Query 007236
Match_columns 611
No_of_seqs 154 out of 704
Neff 5.8
Searched_HMMs 46136
Date Thu Mar 28 20:49:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007236.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007236hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11504 tynA tyramine oxidase 100.0 8E-167 2E-171 1388.8 66.4 564 25-611 11-579 (647)
2 PLN02566 amine oxidase (copper 100.0 1E-165 2E-170 1379.5 66.6 572 25-611 19-595 (646)
3 PRK14696 tynA tyramine oxidase 100.0 7E-163 1E-167 1368.1 66.0 573 21-611 81-664 (721)
4 COG3733 TynA Cu2+-containing a 100.0 7E-159 2E-163 1258.6 54.7 563 25-610 27-596 (654)
5 KOG1186 Copper amine oxidase [ 100.0 2E-139 5E-144 1141.2 50.5 577 21-611 21-600 (670)
6 PF01179 Cu_amine_oxid: Copper 100.0 2E-118 4E-123 964.4 31.9 353 246-611 1-356 (413)
7 PF02728 Cu_amine_oxidN3: Copp 99.9 2.3E-22 4.9E-27 178.6 9.5 99 122-224 1-101 (101)
8 PF02727 Cu_amine_oxidN2: Copp 99.8 9.7E-20 2.1E-24 157.3 3.9 85 28-115 1-85 (86)
9 PF09248 DUF1965: Domain of un 60.4 7.1 0.00015 33.2 2.3 29 191-220 2-35 (74)
10 PF04270 Strep_his_triad: Stre 44.1 13 0.00027 29.8 1.2 19 29-47 34-52 (53)
11 PF02728 Cu_amine_oxidN3: Copp 35.5 9.4 0.0002 33.8 -0.8 80 32-115 2-93 (101)
12 PF04667 Endosulfine: cAMP-reg 22.7 16 0.00036 31.9 -1.5 15 322-336 35-49 (86)
No 1
>PRK11504 tynA tyramine oxidase; Provisional
Probab=100.00 E-value=8.2e-167 Score=1388.82 Aligned_cols=564 Identities=32% Similarity=0.559 Sum_probs=528.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEccCCCHHHHHhhhhcCCCCCCCcEEEEEEEe--CCeeEEEE
Q 007236 25 HQYHPLDSLTPSEFSQIRSIVTKAYPESSTHKLTFQYVGLEEPSKQTVISWLKNETTTNPPRQAFVIARI--DHQTHELI 102 (611)
Q Consensus 25 ~~~HPldpLs~~Ei~~a~~il~~~~~~~~~~~~~f~~I~L~eP~K~~vl~~l~~~~~~~p~R~A~vv~~~--~~~~~E~v 102 (611)
...|||||||++||++|++|||++.+. .++++|.+|+|.||+|++|++|+.++ +++|+|+|++++ .+.++|++
T Consensus 11 ~~~HPLdpLt~~Ei~~a~~iv~~~~~~--~~~~~F~~i~L~EP~K~~v~~~~~g~---~~~R~a~v~~~~~~~~~~~e~v 85 (647)
T PRK11504 11 AVSHPLDPLTAAEIEAAVAILRAEGLL--GESTRFVSIELAEPPKAEVLAFDPGD---PIDRRAFVVLYDRATGKTYEAV 85 (647)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhcccc--CCceEEEEeeccCCCHHHHHhhhcCC---CCCcEEEEEEEECCCCcEEEEE
Confidence 456999999999999999999998763 15889999999999999999999975 247999999996 56799999
Q ss_pred EeCCCCeEEEEEeeCCCCCCCCCHHHHHHHHHHhhcCchHHHHHHHhCC-CCcceEEccccccccCCccccCCCCceEEE
Q 007236 103 VDLSLQEIASKRIYSGYGYPMFTFEDQENADKLAFTYPPFVASIRRRGL-KLEEVVCESFSVGWYGAEEEEGKNKKRIVK 181 (611)
Q Consensus 103 V~L~~~~v~~~~~~~~~~~p~~~~ee~~~~e~~~~~~p~~~~a~~~~g~-~~~~v~~~~~~~G~~~~~~~~~~~~~Rl~~ 181 (611)
|||++++|++++.+++ +||+++.||+.+||++|++||.|++||+|||| ++++|.||||++|||+.+++. ++|++|
T Consensus 86 VdL~~~~V~~~~~~~~-~~p~~~~~e~~~~e~~~~~dp~~~~ai~~rgl~~~~~V~~dpw~~G~~~~~~~~---~~Rl~~ 161 (647)
T PRK11504 86 VSLTAGEVVSWEEIPG-VQPPILLEEFEECEEVVRADPRWQAALAKRGITDFDLVMVDPWSAGYFGEPEER---GRRLAR 161 (647)
T ss_pred EECCCCEEEEEEECCC-ccCCcCHHHHHHHHHHHhcCHHHHHHHHHcCCCCcceEEEcCccccccCCCCcC---CceEEE
Confidence 9999999999999874 69999999999999999999999999999999 578999999999998865433 689999
Q ss_pred EEEEEe-cCCCCCccCCcCCcEEEEecCccEEEEEECCceeecCCCCCCCCccccCCCCCCCCCCCceeeCCCCCeeEEe
Q 007236 182 VMCYYM-NGTVNLFMRPIEGISMTVDLDEMKIIGFQDRVTVPVPKADETEFRESKIKPPFRQSLKAITVVQPDGPSFTID 260 (611)
Q Consensus 182 ~~~f~~-~~~~n~Ya~Pl~gl~~~vD~~~~kvv~i~d~~~~~~p~~~~~~y~~~~~~~~~r~~lkp~~i~QPeG~sf~v~ 260 (611)
++||+| ++++|+||||||||+++||++++||++|+|.+..|+|+.. .+|.++.+. +.|+++|||+|+||||+||+|+
T Consensus 162 ~~~~~r~~~~~n~Ya~Pi~G~~~vvDl~~~~vv~i~d~g~~p~p~~~-~~Y~~~~~~-~~r~dlkPl~i~QPeG~sF~v~ 239 (647)
T PRK11504 162 GLAFVRADPGDNGYARPIEGLVAVVDLNTMEVLRVEDHGVVPIPAED-GNYDPEFIP-PLRTDLKPLEITQPEGPSFTVD 239 (647)
T ss_pred EEEEEecCCCccccccccCceEEEEECCCCEEEEEecCCCCCCCCCC-CCCChhHcc-ccccCCCCcceeCCCCCcEEEc
Confidence 999999 5789999999999999999999999999998877777765 599988774 6899999999999999999999
Q ss_pred ceEEeeeeeEEEEeecCCCceeEEeeEEeccCCCceeEEEEEeeeeeEeeeCCCCCccccccceeecCCCCCCccccCCC
Q 007236 261 GHMIRWADWEFHLSFDVRAGMIISLASIYDLEKQQSRRVLYKGHVSEMFVPYMDLTEEWQRRTFFDAGEYGYGLCSMTLE 340 (611)
Q Consensus 261 g~~V~w~~W~f~~gf~~reGlvL~~v~~~D~~~~~~r~v~Yrlsl~Em~vpYgdp~~~~~~k~~~D~geyG~G~~a~~L~ 340 (611)
|++|+||||+||+|||+|||||||||+|+| .+++|||+||+|||||+||||||+++|++|+|||+||||+|.+||+|+
T Consensus 240 g~~V~W~~W~f~vgf~~reGlvL~dv~y~d--~g~~R~v~YrlslsEm~VPYgdp~p~~~~k~~fD~GeyG~G~~an~L~ 317 (647)
T PRK11504 240 GNEVEWQKWSFRVGFNPREGLVLHQVSYDD--GGRERPILYRASLSEMVVPYGDPSPTHYWKNAFDAGEYGLGRLANSLE 317 (647)
T ss_pred CCEEEECCcEEEEecCCCCceEEEEEEEcC--CCCcceEEEEeeeeeeeeecCCCCcchhhceeeeccccCCcccccccc
Confidence 999999999999999999999999999998 678899999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcEEeeeEEecCCCCeeeeCceEEEeEEeCCCceeecccCCCCCcEEEeeeeceeEEEEEeeeecccceeEEE
Q 007236 341 PLRDCPPNAVFMDAYFSKQDGMPRKIPKAFCIFERYAGDIMWRHTEATIPGKTVREVRQDVSLVVRTVSTFGNYDYVNDW 420 (611)
Q Consensus 341 ~G~DCpg~a~YlD~~~~~~~g~p~~~~naiCi~E~d~~g~l~rH~~~~~~~~~~~~~r~~~~LVvr~i~TVgNYDYi~~w 420 (611)
+||||||+|+|||+++.+++|+|++++|||||||+| +|+||||++++++..+++| +++||||+|+|||||||||+|
T Consensus 318 lGcDCpg~i~Y~D~~~~~~~G~p~~~~naICihE~D-~GilwkHt~~r~~~~~v~r---~r~LVvr~I~TVgNYdYi~~w 393 (647)
T PRK11504 318 LGCDCLGEIRYFDAVLADSDGEPYTIKNAICMHEED-YGILWKHTDFRTGSAEVRR---SRRLVISFFATVGNYDYGFYW 393 (647)
T ss_pred cCCCCCCCCEEcceEEecCCCCeEEecCEEEEeeec-CCeeeeeeccCCCcEEEEe---ccEEEEEEEEecccccEEEEE
Confidence 999999999999999999999999999999999999 7899999999987655554 459999999999999999999
Q ss_pred EEeeCccEEEEEeEeEeEEeeeeeeccCCCCccccccceeccCccccccceeEEeeeecCCCCCCCceEEEeEEEeecCC
Q 007236 421 EFKQSGSIKVTVGLTGMVQVRGTTYTHKDHMEEDVYGTLVAENSIAIHHDHFLTYRLDLDVDGDANSFVRSKLRTTRVND 500 (611)
Q Consensus 421 ~F~~dGtIe~~v~aTG~l~~~~~~~~~~~~~~~~~yGt~V~~~~~g~~HqH~f~~RlD~dIdG~~Nsv~~~d~~~~~~~~ 500 (611)
+|||||+||+||+|||||++++.. +.++.+||++|+|+++|++|||+|||||||||||.+|||+++|++++|..
T Consensus 394 ~F~qdG~Ie~eV~aTGil~t~~~~-----~~~~~~yGt~V~~~v~a~~HqH~f~~RlD~dIDG~~Nsv~~~d~~~~p~~- 467 (647)
T PRK11504 394 YFYQDGTIEFEVKLTGIVFTAAVP-----PGETPPYGTLVAPGLYAPNHQHFFNARLDMDVDGPGNSVYEVNSVPVPMG- 467 (647)
T ss_pred EEecCceEEEEEEeeeEEEeeeeC-----CCccCCCcceecCCcccccceEEEEEEEcccccCCCceEEEEEeEecCCC-
Confidence 999999999999999999997652 22346899999999999999999999999999999999999999999886
Q ss_pred CCCCCceeeEEEEEeecchhhHHhhcCC-CCcEEEEecCCCCCCCCCcceEEEecCCccccCCCCCChhhhcccccccce
Q 007236 501 RRSSRKSYWTVDSKTAKTESDARIKLGS-EPAELLFVNPNKKTKMGNLIGYRLIPEGVTGALLSSDDHPQIRAAFTNYNV 579 (611)
Q Consensus 501 ~~~p~~~~~~~~~~~~~tE~~a~~~~~~-~~r~~~i~N~~~~N~~G~p~gYrl~p~~~~~~~~~~~s~~~~ra~fa~~~l 579 (611)
++||++++|+++++++++|++|++++++ ++|+|+|+|++++|++|+|+||||+|+++++++++++|+..+||+||+|||
T Consensus 468 ~~np~g~~~~~~~t~l~tE~~a~~~~~~~~~R~~~ivN~~~~N~~G~pvgYkl~p~~~~~~l~~~~s~~~~ra~fa~~~l 547 (647)
T PRK11504 468 PDNPHGNAFYTRETLLETESEAARDADPSTGRYWKIVNPNKKNRLGEPVAYKLVPGGNPPLLADPGSSIRQRAGFATHHL 547 (647)
T ss_pred CCCccceEEEEEEEEecchhhhhhccCCCCccEEEEECCCCcCCCCCeeeEEEccCCCccccCCCCchhhhcchhhhCcE
Confidence 6899999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCCCCCCCCCCCCCCCCCCCChhhhccC
Q 007236 580 WVTAYNKSEKWAGGLYADQSHGDDTLAVWSNR 611 (611)
Q Consensus 580 wVT~y~~~E~~asg~y~~qs~g~~gl~~w~~r 611 (611)
|||+|+|+|+||||+|+|||.|++||+.|+++
T Consensus 548 wVT~y~d~E~~aag~y~~Qs~~~~gl~~~~~~ 579 (647)
T PRK11504 548 WVTPYDPDERYAAGDYPNQSAGGDGLPAYIAA 579 (647)
T ss_pred EEeccCCCccccCCCCcccCCCCCCHHHHhcC
Confidence 99999999999999999999999999999964
No 2
>PLN02566 amine oxidase (copper-containing)
Probab=100.00 E-value=1.1e-165 Score=1379.47 Aligned_cols=572 Identities=56% Similarity=0.999 Sum_probs=527.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEccCCCHHHHHhhhhcCC--CCCCCcEEEEEEEeCCeeEEEE
Q 007236 25 HQYHPLDSLTPSEFSQIRSIVTKAYPESSTHKLTFQYVGLEEPSKQTVISWLKNET--TTNPPRQAFVIARIDHQTHELI 102 (611)
Q Consensus 25 ~~~HPldpLs~~Ei~~a~~il~~~~~~~~~~~~~f~~I~L~eP~K~~vl~~l~~~~--~~~p~R~A~vv~~~~~~~~E~v 102 (611)
...|||||||++||++|++|||++.+. ..++++|.+|+|.||+|++|++||+++. .+.|+|+|+|++..+++++|++
T Consensus 19 ~~~HPLdpLs~~Ei~~a~~iv~~~~~~-~~~~~~F~~i~L~EP~K~~v~~~~~~~~~~~~~p~R~a~v~~~~~~~~~e~v 97 (646)
T PLN02566 19 SLYHPLDPLNPQEINKIRLIVQKSHLG-NLPNLTFHFLDLEEPEKRDVLKWLSSNPSNKSPPPRRAKVVVRAGGETYELI 97 (646)
T ss_pred cCCCCCCCCCHHHHHHHHHHHHhhccC-CCCceEEEEEEccCCChHHHHhhhhcccCCCCCCCcEEEEEEecCCCEEEEE
Confidence 346999999999999999999998753 1136899999999999999999998752 2346899998775677899999
Q ss_pred EeCCCCeEEEEEeeCCCCCCCCCHHHHHHHHHHhhcCchHHHHHHHhCCCCcceEEccccccccCCccccCCCCceEEEE
Q 007236 103 VDLSLQEIASKRIYSGYGYPMFTFEDQENADKLAFTYPPFVASIRRRGLKLEEVVCESFSVGWYGAEEEEGKNKKRIVKV 182 (611)
Q Consensus 103 V~L~~~~v~~~~~~~~~~~p~~~~ee~~~~e~~~~~~p~~~~a~~~~g~~~~~v~~~~~~~G~~~~~~~~~~~~~Rl~~~ 182 (611)
|||++++|++++.+++.|+|+++.||+.+||++|++||+|++||+||||+.++|.||||++|||+.+ + ++|++|+
T Consensus 98 Vdl~~~~v~~~~~~~g~G~p~~~~~e~~~~e~~~~~dp~~~~a~~~rgl~~~~V~~dpw~~G~~~~~--~---~~R~~q~ 172 (646)
T PLN02566 98 VDLATGSITSSRVYTGHGYPPLTFIELFQASKLPLKYPKFKKSILRRGLNISEVSCIPFTVGWYGET--V---TKRALKI 172 (646)
T ss_pred EECCCCEEEEEEEcCCCCcCCcCHHHHHHHHHHHhcCHHHHHHHHHcCCCcceEEEeCcccccCCCC--C---CcEEEEE
Confidence 9999999999999988779999999999999999999999999999999888899999999998752 3 6899999
Q ss_pred EEEEecCCCCCccCCcCCcEEEEecCccEEEEEECCceeecCCCCCCCCccccCCCCCCCCCCCceeeCCC-CCeeEEec
Q 007236 183 MCYYMNGTVNLFMRPIEGISMTVDLDEMKIIGFQDRVTVPVPKADETEFRESKIKPPFRQSLKAITVVQPD-GPSFTIDG 261 (611)
Q Consensus 183 ~~f~~~~~~n~Ya~Pl~gl~~~vD~~~~kvv~i~d~~~~~~p~~~~~~y~~~~~~~~~r~~lkp~~i~QPe-G~sf~v~g 261 (611)
+||+|++++|+||||||||+++||++++||++|+|.+..|+|+..+. +.|+++||+.|+||| |+||+|+|
T Consensus 173 ~~y~r~~~~N~Ya~Pl~G~~~vvDl~~~~vi~i~d~~~~p~p~~~~~---------~~R~d~kPl~i~QPegG~sF~v~G 243 (646)
T PLN02566 173 SCFYRGGSVNVFARPIEGISILIDVDSMQIIKYSDRFRAPLPKAEGT---------DFRTKHKPFSFPCNVSDSGFTILG 243 (646)
T ss_pred EEEEcCCCcccccCccCCcEEEEECCCCEEEEEECCCCCccCCCCCC---------CCCcCCCCccccCCCCCCcEEEcC
Confidence 99999889999999999999999999999999998865566654331 369999999999999 59999999
Q ss_pred eEEeeeeeEEEEeecCCCceeEEeeEEeccCCCceeEEEEEeeeeeEeeeCCCCCccccccceeecCCCCCCccccCCCC
Q 007236 262 HMIRWADWEFHLSFDVRAGMIISLASIYDLEKQQSRRVLYKGHVSEMFVPYMDLTEEWQRRTFFDAGEYGYGLCSMTLEP 341 (611)
Q Consensus 262 ~~V~w~~W~f~~gf~~reGlvL~~v~~~D~~~~~~r~v~Yrlsl~Em~vpYgdp~~~~~~k~~~D~geyG~G~~a~~L~~ 341 (611)
++|+||||+||||||+|||||||||+|+|++++++|||+||+|||||+||||||+++|+||+|||+||||+|.+||+|++
T Consensus 244 ~~V~W~~W~f~vgf~~reGlvL~~v~~~D~~~~~~R~v~YrlSlsEm~VPYgDP~~~~~~k~~fD~GeyG~G~~a~~L~l 323 (646)
T PLN02566 244 HRVKWANWDFHVGFDARAGVTISTASVFDAKVKRFRRVLYRGHVSETFVPYMDPTSEWYFRTFMDIGEFGFGRSAVTLQP 323 (646)
T ss_pred CEEEecCcEEEEecCCCcceEEEeEEEeccCCCcceeEEEEeeeeeeEEecCCCCccccccceeeccccCcccccccccc
Confidence 99999999999999999999999999999998888999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcEEeeeEEecCCCCeeeeCceEEEeEEeCCCceeecccCCCCCcEEEeeeeceeEEEEEeeeecccceeEEEE
Q 007236 342 LRDCPPNAVFMDAYFSKQDGMPRKIPKAFCIFERYAGDIMWRHTEATIPGKTVREVRQDVSLVVRTVSTFGNYDYVNDWE 421 (611)
Q Consensus 342 G~DCpg~a~YlD~~~~~~~g~p~~~~naiCi~E~d~~g~l~rH~~~~~~~~~~~~~r~~~~LVvr~i~TVgNYDYi~~w~ 421 (611)
||||||+|+|||+++.+++|+|++++|||||||+|.|||||||++++..+..++.++.+++||||+|+|||||||||||+
T Consensus 324 GcDCpg~i~YlD~~~~~~~G~p~~~~NaICihE~D~GgilwkHt~~~~~~~~~r~g~~~~~LVvr~I~TVgNYDYif~w~ 403 (646)
T PLN02566 324 LIDCPANAVYLDGYVAGADGQAQKMTNVICIFERYSGDVAFRHTEINVPGRVIRSGEPEISLVVRMVATLGNYDYILDWE 403 (646)
T ss_pred CCCCCCCcEEeeeEEecCCCCEEEecCEEEEEeecCCccceeeccCCCCccccccCcceEEEEEEEEEEeecccEEEEEE
Confidence 99999999999999999999999999999999999889999999998766555667778899999999999999999999
Q ss_pred EeeCccEEEEEeEeEeEEeeeeeeccCCCCccccccceeccCccccccceeEEeeeecCCCCCCCceEEEeEEEeecCC-
Q 007236 422 FKQSGSIKVTVGLTGMVQVRGTTYTHKDHMEEDVYGTLVAENSIAIHHDHFLTYRLDLDVDGDANSFVRSKLRTTRVND- 500 (611)
Q Consensus 422 F~~dGtIe~~v~aTG~l~~~~~~~~~~~~~~~~~yGt~V~~~~~g~~HqH~f~~RlD~dIdG~~Nsv~~~d~~~~~~~~- 500 (611)
|||||+||+||+|||||+|+++.|......+..+|||+|+|+++|++|||+|||||||||||.+|||+++|+++++...
T Consensus 404 F~qdGtIe~eV~aTGil~t~~~~~~~~~~~~~~~yGt~V~~~v~a~~HqH~f~~RlD~dIdG~~Nsv~~~~~~~~~~~~~ 483 (646)
T PLN02566 404 FKKSGSIKVGVDLTGVLEMKATSYTNNDQITKDVYGTLVAENTIAVNHDHFLTYYLDLDVDGNGNSFVKAKLQTARVTAV 483 (646)
T ss_pred EecCceEEEEEEeEEEEEecccccccccccccCCCccEecCCcccccceEEEEEEEcccccCCCCeEEEEeeEEccCCCC
Confidence 9999999999999999999888654322122368999999999999999999999999999999999999999976553
Q ss_pred -CCCCCceeeEEEEEeecchhhHHhhcCCCCcEEEEecCCCCCCCCCcceEEEecCCccccCCCCCChhhhcccccccce
Q 007236 501 -RRSSRKSYWTVDSKTAKTESDARIKLGSEPAELLFVNPNKKTKMGNLIGYRLIPEGVTGALLSSDDHPQIRAAFTNYNV 579 (611)
Q Consensus 501 -~~~p~~~~~~~~~~~~~tE~~a~~~~~~~~r~~~i~N~~~~N~~G~p~gYrl~p~~~~~~~~~~~s~~~~ra~fa~~~l 579 (611)
++||++++|+++++++++|++|++++++..|.|+|+|++++|++|+|+||||+|++++.++++++|+..+||+||+|||
T Consensus 484 ~~~np~g~~~~~~~~~~~tE~~a~~~~~~~~~~~~i~N~~~~N~~G~pvgYkL~p~~~~~~l~~~~s~~~~Ra~fa~~~l 563 (646)
T PLN02566 484 NASSPRKSYWTVVKETAKTEAEGRIRLGSEPAELLIVNPNKKTKLGNQVGYRLITGQPVTSLLSDDDYPQIRAAYTKYQV 563 (646)
T ss_pred CCCCCCcceEEEEEEEecchhhhhhccCCCCceEEEECCCCcCCCCCeeeEEEccCCCccccCCCccchhhcchhhhCcE
Confidence 6999999999999999999999999999447799999999999999999999999999999999999999999999999
Q ss_pred EEeccCCCCCCCCCCCCCCCCCCCChhhhccC
Q 007236 580 WVTAYNKSEKWAGGLYADQSHGDDTLAVWSNR 611 (611)
Q Consensus 580 wVT~y~~~E~~asg~y~~qs~g~~gl~~w~~r 611 (611)
|||+|+|+|+||||.|++||+|++||+.|+++
T Consensus 564 wVT~y~d~E~~aag~y~~qs~g~~gl~~w~~~ 595 (646)
T PLN02566 564 WVTAYNKSERWAGGFYADRSRGDDGLAVWSSR 595 (646)
T ss_pred EEecCCCcccCCCCcCccCCCCCCChhhhhcC
Confidence 99999999999999999999999999999964
No 3
>PRK14696 tynA tyramine oxidase; Provisional
Probab=100.00 E-value=6.8e-163 Score=1368.14 Aligned_cols=573 Identities=32% Similarity=0.583 Sum_probs=520.1
Q ss_pred cCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEccCCCHHHHHhhhhcCCCCCCCcEEEEEEEeCCeeEE
Q 007236 21 FVPSHQYHPLDSLTPSEFSQIRSIVTKAYPESSTHKLTFQYVGLEEPSKQTVISWLKNETTTNPPRQAFVIARIDHQTHE 100 (611)
Q Consensus 21 ~~~~~~~HPldpLs~~Ei~~a~~il~~~~~~~~~~~~~f~~I~L~eP~K~~vl~~l~~~~~~~p~R~A~vv~~~~~~~~E 100 (611)
|....+.|||||||++||++|++||+++.+. ..+++|++|+|.||+|++|++||.++.+.+|+|+|+|+++.+++++|
T Consensus 81 ~~~~~~~HPLdpLt~~Ei~~a~~iv~~~~~~--~~~~~F~~i~L~EP~K~~v~~~~~~~~~~~~~R~A~v~~~~~~~~~e 158 (721)
T PRK14696 81 FQVEKRPHPLNALTADEIKQAVEIVKASADF--KPNTRFTEISLKEPDKEAVWAFALENKPVDQPRKADVIMLDGKHVIE 158 (721)
T ss_pred eeecCCCCCCCCCCHHHHHHHHHHHHhcccc--CCceEEEEEEecCCCcHHHHHHHhcCCCCCCCcEEEEEEEeCCCEEE
Confidence 3334557999999999999999999998752 14789999999999999999999853123378999999998788999
Q ss_pred EEEeCCCCeEEEEEeeCCCCCCCCCHHHHHHHHHHhhcCchHHHHHHHhCC-CCcceEEccccccccCCccccCCCCceE
Q 007236 101 LIVDLSLQEIASKRIYSGYGYPMFTFEDQENADKLAFTYPPFVASIRRRGL-KLEEVVCESFSVGWYGAEEEEGKNKKRI 179 (611)
Q Consensus 101 ~vV~L~~~~v~~~~~~~~~~~p~~~~ee~~~~e~~~~~~p~~~~a~~~~g~-~~~~v~~~~~~~G~~~~~~~~~~~~~Rl 179 (611)
++|||++++|++++.+++ +||+++.||+.+||++|++||+|+++|+|||| ++++|.|+||++|||+.+++. ..++|+
T Consensus 159 ~vVdL~~~~v~~~~~~~~-~~p~~~~~e~~~~e~~~~~dp~~~~ai~~rgl~~~~~V~~dpw~~G~~~~~~~~-~~~~Rl 236 (721)
T PRK14696 159 AVVDLQNNKVLSWQPIKD-AHGMVLLDDFASVQNIINNSEEFAAALKKRGITDVKKVITTPLTVGYFDGKDGL-KQDARL 236 (721)
T ss_pred EEEECCCCEEEEEEeCCC-ccCCCCHHHHHHHHHHHhhCHHHHHHHHHcCCCCCCEEEEeCccccccCCcCcc-ccCceE
Confidence 999999999999999874 59999999999999999999999999999999 789999999999998865421 126899
Q ss_pred EEEEEEEecCCCCCccCCcCCcEEEEecCccEEEEEECCceeecCCCCCCCCccccCCCCCCCCCCCceeeCCCCCeeEE
Q 007236 180 VKVMCYYMNGTVNLFMRPIEGISMTVDLDEMKIIGFQDRVTVPVPKADETEFRESKIKPPFRQSLKAITVVQPDGPSFTI 259 (611)
Q Consensus 180 ~~~~~f~~~~~~n~Ya~Pl~gl~~~vD~~~~kvv~i~d~~~~~~p~~~~~~y~~~~~~~~~r~~lkp~~i~QPeG~sf~v 259 (611)
+|++||++++++|+||||||||+++||++++||++|+|.+..+.|.. ..+|.++. +.|+++||++|+||||+||+|
T Consensus 237 ~~~~~y~~~~~~N~Ya~Pi~G~~~vvDl~~~kVi~i~d~g~~~~p~~-~~~Y~~~~---~~r~~lKPl~i~QPeG~sF~v 312 (721)
T PRK14696 237 LKVVSYLDVGDGNYWAHPIENLVAVVDLEQKKIIKIEEGPVVPVPMT-ARPYDGRD---RVAPAVKPLQIIEPEGKNYTI 312 (721)
T ss_pred EEEEEEEcCCCccccccccCceEEEEECCCCEEEEEecCCCCCCCCC-CcCCCccc---cccCCCCCceeeCCCCCCEEE
Confidence 99999999889999999999999999999999999999877555544 35998765 379999999999999999999
Q ss_pred eceEEeeeeeEEEEeecCCCceeEEeeEEeccCCCceeEEEEEeeeeeEeeeCCCCCccccccceeecCCCCCCccccCC
Q 007236 260 DGHMIRWADWEFHLSFDVRAGMIISLASIYDLEKQQSRRVLYKGHVSEMFVPYMDLTEEWQRRTFFDAGEYGYGLCSMTL 339 (611)
Q Consensus 260 ~g~~V~w~~W~f~~gf~~reGlvL~~v~~~D~~~~~~r~v~Yrlsl~Em~vpYgdp~~~~~~k~~~D~geyG~G~~a~~L 339 (611)
+|++|+||||+||+|||+|||||||||+|+| .+++|||+||+|||||+||||||+++|++|+|||+||||+|.+||+|
T Consensus 313 ~G~~V~W~~W~f~vgf~~ReGlvL~dv~y~d--~g~~R~v~YrlSlsEm~VPYgdp~p~~~~k~~fD~GeyG~G~~an~L 390 (721)
T PRK14696 313 TGDTIHWRNWDFHLSLDSRVGPMLSTVTYND--NGTKRKVMYEGSLGGMIVPYGDPDIGWYFKAYLDSGDYGMGTLTSPI 390 (721)
T ss_pred cCCeEEECCcEEEEecCCCcceEEEEEEEcC--CCcceeEEEEeeeeeEEEeCCCCCchhhhceeeeccccCCccccccc
Confidence 9999999999999999999999999999998 56889999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcEEeeeEEecCCCCeeeeCceEEEeEEeCCCceeecccCCCCCcEEEeeeeceeEEEEEeeeecccceeEE
Q 007236 340 EPLRDCPPNAVFMDAYFSKQDGMPRKIPKAFCIFERYAGDIMWRHTEATIPGKTVREVRQDVSLVVRTVSTFGNYDYVND 419 (611)
Q Consensus 340 ~~G~DCpg~a~YlD~~~~~~~g~p~~~~naiCi~E~d~~g~l~rH~~~~~~~~~~~~~r~~~~LVvr~i~TVgNYDYi~~ 419 (611)
++||||||+|+|||+++.+++|+|++++|||||||+| .|++|||++++.. .+++|. ++||||+|+|||||||||+
T Consensus 391 ~lGcDCpg~i~Y~D~~~~~~~G~p~~~~NaICihE~D-~G~~wkHt~~~~~-~~~~r~---r~LVvr~i~TVgNYDYif~ 465 (721)
T PRK14696 391 ARGKDAPSNAVLLDETIADYTGVPMEIPRAIAVFERY-AGPEYKHQEMGQP-NVSTER---RELVVRWISTVGNYDYIFD 465 (721)
T ss_pred ccCCCCCCCCEEeeeEEEcCCCCeEEecCEEEEeeec-CCCceeccccCCC-cceEee---eEEEEEEEEEecceeEEEE
Confidence 9999999999999999999999999999999999999 6699999999854 444444 4999999999999999999
Q ss_pred EEEeeCccEEEEEeEeEeEEeeeeeeccC-CC--CccccccceeccCccccccceeEEeeeecCCCCCCCceEEEeEEEe
Q 007236 420 WEFKQSGSIKVTVGLTGMVQVRGTTYTHK-DH--MEEDVYGTLVAENSIAIHHDHFLTYRLDLDVDGDANSFVRSKLRTT 496 (611)
Q Consensus 420 w~F~~dGtIe~~v~aTG~l~~~~~~~~~~-~~--~~~~~yGt~V~~~~~g~~HqH~f~~RlD~dIdG~~Nsv~~~d~~~~ 496 (611)
|+|||||+||+||+|||||+|+++.+... +. ..+.+|||+|+|+++|++|||+|||||||||||.+|||+++|++++
T Consensus 466 w~F~qdGtIe~eV~aTGil~t~~i~~~~~~~~~~~~~~~yGt~V~~~v~a~~HqH~f~~RlD~dIDG~~Nsv~~~d~~~~ 545 (721)
T PRK14696 466 WVFHENGTIGIDAGATGIEAVKGVKAKTMHDETAKEDTRYGTLIDHNIVGTTHQHIYNFRLDLDVDGENNSLVAMDPVVK 545 (721)
T ss_pred EEEecCceEEEEEEEEEEEEeccccccccccccccccCCCccEecCCcccccceEEEEEEEcccccCCcceEEEEeeeEc
Confidence 99999999999999999999988643111 11 1246899999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCceeeEEEEEeecchhhHHhhcCC-CCcEEEEecCCCCCCCCCcceEEEecCC--cc----ccCCCCCChhh
Q 007236 497 RVNDRRSSRKSYWTVDSKTAKTESDARIKLGS-EPAELLFVNPNKKTKMGNLIGYRLIPEG--VT----GALLSSDDHPQ 569 (611)
Q Consensus 497 ~~~~~~~p~~~~~~~~~~~~~tE~~a~~~~~~-~~r~~~i~N~~~~N~~G~p~gYrl~p~~--~~----~~~~~~~s~~~ 569 (611)
|.+ ++||++++|++++++++||++|++++++ +.|. |+|++++|++|+|+||||+|++ +. .+++.|+|++.
T Consensus 546 p~~-~~nP~g~~~~~~~t~l~tE~~a~~~~~~~~~R~--ivN~~~~N~~G~pvgYkL~p~~~~~~~~~~~~~~~p~s~~~ 622 (721)
T PRK14696 546 PNT-AGGPRTSTMQVNQYNIGNEQDAAQKFDPGTIRL--LSNPNKENRMGNPVSYQIIPYAGGTHPVAKGANFAPDEWIY 622 (721)
T ss_pred cCC-CCCccceEEEEEEEEccchhhhhhccCCccceE--EeCCCccCCCCCeeeEEEecCCCCccccccccccCCcchhh
Confidence 886 4899999999999999999999999999 8886 8999999999999999999974 42 23688999999
Q ss_pred hcccccccceEEeccCCCCCCCCCCCCCCCCCCCChhhhccC
Q 007236 570 IRAAFTNYNVWVTAYNKSEKWAGGLYADQSHGDDTLAVWSNR 611 (611)
Q Consensus 570 ~ra~fa~~~lwVT~y~~~E~~asg~y~~qs~g~~gl~~w~~r 611 (611)
+||+||+||||||+|+|+|+||+|+|+|||.|++||+.|+++
T Consensus 623 ~Ra~fa~~~lwVT~y~d~E~~aaG~y~~qs~g~~gl~~w~~~ 664 (721)
T PRK14696 623 HRLSFMDKQLWVTRYHPGERFPEGKYPNRSTHDTGLGQYSKD 664 (721)
T ss_pred hhhhhhhCcEEEeccCCcccCCCCCCccCCCCCCCHHHHhhC
Confidence 999999999999999999999999999999999999999864
No 4
>COG3733 TynA Cu2+-containing amine oxidase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=7.3e-159 Score=1258.60 Aligned_cols=563 Identities=31% Similarity=0.564 Sum_probs=526.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEccCCCHHHHHhhhhcCCCCCCCcEEEEEEEe--CCeeEEEE
Q 007236 25 HQYHPLDSLTPSEFSQIRSIVTKAYPESSTHKLTFQYVGLEEPSKQTVISWLKNETTTNPPRQAFVIARI--DHQTHELI 102 (611)
Q Consensus 25 ~~~HPldpLs~~Ei~~a~~il~~~~~~~~~~~~~f~~I~L~eP~K~~vl~~l~~~~~~~p~R~A~vv~~~--~~~~~E~v 102 (611)
..+|||||||++||++|.+|||++...+ ++++|..|+|.||+|++|++|.-.+ .++.|.|+++++. +...+|++
T Consensus 27 ~~shPLdpLt~~Eik~aVEivr~e~~~~--~~~~F~~VtL~eP~K~~v~~f~~~~--~~ieR~a~~~~~~~~~~~i~Eav 102 (654)
T COG3733 27 ERSHPLDPLTADEIKQAVEIVRAEADFK--KNFAFTEVTLLEPDKQEVLAFRLEN--KPIERKALAVVYELDGKGIYEAV 102 (654)
T ss_pred ccCCCCCccCHHHHHHHHHHHHhhcccC--CceeeEEEEecCCchHHHHHHHhcC--CCcchhhhhheeeccCCceEEEE
Confidence 3469999999999999999999988762 6899999999999999999997653 4689999999986 67899999
Q ss_pred EeCCCCeEEEEEeeCCCCCCCCCHHHHHHHHHHhhcCchHHHHHHHhCC-CCcceEEccccccccCCccccCCCCceEEE
Q 007236 103 VDLSLQEIASKRIYSGYGYPMFTFEDQENADKLAFTYPPFVASIRRRGL-KLEEVVCESFSVGWYGAEEEEGKNKKRIVK 181 (611)
Q Consensus 103 V~L~~~~v~~~~~~~~~~~p~~~~ee~~~~e~~~~~~p~~~~a~~~~g~-~~~~v~~~~~~~G~~~~~~~~~~~~~Rl~~ 181 (611)
|+|++.+|.+|+.+++ .+|+++.|||..+|.+++++|+|+|||+|||+ |+++|.||||+.|+|+.++. .++|+++
T Consensus 103 V~L~~nkv~~~q~i~~-a~p~i~ldef~~~e~iVr~d~~~~eA~~krGi~D~~~V~vdpwt~G~~~~~~~---~grr~~~ 178 (654)
T COG3733 103 VDLDNNKVLSWQPIKD-AHPMITLDEFASVENIVRNDPRFIEACKKRGITDMDQVIVDPWTAGYFDEEGL---KGRRRAL 178 (654)
T ss_pred EEcccceeeeeEeccc-cCCceeHHHHHHHHHHHhcCHHHHHHHHhcCCchhhceEeccccccccCcccc---ccceeEE
Confidence 9999999999999986 59999999999999999999999999999999 89999999999999874333 3889999
Q ss_pred EEEEEec-CCCCCccCCcCCcEEEEecCccEEEEEECCceeecCCCCCCCCccccCCCCCCCCCCCceeeCCCCCeeEEe
Q 007236 182 VMCYYMN-GTVNLFMRPIEGISMTVDLDEMKIIGFQDRVTVPVPKADETEFRESKIKPPFRQSLKAITVVQPDGPSFTID 260 (611)
Q Consensus 182 ~~~f~~~-~~~n~Ya~Pl~gl~~~vD~~~~kvv~i~d~~~~~~p~~~~~~y~~~~~~~~~r~~lkp~~i~QPeG~sf~v~ 260 (611)
.++|+|. .++|+|+|||+||+++||++++||++|+|++++|+|+. ..+|..+.++ ..+.++||++|.||||+||+|+
T Consensus 179 ~~m~yr~~e~~N~y~hPi~gl~aiVDl~~~kVv~idd~~vvPlp~~-~~ny~~e~i~-~~~~~~KpiqI~QPeg~sf~i~ 256 (654)
T COG3733 179 KVMWYRDVEDDNYYAHPIEGLVAIVDLEKKKVVRIDDHPVVPLPMK-RANYGRERIG-KALGPVKPIQIIQPEGKSFTIT 256 (654)
T ss_pred EEEEEEecCCCCcccccccceeeEEEcccCeEEEecCCCccccccc-ccCcCHHHhh-hhcCCCCCceeecCCCceEEEe
Confidence 9999994 89999999999999999999999999999999999984 5688776664 3355599999999999999999
Q ss_pred ceEEeeeeeEEEEeecCCCceeEEeeEEeccCCCceeEEEEEeeeeeEeeeCCCCCccccccceeecCCCCCCccccCCC
Q 007236 261 GHMIRWADWEFHLSFDVRAGMIISLASIYDLEKQQSRRVLYKGHVSEMFVPYMDLTEEWQRRTFFDAGEYGYGLCSMTLE 340 (611)
Q Consensus 261 g~~V~w~~W~f~~gf~~reGlvL~~v~~~D~~~~~~r~v~Yrlsl~Em~vpYgdp~~~~~~k~~~D~geyG~G~~a~~L~ 340 (611)
|++|+||+|+||+|||+|||||||||+|.| +|..|+|+||+||+||+||||||+++|++|++||+||||+|.++++|+
T Consensus 257 G~~i~W~~w~frig~n~ReGlvl~dVsY~D--~g~~Rpv~YraSl~eMvVPYGdPd~~h~~K~~fD~GeYglG~l~~pla 334 (654)
T COG3733 257 GDEISWQNWRFRIGMNPREGLVLSDVSYND--NGNKRPVLYRASLVEMVVPYGDPDPGHYFKNAFDSGEYGLGTLTSPLA 334 (654)
T ss_pred cCEEEEeeeeEEEeccccCCeEEEEEEEcC--CCccceEEEEeeecceeeecCCCCcchhhhhcccccccCccccccchh
Confidence 999999999999999999999999999999 677899999999999999999999999999999999999999999999
Q ss_pred CCCCCCC-CcEEeeeEEecCCCCeeeeCceEEEeEEeCCCceeecccCCCCCcEEEeeeeceeEEEEEeeeecccceeEE
Q 007236 341 PLRDCPP-NAVFMDAYFSKQDGMPRKIPKAFCIFERYAGDIMWRHTEATIPGKTVREVRQDVSLVVRTVSTFGNYDYVND 419 (611)
Q Consensus 341 ~G~DCpg-~a~YlD~~~~~~~g~p~~~~naiCi~E~d~~g~l~rH~~~~~~~~~~~~~r~~~~LVvr~i~TVgNYDYi~~ 419 (611)
+| ||.| .|+|||+++++.+|+|+++||||||||+| .|+||||+|+|++..+++|.| .||||.|+||+||||+|+
T Consensus 335 lG-dc~g~~i~~lDa~~a~~tG~p~~i~~AIcIhEed-~GvlwKH~d~rs~~~~trr~r---~LVVs~i~Tv~NYdYg~~ 409 (654)
T COG3733 335 LG-DCAGSNIVLLDATFANYTGEPMTIPNAICIHEED-AGVLWKHQDFRSPNVETRRAR---GLVVSWIATVANYDYGFY 409 (654)
T ss_pred hc-ccccceeEEEeeeeeccCCceEEecceeEEEecc-ccceeeehhhcCCccceeecc---ceEEEEEEeecccceeEE
Confidence 99 9988 99999999999999999999999999999 889999999999988777776 899999999999999999
Q ss_pred EEEeeCccEEEEEeEeEeEEeeeeeeccCCCCc-cccccceeccCccccccceeEEeeeecCCCCCCCceEEEeEEEeec
Q 007236 420 WEFKQSGSIKVTVGLTGMVQVRGTTYTHKDHME-EDVYGTLVAENSIAIHHDHFLTYRLDLDVDGDANSFVRSKLRTTRV 498 (611)
Q Consensus 420 w~F~~dGtIe~~v~aTG~l~~~~~~~~~~~~~~-~~~yGt~V~~~~~g~~HqH~f~~RlD~dIdG~~Nsv~~~d~~~~~~ 498 (611)
|+|||||+||+|++||||++|++.. +.+ ...||++|.|++.|++||||||+||||||||.+|||+++|++..|.
T Consensus 410 WifhqDGtIe~e~klTGIin~~a~~-----e~~p~~~yGt~v~~~v~g~~HQH~Fn~RLdm~VDG~~Nsv~e~nv~~~P~ 484 (654)
T COG3733 410 WIFHQDGTIEFEAKLTGIINTKAIA-----EGQPDPTYGTLVDPNVVGHTHQHFFNARLDMDVDGERNSVVEMNVVGAPI 484 (654)
T ss_pred EEEEcCceEEEeecceeEEEeehhc-----CCCCCCCccceeccccccccceeEEEeeecccccCcccceEEEEcccCCC
Confidence 9999999999999999999998652 222 2459999999999999999999999999999999999999877766
Q ss_pred CCCCCCCceeeEEEEEeecchhhHHhhcCC-CCcEEEEecCCCCCCCCCcceEEEecCCccccCCCCCChhhhccccccc
Q 007236 499 NDRRSSRKSYWTVDSKTAKTESDARIKLGS-EPAELLFVNPNKKTKMGNLIGYRLIPEGVTGALLSSDDHPQIRAAFTNY 577 (611)
Q Consensus 499 ~~~~~p~~~~~~~~~~~~~tE~~a~~~~~~-~~r~~~i~N~~~~N~~G~p~gYrl~p~~~~~~~~~~~s~~~~ra~fa~~ 577 (611)
+ ..||+||+|+++++++++|++|.+++|+ +.|+|+|+|+||+|.+|+|++|||+|+.++.+++.++|...+|++||+|
T Consensus 485 ~-~~np~gNaf~~e~t~l~~e~dA~r~~d~~T~R~W~I~NpnkkN~~G~PvaYkLi~~~~~~~~~~~gs~v~~R~~Fa~~ 563 (654)
T COG3733 485 T-KGNPYGNAFQVEETVLKNEKDACRDADPKTSRYWKIANPNKKNYLGNPVAYKLIPGHNPTPPVAEGSQVRHRAGFATK 563 (654)
T ss_pred C-CCCCccceEEEecccCccHHHHHhhcCCcccceEEecCcccccccCCCceeEEecCCCCCCcCCCCcchhhhhhhccc
Confidence 3 4899999999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred ceEEeccCCCCCCCCCCCCCCCCCCCChhhhcc
Q 007236 578 NVWVTAYNKSEKWAGGLYADQSHGDDTLAVWSN 610 (611)
Q Consensus 578 ~lwVT~y~~~E~~asg~y~~qs~g~~gl~~w~~ 610 (611)
|||||+|++.|+||+|+|+|||.|++|||.|++
T Consensus 564 hlwVT~y~p~ErYp~GdYpnq~~~~~GLp~yi~ 596 (654)
T COG3733 564 HLWVTPYHPGERYPAGDYPNQSAGGKGLPEYIK 596 (654)
T ss_pred eEEEeccCcccccCCCCCCCCCCCCCChhhhhh
Confidence 999999999999999999999999999999986
No 5
>KOG1186 consensus Copper amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.1e-139 Score=1141.20 Aligned_cols=577 Identities=52% Similarity=0.882 Sum_probs=528.6
Q ss_pred cCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEccCCCHHHHHhhhhcCCCCCCCcEEEEEEEeCCeeEE
Q 007236 21 FVPSHQYHPLDSLTPSEFSQIRSIVTKAYPESSTHKLTFQYVGLEEPSKQTVISWLKNETTTNPPRQAFVIARIDHQTHE 100 (611)
Q Consensus 21 ~~~~~~~HPldpLs~~Ei~~a~~il~~~~~~~~~~~~~f~~I~L~eP~K~~vl~~l~~~~~~~p~R~A~vv~~~~~~~~E 100 (611)
+++....|||||||+.||..++.||+...++.+.....|..|.|.||+|+-+|.|+.+++..+|+|+|+||.+.+++++|
T Consensus 21 ~s~~~p~hPlDPLte~EL~kvr~iL~~~d~~s~~~~~~~~av~l~eP~K~~vlsw~~gP~~~pPpRRA~vVaR~gg~t~e 100 (670)
T KOG1186|consen 21 ASQERPSHPLDPLTELELPKVAAILAHLDPGSPHPAFEAVAVVLFEPQKQPVLSWLSGPLPHPPPRRALVVERHGGPTPE 100 (670)
T ss_pred ccCCCCCCCcCccchhhhhHHHHHHhhcccCCCCCceEEEEEEecCCCcCccceeccCCCCCCCcceeEEEeecCCCceE
Confidence 44566789999999999999999999987654556778999999999999999999854345789999999999999999
Q ss_pred EEEeCCCCeEEEEEee-CCCCCCCCCHHHHHHHHHHhhcCchHHHHHHHhCCCCcceEEccccccccCCccccCCCCceE
Q 007236 101 LIVDLSLQEIASKRIY-SGYGYPMFTFEDQENADKLAFTYPPFVASIRRRGLKLEEVVCESFSVGWYGAEEEEGKNKKRI 179 (611)
Q Consensus 101 ~vV~L~~~~v~~~~~~-~~~~~p~~~~ee~~~~e~~~~~~p~~~~a~~~~g~~~~~v~~~~~~~G~~~~~~~~~~~~~Rl 179 (611)
++|+|+++++++.+.. .+.+.|+++.+|+.+..+++++.+.|..++.++|+.++.+.|.+|+.|||+...+. -+|+
T Consensus 101 ~~vdlst~evvs~~~~~~~~g~P~lT~~e~~~~s~~~l~~~~f~~si~~rG~~~s~vic~~~t~Gwyge~~~g---~~Rl 177 (670)
T KOG1186|consen 101 ARVDLSTAEVVSIKHHLVGNGYPILTADELFNTSGRVLAFKPFCPRGLRRGDRMSWVVCYPNTSGWYGEHPVG---LERL 177 (670)
T ss_pred EEEecchheeeecccccccCccccccHHHHHhhhcCCccccccchhhhccCCcceeEEEecceeeecccCCcc---hhhh
Confidence 9999999999997665 67789999999999999999999999999999999999999999999999943221 3799
Q ss_pred EEEEEEEecCCCCCccCCcCCcEEEEecCccEEEEEECCceeecCCCCCCCCccccCCCCCCCCCCCceeeCCCCCeeEE
Q 007236 180 VKVMCYYMNGTVNLFMRPIEGISMTVDLDEMKIIGFQDRVTVPVPKADETEFRESKIKPPFRQSLKAITVVQPDGPSFTI 259 (611)
Q Consensus 180 ~~~~~f~~~~~~n~Ya~Pl~gl~~~vD~~~~kvv~i~d~~~~~~p~~~~~~y~~~~~~~~~r~~lkp~~i~QPeG~sf~v 259 (611)
++..||++.+..|+|.+|++|++++||++++||+++.|+..+|+|+..+++|+.+... .-+||+.++||||||+|
T Consensus 178 ik~~~f~~~~~~n~y~rpieg~yi~vdld~~kVi~~~d~~~iP~P~~~Gt~~Rs~~~p-----~~~pLq~isPeGP~FrV 252 (670)
T KOG1186|consen 178 IKHMAFYRAGWVNQQVRPIEGFYIIVDLDEMKVIAGRDRVRVPLPKAKGTELRSSVLP-----GFKPLQPISPEGPGFRV 252 (670)
T ss_pred hhhcccccCCCeeEEEeecCceEEeeccccceEEEEecccccccCCCCCCccccccCC-----CCccccccCCCCCceEE
Confidence 9999999988899999999999999999999999999999899999888888644331 33446666799999999
Q ss_pred eceEEeeeeeEEEEeecCCCceeEEeeEEeccCCCceeEEEEEeeeeeEeeeCCCCCccccccceeecCCCCCCccccCC
Q 007236 260 DGHMIRWADWEFHLSFDVRAGMIISLASIYDLEKQQSRRVLYKGHVSEMFVPYMDLTEEWQRRTFFDAGEYGYGLCSMTL 339 (611)
Q Consensus 260 ~g~~V~w~~W~f~~gf~~reGlvL~~v~~~D~~~~~~r~v~Yrlsl~Em~vpYgdp~~~~~~k~~~D~geyG~G~~a~~L 339 (611)
+|+.|+|++|+||+||+.|+||||++|+|.|. ..-|||+||+|+|||+||||||+++||+|+|||+||||+|..|++|
T Consensus 253 eG~~V~w~nW~Fh~~~~~r~Gl~is~v~~~d~--~~~r~v~Y~~s~~E~~vpYgdp~~~~~~~~y~D~Ge~G~G~~a~~L 330 (670)
T KOG1186|consen 253 EGHLVRWANWEFHIGFDVRAGLVISDASFFDE--DVYRRVLYKGSLSEMFVPYGDPSPDWYFKTYLDCGEFGLGQYAVSL 330 (670)
T ss_pred EEEEEEeeccEEEEccCCccceEEEEEEEcCC--CceeeEEEEeeeeeeEEecCCCCchhheeeeecccccCCCcccccc
Confidence 99999999999999999999999999999994 4579999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcEEeeeEEecCCCCeeeeCceEEEeEEeCCCceeecccCCCCCcEEEeeeeceeEEEEEeeeecccceeEE
Q 007236 340 EPLRDCPPNAVFMDAYFSKQDGMPRKIPKAFCIFERYAGDIMWRHTEATIPGKTVREVRQDVSLVVRTVSTFGNYDYVND 419 (611)
Q Consensus 340 ~~G~DCpg~a~YlD~~~~~~~g~p~~~~naiCi~E~d~~g~l~rH~~~~~~~~~~~~~r~~~~LVvr~i~TVgNYDYi~~ 419 (611)
++|||||+.|+|||+++...+|+|.+++||+||||+++|.|||||+|+...+..++++|+++.||||+++||||||||||
T Consensus 331 ~~g~DCp~~a~y~D~~f~~~~g~p~~~~n~~CifE~~~G~~l~rH~~~~~~~~~~~~~~~~~~LVvr~~~tv~NYdYi~d 410 (670)
T KOG1186|consen 331 APGTDCPGNATYMDGHFAGQDGTPEKIPNAMCIFEKYAGDILWRHTEAEIPGLHITEVRPDVSLVVRMVTTVGNYDYIVD 410 (670)
T ss_pred ccCCCCCCcceEEEEEEecCCCCcEEecCcEEEEEccCCCceeeccccccCCCcccccccccEEEEEEeeeecccceEEE
Confidence 99999999999999999999999999999999999998889999999877766789999999999999999999999999
Q ss_pred EEEeeCccEEEEEeEeEeEEeeeeeeccCCCCccccccceeccCccccccceeEEeeeecCCCCCCCceEEEeEEEeecC
Q 007236 420 WEFKQSGSIKVTVGLTGMVQVRGTTYTHKDHMEEDVYGTLVAENSIAIHHDHFLTYRLDLDVDGDANSFVRSKLRTTRVN 499 (611)
Q Consensus 420 w~F~~dGtIe~~v~aTG~l~~~~~~~~~~~~~~~~~yGt~V~~~~~g~~HqH~f~~RlD~dIdG~~Nsv~~~d~~~~~~~ 499 (611)
|+||+||+||++|+|||||+++++.|.+. ...|||+|+++++|++|||+|+|||||||||.+|++...+.+..+..
T Consensus 411 ~~F~~~G~ie~~v~lTG~l~~~~~~~~~~----~~~~Gt~v~~~~ig~~H~H~~~~rldldvdG~~n~~~v~~~~~~~~~ 486 (670)
T KOG1186|consen 411 YEFKPSGVIEAGVGLTGVLEVKPVEYGET----SDIYGTIVAENTIGVNHDHFVTFRLDLDVDGTKNNSFVRDELVTPRT 486 (670)
T ss_pred EEEecCCeEEEEEeeEEEEEeeccccccc----cccccceecccccccccceEEEEEEcccccCCccceeeeeeEeeccc
Confidence 99999999999999999999998865322 36899999999999999999999999999999766665566656655
Q ss_pred CC-CCCCceeeEEEEEeecchhhHHhhcCC-CCcEEEEecCCCCCCCCCcceEEEecCCccccCCCCCChhhhccccccc
Q 007236 500 DR-RSSRKSYWTVDSKTAKTESDARIKLGS-EPAELLFVNPNKKTKMGNLIGYRLIPEGVTGALLSSDDHPQIRAAFTNY 577 (611)
Q Consensus 500 ~~-~~p~~~~~~~~~~~~~tE~~a~~~~~~-~~r~~~i~N~~~~N~~G~p~gYrl~p~~~~~~~~~~~s~~~~ra~fa~~ 577 (611)
.+ .++++++|+++++++++|++|+.+++. +++.|.|+|+|++|+||||+||||+|++++.+++++++.+++||+|++|
T Consensus 487 ~~~~~~~~~~~~~~~~~~kte~~~~~~~~~~~~~~~~~~n~n~~~~~G~~~gYrl~~~s~a~~ll~~~~~~~~r~af~~y 566 (670)
T KOG1186|consen 487 PPSVTPRKSYWTTKRKTAKTEAEARAKLNGLKAEELLVVNPNKKTKHGNPVGYRLVPGSTAGPLLPQDDYPQIRAAFTNY 566 (670)
T ss_pred CCCCCcccchhhhhhhhhhhHHHHhhhhccCCCceEEEECCCCccccCCccceEEeeCCcccccCCCCchHHhhhhhhcc
Confidence 55 456799999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred ceEEeccCCCCCCCCCCCCCCCCCCCChhhhccC
Q 007236 578 NVWVTAYNKSEKWAGGLYADQSHGDDTLAVWSNR 611 (611)
Q Consensus 578 ~lwVT~y~~~E~~asg~y~~qs~g~~gl~~w~~r 611 (611)
|||||+|+++|.||||.|++||+|++||+.|.+|
T Consensus 567 ~l~VT~y~~~E~~~~g~y~~~~~~~~tl~~w~~~ 600 (670)
T KOG1186|consen 567 NLWVTPYNESEVWASGLYADQSQGDDTLAVWSQR 600 (670)
T ss_pred eeEEeccCccccCcccccccCCCCCCcceehhhc
Confidence 9999999999999999999999999999999875
No 6
>PF01179 Cu_amine_oxid: Copper amine oxidase, enzyme domain; InterPro: IPR015798 Amine oxidases (AO) are enzymes that catalyse the oxidation of a wide range of biogenic amines including many neurotransmitters, histamine and xenobiotic amines. There are two classes of amine oxidases: flavin-containing (1.4.3.4 from EC) and copper-containing (1.4.3.6 from EC). Copper-containing AO act as a disulphide-linked homodimer. They catalyse the oxidation of primary amines to aldehydes, with the subsequent release of ammonia and hydrogen peroxide, which requires one copper ion per subunit and topaquinone as cofactor []: RCH2NH2 + H2O + O2 = RCHO + NH3 + H2O2 Copper-containing amine oxidases are found in bacteria, fungi, plants and animals. In prokaryotes, the enzyme enables various amine substrates to be used as sources of carbon and nitrogen [, ]. In eukaryotes they have a broader range of functions, including cell differentiation and growth, wound healing, detoxification and cell signalling []. The copper amine oxidases occur as mushroom-shaped homodimers of 70-95 kDa, each monomer containing a copper ion and a covalently bound redox cofactor, topaquinone (TPQ). TPQ is formed by post-translational modification of a conserved tyrosine residue. The copper ion is coordinated with three histidine residues and two water molecules in a distorted square pyramidal geometry, and has a dual function in catalysis and TPQ biogenesis. The catalytic domain is the largest of the 3-4 domains found in copper amine oxidases, and consists of a beta sandwich of 18 strands in two sheets. The active site is buried and requires a conformational change to allow the substrate access. The two N-terminal domains share a common structural fold, its core consisting of a five-stranded antiparallel beta sheet twisted around an alpha helix. The D1 domains from the two subunits comprise the stalk, of the mushroom-shaped dimer, and interact with each other but do not pack tightly against each other [, ]. This entry represents the C-terminal catalytic domain of copper amine oxidases, and has a super-sandwich fold consisting of 18 beta-strands in 2 sheets []. A domain with a similar structural fold can be found as the third domain in lysyl oxidase PplO [].; GO: 0005507 copper ion binding, 0008131 primary amine oxidase activity, 0048038 quinone binding, 0009308 amine metabolic process, 0055114 oxidation-reduction process; PDB: 1US1_A 2C11_B 3ALA_E 2Y73_B 2C10_B 1PU4_B 2Y74_B 1W2Z_D 1KSI_B 1RKY_A ....
Probab=100.00 E-value=1.9e-118 Score=964.36 Aligned_cols=353 Identities=38% Similarity=0.676 Sum_probs=314.5
Q ss_pred CceeeCCCCCeeEEeceEEeeeeeEEEEeecCCCceeEEeeEEeccCCCceeEEEEEeeeeeEeeeCCCCCcccccccee
Q 007236 246 AITVVQPDGPSFTIDGHMIRWADWEFHLSFDVRAGMIISLASIYDLEKQQSRRVLYKGHVSEMFVPYMDLTEEWQRRTFF 325 (611)
Q Consensus 246 p~~i~QPeG~sf~v~g~~V~w~~W~f~~gf~~reGlvL~~v~~~D~~~~~~r~v~Yrlsl~Em~vpYgdp~~~~~~k~~~ 325 (611)
||+|+||||+||+|+|++|+||+|+||++|++|||||||||+|.| ++++|+||+|||||+||||||+++|++|+||
T Consensus 1 Pl~i~qP~G~sf~v~g~~v~w~~W~f~~~~~~r~Gl~l~dV~y~~----~~~~I~yr~sl~Em~vpY~d~~~~~~~~~~~ 76 (413)
T PF01179_consen 1 PLHIVQPEGPSFTVDGNYVEWQGWSFRVGFNPREGLVLHDVRYKG----ERRPILYRLSLQEMVVPYGDPDPPHHRKNAF 76 (413)
T ss_dssp -EEEE-TTS-SEEEETTEEEETTEEEEEEEETTTEEEEEEEEETT----EEEEEEEEEEEEEEEEEEE-SSTTHHH-EEE
T ss_pred CcceeCCCCCCEEEeCCEEEeCCcEEEEECCCCccceEEEEEEeC----CCccEEEEEeeeeeeeecCCCCchhhccccc
Confidence 899999999999999999999999999999999999999999977 2225999999999999999999999999999
Q ss_pred ecCCCCCCccccCCCCCCCCCCCcEEeeeEEecCCCCeeeeCceEEEeEEeCCCceeecccCCCCCcEEEeeeeceeEEE
Q 007236 326 DAGEYGYGLCSMTLEPLRDCPPNAVFMDAYFSKQDGMPRKIPKAFCIFERYAGDIMWRHTEATIPGKTVREVRQDVSLVV 405 (611)
Q Consensus 326 D~geyG~G~~a~~L~~G~DCpg~a~YlD~~~~~~~g~p~~~~naiCi~E~d~~g~l~rH~~~~~~~~~~~~~r~~~~LVv 405 (611)
|+||||+|.++++|++||||||+|+|||+++.+++|+|++++|||||||+|.| |||||++++++... ++++++|||
T Consensus 77 D~geyG~G~~~~~L~~G~DCpg~~~yld~~~~~~~g~p~~~~naiCi~E~d~G-~l~kH~~~~~~~~~---~~r~~~LVv 152 (413)
T PF01179_consen 77 DSGEYGLGSMANSLVLGCDCPGTITYLDAVLADDSGEPVTIPNAICIFEEDAG-PLWKHTDYRTGRFE---VRRSRRLVV 152 (413)
T ss_dssp HHHHTTTTTTBE-STTTTSS-TTSEEEEEEEEETTSSEEEEEEEEEEEEEEEE-EEEEEEETTSSEEE---EEEEEEEEE
T ss_pred cccccccCccccccccCCCCCceeEEcceEEECCCCCceeccceEEEEEecCC-chhhcccccccccc---eeeccEEEE
Confidence 99999999999999999999999999999999999999999999999999955 99999999986554 455559999
Q ss_pred EEeeeecccceeEEEEEeeCccEEEEEeEeEeEEeeeeeeccCCCCccccccceeccCccccccceeEEeeeecCCCCCC
Q 007236 406 RTVSTFGNYDYVNDWEFKQSGSIKVTVGLTGMVQVRGTTYTHKDHMEEDVYGTLVAENSIAIHHDHFLTYRLDLDVDGDA 485 (611)
Q Consensus 406 r~i~TVgNYDYi~~w~F~~dGtIe~~v~aTG~l~~~~~~~~~~~~~~~~~yGt~V~~~~~g~~HqH~f~~RlD~dIdG~~ 485 (611)
|+|+|||||||||||+|||||+||++|+|||||++.+. . +....+||++|+|+++|++|||+|||||||||||++
T Consensus 153 r~i~TV~NYDYi~~~~F~~dG~Ie~~v~aTGil~~~~~--~---~~~~~~yG~~V~~~~~a~~HqH~f~~RlD~dIdG~~ 227 (413)
T PF01179_consen 153 RTISTVGNYDYIFDWIFYQDGSIEVEVRATGILSTSPY--A---PGEQSPYGTRVAPGVMAPNHQHFFNFRLDFDIDGTN 227 (413)
T ss_dssp EEEEEETTEEEEEEEEEETTS-EEEEEEEEE---EEET--T---TTCGGGSEEEEETTEEEEEEEEEEEEEEEE-TTSSE
T ss_pred EEEEeccccceEEEEEEecCceEEEEEEeeeEEEEEec--C---CCCccCCcceEcCCccccceeEEEEEEEccccCCCC
Confidence 99999999999999999999999999999999998653 1 122478999999999999999999999999999999
Q ss_pred CceEEEeEEEeec--CCCCCCCceeeEEEEEeecchhhHHhhcCC-CCcEEEEecCCCCCCCCCcceEEEecCCccccCC
Q 007236 486 NSFVRSKLRTTRV--NDRRSSRKSYWTVDSKTAKTESDARIKLGS-EPAELLFVNPNKKTKMGNLIGYRLIPEGVTGALL 562 (611)
Q Consensus 486 Nsv~~~d~~~~~~--~~~~~p~~~~~~~~~~~~~tE~~a~~~~~~-~~r~~~i~N~~~~N~~G~p~gYrl~p~~~~~~~~ 562 (611)
|||+++|+++++. +...||++++|+++++++++|++|++++++ ++|+|+|+|++++|++|+|+||||+|++++++++
T Consensus 228 Nsv~~~d~~~~~~~~~~~~np~~~~~~~~~t~~~tE~~a~~~~~~~~~r~w~vvN~~~~N~~G~p~gY~l~~~~~~~~l~ 307 (413)
T PF01179_consen 228 NSVVEVDIVPEPVTTPWSPNPYGNAFKTERTVLETEAEAARDFDPSTPRYWKVVNPNKKNPWGHPVGYRLQPGSSAHLLA 307 (413)
T ss_dssp EEEEEEEEEEEEEEETTSTTSEEEEEEEEEEEE-BGGGGEBETTCGGTEEEEEEEEEEEETTSSEEEEEEEEECBSS-SS
T ss_pred CeEEEEEeEEcccccCCCCCCccceeEEEEEeeCChhHhhhccCCCCccEEEEEcCCccccccCCceEEEecCCcccccC
Confidence 9999999999987 334789999999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCChhhhcccccccceEEeccCCCCCCCCCCCCCCCCCCCChhhhccC
Q 007236 563 SSDDHPQIRAAFTNYNVWVTAYNKSEKWAGGLYADQSHGDDTLAVWSNR 611 (611)
Q Consensus 563 ~~~s~~~~ra~fa~~~lwVT~y~~~E~~asg~y~~qs~g~~gl~~w~~r 611 (611)
+++|+..+||+||+|+||||||+|+|+||||+|++|+++++||++|+++
T Consensus 308 ~~~s~~~~ra~fa~~~lwVT~y~d~E~~asg~y~~q~~~~~~l~~~~~~ 356 (413)
T PF01179_consen 308 PPDSWVARRASFARHHLWVTKYKDSERYASGEYNNQSPGDVGLPDWIAD 356 (413)
T ss_dssp STTSCHHHHTGGGGSSEEEEE--TTGS-ST-TTTTT-SSSSSHHHHHTT
T ss_pred CCcchhhhccccccCceEEeecCCCccCCCCCCccCCCCCCCHHHHhcc
Confidence 9999999999999999999999999999999999999999999999963
No 7
>PF02728 Cu_amine_oxidN3: Copper amine oxidase, N3 domain; InterPro: IPR015802 Amine oxidases (AO) are enzymes that catalyse the oxidation of a wide range of biogenic amines including many neurotransmitters, histamine and xenobiotic amines. There are two classes of amine oxidases: flavin-containing (1.4.3.4 from EC) and copper-containing (1.4.3.6 from EC). Copper-containing AO act as a disulphide-linked homodimer. They catalyse the oxidation of primary amines to aldehydes, with the subsequent release of ammonia and hydrogen peroxide, which requires one copper ion per subunit and topaquinone as cofactor []: RCH2NH2 + H2O + O2 = RCHO + NH3 + H2O2 Copper-containing amine oxidases are found in bacteria, fungi, plants and animals. In prokaryotes, the enzyme enables various amine substrates to be used as sources of carbon and nitrogen [, ]. In eukaryotes they have a broader range of functions, including cell differentiation and growth, wound healing, detoxification and cell signalling []. The copper amine oxidases occur as mushroom-shaped homodimers of 70-95 kDa, each monomer containing a copper ion and a covalently bound redox cofactor, topaquinone (TPQ). TPQ is formed by post-translational modification of a conserved tyrosine residue. The copper ion is coordinated with three histidine residues and two water molecules in a distorted square pyramidal geometry, and has a dual function in catalysis and TPQ biogenesis. The catalytic domain is the largest of the 3-4 domains found in copper amine oxidases, and consists of a beta sandwich of 18 strands in two sheets. The active site is buried and requires a conformational change to allow the substrate access. The two N-terminal domains share a common structural fold, its core consisting of a five-stranded antiparallel beta sheet twisted around an alpha helix. The D1 domains from the two subunits comprise the stalk, of the mushroom-shaped dimer, and interact with each other but do not pack tightly against each other [, ]. This entry represents one (N3) of the two N-terminal domains (N2/N3) that share a similar structure.; GO: 0005507 copper ion binding, 0008131 primary amine oxidase activity, 0048038 quinone binding, 0009308 amine metabolic process, 0055114 oxidation-reduction process; PDB: 1TU5_A 2PNC_B 3MPH_B 3HII_B 3HI7_A 3K5T_A 3HIG_A 1SPU_A 2WGQ_A 2WO0_A ....
Probab=99.87 E-value=2.3e-22 Score=178.62 Aligned_cols=99 Identities=35% Similarity=0.721 Sum_probs=83.0
Q ss_pred CCCCHHHHHHHHHHhhcCchHHHHHHHhCC-CCcceEEccccccccCCccccCCCCceEEEEEEEEecCCCCCccCCcCC
Q 007236 122 PMFTFEDQENADKLAFTYPPFVASIRRRGL-KLEEVVCESFSVGWYGAEEEEGKNKKRIVKVMCYYMNGTVNLFMRPIEG 200 (611)
Q Consensus 122 p~~~~ee~~~~e~~~~~~p~~~~a~~~~g~-~~~~v~~~~~~~G~~~~~~~~~~~~~Rl~~~~~f~~~~~~n~Ya~Pl~g 200 (611)
|+++.+|+.+++++++++|+|+++|+++|+ +++.|.|++|++||++..+ + ++|++|++||+|...+|+|+|||+|
T Consensus 1 ppi~~~E~~~~~~~~~~~p~~~~al~~rgi~d~~~v~~~pw~~g~~g~~~-~---g~Rl~~~~~~~r~~~~n~YahPi~g 76 (101)
T PF02728_consen 1 PPITLEEFAEAEEIVKADPEFQAALKKRGITDMDEVCCDPWSYGPFGEES-E---GRRLTWVLCFMRDSGNNFYAHPIEG 76 (101)
T ss_dssp S---HHHHHHHHHHHHTGHHHHHHHHHTTCSCGGGEEEEEEE-SSSSSST-T---TS-EEEEEEEE-SSTS-GGGSEEEC
T ss_pred CCcCHHHHHHHHHHHHHCHHHHHHHHHhCCCCcCeEEEeeecccCCCCCC-C---CceEEEEEEEEEcCCCcccccccCc
Confidence 789999999999999999999999999999 6899999999999988544 3 7899999999997555999999999
Q ss_pred cEEEEecCccEEEEEECCc-eeecC
Q 007236 201 ISMTVDLDEMKIIGFQDRV-TVPVP 224 (611)
Q Consensus 201 l~~~vD~~~~kvv~i~d~~-~~~~p 224 (611)
|+++||++++||++|+|++ .+|.|
T Consensus 77 l~~~vD~~~~~vi~i~d~~v~~p~p 101 (101)
T PF02728_consen 77 LEPLVDLDSMEVIRIEDRGVFYPGP 101 (101)
T ss_dssp EEEEEETTTTEEEEEEEEEEEETT-
T ss_pred eEEEEECCCCEEEEEEeCCceeeCC
Confidence 9999999999999999988 46654
No 8
>PF02727 Cu_amine_oxidN2: Copper amine oxidase, N2 domain; InterPro: IPR015800 Amine oxidases (AO) are enzymes that catalyse the oxidation of a wide range of biogenic amines including many neurotransmitters, histamine and xenobiotic amines. There are two classes of amine oxidases: flavin-containing (1.4.3.4 from EC) and copper-containing (1.4.3.6 from EC). Copper-containing AO act as a disulphide-linked homodimer. They catalyse the oxidation of primary amines to aldehydes, with the subsequent release of ammonia and hydrogen peroxide, which requires one copper ion per subunit and topaquinone as cofactor []: RCH2NH2 + H2O + O2 = RCHO + NH3 + H2O2 Copper-containing amine oxidases are found in bacteria, fungi, plants and animals. In prokaryotes, the enzyme enables various amine substrates to be used as sources of carbon and nitrogen [, ]. In eukaryotes they have a broader range of functions, including cell differentiation and growth, wound healing, detoxification and cell signalling []. The copper amine oxidases occur as mushroom-shaped homodimers of 70-95 kDa, each monomer containing a copper ion and a covalently bound redox cofactor, topaquinone (TPQ). TPQ is formed by post-translational modification of a conserved tyrosine residue. The copper ion is coordinated with three histidine residues and two water molecules in a distorted square pyramidal geometry, and has a dual function in catalysis and TPQ biogenesis. The catalytic domain is the largest of the 3-4 domains found in copper amine oxidases, and consists of a beta sandwich of 18 strands in two sheets. The active site is buried and requires a conformational change to allow the substrate access. The two N-terminal domains share a common structural fold, its core consisting of a five-stranded antiparallel beta sheet twisted around an alpha helix. The D1 domains from the two subunits comprise the stalk, of the mushroom-shaped dimer, and interact with each other but do not pack tightly against each other [, ]. This entry represents one (N2) of the two N-terminal domains (N2/N3) that share a similar structure.; GO: 0005507 copper ion binding, 0008131 primary amine oxidase activity, 0048038 quinone binding, 0009308 amine metabolic process, 0055114 oxidation-reduction process; PDB: 1W2Z_A 1KSI_B 1US1_A 2C11_B 3ALA_E 2Y73_B 2C10_B 1PU4_B 2Y74_B 3SX1_A ....
Probab=99.78 E-value=9.7e-20 Score=157.31 Aligned_cols=85 Identities=33% Similarity=0.494 Sum_probs=70.7
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEccCCCHHHHHhhhhcCCCCCCCcEEEEEEEeCCeeEEEEEeCCC
Q 007236 28 HPLDSLTPSEFSQIRSIVTKAYPESSTHKLTFQYVGLEEPSKQTVISWLKNETTTNPPRQAFVIARIDHQTHELIVDLSL 107 (611)
Q Consensus 28 HPldpLs~~Ei~~a~~il~~~~~~~~~~~~~f~~I~L~eP~K~~vl~~l~~~~~~~p~R~A~vv~~~~~~~~E~vV~L~~ 107 (611)
|||||||++||++|+++|+++... ...+++|.+|+|.||+|++|++| +.+ ++.|+|+|+|+++++++.+|++|||+.
T Consensus 1 HPLdpLt~~Ei~~a~~il~~~~~~-~~~~~~F~~I~L~EP~K~~vl~~-~~~-~~~p~R~A~vv~~~~~~~~e~vVdl~~ 77 (86)
T PF02727_consen 1 HPLDPLTAEEIQAAAAILRDAHPL-AGEKNRFRSIELQEPPKAEVLAF-ERG-GPPPPRRARVVVYDGGQSYEAVVDLTS 77 (86)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHTGT-TTTSEEEEEEEEE---HHHHHHH-HCC-TTTS-EEEEEEEEETSSSSEEEEEEEE
T ss_pred CCCCCCCHHHHHHHHHHHHhcccc-CCCCeEEEEEEeCCCCHHHHhcc-ccC-CcCCCeEEEEEEEECCeeeeEEEECcC
Confidence 999999999999999999998832 12578999999999999999999 544 356899999999998877999999999
Q ss_pred CeEEEEEe
Q 007236 108 QEIASKRI 115 (611)
Q Consensus 108 ~~v~~~~~ 115 (611)
++|++|+.
T Consensus 78 ~~V~~~~~ 85 (86)
T PF02727_consen 78 GKVVSWKE 85 (86)
T ss_dssp EECSCEEE
T ss_pred CccccCcc
Confidence 99988764
No 9
>PF09248 DUF1965: Domain of unknown function (DUF1965); InterPro: IPR015328 Members of this family of fungal domains adopt a structure that consists of an alpha/beta motif. Their exact function has not, as yet, been determined []. ; PDB: 1N9E_A 1RKY_A 1W7C_A 3PGB_A.
Probab=60.42 E-value=7.1 Score=33.25 Aligned_cols=29 Identities=17% Similarity=0.421 Sum_probs=21.3
Q ss_pred CCCccCCcCCcEEEEec-----CccEEEEEECCce
Q 007236 191 VNLFMRPIEGISMTVDL-----DEMKIIGFQDRVT 220 (611)
Q Consensus 191 ~n~Ya~Pl~gl~~~vD~-----~~~kvv~i~d~~~ 220 (611)
|....+|+ ||++.+|+ ++|||++|.+++.
T Consensus 2 d~~tllPl-gl~~~~DiTGrDpS~Wkv~gw~Yn~~ 35 (74)
T PF09248_consen 2 DSETLLPL-GLYFKIDITGRDPSKWKVLGWVYNGQ 35 (74)
T ss_dssp S-GGG-EE-EEEEEEE--SS-GGG-EEEEEEETTE
T ss_pred Cccceece-eeEEEEEeccCChHHcEEEEEEECCE
Confidence 34678999 79999999 6899999997765
No 10
>PF04270 Strep_his_triad: Streptococcal histidine triad protein ; InterPro: IPR006270 This entry represents a repeated sequence region that includes a His-X-X-His-X-His (histidine triad) motif, which is found in family of Streptococcal proteins. Members of the family are suggested to cleave human complement component 3, and family member PhpA has been shown in vaccine studies to be a protective antigen in mice []. ; PDB: 2CS7_C.
Probab=44.06 E-value=13 Score=29.78 Aligned_cols=19 Identities=21% Similarity=0.394 Sum_probs=15.9
Q ss_pred CCCCCCHHHHHHHHHHHHh
Q 007236 29 PLDSLTPSEFSQIRSIVTK 47 (611)
Q Consensus 29 PldpLs~~Ei~~a~~il~~ 47 (611)
|..+||+.|+++|.+.|++
T Consensus 34 ~k~dLs~~E~~aA~~~~~~ 52 (53)
T PF04270_consen 34 PKSDLSASELKAAQAYLAG 52 (53)
T ss_dssp EGGGS-HHHHHHHHHHHH-
T ss_pred chhhCCHHHHHHHHHHHhc
Confidence 7889999999999999876
No 11
>PF02728 Cu_amine_oxidN3: Copper amine oxidase, N3 domain; InterPro: IPR015802 Amine oxidases (AO) are enzymes that catalyse the oxidation of a wide range of biogenic amines including many neurotransmitters, histamine and xenobiotic amines. There are two classes of amine oxidases: flavin-containing (1.4.3.4 from EC) and copper-containing (1.4.3.6 from EC). Copper-containing AO act as a disulphide-linked homodimer. They catalyse the oxidation of primary amines to aldehydes, with the subsequent release of ammonia and hydrogen peroxide, which requires one copper ion per subunit and topaquinone as cofactor []: RCH2NH2 + H2O + O2 = RCHO + NH3 + H2O2 Copper-containing amine oxidases are found in bacteria, fungi, plants and animals. In prokaryotes, the enzyme enables various amine substrates to be used as sources of carbon and nitrogen [, ]. In eukaryotes they have a broader range of functions, including cell differentiation and growth, wound healing, detoxification and cell signalling []. The copper amine oxidases occur as mushroom-shaped homodimers of 70-95 kDa, each monomer containing a copper ion and a covalently bound redox cofactor, topaquinone (TPQ). TPQ is formed by post-translational modification of a conserved tyrosine residue. The copper ion is coordinated with three histidine residues and two water molecules in a distorted square pyramidal geometry, and has a dual function in catalysis and TPQ biogenesis. The catalytic domain is the largest of the 3-4 domains found in copper amine oxidases, and consists of a beta sandwich of 18 strands in two sheets. The active site is buried and requires a conformational change to allow the substrate access. The two N-terminal domains share a common structural fold, its core consisting of a five-stranded antiparallel beta sheet twisted around an alpha helix. The D1 domains from the two subunits comprise the stalk, of the mushroom-shaped dimer, and interact with each other but do not pack tightly against each other [, ]. This entry represents one (N3) of the two N-terminal domains (N2/N3) that share a similar structure.; GO: 0005507 copper ion binding, 0008131 primary amine oxidase activity, 0048038 quinone binding, 0009308 amine metabolic process, 0055114 oxidation-reduction process; PDB: 1TU5_A 2PNC_B 3MPH_B 3HII_B 3HI7_A 3K5T_A 3HIG_A 1SPU_A 2WGQ_A 2WO0_A ....
Probab=35.48 E-value=9.4 Score=33.83 Aligned_cols=80 Identities=18% Similarity=0.216 Sum_probs=40.1
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEccCCCHHHHHhhhhcC-CCC-CCCcEEEEEEEeC--C---e----e-E
Q 007236 32 SLTPSEFSQIRSIVTKAYPESSTHKLTFQYVGLEEPSKQTVISWLKNE-TTT-NPPRQAFVIARID--H---Q----T-H 99 (611)
Q Consensus 32 pLs~~Ei~~a~~il~~~~~~~~~~~~~f~~I~L~eP~K~~vl~~l~~~-~~~-~p~R~A~vv~~~~--~---~----~-~ 99 (611)
|+|.+|+.++.+++++.... .. ......+..+.+-.+..|--+. +.. .-.|.+.+.+|.. + . - .
T Consensus 2 pi~~~E~~~~~~~~~~~p~~---~~-al~~rgi~d~~~v~~~pw~~g~~g~~~~g~Rl~~~~~~~r~~~~n~YahPi~gl 77 (101)
T PF02728_consen 2 PITLEEFAEAEEIVKADPEF---QA-ALKKRGITDMDEVCCDPWSYGPFGEESEGRRLTWVLCFMRDSGNNFYAHPIEGL 77 (101)
T ss_dssp ---HHHHHHHHHHHHTGHHH---HH-HHHHTTCSCGGGEEEEEEE-SSSSSSTTTS-EEEEEEEE-SSTS-GGGSEEECE
T ss_pred CcCHHHHHHHHHHHHHCHHH---HH-HHHHhCCCCcCeEEEeeecccCCCCCCCCceEEEEEEEEEcCCCcccccccCce
Confidence 68999999999999864311 00 0000011122222223332221 111 2468888888762 1 1 1 4
Q ss_pred EEEEeCCCCeEEEEEe
Q 007236 100 ELIVDLSLQEIASKRI 115 (611)
Q Consensus 100 E~vV~L~~~~v~~~~~ 115 (611)
+.+||+.+.+++++..
T Consensus 78 ~~~vD~~~~~vi~i~d 93 (101)
T PF02728_consen 78 EPLVDLDSMEVIRIED 93 (101)
T ss_dssp EEEEETTTTEEEEEEE
T ss_pred EEEEECCCCEEEEEEe
Confidence 7889999999988653
No 12
>PF04667 Endosulfine: cAMP-regulated phosphoprotein/endosulfine conserved region; InterPro: IPR006760 This endosulphine family includes cAMP-regulated phosphoprotein 19 (ARPP-19), alpha endosulphine and protein Igo1. No function has yet been assigned to ARPP-19 []. Endosulphine is the endogenous ligand for the ATP-dependent potassium channels which occupy a key position in the control of insulin release from the pancreatic beta cell by coupling cell polarity to metabolism []. Igo1 is required for initiation of G0 program. In the absence of stimulatory signals, cells may enter into a reversible quiescence (or G0) state that is typically characterised by low metabolic activity, including low rates of protein synthesis and transcription. Igo proteins associate with the mRNA decapping activator Dhh1, sheltering newly expressed mRNAs from degradation via the 5'-3' mRNA decay pathway, and thereby enabling their proper translation during initiation of the G0 program [].
Probab=22.74 E-value=16 Score=31.91 Aligned_cols=15 Identities=33% Similarity=0.875 Sum_probs=12.9
Q ss_pred cceeecCCCCCCccc
Q 007236 322 RTFFDAGEYGYGLCS 336 (611)
Q Consensus 322 k~~~D~geyG~G~~a 336 (611)
+.|||+|||-|+...
T Consensus 35 rKYFDSgDyam~Ka~ 49 (86)
T PF04667_consen 35 RKYFDSGDYAMAKAG 49 (86)
T ss_pred ccccchHHHHHHHhh
Confidence 679999999998854
Done!