Query 007237
Match_columns 611
No_of_seqs 461 out of 4005
Neff 9.4
Searched_HMMs 46136
Date Thu Mar 28 20:50:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007237.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007237hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 5.6E-41 1.2E-45 394.5 38.5 503 6-582 551-1101(1153)
2 PLN00113 leucine-rich repeat r 100.0 1.7E-32 3.7E-37 322.3 22.8 367 8-383 88-488 (968)
3 PLN00113 leucine-rich repeat r 100.0 2.7E-32 5.8E-37 320.6 23.8 373 8-387 159-588 (968)
4 KOG0444 Cytoskeletal regulator 99.9 8.1E-29 1.7E-33 252.1 -6.0 324 32-390 51-382 (1255)
5 KOG0444 Cytoskeletal regulator 99.9 8E-29 1.7E-33 252.1 -6.4 326 7-366 49-379 (1255)
6 KOG4194 Membrane glycoprotein 99.9 2.5E-27 5.3E-32 240.0 3.9 317 15-360 80-427 (873)
7 PLN03210 Resistant to P. syrin 99.9 4.3E-24 9.2E-29 252.0 23.9 318 65-408 557-908 (1153)
8 KOG4194 Membrane glycoprotein 99.9 2.3E-26 4.9E-31 233.1 3.1 322 6-357 95-447 (873)
9 KOG0472 Leucine-rich repeat pr 99.9 1E-25 2.2E-30 219.3 -9.9 321 8-360 109-539 (565)
10 KOG0472 Leucine-rich repeat pr 99.9 8.4E-26 1.8E-30 219.8 -11.9 245 8-266 63-308 (565)
11 KOG0618 Serine/threonine phosp 99.9 2.9E-24 6.2E-29 229.0 -7.2 366 3-387 35-468 (1081)
12 KOG0618 Serine/threonine phosp 99.8 2.7E-20 5.9E-25 198.9 -4.0 220 90-337 241-487 (1081)
13 PRK15387 E3 ubiquitin-protein 99.7 8.5E-17 1.8E-21 177.5 17.6 54 302-360 403-456 (788)
14 PRK15387 E3 ubiquitin-protein 99.7 1.1E-16 2.3E-21 176.7 17.8 263 13-345 201-465 (788)
15 PRK15370 E3 ubiquitin-protein 99.7 3.1E-16 6.7E-21 174.1 12.2 245 66-360 178-426 (754)
16 PRK15370 E3 ubiquitin-protein 99.6 2.4E-15 5.2E-20 167.1 14.8 227 90-367 178-405 (754)
17 cd00116 LRR_RI Leucine-rich re 99.6 7.3E-17 1.6E-21 165.5 -3.8 159 184-359 137-317 (319)
18 KOG4237 Extracellular matrix p 99.5 4.1E-16 8.8E-21 152.5 -4.1 238 2-244 80-358 (498)
19 KOG0617 Ras suppressor protein 99.5 3.4E-16 7.3E-21 136.3 -4.4 167 29-205 26-193 (264)
20 KOG0617 Ras suppressor protein 99.5 7E-16 1.5E-20 134.3 -5.3 156 59-217 26-182 (264)
21 KOG4658 Apoptotic ATPase [Sign 99.5 3.3E-14 7.2E-19 160.4 5.0 204 11-222 521-731 (889)
22 cd00116 LRR_RI Leucine-rich re 99.5 4.6E-15 1E-19 152.1 -2.2 254 71-360 3-289 (319)
23 KOG4237 Extracellular matrix p 99.4 4.6E-15 1E-19 145.3 -5.6 272 47-362 56-335 (498)
24 KOG4658 Apoptotic ATPase [Sign 99.3 2.5E-12 5.5E-17 145.4 5.5 252 89-366 522-787 (889)
25 KOG3207 Beta-tubulin folding c 99.0 1.1E-10 2.3E-15 116.5 0.5 204 135-360 119-337 (505)
26 KOG1259 Nischarin, modulator o 99.0 1.7E-10 3.7E-15 109.6 1.2 133 161-343 284-416 (490)
27 KOG3207 Beta-tubulin folding c 98.9 7.7E-11 1.7E-15 117.5 -1.8 207 110-339 118-339 (505)
28 COG4886 Leucine-rich repeat (L 98.9 1.8E-09 3.9E-14 114.2 7.5 192 70-267 97-289 (394)
29 COG4886 Leucine-rich repeat (L 98.9 2.4E-09 5.1E-14 113.3 8.0 192 18-221 98-290 (394)
30 KOG0532 Leucine-rich repeat (L 98.7 6.7E-10 1.5E-14 114.3 -3.8 57 302-360 212-271 (722)
31 KOG1259 Nischarin, modulator o 98.7 2.6E-09 5.6E-14 101.7 0.3 201 130-360 207-410 (490)
32 KOG1909 Ran GTPase-activating 98.7 4.1E-10 8.8E-15 109.6 -5.4 115 228-360 181-309 (382)
33 KOG1909 Ran GTPase-activating 98.7 5.5E-10 1.2E-14 108.7 -5.9 246 11-267 28-310 (382)
34 PF14580 LRR_9: Leucine-rich r 98.6 1.3E-08 2.9E-13 92.9 2.8 102 91-196 20-125 (175)
35 PF14580 LRR_9: Leucine-rich r 98.6 2.5E-08 5.5E-13 91.1 3.7 101 90-192 42-148 (175)
36 KOG0532 Leucine-rich repeat (L 98.6 1.7E-09 3.7E-14 111.3 -4.9 191 69-266 78-271 (722)
37 KOG4341 F-box protein containi 98.6 6E-10 1.3E-14 110.7 -8.7 87 182-268 292-385 (483)
38 PRK15386 type III secretion pr 98.5 5.7E-07 1.2E-11 92.1 10.8 62 160-226 51-112 (426)
39 PLN03150 hypothetical protein; 98.4 3.9E-07 8.4E-12 101.4 8.3 108 91-198 419-529 (623)
40 KOG2120 SCF ubiquitin ligase, 98.4 1.5E-09 3.3E-14 103.2 -9.1 105 162-266 186-297 (419)
41 PLN03150 hypothetical protein; 98.4 5E-07 1.1E-11 100.5 8.4 108 138-245 419-528 (623)
42 PRK15386 type III secretion pr 98.4 2.1E-06 4.4E-11 88.1 11.2 134 88-243 50-188 (426)
43 KOG4341 F-box protein containi 98.3 1.2E-08 2.5E-13 101.7 -6.4 252 14-269 139-440 (483)
44 KOG2120 SCF ubiquitin ligase, 98.3 1.4E-08 2.9E-13 96.9 -6.8 176 91-266 186-374 (419)
45 PF13855 LRR_8: Leucine rich r 98.1 2.3E-06 5.1E-11 63.9 4.1 56 67-122 2-58 (61)
46 KOG0531 Protein phosphatase 1, 98.1 4.4E-07 9.6E-12 96.4 -1.2 127 65-196 71-198 (414)
47 KOG2982 Uncharacterized conser 98.0 1.1E-06 2.4E-11 84.0 0.7 231 136-388 44-286 (418)
48 KOG0531 Protein phosphatase 1, 98.0 9.4E-07 2E-11 93.9 -0.0 126 12-148 71-197 (414)
49 PF13855 LRR_8: Leucine rich r 98.0 7.7E-06 1.7E-10 61.1 4.6 57 162-218 2-59 (61)
50 KOG3665 ZYG-1-like serine/thre 97.9 3.7E-06 8E-11 93.5 1.7 132 36-174 122-263 (699)
51 KOG1859 Leucine-rich repeat pr 97.9 4.7E-08 1E-12 103.5 -12.6 127 163-339 166-292 (1096)
52 KOG3665 ZYG-1-like serine/thre 97.7 1.9E-05 4.2E-10 87.8 2.6 132 113-245 122-263 (699)
53 PF12799 LRR_4: Leucine Rich r 97.6 3.9E-05 8.4E-10 52.7 2.7 34 327-360 2-35 (44)
54 KOG2982 Uncharacterized conser 97.6 1.8E-05 4E-10 75.9 0.6 41 299-339 222-262 (418)
55 PF12799 LRR_4: Leucine Rich r 97.5 7.3E-05 1.6E-09 51.4 2.7 41 301-343 1-41 (44)
56 KOG1644 U2-associated snRNP A' 97.3 0.00041 9E-09 63.3 6.1 80 114-195 43-124 (233)
57 KOG1859 Leucine-rich repeat pr 97.3 5E-06 1.1E-10 88.6 -7.8 122 209-360 165-290 (1096)
58 KOG1947 Leucine rich repeat pr 97.3 1.5E-05 3.2E-10 86.6 -4.9 134 33-170 185-330 (482)
59 COG5238 RNA1 Ran GTPase-activa 97.2 0.0001 2.3E-09 70.0 0.6 84 65-148 29-131 (388)
60 KOG4579 Leucine-rich repeat (L 97.2 1.3E-05 2.7E-10 68.3 -4.9 90 88-179 51-141 (177)
61 KOG1947 Leucine rich repeat pr 97.1 4.8E-05 1.1E-09 82.6 -2.8 232 136-385 187-442 (482)
62 COG5238 RNA1 Ran GTPase-activa 97.1 4.2E-05 9.2E-10 72.6 -3.0 88 86-174 26-133 (388)
63 KOG1644 U2-associated snRNP A' 97.1 0.0009 2E-08 61.2 5.3 103 37-148 43-151 (233)
64 KOG4579 Leucine-rich repeat (L 96.7 9.9E-05 2.2E-09 63.0 -3.5 108 37-149 28-135 (177)
65 KOG2739 Leucine-rich acidic nu 96.7 0.00079 1.7E-08 64.1 2.0 85 32-124 39-127 (260)
66 KOG2739 Leucine-rich acidic nu 96.3 0.0026 5.7E-08 60.6 2.7 87 297-384 61-157 (260)
67 PF13306 LRR_5: Leucine rich r 94.8 0.077 1.7E-06 45.9 6.3 86 6-99 5-90 (129)
68 KOG2123 Uncharacterized conser 94.7 0.0016 3.5E-08 62.4 -4.8 98 66-167 19-123 (388)
69 PF00560 LRR_1: Leucine Rich R 94.5 0.012 2.7E-07 33.5 0.4 20 327-346 1-20 (22)
70 PF00560 LRR_1: Leucine Rich R 94.3 0.021 4.6E-07 32.6 1.0 18 92-109 2-19 (22)
71 KOG2123 Uncharacterized conser 94.2 0.0023 5E-08 61.3 -5.0 63 297-362 37-101 (388)
72 PF13306 LRR_5: Leucine rich r 94.1 0.22 4.7E-06 43.0 7.6 33 88-121 10-43 (129)
73 PF13504 LRR_7: Leucine rich r 93.1 0.061 1.3E-06 28.5 1.4 15 327-341 2-16 (17)
74 PF13504 LRR_7: Leucine rich r 90.8 0.16 3.5E-06 26.8 1.4 12 92-103 3-14 (17)
75 smart00369 LRR_TYP Leucine-ric 87.6 0.49 1.1E-05 28.0 2.1 21 325-345 1-21 (26)
76 smart00370 LRR Leucine-rich re 87.6 0.49 1.1E-05 28.0 2.1 21 325-345 1-21 (26)
77 KOG3864 Uncharacterized conser 86.3 0.11 2.3E-06 48.0 -2.0 84 14-101 102-187 (221)
78 smart00369 LRR_TYP Leucine-ric 82.9 0.94 2E-05 26.8 1.7 19 90-108 2-20 (26)
79 smart00370 LRR Leucine-rich re 82.9 0.94 2E-05 26.8 1.7 19 90-108 2-20 (26)
80 KOG4308 LRR-containing protein 81.7 0.01 2.2E-07 63.5 -12.4 178 68-245 89-303 (478)
81 KOG3864 Uncharacterized conser 79.3 0.22 4.8E-06 46.0 -2.8 37 325-361 150-188 (221)
82 smart00367 LRR_CC Leucine-rich 76.9 1.2 2.5E-05 26.4 0.8 17 35-51 1-17 (26)
83 KOG4308 LRR-containing protein 76.4 0.03 6.6E-07 60.0 -10.8 87 136-222 203-304 (478)
84 smart00364 LRR_BAC Leucine-ric 73.5 2.4 5.1E-05 25.2 1.4 18 326-343 2-19 (26)
85 KOG0473 Leucine-rich repeat pr 62.2 0.45 9.7E-06 44.9 -4.9 58 90-148 65-122 (326)
86 KOG0473 Leucine-rich repeat pr 60.1 0.3 6.4E-06 46.1 -6.4 84 87-172 39-122 (326)
87 smart00365 LRR_SD22 Leucine-ri 59.1 8.2 0.00018 23.0 1.8 16 326-341 2-17 (26)
88 PF13516 LRR_6: Leucine Rich r 57.4 5.2 0.00011 23.0 0.8 14 326-339 2-15 (24)
89 smart00368 LRR_RI Leucine rich 38.5 27 0.00059 21.0 1.8 14 326-339 2-15 (28)
90 PF05725 FNIP: FNIP Repeat; I 26.8 82 0.0018 21.2 2.9 11 368-378 32-42 (44)
91 KOG3763 mRNA export factor TAP 22.1 39 0.00084 36.5 0.8 19 463-481 440-458 (585)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=5.6e-41 Score=394.53 Aligned_cols=503 Identities=22% Similarity=0.277 Sum_probs=356.1
Q ss_pred cccccCCCcccEEEccCCCC------CCcCC-CCCCCc-ccccccccccccccccCccccccCccccCCCccEEEecCCc
Q 007237 6 FCFQQHLNMLKVMKLSHSEN------LIKTP-DFTEAP-NLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCL 77 (611)
Q Consensus 6 ~~~~~~l~~L~~L~Ls~~~~------l~~~~-~~~~~~-~L~~L~L~~c~~l~~i~~s~~~l~~L~~l~~L~~L~Ls~~~ 77 (611)
-+.++.+++|+.|.+..+.. ...+| .|..+| +|+.|.+.++ .++.+|..+. +.+|++|+++++.
T Consensus 551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~-~l~~lP~~f~-------~~~L~~L~L~~s~ 622 (1153)
T PLN03210 551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKY-PLRCMPSNFR-------PENLVKLQMQGSK 622 (1153)
T ss_pred HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCC-CCCCCCCcCC-------ccCCcEEECcCcc
Confidence 45578899999999876531 11233 455554 6899999886 5677776531 4688899998876
Q ss_pred CcCcCCcccCCCCCCcEEEcCCCC-ccccCccccCCCCCcEEeccCCCCCCCCcccCCCCCCCCEEEecCCCCCcccccc
Q 007237 78 KLRKFPHVVGSMECLQELLLDGTD-IKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQI 156 (611)
Q Consensus 78 ~~~~lp~~l~~l~~L~~L~L~~~~-i~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~ 156 (611)
+ ..++..+..+++|++|+++++. ++.+| .+..+++|++|++++|..+..+|..+.++++|+.|++++|..++.+|..
T Consensus 623 l-~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~ 700 (1153)
T PLN03210 623 L-EKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG 700 (1153)
T ss_pred c-cccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc
Confidence 4 4577778889999999998764 66777 4778889999999999989999988888999999999999888888876
Q ss_pred cCCCCCCCEEeecCccC-CCcCcccCCCCCCCEEeccCCcCCcccccCccCCCCCCEEEecCCCCCcc------c-Cccc
Q 007237 157 VTTMEDLSELNLDGTSI-TEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLEN------V-PDTL 228 (611)
Q Consensus 157 ~~~l~~L~~L~L~~~~i-~~l~~~l~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~c~~l~~------~-p~~l 228 (611)
+ ++++|+.|++++|.. ..+|.. .++|+.|+++++. ...+|..+ .+++|+.|.+.++..... + +...
T Consensus 701 i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~-i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~ 774 (1153)
T PLN03210 701 I-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETA-IEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMT 774 (1153)
T ss_pred C-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCc-cccccccc-cccccccccccccchhhccccccccchhhh
Confidence 6 788899999988743 345532 4678888998876 45677655 578888888876542111 1 1112
Q ss_pred CCCCCccEEeccCCCc-ccCCccccccCCCcEEEcCCCCCCCCCCcccccccccccCCccchhhccCCCCCCCCCCCEEe
Q 007237 229 GQVESLEELDISETAV-RRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLD 307 (611)
Q Consensus 229 ~~l~~L~~L~l~~~~~-~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~ 307 (611)
...++|+.|++++|.. ..+|..+..+++|+.|++++|..+.. +|....+++|+.|+
T Consensus 775 ~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~-----------------------LP~~~~L~sL~~L~ 831 (1153)
T PLN03210 775 MLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLET-----------------------LPTGINLESLESLD 831 (1153)
T ss_pred hccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCe-----------------------eCCCCCccccCEEE
Confidence 2346899999998854 47888899999999999999874422 33333678999999
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCCcCCcccccCCCcCeeecccccccCcCCCCC---CCcceeeecCCCCcc
Q 007237 308 LSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKRLQFLPQLP---PNIIFVKVNGCSSLV 384 (611)
Q Consensus 308 Ls~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp---~~L~~L~i~~C~sL~ 384 (611)
+++|... ..+|.. .++|+.|+|++|.++.+|.++..+++|+.|++++|++++.+|..+ ++|+.+++.+|++|+
T Consensus 832 Ls~c~~L-~~~p~~---~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~ 907 (1153)
T PLN03210 832 LSGCSRL-RTFPDI---STNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALT 907 (1153)
T ss_pred CCCCCcc-cccccc---ccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccc
Confidence 9998654 334432 468999999999999999999999999999999999999988644 466778999999998
Q ss_pred cccCcccc--------------cccCCcccccccchhhccchhHHHHHHHHHHHhhcCCCcceEEeecCCCCCCcccccC
Q 007237 385 TLLGALKL--------------CKSNGIVIECIDSLKLLRNNGWAILMLREYLEAVSDPLKDFSTVIPGSKIPKWFMYQN 450 (611)
Q Consensus 385 ~l~~~~~~--------------~~l~~l~~~~c~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~iP~wf~~~~ 450 (611)
.+.....+ .....+.|.+|.+|+.... ++ .. .....+++||.++|+||.||+
T Consensus 908 ~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~~~a~-------l~----~~---~~~~~~~l~g~evp~~f~hr~ 973 (1153)
T PLN03210 908 EASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLDQEAL-------LQ----QQ---SIFKQLILSGEEVPSYFTHRT 973 (1153)
T ss_pred cccCCCCchhhhhhcccccccCCchhccccccccCCCchhh-------hc----cc---ccceEEECCCccCchhccCCc
Confidence 76532211 1113357889988863211 11 11 111357899999999999999
Q ss_pred CCceEE-EEcCCCCcCCCcEEEEEEEEEEecCCcchhhcccccccceeEEEeCCCCceEEeeccccCCCCCCeEEEEEec
Q 007237 451 EGSSIT-VTRPSYLYNMNKIVGYAICCVFHVPRHSTRIKKRRHSYELQCCMDGSDRGFFITFGGKFSHSGSDHLWLLFLS 529 (611)
Q Consensus 451 ~g~si~-~~lp~~~~~~~~~~g~~~c~v~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~sdh~~~~~~~ 529 (611)
.|++++ |.+|+.|... .|.||++|+|+....... ......+.+.|.+.+..+..+. ....+|+|+.|..
T Consensus 974 ~g~sl~~i~l~~~~~~~-~~~~f~~c~v~~~~~~~~--~~~~~~~~~~c~~~~~~~~~~~-------~~~~~~~~~~~~~ 1043 (1153)
T PLN03210 974 TGASLTNIPLLHISPCQ-PFFRFRACAVVDSESFFI--ISVSFDIQVCCRFIDRLGNHFD-------SPYQPHVFSVTKK 1043 (1153)
T ss_pred ccceeeeeccCCcccCC-CccceEEEEEEecCcccc--CCCceeEEEEEEEECCCCCccc-------cCCCceeEeeecc
Confidence 999998 9999999876 799999999997644221 0112345678888877554432 2345555555542
Q ss_pred c---------ccc--CCc-ccccccceEEEEEechhhccccCCCCCCccEeeeeceEEecccccc
Q 007237 530 P---------REC--YDR-RWIFESNHFKLSFNDAREKYDMAGSGTGLKVKRCGFHPVYMHEVEE 582 (611)
Q Consensus 530 ~---------~~~--~~~-~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~vk~cG~~l~y~~~~~~ 582 (611)
. ... +.. .....++|+.+.|++. ......+||+|||+++|.++..+
T Consensus 1044 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~-------~~~~~~~~~~cg~~~~~~~~~~~ 1101 (1153)
T PLN03210 1044 GSHLVIFDCCFPLNEDNAPLAELNYDHVDIQFRLT-------NKNSQLKLKGCGIRLSEDDSSLN 1101 (1153)
T ss_pred ccceEEecccccccccccchhccCCceeeEEEEEe-------cCCCCeEEEeeeEEEeccCCCcc
Confidence 1 110 000 1112377888887622 11223699999999999766554
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.7e-32 Score=322.29 Aligned_cols=367 Identities=23% Similarity=0.272 Sum_probs=227.6
Q ss_pred cccCCCcccEEEccCCCCCCcCCC--CCCCcccccccccccccccccCccccccCccccCCCccEEEecCCcCcCcCCcc
Q 007237 8 FQQHLNMLKVMKLSHSENLIKTPD--FTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHV 85 (611)
Q Consensus 8 ~~~~l~~L~~L~Ls~~~~l~~~~~--~~~~~~L~~L~L~~c~~l~~i~~s~~~l~~L~~l~~L~~L~Ls~~~~~~~lp~~ 85 (611)
.+..+++|++|+|++|+....+|. +..+++|++|+|++|.....+|.. .+++|++|+|++|.+.+.+|..
T Consensus 88 ~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~--------~l~~L~~L~Ls~n~~~~~~p~~ 159 (968)
T PLN00113 88 AIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRG--------SIPNLETLDLSNNMLSGEIPND 159 (968)
T ss_pred HHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCcc--------ccCCCCEEECcCCcccccCChH
Confidence 355788888888888876555653 447888888888887544444431 2566777777777766667777
Q ss_pred cCCCCCCcEEEcCCCCcc-ccCccccCCCCCcEEeccCCCCCCCCcccCCCCCCCCEEEecCCCCCcccccccCCCCCCC
Q 007237 86 VGSMECLQELLLDGTDIK-ELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLS 164 (611)
Q Consensus 86 l~~l~~L~~L~L~~~~i~-~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~~~~l~~L~ 164 (611)
++++++|++|++++|.+. .+|..++++++|++|++++|.....+|..++++++|+.|++++|...+.+|..++++++|+
T Consensus 160 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 239 (968)
T PLN00113 160 IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLN 239 (968)
T ss_pred HhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCC
Confidence 777777777777777664 5666677777777777777666666666666677777777777666666666666777777
Q ss_pred EEeecCccCC-CcCcccCCCCCCCEEeccCCcCCcccccCccCCCCCCEEEecCCCCCcccCcccCCCCCccEEeccCCC
Q 007237 165 ELNLDGTSIT-EVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETA 243 (611)
Q Consensus 165 ~L~L~~~~i~-~l~~~l~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~c~~l~~~p~~l~~l~~L~~L~l~~~~ 243 (611)
+|++++|.+. .+|..++.+++|+.|++++|...+.+|..+..+++|++|++++|...+.+|..+..+++|+.|++++|.
T Consensus 240 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~ 319 (968)
T PLN00113 240 HLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNN 319 (968)
T ss_pred EEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCc
Confidence 7777766665 455566666666666666666666666666666666666666666555666666666666666666666
Q ss_pred cc-cCCccccccCCCcEEEcCCCCCCCCCCc-cccccccccc------------------------CCccchhhccCC-C
Q 007237 244 VR-RPPSSVFLMKNLRTLSFSGCNGPPSSAS-WHLHLPFNLM------------------------GKSSCLVALMLP-S 296 (611)
Q Consensus 244 ~~-~~~~~~~~l~~L~~L~l~~c~~~~~~~~-~~~~~~~~~~------------------------~~~~~~~~~~l~-~ 296 (611)
+. .+|..+..+++|+.|++++|........ ......+..+ ....+.....+| .
T Consensus 320 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~ 399 (968)
T PLN00113 320 FTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKS 399 (968)
T ss_pred cCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHH
Confidence 55 3455555566666666666553211110 0000001111 111111111122 2
Q ss_pred CCCCCCCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCC-cCCcccccCCCcCeeecccccccCcCCCC--CCCcc
Q 007237 297 LSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFV-TLPASINSLLNLKELEMEDCKRLQFLPQL--PPNII 373 (611)
Q Consensus 297 l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~lp~l--p~~L~ 373 (611)
+..+++|+.|++++|.+. +.+|..+..+++|+.|++++|++. .+|..+..+++|+.|++++|+....+|.. .++|+
T Consensus 400 ~~~~~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~ 478 (968)
T PLN00113 400 LGACRSLRRVRLQDNSFS-GELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLE 478 (968)
T ss_pred HhCCCCCCEEECcCCEee-eECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccce
Confidence 555667777777777664 456666667777777777777766 44555666777777777777665555542 24677
Q ss_pred eeeecCCCCc
Q 007237 374 FVKVNGCSSL 383 (611)
Q Consensus 374 ~L~i~~C~sL 383 (611)
.|++++|.-.
T Consensus 479 ~L~ls~n~l~ 488 (968)
T PLN00113 479 NLDLSRNQFS 488 (968)
T ss_pred EEECcCCccC
Confidence 7777766543
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.7e-32 Score=320.64 Aligned_cols=373 Identities=25% Similarity=0.318 Sum_probs=207.4
Q ss_pred cccCCCcccEEEccCCCCCCcCC-CCCCCcccccccccccccccccCccccccCccccCCCccEEEecCCcCcCcCCccc
Q 007237 8 FQQHLNMLKVMKLSHSENLIKTP-DFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVV 86 (611)
Q Consensus 8 ~~~~l~~L~~L~Ls~~~~l~~~~-~~~~~~~L~~L~L~~c~~l~~i~~s~~~l~~L~~l~~L~~L~Ls~~~~~~~lp~~l 86 (611)
.+..+++|++|+|++|......| .+..+++|++|++++|.....+|..++. +++|++|+|++|.+.+.+|..+
T Consensus 159 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~------l~~L~~L~L~~n~l~~~~p~~l 232 (968)
T PLN00113 159 DIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQ------MKSLKWIYLGYNNLSGEIPYEI 232 (968)
T ss_pred HHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcC------cCCccEEECcCCccCCcCChhH
Confidence 34555666666666655443443 3555666666666665433344443333 4566777777776666667667
Q ss_pred CCCCCCcEEEcCCCCcc-ccCccccCCCCCcEEeccCCCCCCCCcccCCCCCCCCEEEecCCCCCcccccccCCCCCCCE
Q 007237 87 GSMECLQELLLDGTDIK-ELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSE 165 (611)
Q Consensus 87 ~~l~~L~~L~L~~~~i~-~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~~~~l~~L~~ 165 (611)
+++++|++|++++|.+. .+|..++++++|++|++++|.....+|..+.++++|+.|++++|...+.+|..+.++++|++
T Consensus 233 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 312 (968)
T PLN00113 233 GGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEI 312 (968)
T ss_pred hcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcE
Confidence 77777777777776665 56666667777777777666655556666666666666666666655556666666666666
Q ss_pred EeecCccCC-CcCcccCCCCCCCEEeccCCcCCcccccCccCCCCCCEEEecCCCCC-----------------------
Q 007237 166 LNLDGTSIT-EVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKL----------------------- 221 (611)
Q Consensus 166 L~L~~~~i~-~l~~~l~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~c~~l----------------------- 221 (611)
|++++|.+. .+|..+..+++|+.|++++|...+.+|..++.+++|+.|++++|...
T Consensus 313 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l 392 (968)
T PLN00113 313 LHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSL 392 (968)
T ss_pred EECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEe
Confidence 666666554 34444555555555555555555555555555555555555544433
Q ss_pred -cccCcccCCCCCccEEeccCCCcc-cCCccccccCCCcEEEcCCCCCCCCCCc--ccc---------------------
Q 007237 222 -ENVPDTLGQVESLEELDISETAVR-RPPSSVFLMKNLRTLSFSGCNGPPSSAS--WHL--------------------- 276 (611)
Q Consensus 222 -~~~p~~l~~l~~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~~c~~~~~~~~--~~~--------------------- 276 (611)
..+|..++.+++|+.|++++|.+. .+|..+..+++|+.|++++|........ +..
T Consensus 393 ~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~ 472 (968)
T PLN00113 393 EGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF 472 (968)
T ss_pred cccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc
Confidence 334444444555555555555554 3444444555555555555442211100 000
Q ss_pred -cccccccCCccchhhccCC-CCCCCCCCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCC-cCCcccccCCCcCe
Q 007237 277 -HLPFNLMGKSSCLVALMLP-SLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFV-TLPASINSLLNLKE 353 (611)
Q Consensus 277 -~~~~~~~~~~~~~~~~~l~-~l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~-~lp~~i~~l~~L~~ 353 (611)
...+..+....+......| .+..+++|+.|++++|.+. +.+|..+..+++|+.|+|++|.++ .+|..+..+++|+.
T Consensus 473 ~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 551 (968)
T PLN00113 473 GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLS-GEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQ 551 (968)
T ss_pred ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcce-eeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCE
Confidence 0001111111111111222 2455666666666666664 456666666677777777777666 55666667777777
Q ss_pred eecccccccCcCCCC---CCCcceeeecCCCCccccc
Q 007237 354 LEMEDCKRLQFLPQL---PPNIIFVKVNGCSSLVTLL 387 (611)
Q Consensus 354 L~L~~c~~L~~lp~l---p~~L~~L~i~~C~sL~~l~ 387 (611)
|++++|+....+|.. .++|+.|++++|+-...++
T Consensus 552 L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p 588 (968)
T PLN00113 552 LDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588 (968)
T ss_pred EECCCCcccccCChhHhcCcccCEEeccCCcceeeCC
Confidence 777777655555542 2456677777766554454
No 4
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.93 E-value=8.1e-29 Score=252.09 Aligned_cols=324 Identities=23% Similarity=0.352 Sum_probs=218.5
Q ss_pred CCCCcccccccccccccccccCccccccCccccCCCccEEEecCCcCc-CcCCcccCCCCCCcEEEcCCCCccccCcccc
Q 007237 32 FTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKL-RKFPHVVGSMECLQELLLDGTDIKELPLSIE 110 (611)
Q Consensus 32 ~~~~~~L~~L~L~~c~~l~~i~~s~~~l~~L~~l~~L~~L~Ls~~~~~-~~lp~~l~~l~~L~~L~L~~~~i~~lp~~~~ 110 (611)
++.+.+|+.|.+.++ .+..++- .|..++.||.+.+.+|++. ..+|..+..+..|..|||++|++++.|..+.
T Consensus 51 L~~lqkLEHLs~~HN-~L~~vhG------ELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE 123 (1255)
T KOG0444|consen 51 LSRLQKLEHLSMAHN-QLISVHG------ELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLE 123 (1255)
T ss_pred HHHHhhhhhhhhhhh-hhHhhhh------hhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhh
Confidence 444445555555443 3333332 1223566677777766654 4566677777777777777777777777777
Q ss_pred CCCCCcEEeccCCCCCCCCccc-CCCCCCCCEEEecCCCCCcccccccCCCCCCCEEeecCccCCCcC-cccCCCCCCCE
Q 007237 111 HLFGLVQLTLNDCKNLSSLPVA-ISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVP-SSIELLPGLEL 188 (611)
Q Consensus 111 ~l~~L~~L~L~~c~~l~~lp~~-l~~l~~L~~L~L~~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~l~-~~l~~l~~L~~ 188 (611)
+.+++-.|+|++ +++..+|.. +.+++.|-.|||++| .++.+|..+..+.+|++|.|++|.+..+. ..+..+++|++
T Consensus 124 ~AKn~iVLNLS~-N~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~v 201 (1255)
T KOG0444|consen 124 YAKNSIVLNLSY-NNIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSV 201 (1255)
T ss_pred hhcCcEEEEccc-CccccCCchHHHhhHhHhhhccccc-hhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhh
Confidence 777777777776 346666654 345666777777763 56667777777777777777776554211 12334566667
Q ss_pred EeccCCcC-CcccccCccCCCCCCEEEecCCCCCcccCcccCCCCCccEEeccCCCcccCCccccccCCCcEEEcCCCCC
Q 007237 189 LNLNDCKN-FARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNG 267 (611)
Q Consensus 189 L~L~~~~~-~~~lp~~i~~l~~L~~L~l~~c~~l~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~ 267 (611)
|++++.+. +..+|.++..+.+|..++++.| .+..+|+.+-++++|+.|++++|.++++........+|++|+++.|..
T Consensus 202 Lhms~TqRTl~N~Ptsld~l~NL~dvDlS~N-~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQL 280 (1255)
T KOG0444|consen 202 LHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN-NLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQL 280 (1255)
T ss_pred hhcccccchhhcCCCchhhhhhhhhcccccc-CCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchh
Confidence 77766433 3456666767777777777653 345566666677777777777777776666666666777777776652
Q ss_pred CCCCCcccccccccccCCccchhhccCCC-CCCCCCCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCCcCCcccc
Q 007237 268 PPSSASWHLHLPFNLMGKSSCLVALMLPS-LSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASIN 346 (611)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~i~ 346 (611)
. .+|+ +..++.|+.|.+.+|++.-+.+|.+++.+..|+.+...+|++.-+|+++.
T Consensus 281 t------------------------~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglc 336 (1255)
T KOG0444|consen 281 T------------------------VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLC 336 (1255)
T ss_pred c------------------------cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhh
Confidence 2 2343 66788888888888888878888888888888888888888888888888
Q ss_pred cCCCcCeeecccccccCcCCC---CCCCcceeeecCCCCcccccCcc
Q 007237 347 SLLNLKELEMEDCKRLQFLPQ---LPPNIIFVKVNGCSSLVTLLGAL 390 (611)
Q Consensus 347 ~l~~L~~L~L~~c~~L~~lp~---lp~~L~~L~i~~C~sL~~l~~~~ 390 (611)
.|..|+.|.|++++ |..+|+ +.+.|+.|++++-|+|..-+.+.
T Consensus 337 RC~kL~kL~L~~Nr-LiTLPeaIHlL~~l~vLDlreNpnLVMPPKP~ 382 (1255)
T KOG0444|consen 337 RCVKLQKLKLDHNR-LITLPEAIHLLPDLKVLDLRENPNLVMPPKPN 382 (1255)
T ss_pred hhHHHHHhcccccc-eeechhhhhhcCCcceeeccCCcCccCCCCcc
Confidence 88888888887665 666776 56778888888888887766544
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.93 E-value=8e-29 Score=252.11 Aligned_cols=326 Identities=26% Similarity=0.349 Sum_probs=280.5
Q ss_pred ccccCCCcccEEEccCCCCCCcCCCCCCCcccccccccccc-cccccCccccccCccccCCCccEEEecCCcCcCcCCcc
Q 007237 7 CFQQHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCT-KLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHV 85 (611)
Q Consensus 7 ~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~L~~L~L~~c~-~l~~i~~s~~~l~~L~~l~~L~~L~Ls~~~~~~~lp~~ 85 (611)
+....+.+|+.|.+++|+....-..++.+|.|+.+++..+. +-..||+.++. +.-|..||||+|. +...|..
T Consensus 49 eEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~------l~dLt~lDLShNq-L~EvP~~ 121 (1255)
T KOG0444|consen 49 EELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFR------LKDLTILDLSHNQ-LREVPTN 121 (1255)
T ss_pred HHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcc------cccceeeecchhh-hhhcchh
Confidence 34556788999999999766666789999999999999873 33458888777 6778899999975 5678999
Q ss_pred cCCCCCCcEEEcCCCCccccCcc-ccCCCCCcEEeccCCCCCCCCcccCCCCCCCCEEEecCCCCCcccccccCCCCCCC
Q 007237 86 VGSMECLQELLLDGTDIKELPLS-IEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLS 164 (611)
Q Consensus 86 l~~l~~L~~L~L~~~~i~~lp~~-~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~~~~l~~L~ 164 (611)
+...+++-+|+|++|+|..+|.. +.+++.|-.|+|++ +.+..+|+.+..+..|++|+|++|.....-...+..|++|+
T Consensus 122 LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~-NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~ 200 (1255)
T KOG0444|consen 122 LEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSN-NRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLS 200 (1255)
T ss_pred hhhhcCcEEEEcccCccccCCchHHHhhHhHhhhcccc-chhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhh
Confidence 99999999999999999999975 57899999999998 56899999999999999999999986654445556788999
Q ss_pred EEeecCccCC--CcCcccCCCCCCCEEeccCCcCCcccccCccCCCCCCEEEecCCCCCcccCcccCCCCCccEEeccCC
Q 007237 165 ELNLDGTSIT--EVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISET 242 (611)
Q Consensus 165 ~L~L~~~~i~--~l~~~l~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~c~~l~~~p~~l~~l~~L~~L~l~~~ 242 (611)
.|.+++++-+ .+|.++..+.+|..++++.| .+..+|+.+.++++|+.|++++|.. ..+.-..+...+|+.|+++.|
T Consensus 201 vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N-~Lp~vPecly~l~~LrrLNLS~N~i-teL~~~~~~W~~lEtLNlSrN 278 (1255)
T KOG0444|consen 201 VLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN-NLPIVPECLYKLRNLRRLNLSGNKI-TELNMTEGEWENLETLNLSRN 278 (1255)
T ss_pred hhhcccccchhhcCCCchhhhhhhhhcccccc-CCCcchHHHhhhhhhheeccCcCce-eeeeccHHHHhhhhhhccccc
Confidence 9999998655 89999999999999999965 5678899999999999999999754 444445667789999999999
Q ss_pred CcccCCccccccCCCcEEEcCCCCCCCCCCcccccccccccCCccchhhccCCC-CCCCCCCCEEeccCCCCCCCCCCCC
Q 007237 243 AVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPS-LSGLRSLTKLDLSDCGLGEGAIPSD 321 (611)
Q Consensus 243 ~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-l~~l~~L~~L~Ls~~~l~~~~~~~~ 321 (611)
+++.+|+.+..++.|+.|.+.+|+... ..+|+ ++.+..|+.+..++|++ +..|.+
T Consensus 279 QLt~LP~avcKL~kL~kLy~n~NkL~F----------------------eGiPSGIGKL~~Levf~aanN~L--ElVPEg 334 (1255)
T KOG0444|consen 279 QLTVLPDAVCKLTKLTKLYANNNKLTF----------------------EGIPSGIGKLIQLEVFHAANNKL--ELVPEG 334 (1255)
T ss_pred hhccchHHHhhhHHHHHHHhccCcccc----------------------cCCccchhhhhhhHHHHhhcccc--ccCchh
Confidence 999999999999999999998887321 13444 88899999999999998 679999
Q ss_pred CCCCCCCCEEEcCCCCCCcCCcccccCCCcCeeecccccccCcCC
Q 007237 322 IGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKRLQFLP 366 (611)
Q Consensus 322 l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp 366 (611)
++.|..|+.|.|+.|.+..+|+.|.-|+.|+.|+++.+++|.--|
T Consensus 335 lcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 335 LCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred hhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCccCCC
Confidence 999999999999999999999999999999999999999987544
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.93 E-value=2.5e-27 Score=240.05 Aligned_cols=317 Identities=24% Similarity=0.244 Sum_probs=165.1
Q ss_pred ccEEEccCCCCCC-cCCCCCCCcccccccccccccccccCccccccCccccCCCccEEEecCCcCcCcCCcccCCCCCCc
Q 007237 15 LKVMKLSHSENLI-KTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQ 93 (611)
Q Consensus 15 L~~L~Ls~~~~l~-~~~~~~~~~~L~~L~L~~c~~l~~i~~s~~~l~~L~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~ 93 (611)
-+.||+++|+... ....|..+|||+++++..+ .++.||..... ..+|+.|+|.+|.+...-.+.+..++.||
T Consensus 80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N-~Lt~IP~f~~~------sghl~~L~L~~N~I~sv~se~L~~l~alr 152 (873)
T KOG4194|consen 80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKN-ELTRIPRFGHE------SGHLEKLDLRHNLISSVTSEELSALPALR 152 (873)
T ss_pred eeeeeccccccccCcHHHHhcCCcceeeeeccc-hhhhccccccc------ccceeEEeeeccccccccHHHHHhHhhhh
Confidence 3457777775322 2234667777777777665 66666643322 23455555555554444444455555555
Q ss_pred EEEcCCCCccccCc-cccCCCCCcEEeccCCCCCCCCcccCCCCCCCCEEEecCCCCCcccccccCCCCCCCEEeecCcc
Q 007237 94 ELLLDGTDIKELPL-SIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTS 172 (611)
Q Consensus 94 ~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~~~~l~~L~~L~L~~~~ 172 (611)
.|||+.|.|.++|. ++..-.++++|+|++|.....-...|..+.+|-.|.|+.|....--+..++++++|+.|+|..|.
T Consensus 153 slDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ 232 (873)
T KOG4194|consen 153 SLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNR 232 (873)
T ss_pred hhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccc
Confidence 55555555555542 23333455555555533222222234444555555555543333333344445555555555554
Q ss_pred C------------------------CCcCcc-cCCCCCCCEEeccCCcCCcccccCccCCCCCCEEEecCCCCCcccCcc
Q 007237 173 I------------------------TEVPSS-IELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDT 227 (611)
Q Consensus 173 i------------------------~~l~~~-l~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~c~~l~~~p~~ 227 (611)
| ..+-+. +..+.++++|+|..|+....-..++.++++|+.|++++|..-..-++.
T Consensus 233 irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~ 312 (873)
T KOG4194|consen 233 IRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDS 312 (873)
T ss_pred eeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecch
Confidence 4 443332 334445555555554444444444555555555555554444433444
Q ss_pred cCCCCCccEEeccCCCcccCCc-cccccCCCcEEEcCCCCCCCCCCcccccccccccCCccchhhccCCCCCCCCCCCEE
Q 007237 228 LGQVESLEELDISETAVRRPPS-SVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKL 306 (611)
Q Consensus 228 l~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L 306 (611)
....++|+.|+++.|+++.+++ .+..+..|++|.+++|+.. ...--.|.++++|++|
T Consensus 313 WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~----------------------~l~e~af~~lssL~~L 370 (873)
T KOG4194|consen 313 WSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSID----------------------HLAEGAFVGLSSLHKL 370 (873)
T ss_pred hhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchH----------------------HHHhhHHHHhhhhhhh
Confidence 4444555555555555554433 2333455555555554310 0001125567778888
Q ss_pred eccCCCCCC--CCCCCCCCCCCCCCEEEcCCCCCCcCCc-ccccCCCcCeeeccccc
Q 007237 307 DLSDCGLGE--GAIPSDIGNLHSLNELYLSKNNFVTLPA-SINSLLNLKELEMEDCK 360 (611)
Q Consensus 307 ~Ls~~~l~~--~~~~~~l~~l~~L~~L~L~~n~l~~lp~-~i~~l~~L~~L~L~~c~ 360 (611)
||++|.++- +.-...+..+++|+.|.+.||++..+|. .+..+..|+.|+|.++.
T Consensus 371 dLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 371 DLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNA 427 (873)
T ss_pred cCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCc
Confidence 888776641 1122335667788888888888887775 57777888888887776
No 7
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.92 E-value=4.3e-24 Score=252.00 Aligned_cols=318 Identities=31% Similarity=0.454 Sum_probs=190.6
Q ss_pred CCCccEEEecCCc------CcCcCCcccCCCC-CCcEEEcCCCCccccCccccCCCCCcEEeccCCCCCCCCcccCCCCC
Q 007237 65 VESLKILILSGCL------KLRKFPHVVGSME-CLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQ 137 (611)
Q Consensus 65 l~~L~~L~Ls~~~------~~~~lp~~l~~l~-~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~ 137 (611)
+++|+.|.+..+. ....+|+.+..++ +|+.|++.+++++.+|..+ .+.+|++|++.+|. +..+|.++..++
T Consensus 557 m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~-l~~L~~~~~~l~ 634 (1153)
T PLN03210 557 MRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSK-LEKLWDGVHSLT 634 (1153)
T ss_pred CccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCcc-ccccccccccCC
Confidence 5556666554332 1123455454443 4666666666666666665 35666677776643 556666666666
Q ss_pred CCCEEEecCCCCCcccccccCCCCCCCEEeecCc-cCCCcCcccCCCCCCCEEeccCCcCCcccccCccCCCCCCEEEec
Q 007237 138 CLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGT-SITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLS 216 (611)
Q Consensus 138 ~L~~L~L~~~~~l~~~p~~~~~l~~L~~L~L~~~-~i~~l~~~l~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~ 216 (611)
+|+.|+|++|..++.+|. +..+++|++|++.+| .+..+|..++++++|+.|++++|..++.+|..+ ++++|+.|+++
T Consensus 635 ~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Ls 712 (1153)
T PLN03210 635 GLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLS 712 (1153)
T ss_pred CCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCC
Confidence 777777766666666654 555666777777664 345667677777777777777777777777655 57777777777
Q ss_pred CCCCCcccCcccCCCCCccEEeccCCCcccCCccccccCCCcEEEcCCCCCCCCCCcccccccccccCCccchhhccCC-
Q 007237 217 GCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLP- 295 (611)
Q Consensus 217 ~c~~l~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~- 295 (611)
+|..+..+|.. .++|+.|+++++.+..+|..+ .+++|++|.+.++....-..... ...+
T Consensus 713 gc~~L~~~p~~---~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~----------------~l~~~ 772 (1153)
T PLN03210 713 GCSRLKSFPDI---STNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEKLWERVQ----------------PLTPL 772 (1153)
T ss_pred CCCCccccccc---cCCcCeeecCCCccccccccc-cccccccccccccchhhcccccc----------------ccchh
Confidence 77776666653 356677777777777776654 46677777776644211000000 0000
Q ss_pred CCCCCCCCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCC-CCCcCCcccccCCCcCeeecccccccCcCCCCC-----
Q 007237 296 SLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKN-NFVTLPASINSLLNLKELEMEDCKRLQFLPQLP----- 369 (611)
Q Consensus 296 ~l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~L~~n-~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp----- 369 (611)
.....++|+.|++++|... ..+|..++++++|+.|++++| ++..+|..+ .+++|+.|++++|..++.+|.++
T Consensus 773 ~~~~~~sL~~L~Ls~n~~l-~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~ 850 (1153)
T PLN03210 773 MTMLSPSLTRLFLSDIPSL-VELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISD 850 (1153)
T ss_pred hhhccccchheeCCCCCCc-cccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCE
Confidence 0112345666666665442 345555666666666666655 344555544 45566666666665555554432
Q ss_pred ------------------CCcceeeecCCCCcccccCc-ccccccCCcccccccchhh
Q 007237 370 ------------------PNIIFVKVNGCSSLVTLLGA-LKLCKSNGIVIECIDSLKL 408 (611)
Q Consensus 370 ------------------~~L~~L~i~~C~sL~~l~~~-~~~~~l~~l~~~~c~~L~~ 408 (611)
++|+.|++.+|++|+.++.. .....++.+.+.+|.+|..
T Consensus 851 L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~ 908 (1153)
T PLN03210 851 LNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTE 908 (1153)
T ss_pred eECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccccc
Confidence 45677777788888887643 3445667788889988864
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.92 E-value=2.3e-26 Score=233.08 Aligned_cols=322 Identities=25% Similarity=0.300 Sum_probs=228.8
Q ss_pred cccccCCCcccEEEccCCCCCCcCCCCCCCc-ccccccccccccccccCccccccCccccCC------------------
Q 007237 6 FCFQQHLNMLKVMKLSHSENLIKTPDFTEAP-NLEELYLEGCTKLRKVHPSLLLHNKLIFVE------------------ 66 (611)
Q Consensus 6 ~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~-~L~~L~L~~c~~l~~i~~s~~~l~~L~~l~------------------ 66 (611)
+.|+.++++|+.+++.+| .+..+|.|+... +|+.|+|.++ .+..+.. ..|..++
T Consensus 95 ~~~f~nl~nLq~v~l~~N-~Lt~IP~f~~~sghl~~L~L~~N-~I~sv~s-----e~L~~l~alrslDLSrN~is~i~~~ 167 (873)
T KOG4194|consen 95 FEFFYNLPNLQEVNLNKN-ELTRIPRFGHESGHLEKLDLRHN-LISSVTS-----EELSALPALRSLDLSRNLISEIPKP 167 (873)
T ss_pred HHHHhcCCcceeeeeccc-hhhhcccccccccceeEEeeecc-ccccccH-----HHHHhHhhhhhhhhhhchhhcccCC
Confidence 457788899999998887 467788776544 4777777765 3333321 1222234
Q ss_pred ------CccEEEecCCcCcCcCCcccCCCCCCcEEEcCCCCccccCc-cccCCCCCcEEeccCCCCCCCC-cccCCCCCC
Q 007237 67 ------SLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPL-SIEHLFGLVQLTLNDCKNLSSL-PVAISSFQC 138 (611)
Q Consensus 67 ------~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~c~~l~~l-p~~l~~l~~ 138 (611)
++++|+|++|.++..-...|.++.+|..|.|+.|.++.+|. .|.++++|+.|+|..|. ++.+ ...|..+++
T Consensus 168 sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~-irive~ltFqgL~S 246 (873)
T KOG4194|consen 168 SFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNR-IRIVEGLTFQGLPS 246 (873)
T ss_pred CCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccc-eeeehhhhhcCchh
Confidence 45555555555554444455555566666666666666653 34446666666665532 3333 223555666
Q ss_pred CCEEEecCCCCCcccccccCCCCCCCEEeecCccCCCcCcc-cCCCCCCCEEeccCCcCCcccccCccCCCCCCEEEecC
Q 007237 139 LRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSS-IELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSG 217 (611)
Q Consensus 139 L~~L~L~~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~l~~~-l~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~ 217 (611)
|+.|.|..|...+--...+-.+.++++|+|..|++..+... +-+++.|+.|++++|.....-+++....++|+.|+++.
T Consensus 247 l~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~ 326 (873)
T KOG4194|consen 247 LQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSS 326 (873)
T ss_pred hhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccc
Confidence 66666666544433345667788999999999999987654 78899999999999988877778778889999999999
Q ss_pred CCCCcccCcccCCCCCccEEeccCCCcccCCcc-ccccCCCcEEEcCCCCCCCCCCcccccccccccCCccchhhccCCC
Q 007237 218 CCKLENVPDTLGQVESLEELDISETAVRRPPSS-VFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPS 296 (611)
Q Consensus 218 c~~l~~~p~~l~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 296 (611)
|....--+..+..+.+|+.|.+++|.+..+... +..+++|+.|+++.|... .+.. .....
T Consensus 327 N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls------------------~~IE-Daa~~ 387 (873)
T KOG4194|consen 327 NRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELS------------------WCIE-DAAVA 387 (873)
T ss_pred cccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEE------------------EEEe-cchhh
Confidence 988777778899999999999999999977554 455899999999998721 0111 12223
Q ss_pred CCCCCCCCEEeccCCCCCCCCCC-CCCCCCCCCCEEEcCCCCCCcC-CcccccCCCcCeeecc
Q 007237 297 LSGLRSLTKLDLSDCGLGEGAIP-SDIGNLHSLNELYLSKNNFVTL-PASINSLLNLKELEME 357 (611)
Q Consensus 297 l~~l~~L~~L~Ls~~~l~~~~~~-~~l~~l~~L~~L~L~~n~l~~l-p~~i~~l~~L~~L~L~ 357 (611)
+.++++|++|++.+|++. .+| .++.++++|+.|+|.+|.+.++ |..+.++ .|++|.+.
T Consensus 388 f~gl~~LrkL~l~gNqlk--~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 388 FNGLPSLRKLRLTGNQLK--SIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMN 447 (873)
T ss_pred hccchhhhheeecCceee--ecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhc
Confidence 778999999999999994 355 5789999999999999999865 4567777 88888764
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.88 E-value=1e-25 Score=219.26 Aligned_cols=321 Identities=26% Similarity=0.334 Sum_probs=217.2
Q ss_pred cccCCCcccEEEccCCCCCCcCCCCCCCcccccccccccccccccCccccccCcccc-----------------CCCccE
Q 007237 8 FQQHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIF-----------------VESLKI 70 (611)
Q Consensus 8 ~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~L~~L~L~~c~~l~~i~~s~~~l~~L~~-----------------l~~L~~ 70 (611)
.+..+.+|+.++.++|....-.++++.+..|+.|+..++ .+..+|.+++.+.++.. ++.|+.
T Consensus 109 ~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N-~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ 187 (565)
T KOG0472|consen 109 QIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNN-QISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKH 187 (565)
T ss_pred HHhhhhhhhhhhccccceeecCchHHHHhhhhhhhcccc-ccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHh
Confidence 344566777777777766555667777778887777665 66667766665544332 256777
Q ss_pred EEecCCcCcCcCCcccCCCCCCcEEEcCCCCccccCccccCCCCCcEEeccCCCCCCCCcccCC-CCCCCCEEEecCCCC
Q 007237 71 LILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAIS-SFQCLRNLKLSGCSK 149 (611)
Q Consensus 71 L~Ls~~~~~~~lp~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~-~l~~L~~L~L~~~~~ 149 (611)
||...| .++.+|+.++.+..|+.|++..|.+..+| .|..+..|++|.++. +.++.+|..+. ++.+|.+||+++| +
T Consensus 188 ld~~~N-~L~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~-N~i~~lpae~~~~L~~l~vLDLRdN-k 263 (565)
T KOG0472|consen 188 LDCNSN-LLETLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGE-NQIEMLPAEHLKHLNSLLVLDLRDN-K 263 (565)
T ss_pred cccchh-hhhcCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcc-cHHHhhHHHHhcccccceeeecccc-c
Confidence 776554 45778888999999999999999999998 788888888888887 55788887754 8999999999984 7
Q ss_pred CcccccccCCCCCCCEEeecCccCCCcCcccCCCCCCCEEeccCCcCCcc------------------------------
Q 007237 150 LKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFAR------------------------------ 199 (611)
Q Consensus 150 l~~~p~~~~~l~~L~~L~L~~~~i~~l~~~l~~l~~L~~L~L~~~~~~~~------------------------------ 199 (611)
+++.|+.+..+.+|+.|++++|.|+.+|.+++++ .|+.|-+.||..-+.
T Consensus 264 lke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~ 342 (565)
T KOG0472|consen 264 LKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEG 342 (565)
T ss_pred cccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcc
Confidence 8889999999999999999999999999999999 899999888752110
Q ss_pred -------cccC----ccCCCCCCEEEecC--------------------------C-----------------------C
Q 007237 200 -------VPSS----INGLKSLKTLNLSG--------------------------C-----------------------C 219 (611)
Q Consensus 200 -------lp~~----i~~l~~L~~L~l~~--------------------------c-----------------------~ 219 (611)
.|.+ +....+.+.|++++ | .
T Consensus 343 ~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn 422 (565)
T KOG0472|consen 343 GTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNN 422 (565)
T ss_pred cccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcC
Confidence 0110 11223344444433 2 1
Q ss_pred CCcccCcccCCCCCccEEeccCCCcccCCccccccCCCcEEEcCCCCCCCCCCcccccccccccCCccchhhccCCC-CC
Q 007237 220 KLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPS-LS 298 (611)
Q Consensus 220 ~l~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-l~ 298 (611)
.....|..+..+++|..|++++|.+.++|...+.+..|+.|+++.|+.. .+|. +-
T Consensus 423 ~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr------------------------~lP~~~y 478 (565)
T KOG0472|consen 423 KISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFR------------------------MLPECLY 478 (565)
T ss_pred ccccchHHHHhhhcceeeecccchhhhcchhhhhhhhhheecccccccc------------------------cchHHHh
Confidence 2222333445566666777777766677766666666777777666411 0111 11
Q ss_pred CCCCCCEEeccCCCCCCCCCCC-CCCCCCCCCEEEcCCCCCCcCCcccccCCCcCeeeccccc
Q 007237 299 GLRSLTKLDLSDCGLGEGAIPS-DIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCK 360 (611)
Q Consensus 299 ~l~~L~~L~Ls~~~l~~~~~~~-~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~ 360 (611)
.+..++.+-.+++.+. .++. .+.++.+|..|||.+|.+..+|..++++.+|++|++.+++
T Consensus 479 ~lq~lEtllas~nqi~--~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 479 ELQTLETLLASNNQIG--SVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred hHHHHHHHHhcccccc--ccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCc
Confidence 1223344444445552 3433 3677777777777777777777777777777777777776
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.88 E-value=8.4e-26 Score=219.81 Aligned_cols=245 Identities=24% Similarity=0.309 Sum_probs=158.6
Q ss_pred cccCCCcccEEEccCCCCCCcCCCCCCCcccccccccccccccccCccccccCccccCCCccEEEecCCcCcCcCCcccC
Q 007237 8 FQQHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVG 87 (611)
Q Consensus 8 ~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~L~~L~L~~c~~l~~i~~s~~~l~~L~~l~~L~~L~Ls~~~~~~~lp~~l~ 87 (611)
..+.+..|.++++++|+.....|.+..+..++.|+.+++ ++.++|+.++. +++|+.|+++.|.+ ..+|+.++
T Consensus 63 dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n-~ls~lp~~i~s------~~~l~~l~~s~n~~-~el~~~i~ 134 (565)
T KOG0472|consen 63 DLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHN-KLSELPEQIGS------LISLVKLDCSSNEL-KELPDSIG 134 (565)
T ss_pred hhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccc-hHhhccHHHhh------hhhhhhhhccccce-eecCchHH
Confidence 345566666666666665555556666666666666664 56666665555 45666677766543 34566666
Q ss_pred CCCCCcEEEcCCCCccccCccccCCCCCcEEeccCCCCCCCCcccCCCCCCCCEEEecCCCCCcccccccCCCCCCCEEe
Q 007237 88 SMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELN 167 (611)
Q Consensus 88 ~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~~~~l~~L~~L~ 167 (611)
.+..|+.|+..+|++..+|..++++.+|..|++.++ .++.+|...-+++.|++||... +.++.+|+.++.|.+|.-|+
T Consensus 135 ~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n-~l~~l~~~~i~m~~L~~ld~~~-N~L~tlP~~lg~l~~L~~Ly 212 (565)
T KOG0472|consen 135 RLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGN-KLKALPENHIAMKRLKHLDCNS-NLLETLPPELGGLESLELLY 212 (565)
T ss_pred HHhhhhhhhccccccccCchHHHHHHHHHHhhcccc-chhhCCHHHHHHHHHHhcccch-hhhhcCChhhcchhhhHHHH
Confidence 777777777777777777777777777777777663 3455554443466777776654 35566777777777777777
Q ss_pred ecCccCCCcCcccCCCCCCCEEeccCCcCCcccccCcc-CCCCCCEEEecCCCCCcccCcccCCCCCccEEeccCCCccc
Q 007237 168 LDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSIN-GLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRR 246 (611)
Q Consensus 168 L~~~~i~~l~~~l~~l~~L~~L~L~~~~~~~~lp~~i~-~l~~L~~L~l~~c~~l~~~p~~l~~l~~L~~L~l~~~~~~~ 246 (611)
+..|++..+| .|+.+..|+.|+++.|. ...+|..+. .+++|.+|++.+| ++++.|..+..+.+|+.||+++|.++.
T Consensus 213 L~~Nki~~lP-ef~gcs~L~Elh~g~N~-i~~lpae~~~~L~~l~vLDLRdN-klke~Pde~clLrsL~rLDlSNN~is~ 289 (565)
T KOG0472|consen 213 LRRNKIRFLP-EFPGCSLLKELHVGENQ-IEMLPAEHLKHLNSLLVLDLRDN-KLKEVPDEICLLRSLERLDLSNNDISS 289 (565)
T ss_pred hhhcccccCC-CCCccHHHHHHHhcccH-HHhhHHHHhcccccceeeecccc-ccccCchHHHHhhhhhhhcccCCcccc
Confidence 7777777666 56666666666666543 344554443 6677777777663 556667777777777777777777777
Q ss_pred CCccccccCCCcEEEcCCCC
Q 007237 247 PPSSVFLMKNLRTLSFSGCN 266 (611)
Q Consensus 247 ~~~~~~~l~~L~~L~l~~c~ 266 (611)
+|.+++++ .|+.|.+.||.
T Consensus 290 Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 290 LPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred CCcccccc-eeeehhhcCCc
Confidence 77777777 67777666665
No 11
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.86 E-value=2.9e-24 Score=228.99 Aligned_cols=366 Identities=23% Similarity=0.310 Sum_probs=237.7
Q ss_pred CCCcccccCCCcccEEEccCCCCCCcCCCCCCCcccccccccccccccccCccccccCccccCCCccEEEecCCcCcCcC
Q 007237 3 LAPFCFQQHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKF 82 (611)
Q Consensus 3 ~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~L~~L~L~~c~~l~~i~~s~~~l~~L~~l~~L~~L~Ls~~~~~~~l 82 (611)
-.|.++++..-+|+.||+++|+...-.-.+..+++|+.|+++.+ .+..+|.+... +++|++|+|.+| .+..+
T Consensus 35 ~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n-~i~~vp~s~~~------~~~l~~lnL~~n-~l~~l 106 (1081)
T KOG0618|consen 35 SRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRN-YIRSVPSSCSN------MRNLQYLNLKNN-RLQSL 106 (1081)
T ss_pred cCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchh-hHhhCchhhhh------hhcchhheeccc-hhhcC
Confidence 34678888888899999999976555556889999999999875 88888866554 788999999875 56778
Q ss_pred CcccCCCCCCcEEEcCCCCccccCccccCCCCCcEEeccCCCCCC-------------------CCcccCCCCCCCCEEE
Q 007237 83 PHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLS-------------------SLPVAISSFQCLRNLK 143 (611)
Q Consensus 83 p~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~c~~l~-------------------~lp~~l~~l~~L~~L~ 143 (611)
|..+..+++|++|++++|.+..+|.-+..++.+..+..++|..+. .++..+..+.. .|+
T Consensus 107 P~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ld 184 (1081)
T KOG0618|consen 107 PASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLD 184 (1081)
T ss_pred chhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eee
Confidence 999999999999999999999999877777777666666652222 22322222222 355
Q ss_pred ecCCCCCcccccccCCCCCCCEEeecCccCCCcC-------------------cccCCCCCCCEEeccCCcCCcccccCc
Q 007237 144 LSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVP-------------------SSIELLPGLELLNLNDCKNFARVPSSI 204 (611)
Q Consensus 144 L~~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~l~-------------------~~l~~l~~L~~L~L~~~~~~~~lp~~i 204 (611)
|++|.... ..+.++.+|+.+....+.+..+. .......+|++++++.++ ...+|+|+
T Consensus 185 Lr~N~~~~---~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~-l~~lp~wi 260 (1081)
T KOG0618|consen 185 LRYNEMEV---LDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNN-LSNLPEWI 260 (1081)
T ss_pred cccchhhh---hhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhh-hhcchHHH
Confidence 55543330 11122222222222222221110 001223567777777654 34566777
Q ss_pred cCCCCCCEEEecCCCCCcccCcccCCCCCccEEeccCCCcccCCccccccCCCcEEEcCCCCCCCCCCcc----------
Q 007237 205 NGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASW---------- 274 (611)
Q Consensus 205 ~~l~~L~~L~l~~c~~l~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~---------- 274 (611)
+.+.+|+.++...|.. ..+|..+..+.+|+.|.+..|.+..+|+....+++|++|++..|+...-....
T Consensus 261 ~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ 339 (1081)
T KOG0618|consen 261 GACANLEALNANHNRL-VALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNT 339 (1081)
T ss_pred HhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHH
Confidence 7788888887777654 55555555666666666666666666666666666666666665522111100
Q ss_pred ----------------ccccc-ccccCCccchhhccCCCCCCCCCCCEEeccCCCCCCCCCCCC-CCCCCCCCEEEcCCC
Q 007237 275 ----------------HLHLP-FNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSD-IGNLHSLNELYLSKN 336 (611)
Q Consensus 275 ----------------~~~~~-~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~~~~-l~~l~~L~~L~L~~n 336 (611)
..... ..+....+......+|.+.++++|+.|+|++|++. .+|+. +.+++.|++|+|+||
T Consensus 340 ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~--~fpas~~~kle~LeeL~LSGN 417 (1081)
T KOG0618|consen 340 LNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN--SFPASKLRKLEELEELNLSGN 417 (1081)
T ss_pred HhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc--cCCHHHHhchHHhHHHhcccc
Confidence 00000 11122234455567888999999999999999994 47754 688999999999999
Q ss_pred CCCcCCcccccCCCcCeeecccccccCcCCCC--CCCcceeeecCCCCccccc
Q 007237 337 NFVTLPASINSLLNLKELEMEDCKRLQFLPQL--PPNIIFVKVNGCSSLVTLL 387 (611)
Q Consensus 337 ~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~l--p~~L~~L~i~~C~sL~~l~ 387 (611)
+++.+|..+..++.|++|...++. +.+.|++ .+.|+.+|+ .|..|..+.
T Consensus 418 kL~~Lp~tva~~~~L~tL~ahsN~-l~~fPe~~~l~qL~~lDl-S~N~L~~~~ 468 (1081)
T KOG0618|consen 418 KLTTLPDTVANLGRLHTLRAHSNQ-LLSFPELAQLPQLKVLDL-SCNNLSEVT 468 (1081)
T ss_pred hhhhhhHHHHhhhhhHHHhhcCCc-eeechhhhhcCcceEEec-ccchhhhhh
Confidence 999999888888888877776664 5555553 345566665 344554443
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.75 E-value=2.7e-20 Score=198.89 Aligned_cols=220 Identities=28% Similarity=0.343 Sum_probs=130.1
Q ss_pred CCCcEEEcCCCCccccCccccCCCCCcEEeccCCCCCCCCcccCCCCCCCCEEEecCCCCCcccccccCCCCCCCEEeec
Q 007237 90 ECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLD 169 (611)
Q Consensus 90 ~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~~~~l~~L~~L~L~ 169 (611)
.+|++++++.+.+..+|++++.+.+|+.|++.++ .+..+|..+....+|+.|.+..| .++.+|...+.+.+|++|+|.
T Consensus 241 ~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N-~l~~lp~ri~~~~~L~~l~~~~n-el~yip~~le~~~sL~tLdL~ 318 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLSNLPEWIGACANLEALNANHN-RLVALPLRISRITSLVSLSAAYN-ELEYIPPFLEGLKSLRTLDLQ 318 (1081)
T ss_pred ccceeeecchhhhhcchHHHHhcccceEecccch-hHHhhHHHHhhhhhHHHHHhhhh-hhhhCCCcccccceeeeeeeh
Confidence 3566666666666677766777777777777663 34666666666666666666653 455666666667777777777
Q ss_pred CccCCCcCcccC--------------------------CCCCCCEEeccCCcCCcccccCccCCCCCCEEEecCCCCCcc
Q 007237 170 GTSITEVPSSIE--------------------------LLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLEN 223 (611)
Q Consensus 170 ~~~i~~l~~~l~--------------------------~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~c~~l~~ 223 (611)
.|.+..+|..+- ....|+.|.+.+|......-+.+.+.++|+.|+|++|. +..
T Consensus 319 ~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNr-L~~ 397 (1081)
T KOG0618|consen 319 SNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNR-LNS 397 (1081)
T ss_pred hccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccc-ccc
Confidence 777666654211 11233444444444444444444455555555555543 223
Q ss_pred cCc-ccCCCCCccEEeccCCCcccCCccccccCCCcEEEcCCCCCCCCCCcccccccccccCCccchhhccCCCCCCCCC
Q 007237 224 VPD-TLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRS 302 (611)
Q Consensus 224 ~p~-~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~ 302 (611)
+|. .+.+++.|+.|+++||.++.+|..+..+..|++|...+|.. ..+|.+..++.
T Consensus 398 fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l------------------------~~fPe~~~l~q 453 (1081)
T KOG0618|consen 398 FPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQL------------------------LSFPELAQLPQ 453 (1081)
T ss_pred CCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCce------------------------eechhhhhcCc
Confidence 332 34455555555555555555555555555555555444431 23556777788
Q ss_pred CCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCC
Q 007237 303 LTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNN 337 (611)
Q Consensus 303 L~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~L~~n~ 337 (611)
|+.+|++.|++....+|..... ++|++||++||.
T Consensus 454 L~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 454 LKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNT 487 (1081)
T ss_pred ceEEecccchhhhhhhhhhCCC-cccceeeccCCc
Confidence 8888888888776666655544 778888888875
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.72 E-value=8.5e-17 Score=177.48 Aligned_cols=54 Identities=24% Similarity=0.294 Sum_probs=30.3
Q ss_pred CCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCCcCCcccccCCCcCeeeccccc
Q 007237 302 SLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCK 360 (611)
Q Consensus 302 ~L~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~ 360 (611)
+|+.|++++|.+. .+|.. ..+|+.|++++|+++.+|..+.++++|+.|+|++|+
T Consensus 403 ~L~~LdLS~N~Ls--sIP~l---~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 403 ELKELMVSGNRLT--SLPML---PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred CCCEEEccCCcCC--CCCcc---hhhhhhhhhccCcccccChHHhhccCCCeEECCCCC
Confidence 4555666666553 24432 234555666666666666666666666666666655
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.72 E-value=1.1e-16 Score=176.72 Aligned_cols=263 Identities=24% Similarity=0.294 Sum_probs=200.4
Q ss_pred CcccEEEccCCCCCCcCCC-CCCCcccccccccccccccccCccccccCccccCCCccEEEecCCcCcCcCCcccCCCCC
Q 007237 13 NMLKVMKLSHSENLIKTPD-FTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMEC 91 (611)
Q Consensus 13 ~~L~~L~Ls~~~~l~~~~~-~~~~~~L~~L~L~~c~~l~~i~~s~~~l~~L~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~ 91 (611)
.+-..|+++.+. +..+|+ + .++|+.|++.++ .++.+|.. +++|++|++++|.+. .+|.. .++
T Consensus 201 ~~~~~LdLs~~~-LtsLP~~l--~~~L~~L~L~~N-~Lt~LP~l---------p~~Lk~LdLs~N~Lt-sLP~l---p~s 263 (788)
T PRK15387 201 NGNAVLNVGESG-LTTLPDCL--PAHITTLVIPDN-NLTSLPAL---------PPELRTLEVSGNQLT-SLPVL---PPG 263 (788)
T ss_pred CCCcEEEcCCCC-CCcCCcch--hcCCCEEEccCC-cCCCCCCC---------CCCCcEEEecCCccC-cccCc---ccc
Confidence 346688999984 456665 4 358999999986 77777741 578999999998665 45643 468
Q ss_pred CcEEEcCCCCccccCccccCCCCCcEEeccCCCCCCCCcccCCCCCCCCEEEecCCCCCcccccccCCCCCCCEEeecCc
Q 007237 92 LQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGT 171 (611)
Q Consensus 92 L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~~~~l~~L~~L~L~~~ 171 (611)
|+.|++.+|.+..+|... .+|+.|++++| .++.+|.. +++|+.|++++|. +..+|... .+|+.|++.+|
T Consensus 264 L~~L~Ls~N~L~~Lp~lp---~~L~~L~Ls~N-~Lt~LP~~---p~~L~~LdLS~N~-L~~Lp~lp---~~L~~L~Ls~N 332 (788)
T PRK15387 264 LLELSIFSNPLTHLPALP---SGLCKLWIFGN-QLTSLPVL---PPGLQELSVSDNQ-LASLPALP---SELCKLWAYNN 332 (788)
T ss_pred cceeeccCCchhhhhhch---hhcCEEECcCC-cccccccc---ccccceeECCCCc-cccCCCCc---ccccccccccC
Confidence 999999999999888643 57888999996 47788863 5789999999974 44566532 46888999999
Q ss_pred cCCCcCcccCCCCCCCEEeccCCcCCcccccCccCCCCCCEEEecCCCCCcccCcccCCCCCccEEeccCCCcccCCccc
Q 007237 172 SITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSV 251 (611)
Q Consensus 172 ~i~~l~~~l~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~c~~l~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~ 251 (611)
.++.+|.. ..+|+.|++++|+.. .+|.. ..+|+.|++++|. +..+|.. ..+|+.|++++|.+..+|..
T Consensus 333 ~L~~LP~l---p~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~-L~~LP~l---~~~L~~LdLs~N~Lt~LP~l- 400 (788)
T PRK15387 333 QLTSLPTL---PSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNR-LTSLPAL---PSGLKELIVSGNRLTSLPVL- 400 (788)
T ss_pred cccccccc---ccccceEecCCCccC-CCCCC---Ccccceehhhccc-cccCccc---ccccceEEecCCcccCCCCc-
Confidence 99988853 358999999997654 56653 3578888998865 4457754 35799999999999988864
Q ss_pred cccCCCcEEEcCCCCCCCCCCcccccccccccCCccchhhccCCCCCCCCCCCEEeccCCCCCCCCCCCCCCCCCCCCEE
Q 007237 252 FLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNEL 331 (611)
Q Consensus 252 ~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~L~~L 331 (611)
.++|+.|++++|... .+|.+ ..+|+.|++++|.+. .+|..+..+++|+.|
T Consensus 401 --~s~L~~LdLS~N~Ls------------------------sIP~l--~~~L~~L~Ls~NqLt--~LP~sl~~L~~L~~L 450 (788)
T PRK15387 401 --PSELKELMVSGNRLT------------------------SLPML--PSGLLSLSVYRNQLT--RLPESLIHLSSETTV 450 (788)
T ss_pred --ccCCCEEEccCCcCC------------------------CCCcc--hhhhhhhhhccCccc--ccChHHhhccCCCeE
Confidence 468999999998722 12221 246889999999996 589999999999999
Q ss_pred EcCCCCCC-cCCccc
Q 007237 332 YLSKNNFV-TLPASI 345 (611)
Q Consensus 332 ~L~~n~l~-~lp~~i 345 (611)
+|++|+++ ..|..+
T Consensus 451 dLs~N~Ls~~~~~~L 465 (788)
T PRK15387 451 NLEGNPLSERTLQAL 465 (788)
T ss_pred ECCCCCCCchHHHHH
Confidence 99999998 444434
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.66 E-value=3.1e-16 Score=174.10 Aligned_cols=245 Identities=24% Similarity=0.337 Sum_probs=145.9
Q ss_pred CCccEEEecCCcCcCcCCcccCCCCCCcEEEcCCCCccccCccccCCCCCcEEeccCCCCCCCCcccCCCCCCCCEEEec
Q 007237 66 ESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLS 145 (611)
Q Consensus 66 ~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~ 145 (611)
.+...|+++++.+. .+|..+. ++|+.|++++|.++.+|..+. .+|++|++++|. ++.+|..+ ..+|+.|+++
T Consensus 178 ~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~~l--~~~L~~L~Ls 249 (754)
T PRK15370 178 NNKTELRLKILGLT-TIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQ-LTSIPATL--PDTIQEMELS 249 (754)
T ss_pred cCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCc-cccCChhh--hccccEEECc
Confidence 34556666665433 3454442 356777777777777766553 467777777643 55666544 2467777777
Q ss_pred CCCCCcccccccCCCCCCCEEeecCccCCCcCcccCCCCCCCEEeccCCcCCcccccCccCCCCCCEEEecCCCCCcccC
Q 007237 146 GCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVP 225 (611)
Q Consensus 146 ~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~l~~~l~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~c~~l~~~p 225 (611)
+|.. ..+|..+. .+|+.|++++|.++.+|..+. ++|+.|++++|+.. .+|..+. ++|+.|++++|... .+|
T Consensus 250 ~N~L-~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt-~LP 320 (754)
T PRK15370 250 INRI-TELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLT-ALP 320 (754)
T ss_pred CCcc-CcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCccc-cCC
Confidence 7643 35555443 357777777777776666543 46777777776433 3454332 35677777765433 344
Q ss_pred cccCCCCCccEEeccCCCcccCCccccccCCCcEEEcCCCCCCCCCCcccccccccccCCccchhhccCCCCCCCCCCCE
Q 007237 226 DTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTK 305 (611)
Q Consensus 226 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~ 305 (611)
..+ .++|+.|++++|.+..+|..+ +++|+.|++++|.... +|. .-.++|+.
T Consensus 321 ~~l--~~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~L~~------------------------LP~-~lp~~L~~ 371 (754)
T PRK15370 321 ETL--PPGLKTLEAGENALTSLPASL--PPELQVLDVSKNQITV------------------------LPE-TLPPTITT 371 (754)
T ss_pred ccc--cccceeccccCCccccCChhh--cCcccEEECCCCCCCc------------------------CCh-hhcCCcCE
Confidence 433 256777777777777766544 2577777777765210 111 00146777
Q ss_pred EeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCCcCCcccc----cCCCcCeeeccccc
Q 007237 306 LDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASIN----SLLNLKELEMEDCK 360 (611)
Q Consensus 306 L~Ls~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~i~----~l~~L~~L~L~~c~ 360 (611)
|++++|.+. .+|..+. .+|+.|++++|++..+|..+. .++++..|++.+++
T Consensus 372 LdLs~N~Lt--~LP~~l~--~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 372 LDVSRNALT--NLPENLP--AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred EECCCCcCC--CCCHhHH--HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCC
Confidence 777777774 3555443 357777777777777665443 34667777777766
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.63 E-value=2.4e-15 Score=167.10 Aligned_cols=227 Identities=22% Similarity=0.374 Sum_probs=167.4
Q ss_pred CCCcEEEcCCCCccccCccccCCCCCcEEeccCCCCCCCCcccCCCCCCCCEEEecCCCCCcccccccCCCCCCCEEeec
Q 007237 90 ECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLD 169 (611)
Q Consensus 90 ~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~~~~l~~L~~L~L~ 169 (611)
.+...|++++++++.+|..+. +.|+.|++++| .++.+|..+. .+|+.|++++|. +..+|..+. .+|+.|+++
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N-~LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIP--EQITTLILDNN-ELKSLPENLQ--GNIKTLYANSNQ-LTSIPATLP--DTIQEMELS 249 (754)
T ss_pred cCceEEEeCCCCcCcCCcccc--cCCcEEEecCC-CCCcCChhhc--cCCCEEECCCCc-cccCChhhh--ccccEEECc
Confidence 457889999999999997663 57999999885 5778887653 689999999875 556776543 479999999
Q ss_pred CccCCCcCcccCCCCCCCEEeccCCcCCcccccCccCCCCCCEEEecCCCCCcccCcccCCCCCccEEeccCCCcccCCc
Q 007237 170 GTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPS 249 (611)
Q Consensus 170 ~~~i~~l~~~l~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~c~~l~~~p~~l~~l~~L~~L~l~~~~~~~~~~ 249 (611)
+|.+..+|..+. ++|+.|++++|+.. .+|..+. ++|+.|++++|. +..+|..+. ++|+.|++++|.+..+|.
T Consensus 250 ~N~L~~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~lp--~sL~~L~Ls~N~Lt~LP~ 321 (754)
T PRK15370 250 INRITELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNS-IRTLPAHLP--SGITHLNVQSNSLTALPE 321 (754)
T ss_pred CCccCcCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCc-cccCcccch--hhHHHHHhcCCccccCCc
Confidence 999998887664 58999999877544 6777654 589999998874 445665442 478888898888887776
Q ss_pred cccccCCCcEEEcCCCCCCCCCCcccccccccccCCccchhhccCCC-CCCCCCCCEEeccCCCCCCCCCCCCCCCCCCC
Q 007237 250 SVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPS-LSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSL 328 (611)
Q Consensus 250 ~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~L 328 (611)
.+ .++|+.|++++|.... +|. + .++|+.|++++|++. .+|..+ .++|
T Consensus 322 ~l--~~sL~~L~Ls~N~Lt~------------------------LP~~l--~~sL~~L~Ls~N~L~--~LP~~l--p~~L 369 (754)
T PRK15370 322 TL--PPGLKTLEAGENALTS------------------------LPASL--PPELQVLDVSKNQIT--VLPETL--PPTI 369 (754)
T ss_pred cc--cccceeccccCCcccc------------------------CChhh--cCcccEEECCCCCCC--cCChhh--cCCc
Confidence 44 3688888888875211 111 1 257888888888885 366554 3688
Q ss_pred CEEEcCCCCCCcCCcccccCCCcCeeecccccccCcCCC
Q 007237 329 NELYLSKNNFVTLPASINSLLNLKELEMEDCKRLQFLPQ 367 (611)
Q Consensus 329 ~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~ 367 (611)
+.|+|++|+++.+|..+. .+|+.|++++|+ ++.+|+
T Consensus 370 ~~LdLs~N~Lt~LP~~l~--~sL~~LdLs~N~-L~~LP~ 405 (754)
T PRK15370 370 TTLDVSRNALTNLPENLP--AALQIMQASRNN-LVRLPE 405 (754)
T ss_pred CEEECCCCcCCCCCHhHH--HHHHHHhhccCC-cccCch
Confidence 888888888888887654 368888888875 556654
No 17
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.58 E-value=7.3e-17 Score=165.53 Aligned_cols=159 Identities=24% Similarity=0.234 Sum_probs=75.1
Q ss_pred CCCCEEeccCCcCCc----ccccCccCCCCCCEEEecCCCCCc----ccCcccCCCCCccEEeccCCCcc-----cCCcc
Q 007237 184 PGLELLNLNDCKNFA----RVPSSINGLKSLKTLNLSGCCKLE----NVPDTLGQVESLEELDISETAVR-----RPPSS 250 (611)
Q Consensus 184 ~~L~~L~L~~~~~~~----~lp~~i~~l~~L~~L~l~~c~~l~----~~p~~l~~l~~L~~L~l~~~~~~-----~~~~~ 250 (611)
++|+.|++++|...+ .++..+..+++|++|++++|.... .++..+...++|+.|++++|.+. .+...
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 216 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET 216 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence 455555555554331 122233344455555555554331 12223334455666666655543 12233
Q ss_pred ccccCCCcEEEcCCCCCCCCCCcccccccccccCCccchhhccCCCCCCCCCCCEEeccCCCCCCC---CCCCCCCCCCC
Q 007237 251 VFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEG---AIPSDIGNLHS 327 (611)
Q Consensus 251 ~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~---~~~~~l~~l~~ 327 (611)
+..+++|++|++++|...... . ......++ ...+.|++|++++|.+++. .+...+..+++
T Consensus 217 ~~~~~~L~~L~ls~n~l~~~~-~--------------~~l~~~~~--~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~ 279 (319)
T cd00116 217 LASLKSLEVLNLGDNNLTDAG-A--------------AALASALL--SPNISLLTLSLSCNDITDDGAKDLAEVLAEKES 279 (319)
T ss_pred hcccCCCCEEecCCCcCchHH-H--------------HHHHHHHh--ccCCCceEEEccCCCCCcHHHHHHHHHHhcCCC
Confidence 344566666666665411000 0 00000000 1235677777777776421 12233445567
Q ss_pred CCEEEcCCCCCCcC-----CcccccC-CCcCeeecccc
Q 007237 328 LNELYLSKNNFVTL-----PASINSL-LNLKELEMEDC 359 (611)
Q Consensus 328 L~~L~L~~n~l~~l-----p~~i~~l-~~L~~L~L~~c 359 (611)
|+.+++++|++..- ...+... +.|+.|++.+.
T Consensus 280 L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (319)
T cd00116 280 LLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDD 317 (319)
T ss_pred ccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCC
Confidence 77777777777632 2233334 56666666554
No 18
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.52 E-value=4.1e-16 Score=152.55 Aligned_cols=238 Identities=22% Similarity=0.215 Sum_probs=151.5
Q ss_pred cCCCcccccCCCcccEEEccCCCCCCcCC-CCCCCcccccccccccccccccCccccccCccccCCCccEEEecCCcCcC
Q 007237 2 ILAPFCFQQHLNMLKVMKLSHSENLIKTP-DFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLR 80 (611)
Q Consensus 2 ~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~-~~~~~~~L~~L~L~~c~~l~~i~~s~~~l~~L~~l~~L~~L~Ls~~~~~~ 80 (611)
-.+|...|+.+++||.||||+|....-.| .|.++++|-.|.+.+..+++.+|...+. .+..|+-|.+.-|.+.-
T Consensus 80 ~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~-----gL~slqrLllNan~i~C 154 (498)
T KOG4237|consen 80 SSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFG-----GLSSLQRLLLNANHINC 154 (498)
T ss_pred ccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhh-----hHHHHHHHhcChhhhcc
Confidence 35788899999999999999997544344 5999999999999997899999976533 35667777777776666
Q ss_pred cCCcccCCCCCCcEEEcCCCCccccCc-cccCCCCCcEEeccCCCCC------------CCCcccCCCCCC---------
Q 007237 81 KFPHVVGSMECLQELLLDGTDIKELPL-SIEHLFGLVQLTLNDCKNL------------SSLPVAISSFQC--------- 138 (611)
Q Consensus 81 ~lp~~l~~l~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~c~~l------------~~lp~~l~~l~~--------- 138 (611)
...+.+..+++|..|.+..|.++.++. .+..+..++++.+..+... ...|..++.+..
T Consensus 155 ir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~ 234 (498)
T KOG4237|consen 155 IRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYK 234 (498)
T ss_pred hhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHH
Confidence 667778888888888888888887776 6777777777777554411 111111111111
Q ss_pred -------------CCEE---EecCCCCCcccc-cccCCCCCCCEEeecCccCCCcCc-ccCCCCCCCEEeccCCcCCccc
Q 007237 139 -------------LRNL---KLSGCSKLKKFP-QIVTTMEDLSELNLDGTSITEVPS-SIELLPGLELLNLNDCKNFARV 200 (611)
Q Consensus 139 -------------L~~L---~L~~~~~l~~~p-~~~~~l~~L~~L~L~~~~i~~l~~-~l~~l~~L~~L~L~~~~~~~~l 200 (611)
++.+ -.+.|......| .-++.+++|++|+|++|+++.+.+ ++..+..++.|.|..|+.-..-
T Consensus 235 Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~ 314 (498)
T KOG4237|consen 235 RINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVS 314 (498)
T ss_pred HhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHH
Confidence 1111 001111111112 224566667777777776665543 3666666666666666544433
Q ss_pred ccCccCCCCCCEEEecCCCCCcccCcccCCCCCccEEeccCCCc
Q 007237 201 PSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAV 244 (611)
Q Consensus 201 p~~i~~l~~L~~L~l~~c~~l~~~p~~l~~l~~L~~L~l~~~~~ 244 (611)
...+.++..|++|++.+|.....-|..|..+.+|..|.+-.|.+
T Consensus 315 ~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 315 SGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred HHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence 44456666666677766666666666666666666666655543
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.51 E-value=3.4e-16 Score=136.26 Aligned_cols=167 Identities=23% Similarity=0.316 Sum_probs=96.7
Q ss_pred CCCCCCCcccccccccccccccccCccccccCccccCCCccEEEecCCcCcCcCCcccCCCCCCcEEEcCCCCccccCcc
Q 007237 29 TPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLS 108 (611)
Q Consensus 29 ~~~~~~~~~L~~L~L~~c~~l~~i~~s~~~l~~L~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~L~~~~i~~lp~~ 108 (611)
+|.+..+.+.+.|.|+++ +++.+|+.+.. +.+|+.|++++|. ...+|..+..++.|+.|++..+.+..+|..
T Consensus 26 ~~gLf~~s~ITrLtLSHN-Kl~~vppnia~------l~nlevln~~nnq-ie~lp~~issl~klr~lnvgmnrl~~lprg 97 (264)
T KOG0617|consen 26 LPGLFNMSNITRLTLSHN-KLTVVPPNIAE------LKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMNRLNILPRG 97 (264)
T ss_pred cccccchhhhhhhhcccC-ceeecCCcHHH------hhhhhhhhcccch-hhhcChhhhhchhhhheecchhhhhcCccc
Confidence 344445555555666554 55555555444 4455555655543 334555566666666666666666666666
Q ss_pred ccCCCCCcEEeccCCCC-CCCCcccCCCCCCCCEEEecCCCCCcccccccCCCCCCCEEeecCccCCCcCcccCCCCCCC
Q 007237 109 IEHLFGLVQLTLNDCKN-LSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLE 187 (611)
Q Consensus 109 ~~~l~~L~~L~L~~c~~-l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~l~~~l~~l~~L~ 187 (611)
|+.++.|+.|++.+++. -..+|..|..+..|+.|.+++| ..+.+|..++++++|+.|.+..|.+-++|..++.++.|+
T Consensus 98 fgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dn-dfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lr 176 (264)
T KOG0617|consen 98 FGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDN-DFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLR 176 (264)
T ss_pred cCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCC-CcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHH
Confidence 66666666666665432 2345655555666666666653 445566666666666666666666666666666666666
Q ss_pred EEeccCCcCCcccccCcc
Q 007237 188 LLNLNDCKNFARVPSSIN 205 (611)
Q Consensus 188 ~L~L~~~~~~~~lp~~i~ 205 (611)
.|++.+|+. ..+|..++
T Consensus 177 elhiqgnrl-~vlppel~ 193 (264)
T KOG0617|consen 177 ELHIQGNRL-TVLPPELA 193 (264)
T ss_pred HHhccccee-eecChhhh
Confidence 666666543 34444333
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.48 E-value=7e-16 Score=134.29 Aligned_cols=156 Identities=27% Similarity=0.362 Sum_probs=110.3
Q ss_pred cCccccCCCccEEEecCCcCcCcCCcccCCCCCCcEEEcCCCCccccCccccCCCCCcEEeccCCCCCCCCcccCCCCCC
Q 007237 59 HNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQC 138 (611)
Q Consensus 59 l~~L~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~ 138 (611)
+..|-.+.++..|.||+|.+. ..|..+..+.+|+.|++.+++++++|.++..+++|+.|+++- +.+..+|.+|+.++.
T Consensus 26 ~~gLf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgm-nrl~~lprgfgs~p~ 103 (264)
T KOG0617|consen 26 LPGLFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGM-NRLNILPRGFGSFPA 103 (264)
T ss_pred cccccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecch-hhhhcCccccCCCch
Confidence 334444667777888887644 456677888888888888888888888888888888888875 457788888888888
Q ss_pred CCEEEecCCCCC-cccccccCCCCCCCEEeecCccCCCcCcccCCCCCCCEEeccCCcCCcccccCccCCCCCCEEEecC
Q 007237 139 LRNLKLSGCSKL-KKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSG 217 (611)
Q Consensus 139 L~~L~L~~~~~l-~~~p~~~~~l~~L~~L~L~~~~i~~l~~~l~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~ 217 (611)
|+.||++.|+.. ..+|..+-.|..|+.|+++.|.+.-+|..++.+++|+.|.+++|..+ .+|..++.+..|+.|++.|
T Consensus 104 levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqg 182 (264)
T KOG0617|consen 104 LEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQG 182 (264)
T ss_pred hhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccc
Confidence 888888876544 35677777777778888888877777777777777777777765432 3344444444444443333
No 21
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.46 E-value=3.3e-14 Score=160.41 Aligned_cols=204 Identities=25% Similarity=0.344 Sum_probs=137.5
Q ss_pred CCCcccEEEccCCCCCCcCCCCCCCccccccccccccc-ccccCccccccCccccCCCccEEEecCCcCcCcCCcccCCC
Q 007237 11 HLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTK-LRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSM 89 (611)
Q Consensus 11 ~l~~L~~L~Ls~~~~l~~~~~~~~~~~L~~L~L~~c~~-l~~i~~s~~~l~~L~~l~~L~~L~Ls~~~~~~~lp~~l~~l 89 (611)
.....+.+.+-+++ ...++.-..+++|++|-+.++.. +..++..+ +..++.|++|||++|...+.+|+.++++
T Consensus 521 ~~~~~rr~s~~~~~-~~~~~~~~~~~~L~tLll~~n~~~l~~is~~f-----f~~m~~LrVLDLs~~~~l~~LP~~I~~L 594 (889)
T KOG4658|consen 521 SWNSVRRMSLMNNK-IEHIAGSSENPKLRTLLLQRNSDWLLEISGEF-----FRSLPLLRVLDLSGNSSLSKLPSSIGEL 594 (889)
T ss_pred chhheeEEEEeccc-hhhccCCCCCCccceEEEeecchhhhhcCHHH-----HhhCcceEEEECCCCCccCcCChHHhhh
Confidence 34455666665553 33455556677899999988753 45544332 4458999999999999999999999999
Q ss_pred CCCcEEEcCCCCccccCccccCCCCCcEEeccCCCCCCCCcccCCCCCCCCEEEecCCC--CCcccccccCCCCCCCEEe
Q 007237 90 ECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCS--KLKKFPQIVTTMEDLSELN 167 (611)
Q Consensus 90 ~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~--~l~~~p~~~~~l~~L~~L~ 167 (611)
.+||+|+++++.++.+|..++++..|.+|++..+..+..+|.....+.+||+|.+.... .....-..+.++.+|+.+.
T Consensus 595 i~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls 674 (889)
T KOG4658|consen 595 VHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLS 674 (889)
T ss_pred hhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhhe
Confidence 99999999999999999999999999999999988888887767779999999998753 1112223334455555555
Q ss_pred ecCccCCCcCcccCCCCCCC----EEeccCCcCCcccccCccCCCCCCEEEecCCCCCc
Q 007237 168 LDGTSITEVPSSIELLPGLE----LLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLE 222 (611)
Q Consensus 168 L~~~~i~~l~~~l~~l~~L~----~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~c~~l~ 222 (611)
....+. .+...+..++.|. .+.+.+ ......+..+..+.+|+.|.+.+|...+
T Consensus 675 ~~~~s~-~~~e~l~~~~~L~~~~~~l~~~~-~~~~~~~~~~~~l~~L~~L~i~~~~~~e 731 (889)
T KOG4658|consen 675 ITISSV-LLLEDLLGMTRLRSLLQSLSIEG-CSKRTLISSLGSLGNLEELSILDCGISE 731 (889)
T ss_pred eecchh-HhHhhhhhhHHHHHHhHhhhhcc-cccceeecccccccCcceEEEEcCCCch
Confidence 533332 1111122222222 222222 2223344456667777777777776654
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.45 E-value=4.6e-15 Score=152.14 Aligned_cols=254 Identities=23% Similarity=0.249 Sum_probs=143.7
Q ss_pred EEecCCcCc-CcCCcccCCCCCCcEEEcCCCCcc-----ccCccccCCCCCcEEeccCCCCCCCCcccCCCCCCCCEEEe
Q 007237 71 LILSGCLKL-RKFPHVVGSMECLQELLLDGTDIK-----ELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKL 144 (611)
Q Consensus 71 L~Ls~~~~~-~~lp~~l~~l~~L~~L~L~~~~i~-----~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L 144 (611)
|+|..+... ...+..+..+.+|++|+++++.+. .++..+...++|++|+++++..- ..+
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~-~~~-------------- 67 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETG-RIP-------------- 67 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccC-Ccc--------------
Confidence 555555554 344455556666777777777663 34455555556666666554321 100
Q ss_pred cCCCCCcccccccCCCCCCCEEeecCccCCC-cCcccCCC---CCCCEEeccCCcCCc----ccccCccCC-CCCCEEEe
Q 007237 145 SGCSKLKKFPQIVTTMEDLSELNLDGTSITE-VPSSIELL---PGLELLNLNDCKNFA----RVPSSINGL-KSLKTLNL 215 (611)
Q Consensus 145 ~~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~-l~~~l~~l---~~L~~L~L~~~~~~~----~lp~~i~~l-~~L~~L~l 215 (611)
.....++..+..+++|++|+++++.+.. .+..+..+ ++|++|++++|.... .+...+..+ ++|+.|++
T Consensus 68 ---~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L 144 (319)
T cd00116 68 ---RGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVL 144 (319)
T ss_pred ---hHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEc
Confidence 0011223334445555555555555542 22222222 447777777766542 223344556 78999999
Q ss_pred cCCCCCc----ccCcccCCCCCccEEeccCCCccc-----CCccccccCCCcEEEcCCCCCCCCCCcccccccccccCCc
Q 007237 216 SGCCKLE----NVPDTLGQVESLEELDISETAVRR-----PPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKS 286 (611)
Q Consensus 216 ~~c~~l~----~~p~~l~~l~~L~~L~l~~~~~~~-----~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~ 286 (611)
++|.... .++..+..+++|+.|++++|.+.. ++..+...++|+.|++++|.....
T Consensus 145 ~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~---------------- 208 (319)
T cd00116 145 GRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDE---------------- 208 (319)
T ss_pred CCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChH----------------
Confidence 9987652 234456667788899998887762 233344556888888888752210
Q ss_pred cchhhccCCCCCCCCCCCEEeccCCCCCCCCCCCCCC----CCCCCCEEEcCCCCCC-----cCCcccccCCCcCeeecc
Q 007237 287 SCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIG----NLHSLNELYLSKNNFV-----TLPASINSLLNLKELEME 357 (611)
Q Consensus 287 ~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~~~~l~----~l~~L~~L~L~~n~l~-----~lp~~i~~l~~L~~L~L~ 357 (611)
........+..+++|++|++++|.+.+..+..... ..+.|+.|++++|.++ .+...+..+++|++++++
T Consensus 209 --~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~ 286 (319)
T cd00116 209 --GASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLR 286 (319)
T ss_pred --HHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECC
Confidence 00001112456678888888888775322211111 2467888888888775 344455666778888887
Q ss_pred ccc
Q 007237 358 DCK 360 (611)
Q Consensus 358 ~c~ 360 (611)
+|.
T Consensus 287 ~N~ 289 (319)
T cd00116 287 GNK 289 (319)
T ss_pred CCC
Confidence 775
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.41 E-value=4.6e-15 Score=145.26 Aligned_cols=272 Identities=19% Similarity=0.200 Sum_probs=171.1
Q ss_pred ccccccCccccccCccccCCCccEEEecCCcCcCcCCcccCCCCCCcEEEcCCCCcccc-CccccCCCCCcEEeccCCCC
Q 007237 47 TKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKEL-PLSIEHLFGLVQLTLNDCKN 125 (611)
Q Consensus 47 ~~l~~i~~s~~~l~~L~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~c~~ 125 (611)
..+++||..+ .+.-..+.|..|.+...-|..|+.+++||.|||+.|+|+.| |..|..+.+|.+|-+.+++.
T Consensus 56 ~GL~eVP~~L--------P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~Nk 127 (498)
T KOG4237|consen 56 KGLTEVPANL--------PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNK 127 (498)
T ss_pred CCcccCcccC--------CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCc
Confidence 3566666543 34667788888887777777899999999999999999976 56888888888888888788
Q ss_pred CCCCccc-CCCCCCCCEEEecCCCCCcccccccCCCCCCCEEeecCccCCCcCc-ccCCCCCCCEEeccCCcCCcccccC
Q 007237 126 LSSLPVA-ISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPS-SIELLPGLELLNLNDCKNFARVPSS 203 (611)
Q Consensus 126 l~~lp~~-l~~l~~L~~L~L~~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~l~~-~l~~l~~L~~L~L~~~~~~~~lp~~ 203 (611)
++++|.. |++|.+|+.|.+.-|...-...+.+..+++|..|.+..|.+..++. ++..+..++.+.+..+...-
T Consensus 128 I~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~ic----- 202 (498)
T KOG4237|consen 128 ITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFIC----- 202 (498)
T ss_pred hhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccc-----
Confidence 8999865 7888899999888776666667788888999999999998888776 57888888888887665321
Q ss_pred ccCCCCCCEEEecCCCCCcccCcccCCCCCccEEeccCCCcccCCccccccC--CCcEEEcCCCCCCCCCCccccccccc
Q 007237 204 INGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMK--NLRTLSFSGCNGPPSSASWHLHLPFN 281 (611)
Q Consensus 204 i~~l~~L~~L~l~~c~~l~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~--~L~~L~l~~c~~~~~~~~~~~~~~~~ 281 (611)
.++++.+... ....|..++......-..+....+.++.+.-..+. .+..=-.+.|.
T Consensus 203 dCnL~wla~~-------~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~--------------- 260 (498)
T KOG4237|consen 203 DCNLPWLADD-------LAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDF--------------- 260 (498)
T ss_pred ccccchhhhH-------HhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccC---------------
Confidence 1222222211 11112222222222222222222222222111111 11000001111
Q ss_pred ccCCccchhhccCCC--CCCCCCCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCCcCCc-ccccCCCcCeeeccc
Q 007237 282 LMGKSSCLVALMLPS--LSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPA-SINSLLNLKELEMED 358 (611)
Q Consensus 282 ~~~~~~~~~~~~l~~--l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~-~i~~l~~L~~L~L~~ 358 (611)
.....|. |..+++|++|++++|.++ +.-+.++.....+++|.|.+|++..+.. .+..++.|+.|+|.+
T Consensus 261 --------~d~~cP~~cf~~L~~L~~lnlsnN~i~-~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~ 331 (498)
T KOG4237|consen 261 --------PDSICPAKCFKKLPNLRKLNLSNNKIT-RIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYD 331 (498)
T ss_pred --------cCCcChHHHHhhcccceEeccCCCccc-hhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecC
Confidence 0011111 666777777777777775 3445567777777777777777775554 356777777777777
Q ss_pred cccc
Q 007237 359 CKRL 362 (611)
Q Consensus 359 c~~L 362 (611)
++.-
T Consensus 332 N~it 335 (498)
T KOG4237|consen 332 NQIT 335 (498)
T ss_pred CeeE
Confidence 7633
No 24
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.28 E-value=2.5e-12 Score=145.36 Aligned_cols=252 Identities=26% Similarity=0.351 Sum_probs=168.4
Q ss_pred CCCCcEEEcCCCCccccCccccCCCCCcEEeccCCCC-CCCCccc-CCCCCCCCEEEecCCCCCcccccccCCCCCCCEE
Q 007237 89 MECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKN-LSSLPVA-ISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSEL 166 (611)
Q Consensus 89 l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~c~~-l~~lp~~-l~~l~~L~~L~L~~~~~l~~~p~~~~~l~~L~~L 166 (611)
....|.+.+.++.+..++....+. +|++|-+.++.. +..++.. |..++.|++|||++|..+..+|..++++.+|++|
T Consensus 522 ~~~~rr~s~~~~~~~~~~~~~~~~-~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL 600 (889)
T KOG4658|consen 522 WNSVRRMSLMNNKIEHIAGSSENP-KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL 600 (889)
T ss_pred hhheeEEEEeccchhhccCCCCCC-ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence 366788888888888777666544 798998888653 5555544 6779999999999999999999999999999999
Q ss_pred eecCccCCCcCcccCCCCCCCEEeccCCcCCcccccCccCCCCCCEEEecCCC--CCcccCcccCCCCCccEEeccCCCc
Q 007237 167 NLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCC--KLENVPDTLGQVESLEELDISETAV 244 (611)
Q Consensus 167 ~L~~~~i~~l~~~l~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~c~--~l~~~p~~l~~l~~L~~L~l~~~~~ 244 (611)
+++++.++.+|..++++..|.+|++..+.....+|..+..+.+|++|.+.+-. .....-..+..+++|+.+.+.....
T Consensus 601 ~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~ 680 (889)
T KOG4658|consen 601 DLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV 680 (889)
T ss_pred cccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh
Confidence 99999999999999999999999999988888887767779999999987643 1112223345566666666644433
Q ss_pred ccCCccccccCCCc----EEEcCCCCCCCCCCcccccccccccCCccchhhccCCCCCCCCCCCEEeccCCCCCCCCCCC
Q 007237 245 RRPPSSVFLMKNLR----TLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPS 320 (611)
Q Consensus 245 ~~~~~~~~~l~~L~----~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~~~ 320 (611)
.+...+..++.|. .+.+.+| .......++..+.+|+.|.+.+|.+.+..+ .
T Consensus 681 -~~~e~l~~~~~L~~~~~~l~~~~~-----------------------~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~-~ 735 (889)
T KOG4658|consen 681 -LLLEDLLGMTRLRSLLQSLSIEGC-----------------------SKRTLISSLGSLGNLEELSILDCGISEIVI-E 735 (889)
T ss_pred -HhHhhhhhhHHHHHHhHhhhhccc-----------------------ccceeecccccccCcceEEEEcCCCchhhc-c
Confidence 1111112222222 2221111 111223446677888888888887753211 1
Q ss_pred CC-----C-CCCCCCEEEcCCCCCCcCCcccccCCCcCeeecccccccCcCC
Q 007237 321 DI-----G-NLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKRLQFLP 366 (611)
Q Consensus 321 ~l-----~-~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp 366 (611)
.. . .++++..+.+.+|.....+.+..-.++|+.|.+.+|+.++.+.
T Consensus 736 ~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i 787 (889)
T KOG4658|consen 736 WEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDII 787 (889)
T ss_pred cccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCC
Confidence 10 1 1334444444455444555555666777777777777666554
No 25
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=1.1e-10 Score=116.54 Aligned_cols=204 Identities=25% Similarity=0.249 Sum_probs=115.0
Q ss_pred CCCCCCEEEecCCCCCcccc--cccCCCCCCCEEeecCccCCC---cCcccCCCCCCCEEeccCCcCCcccccC-ccCCC
Q 007237 135 SFQCLRNLKLSGCSKLKKFP--QIVTTMEDLSELNLDGTSITE---VPSSIELLPGLELLNLNDCKNFARVPSS-INGLK 208 (611)
Q Consensus 135 ~l~~L~~L~L~~~~~l~~~p--~~~~~l~~L~~L~L~~~~i~~---l~~~l~~l~~L~~L~L~~~~~~~~lp~~-i~~l~ 208 (611)
++.+|+.+.|.++. ....+ .....+++++.|+|++|-+.. +......+++|+.|+++.|+..-..... -..++
T Consensus 119 n~kkL~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 119 NLKKLREISLDNYR-VEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hHHhhhheeecCcc-ccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 34455555555432 11111 234455556666666554442 2223445566666666665543222211 12456
Q ss_pred CCCEEEecCCCCCcc-cCcccCCCCCccEEeccCCC-cccCCccccccCCCcEEEcCCCCCCCCCCcccccccccccCCc
Q 007237 209 SLKTLNLSGCCKLEN-VPDTLGQVESLEELDISETA-VRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKS 286 (611)
Q Consensus 209 ~L~~L~l~~c~~l~~-~p~~l~~l~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~ 286 (611)
+|+.|.+++|..... +...+..+|+|+.|++..|. +.........+..|+.|+|++|.....
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~---------------- 261 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDF---------------- 261 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccc----------------
Confidence 677777777665422 22234456777777777763 222222333456777777777663322
Q ss_pred cchhhccCCCCCCCCCCCEEeccCCCCCCCCCCCC-----CCCCCCCCEEEcCCCCCCcCCc--ccccCCCcCeeecccc
Q 007237 287 SCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSD-----IGNLHSLNELYLSKNNFVTLPA--SINSLLNLKELEMEDC 359 (611)
Q Consensus 287 ~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~~~~-----l~~l~~L~~L~L~~n~l~~lp~--~i~~l~~L~~L~L~~c 359 (611)
...+..+.++.|..|.++.|++.+-.+|+. ...+++|++|++..|++...+. .+..+++|+.|.+..+
T Consensus 262 -----~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n 336 (505)
T KOG3207|consen 262 -----DQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLN 336 (505)
T ss_pred -----ccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccc
Confidence 123346677888888888888876666655 5668889999999998876663 3556666676665544
Q ss_pred c
Q 007237 360 K 360 (611)
Q Consensus 360 ~ 360 (611)
+
T Consensus 337 ~ 337 (505)
T KOG3207|consen 337 Y 337 (505)
T ss_pred c
Confidence 3
No 26
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.95 E-value=1.7e-10 Score=109.59 Aligned_cols=133 Identities=29% Similarity=0.354 Sum_probs=75.8
Q ss_pred CCCCEEeecCccCCCcCcccCCCCCCCEEeccCCcCCcccccCccCCCCCCEEEecCCCCCcccCcccCCCCCccEEecc
Q 007237 161 EDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDIS 240 (611)
Q Consensus 161 ~~L~~L~L~~~~i~~l~~~l~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~c~~l~~~p~~l~~l~~L~~L~l~ 240 (611)
+.|++++|++|.|+.+..++.-.+.++.|+++.|..... ..+..+++|+.||++
T Consensus 284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v--------------------------~nLa~L~~L~~LDLS 337 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTV--------------------------QNLAELPQLQLLDLS 337 (490)
T ss_pred hhhhhccccccchhhhhhhhhhccceeEEeccccceeee--------------------------hhhhhcccceEeecc
Confidence 345566666666666665555555555555555443221 124445566666666
Q ss_pred CCCcccCCccccccCCCcEEEcCCCCCCCCCCcccccccccccCCccchhhccCCCCCCCCCCCEEeccCCCCCCCCCCC
Q 007237 241 ETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPS 320 (611)
Q Consensus 241 ~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~~~ 320 (611)
+|.+.++..+-..+-++++|.+++|.. ..+..+..+.+|..||+++|+|.+-.-..
T Consensus 338 ~N~Ls~~~Gwh~KLGNIKtL~La~N~i------------------------E~LSGL~KLYSLvnLDl~~N~Ie~ldeV~ 393 (490)
T KOG1259|consen 338 GNLLAECVGWHLKLGNIKTLKLAQNKI------------------------ETLSGLRKLYSLVNLDLSSNQIEELDEVN 393 (490)
T ss_pred cchhHhhhhhHhhhcCEeeeehhhhhH------------------------hhhhhhHhhhhheeccccccchhhHHHhc
Confidence 666555555555566666666666541 11222455666777777777764433345
Q ss_pred CCCCCCCCCEEEcCCCCCCcCCc
Q 007237 321 DIGNLHSLNELYLSKNNFVTLPA 343 (611)
Q Consensus 321 ~l~~l~~L~~L~L~~n~l~~lp~ 343 (611)
.++++|.|+.+.|.+|.+..+|+
T Consensus 394 ~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 394 HIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred ccccccHHHHHhhcCCCccccch
Confidence 56667777777777776665554
No 27
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=7.7e-11 Score=117.54 Aligned_cols=207 Identities=21% Similarity=0.222 Sum_probs=135.7
Q ss_pred cCCCCCcEEeccCCCCCCCCc--ccCCCCCCCCEEEecCCCCC--cccccccCCCCCCCEEeecCccCCCcCcc--cCCC
Q 007237 110 EHLFGLVQLTLNDCKNLSSLP--VAISSFQCLRNLKLSGCSKL--KKFPQIVTTMEDLSELNLDGTSITEVPSS--IELL 183 (611)
Q Consensus 110 ~~l~~L~~L~L~~c~~l~~lp--~~l~~l~~L~~L~L~~~~~l--~~~p~~~~~l~~L~~L~L~~~~i~~l~~~--l~~l 183 (611)
.++.+|+...|++|. ....+ .....+++++.|||++|-.- ..+-.....+++|+.|+++.|.+...-++ -..+
T Consensus 118 sn~kkL~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYR-VEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCcc-ccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 455666666666643 33333 13455777777777775332 23345666778888888888776643332 2356
Q ss_pred CCCCEEeccCCcCCcc-cccCccCCCCCCEEEecCCCCCcccCcccCCCCCccEEeccCCCcccCC--ccccccCCCcEE
Q 007237 184 PGLELLNLNDCKNFAR-VPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPP--SSVFLMKNLRTL 260 (611)
Q Consensus 184 ~~L~~L~L~~~~~~~~-lp~~i~~l~~L~~L~l~~c~~l~~~p~~l~~l~~L~~L~l~~~~~~~~~--~~~~~l~~L~~L 260 (611)
++|+.|.++.|..... +......+++|+.|++.+|...........-+..|+.|+|++|.+...+ .....++.|+.|
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence 7888888888876522 2222456788888888887533222222334567888999988888766 556778888888
Q ss_pred EcCCCCCCCCCCcccccccccccCCccchhhccCCC------CCCCCCCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcC
Q 007237 261 SFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPS------LSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLS 334 (611)
Q Consensus 261 ~l~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~L~ 334 (611)
+++.|.... ...|+ ...+++|+.|++..|++.+-.....+..+++|+.|.+.
T Consensus 277 nls~tgi~s----------------------i~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~ 334 (505)
T KOG3207|consen 277 NLSSTGIAS----------------------IAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRIT 334 (505)
T ss_pred hccccCcch----------------------hcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcc
Confidence 888876221 11122 35678999999999999764455567778888999888
Q ss_pred CCCCC
Q 007237 335 KNNFV 339 (611)
Q Consensus 335 ~n~l~ 339 (611)
+|.+.
T Consensus 335 ~n~ln 339 (505)
T KOG3207|consen 335 LNYLN 339 (505)
T ss_pred ccccc
Confidence 88766
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.92 E-value=1.8e-09 Score=114.21 Aligned_cols=192 Identities=33% Similarity=0.497 Sum_probs=154.2
Q ss_pred EEEecCCcCcCcCCcccCCCCCCcEEEcCCCCccccCccccCCC-CCcEEeccCCCCCCCCcccCCCCCCCCEEEecCCC
Q 007237 70 ILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLF-GLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCS 148 (611)
Q Consensus 70 ~L~Ls~~~~~~~lp~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~-~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~ 148 (611)
.+++.++..... ...+..+..++.|++.++.+.+++.....+. +|+.|++++ +.+..+|..++.+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~-N~i~~l~~~~~~l~~L~~L~l~~N- 173 (394)
T COG4886 97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSD-NKIESLPSPLRNLPNLKNLDLSFN- 173 (394)
T ss_pred eeeccccccccC-chhhhcccceeEEecCCcccccCccccccchhhcccccccc-cchhhhhhhhhccccccccccCCc-
Confidence 466666554222 2333455789999999999999999998885 999999998 557888767888999999999996
Q ss_pred CCcccccccCCCCCCCEEeecCccCCCcCcccCCCCCCCEEeccCCcCCcccccCccCCCCCCEEEecCCCCCcccCccc
Q 007237 149 KLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTL 228 (611)
Q Consensus 149 ~l~~~p~~~~~l~~L~~L~L~~~~i~~l~~~l~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~c~~l~~~p~~l 228 (611)
.+..+|......++|+.|+++++.+..+|..+..+..|+.|.+++|. ....+..+..++++..+.+.++ ....++..+
T Consensus 174 ~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~l~~n-~~~~~~~~~ 251 (394)
T COG4886 174 DLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGLELSNN-KLEDLPESI 251 (394)
T ss_pred hhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCc-ceecchhhhhcccccccccCCc-eeeeccchh
Confidence 45666666667899999999999999999988788889999999875 3344556777888888886554 344457788
Q ss_pred CCCCCccEEeccCCCcccCCccccccCCCcEEEcCCCCC
Q 007237 229 GQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNG 267 (611)
Q Consensus 229 ~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~ 267 (611)
+.+++++.|++++|.+..++. +..+.+++.|+++++..
T Consensus 252 ~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~ 289 (394)
T COG4886 252 GNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSL 289 (394)
T ss_pred ccccccceecccccccccccc-ccccCccCEEeccCccc
Confidence 889999999999999999888 88899999999999874
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.91 E-value=2.4e-09 Score=113.31 Aligned_cols=192 Identities=27% Similarity=0.395 Sum_probs=89.3
Q ss_pred EEccCCCCCCcCCCCCCCcccccccccccccccccCccccccCccccC-CCccEEEecCCcCcCcCCcccCCCCCCcEEE
Q 007237 18 MKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFV-ESLKILILSGCLKLRKFPHVVGSMECLQELL 96 (611)
Q Consensus 18 L~Ls~~~~l~~~~~~~~~~~L~~L~L~~c~~l~~i~~s~~~l~~L~~l-~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~ 96 (611)
++++.+...........+++++.|++.++ .+.++++..+. + ++|++|+++++.+. .+|..++.+++|+.|+
T Consensus 98 l~~~~~~~~~~~~~~~~~~~l~~L~l~~n-~i~~i~~~~~~------~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~ 169 (394)
T COG4886 98 LDLNLNRLRSNISELLELTNLTSLDLDNN-NITDIPPLIGL------LKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLD 169 (394)
T ss_pred eeccccccccCchhhhcccceeEEecCCc-ccccCcccccc------chhhcccccccccchh-hhhhhhhccccccccc
Confidence 44444433233333333445555555443 44444433222 2 24555555554332 2334445555555555
Q ss_pred cCCCCccccCccccCCCCCcEEeccCCCCCCCCcccCCCCCCCCEEEecCCCCCcccccccCCCCCCCEEeecCccCCCc
Q 007237 97 LDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEV 176 (611)
Q Consensus 97 L~~~~i~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~l 176 (611)
+++|++.++|...+.+++|+.|++++ ..+..+|..+.....|++|.++++. ....+..+.++.++..+.+.++.+..+
T Consensus 170 l~~N~l~~l~~~~~~~~~L~~L~ls~-N~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~l~~n~~~~~ 247 (394)
T COG4886 170 LSFNDLSDLPKLLSNLSNLNNLDLSG-NKISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGLELSNNKLEDL 247 (394)
T ss_pred cCCchhhhhhhhhhhhhhhhheeccC-CccccCchhhhhhhhhhhhhhcCCc-ceecchhhhhcccccccccCCceeeec
Confidence 55555555555544555555555555 2344555443334445555555432 233334444445555555555555554
Q ss_pred CcccCCCCCCCEEeccCCcCCcccccCccCCCCCCEEEecCCCCC
Q 007237 177 PSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKL 221 (611)
Q Consensus 177 ~~~l~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~c~~l 221 (611)
+..++.++.++.|++++|.... ++. ++.+.+++.|+++++...
T Consensus 248 ~~~~~~l~~l~~L~~s~n~i~~-i~~-~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 248 PESIGNLSNLETLDLSNNQISS-ISS-LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred cchhccccccceeccccccccc-ccc-ccccCccCEEeccCcccc
Confidence 5555555555555555443322 222 444555555555554443
No 30
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.72 E-value=6.7e-10 Score=114.26 Aligned_cols=57 Identities=28% Similarity=0.454 Sum_probs=38.8
Q ss_pred CCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCCcCCccc---ccCCCcCeeeccccc
Q 007237 302 SLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASI---NSLLNLKELEMEDCK 360 (611)
Q Consensus 302 ~L~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~i---~~l~~L~~L~L~~c~ 360 (611)
.|.+||++.|+++ .+|..+.+|..|++|.|.+|.+.+=|..| ++..=-++|++.-|.
T Consensus 212 pLi~lDfScNkis--~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 212 PLIRLDFSCNKIS--YLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred ceeeeecccCcee--ecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhcc
Confidence 3666777777774 37777777777888888777777766643 344455667777663
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.71 E-value=2.6e-09 Score=101.67 Aligned_cols=201 Identities=22% Similarity=0.289 Sum_probs=110.9
Q ss_pred cccCCCCCCCCEEEecCCCCCcccccccCCCCCCCEEeecCccCCCcCcccCCCCCCCEEeccC-CcCCcccccCccCCC
Q 007237 130 PVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLND-CKNFARVPSSINGLK 208 (611)
Q Consensus 130 p~~l~~l~~L~~L~L~~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~l~~~l~~l~~L~~L~L~~-~~~~~~lp~~i~~l~ 208 (611)
|..+.-+++|+.+.++.|.- +.+-+....-+.|+++....+.+...|..+. ...+..+.-.. ....+..-..+...+
T Consensus 207 ~f~l~~f~~l~~~~~s~~~~-~~i~~~~~~kptl~t~~v~~s~~~~~~~l~p-e~~~~D~~~~E~~t~~G~~~~~~dTWq 284 (490)
T KOG1259|consen 207 SFNLNAFRNLKTLKFSALST-ENIVDIELLKPTLQTICVHNTTIQDVPSLLP-ETILADPSGSEPSTSNGSALVSADTWQ 284 (490)
T ss_pred ccchHHhhhhheeeeeccch-hheeceeecCchhheeeeecccccccccccc-hhhhcCccCCCCCccCCceEEecchHh
Confidence 33344466777777776642 2222222334556666666665554443211 11111111110 011112222233445
Q ss_pred CCCEEEecCCCCCcccCcccCCCCCccEEeccCCCcccCCccccccCCCcEEEcCCCCCCCCCCcccccccccccCCccc
Q 007237 209 SLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSC 288 (611)
Q Consensus 209 ~L~~L~l~~c~~l~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~ 288 (611)
.|+++++++|. +..+.+++.-+|.++.|+++.|.+..+-. +..+++|+.|++++|... ....|
T Consensus 285 ~LtelDLS~N~-I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls-~~~Gw-------------- 347 (490)
T KOG1259|consen 285 ELTELDLSGNL-ITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLA-ECVGW-------------- 347 (490)
T ss_pred hhhhccccccc-hhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhH-hhhhh--------------
Confidence 67777777754 34455566666777777777777776554 666777777777776511 11111
Q ss_pred hhhccCCCCCCCCCCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCCcCCc--ccccCCCcCeeeccccc
Q 007237 289 LVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPA--SINSLLNLKELEMEDCK 360 (611)
Q Consensus 289 ~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~--~i~~l~~L~~L~L~~c~ 360 (611)
-..+-+.++|.++.|.+. -..+++.+-+|..||+++|++..+.+ +|+++|.|+.+.+.+++
T Consensus 348 --------h~KLGNIKtL~La~N~iE---~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 348 --------HLKLGNIKTLKLAQNKIE---TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred --------HhhhcCEeeeehhhhhHh---hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 112346677777777663 23456677777888888887775443 57777777777777776
No 32
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.71 E-value=4.1e-10 Score=109.58 Aligned_cols=115 Identities=23% Similarity=0.303 Sum_probs=68.9
Q ss_pred cCCCCCccEEeccCCCccc-----CCccccccCCCcEEEcCCCCCCCCCCcccccccccccCCccchhhccCCCCCCCCC
Q 007237 228 LGQVESLEELDISETAVRR-----PPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRS 302 (611)
Q Consensus 228 l~~l~~L~~L~l~~~~~~~-----~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~ 302 (611)
+...+.|+.+.+..|.|.. +...+..+++|+.|++.+|....- ...... ..+..+++
T Consensus 181 ~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~e---------------gs~~La---kaL~s~~~ 242 (382)
T KOG1909|consen 181 FQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLE---------------GSVALA---KALSSWPH 242 (382)
T ss_pred HHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhH---------------HHHHHH---HHhcccch
Confidence 4445566666666665541 123345566777777766541110 000111 12556678
Q ss_pred CCEEeccCCCCCCCCCC---CCC-CCCCCCCEEEcCCCCCC-----cCCcccccCCCcCeeeccccc
Q 007237 303 LTKLDLSDCGLGEGAIP---SDI-GNLHSLNELYLSKNNFV-----TLPASINSLLNLKELEMEDCK 360 (611)
Q Consensus 303 L~~L~Ls~~~l~~~~~~---~~l-~~l~~L~~L~L~~n~l~-----~lp~~i~~l~~L~~L~L~~c~ 360 (611)
|+.|++++|.+....-- ..+ ...|+|+.|.+.+|.++ .+-.++...+.|+.|+|++|+
T Consensus 243 L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 243 LRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred heeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 88888888887643221 112 34788999999999877 344456678889999998887
No 33
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.66 E-value=5.5e-10 Score=108.70 Aligned_cols=246 Identities=20% Similarity=0.222 Sum_probs=139.2
Q ss_pred CCCcccEEEccCCCCCCcC-----CCCCCCccccccccccccc---ccccCccccc-cCccccCCCccEEEecCCcCcCc
Q 007237 11 HLNMLKVMKLSHSENLIKT-----PDFTEAPNLEELYLEGCTK---LRKVHPSLLL-HNKLIFVESLKILILSGCLKLRK 81 (611)
Q Consensus 11 ~l~~L~~L~Ls~~~~l~~~-----~~~~~~~~L~~L~L~~c~~---l~~i~~s~~~-l~~L~~l~~L~~L~Ls~~~~~~~ 81 (611)
.+..++.|+||+|.+-.+. +.+.+.++|+..++++.-- ..++|+.+-. ...|..+++|++|+||+|.+...
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~ 107 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK 107 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence 4556677777777654442 2345556666666665310 1123322211 12333445666666666655433
Q ss_pred CCc----ccCCCCCCcEEEcCCCCccccCcc-ccCCCCCcEEeccCCCCCCCCcccCCCCCCCCEEEecCCCCCc----c
Q 007237 82 FPH----VVGSMECLQELLLDGTDIKELPLS-IEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLK----K 152 (611)
Q Consensus 82 lp~----~l~~l~~L~~L~L~~~~i~~lp~~-~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~~l~----~ 152 (611)
.+. .+..+..|+.|.|.++++...... ++. .|..|. .-..+..-+.|+++...+|..-. .
T Consensus 108 g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~---------~~kk~~~~~~Lrv~i~~rNrlen~ga~~ 176 (382)
T KOG1909|consen 108 GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA---------VNKKAASKPKLRVFICGRNRLENGGATA 176 (382)
T ss_pred chHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH---------HHhccCCCcceEEEEeeccccccccHHH
Confidence 222 233344455555555444311100 000 000000 00113345778888887764332 2
Q ss_pred cccccCCCCCCCEEeecCccCCC-----cCcccCCCCCCCEEeccCCcCCcc----cccCccCCCCCCEEEecCCCCCcc
Q 007237 153 FPQIVTTMEDLSELNLDGTSITE-----VPSSIELLPGLELLNLNDCKNFAR----VPSSINGLKSLKTLNLSGCCKLEN 223 (611)
Q Consensus 153 ~p~~~~~l~~L~~L~L~~~~i~~-----l~~~l~~l~~L~~L~L~~~~~~~~----lp~~i~~l~~L~~L~l~~c~~l~~ 223 (611)
+...+...+.|+.+.+..|.|.. +...+..+++|++|+|++|.+... +...+..+++|+.|++++|..-..
T Consensus 177 ~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~ 256 (382)
T KOG1909|consen 177 LAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENE 256 (382)
T ss_pred HHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccc
Confidence 34556667888888888887752 334578889999999998876533 344566778899999999865433
Q ss_pred cC----ccc-CCCCCccEEeccCCCccc-----CCccccccCCCcEEEcCCCCC
Q 007237 224 VP----DTL-GQVESLEELDISETAVRR-----PPSSVFLMKNLRTLSFSGCNG 267 (611)
Q Consensus 224 ~p----~~l-~~l~~L~~L~l~~~~~~~-----~~~~~~~l~~L~~L~l~~c~~ 267 (611)
-. ..+ ...|+|+.|.+.+|.++. +...+...+.|+.|+|++|+.
T Consensus 257 Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 257 GAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 21 122 236889999999998872 233445578899999999873
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.64 E-value=1.3e-08 Score=92.91 Aligned_cols=102 Identities=25% Similarity=0.366 Sum_probs=23.1
Q ss_pred CCcEEEcCCCCccccCcccc-CCCCCcEEeccCCCCCCCCcccCCCCCCCCEEEecCCCCCccccccc-CCCCCCCEEee
Q 007237 91 CLQELLLDGTDIKELPLSIE-HLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIV-TTMEDLSELNL 168 (611)
Q Consensus 91 ~L~~L~L~~~~i~~lp~~~~-~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~~-~~l~~L~~L~L 168 (611)
.++.|+|.++.|+.+. .++ .+.+|+.|++++|. ++.++. +..++.|+.|++++|... .+.+.+ ..+++|++|++
T Consensus 20 ~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~-I~~l~~-l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 20 KLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQ-ITKLEG-LPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELYL 95 (175)
T ss_dssp -----------------S--TT-TT--EEE-TTS---S--TT-----TT--EEE--SS----S-CHHHHHH-TT--EEE-
T ss_pred cccccccccccccccc-chhhhhcCCCEEECCCCC-CccccC-ccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEEC
Confidence 3444444444444443 222 34455555555432 334432 444555555555554332 222222 23555555555
Q ss_pred cCccCCCcCc--ccCCCCCCCEEeccCCcC
Q 007237 169 DGTSITEVPS--SIELLPGLELLNLNDCKN 196 (611)
Q Consensus 169 ~~~~i~~l~~--~l~~l~~L~~L~L~~~~~ 196 (611)
++|.|.++.. .+..+++|+.|++.+|..
T Consensus 96 ~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 96 SNNKISDLNELEPLSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp TTS---SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred cCCcCCChHHhHHHHcCCCcceeeccCCcc
Confidence 5555554322 234455555555555443
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.61 E-value=2.5e-08 Score=91.09 Aligned_cols=101 Identities=25% Similarity=0.332 Sum_probs=30.1
Q ss_pred CCCcEEEcCCCCccccCccccCCCCCcEEeccCCCCCCCCcccC-CCCCCCCEEEecCCCCCc-ccccccCCCCCCCEEe
Q 007237 90 ECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAI-SSFQCLRNLKLSGCSKLK-KFPQIVTTMEDLSELN 167 (611)
Q Consensus 90 ~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l-~~l~~L~~L~L~~~~~l~-~~p~~~~~l~~L~~L~ 167 (611)
.+|+.|++++|.|+.++ .+..+++|++|++++| .+++++..+ ..+++|++|++++|..-. .--..+..+++|+.|+
T Consensus 42 ~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N-~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~ 119 (175)
T PF14580_consen 42 DKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNN-RISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLS 119 (175)
T ss_dssp TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE
T ss_pred cCCCEEECCCCCCcccc-CccChhhhhhcccCCC-CCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceee
Confidence 34444444444444443 2334444444444442 233333222 124455555555443211 0112344566667777
Q ss_pred ecCccCCCcCc----ccCCCCCCCEEecc
Q 007237 168 LDGTSITEVPS----SIELLPGLELLNLN 192 (611)
Q Consensus 168 L~~~~i~~l~~----~l~~l~~L~~L~L~ 192 (611)
+.+|.++..+. .+..+|+|+.||-.
T Consensus 120 L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 120 LEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp -TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred ccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 77666654332 14445566666543
No 36
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.60 E-value=1.7e-09 Score=111.32 Aligned_cols=191 Identities=24% Similarity=0.381 Sum_probs=150.5
Q ss_pred cEEEecCCcCcCcCCcccCCCCCCcEEEcCCCCccccCccccCCCCCcEEeccCCCCCCCCcccCCCCCCCCEEEecCCC
Q 007237 69 KILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCS 148 (611)
Q Consensus 69 ~~L~Ls~~~~~~~lp~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~ 148 (611)
...|++.|.+ ..+|..+..+..|+.+.++.|.+..+|..+.++..|..|+++. +.+..+|..++. --|+.|.+++ +
T Consensus 78 ~~aDlsrNR~-~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~-NqlS~lp~~lC~-lpLkvli~sN-N 153 (722)
T KOG0532|consen 78 VFADLSRNRF-SELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSS-NQLSHLPDGLCD-LPLKVLIVSN-N 153 (722)
T ss_pred hhhhcccccc-ccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhcc-chhhcCChhhhc-CcceeEEEec-C
Confidence 3455666543 4567777778888888889999999999999999999999988 457788887774 4588888887 4
Q ss_pred CCcccccccCCCCCCCEEeecCccCCCcCcccCCCCCCCEEeccCCcCCcccccCccCCCCCCEEEecCCCCCcccCccc
Q 007237 149 KLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTL 228 (611)
Q Consensus 149 ~l~~~p~~~~~l~~L~~L~L~~~~i~~l~~~l~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~c~~l~~~p~~l 228 (611)
+++.+|+.++....|..|+.+.|.+..+|+.++.+.+|+.|+++.|+. ..+|..++.| .|..|+++. +++..+|-.|
T Consensus 154 kl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l-~~lp~El~~L-pLi~lDfSc-Nkis~iPv~f 230 (722)
T KOG0532|consen 154 KLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHL-EDLPEELCSL-PLIRLDFSC-NKISYLPVDF 230 (722)
T ss_pred ccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhh-hhCCHHHhCC-ceeeeeccc-Cceeecchhh
Confidence 678888888888889999999999999999999999999999988654 4566666643 588888875 5677888889
Q ss_pred CCCCCccEEeccCCCcccCCccccc---cCCCcEEEcCCCC
Q 007237 229 GQVESLEELDISETAVRRPPSSVFL---MKNLRTLSFSGCN 266 (611)
Q Consensus 229 ~~l~~L~~L~l~~~~~~~~~~~~~~---l~~L~~L~l~~c~ 266 (611)
.+|+.|++|.|.+|.++..|..+.. ..--++|+...|.
T Consensus 231 r~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 231 RKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred hhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhcc
Confidence 9999999999999999988877654 3344677777774
No 37
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.57 E-value=6e-10 Score=110.73 Aligned_cols=87 Identities=24% Similarity=0.258 Sum_probs=46.6
Q ss_pred CCCCCCEEeccCCcCCccccc--CccCCCCCCEEEecCCCCCcccC--cccCCCCCccEEeccCCCcc---cCCcccccc
Q 007237 182 LLPGLELLNLNDCKNFARVPS--SINGLKSLKTLNLSGCCKLENVP--DTLGQVESLEELDISETAVR---RPPSSVFLM 254 (611)
Q Consensus 182 ~l~~L~~L~L~~~~~~~~lp~--~i~~l~~L~~L~l~~c~~l~~~p--~~l~~l~~L~~L~l~~~~~~---~~~~~~~~l 254 (611)
.+..|+.|..++|...+..+- -..+..+|+.|.+.+|..+.... ..-.+.+.|+.+++.++... .+.....++
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C 371 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC 371 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence 456677777777665443221 13455677777777776544321 11134566666666655433 123333445
Q ss_pred CCCcEEEcCCCCCC
Q 007237 255 KNLRTLSFSGCNGP 268 (611)
Q Consensus 255 ~~L~~L~l~~c~~~ 268 (611)
+.|+.|.+++|...
T Consensus 372 ~~lr~lslshce~i 385 (483)
T KOG4341|consen 372 PRLRVLSLSHCELI 385 (483)
T ss_pred chhccCChhhhhhh
Confidence 66666666665533
No 38
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.52 E-value=5.7e-07 Score=92.13 Aligned_cols=62 Identities=23% Similarity=0.517 Sum_probs=39.0
Q ss_pred CCCCCEEeecCccCCCcCcccCCCCCCCEEeccCCcCCcccccCccCCCCCCEEEecCCCCCcccCc
Q 007237 160 MEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPD 226 (611)
Q Consensus 160 l~~L~~L~L~~~~i~~l~~~l~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~c~~l~~~p~ 226 (611)
+.+++.|++++|.++.+|. -..+|+.|.+++|..+..+|..+ .++|+.|.+++|..+..+|.
T Consensus 51 ~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~ 112 (426)
T PRK15386 51 ARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE 112 (426)
T ss_pred hcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc
Confidence 4556666666666666662 23467777777777776666644 25677777777765555553
No 39
>PLN03150 hypothetical protein; Provisional
Probab=98.45 E-value=3.9e-07 Score=101.39 Aligned_cols=108 Identities=24% Similarity=0.323 Sum_probs=81.0
Q ss_pred CCcEEEcCCCCcc-ccCccccCCCCCcEEeccCCCCCCCCcccCCCCCCCCEEEecCCCCCcccccccCCCCCCCEEeec
Q 007237 91 CLQELLLDGTDIK-ELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLD 169 (611)
Q Consensus 91 ~L~~L~L~~~~i~-~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~~~~l~~L~~L~L~ 169 (611)
.++.|+|+++.+. .+|..++.+++|+.|+|++|.....+|..++.+++|+.|+|++|...+.+|+.++++++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 3677788887776 677778888888888888876666777777778888888888887777788888888888888888
Q ss_pred CccCC-CcCcccCCC-CCCCEEeccCCcCCc
Q 007237 170 GTSIT-EVPSSIELL-PGLELLNLNDCKNFA 198 (611)
Q Consensus 170 ~~~i~-~l~~~l~~l-~~L~~L~L~~~~~~~ 198 (611)
+|.++ .+|..+... .++..+++.+|..+.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCcccc
Confidence 88777 567666543 456677777765443
No 40
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=1.5e-09 Score=103.21 Aligned_cols=105 Identities=24% Similarity=0.284 Sum_probs=67.4
Q ss_pred CCCEEeecCccCC--CcCcccCCCCCCCEEeccCCcCCcccccCccCCCCCCEEEecCCCCCcccC--cccCCCCCccEE
Q 007237 162 DLSELNLDGTSIT--EVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVP--DTLGQVESLEEL 237 (611)
Q Consensus 162 ~L~~L~L~~~~i~--~l~~~l~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~c~~l~~~p--~~l~~l~~L~~L 237 (611)
.|++|+|+...|+ .+...+..+.+|+.|.+.+.+....+...|..-.+|+.|++++|+.+.... -.+.+++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 4778888887776 344456677888888888877777777777777888888888887765532 234566677777
Q ss_pred eccCCCccc-C-Ccccc-ccCCCcEEEcCCCC
Q 007237 238 DISETAVRR-P-PSSVF-LMKNLRTLSFSGCN 266 (611)
Q Consensus 238 ~l~~~~~~~-~-~~~~~-~l~~L~~L~l~~c~ 266 (611)
+++.|.... . ...+. --++|+.|+++||.
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~r 297 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYR 297 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhH
Confidence 776665441 1 11111 12455555665554
No 41
>PLN03150 hypothetical protein; Provisional
Probab=98.42 E-value=5e-07 Score=100.52 Aligned_cols=108 Identities=27% Similarity=0.404 Sum_probs=93.1
Q ss_pred CCCEEEecCCCCCcccccccCCCCCCCEEeecCccCC-CcCcccCCCCCCCEEeccCCcCCcccccCccCCCCCCEEEec
Q 007237 138 CLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSIT-EVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLS 216 (611)
Q Consensus 138 ~L~~L~L~~~~~l~~~p~~~~~l~~L~~L~L~~~~i~-~l~~~l~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~ 216 (611)
.++.|+|++|...+.+|..+..+++|+.|+|++|.+. .+|..++.+++|+.|++++|...+.+|..++.+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4788899998888888999999999999999999987 678889999999999999999988999999999999999999
Q ss_pred CCCCCcccCcccCCC-CCccEEeccCCCcc
Q 007237 217 GCCKLENVPDTLGQV-ESLEELDISETAVR 245 (611)
Q Consensus 217 ~c~~l~~~p~~l~~l-~~L~~L~l~~~~~~ 245 (611)
+|...+.+|..++.. .++..+++.+|...
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccc
Confidence 998888888887654 46778888887543
No 42
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.39 E-value=2.1e-06 Score=88.10 Aligned_cols=134 Identities=30% Similarity=0.559 Sum_probs=86.7
Q ss_pred CCCCCcEEEcCCCCccccCccccCCCCCcEEeccCCCCCCCCcccCCCCCCCCEEEecCCCCCcccccccCCCCCCCEEe
Q 007237 88 SMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELN 167 (611)
Q Consensus 88 ~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~~~~l~~L~~L~ 167 (611)
.+.+++.|+++++.++.+|. -..+|++|.+++|..+..+|..+ .++|+.|++++|..+..+|. +|+.|+
T Consensus 50 ~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe~L~ 118 (426)
T PRK15386 50 EARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVRSLE 118 (426)
T ss_pred HhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccceEE
Confidence 35677777777777777772 23468889999998888888755 46899999999877776664 467777
Q ss_pred ecCccCC---CcCcccCCCCCCCEEeccCCcCC--cccccCccCCCCCCEEEecCCCCCcccCcccCCCCCccEEeccCC
Q 007237 168 LDGTSIT---EVPSSIELLPGLELLNLNDCKNF--ARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISET 242 (611)
Q Consensus 168 L~~~~i~---~l~~~l~~l~~L~~L~L~~~~~~--~~lp~~i~~l~~L~~L~l~~c~~l~~~p~~l~~l~~L~~L~l~~~ 242 (611)
+.++... .+|. +|+.|.+.++... ..+|.. -.++|++|.+++|.... +|..+. .+|+.|+++.+
T Consensus 119 L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i~-LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 119 IKGSATDSIKNVPN------GLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNII-LPEKLP--ESLQSITLHIE 187 (426)
T ss_pred eCCCCCcccccCcc------hHhheeccccccccccccccc--cCCcccEEEecCCCccc-Cccccc--ccCcEEEeccc
Confidence 7765543 4443 4566666543211 111211 12578889988887553 343332 57888887665
Q ss_pred C
Q 007237 243 A 243 (611)
Q Consensus 243 ~ 243 (611)
.
T Consensus 188 ~ 188 (426)
T PRK15386 188 Q 188 (426)
T ss_pred c
Confidence 3
No 43
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.34 E-value=1.2e-08 Score=101.74 Aligned_cols=252 Identities=21% Similarity=0.328 Sum_probs=141.8
Q ss_pred cccEEEccCCCCCCcCC--C-CCCCcccccccccccccccccCccccccCccccCCCccEEEecCCcCcCc--CCcccCC
Q 007237 14 MLKVMKLSHSENLIKTP--D-FTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRK--FPHVVGS 88 (611)
Q Consensus 14 ~L~~L~Ls~~~~l~~~~--~-~~~~~~L~~L~L~~c~~l~~i~~s~~~l~~L~~l~~L~~L~Ls~~~~~~~--lp~~l~~ 88 (611)
.||.|.+.+++....-+ . ...+||++.|.+.+|..+++.. ... --+++++|+.|++..|..... +-.....
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s--~~s--la~~C~~l~~l~L~~c~~iT~~~Lk~la~g 214 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSS--LLS--LARYCRKLRHLNLHSCSSITDVSLKYLAEG 214 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHH--HHH--HHHhcchhhhhhhcccchhHHHHHHHHHHh
Confidence 46666666665443322 2 3457777777777776555421 111 112355555555555543311 1112334
Q ss_pred CCCCcEEEcCCCC-ccc--cCc--------------------------cccCCCCCcEEeccCCCCCCCCccc--CCCCC
Q 007237 89 MECLQELLLDGTD-IKE--LPL--------------------------SIEHLFGLVQLTLNDCKNLSSLPVA--ISSFQ 137 (611)
Q Consensus 89 l~~L~~L~L~~~~-i~~--lp~--------------------------~~~~l~~L~~L~L~~c~~l~~lp~~--l~~l~ 137 (611)
+++|++|+++.+. |+. +.. .-..+..+.++++.+|..+++.... -..+.
T Consensus 215 C~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~ 294 (483)
T KOG4341|consen 215 CRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCH 294 (483)
T ss_pred hhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhh
Confidence 5555555555432 110 111 1122333455555566555543311 13467
Q ss_pred CCCEEEecCCCCCcccc--cccCCCCCCCEEeecCcc-CCCc--CcccCCCCCCCEEeccCCcCCcc--cccCccCCCCC
Q 007237 138 CLRNLKLSGCSKLKKFP--QIVTTMEDLSELNLDGTS-ITEV--PSSIELLPGLELLNLNDCKNFAR--VPSSINGLKSL 210 (611)
Q Consensus 138 ~L~~L~L~~~~~l~~~p--~~~~~l~~L~~L~L~~~~-i~~l--~~~l~~l~~L~~L~L~~~~~~~~--lp~~i~~l~~L 210 (611)
.|+.|+.++|......+ ....+.++|+.|.+.+++ ++.. ...-.+.+.|+.+++.+|..... +-..-.+++.|
T Consensus 295 ~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~l 374 (483)
T KOG4341|consen 295 ALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRL 374 (483)
T ss_pred HhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchh
Confidence 78888888887764432 334556788888888764 3322 12235677888888887765432 22223467788
Q ss_pred CEEEecCCCCCccc-----CcccCCCCCccEEeccCCCcc--cCCccccccCCCcEEEcCCCCCCC
Q 007237 211 KTLNLSGCCKLENV-----PDTLGQVESLEELDISETAVR--RPPSSVFLMKNLRTLSFSGCNGPP 269 (611)
Q Consensus 211 ~~L~l~~c~~l~~~-----p~~l~~l~~L~~L~l~~~~~~--~~~~~~~~l~~L~~L~l~~c~~~~ 269 (611)
+.|.++.|....+. ...-..+..|+.+.++++... .....+..+++|+.+++.+|....
T Consensus 375 r~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vt 440 (483)
T KOG4341|consen 375 RVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVT 440 (483)
T ss_pred ccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhh
Confidence 88888888765543 333456678888888888765 445566778899999999887543
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=1.4e-08 Score=96.89 Aligned_cols=176 Identities=22% Similarity=0.212 Sum_probs=119.3
Q ss_pred CCcEEEcCCCCcc--ccCccccCCCCCcEEeccCCCCCCCCcccCCCCCCCCEEEecCCCCCcccc--cccCCCCCCCEE
Q 007237 91 CLQELLLDGTDIK--ELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFP--QIVTTMEDLSEL 166 (611)
Q Consensus 91 ~L~~L~L~~~~i~--~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p--~~~~~l~~L~~L 166 (611)
.|++|||+++.|+ .+-.-+..|.+|+.|.+.+...-..+-..+.+=.+|+.|++++|+.+.+.. -.+.++..|.+|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 5888999988887 555667788888888888865444455556667889999999988876543 456778888888
Q ss_pred eecCccCCC--cCcccCC-CCCCCEEeccCCcCCcc---cccCccCCCCCCEEEecCCCCCcc-cCcccCCCCCccEEec
Q 007237 167 NLDGTSITE--VPSSIEL-LPGLELLNLNDCKNFAR---VPSSINGLKSLKTLNLSGCCKLEN-VPDTLGQVESLEELDI 239 (611)
Q Consensus 167 ~L~~~~i~~--l~~~l~~-l~~L~~L~L~~~~~~~~---lp~~i~~l~~L~~L~l~~c~~l~~-~p~~l~~l~~L~~L~l 239 (611)
+++.|.+.. +...+.+ -++|+.|++++|...-. +..-...+++|..|++++|..+.. ....+.+++.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 888886652 1111221 25788888888754211 112234678888888888876643 2344567788888888
Q ss_pred cCCCcc--cCCccccccCCCcEEEcCCCC
Q 007237 240 SETAVR--RPPSSVFLMKNLRTLSFSGCN 266 (611)
Q Consensus 240 ~~~~~~--~~~~~~~~l~~L~~L~l~~c~ 266 (611)
+.|... +..-.+...++|.+|++.||-
T Consensus 346 sRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 346 SRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred hhhcCCChHHeeeeccCcceEEEEecccc
Confidence 877543 222344567888888888875
No 45
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.15 E-value=2.3e-06 Score=63.94 Aligned_cols=56 Identities=23% Similarity=0.282 Sum_probs=22.7
Q ss_pred CccEEEecCCcCcCcCCcccCCCCCCcEEEcCCCCccccCc-cccCCCCCcEEeccC
Q 007237 67 SLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPL-SIEHLFGLVQLTLND 122 (611)
Q Consensus 67 ~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~ 122 (611)
+|++|++++|.+...-+..+..+++|++|++++|.++.++. .+..+++|++|++++
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~ 58 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSN 58 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcC
Confidence 34444444443332222344444444444444444444332 333444444444443
No 46
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.10 E-value=4.4e-07 Score=96.36 Aligned_cols=127 Identities=24% Similarity=0.283 Sum_probs=75.1
Q ss_pred CCCccEEEecCCcCcCcCCcccCCCCCCcEEEcCCCCccccCccccCCCCCcEEeccCCCCCCCCcccCCCCCCCCEEEe
Q 007237 65 VESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKL 144 (611)
Q Consensus 65 l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L 144 (611)
+..++.+++..+.+.. .-..+..+.+|+.|++.++.|+.+...+..+++|++|+++++ .++++.. +..++.|+.|++
T Consensus 71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N-~I~~i~~-l~~l~~L~~L~l 147 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFN-KITKLEG-LSTLTLLKELNL 147 (414)
T ss_pred hHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhcccchhhhhcchheecccc-ccccccc-hhhccchhhhee
Confidence 4455555555544332 233356677777777777777777666777777777777774 3555543 455666777777
Q ss_pred cCCCCCcccccccCCCCCCCEEeecCccCCCcCcc-cCCCCCCCEEeccCCcC
Q 007237 145 SGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSS-IELLPGLELLNLNDCKN 196 (611)
Q Consensus 145 ~~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~l~~~-l~~l~~L~~L~L~~~~~ 196 (611)
++|.... + ..+..++.|+.+++++|.++.+... ...+.+++.+++.+|..
T Consensus 148 ~~N~i~~-~-~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 148 SGNLISD-I-SGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSI 198 (414)
T ss_pred ccCcchh-c-cCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCch
Confidence 7654322 1 1223356666667777666655543 35556666666665543
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.05 E-value=1.1e-06 Score=84.05 Aligned_cols=231 Identities=20% Similarity=0.218 Sum_probs=140.3
Q ss_pred CCCCCEEEecCCCCC--cccccccCCCCCCCEEeecCccCC---CcCcccCCCCCCCEEeccCCcCCcccccCccCCCCC
Q 007237 136 FQCLRNLKLSGCSKL--KKFPQIVTTMEDLSELNLDGTSIT---EVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSL 210 (611)
Q Consensus 136 l~~L~~L~L~~~~~l--~~~p~~~~~l~~L~~L~L~~~~i~---~l~~~l~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L 210 (611)
+..++.|.+.+|..- +..-..-...+.+++++|.+|.|+ ++...+.++|.|+.|+++.|.....+...=..+++|
T Consensus 44 ~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl 123 (418)
T KOG2982|consen 44 LRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNL 123 (418)
T ss_pred ccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccce
Confidence 445556666665432 222223345677888888888887 455557888888888888766543332211346688
Q ss_pred CEEEecCCCCC-cccCcccCCCCCccEEeccCCCcccCC---cccc-ccCCCcEEEcCCCCCCCCCCcccccccccccCC
Q 007237 211 KTLNLSGCCKL-ENVPDTLGQVESLEELDISETAVRRPP---SSVF-LMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGK 285 (611)
Q Consensus 211 ~~L~l~~c~~l-~~~p~~l~~l~~L~~L~l~~~~~~~~~---~~~~-~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~ 285 (611)
++|.+.|.... ......+..+|.++.|+++.|...++- ..+. .-+.+++|+..+|....- .
T Consensus 124 ~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w--------------~ 189 (418)
T KOG2982|consen 124 RVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLW--------------L 189 (418)
T ss_pred EEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHH--------------H
Confidence 88888875432 223344567788888888887554321 1111 122445555555431100 0
Q ss_pred ccchhhccCCCCCCCCCCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCCcCC--cccccCCCcCeeecccccccC
Q 007237 286 SSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLP--ASINSLLNLKELEMEDCKRLQ 363 (611)
Q Consensus 286 ~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp--~~i~~l~~L~~L~L~~c~~L~ 363 (611)
.-+.. -.-+|++..+-+..|.+.+..--.....++++-.|+|+.+++-+.. +.+.++++|+-|.+.+.+...
T Consensus 190 ~~~~l------~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 190 NKNKL------SRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred HHHhH------HhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 00000 1235778888888887765555566777888889999999888543 367889999999999998776
Q ss_pred cCCCCCCCcceeeecCCCCcccccC
Q 007237 364 FLPQLPPNIIFVKVNGCSSLVTLLG 388 (611)
Q Consensus 364 ~lp~lp~~L~~L~i~~C~sL~~l~~ 388 (611)
.+.. ..-+.|-|...+.++.+-+
T Consensus 264 ~l~~--~err~llIaRL~~v~vLNG 286 (418)
T KOG2982|consen 264 PLRG--GERRFLLIARLTKVQVLNG 286 (418)
T ss_pred cccC--CcceEEEEeeccceEEecC
Confidence 6654 2224455556666665543
No 48
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.04 E-value=9.4e-07 Score=93.87 Aligned_cols=126 Identities=25% Similarity=0.278 Sum_probs=58.6
Q ss_pred CCcccEEEccCCCCCCcCCCCCCCcccccccccccccccccCccccccCccccCCCccEEEecCCcCcCcCCcccCCCCC
Q 007237 12 LNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMEC 91 (611)
Q Consensus 12 l~~L~~L~Ls~~~~l~~~~~~~~~~~L~~L~L~~c~~l~~i~~s~~~l~~L~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~ 91 (611)
+..++.+++..+........+..+.+|+.|++.++ .+..+... +..+++|++|++++|.+... ..+..++.
T Consensus 71 l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n-~i~~i~~~------l~~~~~L~~L~ls~N~I~~i--~~l~~l~~ 141 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDN-KIEKIENL------LSSLVNLQVLDLSFNKITKL--EGLSTLTL 141 (414)
T ss_pred hHhHHhhccchhhhhhhhcccccccceeeeecccc-chhhcccc------hhhhhcchheeccccccccc--cchhhccc
Confidence 34444444444422211233555556666666554 33333221 23355566666666554432 12334444
Q ss_pred CcEEEcCCCCccccCccccCCCCCcEEeccCCCCCCCCccc-CCCCCCCCEEEecCCC
Q 007237 92 LQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVA-ISSFQCLRNLKLSGCS 148 (611)
Q Consensus 92 L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~-l~~l~~L~~L~L~~~~ 148 (611)
|+.|++.+|.|..+. .+..+..|+.+++++|. +..+... +..+.+|+.+++.++.
T Consensus 142 L~~L~l~~N~i~~~~-~~~~l~~L~~l~l~~n~-i~~ie~~~~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 142 LKELNLSGNLISDIS-GLESLKSLKLLDLSYNR-IVDIENDELSELISLEELDLGGNS 197 (414)
T ss_pred hhhheeccCcchhcc-CCccchhhhcccCCcch-hhhhhhhhhhhccchHHHhccCCc
Confidence 666666666655544 23335556666666543 2222221 2445566666665543
No 49
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.02 E-value=7.7e-06 Score=61.10 Aligned_cols=57 Identities=33% Similarity=0.542 Sum_probs=31.2
Q ss_pred CCCEEeecCccCCCcCc-ccCCCCCCCEEeccCCcCCcccccCccCCCCCCEEEecCC
Q 007237 162 DLSELNLDGTSITEVPS-SIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGC 218 (611)
Q Consensus 162 ~L~~L~L~~~~i~~l~~-~l~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~c 218 (611)
+|++|++++|.++.+|. .+..+++|++|++++|.....-+..+..+++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 45566666666665553 3455556666666555544444444555555555555554
No 50
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.91 E-value=3.7e-06 Score=93.48 Aligned_cols=132 Identities=23% Similarity=0.296 Sum_probs=82.3
Q ss_pred cccccccccccccccc-cCccccccCccccCCCccEEEecCCcCc-CcCCcccCCCCCCcEEEcCCCCccccCccccCCC
Q 007237 36 PNLEELYLEGCTKLRK-VHPSLLLHNKLIFVESLKILILSGCLKL-RKFPHVVGSMECLQELLLDGTDIKELPLSIEHLF 113 (611)
Q Consensus 36 ~~L~~L~L~~c~~l~~-i~~s~~~l~~L~~l~~L~~L~Ls~~~~~-~~lp~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~ 113 (611)
.+|+.|+++|...+.. -+..++.+ +|+|+.|.+++-.+. ..+-....++++|+.||+++++++.+ ..+++++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~-----LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~Lk 195 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTM-----LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLK 195 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhh-----CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccc
Confidence 5778888877543322 22233333 788888888875543 33444556788888888888888877 6788888
Q ss_pred CCcEEeccCCCCCCCCc--ccCCCCCCCCEEEecCCCCCccc------ccccCCCCCCCEEeecCccCC
Q 007237 114 GLVQLTLNDCKNLSSLP--VAISSFQCLRNLKLSGCSKLKKF------PQIVTTMEDLSELNLDGTSIT 174 (611)
Q Consensus 114 ~L~~L~L~~c~~l~~lp--~~l~~l~~L~~L~L~~~~~l~~~------p~~~~~l~~L~~L~L~~~~i~ 174 (611)
+|+.|.+.+-.. ..-. ..+.+|++|++||+|.-...... -+--..+|+|+.||.+++.+.
T Consensus 196 nLq~L~mrnLe~-e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 196 NLQVLSMRNLEF-ESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred cHHHHhccCCCC-CchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 888888876322 2111 12556888888888875443221 112234667777777766655
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.90 E-value=4.7e-08 Score=103.51 Aligned_cols=127 Identities=29% Similarity=0.305 Sum_probs=68.5
Q ss_pred CCEEeecCccCCCcCcccCCCCCCCEEeccCCcCCcccccCccCCCCCCEEEecCCCCCcccCcccCCCCCccEEeccCC
Q 007237 163 LSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISET 242 (611)
Q Consensus 163 L~~L~L~~~~i~~l~~~l~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~c~~l~~~p~~l~~l~~L~~L~l~~~ 242 (611)
|...+.+.|++..+-.++.-++.|+.|+|++|+....- .+..++.|++|+|++|
T Consensus 166 L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN------------------------ 219 (1096)
T KOG1859|consen 166 LATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYN------------------------ 219 (1096)
T ss_pred HhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccc------------------------
Confidence 55566666777777777777777777777776654321 3444555555555553
Q ss_pred CcccCCccccccCCCcEEEcCCCCCCCCCCcccccccccccCCccchhhccCCCCCCCCCCCEEeccCCCCCCCCCCCCC
Q 007237 243 AVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDI 322 (611)
Q Consensus 243 ~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~~~~l 322 (611)
.+..+|..-..-..|+.|.+++|... .+..+.++.+|+.||+++|-+.+..-...+
T Consensus 220 ~L~~vp~l~~~gc~L~~L~lrnN~l~------------------------tL~gie~LksL~~LDlsyNll~~hseL~pL 275 (1096)
T KOG1859|consen 220 CLRHVPQLSMVGCKLQLLNLRNNALT------------------------TLRGIENLKSLYGLDLSYNLLSEHSELEPL 275 (1096)
T ss_pred hhccccccchhhhhheeeeecccHHH------------------------hhhhHHhhhhhhccchhHhhhhcchhhhHH
Confidence 33333322221122444444444310 122245566677777777666543333345
Q ss_pred CCCCCCCEEEcCCCCCC
Q 007237 323 GNLHSLNELYLSKNNFV 339 (611)
Q Consensus 323 ~~l~~L~~L~L~~n~l~ 339 (611)
..+..|+.|.|.||.+-
T Consensus 276 wsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 276 WSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred HHHHHHHHHhhcCCccc
Confidence 55666777777776554
No 52
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.68 E-value=1.9e-05 Score=87.83 Aligned_cols=132 Identities=23% Similarity=0.293 Sum_probs=94.7
Q ss_pred CCCcEEeccCCCCCCCCc-ccC-CCCCCCCEEEecCCCCC-cccccccCCCCCCCEEeecCccCCCcCcccCCCCCCCEE
Q 007237 113 FGLVQLTLNDCKNLSSLP-VAI-SSFQCLRNLKLSGCSKL-KKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELL 189 (611)
Q Consensus 113 ~~L~~L~L~~c~~l~~lp-~~l-~~l~~L~~L~L~~~~~l-~~~p~~~~~l~~L~~L~L~~~~i~~l~~~l~~l~~L~~L 189 (611)
.+|++|++++...+..-+ ..+ ..||+|+.|.+.+-... .++.....++++|..||+++++++.+ ..++++++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 478888888754443322 222 34899999999885443 45677888999999999999999988 778999999999
Q ss_pred eccCCcCCc-ccccCccCCCCCCEEEecCCCCCccc------CcccCCCCCccEEeccCCCcc
Q 007237 190 NLNDCKNFA-RVPSSINGLKSLKTLNLSGCCKLENV------PDTLGQVESLEELDISETAVR 245 (611)
Q Consensus 190 ~L~~~~~~~-~lp~~i~~l~~L~~L~l~~c~~l~~~------p~~l~~l~~L~~L~l~~~~~~ 245 (611)
.+.+-.... ..-..+.+|++|++||+|.-.....- -+.-..+|.|+.||.+++.+.
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 998744432 11224677999999999986544321 122234788999999988766
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.64 E-value=3.9e-05 Score=52.74 Aligned_cols=34 Identities=35% Similarity=0.570 Sum_probs=17.8
Q ss_pred CCCEEEcCCCCCCcCCcccccCCCcCeeeccccc
Q 007237 327 SLNELYLSKNNFVTLPASINSLLNLKELEMEDCK 360 (611)
Q Consensus 327 ~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~ 360 (611)
+|++|++++|+++.+|..+++|++|+.|++++|+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCC
Confidence 4555555555555555545555555555555553
No 54
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.58 E-value=1.8e-05 Score=75.93 Aligned_cols=41 Identities=22% Similarity=0.261 Sum_probs=27.0
Q ss_pred CCCCCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCC
Q 007237 299 GLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFV 339 (611)
Q Consensus 299 ~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~ 339 (611)
.++.+--|+|+.+++..-+-.+.+..++.|..|.++.+.+.
T Consensus 222 ~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 222 PFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred CCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 34455567777777754334456777888888888877655
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.51 E-value=7.3e-05 Score=51.38 Aligned_cols=41 Identities=32% Similarity=0.590 Sum_probs=34.5
Q ss_pred CCCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCCcCCc
Q 007237 301 RSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPA 343 (611)
Q Consensus 301 ~~L~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~ 343 (611)
++|++|++++|++.+ +|..+++|++|+.|++++|+++.++.
T Consensus 1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCCCCcc--cCchHhCCCCCCEEEecCCCCCCCcC
Confidence 479999999999964 88779999999999999999997763
No 56
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.35 E-value=0.00041 Score=63.31 Aligned_cols=80 Identities=25% Similarity=0.293 Sum_probs=50.5
Q ss_pred CCcEEeccCCCCCCCCcccCCCCCCCCEEEecCCCCCcccccccCCCCCCCEEeecCccCCCcCc--ccCCCCCCCEEec
Q 007237 114 GLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPS--SIELLPGLELLNL 191 (611)
Q Consensus 114 ~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~l~~--~l~~l~~L~~L~L 191 (611)
+...++++++. +..++. +..++.|..|.+++|.....-|..-..+++|+.|.|.+|+|.++.+ .+..+++|++|.+
T Consensus 43 ~~d~iDLtdNd-l~~l~~-lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDND-LRKLDN-LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccc-hhhccc-CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 44456666633 334333 4457778888887777666666666667778888888887775543 2455666666666
Q ss_pred cCCc
Q 007237 192 NDCK 195 (611)
Q Consensus 192 ~~~~ 195 (611)
-+|.
T Consensus 121 l~Np 124 (233)
T KOG1644|consen 121 LGNP 124 (233)
T ss_pred cCCc
Confidence 5554
No 57
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.29 E-value=5e-06 Score=88.59 Aligned_cols=122 Identities=26% Similarity=0.267 Sum_probs=85.5
Q ss_pred CCCEEEecCCCCCcccCcccCCCCCccEEeccCCCcccCCccccccCCCcEEEcCCCCCCCCCCcccccccccccCCccc
Q 007237 209 SLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSC 288 (611)
Q Consensus 209 ~L~~L~l~~c~~l~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~ 288 (611)
.|.+.+.++| .+..+.+++.-++.|+.|+++.|.+.+.. .+..++.|++|+|+.|...
T Consensus 165 ~L~~a~fsyN-~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~-------------------- 222 (1096)
T KOG1859|consen 165 KLATASFSYN-RLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLR-------------------- 222 (1096)
T ss_pred hHhhhhcchh-hHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhc--------------------
Confidence 4555555543 33444556777888999999999888765 6778889999999887621
Q ss_pred hhhccCCC--CCCCCCCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCCcCC--cccccCCCcCeeeccccc
Q 007237 289 LVALMLPS--LSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLP--ASINSLLNLKELEMEDCK 360 (611)
Q Consensus 289 ~~~~~l~~--l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp--~~i~~l~~L~~L~L~~c~ 360 (611)
.+|. ..++. |+.|.+++|.++ -..++.++.+|+.||++.|-+..-. ..+..|..|+.|+|.+++
T Consensus 223 ----~vp~l~~~gc~-L~~L~lrnN~l~---tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 223 ----HVPQLSMVGCK-LQLLNLRNNALT---TLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred ----cccccchhhhh-heeeeecccHHH---hhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 1222 12333 888999988875 2346778889999999988665322 246677888899999887
No 58
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.27 E-value=1.5e-05 Score=86.62 Aligned_cols=134 Identities=28% Similarity=0.425 Sum_probs=83.6
Q ss_pred CCCcccccccccccccccccCccccccCccccCCCccEEEecCC-cCcCcC----CcccCCCCCCcEEEcCCCC-cccc-
Q 007237 33 TEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGC-LKLRKF----PHVVGSMECLQELLLDGTD-IKEL- 105 (611)
Q Consensus 33 ~~~~~L~~L~L~~c~~l~~i~~s~~~l~~L~~l~~L~~L~Ls~~-~~~~~l----p~~l~~l~~L~~L~L~~~~-i~~l- 105 (611)
..+++|+.|.+.+|..+.... .......+++|++|++++| ...... ......+++|+.|+++.+. +++.
T Consensus 185 ~~~~~L~~l~l~~~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~ 260 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITDDS----LDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIG 260 (482)
T ss_pred hhCchhhHhhhcccccCChhh----HHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchh
Confidence 447888999988887776532 0112234788888998873 222211 2244557888889888877 4432
Q ss_pred -CccccCCCCCcEEeccCCCCCCCCc--ccCCCCCCCCEEEecCCCCCcc--cccccCCCCCCCEEeecC
Q 007237 106 -PLSIEHLFGLVQLTLNDCKNLSSLP--VAISSFQCLRNLKLSGCSKLKK--FPQIVTTMEDLSELNLDG 170 (611)
Q Consensus 106 -p~~~~~l~~L~~L~L~~c~~l~~lp--~~l~~l~~L~~L~L~~~~~l~~--~p~~~~~l~~L~~L~L~~ 170 (611)
..-...+++|++|.+.+|..++... .....+++|++|++++|..+.. +.....++++|+.|.+..
T Consensus 261 l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~ 330 (482)
T KOG1947|consen 261 LSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLS 330 (482)
T ss_pred HHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhh
Confidence 2222337889999988887643322 2235578899999999887632 333444566666655443
No 59
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.19 E-value=0.0001 Score=69.97 Aligned_cols=84 Identities=24% Similarity=0.177 Sum_probs=45.4
Q ss_pred CCCccEEEecCCcCcC----cCCcccCCCCCCcEEEcCCCCcc----ccC-------ccccCCCCCcEEeccCCCCCCCC
Q 007237 65 VESLKILILSGCLKLR----KFPHVVGSMECLQELLLDGTDIK----ELP-------LSIEHLFGLVQLTLNDCKNLSSL 129 (611)
Q Consensus 65 l~~L~~L~Ls~~~~~~----~lp~~l~~l~~L~~L~L~~~~i~----~lp-------~~~~~l~~L~~L~L~~c~~l~~l 129 (611)
+..+..++||||.+.. .+...+.+-.+|+..+++..-.. +++ ..+.+|++|+..++++|..-...
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 4556666666666543 23334455566666666643211 222 23445666666666665544444
Q ss_pred ccc----CCCCCCCCEEEecCCC
Q 007237 130 PVA----ISSFQCLRNLKLSGCS 148 (611)
Q Consensus 130 p~~----l~~l~~L~~L~L~~~~ 148 (611)
|.. +++-+.|++|.+++|.
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCC
Confidence 432 3445666666666653
No 60
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.19 E-value=1.3e-05 Score=68.32 Aligned_cols=90 Identities=19% Similarity=0.285 Sum_probs=52.5
Q ss_pred CCCCCcEEEcCCCCccccCccccCC-CCCcEEeccCCCCCCCCcccCCCCCCCCEEEecCCCCCcccccccCCCCCCCEE
Q 007237 88 SMECLQELLLDGTDIKELPLSIEHL-FGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSEL 166 (611)
Q Consensus 88 ~l~~L~~L~L~~~~i~~lp~~~~~l-~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~~~~l~~L~~L 166 (611)
...+|...++++|.++.+|..+... +-+++|++.+ +.+.++|..+..++.|+.|+++.|+ +...|..+..+.+|-.|
T Consensus 51 ~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~-neisdvPeE~Aam~aLr~lNl~~N~-l~~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLAN-NEISDVPEELAAMPALRSLNLRFNP-LNAEPRVIAPLIKLDML 128 (177)
T ss_pred CCceEEEEecccchhhhCCHHHhhccchhhhhhcch-hhhhhchHHHhhhHHhhhcccccCc-cccchHHHHHHHhHHHh
Confidence 3445555666666666666655433 3566666665 3456666666666666666666643 33444444456666666
Q ss_pred eecCccCCCcCcc
Q 007237 167 NLDGTSITEVPSS 179 (611)
Q Consensus 167 ~L~~~~i~~l~~~ 179 (611)
+..++.+.+++..
T Consensus 129 ds~~na~~eid~d 141 (177)
T KOG4579|consen 129 DSPENARAEIDVD 141 (177)
T ss_pred cCCCCccccCcHH
Confidence 6666666666544
No 61
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.12 E-value=4.8e-05 Score=82.56 Aligned_cols=232 Identities=25% Similarity=0.317 Sum_probs=100.0
Q ss_pred CCCCCEEEecCCCCCcc--cccccCCCCCCCEEeecCc--cCCCc----CcccCCCCCCCEEeccCCcCCccc-ccCc-c
Q 007237 136 FQCLRNLKLSGCSKLKK--FPQIVTTMEDLSELNLDGT--SITEV----PSSIELLPGLELLNLNDCKNFARV-PSSI-N 205 (611)
Q Consensus 136 l~~L~~L~L~~~~~l~~--~p~~~~~l~~L~~L~L~~~--~i~~l----~~~l~~l~~L~~L~L~~~~~~~~l-p~~i-~ 205 (611)
.+.|+.|.+.+|..+.. +-......++|++|+++++ .+... ......+++|+.|+++.|...... -..+ .
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 44555555555544443 2234444455555555542 11111 112233455666666655532211 1111 1
Q ss_pred CCCCCCEEEecCCCCCc--ccCcccCCCCCccEEeccCCCcc---cCCccccccCCCcEEEcCCCCC---CCCCCccccc
Q 007237 206 GLKSLKTLNLSGCCKLE--NVPDTLGQVESLEELDISETAVR---RPPSSVFLMKNLRTLSFSGCNG---PPSSASWHLH 277 (611)
Q Consensus 206 ~l~~L~~L~l~~c~~l~--~~p~~l~~l~~L~~L~l~~~~~~---~~~~~~~~l~~L~~L~l~~c~~---~~~~~~~~~~ 277 (611)
.+++|++|.+.+|..+. .+......+++|+.|+++++... .+......+++|+.|.+..+.. +.......
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~-- 344 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSG-- 344 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHH--
Confidence 25566666665555321 12223344556666666655443 1222233355555544443332 11100000
Q ss_pred ccccccCCccch-hhccCCCCCCCCCCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCCcCCcccccCCCcCeeec
Q 007237 278 LPFNLMGKSSCL-VALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEM 356 (611)
Q Consensus 278 ~~~~~~~~~~~~-~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L 356 (611)
..... .....-....++.++.+.+.+|...+......+.+|+.|+ ..+.. .......++.|++
T Consensus 345 -------~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~~--------~~~~~~~l~~L~l 408 (482)
T KOG1947|consen 345 -------LLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLEL--------RLCRSDSLRVLNL 408 (482)
T ss_pred -------hhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHHH--------HhccCCccceEec
Confidence 00000 0001111567788888888887754333233445555552 21111 1122223778888
Q ss_pred ccccccCcCCC--C---CCCcceeeecCCCCccc
Q 007237 357 EDCKRLQFLPQ--L---PPNIIFVKVNGCSSLVT 385 (611)
Q Consensus 357 ~~c~~L~~lp~--l---p~~L~~L~i~~C~sL~~ 385 (611)
..|...+.-.- . -..++.+++.+|+....
T Consensus 409 ~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~ 442 (482)
T KOG1947|consen 409 SDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITL 442 (482)
T ss_pred ccCccccccchHHHhhhhhccccCCccCcccccc
Confidence 88775432211 1 23345555555555444
No 62
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.10 E-value=4.2e-05 Score=72.57 Aligned_cols=88 Identities=25% Similarity=0.329 Sum_probs=54.5
Q ss_pred cCCCCCCcEEEcCCCCcc-----ccCccccCCCCCcEEeccCCCCCC----CCc-------ccCCCCCCCCEEEecCCCC
Q 007237 86 VGSMECLQELLLDGTDIK-----ELPLSIEHLFGLVQLTLNDCKNLS----SLP-------VAISSFQCLRNLKLSGCSK 149 (611)
Q Consensus 86 l~~l~~L~~L~L~~~~i~-----~lp~~~~~l~~L~~L~L~~c~~l~----~lp-------~~l~~l~~L~~L~L~~~~~ 149 (611)
+..+..+..++|++|.|. .+...+.+-.+|+..++++- ..+ .++ ..+.+++.|+..+|++|-.
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf 104 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF 104 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence 344778888999998876 35555666677777777652 111 122 2344577777777777665
Q ss_pred Cccccc----ccCCCCCCCEEeecCccCC
Q 007237 150 LKKFPQ----IVTTMEDLSELNLDGTSIT 174 (611)
Q Consensus 150 l~~~p~----~~~~l~~L~~L~L~~~~i~ 174 (611)
...+|+ .+..-+.|.+|.+.+|++.
T Consensus 105 g~~~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 105 GSEFPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred CcccchHHHHHHhcCCCceeEEeecCCCC
Confidence 554443 3445566666776666554
No 63
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.07 E-value=0.0009 Score=61.16 Aligned_cols=103 Identities=20% Similarity=0.193 Sum_probs=62.0
Q ss_pred ccccccccccccccccCccccccCccccCCCccEEEecCCcCcCcCCcccCCCCCCcEEEcCCCCccccCc--cccCCCC
Q 007237 37 NLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPL--SIEHLFG 114 (611)
Q Consensus 37 ~L~~L~L~~c~~l~~i~~s~~~l~~L~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~L~~~~i~~lp~--~~~~l~~ 114 (611)
+...+||+++ .+ ..+..+..++.|.+|.|..|.++..-|..-.-+++|..|.+.+|.|.++.+ .+..+++
T Consensus 43 ~~d~iDLtdN-dl-------~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~ 114 (233)
T KOG1644|consen 43 QFDAIDLTDN-DL-------RKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPK 114 (233)
T ss_pred ccceeccccc-ch-------hhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCc
Confidence 4555666554 22 223344456667777777776666555555556677777777777765542 4556777
Q ss_pred CcEEeccCCCCCCCCc----ccCCCCCCCCEEEecCCC
Q 007237 115 LVQLTLNDCKNLSSLP----VAISSFQCLRNLKLSGCS 148 (611)
Q Consensus 115 L~~L~L~~c~~l~~lp----~~l~~l~~L~~L~L~~~~ 148 (611)
|++|.+-++..- ... -.+..+++|+.||..+-.
T Consensus 115 L~~Ltll~Npv~-~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 115 LEYLTLLGNPVE-HKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred cceeeecCCchh-cccCceeEEEEecCcceEeehhhhh
Confidence 777777665422 211 125568888888887643
No 64
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.72 E-value=9.9e-05 Score=63.00 Aligned_cols=108 Identities=19% Similarity=0.168 Sum_probs=74.0
Q ss_pred ccccccccccccccccCccccccCccccCCCccEEEecCCcCcCcCCcccCCCCCCcEEEcCCCCccccCccccCCCCCc
Q 007237 37 NLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLV 116 (611)
Q Consensus 37 ~L~~L~L~~c~~l~~i~~s~~~l~~L~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~ 116 (611)
.+-.++|++| .+..++..+.. +....+|...+|++|.+...-+......+.++.|++++|.+.++|..+..++.|+
T Consensus 28 E~h~ldLssc-~lm~i~davy~---l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr 103 (177)
T KOG4579|consen 28 ELHFLDLSSC-QLMYIADAVYM---LSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALR 103 (177)
T ss_pred Hhhhcccccc-hhhHHHHHHHH---HhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhh
Confidence 4456677777 33334433222 2234677888888876544333344455688889999999999998888899999
Q ss_pred EEeccCCCCCCCCcccCCCCCCCCEEEecCCCC
Q 007237 117 QLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSK 149 (611)
Q Consensus 117 ~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~~ 149 (611)
.|+++.|+ +...|..+..+.+|-.|+..++..
T Consensus 104 ~lNl~~N~-l~~~p~vi~~L~~l~~Lds~~na~ 135 (177)
T KOG4579|consen 104 SLNLRFNP-LNAEPRVIAPLIKLDMLDSPENAR 135 (177)
T ss_pred hcccccCc-cccchHHHHHHHhHHHhcCCCCcc
Confidence 99998854 666777776688888888777543
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.71 E-value=0.00079 Score=64.09 Aligned_cols=85 Identities=26% Similarity=0.232 Sum_probs=54.9
Q ss_pred CCCCcccccccccccccccccCccccccCccccCCCccEEEecCC--cCcCcCCcccCCCCCCcEEEcCCCCccccC--c
Q 007237 32 FTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGC--LKLRKFPHVVGSMECLQELLLDGTDIKELP--L 107 (611)
Q Consensus 32 ~~~~~~L~~L~L~~c~~l~~i~~s~~~l~~L~~l~~L~~L~Ls~~--~~~~~lp~~l~~l~~L~~L~L~~~~i~~lp--~ 107 (611)
.-.+.+|+.|.+.++ .++ .+..+..+++|++|.+|.| .....++.....+++|++|++++|+++.+. .
T Consensus 39 ~d~~~~le~ls~~n~-glt-------t~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~ 110 (260)
T KOG2739|consen 39 TDEFVELELLSVINV-GLT-------TLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR 110 (260)
T ss_pred cccccchhhhhhhcc-cee-------ecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc
Confidence 345677777777765 222 2344555888999999998 556677777777788888888888876522 1
Q ss_pred cccCCCCCcEEeccCCC
Q 007237 108 SIEHLFGLVQLTLNDCK 124 (611)
Q Consensus 108 ~~~~l~~L~~L~L~~c~ 124 (611)
.+..+.+|..|++.+|.
T Consensus 111 pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 111 PLKELENLKSLDLFNCS 127 (260)
T ss_pred hhhhhcchhhhhcccCC
Confidence 23334445555555544
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.29 E-value=0.0026 Score=60.64 Aligned_cols=87 Identities=25% Similarity=0.338 Sum_probs=58.1
Q ss_pred CCCCCCCCEEeccCC--CCCCCCCCCCCCCCCCCCEEEcCCCCCCcC--CcccccCCCcCeeecccccccCc------CC
Q 007237 297 LSGLRSLTKLDLSDC--GLGEGAIPSDIGNLHSLNELYLSKNNFVTL--PASINSLLNLKELEMEDCKRLQF------LP 366 (611)
Q Consensus 297 l~~l~~L~~L~Ls~~--~l~~~~~~~~l~~l~~L~~L~L~~n~l~~l--p~~i~~l~~L~~L~L~~c~~L~~------lp 366 (611)
+..+++|+.|.++.| .+. ..++.....+++|++|++++|++..+ -..+..+.+|..|++.+|...+. +.
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~-~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf 139 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVS-GGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVF 139 (260)
T ss_pred CCCcchhhhhcccCCccccc-ccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHH
Confidence 556778899999888 443 34444456669999999999987732 22467788888888888875441 11
Q ss_pred CCCCCcceeeecCCCCcc
Q 007237 367 QLPPNIIFVKVNGCSSLV 384 (611)
Q Consensus 367 ~lp~~L~~L~i~~C~sL~ 384 (611)
.+.++|++|+-.++..=+
T Consensus 140 ~ll~~L~~LD~~dv~~~E 157 (260)
T KOG2739|consen 140 LLLPSLKYLDGCDVDGEE 157 (260)
T ss_pred HHhhhhccccccccCCcc
Confidence 245666666665555433
No 67
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.78 E-value=0.077 Score=45.88 Aligned_cols=86 Identities=9% Similarity=0.089 Sum_probs=34.1
Q ss_pred cccccCCCcccEEEccCCCCCCcCCCCCCCcccccccccccccccccCccccccCccccCCCccEEEecCCcCcCcCCcc
Q 007237 6 FCFQQHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHV 85 (611)
Q Consensus 6 ~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~L~~L~L~~c~~l~~i~~s~~~l~~L~~l~~L~~L~Ls~~~~~~~lp~~ 85 (611)
-..+..+++|+.+.+...-.......|..+++|+.+.+.+ .+..++... +..+++|+.+.+.+ .....-...
T Consensus 5 ~~~F~~~~~l~~i~~~~~~~~I~~~~F~~~~~l~~i~~~~--~~~~i~~~~-----F~~~~~l~~i~~~~-~~~~i~~~~ 76 (129)
T PF13306_consen 5 NNAFYNCSNLESITFPNTIKKIGENAFSNCTSLKSINFPN--NLTSIGDNA-----FSNCKSLESITFPN-NLKSIGDNA 76 (129)
T ss_dssp TTTTTT-TT--EEEETST--EE-TTTTTT-TT-SEEEESS--TTSCE-TTT-----TTT-TT-EEEEETS-TT-EE-TTT
T ss_pred HHHHhCCCCCCEEEECCCeeEeChhhcccccccccccccc--cccccceee-----eecccccccccccc-ccccccccc
Confidence 3445566677777765421111222466666677666654 244444322 12244555666543 111111223
Q ss_pred cCCCCCCcEEEcCC
Q 007237 86 VGSMECLQELLLDG 99 (611)
Q Consensus 86 l~~l~~L~~L~L~~ 99 (611)
+..+.+|+.+++..
T Consensus 77 F~~~~~l~~i~~~~ 90 (129)
T PF13306_consen 77 FSNCTNLKNIDIPS 90 (129)
T ss_dssp TTT-TTECEEEETT
T ss_pred ccccccccccccCc
Confidence 44455555555543
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.73 E-value=0.0016 Score=62.36 Aligned_cols=98 Identities=23% Similarity=0.253 Sum_probs=56.0
Q ss_pred CCccEEEecCCcCcCcCCcccCCCCCCcEEEcCCCCccccCccccCCCCCcEEeccCCCCCCCCcc--cCCCCCCCCEEE
Q 007237 66 ESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPV--AISSFQCLRNLK 143 (611)
Q Consensus 66 ~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~c~~l~~lp~--~l~~l~~L~~L~ 143 (611)
.+.+.|++.||.+.. ......|+.|++|.|+-|.|+.+. .+..|++|++|.|..|. +.++.. -+.++++|+.|.
T Consensus 19 ~~vkKLNcwg~~L~D--Isic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDD--ISICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHhhhhcccCCCccH--HHHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhHh
Confidence 344555555555432 123345677777777777777664 46677777777777632 444432 145677777777
Q ss_pred ecCCCCCccccc-----ccCCCCCCCEEe
Q 007237 144 LSGCSKLKKFPQ-----IVTTMEDLSELN 167 (611)
Q Consensus 144 L~~~~~l~~~p~-----~~~~l~~L~~L~ 167 (611)
|..|.-.+..+. .+.-+++|+.|+
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhcc
Confidence 776654443332 234455555554
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.54 E-value=0.012 Score=33.53 Aligned_cols=20 Identities=40% Similarity=0.602 Sum_probs=12.0
Q ss_pred CCCEEEcCCCCCCcCCcccc
Q 007237 327 SLNELYLSKNNFVTLPASIN 346 (611)
Q Consensus 327 ~L~~L~L~~n~l~~lp~~i~ 346 (611)
+|++|+|++|+++.+|..++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp TESEEEETSSEESEEGTTTT
T ss_pred CccEEECCCCcCEeCChhhc
Confidence 35666666666666665543
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.25 E-value=0.021 Score=32.57 Aligned_cols=18 Identities=33% Similarity=0.582 Sum_probs=8.6
Q ss_pred CcEEEcCCCCccccCccc
Q 007237 92 LQELLLDGTDIKELPLSI 109 (611)
Q Consensus 92 L~~L~L~~~~i~~lp~~~ 109 (611)
|++|++++|.++.+|.++
T Consensus 2 L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp ESEEEETSSEESEEGTTT
T ss_pred ccEEECCCCcCEeCChhh
Confidence 444444444444444443
No 71
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.21 E-value=0.0023 Score=61.32 Aligned_cols=63 Identities=24% Similarity=0.270 Sum_probs=49.8
Q ss_pred CCCCCCCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCCcCCc--ccccCCCcCeeeccccccc
Q 007237 297 LSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPA--SINSLLNLKELEMEDCKRL 362 (611)
Q Consensus 297 l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~--~i~~l~~L~~L~L~~c~~L 362 (611)
...++.|+.|.|+-|+|+ -...+..|+.|++|+|..|.+.++.+ .+.++|+|+.|+|..++--
T Consensus 37 c~kMp~lEVLsLSvNkIs---sL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc 101 (388)
T KOG2123|consen 37 CEKMPLLEVLSLSVNKIS---SLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCC 101 (388)
T ss_pred HHhcccceeEEeeccccc---cchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcc
Confidence 456788999999988885 34557788899999999998887654 5788999999998887743
No 72
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.11 E-value=0.22 Score=43.02 Aligned_cols=33 Identities=12% Similarity=0.218 Sum_probs=9.8
Q ss_pred CCCCCcEEEcCCCCccccCc-cccCCCCCcEEecc
Q 007237 88 SMECLQELLLDGTDIKELPL-SIEHLFGLVQLTLN 121 (611)
Q Consensus 88 ~l~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~L~ 121 (611)
.+.+|+.+.+.. .++.++. .+..+++|+.+.+.
T Consensus 10 ~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~ 43 (129)
T PF13306_consen 10 NCSNLESITFPN-TIKKIGENAFSNCTSLKSINFP 43 (129)
T ss_dssp T-TT--EEEETS-T--EE-TTTTTT-TT-SEEEES
T ss_pred CCCCCCEEEECC-CeeEeChhhccccccccccccc
Confidence 334444444432 2333322 23334444444444
No 73
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.13 E-value=0.061 Score=28.50 Aligned_cols=15 Identities=40% Similarity=0.554 Sum_probs=5.7
Q ss_pred CCCEEEcCCCCCCcC
Q 007237 327 SLNELYLSKNNFVTL 341 (611)
Q Consensus 327 ~L~~L~L~~n~l~~l 341 (611)
+|+.|+|++|+++.+
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 444555555544443
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=90.83 E-value=0.16 Score=26.85 Aligned_cols=12 Identities=25% Similarity=0.373 Sum_probs=3.5
Q ss_pred CcEEEcCCCCcc
Q 007237 92 LQELLLDGTDIK 103 (611)
Q Consensus 92 L~~L~L~~~~i~ 103 (611)
|+.|++++|+++
T Consensus 3 L~~L~l~~n~L~ 14 (17)
T PF13504_consen 3 LRTLDLSNNRLT 14 (17)
T ss_dssp -SEEEETSS--S
T ss_pred cCEEECCCCCCC
Confidence 333333333333
No 75
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=87.63 E-value=0.49 Score=28.02 Aligned_cols=21 Identities=43% Similarity=0.610 Sum_probs=15.8
Q ss_pred CCCCCEEEcCCCCCCcCCccc
Q 007237 325 LHSLNELYLSKNNFVTLPASI 345 (611)
Q Consensus 325 l~~L~~L~L~~n~l~~lp~~i 345 (611)
+++|+.|+|++|++..+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 457788888888888887653
No 76
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=87.63 E-value=0.49 Score=28.02 Aligned_cols=21 Identities=43% Similarity=0.610 Sum_probs=15.8
Q ss_pred CCCCCEEEcCCCCCCcCCccc
Q 007237 325 LHSLNELYLSKNNFVTLPASI 345 (611)
Q Consensus 325 l~~L~~L~L~~n~l~~lp~~i 345 (611)
+++|+.|+|++|++..+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 457788888888888887653
No 77
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.27 E-value=0.11 Score=47.95 Aligned_cols=84 Identities=19% Similarity=0.223 Sum_probs=54.9
Q ss_pred cccEEEccCCCCCC-cCCCCCCCcccccccccccccccccCccccccCccccCCCccEEEecCCcCcCc-CCcccCCCCC
Q 007237 14 MLKVMKLSHSENLI-KTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRK-FPHVVGSMEC 91 (611)
Q Consensus 14 ~L~~L~Ls~~~~l~-~~~~~~~~~~L~~L~L~~c~~l~~i~~s~~~l~~L~~l~~L~~L~Ls~~~~~~~-lp~~l~~l~~ 91 (611)
.++.+|=+++.... ....+..++.++.|.+.+|..+...- +..+.. ..++|+.|+|++|+.++. --..+..+++
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~--L~~l~~--~~~~L~~L~lsgC~rIT~~GL~~L~~lkn 177 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWC--LERLGG--LAPSLQDLDLSGCPRITDGGLACLLKLKN 177 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHH--HHHhcc--cccchheeeccCCCeechhHHHHHHHhhh
Confidence 45677766665332 24457778888888888887666421 111222 268899999998886543 3356778888
Q ss_pred CcEEEcCCCC
Q 007237 92 LQELLLDGTD 101 (611)
Q Consensus 92 L~~L~L~~~~ 101 (611)
|+.|.+.+-.
T Consensus 178 Lr~L~l~~l~ 187 (221)
T KOG3864|consen 178 LRRLHLYDLP 187 (221)
T ss_pred hHHHHhcCch
Confidence 8888887643
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=82.85 E-value=0.94 Score=26.76 Aligned_cols=19 Identities=32% Similarity=0.455 Sum_probs=12.7
Q ss_pred CCCcEEEcCCCCccccCcc
Q 007237 90 ECLQELLLDGTDIKELPLS 108 (611)
Q Consensus 90 ~~L~~L~L~~~~i~~lp~~ 108 (611)
++|++|++++|.++.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4567777777777776654
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=82.85 E-value=0.94 Score=26.76 Aligned_cols=19 Identities=32% Similarity=0.455 Sum_probs=12.7
Q ss_pred CCCcEEEcCCCCccccCcc
Q 007237 90 ECLQELLLDGTDIKELPLS 108 (611)
Q Consensus 90 ~~L~~L~L~~~~i~~lp~~ 108 (611)
++|++|++++|.++.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4567777777777776654
No 80
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=81.69 E-value=0.01 Score=63.52 Aligned_cols=178 Identities=22% Similarity=0.253 Sum_probs=87.9
Q ss_pred ccEEEecCCcCcCc----CCcccCCCCCCcEEEcCCCCccc-----cCccccCC-CCCcEEeccCCCCCCC----CcccC
Q 007237 68 LKILILSGCLKLRK----FPHVVGSMECLQELLLDGTDIKE-----LPLSIEHL-FGLVQLTLNDCKNLSS----LPVAI 133 (611)
Q Consensus 68 L~~L~Ls~~~~~~~----lp~~l~~l~~L~~L~L~~~~i~~-----lp~~~~~l-~~L~~L~L~~c~~l~~----lp~~l 133 (611)
+..|.|.+|.+... +...+...+.|..|+++++++.. +-..+... ..|++|++..|..... +...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 66777777766533 23345566777777777777661 22223333 4556666666543322 33334
Q ss_pred CCCCCCCEEEecCCCCCc----ccccccC----CCCCCCEEeecCccCCCc-----CcccCCCCC-CCEEeccCCcCCcc
Q 007237 134 SSFQCLRNLKLSGCSKLK----KFPQIVT----TMEDLSELNLDGTSITEV-----PSSIELLPG-LELLNLNDCKNFAR 199 (611)
Q Consensus 134 ~~l~~L~~L~L~~~~~l~----~~p~~~~----~l~~L~~L~L~~~~i~~l-----~~~l~~l~~-L~~L~L~~~~~~~~ 199 (611)
.....++.++++.|.... .++..+. ...++++|++.++.++.. -..+...+. +..|++..|.....
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 445666677776665431 1122222 345566666666655521 112333333 44455555543322
Q ss_pred ----cccCccCC-CCCCEEEecCCCCCcc----cCcccCCCCCccEEeccCCCcc
Q 007237 200 ----VPSSINGL-KSLKTLNLSGCCKLEN----VPDTLGQVESLEELDISETAVR 245 (611)
Q Consensus 200 ----lp~~i~~l-~~L~~L~l~~c~~l~~----~p~~l~~l~~L~~L~l~~~~~~ 245 (611)
+...+..+ ..++++++++|+.... +...+..+++++.+.++.|.+.
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 12222233 4455666666555432 2233344455555555555444
No 81
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.34 E-value=0.22 Score=45.98 Aligned_cols=37 Identities=30% Similarity=0.234 Sum_probs=23.0
Q ss_pred CCCCCEEEcCCC-CCC-cCCcccccCCCcCeeecccccc
Q 007237 325 LHSLNELYLSKN-NFV-TLPASINSLLNLKELEMEDCKR 361 (611)
Q Consensus 325 l~~L~~L~L~~n-~l~-~lp~~i~~l~~L~~L~L~~c~~ 361 (611)
.++|+.|+|++| +|+ .=-.++.++++|+.|.+.+.+.
T Consensus 150 ~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~ 188 (221)
T KOG3864|consen 150 APSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPY 188 (221)
T ss_pred ccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchh
Confidence 356666666666 233 2224677788888888777653
No 82
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=76.93 E-value=1.2 Score=26.44 Aligned_cols=17 Identities=53% Similarity=0.976 Sum_probs=11.2
Q ss_pred Ccccccccccccccccc
Q 007237 35 APNLEELYLEGCTKLRK 51 (611)
Q Consensus 35 ~~~L~~L~L~~c~~l~~ 51 (611)
+++|+.|+|++|..+++
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 46677777777766654
No 83
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=76.36 E-value=0.03 Score=59.97 Aligned_cols=87 Identities=22% Similarity=0.372 Sum_probs=45.9
Q ss_pred CCCCCEEEecCCCCCcc----cccccCCCCC-CCEEeecCccCCC-----cCcccCCC-CCCCEEeccCCcCCcc----c
Q 007237 136 FQCLRNLKLSGCSKLKK----FPQIVTTMED-LSELNLDGTSITE-----VPSSIELL-PGLELLNLNDCKNFAR----V 200 (611)
Q Consensus 136 l~~L~~L~L~~~~~l~~----~p~~~~~l~~-L~~L~L~~~~i~~-----l~~~l~~l-~~L~~L~L~~~~~~~~----l 200 (611)
..++++|.+++|..... +...+...+. +.+|++..|++.+ +.+.+..+ ..+++++++.|..... +
T Consensus 203 ~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L 282 (478)
T KOG4308|consen 203 LSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDL 282 (478)
T ss_pred cccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHH
Confidence 45666666666544321 1122333333 5556666666552 22233444 5667777777665543 2
Q ss_pred ccCccCCCCCCEEEecCCCCCc
Q 007237 201 PSSINGLKSLKTLNLSGCCKLE 222 (611)
Q Consensus 201 p~~i~~l~~L~~L~l~~c~~l~ 222 (611)
...+..++.++.+.++.+....
T Consensus 283 ~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 283 AEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHhhhHHHHHhhcccCcccc
Confidence 3344556677777777765543
No 84
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=73.49 E-value=2.4 Score=25.22 Aligned_cols=18 Identities=44% Similarity=0.676 Sum_probs=13.3
Q ss_pred CCCCEEEcCCCCCCcCCc
Q 007237 326 HSLNELYLSKNNFVTLPA 343 (611)
Q Consensus 326 ~~L~~L~L~~n~l~~lp~ 343 (611)
++|+.|++++|+++++|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 367778888887777775
No 85
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=62.16 E-value=0.45 Score=44.93 Aligned_cols=58 Identities=19% Similarity=0.097 Sum_probs=32.2
Q ss_pred CCCcEEEcCCCCccccCccccCCCCCcEEeccCCCCCCCCcccCCCCCCCCEEEecCCC
Q 007237 90 ECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCS 148 (611)
Q Consensus 90 ~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~ 148 (611)
..|..|+++.+.+..+|..++....++.+++.. +..+..|.++++.+.++.+++.++.
T Consensus 65 t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~-n~~~~~p~s~~k~~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 65 TRLVRLDLSKNQIKFLPKDAKQQRETVNAASHK-NNHSQQPKSQKKEPHPKKNEQKKTE 122 (326)
T ss_pred HHHHHHhccHhhHhhChhhHHHHHHHHHHHhhc-cchhhCCccccccCCcchhhhccCc
Confidence 344455555555555555555555555555544 3355556666666666666665544
No 86
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=60.10 E-value=0.3 Score=46.08 Aligned_cols=84 Identities=17% Similarity=0.118 Sum_probs=45.4
Q ss_pred CCCCCCcEEEcCCCCccccCccccCCCCCcEEeccCCCCCCCCcccCCCCCCCCEEEecCCCCCcccccccCCCCCCCEE
Q 007237 87 GSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSEL 166 (611)
Q Consensus 87 ~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~~~~l~~L~~L 166 (611)
......+.||++.+.+..+-..+..++.|..|+++. +.+.-+|..++++..++.+++..| ..+..|...+..++++++
T Consensus 39 ~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sk-nq~~~~~~d~~q~~e~~~~~~~~n-~~~~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSK-NQIKFLPKDAKQQRETVNAASHKN-NHSQQPKSQKKEPHPKKN 116 (326)
T ss_pred hccceeeeehhhhhHHHhhccchHHHHHHHHHhccH-hhHhhChhhHHHHHHHHHHHhhcc-chhhCCccccccCCcchh
Confidence 344555666666666666666666666666666665 334555555555555555554442 334444444444545444
Q ss_pred eecCcc
Q 007237 167 NLDGTS 172 (611)
Q Consensus 167 ~L~~~~ 172 (611)
++.++.
T Consensus 117 e~k~~~ 122 (326)
T KOG0473|consen 117 EQKKTE 122 (326)
T ss_pred hhccCc
Confidence 444443
No 87
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=59.10 E-value=8.2 Score=22.99 Aligned_cols=16 Identities=38% Similarity=0.517 Sum_probs=10.2
Q ss_pred CCCCEEEcCCCCCCcC
Q 007237 326 HSLNELYLSKNNFVTL 341 (611)
Q Consensus 326 ~~L~~L~L~~n~l~~l 341 (611)
.+|+.|++++|+++.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 4667777777766544
No 88
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=57.39 E-value=5.2 Score=22.97 Aligned_cols=14 Identities=36% Similarity=0.437 Sum_probs=6.7
Q ss_pred CCCCEEEcCCCCCC
Q 007237 326 HSLNELYLSKNNFV 339 (611)
Q Consensus 326 ~~L~~L~L~~n~l~ 339 (611)
++|+.|+|++|++.
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 45666666666543
No 89
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=38.47 E-value=27 Score=20.99 Aligned_cols=14 Identities=50% Similarity=0.489 Sum_probs=9.4
Q ss_pred CCCCEEEcCCCCCC
Q 007237 326 HSLNELYLSKNNFV 339 (611)
Q Consensus 326 ~~L~~L~L~~n~l~ 339 (611)
++|++|+|++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 45677777777664
No 90
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=26.78 E-value=82 Score=21.21 Aligned_cols=11 Identities=18% Similarity=0.362 Sum_probs=7.1
Q ss_pred CCCCcceeeec
Q 007237 368 LPPNIIFVKVN 378 (611)
Q Consensus 368 lp~~L~~L~i~ 378 (611)
+|++++.|.+.
T Consensus 32 lP~sl~~L~fg 42 (44)
T PF05725_consen 32 LPNSLKSLSFG 42 (44)
T ss_pred cCCCceEEEee
Confidence 66677766654
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=22.06 E-value=39 Score=36.49 Aligned_cols=19 Identities=21% Similarity=0.586 Sum_probs=15.0
Q ss_pred CcCCCcEEEEEEEEEEecC
Q 007237 463 LYNMNKIVGYAICCVFHVP 481 (611)
Q Consensus 463 ~~~~~~~~g~~~c~v~~~~ 481 (611)
|+...+.+||++--||...
T Consensus 440 ~~~~~~~l~ftv~G~f~d~ 458 (585)
T KOG3763|consen 440 WYQTGNLLGFTVAGVFRDG 458 (585)
T ss_pred eecccceEEEEEEEEeecC
Confidence 7765588999998888864
Done!