BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007237
(611 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 88/200 (44%), Gaps = 14/200 (7%)
Query: 77 LKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKN-LSSLPVAISS 135
+ L +FP + LQ +D + ELP + + GL LTL +N L +LP +I+S
Sbjct: 91 VPLPQFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTL--ARNPLRALPASIAS 148
Query: 136 FQCLRNLKLSGCSKLKKFPQIVTTME---------DLSELNLDGTSITEVPSSIXXXXXX 186
LR L + C +L + P+ + + + +L L L+ T I +P+SI
Sbjct: 149 LNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNL 208
Query: 187 XXXXXXDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISE-TAVR 245
+ A P +I+ L L+ L+L GC L N P G L+ L + + + +
Sbjct: 209 KSLKIRNSPLSALGP-AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL 267
Query: 246 RPPSSVFLMKNLRTLSFSGC 265
P + + L L GC
Sbjct: 268 TLPLDIHRLTQLEKLDLRGC 287
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/230 (26%), Positives = 94/230 (40%), Gaps = 38/230 (16%)
Query: 16 KVMKLSHSENL-IKTPDFTEAPNLEELY--LEGCTKLRKVHPSLLLHNKLIFVESLKILI 72
+ +LSH ++ I E P+ + + LE T R +P L + + L+ L
Sbjct: 99 QAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLAR--NPLRALPASIASLNRLRELS 156
Query: 73 LSGCLKLRKFPHVVGSMEC---------LQELLLDGTDIKELPLSIEHLFGLVQLTLNDC 123
+ C +L + P + S + LQ L L+ T I+ LP SI +L L L + +
Sbjct: 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNS 216
Query: 124 KNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIXXX 183
LS+L AI L L L GC+ L+ +P I L L L
Sbjct: 217 P-LSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILK-------------- 261
Query: 184 XXXXXXXXXDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVES 233
DC N +P I+ L L+ L+L GC L +P + Q+ +
Sbjct: 262 ---------DCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA 302
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 98/241 (40%), Gaps = 41/241 (17%)
Query: 150 LKKFPQIVTTMEDLSELNLDGTSITEVPSSIXXXXXXXXXXXXDCKNFAR-VPSSINGLK 208
L +FP + L +D + E+P + +N R +P+SI L
Sbjct: 93 LPQFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTL--ARNPLRALPASIASLN 150
Query: 209 SLKTLNLSGCCKLENVPDTLGQVES---------LEELDISETAVRRPPSSVFLMKNLRT 259
L+ L++ C +L +P+ L ++ L+ L + T +R P+S+ ++NL++
Sbjct: 151 RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKS 210
Query: 260 LSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIP 319
L P + +G P++ L L +LDL C P
Sbjct: 211 LKIRNS-------------PLSALG----------PAIHHLPKLEELDLRGCTALRN-YP 246
Query: 320 SDIGNLHSLNELYLSK-NNFVTLPASINSLLNLKELEMEDCKRLQFLP----QLPPNIIF 374
G L L L +N +TLP I+ L L++L++ C L LP QLP N I
Sbjct: 247 PIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCII 306
Query: 375 V 375
+
Sbjct: 307 L 307
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 75/174 (43%), Gaps = 22/174 (12%)
Query: 218 CCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLH 277
L +PDT Q LE L ++ +R P+S+ + LR LS C P
Sbjct: 113 AAGLXELPDTXQQFAGLETLTLARNPLRALPASIASLNRLRELSIRAC---PELTE---- 165
Query: 278 LPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNN 337
LP L + GL +L L L G+ ++P+ I NL +L L + +
Sbjct: 166 LPEPLASTDAS------GEHQGLVNLQSLRLEWTGI--RSLPASIANLQNLKSLKIRNSP 217
Query: 338 FVTLPASINSLLNLKELEMEDCKRLQFLPQL-----PPNIIFVKVNGCSSLVTL 386
L +I+ L L+EL++ C L+ P + P + +K CS+L+TL
Sbjct: 218 LSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILK--DCSNLLTL 269
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 51/127 (40%), Gaps = 31/127 (24%)
Query: 11 HLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKI 70
+L LK +K+ +S P P LEEL L GCT
Sbjct: 204 NLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCT----------------------- 240
Query: 71 LILSGCLKLRKFPHVVGSMECLQELLL-DGTDIKELPLSIEHLFGLVQLTLNDCKNLSSL 129
LR +P + G L+ L+L D +++ LPL I L L +L L C NLS L
Sbjct: 241 -------ALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL 293
Query: 130 PVAISSF 136
P I+
Sbjct: 294 PSLIAQL 300
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 71/150 (47%), Gaps = 25/150 (16%)
Query: 206 GLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPS-SVFL-MKNLRTLSFS 263
G SLK L+LS + + LG +E LE LD + +++ SVFL ++NL L S
Sbjct: 371 GTTSLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 429
Query: 264 GCNGPPSSASWHLHLPFN--LMGKSSCLVALM---------LPSL-SGLRSLTKLDLSDC 311
H + FN G SS V M LP + + LR+LT LDLS C
Sbjct: 430 HT---------HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 480
Query: 312 GLGEGAIPSDIGNLHSLNELYLSKNNFVTL 341
L E P+ +L SL L +S NNF +L
Sbjct: 481 QL-EQLSPTAFNSLSSLQVLNMSHNNFFSL 509
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 71/150 (47%), Gaps = 25/150 (16%)
Query: 206 GLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPS-SVFL-MKNLRTLSFS 263
G SLK L+LS + + LG +E LE LD + +++ SVFL ++NL L S
Sbjct: 395 GTISLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 453
Query: 264 GCNGPPSSASWHLHLPFN--LMGKSSCLVALM---------LPSL-SGLRSLTKLDLSDC 311
H + FN G SS V M LP + + LR+LT LDLS C
Sbjct: 454 HT---------HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 504
Query: 312 GLGEGAIPSDIGNLHSLNELYLSKNNFVTL 341
L E P+ +L SL L +S NNF +L
Sbjct: 505 QL-EQLSPTAFNSLSSLQVLNMSHNNFFSL 533
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 71/150 (47%), Gaps = 25/150 (16%)
Query: 206 GLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPS-SVFL-MKNLRTLSFS 263
G SLK L+LS + + LG +E LE LD + +++ SVFL ++NL L S
Sbjct: 76 GTTSLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 134
Query: 264 GCNGPPSSASWHLHLPFN--LMGKSSCLVALM---------LPSL-SGLRSLTKLDLSDC 311
H + FN G SS V M LP + + LR+LT LDLS C
Sbjct: 135 ---------HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 185
Query: 312 GLGEGAIPSDIGNLHSLNELYLSKNNFVTL 341
L E P+ +L SL L +S NNF +L
Sbjct: 186 QL-EQLSPTAFNSLSSLQVLNMSHNNFFSL 214
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 65/151 (43%), Gaps = 12/151 (7%)
Query: 102 IKELPLSIEHLFGLVQLTLNDCKNLSSL-----------PVAISSFQCLRNLKLSGCSKL 150
++EL L G + TL++C L SL P ++ S LR+LKL
Sbjct: 393 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 452
Query: 151 KKFPQIVTTMEDLSELNLDGTSIT-EVPSSIXXXXXXXXXXXXDCKNFARVPSSINGLKS 209
+ PQ + ++ L L LD +T E+PS + + + +P I L++
Sbjct: 453 GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN 512
Query: 210 LKTLNLSGCCKLENVPDTLGQVESLEELDIS 240
L L LS N+P LG SL LD++
Sbjct: 513 LAILKLSNNSFSGNIPAELGDCRSLIWLDLN 543
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 316 GAIPSDIGNLHSLNELYLSKNNF-VTLPASINSLLNLKELEMEDCKRLQFLPQL 368
G+IP ++G+L LN L LS N +P ++++L L E+++ + +P++
Sbjct: 667 GSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 720
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 65/151 (43%), Gaps = 12/151 (7%)
Query: 102 IKELPLSIEHLFGLVQLTLNDCKNLSSL-----------PVAISSFQCLRNLKLSGCSKL 150
++EL L G + TL++C L SL P ++ S LR+LKL
Sbjct: 396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 455
Query: 151 KKFPQIVTTMEDLSELNLDGTSIT-EVPSSIXXXXXXXXXXXXDCKNFARVPSSINGLKS 209
+ PQ + ++ L L LD +T E+PS + + + +P I L++
Sbjct: 456 GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN 515
Query: 210 LKTLNLSGCCKLENVPDTLGQVESLEELDIS 240
L L LS N+P LG SL LD++
Sbjct: 516 LAILKLSNNSFSGNIPAELGDCRSLIWLDLN 546
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 316 GAIPSDIGNLHSLNELYLSKNNF-VTLPASINSLLNLKELEMEDCKRLQFLPQL 368
G+IP ++G+L LN L LS N +P ++++L L E+++ + +P++
Sbjct: 670 GSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 85/183 (46%), Gaps = 32/183 (17%)
Query: 206 GLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPS-SVFL-MKNLRTLSFS 263
G SLK L+LS + + LG +E LE LD + +++ SVFL ++NL L S
Sbjct: 371 GTTSLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 429
Query: 264 GCNGPPSSASWHLHLPFN--LMGKSSCLVALM---------LPSL-SGLRSLTKLDLSDC 311
H + FN G SS V M LP + + LR+LT LDLS C
Sbjct: 430 HT---------HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 480
Query: 312 GLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASI-NSLLNLKELEME------DCKRLQF 364
L E P+ +L SL L ++ N ++P I + L +L+++ + C R+ +
Sbjct: 481 QL-EQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 539
Query: 365 LPQ 367
L +
Sbjct: 540 LSR 542
>pdb|3IM9|A Chain A, Crystal Structure Of Mcat From Staphylococcus Aureus
Length = 316
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 17/87 (19%)
Query: 20 LSHSENLIKT-----PDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILS 74
L+HS L+ PDFT +L E + SL+ + L F +++KI+
Sbjct: 75 LTHSSALLAALKNLNPDFTMGHSLGE------------YSSLVAADVLSFEDAVKIVRKR 122
Query: 75 GCLKLRKFPHVVGSMECLQELLLDGTD 101
G L + FP VGSM + L D D
Sbjct: 123 GQLMAQAFPTGVGSMAAVLGLDFDKVD 149
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 32.3 bits (72), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Query: 99 GTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVT 158
G + E+P ++ ++L N K + P A S ++ LR + LS + P
Sbjct: 20 GKGLTEIPTNLPETITEIRLEQNTIKVIP--PGAFSPYKKLRRIDLSNNQISELAPDAFQ 77
Query: 159 TMEDLSELNLDGTSITEVPSSI 180
+ L+ L L G ITE+P S+
Sbjct: 78 GLRSLNSLVLYGNKITELPKSL 99
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 32.3 bits (72), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Query: 99 GTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVT 158
G + E+P ++ ++L N K + P A S ++ LR + LS + P
Sbjct: 20 GKGLTEIPTNLPETITEIRLEQNTIKVIP--PGAFSPYKKLRRIDLSNNQISELAPDAFQ 77
Query: 159 TMEDLSELNLDGTSITEVPSSI 180
+ L+ L L G ITE+P S+
Sbjct: 78 GLRSLNSLVLYGNKITELPKSL 99
>pdb|2P1M|B Chain B, Tir1-ask1 Complex Structure
pdb|2P1N|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1N|E Chain E, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1O|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1P|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1Q|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|3C6N|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
pdb|3C6O|B Chain B, Small Molecule Agonists And Antagonists Of F-Box
Protein-Substrate Interactions In Auxin Perception And
Signaling
pdb|3C6P|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
Length = 594
Score = 32.0 bits (71), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 297 LSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLS 334
LSG SL KL++ DC G+ A+ ++ L ++ L++S
Sbjct: 477 LSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMS 514
>pdb|2ZU2|A Chain A, Complex Structure Of Cov 229e 3cl Protease With Epdtc
pdb|2ZU2|B Chain B, Complex Structure Of Cov 229e 3cl Protease With Epdtc
Length = 302
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 479 HVPRHSTRIKKRRHSYELQCCMDGSDRGFF 508
H PRHS R K + + C DG +G F
Sbjct: 96 HTPRHSFRTLKSGEGFNILACYDGCAQGVF 125
>pdb|1P9S|A Chain A, Coronavirus Main Proteinase (3clpro) Structure: Basis For
Design Of Anti-Sars Drugs
pdb|1P9S|B Chain B, Coronavirus Main Proteinase (3clpro) Structure: Basis For
Design Of Anti-Sars Drugs
Length = 300
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 479 HVPRHSTRIKKRRHSYELQCCMDGSDRGFF 508
H PRHS R K + + C DG +G F
Sbjct: 96 HTPRHSFRTLKSGEGFNILACYDGCAQGVF 125
>pdb|3VDA|A Chain A, E. Coli (Lacz) Beta-Galactosidase (N460t)
pdb|3VDA|B Chain B, E. Coli (Lacz) Beta-Galactosidase (N460t)
pdb|3VDA|C Chain C, E. Coli (Lacz) Beta-Galactosidase (N460t)
pdb|3VDA|D Chain D, E. Coli (Lacz) Beta-Galactosidase (N460t)
pdb|3VDB|A Chain A, E. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
Galactonolactone
pdb|3VDB|B Chain B, E. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
Galactonolactone
pdb|3VDB|C Chain C, E. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
Galactonolactone
pdb|3VDB|D Chain D, E. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
Galactonolactone
pdb|3VDC|A Chain A, E. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
Iptg
pdb|3VDC|B Chain B, E. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
Iptg
pdb|3VDC|C Chain C, E. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
Iptg
pdb|3VDC|D Chain D, E. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
Iptg
Length = 1052
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 5/50 (10%)
Query: 320 SDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDC-----KRLQF 364
S+ G++ + + L++N VTLPA+ +++ +L EM+ C KR QF
Sbjct: 738 SEAGHISAWQQWRLAENLSVTLPAASHAIPHLTTSEMDFCIELGNKRWQF 787
>pdb|3VD5|A Chain A, E. Coli (Lacz) Beta-Galactosidase (N460s)
pdb|3VD5|C Chain C, E. Coli (Lacz) Beta-Galactosidase (N460s)
pdb|3VD5|D Chain D, E. Coli (Lacz) Beta-Galactosidase (N460s)
pdb|3VD5|B Chain B, E. Coli (Lacz) Beta-Galactosidase (N460s)
pdb|3VD7|A Chain A, E. Coli (Lacz) Beta-Galactosidase (N460s) In Complex With
Galactotetrazole
pdb|3VD7|B Chain B, E. Coli (Lacz) Beta-Galactosidase (N460s) In Complex With
Galactotetrazole
pdb|3VD7|C Chain C, E. Coli (Lacz) Beta-Galactosidase (N460s) In Complex With
Galactotetrazole
pdb|3VD7|D Chain D, E. Coli (Lacz) Beta-Galactosidase (N460s) In Complex With
Galactotetrazole
pdb|3VD9|A Chain A, E. Coli (Lacz) Beta-Galactosidase (N460s) In Complex With
Iptg
pdb|3VD9|B Chain B, E. Coli (Lacz) Beta-Galactosidase (N460s) In Complex With
Iptg
pdb|3VD9|C Chain C, E. Coli (Lacz) Beta-Galactosidase (N460s) In Complex With
Iptg
pdb|3VD9|D Chain D, E. Coli (Lacz) Beta-Galactosidase (N460s) In Complex With
Iptg
Length = 1052
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 5/50 (10%)
Query: 320 SDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDC-----KRLQF 364
S+ G++ + + L++N VTLPA+ +++ +L EM+ C KR QF
Sbjct: 738 SEAGHISAWQQWRLAENLSVTLPAASHAIPHLTTSEMDFCIELGNKRWQF 787
>pdb|3VD3|A Chain A, E. Coli (Lacz) Beta-Galactosidase (N460d)
pdb|3VD3|B Chain B, E. Coli (Lacz) Beta-Galactosidase (N460d)
pdb|3VD3|C Chain C, E. Coli (Lacz) Beta-Galactosidase (N460d)
pdb|3VD3|D Chain D, E. Coli (Lacz) Beta-Galactosidase (N460d)
pdb|3VD4|A Chain A, E. Coli (Lacz) Beta-Galactosidase (N460d) In Complex With
Iptg
pdb|3VD4|B Chain B, E. Coli (Lacz) Beta-Galactosidase (N460d) In Complex With
Iptg
pdb|3VD4|C Chain C, E. Coli (Lacz) Beta-Galactosidase (N460d) In Complex With
Iptg
pdb|3VD4|D Chain D, E. Coli (Lacz) Beta-Galactosidase (N460d) In Complex With
Iptg
Length = 1052
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 5/50 (10%)
Query: 320 SDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDC-----KRLQF 364
S+ G++ + + L++N VTLPA+ +++ +L EM+ C KR QF
Sbjct: 738 SEAGHISAWQQWRLAENLSVTLPAASHAIPHLTTSEMDFCIELGNKRWQF 787
>pdb|3T0A|A Chain A, E. Coli (Lacz) Beta-Galactosidase (S796t)
pdb|3T0A|B Chain B, E. Coli (Lacz) Beta-Galactosidase (S796t)
pdb|3T0A|C Chain C, E. Coli (Lacz) Beta-Galactosidase (S796t)
pdb|3T0A|D Chain D, E. Coli (Lacz) Beta-Galactosidase (S796t)
pdb|3T0B|A Chain A, E. Coli (Lacz) Beta-Galactosidase (S796t) Iptg Complex
pdb|3T0B|B Chain B, E. Coli (Lacz) Beta-Galactosidase (S796t) Iptg Complex
pdb|3T0B|C Chain C, E. Coli (Lacz) Beta-Galactosidase (S796t) Iptg Complex
pdb|3T0B|D Chain D, E. Coli (Lacz) Beta-Galactosidase (S796t) Iptg Complex
pdb|3T0D|A Chain A, E.Coli (Lacz) Beta-Galactosidase (S796t) In Complex With
Galactonolactone
pdb|3T0D|B Chain B, E.Coli (Lacz) Beta-Galactosidase (S796t) In Complex With
Galactonolactone
pdb|3T0D|C Chain C, E.Coli (Lacz) Beta-Galactosidase (S796t) In Complex With
Galactonolactone
pdb|3T0D|D Chain D, E.Coli (Lacz) Beta-Galactosidase (S796t) In Complex With
Galactonolactone
Length = 1052
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 5/50 (10%)
Query: 320 SDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDC-----KRLQF 364
S+ G++ + + L++N VTLPA+ +++ +L EM+ C KR QF
Sbjct: 738 SEAGHISAWQQWRLAENLSVTLPAASHAIPHLTTSEMDFCIELGNKRWQF 787
>pdb|3SEP|A Chain A, E. Coli (Lacz) Beta-Galactosidase (S796a)
pdb|3SEP|B Chain B, E. Coli (Lacz) Beta-Galactosidase (S796a)
pdb|3SEP|C Chain C, E. Coli (Lacz) Beta-Galactosidase (S796a)
pdb|3SEP|D Chain D, E. Coli (Lacz) Beta-Galactosidase (S796a)
pdb|3T08|A Chain A, E. Coli (Lacz) Beta-Galactosidase (S796a) Iptg Complex
pdb|3T08|B Chain B, E. Coli (Lacz) Beta-Galactosidase (S796a) Iptg Complex
pdb|3T08|C Chain C, E. Coli (Lacz) Beta-Galactosidase (S796a) Iptg Complex
pdb|3T08|D Chain D, E. Coli (Lacz) Beta-Galactosidase (S796a) Iptg Complex
pdb|3T09|A Chain A, E. Coli (Lacz) Beta-Galactosidase (S796a) Galactonolactone
Complex
pdb|3T09|B Chain B, E. Coli (Lacz) Beta-Galactosidase (S796a) Galactonolactone
Complex
pdb|3T09|C Chain C, E. Coli (Lacz) Beta-Galactosidase (S796a) Galactonolactone
Complex
pdb|3T09|D Chain D, E. Coli (Lacz) Beta-Galactosidase (S796a) Galactonolactone
Complex
Length = 1052
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 5/50 (10%)
Query: 320 SDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDC-----KRLQF 364
S+ G++ + + L++N VTLPA+ +++ +L EM+ C KR QF
Sbjct: 738 SEAGHISAWQQWRLAENLSVTLPAASHAIPHLTTSEMDFCIELGNKRWQF 787
>pdb|3MUZ|1 Chain 1, E.Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
Iptg
pdb|3MUZ|2 Chain 2, E.Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
Iptg
pdb|3MUZ|3 Chain 3, E.Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
Iptg
pdb|3MUZ|4 Chain 4, E.Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
Iptg
pdb|3MV0|1 Chain 1, E. Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
D- Galctopyranosyl-1-One
pdb|3MV0|2 Chain 2, E. Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
D- Galctopyranosyl-1-One
pdb|3MV0|3 Chain 3, E. Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
D- Galctopyranosyl-1-One
pdb|3MV0|4 Chain 4, E. Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
D- Galctopyranosyl-1-One
pdb|3MV1|1 Chain 1, E.Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
Guanidinium
pdb|3MV1|2 Chain 2, E.Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
Guanidinium
pdb|3MV1|3 Chain 3, E.Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
Guanidinium
pdb|3MV1|4 Chain 4, E.Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
Guanidinium
Length = 1052
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 5/50 (10%)
Query: 320 SDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDC-----KRLQF 364
S+ G++ + + L++N VTLPA+ +++ +L EM+ C KR QF
Sbjct: 738 SEAGHISAWQQWRLAENLSVTLPAASHAIPHLTTSEMDFCIELGNKRWQF 787
>pdb|3I3B|A Chain A, E.Coli (Lacz) Beta-Galactosidase (M542a) In Complex With
D- Galactopyranosyl-1-On
pdb|3I3B|B Chain B, E.Coli (Lacz) Beta-Galactosidase (M542a) In Complex With
D- Galactopyranosyl-1-On
pdb|3I3B|C Chain C, E.Coli (Lacz) Beta-Galactosidase (M542a) In Complex With
D- Galactopyranosyl-1-On
pdb|3I3B|D Chain D, E.Coli (Lacz) Beta-Galactosidase (M542a) In Complex With
D- Galactopyranosyl-1-On
pdb|3I3D|A Chain A, E. Coli (Lacz) Beta-Galactosidase (M542a) In Complex With
Iptg
pdb|3I3D|B Chain B, E. Coli (Lacz) Beta-Galactosidase (M542a) In Complex With
Iptg
pdb|3I3D|C Chain C, E. Coli (Lacz) Beta-Galactosidase (M542a) In Complex With
Iptg
pdb|3I3D|D Chain D, E. Coli (Lacz) Beta-Galactosidase (M542a) In Complex With
Iptg
pdb|3I3E|A Chain A, E. Coli (Lacz) Beta-Galactosidase (M542a)
pdb|3I3E|B Chain B, E. Coli (Lacz) Beta-Galactosidase (M542a)
pdb|3I3E|C Chain C, E. Coli (Lacz) Beta-Galactosidase (M542a)
pdb|3I3E|D Chain D, E. Coli (Lacz) Beta-Galactosidase (M542a)
Length = 1023
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 5/50 (10%)
Query: 320 SDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDC-----KRLQF 364
S+ G++ + + L++N VTLPA+ +++ +L EM+ C KR QF
Sbjct: 709 SEAGHISAWQQWRLAENLSVTLPAASHAIPHLTTSEMDFCIELGNKRWQF 758
>pdb|1JZ8|A Chain A, E. Coli (lacz) Beta-galactosidase (e537q) In Complex With
Allolactose
pdb|1JZ8|B Chain B, E. Coli (lacz) Beta-galactosidase (e537q) In Complex With
Allolactose
pdb|1JZ8|C Chain C, E. Coli (lacz) Beta-galactosidase (e537q) In Complex With
Allolactose
pdb|1JZ8|D Chain D, E. Coli (lacz) Beta-galactosidase (e537q) In Complex With
Allolactose
pdb|1JYW|A Chain A, E. Coli (lacz) Beta-galactosidase (e537q) In Complex With
Pnpg
pdb|1JYW|B Chain B, E. Coli (lacz) Beta-galactosidase (e537q) In Complex With
Pnpg
pdb|1JYW|C Chain C, E. Coli (lacz) Beta-galactosidase (e537q) In Complex With
Pnpg
pdb|1JYW|D Chain D, E. Coli (lacz) Beta-galactosidase (e537q) In Complex With
Pnpg
pdb|1JYV|A Chain A, E. Coli (Lacz) Beta-Galactosidase (E537q) In Complex With
Onpg
pdb|1JYV|B Chain B, E. Coli (Lacz) Beta-Galactosidase (E537q) In Complex With
Onpg
pdb|1JYV|C Chain C, E. Coli (Lacz) Beta-Galactosidase (E537q) In Complex With
Onpg
pdb|1JYV|D Chain D, E. Coli (Lacz) Beta-Galactosidase (E537q) In Complex With
Onpg
pdb|1JYN|A Chain A, E. Coli (Lacz) Beta-Galactosidase (E537q) In Complex With
Lactose
pdb|1JYN|B Chain B, E. Coli (Lacz) Beta-Galactosidase (E537q) In Complex With
Lactose
pdb|1JYN|C Chain C, E. Coli (Lacz) Beta-Galactosidase (E537q) In Complex With
Lactose
pdb|1JYN|D Chain D, E. Coli (Lacz) Beta-Galactosidase (E537q) In Complex With
Lactose
Length = 1023
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 5/50 (10%)
Query: 320 SDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDC-----KRLQF 364
S+ G++ + + L++N VTLPA+ +++ +L EM+ C KR QF
Sbjct: 709 SEAGHISAWQQWRLAENLSVTLPAASHAIPHLTTSEMDFCIELGNKRWQF 758
>pdb|3IAP|A Chain A, E. Coli (Lacz) Beta-Galactosidase (E416q)
pdb|3IAP|B Chain B, E. Coli (Lacz) Beta-Galactosidase (E416q)
pdb|3IAP|C Chain C, E. Coli (Lacz) Beta-Galactosidase (E416q)
pdb|3IAP|D Chain D, E. Coli (Lacz) Beta-Galactosidase (E416q)
Length = 1023
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 5/50 (10%)
Query: 320 SDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDC-----KRLQF 364
S+ G++ + + L++N VTLPA+ +++ +L EM+ C KR QF
Sbjct: 709 SEAGHISAWQQWRLAENLSVTLPAASHAIPHLTTSEMDFCIELGNKRWQF 758
>pdb|1DP0|A Chain A, E. Coli Beta-Galactosidase At 1.7 Angstrom
pdb|1DP0|B Chain B, E. Coli Beta-Galactosidase At 1.7 Angstrom
pdb|1DP0|C Chain C, E. Coli Beta-Galactosidase At 1.7 Angstrom
pdb|1DP0|D Chain D, E. Coli Beta-Galactosidase At 1.7 Angstrom
pdb|1JZ6|A Chain A, E. Coli (Lacz) Beta-Galactosidase In Complex With Galacto-
Tetrazole
pdb|1JZ6|B Chain B, E. Coli (Lacz) Beta-Galactosidase In Complex With Galacto-
Tetrazole
pdb|1JZ6|C Chain C, E. Coli (Lacz) Beta-Galactosidase In Complex With Galacto-
Tetrazole
pdb|1JZ6|D Chain D, E. Coli (Lacz) Beta-Galactosidase In Complex With Galacto-
Tetrazole
pdb|1JZ5|A Chain A, E. Coli (lacz) Beta-galactosidase In Complex With
D-galctopyranosyl-1- On
pdb|1JZ5|B Chain B, E. Coli (lacz) Beta-galactosidase In Complex With
D-galctopyranosyl-1- On
pdb|1JZ5|C Chain C, E. Coli (lacz) Beta-galactosidase In Complex With
D-galctopyranosyl-1- On
pdb|1JZ5|D Chain D, E. Coli (lacz) Beta-galactosidase In Complex With
D-galctopyranosyl-1- On
pdb|1JZ4|A Chain A, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-Deoxy-
Galactosyl-Enzyme Intermediate (Low Bis-Tris)
pdb|1JZ4|B Chain B, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-Deoxy-
Galactosyl-Enzyme Intermediate (Low Bis-Tris)
pdb|1JZ4|C Chain C, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-Deoxy-
Galactosyl-Enzyme Intermediate (Low Bis-Tris)
pdb|1JZ4|D Chain D, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-Deoxy-
Galactosyl-Enzyme Intermediate (Low Bis-Tris)
pdb|1JZ3|A Chain A, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-Deoxy-
Galactosyl Enzyme Intermediate
pdb|1JZ3|B Chain B, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-Deoxy-
Galactosyl Enzyme Intermediate
pdb|1JZ3|C Chain C, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-Deoxy-
Galactosyl Enzyme Intermediate
pdb|1JZ3|D Chain D, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-Deoxy-
Galactosyl Enzyme Intermediate
pdb|1JYX|A Chain A, E. Coli (Lacz) Beta-Galactosidase In Complex With Iptg
pdb|1JYX|B Chain B, E. Coli (Lacz) Beta-Galactosidase In Complex With Iptg
pdb|1JYX|C Chain C, E. Coli (Lacz) Beta-Galactosidase In Complex With Iptg
pdb|1JYX|D Chain D, E. Coli (Lacz) Beta-Galactosidase In Complex With Iptg
pdb|1HN1|A Chain A, E. Coli (Lac Z) Beta-Galactosidase (Orthorhombic)
pdb|1HN1|B Chain B, E. Coli (Lac Z) Beta-Galactosidase (Orthorhombic)
pdb|1HN1|C Chain C, E. Coli (Lac Z) Beta-Galactosidase (Orthorhombic)
pdb|1HN1|D Chain D, E. Coli (Lac Z) Beta-Galactosidase (Orthorhombic)
Length = 1023
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 5/50 (10%)
Query: 320 SDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDC-----KRLQF 364
S+ G++ + + L++N VTLPA+ +++ +L EM+ C KR QF
Sbjct: 709 SEAGHISAWQQWRLAENLSVTLPAASHAIPHLTTSEMDFCIELGNKRWQF 758
>pdb|3T2O|A Chain A, E. Coli (Lacz) Beta-Galactosidase (S796d)
pdb|3T2O|B Chain B, E. Coli (Lacz) Beta-Galactosidase (S796d)
pdb|3T2O|C Chain C, E. Coli (Lacz) Beta-Galactosidase (S796d)
pdb|3T2O|D Chain D, E. Coli (Lacz) Beta-Galactosidase (S796d)
pdb|3T2P|A Chain A, E. Coli (Lacz) Beta-Galactosidase (S796d) In Complex With
Iptg
pdb|3T2P|B Chain B, E. Coli (Lacz) Beta-Galactosidase (S796d) In Complex With
Iptg
pdb|3T2P|C Chain C, E. Coli (Lacz) Beta-Galactosidase (S796d) In Complex With
Iptg
pdb|3T2P|D Chain D, E. Coli (Lacz) Beta-Galactosidase (S796d) In Complex With
Iptg
pdb|3T2Q|A Chain A, E. Coli (Lacz) Beta-Galactosidase (S796d) In Complex With
Galactonolactone
pdb|3T2Q|B Chain B, E. Coli (Lacz) Beta-Galactosidase (S796d) In Complex With
Galactonolactone
pdb|3T2Q|C Chain C, E. Coli (Lacz) Beta-Galactosidase (S796d) In Complex With
Galactonolactone
pdb|3T2Q|D Chain D, E. Coli (Lacz) Beta-Galactosidase (S796d) In Complex With
Galactonolactone
Length = 1052
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 5/50 (10%)
Query: 320 SDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDC-----KRLQF 364
S+ G++ + + L++N VTLPA+ +++ +L EM+ C KR QF
Sbjct: 738 SEAGHISAWQQWRLAENLSVTLPAASHAIPHLTTSEMDFCIELGNKRWQF 787
>pdb|3IAQ|A Chain A, E. Coli (Lacz) Beta-Galactosidase (E416v)
pdb|3IAQ|B Chain B, E. Coli (Lacz) Beta-Galactosidase (E416v)
pdb|3IAQ|C Chain C, E. Coli (Lacz) Beta-Galactosidase (E416v)
pdb|3IAQ|D Chain D, E. Coli (Lacz) Beta-Galactosidase (E416v)
Length = 1023
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 5/50 (10%)
Query: 320 SDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDC-----KRLQF 364
S+ G++ + + L++N VTLPA+ +++ +L EM+ C KR QF
Sbjct: 709 SEAGHISAWQQWRLAENLSVTLPAASHAIPHLTTSEMDFCIELGNKRWQF 758
>pdb|3CZJ|A Chain A, "e. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
D- Galctopyranosyl-1-One"
pdb|3CZJ|B Chain B, "e. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
D- Galctopyranosyl-1-One"
pdb|3CZJ|C Chain C, "e. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
D- Galctopyranosyl-1-One"
pdb|3CZJ|D Chain D, "e. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
D- Galctopyranosyl-1-One"
Length = 1023
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 5/50 (10%)
Query: 320 SDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDC-----KRLQF 364
S+ G++ + + L++N VTLPA+ +++ +L EM+ C KR QF
Sbjct: 709 SEAGHISAWQQWRLAENLSVTLPAASHAIPHLTTSEMDFCIELGNKRWQF 758
>pdb|1BGM|I Chain I, Beta-Galactosidase (Chains I-P)
pdb|1BGM|J Chain J, Beta-Galactosidase (Chains I-P)
pdb|1BGM|K Chain K, Beta-Galactosidase (Chains I-P)
pdb|1BGM|L Chain L, Beta-Galactosidase (Chains I-P)
pdb|1BGM|M Chain M, Beta-Galactosidase (Chains I-P)
pdb|1BGM|N Chain N, Beta-Galactosidase (Chains I-P)
pdb|1BGM|O Chain O, Beta-Galactosidase (Chains I-P)
pdb|1BGM|P Chain P, Beta-Galactosidase (Chains I-P)
pdb|1BGL|A Chain A, Beta-Galactosidase (Chains A-H)
pdb|1BGL|B Chain B, Beta-Galactosidase (Chains A-H)
pdb|1BGL|C Chain C, Beta-Galactosidase (Chains A-H)
pdb|1BGL|D Chain D, Beta-Galactosidase (Chains A-H)
pdb|1BGL|E Chain E, Beta-Galactosidase (Chains A-H)
pdb|1BGL|F Chain F, Beta-Galactosidase (Chains A-H)
pdb|1BGL|G Chain G, Beta-Galactosidase (Chains A-H)
pdb|1BGL|H Chain H, Beta-Galactosidase (Chains A-H)
pdb|1JZ2|A Chain A, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate (Orthorhombic)
pdb|1JZ2|B Chain B, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate (Orthorhombic)
pdb|1JZ2|C Chain C, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate (Orthorhombic)
pdb|1JZ2|D Chain D, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate (Orthorhombic)
Length = 1023
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 5/50 (10%)
Query: 320 SDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDC-----KRLQF 364
S+ G++ + + L++N VTLPA+ +++ +L EM+ C KR QF
Sbjct: 709 SEAGHISAWQQWRLAENLSVTLPAASHAIPHLTTSEMDFCIELGNKRWQF 758
>pdb|3DYO|A Chain A, E. Coli (Lacz) Beta-Galactosidase (H418n) In Complex With
Iptg
pdb|3DYO|B Chain B, E. Coli (Lacz) Beta-Galactosidase (H418n) In Complex With
Iptg
pdb|3DYO|C Chain C, E. Coli (Lacz) Beta-Galactosidase (H418n) In Complex With
Iptg
pdb|3DYO|D Chain D, E. Coli (Lacz) Beta-Galactosidase (H418n) In Complex With
Iptg
pdb|3DYP|A Chain A, E. Coli (Lacz) Beta-Galactosidase (H418n)
pdb|3DYP|B Chain B, E. Coli (Lacz) Beta-Galactosidase (H418n)
pdb|3DYP|C Chain C, E. Coli (Lacz) Beta-Galactosidase (H418n)
pdb|3DYP|D Chain D, E. Coli (Lacz) Beta-Galactosidase (H418n)
Length = 1023
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 5/50 (10%)
Query: 320 SDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDC-----KRLQF 364
S+ G++ + + L++N VTLPA+ +++ +L EM+ C KR QF
Sbjct: 709 SEAGHISAWQQWRLAENLSVTLPAASHAIPHLTTSEMDFCIELGNKRWQF 758
>pdb|1JZ7|A Chain A, E. Coli (Lacz) Beta-Galactosidase In Complex With
Galactose
pdb|1JZ7|B Chain B, E. Coli (Lacz) Beta-Galactosidase In Complex With
Galactose
pdb|1JZ7|C Chain C, E. Coli (Lacz) Beta-Galactosidase In Complex With
Galactose
pdb|1JZ7|D Chain D, E. Coli (Lacz) Beta-Galactosidase In Complex With
Galactose
Length = 1023
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 5/50 (10%)
Query: 320 SDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDC-----KRLQF 364
S+ G++ + + L++N VTLPA+ +++ +L EM+ C KR QF
Sbjct: 709 SEAGHISAWQQWRLAENLSVTLPAASHAIPHLTTSEMDFCIELGNKRWQF 758
>pdb|1PX3|A Chain A, E. Coli (Lacz) Beta-Galactosidase (G794a)
pdb|1PX3|B Chain B, E. Coli (Lacz) Beta-Galactosidase (G794a)
pdb|1PX3|C Chain C, E. Coli (Lacz) Beta-Galactosidase (G794a)
pdb|1PX3|D Chain D, E. Coli (Lacz) Beta-Galactosidase (G794a)
pdb|1PX4|A Chain A, E. Coli (Lacz) Beta-Galactosidase (G794a) With Iptg Bound
pdb|1PX4|B Chain B, E. Coli (Lacz) Beta-Galactosidase (G794a) With Iptg Bound
pdb|1PX4|C Chain C, E. Coli (Lacz) Beta-Galactosidase (G794a) With Iptg Bound
pdb|1PX4|D Chain D, E. Coli (Lacz) Beta-Galactosidase (G794a) With Iptg Bound
Length = 1023
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 5/50 (10%)
Query: 320 SDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDC-----KRLQF 364
S+ G++ + + L++N VTLPA+ +++ +L EM+ C KR QF
Sbjct: 709 SEAGHISAWQQWRLAENLSVTLPAASHAIPHLTTSEMDFCIELGNKRWQF 758
>pdb|3MUY|1 Chain 1, E. Coli (Lacz) Beta-Galactosidase (R599a)
pdb|3MUY|2 Chain 2, E. Coli (Lacz) Beta-Galactosidase (R599a)
pdb|3MUY|3 Chain 3, E. Coli (Lacz) Beta-Galactosidase (R599a)
pdb|3MUY|4 Chain 4, E. Coli (Lacz) Beta-Galactosidase (R599a)
Length = 1023
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 5/50 (10%)
Query: 320 SDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDC-----KRLQF 364
S+ G++ + + L++N VTLPA+ +++ +L EM+ C KR QF
Sbjct: 709 SEAGHISAWQQWRLAENLSVTLPAASHAIPHLTTSEMDFCIELGNKRWQF 758
>pdb|1F4A|A Chain A, E. Coli (Lacz) Beta-Galactosidase (Ncs Constrained
Monomer- Orthorhombic)
pdb|1F4A|B Chain B, E. Coli (Lacz) Beta-Galactosidase (Ncs Constrained
Monomer- Orthorhombic)
pdb|1F4A|C Chain C, E. Coli (Lacz) Beta-Galactosidase (Ncs Constrained
Monomer- Orthorhombic)
pdb|1F4A|D Chain D, E. Coli (Lacz) Beta-Galactosidase (Ncs Constrained
Monomer- Orthorhombic)
pdb|1F4H|A Chain A, E. Coli (Lacz) Beta-Galactosidase (Orthorhombic)
pdb|1F4H|B Chain B, E. Coli (Lacz) Beta-Galactosidase (Orthorhombic)
pdb|1F4H|C Chain C, E. Coli (Lacz) Beta-Galactosidase (Orthorhombic)
pdb|1F4H|D Chain D, E. Coli (Lacz) Beta-Galactosidase (Orthorhombic)
Length = 1021
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 5/50 (10%)
Query: 320 SDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDC-----KRLQF 364
S+ G++ + + L++N VTLPA+ +++ +L EM+ C KR QF
Sbjct: 707 SEAGHISAWQQWRLAENLSVTLPAASHAIPHLTTSEMDFCIELGNKRWQF 756
>pdb|3DYM|A Chain A, E. Coli (Lacz) Beta-Galactosidase (H418e)
pdb|3DYM|B Chain B, E. Coli (Lacz) Beta-Galactosidase (H418e)
pdb|3DYM|C Chain C, E. Coli (Lacz) Beta-Galactosidase (H418e)
pdb|3DYM|D Chain D, E. Coli (Lacz) Beta-Galactosidase (H418e)
pdb|3E1F|1 Chain 1, E.Coli (Lacz) Beta-Galactosidase (H418e) In Complex With
Galactose
pdb|3E1F|2 Chain 2, E.Coli (Lacz) Beta-Galactosidase (H418e) In Complex With
Galactose
pdb|3E1F|3 Chain 3, E.Coli (Lacz) Beta-Galactosidase (H418e) In Complex With
Galactose
pdb|3E1F|4 Chain 4, E.Coli (Lacz) Beta-Galactosidase (H418e) In Complex With
Galactose
Length = 1023
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 5/50 (10%)
Query: 320 SDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDC-----KRLQF 364
S+ G++ + + L++N VTLPA+ +++ +L EM+ C KR QF
Sbjct: 709 SEAGHISAWQQWRLAENLSVTLPAASHAIPHLTTSEMDFCIELGNKRWQF 758
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 54/123 (43%), Gaps = 25/123 (20%)
Query: 70 ILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCK----- 124
IL ++ +L K + M+ LQ+L DI + +S + G DC
Sbjct: 354 ILQMNQLKELSKIAEMTTQMKSLQQL-----DISQNSVSYDEKKG-------DCSWTKSL 401
Query: 125 ---NLSSLPVAISSFQCL----RNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVP 177
N+SS + + F+CL + L L +K+K P+ V +E L ELN+ + VP
Sbjct: 402 LSLNMSSNILTDTIFRCLPPRIKVLDLHS-NKIKSIPKQVVKLEALQELNVASNQLKSVP 460
Query: 178 SSI 180
I
Sbjct: 461 DGI 463
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 74/167 (44%), Gaps = 37/167 (22%)
Query: 233 SLEELDISETAVRRPPSSVF-LMKNLRTL--SFSGCNGPPSSASWHL------HLPFNLM 283
S+ LD+S V S VF +K+L+ L +++ N A + L +L +NL+
Sbjct: 267 SVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLL 326
Query: 284 GKSSCLVALMLPSLSG------------------LRSLTKLDLSDCGLGEGAIPSDIGNL 325
G+ LP ++ L L LDL D L + I +
Sbjct: 327 GELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL------TTIHFI 380
Query: 326 HSLNELYLSKNNFVTLPASIN---SLLNLKELEMEDCKRLQFLPQLP 369
S+ +++LS N VTLP IN +L++L E +E+ L FL ++P
Sbjct: 381 PSIPDIFLSGNKLVTLP-KINLTANLIHLSENRLENLDILYFLLRVP 426
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 71/177 (40%), Gaps = 47/177 (26%)
Query: 195 KNFARVPSSIN--------GLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRR 246
K F VP I G +KTLN D LEEL+++E V
Sbjct: 21 KRFVAVPEGIPTETRLLDLGKNRIKTLN----------QDEFASFPHLEELELNENIVSA 70
Query: 247 -PPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTK 305
P + + NLRTL +S+ L + L +GL +LTK
Sbjct: 71 VEPGAFNNLFNLRTLGL----------------------RSNRLKLIPLGVFTGLSNLTK 108
Query: 306 LDLSDCGLGEGAIPSD--IGNLHSLNELYLSKNNFVTLPASINSLLN-LKELEMEDC 359
LD+S+ + I D +L++L L + N+ V + S LN L++L +E C
Sbjct: 109 LDISENKI---VILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC 162
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 62/160 (38%), Gaps = 25/160 (15%)
Query: 201 PSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFL-MKNLRT 259
P++ GL L TL+L C E P + +L+ L + + ++ P + F + NL
Sbjct: 97 PTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTH 156
Query: 260 LSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIP 319
L G P S H + GL SL +L L + P
Sbjct: 157 LFLHGNRIP--SVPEH--------------------AFRGLHSLDRLLLHQNHVAR-VHP 193
Query: 320 SDIGNLHSLNELYLSKNNFVTLPASI-NSLLNLKELEMED 358
+L L LYL NN LPA + L +L+ L + D
Sbjct: 194 HAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRLND 233
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 306 LDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKRLQFL 365
LDLS+ + I ++I L LYL+ N+ LPA I +L NL+ L++ RL L
Sbjct: 229 LDLSNLQIFN--ISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSH-NRLTSL 285
Query: 366 P 366
P
Sbjct: 286 P 286
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 282 LMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTL 341
L G S + + +LS LR L DLS L ++P+++G+ L Y N TL
Sbjct: 254 LNGNSLTELPAEIKNLSNLRVL---DLSHNRLT--SLPAELGSCFQLKYFYFFDNMVTTL 308
Query: 342 PASINSLLNLKELEME 357
P +L NL+ L +E
Sbjct: 309 PWEFGNLCNLQFLGVE 324
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 67/155 (43%), Gaps = 22/155 (14%)
Query: 92 LQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSK-L 150
LQEL L T + ELP + L L +L L+ K + ++ S+F L +L + G +K L
Sbjct: 280 LQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRL 339
Query: 151 KKFPQIVTTMEDLSELNLDGTSITEVPSSIXXXXXXXXXXXXDCKNFARVPSSINGLKSL 210
+ + +E+L EL+L I DC N + L L
Sbjct: 340 ELGTGCLENLENLRELDLSHDDI----------------ETSDCCNL-----QLRNLSHL 378
Query: 211 KTLNLSGCCKLENVPDTLGQVESLEELDISETAVR 245
++LNLS L + + LE LD++ T ++
Sbjct: 379 QSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLK 413
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,804,012
Number of Sequences: 62578
Number of extensions: 723581
Number of successful extensions: 1612
Number of sequences better than 100.0: 61
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 53
Number of HSP's that attempted gapping in prelim test: 1537
Number of HSP's gapped (non-prelim): 106
length of query: 611
length of database: 14,973,337
effective HSP length: 105
effective length of query: 506
effective length of database: 8,402,647
effective search space: 4251739382
effective search space used: 4251739382
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)