCcEEEEEEcCC-------CeEEEEEcCCCccccceeeEeecCCceeEEe-EEecCCccCCCCcEEEEEecC
Q 007234 202 VRFMTFSDNGKYVLSSAVGE-------RYIALWRTDGVKKQSASCVLAMEHPAVFMDC-RCIDNGGVDDAGLYVLAISET 273 (612)
Q Consensus 202 v~~l~~sp~~~~l~s~s~~d-------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~t~s~d 273 (612)
+..+ +|+|++++.++..+ ..|.+|| +++.. .........+.. ..| + ++ ++++++.+
T Consensus 219 ~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~-----~l~~~~~~~~~~~~~~-----s-dg-~~~~~~~~ 282 (347)
T 2gop_A 219 FYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVM-----GILDEVDRGVGQAKIK-----D-GK-VYFTLFEE 282 (347)
T ss_dssp EEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEE-----ESSTTCCSEEEEEEEE-----T-TE-EEEEEEET
T ss_pred eeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceE-----eccccCCcccCCccEE-----c-Cc-EEEEEecC
Confidence 5554 99999888776322 3677777 33321 122232333332 555 3 66 88888999
Q ss_pred CcEEEEECCC
Q 007234 274 GVCYIWYGQN 283 (612)
Q Consensus 274 g~i~iwd~~~ 283 (612)
|.+++| +.+
T Consensus 283 ~~~~l~-~~~ 291 (347)
T 2gop_A 283 GSVNLY-IWD 291 (347)
T ss_dssp TEEEEE-EES
T ss_pred CcEEEE-EcC
Confidence 999999 763
No 183
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.55 E-value=3.2e-12 Score=125.88 Aligned_cols=181 Identities=13% Similarity=0.207 Sum_probs=130.6
Q ss_pred CcEEEEEECCCcEEEEEcCCCeEEEEecc-----CCCCCeEEEEEe-cCCCEEEEEec-CCcEEEEECCCCceeEEEecC
Q 007234 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSD-----CHPGGVSAISFA-THGSCIYSAGA-DGMVCEIDPLTGSLLGKFRAS 158 (612)
Q Consensus 86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~-----~h~~~V~~l~~s-p~~~~l~s~s~-dg~v~iwd~~~~~~~~~~~~~ 158 (612)
+.++++...++.|.+||.. ++.+..+.. +|...+.++++. +++..+++... ++.|++|| .+++.+..+...
T Consensus 41 g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~ 118 (286)
T 1q7f_A 41 NDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGAT 118 (286)
T ss_dssp CCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTT
T ss_pred CCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCc
Confidence 6677777888999999987 555545431 344678999995 66665555533 89999999 677777776533
Q ss_pred -CCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEe--cCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCc
Q 007234 159 -TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS--GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (612)
Q Consensus 159 -~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~--~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~ 233 (612)
...+.+++++|+|+++++.. +.|++||.. ++.+..+. ++...+..++++|+|+.+++.. .++.|.+|+.....
T Consensus 119 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~~i~~~~~~g~~ 196 (286)
T 1q7f_A 119 ILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDN-RAHCVKVFNYEGQY 196 (286)
T ss_dssp TCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEG-GGTEEEEEETTCCE
T ss_pred cCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEEC-CCCEEEEEcCCCCE
Confidence 34789999999999888765 799999964 55666664 4456789999999998666554 68899999975432
Q ss_pred cccceeeEeecCC--ceeEEeEEecCCccCCCCcEEEEEecCC-cEEEEEC
Q 007234 234 KQSASCVLAMEHP--AVFMDCRCIDNGGVDDAGLYVLAISETG-VCYIWYG 281 (612)
Q Consensus 234 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~t~s~dg-~i~iwd~ 281 (612)
+..+... ......++++ ++|+++++...++ .|.+|+.
T Consensus 197 ------~~~~~~~g~~~~p~~i~~d-----~~G~l~v~~~~~~~~i~~~~~ 236 (286)
T 1q7f_A 197 ------LRQIGGEGITNYPIGVGIN-----SNGEILIADNHNNFNLTIFTQ 236 (286)
T ss_dssp ------EEEESCTTTSCSEEEEEEC-----TTCCEEEEECSSSCEEEEECT
T ss_pred ------EEEEccCCccCCCcEEEEC-----CCCCEEEEeCCCCEEEEEECC
Confidence 1222222 2345667776 8998888887776 9999984
No 184
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.55 E-value=6.6e-12 Score=126.56 Aligned_cols=224 Identities=13% Similarity=0.108 Sum_probs=147.3
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEE
Q 007234 10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (612)
Q Consensus 10 ~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (612)
+++|+|+|++++++..++.|.+||..+++.......+... ..++.|.+. +.++
T Consensus 49 ~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~------------------~~~i~~~~d---------g~l~ 101 (333)
T 2dg1_A 49 GLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKAN------------------PAAIKIHKD---------GRLF 101 (333)
T ss_dssp EEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSS------------------EEEEEECTT---------SCEE
T ss_pred CcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCC------------------cceEEECCC---------CcEE
Confidence 4499999998888888999999999988866544222222 334444332 5666
Q ss_pred EEEECC----CcEEEEEcCCCeEEEEec-cCCCCCeEEEEEecCCCEEEEEec------CCcEEEEECCCCceeEEEecC
Q 007234 90 VLGTGG----GDVLALAVSAGQLKWRLS-DCHPGGVSAISFATHGSCIYSAGA------DGMVCEIDPLTGSLLGKFRAS 158 (612)
Q Consensus 90 ~~gs~~----g~I~vwd~~~~~~~~~~~-~~h~~~V~~l~~sp~~~~l~s~s~------dg~v~iwd~~~~~~~~~~~~~ 158 (612)
++...+ +.|.+||..++.....+. ..+...+.+++++|+|+.+++... .+.|..+|..+++.... ...
T Consensus 102 v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~ 180 (333)
T 2dg1_A 102 VCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPI-IQN 180 (333)
T ss_dssp EEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEE-EEE
T ss_pred EEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEe-ecC
Confidence 665555 579999998887643322 234567999999999987776653 35677777665554333 223
Q ss_pred CCCeeEEEECCCCCEEEEeC---CeEEEEEcCC-CeeEEE--------EecCCCCEEEEEEeeCCcEEEEEEcCCCeEEE
Q 007234 159 TKGISCMAVSSDGKMLATAA---GQLKTFNCSD-HKKMQK--------FSGHPGAVRFMTFSDNGKYVLSSAVGERYIAL 226 (612)
Q Consensus 159 ~~~v~~l~~spdg~~l~~~~---g~i~lwd~~~-~~~~~~--------~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~v 226 (612)
...+..++|+|+|+.++.+. +.|++||+.+ +..+.. +.++ ..+..++++++|+++++.. .++.|.+
T Consensus 181 ~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~-~~~~v~~ 258 (333)
T 2dg1_A 181 ISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMY-GQGRVLV 258 (333)
T ss_dssp ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEE-TTTEEEE
T ss_pred CCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEc-CCCEEEE
Confidence 34578999999998665543 7999999964 332221 1222 4678899999999777665 5789999
Q ss_pred EEcCCCccccceeeEeecCCce------eEEeEEecCCccCCCCcEEEEEecCC
Q 007234 227 WRTDGVKKQSASCVLAMEHPAV------FMDCRCIDNGGVDDAGLYVLAISETG 274 (612)
Q Consensus 227 wd~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~t~s~dg 274 (612)
||.. ++.. ..+..+.. .+..++|+ +++..|+.++.++
T Consensus 259 ~d~~-g~~~-----~~~~~~~~~~g~~~~~~~~~~~-----~dg~~L~v~~~~g 301 (333)
T 2dg1_A 259 FNKR-GYPI-----GQILIPGRDEGHMLRSTHPQFI-----PGTNQLIICSNDI 301 (333)
T ss_dssp ECTT-SCEE-----EEEECTTGGGTCSCBCCEEEEC-----TTSCEEEEEEECG
T ss_pred ECCC-CCEE-----EEEEcCCCccccccCcceEEEC-----CCCCEEEEEeCcc
Confidence 9984 3322 22222221 34556676 8887777666554
No 185
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.54 E-value=3.4e-13 Score=149.73 Aligned_cols=238 Identities=11% Similarity=0.028 Sum_probs=149.7
Q ss_pred EEc--CCCCE-EEEEeC-CCcEEEEECC--C-CcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccccc
Q 007234 12 SFS--PALDY-FAICSG-DARIKIWDTL--K-GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (612)
Q Consensus 12 ~fs--pdg~~-las~s~-dg~i~iwd~~--~-~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (612)
+|+ |||++ ||.++. +..|.+|++. + +. ...+..... .........+.|.+.
T Consensus 83 ~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~-------------~~~~~~~~~~~~spD-------- 140 (662)
T 3azo_A 83 AGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSA-------------VGGGLRWADPVLLPE-------- 140 (662)
T ss_dssp EEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CEECSCCCC-------------STTCEEEEEEEEETT--------
T ss_pred eeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CEeccCCcc-------------CCCCccccCcEECCC--------
Confidence 455 99998 887664 5667777775 3 43 333432100 000112334555544
Q ss_pred CCcEEEEEECC----------CcEEEEEcCC------CeEEEEeccCCCCCeEEEEEecCCCEEEEEecCC--------c
Q 007234 85 GSSLLVLGTGG----------GDVLALAVSA------GQLKWRLSDCHPGGVSAISFATHGSCIYSAGADG--------M 140 (612)
Q Consensus 85 ~~~~l~~gs~~----------g~I~vwd~~~------~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg--------~ 140 (612)
++.|+.++.+ ..|++||+.+ ++.. .+...+...+..++|+|||++|+.++.++ .
T Consensus 141 -g~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~ 218 (662)
T 3azo_A 141 -RGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVR-ELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTE 218 (662)
T ss_dssp -TTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSE-ESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEE
T ss_pred -CCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCcee-EEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcE
Confidence 7778877766 4699999988 5543 44314557788999999999998887553 7
Q ss_pred EEEEECC-CC---ceeEEEecCCCCeeEEEECCCCCEEEEeC--C--eEEEEEcCCCeeEEEEecCCCC--------EEE
Q 007234 141 VCEIDPL-TG---SLLGKFRASTKGISCMAVSSDGKMLATAA--G--QLKTFNCSDHKKMQKFSGHPGA--------VRF 204 (612)
Q Consensus 141 v~iwd~~-~~---~~~~~~~~~~~~v~~l~~spdg~~l~~~~--g--~i~lwd~~~~~~~~~~~~h~~~--------v~~ 204 (612)
|++||+. ++ +.......+...+..+.|+|||+++++++ + .|++||+.+++......++... +..
T Consensus 219 i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~ 298 (662)
T 3azo_A 219 LKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRW 298 (662)
T ss_dssp EEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCS
T ss_pred EEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCce
Confidence 9999998 56 44444444567899999999999777776 4 7888888777654433333322 567
Q ss_pred EEEeeCCcEEEEEEcCCCeEEEE--EcCCCccccceeeEeecCCceeEEeE-EecCCccCCCCcEEEEEecCC--cEEEE
Q 007234 205 MTFSDNGKYVLSSAVGERYIALW--RTDGVKKQSASCVLAMEHPAVFMDCR-CIDNGGVDDAGLYVLAISETG--VCYIW 279 (612)
Q Consensus 205 l~~sp~~~~l~s~s~~d~~i~vw--d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~t~s~dg--~i~iw 279 (612)
++|+|++++++++. . +.+++| |+.+++. ..+..+...+..+ .++ .+...+++++.+. .|.+|
T Consensus 299 ~~~~~~~~~~~~~~-~-~~~~l~~~d~~~~~~------~~l~~~~~~~~~~~s~~-----~~~~~~~~~~~~~~~~i~~~ 365 (662)
T 3azo_A 299 FAPLANGLIAVVHG-K-GAAVLGILDPESGEL------VDAAGPWTEWAATLTVS-----GTRAVGVAASPRTAYEVVEL 365 (662)
T ss_dssp EEECTTSCEEEEEB-S-SSCEEEEEETTTTEE------EECCSSCCEEEEEEEEE-----TTEEEEEEEETTEEEEEEEE
T ss_pred EeEeCCCEEEEEEE-c-CccEEEEEECCCCcE------EEecCCCCeEEEEEecC-----CCEEEEEEcCCCCCCEEEEE
Confidence 89999999888876 6 888899 4444432 2233333333333 332 3333344445554 45556
Q ss_pred ECCCcce
Q 007234 280 YGQNIEE 286 (612)
Q Consensus 280 d~~~~~~ 286 (612)
|+.+++.
T Consensus 366 d~~~g~~ 372 (662)
T 3azo_A 366 DTVTGRA 372 (662)
T ss_dssp ETTTCCE
T ss_pred ECCCCce
Confidence 6666654
No 186
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.54 E-value=8.7e-13 Score=133.77 Aligned_cols=217 Identities=10% Similarity=0.024 Sum_probs=140.7
Q ss_pred EEEEcCCCCEEEEEeCC---C--cEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccccc
Q 007234 10 LTSFSPALDYFAICSGD---A--RIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (612)
Q Consensus 10 ~~~fspdg~~las~s~d---g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (612)
.++|||||++||.++.+ + .|.+||+.+++......... ...+.|.+.
T Consensus 63 ~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~--------------------~~~~~wspd-------- 114 (347)
T 2gop_A 63 MPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN--------------------IRSLEWNED-------- 114 (347)
T ss_dssp EEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE--------------------EEEEEECTT--------
T ss_pred CeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC--------------------ccceeECCC--------
Confidence 35999999999987753 3 48888998887665443211 334445433
Q ss_pred CCcEEEEEEC---------------------------CCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEec
Q 007234 85 GSSLLVLGTG---------------------------GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA 137 (612)
Q Consensus 85 ~~~~l~~gs~---------------------------~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~ 137 (612)
++.|+.++. ...|.+||+.+++.+..+.. . .+..+.|+|+| .+++++.
T Consensus 115 -g~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~--~-~~~~~~~spdg-~~~~~~~ 189 (347)
T 2gop_A 115 -SRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK--P-RFSSGIWHRDK-IVVNVPH 189 (347)
T ss_dssp -SSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE--E-TTCEEEEETTE-EEEEEEC
T ss_pred -CCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC--C-CcccccCCCCe-EEEEEec
Confidence 555666553 24599999999887444433 3 78899999999 8777765
Q ss_pred CC-------cEEEEECCCCceeEEEecCCCCeeEEEECCCCCEEEEeC----------CeEEEEEcCCCeeEEEEecCCC
Q 007234 138 DG-------MVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA----------GQLKTFNCSDHKKMQKFSGHPG 200 (612)
Q Consensus 138 dg-------~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~----------g~i~lwd~~~~~~~~~~~~h~~ 200 (612)
++ ...+|.+.+++. ..+..+ ..+.++ +|||+.|+.++ ..|++|| +++......+|..
T Consensus 190 ~~~~~~~~~~~~l~~~d~~~~-~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~ 263 (347)
T 2gop_A 190 REIIPQYFKFWDIYIWEDGKE-EKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDR 263 (347)
T ss_dssp CCSSCCSSCCEEEEEEETTEE-EEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCS
T ss_pred ccccccccccccEEEeCCCce-EEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCc
Confidence 42 334443335544 334334 445444 99999887654 2688888 5655444456677
Q ss_pred CEEE-EEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcE-EE
Q 007234 201 AVRF-MTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVC-YI 278 (612)
Q Consensus 201 ~v~~-l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i-~i 278 (612)
.+.. +.|+ ++ .+++++ .++.+++| +.+++. .....+ ...+..+.++ + .++++++.++.. .+
T Consensus 264 ~~~~~~~~s-dg-~~~~~~-~~~~~~l~-~~~g~~-----~~~~~~-~~~v~~~~~s-----~--~~~~~~~~~~~~~~l 326 (347)
T 2gop_A 264 GVGQAKIKD-GK-VYFTLF-EEGSVNLY-IWDGEI-----KPIAKG-RHWIMGFDVD-----E--IVVYLKETATRLREL 326 (347)
T ss_dssp EEEEEEEET-TE-EEEEEE-ETTEEEEE-EESSSE-----EEEECS-SSEEEEEEES-----S--SEEEEEECSSSCCEE
T ss_pred ccCCccEEc-Cc-EEEEEe-cCCcEEEE-EcCCce-----EEEecC-CCeEEeeeee-----C--cEEEEEcCCCChHHh
Confidence 8886 8999 88 777766 68999999 874432 122233 4445566676 6 677777777654 77
Q ss_pred EECC
Q 007234 279 WYGQ 282 (612)
Q Consensus 279 wd~~ 282 (612)
|.+.
T Consensus 327 ~~~~ 330 (347)
T 2gop_A 327 FTWD 330 (347)
T ss_dssp EEES
T ss_pred eEeC
Confidence 7665
No 187
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.53 E-value=3.7e-12 Score=142.52 Aligned_cols=202 Identities=8% Similarity=-0.019 Sum_probs=138.1
Q ss_pred eeEEEeeecccccccccCCcEEEEEECC-C----cEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCc--
Q 007234 68 YTCMKWLSVDRKKKRKLGSSLLVLGTGG-G----DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGM-- 140 (612)
Q Consensus 68 ~~~~~w~~~~~~~~~~~~~~~l~~gs~~-g----~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~-- 140 (612)
.....|.+. +++|+.+... | .|++||+.+++....... + ..+.+++|+|||+.|+.++.++.
T Consensus 127 ~~~~~~SPD---------g~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~-~-~~~~~~~wspDg~~l~~~~~~~~~~ 195 (710)
T 2xdw_A 127 LRGYAFSED---------GEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-R-VKFSCMAWTHDGKGMFYNAYPQQDG 195 (710)
T ss_dssp EEEEEECTT---------SSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-E-ECSCCEEECTTSSEEEEEECCCCSS
T ss_pred EEEEEECCC---------CCEEEEEEcCCCCceEEEEEEECCCCCCCccccc-C-cccceEEEEeCCCEEEEEEECCccc
Confidence 445566644 6777766553 3 799999999988754322 2 23678999999999999888766
Q ss_pred --------------EEEEECCCCcee--EEEec--CCCCeeEEEECCCCCEEEEeC-------CeEEEEEcCC------C
Q 007234 141 --------------VCEIDPLTGSLL--GKFRA--STKGISCMAVSSDGKMLATAA-------GQLKTFNCSD------H 189 (612)
Q Consensus 141 --------------v~iwd~~~~~~~--~~~~~--~~~~v~~l~~spdg~~l~~~~-------g~i~lwd~~~------~ 189 (612)
|++|++.+++.. ..+.. +...+..+.|+|||++|+.++ ..|++||+.+ +
T Consensus 196 ~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~ 275 (710)
T 2xdw_A 196 KSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITG 275 (710)
T ss_dssp CCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCS
T ss_pred cccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCC
Confidence 999999887632 23333 344578999999999988754 3799999986 4
Q ss_pred e-eEEEEecCCCCEEEEEEeeCCcEEEEEEcCC---CeEEEEEcCCCccccceeeEeecCCc-eeEEeEEecCCccCCCC
Q 007234 190 K-KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE---RYIALWRTDGVKKQSASCVLAMEHPA-VFMDCRCIDNGGVDDAG 264 (612)
Q Consensus 190 ~-~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d---~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 264 (612)
. ....+..+...+.. .|+|+|..|+..+..+ ..|.+||+.++..... .....+.. ..+..+.+. +++
T Consensus 276 ~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~--~~l~~~~~~~~~~~~~~~-----~~~ 347 (710)
T 2xdw_A 276 ILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKW--KVLVPEHEKDVLEWVACV-----RSN 347 (710)
T ss_dssp SCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGC--EEEECCCSSCEEEEEEEE-----TTT
T ss_pred ccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccc--eeccCCCCCCeEEEEEEE-----cCC
Confidence 3 45667777766655 5889998887766333 3699999987642111 11223333 355556665 677
Q ss_pred cEEEEEecCCc--EEEEECCCcceec
Q 007234 265 LYVLAISETGV--CYIWYGQNIEELR 288 (612)
Q Consensus 265 ~~l~t~s~dg~--i~iwd~~~~~~~~ 288 (612)
.++++...+|. |.+|++.+++.++
T Consensus 348 ~lv~~~~~~g~~~l~~~~~~~g~~~~ 373 (710)
T 2xdw_A 348 FLVLCYLHDVKNTLQLHDLATGALLK 373 (710)
T ss_dssp EEEEEEEETTEEEEEEEETTTCCEEE
T ss_pred EEEEEEEECCEEEEEEEECCCCCEEE
Confidence 88888888884 5667776665443
No 188
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.50 E-value=1.2e-11 Score=122.64 Aligned_cols=190 Identities=8% Similarity=-0.023 Sum_probs=133.0
Q ss_pred eeEEEeeecccccccccCCc-EEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEEC
Q 007234 68 YTCMKWLSVDRKKKRKLGSS-LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDP 146 (612)
Q Consensus 68 ~~~~~w~~~~~~~~~~~~~~-~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~ 146 (612)
.....|.+. ++ +++++..++.|..||..++ ...+ ..+...+.+++++|+|+++++...++.|.+||.
T Consensus 30 ~eg~~~d~~---------g~~l~~~~~~~~~i~~~~~~~~--~~~~-~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~ 97 (296)
T 3e5z_A 30 TEGPVYVPA---------RSAVIFSDVRQNRTWAWSDDGQ--LSPE-MHPSHHQNGHCLNKQGHLIACSHGLRRLERQRE 97 (296)
T ss_dssp EEEEEEEGG---------GTEEEEEEGGGTEEEEEETTSC--EEEE-ESSCSSEEEEEECTTCCEEEEETTTTEEEEECS
T ss_pred ccCCeEeCC---------CCEEEEEeCCCCEEEEEECCCC--eEEE-ECCCCCcceeeECCCCcEEEEecCCCeEEEEcC
Confidence 345667654 44 7888888999999999988 3344 346678999999999998777767789999999
Q ss_pred CCCceeEEEecC----CCCeeEEEECCCCCEEEEeC-------------------CeEEEEEcCCCeeEEEEecCCCCEE
Q 007234 147 LTGSLLGKFRAS----TKGISCMAVSSDGKMLATAA-------------------GQLKTFNCSDHKKMQKFSGHPGAVR 203 (612)
Q Consensus 147 ~~~~~~~~~~~~----~~~v~~l~~spdg~~l~~~~-------------------g~i~lwd~~~~~~~~~~~~h~~~v~ 203 (612)
.+++........ ...+..++++|+|+++++.. +.|+.++.. ++ +..+..+.....
T Consensus 98 ~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~~~~~~ 175 (296)
T 3e5z_A 98 PGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIRDRVKPN 175 (296)
T ss_dssp TTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEECCCSSEE
T ss_pred CCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeecCCCCCc
Confidence 888764443221 23567899999999888621 356666655 44 445556777789
Q ss_pred EEEEeeCCcEEEEEEcCCCeEEEEEcC-CCcc-ccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEEC
Q 007234 204 FMTFSDNGKYVLSSAVGERYIALWRTD-GVKK-QSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (612)
Q Consensus 204 ~l~~sp~~~~l~s~s~~d~~i~vwd~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~ 281 (612)
.++|+|+|+.+++ ...++.|.+|++. .+.. . ....+ .........++++ ++|++.++. ++.|.+|+.
T Consensus 176 gi~~s~dg~~lv~-~~~~~~i~~~~~~~~g~~~~-~~~~~--~~~~~~p~~i~~d-----~~G~l~v~~--~~~v~~~~~ 244 (296)
T 3e5z_A 176 GLAFLPSGNLLVS-DTGDNATHRYCLNARGETEY-QGVHF--TVEPGKTDGLRVD-----AGGLIWASA--GDGVHVLTP 244 (296)
T ss_dssp EEEECTTSCEEEE-ETTTTEEEEEEECSSSCEEE-EEEEE--CCSSSCCCSEEEB-----TTSCEEEEE--TTEEEEECT
T ss_pred cEEECCCCCEEEE-eCCCCeEEEEEECCCCcCcC-CCeEe--eCCCCCCCeEEEC-----CCCCEEEEc--CCeEEEECC
Confidence 9999999998844 4468899999997 3432 1 11122 2222333456666 888866655 788999986
Q ss_pred C
Q 007234 282 Q 282 (612)
Q Consensus 282 ~ 282 (612)
.
T Consensus 245 ~ 245 (296)
T 3e5z_A 245 D 245 (296)
T ss_dssp T
T ss_pred C
Confidence 4
No 189
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.49 E-value=1.3e-10 Score=114.67 Aligned_cols=234 Identities=9% Similarity=-0.006 Sum_probs=155.5
Q ss_pred ccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccccc
Q 007234 5 NIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (612)
Q Consensus 5 ~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (612)
.++.+ +++|+|+++++...++.|.+||.. ++... +..... ......+.+.+.
T Consensus 16 ~~~~i--~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~-~~~~~~----------------~~~~~~i~~~~~-------- 67 (299)
T 2z2n_A 16 GPYGI--TVSDKGKVWITQHKANMISCINLD-GKITE-YPLPTP----------------DAKVMCLTISSD-------- 67 (299)
T ss_dssp CEEEE--EECTTSCEEEEETTTTEEEEECTT-CCEEE-EECSST----------------TCCEEEEEECTT--------
T ss_pred Cccce--EECCCCCEEEEecCCCcEEEEcCC-CCeEE-ecCCcc----------------cCceeeEEECCC--------
Confidence 45444 999999988776668899999988 65433 221100 112223333321
Q ss_pred CCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEE-EecCCCCee
Q 007234 85 GSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK-FRASTKGIS 163 (612)
Q Consensus 85 ~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~-~~~~~~~v~ 163 (612)
+.+.++...++.|..||.. ++............+.++++.++|..+++...++.|..||. +++.... .......+.
T Consensus 68 -g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~ 144 (299)
T 2z2n_A 68 -GEVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPS 144 (299)
T ss_dssp -SCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEE
T ss_pred -CCEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCc
Confidence 5555655557889999987 44322212234567899999999987777777889999998 5554332 222345789
Q ss_pred EEEECCCCCEEEEeC--CeEEEEEcCCCeeEEE-EecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceee
Q 007234 164 CMAVSSDGKMLATAA--GQLKTFNCSDHKKMQK-FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV 240 (612)
Q Consensus 164 ~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~-~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~ 240 (612)
+++++++|++.++.. +.|..||. +++.... +..+...+.++++.++|..+++.. .++.|.+|+. ++... .
T Consensus 145 ~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~~~~i~~~~~-~g~~~----~ 217 (299)
T 2z2n_A 145 FITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEI-IGNKIGRITT-SGEIT----E 217 (299)
T ss_dssp EEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEET-TTTEEEEECT-TCCEE----E
T ss_pred eEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEcc-CCceEEEECC-CCcEE----E
Confidence 999999998888775 79999998 6655432 333455688999999998666543 5788999998 55422 1
Q ss_pred EeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEEC
Q 007234 241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (612)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~ 281 (612)
.........+..+.+. ++|+..++...++.|..||.
T Consensus 218 ~~~~~~~~~~~~i~~~-----~~g~l~v~~~~~~~i~~~d~ 253 (299)
T 2z2n_A 218 FKIPTPNARPHAITAG-----AGIDLWFTEWGANKIGRLTS 253 (299)
T ss_dssp EECSSTTCCEEEEEEC-----STTCEEEEETTTTEEEEEET
T ss_pred EECCCCCCCceeEEEC-----CCCCEEEeccCCceEEEECC
Confidence 2222233345566676 88886666657789999987
No 190
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.48 E-value=3.4e-11 Score=129.69 Aligned_cols=193 Identities=14% Similarity=0.115 Sum_probs=149.5
Q ss_pred CcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECC--CCceeEEEecCCCCee
Q 007234 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL--TGSLLGKFRASTKGIS 163 (612)
Q Consensus 86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~--~~~~~~~~~~~~~~v~ 163 (612)
+.++++...++.|.++|..+++.+.++.. ...+.++.|+|||+++++++.|+.|.+||+. +++.+.++.... ...
T Consensus 167 ~~~~V~~~~~~~V~viD~~t~~v~~~i~~--g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P~ 243 (567)
T 1qks_A 167 NLFSVTLRDAGQIALIDGSTYEIKTVLDT--GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EAR 243 (567)
T ss_dssp GEEEEEETTTTEEEEEETTTCCEEEEEEC--SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-EEE
T ss_pred ceEEEEeCCCCeEEEEECCCCeEEEEEeC--CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-CCc
Confidence 44566667788899999999999887753 3467899999999999999999999999996 888888887533 468
Q ss_pred EEEEC----CCCCEEEEeC---CeEEEEEcCCCeeEEEEec----------CCC-CEEEEEEeeCCcEEEEEEcCCCeEE
Q 007234 164 CMAVS----SDGKMLATAA---GQLKTFNCSDHKKMQKFSG----------HPG-AVRFMTFSDNGKYVLSSAVGERYIA 225 (612)
Q Consensus 164 ~l~~s----pdg~~l~~~~---g~i~lwd~~~~~~~~~~~~----------h~~-~v~~l~~sp~~~~l~s~s~~d~~i~ 225 (612)
.++|+ |||+++++++ +++.++|..+.+.+..+.. |.. .+..+.+++++..++..-..+|.|.
T Consensus 244 ~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~ 323 (567)
T 1qks_A 244 SIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKIL 323 (567)
T ss_dssp EEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEE
T ss_pred eeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEE
Confidence 99999 6999999887 8999999999998887752 222 6788999998776666655789999
Q ss_pred EEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEe-cCCcEEEEECCCcceeccc
Q 007234 226 LWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQNIEELRNT 290 (612)
Q Consensus 226 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s-~dg~i~iwd~~~~~~~~~~ 290 (612)
++|....+.. .+..+.. ........|+ |+|+++++++ .++.|.++|..+++.+...
T Consensus 324 ~vd~~~~~~~---~v~~i~~-~~~~~d~~~~-----pdgr~~~va~~~sn~V~ViD~~t~kl~~~i 380 (567)
T 1qks_A 324 LVDYTDLNNL---KTTEISA-ERFLHDGGLD-----GSHRYFITAANARNKLVVIDTKEGKLVAIE 380 (567)
T ss_dssp EEETTCSSEE---EEEEEEC-CSSEEEEEEC-----TTSCEEEEEEGGGTEEEEEETTTTEEEEEE
T ss_pred EEecCCCccc---eeeeeec-cccccCceEC-----CCCCEEEEEeCCCCeEEEEECCCCcEEEEE
Confidence 9998775422 1222222 2334455676 9999987776 5789999999999876543
No 191
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.47 E-value=2.8e-12 Score=143.10 Aligned_cols=235 Identities=9% Similarity=0.007 Sum_probs=150.1
Q ss_pred EEEEcCCCCEEEEE-----eCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccccc
Q 007234 10 LTSFSPALDYFAIC-----SGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (612)
Q Consensus 10 ~~~fspdg~~las~-----s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (612)
.++|||||++||.+ +.+.+|++||+.+|+.+. ..+...+ ....+.|.+.
T Consensus 125 ~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~----------------~~~~~~wspD-------- 178 (695)
T 2bkl_A 125 TWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGG----------------KYATPKWTPD-------- 178 (695)
T ss_dssp EEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCC----------------TTCCCEECTT--------
T ss_pred EEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcc----------------cccceEEecC--------
Confidence 45999999999944 334689999999988641 1111111 0123445443
Q ss_pred CCcEEEEEECCCc-------------EEEEEcCCCe----EEEEeccCCCCCeEEEEEecCCCEEEEEecCC----cEEE
Q 007234 85 GSSLLVLGTGGGD-------------VLALAVSAGQ----LKWRLSDCHPGGVSAISFATHGSCIYSAGADG----MVCE 143 (612)
Q Consensus 85 ~~~~l~~gs~~g~-------------I~vwd~~~~~----~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg----~v~i 143 (612)
++.|+.++.+.. |++|++.++. .+.. ...|...+.++.|+|||++|+.++.++ .|++
T Consensus 179 -g~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~-~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~ 256 (695)
T 2bkl_A 179 -SKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHE-RTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYW 256 (695)
T ss_dssp -SSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEEC-CCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEE
T ss_pred -CCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEe-cCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEE
Confidence 677888887665 9999999876 2222 234556889999999999988877666 6777
Q ss_pred EECCCCceeEEEecCCCCeeEEEECCCCCEEEEeC-----CeEEEEEcCCCee--EEEE-ecC-CCCEEEEEEeeCCcEE
Q 007234 144 IDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKK--MQKF-SGH-PGAVRFMTFSDNGKYV 214 (612)
Q Consensus 144 wd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~-----g~i~lwd~~~~~~--~~~~-~~h-~~~v~~l~~sp~~~~l 214 (612)
||..+++ ...+..+...+....+ ++|.+++.+. +.|++||+.+++. ...+ ..+ ...+..++|+ ++..+
T Consensus 257 ~~~~~~~-~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv 333 (695)
T 2bkl_A 257 KRPGEKD-FRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLS 333 (695)
T ss_dssp ECTTCSS-CEEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEE
T ss_pred EcCCCCc-eEEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEE
Confidence 8765554 3444445555566666 5666544443 5899999987753 2333 333 4457888888 56666
Q ss_pred EEEEcCCCeEEEEEcCC-CccccceeeEeecCC-ceeEEeEEecCCccCCCCcEEEEEe----cCCcEEEEECCCcce
Q 007234 215 LSSAVGERYIALWRTDG-VKKQSASCVLAMEHP-AVFMDCRCIDNGGVDDAGLYVLAIS----ETGVCYIWYGQNIEE 286 (612)
Q Consensus 215 ~s~s~~d~~i~vwd~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~t~s----~dg~i~iwd~~~~~~ 286 (612)
++.. .|+..++|.+.. ++. ...+..+ ...+..+.++ +++..++... ..++|++||+.+++.
T Consensus 334 ~~~~-~dg~~~l~~~~~~g~~-----~~~l~~~~~~~v~~~~~s-----~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 334 LEYL-KDATSEVRVATLKGKP-----VRTVQLPGVGAASNLMGL-----EDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp EEEE-ETTEEEEEEEETTCCE-----EEECCCSSSSEECCCBSC-----TTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred EEEE-ECCEEEEEEEeCCCCe-----eEEecCCCCeEEEEeecC-----CCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 6665 788888887652 321 1222222 3333444454 7887666432 357899999988753
No 192
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.47 E-value=4.2e-12 Score=141.68 Aligned_cols=237 Identities=10% Similarity=0.001 Sum_probs=146.2
Q ss_pred EcCCCCEEEEEeCCC---cEEEE--ECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCc
Q 007234 13 FSPALDYFAICSGDA---RIKIW--DTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (612)
Q Consensus 13 fspdg~~las~s~dg---~i~iw--d~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (612)
.+|+|++++....++ .-.+| +...+.....+.... +..+| ........|.|. ++
T Consensus 75 p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~-----------~a~~~-~~~~~~~~~SPD---------G~ 133 (695)
T 2bkl_A 75 PSRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNG-----------WSKDG-TVSLGTWAVSWD---------GK 133 (695)
T ss_dssp CEEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGG-----------SSSSS-CEEEEEEEECTT---------SS
T ss_pred CEEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHH-----------hccCC-CEEEEEEEECCC---------CC
Confidence 458999988776543 33444 444454332222100 01122 123445556543 66
Q ss_pred EEEEEEC-C----CcEEEEEcCCCeEE-EEeccCCCCCeEEEEEecCCCEEEEEecCCc-------------EEEEECCC
Q 007234 88 LLVLGTG-G----GDVLALAVSAGQLK-WRLSDCHPGGVSAISFATHGSCIYSAGADGM-------------VCEIDPLT 148 (612)
Q Consensus 88 ~l~~gs~-~----g~I~vwd~~~~~~~-~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~-------------v~iwd~~~ 148 (612)
+|+.+.. + ..|++||+.+++.+ ...... ....+++|+|||+.|+.++.|.. |++|++.+
T Consensus 134 ~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~--~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t 211 (695)
T 2bkl_A 134 KVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEG--GKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGT 211 (695)
T ss_dssp EEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSC--CTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTS
T ss_pred EEEEEECCCCCceEEEEEEECCCCCCcCCcccCc--ccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCC
Confidence 6664332 3 46999999999864 211111 11268999999999999988776 99999988
Q ss_pred Cce--eEEE--ecCCCCeeEEEECCCCCEEEEeC--C----eEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEE
Q 007234 149 GSL--LGKF--RASTKGISCMAVSSDGKMLATAA--G----QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSA 218 (612)
Q Consensus 149 ~~~--~~~~--~~~~~~v~~l~~spdg~~l~~~~--g----~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s 218 (612)
++. ...+ ..+...+.++.|+|||++|+.++ + .|++||..+++ ...+..+...+....+ ++|. ++..+
T Consensus 212 ~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~~~~~~~-~~g~-l~~~s 288 (695)
T 2bkl_A 212 EPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD-FRLLVKGVGAKYEVHA-WKDR-FYVLT 288 (695)
T ss_dssp CGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS-CEEEEECSSCCEEEEE-ETTE-EEEEE
T ss_pred CchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc-eEEeecCCCceEEEEe-cCCc-EEEEE
Confidence 762 2223 33445788999999999988765 4 78888766554 4455556666666666 6777 55554
Q ss_pred cC---CCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECC
Q 007234 219 VG---ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (612)
Q Consensus 219 ~~---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~ 282 (612)
.. ++.|.+||+.++.......+ ...++...+..+.+. ++.++++...|+..++|...
T Consensus 289 ~~~~~~~~l~~~d~~~~~~~~~~~l-~~~~~~~~l~~~~~~------~~~lv~~~~~dg~~~l~~~~ 348 (695)
T 2bkl_A 289 DEGAPRQRVFEVDPAKPARASWKEI-VPEDSSASLLSVSIV------GGHLSLEYLKDATSEVRVAT 348 (695)
T ss_dssp CTTCTTCEEEEEBTTBCSGGGCEEE-ECCCSSCEEEEEEEE------TTEEEEEEEETTEEEEEEEE
T ss_pred CCCCCCCEEEEEeCCCCCccCCeEE-ecCCCCCeEEEEEEE------CCEEEEEEEECCEEEEEEEe
Confidence 32 47899999977653111111 112224445555553 56788888999988887654
No 193
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.46 E-value=3e-11 Score=120.47 Aligned_cols=237 Identities=14% Similarity=0.114 Sum_probs=153.9
Q ss_pred EEEEcCCCCEEEE-------EeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccc
Q 007234 10 LTSFSPALDYFAI-------CSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (612)
Q Consensus 10 ~~~fspdg~~las-------~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (612)
+++|+++|+++++ +..++.|.+||..+++........ ..++ ......+.+.+.
T Consensus 22 ~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~-------------~~~~-~~~~~~i~~~~~------ 81 (314)
T 1pjx_A 22 GPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPE-------------VNGY-GGIPAGCQCDRD------ 81 (314)
T ss_dssp EEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCE-------------ETTE-ECCEEEEEECSS------
T ss_pred CceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecc-------------cCCC-CCCCceEEEecC------
Confidence 4499999988877 566889999998888764322100 0001 112334444432
Q ss_pred ccCCcEEEEEECCCcEEEEEcCCCeEEEEeccC----CCCCeEEEEEecCCCEEEEEecC---------------CcEEE
Q 007234 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDC----HPGGVSAISFATHGSCIYSAGAD---------------GMVCE 143 (612)
Q Consensus 83 ~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~----h~~~V~~l~~sp~~~~l~s~s~d---------------g~v~i 143 (612)
+..+.+++..+.|.+||.. ++........ ....+.+++++++|+.+++...+ +.|..
T Consensus 82 ---~g~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~ 157 (314)
T 1pjx_A 82 ---ANQLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYC 157 (314)
T ss_dssp ---SSEEEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEE
T ss_pred ---CCcEEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEE
Confidence 1456666666679999998 7654220211 12358899999999877776655 57888
Q ss_pred EECCCCceeEEEecCCCCeeEEEEC----CCCCEEEEe-C--CeEEEEEcC-CCe-----eEEEEecCC-CCEEEEEEee
Q 007234 144 IDPLTGSLLGKFRASTKGISCMAVS----SDGKMLATA-A--GQLKTFNCS-DHK-----KMQKFSGHP-GAVRFMTFSD 209 (612)
Q Consensus 144 wd~~~~~~~~~~~~~~~~v~~l~~s----pdg~~l~~~-~--g~i~lwd~~-~~~-----~~~~~~~h~-~~v~~l~~sp 209 (612)
||.. ++...... +......++++ |+|+.++++ . +.|++||.+ +++ ....+.++. ..+..+++++
T Consensus 158 ~~~~-g~~~~~~~-~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~ 235 (314)
T 1pjx_A 158 FTTD-GQMIQVDT-AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDE 235 (314)
T ss_dssp ECTT-SCEEEEEE-EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBT
T ss_pred ECCC-CCEEEecc-CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECC
Confidence 8865 55433332 33456889999 999766554 3 799999986 454 233344444 5678899999
Q ss_pred CCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEE-ecCCcEEEEECCC
Q 007234 210 NGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAI-SETGVCYIWYGQN 283 (612)
Q Consensus 210 ~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~-s~dg~i~iwd~~~ 283 (612)
+|+++++.. .++.|.+||..+++.. .....+...+..++++ ++|+.|+++ ..++.|..|+...
T Consensus 236 ~G~l~v~~~-~~~~i~~~d~~~g~~~-----~~~~~~~~~~~~i~~~-----~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 236 DNNLLVANW-GSSHIEVFGPDGGQPK-----MRIRCPFEKPSNLHFK-----PQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp TCCEEEEEE-TTTEEEEECTTCBSCS-----EEEECSSSCEEEEEEC-----TTSSEEEEEETTTTEEEEEECSS
T ss_pred CCCEEEEEc-CCCEEEEEcCCCCcEe-----EEEeCCCCCceeEEEC-----CCCCEEEEEeCCCCeEEEEeCCC
Confidence 998777765 5789999998866533 1222333445666676 899855555 4568999998764
No 194
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.43 E-value=9.7e-11 Score=117.93 Aligned_cols=223 Identities=10% Similarity=0.033 Sum_probs=152.7
Q ss_pred CCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEECCCcEEEEEcC
Q 007234 25 GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVS 104 (612)
Q Consensus 25 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~ 104 (612)
.++.|.+||..+++....+..... ...+......+... + +.+.++...++.|.+||..
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n------------~~~lg~~~~~i~~~--~--------~~lyv~~~~~~~v~viD~~ 72 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRAN------------GFKLGDVAQSMVIR--D--------GIGWIVVNNSHVIFAIDIN 72 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHH------------SSCCBSCEEEEEEE--T--------TEEEEEEGGGTEEEEEETT
T ss_pred CCceEEEEECCCCEEhhhhHhhhc------------CcccCccceEEEEE--C--------CEEEEEEcCCCEEEEEECc
Confidence 378999999999987654411000 00111122233321 1 4455666667889999999
Q ss_pred CCeEEEEeccCCCCCeEEEEEecCCCEEEEEe-cCCcEEEEECCCCceeEEEecCC-----CCeeEEEECCCCCEEEEe-
Q 007234 105 AGQLKWRLSDCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPLTGSLLGKFRAST-----KGISCMAVSSDGKMLATA- 177 (612)
Q Consensus 105 ~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s-~dg~v~iwd~~~~~~~~~~~~~~-----~~v~~l~~spdg~~l~~~- 177 (612)
+++.+.++. .......++++++++ ++.+. .++.|.+||..+++....+.... .....+++ .+++++++.
T Consensus 73 t~~~~~~i~--~~~~p~~i~~~~~g~-lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~ 148 (328)
T 3dsm_A 73 TFKEVGRIT--GFTSPRYIHFLSDEK-AYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCW 148 (328)
T ss_dssp TCCEEEEEE--CCSSEEEEEEEETTE-EEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEEC
T ss_pred ccEEEEEcC--CCCCCcEEEEeCCCe-EEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcC
Confidence 999987773 446789999999984 55555 89999999999999887776543 14567777 455555553
Q ss_pred --CCeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCC----------CeEEEEEcCCCccccceeeEeecC
Q 007234 178 --AGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE----------RYIALWRTDGVKKQSASCVLAMEH 245 (612)
Q Consensus 178 --~g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d----------~~i~vwd~~~~~~~~~~~~~~~~~ 245 (612)
++.|.++|..+++.+..+.... ....+.++|+|++++++. .+ +.|.+||..+++.. .......
T Consensus 149 ~~~~~v~viD~~t~~~~~~i~~g~-~p~~i~~~~dG~l~v~~~-~~~~~~~~~~~~~~v~~id~~t~~v~---~~~~~~~ 223 (328)
T 3dsm_A 149 SYQNRILKIDTETDKVVDELTIGI-QPTSLVMDKYNKMWTITD-GGYEGSPYGYEAPSLYRIDAETFTVE---KQFKFKL 223 (328)
T ss_dssp TTCCEEEEEETTTTEEEEEEECSS-CBCCCEECTTSEEEEEBC-CBCTTCSSCBCCCEEEEEETTTTEEE---EEEECCT
T ss_pred CCCCEEEEEECCCCeEEEEEEcCC-CccceEEcCCCCEEEEEC-CCccCCccccCCceEEEEECCCCeEE---EEEecCC
Confidence 2789999999999888886533 346789999998766654 34 78999999887633 1122211
Q ss_pred CceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcce
Q 007234 246 PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE 286 (612)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~ 286 (612)
......++++ |++++++++.. .|.+||..+++.
T Consensus 224 -g~~p~~la~~-----~d~~~lyv~~~--~v~~~d~~t~~~ 256 (328)
T 3dsm_A 224 -GDWPSEVQLN-----GTRDTLYWINN--DIWRMPVEADRV 256 (328)
T ss_dssp -TCCCEEEEEC-----TTSCEEEEESS--SEEEEETTCSSC
T ss_pred -CCCceeEEEe-----cCCCEEEEEcc--EEEEEECCCCce
Confidence 1234566776 88898888765 899999877764
No 195
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.43 E-value=9.9e-12 Score=121.75 Aligned_cols=189 Identities=12% Similarity=0.125 Sum_probs=146.0
Q ss_pred CcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCC-CCeeE
Q 007234 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST-KGISC 164 (612)
Q Consensus 86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~-~~v~~ 164 (612)
+++|++++.++.|.+||.++|+.++++.......+.++.++|+|+.++ +.++.|..||. +|+.+..+..+. ..+.+
T Consensus 5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~ 81 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQT 81 (276)
T ss_dssp CEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEE
T ss_pred CcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccccc
Confidence 788999999999999999999999998543225789999999999888 45788999998 899999988753 47889
Q ss_pred EEECCCCCEEEEeC---CeEEEEEcCCCeeEEEEec------CCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccc
Q 007234 165 MAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSG------HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ 235 (612)
Q Consensus 165 l~~spdg~~l~~~~---g~i~lwd~~~~~~~~~~~~------h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~ 235 (612)
+.+.|+|+++++.+ +.+..+|. +++.+.++.. +......+.+.++|+++++.. .++.|.+||.. ++..
T Consensus 82 ~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~-~~~~v~~~d~~-G~~~ 158 (276)
T 3no2_A 82 ARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLF-ATSEVREIAPN-GQLL 158 (276)
T ss_dssp EEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEET-TTTEEEEECTT-SCEE
T ss_pred cEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEec-CCCEEEEECCC-CCEE
Confidence 99999999999875 36666665 6777776642 222345567889999988875 79999999988 6643
Q ss_pred cceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccC
Q 007234 236 SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK 291 (612)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~ 291 (612)
.....+..... .... ++|+.+++++.++.|..||..+|+.+....
T Consensus 159 -----w~~~~~~~~~~-~~~~-----~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~ 203 (276)
T 3no2_A 159 -----NSVKLSGTPFS-SAFL-----DNGDCLVACGDAHCFVQLNLESNRIVRRVN 203 (276)
T ss_dssp -----EEEECSSCCCE-EEEC-----TTSCEEEECBTTSEEEEECTTTCCEEEEEE
T ss_pred -----EEEECCCCccc-eeEc-----CCCCEEEEeCCCCeEEEEeCcCCcEEEEec
Confidence 33333222222 3344 889999998888899999999999876543
No 196
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.42 E-value=2.2e-10 Score=113.56 Aligned_cols=200 Identities=17% Similarity=0.148 Sum_probs=133.6
Q ss_pred eeEEEeeecccccccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECC
Q 007234 68 YTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL 147 (612)
Q Consensus 68 ~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~ 147 (612)
.....|.+.+ +.++++...++.|..||..++... .+ .....+.+++++++|++++ +. ++.|.+||..
T Consensus 15 ~Egp~w~~~~--------~~l~~~d~~~~~i~~~d~~~~~~~-~~--~~~~~~~~i~~~~dG~l~v-~~-~~~l~~~d~~ 81 (297)
T 3g4e_A 15 GESPVWEEVS--------NSLLFVDIPAKKVCRWDSFTKQVQ-RV--TMDAPVSSVALRQSGGYVA-TI-GTKFCALNWK 81 (297)
T ss_dssp EEEEEEETTT--------TEEEEEETTTTEEEEEETTTCCEE-EE--ECSSCEEEEEEBTTSSEEE-EE-TTEEEEEETT
T ss_pred ccCCeEECCC--------CEEEEEECCCCEEEEEECCCCcEE-EE--eCCCceEEEEECCCCCEEE-EE-CCeEEEEECC
Confidence 3456776654 567777778889999999988763 22 2456799999999999544 44 5689999998
Q ss_pred CCceeEEEecC----CCCeeEEEECCCCCEEEEeC-------------CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeC
Q 007234 148 TGSLLGKFRAS----TKGISCMAVSSDGKMLATAA-------------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDN 210 (612)
Q Consensus 148 ~~~~~~~~~~~----~~~v~~l~~spdg~~l~~~~-------------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~ 210 (612)
+++........ ...+..++++|+|+++++.. +.|+.+|.. ++. ..+..+....+.++|+|+
T Consensus 82 ~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~-~~~~~~~~~pngi~~spd 159 (297)
T 3g4e_A 82 EQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHV-KKYFDQVDISNGLDWSLD 159 (297)
T ss_dssp TTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCE-EEEEEEESBEEEEEECTT
T ss_pred CCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCE-EEEeeccccccceEEcCC
Confidence 87654333321 23578899999999777642 244444443 333 223334455688999999
Q ss_pred CcEEEEEEcCCCeEEEEEcC--CCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCccee
Q 007234 211 GKYVLSSAVGERYIALWRTD--GVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL 287 (612)
Q Consensus 211 ~~~l~s~s~~d~~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~ 287 (612)
++.++.+...++.|.+|++. ++..........+.........+++. ++|++.++...++.|..||..+++.+
T Consensus 160 g~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d-----~~G~lwva~~~~~~v~~~d~~tG~~~ 233 (297)
T 3g4e_A 160 HKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCID-----AEGKLWVACYNGGRVIRLDPVTGKRL 233 (297)
T ss_dssp SCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEB-----TTSCEEEEEETTTEEEEECTTTCCEE
T ss_pred CCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEEC-----CCCCEEEEEcCCCEEEEEcCCCceEE
Confidence 99887766567899999974 44322111222222222345666776 88987777777888999998777654
No 197
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.39 E-value=6.6e-11 Score=132.99 Aligned_cols=235 Identities=11% Similarity=0.018 Sum_probs=146.8
Q ss_pred EEEEcCCCCEEEEEeCC-----CcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccccc
Q 007234 10 LTSFSPALDYFAICSGD-----ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (612)
Q Consensus 10 ~~~fspdg~~las~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (612)
.++|||||++||.++.+ .+|++||+.+|+.+.... +.. ....+.|.+.
T Consensus 167 ~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~-~~~------------------~~~~~~wspD-------- 219 (741)
T 1yr2_A 167 AWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL-KWV------------------KFSGLAWLGN-------- 219 (741)
T ss_dssp EEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE-EEE------------------ESCCCEESTT--------
T ss_pred eEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC-CCc------------------eeccEEEECC--------
Confidence 34999999999987653 359999999998764311 100 1123445442
Q ss_pred CCcEEEEEECCC--------------cEEEEEcCCCeE--EEEe-ccCCCCCeEEEEEecCCCEEEEEecCC-----cEE
Q 007234 85 GSSLLVLGTGGG--------------DVLALAVSAGQL--KWRL-SDCHPGGVSAISFATHGSCIYSAGADG-----MVC 142 (612)
Q Consensus 85 ~~~~l~~gs~~g--------------~I~vwd~~~~~~--~~~~-~~~h~~~V~~l~~sp~~~~l~s~s~dg-----~v~ 142 (612)
+.|+.++.++ .|++|++.++.. ...+ ...+...+.++.|+|||++|+..+.++ .|+
T Consensus 220 --~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~ 297 (741)
T 1yr2_A 220 --DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVH 297 (741)
T ss_dssp --SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEE
T ss_pred --CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEE
Confidence 2344444433 389999987752 1111 123334689999999999988777544 899
Q ss_pred EEECCCC--ceeEEEecCCCCeeEEEECCCCCEEEEeC------CeEEEEEcCCC--eeEEEEecCCCCEEEEEEeeCCc
Q 007234 143 EIDPLTG--SLLGKFRASTKGISCMAVSSDGKMLATAA------GQLKTFNCSDH--KKMQKFSGHPGAVRFMTFSDNGK 212 (612)
Q Consensus 143 iwd~~~~--~~~~~~~~~~~~v~~l~~spdg~~l~~~~------g~i~lwd~~~~--~~~~~~~~h~~~v~~l~~sp~~~ 212 (612)
+||+.++ +....+..+........ +|+|+.|+..+ +.|++||+.++ +....+..+...+..+.|+ ++.
T Consensus 298 ~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~ 375 (741)
T 1yr2_A 298 VARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNR 375 (741)
T ss_dssp EEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTE
T ss_pred EEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCE
Confidence 9999877 32455555555555543 48888887654 46999999884 3444445555556677777 455
Q ss_pred EEEEEEcCCCeEEEEEcC-CCccccceeeEeecC-CceeEEeEEecCCccCCCCcEEEEE-e---cCCcEEEEECCCcce
Q 007234 213 YVLSSAVGERYIALWRTD-GVKKQSASCVLAMEH-PAVFMDCRCIDNGGVDDAGLYVLAI-S---ETGVCYIWYGQNIEE 286 (612)
Q Consensus 213 ~l~s~s~~d~~i~vwd~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~t~-s---~dg~i~iwd~~~~~~ 286 (612)
.+++.. .|+..++|.++ .+.. ...+.. ....+..+.++ +++..++.. + ..++|++||+.+++.
T Consensus 376 lv~~~~-~dg~~~l~~~~~~g~~-----~~~l~~~~~~~v~~~~~s-----~d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 376 LFASYI-HDAKSQVLAFDLDGKP-----AGAVSLPGIGSASGLSGR-----PGDRHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp EEEEEE-ETTEEEEEEEETTSCE-----EEECBCSSSCEEEEEECC-----BTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred EEEEEE-ECCEEEEEEEeCCCCc-----eeeccCCCCeEEEEeecC-----CCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 555554 68887777655 2321 122222 23344555565 777655533 2 357999999988763
No 198
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.37 E-value=1.6e-09 Score=110.83 Aligned_cols=186 Identities=8% Similarity=-0.109 Sum_probs=124.6
Q ss_pred EEcCCCCEEEEEeC--CC---cEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCC
Q 007234 12 SFSPALDYFAICSG--DA---RIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGS 86 (612)
Q Consensus 12 ~fspdg~~las~s~--dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 86 (612)
..+|+++++.++.. .+ +|.+||..+++.+.++.....+ .+.++++ +
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spD---------------------------g 77 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHS---------------------------G 77 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCC---------------------------C
Confidence 45688887766653 23 8899999999988877643222 5555555 7
Q ss_pred cEEEEEE----------CCCcEEEEEcCCCeEEEEeccC------CCCCeEEEEEecCCCEEEEEec--CCcEEEEECCC
Q 007234 87 SLLVLGT----------GGGDVLALAVSAGQLKWRLSDC------HPGGVSAISFATHGSCIYSAGA--DGMVCEIDPLT 148 (612)
Q Consensus 87 ~~l~~gs----------~~g~I~vwd~~~~~~~~~~~~~------h~~~V~~l~~sp~~~~l~s~s~--dg~v~iwd~~~ 148 (612)
+.++++. .++.|.+||+.+.+.+..+..+ +......+.|+|||++|++++. ++.|.++| .+
T Consensus 78 ~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t 156 (373)
T 2mad_H 78 SEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QG 156 (373)
T ss_pred CEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CC
Confidence 7777776 3567999999998887665322 0123568999999999998874 57899999 99
Q ss_pred CceeEE-EecCCCCeeEEEECCCCCEE-EEeC--CeEEEEEcCCCeeEEEEe-----cCCCCE-EEEEEeeCCcEEEEEE
Q 007234 149 GSLLGK-FRASTKGISCMAVSSDGKML-ATAA--GQLKTFNCSDHKKMQKFS-----GHPGAV-RFMTFSDNGKYVLSSA 218 (612)
Q Consensus 149 ~~~~~~-~~~~~~~v~~l~~spdg~~l-~~~~--g~i~lwd~~~~~~~~~~~-----~h~~~v-~~l~~sp~~~~l~s~s 218 (612)
++.+.. +.... ++.+.|+++.. ++.+ |.+.++|. +++...... ....++ ....+.+++..++..+
T Consensus 157 ~~~~~~~i~~~~----~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 231 (373)
T 2mad_H 157 GSSDDQLLSSPT----CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPV 231 (373)
T ss_pred CCEEeEEcCCCc----eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEc
Confidence 988877 65322 24555665433 2222 89999999 887663322 112222 2346677766555554
Q ss_pred cCCCeEEEEEcCCCc
Q 007234 219 VGERYIALWRTDGVK 233 (612)
Q Consensus 219 ~~d~~i~vwd~~~~~ 233 (612)
..+.+.+.|+....
T Consensus 232 -~~~~v~vid~~~~~ 245 (373)
T 2mad_H 232 -YSGKILQADISAAG 245 (373)
T ss_pred -CCceEEEEeccCCc
Confidence 47889999987653
No 199
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.36 E-value=9.1e-10 Score=108.51 Aligned_cols=232 Identities=8% Similarity=0.019 Sum_probs=148.1
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEE
Q 007234 10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (612)
Q Consensus 10 ~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (612)
.++++|+|.++++...++.|..||.. ++. ..+.... .......+.+.+. +.+.
T Consensus 61 ~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~~----------------~~~~~~~i~~~~~---------g~l~ 113 (299)
T 2z2n_A 61 CLTISSDGEVWFTENAANKIGRITKK-GII-KEYTLPN----------------PDSAPYGITEGPN---------GDIW 113 (299)
T ss_dssp EEEECTTSCEEEEETTTTEEEEECTT-SCE-EEEECSS----------------TTCCEEEEEECTT---------SCEE
T ss_pred eEEECCCCCEEEeCCCCCeEEEECCC-CcE-EEEeCCC----------------cCCCceeeEECCC---------CCEE
Confidence 44999999988877778889999986 443 2232100 0112223333321 5556
Q ss_pred EEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEE-EecCCCCeeEEEEC
Q 007234 90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK-FRASTKGISCMAVS 168 (612)
Q Consensus 90 ~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~-~~~~~~~v~~l~~s 168 (612)
++...++.|.+||. ++.........+...+.++++.++|..+++...++.|..||. +++.... +......+.+++++
T Consensus 114 v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~ 191 (299)
T 2z2n_A 114 FTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKG 191 (299)
T ss_dssp EEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEEC
T ss_pred EEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEEC
Confidence 65566788999999 565543333335567899999999987777767789999998 6665443 22334568899999
Q ss_pred CCCCEEEEeC--CeEEEEEcCCCeeEEE-EecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecC
Q 007234 169 SDGKMLATAA--GQLKTFNCSDHKKMQK-FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEH 245 (612)
Q Consensus 169 pdg~~l~~~~--g~i~lwd~~~~~~~~~-~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~ 245 (612)
++|++.++.. +.|..||. +++.... +..+...+.++++.++|+.+++.. .++.|..||.. +... .+....
T Consensus 192 ~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~~~~i~~~d~~-g~~~----~~~~~~ 264 (299)
T 2z2n_A 192 NDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEW-GANKIGRLTSN-NIIE----EYPIQI 264 (299)
T ss_dssp TTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEET-TTTEEEEEETT-TEEE----EEECSS
T ss_pred CCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEecc-CCceEEEECCC-CceE----EEeCCC
Confidence 9999877764 79999999 6654321 233456789999999998666543 57889999983 3211 122222
Q ss_pred CceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCc
Q 007234 246 PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (612)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~ 284 (612)
....+..+.+ ++|.+.++.+ .+.+..++.++.
T Consensus 265 ~~~~~~~i~~------~~g~l~v~~~-~~~l~~~~~~~~ 296 (299)
T 2z2n_A 265 KSAEPHGICF------DGETIWFAME-CDKIGKLTLIKD 296 (299)
T ss_dssp SSCCEEEEEE------CSSCEEEEET-TTEEEEEEEC--
T ss_pred CCCccceEEe------cCCCEEEEec-CCcEEEEEcCcc
Confidence 2222333333 4566555544 567777776554
No 200
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.35 E-value=5.7e-10 Score=115.76 Aligned_cols=232 Identities=11% Similarity=0.024 Sum_probs=150.7
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEE
Q 007234 10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (612)
Q Consensus 10 ~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (612)
.++|+|+|+++++...++.|++||..++.......... . .. +.|.+. +..+
T Consensus 135 ~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~-~------------------~~-ia~~~~---------g~~l 185 (409)
T 3hrp_A 135 GIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFK-G------------------GK-PAVTKD---------KQRV 185 (409)
T ss_dssp EEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCC-B------------------CB-CEECTT---------SSEE
T ss_pred EEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCC-C------------------Cc-eeEecC---------CCcE
Confidence 55999999988777778999999998887765543211 1 11 333332 6677
Q ss_pred EEEECCC--cEEEEEcCCCeEEEEe---ccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEE----EecCCC
Q 007234 90 VLGTGGG--DVLALAVSAGQLKWRL---SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK----FRASTK 160 (612)
Q Consensus 90 ~~gs~~g--~I~vwd~~~~~~~~~~---~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~----~~~~~~ 160 (612)
+++..++ .|.+|+...+.....+ ...+...+.+++++|++..|+.+..++.|+.||..++..... ..+...
T Consensus 186 ~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~ 265 (409)
T 3hrp_A 186 YSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLG 265 (409)
T ss_dssp EEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCC
T ss_pred EEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCC
Confidence 8887766 6999998876543222 121446678999999555666687889999999987753222 111112
Q ss_pred C--eeEEEECCCCCEEEEe-C--CeEEEEEcCCCeeEEEEecCC---------------CCEEEEEEeeCCcEEEEEEc-
Q 007234 161 G--ISCMAVSSDGKMLATA-A--GQLKTFNCSDHKKMQKFSGHP---------------GAVRFMTFSDNGKYVLSSAV- 219 (612)
Q Consensus 161 ~--v~~l~~spdg~~l~~~-~--g~i~lwd~~~~~~~~~~~~h~---------------~~v~~l~~sp~~~~l~s~s~- 219 (612)
. ...++|+|++..|+.+ . +.|+.|+.... +..+.++. .....++++|+|++++ +..
T Consensus 266 ~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyv-ad~~ 342 (409)
T 3hrp_A 266 TNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYI-VDGF 342 (409)
T ss_dssp CSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEE-EETT
T ss_pred CCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEE-EeCC
Confidence 1 1399999964444444 3 79999997654 33444443 3478999999998544 445
Q ss_pred CCCeEEEEEcCCCccccceeeEeecC------------CceeEEeEEecCCccCCCCcEEEEEecCCcEEEEEC
Q 007234 220 GERYIALWRTDGVKKQSASCVLAMEH------------PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (612)
Q Consensus 220 ~d~~i~vwd~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~ 281 (612)
.++.|+.|++.++... .+..... .-.....++++ ++|.++++-..+++|+.+++
T Consensus 343 ~~~~I~~~~~~~G~v~---~~~g~~~~~g~~~g~~~~~~~~~P~giavd-----~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 343 KGYCLRKLDILDGYVS---TVAGQVDVASQIDGTPLEATFNYPYDICYD-----GEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp TTCEEEEEETTTTEEE---EEEECTTCBSCCCBSTTTCCBSSEEEEEEC-----SSSEEEEEESTTCEEEEEEE
T ss_pred CCCEEEEEECCCCEEE---EEeCCCCCCCcCCCChhceEeCCceEEEEc-----CCCCEEEEECCCCeEEEEEe
Confidence 5789999997766432 1111000 01234556665 78877777777888887764
No 201
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.35 E-value=1.7e-09 Score=110.53 Aligned_cols=241 Identities=12% Similarity=0.072 Sum_probs=153.4
Q ss_pred EEEcCCCCEEEEEe----------CCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccc
Q 007234 11 TSFSPALDYFAICS----------GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (612)
Q Consensus 11 ~~fspdg~~las~s----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~ 80 (612)
++|||||++++.+. .++.|.+||..+++.+.++......-. ........+.|.+.
T Consensus 71 i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~-----------~~g~~p~~~~~spD---- 135 (373)
T 2mad_H 71 PVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRF-----------DVGPYSWMNANTPN---- 135 (373)
T ss_pred eEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCcccc-----------ccCCCccceEECCC----
Confidence 39999999988875 367899999999988887753200000 00001112333333
Q ss_pred ccccCCcEEEEEEC--CCcEEEEEcCCCeEEEE-eccCCCCCeEEEEEecCC-CEEEEEecCCcEEEEECCCCceeEEEe
Q 007234 81 KRKLGSSLLVLGTG--GGDVLALAVSAGQLKWR-LSDCHPGGVSAISFATHG-SCIYSAGADGMVCEIDPLTGSLLGKFR 156 (612)
Q Consensus 81 ~~~~~~~~l~~gs~--~g~I~vwd~~~~~~~~~-~~~~h~~~V~~l~~sp~~-~~l~s~s~dg~v~iwd~~~~~~~~~~~ 156 (612)
+++++++.. ++.|.++| .+++.+.. +.. .. ++.+.|++ +.+++.+.||.+.++|. +++......
T Consensus 136 -----G~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~--~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~ 203 (373)
T 2mad_H 136 -----NADLLFFQFAAGPAVGLVV-QGGSSDDQLLSS--PT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGL 203 (373)
T ss_pred -----CCEEEEEecCCCCeEEEEE-CCCCEEeEEcCC--Cc---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEe
Confidence 778888774 46799999 99988766 532 12 24556655 44667778999999999 887764322
Q ss_pred -----cCCCC-eeEEEECCCCCEE-EEeC-CeEEEEEcCCCe--eEEEEec----------CCCCEEEEEEeeCCcEEEE
Q 007234 157 -----ASTKG-ISCMAVSSDGKML-ATAA-GQLKTFNCSDHK--KMQKFSG----------HPGAVRFMTFSDNGKYVLS 216 (612)
Q Consensus 157 -----~~~~~-v~~l~~spdg~~l-~~~~-g~i~lwd~~~~~--~~~~~~~----------h~~~v~~l~~sp~~~~l~s 216 (612)
....+ .....+.+++..+ ++.. +.+.+.|+.++. .+..+.- .......+.++|+++.++.
T Consensus 204 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV 283 (373)
T 2mad_H 204 VGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYL 283 (373)
T ss_pred ccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEE
Confidence 11122 1234556665443 3333 899999987652 2333321 1222445788999988877
Q ss_pred EEc---------CCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCc-EEEEEe-cCCcEEEEECCCcc
Q 007234 217 SAV---------GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGL-YVLAIS-ETGVCYIWYGQNIE 285 (612)
Q Consensus 217 ~s~---------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~t~s-~dg~i~iwd~~~~~ 285 (612)
+.. .++.|.++|+.+.+.. ..+.... ....+.++ |||+ +++++. .++.|.+||..+++
T Consensus 284 ~~~~~~~~~~~~~~~~V~VID~~t~~vv-----~~i~~g~-~p~~i~~s-----~Dg~~~l~v~~~~~~~V~ViD~~t~~ 352 (373)
T 2mad_H 284 LTSEQSAWKLHAAAKEVTSVTGLVGQTS-----SQISLGH-DVDAISVA-----QDGGPDLYALSAGTEVLHIYDAGAGD 352 (373)
T ss_pred EeccCCcccccCCCCeEEEEECCCCEEE-----EEEECCC-CcCeEEEC-----CCCCeEEEEEcCCCCeEEEEECCCCC
Confidence 642 1357999999887643 2232222 23455676 9999 777777 48999999999998
Q ss_pred eecc
Q 007234 286 ELRN 289 (612)
Q Consensus 286 ~~~~ 289 (612)
.++.
T Consensus 353 vv~~ 356 (373)
T 2mad_H 353 QDQS 356 (373)
T ss_pred EEee
Confidence 8765
No 202
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.34 E-value=6.8e-10 Score=110.48 Aligned_cols=191 Identities=10% Similarity=0.081 Sum_probs=125.4
Q ss_pred CcEEEE-------EECCCcEEEEEcCCCeEEEEec---cCCCCCeEEEEEecC-CCEEEEEecCCcEEEEECCCCceeEE
Q 007234 86 SSLLVL-------GTGGGDVLALAVSAGQLKWRLS---DCHPGGVSAISFATH-GSCIYSAGADGMVCEIDPLTGSLLGK 154 (612)
Q Consensus 86 ~~~l~~-------gs~~g~I~vwd~~~~~~~~~~~---~~h~~~V~~l~~sp~-~~~l~s~s~dg~v~iwd~~~~~~~~~ 154 (612)
+.++++ ++.++.|.+||+.+++...... .++...+.+++++++ |+ ++.++..+.|.+||.. ++....
T Consensus 29 g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~-l~v~~~~~~l~~~d~~-g~~~~~ 106 (314)
T 1pjx_A 29 GDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQ-LFVADMRLGLLVVQTD-GTFEEI 106 (314)
T ss_dssp SCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSE-EEEEETTTEEEEEETT-SCEEEC
T ss_pred CCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCc-EEEEECCCCEEEEeCC-CCEEEE
Confidence 556666 5778899999998887643221 124467899999999 65 4455455579999988 665432
Q ss_pred -EecC----CCCeeEEEECCCCCEEEEeC-----------------CeEEEEEcCCCeeEEEEecCCCCEEEEEEe----
Q 007234 155 -FRAS----TKGISCMAVSSDGKMLATAA-----------------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFS---- 208 (612)
Q Consensus 155 -~~~~----~~~v~~l~~spdg~~l~~~~-----------------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~s---- 208 (612)
.... ...+.+++++|+|+++++.. +.|+.||.. ++... +..+......++|+
T Consensus 107 ~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~-~~~~~~~~~~i~~~~~~d 184 (314)
T 1pjx_A 107 AKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQ-VDTAFQFPNGIAVRHMND 184 (314)
T ss_dssp CSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEE-EEEEESSEEEEEEEECTT
T ss_pred EeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEE-eccCCCCcceEEEecccC
Confidence 2211 13578999999999888765 256677765 54433 33344556889999
Q ss_pred eCCcEEEEEEcCCCeEEEEEcC-CCccccceeeEeecCCc-eeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcc
Q 007234 209 DNGKYVLSSAVGERYIALWRTD-GVKKQSASCVLAMEHPA-VFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE 285 (612)
Q Consensus 209 p~~~~l~s~s~~d~~i~vwd~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~ 285 (612)
|+++.++.+...++.|.+|++. .+..........+.... .....++++ ++|++.++...++.|.+||..+++
T Consensus 185 ~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d-----~~G~l~v~~~~~~~i~~~d~~~g~ 258 (314)
T 1pjx_A 185 GRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFD-----EDNNLLVANWGSSHIEVFGPDGGQ 258 (314)
T ss_dssp SCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEB-----TTCCEEEEEETTTEEEEECTTCBS
T ss_pred CCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEEC-----CCCCEEEEEcCCCEEEEEcCCCCc
Confidence 9997776665467899999986 33321111112222221 334556676 889888887788899999876554
No 203
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.33 E-value=1.3e-10 Score=130.71 Aligned_cols=184 Identities=12% Similarity=0.020 Sum_probs=121.5
Q ss_pred CcEEEEEECC-C----cEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCc--------------EEEEEC
Q 007234 86 SSLLVLGTGG-G----DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGM--------------VCEIDP 146 (612)
Q Consensus 86 ~~~l~~gs~~-g----~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~--------------v~iwd~ 146 (612)
++.|+.++.+ | .|++||+.+++.+.... +...+.+++|+|| +.|+.++.|+. |++|++
T Consensus 174 G~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~--~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~l 250 (741)
T 1yr2_A 174 GRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL--KWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRL 250 (741)
T ss_dssp SSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE--EEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEET
T ss_pred CCEEEEEEcCCCCceEEEEEEECCCCCCCCccC--CCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEEC
Confidence 6677766543 4 49999999998764321 2222367899999 98888876654 899999
Q ss_pred CCCce--eEEEecC--CCCeeEEEECCCCCEEEEeC--C-----eEEEEEcCCC--eeEEEEecCCCCEEEEEEeeCCcE
Q 007234 147 LTGSL--LGKFRAS--TKGISCMAVSSDGKMLATAA--G-----QLKTFNCSDH--KKMQKFSGHPGAVRFMTFSDNGKY 213 (612)
Q Consensus 147 ~~~~~--~~~~~~~--~~~v~~l~~spdg~~l~~~~--g-----~i~lwd~~~~--~~~~~~~~h~~~v~~l~~sp~~~~ 213 (612)
.+++. ...+... ...+.++.|+|||++|+..+ + .|++||+.++ +....+..+...+.... +|+|+.
T Consensus 251 gt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~ 329 (741)
T 1yr2_A 251 GTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQ 329 (741)
T ss_dssp TSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTE
T ss_pred CCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCE
Confidence 87752 2233332 23588999999999888655 3 8999999887 31456666665555553 588888
Q ss_pred EEEEEcC---CCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECC
Q 007234 214 VLSSAVG---ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (612)
Q Consensus 214 l~s~s~~---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~ 282 (612)
|+..+.. ++.|.+||+.++. .. ......+....+..+.+. ++.++++...||..++|...
T Consensus 330 l~~~s~~~~~~~~l~~~d~~~~~-~~--~~~l~~~~~~~l~~~~~~------~~~lv~~~~~dg~~~l~~~~ 392 (741)
T 1yr2_A 330 LWFVSGDGAPLKKIVRVDLSGST-PR--FDTVVPESKDNLESVGIA------GNRLFASYIHDAKSQVLAFD 392 (741)
T ss_dssp EEEEECTTCTTCEEEEEECSSSS-CE--EEEEECCCSSEEEEEEEE------BTEEEEEEEETTEEEEEEEE
T ss_pred EEEEECCCCCCCEEEEEeCCCCc-cc--cEEEecCCCCeEEEEEEE------CCEEEEEEEECCEEEEEEEe
Confidence 8877632 3459999988752 10 112223444445444443 45778888889987777543
No 204
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.33 E-value=1.7e-10 Score=128.48 Aligned_cols=233 Identities=12% Similarity=0.053 Sum_probs=148.9
Q ss_pred EEEcCCCCEEEEEeC-----CCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccC
Q 007234 11 TSFSPALDYFAICSG-----DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLG 85 (612)
Q Consensus 11 ~~fspdg~~las~s~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 85 (612)
++|||||++||.+.. ..+|++||+.+|+.+.... .. .....+.|. .
T Consensus 134 ~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~------------------~k~~~~~Ws-D--------- 184 (693)
T 3iuj_A 134 LSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-KD------------------VKFSGISWL-G--------- 184 (693)
T ss_dssp EEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-EE------------------EESCCCEEE-T---------
T ss_pred EEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-CC------------------ceeccEEEe-C---------
Confidence 389999999995432 2579999999998654311 00 001234455 2
Q ss_pred CcEEEEEECCC-------------cEEEEEcCCCeE----EEEeccC-CCCCeEEEEEecCCCEEEEEec----CCcEEE
Q 007234 86 SSLLVLGTGGG-------------DVLALAVSAGQL----KWRLSDC-HPGGVSAISFATHGSCIYSAGA----DGMVCE 143 (612)
Q Consensus 86 ~~~l~~gs~~g-------------~I~vwd~~~~~~----~~~~~~~-h~~~V~~l~~sp~~~~l~s~s~----dg~v~i 143 (612)
++.|+.++.+. .|++|++.++.. +... .. |...+.++.|+|||++|+.... ++.|++
T Consensus 185 g~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~-~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~ 263 (693)
T 3iuj_A 185 NEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGA-IPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYV 263 (693)
T ss_dssp TTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESC-SGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEE
T ss_pred CCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEec-CCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEE
Confidence 56677776663 399999987652 2211 23 4556789999999998754432 258999
Q ss_pred EECCCCc-eeEEEecCCCCeeEEEECCCCCEEEE-eC-----CeEEEEEcCCCee--EEEEecCCCCEEEEEEeeCCcEE
Q 007234 144 IDPLTGS-LLGKFRASTKGISCMAVSSDGKMLAT-AA-----GQLKTFNCSDHKK--MQKFSGHPGAVRFMTFSDNGKYV 214 (612)
Q Consensus 144 wd~~~~~-~~~~~~~~~~~v~~l~~spdg~~l~~-~~-----g~i~lwd~~~~~~--~~~~~~h~~~v~~l~~sp~~~~l 214 (612)
+|+.++. ....+..+....... ++++|..++. +. +.|..+|+.++.. ...+..|...+. .|++++++|
T Consensus 264 ~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~l 340 (693)
T 3iuj_A 264 KDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYL 340 (693)
T ss_dssp EETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEE
T ss_pred EECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEE
Confidence 9998764 455566555555554 6666665554 32 5799999988754 345666766665 899999988
Q ss_pred EEEEcCCC--eEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecC----CcEEEEECCCcce
Q 007234 215 LSSAVGER--YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET----GVCYIWYGQNIEE 286 (612)
Q Consensus 215 ~s~s~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~d----g~i~iwd~~~~~~ 286 (612)
+.....++ .|.+|++.++... ...+.... .+....++ +++..++....+ +.+..||+.+++.
T Consensus 341 v~~~~~~g~~~l~~~d~~g~~~~----~l~~p~~~-~~~~~~~~-----~d~~~l~~~~ss~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 341 FAEYMVDATARVEQFDYEGKRVR----EVALPGLG-SVSGFNGK-----HDDPALYFGFENYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp EEEEEETTEEEEEEECTTSCEEE----EECCSSSS-EEEECCCC-----TTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred EEEEEECCeeEEEEEECCCCeeE----EeecCCCc-eEEeeecC-----CCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence 88765555 6888888754321 12222222 22333333 677666655444 7899999877653
No 205
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.32 E-value=2.4e-09 Score=105.51 Aligned_cols=231 Identities=10% Similarity=0.041 Sum_probs=152.6
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEE
Q 007234 10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (612)
Q Consensus 10 ~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (612)
+++++++|+++++...++.|.+||.. ++... +.... . ......+.+.+. +.+.
T Consensus 24 ~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~~---------------~-~~~~~~i~~~~~---------g~l~ 76 (300)
T 2qc5_A 24 GITSSEDGKVWFTQHKANKISSLDQS-GRIKE-FEVPT---------------P-DAKVMCLIVSSL---------GDIW 76 (300)
T ss_dssp EEEECTTSCEEEEETTTTEEEEECTT-SCEEE-EECSS---------------T-TCCEEEEEECTT---------SCEE
T ss_pred eeeECCCCCEEEEcCCCCeEEEECCC-CceEE-EECCC---------------C-CCcceeEEECCC---------CCEE
Confidence 44999999988877778999999987 66543 22100 0 112233333321 5555
Q ss_pred EEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEE-EecCCCCeeEEEEC
Q 007234 90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK-FRASTKGISCMAVS 168 (612)
Q Consensus 90 ~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~-~~~~~~~v~~l~~s 168 (612)
++...++.|..||.. ++............+.++++.++|+.+++...++.|..||.. ++.... +......+.+++++
T Consensus 77 v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d 154 (300)
T 2qc5_A 77 FTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLG 154 (300)
T ss_dssp EEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEEC
T ss_pred EEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEEC
Confidence 555557889999988 655422223344678999999999877777668899999987 655422 22234578999999
Q ss_pred CCCCEEEEeC--CeEEEEEcCCCeeEE-EEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecC
Q 007234 169 SDGKMLATAA--GQLKTFNCSDHKKMQ-KFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEH 245 (612)
Q Consensus 169 pdg~~l~~~~--g~i~lwd~~~~~~~~-~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~ 245 (612)
++|++.++.. +.|..||. +++... ....+...+..+++.++|..+++.. ..+.|.+|+. ++... ......
T Consensus 155 ~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~-~~~~i~~~~~-~g~~~----~~~~~~ 227 (300)
T 2qc5_A 155 SDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEI-MGNKIGRITT-TGEIS----EYDIPT 227 (300)
T ss_dssp TTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEET-TTTEEEEECT-TCCEE----EEECSS
T ss_pred CCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEcc-CCCEEEEEcC-CCcEE----EEECCC
Confidence 9999777664 78999998 555433 1223445688999999998666553 5678999998 33322 122222
Q ss_pred CceeEEeEEecCCccCCCCcEEEEEecCCcEEEEEC
Q 007234 246 PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (612)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~ 281 (612)
.......+++. ++|+..++...++.|..|+.
T Consensus 228 ~~~~~~~i~~d-----~~g~l~v~~~~~~~i~~~~~ 258 (300)
T 2qc5_A 228 PNARPHAITAG-----KNSEIWFTEWGANQIGRITN 258 (300)
T ss_dssp TTCCEEEEEEC-----STTCEEEEETTTTEEEEECT
T ss_pred CCCCceEEEEC-----CCCCEEEeccCCCeEEEECC
Confidence 23334556665 78886666666789999987
No 206
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.31 E-value=4.7e-10 Score=113.56 Aligned_cols=239 Identities=13% Similarity=0.140 Sum_probs=158.3
Q ss_pred EEEcCCCCEEEEEe----------CCCcEEEEECCCCcEEEEeeccC-------CccccccccccccccccccceeEEEe
Q 007234 11 TSFSPALDYFAICS----------GDARIKIWDTLKGQVQTEFADIA-------STETTSLYGNRLEREHLSVDYTCMKW 73 (612)
Q Consensus 11 ~~fspdg~~las~s----------~dg~i~iwd~~~~~~~~~~~~~~-------~~~~~~~~s~~~~~~~~~~~~~~~~w 73 (612)
+++||||++++.+. .++.|.+||..+++.+.++.... .....+.|+++
T Consensus 83 va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spD--------------- 147 (386)
T 3sjl_D 83 PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPD--------------- 147 (386)
T ss_dssp EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTT---------------
T ss_pred EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCC---------------
Confidence 49999999887665 36789999999999998875322 12334444444
Q ss_pred eecccccccccCCcEEEEEEC--CCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCC-Cc
Q 007234 74 LSVDRKKKRKLGSSLLVLGTG--GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT-GS 150 (612)
Q Consensus 74 ~~~~~~~~~~~~~~~l~~gs~--~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~-~~ 150 (612)
+++++++.. ++.|.++|+.+++.+.++... .+ ...+....+.+++.+.||.+.+.++.+ ++
T Consensus 148 ------------Gk~lyVan~~~~~~VsVID~~t~~vv~tI~v~---g~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~ 211 (386)
T 3sjl_D 148 ------------GKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVP---DC-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGT 211 (386)
T ss_dssp ------------SSEEEEEECSSSCEEEEEETTTTEEEEEEECC---SE-EEEEEEETTEEEEEETTSCEEEEECCSSSC
T ss_pred ------------CCEEEEEEcCCCCeEEEEECCCCcEEEEEECC---Cc-ceeecCCCceeEEECCCCCEEEEECCCCCe
Confidence 778888764 578999999999998877421 12 222333456677888999999999876 55
Q ss_pred eeEEEecC----CCCe-eEEEE-CCCCCEEEEeC-CeEEEEEcCCCe--eEEEEe---------c-CCCCEEEEEEeeCC
Q 007234 151 LLGKFRAS----TKGI-SCMAV-SSDGKMLATAA-GQLKTFNCSDHK--KMQKFS---------G-HPGAVRFMTFSDNG 211 (612)
Q Consensus 151 ~~~~~~~~----~~~v-~~l~~-spdg~~l~~~~-g~i~lwd~~~~~--~~~~~~---------~-h~~~v~~l~~sp~~ 211 (612)
........ ..++ ....| .++|+++++.. |.|++.|+.++. .+..+. + .......++++|++
T Consensus 212 v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~ 291 (386)
T 3sjl_D 212 PEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRAL 291 (386)
T ss_dssp CEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTT
T ss_pred EEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCC
Confidence 53322111 1122 22455 47888777666 999999997653 333332 0 11223347789999
Q ss_pred cEEEEEEcC---------CCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCc-EEEEEe-cCCcEEEEE
Q 007234 212 KYVLSSAVG---------ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGL-YVLAIS-ETGVCYIWY 280 (612)
Q Consensus 212 ~~l~s~s~~---------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~t~s-~dg~i~iwd 280 (612)
+.++..-.. .+.|.+.|+.+.+... .....+ ....+.++ +|++ +|++.+ .++.|.++|
T Consensus 292 ~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~---~i~vg~---~~~~lavs-----~D~~~~ly~tn~~~~~VsViD 360 (386)
T 3sjl_D 292 DRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLA---KFEMGH---EIDSINVS-----QDEKPLLYALSTGDKTLYIHD 360 (386)
T ss_dssp TEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEE---EEEEEE---EECEEEEC-----SSSSCEEEEEETTTTEEEEEE
T ss_pred CeEEEEeccccccccCCCCCEEEEEECCCCeEEE---EEECCC---CcceEEEC-----CCCCeEEEEEcCCCCeEEEEE
Confidence 888776421 2579999999887541 222222 23345666 8886 676655 489999999
Q ss_pred CCCcceecccC
Q 007234 281 GQNIEELRNTK 291 (612)
Q Consensus 281 ~~~~~~~~~~~ 291 (612)
..+++.++.++
T Consensus 361 ~~t~k~~~~i~ 371 (386)
T 3sjl_D 361 AESGEELRSVN 371 (386)
T ss_dssp TTTCCEEEEEC
T ss_pred CCCCcEEEEec
Confidence 99999887554
No 207
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.30 E-value=1.8e-10 Score=112.08 Aligned_cols=194 Identities=8% Similarity=-0.024 Sum_probs=132.6
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEE
Q 007234 10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (612)
Q Consensus 10 ~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (612)
+++++|+|+++++.. ++.|.+||..++... .+.... ......+.+.+. +.++
T Consensus 71 ~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~-~~~~~~-----------------~~~p~~i~~~~~---------g~l~ 122 (270)
T 1rwi_B 71 GLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT-VLPFDG-----------------LNYPEGLAVDTQ---------GAVY 122 (270)
T ss_dssp CEEECTTCCEEEEET-TTEEEEECTTCSCCE-ECCCCS-----------------CSSEEEEEECTT---------CCEE
T ss_pred eeEECCCCCEEEEcC-CCEEEEEeCCCceEe-eeecCC-----------------cCCCcceEECCC---------CCEE
Confidence 349999999766665 889999998765433 221100 012233444331 6666
Q ss_pred EEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEEEECC
Q 007234 90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSS 169 (612)
Q Consensus 90 ~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~sp 169 (612)
++...++.|.+|+..+....... ......+.+++++++|+.+++...++.|.+||...+............+.++++++
T Consensus 123 v~~~~~~~i~~~~~~~~~~~~~~-~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~ 201 (270)
T 1rwi_B 123 VADRGNNRVVKLAAGSKTQTVLP-FTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDE 201 (270)
T ss_dssp EEEGGGTEEEEECTTCCSCEECC-CCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECT
T ss_pred EEECCCCEEEEEECCCceeEeec-cccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECC
Confidence 66667788999987665443222 22334678999999998777766788999999877654433333336789999999
Q ss_pred CCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCc
Q 007234 170 DGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (612)
Q Consensus 170 dg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~ 233 (612)
+|.++++.. +.|.+||..+.........+...+.+++++++|+.+++.. .++.|+++++...+
T Consensus 202 ~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 202 AGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADR-GNDRVVKLTSLEHH 266 (270)
T ss_dssp TCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEG-GGTEEEEECCCGGG
T ss_pred CCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEEC-CCCEEEEEcCCCcc
Confidence 998777765 7899999876554332223345689999999998666654 78999999987654
No 208
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.29 E-value=3.6e-09 Score=106.21 Aligned_cols=192 Identities=13% Similarity=0.015 Sum_probs=127.0
Q ss_pred eEEEeeecccccccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCC
Q 007234 69 TCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT 148 (612)
Q Consensus 69 ~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~ 148 (612)
....|.+.. +.++++...++.|..||..+++... +. ....+.++.|+|+|+++++. .+ .|.+||..+
T Consensus 52 egp~~~~~~--------~~l~~~d~~~~~i~~~d~~~~~~~~-~~--~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~ 118 (326)
T 2ghs_A 52 EGPTFDPAS--------GTAWWFNILERELHELHLASGRKTV-HA--LPFMGSALAKISDSKQLIAS-DD-GLFLRDTAT 118 (326)
T ss_dssp EEEEEETTT--------TEEEEEEGGGTEEEEEETTTTEEEE-EE--CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTT
T ss_pred cCCeEeCCC--------CEEEEEECCCCEEEEEECCCCcEEE-EE--CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCC
Confidence 345676543 5667777788899999999887542 21 34679999999999866654 44 499999988
Q ss_pred CceeEEEecC----CCCeeEEEECCCCCEEEEeC--------CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEE
Q 007234 149 GSLLGKFRAS----TKGISCMAVSSDGKMLATAA--------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLS 216 (612)
Q Consensus 149 ~~~~~~~~~~----~~~v~~l~~spdg~~l~~~~--------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s 216 (612)
++........ ...+..++++|+|+++++.. +.|+.++ +++.. .+..+......++|+|+++.++.
T Consensus 119 g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~~~~~~i~~s~dg~~lyv 195 (326)
T 2ghs_A 119 GVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADISIPNSICFSPDGTTGYF 195 (326)
T ss_dssp CCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEESSEEEEEECTTSCEEEE
T ss_pred CcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCCcccCCeEEcCCCCEEEE
Confidence 8754332211 13588999999999877653 3566666 55543 33333445788999999998776
Q ss_pred EEcCCCeEEEEEcC--CC-ccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEEC
Q 007234 217 SAVGERYIALWRTD--GV-KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (612)
Q Consensus 217 ~s~~d~~i~vwd~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~ 281 (612)
+...++.|.+|++. ++ ..........+.........+++. ++|.+.++...++.|..||.
T Consensus 196 ~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d-----~~G~lwva~~~~~~v~~~d~ 258 (326)
T 2ghs_A 196 VDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCD-----AEGHIWNARWGEGAVDRYDT 258 (326)
T ss_dssp EETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEEC-----TTSCEEEEEETTTEEEEECT
T ss_pred EECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEEC-----CCCCEEEEEeCCCEEEEECC
Confidence 65567899999986 44 321111122222223344556665 78887776666778888876
No 209
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.28 E-value=4.2e-11 Score=121.71 Aligned_cols=183 Identities=8% Similarity=0.070 Sum_probs=127.8
Q ss_pred ccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccccc
Q 007234 5 NIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (612)
Q Consensus 5 ~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (612)
+++.| ++++...++++|+.++ ++||++.+.+.... ..... |.+..... ... ++.+.| +
T Consensus 39 ~~nlL--ais~~~gll~a~~~~~-l~v~~~~~l~~~~~--~~~~~-----~~~~~~~~-lp~-V~~l~f---d------- 96 (388)
T 1xip_A 39 SLQNL--DISNSKSLFVAASGSK-AVVGELQLLRDHIT--SDSTP-----LTFKWEKE-IPD-VIFVCF---H------- 96 (388)
T ss_dssp CCBCE--EEETTTTEEEEEETTE-EEEEEHHHHHHHHH--SSSCC-----CCCSEEEE-CTT-EEEEEE---E-------
T ss_pred cccEE--EEcCCCCEEEEeCCCE-EEEEEhhHhhhhhc--ccccc-----ccceEEee-CCC-eeEEEE---C-------
Confidence 46656 9999999999999884 66798764431000 00000 00000001 112 556666 2
Q ss_pred CCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeE
Q 007234 85 GSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISC 164 (612)
Q Consensus 85 ~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~ 164 (612)
+..++++ .+|.|++||+.+-...... ..|..++.++.+.+. .+++++.||.|.+||+.+++... +...|+|
T Consensus 97 -~~~L~v~-~~~~l~v~dv~sl~~~~~~-~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~ 167 (388)
T 1xip_A 97 -GDQVLVS-TRNALYSLDLEELSEFRTV-TSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTS 167 (388)
T ss_dssp -TTEEEEE-ESSEEEEEESSSTTCEEEE-EECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----EEESEEE
T ss_pred -CCEEEEE-cCCcEEEEEchhhhccCcc-ceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----ccCCceE
Confidence 7788888 8899999999876544333 457778988887654 38889999999999999887653 3358999
Q ss_pred EEECCCCCEEEEeCCeEEEEEcCCCee--EEEE------e---cCCCCEEEEEEeeCCcEEEEEE
Q 007234 165 MAVSSDGKMLATAAGQLKTFNCSDHKK--MQKF------S---GHPGAVRFMTFSDNGKYVLSSA 218 (612)
Q Consensus 165 l~~spdg~~l~~~~g~i~lwd~~~~~~--~~~~------~---~h~~~v~~l~~sp~~~~l~s~s 218 (612)
++|+|+|..+..+.|++++|+...++. .+++ . +|...|.++.|.+++.++++-+
T Consensus 168 v~WSpkG~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 168 FDVTNSQLAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp EEECSSEEEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred EEEcCCceEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 999999943333339999999988875 5566 2 4788899999999999887643
No 210
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.27 E-value=3.2e-09 Score=105.05 Aligned_cols=220 Identities=11% Similarity=0.070 Sum_probs=137.5
Q ss_pred EEEEcCCCC-EEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcE
Q 007234 10 LTSFSPALD-YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (612)
Q Consensus 10 ~~~fspdg~-~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (612)
+..|+|++. ++++...++.|..||..+++.. .+. ... ...++.+.+. +.
T Consensus 17 gp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~------------------~~~~i~~~~d---------G~- 66 (297)
T 3g4e_A 17 SPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVT-MDA------------------PVSSVALRQS---------GG- 66 (297)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEE-CSS------------------CEEEEEEBTT---------SS-
T ss_pred CCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEe-CCC------------------ceEEEEECCC---------CC-
Confidence 348999655 5555566889999999887653 232 111 2334444332 55
Q ss_pred EEEEECCCcEEEEEcCCCeEEEEecc--C-CCCCeEEEEEecCCCEEEEEecC-----------CcEEEEECCCCceeEE
Q 007234 89 LVLGTGGGDVLALAVSAGQLKWRLSD--C-HPGGVSAISFATHGSCIYSAGAD-----------GMVCEIDPLTGSLLGK 154 (612)
Q Consensus 89 l~~gs~~g~I~vwd~~~~~~~~~~~~--~-h~~~V~~l~~sp~~~~l~s~s~d-----------g~v~iwd~~~~~~~~~ 154 (612)
++++. ++.|.+||..+++....... . ....+++++++|+|+++++...+ +.|..+|.. ++...
T Consensus 67 l~v~~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~- 143 (297)
T 3g4e_A 67 YVATI-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKK- 143 (297)
T ss_dssp EEEEE-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEE-
T ss_pred EEEEE-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEE-
Confidence 44454 56799999998875422211 1 12458899999999966654321 344444532 33332
Q ss_pred EecCCCCeeEEEECCCCCEEEEeC---CeEEEEEc--CCCee-----EEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeE
Q 007234 155 FRASTKGISCMAVSSDGKMLATAA---GQLKTFNC--SDHKK-----MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYI 224 (612)
Q Consensus 155 ~~~~~~~v~~l~~spdg~~l~~~~---g~i~lwd~--~~~~~-----~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i 224 (612)
+.........++|+||++.|+.+. +.|.+||+ .++.. +..+..+......+++.++|++.++.. .++.|
T Consensus 144 ~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~-~~~~v 222 (297)
T 3g4e_A 144 YFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACY-NGGRV 222 (297)
T ss_dssp EEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEE-TTTEE
T ss_pred EeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEc-CCCEE
Confidence 333334568999999999776554 78999997 45543 223333445678999999998766654 57889
Q ss_pred EEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEec
Q 007234 225 ALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE 272 (612)
Q Consensus 225 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~ 272 (612)
.+||..+++.. ..+..+...+.+++|. .|+++.|++++.
T Consensus 223 ~~~d~~tG~~~-----~~i~~p~~~~t~~~f~----g~d~~~L~vt~~ 261 (297)
T 3g4e_A 223 IRLDPVTGKRL-----QTVKLPVDKTTSCCFG----GKNYSEMYVTCA 261 (297)
T ss_dssp EEECTTTCCEE-----EEEECSSSBEEEEEEE----SGGGCEEEEEEB
T ss_pred EEEcCCCceEE-----EEEECCCCCceEEEEe----CCCCCEEEEEcC
Confidence 99999877643 3333443445666674 256666666554
No 211
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.25 E-value=6.5e-09 Score=102.33 Aligned_cols=229 Identities=10% Similarity=0.032 Sum_probs=147.1
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEE
Q 007234 10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (612)
Q Consensus 10 ~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (612)
.++++++|+++++...++.|..||.. ++.. .+.... . ......+...+. +.+.
T Consensus 66 ~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~-~~~~~~---------------~-~~~~~~i~~~~~---------g~l~ 118 (300)
T 2qc5_A 66 CLIVSSLGDIWFTENGANKIGKLSKK-GGFT-EYPLPQ---------------P-DSGPYGITEGLN---------GDIW 118 (300)
T ss_dssp EEEECTTSCEEEEETTTTEEEEECTT-SCEE-EEECSS---------------T-TCCEEEEEECST---------TCEE
T ss_pred eEEECCCCCEEEEecCCCeEEEECCC-CCeE-EecCCC---------------C-CCCCccceECCC---------CCEE
Confidence 44899999987777667889999987 6653 232110 0 112233333321 5566
Q ss_pred EEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEE-EecCCCCeeEEEEC
Q 007234 90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK-FRASTKGISCMAVS 168 (612)
Q Consensus 90 ~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~-~~~~~~~v~~l~~s 168 (612)
++...++.|..||.. ++............+.++++.++|+.+++...++.|..+|. +++.... .......+.+++++
T Consensus 119 v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d 196 (300)
T 2qc5_A 119 FTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSG 196 (300)
T ss_dssp EEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEEC
T ss_pred EEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEEC
Confidence 655557889999988 66543222334567899999999986666666788999998 5654432 12233468999999
Q ss_pred CCCCEEEEeC--CeEEEEEcCCCeeEEE-EecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecC
Q 007234 169 SDGKMLATAA--GQLKTFNCSDHKKMQK-FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEH 245 (612)
Q Consensus 169 pdg~~l~~~~--g~i~lwd~~~~~~~~~-~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~ 245 (612)
++|++.++.. +.|..||. +++.... +..+...+.++++.++|+.+++. ..++.|..|+.. +... .+....
T Consensus 197 ~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~-~~~~~i~~~~~~-g~~~----~~~~~~ 269 (300)
T 2qc5_A 197 NDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTE-WGANQIGRITND-NTIQ----EYQLQT 269 (300)
T ss_dssp TTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEE-TTTTEEEEECTT-SCEE----EEECCS
T ss_pred CCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEec-cCCCeEEEECCC-CcEE----EEECCc
Confidence 9998877765 68999998 5543332 33445678899999999866554 357889999983 3321 122222
Q ss_pred CceeEEeEEecCCccCCCCcEEEEEecCCcEEEEEC
Q 007234 246 PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (612)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~ 281 (612)
....+..+.+. ++|++.++.. . .|..+|.
T Consensus 270 ~~~~~~~i~~~-----~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 270 ENAEPHGITFG-----KDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp TTCCCCCEEEC-----TTSCEEEECS-S-EEEEEEE
T ss_pred cCCccceeEeC-----CCCCEEEEcc-C-ceEEeCC
Confidence 22233445555 7887655544 4 6776664
No 212
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.25 E-value=3e-09 Score=107.71 Aligned_cols=275 Identities=13% Similarity=0.020 Sum_probs=164.2
Q ss_pred CcEEEEEEC-----CCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEe----------cCCcEEEEECCCCc
Q 007234 86 SSLLVLGTG-----GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG----------ADGMVCEIDPLTGS 150 (612)
Q Consensus 86 ~~~l~~gs~-----~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s----------~dg~v~iwd~~~~~ 150 (612)
++.+++... ++.|.++|..+++.+.++..+.. + . +.++|||+++++++ .++.|.+||..+++
T Consensus 44 ~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~-P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~ 120 (386)
T 3sjl_D 44 ARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFL-P-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLL 120 (386)
T ss_dssp TTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSS-C-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC
T ss_pred CCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCC-C-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCe
Confidence 566777665 57899999999999988854433 3 4 99999999988876 36789999999999
Q ss_pred eeEEEecCC-------CCeeEEEECCCCCEEEEeC----CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEc
Q 007234 151 LLGKFRAST-------KGISCMAVSSDGKMLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV 219 (612)
Q Consensus 151 ~~~~~~~~~-------~~v~~l~~spdg~~l~~~~----g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~ 219 (612)
.+.++.... .....++++|||++++++. +.|.++|+.+++.+.++.-.. . ...+....+.+++.+
T Consensus 121 v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~-~~~~P~g~~~~~~~~- 196 (386)
T 3sjl_D 121 PTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-YHIFPTAPDTFFMHC- 196 (386)
T ss_dssp EEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E-EEEEEEETTEEEEEE-
T ss_pred EEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-ceeecCCCceeEEEC-
Confidence 998886432 2467899999999888763 689999999999999886322 1 223333345566665
Q ss_pred CCCeEEEEEcCC-CccccceeeEeec-CCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcc--eecccC---C
Q 007234 220 GERYIALWRTDG-VKKQSASCVLAME-HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE--ELRNTK---A 292 (612)
Q Consensus 220 ~d~~i~vwd~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~--~~~~~~---~ 292 (612)
.||.+.+.++.. ++... .....+. ..........|. .++|++++ .+.+|++++.|..+.. .+.... .
T Consensus 197 ~DG~~~~v~~~~~g~v~~-~~~~~~~~~~~~~~~~~~~~----~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~ 270 (386)
T 3sjl_D 197 RDGSLAKVAFGTEGTPEI-THTEVFHPEDEFLINHPAYS----QKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTE 270 (386)
T ss_dssp TTSCEEEEECCSSSCCEE-EECCCCSCTTSCBCSCCEEE----TTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCH
T ss_pred CCCCEEEEECCCCCeEEE-eecceeccccccccccceeE----cCCCcEEE-EeCCCEEEEEECCCCcceeecceecccc
Confidence 688888888876 43210 0000000 001111111221 26776555 6668999999986654 222111 0
Q ss_pred ----ceeEee--cccccCCCCcccchhhhcccc---cceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCc-
Q 007234 293 ----TKILSS--SEDVNSKSQKSATAAIFAAKL---QDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGV- 362 (612)
Q Consensus 293 ----~~~~~~--~~~~~s~~~~~~~~~i~~~~~---d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~- 362 (612)
...... ....+.++++ .+..... ++.-+....++++.+-.. +.+..++..-. .++.+++|+||+
T Consensus 271 ~~~~~g~~p~g~q~~a~~~~~~----~lyV~~~~~~~~~hk~~~~~V~viD~~t-~kv~~~i~vg~-~~~~lavs~D~~~ 344 (386)
T 3sjl_D 271 AERADGWRPGGWQQVAYHRALD----RIYLLVDQRDEWRHKTASRFVVVLDAKT-GERLAKFEMGH-EIDSINVSQDEKP 344 (386)
T ss_dssp HHHHTTEEECSSSCEEEETTTT----EEEEEEEECCTTCTTSCEEEEEEEETTT-CCEEEEEEEEE-EECEEEECSSSSC
T ss_pred ccccccccCCCcceeeECCCCC----eEEEEeccccccccCCCCCEEEEEECCC-CeEEEEEECCC-CcceEEECCCCCe
Confidence 000000 0001123333 2222211 111111123566666443 33344444332 678999999997
Q ss_pred eEeccccceeeecceee
Q 007234 363 LLPMSQSLLKSKRGRYV 379 (612)
Q Consensus 363 ~l~~s~s~d~~~~~w~~ 379 (612)
+|.++...++.+.+.+.
T Consensus 345 ~ly~tn~~~~~VsViD~ 361 (386)
T 3sjl_D 345 LLYALSTGDKTLYIHDA 361 (386)
T ss_dssp EEEEEETTTTEEEEEET
T ss_pred EEEEEcCCCCeEEEEEC
Confidence 56354555777777776
No 213
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.24 E-value=1.1e-09 Score=121.15 Aligned_cols=241 Identities=17% Similarity=0.194 Sum_probs=157.6
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEeecc-CCcc-ccccccccccccccccceeEEEeeecccccccccCCcEEEEEE
Q 007234 16 ALDYFAICSGDARIKIWDTLKGQVQTEFADI-ASTE-TTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGT 93 (612)
Q Consensus 16 dg~~las~s~dg~i~iwd~~~~~~~~~~~~~-~~~~-~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs 93 (612)
++..+++++.|+.|..+|..+|+.+..+... .... .....++ +. . +..+++++
T Consensus 120 ~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP-------------~v---~---------~g~v~vg~ 174 (689)
T 1yiq_A 120 WKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAP-------------RV---V---------NGKVVIGN 174 (689)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCC-------------EE---E---------TTEEEECC
T ss_pred ECCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCc-------------EE---E---------CCEEEEEe
Confidence 3567888888999999999999999887642 1000 0000000 00 0 34455554
Q ss_pred C------CCcEEEEEcCCCeEEEEeccCC------------------------------CCCeEEEEEecCCCEEEEEec
Q 007234 94 G------GGDVLALAVSAGQLKWRLSDCH------------------------------PGGVSAISFATHGSCIYSAGA 137 (612)
Q Consensus 94 ~------~g~I~vwd~~~~~~~~~~~~~h------------------------------~~~V~~l~~sp~~~~l~s~s~ 137 (612)
. +|.|..||..+|+.++++.... ......+++.|++..++.++.
T Consensus 175 ~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~ 254 (689)
T 1yiq_A 175 GGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVG 254 (689)
T ss_dssp BCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECC
T ss_pred CCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCC
Confidence 3 6789999999999998874211 011125788998889999887
Q ss_pred CCc-------------------EEEEECCCCceeEEEecCCC---------CeeEEEECCCCC---EEEEeC--CeEEEE
Q 007234 138 DGM-------------------VCEIDPLTGSLLGKFRASTK---------GISCMAVSSDGK---MLATAA--GQLKTF 184 (612)
Q Consensus 138 dg~-------------------v~iwd~~~~~~~~~~~~~~~---------~v~~l~~spdg~---~l~~~~--g~i~lw 184 (612)
++. |..||..+|+.+-.++.... ++.......+|+ .++.++ |.++++
T Consensus 255 ~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~l 334 (689)
T 1yiq_A 255 NGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVI 334 (689)
T ss_dssp CEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEE
T ss_pred CCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEE
Confidence 764 99999999999888765211 122222233565 677776 899999
Q ss_pred EcCCCeeEEEEecCC-CC--------------------------------------EEEEEEeeCCcEEEEEEcC-----
Q 007234 185 NCSDHKKMQKFSGHP-GA--------------------------------------VRFMTFSDNGKYVLSSAVG----- 220 (612)
Q Consensus 185 d~~~~~~~~~~~~h~-~~--------------------------------------v~~l~~sp~~~~l~s~s~~----- 220 (612)
|.++|+.+....-.. .. -..++|+|+...+++....
T Consensus 335 D~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~ 414 (689)
T 1yiq_A 335 DRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYY 414 (689)
T ss_dssp ETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEE
T ss_pred ECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceee
Confidence 999999874432111 00 1126788887777765311
Q ss_pred ---------------------------------------CCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccC
Q 007234 221 ---------------------------------------ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVD 261 (612)
Q Consensus 221 ---------------------------------------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (612)
++.|..||+.+++.. .....+...... .+.
T Consensus 415 ~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~-----W~~~~~~~~~~g-~~~----- 483 (689)
T 1yiq_A 415 EHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAA-----WEVPYVTIFNGG-TLS----- 483 (689)
T ss_dssp ECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEE-----EEEEESSSCCCC-EEE-----
T ss_pred eeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeE-----eEccCCCCccCc-cce-----
Confidence 377999999998754 333322222221 222
Q ss_pred CCCcEEEEEecCCcEEEEECCCcceecccCC
Q 007234 262 DAGLYVLAISETGVCYIWYGQNIEELRNTKA 292 (612)
Q Consensus 262 ~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~ 292 (612)
..+..++.++.||.++.||.++|+.+..++.
T Consensus 484 tagglvf~gt~dg~l~a~D~~tG~~lw~~~~ 514 (689)
T 1yiq_A 484 TAGNLVFEGSADGRVIAYAADTGEKLWEQPA 514 (689)
T ss_dssp ETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred ECCCEEEEECCCCcEEEEECCCCccceeeeC
Confidence 4567889999999999999999999876543
No 214
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.23 E-value=1.5e-09 Score=111.83 Aligned_cols=237 Identities=13% Similarity=0.123 Sum_probs=158.2
Q ss_pred EEEcCCCCEEEEEe----------CCCcEEEEECCCCcEEEEeecc-------CCccccccccccccccccccceeEEEe
Q 007234 11 TSFSPALDYFAICS----------GDARIKIWDTLKGQVQTEFADI-------ASTETTSLYGNRLEREHLSVDYTCMKW 73 (612)
Q Consensus 11 ~~fspdg~~las~s----------~dg~i~iwd~~~~~~~~~~~~~-------~~~~~~~~~s~~~~~~~~~~~~~~~~w 73 (612)
+++||||++++.+. .++.|.++|..+++.+.++... ......+.|+++
T Consensus 123 ia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spD--------------- 187 (426)
T 3c75_H 123 PVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPD--------------- 187 (426)
T ss_dssp EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTT---------------
T ss_pred eEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCC---------------
Confidence 39999999887765 3678999999999999887532 122344455554
Q ss_pred eecccccccccCCcEEEEEEC--CCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCC-CEEEEEecCCcEEEEECCCCc
Q 007234 74 LSVDRKKKRKLGSSLLVLGTG--GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHG-SCIYSAGADGMVCEIDPLTGS 150 (612)
Q Consensus 74 ~~~~~~~~~~~~~~~l~~gs~--~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~-~~l~s~s~dg~v~iwd~~~~~ 150 (612)
+++++++.. ++.|.+.|+.+++.+.++..+. . ....|++ ..+++.+.||.+.+.+..+++
T Consensus 188 ------------Gk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g---~--~~~~p~g~~~~v~~~~dG~~~~V~~~~~~ 250 (426)
T 3c75_H 188 ------------NKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD---C--YHIFPASPTVFYMNCRDGSLARVDFADGE 250 (426)
T ss_dssp ------------SSEEEEEECSSSCEEEEEETTTTEEEEEEECCS---E--EEEEEEETTEEEEEETTSSEEEEECCTTC
T ss_pred ------------CCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC---c--eeeccCCCcEEEEEcCCCCEEEEECCCCc
Confidence 778888874 5779999999999987775321 1 2344443 556777788888888886665
Q ss_pred eeEE----EecCCCC-eeEEEECCCCCEEEEeC--CeEEEEEcCCCeeE--EEEec----------CCCCEEEEEEeeCC
Q 007234 151 LLGK----FRASTKG-ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKM--QKFSG----------HPGAVRFMTFSDNG 211 (612)
Q Consensus 151 ~~~~----~~~~~~~-v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~--~~~~~----------h~~~v~~l~~sp~~ 211 (612)
.... +.....+ ...+.+.+++..++... +.+++.|....... ..+.- .......++++|++
T Consensus 251 v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg 330 (426)
T 3c75_H 251 TKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQS 330 (426)
T ss_dssp CEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGG
T ss_pred EEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCC
Confidence 5432 2111222 12456789888766555 89999998765421 11110 01111236899998
Q ss_pred cEEEEEEc---------CCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCc-EEEEEe-cCCcEEEEE
Q 007234 212 KYVLSSAV---------GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGL-YVLAIS-ETGVCYIWY 280 (612)
Q Consensus 212 ~~l~s~s~---------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~t~s-~dg~i~iwd 280 (612)
+.++.... .++.|.++|+.+.+.. ..+.-.. ....+.++ +||+ ++++.. .++.|.++|
T Consensus 331 ~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv-----~~I~vg~-~P~gia~s-----pDg~~~lyv~n~~s~~VsVID 399 (426)
T 3c75_H 331 DRIYLLVDQRDEWKHKAASRFVVVLNAETGERI-----NKIELGH-EIDSINVS-----QDAEPLLYALSAGTQTLHIYD 399 (426)
T ss_dssp TEEEEEEEECCTTCTTSCEEEEEEEETTTCCEE-----EEEEEEE-EECEEEEC-----CSSSCEEEEEETTTTEEEEEE
T ss_pred CEEEEEecccccccccCCCCEEEEEECCCCeEE-----EEEECCC-CcCeEEEc-----cCCCEEEEEEcCCCCeEEEEE
Confidence 87777642 1357999999998754 2222111 23455676 9998 888888 489999999
Q ss_pred CCCcceeccc
Q 007234 281 GQNIEELRNT 290 (612)
Q Consensus 281 ~~~~~~~~~~ 290 (612)
..+++.++.+
T Consensus 400 ~~t~kvv~tI 409 (426)
T 3c75_H 400 AATGEELRSV 409 (426)
T ss_dssp TTTCCEEEEE
T ss_pred CCCCCEEEEe
Confidence 9999988654
No 215
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.21 E-value=1.9e-08 Score=100.93 Aligned_cols=218 Identities=14% Similarity=0.100 Sum_probs=135.6
Q ss_pred EEEEcCCCC-EEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcE
Q 007234 10 LTSFSPALD-YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (612)
Q Consensus 10 ~~~fspdg~-~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (612)
..+|+|++. ++++...++.|..||..+++.. .+.. .....++.|.+. +.+
T Consensus 53 gp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~-------------------~~~v~~i~~~~d---------g~l 103 (326)
T 2ghs_A 53 GPTFDPASGTAWWFNILERELHELHLASGRKT-VHAL-------------------PFMGSALAKISD---------SKQ 103 (326)
T ss_dssp EEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEEC-------------------SSCEEEEEEEET---------TEE
T ss_pred CCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEEC-------------------CCcceEEEEeCC---------CeE
Confidence 458999855 4555556889999999887643 2321 113445555543 444
Q ss_pred EEEEECCCcEEEEEcCCCeEEEEecc--CC-CCCeEEEEEecCCCEEEEEec------CCcEEEEECCCCceeEEEecCC
Q 007234 89 LVLGTGGGDVLALAVSAGQLKWRLSD--CH-PGGVSAISFATHGSCIYSAGA------DGMVCEIDPLTGSLLGKFRAST 159 (612)
Q Consensus 89 l~~gs~~g~I~vwd~~~~~~~~~~~~--~h-~~~V~~l~~sp~~~~l~s~s~------dg~v~iwd~~~~~~~~~~~~~~ 159 (612)
++ ++.+ .|.+||..+++....... .. ...+.++.++|+|+++++... .+.|..+| +++.. .+....
T Consensus 104 ~v-~~~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~ 178 (326)
T 2ghs_A 104 LI-ASDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADI 178 (326)
T ss_dssp EE-EETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEE
T ss_pred EE-EECC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCC
Confidence 44 4544 499999988876422211 11 246899999999987665432 24566666 45443 332233
Q ss_pred CCeeEEEECCCCCEEEEeC---CeEEEEEcC--CC-e-----eEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEE
Q 007234 160 KGISCMAVSSDGKMLATAA---GQLKTFNCS--DH-K-----KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWR 228 (612)
Q Consensus 160 ~~v~~l~~spdg~~l~~~~---g~i~lwd~~--~~-~-----~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd 228 (612)
.....++|+|||+.++.+. +.|++||+. ++ + .+..+.........+++.++|.++++.. .++.|.+|+
T Consensus 179 ~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~-~~~~v~~~d 257 (326)
T 2ghs_A 179 SIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARW-GEGAVDRYD 257 (326)
T ss_dssp SSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEE-TTTEEEEEC
T ss_pred cccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEe-CCCEEEEEC
Confidence 4568999999998776553 799999986 55 3 2233333445678899999998776654 568899999
Q ss_pred cCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEec
Q 007234 229 TDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE 272 (612)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~ 272 (612)
.. ++.. ..+..+...+.+++|. .+++..|++++.
T Consensus 258 ~~-g~~~-----~~i~~~~~~~~~~af~----g~d~~~L~vt~~ 291 (326)
T 2ghs_A 258 TD-GNHI-----ARYEVPGKQTTCPAFI----GPDASRLLVTSA 291 (326)
T ss_dssp TT-CCEE-----EEEECSCSBEEEEEEE----STTSCEEEEEEB
T ss_pred CC-CCEE-----EEEECCCCCcEEEEEe----cCCCCEEEEEec
Confidence 83 4322 2233334345566664 156666655544
No 216
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.19 E-value=1.9e-09 Score=119.08 Aligned_cols=242 Identities=17% Similarity=0.237 Sum_probs=161.2
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEeecc-CCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEEC
Q 007234 16 ALDYFAICSGDARIKIWDTLKGQVQTEFADI-ASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG 94 (612)
Q Consensus 16 dg~~las~s~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~ 94 (612)
++..++.++.|+.|..+|..+|+.+..+... .........+.+ .+ . +..+++++.
T Consensus 127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p-----------~v----~---------~~~v~v~~~ 182 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAP-----------RV----F---------KGKVIIGNG 182 (677)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCC-----------EE----E---------TTEEEECCB
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCc-----------EE----E---------CCEEEEEec
Confidence 4567888888999999999999999888643 110000000000 00 0 445666654
Q ss_pred ------CCcEEEEEcCCCeEEEEeccCCCC-------------------------------CeEEEEEecCCCEEEEEec
Q 007234 95 ------GGDVLALAVSAGQLKWRLSDCHPG-------------------------------GVSAISFATHGSCIYSAGA 137 (612)
Q Consensus 95 ------~g~I~vwd~~~~~~~~~~~~~h~~-------------------------------~V~~l~~sp~~~~l~s~s~ 137 (612)
+|.|+.||..+|+.++++...... ....++++|++..++.++.
T Consensus 183 ~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~ 262 (677)
T 1kb0_A 183 GAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTG 262 (677)
T ss_dssp CTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECC
T ss_pred ccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECC
Confidence 688999999999999887432111 1135788998889888876
Q ss_pred CC-------------------cEEEEECCCCceeEEEecCC---------CCeeEEEECCCC---CEEEEeC--CeEEEE
Q 007234 138 DG-------------------MVCEIDPLTGSLLGKFRAST---------KGISCMAVSSDG---KMLATAA--GQLKTF 184 (612)
Q Consensus 138 dg-------------------~v~iwd~~~~~~~~~~~~~~---------~~v~~l~~spdg---~~l~~~~--g~i~lw 184 (612)
++ .|..+|..+|+.+-.++... .....+....+| +.++.++ |.++++
T Consensus 263 ~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~l 342 (677)
T 1kb0_A 263 NGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVL 342 (677)
T ss_dssp CEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEE
T ss_pred CCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEE
Confidence 64 59999999999988876422 122233333477 5677776 899999
Q ss_pred EcCCCeeEEEEecCCC-----------CE------------------------EEEEEeeCCcEEEEEEcC---------
Q 007234 185 NCSDHKKMQKFSGHPG-----------AV------------------------RFMTFSDNGKYVLSSAVG--------- 220 (612)
Q Consensus 185 d~~~~~~~~~~~~h~~-----------~v------------------------~~l~~sp~~~~l~s~s~~--------- 220 (612)
|.++|+.+..+.-... ++ ..++|+|++..+++....
T Consensus 343 D~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~ 422 (677)
T 1kb0_A 343 DRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDK 422 (677)
T ss_dssp ETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECT
T ss_pred ECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccc
Confidence 9999998876642211 11 146889988877765420
Q ss_pred ---------------------------------CCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEE
Q 007234 221 ---------------------------------ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYV 267 (612)
Q Consensus 221 ---------------------------------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 267 (612)
.+.|..||+.+++.. ....+........ +. .++..+
T Consensus 423 ~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~-----W~~~~~~~~~~g~-~~-----~~g~~v 491 (677)
T 1kb0_A 423 KWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAA-----WSVEHVSPWNGGT-LT-----TAGNVV 491 (677)
T ss_dssp TCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEE-----EEEEESSSCCCCE-EE-----ETTTEE
T ss_pred ccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEE-----eecCCCCCCcCcc-eE-----eCCCEE
Confidence 278999999998744 2332222222211 22 456788
Q ss_pred EEEecCCcEEEEECCCcceecccCC
Q 007234 268 LAISETGVCYIWYGQNIEELRNTKA 292 (612)
Q Consensus 268 ~t~s~dg~i~iwd~~~~~~~~~~~~ 292 (612)
+.++.||.+++||..+++.+..+..
T Consensus 492 ~~g~~dg~l~a~D~~tG~~lw~~~~ 516 (677)
T 1kb0_A 492 FQGTADGRLVAYHAATGEKLWEAPT 516 (677)
T ss_dssp EEECTTSEEEEEETTTCCEEEEEEC
T ss_pred EEECCCCcEEEEECCCCceeeeeeC
Confidence 8899999999999999999876553
No 217
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.16 E-value=1.8e-08 Score=104.44 Aligned_cols=187 Identities=12% Similarity=0.066 Sum_probs=124.8
Q ss_pred CcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCC--cEEEEECCCCceeEEE----ecCC
Q 007234 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADG--MVCEIDPLTGSLLGKF----RAST 159 (612)
Q Consensus 86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg--~v~iwd~~~~~~~~~~----~~~~ 159 (612)
+.++++...++.|++||+.++....... . ..... ++|+|+++.|++++.++ .|..||...+.....+ ....
T Consensus 142 g~lyv~d~~~~~I~~id~~~g~~~~~~~-~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~ 218 (409)
T 3hrp_A 142 NTVLAYQRDDPRVRLISVDDNKVTTVHP-G-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFS 218 (409)
T ss_dssp TEEEEEETTTTEEEEEETTTTEEEEEEE-T-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSC
T ss_pred CCEEEEecCCCcEEEEECCCCEEEEeec-c-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhc
Confidence 5666666667889999999887764432 2 23334 99999999999988766 7999998766554444 2134
Q ss_pred CCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEE----EecCCCCE--EEEEEeeCCcEEEEEEcCCCeEEEEEcCC
Q 007234 160 KGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQK----FSGHPGAV--RFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (612)
Q Consensus 160 ~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~----~~~h~~~v--~~l~~sp~~~~l~s~s~~d~~i~vwd~~~ 231 (612)
..+.+++++|++..|+++. +.|+.||..++..... ..++...- ..++|+|++..|+.+...++.|+.|+...
T Consensus 219 ~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g 298 (409)
T 3hrp_A 219 GKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDG 298 (409)
T ss_dssp SCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTC
T ss_pred CCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCC
Confidence 5678999999544444455 7899999987753222 22222222 38999996555555555788999998765
Q ss_pred CccccceeeEeecCC--------------ceeEEeEEecCCccCCCCcEEEEEe-cCCcEEEEECCCcce
Q 007234 232 VKKQSASCVLAMEHP--------------AVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQNIEE 286 (612)
Q Consensus 232 ~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~l~t~s-~dg~i~iwd~~~~~~ 286 (612)
.. . .. ..+. -.....++++ ++|++.++-+ .++.|+.|+..++..
T Consensus 299 ~~-~----~~-~g~~~~~g~~dg~~~~~~~~~P~gia~d-----~dG~lyvad~~~~~~I~~~~~~~G~v 357 (409)
T 3hrp_A 299 EC-E----WF-CGSATQKTVQDGLREEALFAQPNGMTVD-----EDGNFYIVDGFKGYCLRKLDILDGYV 357 (409)
T ss_dssp CE-E----EE-EECTTCCSCBCEEGGGCBCSSEEEEEEC-----TTCCEEEEETTTTCEEEEEETTTTEE
T ss_pred CE-E----EE-EeCCCCCCcCCCcccccEeCCCeEEEEe-----CCCCEEEEeCCCCCEEEEEECCCCEE
Confidence 31 1 11 1111 1224566676 8999777777 788999999776653
No 218
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.15 E-value=2e-09 Score=110.91 Aligned_cols=234 Identities=7% Similarity=-0.063 Sum_probs=144.7
Q ss_pred CCCCEEEEEeC-C----CcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEE
Q 007234 15 PALDYFAICSG-D----ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (612)
Q Consensus 15 pdg~~las~s~-d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (612)
|+++++..+.. + +.|.++|..+++.+.++.....+ .+.++++ ++.+
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpD---------------------------gk~l 132 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAED---------------------------GSFF 132 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTT---------------------------SSCE
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCC---------------------------CCEE
Confidence 57776665544 3 69999999999999988754333 4555555 6666
Q ss_pred EEEE----------CCCcEEEEEcCCCeEEEEeccC------CCCCeEEEEEecCCCEEEEEec--CCcEEEEECCCCce
Q 007234 90 VLGT----------GGGDVLALAVSAGQLKWRLSDC------HPGGVSAISFATHGSCIYSAGA--DGMVCEIDPLTGSL 151 (612)
Q Consensus 90 ~~gs----------~~g~I~vwd~~~~~~~~~~~~~------h~~~V~~l~~sp~~~~l~s~s~--dg~v~iwd~~~~~~ 151 (612)
+++. .++.|.++|..+++.+.++.-+ .......+.|+|||++++++.. ++.|.+.|+.+++.
T Consensus 133 yVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kv 212 (426)
T 3c75_H 133 AQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTF 212 (426)
T ss_dssp EEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEE
T ss_pred EEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeE
Confidence 6665 4677999999999988776422 1234568899999999999874 57899999999999
Q ss_pred eEEEecCCCCeeEEEECCCC-CEEEE-eC-CeEEEEEcCCCeeEEE----EecCCCCE-EEEEEeeCCcEEEEEEcCCCe
Q 007234 152 LGKFRASTKGISCMAVSSDG-KMLAT-AA-GQLKTFNCSDHKKMQK----FSGHPGAV-RFMTFSDNGKYVLSSAVGERY 223 (612)
Q Consensus 152 ~~~~~~~~~~v~~l~~spdg-~~l~~-~~-g~i~lwd~~~~~~~~~----~~~h~~~v-~~l~~sp~~~~l~s~s~~d~~ 223 (612)
+.++..... ....|++ +.+++ .. |.+.+.+..+++.... +.-...++ ..+.|.+++..++..+ ..+.
T Consensus 213 v~~I~v~g~----~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s-~~g~ 287 (426)
T 3c75_H 213 DRMLDVPDC----YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPT-YTGK 287 (426)
T ss_dssp EEEEECCSE----EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEB-TTSE
T ss_pred EEEEEcCCc----eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEe-CCCc
Confidence 988875321 2233333 22222 22 6666666655554422 11111221 1356788888777776 5789
Q ss_pred EEEEEcCCCccccceeeEeec--C---CceeE---EeEEecCCccCCCCcEEEEEec----------CCcEEEEECCCcc
Q 007234 224 IALWRTDGVKKQSASCVLAME--H---PAVFM---DCRCIDNGGVDDAGLYVLAISE----------TGVCYIWYGQNIE 285 (612)
Q Consensus 224 i~vwd~~~~~~~~~~~~~~~~--~---~~~~~---~~~~~~~~~~~~~~~~l~t~s~----------dg~i~iwd~~~~~ 285 (612)
+.+.|......... ..+... . ..... ..+.++ ++++++++... ++.|.++|..+.+
T Consensus 288 V~ViD~~~~~~~v~-~~~~~~~~~~i~~g~~p~g~~~va~s-----~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~k 361 (426)
T 3c75_H 288 IFQADLTAEGATFR-APIEALTEAERADDWRPGGWQQTAYH-----RQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGE 361 (426)
T ss_dssp EEEEEECSSCEEEC-CCEESSCTTTGGGTEEECSSSCEEEE-----GGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCC
T ss_pred EEEEeccCCceEEe-eeeeeccccccccccccCCceeeEEc-----CCCCEEEEEecccccccccCCCCEEEEEECCCCe
Confidence 99999866532100 000100 0 00000 013444 77777666542 3468888877776
Q ss_pred eec
Q 007234 286 ELR 288 (612)
Q Consensus 286 ~~~ 288 (612)
.+.
T Consensus 362 vv~ 364 (426)
T 3c75_H 362 RIN 364 (426)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
No 219
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.14 E-value=9.6e-09 Score=113.75 Aligned_cols=199 Identities=12% Similarity=0.156 Sum_probs=128.3
Q ss_pred CCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEECCC
Q 007234 17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGG 96 (612)
Q Consensus 17 g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g 96 (612)
+..+++++.++.|..+|..+|+.+..+.............. ....... ..+ +..+++++.+|
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~----~~~~~~~--~~~------------~g~v~v~~~dg 131 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACC----DAVNRGV--AVW------------KGKVYVGVLDG 131 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTT----CSCCCCC--EEE------------TTEEEEECTTS
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccc----cCCCCcc--EEE------------CCEEEEEccCC
Confidence 45677777889999999999999998864332111000000 0000000 001 56789999999
Q ss_pred cEEEEEcCCCeEEEEeccC-CCCCeEEEEEec---CCCEEEEEe------cCCcEEEEECCCCceeEEEecCC-------
Q 007234 97 DVLALAVSAGQLKWRLSDC-HPGGVSAISFAT---HGSCIYSAG------ADGMVCEIDPLTGSLLGKFRAST------- 159 (612)
Q Consensus 97 ~I~vwd~~~~~~~~~~~~~-h~~~V~~l~~sp---~~~~l~s~s------~dg~v~iwd~~~~~~~~~~~~~~------- 159 (612)
.|..+|..+|+.++++... +......+..+| ++ .++.++ .+|.|+.||..+|+.+-.+....
T Consensus 132 ~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~ 210 (689)
T 1yiq_A 132 RLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPP 210 (689)
T ss_dssp EEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCC
T ss_pred EEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCccccc
Confidence 9999999999999887543 211111111112 44 445443 37899999999999987775311
Q ss_pred ------------------------CCeeEEEECCCCCEEEEeC--C-------------------eEEEEEcCCCeeEEE
Q 007234 160 ------------------------KGISCMAVSSDGKMLATAA--G-------------------QLKTFNCSDHKKMQK 194 (612)
Q Consensus 160 ------------------------~~v~~l~~spdg~~l~~~~--g-------------------~i~lwd~~~~~~~~~ 194 (612)
.....++++|++.+++.+. + .|..+|.++|+.+..
T Consensus 211 ~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~ 290 (689)
T 1yiq_A 211 EGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWH 290 (689)
T ss_dssp CSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEE
T ss_pred ccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEe
Confidence 0112578899888888876 3 399999999999887
Q ss_pred Eec--CC-------CCEEEEEEeeCCc---EEEEEEcCCCeEEEEEcCCCccc
Q 007234 195 FSG--HP-------GAVRFMTFSDNGK---YVLSSAVGERYIALWRTDGVKKQ 235 (612)
Q Consensus 195 ~~~--h~-------~~v~~l~~sp~~~---~l~s~s~~d~~i~vwd~~~~~~~ 235 (612)
++. |. .++.......+|+ .++.++ .+|.++++|..+++..
T Consensus 291 ~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~-~~G~l~~lD~~tG~~l 342 (689)
T 1yiq_A 291 YQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAP-KNGFFYVIDRATGELL 342 (689)
T ss_dssp EESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECC-TTSEEEEEETTTCCEE
T ss_pred eecCCcccccccCCCCcEEEeeccCCcEEEEEEEEC-CCCeEEEEECCCCCEe
Confidence 764 21 2222223334665 566665 7999999999998754
No 220
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.14 E-value=8.6e-09 Score=104.97 Aligned_cols=232 Identities=11% Similarity=-0.006 Sum_probs=146.0
Q ss_pred EEc--CCCCEEEEEe-CCCcEEEEECCCC----cEEEEeeccCCccccccccccccccccccceeEEEeeeccccccccc
Q 007234 12 SFS--PALDYFAICS-GDARIKIWDTLKG----QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (612)
Q Consensus 12 ~fs--pdg~~las~s-~dg~i~iwd~~~~----~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (612)
.++ +++++|...+ .+++|.|+|+.+. +...++... .+. . ..+. + ....+...+ +
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~--~~~----~---~~g~-s-~Ph~~~~~p-d------- 148 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPE--EVK----K---VSGY-S-RLHTVHCGP-D------- 148 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHH--HHH----H---HHCE-E-EEEEEEECS-S-------
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechh--hcc----c---ccCC-C-cccceeECC-C-------
Confidence 457 8888877655 5889999999766 555555200 000 0 0000 0 000111111 1
Q ss_pred CCcEEEEEECC------CcEEEEEcCCCeEEEEeccC-CC-CCeEEEEEecCCCEEEEEe-------------------c
Q 007234 85 GSSLLVLGTGG------GDVLALAVSAGQLKWRLSDC-HP-GGVSAISFATHGSCIYSAG-------------------A 137 (612)
Q Consensus 85 ~~~~l~~gs~~------g~I~vwd~~~~~~~~~~~~~-h~-~~V~~l~~sp~~~~l~s~s-------------------~ 137 (612)
+ +++++..+ |.|.++|..+++.+.++..+ .. .--..+.|+|+++.+++.. .
T Consensus 149 -G-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~ 226 (462)
T 2ece_A 149 -A-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRY 226 (462)
T ss_dssp -C-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHS
T ss_pred -e-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhcc
Confidence 4 55555554 67999999999999887533 22 2234688999999888884 3
Q ss_pred CCcEEEEECCCCceeEEEecCC--CCeeEEEE--CCCCCEEEEeC--------CeEEEEEcCCCee--EEEE--ecC---
Q 007234 138 DGMVCEIDPLTGSLLGKFRAST--KGISCMAV--SSDGKMLATAA--------GQLKTFNCSDHKK--MQKF--SGH--- 198 (612)
Q Consensus 138 dg~v~iwd~~~~~~~~~~~~~~--~~v~~l~~--spdg~~l~~~~--------g~i~lwd~~~~~~--~~~~--~~h--- 198 (612)
+.+|.+||+.+++.+.++.... .....+.| +|++++++++. ++|.+|..+.++. .+.+ ...
T Consensus 227 ~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~ 306 (462)
T 2ece_A 227 GNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLE 306 (462)
T ss_dssp CCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECC
T ss_pred CCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCcccc
Confidence 6899999999998888887642 24456666 99999877643 5887776655432 1111 110
Q ss_pred -------------CCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCc----------e----eEE
Q 007234 199 -------------PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPA----------V----FMD 251 (612)
Q Consensus 199 -------------~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~----------~----~~~ 251 (612)
......|.++|||++|+++....+.|.+||+....... .+....-.. . ...
T Consensus 307 ~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~--lv~~I~tGG~~~~~~~~~G~~~~ggPr 384 (462)
T 2ece_A 307 GNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPV--LTGKVKLGGIFHRADHPAGHKLTGAPQ 384 (462)
T ss_dssp SSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCE--EEEEEECBTTTTCBCCTTSCCCCSCCC
T ss_pred ccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcE--EEEEEEeCCeeccccccccccCCCCCC
Confidence 23467899999999999988778899999986432111 111111110 0 134
Q ss_pred eEEecCCccCCCCcEEEEEe
Q 007234 252 CRCIDNGGVDDAGLYVLAIS 271 (612)
Q Consensus 252 ~~~~~~~~~~~~~~~l~t~s 271 (612)
.+.++ |||++|+++.
T Consensus 385 ~~~lS-----pDGk~LyVaN 399 (462)
T 2ece_A 385 MLEIS-----RDGRRVYVTN 399 (462)
T ss_dssp CEEEC-----TTSSEEEEEC
T ss_pred EEEEc-----CCCCEEEEEc
Confidence 55666 9999999998
No 221
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.13 E-value=3.3e-11 Score=123.38 Aligned_cols=223 Identities=9% Similarity=0.027 Sum_probs=119.2
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEECC
Q 007234 16 ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGG 95 (612)
Q Consensus 16 dg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~ 95 (612)
++..+++++.||.|..||..+|+.+..+.. +.+.+..+..+ +..+++++.+
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~---------------------------g~~~v~~s~d 58 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVE---------------------------EPAFLPDPND 58 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC--------------------------------CCEEECTTT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcC---------------------------CCEEEEeCCC
Confidence 578899999999999999999999988864 22221111111 4567777899
Q ss_pred CcEEEEEcCCCeEEEEeccCCCCCeE-EEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEEEECCCCCEE
Q 007234 96 GDVLALAVSAGQLKWRLSDCHPGGVS-AISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKML 174 (612)
Q Consensus 96 g~I~vwd~~~~~~~~~~~~~h~~~V~-~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l 174 (612)
|.|+.||..+|+.++.........+. +..+. ++..+++++.|+.|+.||..+|+.+..+..+. ...++|++..+
T Consensus 59 g~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v 133 (369)
T 2hz6_A 59 GSLYTLGSKNNEGLTKLPFTIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLL 133 (369)
T ss_dssp CCEEEC-----CCSEECSCCHHHHHTTCSCC------CCCCEEEEEEEEECCC--------------------------E
T ss_pred CEEEEEECCCCceeeeeeccCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEE
Confidence 99999999999887665321111110 11111 34567888899999999999999887776543 23456777788
Q ss_pred EEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCC---cEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCcee
Q 007234 175 ATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNG---KYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVF 249 (612)
Q Consensus 175 ~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~---~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 249 (612)
++++ +.|+.||.++++.+.++..+. .....+.++. ..+++++ .|+.+..||..+++.. .........
T Consensus 134 ~~~~~dg~v~a~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~-~dg~v~a~d~~tG~~~-----W~~~~~~pv 205 (369)
T 2hz6_A 134 YLGRTEYTITMYDTKTRELRWNATYFD--YAASLPEDDVDYKMSHFVSN-GDGLVVTVDSESGDVL-----WIQNYASPV 205 (369)
T ss_dssp EEEEEEEEEECCCSSSSSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEE-TSCEEEEECTTTCCEE-----EEEECSSCE
T ss_pred EEEecCCEEEEEECCCCCEEEeEeccc--ccCccccCCccccceEEEEC-CCCEEEEEECCCCcEE-----EEecCCCce
Confidence 7776 899999999998766654221 1223333331 3455565 6999999999988743 333333333
Q ss_pred EEeEEecCCccCCCCcEEEE--EecCCcEEEEECCCcc
Q 007234 250 MDCRCIDNGGVDDAGLYVLA--ISETGVCYIWYGQNIE 285 (612)
Q Consensus 250 ~~~~~~~~~~~~~~~~~l~t--~s~dg~i~iwd~~~~~ 285 (612)
.....++ ++|...+. ...++.++.+|..+|+
T Consensus 206 ~~~~~~~-----~dg~~~v~~~~~~~~~l~~ld~~tG~ 238 (369)
T 2hz6_A 206 VAFYVWQ-----REGLRKVMHINVAVETLRYLTFMSGE 238 (369)
T ss_dssp EEEEECT-----TSSCEEECCEEEEHHHHHHHHHHHHH
T ss_pred EEEEEec-----CCceEeccceeecccceeeeehhcCC
Confidence 3433443 55543211 0114456666666665
No 222
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.09 E-value=3e-09 Score=107.65 Aligned_cols=239 Identities=8% Similarity=0.057 Sum_probs=142.4
Q ss_pred EEEEcCCCCEEEEEeC--CCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCc
Q 007234 10 LTSFSPALDYFAICSG--DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (612)
Q Consensus 10 ~~~fspdg~~las~s~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (612)
.++++|+|+++++... ++.++||.+.+++. ..|..... . .++++ .....+.+.+. +.
T Consensus 21 ~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~---------~-~~~~~-~~p~gv~~d~~---------g~ 79 (343)
T 2qe8_A 21 NITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSG---------N-AIITF-DTVLGIKSDGN---------GI 79 (343)
T ss_dssp EEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCS---------S-CCCCC-SCEEEEEECSS---------SE
T ss_pred eEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCccc---------C-cccce-eEeeEEEEcCC---------Cc
Confidence 3499999999888642 34355665545543 23321110 0 01111 12334444332 45
Q ss_pred EEEEEEC-----CCcEEEEEcCCCeEEEEecc-----CCCCCeEEEEEecCCCEE-EEEe---cCCcEEEEECCCCceeE
Q 007234 88 LLVLGTG-----GGDVLALAVSAGQLKWRLSD-----CHPGGVSAISFATHGSCI-YSAG---ADGMVCEIDPLTGSLLG 153 (612)
Q Consensus 88 ~l~~gs~-----~g~I~vwd~~~~~~~~~~~~-----~h~~~V~~l~~sp~~~~l-~s~s---~dg~v~iwd~~~~~~~~ 153 (612)
+.++-+. ++.|.+||+.+++.+..+.. .+...+.++++++++..+ ++.. .++.|.+||+.+++..+
T Consensus 80 L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r 159 (343)
T 2qe8_A 80 VWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAAR 159 (343)
T ss_dssp EEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEE
T ss_pred EEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEE
Confidence 4554433 57899999999987655431 123457899999865555 4444 57899999998887666
Q ss_pred EEecCC-----------------------------CCeeEEEECCCCCEEEEeC---CeEEEEEcC---CCe-----eEE
Q 007234 154 KFRAST-----------------------------KGISCMAVSSDGKMLATAA---GQLKTFNCS---DHK-----KMQ 193 (612)
Q Consensus 154 ~~~~~~-----------------------------~~v~~l~~spdg~~l~~~~---g~i~lwd~~---~~~-----~~~ 193 (612)
.+..|. ..+..|+|+|||+.|+++. +.++.++.. .+. ...
T Consensus 160 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 239 (343)
T 2qe8_A 160 VLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGS 239 (343)
T ss_dssp ECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHT
T ss_pred EecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhc
Confidence 553311 2368899999999888776 466666542 110 000
Q ss_pred --EEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEe
Q 007234 194 --KFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS 271 (612)
Q Consensus 194 --~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s 271 (612)
...++.+....++++++|..+++.. .++.|.+||..+++.. .+.... .......+++. +++.++++.+
T Consensus 240 ~~~~~g~~g~pdgia~d~~G~l~va~~-~~~~V~~~d~~~G~~~---~~~~~~-~~~~p~~va~~-----~~g~l~v~~~ 309 (343)
T 2qe8_A 240 KIERYSEKPICDGISIDKDHNIYVGDL-AHSAIGVITSADRAYK---LLVTDE-KLSWTDSFNFG-----SDGYLYFDCN 309 (343)
T ss_dssp TCEEEEECCSCSCEEECTTCCEEEEEG-GGTEEEEEETTTTEEE---EEEECG-GGSCEEEEEEC-----TTSCEEEEEC
T ss_pred ceEecccCCCCceEEECCCCCEEEEcc-CCCeEEEEECCCCCEE---EEEECC-ceecCCeeEEC-----CCCcEEEEeC
Confidence 1224444566789999998777654 6889999998455422 122211 13345667776 7787777776
Q ss_pred cCCcEEEE
Q 007234 272 ETGVCYIW 279 (612)
Q Consensus 272 ~dg~i~iw 279 (612)
..+.+.+|
T Consensus 310 ~~~~~~~f 317 (343)
T 2qe8_A 310 QLHHSAPL 317 (343)
T ss_dssp CGGGSGGG
T ss_pred cccccccc
Confidence 65554444
No 223
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.09 E-value=2.1e-08 Score=96.12 Aligned_cols=190 Identities=12% Similarity=0.040 Sum_probs=135.2
Q ss_pred EEcCCCCEEEEEeC--CCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEE
Q 007234 12 SFSPALDYFAICSG--DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (612)
Q Consensus 12 ~fspdg~~las~s~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (612)
+|+|||.++++.+. ++.|+++|+.+++.+..+..... .....+.+. . +.+.
T Consensus 27 ~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~-----------------~fgeGi~~~--g--------~~ly 79 (266)
T 2iwa_A 27 VYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDS-----------------YFGEGLTLL--N--------EKLY 79 (266)
T ss_dssp EECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTT-----------------CCEEEEEEE--T--------TEEE
T ss_pred EEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCC-----------------cceEEEEEe--C--------CEEE
Confidence 99999866665553 57999999999999988752110 001112221 0 3344
Q ss_pred EEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCC-----CCeeE
Q 007234 90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST-----KGISC 164 (612)
Q Consensus 90 ~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~-----~~v~~ 164 (612)
++.-.++.+.++|..+.+.+.++..+ ... ...+++||+.++++..++.|.++|..+.+.+..+.... ..+..
T Consensus 80 v~t~~~~~v~viD~~t~~v~~~i~~g-~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~ne 156 (266)
T 2iwa_A 80 QVVWLKNIGFIYDRRTLSNIKNFTHQ-MKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNE 156 (266)
T ss_dssp EEETTCSEEEEEETTTTEEEEEEECC-SSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEE
T ss_pred EEEecCCEEEEEECCCCcEEEEEECC-CCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCccccccee
Confidence 44556678999999999998887543 121 34466788888888788999999999999888876432 13667
Q ss_pred EEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecC-------------CCCEEEEEEeeCCcEEEEEEcCCCeEEEEEc
Q 007234 165 MAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGH-------------PGAVRFMTFSDNGKYVLSSAVGERYIALWRT 229 (612)
Q Consensus 165 l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h-------------~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~ 229 (612)
+.|. +|+..+... +.|.+.|..+++.+..+.-. ....+.|+|+|+++.++.++.....+.+.++
T Consensus 157 le~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l 235 (266)
T 2iwa_A 157 LEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKL 235 (266)
T ss_dssp EEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEE
T ss_pred EEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEE
Confidence 8888 776555543 89999999999998888631 1346899999999877777766788888887
Q ss_pred CCC
Q 007234 230 DGV 232 (612)
Q Consensus 230 ~~~ 232 (612)
...
T Consensus 236 ~~~ 238 (266)
T 2iwa_A 236 HLV 238 (266)
T ss_dssp EEC
T ss_pred ecc
Confidence 654
No 224
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.08 E-value=9.2e-09 Score=102.16 Aligned_cols=220 Identities=15% Similarity=0.117 Sum_probs=134.5
Q ss_pred EEEcCCCC-EEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEE
Q 007234 11 TSFSPALD-YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (612)
Q Consensus 11 ~~fspdg~-~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (612)
.+|+|+|+ ++++...++.|..|+. +++. ..+......+ ..+.|.+. ++++
T Consensus 50 p~~~~~g~~l~~~d~~~~~i~~~~~-~g~~-~~~~~~~~~~------------------~gl~~d~d---------G~l~ 100 (305)
T 3dr2_A 50 PAWWEAQRTLVWSDLVGRRVLGWRE-DGTV-DVLLDATAFT------------------NGNAVDAQ---------QRLV 100 (305)
T ss_dssp EEEEGGGTEEEEEETTTTEEEEEET-TSCE-EEEEESCSCE------------------EEEEECTT---------SCEE
T ss_pred CeEeCCCCEEEEEECCCCEEEEEeC-CCCE-EEEeCCCCcc------------------ceeeECCC---------CCEE
Confidence 48999999 5556666889999998 4553 3343222222 23333322 6655
Q ss_pred EEEECCCcEEEEEcCCCeEEEEec--cC-CCCCeEEEEEecCCCEEEE----Eec-------------CCcEEEEECCCC
Q 007234 90 VLGTGGGDVLALAVSAGQLKWRLS--DC-HPGGVSAISFATHGSCIYS----AGA-------------DGMVCEIDPLTG 149 (612)
Q Consensus 90 ~~gs~~g~I~vwd~~~~~~~~~~~--~~-h~~~V~~l~~sp~~~~l~s----~s~-------------dg~v~iwd~~~~ 149 (612)
++...++.|.+|+.. ++...... .+ ....+.++++.|+|+.+++ |.. .+.|..||..++
T Consensus 101 v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g 179 (305)
T 3dr2_A 101 HCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGS 179 (305)
T ss_dssp EEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSC
T ss_pred EEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCC
Confidence 444455779999986 55432111 11 1234678999999997776 322 256888888777
Q ss_pred ceeEEEecCCCCeeEEEECCCCCEEEEeC--------CeEEEEEcCCCee--EEEE-ecCCCCEEEEEEeeCCcEEEEEE
Q 007234 150 SLLGKFRASTKGISCMAVSSDGKMLATAA--------GQLKTFNCSDHKK--MQKF-SGHPGAVRFMTFSDNGKYVLSSA 218 (612)
Q Consensus 150 ~~~~~~~~~~~~v~~l~~spdg~~l~~~~--------g~i~lwd~~~~~~--~~~~-~~h~~~v~~l~~sp~~~~l~s~s 218 (612)
+..... .......++|+||++.|+++. +.|++|++..+.. ...+ ....+....+++.++|++.+ ++
T Consensus 180 ~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv-~~ 256 (305)
T 3dr2_A 180 PLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWS-SS 256 (305)
T ss_dssp CCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEE-CC
T ss_pred cEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEE-ec
Confidence 654433 334568899999999777654 3799999876541 1112 11233456788999998544 33
Q ss_pred cCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEE
Q 007234 219 VGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCY 277 (612)
Q Consensus 219 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~ 277 (612)
.+ .|.+|+... +.. ..+..+. ....++|. ++++.|+.++.++..+
T Consensus 257 -~~-gv~~~~~~g-~~~-----~~~~~~~-~~~~~~f~-----~d~~~L~it~~~~l~~ 301 (305)
T 3dr2_A 257 -GT-GVCVFDSDG-QLL-----GHIPTPG-TASNCTFD-----QAQQRLFITGGPCLWM 301 (305)
T ss_dssp -SS-EEEEECTTS-CEE-----EEEECSS-CCCEEEEC-----TTSCEEEEEETTEEEE
T ss_pred -CC-cEEEECCCC-CEE-----EEEECCC-ceeEEEEe-----CCCCEEEEEcCCeEEE
Confidence 34 489999743 322 2222233 24556676 7888888887765433
No 225
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.07 E-value=2.7e-08 Score=104.85 Aligned_cols=240 Identities=9% Similarity=0.032 Sum_probs=158.6
Q ss_pred CCCCEEEEEeC-CCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeee-cccccccccCCcEEEEE
Q 007234 15 PALDYFAICSG-DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLS-VDRKKKRKLGSSLLVLG 92 (612)
Q Consensus 15 pdg~~las~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~-~~~~~~~~~~~~~l~~g 92 (612)
|||+++..+.. +++|.+.|+.+.++...+.-..+ .....+.... ++ +.+++++
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g-----------------~~phg~~~~~~p~--------~~~v~~~ 153 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNA-----------------KGIHGLRPQKWPR--------SNYVFCN 153 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSC-----------------CSEEEEEECCSSB--------CSEEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCC-----------------CCCcceeeeecCC--------CcEEEEe
Confidence 38888887766 56799999999998885542111 1111222211 11 5666666
Q ss_pred E------------------CCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCC---------------
Q 007234 93 T------------------GGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADG--------------- 139 (612)
Q Consensus 93 s------------------~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg--------------- 139 (612)
+ .++.+.++|..+.+..+++.-+- ....++++|+|+++++++.+.
T Consensus 154 ~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg--~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d 231 (595)
T 1fwx_A 154 GEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG--NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMD 231 (595)
T ss_dssp ECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS--CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEE
T ss_pred cccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCC--CccceEECCCCCEEEEEecCcccCcchhhccccccc
Confidence 4 23459999999999988886432 456788999999988887543
Q ss_pred -----------------------cEEEEECCC--Cce-eEEEecCCCCeeEEEECCCCCEEEEeC---CeEEEEEcCCCe
Q 007234 140 -----------------------MVCEIDPLT--GSL-LGKFRASTKGISCMAVSSDGKMLATAA---GQLKTFNCSDHK 190 (612)
Q Consensus 140 -----------------------~v~iwd~~~--~~~-~~~~~~~~~~v~~l~~spdg~~l~~~~---g~i~lwd~~~~~ 190 (612)
.|.+.|..+ ++. +..+... ....++.++|||+++++++ ++|.++|+.+.+
T Consensus 232 ~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg-~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~ 310 (595)
T 1fwx_A 232 HIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFD 310 (595)
T ss_dssp EEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHH
T ss_pred eEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecC-CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccc
Confidence 477888877 544 5555543 3568899999999999887 799999998653
Q ss_pred ------------eEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCc------cccceeeEeecCCceeEEe
Q 007234 191 ------------KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK------KQSASCVLAMEHPAVFMDC 252 (612)
Q Consensus 191 ------------~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~------~~~~~~~~~~~~~~~~~~~ 252 (612)
.+.++.- ......++|+|+| +++++..-|+.|.+||+.+.. .. ...+..+..+...-..
T Consensus 311 ~~~~~~l~~~~~v~~~v~v-G~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~-~~vi~kidV~yqpGh~ 387 (595)
T 1fwx_A 311 AVFYENADPRSAVVAEPEL-GLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKV-DPIKDKLDVHYQPGHL 387 (595)
T ss_dssp HHHHSCCCGGGGEEECCBC-CSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSC-CCEEEEEECSSCEEEE
T ss_pred cccccccCcccceEEEcCC-CCCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhccccc-ceeEEEeecccccccc
Confidence 3344432 2446889999999 777777789999999987621 10 1123333333222111
Q ss_pred EEecCCccCCCCcEEEEEec-C-CcE-----------EEEECCCcc
Q 007234 253 RCIDNGGVDDAGLYVLAISE-T-GVC-----------YIWYGQNIE 285 (612)
Q Consensus 253 ~~~~~~~~~~~~~~l~t~s~-d-g~i-----------~iwd~~~~~ 285 (612)
.......+++||++|++.+. . .++ .++|+..++
T Consensus 388 ~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 388 KTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp EETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred eeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence 22222334599999999865 1 233 889985544
No 226
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.03 E-value=9.9e-08 Score=97.62 Aligned_cols=235 Identities=9% Similarity=0.024 Sum_probs=145.2
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEECC
Q 007234 16 ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGG 95 (612)
Q Consensus 16 dg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~ 95 (612)
++..+..++.++.|..+|..+|+.+..+........ ... ......+.. .. . +..+++++.+
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~----~~~-----~~~~~~~~~-~~-~--------~~~v~v~~~~ 112 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGW----FSK-----EPALLSGGV-TV-S--------GGHVYIGSEK 112 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---C----CSC-----CCCCEEEEE-EE-E--------TTEEEEEETT
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCcccccc----ccc-----cCcccccCc-eE-e--------CCEEEEEcCC
Confidence 356777888899999999999999877653221000 000 000000000 00 1 5678899999
Q ss_pred CcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCe-----eEEEECCC
Q 007234 96 GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI-----SCMAVSSD 170 (612)
Q Consensus 96 g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v-----~~l~~spd 170 (612)
|.|..+|..+|+.+++.... .......... +..++.++.++.|..+|..+|+.+..+....... ...... +
T Consensus 113 g~l~a~d~~tG~~~W~~~~~-~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~ 188 (376)
T 3q7m_A 113 AQVYALNTSDGTVAWQTKVA-GEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA-F 188 (376)
T ss_dssp SEEEEEETTTCCEEEEEECS-SCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE-T
T ss_pred CEEEEEECCCCCEEEEEeCC-CceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE-C
Confidence 99999999999998876432 1111122222 4478888899999999999999887776432211 222222 3
Q ss_pred CCEEEEeC--CeEEEEEcCCCeeEEEEecCCCC----------E-EEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccc
Q 007234 171 GKMLATAA--GQLKTFNCSDHKKMQKFSGHPGA----------V-RFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA 237 (612)
Q Consensus 171 g~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~----------v-~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~ 237 (612)
+ .++++. +.+..+|.++++.+.+....... + ....+ .+..++.++ .++.+..+|..+++..
T Consensus 189 ~-~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~v~~~~-~~g~l~~~d~~tG~~~-- 262 (376)
T 3q7m_A 189 G-AAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV--VNGVVFALA-YNGNLTALDLRSGQIM-- 262 (376)
T ss_dssp T-EEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE--ETTEEEEEC-TTSCEEEEETTTCCEE--
T ss_pred C-EEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE--ECCEEEEEe-cCcEEEEEECCCCcEE--
Confidence 4 455554 89999999999987766532110 1 01111 234566665 6889999999988744
Q ss_pred eeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccC
Q 007234 238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK 291 (612)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~ 291 (612)
....... . .... .++..++.++.+|.|..+|..+++.+....
T Consensus 263 ---w~~~~~~-~-~~~~-------~~~~~l~~~~~~g~l~~~d~~tG~~~w~~~ 304 (376)
T 3q7m_A 263 ---WKRELGS-V-NDFI-------VDGNRIYLVDQNDRVMALTIDGGVTLWTQS 304 (376)
T ss_dssp ---EEECCCC-E-EEEE-------EETTEEEEEETTCCEEEEETTTCCEEEEEC
T ss_pred ---eeccCCC-C-CCce-------EECCEEEEEcCCCeEEEEECCCCcEEEeec
Confidence 2222211 1 1122 235678888899999999999998765443
No 227
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.02 E-value=7.8e-08 Score=95.36 Aligned_cols=190 Identities=13% Similarity=0.073 Sum_probs=118.8
Q ss_pred eEEEeeecccccccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCC
Q 007234 69 TCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT 148 (612)
Q Consensus 69 ~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~ 148 (612)
....|.+.. ..+++++..++.|..|+. ++... .+ ..+...+.+++++++|+++++...++.|..||..
T Consensus 48 egp~~~~~g--------~~l~~~d~~~~~i~~~~~-~g~~~-~~-~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~- 115 (305)
T 3dr2_A 48 EGPAWWEAQ--------RTLVWSDLVGRRVLGWRE-DGTVD-VL-LDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD- 115 (305)
T ss_dssp EEEEEEGGG--------TEEEEEETTTTEEEEEET-TSCEE-EE-EESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred cCCeEeCCC--------CEEEEEECCCCEEEEEeC-CCCEE-EE-eCCCCccceeeECCCCCEEEEECCCCEEEEECCC-
Confidence 345666542 336777778889999998 45432 23 2355678999999999866655556789999975
Q ss_pred CceeEEEecC----CCCeeEEEECCCCCEEEE----eC---------------CeEEEEEcCCCeeEEEEecCCCCEEEE
Q 007234 149 GSLLGKFRAS----TKGISCMAVSSDGKMLAT----AA---------------GQLKTFNCSDHKKMQKFSGHPGAVRFM 205 (612)
Q Consensus 149 ~~~~~~~~~~----~~~v~~l~~spdg~~l~~----~~---------------g~i~lwd~~~~~~~~~~~~h~~~v~~l 205 (612)
++........ ...+..++++|+|++.++ |. +.|+.||..+++..... .......+
T Consensus 116 g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl 193 (305)
T 3dr2_A 116 GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGL 193 (305)
T ss_dssp SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEE
T ss_pred CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcce
Confidence 5533222111 134678999999998886 21 46888888777654333 34456889
Q ss_pred EEeeCCcEEEEEEcC-----CCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEE
Q 007234 206 TFSDNGKYVLSSAVG-----ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY 280 (612)
Q Consensus 206 ~~sp~~~~l~s~s~~-----d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd 280 (612)
+|+|+++.|+.+... .+.|.+|++...... ....+. .........+.+. ++|++ .+++.+ .|.+|+
T Consensus 194 ~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~-~~~~~~-~~~~~~pdgi~~d-----~~G~l-wv~~~~-gv~~~~ 264 (305)
T 3dr2_A 194 AFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALH-DRRHFA-SVPDGLPDGFCVD-----RGGWL-WSSSGT-GVCVFD 264 (305)
T ss_dssp EECTTSSEEEEEECCC---CCCEEEEEEEETTEEE-EEEEEE-CCSSSCCCSEEEC-----TTSCE-EECCSS-EEEEEC
T ss_pred EEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCcc-CCeEEE-ECCCCCCCeEEEC-----CCCCE-EEecCC-cEEEEC
Confidence 999999988776532 268999998765311 111111 1111222344454 77774 344444 377776
Q ss_pred C
Q 007234 281 G 281 (612)
Q Consensus 281 ~ 281 (612)
.
T Consensus 265 ~ 265 (305)
T 3dr2_A 265 S 265 (305)
T ss_dssp T
T ss_pred C
Confidence 5
No 228
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.02 E-value=1.1e-07 Score=105.10 Aligned_cols=199 Identities=11% Similarity=0.099 Sum_probs=129.0
Q ss_pred CCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEECCC
Q 007234 17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGG 96 (612)
Q Consensus 17 g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g 96 (612)
+..++.++.++.|..+|..+|+.+.++.............. ..... .... . +..|++++.+|
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~----~~~~~---~~a~---~--------~~~v~v~~~dg 138 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCC----DVVNR---GVAL---W--------KGKVYVGAWDG 138 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSS----CSCCC---CCEE---E--------TTEEEEECTTS
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccc----cCCCC---CceE---E--------CCEEEEEcCCC
Confidence 44566777789999999999999998864332110000000 00000 0000 0 66789999999
Q ss_pred cEEEEEcCCCeEEEEeccCCC----CCeEEEEEecCCCEEEEEec------CCcEEEEECCCCceeEEEecCCCC-----
Q 007234 97 DVLALAVSAGQLKWRLSDCHP----GGVSAISFATHGSCIYSAGA------DGMVCEIDPLTGSLLGKFRASTKG----- 161 (612)
Q Consensus 97 ~I~vwd~~~~~~~~~~~~~h~----~~V~~l~~sp~~~~l~s~s~------dg~v~iwd~~~~~~~~~~~~~~~~----- 161 (612)
.|..+|..+|+.++++..... ..+.+--.- .+..++.++. ++.|+.+|..+|+.+-.+......
T Consensus 139 ~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~ 217 (677)
T 1kb0_A 139 RLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPF 217 (677)
T ss_dssp EEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCC
T ss_pred EEEEEECCCCCEEeeecCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccc
Confidence 999999999999988753201 112211111 2345565553 799999999999998877643211
Q ss_pred ---------------------------eeEEEECCCCCEEEEeC--C-------------------eEEEEEcCCCeeEE
Q 007234 162 ---------------------------ISCMAVSSDGKMLATAA--G-------------------QLKTFNCSDHKKMQ 193 (612)
Q Consensus 162 ---------------------------v~~l~~spdg~~l~~~~--g-------------------~i~lwd~~~~~~~~ 193 (612)
...++++|++..++.+. + .|..+|.++|+.+.
T Consensus 218 ~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W 297 (677)
T 1kb0_A 218 EDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKW 297 (677)
T ss_dssp SSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEE
T ss_pred cccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEE
Confidence 13578889888888776 2 49999999999987
Q ss_pred EEec--CC-------CCEEEEEEeeCC---cEEEEEEcCCCeEEEEEcCCCccc
Q 007234 194 KFSG--HP-------GAVRFMTFSDNG---KYVLSSAVGERYIALWRTDGVKKQ 235 (612)
Q Consensus 194 ~~~~--h~-------~~v~~l~~sp~~---~~l~s~s~~d~~i~vwd~~~~~~~ 235 (612)
.++. |. ....-+....+| ..++.++ .+|.++++|..+++..
T Consensus 298 ~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~-~~G~l~~lD~~tG~~l 350 (677)
T 1kb0_A 298 HYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAP-KNGFFFVLDRTNGKFI 350 (677)
T ss_dssp EEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECC-TTSEEEEEETTTCCEE
T ss_pred EEecCCCcccccccCCCcEEEecccCCcEeeEEEEEC-CCCEEEEEECCCCCEe
Confidence 7753 21 112223444577 5666665 7999999999998754
No 229
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.02 E-value=1.5e-10 Score=118.46 Aligned_cols=185 Identities=14% Similarity=0.126 Sum_probs=104.3
Q ss_pred CcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCC-Cee-
Q 007234 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK-GIS- 163 (612)
Q Consensus 86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~-~v~- 163 (612)
+..+++++.+|.|+.||..+|+.++++.. +.+.+..+..++..+++++.||.|+.||..+|+.+..+..+.. .+.
T Consensus 9 ~~~v~~gs~dg~v~a~d~~tG~~~W~~~~---~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~ 85 (369)
T 2hz6_A 9 ETLLFVSTLDGSLHAVSKRTGSIKWTLKE---DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA 85 (369)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEEC---CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEecC---CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence 67899999999999999999999988743 4555555667777788888999999999999988766543211 110
Q ss_pred EEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeE
Q 007234 164 CMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVL 241 (612)
Q Consensus 164 ~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~ 241 (612)
+..+. ++..+++++ +.++.||.++|+.+.++..+. ...++|++..+++++ .|+.|..||..+++..- .+
T Consensus 86 sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~-~dg~v~a~d~~tG~~~W---~~ 156 (369)
T 2hz6_A 86 SPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGR-TEYTITMYDTKTRELRW---NA 156 (369)
T ss_dssp CSCC------CCCCEEEEEEEEECCC--------------------------EEEEE-EEEEEECCCSSSSSCCC---EE
T ss_pred CceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEe-cCCEEEEEECCCCCEEE---eE
Confidence 11111 234555554 899999999999888776554 234567788888876 68999999999987541 11
Q ss_pred eecCCceeEEeEEecCCccCCCC---cEEEEEecCCcEEEEECCCcceecccC
Q 007234 242 AMEHPAVFMDCRCIDNGGVDDAG---LYVLAISETGVCYIWYGQNIEELRNTK 291 (612)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~---~~l~t~s~dg~i~iwd~~~~~~~~~~~ 291 (612)
.... .....+. ++. ..+++++.||.|+.||..+|+.+....
T Consensus 157 ~~~~----~~~~~~~-----~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~ 200 (369)
T 2hz6_A 157 TYFD----YAASLPE-----DDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN 200 (369)
T ss_dssp EEEE----ECCBCCC-----CCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred eccc----ccCcccc-----CCccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence 1110 0111111 321 457778999999999999998876443
No 230
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.01 E-value=4.4e-09 Score=106.87 Aligned_cols=165 Identities=12% Similarity=0.119 Sum_probs=115.1
Q ss_pred CcEEEEEECCCcEEEEEcCCCe---------EEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEe
Q 007234 86 SSLLVLGTGGGDVLALAVSAGQ---------LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR 156 (612)
Q Consensus 86 ~~~l~~gs~~g~I~vwd~~~~~---------~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~ 156 (612)
..++++|+.+ .+.+|++...+ ........+.. |+.++| ++++|+++ .++.|++||+.+........
T Consensus 49 ~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~ 123 (388)
T 1xip_A 49 KSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTVT 123 (388)
T ss_dssp TTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEE
T ss_pred CCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCccc
Confidence 6678888887 45559875433 11101123566 999999 88999998 88999999998877666677
Q ss_pred cCCCCeeEEEECCCCCEEEEeC-CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccc
Q 007234 157 ASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ 235 (612)
Q Consensus 157 ~~~~~v~~l~~spdg~~l~~~~-g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~ 235 (612)
.+..++.++.+.+.. ++++.. |.|.+||+++++... +...|++++|+|+| ++.+. .||.+++|+.......
T Consensus 124 ~~~~~v~~i~~~~p~-~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~-~dg~i~~~~~~~~~~~ 195 (388)
T 1xip_A 124 SFEKPVFQLKNVNNT-LVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLL-KDRSFQSFAWRNGEME 195 (388)
T ss_dssp ECSSCEEEEEECSSE-EEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEE-TTSCEEEEEEETTEEE
T ss_pred eeecceeeEEecCCC-EEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEE-cCCcEEEEcCCCcccc
Confidence 777888888887653 333334 999999999887643 44689999999999 45565 7999999988776521
Q ss_pred cceeeEee------c---CCceeEEeEEecCCccCCCCcEEEEEe
Q 007234 236 SASCVLAM------E---HPAVFMDCRCIDNGGVDDAGLYVLAIS 271 (612)
Q Consensus 236 ~~~~~~~~------~---~~~~~~~~~~~~~~~~~~~~~~l~t~s 271 (612)
. ...+ . .+...+..+.|. +++.++++-+
T Consensus 196 ~---k~~I~~Pp~~~~~~~~~~~V~sI~wl-----~~~~flv~y~ 232 (388)
T 1xip_A 196 K---QFEFSLPSELEELPVEEYSPLSVTIL-----SPQDFLAVFG 232 (388)
T ss_dssp E---EEEECCCHHHHTSCTTTSEEEEEEES-----SSSEEEEEEE
T ss_pred c---cceecCCcccccccCCCeeEEEEEEe-----cCCeEEEEEc
Confidence 0 1112 1 123455566666 7777777643
No 231
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.97 E-value=1.7e-07 Score=95.87 Aligned_cols=225 Identities=16% Similarity=0.118 Sum_probs=144.3
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEECC
Q 007234 16 ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGG 95 (612)
Q Consensus 16 dg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~ 95 (612)
++..+..++.++.|..+|..+|+.+..+....... +.+ .+ . +..+++++.+
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~-----~~p-----------~~----~---------~~~v~v~~~~ 152 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEAL-----SRP-----------VV----S---------DGLVLIHTSN 152 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCC-----SCC-----------EE----E---------TTEEEEECTT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceE-----cCC-----------EE----E---------CCEEEEEcCC
Confidence 45677788889999999999999887765322110 000 00 0 5578889999
Q ss_pred CcEEEEEcCCCeEEEEeccCCCCCe------EEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCC----ee--
Q 007234 96 GDVLALAVSAGQLKWRLSDCHPGGV------SAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG----IS-- 163 (612)
Q Consensus 96 g~I~vwd~~~~~~~~~~~~~h~~~V------~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~----v~-- 163 (612)
|.|..+|..+|+.+++.... ..+ ...... +..++.++.++.+..+|..+|+.+......... +.
T Consensus 153 g~l~~~d~~tG~~~W~~~~~--~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~ 228 (376)
T 3q7m_A 153 GQLQALNEADGAVKWTVNLD--MPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRL 228 (376)
T ss_dssp SEEEEEETTTCCEEEEEECC--C-----CCCCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC----------
T ss_pred CeEEEEECCCCcEEEEEeCC--CCceeecCCCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccc
Confidence 99999999999998877432 111 122222 456888888999999999999988776532110 00
Q ss_pred -EEEECC--CCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccce
Q 007234 164 -CMAVSS--DGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS 238 (612)
Q Consensus 164 -~l~~sp--dg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~ 238 (612)
.+...| .+..+++++ +.+..+|.++++.+..... .....+.. ++..++.++ .++.+..+|..+++..
T Consensus 229 ~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~--~~~~l~~~~-~~g~l~~~d~~tG~~~--- 300 (376)
T 3q7m_A 229 SDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKREL--GSVNDFIV--DGNRIYLVD-QNDRVMALTIDGGVTL--- 300 (376)
T ss_dssp -CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECC--CCEEEEEE--ETTEEEEEE-TTCCEEEEETTTCCEE---
T ss_pred cccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccC--CCCCCceE--ECCEEEEEc-CCCeEEEEECCCCcEE---
Confidence 011111 233444444 8999999999988766542 33444443 344566666 6889999999988743
Q ss_pred eeEeec-CCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceeccc
Q 007234 239 CVLAME-HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT 290 (612)
Q Consensus 239 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~ 290 (612)
.... ........... .+..|++++.+|.|+.+|..+++.+...
T Consensus 301 --w~~~~~~~~~~~~~~~-------~~~~l~v~~~~g~l~~~d~~tG~~~~~~ 344 (376)
T 3q7m_A 301 --WTQSDLLHRLLTSPVL-------YNGNLVVGDSEGYLHWINVEDGRFVAQQ 344 (376)
T ss_dssp --EEECTTTTSCCCCCEE-------ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred --EeecccCCCcccCCEE-------ECCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence 2222 11111111111 2367888999999999999999876543
No 232
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.97 E-value=6.6e-08 Score=106.71 Aligned_cols=241 Identities=20% Similarity=0.267 Sum_probs=153.7
Q ss_pred CCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEEC--
Q 007234 17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG-- 94 (612)
Q Consensus 17 g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~-- 94 (612)
+..++.++.|+.|..+|..+|+.+..+............+.+ .+ . +..++++..
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P-----------~v----~---------~~~v~vg~~~~ 172 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAP-----------RV----V---------KGKVIIGNGGA 172 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCC-----------EE----E---------TTEEEECCBCT
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCC-----------EE----E---------CCEEEEeCCCC
Confidence 557778888999999999999999887642111000000000 00 0 345666654
Q ss_pred ----CCcEEEEEcCCCeEEEEeccC--CC----------------------------CCeEEEEEecCCCEEEEEecCC-
Q 007234 95 ----GGDVLALAVSAGQLKWRLSDC--HP----------------------------GGVSAISFATHGSCIYSAGADG- 139 (612)
Q Consensus 95 ----~g~I~vwd~~~~~~~~~~~~~--h~----------------------------~~V~~l~~sp~~~~l~s~s~dg- 139 (612)
+|.|..+|..+|+.++++... .. .....+++.|++..++.++.++
T Consensus 173 ~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~ 252 (668)
T 1kv9_A 173 EYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGS 252 (668)
T ss_dssp TTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEE
T ss_pred CcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCC
Confidence 478999999999999887421 10 1112468888888888887766
Q ss_pred ------------------cEEEEECCCCceeEEEecCC---------CCeeEEEECCCCC---EEEEeC--CeEEEEEcC
Q 007234 140 ------------------MVCEIDPLTGSLLGKFRAST---------KGISCMAVSSDGK---MLATAA--GQLKTFNCS 187 (612)
Q Consensus 140 ------------------~v~iwd~~~~~~~~~~~~~~---------~~v~~l~~spdg~---~l~~~~--g~i~lwd~~ 187 (612)
.|..+|..+|+.+-.++... .+.....+..+|+ .++.++ |.++++|..
T Consensus 253 ~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~ 332 (668)
T 1kv9_A 253 PWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRT 332 (668)
T ss_dssp SSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETT
T ss_pred ccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECC
Confidence 39999999999988876521 2222233334675 566666 899999999
Q ss_pred CCeeEEEEecCCC------------CE------------------------EEEEEeeCCcEEEEEE-------------
Q 007234 188 DHKKMQKFSGHPG------------AV------------------------RFMTFSDNGKYVLSSA------------- 218 (612)
Q Consensus 188 ~~~~~~~~~~h~~------------~v------------------------~~l~~sp~~~~l~s~s------------- 218 (612)
+|+.+...+-... ++ ..++++|+...++...
T Consensus 333 tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~ 412 (668)
T 1kv9_A 333 NGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKD 412 (668)
T ss_dssp TCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGG
T ss_pred CCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccc
Confidence 9998754432110 00 1257777766555421
Q ss_pred ----------------------cCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcE
Q 007234 219 ----------------------VGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVC 276 (612)
Q Consensus 219 ----------------------~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i 276 (612)
..++.|..||+.+++.. ............ ... ..+.++++++.||.+
T Consensus 413 ~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~-----W~~~~~~~~~~~-~~~-----t~gg~vf~g~~dg~l 481 (668)
T 1kv9_A 413 FVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAA-----WKVPYPTHWNGG-TLS-----TAGNLVFQGTAAGQM 481 (668)
T ss_dssp CCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEE-----EEEEESSSCCCC-EEE-----ETTTEEEEECTTSEE
T ss_pred cccccccccCccccccCCCCCCCccceEEEEeCCCCcEE-----EEccCCCCCcCc-eeE-----eCCCEEEEECCcccc
Confidence 12478999999998754 222222211111 111 356788889999999
Q ss_pred EEEECCCcceecccCC
Q 007234 277 YIWYGQNIEELRNTKA 292 (612)
Q Consensus 277 ~iwd~~~~~~~~~~~~ 292 (612)
+.||.++++.+...+.
T Consensus 482 ~a~d~~tG~~l~~~~~ 497 (668)
T 1kv9_A 482 HAYSADKGEALWQFEA 497 (668)
T ss_dssp EEEETTTCCEEEEEEC
T ss_pred hhhhhhcChhheEecC
Confidence 9999999998865543
No 233
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.94 E-value=3.5e-07 Score=96.52 Aligned_cols=251 Identities=8% Similarity=0.033 Sum_probs=160.0
Q ss_pred EEEEeCCCcEEEEECCCCcEEEEeeccCCccc-ccccc---cccc--------------ccc--c-ccceeEEEeeeccc
Q 007234 20 FAICSGDARIKIWDTLKGQVQTEFADIASTET-TSLYG---NRLE--------------REH--L-SVDYTCMKWLSVDR 78 (612)
Q Consensus 20 las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~s---~~~~--------------~~~--~-~~~~~~~~w~~~~~ 78 (612)
|.||+..|.++|+-+-+++.+..+........ .--|. ...+ .|. . -.+.........+.
T Consensus 18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~g 97 (595)
T 1fwx_A 18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG 97 (595)
T ss_dssp EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEETT
T ss_pred EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCCC
Confidence 55788899999999999999988754332110 00000 0000 010 0 00001111111010
Q ss_pred ccccccCCcEEEEEECCCc-EEEEEcCCCeEEEEeccCCCCCeEEEEE-e-cCCCEEEEEe------------------c
Q 007234 79 KKKRKLGSSLLVLGTGGGD-VLALAVSAGQLKWRLSDCHPGGVSAISF-A-THGSCIYSAG------------------A 137 (612)
Q Consensus 79 ~~~~~~~~~~l~~gs~~g~-I~vwd~~~~~~~~~~~~~h~~~V~~l~~-s-p~~~~l~s~s------------------~ 137 (612)
+..++++++...++. |.+.|+.+.++...+.-.......++++ + |+++++++++ .
T Consensus 98 ----~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~ 173 (595)
T 1fwx_A 98 ----KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANY 173 (595)
T ss_dssp ----EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGE
T ss_pred ----CcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCccccccccc
Confidence 111667777666554 9999999999876332234456889998 5 9999998884 3
Q ss_pred CCcEEEEECCCCceeEEEecCCCCeeEEEECCCCCEEEEeC-C-------------------------------------
Q 007234 138 DGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-G------------------------------------- 179 (612)
Q Consensus 138 dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~-g------------------------------------- 179 (612)
++.+.++|..+.+...++.... ....++++|||+++++.+ +
T Consensus 174 ~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~ 252 (595)
T 1fwx_A 174 VNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQE 252 (595)
T ss_dssp EEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEE
T ss_pred CceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeE
Confidence 4689999999999888877544 457788999999998876 2
Q ss_pred --eEEEEEcCC--Cee-EEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCcc------cc-ceeeEeecCCc
Q 007234 180 --QLKTFNCSD--HKK-MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK------QS-ASCVLAMEHPA 247 (612)
Q Consensus 180 --~i~lwd~~~--~~~-~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~------~~-~~~~~~~~~~~ 247 (612)
.|.+.|.++ ++. +..++.- ....++.++|||+++++++..+.+|.++|+.+.+. .. ........ ..
T Consensus 253 i~~V~VID~~~~~~~~~~~~Ipvg-~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG 330 (595)
T 1fwx_A 253 LNGVKVVDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LG 330 (595)
T ss_dssp ETTEEEEECSGGGCCSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CC
T ss_pred ECcEEEEeCcccCCceeEEEEecC-CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CC
Confidence 266666666 444 4455432 23467899999999999887889999999986531 00 01122222 22
Q ss_pred eeEEeEEecCCccCCCCcEEEEE-ecCCcEEEEECCC
Q 007234 248 VFMDCRCIDNGGVDDAGLYVLAI-SETGVCYIWYGQN 283 (612)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~l~t~-s~dg~i~iwd~~~ 283 (612)
.-.....|+ ++| ++.+. -.|++|.+||+.+
T Consensus 331 ~gP~h~aF~-----~dG-~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 331 LGPLHTAFD-----GRG-NAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp SCEEEEEEC-----TTS-EEEEEETTTTEEEEEEHHH
T ss_pred CCcceEEEC-----CCC-eEEEEEecCCcEEEEEhhH
Confidence 234456676 999 55544 5599999999876
No 234
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.93 E-value=2.6e-07 Score=94.14 Aligned_cols=191 Identities=12% Similarity=0.062 Sum_probs=131.4
Q ss_pred CcEEEEEECCCcEEEEEcCCC----eEEEEec------cCCCCCeEEEEEecCCCEEEEEecC------CcEEEEECCCC
Q 007234 86 SSLLVLGTGGGDVLALAVSAG----QLKWRLS------DCHPGGVSAISFATHGSCIYSAGAD------GMVCEIDPLTG 149 (612)
Q Consensus 86 ~~~l~~gs~~g~I~vwd~~~~----~~~~~~~------~~h~~~V~~l~~sp~~~~l~s~s~d------g~v~iwd~~~~ 149 (612)
..+++.|..++.|.++|+.+. +....+. +.....-..+...|+| .++++..+ |.|.++|..++
T Consensus 96 ~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~ 174 (462)
T 2ece_A 96 RFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSF 174 (462)
T ss_dssp CEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTC
T ss_pred CEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCC
Confidence 345556667788999999765 4554441 1011245667888999 77777655 78999999999
Q ss_pred ceeEEEecCCC---CeeEEEECCCCCEEEEe---------------------CCeEEEEEcCCCeeEEEEecC-C-CCEE
Q 007234 150 SLLGKFRASTK---GISCMAVSSDGKMLATA---------------------AGQLKTFNCSDHKKMQKFSGH-P-GAVR 203 (612)
Q Consensus 150 ~~~~~~~~~~~---~v~~l~~spdg~~l~~~---------------------~g~i~lwd~~~~~~~~~~~~h-~-~~v~ 203 (612)
+.+.++..... .-+.+.|+|+++.+++. +++|.+||+.+++.+.++.-- . ....
T Consensus 175 ~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~ 254 (462)
T 2ece_A 175 EPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMAL 254 (462)
T ss_dssp CEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEE
T ss_pred eEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccc
Confidence 99999874322 23458889999999988 379999999999888888642 1 2344
Q ss_pred EEEE--eeCCcEEEEEEc-----CCCeEEEEEcCCCccccceeeEeecCC----------------ceeEEeEEecCCcc
Q 007234 204 FMTF--SDNGKYVLSSAV-----GERYIALWRTDGVKKQSASCVLAMEHP----------------AVFMDCRCIDNGGV 260 (612)
Q Consensus 204 ~l~~--sp~~~~l~s~s~-----~d~~i~vwd~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~ 260 (612)
.+.| +|++++++.++. .+++|.+|..+.+... ...+..+... ......+.++
T Consensus 255 ~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~-~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS---- 329 (462)
T 2ece_A 255 ELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWN-AEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDIS---- 329 (462)
T ss_dssp EEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEE-EEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEEC----
T ss_pred eeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCcee-EEEEEeCCCccccccccccccccccCCCceeEEEEC----
Confidence 5656 999999988876 6778888777654321 0111101100 1223444555
Q ss_pred CCCCcEEEEEec-CCcEEEEECCC
Q 007234 261 DDAGLYVLAISE-TGVCYIWYGQN 283 (612)
Q Consensus 261 ~~~~~~l~t~s~-dg~i~iwd~~~ 283 (612)
+||++|.++.. .+.|.+||+..
T Consensus 330 -~DGrfLYVSnrg~d~VavfdV~d 352 (462)
T 2ece_A 330 -LDDKFLYLSLWGIGEVRQYDISN 352 (462)
T ss_dssp -TTSCEEEEEETTTTEEEEEECSS
T ss_pred -CCCCEEEEEeCCCCEEEEEEecC
Confidence 99999999876 67999999853
No 235
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.89 E-value=5.9e-08 Score=98.26 Aligned_cols=230 Identities=9% Similarity=-0.064 Sum_probs=139.7
Q ss_pred EEEEEeCCC----cEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEE-
Q 007234 19 YFAICSGDA----RIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGT- 93 (612)
Q Consensus 19 ~las~s~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs- 93 (612)
.+++-..++ +|.++|..+++.+.++.....+ .+.++++ ++.++++.
T Consensus 34 ~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P--~i~~spD---------------------------g~~lyVan~ 84 (368)
T 1mda_H 34 SHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHS---------------------------GSDFALAST 84 (368)
T ss_dssp EEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTT---------------------------SSCEEEEEE
T ss_pred EEEECCccCCccceEEEEECCCCeEEEEEeCCCCC--ceEECCC---------------------------CCEEEEEcc
Confidence 334444455 8889999999999998754433 4555555 66677776
Q ss_pred ---------CCCcEEEEEcCCCeEEEEeccC--C----CCCeEEEEEecCCCEEEEEec--CCcEEE--EECCCCceeEE
Q 007234 94 ---------GGGDVLALAVSAGQLKWRLSDC--H----PGGVSAISFATHGSCIYSAGA--DGMVCE--IDPLTGSLLGK 154 (612)
Q Consensus 94 ---------~~g~I~vwd~~~~~~~~~~~~~--h----~~~V~~l~~sp~~~~l~s~s~--dg~v~i--wd~~~~~~~~~ 154 (612)
.++.|.+||+.+++.+.++.-+ . ......+.|+|||++++++.. +..|.+ +|..+ +..
T Consensus 85 ~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~ 161 (368)
T 1mda_H 85 SFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQL 161 (368)
T ss_dssp EETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEE
T ss_pred cccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceE
Confidence 3577999999999998887422 0 124568999999999999874 467888 88865 333
Q ss_pred EecCCC-------CeeEEEE-------------------------------------CCCCCEEEEeC-CeEEEEEcCCC
Q 007234 155 FRASTK-------GISCMAV-------------------------------------SSDGKMLATAA-GQLKTFNCSDH 189 (612)
Q Consensus 155 ~~~~~~-------~v~~l~~-------------------------------------spdg~~l~~~~-g~i~lwd~~~~ 189 (612)
+..... .-.-+++ .+++..++..+ +.+.+.|..+.
T Consensus 162 i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~~~V~viD~~~~ 241 (368)
T 1mda_H 162 TKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAA 241 (368)
T ss_dssp EECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSS
T ss_pred EECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCccccccCCEEEEEcCCEEEEEECCCC
Confidence 321100 0000111 12222222222 55666666432
Q ss_pred --eeEEEEec-------C---CCCEEEEEEeeCCcEEEEEEc---C-----CCeEEEEEcCCCccccceeeEeecCCcee
Q 007234 190 --KKMQKFSG-------H---PGAVRFMTFSDNGKYVLSSAV---G-----ERYIALWRTDGVKKQSASCVLAMEHPAVF 249 (612)
Q Consensus 190 --~~~~~~~~-------h---~~~v~~l~~sp~~~~l~s~s~---~-----d~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 249 (612)
+.+..+.- + ......+.|+|+++.++.+.. . +..+.++|+.+.+... .+.-.. .
T Consensus 242 ~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~-----~i~vg~-~ 315 (368)
T 1mda_H 242 GATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSG-----PISNGH-D 315 (368)
T ss_dssp CCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEE-----CCEEEE-E
T ss_pred cceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEE-----EEECCC-C
Confidence 22222210 0 011112689999998887642 1 2356699999987542 221111 2
Q ss_pred EEeEEecCCccCCCCc-EEEEEe-cCCcEEEEECCCcceecccC
Q 007234 250 MDCRCIDNGGVDDAGL-YVLAIS-ETGVCYIWYGQNIEELRNTK 291 (612)
Q Consensus 250 ~~~~~~~~~~~~~~~~-~l~t~s-~dg~i~iwd~~~~~~~~~~~ 291 (612)
...+.++ +||+ .+++.. .++.|.++|+.+++.++.++
T Consensus 316 p~gi~~s-----~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~ 354 (368)
T 1mda_H 316 SDAIIAA-----QDGASDNYANSAGTEVLDIYDAASDQDQSSVE 354 (368)
T ss_dssp ECEEEEC-----CSSSCEEEEEETTTTEEEEEESSSCEEEEECC
T ss_pred cceEEEC-----CCCCEEEEEccCCCCeEEEEECCCCcEEEEEE
Confidence 4456676 8987 455556 58999999999999887655
No 236
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.88 E-value=5.2e-07 Score=97.50 Aligned_cols=245 Identities=14% Similarity=0.116 Sum_probs=151.5
Q ss_pred EEcCCCCE----EEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCc
Q 007234 12 SFSPALDY----FAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (612)
Q Consensus 12 ~fspdg~~----las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (612)
+++|++.. ++.++.|+.|..+|..+|+.+...............+.+ .+ . +.
T Consensus 112 av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP-----------~v----~---------~g 167 (599)
T 1w6s_A 112 AYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAP-----------YV----V---------KD 167 (599)
T ss_dssp EEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCC-----------EE----E---------TT
T ss_pred EEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCC-----------EE----E---------CC
Confidence 66555545 778888999999999999998876532210000000000 00 0 34
Q ss_pred EEEEEEC------CCcEEEEEcCCCeEEEEeccCCCC------------------------------------Ce-EEEE
Q 007234 88 LLVLGTG------GGDVLALAVSAGQLKWRLSDCHPG------------------------------------GV-SAIS 124 (612)
Q Consensus 88 ~l~~gs~------~g~I~vwd~~~~~~~~~~~~~h~~------------------------------------~V-~~l~ 124 (612)
.+++++. +|.|+.+|..+|+.++++...... .+ ..++
T Consensus 168 ~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a 247 (599)
T 1w6s_A 168 KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYA 247 (599)
T ss_dssp EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCE
T ss_pred EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCcccccee
Confidence 5666653 789999999999999887432111 01 1356
Q ss_pred EecCCCEEEEEecC----------------CcEEEEECCCCceeEEEecCCC---------CeeEEEEC-CCC---CEEE
Q 007234 125 FATHGSCIYSAGAD----------------GMVCEIDPLTGSLLGKFRASTK---------GISCMAVS-SDG---KMLA 175 (612)
Q Consensus 125 ~sp~~~~l~s~s~d----------------g~v~iwd~~~~~~~~~~~~~~~---------~v~~l~~s-pdg---~~l~ 175 (612)
+.++...++.+..+ +.|..+|..+|+.+-.++.... ...-+... .+| +.++
T Consensus 248 ~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~ 327 (599)
T 1w6s_A 248 YDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLT 327 (599)
T ss_dssp EETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEE
T ss_pred EeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEE
Confidence 66777788877655 3899999999999887765322 11112222 567 4566
Q ss_pred EeC--CeEEEEEcCCCeeEEEEecCC-------------CCE--------------------------EEEEEeeCCcEE
Q 007234 176 TAA--GQLKTFNCSDHKKMQKFSGHP-------------GAV--------------------------RFMTFSDNGKYV 214 (612)
Q Consensus 176 ~~~--g~i~lwd~~~~~~~~~~~~h~-------------~~v--------------------------~~l~~sp~~~~l 214 (612)
.++ |.++++|.++|+.+....-.. .++ ..++++|+...+
T Consensus 328 ~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~ 407 (599)
T 1w6s_A 328 HPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELF 407 (599)
T ss_dssp EECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEE
T ss_pred EECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEE
Confidence 665 899999999999877654211 111 135667766655
Q ss_pred EEEEc--------------------------------------CCCeEEEEEcCCCccccceeeEeecCCceeEEeEEec
Q 007234 215 LSSAV--------------------------------------GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCID 256 (612)
Q Consensus 215 ~s~s~--------------------------------------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (612)
++... .++.+..||+.+++.. ...............
T Consensus 408 yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~-----W~~~~~~~~~~g~~~- 481 (599)
T 1w6s_A 408 FMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYK-----WEKMERFAVWGGTMA- 481 (599)
T ss_dssp EEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEE-----EEEEESSCCCSBCEE-
T ss_pred EEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEE-----eEecCCCCccCcceE-
Confidence 44310 2367888888887643 222211111111011
Q ss_pred CCccCCCCcEEEEEecCCcEEEEECCCcceecccC
Q 007234 257 NGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK 291 (612)
Q Consensus 257 ~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~ 291 (612)
..+..++.++.||.++.||.++|+.+...+
T Consensus 482 -----tagg~vf~gt~dg~l~A~D~~tG~~lW~~~ 511 (599)
T 1w6s_A 482 -----TAGDLVFYGTLDGYLKARDSDTGDLLWKFK 511 (599)
T ss_dssp -----ETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred -----ecCCEEEEECCCCeEEEEECCCCCEEEEee
Confidence 245677789999999999999999987654
No 237
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.86 E-value=2.8e-07 Score=87.20 Aligned_cols=174 Identities=6% Similarity=0.055 Sum_probs=121.2
Q ss_pred EEcCCCCEEEEEeCCC--cEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEE
Q 007234 12 SFSPALDYFAICSGDA--RIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (612)
Q Consensus 12 ~fspdg~~las~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (612)
.|+ ++.++.+.+.+| .|+++|+++|+.+.++..... .| . ..+... . +.+.
T Consensus 49 ~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~-----~F---------g---eGit~~--g--------~~ly 100 (262)
T 3nol_A 49 FYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKR-----YF---------G---EGISDW--K--------DKIV 100 (262)
T ss_dssp EEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTT-----CC---------E---EEEEEE--T--------TEEE
T ss_pred EEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCc-----cc---------e---eEEEEe--C--------CEEE
Confidence 788 677777777766 899999999999988752110 00 0 001110 0 3344
Q ss_pred EEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCC-----CCeeE
Q 007234 90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST-----KGISC 164 (612)
Q Consensus 90 ~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~-----~~v~~ 164 (612)
++.-.++.+.+||..+.+.+.++..+- .+..++++++.|+.+..++.|.++|..+.+.+.++.... ..++.
T Consensus 101 ~ltw~~~~v~v~D~~t~~~~~ti~~~~----eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNE 176 (262)
T 3nol_A 101 GLTWKNGLGFVWNIRNLRQVRSFNYDG----EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNE 176 (262)
T ss_dssp EEESSSSEEEEEETTTCCEEEEEECSS----CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEE
T ss_pred EEEeeCCEEEEEECccCcEEEEEECCC----CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccce
Confidence 444457789999999999998875422 223344678888877778889999999999888876532 23455
Q ss_pred EEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecC------------CCCEEEEEEeeCCcEEEEEE
Q 007234 165 MAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGH------------PGAVRFMTFSDNGKYVLSSA 218 (612)
Q Consensus 165 l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h------------~~~v~~l~~sp~~~~l~s~s 218 (612)
+.|. +|++.+..- +.|.+.|.++++.+..+.-. ..-.+.|+|+|+++.|+.+|
T Consensus 177 Le~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 177 LEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp EEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred eEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 7776 776555443 89999999999998887532 12458899999988777776
No 238
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.85 E-value=5.7e-08 Score=98.40 Aligned_cols=249 Identities=9% Similarity=-0.088 Sum_probs=146.5
Q ss_pred cEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEe----------cCCcEEEEECCCCceeEEEecCC-------
Q 007234 97 DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG----------ADGMVCEIDPLTGSLLGKFRAST------- 159 (612)
Q Consensus 97 ~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s----------~dg~v~iwd~~~~~~~~~~~~~~------- 159 (612)
.|.++|..+++.+.++..+.. + .+.++||+++++++. .+++|.+||+.+++.+.++....
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~-P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g 123 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFL-S--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVG 123 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTT-C--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBS
T ss_pred eEEEEECCCCeEEEEEeCCCC-C--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccC
Confidence 788999999999988866553 4 799999999999886 37899999999999999987541
Q ss_pred CCeeEEEECCCCCEEEEeC----CeEEE--EEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCC--
Q 007234 160 KGISCMAVSSDGKMLATAA----GQLKT--FNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG-- 231 (612)
Q Consensus 160 ~~v~~l~~spdg~~l~~~~----g~i~l--wd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~-- 231 (612)
.....++++|||++++++. +.+.+ +|..+ +.++.-. +. ..+.|+++..+.+.+.|+.+.+.++.+
T Consensus 124 ~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~-~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~ 196 (368)
T 1mda_H 124 PRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSA-SC---FHIHPGAAATHYLGSCPASLAASDLAAAP 196 (368)
T ss_dssp CCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECS-SC---CCCEEEETTEEECCCCTTSCEEEECCSSC
T ss_pred CCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECC-Cc---eEEccCCCeEEEEEcCCCCEEEEECcccc
Confidence 2457899999999999874 47888 99877 4455321 11 223455543333333688888888876
Q ss_pred ---Cccccce-eeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcc--ee-----------------c
Q 007234 232 ---VKKQSAS-CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE--EL-----------------R 288 (612)
Q Consensus 232 ---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~--~~-----------------~ 288 (612)
++..... ....... ... .+ +++..++..+. +.+.+.|..+.. .+ .
T Consensus 197 ~~~~~v~~~~t~~i~vg~--~P~---~~------~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~ 264 (368)
T 1mda_H 197 AAAGIVGAQCTGAQNCSS--QAA---QA------NYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSA 264 (368)
T ss_dssp CCCEECCCCSCTTSCBCS--CCE---EE------TTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEEC
T ss_pred ccCCeEEEEeeeeeeCCC--Ccc---cc------ccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccC
Confidence 3211000 0011111 111 13 45555555556 888888875421 11 1
Q ss_pred ccCCceeEeecccccCCCCcccchhhhcccc-c-ceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEec
Q 007234 289 NTKATKILSSSEDVNSKSQKSATAAIFAAKL-Q-DIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPM 366 (612)
Q Consensus 289 ~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~-d-~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~ 366 (612)
...+.. ++++++ .+..+.. . +.+........+.+-. ......++.... ..+.++|++||+.+.+
T Consensus 265 g~~~v~--------~s~dg~----~lyV~~~~~~~~~~~~~~~~~ViD~~-t~~vv~~i~vg~-~p~gi~~s~Dg~~l~v 330 (368)
T 1mda_H 265 GFQMVA--------KLKNTD----GIMILTVEHSRSCLAAAENTSSVTAS-VGQTSGPISNGH-DSDAIIAAQDGASDNY 330 (368)
T ss_dssp SSSCEE--------EETTTT----EEEEEEEECSSCTTSCEEEEEEEESS-SCCEEECCEEEE-EECEEEECCSSSCEEE
T ss_pred cceeeE--------EcCCCC----EEEEEeccccCcccccCCCEEEEECC-CCeEEEEEECCC-CcceEEECCCCCEEEE
Confidence 112221 344444 2222211 1 0000001111233322 223333444333 5788999999986536
Q ss_pred ccc-ceeeecceeeec
Q 007234 367 SQS-LLKSKRGRYVQN 381 (612)
Q Consensus 367 s~s-~d~~~~~w~~~~ 381 (612)
+.. .++++.+++...
T Consensus 331 a~~~~~~~VsVID~~t 346 (368)
T 1mda_H 331 ANSAGTEVLDIYDAAS 346 (368)
T ss_dssp EEETTTTEEEEEESSS
T ss_pred EccCCCCeEEEEECCC
Confidence 666 588999998743
No 239
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.84 E-value=6.5e-07 Score=96.71 Aligned_cols=240 Identities=15% Similarity=0.136 Sum_probs=150.0
Q ss_pred CCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEEC--
Q 007234 17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG-- 94 (612)
Q Consensus 17 g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~-- 94 (612)
+..++.++.|+.|..+|..+|+.+..+............+.+ +. . +..+++++.
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P------------~v---~---------~g~v~vg~~~~ 170 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAP------------FV---A---------KDTVLMGCSGA 170 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCC------------EE---E---------TTEEEEECBCG
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCC------------EE---E---------CCEEEEEecCC
Confidence 556778888999999999999998877532210000000000 00 0 345666665
Q ss_pred ----CCcEEEEEcCCCeEEEEeccCCCC-------------------------------------CeEEEEEecCCCEEE
Q 007234 95 ----GGDVLALAVSAGQLKWRLSDCHPG-------------------------------------GVSAISFATHGSCIY 133 (612)
Q Consensus 95 ----~g~I~vwd~~~~~~~~~~~~~h~~-------------------------------------~V~~l~~sp~~~~l~ 133 (612)
+|.|..+|..+|+.++++...... ....+++.++...++
T Consensus 171 ~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy 250 (571)
T 2ad6_A 171 ELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFY 250 (571)
T ss_dssp GGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEE
T ss_pred ccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEE
Confidence 789999999999999876432110 002356777666777
Q ss_pred EEecC----------------CcEEEEECCCCceeEEEecCC---------CCeeEEEECCCCC---EEEEeC--CeEEE
Q 007234 134 SAGAD----------------GMVCEIDPLTGSLLGKFRAST---------KGISCMAVSSDGK---MLATAA--GQLKT 183 (612)
Q Consensus 134 s~s~d----------------g~v~iwd~~~~~~~~~~~~~~---------~~v~~l~~spdg~---~l~~~~--g~i~l 183 (612)
.++.+ +.|..+|..+|+.+-.++... ....-+...++|+ .++.++ |.+++
T Consensus 251 ~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~ 330 (571)
T 2ad6_A 251 YGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYT 330 (571)
T ss_dssp EECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEE
T ss_pred EECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEE
Confidence 66532 359999999999988776421 1111122234774 556666 89999
Q ss_pred EEcCCCeeEEEEecCC-------------CCE--------------------------EEEEEeeCCcEEEEEEc-----
Q 007234 184 FNCSDHKKMQKFSGHP-------------GAV--------------------------RFMTFSDNGKYVLSSAV----- 219 (612)
Q Consensus 184 wd~~~~~~~~~~~~h~-------------~~v--------------------------~~l~~sp~~~~l~s~s~----- 219 (612)
+|.++++.+..+.-.. .++ ..++|+|+...++..+.
T Consensus 331 lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~ 410 (571)
T 2ad6_A 331 LNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMD 410 (571)
T ss_dssp EETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEE
T ss_pred EECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhcccc
Confidence 9999999877664221 111 23577887776666531
Q ss_pred -------------------------------CCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEE
Q 007234 220 -------------------------------GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVL 268 (612)
Q Consensus 220 -------------------------------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 268 (612)
.++.+..||+.+++.. ............... ..+..++
T Consensus 411 ~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~-----W~~~~~~~~~~~~~~------t~gg~v~ 479 (571)
T 2ad6_A 411 WEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAK-----WTKWEKFAAWGGTLY------TKGGLVW 479 (571)
T ss_dssp EEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEE-----EEEEESSCCCSBCEE------ETTTEEE
T ss_pred ccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEE-----EEecCCCCccceeEE------ECCCEEE
Confidence 2478889998888744 222222111111111 2346677
Q ss_pred EEecCCcEEEEECCCcceecccC
Q 007234 269 AISETGVCYIWYGQNIEELRNTK 291 (612)
Q Consensus 269 t~s~dg~i~iwd~~~~~~~~~~~ 291 (612)
.++.||.|+.||.++++.+..++
T Consensus 480 ~g~~dg~l~a~D~~tG~~lw~~~ 502 (571)
T 2ad6_A 480 YATLDGYLKALDNKDGKELWNFK 502 (571)
T ss_dssp EECTTSEEEEEETTTCCEEEEEE
T ss_pred EEcCCCeEEEEECCCCCEEEEEe
Confidence 78999999999999999886554
No 240
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.84 E-value=1.1e-07 Score=105.63 Aligned_cols=186 Identities=13% Similarity=0.047 Sum_probs=121.1
Q ss_pred CcEEEEEE-CCC----cEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCc-------------EEEEECC
Q 007234 86 SSLLVLGT-GGG----DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGM-------------VCEIDPL 147 (612)
Q Consensus 86 ~~~l~~gs-~~g----~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~-------------v~iwd~~ 147 (612)
+++++.+. .+| .|++||+.+++.+...... ....+++|+ ||+.|+.++.+.. |++|++.
T Consensus 140 g~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~--~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lg 216 (693)
T 3iuj_A 140 GRILAYSLSLAGSDWREIHLMDVESKQPLETPLKD--VKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLG 216 (693)
T ss_dssp SSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEE--EESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETT
T ss_pred CCEEEEEEecCCCceEEEEEEECCCCCCCccccCC--ceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECC
Confidence 66666443 334 4999999999876432211 113577899 9999998887743 9999998
Q ss_pred CCce--eEEEec---CCCCeeEEEECCCCCEEEEeC------CeEEEEEcCCCe-eEEEEecCCCCEEEEEEeeCCcEEE
Q 007234 148 TGSL--LGKFRA---STKGISCMAVSSDGKMLATAA------GQLKTFNCSDHK-KMQKFSGHPGAVRFMTFSDNGKYVL 215 (612)
Q Consensus 148 ~~~~--~~~~~~---~~~~v~~l~~spdg~~l~~~~------g~i~lwd~~~~~-~~~~~~~h~~~v~~l~~sp~~~~l~ 215 (612)
++.. ...+.. +...+.++.|+|||++|+... +.|+++|+.++. ....+..+....... ++++|..|+
T Consensus 217 t~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~ 295 (693)
T 3iuj_A 217 TAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLY 295 (693)
T ss_dssp SCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEE
T ss_pred CCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEE
Confidence 7653 223332 334578899999999886543 489999998763 455666676666555 667666665
Q ss_pred EEEcCC---CeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEec-CC--cEEEEECCCcc
Q 007234 216 SSAVGE---RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-TG--VCYIWYGQNIE 285 (612)
Q Consensus 216 s~s~~d---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~-dg--~i~iwd~~~~~ 285 (612)
..+..+ +.|..+++.++...... ....+....+ .++ +++++|+.... +| .|++|++..+.
T Consensus 296 ~~t~~~~~~~~l~~~d~~~~~~~~~~--~l~~~~~~~~---~~s-----~~g~~lv~~~~~~g~~~l~~~d~~g~~ 361 (693)
T 3iuj_A 296 LLTNRDAPNRRLVTVDAANPGPAHWR--DLIPERQQVL---TVH-----SGSGYLFAEYMVDATARVEQFDYEGKR 361 (693)
T ss_dssp EEECTTCTTCEEEEEETTSCCGGGCE--EEECCCSSCE---EEE-----EETTEEEEEEEETTEEEEEEECTTSCE
T ss_pred EEECCCCCCCEEEEEeCCCCCccccE--EEecCCCCEE---EEE-----EECCEEEEEEEECCeeEEEEEECCCCe
Confidence 554333 57999999876542111 1223444333 455 77777776655 44 68999987543
No 241
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.82 E-value=2.9e-07 Score=92.90 Aligned_cols=189 Identities=10% Similarity=0.100 Sum_probs=117.9
Q ss_pred eEEEEcCCCCEEEEEeC-----CCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccc
Q 007234 9 ILTSFSPALDYFAICSG-----DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (612)
Q Consensus 9 l~~~fspdg~~las~s~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (612)
..++|+|+|+++++-.. ++.|.+||..+++.+..+........ + ......+...+..
T Consensus 70 ~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~-----------~-~~~~~~v~vd~~~------ 131 (343)
T 2qe8_A 70 LGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITL-----------S-NSFVNDLAVDLIH------ 131 (343)
T ss_dssp EEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSC-----------T-TCCCCEEEEETTT------
T ss_pred eEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcc-----------c-ccccceEEEecCC------
Confidence 35599999987766543 57899999999998777653211000 0 0011223333221
Q ss_pred cCCcEEEEEE---CCCcEEEEEcCCCeEEEEeccCCC-----------------------------CCeEEEEEecCCCE
Q 007234 84 LGSSLLVLGT---GGGDVLALAVSAGQLKWRLSDCHP-----------------------------GGVSAISFATHGSC 131 (612)
Q Consensus 84 ~~~~~l~~gs---~~g~I~vwd~~~~~~~~~~~~~h~-----------------------------~~V~~l~~sp~~~~ 131 (612)
+..+++.. .++.|.+||+.+++....+ .+|. ..+.+++|+|+|+.
T Consensus 132 --g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~-~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ 208 (343)
T 2qe8_A 132 --NFVYISDPAPDDKAALIRVDLQTGLAARVL-QGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEW 208 (343)
T ss_dssp --TEEEEEECCSGGGCEEEEEETTTCCEEEEC-TTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCE
T ss_pred --CEEEEEcCccCCCCeEEEEECCCCCEEEEe-cCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCE
Confidence 33334444 5677999999988765433 2221 23688999999999
Q ss_pred EEEEecCC-cEEEEECC---CCc-----eeE--EEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEec-
Q 007234 132 IYSAGADG-MVCEIDPL---TGS-----LLG--KFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSG- 197 (612)
Q Consensus 132 l~s~s~dg-~v~iwd~~---~~~-----~~~--~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~- 197 (612)
|+.+..++ .+..++.. .+. ... ...++......++++++|.++++.. +.|.+||.++++.......
T Consensus 209 ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~ 288 (343)
T 2qe8_A 209 LYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDE 288 (343)
T ss_dssp EEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECG
T ss_pred EEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECC
Confidence 98887766 55555431 111 000 1112334567799999998888776 8999999866764333322
Q ss_pred CCCCEEEEEEeeCCcEEEEEE
Q 007234 198 HPGAVRFMTFSDNGKYVLSSA 218 (612)
Q Consensus 198 h~~~v~~l~~sp~~~~l~s~s 218 (612)
+-..+.+++|.++++++++.+
T Consensus 289 ~~~~p~~va~~~~g~l~v~~~ 309 (343)
T 2qe8_A 289 KLSWTDSFNFGSDGYLYFDCN 309 (343)
T ss_dssp GGSCEEEEEECTTSCEEEEEC
T ss_pred ceecCCeeEECCCCcEEEEeC
Confidence 245688999999988777665
No 242
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.78 E-value=7.5e-08 Score=96.27 Aligned_cols=222 Identities=16% Similarity=0.189 Sum_probs=136.8
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEE
Q 007234 12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL 91 (612)
Q Consensus 12 ~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~ 91 (612)
.++.+|. +..++.++.|..|| .+++....+......+..+... . +..+.+
T Consensus 26 ~~d~~g~-l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~---------------------~-------~g~l~v 75 (330)
T 3hxj_A 26 ILAKNGT-IYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIG---------------------K-------DGTIYF 75 (330)
T ss_dssp EECTTSC-EECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEET---------------------T-------TTEECC
T ss_pred eEccCCe-EEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEe---------------------c-------CCcEEE
Confidence 5556665 45566788899999 8888766543211111100000 0 334566
Q ss_pred EECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEEEECCCC
Q 007234 92 GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDG 171 (612)
Q Consensus 92 gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg 171 (612)
++.+ |..||. +++.++.+. ..........+. +..++.++.++.|..+|.. ++....+......+.++...+++
T Consensus 76 ~t~~--l~~~d~-~g~~~~~~~-~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g 148 (330)
T 3hxj_A 76 GSDK--VYAINP-DGTEKWRFD-TKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDG 148 (330)
T ss_dssp SSCE--EEEECC-CGGGGGGSC-C-----CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTS
T ss_pred ecCc--EEEECC-CCcEEEEEE-CCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCC
Confidence 6555 888886 565544332 122222333333 4568888889999999988 87777766655667778888888
Q ss_pred CEEEEeC-CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeE
Q 007234 172 KMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFM 250 (612)
Q Consensus 172 ~~l~~~~-g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 250 (612)
.+++... +.|..+|.. ++.+..+......+.++.+.+++..++ ++ +.+..+| .+++.. .........+
T Consensus 149 ~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v-~t---~~l~~~d-~~g~~~-----~~~~~~~~~~ 217 (330)
T 3hxj_A 149 TIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYF-GS---DKVYAIN-PDGTEK-----WNFYAGYWTV 217 (330)
T ss_dssp CEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEE-ES---SSEEEEC-TTSCEE-----EEECCSSCCC
T ss_pred EEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEE-Ee---CEEEEEC-CCCcEE-----EEEccCCcce
Confidence 8777665 899999998 877777766566677777777887544 32 6788899 555432 2222222333
Q ss_pred EeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceec
Q 007234 251 DCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR 288 (612)
Q Consensus 251 ~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~ 288 (612)
...... ++| .|..++.++.|..+|. +++.+.
T Consensus 218 ~~~~~~-----~~g-~l~v~t~~~gl~~~~~-~g~~~~ 248 (330)
T 3hxj_A 218 TRPAIS-----EDG-TIYVTSLDGHLYAINP-DGTEKW 248 (330)
T ss_dssp SCCEEC-----TTS-CEEEEETTTEEEEECT-TSCEEE
T ss_pred eceEEC-----CCC-eEEEEcCCCeEEEECC-CCCEeE
Confidence 344443 555 4666777888888874 454443
No 243
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.76 E-value=6.1e-06 Score=79.77 Aligned_cols=202 Identities=9% Similarity=-0.040 Sum_probs=124.4
Q ss_pred eeEEEeeecccccccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEE-ecCCcEEEEEC
Q 007234 68 YTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSA-GADGMVCEIDP 146 (612)
Q Consensus 68 ~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~-s~dg~v~iwd~ 146 (612)
...+.|.+.+ +.++++-..++.|..+++..+...... ........+++++|++..++.+ ...+.|.++++
T Consensus 38 ~~gi~~d~~~--------~~ly~~d~~~~~I~~~~~~g~~~~~~~-~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~ 108 (267)
T 1npe_A 38 IIGLAFDCVD--------KVVYWTDISEPSIGRASLHGGEPTTII-RQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKM 108 (267)
T ss_dssp EEEEEEETTT--------TEEEEEETTTTEEEEEESSSCCCEEEE-CTTCCCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred EEEEEEecCC--------CEEEEEECCCCEEEEEecCCCCcEEEE-ECCCCCccEEEEEecCCeEEEEECCCCEEEEEEc
Confidence 3456665542 344555556678999999876543222 2223568999999976666555 45678999998
Q ss_pred CCCceeEEEecCCCCeeEEEECCCCCEEEEeC-----CeEEEEEcCCCeeEEEE-ecCCCCEEEEEEeeCCcEEEEEEcC
Q 007234 147 LTGSLLGKFRASTKGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKKMQKF-SGHPGAVRFMTFSDNGKYVLSSAVG 220 (612)
Q Consensus 147 ~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~-----g~i~lwd~~~~~~~~~~-~~h~~~v~~l~~sp~~~~l~s~s~~ 220 (612)
..................++++|++..|+.+. +.|..+++.... ...+ ...-.....++++|++..|+.+...
T Consensus 109 ~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~~~~~~~P~gia~d~~~~~lyv~d~~ 187 (267)
T 1npe_A 109 DGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILAQDNLGLPNGLTFDAFSSQLCWVDAG 187 (267)
T ss_dssp TSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEECTTCSCEEEEEEETTTTEEEEEETT
T ss_pred CCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEEEEECCCCCCcEEEEcCCCCEEEEEECC
Confidence 64433222332234678999999766555443 478888876432 2223 2333457899999988777777666
Q ss_pred CCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccC
Q 007234 221 ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK 291 (612)
Q Consensus 221 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~ 291 (612)
.+.|.++++...... ... ...... ..++. .++..+++...++.|..+|..+++.+..+.
T Consensus 188 ~~~I~~~~~~g~~~~---~~~--~~~~~P-~gi~~------d~~~lyva~~~~~~v~~~d~~~g~~~~~i~ 246 (267)
T 1npe_A 188 THRAECLNPAQPGRR---KVL--EGLQYP-FAVTS------YGKNLYYTDWKTNSVIAMDLAISKEMDTFH 246 (267)
T ss_dssp TTEEEEEETTEEEEE---EEE--ECCCSE-EEEEE------ETTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred CCEEEEEecCCCceE---EEe--cCCCCc-eEEEE------eCCEEEEEECCCCeEEEEeCCCCCceEEEc
Confidence 789999998764322 111 111111 22333 233444444456899999999888765543
No 244
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.75 E-value=1.2e-06 Score=87.33 Aligned_cols=216 Identities=19% Similarity=0.242 Sum_probs=139.1
Q ss_pred CCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEECCC
Q 007234 17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGG 96 (612)
Q Consensus 17 g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g 96 (612)
+..+..++.++.|..+|.. |+....+......+....... +..+.+|+.++
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~----------------------------~g~l~vgt~~~ 157 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSE----------------------------DGTIYVGSNDN 157 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECT----------------------------TSCEEEECTTS
T ss_pred CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcC----------------------------CCEEEEEcCCC
Confidence 3345566667788888877 766655543221111111100 33477888889
Q ss_pred cEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEEEECCCCCEEEE
Q 007234 97 DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLAT 176 (612)
Q Consensus 97 ~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~ 176 (612)
.|..||.. ++..+.+. .....+.++.+.+++. ++.++ +.|..+| .+++....+......+.++...++|.+.+.
T Consensus 158 ~l~~~d~~-g~~~~~~~-~~~~~~~~~~~d~~g~-l~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~ 231 (330)
T 3hxj_A 158 YLYAINPD-GTEKWRFK-TNDAITSAASIGKDGT-IYFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYVT 231 (330)
T ss_dssp EEEEECTT-SCEEEEEE-CSSCCCSCCEECTTCC-EEEES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEEE
T ss_pred EEEEECCC-CCEeEEEe-cCCCceeeeEEcCCCE-EEEEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEEE
Confidence 99999999 87776663 2345677777777776 55555 8899999 788777777666667889999999888777
Q ss_pred eC-CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEe
Q 007234 177 AA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCI 255 (612)
Q Consensus 177 ~~-g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (612)
.. +.+..+|. +++.+..+......+..+.+.+++. +..++ .++.+..+|. +++.. .........+.....
T Consensus 232 t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t-~~ggl~~~d~-~g~~~-----~~~~~~~~~~~~~~~ 302 (330)
T 3hxj_A 232 SLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTDT-IYFGS-YDGHLYAINP-DGTEK-----WNFETGSWIIATPVI 302 (330)
T ss_dssp ETTTEEEEECT-TSCEEEEEECSSCCCSCCEECTTSC-EEEEC-TTCEEEEECT-TSCEE-----EEEECSSCCCSCCEE
T ss_pred cCCCeEEEECC-CCCEeEEeeCCCCccccceEcCCCe-EEEec-CCCCEEEECC-CCcEE-----EEEEcCCccccceEE
Confidence 65 88888884 5666666655444445566666775 44454 5778999985 44422 222222333333444
Q ss_pred cCCccCCCCcEEEEEecCCcEEEEECC
Q 007234 256 DNGGVDDAGLYVLAISETGVCYIWYGQ 282 (612)
Q Consensus 256 ~~~~~~~~~~~l~t~s~dg~i~iwd~~ 282 (612)
. ++|. |..++.+|.+++...+
T Consensus 303 d-----~~g~-l~~gt~~G~~~~~~~~ 323 (330)
T 3hxj_A 303 D-----ENGT-IYFGTRNGKFYALFNL 323 (330)
T ss_dssp C-----TTCC-EEEECTTSCEEEEEC-
T ss_pred c-----CCCE-EEEEcCCCeEEEEecc
Confidence 3 5555 6778999999988654
No 245
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.72 E-value=3.6e-06 Score=78.92 Aligned_cols=174 Identities=10% Similarity=0.124 Sum_probs=120.9
Q ss_pred EEcCCCCEEEEEeCC--CcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEE
Q 007234 12 SFSPALDYFAICSGD--ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (612)
Q Consensus 12 ~fspdg~~las~s~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (612)
.|++ +.++.+.+.+ ..|+++|+.+|+.+..+..... .... .+... ++.+.
T Consensus 27 ~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~--------------~fge---Gi~~~----------~~~ly 78 (243)
T 3mbr_X 27 FYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPP--------------YFGA---GIVAW----------RDRLI 78 (243)
T ss_dssp EEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTT--------------CCEE---EEEEE----------TTEEE
T ss_pred EEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCC--------------ccee---EEEEe----------CCEEE
Confidence 7776 5666666665 4899999999999987752211 0000 11110 04455
Q ss_pred EEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCC-----CCeeE
Q 007234 90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST-----KGISC 164 (612)
Q Consensus 90 ~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~-----~~v~~ 164 (612)
++.-.++.+.+||..+.+.+.++..+. .=.++ .++++.|+.+..++.|.++|..+.+.+.++.... ..++.
T Consensus 79 ~ltw~~~~v~v~D~~tl~~~~ti~~~~--~Gwgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNe 154 (243)
T 3mbr_X 79 QLTWRNHEGFVYDLATLTPRARFRYPG--EGWAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNE 154 (243)
T ss_dssp EEESSSSEEEEEETTTTEEEEEEECSS--CCCEE--EECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEE
T ss_pred EEEeeCCEEEEEECCcCcEEEEEeCCC--CceEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCccccccee
Confidence 555567889999999999998885432 22344 4577778877778999999999999888876532 24556
Q ss_pred EEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecC-------------CCCEEEEEEeeCCcEEEEEE
Q 007234 165 MAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGH-------------PGAVRFMTFSDNGKYVLSSA 218 (612)
Q Consensus 165 l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h-------------~~~v~~l~~sp~~~~l~s~s 218 (612)
+.+. +|+..+..- ..|.+.|.++++.+..+.-. ..-.+.|+++|+++.|+.+|
T Consensus 155 Le~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 155 LEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp EEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred eEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 6766 676665543 79999999999998887521 12467899999887777765
No 246
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.72 E-value=5.3e-06 Score=91.41 Aligned_cols=198 Identities=14% Similarity=0.186 Sum_probs=127.7
Q ss_pred CCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEECCC
Q 007234 17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGG 96 (612)
Q Consensus 17 g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g 96 (612)
+..+..++.++.|..+|..+|+.+..+............... ...... ..+ +..+++++.+|
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~----~~~~~~--~~~------------~~~v~v~~~dg 127 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCD----AVNRGV--ALW------------GDKVYVGTLDG 127 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTC----SCCCCC--EEE------------BTEEEEECTTS
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCcccccccccc----CCccce--EEE------------CCEEEEEcCCC
Confidence 446677778899999999999999888643321110000000 000000 001 56788999999
Q ss_pred cEEEEEcCCCeEEEEeccCCC---CCeEE-EEEecCCCEEEEEec------CCcEEEEECCCCceeEEEecCCC------
Q 007234 97 DVLALAVSAGQLKWRLSDCHP---GGVSA-ISFATHGSCIYSAGA------DGMVCEIDPLTGSLLGKFRASTK------ 160 (612)
Q Consensus 97 ~I~vwd~~~~~~~~~~~~~h~---~~V~~-l~~sp~~~~l~s~s~------dg~v~iwd~~~~~~~~~~~~~~~------ 160 (612)
.|..+|..+|+.++++..... ..+.+ ..+ .++ .++.++. +|.|..+|..+|+.+-.+.....
T Consensus 128 ~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v-~~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~ 205 (668)
T 1kv9_A 128 RLIALDAKTGKAIWSQQTTDPAKPYSITGAPRV-VKG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPY 205 (668)
T ss_dssp EEEEEETTTCCEEEEEECSCTTSSCBCCSCCEE-ETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCC
T ss_pred EEEEEECCCCCEeeeeccCCCCCcceecCCCEE-ECC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccc
Confidence 999999999999988754221 11111 111 134 5555543 58999999999999888753110
Q ss_pred -------------------------CeeEEEECCCCCEEEEeC--C-------------------eEEEEEcCCCeeEEE
Q 007234 161 -------------------------GISCMAVSSDGKMLATAA--G-------------------QLKTFNCSDHKKMQK 194 (612)
Q Consensus 161 -------------------------~v~~l~~spdg~~l~~~~--g-------------------~i~lwd~~~~~~~~~ 194 (612)
....++++|++.+++.+. + .|..+|.++|+.+..
T Consensus 206 ~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~ 285 (668)
T 1kv9_A 206 EHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWH 285 (668)
T ss_dssp SSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEE
T ss_pred cccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeE
Confidence 112468888888887776 3 399999999999887
Q ss_pred Eec--CC-------CCEEEEEEeeCCc---EEEEEEcCCCeEEEEEcCCCccc
Q 007234 195 FSG--HP-------GAVRFMTFSDNGK---YVLSSAVGERYIALWRTDGVKKQ 235 (612)
Q Consensus 195 ~~~--h~-------~~v~~l~~sp~~~---~l~s~s~~d~~i~vwd~~~~~~~ 235 (612)
++. |. .+.....+..+|+ .++.++ .+|.++++|..+++..
T Consensus 286 ~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~-~~G~l~~lD~~tG~~l 337 (668)
T 1kv9_A 286 YQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAP-KNGFFYVLDRTNGKLI 337 (668)
T ss_dssp EESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECC-TTSEEEEEETTTCCEE
T ss_pred eecCCCccccccCCCCcEEEEeccCCcEEEEEEEEC-CCCEEEEEECCCCCEe
Confidence 764 22 3333334445775 466655 7999999999998754
No 247
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.71 E-value=2.4e-06 Score=92.40 Aligned_cols=246 Identities=17% Similarity=0.128 Sum_probs=147.5
Q ss_pred CCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCc-EEEEEEC-
Q 007234 17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS-LLVLGTG- 94 (612)
Q Consensus 17 g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~-~l~~gs~- 94 (612)
+..++.++.|+.|..+|..+|+.+..+............+.+ +... +.. +++ .+++++.
T Consensus 117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP------------~v~~--~~~-----~G~~~v~vg~~~ 177 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAP------------TIVK--DGK-----TGKVLLIHGSSG 177 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCC------------EEEE--CTT-----TCCEEEEECCBC
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCC------------EEeC--CCc-----CCcEEEEEeccc
Confidence 556777888999999999999998877532211000000000 0000 000 022 5666653
Q ss_pred -----CCcEEEEEcCCCeEEEEeccCCC----------------------------------------CCeEEEEEecCC
Q 007234 95 -----GGDVLALAVSAGQLKWRLSDCHP----------------------------------------GGVSAISFATHG 129 (612)
Q Consensus 95 -----~g~I~vwd~~~~~~~~~~~~~h~----------------------------------------~~V~~l~~sp~~ 129 (612)
+|.|..+|..+|+.+++...... ..-..+++.|+.
T Consensus 178 ~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~ 257 (582)
T 1flg_A 178 DEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAET 257 (582)
T ss_dssp GGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTT
T ss_pred cccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCC
Confidence 78899999999999886532100 000135667777
Q ss_pred CEEEEEec--------------------C----CcEEEEECCCCceeEEEecCCC---------CeeEEEEC-CCCC---
Q 007234 130 SCIYSAGA--------------------D----GMVCEIDPLTGSLLGKFRASTK---------GISCMAVS-SDGK--- 172 (612)
Q Consensus 130 ~~l~s~s~--------------------d----g~v~iwd~~~~~~~~~~~~~~~---------~v~~l~~s-pdg~--- 172 (612)
..++.+.. | +.|..+|..+|+.+-.++.... ...-+... .+|+
T Consensus 258 g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~ 337 (582)
T 1flg_A 258 NTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVK 337 (582)
T ss_dssp TEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEE
T ss_pred CEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEE
Confidence 77776653 2 5899999999999888764211 11111221 4674
Q ss_pred EEEEeC--CeEEEEEcCCCeeEEEEecCC-------------CCE--------------------------------EEE
Q 007234 173 MLATAA--GQLKTFNCSDHKKMQKFSGHP-------------GAV--------------------------------RFM 205 (612)
Q Consensus 173 ~l~~~~--g~i~lwd~~~~~~~~~~~~h~-------------~~v--------------------------------~~l 205 (612)
.++.++ |.++++|.++|+.+..+.... .++ ..+
T Consensus 338 ~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~ 417 (582)
T 1flg_A 338 ATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPM 417 (582)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCC
T ss_pred EEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCc
Confidence 666676 899999999999887664331 000 123
Q ss_pred EEeeCCcEEEEEEc--------------------------------CCCeEEEEEcCCCccccceeeEeecCCceeEEeE
Q 007234 206 TFSDNGKYVLSSAV--------------------------------GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCR 253 (612)
Q Consensus 206 ~~sp~~~~l~s~s~--------------------------------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (612)
+++|+...+++... .++.|..||+.+++.. .............
T Consensus 418 a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~-----W~~~~~~~~~~g~ 492 (582)
T 1flg_A 418 AYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVV-----WEHKEHLPLWAGV 492 (582)
T ss_dssp EECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEE-----EEEEESSCCCSCC
T ss_pred eECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEE-----EEecCCCCCcccc
Confidence 55665444444321 2578899999888744 2222211111111
Q ss_pred EecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCC
Q 007234 254 CIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKA 292 (612)
Q Consensus 254 ~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~ 292 (612)
.. ..+..++.++.||.++.||.++|+.+..++.
T Consensus 493 ~~------tagglvf~g~~dg~l~A~D~~tG~~lW~~~~ 525 (582)
T 1flg_A 493 LA------TAGNLVFTGTGDGYFKAFDAKSGKELWKFQT 525 (582)
T ss_dssp EE------ETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred eE------eCCCEEEEECCCCcEEEEECCCCCEEEEecC
Confidence 11 2356778899999999999999999876554
No 248
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.70 E-value=6.2e-06 Score=82.22 Aligned_cols=249 Identities=13% Similarity=0.086 Sum_probs=137.5
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCcccccccccc---ccccccccceeEEEeeecccccccccCCc
Q 007234 11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNR---LEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (612)
Q Consensus 11 ~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~---~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (612)
++++++|+++.++..++.|..||..+++.. .+..... ......... ............+.+.+. +.
T Consensus 24 i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~-~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~---------~g 92 (322)
T 2fp8_A 24 FTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASP-YWNKAFCENSTDAEKRPLCGRTYDISYNLQ---------NN 92 (322)
T ss_dssp EECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCT-TCCHHHHTTCCCGGGHHHHCCEEEEEEETT---------TT
T ss_pred EEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccc-cccccccccccchhccccCCCCceEEEcCC---------CC
Confidence 489999997778888899999998766543 2321100 000000000 000000112234444331 23
Q ss_pred EEEEEECCCcEEEEEcCCCeEEEEe--ccC-CCCCeEEEEEec-CCCEEEEEec-----------------CCcEEEEEC
Q 007234 88 LLVLGTGGGDVLALAVSAGQLKWRL--SDC-HPGGVSAISFAT-HGSCIYSAGA-----------------DGMVCEIDP 146 (612)
Q Consensus 88 ~l~~gs~~g~I~vwd~~~~~~~~~~--~~~-h~~~V~~l~~sp-~~~~l~s~s~-----------------dg~v~iwd~ 146 (612)
.|+++...+.|..+|..++...... ..+ ......++++.+ +|+..++-.. ++.|..||.
T Consensus 93 ~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~ 172 (322)
T 2fp8_A 93 QLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDP 172 (322)
T ss_dssp EEEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEET
T ss_pred cEEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeC
Confidence 4666666666888988766432111 111 123578899999 8976665432 367999998
Q ss_pred CCCceeEEEecCCCCeeEEEECCCCCEEEEeC---CeEEEEEcCCCe--eEEEEecCCCCEEEEEEeeCCcEEEEEEcC-
Q 007234 147 LTGSLLGKFRASTKGISCMAVSSDGKMLATAA---GQLKTFNCSDHK--KMQKFSGHPGAVRFMTFSDNGKYVLSSAVG- 220 (612)
Q Consensus 147 ~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~---g~i~lwd~~~~~--~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~- 220 (612)
.+++....... ......++++|+|+.|+++. +.|+.|++.... ....+....+ ...+++.++|++.++.. .
T Consensus 173 ~~~~~~~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~-~~ 249 (322)
T 2fp8_A 173 STKETTLLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSS-EE 249 (322)
T ss_dssp TTTEEEEEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEE-EE
T ss_pred CCCEEEEeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEec-Cc
Confidence 77764333222 23457899999999776664 799999987521 1122221223 68899999998666653 2
Q ss_pred ---------CCeEEEEEcCCCccccceeeEeecCC--ceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCC
Q 007234 221 ---------ERYIALWRTDGVKKQSASCVLAMEHP--AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN 283 (612)
Q Consensus 221 ---------d~~i~vwd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~ 283 (612)
.+.|..+|.. ++.. ..+..... ...+..+.+ .++++.++....+.|..+++..
T Consensus 250 ~~~~~~~~~~~~v~~~d~~-G~~~---~~~~~~~g~~~~~~~~~~~------~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 250 LDGNMHGRVDPKGIKFDEF-GNIL---EVIPLPPPFAGEHFEQIQE------HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp TTSSTTSCEEEEEEEECTT-SCEE---EEEECCTTTTTSCCCEEEE------ETTEEEEECSSCSEEEEEEC--
T ss_pred ccccccCCCccEEEEECCC-CCEE---EEEECCCCCccccceEEEE------eCCEEEEeecCCCceEEEeccc
Confidence 3557777754 3322 11221111 122333333 3556555555678898888653
No 249
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.68 E-value=1.8e-06 Score=81.72 Aligned_cols=173 Identities=9% Similarity=0.065 Sum_probs=120.9
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEE
Q 007234 12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL 91 (612)
Q Consensus 12 ~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~ 91 (612)
.|+ ++.++.+.+.+|.|+++|+++|+.+..+ -. ... |. ..+.. . ++.+.++
T Consensus 61 ~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~----Fg------------eGit~--~--------g~~Ly~l 111 (268)
T 3nok_A 61 VFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RL-GNI----FA------------EGLAS--D--------GERLYQL 111 (268)
T ss_dssp EEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTC----CE------------EEEEE--C--------SSCEEEE
T ss_pred EEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCc----ce------------eEEEE--e--------CCEEEEE
Confidence 676 3567777888899999999999988766 21 110 00 00111 0 0445555
Q ss_pred EECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCC-----CCeeEEE
Q 007234 92 GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST-----KGISCMA 166 (612)
Q Consensus 92 gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~-----~~v~~l~ 166 (612)
.-.++.+.+||..+.+.+.++... ..-++++ ++++.|+.+..++.|.++|..+.+.+.++.... ..++.+.
T Consensus 112 tw~~~~v~V~D~~Tl~~~~ti~~~--~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe 187 (268)
T 3nok_A 112 TWTEGLLFTWSGMPPQRERTTRYS--GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELE 187 (268)
T ss_dssp ESSSCEEEEEETTTTEEEEEEECS--SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEE
T ss_pred EccCCEEEEEECCcCcEEEEEeCC--CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccE
Confidence 556788999999999999887532 2223444 578888888889999999999999888876532 2456677
Q ss_pred ECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecC-------------CCCEEEEEEeeCCcEEEEEE
Q 007234 167 VSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGH-------------PGAVRFMTFSDNGKYVLSSA 218 (612)
Q Consensus 167 ~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h-------------~~~v~~l~~sp~~~~l~s~s 218 (612)
|. +|++.+..- +.|.+.|.++++.+..+.-. ..-.+.|++.|+++.|+.+|
T Consensus 188 ~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 188 CA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred Ee-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 77 776555543 79999999999998877521 13468899999877666655
No 250
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.65 E-value=1.1e-05 Score=77.29 Aligned_cols=182 Identities=13% Similarity=0.060 Sum_probs=123.0
Q ss_pred EEEEEEC---CCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEe-cCCcEEEEECCCCceeEEEecC-CCCe
Q 007234 88 LLVLGTG---GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPLTGSLLGKFRAS-TKGI 162 (612)
Q Consensus 88 ~l~~gs~---~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s-~dg~v~iwd~~~~~~~~~~~~~-~~~v 162 (612)
.++.++. ++.|.++|+.+++.+..+.-+......++++. ++.|+.+. .++.+.++|..+.+.+.++... ..
T Consensus 33 ~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~-- 108 (266)
T 2iwa_A 33 TLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKD-- 108 (266)
T ss_dssp EEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEEEEEECCSSS--
T ss_pred eEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEEEEEECCCCC--
Confidence 4555543 46799999999999877643222233455554 55665554 6789999999999999998754 22
Q ss_pred eEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCC-----CCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccc
Q 007234 163 SCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHP-----GAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ 235 (612)
Q Consensus 163 ~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~-----~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~ 235 (612)
...+++||+.++++. +.|.++|..+.+.+..+.-.. ..++.+.|. +|. +++....++.|.+.|..+++..
T Consensus 109 -g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~-lyvn~~~~~~V~vID~~tg~V~ 185 (266)
T 2iwa_A 109 -GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGE-VWANIWQTDCIARISAKDGTLL 185 (266)
T ss_dssp -CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE-EEEEETTSSEEEEEETTTCCEE
T ss_pred -eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCE-EEEecCCCCeEEEEECCCCcEE
Confidence 234556787777666 899999999998888775221 236788888 675 4444445789999999998754
Q ss_pred cceeeEeec-----------CCceeEEeEEecCCccCCCCcEEEE-EecCCcEEEEECCCc
Q 007234 236 SASCVLAME-----------HPAVFMDCRCIDNGGVDDAGLYVLA-ISETGVCYIWYGQNI 284 (612)
Q Consensus 236 ~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~l~t-~s~dg~i~iwd~~~~ 284 (612)
. ...+. ........++++ |+++.+++ +...+.+...++...
T Consensus 186 ~---~I~~~g~~~~~~~~~~~~~~v~nGIa~~-----~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 186 G---WILLPNLRKKLIDEGFRDIDVLNGIAWD-----QENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp E---EEECHHHHHHHHHTTCTTCCCEEEEEEE-----TTTTEEEEEETTCSEEEEEEEEEC
T ss_pred E---EEECCCcccccccccccccCceEEEEEc-----CCCCEEEEECCCCCeEEEEEEecc
Confidence 1 22221 112356778887 88765555 456788888886554
No 251
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.63 E-value=4.2e-05 Score=73.76 Aligned_cols=195 Identities=8% Similarity=-0.076 Sum_probs=119.2
Q ss_pred EEEEcCCCCEEEEEe-CCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcE
Q 007234 10 LTSFSPALDYFAICS-GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (612)
Q Consensus 10 ~~~fspdg~~las~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (612)
.++|+|++..|..+. ..+.|.+++..++.....+.... .....+++.+.. +.+
T Consensus 40 gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~------------------~~p~~ia~d~~~--------~~l 93 (267)
T 1npe_A 40 GLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDL------------------GSPEGIALDHLG--------RTI 93 (267)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTC------------------CCEEEEEEETTT--------TEE
T ss_pred EEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCC------------------CCccEEEEEecC--------CeE
Confidence 458999766555544 47899999987654332221100 122334443321 334
Q ss_pred EEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEec---CCcEEEEECCCCceeEEEe-cCCCCeeE
Q 007234 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA---DGMVCEIDPLTGSLLGKFR-ASTKGISC 164 (612)
Q Consensus 89 l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~---dg~v~iwd~~~~~~~~~~~-~~~~~v~~ 164 (612)
.++-..++.|.++++...... .+.........+++++|++..|+.+.. .+.|..+++.. .....+. ........
T Consensus 94 yv~d~~~~~I~~~~~~g~~~~-~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg-~~~~~~~~~~~~~P~g 171 (267)
T 1npe_A 94 FWTDSQLDRIEVAKMDGTQRR-VLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG-TNRRILAQDNLGLPNG 171 (267)
T ss_dssp EEEETTTTEEEEEETTSCSCE-EEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS-CCCEEEECTTCSCEEE
T ss_pred EEEECCCCEEEEEEcCCCCEE-EEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC-CCcEEEEECCCCCCcE
Confidence 444445677999998754332 222222246789999997666666654 36888888753 3333332 23346789
Q ss_pred EEECCCCCEEEEeC---CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccc
Q 007234 165 MAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ 235 (612)
Q Consensus 165 l~~spdg~~l~~~~---g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~ 235 (612)
++++|++..|+.+. +.|..+|.........+.+- .....+++. +..++.+....+.|.++|..+++..
T Consensus 172 ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~-~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~ 242 (267)
T 1npe_A 172 LTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGL-QYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEM 242 (267)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECC-CSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEE
T ss_pred EEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCC-CCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCce
Confidence 99999887776665 79999999765443334432 334566653 4556666556789999999887643
No 252
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.58 E-value=3.8e-05 Score=82.84 Aligned_cols=197 Identities=13% Similarity=0.102 Sum_probs=121.4
Q ss_pred CCEEEEEeC-CCcEEEEEC-CCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEEC
Q 007234 17 LDYFAICSG-DARIKIWDT-LKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG 94 (612)
Q Consensus 17 g~~las~s~-dg~i~iwd~-~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~ 94 (612)
+..+..++. ++.|.-+|. .+|+.+.++........ .... .+....... ..+ +..+++++.
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~---~~~~-~~~~~~~~~--~~~------------~~~v~v~~~ 123 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDAST---KAVM-CCDVVDRGL--AYG------------AGQIVKKQA 123 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGG---GGGC-TTCSCCCCC--EEE------------TTEEEEECT
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccc---cccc-ccccccccc--EEE------------CCEEEEEeC
Confidence 345666666 889999999 99999988753321100 0000 000000000 000 567889999
Q ss_pred CCcEEEEEcCCCeEEEEeccCC-C--CCeEE-EEEecCCCEEEEEec------CCcEEEEECCCCceeEEEecCCCC---
Q 007234 95 GGDVLALAVSAGQLKWRLSDCH-P--GGVSA-ISFATHGSCIYSAGA------DGMVCEIDPLTGSLLGKFRASTKG--- 161 (612)
Q Consensus 95 ~g~I~vwd~~~~~~~~~~~~~h-~--~~V~~-l~~sp~~~~l~s~s~------dg~v~iwd~~~~~~~~~~~~~~~~--- 161 (612)
+|.|..+|..+|+.+++..... . ..+.+ .... ++ .++.++. ++.|..+|..+|+.+-++......
T Consensus 124 dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~ 201 (571)
T 2ad6_A 124 NGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-KD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSV 201 (571)
T ss_dssp TSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHH
T ss_pred CCEEEEEECCCCCEEEEecCCCCCccceeccCCEEE-CC-EEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCcccc
Confidence 9999999999999998764221 0 01211 1111 34 5666654 799999999999988877643211
Q ss_pred -----------------------------------eeEEEECCCCCEEEEeCC------------------eEEEEEcCC
Q 007234 162 -----------------------------------ISCMAVSSDGKMLATAAG------------------QLKTFNCSD 188 (612)
Q Consensus 162 -----------------------------------v~~l~~spdg~~l~~~~g------------------~i~lwd~~~ 188 (612)
...+++.++...++.+.+ .|..+|.++
T Consensus 202 ~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~t 281 (571)
T 2ad6_A 202 RLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDT 281 (571)
T ss_dssp TBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTT
T ss_pred ccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCC
Confidence 023566776666665542 599999999
Q ss_pred CeeEEEEecC----------CCCEEEEEEeeCCc---EEEEEEcCCCeEEEEEcCCCccc
Q 007234 189 HKKMQKFSGH----------PGAVRFMTFSDNGK---YVLSSAVGERYIALWRTDGVKKQ 235 (612)
Q Consensus 189 ~~~~~~~~~h----------~~~v~~l~~sp~~~---~l~s~s~~d~~i~vwd~~~~~~~ 235 (612)
++.+..++.. ..++. +...++|+ .++.++ .+|.+.++|..+++..
T Consensus 282 G~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~-~~G~l~~lD~~tG~~~ 339 (571)
T 2ad6_A 282 GMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHID-RNGILYTLNRENGNLI 339 (571)
T ss_dssp CCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEEC-TTSEEEEEETTTCCEE
T ss_pred CcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeC-CCcEEEEEECCCCCEE
Confidence 9988777532 12222 22335775 445554 7899999999988754
No 253
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.55 E-value=1.6e-05 Score=74.47 Aligned_cols=170 Identities=12% Similarity=0.003 Sum_probs=108.3
Q ss_pred EEEEeccCCCCCeEEEEEecCCCEEEEEecC--CcEEEEECCCCceeEEEecCCCC-eeEEEECCCCCEEEEeC---CeE
Q 007234 108 LKWRLSDCHPGGVSAISFATHGSCIYSAGAD--GMVCEIDPLTGSLLGKFRASTKG-ISCMAVSSDGKMLATAA---GQL 181 (612)
Q Consensus 108 ~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~d--g~v~iwd~~~~~~~~~~~~~~~~-v~~l~~spdg~~l~~~~---g~i 181 (612)
.+.++......-..++.|++ +.++.+.+.+ ..|+.+|+.+++.+..+...... -..+++ ++..|.... +.+
T Consensus 11 v~~~~phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~--~~~~ly~ltw~~~~v 87 (243)
T 3mbr_X 11 VVKRYPHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVA--WRDRLIQLTWRNHEG 87 (243)
T ss_dssp EEEEEECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEE--ETTEEEEEESSSSEE
T ss_pred EEEEcCCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEE--eCCEEEEEEeeCCEE
Confidence 34444322335578999986 5555666665 48999999999999988754332 133444 355555544 899
Q ss_pred EEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccC
Q 007234 182 KTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVD 261 (612)
Q Consensus 182 ~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (612)
.+||.++.+.+.+++.... ...+++++..|+.+. .++.|.++|..+.+......+.....+...+.-+.+
T Consensus 88 ~v~D~~tl~~~~ti~~~~~---Gwglt~dg~~L~vSd-gs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~------ 157 (243)
T 3mbr_X 88 FVYDLATLTPRARFRYPGE---GWALTSDDSHLYMSD-GTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEW------ 157 (243)
T ss_dssp EEEETTTTEEEEEEECSSC---CCEEEECSSCEEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEE------
T ss_pred EEEECCcCcEEEEEeCCCC---ceEEeeCCCEEEEEC-CCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEE------
Confidence 9999999999999974332 234457777777765 688999999988765421111110011112233333
Q ss_pred CCCcEEEEEecCCcEEEEECCCcceeccc
Q 007234 262 DAGLYVLAISETGVCYIWYGQNIEELRNT 290 (612)
Q Consensus 262 ~~~~~l~t~s~dg~i~iwd~~~~~~~~~~ 290 (612)
.+|+..+..-.+..|.+.|..+++.+..+
T Consensus 158 ~~G~lyanvw~s~~I~vIDp~tG~V~~~i 186 (243)
T 3mbr_X 158 VNGELLANVWLTSRIARIDPASGKVVAWI 186 (243)
T ss_dssp ETTEEEEEETTTTEEEEECTTTCBEEEEE
T ss_pred eCCEEEEEECCCCeEEEEECCCCCEEEEE
Confidence 35665544446789999999999886543
No 254
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.54 E-value=0.00018 Score=71.29 Aligned_cols=230 Identities=7% Similarity=-0.054 Sum_probs=135.8
Q ss_pred EEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEECCCcEE
Q 007234 20 FAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVL 99 (612)
Q Consensus 20 las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~ 99 (612)
|+.+. .+.|+..|+.+.+....+.. ......+.|.+.+ +.++++-..++.|.
T Consensus 4 ll~~~-~~~I~~i~~~~~~~~~~~~~-------------------~~~p~g~~~d~~~--------~~ly~~D~~~~~I~ 55 (316)
T 1ijq_A 4 LFFTN-RHEVRKMTLDRSEYTSLIPN-------------------LRNVVALDTEVAS--------NRIYWSDLSQRMIC 55 (316)
T ss_dssp EEEEC-BSSEEEEETTSCCCEEEECS-------------------CSSEEEEEEETTT--------TEEEEEETTTTEEE
T ss_pred EEEEC-CCeEEEEECCCcceEehhcC-------------------CCceEEEEEEeCC--------CEEEEEECCCCcEE
Confidence 43333 35688999987765544321 1123455665442 34445555567799
Q ss_pred EEEcCC---CeEEEEeccCCCCCeEEEEEecCCCEEE-EEecCCcEEEEECCCCceeEEEecCCCCeeEEEECCCCCEEE
Q 007234 100 ALAVSA---GQLKWRLSDCHPGGVSAISFATHGSCIY-SAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLA 175 (612)
Q Consensus 100 vwd~~~---~~~~~~~~~~h~~~V~~l~~sp~~~~l~-s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~ 175 (612)
.+++.. +.....+....-....++++.+.+..|+ +-...+.|.++|+........+.........++++|.+..|+
T Consensus 56 ~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly 135 (316)
T 1ijq_A 56 STQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMY 135 (316)
T ss_dssp EEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEE
T ss_pred EEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEE
Confidence 999876 1222222222224568999987555554 445678999999865443333443445779999999766655
Q ss_pred EeC----CeEEEEEcCCCeeEEEE-ecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeE
Q 007234 176 TAA----GQLKTFNCSDHKKMQKF-SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFM 250 (612)
Q Consensus 176 ~~~----g~i~lwd~~~~~~~~~~-~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 250 (612)
.+. +.|..+++... ....+ ...-.....++++|++..|+.+....+.|..+|++..... .+..........
T Consensus 136 ~~d~~~~~~I~~~~~dG~-~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~---~~~~~~~~~~~P 211 (316)
T 1ijq_A 136 WTDWGTPAKIKKGGLNGV-DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK---TILEDEKRLAHP 211 (316)
T ss_dssp EEECSSSCEEEEEETTSC-CEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE---EEEECTTTTSSE
T ss_pred EEccCCCCeEEEEcCCCC-CeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceE---EEeecCCccCCc
Confidence 543 57888887543 33333 2334567899999988777777666779999998754322 222211111122
Q ss_pred EeEEecCCccCCCCcEEEEEecCCcEEEEECCCccee
Q 007234 251 DCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL 287 (612)
Q Consensus 251 ~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~ 287 (612)
..+++. ++...++-...+.|..++..+++.+
T Consensus 212 ~giav~------~~~ly~~d~~~~~V~~~~~~~g~~~ 242 (316)
T 1ijq_A 212 FSLAVF------EDKVFWTDIINEAIFSANRLTGSDV 242 (316)
T ss_dssp EEEEEE------TTEEEEEETTTTEEEEEETTTCCCC
T ss_pred EEEEEE------CCEEEEEECCCCeEEEEeCCCCcce
Confidence 333442 3455666666789999997777544
No 255
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.46 E-value=6.1e-06 Score=78.04 Aligned_cols=161 Identities=12% Similarity=0.081 Sum_probs=106.4
Q ss_pred CCeEEEEEecCCCEEEEEecCC--cEEEEECCCCceeEEEecCCCCeeEEEECCCCCEEEEeC---CeEEEEEcCCCeeE
Q 007234 118 GGVSAISFATHGSCIYSAGADG--MVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKKM 192 (612)
Q Consensus 118 ~~V~~l~~sp~~~~l~s~s~dg--~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~---g~i~lwd~~~~~~~ 192 (612)
.-..++.|+ ++.++.+++.+| .|+.+|+.+++.+..+..... .....+.+++..|.... +.+.+||.++.+.+
T Consensus 43 ~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~-~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~ 120 (262)
T 3nol_A 43 AFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKR-YFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQV 120 (262)
T ss_dssp CEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTT-CCEEEEEEETTEEEEEESSSSEEEEEETTTCCEE
T ss_pred cccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCc-cceeEEEEeCCEEEEEEeeCCEEEEEECccCcEE
Confidence 345899998 676666777766 899999999999998875433 33333333455555554 89999999999999
Q ss_pred EEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEec
Q 007234 193 QKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE 272 (612)
Q Consensus 193 ~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~ 272 (612)
.+++-.. ....++++++.|+.+. .++.|.++|..+.+......+.....+...+.-+.+ .+|+..+..-.
T Consensus 121 ~ti~~~~---eG~glt~dg~~L~~Sd-Gs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~------~~G~lyan~w~ 190 (262)
T 3nol_A 121 RSFNYDG---EGWGLTHNDQYLIMSD-GTPVLRFLDPESLTPVRTITVTAHGEELPELNELEW------VDGEIFANVWQ 190 (262)
T ss_dssp EEEECSS---CCCCEEECSSCEEECC-SSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEE------ETTEEEEEETT
T ss_pred EEEECCC---CceEEecCCCEEEEEC-CCCeEEEEcCCCCeEEEEEEeccCCccccccceeEE------ECCEEEEEEcc
Confidence 9997432 2234557788777765 578899999988765421111110111122223444 25655544446
Q ss_pred CCcEEEEECCCcceeccc
Q 007234 273 TGVCYIWYGQNIEELRNT 290 (612)
Q Consensus 273 dg~i~iwd~~~~~~~~~~ 290 (612)
++.|.+.|.++++.+..+
T Consensus 191 ~~~I~vIDp~tG~V~~~I 208 (262)
T 3nol_A 191 TNKIVRIDPETGKVTGII 208 (262)
T ss_dssp SSEEEEECTTTCBEEEEE
T ss_pred CCeEEEEECCCCcEEEEE
Confidence 889999999999887644
No 256
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.46 E-value=5.7e-05 Score=74.58 Aligned_cols=225 Identities=12% Similarity=0.043 Sum_probs=123.9
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEE
Q 007234 10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (612)
Q Consensus 10 ~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (612)
.++|+|+|+++++-..+++|..||..+ .....+.. .. ....+.+.+. ++++
T Consensus 36 gia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~~-~~------------------~p~gia~~~d---------G~l~ 86 (306)
T 2p4o_A 36 NLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHATV-EG------------------KVSGLAFTSN---------GDLV 86 (306)
T ss_dssp EEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEEC-SS------------------EEEEEEECTT---------SCEE
T ss_pred eEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEeC-CC------------------CceeEEEcCC---------CcEE
Confidence 348999999777766788999999865 33333321 11 1223333322 5554
Q ss_pred EEEECCC--cEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCce-eEEEe---------c
Q 007234 90 VLGTGGG--DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL-LGKFR---------A 157 (612)
Q Consensus 90 ~~gs~~g--~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~-~~~~~---------~ 157 (612)
++....+ .|..++..+++...............++..+++..+++-..++.|+.+|...++. +.... .
T Consensus 87 vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~ 166 (306)
T 2p4o_A 87 ATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSES 166 (306)
T ss_dssp EEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTC
T ss_pred EEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccC
Confidence 4443332 3777788887754222112223345666655554444444688999999876532 21111 0
Q ss_pred CCCCeeEEEECCCCCEEEEeC---CeEEEEEcCC-Cee--EEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCC
Q 007234 158 STKGISCMAVSSDGKMLATAA---GQLKTFNCSD-HKK--MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (612)
Q Consensus 158 ~~~~v~~l~~spdg~~l~~~~---g~i~lwd~~~-~~~--~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~ 231 (612)
.-.....+ +|+++.|+++. +.|+.||+.. ++. ...+.. ......+++.++|+++++.. ..+.|.+++..
T Consensus 167 ~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~-~~~~V~~~~~~- 241 (306)
T 2p4o_A 167 VFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATH-IYNSVVRIAPD- 241 (306)
T ss_dssp CSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECB-TTCCEEEECTT-
T ss_pred CCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeC-CCCeEEEECCC-
Confidence 11234555 88888777665 7999999875 321 122211 12345689999998655543 57789999865
Q ss_pred CccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecC
Q 007234 232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET 273 (612)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~d 273 (612)
++.. .+.....+......++|... .+++..|++++..
T Consensus 242 G~~~---~~~~~~~~~~~p~~~a~~g~--~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 242 RSTT---IIAQAEQGVIGSTAVAFGQT--EGDCTAIYVVTNG 278 (306)
T ss_dssp CCEE---EEECGGGTCTTEEEEEECCS--TTTTTEEEEEECT
T ss_pred CCEE---EEeecccccCCceEEEEecc--cCCCCEEEEECCC
Confidence 3321 11122222233455666410 0466666665554
No 257
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.45 E-value=6.7e-06 Score=77.73 Aligned_cols=170 Identities=12% Similarity=0.037 Sum_probs=109.1
Q ss_pred EEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCC-CeeEEEECCCCCEEEEeC---CeEEE
Q 007234 108 LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK-GISCMAVSSDGKMLATAA---GQLKT 183 (612)
Q Consensus 108 ~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~-~v~~l~~spdg~~l~~~~---g~i~l 183 (612)
.+.++...-..-..++.|+ ++.++.+.+.+|.|+.+|+.+++.+..+ .... .-..+++. +..|.... +.+.+
T Consensus 45 Vv~~~phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~--g~~Ly~ltw~~~~v~V 120 (268)
T 3nok_A 45 IIREYPHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASD--GERLYQLTWTEGLLFT 120 (268)
T ss_dssp EEEEEECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEEC--SSCEEEEESSSCEEEE
T ss_pred EEEEEcCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEe--CCEEEEEEccCCEEEE
Confidence 3444432223445899997 3566777788899999999999988887 3332 22345554 44444433 89999
Q ss_pred EEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCC
Q 007234 184 FNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDA 263 (612)
Q Consensus 184 wd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (612)
||.++.+.+.+++-... ...++++++.|+.+. .++.|.++|..+.+......+..-..+...+.-+.+ .+
T Consensus 121 ~D~~Tl~~~~ti~~~~e---GwGLt~Dg~~L~vSd-Gs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~------~d 190 (268)
T 3nok_A 121 WSGMPPQRERTTRYSGE---GWGLCYWNGKLVRSD-GGTMLTFHEPDGFALVGAVQVKLRGQPVELINELEC------AN 190 (268)
T ss_dssp EETTTTEEEEEEECSSC---CCCEEEETTEEEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEE------ET
T ss_pred EECCcCcEEEEEeCCCc---eeEEecCCCEEEEEC-CCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEE------eC
Confidence 99999999999974322 234446788888775 688999999988775421111111111112233444 35
Q ss_pred CcEEEEEecCCcEEEEECCCcceecccC
Q 007234 264 GLYVLAISETGVCYIWYGQNIEELRNTK 291 (612)
Q Consensus 264 ~~~l~t~s~dg~i~iwd~~~~~~~~~~~ 291 (612)
|+..+..-.++.|.+-|.++++.+..+.
T Consensus 191 G~lyanvw~s~~I~vIDp~TG~V~~~Id 218 (268)
T 3nok_A 191 GVIYANIWHSSDVLEIDPATGTVVGVID 218 (268)
T ss_dssp TEEEEEETTCSEEEEECTTTCBEEEEEE
T ss_pred CEEEEEECCCCeEEEEeCCCCcEEEEEE
Confidence 6555444467899999999998876443
No 258
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.39 E-value=9.6e-05 Score=79.80 Aligned_cols=196 Identities=12% Similarity=0.130 Sum_probs=118.3
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEECCCc
Q 007234 18 DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGD 97 (612)
Q Consensus 18 ~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~ 97 (612)
..+..++.++.|.-+|..+|+.+.++..........+ +....... ..+ +..+++++.++.
T Consensus 69 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~------~~~~~~g~--a~~------------~~~v~~~t~dg~ 128 (582)
T 1flg_A 69 GVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPC------CDVVNRGA--AIY------------GDKVFFGTLDAS 128 (582)
T ss_dssp TEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCS------SCSCCCCC--EEE------------TTEEEEEETTTE
T ss_pred CEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccc------cccCCCcc--EEE------------CCEEEEEeCCCE
Confidence 3455556544599999999999988864332110000 00000000 001 567889999999
Q ss_pred EEEEEcCCCeEEEEeccCCC---CCeE-EEEEec---CCC-EEEEEe------cCCcEEEEECCCCceeEEEecCCCC--
Q 007234 98 VLALAVSAGQLKWRLSDCHP---GGVS-AISFAT---HGS-CIYSAG------ADGMVCEIDPLTGSLLGKFRASTKG-- 161 (612)
Q Consensus 98 I~vwd~~~~~~~~~~~~~h~---~~V~-~l~~sp---~~~-~l~s~s------~dg~v~iwd~~~~~~~~~~~~~~~~-- 161 (612)
|..+|..+|+.+++...... ..+. ...+.. +|+ .+++++ .++.|+.+|..+|+.+-........
T Consensus 129 l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~ 208 (582)
T 1flg_A 129 VVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMG 208 (582)
T ss_dssp EEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEE
T ss_pred EEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccc
Confidence 99999999999987643210 0111 111121 233 566654 3789999999999987765432100
Q ss_pred ---------------------------------------eeEEEECCCCCEEEEeC------------------------
Q 007234 162 ---------------------------------------ISCMAVSSDGKMLATAA------------------------ 178 (612)
Q Consensus 162 ---------------------------------------v~~l~~spdg~~l~~~~------------------------ 178 (612)
-..++++|+..+++.+.
T Consensus 209 p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~ 288 (582)
T 1flg_A 209 RLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSL 288 (582)
T ss_dssp EETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCT
T ss_pred cccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCc
Confidence 02356667666666443
Q ss_pred --CeEEEEEcCCCeeEEEEec--CC--------CCEEEEEEe-eCCc---EEEEEEcCCCeEEEEEcCCCccc
Q 007234 179 --GQLKTFNCSDHKKMQKFSG--HP--------GAVRFMTFS-DNGK---YVLSSAVGERYIALWRTDGVKKQ 235 (612)
Q Consensus 179 --g~i~lwd~~~~~~~~~~~~--h~--------~~v~~l~~s-p~~~---~l~s~s~~d~~i~vwd~~~~~~~ 235 (612)
+.|..+|.++|+.+-.++. |. .++. +... .+|+ .++.++ .+|.++++|..+++..
T Consensus 289 ~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~-~~G~l~~lD~~tG~~l 359 (582)
T 1flg_A 289 YTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHAD-RNGFFYVVDRSNGKLQ 359 (582)
T ss_dssp TCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEEC-TTSEEEEEETTTCCEE
T ss_pred ccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEEC-CCceEEEEECCCCCEe
Confidence 4799999999999887753 32 1221 1221 4674 555555 7999999999988754
No 259
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.38 E-value=0.00027 Score=72.26 Aligned_cols=224 Identities=6% Similarity=-0.073 Sum_probs=135.3
Q ss_pred CCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEECCCcEEEEEcCC
Q 007234 26 DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSA 105 (612)
Q Consensus 26 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~ 105 (612)
.+.|+.+++..+........ ......+.|.+.+ +.++++-...+.|..+++..
T Consensus 95 ~~~I~~i~~~~~~~~~~~~~-------------------~~~~~gl~~d~~~--------~~ly~~D~~~~~I~r~~~~g 147 (386)
T 3v65_B 95 RIDIRQVLPHRSEYTLLLNN-------------------LENAIALDFHHRR--------ELVFWSDVTLDRILRANLNG 147 (386)
T ss_dssp BSCEEEECTTSCCCEEEECS-------------------CSCEEEEEEETTT--------TEEEEEETTTTEEEEEETTS
T ss_pred CccceeeccCCCcEEEEecC-------------------CCccEEEEEecCC--------CeEEEEeCCCCcEEEEecCC
Confidence 45677778766554333221 1124456666543 44455555667799999987
Q ss_pred CeEEEEeccCCCCCeEEEEEecCCCEEE-EEecCCcEEEEECCCCceeEEEecCCCCeeEEEECCCCCEEEEeC----Ce
Q 007234 106 GQLKWRLSDCHPGGVSAISFATHGSCIY-SAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA----GQ 180 (612)
Q Consensus 106 ~~~~~~~~~~h~~~V~~l~~sp~~~~l~-s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~----g~ 180 (612)
+.....+ ........++++.+.+..|+ +-...+.|.+.++........+.........++++|.+..|+.+. +.
T Consensus 148 ~~~~~~~-~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~ 226 (386)
T 3v65_B 148 SNVEEVV-STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPR 226 (386)
T ss_dssp CCEEEEE-CSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCE
T ss_pred CCcEEEE-eCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCE
Confidence 6544333 22234567899998655554 445567899988765443333443445679999999777766654 57
Q ss_pred EEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCcc
Q 007234 181 LKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGV 260 (612)
Q Consensus 181 i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (612)
|+.+++............-.....|+|+|++..|+.+....+.|..+++...... .+.. .. ......+++.
T Consensus 227 I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~---~~~~-~~-~~~P~giav~---- 297 (386)
T 3v65_B 227 IEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRK---AVIS-QG-LPHPFAITVF---- 297 (386)
T ss_dssp EEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCE---EEEC-SS-CSSEEEEEEE----
T ss_pred EEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeE---EEEE-CC-CCCceEEEEE----
Confidence 8888886543333333334457899999887777777666788999998754322 1111 11 1112233332
Q ss_pred CCCCcEEEEEecCCcEEEEECCCcceec
Q 007234 261 DDAGLYVLAISETGVCYIWYGQNIEELR 288 (612)
Q Consensus 261 ~~~~~~l~t~s~dg~i~iwd~~~~~~~~ 288 (612)
++..+++-...+.|..++..+++.+.
T Consensus 298 --~~~ly~td~~~~~V~~~~~~~G~~~~ 323 (386)
T 3v65_B 298 --EDSLYWTDWHTKSINSANKFTGKNQE 323 (386)
T ss_dssp --TTEEEEEETTTTEEEEEETTTCCSCE
T ss_pred --CCEEEEeeCCCCeEEEEECCCCcceE
Confidence 34555666667889888866665443
No 260
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.35 E-value=0.00068 Score=69.52 Aligned_cols=232 Identities=7% Similarity=-0.043 Sum_probs=138.1
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEECCCcE
Q 007234 19 YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDV 98 (612)
Q Consensus 19 ~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I 98 (612)
+|..+. .+.|+..++........... ......+.|.+.+ +.++++-...+.|
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~~~~~-------------------~~~~~~l~~d~~~--------~~lywsD~~~~~I 136 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTSLIPN-------------------LRNVVALDTEVAS--------NRIYWSDLSQRMI 136 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEEEECS-------------------CSCEEEEEEETTT--------TEEEEEETTTTEE
T ss_pred eeEEec-cceeEEEccCCcceeEeccc-------------------cCcceEEeeeecc--------CceEEEecCCCeE
Confidence 444443 46788888876654433321 1233456666543 3344444456778
Q ss_pred EEEEcCCCe---EEEEeccCCCCCeEEEEEecCCCEE-EEEecCCcEEEEECCCCceeEEEecCCCCeeEEEECCCCCEE
Q 007234 99 LALAVSAGQ---LKWRLSDCHPGGVSAISFATHGSCI-YSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKML 174 (612)
Q Consensus 99 ~vwd~~~~~---~~~~~~~~h~~~V~~l~~sp~~~~l-~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l 174 (612)
..+++.... ....+.........++++.+.+..| ++-...+.|.+.++........+...-.....|+++|.+..|
T Consensus 137 ~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~l 216 (400)
T 3p5b_L 137 CSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFM 216 (400)
T ss_dssp EEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEE
T ss_pred EEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeE
Confidence 888887522 1112223234567899999854444 454567889999987655444444444568999999976666
Q ss_pred EEeC----CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecC-Ccee
Q 007234 175 ATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEH-PAVF 249 (612)
Q Consensus 175 ~~~~----g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~-~~~~ 249 (612)
+.+. +.|...++........+...-.....|++++++..|+.+....+.|..+|++..... .+..... ....
T Consensus 217 y~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~---~~~~~~~~l~~P 293 (400)
T 3p5b_L 217 YWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK---TILEDEKRLAHP 293 (400)
T ss_dssp EEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCE---EEEECSSTTSSE
T ss_pred EEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccE---EEEeCCCCCCCC
Confidence 6554 578888886544333333334567899999988888877656788999998765432 1222111 1122
Q ss_pred EEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceec
Q 007234 250 MDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR 288 (612)
Q Consensus 250 ~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~ 288 (612)
. .+.+. ++..+++-...+.|..+|..+|+.+.
T Consensus 294 ~-gl~v~------~~~lywtd~~~~~V~~~~~~~G~~~~ 325 (400)
T 3p5b_L 294 F-SLAVF------EDKVFWTDIINEAIFSANRLTGSDVN 325 (400)
T ss_dssp E-EEEEE------TTEEEEEESSSCSEEEEESSSCCCCE
T ss_pred E-EEEEe------CCEEEEecCCCCeEEEEEcCCCCceE
Confidence 2 22232 34555666667889999977776544
No 261
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.34 E-value=0.00046 Score=69.43 Aligned_cols=200 Identities=6% Similarity=-0.084 Sum_probs=121.6
Q ss_pred eeEEEeeecccccccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEE-EEEecCCcEEEEEC
Q 007234 68 YTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCI-YSAGADGMVCEIDP 146 (612)
Q Consensus 68 ~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l-~s~s~dg~v~iwd~ 146 (612)
...+.|.+.+ +.++++-...+.|..+++..+.....+ ........++++.+.+..| ++-...+.|.+.++
T Consensus 75 ~~~l~~d~~~--------~~ly~~D~~~~~I~r~~~~g~~~~~~~-~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~ 145 (349)
T 3v64_C 75 AIALDFHHRR--------ELVFWSDVTLDRILRANLNGSNVEEVV-STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANL 145 (349)
T ss_dssp EEEEEEETTT--------TEEEEEETTTTEEEEEETTSCSCEEEE-CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred eEEEEEeccc--------cEEEEEeccCCceEEEecCCCCceEEE-eCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcC
Confidence 4456666543 444445556677999998876543322 2223456789999855555 45556788999998
Q ss_pred CCCceeEEEecCCCCeeEEEECCCCCEEEEeC----CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCC
Q 007234 147 LTGSLLGKFRASTKGISCMAVSSDGKMLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER 222 (612)
Q Consensus 147 ~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~----g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~ 222 (612)
........+...-.....++++|.+..|+.+. +.|..+++........+...-.....++++|++..|+.+....+
T Consensus 146 dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~ 225 (349)
T 3v64_C 146 DGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHH 225 (349)
T ss_dssp TSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred CCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCC
Confidence 65443333333345679999999776666554 56888887654322222223345789999998777777766678
Q ss_pred eEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCccee
Q 007234 223 YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL 287 (612)
Q Consensus 223 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~ 287 (612)
.|..++++..... .+.. ........+++. ++...++-...+.|..++..+|+.+
T Consensus 226 ~I~~~~~dG~~~~---~~~~--~~~~~P~giav~------~~~ly~td~~~~~V~~~~~~~G~~~ 279 (349)
T 3v64_C 226 VIERANLDGSHRK---AVIS--QGLPHPFAITVF------EDSLYWTDWHTKSINSANKFTGKNQ 279 (349)
T ss_dssp EEEEEETTSCSCE---EEEC--SSCSSEEEEEEE------TTEEEEEETTTTEEEEEETTTCCSC
T ss_pred EEEEEeCCCCceE---EEEe--CCCCCceEEEEE------CCEEEEecCCCCeEEEEEccCCCcc
Confidence 8999998764322 1111 111112233332 3455555556778888886666544
No 262
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.34 E-value=7.9e-05 Score=83.36 Aligned_cols=190 Identities=11% Similarity=0.030 Sum_probs=106.7
Q ss_pred EEEEc-CCCCEEEEEeC-CC----cEEEEECCCC-cEEEE-eeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234 10 LTSFS-PALDYFAICSG-DA----RIKIWDTLKG-QVQTE-FADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (612)
Q Consensus 10 ~~~fs-pdg~~las~s~-dg----~i~iwd~~~~-~~~~~-~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (612)
..+|| |||++||.+.. +| +|+++|+.+| +.+.. +. .......|.+.
T Consensus 178 ~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---------------------~~~~~~~WspD----- 231 (751)
T 2xe4_A 178 EVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---------------------GTNGEIVWGPD----- 231 (751)
T ss_dssp EEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---------------------EECSCCEECSS-----
T ss_pred eeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---------------------CceeeEEEecC-----
Confidence 45999 99999986643 33 4999999988 63210 10 01223445543
Q ss_pred cccCCcEEEEEECC-----CcEEEEEcCCCeE--EEEeccCCCCCeEEEEEecCCCEEEEEec---CCcEEEEECCCCc-
Q 007234 82 RKLGSSLLVLGTGG-----GDVLALAVSAGQL--KWRLSDCHPGGVSAISFATHGSCIYSAGA---DGMVCEIDPLTGS- 150 (612)
Q Consensus 82 ~~~~~~~l~~gs~~-----g~I~vwd~~~~~~--~~~~~~~h~~~V~~l~~sp~~~~l~s~s~---dg~v~iwd~~~~~- 150 (612)
++.|+....+ ..|+++++.++.. ...+.........++.|+|||++|+..+. ...|+++|+.++.
T Consensus 232 ----g~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~ 307 (751)
T 2xe4_A 232 ----HTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNA 307 (751)
T ss_dssp ----TTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTT
T ss_pred ----CCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCC
Confidence 4445555543 2488888887642 11221223345678899999998776553 3468888988752
Q ss_pred ee--EEEe-cCCCCeeEEEECCCCCEEEEeC------CeEEEEEcCCCeeEEE-EecCCCCEEEEEEeeCCcEEEEEEcC
Q 007234 151 LL--GKFR-ASTKGISCMAVSSDGKMLATAA------GQLKTFNCSDHKKMQK-FSGHPGAVRFMTFSDNGKYVLSSAVG 220 (612)
Q Consensus 151 ~~--~~~~-~~~~~v~~l~~spdg~~l~~~~------g~i~lwd~~~~~~~~~-~~~h~~~v~~l~~sp~~~~l~s~s~~ 220 (612)
.. ..+. .......++.|+.++.+++... ..|..+|+.++..... +..|...+.--.+++.+..++.....
T Consensus 308 ~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~ 387 (751)
T 2xe4_A 308 HNTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVRSNYLVVAGRR 387 (751)
T ss_dssp CCCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEECSSEEEEEEEE
T ss_pred CceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEECCEEEEEEEe
Confidence 22 3332 2334556666554444444433 3788888875322222 33344433323345556666665556
Q ss_pred CCeEE--EEEc
Q 007234 221 ERYIA--LWRT 229 (612)
Q Consensus 221 d~~i~--vwd~ 229 (612)
++..+ ++++
T Consensus 388 ~g~~~l~~~dl 398 (751)
T 2xe4_A 388 AGLTRIWTMMA 398 (751)
T ss_dssp TTEEEEEEEEC
T ss_pred CCEEEEEEEec
Confidence 77544 4554
No 263
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.33 E-value=0.00023 Score=76.85 Aligned_cols=203 Identities=10% Similarity=0.074 Sum_probs=122.1
Q ss_pred CCEEEEEeC-CCcEEEEEC-CCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEEC
Q 007234 17 LDYFAICSG-DARIKIWDT-LKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG 94 (612)
Q Consensus 17 g~~las~s~-dg~i~iwd~-~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~ 94 (612)
+..+..++. ++.|.-+|. .+|+.+..+............. +..... .....+.+.. ....|++++.
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~----~~~~~~---g~av~p~~g~-----~~~rV~v~t~ 129 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVAC----CDLVNR---GLAYWPGDGK-----TPALILKTQL 129 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCS----SCSCCC---CCEEECCCSS-----SCCEEEEECT
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCcccccccc----cccccc---ceEEEecCCc-----ceeEEEEEcC
Confidence 345666776 889999999 9999998886432210000000 000000 0011001000 0234888999
Q ss_pred CCcEEEEEcCCCeEEEEeccCCC---CCeEE-EEEecCCCEEEEEe------cCCcEEEEECCCCceeEEEecCCCC---
Q 007234 95 GGDVLALAVSAGQLKWRLSDCHP---GGVSA-ISFATHGSCIYSAG------ADGMVCEIDPLTGSLLGKFRASTKG--- 161 (612)
Q Consensus 95 ~g~I~vwd~~~~~~~~~~~~~h~---~~V~~-l~~sp~~~~l~s~s------~dg~v~iwd~~~~~~~~~~~~~~~~--- 161 (612)
++.|..+|..+|+.+++...... ..+++ ..+. ++ .++.++ .++.|+.+|.++|+.+-.+......
T Consensus 130 dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~ 207 (599)
T 1w6s_A 130 DGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDL 207 (599)
T ss_dssp TSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHH
T ss_pred CCEEEEEECCCCCEEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccc
Confidence 99999999999999887642210 01211 1111 34 555554 3899999999999988776643211
Q ss_pred ----------------------------------e-eEEEECCCCCEEEEeC--C----------------eEEEEEcCC
Q 007234 162 ----------------------------------I-SCMAVSSDGKMLATAA--G----------------QLKTFNCSD 188 (612)
Q Consensus 162 ----------------------------------v-~~l~~spdg~~l~~~~--g----------------~i~lwd~~~ 188 (612)
+ ..+++.++..+++.+. + .|..+|.++
T Consensus 208 ~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~T 287 (599)
T 1w6s_A 208 LLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADT 287 (599)
T ss_dssp TBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTT
T ss_pred ccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCC
Confidence 0 1356667777777665 2 799999999
Q ss_pred CeeEEEEecCC----------CCEEEEEEe-eCC---cEEEEEEcCCCeEEEEEcCCCccc
Q 007234 189 HKKMQKFSGHP----------GAVRFMTFS-DNG---KYVLSSAVGERYIALWRTDGVKKQ 235 (612)
Q Consensus 189 ~~~~~~~~~h~----------~~v~~l~~s-p~~---~~l~s~s~~d~~i~vwd~~~~~~~ 235 (612)
|+.+-.++... .++. +... .+| +.++.++ .+|.+.++|..+++..
T Consensus 288 G~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~-~~G~l~~lD~~tG~~l 346 (599)
T 1w6s_A 288 GEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPD-RNGIVYTLDRTDGALV 346 (599)
T ss_dssp CCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEEC-TTSEEEEEETTTCCEE
T ss_pred CceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEEC-CCcEEEEEECCCCCEe
Confidence 99987775432 2222 2222 467 3455554 7999999999988754
No 264
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.25 E-value=0.0008 Score=66.61 Aligned_cols=202 Identities=6% Similarity=-0.043 Sum_probs=122.3
Q ss_pred eeEEEeeecccccccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEE-EEEecCCcEEEEEC
Q 007234 68 YTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCI-YSAGADGMVCEIDP 146 (612)
Q Consensus 68 ~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l-~s~s~dg~v~iwd~ 146 (612)
...+.|.+.+ +.++.+-...+.|..+++..+.....+....-....++++.+.+..| ++-...+.|.++++
T Consensus 37 ~~~ld~d~~~--------~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~ 108 (318)
T 3sov_A 37 AAAVDFVFSH--------GLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNL 108 (318)
T ss_dssp EEEEEEEGGG--------TEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred cEEEEEEeCC--------CEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEEC
Confidence 4456776654 44555555667799999877632111111222456789998755554 45456788999998
Q ss_pred CCCceeEEEecCCCCeeEEEECCCCCEEEEeC----CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCC
Q 007234 147 LTGSLLGKFRASTKGISCMAVSSDGKMLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER 222 (612)
Q Consensus 147 ~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~----g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~ 222 (612)
........+.........++++|.+..|+.+. +.|+.+++........+...-...+.++++|++..|+.+....+
T Consensus 109 dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~ 188 (318)
T 3sov_A 109 DGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLN 188 (318)
T ss_dssp TSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred CCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCC
Confidence 65433333334445679999999766555544 57888887643322222333345689999998777777766678
Q ss_pred eEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceec
Q 007234 223 YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR 288 (612)
Q Consensus 223 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~ 288 (612)
.|..++++..... .+. .........+++. .+..+++-...+.|..++..+++...
T Consensus 189 ~I~~~d~dG~~~~---~~~--~~~~~~P~glav~------~~~lywtd~~~~~V~~~~~~~G~~~~ 243 (318)
T 3sov_A 189 FIHKSNLDGTNRQ---AVV--KGSLPHPFALTLF------EDILYWTDWSTHSILACNKYTGEGLR 243 (318)
T ss_dssp EEEEEETTSCSCE---EEE--CSCCSCEEEEEEE------TTEEEEEETTTTEEEEEETTTCCSCE
T ss_pred EEEEEcCCCCceE---EEe--cCCCCCceEEEEe------CCEEEEEecCCCeEEEEECCCCCceE
Confidence 9999998764422 111 1111122233332 23555555567889999987776543
No 265
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.25 E-value=0.00029 Score=69.92 Aligned_cols=185 Identities=15% Similarity=0.123 Sum_probs=115.6
Q ss_pred CcEEEEEECCCcEEEEEcCCCeEEE-EeccC-----------------CCCCeEEEEEecCCCEEEEEecCCcEEEEECC
Q 007234 86 SSLLVLGTGGGDVLALAVSAGQLKW-RLSDC-----------------HPGGVSAISFATHGSCIYSAGADGMVCEIDPL 147 (612)
Q Consensus 86 ~~~l~~gs~~g~I~vwd~~~~~~~~-~~~~~-----------------h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~ 147 (612)
+.+++++..++.|..|+..++.... ..... ....+.++++.+++..|+.+...+.|..+|..
T Consensus 30 g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~~~i~~~d~~ 109 (322)
T 2fp8_A 30 NKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSE 109 (322)
T ss_dssp CSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETTTEEEEECTT
T ss_pred CCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECCCCEEEEeCC
Confidence 6667888889999999988765431 11000 01357899999833356666555668899976
Q ss_pred CCceeEEEec-----CCCCeeEEEECC-CCCEEEEeC-------------------CeEEEEEcCCCeeEEEEecCCCCE
Q 007234 148 TGSLLGKFRA-----STKGISCMAVSS-DGKMLATAA-------------------GQLKTFNCSDHKKMQKFSGHPGAV 202 (612)
Q Consensus 148 ~~~~~~~~~~-----~~~~v~~l~~sp-dg~~l~~~~-------------------g~i~lwd~~~~~~~~~~~~h~~~v 202 (612)
+++. ..+.. .......+++.| +|++.++.. +.|+.||..+++......+ -...
T Consensus 110 ~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~-~~~p 187 (322)
T 2fp8_A 110 GGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKE-LHVP 187 (322)
T ss_dssp CEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEE-ESCC
T ss_pred CCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEeccC-CccC
Confidence 5532 22221 113578899999 998777642 4688899877764332222 2234
Q ss_pred EEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEec----------
Q 007234 203 RFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE---------- 272 (612)
Q Consensus 203 ~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~---------- 272 (612)
..++|+|+|+.|+.+....+.|.+|++........ ..+. ..+. ...+++. ++|++.++...
T Consensus 188 ~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~-~~~~-~~~g--P~gi~~d-----~~G~l~va~~~~~~~~~~~~~ 258 (322)
T 2fp8_A 188 GGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTA-EVLV-KIPN--PGNIKRN-----ADGHFWVSSSEELDGNMHGRV 258 (322)
T ss_dssp CEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCE-EEEE-ECSS--EEEEEEC-----TTSCEEEEEEEETTSSTTSCE
T ss_pred cceEECCCCCEEEEEeCCCCeEEEEECCCCcCCcc-ceEE-eCCC--CCCeEEC-----CCCCEEEEecCcccccccCCC
Confidence 67899999987776654568899999875432111 1111 1122 4556665 88886666544
Q ss_pred CCcEEEEEC
Q 007234 273 TGVCYIWYG 281 (612)
Q Consensus 273 dg~i~iwd~ 281 (612)
.+.|..+|.
T Consensus 259 ~~~v~~~d~ 267 (322)
T 2fp8_A 259 DPKGIKFDE 267 (322)
T ss_dssp EEEEEEECT
T ss_pred ccEEEEECC
Confidence 356777765
No 266
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.16 E-value=0.0024 Score=71.96 Aligned_cols=246 Identities=9% Similarity=0.146 Sum_probs=146.6
Q ss_pred cccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccc
Q 007234 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (612)
Q Consensus 4 ~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (612)
..|+++ ..+++|.+- .|+.++-|..|+..++.... +..... ..+-....+.++....
T Consensus 310 ~~i~~i--~~D~~g~lW-igt~~~Gl~~~~~~~~~~~~-~~~~~~-----------~~~l~~~~V~~i~~d~-------- 366 (795)
T 4a2l_A 310 RSVRSI--FMDSQGGMW-LGTYFGGLNYYHPIRNRFKN-IRNIPY-----------KNSLSDNVVSCIVEDK-------- 366 (795)
T ss_dssp SCEEEE--EECTTSCEE-EEESSSCEEEECGGGGSSEE-ECCCTT-----------SSSCSCSSEEEEEECT--------
T ss_pred CcEEEE--EEeCCcCEE-EEECCCCeEEeCCCcccceE-EcCCCC-----------CCCCCCCeeEEEEECC--------
Confidence 346545 788888744 46666668888876554332 211000 0000011233333221
Q ss_pred cCCcEEEEEECCCcEEEEEcCCCeEEEEecc-------CCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEe
Q 007234 84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSD-------CHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR 156 (612)
Q Consensus 84 ~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~-------~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~ 156 (612)
...+-+|+.++-|..|+..++....-... -....|.++...++|+.|+.|+.++-|..||..+++......
T Consensus 367 --~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~ 444 (795)
T 4a2l_A 367 --DKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQ 444 (795)
T ss_dssp --TSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECT
T ss_pred --CCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeec
Confidence 33477899988899999988765432211 123579999998888757778887789999988776433221
Q ss_pred ----cCCCCeeEEEECCCCCEEEEeCCeEEEEEcCCCeeEEEEec------CCCCEEEEEEeeCCcEEEEEEcCCCeEEE
Q 007234 157 ----ASTKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSG------HPGAVRFMTFSDNGKYVLSSAVGERYIAL 226 (612)
Q Consensus 157 ----~~~~~v~~l~~spdg~~l~~~~g~i~lwd~~~~~~~~~~~~------h~~~v~~l~~sp~~~~l~s~s~~d~~i~v 226 (612)
.....|.++...++|++.+...+-+..||.++++....... +...|.++...++|...+.+ . +-+..
T Consensus 445 ~~~~l~~~~v~~i~~d~~g~lwigt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt--~-~Gl~~ 521 (795)
T 4a2l_A 445 RNSQLVNENVYAILPDGEGNLWLGTLSALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGG--E-EGLSV 521 (795)
T ss_dssp TTSCCSCSCEEEEEECSSSCEEEEESSCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEE--S-SCEEE
T ss_pred CCCCcCCCeeEEEEECCCCCEEEEecCceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEe--C-CceEE
Confidence 12357899999999987776666689999888754322111 23578999998989866543 3 44888
Q ss_pred EEcCCCccccceee-EeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcc
Q 007234 227 WRTDGVKKQSASCV-LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE 285 (612)
Q Consensus 227 wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~ 285 (612)
|+..+... ..... .....+...+..+... ++|.+.+ ++.. -|..||..+++
T Consensus 522 ~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d-----~~g~lWi-gT~~-Gl~~~d~~~~~ 573 (795)
T 4a2l_A 522 FKQEGLDI-QKASILPVSNVTKLFTNCIYEA-----SNGIIWV-GTRE-GFYCFNEKDKQ 573 (795)
T ss_dssp EEEETTEE-EECCCSCSCGGGGSCEEEEEEC-----TTSCEEE-EESS-CEEEEETTTTE
T ss_pred EeCCCCeE-EEecCCCCCCCCCCeeEEEEEC-----CCCCEEE-EeCC-CceeECCCCCc
Confidence 88776542 00000 0001122334455554 6676544 4444 57888876654
No 267
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.14 E-value=0.00017 Score=79.44 Aligned_cols=243 Identities=9% Similarity=0.035 Sum_probs=128.1
Q ss_pred eeEEEEcC-CCCEEEEEeCCC-----------cEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeee
Q 007234 8 DILTSFSP-ALDYFAICSGDA-----------RIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLS 75 (612)
Q Consensus 8 ~l~~~fsp-dg~~las~s~dg-----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~ 75 (612)
...+++.| +|+.++.|+.++ .+.+||..+++....-.... .+ ...+.......
T Consensus 188 ~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~--------------~~-~~~~~~~~~~~ 252 (656)
T 1k3i_A 188 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVT--------------KH-DMFCPGISMDG 252 (656)
T ss_dssp CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEEC--------------SC-CCSSCEEEECT
T ss_pred ceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCC--------------CC-CCccccccCCC
Confidence 34668888 899888887643 57889988876432110000 00 00011111111
Q ss_pred cccccccccCCcEEEEEEC-CCcEEEEEcCCCeEEEEeccCCCCC-eEEEEEecCCCEEEEEe-cC-----CcEEEEECC
Q 007234 76 VDRKKKRKLGSSLLVLGTG-GGDVLALAVSAGQLKWRLSDCHPGG-VSAISFATHGSCIYSAG-AD-----GMVCEIDPL 147 (612)
Q Consensus 76 ~~~~~~~~~~~~~l~~gs~-~g~I~vwd~~~~~~~~~~~~~h~~~-V~~l~~sp~~~~l~s~s-~d-----g~v~iwd~~ 147 (612)
+ +.++++|+. ++.+.+||+.+++-... ..-+... -.++++.++|+.++.|+ .+ ..+.+||..
T Consensus 253 -~--------g~lyv~GG~~~~~v~~yd~~t~~W~~~-~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~ 322 (656)
T 1k3i_A 253 -N--------GQIVVTGGNDAKKTSLYDSSSDSWIPG-PDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPS 322 (656)
T ss_dssp -T--------SCEEEECSSSTTCEEEEEGGGTEEEEC-CCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETT
T ss_pred -C--------CCEEEeCCCCCCceEEecCcCCceeEC-CCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCC
Confidence 1 677888874 45699999998765422 1112222 23455667899888888 34 569999998
Q ss_pred CCceeEEE----ecCCCCeeEEEECCCCCEEEEe----------C-CeEEEEEcCCCeeEEEEecCCC---------CEE
Q 007234 148 TGSLLGKF----RASTKGISCMAVSSDGKMLATA----------A-GQLKTFNCSDHKKMQKFSGHPG---------AVR 203 (612)
Q Consensus 148 ~~~~~~~~----~~~~~~v~~l~~spdg~~l~~~----------~-g~i~lwd~~~~~~~~~~~~h~~---------~v~ 203 (612)
+++-...- ......-....+..+++.++.+ . ..+..||..+.........+.. .-.
T Consensus 323 t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~ 402 (656)
T 1k3i_A 323 SKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGN 402 (656)
T ss_dssp TTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCE
T ss_pred CCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCc
Confidence 76533220 0000000001112334443333 2 5688999988764433322211 223
Q ss_pred EEEEee-CCcEEEEEEcCCC-----------eEEEEEcCCCccccceeeE--eecCCceeEEeEEecCCccCCCCcEEEE
Q 007234 204 FMTFSD-NGKYVLSSAVGER-----------YIALWRTDGVKKQSASCVL--AMEHPAVFMDCRCIDNGGVDDAGLYVLA 269 (612)
Q Consensus 204 ~l~~sp-~~~~l~s~s~~d~-----------~i~vwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~t 269 (612)
++.|.. +++.++.+|. ++ .+.+||..+..-. .+. .+... ......... ++++.++.
T Consensus 403 av~~~~~~~~i~v~GG~-~~~~~~~~~~~~~~v~~yd~~~~~W~---~~~~~~mp~~-R~~~~~~~l-----~~g~i~v~ 472 (656)
T 1k3i_A 403 AVMYDAVKGKILTFGGS-PDYQDSDATTNAHIITLGEPGTSPNT---VFASNGLYFA-RTFHTSVVL-----PDGSTFIT 472 (656)
T ss_dssp EEEEETTTTEEEEECCB-SSSSSSBCCCCEEEEECCSTTSCCEE---EECTTCCSSC-CBSCEEEEC-----TTSCEEEE
T ss_pred eEeccCCCCeEEEEeCC-CCCCCCCcCCcceEEEcCCCCCCCee---EEccCCCCCC-cccCCeEEC-----CCCCEEEE
Confidence 444443 6666666652 22 5777777665422 111 11111 111222232 78999999
Q ss_pred EecC-----------CcEEEEECCCcc
Q 007234 270 ISET-----------GVCYIWYGQNIE 285 (612)
Q Consensus 270 ~s~d-----------g~i~iwd~~~~~ 285 (612)
|+.+ ..+.+||..+.+
T Consensus 473 GG~~~~~~~~~~~~~~~v~~ydp~t~~ 499 (656)
T 1k3i_A 473 GGQRRGIPFEDSTPVFTPEIYVPEQDT 499 (656)
T ss_dssp CCBSBCCTTCCCSBCCCCEEEEGGGTE
T ss_pred CCcccCcCcCCCCcccceEEEcCCCCc
Confidence 8864 467888876543
No 268
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.07 E-value=0.002 Score=63.29 Aligned_cols=183 Identities=13% Similarity=0.098 Sum_probs=109.8
Q ss_pred CcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecC-C-cEEEEECCCCceeEEEecC-CCCe
Q 007234 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD-G-MVCEIDPLTGSLLGKFRAS-TKGI 162 (612)
Q Consensus 86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~d-g-~v~iwd~~~~~~~~~~~~~-~~~v 162 (612)
+.++++-..++.|..||...+... .+. ....+.++++.++|+.+++.... + .|..+|..+++........ ....
T Consensus 43 g~lyv~d~~~~~I~~~d~~g~~~~-~~~--~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~ 119 (306)
T 2p4o_A 43 GTIFVTNHEVGEIVSITPDGNQQI-HAT--VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFL 119 (306)
T ss_dssp SCEEEEETTTTEEEEECTTCCEEE-EEE--CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCE
T ss_pred CCEEEEeCCCCeEEEECCCCceEE-EEe--CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCcccc
Confidence 565555557888999998764332 221 23568999999999865544332 2 4777887777754333221 2234
Q ss_pred eEEEECCCCCEEEEeC--CeEEEEEcCCCee-EEEEe---------cCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcC
Q 007234 163 SCMAVSSDGKMLATAA--GQLKTFNCSDHKK-MQKFS---------GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD 230 (612)
Q Consensus 163 ~~l~~spdg~~l~~~~--g~i~lwd~~~~~~-~~~~~---------~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~ 230 (612)
..++..+++..+++-. +.|+.+|..+++. +.... +.-...+.+ +|++++|+.+....+.|.+|++.
T Consensus 120 ~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~ 197 (306)
T 2p4o_A 120 NGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVD 197 (306)
T ss_dssp EEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBC
T ss_pred CcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeC
Confidence 5666666666555543 8999999876532 21111 111234555 88888887776678899999987
Q ss_pred C-CccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECC
Q 007234 231 G-VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (612)
Q Consensus 231 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~ 282 (612)
. +........... .....+++. ++|++.++....+.|.+|+..
T Consensus 198 ~~g~~~~~~~~~~~----~~P~gi~vd-----~dG~l~va~~~~~~V~~~~~~ 241 (306)
T 2p4o_A 198 STDKPGEPEIFVEQ----TNIDDFAFD-----VEGNLYGATHIYNSVVRIAPD 241 (306)
T ss_dssp TTSCBCCCEEEEES----CCCSSEEEB-----TTCCEEEECBTTCCEEEECTT
T ss_pred CCCCCCccEEEecc----CCCCCeEEC-----CCCCEEEEeCCCCeEEEECCC
Confidence 5 322111111111 122344555 888876666667788888753
No 269
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.06 E-value=0.0028 Score=60.10 Aligned_cols=192 Identities=8% Similarity=0.087 Sum_probs=117.2
Q ss_pred ccceeEEEEcCCCCEE-EEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccc
Q 007234 5 NIRDILTSFSPALDYF-AICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (612)
Q Consensus 5 ~V~~l~~~fspdg~~l-as~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (612)
.+..+ +|+|++..| |+...++.|...|.. |+.+..+.-. + ..+...+++...
T Consensus 28 ~lSGl--a~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~---------------g--~~D~EGIa~~~~------- 80 (255)
T 3qqz_A 28 NISSL--TWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLD---------------F--VKDLETIEYIGD------- 80 (255)
T ss_dssp CEEEE--EEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECS---------------S--CSSEEEEEECST-------
T ss_pred Cccee--EEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecC---------------C--CCChHHeEEeCC-------
Confidence 45556 999987644 556678899999997 8888776421 1 123444555422
Q ss_pred cCCcEEEEEECCCcEEEEEcCCCeE---EEEec-----cCCCCCeEEEEEecCCCEEEEEecCCcEEEEECC---CCcee
Q 007234 84 LGSSLLVLGTGGGDVLALAVSAGQL---KWRLS-----DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL---TGSLL 152 (612)
Q Consensus 84 ~~~~~l~~gs~~g~I~vwd~~~~~~---~~~~~-----~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~---~~~~~ 152 (612)
+.++++.-.++.+.++++..... +.... ........+++|+|.++.|+++.......+|.+. ....+
T Consensus 81 --g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l 158 (255)
T 3qqz_A 81 --NQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNEL 158 (255)
T ss_dssp --TEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCC
T ss_pred --CEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCce
Confidence 44445544666788888765442 11221 1234557999999999888888765554454443 11222
Q ss_pred EEEec-------CCCCeeEEEECCCCCEEEEeC---CeEEEEEcCCCeeEEEEecCC---------CCEEEEEEeeCCcE
Q 007234 153 GKFRA-------STKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHP---------GAVRFMTFSDNGKY 213 (612)
Q Consensus 153 ~~~~~-------~~~~v~~l~~spdg~~l~~~~---g~i~lwd~~~~~~~~~~~~h~---------~~v~~l~~sp~~~~ 213 (612)
..+.. +...+.+++++|....+++-+ ..+.++|.+ ++.+..+.-.. ...-.|+|.++|+.
T Consensus 159 ~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~l 237 (255)
T 3qqz_A 159 HISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNI 237 (255)
T ss_dssp EEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCE
T ss_pred eeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCE
Confidence 22211 233678999999665554444 789999975 54555443221 25678999999985
Q ss_pred EEEEEcCCCeEEEEE
Q 007234 214 VLSSAVGERYIALWR 228 (612)
Q Consensus 214 l~s~s~~d~~i~vwd 228 (612)
.++ + +.+.++++.
T Consensus 238 yIv-s-E~n~~y~f~ 250 (255)
T 3qqz_A 238 YIV-S-EPNRFYRFT 250 (255)
T ss_dssp EEE-E-TTTEEEEEE
T ss_pred EEE-c-CCceEEEEE
Confidence 554 5 566665554
No 270
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.06 E-value=0.0032 Score=70.84 Aligned_cols=241 Identities=13% Similarity=0.076 Sum_probs=143.9
Q ss_pred ccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccccc
Q 007234 5 NIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (612)
Q Consensus 5 ~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (612)
.|+++ ..+++|++. .|+.++-|..||..+++............ .+-....+.++.....
T Consensus 358 ~V~~i--~~d~~g~lW-iGt~~~Gl~~~~~~~~~~~~~~~~~~~~~----------~~l~~~~v~~i~~d~~-------- 416 (795)
T 4a2l_A 358 VVSCI--VEDKDKNLW-IGTNDGGLNLYNPITQRFTSYTLQEDESA----------RGIGSNNIKAVYVDEK-------- 416 (795)
T ss_dssp SEEEE--EECTTSCEE-EEESSSCEEEECTTTCCEEEECCC----------------CCSCSCEEEEEEETT--------
T ss_pred eeEEE--EECCCCCEE-EEECCCCeEEEcCCCCcEEEEecCCCCcc----------cCCCCccEEEEEEcCC--------
Confidence 46444 788888754 46666668999988776543221100000 0000112223322211
Q ss_pred CCcEEEEEECCCcEEEEEcCCCeEEEEecc---CCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEec----
Q 007234 85 GSSLLVLGTGGGDVLALAVSAGQLKWRLSD---CHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA---- 157 (612)
Q Consensus 85 ~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~---~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~---- 157 (612)
+.+|.+|+.++-|..||..+++...-... .....|.++...++|.. +.|+. +-+.+||..+++.......
T Consensus 417 -g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~l-wigt~-~Gl~~~~~~~~~~~~~~~~~~~~ 493 (795)
T 4a2l_A 417 -KSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNL-WLGTL-SALVRFNPEQRSFTTIEKEKDGT 493 (795)
T ss_dssp -TTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCE-EEEES-SCEEEEETTTTEEEECCBCTTCC
T ss_pred -CCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCE-EEEec-CceeEEeCCCCeEEEcccccccc
Confidence 45488899888899999998875432210 13457999998888874 44555 4588999877654332211
Q ss_pred --CCCCeeEEEECCCCCEEEEeCCeEEEEEcCCCeeEEEEe-------cCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEE
Q 007234 158 --STKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFS-------GHPGAVRFMTFSDNGKYVLSSAVGERYIALWR 228 (612)
Q Consensus 158 --~~~~v~~l~~spdg~~l~~~~g~i~lwd~~~~~~~~~~~-------~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd 228 (612)
....|.++...++|++.+...+-+..||..+++. .+. .....|.++...++|...+.+ .. -+..||
T Consensus 494 ~~~~~~i~~i~~d~~g~lWigt~~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT--~~-Gl~~~d 568 (795)
T 4a2l_A 494 PVVSKQITTLFRDSHKRLWIGGEEGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGT--RE-GFYCFN 568 (795)
T ss_dssp BCCCCCEEEEEECTTCCEEEEESSCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEE--SS-CEEEEE
T ss_pred ccCCceEEEEEECCCCCEEEEeCCceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEe--CC-CceeEC
Confidence 2357899999999988776666788999887765 332 123568999998999866544 24 478888
Q ss_pred cCCCccccceeeEeec--CCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcc
Q 007234 229 TDGVKKQSASCVLAME--HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE 285 (612)
Q Consensus 229 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~ 285 (612)
..+.... .+... -+...+..+... ++|.+.+++ . +-|..|+..+++
T Consensus 569 ~~~~~~~----~~~~~~gl~~~~i~~i~~d-----~~g~lWi~t-~-~Gl~~~~~~~~~ 616 (795)
T 4a2l_A 569 EKDKQIK----RYNTTNGLPNNVVYGILED-----SFGRLWLST-N-RGISCFNPETEK 616 (795)
T ss_dssp TTTTEEE----EECGGGTCSCSCEEEEEEC-----TTSCEEEEE-T-TEEEEEETTTTE
T ss_pred CCCCcEE----EeCCCCCCchhheEEEEEC-----CCCCEEEEc-C-CceEEEcCCCCc
Confidence 7765422 11111 122334445454 667655544 3 457778876654
No 271
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.03 E-value=0.0021 Score=60.87 Aligned_cols=196 Identities=13% Similarity=0.133 Sum_probs=125.7
Q ss_pred ceeEEEeeecccccccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEEC
Q 007234 67 DYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDP 146 (612)
Q Consensus 67 ~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~ 146 (612)
....++|.+.. +.+.++...++.|...|+. ++.+.++.-+-....-++++.+++.++++.-.++.+.++++
T Consensus 28 ~lSGla~~~~~--------~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v 98 (255)
T 3qqz_A 28 NISSLTWSAQS--------NTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISL 98 (255)
T ss_dssp CEEEEEEETTT--------TEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred CcceeEEeCCC--------CEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence 46667777553 5677778888889999998 88877764333357889999988876666556788999887
Q ss_pred CCCce---eEEEe------cCCCCeeEEEECCCCCEEEEeC--C--eEEEEEc-CCCeeEEEEe-------cCCCCEEEE
Q 007234 147 LTGSL---LGKFR------ASTKGISCMAVSSDGKMLATAA--G--QLKTFNC-SDHKKMQKFS-------GHPGAVRFM 205 (612)
Q Consensus 147 ~~~~~---~~~~~------~~~~~v~~l~~spdg~~l~~~~--g--~i~lwd~-~~~~~~~~~~-------~h~~~v~~l 205 (612)
..... +.... .....+..++|+|+++.|+++. . .|+.|+- .....+..+. .+...+.++
T Consensus 99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l 178 (255)
T 3qqz_A 99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA 178 (255)
T ss_dssp CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeE
Confidence 65432 23332 1233678999999997777766 3 4555551 0111122221 123457889
Q ss_pred EEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecC-------CceeEEeEEecCCccCCCCcEEEEEecCCcEEE
Q 007234 206 TFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEH-------PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYI 278 (612)
Q Consensus 206 ~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~i 278 (612)
++.|....++..+..++.+.++|.... .. ....+.. ...-...+++. ++|+ |...++.+.++.
T Consensus 179 ~~dp~tg~lliLS~~s~~L~~~d~~g~-~~---~~~~L~~g~~~l~~~~~qpEGia~d-----~~G~-lyIvsE~n~~y~ 248 (255)
T 3qqz_A 179 EFNQQKNTLLVLSHESRALQEVTLVGE-VI---GEMSLTKGSRGLSHNIKQAEGVAMD-----ASGN-IYIVSEPNRFYR 248 (255)
T ss_dssp EEETTTTEEEEEETTTTEEEEECTTCC-EE---EEEECSTTGGGCSSCCCSEEEEEEC-----TTCC-EEEEETTTEEEE
T ss_pred EEcCCCCeEEEEECCCCeEEEEcCCCC-EE---EEEEcCCccCCcccccCCCCeeEEC-----CCCC-EEEEcCCceEEE
Confidence 999977666666667889999997654 22 1223321 11234567776 8887 555588777777
Q ss_pred EEC
Q 007234 279 WYG 281 (612)
Q Consensus 279 wd~ 281 (612)
|.-
T Consensus 249 f~~ 251 (255)
T 3qqz_A 249 FTP 251 (255)
T ss_dssp EEC
T ss_pred EEe
Confidence 753
No 272
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.03 E-value=0.002 Score=65.73 Aligned_cols=196 Identities=10% Similarity=-0.072 Sum_probs=115.2
Q ss_pred EEEEcCCCCEEEEE-eCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcE
Q 007234 10 LTSFSPALDYFAIC-SGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (612)
Q Consensus 10 ~~~fspdg~~las~-s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (612)
.++|++.+..|..+ ...+.|..++...+.....+........ .++..+.. +.+
T Consensus 120 gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~------------------glavd~~~--------g~l 173 (386)
T 3v65_B 120 ALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPG------------------GLAVDWVH--------DKL 173 (386)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCC------------------CEEEETTT--------TEE
T ss_pred EEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCcc------------------EEEEEeCC--------CeE
Confidence 45888765555444 4467888888876554333221111111 12222111 344
Q ss_pred EEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEe-cC-CcEEEEECCCCceeEEEecCCCCeeEEE
Q 007234 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG-AD-GMVCEIDPLTGSLLGKFRASTKGISCMA 166 (612)
Q Consensus 89 l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s-~d-g~v~iwd~~~~~~~~~~~~~~~~v~~l~ 166 (612)
.++-...+.|.+.++...... .+....-....++++.|.+..|+.+. .. +.|..+++............-.....|+
T Consensus 174 Y~~d~~~~~I~~~~~dg~~~~-~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla 252 (386)
T 3v65_B 174 YWTDSGTSRIEVANLDGAHRK-VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLT 252 (386)
T ss_dssp EEEETTTTEEEECBTTSCSCE-EEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEE
T ss_pred EEEcCCCCeEEEEeCCCCceE-EeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEE
Confidence 444455566888887654433 22233345679999999776666554 34 6898888764433333333344678999
Q ss_pred ECCCCCEEEEeC---CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCcc
Q 007234 167 VSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK 234 (612)
Q Consensus 167 ~spdg~~l~~~~---g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~ 234 (612)
++|++..|+.+. +.|..+|+........+.........+++ ..+. ++.+....+.|..++..+++.
T Consensus 253 vd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~-ly~td~~~~~V~~~~~~~G~~ 321 (386)
T 3v65_B 253 IDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDS-LYWTDWHTKSINSANKFTGKN 321 (386)
T ss_dssp EEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTE-EEEEETTTTEEEEEETTTCCS
T ss_pred EeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCE-EEEeeCCCCeEEEEECCCCcc
Confidence 998887777665 78999998754433333333445677888 4444 444444677888888655543
No 273
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.01 E-value=0.0049 Score=60.84 Aligned_cols=193 Identities=7% Similarity=-0.092 Sum_probs=112.0
Q ss_pred EEEEcCCCCEEEEE-eCCCcEEEEECCCC---cEEEE-eeccCCccccccccccccccccccceeEEEeeeccccccccc
Q 007234 10 LTSFSPALDYFAIC-SGDARIKIWDTLKG---QVQTE-FADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (612)
Q Consensus 10 ~~~fspdg~~las~-s~dg~i~iwd~~~~---~~~~~-~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (612)
.++|++++..|..+ ...+.|..++..+. ..... +..... ....++.....
T Consensus 34 g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~------------------~p~glavd~~~------- 88 (316)
T 1ijq_A 34 ALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQ------------------APDGLAVDWIH------- 88 (316)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCS------------------CCCEEEEETTT-------
T ss_pred EEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCC------------------CcCEEEEeecC-------
Confidence 55899876655544 44688888888751 22111 110000 11222222211
Q ss_pred CCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecC--CcEEEEECCCCceeEEE-ecCCCC
Q 007234 85 GSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD--GMVCEIDPLTGSLLGKF-RASTKG 161 (612)
Q Consensus 85 ~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~d--g~v~iwd~~~~~~~~~~-~~~~~~ 161 (612)
+.+.++-...+.|.++++...... .+.........++++.|.+..|+.+... +.|...++. |.....+ ...-..
T Consensus 89 -~~ly~~d~~~~~I~~~~~~g~~~~-~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~~~~~~~ 165 (316)
T 1ijq_A 89 -SNIYWTDSVLGTVSVADTKGVKRK-TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTENIQW 165 (316)
T ss_dssp -TEEEEEETTTTEEEEEETTSSSEE-EEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEECSSCSC
T ss_pred -CeEEEEECCCCEEEEEeCCCCceE-EEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-CCCeEEEEECCCCC
Confidence 344444456677999998754433 2322234567899999976666655543 688888875 4444443 223346
Q ss_pred eeEEEECCCCCEEEEeC---CeEEEEEcCCCeeEEEE-ec--CCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCc
Q 007234 162 ISCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKF-SG--HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (612)
Q Consensus 162 v~~l~~spdg~~l~~~~---g~i~lwd~~~~~~~~~~-~~--h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~ 233 (612)
...++++|++..|+.+. +.|..+|+..... +.+ .. .-.....+++. .+ .++.+....+.|..++..+++
T Consensus 166 P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~-~~~~~~~~~~~~P~giav~-~~-~ly~~d~~~~~V~~~~~~~g~ 240 (316)
T 1ijq_A 166 PNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVF-ED-KVFWTDIINEAIFSANRLTGS 240 (316)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECTTTTSSEEEEEEE-TT-EEEEEETTTTEEEEEETTTCC
T ss_pred ceEEEEeccCCEEEEEECCCCeEEEEecCCCce-EEEeecCCccCCcEEEEEE-CC-EEEEEECCCCeEEEEeCCCCc
Confidence 78999999887777665 6999999875332 223 21 22345677774 34 444444467788888876665
No 274
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.01 E-value=0.0024 Score=64.15 Aligned_cols=194 Identities=10% Similarity=-0.075 Sum_probs=113.2
Q ss_pred EEEEcCCCCEEEEE-eCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcE
Q 007234 10 LTSFSPALDYFAIC-SGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (612)
Q Consensus 10 ~~~fspdg~~las~-s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (612)
.++|++.+..|..+ ...+.|..++...+.....+...... ...++..... +.+
T Consensus 77 ~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~------------------p~glavd~~~--------g~l 130 (349)
T 3v64_C 77 ALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLES------------------PGGLAVDWVH--------DKL 130 (349)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSC------------------CCEEEEETTT--------TEE
T ss_pred EEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCC------------------ccEEEEecCC--------CeE
Confidence 45888765555544 34677888887655433322111111 1122222211 344
Q ss_pred EEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEe-cC-CcEEEEECCCCceeEEE-ecCCCCeeEE
Q 007234 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG-AD-GMVCEIDPLTGSLLGKF-RASTKGISCM 165 (612)
Q Consensus 89 l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s-~d-g~v~iwd~~~~~~~~~~-~~~~~~v~~l 165 (612)
.++-...+.|.+.++...... .+....-....++++.|.+..|+.+. .. +.|..+++... ....+ ...-.....+
T Consensus 131 y~~d~~~~~I~~~~~dG~~~~-~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~-~~~~~~~~~~~~PnGl 208 (349)
T 3v64_C 131 YWTDSGTSRIEVANLDGAHRK-VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS-GRRIIADTHLFWPNGL 208 (349)
T ss_dssp EEEETTTTEEEEEETTSCSCE-EEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-SCEESCCSSCSCEEEE
T ss_pred EEEcCCCCeEEEEcCCCCceE-EEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCC-CcEEEEECCCCCcceE
Confidence 445555667888888755433 22233345679999999666655554 44 78999987643 33333 2233467899
Q ss_pred EECCCCCEEEEeC---CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCc
Q 007234 166 AVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (612)
Q Consensus 166 ~~spdg~~l~~~~---g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~ 233 (612)
+++|++..|+.+. +.|..+|+........+.........+++ ..+ .++.+....+.|..++..+++
T Consensus 209 a~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav-~~~-~ly~td~~~~~V~~~~~~~G~ 277 (349)
T 3v64_C 209 TIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FED-SLYWTDWHTKSINSANKFTGK 277 (349)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE-ETT-EEEEEETTTTEEEEEETTTCC
T ss_pred EEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE-ECC-EEEEecCCCCeEEEEEccCCC
Confidence 9999887777765 78999998754333333333445677887 344 444444467788888755554
No 275
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.99 E-value=0.0014 Score=67.86 Aligned_cols=148 Identities=13% Similarity=0.125 Sum_probs=86.3
Q ss_pred EEEEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcE
Q 007234 10 LTSFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (612)
Q Consensus 10 ~~~fsp-dg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (612)
.++++| ++..|..+...+.|+.+|..++....... ... ....++|.+. ++.
T Consensus 141 ~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~------------------~P~~ia~d~~---------G~~ 192 (430)
T 3tc9_A 141 WLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLS------------------KVRTICWTHE---------ADS 192 (430)
T ss_dssp EEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCS------------------CEEEEEECTT---------SSE
T ss_pred EEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCC------------------CcceEEEeCC---------CCE
Confidence 459998 45555555544889999998776544332 111 1223444332 554
Q ss_pred EEEEEC-CC----cEEEEEcCCCeE-EEEeccCCCCCeEEEEEec-CCCEEEEEecCCcEEEEECCCCceeEEEecC-CC
Q 007234 89 LVLGTG-GG----DVLALAVSAGQL-KWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKFRAS-TK 160 (612)
Q Consensus 89 l~~gs~-~g----~I~vwd~~~~~~-~~~~~~~h~~~V~~l~~sp-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~-~~ 160 (612)
|+++.. ++ .+.+++...... ...+. ......+++++| +|..+++-..++.|..+|...+......... ..
T Consensus 193 lyvad~~~~~~~~~v~~~~~~g~~~~~~~l~--~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~ 270 (430)
T 3tc9_A 193 MIITNDQNNNDRPNNYILTRESGFKVITELT--KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSG 270 (430)
T ss_dssp EEEEECCSCTTSEEEEEEEGGGTSCSEEEEE--ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSS
T ss_pred EEEEeCCCCcccceEEEEeCCCceeeeeeec--cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCC
Confidence 555544 22 234444332211 01111 123457888999 6665555557789999998876543333322 23
Q ss_pred CeeEEEECCCCCEEEEeC---CeEEEEEcC
Q 007234 161 GISCMAVSSDGKMLATAA---GQLKTFNCS 187 (612)
Q Consensus 161 ~v~~l~~spdg~~l~~~~---g~i~lwd~~ 187 (612)
....++|+|+|++|+.+. +.|+.++..
T Consensus 271 ~P~gia~~pdG~~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 271 WEFHIQFHPSGNYAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp CCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred cceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence 568999999999666654 789998765
No 276
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.91 E-value=0.011 Score=65.88 Aligned_cols=192 Identities=8% Similarity=-0.059 Sum_probs=115.2
Q ss_pred CcEEEEEECCCcEEEEEcCCCe---EEEEeccCCCCCeEEEEEecCCCEEEEE-ecCCcEEEEECCCCceeEEEecCCCC
Q 007234 86 SSLLVLGTGGGDVLALAVSAGQ---LKWRLSDCHPGGVSAISFATHGSCIYSA-GADGMVCEIDPLTGSLLGKFRASTKG 161 (612)
Q Consensus 86 ~~~l~~gs~~g~I~vwd~~~~~---~~~~~~~~h~~~V~~l~~sp~~~~l~s~-s~dg~v~iwd~~~~~~~~~~~~~~~~ 161 (612)
+.++++-...+.|+.+++.... ....+.........+|++.+.++.|+.+ ...+.|.+.++........+......
T Consensus 436 ~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~ 515 (791)
T 3m0c_C 436 NRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSK 515 (791)
T ss_dssp TEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCC
T ss_pred CeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCC
Confidence 3344444455668888886531 1112223234567899999877655544 56789999998755443334444456
Q ss_pred eeEEEECCCCCEEEEeC----CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccc
Q 007234 162 ISCMAVSSDGKMLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA 237 (612)
Q Consensus 162 v~~l~~spdg~~l~~~~----g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~ 237 (612)
...|+++|.+..|+.+. +.|...++........+...-.....|++.+.+..|+.+-.....|...++......
T Consensus 516 P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~-- 593 (791)
T 3m0c_C 516 PRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK-- 593 (791)
T ss_dssp EEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE--
T ss_pred cceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceE--
Confidence 89999999866666554 578888887554433344344568899999877777777656778999998765433
Q ss_pred eeeEeec-CCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCccee
Q 007234 238 SCVLAME-HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL 287 (612)
Q Consensus 238 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~ 287 (612)
.+.... .....+.+..+ .+++.++-...+.|...+..+|+.+
T Consensus 594 -~v~~~~~~l~~P~glav~-------~~~lYwtD~~~~~I~~~dk~tG~~~ 636 (791)
T 3m0c_C 594 -TILEDEKRLAHPFSLAVF-------EDKVFWTDIINEAIFSANRLTGSDV 636 (791)
T ss_dssp -EEEECTTTTSSEEEEEEE-------TTEEEEEETTTTEEEEEETTTCCCC
T ss_pred -EEecCCCccCCCCEEEEe-------CCEEEEEECCCCEEEEEeCCCCcce
Confidence 122111 11122222222 2344444455678888887676544
No 277
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=97.91 E-value=0.005 Score=69.12 Aligned_cols=245 Identities=10% Similarity=0.063 Sum_probs=141.4
Q ss_pred ccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccccc
Q 007234 5 NIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (612)
Q Consensus 5 ~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (612)
.|+++ ..+++|.+ -.|+.++-|..|+..++.... +....... . ..+-....+.++.-..
T Consensus 314 ~v~~i--~~D~~g~l-Wigt~~~Gl~~~~~~~~~~~~-~~~~~~~~------~--~~~l~~~~v~~i~~d~--------- 372 (781)
T 3v9f_A 314 SARYI--FQDSFNNI-WIGTWGGGINFISNAPPTFHT-WSYSPTQM------N--ESSLSNKVVSSVCDDG--------- 372 (781)
T ss_dssp CEEEE--EECSSCCE-EEEEBSSCEEEECSSCCSCEE-EC----CC------C--SSCCSSSCEEEEEECT---------
T ss_pred eEEEE--EEeCCCCE-EEEecCCeEEEeCCCCCccee-eccCcccc------c--cCCCCCcceEEEEEcC---------
Confidence 45444 77888864 345555567888877655432 21000000 0 0000011222222211
Q ss_pred CCcEEEEEECCCcEEEEEcCCCeEEEEec--cCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEec---CC
Q 007234 85 GSSLLVLGTGGGDVLALAVSAGQLKWRLS--DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA---ST 159 (612)
Q Consensus 85 ~~~~l~~gs~~g~I~vwd~~~~~~~~~~~--~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~---~~ 159 (612)
...|.+|+.++-|..|+..++....-.. ......|.++...++|. |+.|+.++-+..+|..+++.. .+.. ..
T Consensus 373 -~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~ 449 (781)
T 3v9f_A 373 -QGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGN-LWFGTYLGNISYYNTRLKKFQ-IIELEKNEL 449 (781)
T ss_dssp -TSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSC-EEEEETTEEEEEECSSSCEEE-ECCSTTTCC
T ss_pred -CCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCC-EEEEeccCCEEEEcCCCCcEE-EeccCCCCC
Confidence 3457788877789999987654431110 12346789998887776 566777777999998776543 3321 24
Q ss_pred CCeeEEEECCCCCEEEEeCCeEEEEEcCCCeeEEEEecC-----CCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCcc
Q 007234 160 KGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGH-----PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK 234 (612)
Q Consensus 160 ~~v~~l~~spdg~~l~~~~g~i~lwd~~~~~~~~~~~~h-----~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~ 234 (612)
..|.++...++|.+.+...+-|..||..+++........ ...|.++...++|...+.+ .++-+..|+..+.+.
T Consensus 450 ~~v~~i~~d~~g~lwigt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt--~~~Gl~~~~~~~~~~ 527 (781)
T 3v9f_A 450 LDVRVFYEDKNKKIWIGTHAGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGT--FGGGVGIYTPDMQLV 527 (781)
T ss_dssp CCEEEEEECTTSEEEEEETTEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEE--SSSCEEEECTTCCEE
T ss_pred CeEEEEEECCCCCEEEEECCceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEE--cCCCEEEEeCCCCeE
Confidence 579999999988877666677999998877543322222 3578999999999866544 333477788766542
Q ss_pred ccceeeEeec--CCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcc
Q 007234 235 QSASCVLAME--HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE 285 (612)
Q Consensus 235 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~ 285 (612)
. .+... -+...+..+... ++|.+. .++.+|.+..||..+++
T Consensus 528 ~----~~~~~~~l~~~~i~~i~~d-----~~g~lW-i~T~~Glv~~~d~~~~~ 570 (781)
T 3v9f_A 528 R----KFNQYEGFCSNTINQIYRS-----SKGQMW-LATGEGLVCFPSARNFD 570 (781)
T ss_dssp E----EECTTTTCSCSCEEEEEEC-----TTSCEE-EEETTEEEEESCTTTCC
T ss_pred E----EccCCCCCCCCeeEEEEEC-----CCCCEE-EEECCCceEEECCCCCc
Confidence 2 11111 122334455554 666644 44557765888876654
No 278
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.87 E-value=0.0065 Score=59.96 Aligned_cols=145 Identities=9% Similarity=-0.060 Sum_probs=91.8
Q ss_pred CcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEe--cCCcEEEEECCCCceeEEE-ecCCCCe
Q 007234 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG--ADGMVCEIDPLTGSLLGKF-RASTKGI 162 (612)
Q Consensus 86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s--~dg~v~iwd~~~~~~~~~~-~~~~~~v 162 (612)
+.+.++-...+.|.++++...... .+.........++++.|.+..|+.+. ..+.|...++.. .....+ ...-...
T Consensus 91 g~ly~~d~~~~~I~~~~~dG~~~~-~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG-~~~~~~~~~~l~~P 168 (318)
T 3sov_A 91 EKLYWTDSETNRIEVSNLDGSLRK-VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG-SSRFIIINSEIYWP 168 (318)
T ss_dssp TEEEEEETTTTEEEEEETTSCSCE-EEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTS-CSCEEEECSSCSCE
T ss_pred CeEEEEECCCCEEEEEECCCCcEE-EEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCC-CCeEEEEECCCCCc
Confidence 344444455677889988754432 22223445679999999766666665 257898888753 333333 3333467
Q ss_pred eEEEECCCCCEEEEeC---CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCcc
Q 007234 163 SCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK 234 (612)
Q Consensus 163 ~~l~~spdg~~l~~~~---g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~ 234 (612)
..++++|++..|+.+. +.|..+|+........+.+.......+++.. + .++.+....+.|..++..+++.
T Consensus 169 nglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~-~lywtd~~~~~V~~~~~~~G~~ 241 (318)
T 3sov_A 169 NGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-D-ILYWTDWSTHSILACNKYTGEG 241 (318)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-T-EEEEEETTTTEEEEEETTTCCS
T ss_pred cEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-C-EEEEEecCCCeEEEEECCCCCc
Confidence 8999999887777765 7999999875433222333344566777753 3 3444444678888888876653
No 279
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.82 E-value=0.00096 Score=74.51 Aligned_cols=183 Identities=10% Similarity=0.095 Sum_probs=104.0
Q ss_pred CcEEEEEE-CCCc----EEEEEcCCC-eEEEEeccCCCCCeEEEEEecCCCEEEEEecC-----CcEEEEECCCCce--e
Q 007234 86 SSLLVLGT-GGGD----VLALAVSAG-QLKWRLSDCHPGGVSAISFATHGSCIYSAGAD-----GMVCEIDPLTGSL--L 152 (612)
Q Consensus 86 ~~~l~~gs-~~g~----I~vwd~~~~-~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~d-----g~v~iwd~~~~~~--~ 152 (612)
++.|+.+. .+|. |+++|+.++ +.+.... .....++.|+|||+.|+....| ..|+.+++.+++. .
T Consensus 186 G~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~---~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~ 262 (751)
T 2xe4_A 186 HDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKV---SGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDV 262 (751)
T ss_dssp TCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCE---EEECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCE
T ss_pred CCEEEEEEeCCCCceEEEEEEECCCCCEeCCccc---cCceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcE
Confidence 66666544 3443 999999998 6321111 1123468899999888777665 3688889887642 2
Q ss_pred EEEec-CCCCeeEEEECCCCCEEEEeC-----CeEEEEEcCCC--ee-EEEE-ecCCCCEEEEEEeeCCcEEEEEEcCC-
Q 007234 153 GKFRA-STKGISCMAVSSDGKMLATAA-----GQLKTFNCSDH--KK-MQKF-SGHPGAVRFMTFSDNGKYVLSSAVGE- 221 (612)
Q Consensus 153 ~~~~~-~~~~v~~l~~spdg~~l~~~~-----g~i~lwd~~~~--~~-~~~~-~~h~~~v~~l~~sp~~~~l~s~s~~d- 221 (612)
..+.. .......+.|+|||++|+... ..|+++|+.++ +. +..+ .+......++.|+. |..|+..+..+
T Consensus 263 lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~-g~~l~~~t~~~~ 341 (751)
T 2xe4_A 263 CLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHG-TSHLVILTNEGG 341 (751)
T ss_dssp EEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEET-TTEEEEEECTTT
T ss_pred EEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeee-CCEEEEEeCCCC
Confidence 33332 223467889999999988654 47999999875 22 1333 33445555555544 55444444333
Q ss_pred ---CeEEEEEcCCCcccccee-eEeecCCceeEEeEEecCCccCCCCcEEEEEecCCc--EEEEEC
Q 007234 222 ---RYIALWRTDGVKKQSASC-VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGV--CYIWYG 281 (612)
Q Consensus 222 ---~~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~--i~iwd~ 281 (612)
..|..+++.++... .. +.. ......+..+.+ .++.++++...+|. |.++++
T Consensus 342 a~~~~L~~~d~~~~~~~--~~~li~-~~~~~~l~~~~~------~~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 342 AVNHKLLIAPRGQPSDW--SHVLVD-HSEDVFMESIAV------RSNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp CTTCEEEEEETTSTTCC--CCEEEC-CCSSEEEEEEEE------CSSEEEEEEEETTEEEEEEEEC
T ss_pred CCCcEEEEEcCCCcccc--eeeEEC-CCCCcEEEEEEE------ECCEEEEEEEeCCEEEEEEEec
Confidence 25666776542111 11 111 122223333333 23455666677885 555564
No 280
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.82 E-value=0.0031 Score=62.11 Aligned_cols=190 Identities=13% Similarity=0.241 Sum_probs=117.7
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEEC-
Q 007234 16 ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG- 94 (612)
Q Consensus 16 dg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~- 94 (612)
...+++.....+-+.+||+ +|+.++.+.. +....+-..+. + ....+. -.++++...
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~--------------~-~l~g~~-----~dla~as~R~ 95 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYD--------------F-PLNGKK-----VDIAAASNRS 95 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEE--------------E-EETTEE-----EEEEEEEECS
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecc--------------c-ccCCce-----EeEEEEeCCC
Confidence 3456666666788999999 8999888752 11111111111 0 000000 112333333
Q ss_pred --CCcEEEEEc--CCCeEEEEecc-----CCC-CCeEEEEE--ecC-CC-EEEEEecCCcEEEEECC-------CCceeE
Q 007234 95 --GGDVLALAV--SAGQLKWRLSD-----CHP-GGVSAISF--ATH-GS-CIYSAGADGMVCEIDPL-------TGSLLG 153 (612)
Q Consensus 95 --~g~I~vwd~--~~~~~~~~~~~-----~h~-~~V~~l~~--sp~-~~-~l~s~s~dg~v~iwd~~-------~~~~~~ 153 (612)
+++|.+|++ .++. +..+.. +.. ..+.++|+ +|. ++ ++++...+|.+..|++. +++.++
T Consensus 96 ~~~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR 174 (355)
T 3amr_A 96 EGKNTIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVR 174 (355)
T ss_dssp TTCCEEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEE
T ss_pred CCCCeEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEE
Confidence 356999966 4444 333311 022 56778888 664 44 58888889999999882 346677
Q ss_pred EEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcC-----CCeeEEEEe-cC-CCCEEEEEEe--eCCc-EEEEEEcCC
Q 007234 154 KFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCS-----DHKKMQKFS-GH-PGAVRFMTFS--DNGK-YVLSSAVGE 221 (612)
Q Consensus 154 ~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~-----~~~~~~~~~-~h-~~~v~~l~~s--p~~~-~l~s~s~~d 221 (612)
+|.. ...+..+...+....|+.+. .-|..++.+ +++.+..+. ++ ...+..|++. ++++ +|++++..+
T Consensus 175 ~f~l-gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~ 253 (355)
T 3amr_A 175 AFKM-NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGN 253 (355)
T ss_dssp EEEC-SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGG
T ss_pred EecC-CCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCC
Confidence 7775 35788999999888888887 347777754 355665552 22 2468888885 4555 777777678
Q ss_pred CeEEEEEcC
Q 007234 222 RYIALWRTD 230 (612)
Q Consensus 222 ~~i~vwd~~ 230 (612)
.+..+||..
T Consensus 254 ~s~~Vydr~ 262 (355)
T 3amr_A 254 SSYAIYDRQ 262 (355)
T ss_dssp TEEEEEESS
T ss_pred CEEEEEECC
Confidence 899999986
No 281
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.81 E-value=0.0048 Score=63.87 Aligned_cols=189 Identities=12% Similarity=0.093 Sum_probs=105.0
Q ss_pred EEEEcCC--CCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCc
Q 007234 10 LTSFSPA--LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (612)
Q Consensus 10 ~~~fspd--g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (612)
.++|+|+ +..|..+...+.|+.+|..+++...... ... ....+++.+. +.
T Consensus 143 gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~-~~~------------------~P~giavd~d---------G~ 194 (433)
T 4hw6_A 143 RMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT-NIG------------------QCADVNFTLN---------GD 194 (433)
T ss_dssp EEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC-CCS------------------CEEEEEECTT---------CC
T ss_pred eEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec-CCC------------------CccEEEECCC---------CC
Confidence 4599995 3344444333899999998887654432 111 1223333332 55
Q ss_pred EEEEEECCC----c-EEEEEcCCCeEEEEeccCCCCCeEEEEEec-CCCEEEEEecCCcEEEEECCCCceeEEE-ecCC-
Q 007234 88 LLVLGTGGG----D-VLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKF-RAST- 159 (612)
Q Consensus 88 ~l~~gs~~g----~-I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp-~~~~l~s~s~dg~v~iwd~~~~~~~~~~-~~~~- 159 (612)
|+++...+ . +..++...+........ .-....+++++| +|..+++-..++.|+.+|..++.....+ ....
T Consensus 195 -lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~ 272 (433)
T 4hw6_A 195 -MVVVDDQSSDTNTGIYLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTK 272 (433)
T ss_dssp -EEEEECCSCTTSEEEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCC
T ss_pred -EEEEcCCCCcccceEEEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCC
Confidence 44444322 1 33333332211001111 223456788999 6655555556788999998877663332 2222
Q ss_pred CCeeEEEECCCCCEEEEeC---CeEEEEEcC--CCee--EEEEecC---------------CCCEEEEEE---------e
Q 007234 160 KGISCMAVSSDGKMLATAA---GQLKTFNCS--DHKK--MQKFSGH---------------PGAVRFMTF---------S 208 (612)
Q Consensus 160 ~~v~~l~~spdg~~l~~~~---g~i~lwd~~--~~~~--~~~~~~h---------------~~~v~~l~~---------s 208 (612)
.....++|+|+|+.|+.+. +.|+.+++. ++.. ...+.+. -.....+++ .
T Consensus 273 ~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd 352 (433)
T 4hw6_A 273 GSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEE 352 (433)
T ss_dssp SSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSS
T ss_pred CCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccC
Confidence 2335799999999666655 689998865 3321 1223222 123567888 5
Q ss_pred eCCcEEEEEEcCCCeEEEEEc
Q 007234 209 DNGKYVLSSAVGERYIALWRT 229 (612)
Q Consensus 209 p~~~~l~s~s~~d~~i~vwd~ 229 (612)
++|.++++ ....+.|+.++.
T Consensus 353 ~~g~lyva-D~~n~~I~~~~~ 372 (433)
T 4hw6_A 353 DEYDFYFC-DRDSHTVRVLTP 372 (433)
T ss_dssp CCEEEEEE-ETTTTEEEEECT
T ss_pred CCCcEEEE-ECCCCEEEEECC
Confidence 66655444 445778888874
No 282
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=97.81 E-value=0.024 Score=63.55 Aligned_cols=242 Identities=12% Similarity=0.075 Sum_probs=137.6
Q ss_pred ccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccccc
Q 007234 5 NIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (612)
Q Consensus 5 ~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (612)
.|+++ ...++|.+.+. ..+ -|.+||..+++.......... . .......+.++.-..
T Consensus 212 ~i~~i--~~d~~g~lwig-t~~-Gl~~~d~~~~~~~~~~~~~~~-~----------~~l~~~~i~~i~~d~--------- 267 (781)
T 3v9f_A 212 DVRCI--YKDTNGNIWIG-TSK-GLALFNANTETFTNFHNNPGN-I----------HGALSSYIFSIKQLK--------- 267 (781)
T ss_dssp SEEEE--EECTTCCEEEE-ETT-EEEEEETTTTEEEC----------------------CCCCEEEEEECT---------
T ss_pred ceeEE--EEcCCCCEEEE-eCC-cHheECCCCCcEEEEEcCCCc-c----------ccccCceEEEEEECC---------
Confidence 45444 77788876554 344 488899877654421110000 0 000011222222211
Q ss_pred CCcEEEEEECCCcEEEEEcCCCeEEEEec-------------cCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCce
Q 007234 85 GSSLLVLGTGGGDVLALAVSAGQLKWRLS-------------DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL 151 (612)
Q Consensus 85 ~~~~l~~gs~~g~I~vwd~~~~~~~~~~~-------------~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~ 151 (612)
...+.+|+..+-|.++|..++....... .-....|.++...++|. |..|+.++-|..++...+..
T Consensus 268 -~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~ 345 (781)
T 3v9f_A 268 -DNKLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTF 345 (781)
T ss_dssp -TSEEEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSC
T ss_pred -CCCEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcc
Confidence 4567888887779999998776432110 11245799999888775 77788778899999765543
Q ss_pred eEEEec----------CCCCeeEEEECCCCCEEEEeC-CeEEEEEcCCCeeEEEE---ecCCCCEEEEEEeeCCcEEEEE
Q 007234 152 LGKFRA----------STKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKF---SGHPGAVRFMTFSDNGKYVLSS 217 (612)
Q Consensus 152 ~~~~~~----------~~~~v~~l~~spdg~~l~~~~-g~i~lwd~~~~~~~~~~---~~h~~~v~~l~~sp~~~~l~s~ 217 (612)
.. +.. ....|.++...++|.+.+... +-|..||..+++...-. ......|.++...++|...+ +
T Consensus 346 ~~-~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-g 423 (781)
T 3v9f_A 346 HT-WSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-G 423 (781)
T ss_dssp EE-EC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEE-E
T ss_pred ee-eccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-E
Confidence 22 211 234699999999888777663 67888998765432111 12346788888888887555 4
Q ss_pred EcCCCeEEEEEcCCCccccceeeEee-cCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcce
Q 007234 218 AVGERYIALWRTDGVKKQSASCVLAM-EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE 286 (612)
Q Consensus 218 s~~d~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~ 286 (612)
+ .++-+..++..+++.. .+.. ......+..+... ++|. |..++. +-|..||..+++.
T Consensus 424 t-~~~Gl~~~~~~~~~~~----~~~~~~~~~~~v~~i~~d-----~~g~-lwigt~-~Gl~~~~~~~~~~ 481 (781)
T 3v9f_A 424 T-YLGNISYYNTRLKKFQ----IIELEKNELLDVRVFYED-----KNKK-IWIGTH-AGVFVIDLASKKV 481 (781)
T ss_dssp E-TTEEEEEECSSSCEEE----ECCSTTTCCCCEEEEEEC-----TTSE-EEEEET-TEEEEEESSSSSC
T ss_pred e-ccCCEEEEcCCCCcEE----EeccCCCCCCeEEEEEEC-----CCCC-EEEEEC-CceEEEeCCCCeE
Confidence 4 4566888887765422 0111 1122334444443 5555 455555 5688899876543
No 283
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.81 E-value=0.0075 Score=61.67 Aligned_cols=146 Identities=7% Similarity=-0.088 Sum_probs=91.5
Q ss_pred CcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEec--CCcEEEEECCCCceeEEEecCCCCee
Q 007234 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA--DGMVCEIDPLTGSLLGKFRASTKGIS 163 (612)
Q Consensus 86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~--dg~v~iwd~~~~~~~~~~~~~~~~v~ 163 (612)
+.+.++-...+.|.+.++........+ ...-....++++.|.+..|+.+.. .+.|...++........+...-....
T Consensus 171 ~~lY~~d~~~~~I~~~~~~g~~~~~l~-~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~ 249 (400)
T 3p5b_L 171 SNIYWTDSVLGTVSVADTKGVKRKTLF-RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPN 249 (400)
T ss_dssp TEEEEEETTTTEEEEECTTTCSEEEEE-ECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEE
T ss_pred CceEEEECCCCeEEEEeCCCCceEEEE-eCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceE
Confidence 444455555677888888765543232 223455789999997666665542 47899999864433333333345789
Q ss_pred EEEECCCCCEEEEeC---CeEEEEEcCCCeeEEEEec--CCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCcc
Q 007234 164 CMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSG--HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK 234 (612)
Q Consensus 164 ~l~~spdg~~l~~~~---g~i~lwd~~~~~~~~~~~~--h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~ 234 (612)
.|+++|++..|+.+. +.|..+|+........... .-.....+++. +..++.+....+.|..++..+++.
T Consensus 250 glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~--~~~lywtd~~~~~V~~~~~~~G~~ 323 (400)
T 3p5b_L 250 GITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSD 323 (400)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE--TTEEEEEESSSCSEEEEESSSCCC
T ss_pred EEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe--CCEEEEecCCCCeEEEEEcCCCCc
Confidence 999999888887776 6899999875443222232 22345566663 334444444567788888666653
No 284
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.79 E-value=0.0004 Score=76.35 Aligned_cols=227 Identities=6% Similarity=-0.078 Sum_probs=122.8
Q ss_pred EEEcCCCCEEEEEeC-CCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEE
Q 007234 11 TSFSPALDYFAICSG-DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (612)
Q Consensus 11 ~~fspdg~~las~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (612)
+++.++|++++.|+. ++.+.+||..+++-...-. ....+...+....+ + ++++
T Consensus 248 ~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~-----------------~~~~R~~~s~~~~~-d--------g~iy 301 (656)
T 1k3i_A 248 ISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPD-----------------MQVARGYQSSATMS-D--------GRVF 301 (656)
T ss_dssp EEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCC-----------------CSSCCSSCEEEECT-T--------SCEE
T ss_pred ccCCCCCCEEEeCCCCCCceEEecCcCCceeECCC-----------------CCccccccceEEec-C--------CeEE
Confidence 578899999999985 5689999998775433210 00011111111111 1 6778
Q ss_pred EEEE-CC-----CcEEEEEcCCCeEEEEe----ccCCCCCeEEEEEecCCCEEEEEecC---------CcEEEEECCCCc
Q 007234 90 VLGT-GG-----GDVLALAVSAGQLKWRL----SDCHPGGVSAISFATHGSCIYSAGAD---------GMVCEIDPLTGS 150 (612)
Q Consensus 90 ~~gs-~~-----g~I~vwd~~~~~~~~~~----~~~h~~~V~~l~~sp~~~~l~s~s~d---------g~v~iwd~~~~~ 150 (612)
++|+ .+ .++.+||+.++.-...- ....... ....+..++..++.++.+ ..+..||..+..
T Consensus 302 v~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~-~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~ 380 (656)
T 1k3i_A 302 TIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTAD-KQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSG 380 (656)
T ss_dssp EECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCC-TTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTC
T ss_pred EEeCcccCCcccccceEeCCCCCcceeCCCcccccccccc-ccceeecCCceEEEECCCCcEEEecCccceeeeecCCcc
Confidence 8887 34 45999999987754210 0000000 001122344444555444 456788887765
Q ss_pred eeEEEecCC---------CCeeEEEEC-CCCCEEEEeC--C-----------eEEEEEcCCCeeEEEE--ecCCCC-EEE
Q 007234 151 LLGKFRAST---------KGISCMAVS-SDGKMLATAA--G-----------QLKTFNCSDHKKMQKF--SGHPGA-VRF 204 (612)
Q Consensus 151 ~~~~~~~~~---------~~v~~l~~s-pdg~~l~~~~--g-----------~i~lwd~~~~~~~~~~--~~h~~~-v~~ 204 (612)
......... ..-.++.+. .++++++.|+ + .+.+||..+.+..... ..+... -.+
T Consensus 381 w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~ 460 (656)
T 1k3i_A 381 DVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHT 460 (656)
T ss_dssp EEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCE
T ss_pred eeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCC
Confidence 433322111 122444443 3777877776 1 6888898877654332 112222 234
Q ss_pred EEEeeCCcEEEEEEcCC----------CeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEec
Q 007234 205 MTFSDNGKYVLSSAVGE----------RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE 272 (612)
Q Consensus 205 l~~sp~~~~l~s~s~~d----------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~ 272 (612)
++..|+++.++.+|..+ ..+.+||..+.+-. .+.....+.....+.... ++|+.++.|+.
T Consensus 461 ~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~---~~~~~~~~R~~hs~a~ll-----~dg~v~v~GG~ 530 (656)
T 1k3i_A 461 SVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFY---KQNPNSIVRVYHSISLLL-----PDGRVFNGGGG 530 (656)
T ss_dssp EEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEE---ECCCCSSCCCTTEEEEEC-----TTSCEEEEECC
T ss_pred eEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCcee---ecCCCCCccccccHhhcC-----CCcEEEecCCC
Confidence 56678999888887321 46889998775422 111122222222233343 78999988885
No 285
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.76 E-value=0.00011 Score=81.32 Aligned_cols=194 Identities=7% Similarity=-0.078 Sum_probs=108.9
Q ss_pred EEEEEECCCcEEEEEcCCC---eEEEEeccCCCCCeEEEEEecCCCEE-EEEecCCcEEEEECCCCceeEEEecCCCCee
Q 007234 88 LLVLGTGGGDVLALAVSAG---QLKWRLSDCHPGGVSAISFATHGSCI-YSAGADGMVCEIDPLTGSLLGKFRASTKGIS 163 (612)
Q Consensus 88 ~l~~gs~~g~I~vwd~~~~---~~~~~~~~~h~~~V~~l~~sp~~~~l-~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~ 163 (612)
++++-...+.|+.+++.+. .....+.........++++.+.+..| ++-...+.|.++++........+........
T Consensus 420 Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~ 499 (699)
T 1n7d_A 420 IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPR 499 (699)
T ss_dssp EEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCC
T ss_pred EEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcc
Confidence 3333345567888888751 11112211122345678888654444 4445678899999865543333333334568
Q ss_pred EEEECCCCCEEEEeC----CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCcccccee
Q 007234 164 CMAVSSDGKMLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC 239 (612)
Q Consensus 164 ~l~~spdg~~l~~~~----g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~ 239 (612)
.|+++|.+.+|+.+. +.|+.+++........+...-.....|+|+|++..|+.+....+.|.++++...... .
T Consensus 500 giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~---~ 576 (699)
T 1n7d_A 500 AIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK---T 576 (699)
T ss_dssp CEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCE---E
T ss_pred eEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceE---E
Confidence 899999766666554 578887775432211122223345689999987766666656788999998754322 1
Q ss_pred eEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceeccc
Q 007234 240 VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT 290 (612)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~ 290 (612)
+............+.+. .+ .++++....+.|..++..+++.+..+
T Consensus 577 ~~~~~~~~~~P~glavd-----~~-~lywtd~~~~~V~~~d~~~G~~~~~i 621 (699)
T 1n7d_A 577 ILEDEKRLAHPFSLAVF-----ED-KVFWTDIINEAIFSANRLTGSDVNLL 621 (699)
T ss_dssp ECCCSSSCSSCCCCEEE-----TT-EEEEECSTTTCEEEEETTTEEEEECC
T ss_pred EEecCCcCCCceEeEEE-----CC-EEEEEeCCCCeEEEEEccCCCceEEe
Confidence 11111100111122222 32 44555556789999998888776544
No 286
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.75 E-value=0.018 Score=56.79 Aligned_cols=202 Identities=14% Similarity=0.204 Sum_probs=117.9
Q ss_pred EEEeeec-ccccccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecC----CCE--EEEEe--c--C
Q 007234 70 CMKWLSV-DRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATH----GSC--IYSAG--A--D 138 (612)
Q Consensus 70 ~~~w~~~-~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~----~~~--l~s~s--~--d 138 (612)
-..|..+ ++. ..+++.....+-+.+||+ +|+.+..+.. +.++.+..-|+ |+. ++.++ . +
T Consensus 29 pavw~~~~dp~------~s~ii~t~k~~gL~Vydl-~G~~l~~~~~---g~~nnVD~r~~~~l~g~~~dla~as~R~~~~ 98 (355)
T 3amr_A 29 PAIWLDPKTPQ------NSKLITTNKKSGLVVYSL-DGKMLHSYNT---GKLNNVDIRYDFPLNGKKVDIAAASNRSEGK 98 (355)
T ss_dssp EEEECCSSCGG------GCEEEEEETTTEEEEEET-TSCEEEEECC---SCEEEEEEEEEEEETTEEEEEEEEEECSTTC
T ss_pred ccEecCCCCCC------ccEEEEEcCCCCEEEEcC-CCcEEEEccC---CCcccEEEecccccCCceEeEEEEeCCCCCC
Confidence 3567633 333 456666667778999999 8888877632 56777777663 222 33333 3 5
Q ss_pred CcEEEEEC--CCCceeEEEec------CC-CCeeEEEE--CCC-CC-EEEEeC--CeEEEEEcC-------CCeeEEEEe
Q 007234 139 GMVCEIDP--LTGSLLGKFRA------ST-KGISCMAV--SSD-GK-MLATAA--GQLKTFNCS-------DHKKMQKFS 196 (612)
Q Consensus 139 g~v~iwd~--~~~~~~~~~~~------~~-~~v~~l~~--spd-g~-~l~~~~--g~i~lwd~~-------~~~~~~~~~ 196 (612)
++|.+|++ .++. +..+.. .. ..+..+|+ +|. ++ ++++.. |.+..|++. +.+.+++|.
T Consensus 99 n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~ 177 (355)
T 3amr_A 99 NTIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK 177 (355)
T ss_dssp CEEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE
T ss_pred CeEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec
Confidence 78999966 3443 444421 11 45677888 774 54 455555 888888872 346678886
Q ss_pred cCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeec--CCceeEEeEEecCCccCCCCc-EEEEEec-
Q 007234 197 GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME--HPAVFMDCRCIDNGGVDDAGL-YVLAISE- 272 (612)
Q Consensus 197 ~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~l~t~s~- 272 (612)
. .+.+-.+...+....|+.+- ++.-|..++.+.........+.... +-...+..+.+.. .++++ +|++++.
T Consensus 178 l-gsq~EgcvvDd~~g~Lyv~e-Ed~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~---~~~g~gyLivSsQG 252 (355)
T 3amr_A 178 M-NSQTEGMAADDEYGRLYIAE-EDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYY---AADGKGYLMASSQG 252 (355)
T ss_dssp C-SSCEEEEEEETTTTEEEEEE-TTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEE---CGGGCEEEEEEEGG
T ss_pred C-CCCcceEEEcCCCCeEEEec-ccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEe---cCCCCEEEEEEcCC
Confidence 4 45678888888877888875 6766655564422211111222221 1111233333310 14444 6777774
Q ss_pred CCcEEEEECC-Cccee
Q 007234 273 TGVCYIWYGQ-NIEEL 287 (612)
Q Consensus 273 dg~i~iwd~~-~~~~~ 287 (612)
++...+||.+ +.+.+
T Consensus 253 ~~s~~Vydr~~~~~~v 268 (355)
T 3amr_A 253 NSSYAIYDRQGKNKYV 268 (355)
T ss_dssp GTEEEEEESSTTCCEE
T ss_pred CCEEEEEECCCCCcEE
Confidence 6799999986 44443
No 287
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.70 E-value=0.0092 Score=61.67 Aligned_cols=141 Identities=11% Similarity=0.139 Sum_probs=92.2
Q ss_pred cEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecC-C----cEEEEECCCCcee--EEEecCC
Q 007234 87 SLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD-G----MVCEIDPLTGSLL--GKFRAST 159 (612)
Q Consensus 87 ~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~d-g----~v~iwd~~~~~~~--~~~~~~~ 159 (612)
..|+++...+.|+.+|+.++...... . ......+++|+++|+.|+.+... + .+..++. .+... ..+.. .
T Consensus 150 g~Lyv~d~~~~I~~id~~~~~v~~~~-~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~~~~~~~l~~-~ 225 (430)
T 3tc9_A 150 NHLYLVGEQHPTRLIDFEKEYVSTVY-S-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESGFKVITELTK-G 225 (430)
T ss_dssp EEEEEEEBTEEEEEEETTTTEEEEEE-C-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGTSCSEEEEEE-C
T ss_pred CeEEEEeCCCcEEEEECCCCEEEEEe-c-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCceeeeeeecc-C
Confidence 34566655577999999887764333 2 44568999999999977766542 2 3444443 33222 23332 3
Q ss_pred CCeeEEEECC-CCCEEEEeC--CeEEEEEcCCCeeEEEEe-cCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCC
Q 007234 160 KGISCMAVSS-DGKMLATAA--GQLKTFNCSDHKKMQKFS-GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (612)
Q Consensus 160 ~~v~~l~~sp-dg~~l~~~~--g~i~lwd~~~~~~~~~~~-~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~ 231 (612)
.....++++| +|.++++-. +.|+.++..++....... +.......++|+|+|++|+.+....+.|..++.+.
T Consensus 226 ~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 226 QNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp SSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence 3457889999 666655543 799999998776422222 12234678999999997776665678999988764
No 288
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.62 E-value=0.018 Score=64.10 Aligned_cols=144 Identities=7% Similarity=-0.085 Sum_probs=91.1
Q ss_pred cEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEec--CCcEEEEECCCCceeEEEecCCCCeeE
Q 007234 87 SLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA--DGMVCEIDPLTGSLLGKFRASTKGISC 164 (612)
Q Consensus 87 ~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~--dg~v~iwd~~~~~~~~~~~~~~~~v~~ 164 (612)
.++++-...+.|.+.++...... .+....-....+|++.|.+..|+.+.. .+.|...++........+...-.....
T Consensus 484 ~LY~tD~~~~~I~v~~ldG~~~~-~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~G 562 (791)
T 3m0c_C 484 NIYWTDSVLGTVSVADTKGVKRK-TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNG 562 (791)
T ss_dssp EEEEEETTTTEEEEEETTSSSEE-EEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEE
T ss_pred cEEEEecCCCeEEEEeCCCCeEE-EEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceE
Confidence 44455555677999998755443 333334456899999997666666543 368999998644443334434457899
Q ss_pred EEECCCCCEEEEeC---CeEEEEEcCCCeeEEEEecC--CCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCc
Q 007234 165 MAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGH--PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (612)
Q Consensus 165 l~~spdg~~l~~~~---g~i~lwd~~~~~~~~~~~~h--~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~ 233 (612)
|++++.+..|+.+. +.|..+++........+.+. -....+|++. +.+|+.+....+.|...+..+++
T Consensus 563 LavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~tG~ 634 (791)
T 3m0c_C 563 ITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGS 634 (791)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCC
T ss_pred EEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCCCc
Confidence 99998877777766 68999998655443333332 2234455553 34566555456777777766654
No 289
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.61 E-value=0.0098 Score=61.49 Aligned_cols=141 Identities=11% Similarity=0.121 Sum_probs=88.4
Q ss_pred cEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCC-----cEEEEECCCCce-eEEEecCCC
Q 007234 87 SLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADG-----MVCEIDPLTGSL-LGKFRASTK 160 (612)
Q Consensus 87 ~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg-----~v~iwd~~~~~~-~~~~~~~~~ 160 (612)
..|+++...+.|+.+|+.++...... .......+++|+++|+ |+.+...+ .+...+...+.. ...+. ...
T Consensus 153 g~Lyv~D~~~~I~~id~~~g~v~~~~--~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~-~~~ 228 (433)
T 4hw6_A 153 DDLYWVGQRDAFRHVDFVNQYVDIKT--TNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGFTERLSLC-NAR 228 (433)
T ss_dssp CEEEEECBTSCEEEEETTTTEEEEEC--CCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTTCCEEEEE-ECS
T ss_pred CEEEEEeCCCCEEEEECCCCEEEEee--cCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCeecccccc-ccC
Confidence 34555555588999999888775333 2445689999999999 55554322 233333222211 11222 234
Q ss_pred CeeEEEECC-CCCEEEEeC--CeEEEEEcCCCeeEEEEe--cCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCC
Q 007234 161 GISCMAVSS-DGKMLATAA--GQLKTFNCSDHKKMQKFS--GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (612)
Q Consensus 161 ~v~~l~~sp-dg~~l~~~~--g~i~lwd~~~~~~~~~~~--~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~ 231 (612)
....++++| +|.+.++-. +.|+.+|..++.....+. +....-..++|+|++++|+.+....+.|..++.+.
T Consensus 229 ~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~ 304 (433)
T 4hw6_A 229 GAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNR 304 (433)
T ss_dssp SBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCT
T ss_pred CCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCC
Confidence 557789999 666555443 789999998776533332 12222346999999997777665678899988763
No 290
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.59 E-value=0.042 Score=53.15 Aligned_cols=192 Identities=11% Similarity=0.098 Sum_probs=120.7
Q ss_pred CcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCC-CceeEEEecCC----C
Q 007234 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT-GSLLGKFRAST----K 160 (612)
Q Consensus 86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~-~~~~~~~~~~~----~ 160 (612)
...+++-. ...+.+||+++.+.+..+. ....|.--.|-.+... +-.+ +..|+-|++.. ..+.+.|..|. .
T Consensus 78 ~~ViALra-g~~LQiFnletK~klks~~--~~e~VvfWkWis~~~L-~lVT-~taVyHWs~~~~s~P~kvFdR~~~L~~~ 152 (365)
T 2xzh_A 78 SKVIALKA-GKTLQIFNIEMKSKMKAHT--MTDDVTFWKWISLNTV-ALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGC 152 (365)
T ss_dssp SSEEEEEE-TTEEEEEETTTTEEEEEEE--CSSCEEEEEECSSSEE-EEEE-SSEEEEEESSTTCCCEEEEECCGGGTTC
T ss_pred ccEEEEec-CCeEEEechHHhhhhccee--cCCccEEEEecCCCeE-EEEc-CCcEEEEcccCCCCCceeeecchhcccc
Confidence 45566655 5669999999999887764 3457777777654433 3332 46799999874 35666666553 3
Q ss_pred CeeEEEECCCCCEEEEeC---------CeEEEEEcCCCeeEEEEecCCCCEEEEEEe--eCCcEEEEEEcC---CCeEEE
Q 007234 161 GISCMAVSSDGKMLATAA---------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFS--DNGKYVLSSAVG---ERYIAL 226 (612)
Q Consensus 161 ~v~~l~~spdg~~l~~~~---------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~s--p~~~~l~s~s~~---d~~i~v 226 (612)
.|..-..+++.++++..+ |.+.+|..+.+ .-+.+.||...-..+.+. +....|++-+.. .+.+.+
T Consensus 153 QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhI 231 (365)
T 2xzh_A 153 QIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHI 231 (365)
T ss_dssp EEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEE
T ss_pred eEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccc-ccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEE
Confidence 677788899999887654 68999998765 345677886544333221 111223332211 257888
Q ss_pred EEcCCC---ccc-ccee---eEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceec
Q 007234 227 WRTDGV---KKQ-SASC---VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR 288 (612)
Q Consensus 227 wd~~~~---~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~ 288 (612)
-++... ... ..+. .+..+....+.-....+ +.-..+...+.-|.|++||++++..+.
T Consensus 232 iEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs-----~kygviyviTK~G~ihlyDleTgt~i~ 295 (365)
T 2xzh_A 232 IEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQIS-----EKHDVVFLITKYGYIHLYDLETGTCIY 295 (365)
T ss_dssp EECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEE-----TTTTEEEEEETTSEEEEEETTTCCEEE
T ss_pred EEcCCCCCCCCCcccccceeeCCccccCCceEEEEec-----ccCCEEEEEeCCcEEEEEEcccCcEEE
Confidence 888543 111 0111 11112234444455555 566788889999999999999998875
No 291
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.53 E-value=0.019 Score=56.11 Aligned_cols=202 Identities=13% Similarity=0.159 Sum_probs=119.7
Q ss_pred EEEEcCCCCEEEEEe-CCCcEEEEECCCCcEEEE-eeccCCccccccccccccccccccceeEEEeeecccccccccCCc
Q 007234 10 LTSFSPALDYFAICS-GDARIKIWDTLKGQVQTE-FADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (612)
Q Consensus 10 ~~~fspdg~~las~s-~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (612)
+++|++....|..++ ..|+|..||...+..... +.+.. ..+........+.|...++. +.
T Consensus 17 ~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s------------~~g~~~~~~sGl~~~~~D~~------gr 78 (334)
T 2p9w_A 17 DTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGAS------------SNGDGEQQMSGLSLLTHDNS------KR 78 (334)
T ss_dssp CEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTC------------CSSCCSEEEEEEEESSSSSC------CE
T ss_pred CccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCcc------------ccCCCcceeeEEEEeccCCC------Cc
Confidence 348988555555555 689999999976654433 11100 00111122356667421221 55
Q ss_pred EEEEEEC-------------CCcEEEEEcC---CCeEEEEecc-----C-------CCCCeEEEEEecCCCEEEEEecC-
Q 007234 88 LLVLGTG-------------GGDVLALAVS---AGQLKWRLSD-----C-------HPGGVSAISFATHGSCIYSAGAD- 138 (612)
Q Consensus 88 ~l~~gs~-------------~g~I~vwd~~---~~~~~~~~~~-----~-------h~~~V~~l~~sp~~~~l~s~s~d- 138 (612)
++++... +..|..||+. +++.++...- + -.....+++..++|+..++++.-
T Consensus 79 L~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~ 158 (334)
T 2p9w_A 79 LFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGM 158 (334)
T ss_dssp EEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESS
T ss_pred EEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCC
Confidence 6665432 4559999999 7776654421 1 11358899999999999999888
Q ss_pred CcEEEEECCCCceeEEEec------CCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCee--EEEEe--cC---CCCEE
Q 007234 139 GMVCEIDPLTGSLLGKFRA------STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKK--MQKFS--GH---PGAVR 203 (612)
Q Consensus 139 g~v~iwd~~~~~~~~~~~~------~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~--~~~~~--~h---~~~v~ 203 (612)
+.|...+.. |+.+..+.. .....+.|+++|+|+.|++.. |.+..+|+.+... +. .. |. -....
T Consensus 159 ~~I~rV~pd-G~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~-~~~~G~~~~~~~~d 236 (334)
T 2p9w_A 159 PAIARVSAD-GKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEP-VKINGDFGTLSGTE 236 (334)
T ss_dssp CEEEEECTT-SCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEE-CEESSCCCCCTTEE
T ss_pred CeEEEEeCC-CCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeec-ccccCCcccccCcc
Confidence 888888865 333333321 112477999999999888876 8999999885432 21 11 32 12234
Q ss_pred EE-EEeeCCcEEEEEEcCCCeEEEEEcCC
Q 007234 204 FM-TFSDNGKYVLSSAVGERYIALWRTDG 231 (612)
Q Consensus 204 ~l-~~sp~~~~l~s~s~~d~~i~vwd~~~ 231 (612)
.| ..-.+|+.++.+....+.+.+.+.+.
T Consensus 237 gilp~~~~G~vllV~~~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 237 KIVTVPVGNESVLVGARAPYAISFRSWDN 265 (334)
T ss_dssp EEEEEEETTEEEEEEEETTEEEEEECSST
T ss_pred cccccccCCEEEEEEcCCCCEEEEECCCC
Confidence 43 33357777555543455555555444
No 292
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.50 E-value=0.028 Score=58.49 Aligned_cols=152 Identities=11% Similarity=0.154 Sum_probs=85.8
Q ss_pred EEEEcC-CC-CEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEe-------eeccccc
Q 007234 10 LTSFSP-AL-DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKW-------LSVDRKK 80 (612)
Q Consensus 10 ~~~fsp-dg-~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w-------~~~~~~~ 80 (612)
.++|+| ++ +++++-...+.|++.|..++.+.......... ......++| .+.
T Consensus 143 ~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~---------------~~~p~~ia~~~~~~~~d~~---- 203 (496)
T 3kya_A 143 RLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIP---------------TNRIRSIAFNKKIEGYADE---- 203 (496)
T ss_dssp EEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSS---------------CSBEEEEEECCCBTTTBCT----
T ss_pred EEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccc---------------cCCCcEEEEeecccccCCC----
Confidence 459999 34 44444444577999999887766544321100 112233444 222
Q ss_pred ccccCCcEEEEEECCC-c------EEEEEcCC-CeEE-----EEeccCCCCCeEEEEEecCCCEEE-EEecCCcEEEEEC
Q 007234 81 KRKLGSSLLVLGTGGG-D------VLALAVSA-GQLK-----WRLSDCHPGGVSAISFATHGSCIY-SAGADGMVCEIDP 146 (612)
Q Consensus 81 ~~~~~~~~l~~gs~~g-~------I~vwd~~~-~~~~-----~~~~~~h~~~V~~l~~sp~~~~l~-s~s~dg~v~iwd~ 146 (612)
+..++++...+ . |.+++... +... ..+.. -....+++++|++..|+ +-..++.|..+|+
T Consensus 204 -----G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~--~~~p~giavdp~~g~LYvtd~~~g~V~r~d~ 276 (496)
T 3kya_A 204 -----AEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAA--YKQCNGATIHPINGELYFNSYEKGQVFRLDL 276 (496)
T ss_dssp -----TCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEE--ESCCCCEEECTTTCCEEEEETTTTEEEEECH
T ss_pred -----CCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeecc--CCCceEEEEcCCCCeEEEEECCCCEEEEEec
Confidence 55566665554 2 66665443 1221 11111 12345778899555544 5557788999998
Q ss_pred C-------CCce-----------eEE-Eec-CCCCeeEEEECCCCCEEEEeC---CeEEEEEcC
Q 007234 147 L-------TGSL-----------LGK-FRA-STKGISCMAVSSDGKMLATAA---GQLKTFNCS 187 (612)
Q Consensus 147 ~-------~~~~-----------~~~-~~~-~~~~v~~l~~spdg~~l~~~~---g~i~lwd~~ 187 (612)
. ++.. ... +.. .......|+|+|+|++|+.+. +.|+.++..
T Consensus 277 ~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 277 VDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp HHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred ccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence 7 5543 122 222 223568999999999766654 788886653
No 293
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.44 E-value=0.025 Score=55.18 Aligned_cols=153 Identities=8% Similarity=0.025 Sum_probs=102.4
Q ss_pred eeEEEeeecccccccccCCcEEEEEE-CCCcEEEEEcCCCeEEEEeccC----CC--CCeEEEEE---ecCCCEEEEEe-
Q 007234 68 YTCMKWLSVDRKKKRKLGSSLLVLGT-GGGDVLALAVSAGQLKWRLSDC----HP--GGVSAISF---ATHGSCIYSAG- 136 (612)
Q Consensus 68 ~~~~~w~~~~~~~~~~~~~~~l~~gs-~~g~I~vwd~~~~~~~~~~~~~----h~--~~V~~l~~---sp~~~~l~s~s- 136 (612)
..+..|... ...+.+++ ..|.|..|++..+........+ .. ..+.++.| .|+++++++..
T Consensus 15 PE~~~wd~~---------~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~ 85 (334)
T 2p9w_A 15 PEDTIYDRT---------RQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKN 85 (334)
T ss_dssp CSCEEEETT---------TTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEE
T ss_pred CcCccCcCC---------CCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcc
Confidence 346677655 34455555 7899999999866544333222 11 14689999 68877666543
Q ss_pred ------------cCCcEEEEECC---CCceeEEEec-------------CCCCeeEEEECCCCCEEEEeC---CeEEEEE
Q 007234 137 ------------ADGMVCEIDPL---TGSLLGKFRA-------------STKGISCMAVSSDGKMLATAA---GQLKTFN 185 (612)
Q Consensus 137 ------------~dg~v~iwd~~---~~~~~~~~~~-------------~~~~v~~l~~spdg~~l~~~~---g~i~lwd 185 (612)
.+..|..+|+. +++.+....- ....+..++..++|+..++++ +.|..++
T Consensus 86 ~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~ 165 (334)
T 2p9w_A 86 AKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVS 165 (334)
T ss_dssp TTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEEC
T ss_pred cccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEe
Confidence 16779999998 7877665441 112588999999999988776 5666666
Q ss_pred cCCCeeEEEEecC------CCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCC
Q 007234 186 CSDHKKMQKFSGH------PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (612)
Q Consensus 186 ~~~~~~~~~~~~h------~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~ 231 (612)
.... .+..+... ....+.|+++|+|+.|++... .+.+..+|+..
T Consensus 166 pdG~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~-~g~L~~fD~~~ 215 (334)
T 2p9w_A 166 ADGK-TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG-PRALTAFDVSK 215 (334)
T ss_dssp TTSC-CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS-SSSEEEEECSS
T ss_pred CCCC-EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC-CCeEEEEcCCC
Confidence 6543 22222111 112568999999999988874 89999999884
No 294
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.44 E-value=0.017 Score=56.15 Aligned_cols=184 Identities=10% Similarity=0.049 Sum_probs=92.9
Q ss_pred CcEEEEEECC-----CcEEEEEcCCCe---EEEEec-cCCCCCeEEEEEecCCCEEEEEecC-----CcEEEEECCCCce
Q 007234 86 SSLLVLGTGG-----GDVLALAVSAGQ---LKWRLS-DCHPGGVSAISFATHGSCIYSAGAD-----GMVCEIDPLTGSL 151 (612)
Q Consensus 86 ~~~l~~gs~~-----g~I~vwd~~~~~---~~~~~~-~~h~~~V~~l~~sp~~~~l~s~s~d-----g~v~iwd~~~~~~ 151 (612)
+.+++.|+.+ ..+.+||+.+++ -...-. ......-..+.+ +++.++.|+.+ ..+.+||+.+.+-
T Consensus 63 ~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W 140 (301)
T 2vpj_A 63 DRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQW 140 (301)
T ss_dssp TEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred CEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeE
Confidence 5667777755 359999998876 321110 111111122222 56666666643 3688999887653
Q ss_pred eEE--EecCCCCeeEEEECCCCCEEEEeC-------CeEEEEEcCCCeeEEEEecCCCC-EEEEEEeeCCcEEEEEEcC-
Q 007234 152 LGK--FRASTKGISCMAVSSDGKMLATAA-------GQLKTFNCSDHKKMQKFSGHPGA-VRFMTFSDNGKYVLSSAVG- 220 (612)
Q Consensus 152 ~~~--~~~~~~~v~~l~~spdg~~l~~~~-------g~i~lwd~~~~~~~~~~~~h~~~-v~~l~~sp~~~~l~s~s~~- 220 (612)
... +........++.+ ++++++.|+ ..+.+||+.+.+-... .....+ ....+..-+++.++.+|..
T Consensus 141 ~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~-~~~p~~r~~~~~~~~~~~i~v~GG~~~ 217 (301)
T 2vpj_A 141 SMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNV-TPMATKRSGAGVALLNDHIYVVGGFDG 217 (301)
T ss_dssp EEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEEE-CCCSSCCBSCEEEEETTEEEEECCBCS
T ss_pred EECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEeC-CCCCcccccceEEEECCEEEEEeCCCC
Confidence 332 2211222222222 677777765 4699999988754322 111111 1111222356666666532
Q ss_pred ---CCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecC-----CcEEEEECCCc
Q 007234 221 ---ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET-----GVCYIWYGQNI 284 (612)
Q Consensus 221 ---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~d-----g~i~iwd~~~~ 284 (612)
...+.+||+.+..-. .+..+..+.....++. -+++.++.|+.+ ..+.+||.++.
T Consensus 218 ~~~~~~v~~yd~~~~~W~---~~~~~p~~r~~~~~~~-------~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 218 TAHLSSVEAYNIRTDSWT---TVTSMTTPRCYVGATV-------LRGRLYAIAGYDGNSLLSSIECYDPIID 279 (301)
T ss_dssp SSBCCCEEEEETTTTEEE---EECCCSSCCBSCEEEE-------ETTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred CcccceEEEEeCCCCcEE---ECCCCCCcccceeEEE-------ECCEEEEEcCcCCCcccccEEEEcCCCC
Confidence 246888998876532 1211221111112222 245666666654 35677777654
No 295
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.40 E-value=0.043 Score=59.45 Aligned_cols=188 Identities=9% Similarity=-0.003 Sum_probs=109.5
Q ss_pred EEEEEE-CCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEE-ecCCcEEEEECCCCceeEEEecCCCCeeEE
Q 007234 88 LLVLGT-GGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSA-GADGMVCEIDPLTGSLLGKFRASTKGISCM 165 (612)
Q Consensus 88 ~l~~gs-~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~-s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l 165 (612)
.|+.+. ..+.|..+++........+....-....++++.+.++.|+.+ ...+.|.+.++........+...-.....|
T Consensus 53 ~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~I 132 (619)
T 3s94_A 53 LIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAI 132 (619)
T ss_dssp EEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCE
T ss_pred EEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceE
Confidence 344444 456688888876532222222223568999999966655554 467899999986543333333344467899
Q ss_pred EECCCCCEEEEeC----CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeE
Q 007234 166 AVSSDGKMLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVL 241 (612)
Q Consensus 166 ~~spdg~~l~~~~----g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~ 241 (612)
+++|.+..|+.+. +.|...++............-.....+++.+++..|+.+-...+.|...+++...... ...
T Consensus 133 avdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~--~~~ 210 (619)
T 3s94_A 133 ALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQA--VVK 210 (619)
T ss_dssp EEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC------
T ss_pred EEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEE--EEe
Confidence 9999766665554 4777777764433333333445678999999877777776567788888887654331 111
Q ss_pred -eecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCccee
Q 007234 242 -AMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL 287 (612)
Q Consensus 242 -~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~ 287 (612)
.+.++. .+++. .+ ...++-...+.|...|..+++..
T Consensus 211 ~~~~~P~----gi~~~-----~~-~ly~td~~~~~V~~~d~~tg~~~ 247 (619)
T 3s94_A 211 GSLPHPF----ALTLF-----ED-ILYWTDWSTHSILACNKYTGEGL 247 (619)
T ss_dssp -----CC----CEEES-----SS-EEEEECTTTCSEEEEESSSCCCC
T ss_pred CCCCCce----EEEEe-----CC-EEEEecCCCCEEEEEECCCCccc
Confidence 122222 22232 33 44444455778999998777544
No 296
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.40 E-value=0.11 Score=52.34 Aligned_cols=192 Identities=11% Similarity=0.104 Sum_probs=121.3
Q ss_pred CcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCC-CceeEEEecCC----C
Q 007234 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT-GSLLGKFRAST----K 160 (612)
Q Consensus 86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~-~~~~~~~~~~~----~ 160 (612)
...+++=. ...+.|||+++.+.+..+. ....|.--.|-.+. .|+-. .+..|+-|++.. ..+.+.|..|. .
T Consensus 77 ~~iiALra-g~~lQiFnle~K~klks~~--~~e~VvfWkWis~~-~l~lV-T~taVyHWsi~~~s~P~kvFdR~~~L~~~ 151 (494)
T 1bpo_A 77 SKVIALKA-GKTLQIFNIEMKSKMKAHT--MTDDVTFWKWISLN-TVALV-TDNAVYHWSMEGESQPVKMFDRHSSLAGC 151 (494)
T ss_dssp SSCEEEEE-TTEEEEEETTTTEEEEEEE--CSSCCCEEEEEETT-EEEEE-CSSEEEEEESSSSCCCEEEEECCGGGTTC
T ss_pred CcEEEEec-CCeEEEEchHHhhhhccee--cCCCceEEEecCCC-eEEEE-cCCeeEEecccCCCCchhheecchhcccc
Confidence 44555554 6669999999998887664 23466666675544 33333 256799999864 35666666553 3
Q ss_pred CeeEEEECCCCCEEEEeC---------CeEEEEEcCCCeeEEEEecCCCCEEEEEEee--CCcEEEEEEcC---CCeEEE
Q 007234 161 GISCMAVSSDGKMLATAA---------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSD--NGKYVLSSAVG---ERYIAL 226 (612)
Q Consensus 161 ~v~~l~~spdg~~l~~~~---------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp--~~~~l~s~s~~---d~~i~v 226 (612)
.|..-..++++++++..+ |.+.+|..+.+ .-+.+.||...-..+.+.. ....+++-+.. .+.+.|
T Consensus 152 QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi 230 (494)
T 1bpo_A 152 QIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHI 230 (494)
T ss_dssp EEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEE
T ss_pred eEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEE
Confidence 677888899999988544 68999998765 3466788865544433321 11223332222 268889
Q ss_pred EEcCCC---ccc-ccee---eEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceec
Q 007234 227 WRTDGV---KKQ-SASC---VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR 288 (612)
Q Consensus 227 wd~~~~---~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~ 288 (612)
-++... ... .... .+..+....+.-....+ +.-..+...+.-|.|++||++++..+.
T Consensus 231 ~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs-----~kygviyviTK~G~i~lyDleTgt~i~ 294 (494)
T 1bpo_A 231 IEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQIS-----EKHDVVFLITKYGYIHLYDLETGTCIY 294 (494)
T ss_dssp EECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEE-----TTTTEEEEEETTSEEEEEETTTCCEEE
T ss_pred EEcCCCccCCCCccceeeeeeCCcccccCceeEEEec-----ccCCEEEEEecCceEEEEecccceeee
Confidence 888543 111 0001 11112334444455555 666788899999999999999998875
No 297
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.32 E-value=0.2 Score=54.18 Aligned_cols=228 Identities=6% Similarity=-0.036 Sum_probs=135.3
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEECCCcE
Q 007234 19 YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDV 98 (612)
Q Consensus 19 ~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I 98 (612)
+|..+ ..+.|+..++.+......+.. .. -.....+.|.+.+ +.++++-..++.|
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~----------------~~-~~~~~~l~~d~~~--------~~lywtD~~~~~I 61 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVAIPL----------------TG-VKEASALDFDVTD--------NRIYWTDISLKTI 61 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEECCC----------------CS-CSCEEEEEEETTT--------TEEEEEETTTTEE
T ss_pred EEEEE-eCCcEEEEECCCCCcceEEEc----------------CC-CCceEEEEEECCC--------CEEEEEECCCCeE
Confidence 45444 456788889876554332210 00 1123345555543 4444455566778
Q ss_pred EEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEE-ecCCcEEEEECCCCceeEEEecCCCCeeEEEECCCCCEEEEe
Q 007234 99 LALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSA-GADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATA 177 (612)
Q Consensus 99 ~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~-s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~ 177 (612)
..+++........+ ........++++.+.+..|+.+ ...+.|.+.++........+...-.....|+++|....|+.+
T Consensus 62 ~r~~~~g~~~~~v~-~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~t 140 (628)
T 4a0p_A 62 SRAFMNGSALEHVV-EFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWT 140 (628)
T ss_dssp EEEETTSCSCEEEE-CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEE
T ss_pred EEEECCCCCcEEEE-eCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEe
Confidence 88888765443222 2222457799998766655544 456789999986544333333344567999999965555554
Q ss_pred C----CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeE
Q 007234 178 A----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCR 253 (612)
Q Consensus 178 ~----g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (612)
. +.|...++........+ ..-.....+++.+++..|+.+-...+.|...++...... . .. ....... .+
T Consensus 141 D~g~~~~I~r~~~dG~~~~~l~-~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~---v-~~-~~l~~P~-gl 213 (628)
T 4a0p_A 141 EWGGKPKIDRAAMDGSERTTLV-PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNRE---V-IA-DDLPHPF-GL 213 (628)
T ss_dssp ECSSSCEEEEEETTSCSCEEEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE---E-EE-ECCSCEE-EE
T ss_pred CCCCCCEEEEEeCCCCceEEEE-CCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceE---E-ee-ccCCCce-EE
Confidence 4 57888888655433323 344567899999988878777667789999998765432 1 11 1112222 23
Q ss_pred EecCCccCCCCcEEEEEecCCcEEEEECCCcce
Q 007234 254 CIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE 286 (612)
Q Consensus 254 ~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~ 286 (612)
++. . +...++-...+.|...|..+++.
T Consensus 214 av~-----~-~~ly~tD~~~~~I~~~dk~tg~~ 240 (628)
T 4a0p_A 214 TQY-----Q-DYIYWTDWSRRSIERANKTSGQN 240 (628)
T ss_dssp EEE-----T-TEEEEEETTTTEEEEEETTTCCS
T ss_pred EEE-----C-CEEEEecCCCCEEEEEECCCCCc
Confidence 332 3 34445545577888888766643
No 298
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.21 E-value=0.12 Score=50.91 Aligned_cols=177 Identities=12% Similarity=0.157 Sum_probs=96.9
Q ss_pred EEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEE-EEC--CCCceeEEEecCCCCeeEE
Q 007234 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCE-IDP--LTGSLLGKFRASTKGISCM 165 (612)
Q Consensus 89 l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~i-wd~--~~~~~~~~~~~~~~~v~~l 165 (612)
+++++.+|.|.. ....|+.-......+...+.++.+.|++.+++.+ .+|.+.. +|- .+.+.+. ......+..+
T Consensus 135 ~~~~~~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g-~~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~ 210 (327)
T 2xbg_A 135 AEMITNVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVS-SRGSFYSTWEPGQTAWEPHN--RTTSRRLHNM 210 (327)
T ss_dssp EEEEETTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEE-TTSSEEEEECTTCSSCEEEE--CCSSSCEEEE
T ss_pred EEEEeCCccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEE-CCCcEEEEeCCCCCceeECC--CCCCCcccee
Confidence 344445665422 2223332222333456689999999988777665 4555444 442 2223321 2234578899
Q ss_pred EECCCCCEEEEeC-CeEEEEEcCCCeeEEEEec----CCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceee
Q 007234 166 AVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSG----HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV 240 (612)
Q Consensus 166 ~~spdg~~l~~~~-g~i~lwd~~~~~~~~~~~~----h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~ 240 (612)
.+.+++++++++. |.+++.+...++.-..+.. +...+..+.+.+++..++++ .++.+ .+..+.++.- ..+
T Consensus 211 ~~~~~g~~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g--~~g~i-~~S~DgG~tW--~~~ 285 (327)
T 2xbg_A 211 GFTPDGRLWMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAG--GAGAL-LCSQDGGQTW--QQD 285 (327)
T ss_dssp EECTTSCEEEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEE--STTCE-EEESSTTSSC--EEC
T ss_pred EECCCCCEEEEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEe--CCCeE-EEeCCCCccc--EEc
Confidence 9999999888877 8887765333443333321 22358889999888766654 36766 4455544321 111
Q ss_pred Eee-cCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEEC
Q 007234 241 LAM-EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (612)
Q Consensus 241 ~~~-~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~ 281 (612)
... ..+... ..+.+. ++ ..+++++.+|.|.-++-
T Consensus 286 ~~~~~~~~~~-~~v~~~-----~~-~~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 286 VDVKKVPSNF-YKILFF-----SP-DQGFILGQKGILLRYVT 320 (327)
T ss_dssp GGGTTSSSCC-CEEEEE-----ET-TEEEEECSTTEEEEECC
T ss_pred CccCCCCCCe-EEEEEE-----CC-CceEEEcCCceEEEEcC
Confidence 100 112223 334443 33 44677778898777653
No 299
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.21 E-value=0.0011 Score=73.18 Aligned_cols=144 Identities=8% Similarity=-0.079 Sum_probs=83.6
Q ss_pred CcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEec--CCcEEEEECCCCceeEEE-ecCCCCe
Q 007234 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA--DGMVCEIDPLTGSLLGKF-RASTKGI 162 (612)
Q Consensus 86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~--dg~v~iwd~~~~~~~~~~-~~~~~~v 162 (612)
+.++++-...+.|.++++...... .+.........++++.|.+..|+.+.. .+.|..+++... ....+ ...-...
T Consensus 465 g~LY~tD~~~~~I~v~d~dg~~~~-~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~-~~~~l~~~~l~~P 542 (699)
T 1n7d_A 465 SNIYWTDSVLGTVSVADTKGVKRK-TLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQWP 542 (699)
T ss_dssp SBCEECCTTTSCEEEEBSSSCCEE-EECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSC-CCCEESCSSCSSC
T ss_pred CcEEEEeccCCeEEEEecCCCceE-EEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCC-CeeEEEeCCCCCc
Confidence 334444455677999998765443 332222345678899996665555443 267888887533 22232 2223456
Q ss_pred eEEEECCCCCEEEEeC---CeEEEEEcCCCeeEEEEec--CCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCc
Q 007234 163 SCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSG--HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (612)
Q Consensus 163 ~~l~~spdg~~l~~~~---g~i~lwd~~~~~~~~~~~~--h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~ 233 (612)
..|+|+|++..|+.+. +.|..+|+........+.. .-.....|++..+ .++.+....+.|..++..+++
T Consensus 543 nGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~--~lywtd~~~~~V~~~d~~~G~ 616 (699)
T 1n7d_A 543 NGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED--KVFWTDIINEAIFSANRLTGS 616 (699)
T ss_dssp CCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT--EEEEECSTTTCEEEEETTTEE
T ss_pred cEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC--EEEEEeCCCCeEEEEEccCCC
Confidence 7899999877666655 6899999865432222221 1122334555433 444444456788888876664
No 300
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.19 E-value=0.07 Score=51.91 Aligned_cols=184 Identities=11% Similarity=0.071 Sum_probs=93.3
Q ss_pred CcEEEEEECC----CcEEEEEcCCCeEEEEec-cCCCCCeEEEEEecCCCEEEEEecC------CcEEEEECCCCceeEE
Q 007234 86 SSLLVLGTGG----GDVLALAVSAGQLKWRLS-DCHPGGVSAISFATHGSCIYSAGAD------GMVCEIDPLTGSLLGK 154 (612)
Q Consensus 86 ~~~l~~gs~~----g~I~vwd~~~~~~~~~~~-~~h~~~V~~l~~sp~~~~l~s~s~d------g~v~iwd~~~~~~~~~ 154 (612)
+.+++.|+.+ ..+.+||+.+++-...-. ......-..+.+ +++.++.|+.+ ..+.+||..+.+-...
T Consensus 56 ~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~ 133 (306)
T 3ii7_A 56 NVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTK 133 (306)
T ss_dssp TEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEE
T ss_pred CEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeC
Confidence 5667777654 458999999886432211 111111122222 56677777655 4688999887653322
Q ss_pred --EecCCCCeeEEEECCCCCEEEEeC-----------CeEEEEEcCCCeeEEEEecCCCC-EEEEEEeeCCcEEEEEEcC
Q 007234 155 --FRASTKGISCMAVSSDGKMLATAA-----------GQLKTFNCSDHKKMQKFSGHPGA-VRFMTFSDNGKYVLSSAVG 220 (612)
Q Consensus 155 --~~~~~~~v~~l~~spdg~~l~~~~-----------g~i~lwd~~~~~~~~~~~~h~~~-v~~l~~sp~~~~l~s~s~~ 220 (612)
+........++. -++++++.|+ ..+.+||+.+.+-.. +.....+ .......-+++.++.+|..
T Consensus 134 ~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~-~~~~p~~r~~~~~~~~~~~i~v~GG~~ 210 (306)
T 3ii7_A 134 PSMLTQRCSHGMVE--ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTE-LCPMIEARKNHGLVFVKDKIFAVGGQN 210 (306)
T ss_dssp CCCSSCCBSCEEEE--ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEE-ECCCSSCCBSCEEEEETTEEEEECCEE
T ss_pred CCCcCCcceeEEEE--ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEE-CCCccchhhcceEEEECCEEEEEeCCC
Confidence 111111222222 2667777765 248899998875432 2211111 1111122256666665521
Q ss_pred C----CeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecC-----CcEEEEECCCc
Q 007234 221 E----RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET-----GVCYIWYGQNI 284 (612)
Q Consensus 221 d----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~d-----g~i~iwd~~~~ 284 (612)
. ..+.+||+.+..-. .+..+..+.....++. -+++.++.|+.+ ..+.+||..+.
T Consensus 211 ~~~~~~~~~~yd~~~~~W~---~~~~~p~~r~~~~~~~-------~~~~i~v~GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 211 GLGGLDNVEYYDIKLNEWK---MVSPMPWKGVTVKCAA-------VGSIVYVLAGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp TTEEBCCEEEEETTTTEEE---ECCCCSCCBSCCEEEE-------ETTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred CCCCCceEEEeeCCCCcEE---ECCCCCCCccceeEEE-------ECCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence 1 35788898776422 1111221111112222 245677777654 45777887654
No 301
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.18 E-value=0.17 Score=54.81 Aligned_cols=185 Identities=13% Similarity=0.037 Sum_probs=112.7
Q ss_pred cEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEE-ecCCcEEEEECCCCceeEEEecCCCCeeEE
Q 007234 87 SLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSA-GADGMVCEIDPLTGSLLGKFRASTKGISCM 165 (612)
Q Consensus 87 ~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~-s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l 165 (612)
.+|+. +..+.|+..++.+......+....-..+.+++|++.+..++.+ ..++.|+.+++........+......+..+
T Consensus 7 ~~Ll~-s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~Gl 85 (628)
T 4a0p_A 7 AFLLF-SRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGM 85 (628)
T ss_dssp CEEEE-EETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEE
T ss_pred cEEEE-EeCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceE
Confidence 34444 3667899999987654333322234568899999976665554 467899999987554444444333467889
Q ss_pred EECCCCCEEEEeC---CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcC-CCeEEEEEcCCCccccceeeE
Q 007234 166 AVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVG-ERYIALWRTDGVKKQSASCVL 241 (612)
Q Consensus 166 ~~spdg~~l~~~~---g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~-d~~i~vwd~~~~~~~~~~~~~ 241 (612)
++.+.+..|+.+. +.|.+.++........+...-.....|++.|...+|+.+... .+.|...+++..... .+.
T Consensus 86 AvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~---~l~ 162 (628)
T 4a0p_A 86 AVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERT---TLV 162 (628)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE---EEE
T ss_pred EEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceE---EEE
Confidence 9988766665554 789999987553322232334556899999865556655412 457777777665432 111
Q ss_pred eecCCceeEEeEEecCCccCCCCcEEEEE-ecCCcEEEEECCC
Q 007234 242 AMEHPAVFMDCRCIDNGGVDDAGLYVLAI-SETGVCYIWYGQN 283 (612)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~l~t~-s~dg~i~iwd~~~ 283 (612)
..-.....++++ +++..|..+ ...+.|..+|+..
T Consensus 163 ---~~~~~P~GlalD-----~~~~~LY~aD~~~~~I~~~d~dG 197 (628)
T 4a0p_A 163 ---PNVGRANGLTID-----YAKRRLYWTDLDTNLIESSNMLG 197 (628)
T ss_dssp ---CSCSSEEEEEEE-----TTTTEEEEEETTTTEEEEEETTS
T ss_pred ---CCCCCcceEEEc-----cccCEEEEEECCCCEEEEEcCCC
Confidence 122233455555 554444444 3455677777643
No 302
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.17 E-value=0.074 Score=51.64 Aligned_cols=184 Identities=11% Similarity=0.052 Sum_probs=92.9
Q ss_pred CcEEEEEECCC-----cEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCC-----cEEEEECCCCceeEE-
Q 007234 86 SSLLVLGTGGG-----DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADG-----MVCEIDPLTGSLLGK- 154 (612)
Q Consensus 86 ~~~l~~gs~~g-----~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg-----~v~iwd~~~~~~~~~- 154 (612)
+.+++.|+.++ .+.+||+.+++-...-.......-.+++. -+++.++.|+.++ .+.+||+.+.+-...
T Consensus 62 ~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~ 140 (302)
T 2xn4_A 62 GLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAV-LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVA 140 (302)
T ss_dssp TEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEEC
T ss_pred CEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEE-ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecC
Confidence 56677776543 48999998876432211111111112222 2566777777553 578889877653322
Q ss_pred -EecCCCCeeEEEECCCCCEEEEeC---------CeEEEEEcCCCeeEEE--EecCCCCEEEEEEeeCCcEEEEEEcC--
Q 007234 155 -FRASTKGISCMAVSSDGKMLATAA---------GQLKTFNCSDHKKMQK--FSGHPGAVRFMTFSDNGKYVLSSAVG-- 220 (612)
Q Consensus 155 -~~~~~~~v~~l~~spdg~~l~~~~---------g~i~lwd~~~~~~~~~--~~~h~~~v~~l~~sp~~~~l~s~s~~-- 220 (612)
+........++.+ ++++++.|+ ..+.+||+.+.+-... ++...... +++ .-+++.++.+|..
T Consensus 141 ~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~-~~~~~iyv~GG~~~~ 216 (302)
T 2xn4_A 141 PMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGA-GVG-VLNNLLYAVGGHDGP 216 (302)
T ss_dssp CCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSC-EEE-EETTEEEEECCBSSS
T ss_pred CCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccc-cEE-EECCEEEEECCCCCC
Confidence 1111112222222 567777665 2588999988754322 11111111 222 2356666666532
Q ss_pred --CCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCC-----cEEEEECCCc
Q 007234 221 --ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG-----VCYIWYGQNI 284 (612)
Q Consensus 221 --d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg-----~i~iwd~~~~ 284 (612)
...+.+||+.+..-. .+..+........++ . -+++.++.|+.++ .+.+||..+.
T Consensus 217 ~~~~~~~~yd~~~~~W~---~~~~~~~~r~~~~~~-~------~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 217 LVRKSVEVYDPTTNAWR---QVADMNMCRRNAGVC-A------VNGLLYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp SBCCCEEEEETTTTEEE---EECCCSSCCBSCEEE-E------ETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred cccceEEEEeCCCCCEe---eCCCCCCccccCeEE-E------ECCEEEEECCcCCCcccccEEEEcCCCC
Confidence 136888998776432 111121111111112 1 3456777776543 4788887654
No 303
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.17 E-value=0.096 Score=52.11 Aligned_cols=176 Identities=12% Similarity=0.123 Sum_probs=102.0
Q ss_pred CCCcEEEEEcCC--CeEE-EEecc----CCCCCeEEEEEec--CCC-EEEEEec---CCcEEEEECCCC-c---eeEEEe
Q 007234 94 GGGDVLALAVSA--GQLK-WRLSD----CHPGGVSAISFAT--HGS-CIYSAGA---DGMVCEIDPLTG-S---LLGKFR 156 (612)
Q Consensus 94 ~~g~I~vwd~~~--~~~~-~~~~~----~h~~~V~~l~~sp--~~~-~l~s~s~---dg~v~iwd~~~~-~---~~~~~~ 156 (612)
.+|.|.++|+.+ ++.. ..+.. ...-...++.+.+ ++. +|+.+.. +.+|.+|++..+ . .+..+.
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~ 160 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR 160 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence 689999999974 2321 12211 1234678888877 354 4555532 467778776543 2 233344
Q ss_pred cCC-CCeeEEEECCCCCEEEEeC-------------------CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEE
Q 007234 157 AST-KGISCMAVSSDGKMLATAA-------------------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLS 216 (612)
Q Consensus 157 ~~~-~~v~~l~~spdg~~l~~~~-------------------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s 216 (612)
+.. ...+.+.+.++|.+.++.. |.|+-+|. ++. ..+...-...+.++|+||++.++.
T Consensus 161 g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~-~~~~~~l~~pNGia~spDg~~lYv 237 (355)
T 3sre_A 161 HKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDV-RVVAEGFDFANGINISPDGKYVYI 237 (355)
T ss_dssp CTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCC-EEEEEEESSEEEEEECTTSSEEEE
T ss_pred cCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--CeE-EEeecCCcccCcceECCCCCEEEE
Confidence 322 3688999999999877753 34544554 332 222222345689999999998888
Q ss_pred EEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCC-CCcEEEEEecCC-cEEEEE
Q 007234 217 SAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDD-AGLYVLAISETG-VCYIWY 280 (612)
Q Consensus 217 ~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~t~s~dg-~i~iwd 280 (612)
+.+..+.|..|++..........++. .......++.. + +|++.+++..+| .|..|+
T Consensus 238 adt~~~~I~~~~~~~~g~l~~~~~~~---~~g~PDGi~vD-----~e~G~lwva~~~~g~~v~~~~ 295 (355)
T 3sre_A 238 AELLAHKIHVYEKHANWTLTPLRVLS---FDTLVDNISVD-----PVTGDLWVGCHPNGMRIFFYD 295 (355)
T ss_dssp EEGGGTEEEEEEECTTSCEEEEEEEE---CSSEEEEEEEC-----TTTCCEEEEEESCHHHHHSCC
T ss_pred EeCCCCeEEEEEECCCCcEecCEEEe---CCCCCceEEEe-----CCCCcEEEEecCCceEEEEEC
Confidence 77678899999987432221111221 13344555564 6 477666555442 444443
No 304
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.05 E-value=0.058 Score=58.38 Aligned_cols=196 Identities=11% Similarity=-0.018 Sum_probs=108.7
Q ss_pred eEEEEcCCCCEEEEEeC-CCcEEEEECCCCcE-EEEeeccCCccccccccccccccccccceeEEEeeecccccccccCC
Q 007234 9 ILTSFSPALDYFAICSG-DARIKIWDTLKGQV-QTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGS 86 (612)
Q Consensus 9 l~~~fspdg~~las~s~-dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 86 (612)
+.++|++.+..|..+.. .++|..++...... ...+..... ....-.+.|. . +
T Consensus 43 ~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~----------------~P~GlAvD~~--~--------~ 96 (619)
T 3s94_A 43 AAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLL----------------SPDGLACDWL--G--------E 96 (619)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCS----------------CEEEEEEETT--T--------T
T ss_pred EEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCC----------------CcCeEEEEec--C--------C
Confidence 35689987666655543 57788888765432 112211001 1112222222 1 3
Q ss_pred cEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEec--CCcEEEEECCCCceeEEEecCCCCeeE
Q 007234 87 SLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA--DGMVCEIDPLTGSLLGKFRASTKGISC 164 (612)
Q Consensus 87 ~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~--dg~v~iwd~~~~~~~~~~~~~~~~v~~ 164 (612)
.+.++-...+.|.+.++...... .+....-....++++.|.+..|+.+.. .+.|...++............-.....
T Consensus 97 ~ly~~d~~~~~I~v~~~dG~~~~-~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~G 175 (619)
T 3s94_A 97 KLYWTDSETNRIEVSNLDGSLRK-VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNG 175 (619)
T ss_dssp EEEEEETTTTEEEEEETTSCSCE-EEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEE
T ss_pred EEEEEeCCCCEEEEEECCCCCEE-EEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcE
Confidence 44455555677999998765432 232234456789999997666665543 467777787543333333334456899
Q ss_pred EEECCCCCEEEEeC---CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCc
Q 007234 165 MAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (612)
Q Consensus 165 l~~spdg~~l~~~~---g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~ 233 (612)
|++++++..|+.+. +.|..+|+..........+.-.....+++..+ .++.+....+.|...|..+++
T Consensus 176 lald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~--~ly~td~~~~~V~~~d~~tg~ 245 (619)
T 3s94_A 176 LTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED--ILYWTDWSTHSILACNKYTGE 245 (619)
T ss_dssp EEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS--EEEEECTTTCSEEEEESSSCC
T ss_pred EEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC--EEEEecCCCCEEEEEECCCCc
Confidence 99999877777766 68999998765432222211122235566544 556555456778888876664
No 305
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.01 E-value=0.21 Score=49.78 Aligned_cols=199 Identities=13% Similarity=0.086 Sum_probs=98.9
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEE
Q 007234 10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (612)
Q Consensus 10 ~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (612)
.++|.|||+++++ ..+|.|+++| .+|+ ..+.... + +.. + ......+++.+.-.. +..|
T Consensus 33 ~ia~~pdG~l~V~-e~~g~I~~~d-~~G~--~~~~~~~--v----~~~----g--~~g~~gia~~pdf~~------~g~l 90 (354)
T 3a9g_A 33 SIAPLGGGRYLVT-ERPGRLVLIS-PSGK--KLVASFD--V----ANV----G--EAGLLGLALHPEFPK------KSWV 90 (354)
T ss_dssp EEEEEETTEEEEE-ETTTEEEEEC-SSCE--EEEEECC--C----CCS----T--TCSEEEEEECTTTTT------SCEE
T ss_pred EEEEcCCCeEEEE-eCCCEEEEEe-CCCc--eEeeccc--e----eec----C--CCceeeEEeCCCCCc------CCEE
Confidence 5599999985554 5569999997 4554 2222110 0 000 0 012233444432110 2234
Q ss_pred EEEEC----C----CcEEEEEcCCC-------eEEEE-eccCCCCCeEEEEEecCCCEEEEEec-------------CCc
Q 007234 90 VLGTG----G----GDVLALAVSAG-------QLKWR-LSDCHPGGVSAISFATHGSCIYSAGA-------------DGM 140 (612)
Q Consensus 90 ~~gs~----~----g~I~vwd~~~~-------~~~~~-~~~~h~~~V~~l~~sp~~~~l~s~s~-------------dg~ 140 (612)
+++.. + +.|..|+...+ +.+.. +..........+.|.|||.++++.+. .|.
T Consensus 91 yv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~ 170 (354)
T 3a9g_A 91 YLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGK 170 (354)
T ss_dssp EEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSE
T ss_pred EEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeE
Confidence 44332 2 45777776654 11111 21111112467999999986666432 246
Q ss_pred EEEEECCCCc--------eeEEEecCCCCeeEEEECC-CCCEEEEeCC-----eEEEEEcCC----------------Ce
Q 007234 141 VCEIDPLTGS--------LLGKFRASTKGISCMAVSS-DGKMLATAAG-----QLKTFNCSD----------------HK 190 (612)
Q Consensus 141 v~iwd~~~~~--------~~~~~~~~~~~v~~l~~sp-dg~~l~~~~g-----~i~lwd~~~----------------~~ 190 (612)
|..++.. ++ ....+.........++|+| +|+++++-.+ .|.+..... ..
T Consensus 171 I~ri~~d-G~~p~~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~ 249 (354)
T 3a9g_A 171 ILRVDEE-GRPPADNPFPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVD 249 (354)
T ss_dssp EEEECTT-SCCCTTSSSTTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCC
T ss_pred EEEEcCC-CCCCCCCCCCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcC
Confidence 6666654 22 1122222223457899999 6766655432 344432110 01
Q ss_pred eEEEEecCCCCEEEEEEe-------eCCcEEEEEEcCCCeEEEEEcCCC
Q 007234 191 KMQKFSGHPGAVRFMTFS-------DNGKYVLSSAVGERYIALWRTDGV 232 (612)
Q Consensus 191 ~~~~~~~h~~~v~~l~~s-------p~~~~l~s~s~~d~~i~vwd~~~~ 232 (612)
++..+.........+.|. .+|.++++. ...+.|...++...
T Consensus 250 p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~-~~~~~v~~~~~~~~ 297 (354)
T 3a9g_A 250 PVIDTGSETWAPSGASFVHGDMFPGLRGWLLIAC-LRGSMLAAVNFGDN 297 (354)
T ss_dssp CSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEE-TTTTEEEEEEECGG
T ss_pred CEeecCCCCcCCcceEEECCCCCcccCCcEEEEE-cCCCEEEEEEECCC
Confidence 223331122356788884 467655554 45677888887653
No 306
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.01 E-value=0.092 Score=52.87 Aligned_cols=148 Identities=13% Similarity=0.190 Sum_probs=95.6
Q ss_pred ecCCCEEEEEecCCcEEEEECCCCceeEEEecC----CCCeeEEEECCCCCEEEEeC-CeEEEEEcCCCe----------
Q 007234 126 ATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS----TKGISCMAVSSDGKMLATAA-GQLKTFNCSDHK---------- 190 (612)
Q Consensus 126 sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~----~~~v~~l~~spdg~~l~~~~-g~i~lwd~~~~~---------- 190 (612)
+.+|..++.+ .++.||+-++......+.++.. ...+..+..+|+|++||..+ ..|.|..+..+.
T Consensus 29 ~~n~t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~ 107 (452)
T 3pbp_A 29 SQNGTRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQD 107 (452)
T ss_dssp ETTTTEEEEE-ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHH
T ss_pred EcCCCEEEEE-ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCccccccc
Confidence 3455556655 4577887787755555555554 22678899999999999888 899999886321
Q ss_pred --eEEEEec------CCCCEEEEEEeeC---CcEEEEEEcCCCeEEEEEcCCCccccc-----eeeEeecCCceeEEeEE
Q 007234 191 --KMQKFSG------HPGAVRFMTFSDN---GKYVLSSAVGERYIALWRTDGVKKQSA-----SCVLAMEHPAVFMDCRC 254 (612)
Q Consensus 191 --~~~~~~~------h~~~v~~l~~sp~---~~~l~s~s~~d~~i~vwd~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 254 (612)
..+.+.- ...+|..+.|+|- +..|++-. .|+.|++||+........ ...+........+..++
T Consensus 108 ~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLt-sD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~ 186 (452)
T 3pbp_A 108 AFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLK-EDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLE 186 (452)
T ss_dssp TTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEE-TTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEE
T ss_pred ccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEe-cCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEE
Confidence 1223332 3578999999985 44677776 699999999987432211 01122222234556777
Q ss_pred ecCCccCCCCcEEEEEe--cCCcEEEEE
Q 007234 255 IDNGGVDDAGLYVLAIS--ETGVCYIWY 280 (612)
Q Consensus 255 ~~~~~~~~~~~~l~t~s--~dg~i~iwd 280 (612)
|. .+|-.|...+ .+|.|+-..
T Consensus 187 Fg-----~~~lTLYvl~~t~~GDIYAlc 209 (452)
T 3pbp_A 187 FS-----KDGLTLYCLNTTEGGDIFAFY 209 (452)
T ss_dssp EC-----TTSSCEEEEECTTSCEEEEES
T ss_pred Ec-----CCCcEEEEEecCCCCCEEEEC
Confidence 87 5666666655 777776543
No 307
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=96.99 E-value=0.26 Score=49.09 Aligned_cols=198 Identities=10% Similarity=0.138 Sum_probs=96.2
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEE
Q 007234 10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (612)
Q Consensus 10 ~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (612)
.++|.|||+++++ ..+|.|++++ +++.. .+.... + +... ......+++.+.-.. +..|
T Consensus 35 ~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~-~~~~~~--v----~~~g------~~~p~gia~~pdf~~------~g~l 92 (352)
T 2ism_A 35 ALAFLPDGGMLIA-ERPGRIRLFR--EGRLS-TYAELS--V----YHRG------ESGLLGLALHPRFPQ------EPYV 92 (352)
T ss_dssp EEEECTTSCEEEE-ETTTEEEEEE--TTEEE-EEEECC--C----CCST------TCSEEEEEECTTTTT------SCEE
T ss_pred EEEEcCCCeEEEE-eCCCeEEEEE--CCCcc-Eeecce--E----eecC------CCCceeEEECCCCCC------CCEE
Confidence 5599999996554 5679999998 45422 121110 0 0000 112234444432110 2334
Q ss_pred EEEEC-C-----CcEEEEEcCCCe-----EEEE-ec--cCCCCCeEEEEEecCCCEEEEEec-------------CCcEE
Q 007234 90 VLGTG-G-----GDVLALAVSAGQ-----LKWR-LS--DCHPGGVSAISFATHGSCIYSAGA-------------DGMVC 142 (612)
Q Consensus 90 ~~gs~-~-----g~I~vwd~~~~~-----~~~~-~~--~~h~~~V~~l~~sp~~~~l~s~s~-------------dg~v~ 142 (612)
+++.. . +.|..|+...+. .+.. +. .+.......++|.|+|.+.++.+. .|.|.
T Consensus 93 Yv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ 172 (352)
T 2ism_A 93 YAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKIL 172 (352)
T ss_dssp EEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEE
T ss_pred EEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEE
Confidence 44333 2 557788876442 1211 22 111122368999999976555432 25676
Q ss_pred EEECCCC------------ceeEEEecCCCCeeEEEECC-CCCEEEEeC--CeE------EEEEcCCCe-----------
Q 007234 143 EIDPLTG------------SLLGKFRASTKGISCMAVSS-DGKMLATAA--GQL------KTFNCSDHK----------- 190 (612)
Q Consensus 143 iwd~~~~------------~~~~~~~~~~~~v~~l~~sp-dg~~l~~~~--g~i------~lwd~~~~~----------- 190 (612)
.+|.... .....+.........++|+| +|++.++-. +.+ .+.-+..+.
T Consensus 173 ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~ 252 (352)
T 2ism_A 173 RLTPEGEPAPGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRG 252 (352)
T ss_dssp EECTTSSBCTTCTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCC
T ss_pred EEcCCCCCCCCCcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCC
Confidence 6765420 11112221223357889999 566555433 231 122222221
Q ss_pred -------eEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCC
Q 007234 191 -------KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (612)
Q Consensus 191 -------~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~ 232 (612)
++..+. +......++| .+|..+++ ....+.|...++...
T Consensus 253 ~~~~~~~p~~~~~-~~~ap~G~~~-~~G~l~v~-~~~~~~v~~v~~~~~ 298 (352)
T 2ism_A 253 NDPRYRDPLYFWP-QGFPPGNLAF-FRGDLYVA-GLRGQALLRLVLEGE 298 (352)
T ss_dssp CCTTSCCCSEECT-TCCCEEEEEE-ETTEEEEE-ETTTTEEEEEEEEEE
T ss_pred CCCCCcCCeEecC-CCCCCcceEE-ECCEEEEE-ECCCCEEEEEEECCC
Confidence 222332 2234567788 56765554 345677777776643
No 308
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=96.98 E-value=0.085 Score=52.04 Aligned_cols=110 Identities=12% Similarity=0.132 Sum_probs=71.1
Q ss_pred CCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecC----CCCeeEEEECCCCCEEEEeC-CeEEEEEcCCC
Q 007234 115 CHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS----TKGISCMAVSSDGKMLATAA-GQLKTFNCSDH 189 (612)
Q Consensus 115 ~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~----~~~v~~l~~spdg~~l~~~~-g~i~lwd~~~~ 189 (612)
.....+..+.+.+++..+ .++.+|.++..+...++.-..+... ...+.++.+.+++.+++++. |.+ .+..+.+
T Consensus 202 ~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i-~~S~DgG 279 (327)
T 2xbg_A 202 TTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGAGAL-LCSQDGG 279 (327)
T ss_dssp CSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEESTTCE-EEESSTT
T ss_pred CCCCccceeEECCCCCEE-EEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeCCCeE-EEeCCCC
Confidence 355678999999988654 5557888877753334333222211 23588999999999888887 766 4455556
Q ss_pred eeEEEEec---CCCCEEEEEEeeCCcEEEEEEcCCCeEEEEE
Q 007234 190 KKMQKFSG---HPGAVRFMTFSDNGKYVLSSAVGERYIALWR 228 (612)
Q Consensus 190 ~~~~~~~~---h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd 228 (612)
+.-..+.. +...+.++.|.+++. +++++ .+|.|.-++
T Consensus 280 ~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G-~~G~i~~~~ 319 (327)
T 2xbg_A 280 QTWQQDVDVKKVPSNFYKILFFSPDQ-GFILG-QKGILLRYV 319 (327)
T ss_dssp SSCEECGGGTTSSSCCCEEEEEETTE-EEEEC-STTEEEEEC
T ss_pred cccEEcCccCCCCCCeEEEEEECCCc-eEEEc-CCceEEEEc
Confidence 54444432 345678899987766 44555 588776655
No 309
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.97 E-value=0.35 Score=48.01 Aligned_cols=129 Identities=12% Similarity=0.095 Sum_probs=78.6
Q ss_pred CcEEEEEcCCC--eE--EEEeccCCCCCeEEEEEecCCCEEEEEe-----------------cCCcEEEEECCCCceeEE
Q 007234 96 GDVLALAVSAG--QL--KWRLSDCHPGGVSAISFATHGSCIYSAG-----------------ADGMVCEIDPLTGSLLGK 154 (612)
Q Consensus 96 g~I~vwd~~~~--~~--~~~~~~~h~~~V~~l~~sp~~~~l~s~s-----------------~dg~v~iwd~~~~~~~~~ 154 (612)
..|.+|++..+ .. +..+....-...+++.+.++|.+.++.. ..|.|..+|. ++ +..
T Consensus 139 s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~-~~~ 215 (355)
T 3sre_A 139 STVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--ND-VRV 215 (355)
T ss_dssp CEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TC-CEE
T ss_pred CeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--Ce-EEE
Confidence 44777776543 22 2233222234678999999998666653 1245666665 33 233
Q ss_pred EecCCCCeeEEEECCCCCEEEEeC---CeEEEEEcCC-Cee--EEEEecCCCCEEEEEEee-CCcEEEEEEcCC-CeEEE
Q 007234 155 FRASTKGISCMAVSSDGKMLATAA---GQLKTFNCSD-HKK--MQKFSGHPGAVRFMTFSD-NGKYVLSSAVGE-RYIAL 226 (612)
Q Consensus 155 ~~~~~~~v~~l~~spdg~~l~~~~---g~i~lwd~~~-~~~--~~~~~~h~~~v~~l~~sp-~~~~l~s~s~~d-~~i~v 226 (612)
+...-...+.++|+||++.|+.+. +.|+.|++.. ++. .+.+ ...+....+++.+ +|++.+++. .+ +.|..
T Consensus 216 ~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~-~~g~~v~~ 293 (355)
T 3sre_A 216 VAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCH-PNGMRIFF 293 (355)
T ss_dssp EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEE-SCHHHHHS
T ss_pred eecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEec-CCceEEEE
Confidence 332334578999999999888876 7999999863 322 2334 2345667889998 588776554 34 23444
Q ss_pred EEc
Q 007234 227 WRT 229 (612)
Q Consensus 227 wd~ 229 (612)
|+.
T Consensus 294 ~~P 296 (355)
T 3sre_A 294 YDA 296 (355)
T ss_dssp CCT
T ss_pred ECC
Confidence 443
No 310
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=96.92 E-value=0.034 Score=57.88 Aligned_cols=144 Identities=15% Similarity=0.144 Sum_probs=91.0
Q ss_pred cEEEEEECCCcEEEEEcCCCeEEEEeccC--CCCCeEEEEE-------ecCCCEEEEEecCC-------cEEEEECCC-C
Q 007234 87 SLLVLGTGGGDVLALAVSAGQLKWRLSDC--HPGGVSAISF-------ATHGSCIYSAGADG-------MVCEIDPLT-G 149 (612)
Q Consensus 87 ~~l~~gs~~g~I~vwd~~~~~~~~~~~~~--h~~~V~~l~~-------sp~~~~l~s~s~dg-------~v~iwd~~~-~ 149 (612)
.++++....+.|++.|+.++........+ .......++| +++|++|+.+...+ .|.+++... +
T Consensus 153 ~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G 232 (496)
T 3kya_A 153 HLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADG 232 (496)
T ss_dssp EEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTS
T ss_pred EEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCC
Confidence 34444444466999999988876433221 2235899999 99999777776554 266776443 2
Q ss_pred cee-----EEEecCCCCeeEEEECCCCCEEEEeC---CeEEEEEcC-------CCee-----------EEEE-e-cCCCC
Q 007234 150 SLL-----GKFRASTKGISCMAVSSDGKMLATAA---GQLKTFNCS-------DHKK-----------MQKF-S-GHPGA 201 (612)
Q Consensus 150 ~~~-----~~~~~~~~~v~~l~~spdg~~l~~~~---g~i~lwd~~-------~~~~-----------~~~~-~-~h~~~ 201 (612)
... ..+... .....++++|++..|+.+. +.|+.+|+. ++.. ...+ . +....
T Consensus 233 ~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~ 311 (496)
T 3kya_A 233 TFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSW 311 (496)
T ss_dssp CCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSC
T ss_pred ceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCC
Confidence 221 233222 2456789999655555544 789999997 5543 2222 1 22344
Q ss_pred EEEEEEeeCCcEEEEEEcCCCeEEEEEcCC
Q 007234 202 VRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (612)
Q Consensus 202 v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~ 231 (612)
...++|+|+|++|+.+-.....|+.++...
T Consensus 312 p~~ia~~p~G~~lYvaD~~~h~I~kid~dg 341 (496)
T 3kya_A 312 EFQIFIHPTGKYAYFGVINNHYFMRSDYDE 341 (496)
T ss_dssp CEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred ceEEEEcCCCCEEEEEeCCCCEEEEEecCC
Confidence 578999999997666655677888877644
No 311
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=96.86 E-value=0.38 Score=46.63 Aligned_cols=239 Identities=12% Similarity=0.118 Sum_probs=140.8
Q ss_pred cceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccC
Q 007234 6 IRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLG 85 (612)
Q Consensus 6 V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 85 (612)
+.+=++--+|..+.+|.-. ..++.|+|+++.+.+..+.- ..++.--.|.+.
T Consensus 67 i~AdsAIMnP~~~ViALra-g~~LQiFnletK~klks~~~-------------------~e~VvfWkWis~--------- 117 (365)
T 2xzh_A 67 ISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-------------------TDDVTFWKWISL--------- 117 (365)
T ss_dssp CCCSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEEC-------------------SSCEEEEEECSS---------
T ss_pred cccceeeeCCCccEEEEec-CCeEEEechHHhhhhcceec-------------------CCccEEEEecCC---------
Confidence 3333445788888888776 67899999999988877642 234555667664
Q ss_pred CcEEEEEECCCcEEEEEcCCCeEEEEeccCC----CCCeEEEEEecCCCEEEEEec-------CCcEEEEECCCCceeEE
Q 007234 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCH----PGGVSAISFATHGSCIYSAGA-------DGMVCEIDPLTGSLLGK 154 (612)
Q Consensus 86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h----~~~V~~l~~sp~~~~l~s~s~-------dg~v~iwd~~~~~~~~~ 154 (612)
+.|+..+ +..|+.|++.......+.++.| ...|..-..+++.++++..+- .|.+.+|..+.+ .-+.
T Consensus 118 -~~L~lVT-~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ 194 (365)
T 2xzh_A 118 -NTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQP 194 (365)
T ss_dssp -SEEEEEE-SSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEE
T ss_pred -CeEEEEc-CCcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccc-ccce
Confidence 3444444 3469999998654333443444 346777777888898665542 367888987644 3455
Q ss_pred EecCCCCeeEEEECC--C-CCEEEEeC-----CeEEEEEcCCC---e------eEEEEec---CCCCEEEEEEeeCCcEE
Q 007234 155 FRASTKGISCMAVSS--D-GKMLATAA-----GQLKTFNCSDH---K------KMQKFSG---HPGAVRFMTFSDNGKYV 214 (612)
Q Consensus 155 ~~~~~~~v~~l~~sp--d-g~~l~~~~-----g~i~lwd~~~~---~------~~~~~~~---h~~~v~~l~~sp~~~~l 214 (612)
+++|......+.+.- . ..+++.+. +.+++.++... . .+..+-. ...-.-++..++.-..+
T Consensus 195 ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygvi 274 (365)
T 2xzh_A 195 IEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVV 274 (365)
T ss_dssp ECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEE
T ss_pred eeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEE
Confidence 666655444433321 1 12333332 58888887432 1 1111111 12334567777766666
Q ss_pred EEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCccee
Q 007234 215 LSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL 287 (612)
Q Consensus 215 ~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~ 287 (612)
+... .-|.+.+||+.++... +...-....+-..+.. ....-+++....|.|.--.++..+.+
T Consensus 275 yviT-K~G~ihlyDleTgt~i-----~~nrIS~d~iF~ta~~-----~~~~Gi~~Vnr~GqVl~v~v~~~~iv 336 (365)
T 2xzh_A 275 FLIT-KYGYIHLYDLETGTCI-----YMNRISGETIFVTAPH-----EATAGIIGVNRKGQVLSVCVEEENII 336 (365)
T ss_dssp EEEE-TTSEEEEEETTTCCEE-----EEEECCSSCEEEEEEE-----GGGTEEEEEETTCEEEEEEECTTTHH
T ss_pred EEEe-CCcEEEEEEcccCcEE-----EEeccCCCceEEeccc-----CCCCcEEEEcCCCEEEEEEECcccEe
Confidence 6665 6899999999999744 3333222222112222 23344666667887776666555443
No 312
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=96.83 E-value=0.46 Score=55.19 Aligned_cols=141 Identities=13% Similarity=0.154 Sum_probs=86.7
Q ss_pred CcEEEEEE----------CCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEE
Q 007234 86 SSLLVLGT----------GGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKF 155 (612)
Q Consensus 86 ~~~l~~gs----------~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~ 155 (612)
..++++|+ ..|.|++|++..++..........++|++++-- +| +|++| ..++|++|++...+.++.-
T Consensus 844 ~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g-~Lla~-ig~~l~vy~l~~~~~L~~~ 920 (1158)
T 3ei3_A 844 NTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF-NG-KLLAS-INSTVRLYEWTTEKELRTE 920 (1158)
T ss_dssp CCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE-TT-EEEEE-ETTEEEEEEECTTSCEEEE
T ss_pred CEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee-CC-EEEEE-cCCEEEEEECCCCceEEEE
Confidence 57899988 346799999986654333333456889998744 45 44444 4578999999766544411
Q ss_pred ecCCCCeeEEEECCCCCEEEEeC--CeEEE--EEcCCCeeEEEE-ecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcC
Q 007234 156 RASTKGISCMAVSSDGKMLATAA--GQLKT--FNCSDHKKMQKF-SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD 230 (612)
Q Consensus 156 ~~~~~~v~~l~~spdg~~l~~~~--g~i~l--wd~~~~~~~~~~-~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~ 230 (612)
..+-..+..+.....+.++++|+ ..|.+ |+...++....- .-+...++++.|-.++. ++.+ ..+|.+.+....
T Consensus 921 ~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld~~t-~l~a-D~~gNl~vl~~~ 998 (1158)
T 3ei3_A 921 CNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDN-FLGA-ENAFNLFVCQKD 998 (1158)
T ss_dssp EEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEEECCSCBCEEEEEEEETTE-EEEE-ETTSEEEEEEEC
T ss_pred eeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEEeecccccEEEEEEEccCc-EEEE-cCCCcEEEEecC
Confidence 11111233333333578899988 45544 555455433222 23456788999887764 4444 478999988765
Q ss_pred C
Q 007234 231 G 231 (612)
Q Consensus 231 ~ 231 (612)
.
T Consensus 999 ~ 999 (1158)
T 3ei3_A 999 S 999 (1158)
T ss_dssp T
T ss_pred C
Confidence 4
No 313
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.74 E-value=0.14 Score=49.96 Aligned_cols=183 Identities=7% Similarity=-0.003 Sum_probs=90.9
Q ss_pred CcEEEEEEC----C-----CcEEEEEcCCCeEEEEec-cCCCCCeEEEEEecCCCEEEEEecC-----CcEEEEECCCCc
Q 007234 86 SSLLVLGTG----G-----GDVLALAVSAGQLKWRLS-DCHPGGVSAISFATHGSCIYSAGAD-----GMVCEIDPLTGS 150 (612)
Q Consensus 86 ~~~l~~gs~----~-----g~I~vwd~~~~~~~~~~~-~~h~~~V~~l~~sp~~~~l~s~s~d-----g~v~iwd~~~~~ 150 (612)
+.+++.|+. + ..+.+||+.+++-...-. ......-..+.+ +++.++.|+.+ ..+.+||+.+.+
T Consensus 71 ~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 148 (308)
T 1zgk_A 71 GLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDE 148 (308)
T ss_dssp TEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTE
T ss_pred CEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCe
Confidence 556666655 2 458999998876432110 101111122222 56666666543 468889987764
Q ss_pred eeEE--EecCCCCeeEEEECCCCCEEEEeC-------CeEEEEEcCCCeeEEE--EecCCCCEEEEEEeeCCcEEEEEEc
Q 007234 151 LLGK--FRASTKGISCMAVSSDGKMLATAA-------GQLKTFNCSDHKKMQK--FSGHPGAVRFMTFSDNGKYVLSSAV 219 (612)
Q Consensus 151 ~~~~--~~~~~~~v~~l~~spdg~~l~~~~-------g~i~lwd~~~~~~~~~--~~~h~~~v~~l~~sp~~~~l~s~s~ 219 (612)
-... +........++.+ ++++++.|+ ..+.+||+.+.+-... +....... +++. -+++.++.+|.
T Consensus 149 W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~ 224 (308)
T 1zgk_A 149 WHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGA-GVCV-LHNCIYAAGGY 224 (308)
T ss_dssp EEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEE-ETTEEEEECCB
T ss_pred EeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccc-eEEE-ECCEEEEEeCC
Confidence 3221 1111222223333 567777765 3689999988754221 11111111 2222 26666666653
Q ss_pred C----CCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecC-----CcEEEEECCCc
Q 007234 220 G----ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET-----GVCYIWYGQNI 284 (612)
Q Consensus 220 ~----d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~d-----g~i~iwd~~~~ 284 (612)
. -..+.+||+.+..-. .+..+..+.....++. -++++++.|+.+ ..+.+||..+.
T Consensus 225 ~~~~~~~~v~~yd~~~~~W~---~~~~~p~~r~~~~~~~-------~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 225 DGQDQLNSVERYDVETETWT---FVAPMKHRRSALGITV-------HQGRIYVLGGYDGHTFLDSVECYDPDTD 288 (308)
T ss_dssp CSSSBCCCEEEEETTTTEEE---ECCCCSSCCBSCEEEE-------ETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred CCCCccceEEEEeCCCCcEE---ECCCCCCCccceEEEE-------ECCEEEEEcCcCCCcccceEEEEcCCCC
Confidence 2 145888998876432 1111211111112222 245666666643 35677776654
No 314
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.72 E-value=0.25 Score=48.22 Aligned_cols=144 Identities=10% Similarity=0.049 Sum_probs=72.5
Q ss_pred CcEEEEEEC-----C------CcEEEEEcCCCeEEEEeccCCCCCe-EEEEEecCCCEEEEEecC--------CcEEEEE
Q 007234 86 SSLLVLGTG-----G------GDVLALAVSAGQLKWRLSDCHPGGV-SAISFATHGSCIYSAGAD--------GMVCEID 145 (612)
Q Consensus 86 ~~~l~~gs~-----~------g~I~vwd~~~~~~~~~~~~~h~~~V-~~l~~sp~~~~l~s~s~d--------g~v~iwd 145 (612)
+.+++.|+. . ..+.+||+.+++-.. +.......- .+++.. +++.++.|+.+ ..+.+||
T Consensus 46 ~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d 123 (315)
T 4asc_A 46 NQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLG-MPPLPSPRCLFGLGEA-LNSIYVVGGREIKDGERCLDSVMCYD 123 (315)
T ss_dssp CCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEE-CCCBSSCEESCEEEEE-TTEEEEECCEESSTTCCBCCCEEEEE
T ss_pred CEEEEEcCcccCCCCCccccccceEEecCCCCeEEE-CCCCCcchhceeEEEE-CCEEEEEeCCcCCCCCcccceEEEEC
Confidence 667777773 1 127889998876431 111011110 112222 56666666632 4588999
Q ss_pred CCCCceeE--EEecCCCCeeEEEECCCCCEEEEeC--------CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEE
Q 007234 146 PLTGSLLG--KFRASTKGISCMAVSSDGKMLATAA--------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVL 215 (612)
Q Consensus 146 ~~~~~~~~--~~~~~~~~v~~l~~spdg~~l~~~~--------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~ 215 (612)
..+.+-.. .+....... +++. -++++++.|+ ..+.+||..+.+-...-..........+..-+++.++
T Consensus 124 ~~~~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv 201 (315)
T 4asc_A 124 RLSFKWGESDPLPYVVYGH-TVLS-HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVHDGRIIV 201 (315)
T ss_dssp TTTTEEEECCCCSSCCBSC-EEEE-ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEE
T ss_pred CCCCcEeECCCCCCcccce-eEEE-ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEECCEEEE
Confidence 88764322 111111122 2222 3566766665 3699999988753221111111111112223677777
Q ss_pred EEEcCCC----eEEEEEcCCCc
Q 007234 216 SSAVGER----YIALWRTDGVK 233 (612)
Q Consensus 216 s~s~~d~----~i~vwd~~~~~ 233 (612)
.+|..+. .+.+||+.+..
T Consensus 202 ~GG~~~~~~~~~~~~yd~~~~~ 223 (315)
T 4asc_A 202 AAGVTDTGLTSSAEVYSITDNK 223 (315)
T ss_dssp EEEECSSSEEEEEEEEETTTTE
T ss_pred EeccCCCCccceEEEEECCCCe
Confidence 7764222 57888887764
No 315
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.62 E-value=0.21 Score=48.24 Aligned_cols=145 Identities=12% Similarity=0.057 Sum_probs=75.1
Q ss_pred CcEEEEEECCC-----cEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecC-----CcEEEEECCCCceeEE-
Q 007234 86 SSLLVLGTGGG-----DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD-----GMVCEIDPLTGSLLGK- 154 (612)
Q Consensus 86 ~~~l~~gs~~g-----~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~d-----g~v~iwd~~~~~~~~~- 154 (612)
+.+++.|+.++ .+.+||+.+++-...-.......-.++.. -+++.++.|+.+ ..+.+||+.+.+-...
T Consensus 113 ~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~ 191 (301)
T 2vpj_A 113 DMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVV-ASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVT 191 (301)
T ss_dssp TEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEE-ETTEEEEECCBCSSCBCCCEEEEETTTTEEEEEC
T ss_pred CEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEE-ECCEEEEECCCCCCcccceEEEEeCCCCcEEeCC
Confidence 56677776543 48999998876432111111111112222 266677777654 4688999887654322
Q ss_pred -EecCCCCeeEEEECCCCCEEEEeC-------CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCC----C
Q 007234 155 -FRASTKGISCMAVSSDGKMLATAA-------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE----R 222 (612)
Q Consensus 155 -~~~~~~~v~~l~~spdg~~l~~~~-------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d----~ 222 (612)
+........++.+ ++++++.|+ ..+.+||+.+.+-...-..........+..-+++.++.+|..+ .
T Consensus 192 ~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~ 269 (301)
T 2vpj_A 192 PMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVLRGRLYAIAGYDGNSLLS 269 (301)
T ss_dssp CCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBEE
T ss_pred CCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEECCEEEEEcCcCCCcccc
Confidence 1111112222333 567777765 3699999988764322111111111112223666666665321 3
Q ss_pred eEEEEEcCCCc
Q 007234 223 YIALWRTDGVK 233 (612)
Q Consensus 223 ~i~vwd~~~~~ 233 (612)
.+.+||+.+.+
T Consensus 270 ~v~~yd~~~~~ 280 (301)
T 2vpj_A 270 SIECYDPIIDS 280 (301)
T ss_dssp EEEEEETTTTE
T ss_pred cEEEEcCCCCe
Confidence 57788887654
No 316
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.46 E-value=0.89 Score=45.86 Aligned_cols=239 Identities=13% Similarity=0.121 Sum_probs=141.7
Q ss_pred ccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccccc
Q 007234 5 NIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (612)
Q Consensus 5 ~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (612)
|+..=+.-.+|..+.+|.-. ..++.|+|+++.+.+..+.- ..++.--.|.+.+
T Consensus 65 pi~AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~-------------------~e~VvfWkWis~~------- 117 (494)
T 1bpo_A 65 PISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-------------------TDDVTFWKWISLN------- 117 (494)
T ss_dssp ECCCSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEEC-------------------SSCCCEEEEEETT-------
T ss_pred ccccceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceec-------------------CCCceEEEecCCC-------
Confidence 33333445788888888765 67899999999988877642 2245566777753
Q ss_pred CCcEEEEEECCCcEEEEEcCCCeEEEEeccCC----CCCeEEEEEecCCCEEEEEe-------cCCcEEEEECCCCceeE
Q 007234 85 GSSLLVLGTGGGDVLALAVSAGQLKWRLSDCH----PGGVSAISFATHGSCIYSAG-------ADGMVCEIDPLTGSLLG 153 (612)
Q Consensus 85 ~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h----~~~V~~l~~sp~~~~l~s~s-------~dg~v~iwd~~~~~~~~ 153 (612)
.|+..+ +..|+-|++.........++.| ...|..-..+++.++++..| -.|.+.+|..+.+ .-+
T Consensus 118 ---~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ 192 (494)
T 1bpo_A 118 ---TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQ 192 (494)
T ss_dssp ---EEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEE
T ss_pred ---eEEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccc
Confidence 344433 4569999997644333443444 34677777888999876544 2467889987654 345
Q ss_pred EEecCCCCeeEEEECCC---CCEEEEeC-----CeEEEEEcCCC--------e-eEEEEe---cCCCCEEEEEEeeCCcE
Q 007234 154 KFRASTKGISCMAVSSD---GKMLATAA-----GQLKTFNCSDH--------K-KMQKFS---GHPGAVRFMTFSDNGKY 213 (612)
Q Consensus 154 ~~~~~~~~v~~l~~spd---g~~l~~~~-----g~i~lwd~~~~--------~-~~~~~~---~h~~~v~~l~~sp~~~~ 213 (612)
.+.+|......+.+..+ ..+++.+. +.+++.++... + .+..+- ....-.-++..++.-..
T Consensus 193 ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygv 272 (494)
T 1bpo_A 193 PIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDV 272 (494)
T ss_dssp EECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTE
T ss_pred hheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCE
Confidence 56776655544444321 12333332 68899888532 1 111111 11233456777876666
Q ss_pred EEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcce
Q 007234 214 VLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE 286 (612)
Q Consensus 214 l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~ 286 (612)
++... .-|.+.+||+.++... +...-....+-..+.. ....-+++....|.|.--.++....
T Consensus 273 iyviT-K~G~i~lyDleTgt~i-----~~nrIs~~~iF~t~~~-----~~~~Gi~~Vnr~GqVl~v~v~e~~i 334 (494)
T 1bpo_A 273 VFLIT-KYGYIHLYDLETGTCI-----YMNRISGETIFVTAPH-----EATAGIIGVNRKGQVLSVCVEEENI 334 (494)
T ss_dssp EEEEE-TTSEEEEEETTTCCEE-----EEEECCSSCEEEEEEE-----TTTTEEEEEETTCEEEEEEECTTTH
T ss_pred EEEEe-cCceEEEEecccceee-----eeecccCCceEEeccc-----CCCCcEEEEccCceEEEEEEccccc
Confidence 66666 6899999999999744 3333222222222222 3344556666777776665554444
No 317
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.37 E-value=0.02 Score=56.49 Aligned_cols=117 Identities=15% Similarity=0.198 Sum_probs=74.4
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEEEeeccC-CccccccccccccccccccceeEEEeeecccccccccCCcEEEEE-ECC
Q 007234 18 DYFAICSGDARIKIWDTLKGQVQTEFADIA-STETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLG-TGG 95 (612)
Q Consensus 18 ~~las~s~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~g-s~~ 95 (612)
..++.++.||.|.-+|..+|+...+++... .+... ...+ .. +. ++..++.. +.|
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~--~~~~------~~--------~~--------~~~~~vv~p~~d 66 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIE--IQEP------SR--------LE--------TYETLIIEPFGD 66 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEE--CCCS------CT--------TT--------SSEEEEECCSTT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEE--ecCC------cc--------cc--------CCcEEEEEECCC
Confidence 467889999999999999999999886430 01000 0000 00 00 02334443 689
Q ss_pred CcEEEEEcCCCeEEEEeccC---CCCCeEE---EEE-----ecCCCEEEEEecCCcEEEEECCCCceeEEEecC
Q 007234 96 GDVLALAVSAGQLKWRLSDC---HPGGVSA---ISF-----ATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS 158 (612)
Q Consensus 96 g~I~vwd~~~~~~~~~~~~~---h~~~V~~---l~~-----sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~ 158 (612)
|.|..++..+|...+.+... ..+++.. ... ...+..+++++.+|.+...|..+|+.+..+...
T Consensus 67 G~l~a~~~~~G~~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~ 140 (339)
T 2be1_A 67 GNIYYFNAHQGLQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPG 140 (339)
T ss_dssp TEEEEEETTTEEEEEEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred CEEEEEECCCCcEEeeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence 99999999988765544211 1222221 000 013557899999999999999999999988743
No 318
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.35 E-value=0.7 Score=44.97 Aligned_cols=143 Identities=13% Similarity=0.080 Sum_probs=72.0
Q ss_pred CcEEEEEEC----CC-------cEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecC-------CcEEEEECC
Q 007234 86 SSLLVLGTG----GG-------DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD-------GMVCEIDPL 147 (612)
Q Consensus 86 ~~~l~~gs~----~g-------~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~d-------g~v~iwd~~ 147 (612)
+.+++.|+. ++ .+.+||+.+++-...-.......-.+++.. +++.++.|+.+ ..+.+||..
T Consensus 57 ~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~ 135 (318)
T 2woz_A 57 NQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV-DDKIYVVAGKDLQTEASLDSVLCYDPV 135 (318)
T ss_dssp SCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE-TTEEEEEEEEBTTTCCEEEEEEEEETT
T ss_pred CEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE-CCEEEEEcCccCCCCcccceEEEEeCC
Confidence 567777763 12 177899888765321100011111122222 56667777654 357888987
Q ss_pred CCceeEE--EecCCCCeeEEEECCCCCEEEEeC--------CeEEEEEcCCCeeEEE--EecCCCCEEEEEEeeCCcEEE
Q 007234 148 TGSLLGK--FRASTKGISCMAVSSDGKMLATAA--------GQLKTFNCSDHKKMQK--FSGHPGAVRFMTFSDNGKYVL 215 (612)
Q Consensus 148 ~~~~~~~--~~~~~~~v~~l~~spdg~~l~~~~--------g~i~lwd~~~~~~~~~--~~~h~~~v~~l~~sp~~~~l~ 215 (612)
+.+-... +....... +++. .++++++.|+ ..+.+||+.+.+-... +...... .+++ .-+++.++
T Consensus 136 ~~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~-~~~~~iyv 211 (318)
T 2woz_A 136 AAKWSEVKNLPIKVYGH-NVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSM-FGVA-IHKGKIVI 211 (318)
T ss_dssp TTEEEEECCCSSCEESC-EEEE-ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBS-CEEE-EETTEEEE
T ss_pred CCCEeECCCCCCccccc-EEEE-ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCccc-ceEE-EECCEEEE
Confidence 7643322 11111111 2222 4677777765 2599999988754322 1111111 1222 23567667
Q ss_pred EEEcCC----CeEEEEEcCCCc
Q 007234 216 SSAVGE----RYIALWRTDGVK 233 (612)
Q Consensus 216 s~s~~d----~~i~vwd~~~~~ 233 (612)
.+|..+ ..+.+||+.+..
T Consensus 212 ~GG~~~~~~~~~~~~yd~~~~~ 233 (318)
T 2woz_A 212 AGGVTEDGLSASVEAFDLKTNK 233 (318)
T ss_dssp EEEEETTEEEEEEEEEETTTCC
T ss_pred EcCcCCCCccceEEEEECCCCe
Confidence 766322 246788887764
No 319
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.35 E-value=0.23 Score=48.20 Aligned_cols=143 Identities=10% Similarity=0.019 Sum_probs=74.0
Q ss_pred CcEEEEEECC------CcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEec---------CCcEEEEECCCCc
Q 007234 86 SSLLVLGTGG------GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA---------DGMVCEIDPLTGS 150 (612)
Q Consensus 86 ~~~l~~gs~~------g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~---------dg~v~iwd~~~~~ 150 (612)
+.+++.|+.+ ..+.+||+.+++-...-.......-.++.. -+++.++.|+. -..+.+||+.+.+
T Consensus 102 ~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~ 180 (306)
T 3ii7_A 102 GKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE-ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATET 180 (306)
T ss_dssp TEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEESCTTTCEECCCEEEEETTTTE
T ss_pred CEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE-ECCEEEEECCCCCCCCcccccceEEEeCCCCCe
Confidence 5667777654 349999999886432211001111112222 25666666653 3458899988774
Q ss_pred eeEE--EecCCCCeeEEEECCCCCEEEEeC-------CeEEEEEcCCCeeEEE--EecCCCCEEEEEEeeCCcEEEEEEc
Q 007234 151 LLGK--FRASTKGISCMAVSSDGKMLATAA-------GQLKTFNCSDHKKMQK--FSGHPGAVRFMTFSDNGKYVLSSAV 219 (612)
Q Consensus 151 ~~~~--~~~~~~~v~~l~~spdg~~l~~~~-------g~i~lwd~~~~~~~~~--~~~h~~~v~~l~~sp~~~~l~s~s~ 219 (612)
-... +.........+.+ ++++++.|+ ..+.+||+.+.+-... ++........+.+ +++.++.+|.
T Consensus 181 W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~ 256 (306)
T 3ii7_A 181 WTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAGF 256 (306)
T ss_dssp EEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEEECB
T ss_pred EEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEEeCc
Confidence 3322 1111112222222 567777765 3689999988753221 1111111122222 5666666652
Q ss_pred C----CCeEEEEEcCCCc
Q 007234 220 G----ERYIALWRTDGVK 233 (612)
Q Consensus 220 ~----d~~i~vwd~~~~~ 233 (612)
. -..+.+||+.+.+
T Consensus 257 ~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 257 QGVGRLGHILEYNTETDK 274 (306)
T ss_dssp CSSSBCCEEEEEETTTTE
T ss_pred CCCeeeeeEEEEcCCCCe
Confidence 1 1457788877764
No 320
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.31 E-value=0.035 Score=54.80 Aligned_cols=196 Identities=10% Similarity=0.037 Sum_probs=105.5
Q ss_pred CcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEe--cCCCEEEEE--ecCCcEEEEECCCCceeEEEecC---
Q 007234 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFA--THGSCIYSA--GADGMVCEIDPLTGSLLGKFRAS--- 158 (612)
Q Consensus 86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~s--p~~~~l~s~--s~dg~v~iwd~~~~~~~~~~~~~--- 158 (612)
+.++++++.||.|.-+|..+|+..+++......++....-. +.+..++.+ +.||.|..+|..+|.....+...
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv 89 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV 89 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence 56899999999999999999999999854321233322100 112234443 58999999999888655444321
Q ss_pred -CCCeeE---EEE-C----CCCCEEEEeC--CeEEEEEcCCCeeEEEEecCC--CC-----EEEEEEe-----eCCcEEE
Q 007234 159 -TKGISC---MAV-S----SDGKMLATAA--GQLKTFNCSDHKKMQKFSGHP--GA-----VRFMTFS-----DNGKYVL 215 (612)
Q Consensus 159 -~~~v~~---l~~-s----pdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~--~~-----v~~l~~s-----p~~~~l~ 215 (612)
..++.. ..+ . ..+..+++|+ |.++..|+++|+.+.++.... +. ..|.... ..+..++
T Consensus 90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ 169 (339)
T 2be1_A 90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIV 169 (339)
T ss_dssp TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEE
T ss_pred eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEE
Confidence 122221 001 0 0344566666 899999999999998886321 11 1111110 1123455
Q ss_pred EEEcCCCeEEEEEcCCCccccceeeEee-cCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceec
Q 007234 216 SSAVGERYIALWRTDGVKKQSASCVLAM-EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR 288 (612)
Q Consensus 216 s~s~~d~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~ 288 (612)
.+. .+..+.+.+ ++++ . ....+.. ......... ...-..+.|+.+ +.++.||.|.-+|..+|+.+.
T Consensus 170 ig~-~~y~v~~~~-~sG~-~-W~~~~s~~~~~~~~~~~--~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 170 IGK-TIFELGIHS-YDGA-S-YNVTYSTWQQNVLDVPL--ALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEE-EEEECEECC-TTSC-C-CCCEEEEEECCTTTHHH--HTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred Eec-ceEEEEEEC-CCCC-e-EEEeccccccccccccc--ccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence 554 466666655 3332 1 1111100 000000000 000000134565 557889999999999988765
No 321
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.18 E-value=0.28 Score=47.44 Aligned_cols=143 Identities=11% Similarity=0.064 Sum_probs=74.4
Q ss_pred CcEEEEEECCC-----cEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecC-------CcEEEEECCCCceeE
Q 007234 86 SSLLVLGTGGG-----DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD-------GMVCEIDPLTGSLLG 153 (612)
Q Consensus 86 ~~~l~~gs~~g-----~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~d-------g~v~iwd~~~~~~~~ 153 (612)
+.+++.|+.++ .+.+||+.+++-...-.......-.+++. -+++.++.|+.+ ..+.+||+.+.+-..
T Consensus 109 ~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~ 187 (302)
T 2xn4_A 109 GLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTY 187 (302)
T ss_dssp TEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTEEEE
T ss_pred CEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEE
Confidence 56777777654 38899998876532211111111112222 256666666542 458899988764332
Q ss_pred E--EecCCCCeeEEEECCCCCEEEEeC-------CeEEEEEcCCCeeEEEEecCCCC-EEEEEEeeCCcEEEEEEcCCC-
Q 007234 154 K--FRASTKGISCMAVSSDGKMLATAA-------GQLKTFNCSDHKKMQKFSGHPGA-VRFMTFSDNGKYVLSSAVGER- 222 (612)
Q Consensus 154 ~--~~~~~~~v~~l~~spdg~~l~~~~-------g~i~lwd~~~~~~~~~~~~h~~~-v~~l~~sp~~~~l~s~s~~d~- 222 (612)
. +........++.+ ++++++.|+ ..+.+||+.+.+-.. +.....+ ...-...-+++.++.+|. ++
T Consensus 188 ~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~-~~~~~~~r~~~~~~~~~~~i~v~GG~-~~~ 263 (302)
T 2xn4_A 188 IAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQ-VADMNMCRRNAGVCAVNGLLYVVGGD-DGS 263 (302)
T ss_dssp ECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEE-ECCCSSCCBSCEEEEETTEEEEECCB-CSS
T ss_pred CCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEee-CCCCCCccccCeEEEECCEEEEECCc-CCC
Confidence 2 2211122222222 567777775 379999998875432 2211111 111122236666666653 32
Q ss_pred ----eEEEEEcCCCc
Q 007234 223 ----YIALWRTDGVK 233 (612)
Q Consensus 223 ----~i~vwd~~~~~ 233 (612)
.+.+||+.+..
T Consensus 264 ~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 264 CNLASVEYYNPTTDK 278 (302)
T ss_dssp SBCCCEEEEETTTTE
T ss_pred cccccEEEEcCCCCe
Confidence 47888887654
No 322
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.09 E-value=1.1 Score=44.39 Aligned_cols=26 Identities=15% Similarity=0.266 Sum_probs=19.5
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECC
Q 007234 10 LTSFSPALDYFAICSGDARIKIWDTL 35 (612)
Q Consensus 10 ~~~fspdg~~las~s~dg~i~iwd~~ 35 (612)
.++|.|||++|..+...|.|++++..
T Consensus 22 ~i~~~pdG~~l~V~e~~G~i~~~~~~ 47 (353)
T 2g8s_A 22 ALAFLPDNHGMLITLRGGELRHWQAG 47 (353)
T ss_dssp EEEECSTTCCEEEEETTTEEEEEETT
T ss_pred EEEEcCCCCEEEEEeCCceEEEEeCC
Confidence 55999999934445567999999853
No 323
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.02 E-value=0.27 Score=56.97 Aligned_cols=194 Identities=11% Similarity=0.109 Sum_probs=114.5
Q ss_pred CcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCE-EEEEecCCcEEEEECCCC-ceeEEEecC----C
Q 007234 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSC-IYSAGADGMVCEIDPLTG-SLLGKFRAS----T 159 (612)
Q Consensus 86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~-l~s~s~dg~v~iwd~~~~-~~~~~~~~~----~ 159 (612)
...|++-. ..++.|||+.+...+..+. ...+|.--.|-.+... |+| +..|+-|++... .+++.|..| .
T Consensus 77 ~~iiALra-g~~lQiFnl~~k~klks~~--~~e~VvfWkWis~~~l~lVT---~~aVyHW~~~~~s~P~k~fdR~~~L~~ 150 (1630)
T 1xi4_A 77 SKVIALKA-GKTLQIFNIEMKSKMKAHT--MTDDVTFWKWISLNTVALVT---DNAVYHWSMEGESQPVKMFDRHSSLAG 150 (1630)
T ss_pred cceEEEec-CCeEEEeehHHhhhhcccc--cCCCceEEEecCCCeeEEEc---CCeEEEeccCCCCccHHHHhcchhccc
Confidence 34444443 6669999999888775553 3456666677544433 333 456999999642 444444444 3
Q ss_pred CCeeEEEECCCCCEEEEeC---------CeEEEEEcCCCeeEEEEecCCCCEEEEEEe--eCCcEEEEEEc---CCCeEE
Q 007234 160 KGISCMAVSSDGKMLATAA---------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFS--DNGKYVLSSAV---GERYIA 225 (612)
Q Consensus 160 ~~v~~l~~spdg~~l~~~~---------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~s--p~~~~l~s~s~---~d~~i~ 225 (612)
..|..-..++++++++..+ |.+.+|.++.+. -+.+.||.+.-..+... +....+++-+. ..+.+.
T Consensus 151 ~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~-sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLh 229 (1630)
T 1xi4_A 151 CQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLH 229 (1630)
T ss_pred CeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc-chhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEE
Confidence 4677778899999987543 789999886543 34556776554443332 22222333221 125788
Q ss_pred EEEcCCC---ccc-cce---eeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccC
Q 007234 226 LWRTDGV---KKQ-SAS---CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK 291 (612)
Q Consensus 226 vwd~~~~---~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~ 291 (612)
|-++... ... ... ..+..+....+.-....+ +.-..+...+.-|.|++||+.|+..+....
T Consensus 230 i~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs-----~k~g~iy~itk~G~~~~~d~~t~~~i~~~r 297 (1630)
T 1xi4_A 230 IIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQIS-----EKHDVVFLITKYGYIHLYDLETGTCIYMNR 297 (1630)
T ss_pred EEecCCCccCCCCCccccccccCCcccccCcceEEEec-----cccCEEEEEecCceEEEEecccchhhhhcc
Confidence 8887543 111 000 011111223333334444 666778888999999999999998876443
No 324
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.01 E-value=0.99 Score=44.66 Aligned_cols=190 Identities=11% Similarity=-0.011 Sum_probs=89.8
Q ss_pred CcEEEEEEC-C---------CcEEEEEcCCCeEEEEeccC-CCCCeEEEEEecCCCEEEEEecC----------------
Q 007234 86 SSLLVLGTG-G---------GDVLALAVSAGQLKWRLSDC-HPGGVSAISFATHGSCIYSAGAD---------------- 138 (612)
Q Consensus 86 ~~~l~~gs~-~---------g~I~vwd~~~~~~~~~~~~~-h~~~V~~l~~sp~~~~l~s~s~d---------------- 138 (612)
+.+++.|+. + .++.+||+.+++-...-... ....-.++.. .+++.++.|+.+
T Consensus 66 ~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~~~ 144 (357)
T 2uvk_A 66 GNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV-HNGKAYVTGGVNQNIFNGYFEDLNEAGK 144 (357)
T ss_dssp TEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEE-ETTEEEEEECCCHHHHHHHHHHHHHHTT
T ss_pred CEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEE-ECCEEEEEeCcCCCcCcccccchhhcCC
Confidence 556666665 1 45999999987653211111 1111112222 467777777754
Q ss_pred -----------------------CcEEEEECCCCceeEE--EecCCCCeeEEEECCCCCEEEEeC--------CeEEEEE
Q 007234 139 -----------------------GMVCEIDPLTGSLLGK--FRASTKGISCMAVSSDGKMLATAA--------GQLKTFN 185 (612)
Q Consensus 139 -----------------------g~v~iwd~~~~~~~~~--~~~~~~~v~~l~~spdg~~l~~~~--------g~i~lwd 185 (612)
..+.+||..+.+-... +......-.+++.. ++++++.|+ ..+..||
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d 223 (357)
T 2uvk_A 145 DSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELD 223 (357)
T ss_dssp CHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEE
T ss_pred cccchhhhhhhhccccccccCCcccEEEEeCCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEE
Confidence 5789999887653332 22111111233333 566666665 2577788
Q ss_pred c--CCCeeEE--EEecCCCCEEEEEEeeCCcEEEEEEcCC---------------------CeEEEEEcCCCccccceee
Q 007234 186 C--SDHKKMQ--KFSGHPGAVRFMTFSDNGKYVLSSAVGE---------------------RYIALWRTDGVKKQSASCV 240 (612)
Q Consensus 186 ~--~~~~~~~--~~~~h~~~v~~l~~sp~~~~l~s~s~~d---------------------~~i~vwd~~~~~~~~~~~~ 240 (612)
+ .+.+-.. .+..........+...+++.++.+|... ..+.+||+.+..-. .+
T Consensus 224 ~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~---~~ 300 (357)
T 2uvk_A 224 FTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWD---KS 300 (357)
T ss_dssp CC---CEEEECCCSSTTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CE---EE
T ss_pred ecCCCCcEEecCCCCCCcccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCcee---eC
Confidence 7 4443221 1111111111123334666666665211 24678888766432 22
Q ss_pred EeecCCceeEEeEEecCCccCCCCcEEEEEecCC------cEEEEECCCccee
Q 007234 241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG------VCYIWYGQNIEEL 287 (612)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg------~i~iwd~~~~~~~ 287 (612)
..+..+-....++. -+++.++.|+.++ .|.++++++++.+
T Consensus 301 ~~~p~~r~~~~~~~-------~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~ 346 (357)
T 2uvk_A 301 GELSQGRAYGVSLP-------WNNSLLIIGGETAGGKAVTDSVLITVKDNKVT 346 (357)
T ss_dssp EECSSCCBSSEEEE-------ETTEEEEEEEECGGGCEEEEEEEEEC-CCSCE
T ss_pred CCCCCCcccceeEE-------eCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeE
Confidence 22222222112222 3567777777542 3555677766554
No 325
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=95.89 E-value=3.7 Score=47.65 Aligned_cols=177 Identities=11% Similarity=0.109 Sum_probs=102.4
Q ss_pred CcEEEEEcCCCeEEEEeccCCCCCeEEEEE---ecC-CCEEEEEe----------cCCcEEEEECCCCceeEEEe-cCCC
Q 007234 96 GDVLALAVSAGQLKWRLSDCHPGGVSAISF---ATH-GSCIYSAG----------ADGMVCEIDPLTGSLLGKFR-ASTK 160 (612)
Q Consensus 96 g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~---sp~-~~~l~s~s----------~dg~v~iwd~~~~~~~~~~~-~~~~ 160 (612)
+.|++.|..+.+.+..+.-.....+.+++. ..+ ..+++.|. ..|.|.++++..++.....+ ..++
T Consensus 807 s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g 886 (1158)
T 3ei3_A 807 HNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKG 886 (1158)
T ss_dssp EEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESS
T ss_pred EEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCC
Confidence 348899998888776554334455666553 222 35777775 34789999987544322221 2356
Q ss_pred CeeEEEECCCCCEEEEeCCeEEEEEcCCCeeEE-EEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCcccccee
Q 007234 161 GISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQ-KFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC 239 (612)
Q Consensus 161 ~v~~l~~spdg~~l~~~~g~i~lwd~~~~~~~~-~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~ 239 (612)
+|++++-- +|+++++.+..|++|++...+.++ ....+. .|..+.....+.+++.+. --+.|.++..+..... ..
T Consensus 887 ~v~al~~~-~g~Lla~ig~~l~vy~l~~~~~L~~~~~~~~-~i~~~~l~~~~~~I~vgD-~~~Sv~~~~y~~~~~~--L~ 961 (1158)
T 3ei3_A 887 AVYSMVEF-NGKLLASINSTVRLYEWTTEKELRTECNHYN-NIMALYLKTKGDFILVGD-LMRSVLLLAYKPMEGN--FE 961 (1158)
T ss_dssp CEEEEEEE-TTEEEEEETTEEEEEEECTTSCEEEEEEECC-CSCEEEEEEETTEEEEEE-SSBCEEEEEEETTTTE--EE
T ss_pred cCEEEeee-CCEEEEEcCCEEEEEECCCCceEEEEeeccc-cEEEEEEeccCCEEEEEE-hhheEEEEEEEcCCCe--EE
Confidence 88888755 466666666899999998765444 222122 233333334467787775 3455665544322111 11
Q ss_pred eEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCC
Q 007234 240 VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN 283 (612)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~ 283 (612)
.+.-+.....+.++.+- .+ ..++.+..+|.|.++....
T Consensus 962 ~~a~D~~~~~vta~~~l-----d~-~t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 962 EIARDFNPNWMSAVEIL-----DD-DNFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp EEEECCSCBCEEEEEEE-----ET-TEEEEEETTSEEEEEEECT
T ss_pred EEEeecccccEEEEEEE-----cc-CcEEEEcCCCcEEEEecCC
Confidence 22223334444455553 23 4678889999999987543
No 326
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=95.74 E-value=0.083 Score=53.16 Aligned_cols=132 Identities=14% Similarity=0.154 Sum_probs=80.2
Q ss_pred ccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccccc
Q 007234 5 NIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (612)
Q Consensus 5 ~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (612)
.|+.+ ..||+|++||..+ +..|.|-.+-.+.....-.+....+....|...-........+..+.|.|-...
T Consensus 67 ~i~ql--vlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~----- 138 (452)
T 3pbp_A 67 DTFHV--ISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYR----- 138 (452)
T ss_dssp TTCEE--EECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGG-----
T ss_pred ceeEE--EECCCCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCC-----
Confidence 56666 9999999999886 557888887633211100000011222223322111112456788899988765
Q ss_pred CCcEEEEEECCCcEEEEEcCCCeEE-EEec--------cCCCCCeEEEEEecCCCEEEEEe--cCCcEEEEE
Q 007234 85 GSSLLVLGTGGGDVLALAVSAGQLK-WRLS--------DCHPGGVSAISFATHGSCIYSAG--ADGMVCEID 145 (612)
Q Consensus 85 ~~~~l~~gs~~g~I~vwd~~~~~~~-~~~~--------~~h~~~V~~l~~sp~~~~l~s~s--~dg~v~iwd 145 (612)
+..|++-+.|+.|++||+...... ..+. ......|.+++|.+++-.|+..+ ..|.|+..-
T Consensus 139 -ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAlc 209 (452)
T 3pbp_A 139 -DSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAFY 209 (452)
T ss_dssp -GCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEES
T ss_pred -CCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEEC
Confidence 789999999999999999863211 1111 12235688889988776677655 667776554
No 327
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=95.62 E-value=2.6 Score=43.90 Aligned_cols=110 Identities=15% Similarity=0.094 Sum_probs=70.1
Q ss_pred CCeeEEEECCCCCEEEEeC---CeEEEEEcCCC------ee-------EEEEecCCCCEEEEEEeeCCcEEEEEEcCCCe
Q 007234 160 KGISCMAVSSDGKMLATAA---GQLKTFNCSDH------KK-------MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERY 223 (612)
Q Consensus 160 ~~v~~l~~spdg~~l~~~~---g~i~lwd~~~~------~~-------~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~ 223 (612)
.....+.++|||+++++++ .++.++|++.. +. +.+..- .......+|.++| ..+++-.-|..
T Consensus 323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~-GlGPlHt~Fd~~G-~aYTtlfidSq 400 (638)
T 3sbq_A 323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPEL-GLGPLHTTFDGRG-NAYTTLFIDSQ 400 (638)
T ss_dssp SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBC-CSCEEEEEECSSS-EEEEEETTTTE
T ss_pred CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccC-CCcccEEEECCCC-ceEeeeeecce
Confidence 3457789999999999988 69999998742 11 223332 2345678999999 56666667999
Q ss_pred EEEEEcCCC------ccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEec
Q 007234 224 IALWRTDGV------KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE 272 (612)
Q Consensus 224 i~vwd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~ 272 (612)
|.-|++... +.. ...+..+.-+-..-.....-.....++|++|++.+.
T Consensus 401 vvkWni~~a~~~~~g~~~-~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK 454 (638)
T 3sbq_A 401 VVKWNMEEAVRAYKGEKV-NYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSK 454 (638)
T ss_dssp EEEEEHHHHHHHHTTCCC-CCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEES
T ss_pred EEEEeccHHHHHhcCccC-CeeeeccccccCCcccccCCCccCCCCccEEEEecc
Confidence 999998653 211 123334443333333333222333588999988754
No 328
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=95.50 E-value=0.76 Score=44.69 Aligned_cols=101 Identities=15% Similarity=0.186 Sum_probs=54.8
Q ss_pred CcEEEEEECC-------CcEEEEEcCCCeEEEEeccCCCCCe--EEEEEecCCCEEEEEec------CCcEEEEECCCCc
Q 007234 86 SSLLVLGTGG-------GDVLALAVSAGQLKWRLSDCHPGGV--SAISFATHGSCIYSAGA------DGMVCEIDPLTGS 150 (612)
Q Consensus 86 ~~~l~~gs~~-------g~I~vwd~~~~~~~~~~~~~h~~~V--~~l~~sp~~~~l~s~s~------dg~v~iwd~~~~~ 150 (612)
+.+++.|+.+ ..+.+||+.+++-...- . -..+. .++.. .+++.++.|+. -..+.+||+.+.+
T Consensus 110 ~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~-~-~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~ 186 (318)
T 2woz_A 110 DKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVK-N-LPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGD 186 (318)
T ss_dssp TEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEEC-C-CSSCEESCEEEE-ETTEEEEECCEESSSCBCCCEEEEETTTTE
T ss_pred CEEEEEcCccCCCCcccceEEEEeCCCCCEeECC-C-CCCcccccEEEE-ECCEEEEEcCCCCCCCccceEEEEcCCCCE
Confidence 5677777754 23889999887654221 1 11111 11222 35666666653 2458999988765
Q ss_pred eeEE--EecCCCCeeEEEECCCCCEEEEeC-------CeEEEEEcCCCee
Q 007234 151 LLGK--FRASTKGISCMAVSSDGKMLATAA-------GQLKTFNCSDHKK 191 (612)
Q Consensus 151 ~~~~--~~~~~~~v~~l~~spdg~~l~~~~-------g~i~lwd~~~~~~ 191 (612)
-... +........++.+ ++++++.|+ ..+.+||+.+.+-
T Consensus 187 W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 234 (318)
T 2woz_A 187 WKDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNKW 234 (318)
T ss_dssp EEEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCCE
T ss_pred EEECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCeE
Confidence 3322 1111112222222 567777765 3688999987753
No 329
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=95.49 E-value=0.74 Score=44.72 Aligned_cols=103 Identities=13% Similarity=0.088 Sum_probs=55.0
Q ss_pred CcEEEEEECC--------CcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEec-C-----CcEEEEECCCCce
Q 007234 86 SSLLVLGTGG--------GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA-D-----GMVCEIDPLTGSL 151 (612)
Q Consensus 86 ~~~l~~gs~~--------g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~-d-----g~v~iwd~~~~~~ 151 (612)
+.+++.|+.+ ..+.+||+.+++-...-.......-.+++. -+++.++.|+. + ..+.+||+.+.+-
T Consensus 99 ~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W 177 (315)
T 4asc_A 99 NSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS-HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEW 177 (315)
T ss_dssp TEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCTTSCBCCCEEEEETTTTEE
T ss_pred CEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE-ECCEEEEEeCCCCCCcccceEEEEeCCCCeE
Confidence 5566666632 349999999876432110001111112222 35666677765 2 4689999887643
Q ss_pred eEE--EecCCCCeeEEEECCCCCEEEEeC-------CeEEEEEcCCCee
Q 007234 152 LGK--FRASTKGISCMAVSSDGKMLATAA-------GQLKTFNCSDHKK 191 (612)
Q Consensus 152 ~~~--~~~~~~~v~~l~~spdg~~l~~~~-------g~i~lwd~~~~~~ 191 (612)
... +........++.+ ++++++.|+ ..+.+||+.+.+-
T Consensus 178 ~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 224 (315)
T 4asc_A 178 KELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKW 224 (315)
T ss_dssp EECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEE
T ss_pred EECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeE
Confidence 221 1111112222222 567777765 2689999988754
No 330
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=95.28 E-value=0.66 Score=44.95 Aligned_cols=184 Identities=11% Similarity=-0.035 Sum_probs=91.5
Q ss_pred CcEEEEEECC----CcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEec----C-----CcEEEEECCCCcee
Q 007234 86 SSLLVLGTGG----GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA----D-----GMVCEIDPLTGSLL 152 (612)
Q Consensus 86 ~~~l~~gs~~----g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~----d-----g~v~iwd~~~~~~~ 152 (612)
+.+++.|+.+ ..+.+||+.+++-...-.......-.+++. -++..++.|+. + ..+.+||+.+.+-.
T Consensus 25 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~ 103 (308)
T 1zgk_A 25 RLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCV-VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWS 103 (308)
T ss_dssp CCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCEEEETTEEEECCCEEEEETTTTEEE
T ss_pred CEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEE-ECCEEEEECCCcCCCCCCeecceEEEECCCCCeEe
Confidence 5667777643 348999998877542110000001112222 25666666665 2 46888998776432
Q ss_pred EE--EecCCCCeeEEEECCCCCEEEEeC-------CeEEEEEcCCCeeEEE--EecCCCCEEEEEEeeCCcEEEEEEcC-
Q 007234 153 GK--FRASTKGISCMAVSSDGKMLATAA-------GQLKTFNCSDHKKMQK--FSGHPGAVRFMTFSDNGKYVLSSAVG- 220 (612)
Q Consensus 153 ~~--~~~~~~~v~~l~~spdg~~l~~~~-------g~i~lwd~~~~~~~~~--~~~h~~~v~~l~~sp~~~~l~s~s~~- 220 (612)
.. +.........+.+ ++++++.|+ ..+.+||..+.+-... ++.....-..+. -+++.++.+|..
T Consensus 104 ~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~ 179 (308)
T 1zgk_A 104 PCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAV--LNRLLYAVGGFDG 179 (308)
T ss_dssp ECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCS
T ss_pred ECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEE--ECCEEEEEeCCCC
Confidence 21 1111222223333 677777765 3689999988754221 111111111222 256666666532
Q ss_pred ---CCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecC-----CcEEEEECCCc
Q 007234 221 ---ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET-----GVCYIWYGQNI 284 (612)
Q Consensus 221 ---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~d-----g~i~iwd~~~~ 284 (612)
-..+.+||+.+..-. .+..+..+.....++. -++++++.|+.+ ..+.+||+.+.
T Consensus 180 ~~~~~~~~~yd~~~~~W~---~~~~~p~~r~~~~~~~-------~~~~iyv~GG~~~~~~~~~v~~yd~~~~ 241 (308)
T 1zgk_A 180 TNRLNSAECYYPERNEWR---MITAMNTIRSGAGVCV-------LHNCIYAAGGYDGQDQLNSVERYDVETE 241 (308)
T ss_dssp SCBCCCEEEEETTTTEEE---ECCCCSSCCBSCEEEE-------ETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred CCcCceEEEEeCCCCeEe---eCCCCCCccccceEEE-------ECCEEEEEeCCCCCCccceEEEEeCCCC
Confidence 135888888776422 1111111111112222 245666666654 45778887654
No 331
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.24 E-value=0.93 Score=41.27 Aligned_cols=136 Identities=11% Similarity=0.035 Sum_probs=78.9
Q ss_pred CcEEEEEECCCcEEEEEcCCCeE------EEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCce------eE
Q 007234 86 SSLLVLGTGGGDVLALAVSAGQL------KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL------LG 153 (612)
Q Consensus 86 ~~~l~~gs~~g~I~vwd~~~~~~------~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~------~~ 153 (612)
..+|+....| +|+.=.+.++.. ..++-.+-=..+.+++|+|+|.+.++ .+|.++-.+..+.+. -.
T Consensus 4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t 80 (236)
T 1tl2_A 4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAK 80 (236)
T ss_dssp CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCE
T ss_pred ceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCccccccccc
Confidence 3455566666 666655555441 11221111246789999998875444 778887777655221 11
Q ss_pred EEec-CCCCeeEEEECCCCCEEEEeCCeEEEEEcCCCee------EEEE-ecCCCCEEEEEEeeCCcEEEEEEcCCCeEE
Q 007234 154 KFRA-STKGISCMAVSSDGKMLATAAGQLKTFNCSDHKK------MQKF-SGHPGAVRFMTFSDNGKYVLSSAVGERYIA 225 (612)
Q Consensus 154 ~~~~-~~~~v~~l~~spdg~~l~~~~g~i~lwd~~~~~~------~~~~-~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~ 225 (612)
.+-. .-....++.|.|+|.+.++..|.|+-++..+... -..+ .+-=..+..+.|.|+|.+.+.. |+.+.
T Consensus 81 ~IG~~Gw~~F~a~~fD~~G~LYav~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~---dg~ly 157 (236)
T 1tl2_A 81 KIGNGGWNQFQFLFFDPNGYLYAVSKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH---GQQFY 157 (236)
T ss_dssp EEECSCGGGCSEEEECTTSCEEEEETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE---TTEEE
T ss_pred EecccccccceEEEECCCCCEEEeCCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe---CCcEE
Confidence 1110 1113578999999999999669998887633211 0111 1111457899999999865543 56654
Q ss_pred EE
Q 007234 226 LW 227 (612)
Q Consensus 226 vw 227 (612)
-+
T Consensus 158 r~ 159 (236)
T 1tl2_A 158 KA 159 (236)
T ss_dssp EE
T ss_pred ec
Confidence 33
No 332
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=95.04 E-value=3 Score=41.23 Aligned_cols=129 Identities=13% Similarity=0.128 Sum_probs=71.2
Q ss_pred CcEEEEEECCCcEEEEEcCCCeEEEEe------ccCCCCCeEEEEEecC---CCEEEEEec--------CCcEEEEECCC
Q 007234 86 SSLLVLGTGGGDVLALAVSAGQLKWRL------SDCHPGGVSAISFATH---GSCIYSAGA--------DGMVCEIDPLT 148 (612)
Q Consensus 86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~------~~~h~~~V~~l~~sp~---~~~l~s~s~--------dg~v~iwd~~~ 148 (612)
++.++++...|.|++++.. +.....+ ..........++|+|+ +..|+.+.. ...|..|+...
T Consensus 29 G~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~~v~r~~~~~ 107 (353)
T 2g8s_A 29 NHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTAVGYGRLSD 107 (353)
T ss_dssp TCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEEEEEEEEECT
T ss_pred CCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCceeEEEEEEECC
Confidence 5535667778999999853 3321111 1112346789999996 555555532 23577776653
Q ss_pred C--c--eeEE-EecC------CCCeeEEEECCCCCEEEEeC---------------CeEEEEEcCCCe------------
Q 007234 149 G--S--LLGK-FRAS------TKGISCMAVSSDGKMLATAA---------------GQLKTFNCSDHK------------ 190 (612)
Q Consensus 149 ~--~--~~~~-~~~~------~~~v~~l~~spdg~~l~~~~---------------g~i~lwd~~~~~------------ 190 (612)
+ + .... +... ......++|.|||.+.++.+ |.|.-+|....-
T Consensus 108 ~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~~npf~~~~~~ 187 (353)
T 2g8s_A 108 DLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPDDNPFIKESGV 187 (353)
T ss_dssp TSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCTTCTTTTSTTS
T ss_pred CCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCCCCCCcCCCCC
Confidence 3 1 1121 2211 12246799999997666642 356666765320
Q ss_pred eEEEE-ecCCCCEEEEEEee-CCcEEEE
Q 007234 191 KMQKF-SGHPGAVRFMTFSD-NGKYVLS 216 (612)
Q Consensus 191 ~~~~~-~~h~~~v~~l~~sp-~~~~l~s 216 (612)
....+ .+|.. ...++|.| +|.++++
T Consensus 188 ~~~i~a~G~rn-p~gl~~d~~~g~l~~~ 214 (353)
T 2g8s_A 188 RAEIWSYGIRN-PQGMAMNPWSNALWLN 214 (353)
T ss_dssp CTTEEEECCSE-EEEEEEETTTTEEEEE
T ss_pred CccEEEEcCcC-ccceEEECCCCCEEEE
Confidence 11111 34443 57899999 6665444
No 333
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=94.88 E-value=0.97 Score=52.54 Aligned_cols=193 Identities=13% Similarity=0.154 Sum_probs=111.8
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEE
Q 007234 10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (612)
Q Consensus 10 ~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (612)
+.-.+|..+.+|.-. ..++.|+|+++...+..+.- ..++.--.|.+++ .|
T Consensus 70 sAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~-------------------~e~VvfWkWis~~----------~l 119 (1630)
T 1xi4_A 70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-------------------TDDVTFWKWISLN----------TV 119 (1630)
T ss_pred hhccCCCcceEEEec-CCeEEEeehHHhhhhccccc-------------------CCCceEEEecCCC----------ee
Confidence 334677777777654 56899999988776665431 2344556676643 33
Q ss_pred EEEECCCcEEEEEcCCCeEEEEeccCC----CCCeEEEEEecCCCEEEEEe-------cCCcEEEEECCCCceeEEEecC
Q 007234 90 VLGTGGGDVLALAVSAGQLKWRLSDCH----PGGVSAISFATHGSCIYSAG-------ADGMVCEIDPLTGSLLGKFRAS 158 (612)
Q Consensus 90 ~~gs~~g~I~vwd~~~~~~~~~~~~~h----~~~V~~l~~sp~~~~l~s~s-------~dg~v~iwd~~~~~~~~~~~~~ 158 (612)
+..+ +..|..|++........++..| ...|..-..+++.++++..| -.|.+.+|.++.+ .-+.+.+|
T Consensus 120 ~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegh 197 (1630)
T 1xi4_A 120 ALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGH 197 (1630)
T ss_pred EEEc-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-cchhhhHh
Confidence 4333 3569999997644433343444 35677777888888876544 3477888887544 23445555
Q ss_pred CCCeeEEEEC--C-CCCEEEEeC-----CeEEEEEcCCC---e-e-----EEEEecC---CCCEEEEEEeeCCcEEEEEE
Q 007234 159 TKGISCMAVS--S-DGKMLATAA-----GQLKTFNCSDH---K-K-----MQKFSGH---PGAVRFMTFSDNGKYVLSSA 218 (612)
Q Consensus 159 ~~~v~~l~~s--p-dg~~l~~~~-----g~i~lwd~~~~---~-~-----~~~~~~h---~~~v~~l~~sp~~~~l~s~s 218 (612)
......+.+. + ...+++.+. +.++|.++... . . +..+... ..-..++..++.-..++...
T Consensus 198 a~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~it 277 (1630)
T 1xi4_A 198 AASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLIT 277 (1630)
T ss_pred HhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEe
Confidence 5544444332 1 122333222 58888887543 1 1 1111111 11223456666555555555
Q ss_pred cCCCeEEEEEcCCCccc
Q 007234 219 VGERYIALWRTDGVKKQ 235 (612)
Q Consensus 219 ~~d~~i~vwd~~~~~~~ 235 (612)
.-|.+.++|+.++...
T Consensus 278 -k~G~~~~~d~~t~~~i 293 (1630)
T 1xi4_A 278 -KYGYIHLYDLETGTCI 293 (1630)
T ss_pred -cCceEEEEecccchhh
Confidence 6899999999998754
No 334
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=94.81 E-value=3.5 Score=40.80 Aligned_cols=125 Identities=13% Similarity=0.207 Sum_probs=72.6
Q ss_pred EEEEECCCcEEEEEcCCCe-EEEEec--cCCCCCeEEEEEecC---CCEEEEEec----C----CcEEEEECCCC--c--
Q 007234 89 LVLGTGGGDVLALAVSAGQ-LKWRLS--DCHPGGVSAISFATH---GSCIYSAGA----D----GMVCEIDPLTG--S-- 150 (612)
Q Consensus 89 l~~gs~~g~I~vwd~~~~~-~~~~~~--~~h~~~V~~l~~sp~---~~~l~s~s~----d----g~v~iwd~~~~--~-- 150 (612)
++++..+|.|++++ ..+. .+..+. ........+++|+|+ +..|+.+.. + ..|..|+.... .
T Consensus 42 l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~ 120 (354)
T 3a9g_A 42 YLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLK 120 (354)
T ss_dssp EEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEE
T ss_pred EEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcC
Confidence 67777789999997 3454 222211 112356899999997 556665543 3 56888886544 1
Q ss_pred ---ee-EEEecC-CCCeeEEEECCCCCEEEEeC---------------CeEEEEEcCCC---------eeEEEEecCCCC
Q 007234 151 ---LL-GKFRAS-TKGISCMAVSSDGKMLATAA---------------GQLKTFNCSDH---------KKMQKFSGHPGA 201 (612)
Q Consensus 151 ---~~-~~~~~~-~~~v~~l~~spdg~~l~~~~---------------g~i~lwd~~~~---------~~~~~~~~h~~~ 201 (612)
.+ ..+... ......++|.|||.+.++.+ |.|.-++.... ..+. -.+|..+
T Consensus 121 ~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~-a~G~rnp 199 (354)
T 3a9g_A 121 EVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIW-SYGHRNP 199 (354)
T ss_dssp EEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEE-EECCSCC
T ss_pred ccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEE-EEccCCc
Confidence 11 112211 12346799999998777642 34555555422 0111 2355544
Q ss_pred EEEEEEee-CCcEEEE
Q 007234 202 VRFMTFSD-NGKYVLS 216 (612)
Q Consensus 202 v~~l~~sp-~~~~l~s 216 (612)
..++|+| +|..+++
T Consensus 200 -~Gla~d~~~g~l~v~ 214 (354)
T 3a9g_A 200 -QGIDWHRASGVMVAT 214 (354)
T ss_dssp -CEEEECTTTCCEEEE
T ss_pred -ceEEEeCCCCCEEEE
Confidence 5799999 6765554
No 335
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=94.67 E-value=4.9 Score=41.89 Aligned_cols=257 Identities=10% Similarity=0.074 Sum_probs=137.3
Q ss_pred EEEEeCCCcEEEEECCCCcEEEEeeccCCccc-cccccccccccccccceeEEEeeec-cccc---ccccCCcEEEEEEC
Q 007234 20 FAICSGDARIKIWDTLKGQVQTEFADIASTET-TSLYGNRLEREHLSVDYTCMKWLSV-DRKK---KRKLGSSLLVLGTG 94 (612)
Q Consensus 20 las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~~~~~~~~~w~~~-~~~~---~~~~~~~~l~~gs~ 94 (612)
|.||+..|.|+|+-+-+++.+..+........ .--|+.... .-+.. .....|-.. .+.. ..+..++++++-..
T Consensus 73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk-~il~~-~~~~~~gD~HHp~~S~tdg~yDGrylfiNdk 150 (638)
T 3sbq_A 73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESR-HIMGD-SAKFLNGDCHHPHISMTDGKYDGKYLFINDK 150 (638)
T ss_dssp EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHH-HHHGG-GGGCCCCCCCCCEEEEETTEEEEEEEEEEET
T ss_pred EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHH-HHHhc-CCCccCCCcCCCcccccCCeeeeEEEEEecC
Confidence 56788899999999999999988754322110 000000000 00000 000111100 0000 00112677887775
Q ss_pred CC-cEEEEEcCCCeEEEEeccCCCCCeEEEEEe--cCCCEEEEEec-------CCcEE---------E---EECCCCcee
Q 007234 95 GG-DVLALAVSAGQLKWRLSDCHPGGVSAISFA--THGSCIYSAGA-------DGMVC---------E---IDPLTGSLL 152 (612)
Q Consensus 95 ~g-~I~vwd~~~~~~~~~~~~~h~~~V~~l~~s--p~~~~l~s~s~-------dg~v~---------i---wd~~~~~~~ 152 (612)
.. .|-..++..-++-.-+.......+.+++|- |+..+++.++. ||... + .|..+.+..
T Consensus 151 an~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v~ 230 (638)
T 3sbq_A 151 ANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEMA 230 (638)
T ss_dssp TTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSEE
T ss_pred CCcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEEE
Confidence 44 488888888777555545577889999996 78888888763 33321 1 122222211
Q ss_pred EEEecCCCCeeEEEECCCCCEEEEeC-C----------------eEEEEEcC-------CCe-------eEEEEecCC--
Q 007234 153 GKFRASTKGISCMAVSSDGKMLATAA-G----------------QLKTFNCS-------DHK-------KMQKFSGHP-- 199 (612)
Q Consensus 153 ~~~~~~~~~v~~l~~spdg~~l~~~~-g----------------~i~lwd~~-------~~~-------~~~~~~~h~-- 199 (612)
..+.. .+....+...++|++.++.+ + -+.++|++ .|+ -+..+.+..
T Consensus 231 ~Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~~~ 309 (638)
T 3sbq_A 231 FQVIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRKKD 309 (638)
T ss_dssp EEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSCBT
T ss_pred EEEEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEcccccc
Confidence 11111 12233455577888877764 1 36666642 110 122232221
Q ss_pred -------------CCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCcc-------ccceeeEeecCCceeEEeEEecCCc
Q 007234 200 -------------GAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK-------QSASCVLAMEHPAVFMDCRCIDNGG 259 (612)
Q Consensus 200 -------------~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (612)
.....+.++|||++++.++--+.++.++|+.+... ....++........-..-..|.
T Consensus 310 ~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd--- 386 (638)
T 3sbq_A 310 GKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFD--- 386 (638)
T ss_dssp TBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEEC---
T ss_pred ccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEEC---
Confidence 22356789999999999987888999999875321 0011111111122223345565
Q ss_pred cCCCCcEEEEEecCCcEEEEECCCc
Q 007234 260 VDDAGLYVLAISETGVCYIWYGQNI 284 (612)
Q Consensus 260 ~~~~~~~l~t~s~dg~i~iwd~~~~ 284 (612)
++|....+.-.|..|.-|++...
T Consensus 387 --~~G~aYTtlfidSqvvkWni~~a 409 (638)
T 3sbq_A 387 --GRGNAYTTLFIDSQVVKWNMEEA 409 (638)
T ss_dssp --SSSEEEEEETTTTEEEEEEHHHH
T ss_pred --CCCceEeeeeecceEEEEeccHH
Confidence 78855555557999999998654
No 336
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=94.49 E-value=4.1 Score=40.13 Aligned_cols=30 Identities=20% Similarity=0.134 Sum_probs=23.5
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCcE
Q 007234 10 LTSFSPALDYFAICSGDARIKIWDTLKGQV 39 (612)
Q Consensus 10 ~~~fspdg~~las~s~dg~i~iwd~~~~~~ 39 (612)
.++|.|||+++++--..|+|++++..+++.
T Consensus 36 ~ia~~pdG~llVter~~G~I~~v~~~~g~~ 65 (347)
T 3das_A 36 GLAPLPGGDLLVSSRDEATITRVDAKTGRK 65 (347)
T ss_dssp EEEECTTSCEEEEETTTCEEEEECTTTCCE
T ss_pred EEEEcCCCcEEEEEecCCEEEEEECCCCcE
Confidence 459999999777665589999998766654
No 337
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=94.43 E-value=7.4 Score=42.89 Aligned_cols=178 Identities=13% Similarity=0.135 Sum_probs=104.3
Q ss_pred CcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEe-----cCCC
Q 007234 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR-----ASTK 160 (612)
Q Consensus 86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-----~~~~ 160 (612)
...|.+|+.+| +..||..++.... ........|.++.. .+| .|+.++.+ -+..+|..+++.. .+. ....
T Consensus 73 ~g~lWigT~~G-l~~yd~~~~~f~~-~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~-~~~~~~~~l~~~ 146 (758)
T 3ott_A 73 NTYLYMGTDNG-ILVYNYRADRYEQ-PETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLT-SFDTRRNGLPNN 146 (758)
T ss_dssp TTEEEEEETTE-EEEEETTTTEECC-CSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEE-EECHHHHCCSCS
T ss_pred CCcEEEEeCCC-eEEEeCCCCEEEC-cccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEE-EeccCCCCcCCC
Confidence 45678888765 7899998875432 11112335777754 344 57777666 5888998765533 331 1234
Q ss_pred CeeEEEECCCCCEEEEeCCeEEEEEcCCCeeEEEEecC------CCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCcc
Q 007234 161 GISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGH------PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK 234 (612)
Q Consensus 161 ~v~~l~~spdg~~l~~~~g~i~lwd~~~~~~~~~~~~h------~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~ 234 (612)
.|.++...++|.+.+...+-+..+|..+++.. .+... ...|.++...+++..|..+. . +-+..++..+++.
T Consensus 147 ~i~~i~~d~~g~lWigt~~Gl~~~~~~~~~~~-~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt-~-~Gl~~~~~~~~~~ 223 (758)
T 3ott_A 147 TIYSIIRTKDNQIYVGTYNGLCRYIPSNGKFE-GIPLPVHSSQSNLFVNSLLEDTTRQCVWIGT-E-GYLFQYFPSTGQI 223 (758)
T ss_dssp CEEEEEECTTCCEEEEETTEEEEEETTTTEEE-EECCCCCTTCSSCCEEEEEEETTTTEEEEEE-E-EEEEEEETTTTEE
T ss_pred eEEEEEEcCCCCEEEEeCCCHhhCccCCCceE-EecCCCccccccceeEEEEEECCCCEEEEEE-C-CCCeEEcCCCCeE
Confidence 68899988888887765566888898776542 22211 12488887777766544444 2 3577888776542
Q ss_pred ccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCc
Q 007234 235 QSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (612)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~ 284 (612)
. ....+ ....+..+... .+|.+. .|+.+ -+.+++..+.
T Consensus 224 ~---~~~~l--~~~~i~~i~~d-----~~g~lW-igT~~-Gl~~~~~~~~ 261 (758)
T 3ott_A 224 K---QTEAF--HNNSIKSLALD-----GNGDLL-AGTDN-GLYVYHNDTT 261 (758)
T ss_dssp E---EEEEE--EEEEEEEEEEC-----TTCCEE-EEETT-EEEEECCTTS
T ss_pred E---eccCC--CCCeEEEEEEc-----CCCCEE-EEeCC-ceeEEecCCC
Confidence 2 11111 12234444443 555544 44544 4777876654
No 338
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=94.42 E-value=1.5 Score=43.38 Aligned_cols=98 Identities=12% Similarity=0.174 Sum_probs=61.3
Q ss_pred CCeEEEEEecCCCEEEEEecCCcEEEEECCCCcee--EEEe---cCCCCeeEEEECCC---CCEEEEeC--------CeE
Q 007234 118 GGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLL--GKFR---ASTKGISCMAVSSD---GKMLATAA--------GQL 181 (612)
Q Consensus 118 ~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~--~~~~---~~~~~v~~l~~spd---g~~l~~~~--------g~i 181 (612)
....+++|.|+|+ ++.+..+|.|++++ .++.. ..+. ........|+++|+ +..|+++. +.|
T Consensus 31 ~~P~~ia~~pdG~-l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 31 EVPWALAFLPDGG-MLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp SCEEEEEECTTSC-EEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred CCceEEEEcCCCe-EEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence 3568999999998 55556779999998 45421 1111 12347899999998 55554433 467
Q ss_pred EEEEcCCCe-----e-EEEEe---cCCCCEEEEEEeeCCcEEEEEE
Q 007234 182 KTFNCSDHK-----K-MQKFS---GHPGAVRFMTFSDNGKYVLSSA 218 (612)
Q Consensus 182 ~lwd~~~~~-----~-~~~~~---~h~~~v~~l~~sp~~~~l~s~s 218 (612)
..|+...+. . +..+. +.......++|.|||.+.++.+
T Consensus 108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 153 (352)
T 2ism_A 108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG 153 (352)
T ss_dssp EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence 778876431 1 22233 1112235899999997666543
No 339
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=94.28 E-value=5.6 Score=40.88 Aligned_cols=30 Identities=13% Similarity=0.145 Sum_probs=22.0
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCcE
Q 007234 10 LTSFSPALDYFAICSGDARIKIWDTLKGQV 39 (612)
Q Consensus 10 ~~~fspdg~~las~s~dg~i~iwd~~~~~~ 39 (612)
.++|.|||+++++-...+.|++++..++..
T Consensus 31 ~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~ 60 (454)
T 1cru_A 31 ALLWGPDNQIWLTERATGKILRVNPESGSV 60 (454)
T ss_dssp EEEECTTSCEEEEETTTCEEEEECTTTCCE
T ss_pred EEEEcCCCcEEEEEcCCCEEEEEECCCCcE
Confidence 569999999777654445788888765654
No 340
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=93.82 E-value=0.79 Score=41.75 Aligned_cols=92 Identities=12% Similarity=0.166 Sum_probs=49.3
Q ss_pred CcEEEEEECCCcEEEEEcCCCeEE-E-----EeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCc------eeE
Q 007234 86 SSLLVLGTGGGDVLALAVSAGQLK-W-----RLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS------LLG 153 (612)
Q Consensus 86 ~~~l~~gs~~g~I~vwd~~~~~~~-~-----~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~------~~~ 153 (612)
+.+.++ .||.|.-++..+...- + .+-.+-=..+..|.|.|+|.+.+.. |+.++-+...++. ...
T Consensus 99 G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~ 174 (236)
T 1tl2_A 99 GYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARAT 174 (236)
T ss_dssp SCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCE
T ss_pred CCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccc
Confidence 555555 6699887776432111 0 1101111467999999999755444 8876554333221 111
Q ss_pred EEe-cCCCCeeEEEECCCCCEEEEeCCeE
Q 007234 154 KFR-ASTKGISCMAVSSDGKMLATAAGQL 181 (612)
Q Consensus 154 ~~~-~~~~~v~~l~~spdg~~l~~~~g~i 181 (612)
.+- ..-....-+.|.|+|.+.++..|.+
T Consensus 175 ~~g~~g~~~yr~l~f~~~G~l~~v~~g~~ 203 (236)
T 1tl2_A 175 KIGQGGWDTFKFLFFSSVGTLFGVQGGKF 203 (236)
T ss_dssp EEESSSGGGEEEEEECTTSCEEEEETTEE
T ss_pred eeccCCcceEEEEEECCCCcEEEEeCCeE
Confidence 111 1222445566888888777665543
No 341
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=93.38 E-value=1.7 Score=42.82 Aligned_cols=137 Identities=12% Similarity=0.011 Sum_probs=62.6
Q ss_pred CcEEEEEcCCCeEEEEeccCCCCCe-EEEEEecCCCEEEEEec------CCcEEEEEC--CCCceeE--EEecCCCCeeE
Q 007234 96 GDVLALAVSAGQLKWRLSDCHPGGV-SAISFATHGSCIYSAGA------DGMVCEIDP--LTGSLLG--KFRASTKGISC 164 (612)
Q Consensus 96 g~I~vwd~~~~~~~~~~~~~h~~~V-~~l~~sp~~~~l~s~s~------dg~v~iwd~--~~~~~~~--~~~~~~~~v~~ 164 (612)
..+.+||+.+++-...-.......- .+++.. +++.++.|+. ...+.++|+ .+.+-.. .+........+
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~ 246 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGG 246 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSC
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccc
Confidence 4699999988764322111111111 223322 5556666653 345777876 3332211 11111111121
Q ss_pred EEECCCCCEEEEeC-C-----------------------eEEEEEcCCCee--EEEEecCCCCEEEEEEeeCCcEEEEEE
Q 007234 165 MAVSSDGKMLATAA-G-----------------------QLKTFNCSDHKK--MQKFSGHPGAVRFMTFSDNGKYVLSSA 218 (612)
Q Consensus 165 l~~spdg~~l~~~~-g-----------------------~i~lwd~~~~~~--~~~~~~h~~~v~~l~~sp~~~~l~s~s 218 (612)
.+...++++++.|+ . .+.+||+.+.+- +..++..... ..+..-+++.++.+|
T Consensus 247 ~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~--~~~~~~~~~i~v~GG 324 (357)
T 2uvk_A 247 FAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAY--GVSLPWNNSLLIIGG 324 (357)
T ss_dssp EEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBS--SEEEEETTEEEEEEE
T ss_pred eEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCccc--ceeEEeCCEEEEEee
Confidence 12223566777665 1 478899887643 3333222221 122345677777777
Q ss_pred cCC-----CeEEEEEcCCCccc
Q 007234 219 VGE-----RYIALWRTDGVKKQ 235 (612)
Q Consensus 219 ~~d-----~~i~vwd~~~~~~~ 235 (612)
... ..+.++++++++..
T Consensus 325 ~~~~~~~~~~v~~l~~~~~~~~ 346 (357)
T 2uvk_A 325 ETAGGKAVTDSVLITVKDNKVT 346 (357)
T ss_dssp ECGGGCEEEEEEEEEC-CCSCE
T ss_pred eCCCCCEeeeEEEEEEcCcEeE
Confidence 321 13555577776643
No 342
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=93.11 E-value=6.1 Score=43.13 Aligned_cols=148 Identities=8% Similarity=0.005 Sum_probs=79.8
Q ss_pred CcEEEEEECCC------cEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCC--cEEEEECCCCceeEEE--
Q 007234 86 SSLLVLGTGGG------DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADG--MVCEIDPLTGSLLGKF-- 155 (612)
Q Consensus 86 ~~~l~~gs~~g------~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg--~v~iwd~~~~~~~~~~-- 155 (612)
+.+++.|+.++ ++.+||+.++.-...-.......-.+.+...+++.++.|+.++ .+.+||..+.+-...-
T Consensus 452 ~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~ 531 (695)
T 2zwa_A 452 NQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPK 531 (695)
T ss_dssp TEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCS
T ss_pred CEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCC
Confidence 66777777543 4889999887543211000111112233324778888887654 6999998876532221
Q ss_pred ---ecCCCCeeEEEECCC-CCEEEEeC---------CeEEEEEcCCCee-----EEEEec---CCCCEEEEEEeeCCcEE
Q 007234 156 ---RASTKGISCMAVSSD-GKMLATAA---------GQLKTFNCSDHKK-----MQKFSG---HPGAVRFMTFSDNGKYV 214 (612)
Q Consensus 156 ---~~~~~~v~~l~~spd-g~~l~~~~---------g~i~lwd~~~~~~-----~~~~~~---h~~~v~~l~~sp~~~~l 214 (612)
........++.+..+ +++++.|+ +.+.+||+.+.+. ...+.. ....-.++....+++.+
T Consensus 532 g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iy 611 (695)
T 2zwa_A 532 DEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLL 611 (695)
T ss_dssp SGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEE
T ss_pred CCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEE
Confidence 112223344566655 66777765 2589999988761 222221 11111223334446666
Q ss_pred EEEEcC-------CCeEEEEEcCCCc
Q 007234 215 LSSAVG-------ERYIALWRTDGVK 233 (612)
Q Consensus 215 ~s~s~~-------d~~i~vwd~~~~~ 233 (612)
+.+|.. ...+.+||+.+..
T Consensus 612 v~GG~~~~~~~~~~~~v~~yd~~t~~ 637 (695)
T 2zwa_A 612 IVGGTSPSGLFDRTNSIISLDPLSET 637 (695)
T ss_dssp EECCBCSSCCCCTTTSEEEEETTTTE
T ss_pred EECCccCCCCCCCCCeEEEEECCCCe
Confidence 666521 2357788877654
No 343
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=92.92 E-value=3.5 Score=45.07 Aligned_cols=147 Identities=8% Similarity=0.061 Sum_probs=80.3
Q ss_pred CcEEEEEECC----CcEEEEEcCCCeEEEEe-c-----cCCCCCeEEEEEec-CCCEEEEEecC------CcEEEEECCC
Q 007234 86 SSLLVLGTGG----GDVLALAVSAGQLKWRL-S-----DCHPGGVSAISFAT-HGSCIYSAGAD------GMVCEIDPLT 148 (612)
Q Consensus 86 ~~~l~~gs~~----g~I~vwd~~~~~~~~~~-~-----~~h~~~V~~l~~sp-~~~~l~s~s~d------g~v~iwd~~~ 148 (612)
+.+++.|+.+ .++.+||+.+++-...- . ......-.+++..+ +++.++.||.+ ..+.+||..+
T Consensus 398 ~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t 477 (695)
T 2zwa_A 398 NDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKT 477 (695)
T ss_dssp SCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTT
T ss_pred CEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCC
Confidence 5667777653 45899999887654222 1 00111112333333 67777777643 3578899887
Q ss_pred CceeEE--EecCCCCeeEEEECCCCCEEEEeC----CeEEEEEcCCCeeEEEE-----ecCCCCEEEEEEeeC-CcEEEE
Q 007234 149 GSLLGK--FRASTKGISCMAVSSDGKMLATAA----GQLKTFNCSDHKKMQKF-----SGHPGAVRFMTFSDN-GKYVLS 216 (612)
Q Consensus 149 ~~~~~~--~~~~~~~v~~l~~spdg~~l~~~~----g~i~lwd~~~~~~~~~~-----~~h~~~v~~l~~sp~-~~~l~s 216 (612)
.+-... +...... .+++...++++++.|+ +.+.+||..+.+-...- +........+.+..+ ++.++.
T Consensus 478 ~~W~~~~~~p~~R~~-h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~ 556 (695)
T 2zwa_A 478 REWSMIKSLSHTRFR-HSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIIL 556 (695)
T ss_dssp TEEEECCCCSBCCBS-CEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEE
T ss_pred CcEEECCCCCCCccc-ceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEE
Confidence 543221 2211112 2334434788888887 27999999887643211 111111223455554 556666
Q ss_pred EEcC-C-----CeEEEEEcCCCc
Q 007234 217 SAVG-E-----RYIALWRTDGVK 233 (612)
Q Consensus 217 ~s~~-d-----~~i~vwd~~~~~ 233 (612)
+|.. + ..+.+||+.+..
T Consensus 557 GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 557 GGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp CCBCTTSSCBCCEEEEEEECTTC
T ss_pred CCcCCCCCeeeCcEEEEEccCCc
Confidence 6531 1 358899988776
No 344
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=92.78 E-value=7.2 Score=37.50 Aligned_cols=133 Identities=9% Similarity=0.108 Sum_probs=78.5
Q ss_pred CcEEEEEE--CCCc--EEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEec-CCcEEEEECCCCceeEEEecCCC
Q 007234 86 SSLLVLGT--GGGD--VLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA-DGMVCEIDPLTGSLLGKFRASTK 160 (612)
Q Consensus 86 ~~~l~~gs--~~g~--I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~-dg~v~iwd~~~~~~~~~~~~~~~ 160 (612)
++.|+... .++. |...++..... .++.. +.. ..|+|+++.|+-.+. ...|...++..+.....+. +
T Consensus 115 g~~Iy~~~~~~~~~~~Iy~~~~dGs~~-~~lt~-~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~---~ 185 (302)
T 3s25_A 115 GNYIYYLHYDTQTATSLYRIRIDGEEK-KKIKN-HYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD---C 185 (302)
T ss_dssp TTEEEEEEESSSSCEEEEEEETTSCCC-EEEES-SCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC---S
T ss_pred CCEEEEEeecCCCCceEEEEECCCCCe-EEEeC-CCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC---C
Confidence 55666665 3344 66666654333 23432 322 456788888776654 6789998987665444333 2
Q ss_pred CeeEEEECCCCCEEEEeC----CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEc-CCCeEEEEEcCCCc
Q 007234 161 GISCMAVSSDGKMLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV-GERYIALWRTDGVK 233 (612)
Q Consensus 161 ~v~~l~~spdg~~l~~~~----g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~-~d~~i~vwd~~~~~ 233 (612)
... ..++|++.+|+-.. ..|..-++.... ...+. ...+ ..|+|++.+|+.+.. ....|..-+++...
T Consensus 186 ~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~-~~~Lt--~~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~ 257 (302)
T 3s25_A 186 NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPN-PVVLT--EANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGTG 257 (302)
T ss_dssp CEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCC-CEECS--CSCE--EEEEEETTEEEEEECSSSCEEEEEETTSCC
T ss_pred Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCCCC-eEEEe--CCCc--ceEEECCCEEEEEECCCCcEEEEEECCCCc
Confidence 222 34669999888665 367777776554 33343 2233 348888998887632 23566666666554
No 345
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=92.44 E-value=8 Score=37.18 Aligned_cols=123 Identities=11% Similarity=0.065 Sum_probs=74.2
Q ss_pred CcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEe----cCCcEEEEECCCCceeEEEecCCCCeeEEEECCCC
Q 007234 96 GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG----ADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDG 171 (612)
Q Consensus 96 g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s----~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg 171 (612)
+.|+..++..++.. .+.. .. +..|+++++.|+-+. .+..|+..++.. .....+..+.. ..++|++
T Consensus 88 ~~Iy~i~~dg~~~~-~l~~---~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dG-s~~~~lt~~~~----~~~~~~g 156 (302)
T 3s25_A 88 NSLCRIKRNGHGST-VLDP---DP--CIYASLIGNYIYYLHYDTQTATSLYRIRIDG-EEKKKIKNHYL----FTCNTSD 156 (302)
T ss_dssp EEEEEEETTSCCCE-EEEC---SC--EEEEEEETTEEEEEEESSSSCEEEEEEETTS-CCCEEEESSCC----CCSEEET
T ss_pred CeEEEEeCCCCcce-Eeec---CC--ccEEEEeCCEEEEEeecCCCCceEEEEECCC-CCeEEEeCCCc----eEeeEEC
Confidence 35777787776543 2221 12 236788888888765 344677777764 33444443332 4567788
Q ss_pred CEEEEeC---CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCC-CeEEEEEcCCCc
Q 007234 172 KMLATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE-RYIALWRTDGVK 233 (612)
Q Consensus 172 ~~l~~~~---g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d-~~i~vwd~~~~~ 233 (612)
+.|+-.+ ..|+..++..+.....+. +... ..++|++.+|+-+...+ ..|..-+++...
T Consensus 157 ~~iy~t~~g~~~Iy~~~l~g~~~~~l~~---~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~ 218 (302)
T 3s25_A 157 RYFYYNNPKNGQLYRYDTASQSEALFYD---CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPN 218 (302)
T ss_dssp TEEEEECTTTCCEEEEETTTTEEEEEEC---SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCC
T ss_pred CEEEEEeCCCceEEEEECCCCCEEEEeC---CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCC
Confidence 8888665 689998987776543333 2222 34669999888775323 256666666554
No 346
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=90.00 E-value=26 Score=38.48 Aligned_cols=143 Identities=15% Similarity=0.120 Sum_probs=85.2
Q ss_pred CcEEEEEECCCcEEEEEcCC------CeEE--EEec--cC-CCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEE
Q 007234 86 SSLLVLGTGGGDVLALAVSA------GQLK--WRLS--DC-HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK 154 (612)
Q Consensus 86 ~~~l~~gs~~g~I~vwd~~~------~~~~--~~~~--~~-h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~ 154 (612)
...|-+|+..+-+.++|..+ +... ..+. .+ ....|.++...++|...+.++..+-+..+|..+++....
T Consensus 429 ~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~~ 508 (758)
T 3ott_A 429 AGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVTKL 508 (758)
T ss_dssp TSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEEEE
T ss_pred CCCEEEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEEe
Confidence 45677888877788998653 1111 1111 11 123589998888887555344445588899877654432
Q ss_pred Eec-C--CCCeeEEEECCCCCEEEEeCCeEEEEEcCCCeeEEEE--ec-CCCCEEEEEEeeCCcEEEEEEcCCCeEEEEE
Q 007234 155 FRA-S--TKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKF--SG-HPGAVRFMTFSDNGKYVLSSAVGERYIALWR 228 (612)
Q Consensus 155 ~~~-~--~~~v~~l~~spdg~~l~~~~g~i~lwd~~~~~~~~~~--~~-h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd 228 (612)
... . ...+.++....+|.+.+...+-+..||.++++.. .+ .+ ....|.++.. .+|...+ ++ ..| +..+|
T Consensus 509 ~~~~~~~~~~~~~i~~d~~g~lWigt~~Gl~~~~~~~~~~~-~~~~~gl~~~~i~~i~~-~~g~lWi-~t-~~G-l~~~~ 583 (758)
T 3ott_A 509 FADELTGEKSPNYLLCDEDGLLWVGFHGGVMRINPKDESQQ-SISFGSFSNNEILSMTC-VKNSIWV-ST-TNG-LWIID 583 (758)
T ss_dssp CTTTSCGGGCEEEEEECTTSCEEEEETTEEEEECC--CCCC-BCCCCC---CCEEEEEE-ETTEEEE-EE-SSC-EEEEE
T ss_pred cCCCcCCCcccceEEECCCCCEEEEecCceEEEecCCCceE-EecccCCCccceEEEEE-CCCCEEE-EC-CCC-eEEEc
Confidence 211 1 2357888888899888776666888887765432 11 11 1245777766 4676544 44 355 77788
Q ss_pred cCCCc
Q 007234 229 TDGVK 233 (612)
Q Consensus 229 ~~~~~ 233 (612)
..+.+
T Consensus 584 ~~~~~ 588 (758)
T 3ott_A 584 RKTMD 588 (758)
T ss_dssp TTTCC
T ss_pred CCCce
Confidence 87654
No 347
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=87.72 E-value=26 Score=35.74 Aligned_cols=101 Identities=10% Similarity=0.201 Sum_probs=60.8
Q ss_pred CCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeE--EEec------CCCCeeEEEECCC---CCEEEEeC--------
Q 007234 118 GGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLG--KFRA------STKGISCMAVSSD---GKMLATAA-------- 178 (612)
Q Consensus 118 ~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~--~~~~------~~~~v~~l~~spd---g~~l~~~~-------- 178 (612)
...++++|.|+|+++++-...+.|++++..+++... .+.. ....+..|+|+|+ +..|.++.
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 456799999999866654333479988865554322 2221 2346779999995 44444332
Q ss_pred -------CeEEEEEcCCC-------eeE-EEEec-CCCCEEEEEEeeCCcEEEEEE
Q 007234 179 -------GQLKTFNCSDH-------KKM-QKFSG-HPGAVRFMTFSDNGKYVLSSA 218 (612)
Q Consensus 179 -------g~i~lwd~~~~-------~~~-~~~~~-h~~~v~~l~~sp~~~~l~s~s 218 (612)
..|.-|+...+ +.+ ..+.. .......|+|.|||.+.++.+
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 14555554322 112 12321 123468899999999777765
No 348
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=85.51 E-value=29 Score=33.98 Aligned_cols=128 Identities=13% Similarity=0.207 Sum_probs=73.0
Q ss_pred CcEEEEEEC-CCcEEEEEcCCCeEE--EEe---ccCCCCCeEEEEEecC---CCEEEEE---ecCCcEEEEECCCC----
Q 007234 86 SSLLVLGTG-GGDVLALAVSAGQLK--WRL---SDCHPGGVSAISFATH---GSCIYSA---GADGMVCEIDPLTG---- 149 (612)
Q Consensus 86 ~~~l~~gs~-~g~I~vwd~~~~~~~--~~~---~~~h~~~V~~l~~sp~---~~~l~s~---s~dg~v~iwd~~~~---- 149 (612)
+.+ +++.. .|.|++++...+... ..+ .........+++|+|+ +..|+.. ..++.|.-|....+
T Consensus 43 G~l-lVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~ 121 (347)
T 3das_A 43 GDL-LVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRMLYDEKKPSG 121 (347)
T ss_dssp SCE-EEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTT
T ss_pred CcE-EEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEEEeCCCCccc
Confidence 554 44555 899999987666542 111 1123467899999995 4455543 24556777766542
Q ss_pred ------cee-EEEec-CCCCeeEEEECCCCCEEEEeC---------------CeEEEEEcCCC---------eeEEEEec
Q 007234 150 ------SLL-GKFRA-STKGISCMAVSSDGKMLATAA---------------GQLKTFNCSDH---------KKMQKFSG 197 (612)
Q Consensus 150 ------~~~-~~~~~-~~~~v~~l~~spdg~~l~~~~---------------g~i~lwd~~~~---------~~~~~~~~ 197 (612)
+.+ ..+.. ....-..|.|.|||.+.++.+ |.|.-++.... ..+. -.|
T Consensus 122 ~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf~~~~i~-a~G 200 (347)
T 3das_A 122 EQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPFPGSPVY-SYG 200 (347)
T ss_dssp CCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSSTTCCEE-EBC
T ss_pred ccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCCCCCeEE-eeC
Confidence 111 11221 112346799999998777632 34544454322 1111 135
Q ss_pred CCCCEEEEEEeeCCcEEEE
Q 007234 198 HPGAVRFMTFSDNGKYVLS 216 (612)
Q Consensus 198 h~~~v~~l~~sp~~~~l~s 216 (612)
|.++ ..++|.|+|.++++
T Consensus 201 ~RNp-~Gla~dp~G~L~~~ 218 (347)
T 3das_A 201 HRNV-QGLAWDDKQRLFAS 218 (347)
T ss_dssp CSBC-CEEEECTTCCEEEE
T ss_pred CCCc-ceEEECCCCCEEEE
Confidence 6554 57899998876554
No 349
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=80.69 E-value=38 Score=31.84 Aligned_cols=186 Identities=14% Similarity=0.134 Sum_probs=101.7
Q ss_pred CcEEEEEECCCcEEE---EEcCCCeEEEEeccCCCCCeEEEEEec--CCCEEEEEecCCcEEEEECCCCc------eeEE
Q 007234 86 SSLLVLGTGGGDVLA---LAVSAGQLKWRLSDCHPGGVSAISFAT--HGSCIYSAGADGMVCEIDPLTGS------LLGK 154 (612)
Q Consensus 86 ~~~l~~gs~~g~I~v---wd~~~~~~~~~~~~~h~~~V~~l~~sp--~~~~l~s~s~dg~v~iwd~~~~~------~~~~ 154 (612)
...++.-++.|.++- |++..+.... ++ .....|.++.. + +...++.++.+|.++...+.... ....
T Consensus 35 ~~~ll~fT~~G~v~~~~~~~lp~~~~~~-ll-~~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~ 111 (276)
T 3no0_A 35 TEGLFLVSNRGRVYWIAGSQALQGSKVS-LK-SREEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIK 111 (276)
T ss_dssp TSCEEEEETTSEEEEECSHHHHTSEECC-CS-STTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSC
T ss_pred CCEEEEEcCCCeEEEEEhhhCccCcccc-cC-CCCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEe
Confidence 456778888888553 5544332211 22 23556776644 4 46789999999999999865432 1222
Q ss_pred EecCCCCeeEEEECCCC-CEEEEeC-CeEEEEEcCC---------CeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCe
Q 007234 155 FRASTKGISCMAVSSDG-KMLATAA-GQLKTFNCSD---------HKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERY 223 (612)
Q Consensus 155 ~~~~~~~v~~l~~spdg-~~l~~~~-g~i~lwd~~~---------~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~ 223 (612)
++. .+.+..+....+. ..++... |.++.++... |...-.+.. ...|..+...+++.+++..+ ..|.
T Consensus 112 lke-gD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~-~d~vv~~~~~~~~~~ll~~T-~~G~ 188 (276)
T 3no0_A 112 LTE-GDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEK-NDETSGLRIWNGEPYLLVIT-AKGR 188 (276)
T ss_dssp CCT-TCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCT-TCCEEEEEEESSCSEEEEEE-TTSC
T ss_pred cCC-CCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCC-CCEEEEEEEeCCCCEEEEEe-CCCc
Confidence 332 2345555444433 3444444 8877776532 222222322 34566665555566777776 6898
Q ss_pred EEEEEcCCCcccc--ceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEE--EECCC
Q 007234 224 IALWRTDGVKKQS--ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYI--WYGQN 283 (612)
Q Consensus 224 i~vwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~i--wd~~~ 283 (612)
++...+..-.... ..-+..+......+..... .+...++..+.+|.+.. ++...
T Consensus 189 ~kr~~~~e~~~~~R~gkGv~~i~~~~~lv~~~~~------~~~~~i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 189 VKKISHEEIPKTNRGVKGTEVSGTKDTLVDLIPI------KEEVELLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp EEEEEGGGSCCCCTTCCCEECCCSSSCEEEEEEE------SSEEEEEEEETTSCEEEEEEEGGG
T ss_pred EEEeEHHHcccCCCCCcceEEEcCCCcEEEEEEe------CCCCEEEEEcCCCeEEEeeeCHHH
Confidence 8888875432111 0112222333334433333 23356777788888777 77543
No 350
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=76.57 E-value=51 Score=31.00 Aligned_cols=173 Identities=15% Similarity=0.143 Sum_probs=88.4
Q ss_pred EEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEEEEC
Q 007234 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVS 168 (612)
Q Consensus 89 l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~s 168 (612)
+++ + +|.|+.|-....-.+. +.......|..++...+. .++. . ||.|+.|-....-++..-..-...|..++..
T Consensus 37 ~~l-~-~G~v~~wG~n~~Gqlg-~p~~~~~~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G 110 (282)
T 3qhy_B 37 LAL-K-GGKVLGWGANLNGQLT-MPAATQSGVDAIAAGNYH-SLAL-K-DGEVIAWGGNEDGQTTVPAEARSGVDAIAAG 110 (282)
T ss_dssp EEE-E-TTEEEEEECCSSSTTS-CCGGGGSCCCEEEECSSE-EEEE-E-TTEEEEEECCTTSTTCCCGGGSSSEEEEEEE
T ss_pred EEE-E-CCEEEEEeCCCCCCCC-CCccCCCCEEEEEeCCCE-EEEE-E-CCEEEEeeCCCCCCCCCCcccCCCeEEEECc
Confidence 444 5 8999999765432211 111122356777664332 2333 4 8999999754322111111112467788877
Q ss_pred CCCCEEEEeCCeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCce
Q 007234 169 SDGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAV 248 (612)
Q Consensus 169 pdg~~l~~~~g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 248 (612)
.+...+++ .|.|+.|-....-.+.........|..++...+ +.+.- . |+.|..|-........ + .......
T Consensus 111 ~~hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~--~~~~l-~-~G~v~~wG~n~~gqlg---~-p~~~~~~ 181 (282)
T 3qhy_B 111 AWASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVY--TALAV-K-NGGVIAWGDNYFGQTT---V-PAEAQSG 181 (282)
T ss_dssp TTEEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSS--EEEEE-E-TTEEEEEECCTTSTTS---C-CGGGGSS
T ss_pred CCEEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccC--EEEEE-E-CCEEEEecCCCCCCCC---C-ceecCCC
Confidence 77667777 889999965432111111112345666655433 22322 2 6889999876533221 0 0011122
Q ss_pred eEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcc
Q 007234 249 FMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE 285 (612)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~ 285 (612)
+..+. . ...+.++. .||.|+.|-....-
T Consensus 182 v~~i~-~-------G~~hs~al-~~G~v~~wG~n~~g 209 (282)
T 3qhy_B 182 VDDVA-G-------GIFHSLAL-KDGKVIAWGDNRYK 209 (282)
T ss_dssp EEEEE-E-------CSSEEEEE-ETTEEEEEECCTTS
T ss_pred eEEEE-e-------cCCEEEEE-ECCeEEEEECCCCC
Confidence 22222 2 22333444 69999999765443
No 351
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=75.85 E-value=80 Score=35.66 Aligned_cols=38 Identities=11% Similarity=0.071 Sum_probs=33.3
Q ss_pred CeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEe
Q 007234 119 GVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR 156 (612)
Q Consensus 119 ~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~ 156 (612)
.+.++...++..++++-+.|+++|+|++.+++++.+..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 46777788888899999999999999999999988754
No 352
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=74.76 E-value=69 Score=31.66 Aligned_cols=138 Identities=9% Similarity=0.054 Sum_probs=80.3
Q ss_pred cEEEEECCCC--ceeEEEecC------CCCeeEEEEC---CC----CCEEEEeC---CeEEEEEcCCCeeEEEEec----
Q 007234 140 MVCEIDPLTG--SLLGKFRAS------TKGISCMAVS---SD----GKMLATAA---GQLKTFNCSDHKKMQKFSG---- 197 (612)
Q Consensus 140 ~v~iwd~~~~--~~~~~~~~~------~~~v~~l~~s---pd----g~~l~~~~---g~i~lwd~~~~~~~~~~~~---- 197 (612)
.|.+||+.++ +.++.+.-. ...+..+++. |+ +.++..++ +-|.++|+.+++..+.+..
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 5788999998 888887542 2357788887 32 34555554 6899999999876654421
Q ss_pred ----------C----CCCEEEEEEeeC----CcEEEEEEcCCCeEEEEEcCCCcccc---ceeeEeecCCc--eeEEeEE
Q 007234 198 ----------H----PGAVRFMTFSDN----GKYVLSSAVGERYIALWRTDGVKKQS---ASCVLAMEHPA--VFMDCRC 254 (612)
Q Consensus 198 ----------h----~~~v~~l~~sp~----~~~l~s~s~~d~~i~vwd~~~~~~~~---~~~~~~~~~~~--~~~~~~~ 254 (612)
. ...+..|+++|+ ++.|+.+..... ++|.+.+.-... ...+..+.... .-.....
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~--~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~ 281 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAI--KVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALA 281 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCS--EEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCC--cEEEEEHHHhhCcchhhceEEeeecCCCCCcceEE
Confidence 0 135778899998 777777764333 455543321110 01111121111 1111222
Q ss_pred ecCCccCCCCcEEEEEecCCcEEEEECCC
Q 007234 255 IDNGGVDDAGLYVLAISETGVCYIWYGQN 283 (612)
Q Consensus 255 ~~~~~~~~~~~~l~t~s~dg~i~iwd~~~ 283 (612)
+. ..+|.++++--..+.|..|+..+
T Consensus 282 ~D----~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 282 YD----PKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp EC----TTTCEEEEEESSSSEEEEEETTS
T ss_pred Ee----CCCCeEEEEeccCCeEEEEeCCC
Confidence 31 14666677777778899998654
No 353
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=73.34 E-value=61 Score=30.42 Aligned_cols=174 Identities=14% Similarity=0.132 Sum_probs=86.1
Q ss_pred cEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEEE
Q 007234 87 SLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMA 166 (612)
Q Consensus 87 ~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~ 166 (612)
..+++ . +|.|+.|-....-.+. +...-...|..++...+ +.+.-. ||.|+.|-....-++..-......|..++
T Consensus 74 hs~~l-~-~G~v~~wG~n~~Gqlg-~P~~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~ 147 (282)
T 3qhy_B 74 HSLAL-K-DGEVIAWGGNEDGQTT-VPAEARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALD 147 (282)
T ss_dssp EEEEE-E-TTEEEEEECCTTSTTC-CCGGGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEE
T ss_pred EEEEE-E-CCEEEEeeCCCCCCCC-CCcccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEE
Confidence 34455 5 8999999765422211 11111246777776543 333344 99999997543221111111223566776
Q ss_pred ECCCCCEEEEeCCeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCC
Q 007234 167 VSSDGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP 246 (612)
Q Consensus 167 ~spdg~~l~~~~g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 246 (612)
...+...+++ +|.|+.|-......+..-..-...|..++...+.. +.- .|+.|..|-........ .. ....
T Consensus 148 ~G~~~~~~l~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~hs--~al--~~G~v~~wG~n~~gqlg-~p---~~~~ 218 (282)
T 3qhy_B 148 GGVYTALAVK-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFHS--LAL--KDGKVIAWGDNRYKQTT-VP---TEAL 218 (282)
T ss_dssp ECSSEEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEE--EEE--ETTEEEEEECCTTSTTC-CC---GGGG
T ss_pred cccCEEEEEE-CCEEEEecCCCCCCCCCceecCCCeEEEEecCCEE--EEE--ECCeEEEEECCCCCCCC-CC---cccC
Confidence 6654444444 68888886543211110011124576666544332 222 28999999866543221 00 0111
Q ss_pred ceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCc
Q 007234 247 AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (612)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~ 284 (612)
..+..+. . ...+.++.+ ||.|+.|-....
T Consensus 219 ~~v~~i~-~-------G~~h~~al~-~g~v~~wG~n~~ 247 (282)
T 3qhy_B 219 SGVSAIA-S-------GEWYSLALK-NGKVIAWGSSRT 247 (282)
T ss_dssp SSCCEEE-E-------CSSCEEEEE-TTEEEEESTTCC
T ss_pred CCceEEE-c-------CCCEEEEEE-CCEEEEecCCCC
Confidence 1222222 2 223334444 999999975543
No 354
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=73.06 E-value=26 Score=35.84 Aligned_cols=101 Identities=12% Similarity=0.180 Sum_probs=61.3
Q ss_pred CCeEEEEEecCCC-EEEEEecCCcEEEEECCCC---ceeEEEec---------CCCCeeEEEECCC----CCEEEEeC--
Q 007234 118 GGVSAISFATHGS-CIYSAGADGMVCEIDPLTG---SLLGKFRA---------STKGISCMAVSSD----GKMLATAA-- 178 (612)
Q Consensus 118 ~~V~~l~~sp~~~-~l~s~s~dg~v~iwd~~~~---~~~~~~~~---------~~~~v~~l~~spd----g~~l~~~~-- 178 (612)
..-++|+|.|+|. .++++...|.|++++.... ..+..+.. .......|+++|+ +.+.++-+
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 3468999999995 4666678999999975322 12222211 1357889999996 44444322
Q ss_pred -C-----------eEEEEEcCC----------CeeEEEEe--cCCCCEEEEEEeeCCcEEEEEE
Q 007234 179 -G-----------QLKTFNCSD----------HKKMQKFS--GHPGAVRFMTFSDNGKYVLSSA 218 (612)
Q Consensus 179 -g-----------~i~lwd~~~----------~~~~~~~~--~h~~~v~~l~~sp~~~~l~s~s 218 (612)
+ .|.-|.+.. .+.+..+. ........|.|.|||.+.++.+
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~G 157 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILG 157 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEEC
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeC
Confidence 1 344455532 23333333 2223467899999998877776
No 355
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=64.73 E-value=9.3 Score=43.35 Aligned_cols=37 Identities=19% Similarity=0.191 Sum_probs=32.9
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEee
Q 007234 8 DILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFA 44 (612)
Q Consensus 8 ~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~ 44 (612)
.++++..++..++.+-+.|+++|||++.+++++.+..
T Consensus 238 ~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 238 IISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp EEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred EEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 3677888899999999999999999999999998764
No 356
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=64.44 E-value=1e+02 Score=35.59 Aligned_cols=38 Identities=11% Similarity=0.071 Sum_probs=32.1
Q ss_pred CeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEe
Q 007234 119 GVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR 156 (612)
Q Consensus 119 ~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~ 156 (612)
.+.+++..++..++++-+.|+++|+|++.+++++.+..
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 44556667788899999999999999999999988854
No 357
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=64.37 E-value=1.1e+02 Score=30.07 Aligned_cols=133 Identities=10% Similarity=0.157 Sum_probs=82.5
Q ss_pred cEEEEEcCCC--eEEEEeccC-----CCCCeEEEEEe---cC----CCEEEEEe-cCCcEEEEECCCCceeEEEec----
Q 007234 97 DVLALAVSAG--QLKWRLSDC-----HPGGVSAISFA---TH----GSCIYSAG-ADGMVCEIDPLTGSLLGKFRA---- 157 (612)
Q Consensus 97 ~I~vwd~~~~--~~~~~~~~~-----h~~~V~~l~~s---p~----~~~l~s~s-~dg~v~iwd~~~~~~~~~~~~---- 157 (612)
+|.+||+.++ +.++++.-. ..+.+..+.+. |. +.+++.+. ..+-|.++|+.+++.-+....
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 5889999999 887665321 23468888887 22 33444443 467899999998876554421
Q ss_pred C--------------CCCeeEEEECCC----CCEEEEeC-CeEEEEEcCC-----C---eeEEEEecCC---CCEEEEEE
Q 007234 158 S--------------TKGISCMAVSSD----GKMLATAA-GQLKTFNCSD-----H---KKMQKFSGHP---GAVRFMTF 207 (612)
Q Consensus 158 ~--------------~~~v~~l~~spd----g~~l~~~~-g~i~lwd~~~-----~---~~~~~~~~h~---~~v~~l~~ 207 (612)
. ...+..|+++|+ ++.|.-.. ..-++|.+.+ . ..++.+ |.. ..-..+++
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~-G~kg~~s~~~~~~~ 282 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELL-GNRGKYNDAIALAY 282 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEE-EECCTTCCEEEEEE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEe-eecCCCCCcceEEE
Confidence 0 246889999998 78887665 4444444421 1 222222 222 23345566
Q ss_pred e-eCCcEEEEEEcCCCeEEEEEcCC
Q 007234 208 S-DNGKYVLSSAVGERYIALWRTDG 231 (612)
Q Consensus 208 s-p~~~~l~s~s~~d~~i~vwd~~~ 231 (612)
. .+|..+++- .....|..|+..+
T Consensus 283 D~~~G~ly~~~-~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 283 DPKTKVIFFAE-ANTKQVSCWNTQK 306 (381)
T ss_dssp CTTTCEEEEEE-SSSSEEEEEETTS
T ss_pred eCCCCeEEEEe-ccCCeEEEEeCCC
Confidence 5 567655544 4788999999876
No 358
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=56.26 E-value=1.4e+02 Score=28.61 Aligned_cols=189 Identities=14% Similarity=0.146 Sum_probs=102.0
Q ss_pred CcEEEEEECCCcEEEE---EcCC------CeEEEEecc-CCCCCeEEEEEec---CCCEEEEEecCCcEEEEECCCCc--
Q 007234 86 SSLLVLGTGGGDVLAL---AVSA------GQLKWRLSD-CHPGGVSAISFAT---HGSCIYSAGADGMVCEIDPLTGS-- 150 (612)
Q Consensus 86 ~~~l~~gs~~g~I~vw---d~~~------~~~~~~~~~-~h~~~V~~l~~sp---~~~~l~s~s~dg~v~iwd~~~~~-- 150 (612)
...++.-+..|.++-. ++.. |..+..+.. .....|.++..-+ +...++.++.+|.|+...+...+
T Consensus 53 ~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~ 132 (327)
T 3uc1_A 53 HDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSN 132 (327)
T ss_dssp TSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCC
T ss_pred CCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhcc
Confidence 5668888888885544 4432 232222221 1234566654433 47789999999999998765422
Q ss_pred -----eeEEEecCCCCeeEE-EECCCCCEEEEeC-CeEEEEEcC--C---------CeeEEEEecCCCCEEEEEEeeCCc
Q 007234 151 -----LLGKFRASTKGISCM-AVSSDGKMLATAA-GQLKTFNCS--D---------HKKMQKFSGHPGAVRFMTFSDNGK 212 (612)
Q Consensus 151 -----~~~~~~~~~~~v~~l-~~spdg~~l~~~~-g~i~lwd~~--~---------~~~~~~~~~h~~~v~~l~~sp~~~ 212 (612)
....++.. ..+..+ ..+.+..+++... |.+..+... . |...-.+. ....|.++...+++.
T Consensus 133 ~r~G~~~i~lke~-D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~ 210 (327)
T 3uc1_A 133 RSGGIVAVNLRDN-DELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGT 210 (327)
T ss_dssp CSSCEESCBCCTT-CCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTC
T ss_pred ccCceEEEEECCC-CEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCC
Confidence 22223332 334444 3444445555555 887777665 2 11111222 234566666666666
Q ss_pred EEEEEEcCCCeEEEEEcCCCcccc----ceeeEeecC-CceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCC
Q 007234 213 YVLSSAVGERYIALWRTDGVKKQS----ASCVLAMEH-PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN 283 (612)
Q Consensus 213 ~l~s~s~~d~~i~vwd~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~ 283 (612)
+++..+ ..|.++.-.+..-.... ......+.. ....+..... .+...++..+.+|.+.-++...
T Consensus 211 ~ll~~T-~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~------~~~~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 211 YLLVAT-SGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIV------DDDSELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp EEEEEE-TTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEE------CTTCEEEEEEGGGCEEEEEGGG
T ss_pred EEEEEe-CCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEe------CCCccEEEEcCCCeEEEEehhh
Confidence 777776 68999888765332110 111112212 2334333322 3345677778888877776543
No 359
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=55.84 E-value=1.6e+02 Score=28.94 Aligned_cols=193 Identities=14% Similarity=0.152 Sum_probs=96.7
Q ss_pred CcEEEEEECCCcEEEEEcCCC-----------eEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCC-----
Q 007234 86 SSLLVLGTGGGDVLALAVSAG-----------QLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG----- 149 (612)
Q Consensus 86 ~~~l~~gs~~g~I~vwd~~~~-----------~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~----- 149 (612)
....++-+.+|.|+.|-.... .....+..-....+..++++....+.+.-..||.|+.|-....
T Consensus 62 ~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~ 141 (389)
T 3kci_A 62 EQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGH 141 (389)
T ss_dssp TTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCS
T ss_pred CCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCC
Confidence 455667788999999964321 0111121112234555666666667677778999999954321
Q ss_pred ------ceeEEEecCC-CCeeEEEECCCCCEEEEeCCeEEEEEcCC-C---------ee-EEEEec-CCCCEEEEEEeeC
Q 007234 150 ------SLLGKFRAST-KGISCMAVSSDGKMLATAAGQLKTFNCSD-H---------KK-MQKFSG-HPGAVRFMTFSDN 210 (612)
Q Consensus 150 ------~~~~~~~~~~-~~v~~l~~spdg~~l~~~~g~i~lwd~~~-~---------~~-~~~~~~-h~~~v~~l~~sp~ 210 (612)
.....+.... ..|..++.......+++..|.|+.|-... + .. ...+.. ....|..++....
T Consensus 142 g~~~~~~~p~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g 221 (389)
T 3kci_A 142 GNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSG 221 (389)
T ss_dssp SSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCS
T ss_pred CCCccCcCCeEecccCCCeEEEEEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCC
Confidence 1111122212 25666666544333334348888886432 1 11 111111 2235666665432
Q ss_pred CcEEEEEEcCCCeEEEEEcCCCccc------c-ceeeEeec-CCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECC
Q 007234 211 GKYVLSSAVGERYIALWRTDGVKKQ------S-ASCVLAME-HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (612)
Q Consensus 211 ~~~l~s~s~~d~~i~vwd~~~~~~~------~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~ 282 (612)
..+.+... .|+.|..|-....... . ..+..... ....+..+.+ ...+.++.+.||.|+.|-..
T Consensus 222 ~~~t~~l~-~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~--------G~~hs~alt~~G~v~~wG~n 292 (389)
T 3kci_A 222 DAQTLCLT-DDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVEC--------GSQFSVALTKSGAVYTWGKG 292 (389)
T ss_dssp SCEEEEEE-TTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEE--------ETTEEEEEETTSCEEEEECC
T ss_pred CcEEEEEc-cCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeC--------CCCEEEEEeCCCeEEEEeCC
Confidence 24444444 6899999975432111 0 00111000 1112222222 23566677899999999865
Q ss_pred Cccee
Q 007234 283 NIEEL 287 (612)
Q Consensus 283 ~~~~~ 287 (612)
..-++
T Consensus 293 ~~GqL 297 (389)
T 3kci_A 293 DYHRL 297 (389)
T ss_dssp GGGTT
T ss_pred CCCCC
Confidence 44333
No 360
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=54.46 E-value=12 Score=43.47 Aligned_cols=36 Identities=19% Similarity=0.231 Sum_probs=31.9
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEee
Q 007234 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFA 44 (612)
Q Consensus 9 l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~ 44 (612)
++++..++..++.+-+.|+++||||+.+++++.+..
T Consensus 241 vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 241 ISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp SCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred EEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 455788888999999999999999999999998764
No 361
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=54.11 E-value=49 Score=34.67 Aligned_cols=58 Identities=12% Similarity=0.134 Sum_probs=44.0
Q ss_pred CeeEEEECCCCCEEEEeC--------------CeEEEEEcCCCeeEEEEecC-CCCEEEEEEeeCCcEEEEEE
Q 007234 161 GISCMAVSSDGKMLATAA--------------GQLKTFNCSDHKKMQKFSGH-PGAVRFMTFSDNGKYVLSSA 218 (612)
Q Consensus 161 ~v~~l~~spdg~~l~~~~--------------g~i~lwd~~~~~~~~~~~~h-~~~v~~l~~sp~~~~l~s~s 218 (612)
....|.|+++|.+.++.+ +.++.++..+++..+-+.+. ...++.++|+||++.|+++-
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 466899999999888543 16777788788766655543 35689999999999887764
No 362
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=53.62 E-value=39 Score=35.75 Aligned_cols=57 Identities=19% Similarity=0.237 Sum_probs=34.4
Q ss_pred eEEEEEecCCCEEEEEecC------------CcEEEEECCCCceeEEEecCC-CCeeEEEECCCCCEEEE
Q 007234 120 VSAISFATHGSCIYSAGAD------------GMVCEIDPLTGSLLGKFRAST-KGISCMAVSSDGKMLAT 176 (612)
Q Consensus 120 V~~l~~sp~~~~l~s~s~d------------g~v~iwd~~~~~~~~~~~~~~-~~v~~l~~spdg~~l~~ 176 (612)
.-.|.|+|.|.+++.-..+ ..+.+.+..+++..+-+.++. ..++.++|+||++.|++
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfv 547 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFV 547 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEE
Confidence 4678999999855554322 124444555666555555443 36777777777766654
No 363
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=53.19 E-value=56 Score=34.25 Aligned_cols=61 Identities=16% Similarity=0.211 Sum_probs=44.1
Q ss_pred CCeEEEEEecCCCEEEEEec------------CCcEEEEECCCCceeEEEecCC-CCeeEEEECCCCCEEEEeC
Q 007234 118 GGVSAISFATHGSCIYSAGA------------DGMVCEIDPLTGSLLGKFRAST-KGISCMAVSSDGKMLATAA 178 (612)
Q Consensus 118 ~~V~~l~~sp~~~~l~s~s~------------dg~v~iwd~~~~~~~~~~~~~~-~~v~~l~~spdg~~l~~~~ 178 (612)
.....|.|.++|.+.++... .+.|..++..+++....+.... ..++.++|+||++.|+++-
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 34678999999987664321 1257777887888766665433 4789999999999988653
No 364
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=51.59 E-value=1.7e+02 Score=28.07 Aligned_cols=142 Identities=15% Similarity=0.142 Sum_probs=79.2
Q ss_pred CcEEEEEECCCcEEEEEcCCC-------eEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECC--C----C---
Q 007234 86 SSLLVLGTGGGDVLALAVSAG-------QLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL--T----G--- 149 (612)
Q Consensus 86 ~~~l~~gs~~g~I~vwd~~~~-------~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~--~----~--- 149 (612)
...+++.+.+|.|+--.+..- .....+ . -.+.+..+........++..+..|.+..+... . +
T Consensus 109 e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~l-k-e~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a 186 (327)
T 3uc1_A 109 APYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNL-R-DNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRAT 186 (327)
T ss_dssp SSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBC-C-TTCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTS
T ss_pred CCEEEEEcCCCEEEEeEHHHhhccccCceEEEEE-C-CCCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCC
Confidence 678999999999998876542 111122 2 23456666555556678888899998888766 2 1
Q ss_pred --ceeEEEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCC-------eeEE--EEecCCCCEEEEEEeeCCcEEEE
Q 007234 150 --SLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDH-------KKMQ--KFSGHPGAVRFMTFSDNGKYVLS 216 (612)
Q Consensus 150 --~~~~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~-------~~~~--~~~~h~~~v~~l~~sp~~~~l~s 216 (612)
.....+. ....|.++...+++..++..+ |.++.-.+..- +-+. .+....+.+-.+....+...++.
T Consensus 187 ~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l 265 (327)
T 3uc1_A 187 SGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYA 265 (327)
T ss_dssp BCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEE
T ss_pred CCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEE
Confidence 1111222 234566666655555555444 88877765321 1122 22221334555444444444554
Q ss_pred EEcCCCeEEEEEcCC
Q 007234 217 SAVGERYIALWRTDG 231 (612)
Q Consensus 217 ~s~~d~~i~vwd~~~ 231 (612)
.+ .+|.+..++...
T Consensus 266 ~T-~~G~~ir~~~~~ 279 (327)
T 3uc1_A 266 VT-SGGGVIRTAARQ 279 (327)
T ss_dssp EE-GGGCEEEEEGGG
T ss_pred Ec-CCCeEEEEehhh
Confidence 54 467776676644
No 365
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=45.98 E-value=2.5e+02 Score=28.41 Aligned_cols=26 Identities=15% Similarity=-0.021 Sum_probs=20.1
Q ss_pred EEEEcCCCC-EEEEEeCCCcEEEEECC
Q 007234 10 LTSFSPALD-YFAICSGDARIKIWDTL 35 (612)
Q Consensus 10 ~~~fspdg~-~las~s~dg~i~iwd~~ 35 (612)
.++|.|||+ .|..+...|.|++++..
T Consensus 18 ~~a~~pdG~~rl~V~er~G~i~~~~~~ 44 (463)
T 2wg3_C 18 GALHSGDGSQRLFILEKEGYVKILTPE 44 (463)
T ss_dssp EEECCSSSSCCEEEEETTTEEEEECTT
T ss_pred EEEECCCCCeEEEEEeCCceEEEEeCC
Confidence 569999996 45556778999999754
No 366
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=45.88 E-value=2e+02 Score=27.22 Aligned_cols=189 Identities=13% Similarity=0.137 Sum_probs=98.1
Q ss_pred CcEEEEEECCCcEEEEEc---CC------CeEEEEecc-CCCCCeEEEEEe---cCCCEEEEEecCCcEEEEECCC----
Q 007234 86 SSLLVLGTGGGDVLALAV---SA------GQLKWRLSD-CHPGGVSAISFA---THGSCIYSAGADGMVCEIDPLT---- 148 (612)
Q Consensus 86 ~~~l~~gs~~g~I~vwd~---~~------~~~~~~~~~-~h~~~V~~l~~s---p~~~~l~s~s~dg~v~iwd~~~---- 148 (612)
...++..+..|.++-+.. .. |..+..+.. .....|.++..- +++.+++.++.+|.++...+..
T Consensus 53 ~~~ll~fT~~G~~~~~~~~elp~~~~~a~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~ 132 (307)
T 1zi0_A 53 HDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRL 132 (307)
T ss_dssp TCEEEEEETTSEEEEEEGGGSCCCCSSSCCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTC
T ss_pred CCEEEEEECCCEEEEEEhhHCcCCCCCCCCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhcc
Confidence 567888999999665544 22 222211111 233456666442 3456789999999999987642
Q ss_pred ---CceeEEEecCCCCeeEEE-ECCCCCEEEEeC-CeEEEEEcCC---------CeeEEEEecCCCCEEEEEEeeCCcEE
Q 007234 149 ---GSLLGKFRASTKGISCMA-VSSDGKMLATAA-GQLKTFNCSD---------HKKMQKFSGHPGAVRFMTFSDNGKYV 214 (612)
Q Consensus 149 ---~~~~~~~~~~~~~v~~l~-~spdg~~l~~~~-g~i~lwd~~~---------~~~~~~~~~h~~~v~~l~~sp~~~~l 214 (612)
|.....+..+ +.+..+. ...+..+++..+ |.+..++... |...-.+. ....|.++...+++..+
T Consensus 133 ~r~G~~~i~l~~~-d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~l 210 (307)
T 1zi0_A 133 RTAGKVAIKLVDG-DELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPRGDGAI 210 (307)
T ss_dssp CTTCEESSCCCTT-CCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCCSSCEE
T ss_pred ccCCeEEEEECCC-CEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEecCCCEE
Confidence 2122223333 4444443 344455555555 8777776532 11111222 23456666554555566
Q ss_pred EEEEcCCCeEEEEEcCCCccc----cceeeEeec-CCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCC
Q 007234 215 LSSAVGERYIALWRTDGVKKQ----SASCVLAME-HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN 283 (612)
Q Consensus 215 ~s~s~~d~~i~vwd~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~ 283 (612)
+..+ ..|.++-.++..-... .......+. .....+..... .+...++..+.+|.+.-+....
T Consensus 211 l~~T-~~G~~Kr~~~~e~~~~~Rg~kG~~~~~~~~~~~~lv~~~~v------~~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 211 LTAT-QNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQV------DDCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp EEEE-TTSEEEEECGGGSCCCCTTSCCEESSCCCTTTCSEEEEEEE------CTTCEEEEEESSCCEEEEEGGG
T ss_pred EEEE-cCCceEEEEHHHhccCCCCCCCEEeeEecCCCCeEEEEEEe------CCCceEEEEcCCCcEEEEeccc
Confidence 7666 6899888877432111 001111121 22333333333 2334566677777766665543
No 367
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=42.90 E-value=71 Score=33.73 Aligned_cols=57 Identities=14% Similarity=0.171 Sum_probs=42.7
Q ss_pred CeeEEEECCCCCEEEEeCC--------------eEEEEEcCCCeeEEEEecCC-CCEEEEEEeeCCcEEEEE
Q 007234 161 GISCMAVSSDGKMLATAAG--------------QLKTFNCSDHKKMQKFSGHP-GAVRFMTFSDNGKYVLSS 217 (612)
Q Consensus 161 ~v~~l~~spdg~~l~~~~g--------------~i~lwd~~~~~~~~~~~~h~-~~v~~l~~sp~~~~l~s~ 217 (612)
..-.|+|+|.|+++++-++ .+.+.+..+++..+-+.++. ..++.++|+||++.|++.
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 3467899999998887652 35666777787766666554 578999999999887765
No 368
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=42.78 E-value=25 Score=38.01 Aligned_cols=31 Identities=16% Similarity=0.358 Sum_probs=27.4
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCcEEEEee
Q 007234 14 SPALDYFAICSGDARIKIWDTLKGQVQTEFA 44 (612)
Q Consensus 14 spdg~~las~s~dg~i~iwd~~~~~~~~~~~ 44 (612)
..+..++++-+.|+++|+||+.+++++.+..
T Consensus 228 ~~~~~fLftL~~Dh~LRiWsL~t~~lv~t~D 258 (729)
T 3f7f_A 228 LFHERYLIVLTQNCHLKIWDLTSFTLIQDYD 258 (729)
T ss_dssp EETTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred ccCCcEEEEEEcCCeEEEEEcCCCceEEeec
Confidence 4457799999999999999999999998775
No 369
>1k8k_G P16, ARP2/3 complex 16 kDa subunit, P16-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: a.118.13.1 PDB: 1tyq_G* 1u2v_G* 2p9i_G* 2p9k_G* 2p9l_G 2p9n_G* 2p9p_G* 2p9s_G* 2p9u_G* 3rse_G 3dxm_G* 3dxk_G
Probab=40.46 E-value=37 Score=28.43 Aligned_cols=38 Identities=13% Similarity=0.176 Sum_probs=33.8
Q ss_pred cccccCChhHHHHhhhccChhhHHHHHHHHHHHHhcCC
Q 007234 484 DFETNIPVKKMRATILSLSPTNACKLLEVLVDLWQSRS 521 (612)
Q Consensus 484 ~~~~~~~~~~I~~ti~~Lp~~~~~~lL~~l~~~l~~~~ 521 (612)
++|..+..++|+..|.+|.....-.|+++|-.-+....
T Consensus 81 ~VL~siK~sdI~~~v~~L~~e~~D~LMKYiYkGm~~~~ 118 (151)
T 1k8k_G 81 KVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFESPS 118 (151)
T ss_dssp HHHHHSCGGGHHHHHHTSCHHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHccHHHHHHHHHHhChhhhhHHHHHHHHhhcCcC
Confidence 78888899999999999999999999999998886543
No 370
>3dwl_G Actin-related protein 2/3 complex subunit 5; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=40.29 E-value=35 Score=28.63 Aligned_cols=54 Identities=15% Similarity=0.215 Sum_probs=41.0
Q ss_pred cccccCChhHHHHhhhccChhhHHHHHHHHHHHHhcCC-CCccchHHHHHHHHHH
Q 007234 484 DFETNIPVKKMRATILSLSPTNACKLLEVLVDLWQSRS-YKGKNILQWIYFILVN 537 (612)
Q Consensus 484 ~~~~~~~~~~I~~ti~~Lp~~~~~~lL~~l~~~l~~~~-~~~~~~~~W~~~ll~~ 537 (612)
++|..+..++|+..|.+|.....-.|+++|-.-+.... .....++.|=.-++..
T Consensus 82 ~vL~siK~sdI~~~v~~L~~~~~D~LMKYiYkGm~~~~~~~~~~LL~WHEKl~e~ 136 (152)
T 3dwl_G 82 DVLSNIRAADIPAFVKECSTEEIDNIVNFIYRGLANPQAYNSSVLLNWHEKVVEI 136 (152)
T ss_dssp HHHHTSCGGGHHHHHHHSCHHHHHHHHHHHHHHTTC----CCSHHHHHHHHHHHT
T ss_pred HHHHHccHHHHHHHHHHhCHHHHHHHHHHHHHhccCccccccHHHHHHHHHHHHH
Confidence 78888899999999999999999999999998776441 2345666665555443
No 371
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=38.28 E-value=2.9e+02 Score=26.86 Aligned_cols=97 Identities=14% Similarity=0.028 Sum_probs=48.9
Q ss_pred CcEEEEEECCCcEEEEEcCC-CeEEEEe-ccCCCCCeEEEEEec-CCCEEEEEecCC----cEEEEECCCCceeEEEec-
Q 007234 86 SSLLVLGTGGGDVLALAVSA-GQLKWRL-SDCHPGGVSAISFAT-HGSCIYSAGADG----MVCEIDPLTGSLLGKFRA- 157 (612)
Q Consensus 86 ~~~l~~gs~~g~I~vwd~~~-~~~~~~~-~~~h~~~V~~l~~sp-~~~~l~s~s~dg----~v~iwd~~~~~~~~~~~~- 157 (612)
...|.+|+..| +.+++... +..-... .......|.+|++.| +...++.++..| .|...+ ..++.-..+..
T Consensus 22 ~g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~ 99 (394)
T 3b7f_A 22 PVMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRP 99 (394)
T ss_dssp CCEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBC
T ss_pred CCEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCcc
Confidence 44688888877 66665543 2211111 011245799999998 334455565555 454432 23332222211
Q ss_pred -------------CCCCeeEEEECC---CCCEEEEeC-CeEEEE
Q 007234 158 -------------STKGISCMAVSS---DGKMLATAA-GQLKTF 184 (612)
Q Consensus 158 -------------~~~~v~~l~~sp---dg~~l~~~~-g~i~lw 184 (612)
....|.++++.| .+.+.+.+. +.|+..
T Consensus 100 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S 143 (394)
T 3b7f_A 100 PAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRS 143 (394)
T ss_dssp CCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEE
T ss_pred ccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEE
Confidence 012477889986 344444333 555544
No 372
>3s6n_2 SurviVal of motor neuron protein-interacting PROT; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2leh_A
Probab=35.53 E-value=69 Score=30.08 Aligned_cols=46 Identities=17% Similarity=0.344 Sum_probs=35.0
Q ss_pred HhhhccChhhHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHhcccc
Q 007234 496 ATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNHGHHL 542 (612)
Q Consensus 496 ~ti~~Lp~~~~~~lL~~l~~~l~~~~~~~~~~~~W~~~ll~~H~~~l 542 (612)
..+.+|+...+..||++++..+... .....+.+||.+||..=...|
T Consensus 181 ~~l~~ld~~~v~~LL~~~~~wl~~~-~~~~~~~~WlyaLLa~Ld~pL 226 (280)
T 3s6n_2 181 SIVSRMNQATVTSVLEYLSNWFGER-DFTPELGRWLYALLACLEKPL 226 (280)
T ss_dssp HHHTTSCHHHHHHHHHHHHHGGGTS-CCCHHHHHHHHHHHHHCCSSC
T ss_pred HHHHhCCHHHHHHHHHHHHHHHhcc-CcchHHHHHHHHHHHHhCCCC
Confidence 4568889999999999999755443 346778899999998655444
No 373
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=32.19 E-value=3.3e+02 Score=25.74 Aligned_cols=190 Identities=16% Similarity=0.206 Sum_probs=102.4
Q ss_pred CcEEEEEECCCcEEEEEcCCCeE-------EEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECC---C------C
Q 007234 86 SSLLVLGTGGGDVLALAVSAGQL-------KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL---T------G 149 (612)
Q Consensus 86 ~~~l~~gs~~g~I~vwd~~~~~~-------~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~---~------~ 149 (612)
..++++.+.+|.|+--.+..-.. ...+.-.-...+..+........++..+..|.++.+... . |
T Consensus 8 e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~~G 87 (312)
T 1suu_A 8 ENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKG 87 (312)
T ss_dssp CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-------
T ss_pred CCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccCCC
Confidence 56789999999999887643221 111111123445555555556677888888987777542 1 1
Q ss_pred ce---eEEEecCCCCeeEEEECC---CCC-EEEEeC-CeEEEEEcCC-------CeeEEEEecCCCCEEEEEEeeCCcEE
Q 007234 150 SL---LGKFRASTKGISCMAVSS---DGK-MLATAA-GQLKTFNCSD-------HKKMQKFSGHPGAVRFMTFSDNGKYV 214 (612)
Q Consensus 150 ~~---~~~~~~~~~~v~~l~~sp---dg~-~l~~~~-g~i~lwd~~~-------~~~~~~~~~h~~~v~~l~~sp~~~~l 214 (612)
.+ .-.+.. ...|.++...+ ++. +++... |.++...+.. |.....+.. ...+..+....++..+
T Consensus 88 ~~i~~~l~l~~-~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~~~i 165 (312)
T 1suu_A 88 QNISELINLGD-QEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKDEKV 165 (312)
T ss_dssp CBGGGTSCCCT-TCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTTCEE
T ss_pred cChhhccCCCC-CCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCCCEE
Confidence 11 111222 22344443322 234 444444 8888777632 222223333 4455555555445556
Q ss_pred EEEEcCCCeEEEEEcCCCccc----cceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCc
Q 007234 215 LSSAVGERYIALWRTDGVKKQ----SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (612)
Q Consensus 215 ~s~s~~d~~i~vwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~ 284 (612)
+..+ .+|.+..+....-... .......+.....++.+... +++..+++.+..|..+...+...
T Consensus 166 ~l~T-~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v------~~~~~l~~vt~~G~~kr~~~~e~ 232 (312)
T 1suu_A 166 ICLS-KKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSV------KENPYLLIVSENGYGKRLNMSKI 232 (312)
T ss_dssp EEEE-TTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEEC------TTCSEEEEEETTSEEEEEEGGGS
T ss_pred EEEe-CCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEE------CCCCeEEEEECCCceEEEEHHHh
Confidence 6665 6898888887542111 11122233334444444433 34567888899999888876543
No 374
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=30.90 E-value=67 Score=34.65 Aligned_cols=36 Identities=14% Similarity=0.135 Sum_probs=29.6
Q ss_pred eEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEec
Q 007234 120 VSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA 157 (612)
Q Consensus 120 V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~ 157 (612)
|.++.+ +..++++-+.|+++|+|++.+++++.+..-
T Consensus 224 Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 224 ISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred EEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 554444 467999999999999999999999888665
No 375
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=29.33 E-value=5.6e+02 Score=27.53 Aligned_cols=188 Identities=9% Similarity=-0.048 Sum_probs=96.0
Q ss_pred cEEEEEECCCc----EEEEEcCCCeEEEEecc-CCCC------CeEEEEEecCCCEEEEEe-----------cCCcEEEE
Q 007234 87 SLLVLGTGGGD----VLALAVSAGQLKWRLSD-CHPG------GVSAISFATHGSCIYSAG-----------ADGMVCEI 144 (612)
Q Consensus 87 ~~l~~gs~~g~----I~vwd~~~~~~~~~~~~-~h~~------~V~~l~~sp~~~~l~s~s-----------~dg~v~iw 144 (612)
..++.-+.+|. ++++|+.+++.+..-+. .-.. ....++|..+ ..++.+. ....|+.|
T Consensus 143 ~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~-~~~~~~~~~~~~~~~~~~~~~~v~~~ 221 (711)
T 4hvt_A 143 RYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINK-DTIIFNLVLHKNEITSSLYPNSLYIW 221 (711)
T ss_dssp EEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEET-TEEEECCCCSTTCBCTTSSBCEEEEE
T ss_pred EEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECC-CEEEEEeCCCCCCcCcCCCCCEEEEE
Confidence 34444555555 89999999987632111 0000 1134477643 4444432 22468888
Q ss_pred ECCCCc--eeEEEecCCCC-eeEEEECCCCCE-----EEEe--C---CeEEEEEcCC--CeeEEEEecCCCCEEEEEEee
Q 007234 145 DPLTGS--LLGKFRASTKG-ISCMAVSSDGKM-----LATA--A---GQLKTFNCSD--HKKMQKFSGHPGAVRFMTFSD 209 (612)
Q Consensus 145 d~~~~~--~~~~~~~~~~~-v~~l~~spdg~~-----l~~~--~---g~i~lwd~~~--~~~~~~~~~h~~~v~~l~~sp 209 (612)
.+-+.. -...+.+.... ..+...++++++ +++. + ..+++.|... ++ +..+.-.... .+..+.
T Consensus 222 ~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~--~~~~~~ 298 (711)
T 4hvt_A 222 KRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLK-LQKINMPSDA--TLQGSF 298 (711)
T ss_dssp ETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCE-EEECCSCTTC--EEEEEE
T ss_pred ECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCc-ceEeecCCcc--eEeeeE
Confidence 875542 23344443333 334556777762 3332 2 4677777653 43 2333222221 233455
Q ss_pred CCcEEEEEE---------cCCCeEEEEEcCCCcc-----ccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCC-
Q 007234 210 NGKYVLSSA---------VGERYIALWRTDGVKK-----QSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG- 274 (612)
Q Consensus 210 ~~~~l~s~s---------~~d~~i~vwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg- 274 (612)
++.+++... ...+.|.+.++.+... .....++ .......+..+.+. . +.++++...+|
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~-----~-~~l~~~~~~~~~ 371 (711)
T 4hvt_A 299 KEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILF-TPTANEVFNFISTT-----K-DRVFLATYDNVV 371 (711)
T ss_dssp TTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEE-CCCTTEEEEEEEEC-----S-SCEEEEEEETTE
T ss_pred CCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEE-CCCCCCeEEEEEEE-----C-CEEEEEEEECCE
Confidence 666555331 1356688888876421 1111112 23345556566664 3 36777777777
Q ss_pred -cEEEEECCCcc
Q 007234 275 -VCYIWYGQNIE 285 (612)
Q Consensus 275 -~i~iwd~~~~~ 285 (612)
.|.++++.+++
T Consensus 372 ~~l~~~~~~~g~ 383 (711)
T 4hvt_A 372 AKVVTFTLENEQ 383 (711)
T ss_dssp EEEEEECEETTE
T ss_pred EEEEEEECCCCc
Confidence 46777766553
No 376
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=27.21 E-value=4.1e+02 Score=25.25 Aligned_cols=143 Identities=10% Similarity=0.035 Sum_probs=77.9
Q ss_pred CcEEEEEECCCcEEEEEc---C------CCeEEEEecc-CCCCCeEEEEEec---CCCEEEEEecCCcEEEEECCC----
Q 007234 86 SSLLVLGTGGGDVLALAV---S------AGQLKWRLSD-CHPGGVSAISFAT---HGSCIYSAGADGMVCEIDPLT---- 148 (612)
Q Consensus 86 ~~~l~~gs~~g~I~vwd~---~------~~~~~~~~~~-~h~~~V~~l~~sp---~~~~l~s~s~dg~v~iwd~~~---- 148 (612)
...++..+..|.++-+.. . .|..+..+.. .....|.++..-+ ++.+++.++.+|.++...+..
T Consensus 50 ~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~ 129 (323)
T 1wp5_A 50 KDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQ 129 (323)
T ss_dssp TSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCS
T ss_pred CCEEEEEECCCEEEEEEHHHCcCCCCCCCCcChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhc
Confidence 567888899998665554 2 2332212111 1234566553333 256789999999999987642
Q ss_pred ----CceeEEEecCCCCeeEEEE-CCCCCEEEEeC-CeEEEEEcCC---------CeeEEEEecCCCCEEEEEEeeCCc-
Q 007234 149 ----GSLLGKFRASTKGISCMAV-SSDGKMLATAA-GQLKTFNCSD---------HKKMQKFSGHPGAVRFMTFSDNGK- 212 (612)
Q Consensus 149 ----~~~~~~~~~~~~~v~~l~~-spdg~~l~~~~-g~i~lwd~~~---------~~~~~~~~~h~~~v~~l~~sp~~~- 212 (612)
|.....++.. +.+-.+.. .++..+++... |.+..++... |.....+. ....|.++...+++.
T Consensus 130 ~r~~G~~ai~l~e~-d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~-~~d~Vv~~~~~~~~~~ 207 (323)
T 1wp5_A 130 RYSKPLTGINLKND-DQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLK-EGDYIVSGQLITSKDE 207 (323)
T ss_dssp CCSSCEECSCCCTT-CCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEECCTTC
T ss_pred cccCceEEEEeCCC-CEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeC-CCCEEEEEEEEcCCCc
Confidence 2222223332 44444444 44444555555 8877776532 11111222 234466665444444
Q ss_pred EEEEEEcCCCeEEEEEcCC
Q 007234 213 YVLSSAVGERYIALWRTDG 231 (612)
Q Consensus 213 ~l~s~s~~d~~i~vwd~~~ 231 (612)
.++..+ ..|..+..++..
T Consensus 208 ~ll~vt-~~G~gKr~~~~e 225 (323)
T 1wp5_A 208 SIVVAT-QRGAVKKMKLTE 225 (323)
T ss_dssp EEEEEE-TTSEEEEEEGGG
T ss_pred EEEEEE-CCCceEEEEHHH
Confidence 566665 688888877654
No 377
>1b2p_A Protein (lectin); mannose-binding lectin, monocot, aglutinin, bluebell bulbs, carbohydrate interactions, sugar binding protein; 1.70A {Hyacinthoides hispanica} SCOP: b.78.1.1
Probab=24.95 E-value=2.5e+02 Score=22.06 Aligned_cols=43 Identities=7% Similarity=0.155 Sum_probs=21.8
Q ss_pred EEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEE
Q 007234 90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIY 133 (612)
Q Consensus 90 ~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~ 133 (612)
+.-..+|.+.++|- .+..++.-..........+.+.++|.+++
T Consensus 65 l~l~~dGNLVl~d~-~~~~lW~S~~~~~~g~~~l~l~~~Gnlvl 107 (119)
T 1b2p_A 65 AVLQPDGVLVVITN-ENVTVWQSPVAGKAGHYVLVLQPDRNVVI 107 (119)
T ss_dssp EEECTTSCEEEECT-TCCEEEECSCCCCSSCEEEEECTTSCEEE
T ss_pred EEEccCCEEEEEeC-CCcEEEcCCCCCCCCCEEEEEECCCcEEE
Confidence 34456677777763 34555554322222234555666665433
No 378
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=24.65 E-value=2.5e+02 Score=21.84 Aligned_cols=81 Identities=9% Similarity=0.072 Sum_probs=45.9
Q ss_pred CcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEE
Q 007234 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCM 165 (612)
Q Consensus 86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l 165 (612)
+.+.+.-..||.+.+|+...+..++.........-..+.+..+|++++.- .++.+ +|.-.+.. . .....+
T Consensus 24 g~~~L~~q~dGNLvL~~~~~~~~vWssnt~~~~~~~~l~l~~dGNLVl~d-~~~~~-iW~S~t~~-------~-~~~~~~ 93 (113)
T 3mez_B 24 RDYSLVMRDDCNLVLTKGSKTNIVWESGTSGRGQHCFMRLGHSGELDITD-DRLNT-VFVSNTVG-------Q-EGDYVL 93 (113)
T ss_dssp TTEEEEECTTSCEEEEETTTTEEEEECCCTTSCSSCEEEECTTSCEEEEC-TTSCE-EEECSCCC-------S-SSCCEE
T ss_pred CCEEEEEcCCCEEEEEECCCCEEEEECCcccCCcCEEEEEeCCCcEEEEC-CCCCE-EEECCCcC-------C-CCCEEE
Confidence 45566667888888888655666665432222223456777788766653 34444 67754321 0 112445
Q ss_pred EECCCCCEEEE
Q 007234 166 AVSSDGKMLAT 176 (612)
Q Consensus 166 ~~spdg~~l~~ 176 (612)
.+.+||.+++-
T Consensus 94 ~L~~dGnlvly 104 (113)
T 3mez_B 94 ILQINGQAVVY 104 (113)
T ss_dssp EECTTSCEEEE
T ss_pred EEcCCceEEEe
Confidence 56667766654
No 379
>2l9b_A MRNA 3'-END-processing protein RNA15; 3' END mRNA maturation, transcription; NMR {Saccharomyces cerevisiae}
Probab=23.59 E-value=40 Score=26.37 Aligned_cols=34 Identities=6% Similarity=0.049 Sum_probs=28.0
Q ss_pred Chh-HHHHhhhccChhhHHHHHHHHHHHHhcCCCC
Q 007234 490 PVK-KMRATILSLSPTNACKLLEVLVDLWQSRSYK 523 (612)
Q Consensus 490 ~~~-~I~~ti~~Lp~~~~~~lL~~l~~~l~~~~~~ 523 (612)
-++ .|..|+.+||+..+..||+.+-......|.+
T Consensus 37 ap~~~IS~~Laslpp~Ql~eiL~qmK~~~~~nP~~ 71 (109)
T 2l9b_A 37 TPAMMISSELAKKPKEVQLKFLQKFQEWTRAHPED 71 (109)
T ss_dssp CHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCHHH
T ss_pred chHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHH
Confidence 467 8999999999999999998888666666654
No 380
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=23.49 E-value=7.1e+02 Score=26.73 Aligned_cols=193 Identities=11% Similarity=0.125 Sum_probs=94.1
Q ss_pred EEcCCCCEEEEEeC----C-CcEEEEECCCCcEEEEeeccCCcccccccccccccccc-ccceeEEEeeecccccccccC
Q 007234 12 SFSPALDYFAICSG----D-ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHL-SVDYTCMKWLSVDRKKKRKLG 85 (612)
Q Consensus 12 ~fspdg~~las~s~----d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~-~~~~~~~~w~~~~~~~~~~~~ 85 (612)
+++||+++++.+-+ | ..++++|+.+++.+.. +.. +..+.|.+ ......+.|...
T Consensus 136 ~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~--~~~---------~~~k~~~~~~~~~~~~~W~d~--------- 195 (711)
T 4hvt_A 136 NCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKN--GFE---------PITNSGKLLEGKFTYPTWINK--------- 195 (711)
T ss_dssp ECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTT--CSC---------CBCTTCCBCCEETCCEEEEET---------
T ss_pred ecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCC--Ccc---------cccccccccccccceeeEECC---------
Confidence 49999998875422 2 3699999999987631 000 00000000 011234467532
Q ss_pred CcEEEEEE--------CC---CcEEEEEcCCCe----EEEEeccCCCCCeEEEEEecCCCE-----EEEEecC---CcEE
Q 007234 86 SSLLVLGT--------GG---GDVLALAVSAGQ----LKWRLSDCHPGGVSAISFATHGSC-----IYSAGAD---GMVC 142 (612)
Q Consensus 86 ~~~l~~gs--------~~---g~I~vwd~~~~~----~~~~~~~~h~~~V~~l~~sp~~~~-----l~s~s~d---g~v~ 142 (612)
+-++.++ .. ..|+.|.+-+.. .+..- .....-.+...++++++ +++.+.+ ..+.
T Consensus 196 -~~~~~~~~~~~~~~~~~~~~~~v~~~~~Gt~~~~~~~v~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 272 (711)
T 4hvt_A 196 -DTIIFNLVLHKNEITSSLYPNSLYIWKRGESIEKAKKLFEV--PKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNY 272 (711)
T ss_dssp -TEEEECCCCSTTCBCTTSSBCEEEEEETTSCGGGCEEEEEC--CTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEE
T ss_pred -CEEEEEeCCCCCCcCcCCCCCEEEEEECCCChHHCeEEecc--CCCceEEEEEEecCCCceEEEEEEEEecccCceeEE
Confidence 2222221 11 238888776642 22222 11222234555666662 4544422 3466
Q ss_pred EEECCC--CceeEEEecCCCCeeEEEECCCCCEEEEe-----------C-CeEEEEEcCCCe-------eEEE-Ee-cCC
Q 007234 143 EIDPLT--GSLLGKFRASTKGISCMAVSSDGKMLATA-----------A-GQLKTFNCSDHK-------KMQK-FS-GHP 199 (612)
Q Consensus 143 iwd~~~--~~~~~~~~~~~~~v~~l~~spdg~~l~~~-----------~-g~i~lwd~~~~~-------~~~~-~~-~h~ 199 (612)
+.|... ++ ...+..... ..+..+.++.+++.. . +.|...|+.++. .... +. ...
T Consensus 273 ~~~~~~~~~~-~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (711)
T 4hvt_A 273 ILDTKYKNLK-LQKINMPSD--ATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTAN 349 (711)
T ss_dssp EEECSSSSCE-EEECCSCTT--CEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTT
T ss_pred EEcCCCCCCc-ceEeecCCc--ceEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCC
Confidence 667543 33 223322222 122334456555522 2 678888887631 2233 32 223
Q ss_pred CCEEEEEEeeCCcEEEEEEcCCC--eEEEEEcCCC
Q 007234 200 GAVRFMTFSDNGKYVLSSAVGER--YIALWRTDGV 232 (612)
Q Consensus 200 ~~v~~l~~sp~~~~l~s~s~~d~--~i~vwd~~~~ 232 (612)
..+..+.+..+ ..+++.. .++ .+.++++.++
T Consensus 350 ~~l~~~~~~~~-~l~~~~~-~~~~~~l~~~~~~~g 382 (711)
T 4hvt_A 350 EVFNFISTTKD-RVFLATY-DNVVAKVVTFTLENE 382 (711)
T ss_dssp EEEEEEEECSS-CEEEEEE-ETTEEEEEEECEETT
T ss_pred CeEEEEEEECC-EEEEEEE-ECCEEEEEEEECCCC
Confidence 45667787765 3444443 566 4667776555
No 381
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=22.05 E-value=5e+02 Score=24.43 Aligned_cols=143 Identities=13% Similarity=0.130 Sum_probs=80.0
Q ss_pred CcEEEEEECCCcEEEEEcC---CC------eEEEEec-cCCCCCeEEEEEec---CCCEEEEEecCCcEEEEECCC----
Q 007234 86 SSLLVLGTGGGDVLALAVS---AG------QLKWRLS-DCHPGGVSAISFAT---HGSCIYSAGADGMVCEIDPLT---- 148 (612)
Q Consensus 86 ~~~l~~gs~~g~I~vwd~~---~~------~~~~~~~-~~h~~~V~~l~~sp---~~~~l~s~s~dg~v~iwd~~~---- 148 (612)
...+++.+..|.++-+... .. ..+.... -.....|.++...+ ++.+++.++.+|.++...+..
T Consensus 58 ~~~ll~~T~~G~~~~~~~~~ip~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~ 137 (312)
T 1suu_A 58 HDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAV 137 (312)
T ss_dssp TCEEEEEETTSEEEEEEGGGSCC-------CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC-
T ss_pred CCEEEEEECCCeEEEEEHHHCCCCCccCCCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhcc
Confidence 5678888999997766553 11 1100010 11234455554433 466788889999999987643
Q ss_pred ---CceeEEEecCCCCeeEEEE-CCCCCEEEEeC-CeEEEEEcCC---------CeeEEEEecCCCCEEEEEEeeCCcEE
Q 007234 149 ---GSLLGKFRASTKGISCMAV-SSDGKMLATAA-GQLKTFNCSD---------HKKMQKFSGHPGAVRFMTFSDNGKYV 214 (612)
Q Consensus 149 ---~~~~~~~~~~~~~v~~l~~-spdg~~l~~~~-g~i~lwd~~~---------~~~~~~~~~h~~~v~~l~~sp~~~~l 214 (612)
|.....+.. .+.+..+.. .++..+++... |.+..+.... |...-.+.. ...|.++...+++..+
T Consensus 138 r~~G~~~i~L~~-~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~-~d~vv~~~~v~~~~~l 215 (312)
T 1suu_A 138 KSRGVIVIKLND-KDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKE-GDLFVKVLSVKENPYL 215 (312)
T ss_dssp ---CEECBCCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCT-TCCEEEEEECTTCSEE
T ss_pred CCCcEEEEecCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCC-CCEEEEEEEECCCCeE
Confidence 222223333 334444444 44444555555 8888887642 122222332 3456666555555666
Q ss_pred EEEEcCCCeEEEEEcCC
Q 007234 215 LSSAVGERYIALWRTDG 231 (612)
Q Consensus 215 ~s~s~~d~~i~vwd~~~ 231 (612)
++.+ ..|..+...+..
T Consensus 216 ~~vt-~~G~~kr~~~~e 231 (312)
T 1suu_A 216 LIVS-ENGYGKRLNMSK 231 (312)
T ss_dssp EEEE-TTSEEEEEEGGG
T ss_pred EEEE-CCCceEEEEHHH
Confidence 6666 689888888754
No 382
>3a0c_A Mannose/sialic acid-binding lectin; beta-prism II, sugar binding protein; 2.00A {Polygonatum cyrtonema} PDB: 3a0d_A* 3a0e_A*
Probab=21.67 E-value=2.8e+02 Score=21.37 Aligned_cols=41 Identities=5% Similarity=0.174 Sum_probs=20.3
Q ss_pred EECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEE
Q 007234 92 GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIY 133 (612)
Q Consensus 92 gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~ 133 (612)
-..+|.+.++|- .+..+++-.......-..+.+.++|.+++
T Consensus 57 l~~dGNLVl~~~-~~~~~W~S~t~~~~g~~~l~l~~dGnlvl 97 (110)
T 3a0c_A 57 LHNNGNLVIYDQ-SNRVIWQTKTNGKEDHYVLVLQQDRNVVI 97 (110)
T ss_dssp ECTTSCEEEECT-TCCEEEECCCCCSSSCCEEEECTTSCEEE
T ss_pred EeCCCCEEEECC-CCcEEEecCCCCCCCCEEEEEeCCccEEE
Confidence 345666666664 34445443322222334556666666444
No 383
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=21.11 E-value=1.9e+02 Score=29.66 Aligned_cols=58 Identities=22% Similarity=0.353 Sum_probs=37.8
Q ss_pred CcEEEEEECCCcEE-EEEcCCCe-------EEEEecc-CCCCCeEEEEEecCCCEEEEEecCCcEEE
Q 007234 86 SSLLVLGTGGGDVL-ALAVSAGQ-------LKWRLSD-CHPGGVSAISFATHGSCIYSAGADGMVCE 143 (612)
Q Consensus 86 ~~~l~~gs~~g~I~-vwd~~~~~-------~~~~~~~-~h~~~V~~l~~sp~~~~l~s~s~dg~v~i 143 (612)
-..+.+|+.+|.|+ +.....+. .+..+.- ....+|..+.+++++.+|+.++.++.+++
T Consensus 421 ~tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V~~v 487 (495)
T 1q47_A 421 YDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQL 487 (495)
T ss_dssp EEEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeEEEE
Confidence 46788999999964 43332221 1212221 24578999999999999999988775554
Done!