Query 007237
Match_columns 611
No_of_seqs 461 out of 4005
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 20:42:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007237.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007237hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4eco_A Uncharacterized protein 100.0 1.4E-34 4.7E-39 322.9 24.9 340 31-382 201-599 (636)
2 3rgz_A Protein brassinosteroid 100.0 1.8E-34 6E-39 329.3 25.4 387 11-404 267-738 (768)
3 3rgz_A Protein brassinosteroid 100.0 1.5E-33 5E-38 321.7 23.5 376 9-387 219-697 (768)
4 4ecn_A Leucine-rich repeat pro 100.0 9.1E-33 3.1E-37 314.1 28.3 340 7-383 442-840 (876)
5 4ecn_A Leucine-rich repeat pro 100.0 1.4E-32 4.7E-37 312.7 27.0 348 31-406 443-840 (876)
6 4eco_A Uncharacterized protein 100.0 2.1E-33 7.1E-38 313.4 19.0 343 7-361 200-599 (636)
7 3t6q_A CD180 antigen; protein- 100.0 2.4E-31 8.1E-36 296.0 33.5 180 180-360 274-460 (606)
8 3vq2_A TLR4, TOLL-like recepto 100.0 4.3E-31 1.5E-35 293.9 28.0 215 159-380 283-507 (606)
9 3vq2_A TLR4, TOLL-like recepto 100.0 1.5E-30 5.1E-35 289.5 32.2 377 13-403 32-507 (606)
10 3t6q_A CD180 antigen; protein- 100.0 1.3E-30 4.3E-35 290.1 29.5 266 91-380 255-533 (606)
11 4fmz_A Internalin; leucine ric 100.0 4.3E-30 1.5E-34 265.5 26.2 305 9-360 40-344 (347)
12 2z63_A TOLL-like receptor 4, v 100.0 2.5E-30 8.7E-35 285.4 26.0 377 14-404 29-529 (570)
13 3v47_A TOLL-like receptor 5B a 100.0 2.6E-30 8.7E-35 277.3 23.4 340 13-381 30-406 (455)
14 2z63_A TOLL-like receptor 4, v 100.0 3.7E-30 1.3E-34 284.1 23.9 378 15-403 9-504 (570)
15 2z7x_B TOLL-like receptor 1, v 100.0 1.6E-29 5.6E-34 275.8 26.7 124 13-149 21-150 (520)
16 2z81_A CD282 antigen, TOLL-lik 100.0 5.3E-30 1.8E-34 281.6 21.0 340 13-380 26-441 (549)
17 2z7x_B TOLL-like receptor 1, v 100.0 8E-30 2.7E-34 278.3 21.9 338 5-381 37-479 (520)
18 2z81_A CD282 antigen, TOLL-lik 100.0 2.1E-29 7.2E-34 276.9 24.6 358 6-403 43-507 (549)
19 3j0a_A TOLL-like receptor 5; m 100.0 3.9E-29 1.3E-33 288.1 27.8 220 161-381 266-537 (844)
20 1o6v_A Internalin A; bacterial 100.0 8.9E-29 3.1E-33 266.1 28.4 319 11-381 44-364 (466)
21 3j0a_A TOLL-like receptor 5; m 100.0 1.3E-28 4.6E-33 283.6 31.5 334 11-377 22-408 (844)
22 2id5_A Lingo-1, leucine rich r 100.0 2.2E-28 7.5E-33 264.0 30.3 314 16-360 14-331 (477)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2E-28 6.8E-33 269.8 29.7 148 12-173 30-181 (562)
24 1o6v_A Internalin A; bacterial 100.0 2E-28 6.8E-33 263.4 28.8 325 6-381 61-386 (466)
25 1ziw_A TOLL-like receptor 3; i 100.0 2.3E-27 7.9E-32 267.4 38.5 270 115-387 250-576 (680)
26 1ziw_A TOLL-like receptor 3; i 100.0 5.6E-28 1.9E-32 272.5 32.4 350 5-360 41-465 (680)
27 3v47_A TOLL-like receptor 5B a 100.0 1.1E-28 3.8E-33 264.6 24.6 355 16-403 13-405 (455)
28 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 5.1E-28 1.7E-32 266.5 28.8 329 13-380 52-507 (562)
29 4fmz_A Internalin; leucine ric 100.0 4.8E-28 1.6E-32 250.1 26.7 307 27-381 35-344 (347)
30 3bz5_A Internalin-J, INLJ; leu 100.0 9E-28 3.1E-32 256.8 29.5 306 8-360 37-350 (457)
31 3o6n_A APL1; leucine-rich repe 100.0 3.7E-27 1.3E-31 247.6 27.4 304 34-380 43-349 (390)
32 3o6n_A APL1; leucine-rich repe 100.0 2.5E-27 8.5E-32 248.8 24.3 304 11-360 43-350 (390)
33 2id5_A Lingo-1, leucine rich r 100.0 5.4E-27 1.8E-31 253.1 26.7 298 13-340 32-334 (477)
34 1jl5_A Outer protein YOPM; leu 100.0 2.4E-26 8.2E-31 245.5 30.5 334 7-381 6-368 (454)
35 3oja_B Anopheles plasmodium-re 100.0 1.1E-26 3.8E-31 257.5 27.4 305 34-381 49-356 (597)
36 3oja_B Anopheles plasmodium-re 99.9 1.5E-26 5.2E-31 256.4 24.6 304 11-360 49-356 (597)
37 1xku_A Decorin; proteoglycan, 99.9 7E-26 2.4E-30 232.2 27.4 288 14-360 32-330 (330)
38 3bz5_A Internalin-J, INLJ; leu 99.9 5.8E-26 2E-30 242.8 27.3 292 65-408 41-343 (457)
39 1jl5_A Outer protein YOPM; leu 99.9 2E-25 6.8E-30 238.4 30.3 309 15-375 73-382 (454)
40 4g8a_A TOLL-like receptor 4; l 99.9 3.3E-25 1.1E-29 247.4 30.4 359 14-381 53-578 (635)
41 2ft3_A Biglycan; proteoglycan, 99.9 1.8E-25 6.2E-30 229.3 25.6 283 37-360 34-331 (332)
42 1xku_A Decorin; proteoglycan, 99.9 1.2E-24 4.1E-29 223.0 29.6 262 37-361 32-305 (330)
43 1ogq_A PGIP-2, polygalacturona 99.9 8.7E-27 3E-31 237.0 12.9 251 66-365 50-307 (313)
44 2ft3_A Biglycan; proteoglycan, 99.9 7.2E-25 2.5E-29 224.8 26.5 294 14-337 34-331 (332)
45 4fcg_A Uncharacterized protein 99.9 1.2E-25 4.1E-30 230.0 18.9 223 35-266 80-312 (328)
46 1ogq_A PGIP-2, polygalacturona 99.9 4E-26 1.4E-30 232.1 13.3 252 6-266 38-302 (313)
47 4g8a_A TOLL-like receptor 4; l 99.9 1.9E-24 6.6E-29 241.2 28.1 328 4-360 67-578 (635)
48 4fcg_A Uncharacterized protein 99.9 1.5E-24 5E-29 221.9 20.0 176 65-243 80-264 (328)
49 2z80_A TOLL-like receptor 2, v 99.9 6E-24 2E-28 219.9 15.5 251 91-360 53-312 (353)
50 3zyj_A Leucine-rich repeat-con 99.9 4.1E-22 1.4E-26 212.5 26.3 242 93-360 46-290 (440)
51 3zyi_A Leucine-rich repeat-con 99.9 4.7E-22 1.6E-26 212.8 24.8 242 93-360 57-301 (452)
52 1z7x_W Ribonuclease inhibitor; 99.9 4.3E-26 1.5E-30 244.8 -7.7 348 13-381 3-409 (461)
53 3g06_A SSPH2 (leucine-rich rep 99.9 2.6E-21 8.8E-26 213.1 30.1 256 14-339 41-297 (622)
54 2z66_A Variable lymphocyte rec 99.9 3E-22 1E-26 202.7 20.9 171 70-245 11-188 (306)
55 2z66_A Variable lymphocyte rec 99.9 2.7E-22 9.3E-27 203.1 20.1 242 16-266 10-259 (306)
56 1ozn_A Reticulon 4 receptor; N 99.9 2.8E-22 9.7E-27 200.8 18.8 201 66-266 32-236 (285)
57 3g06_A SSPH2 (leucine-rich rep 99.9 2.1E-21 7.3E-26 213.7 27.3 258 36-362 40-297 (622)
58 3o53_A Protein LRIM1, AGAP0063 99.9 7.1E-24 2.4E-28 215.9 6.8 243 65-365 33-278 (317)
59 1z7x_W Ribonuclease inhibitor; 99.9 3.2E-26 1.1E-30 245.8 -11.4 331 9-360 24-409 (461)
60 2z80_A TOLL-like receptor 2, v 99.9 8.1E-23 2.8E-27 211.4 14.3 276 35-342 30-317 (353)
61 3zyi_A Leucine-rich repeat-con 99.9 2.6E-21 8.9E-26 207.0 25.0 242 15-266 56-301 (452)
62 3zyj_A Leucine-rich repeat-con 99.9 2.9E-21 9.8E-26 205.9 25.1 243 14-266 44-290 (440)
63 1wwl_A Monocyte differentiatio 99.9 1.4E-23 4.9E-28 213.1 4.8 199 136-360 94-307 (312)
64 1ozn_A Reticulon 4 receptor; N 99.9 6.9E-21 2.4E-25 190.7 23.2 63 297-360 173-236 (285)
65 1wwl_A Monocyte differentiatio 99.9 1.1E-22 3.9E-27 206.5 8.7 249 9-266 39-307 (312)
66 3ogk_B Coronatine-insensitive 99.9 6E-24 2.1E-28 235.5 -5.5 81 300-381 435-524 (592)
67 3o53_A Protein LRIM1, AGAP0063 99.8 4.4E-21 1.5E-25 195.2 13.4 258 92-384 12-276 (317)
68 3ogk_B Coronatine-insensitive 99.8 1.2E-23 4.1E-28 233.1 -6.4 345 11-360 110-524 (592)
69 3oja_A Leucine-rich immune mol 99.8 3.1E-21 1.1E-25 207.9 12.1 240 65-362 33-275 (487)
70 3oja_A Leucine-rich immune mol 99.8 2.8E-20 9.6E-25 200.4 15.9 213 114-361 35-249 (487)
71 2p1m_B Transport inhibitor res 99.8 1.9E-23 6.4E-28 231.6 -9.6 84 297-382 428-518 (594)
72 1p9a_G Platelet glycoprotein I 99.8 1.1E-18 3.8E-23 174.9 22.6 199 87-360 7-206 (290)
73 1p9a_G Platelet glycoprotein I 99.8 1.1E-18 3.8E-23 174.9 22.6 195 109-379 6-204 (290)
74 2o6q_A Variable lymphocyte rec 99.8 1.3E-18 4.3E-23 172.8 22.3 177 67-244 38-217 (270)
75 2z62_A TOLL-like receptor 4, v 99.8 4.4E-19 1.5E-23 176.6 18.6 199 67-266 29-235 (276)
76 2z62_A TOLL-like receptor 4, v 99.8 8.1E-19 2.8E-23 174.7 19.3 202 138-360 29-235 (276)
77 2xwt_C Thyrotropin receptor; s 99.8 4E-19 1.4E-23 173.0 16.0 196 66-266 31-237 (239)
78 2p1m_B Transport inhibitor res 99.8 8.7E-23 3E-27 226.2 -11.6 387 9-405 62-518 (594)
79 2o6q_A Variable lymphocyte rec 99.8 5.2E-18 1.8E-22 168.3 24.0 101 92-195 18-120 (270)
80 3rfs_A Internalin B, repeat mo 99.8 5.2E-19 1.8E-23 175.7 14.9 209 30-255 35-246 (272)
81 3rfs_A Internalin B, repeat mo 99.8 6.9E-19 2.4E-23 174.8 14.9 174 65-265 40-215 (272)
82 2ast_B S-phase kinase-associat 99.8 1.6E-20 5.6E-25 192.5 3.1 196 67-265 48-257 (336)
83 2xwt_C Thyrotropin receptor; s 99.8 1.8E-18 6.2E-23 168.3 17.0 209 79-361 23-238 (239)
84 4glp_A Monocyte differentiatio 99.8 9.1E-19 3.1E-23 177.5 14.3 198 65-266 90-305 (310)
85 1h6u_A Internalin H; cell adhe 99.8 3E-18 1E-22 173.3 17.2 196 32-247 37-232 (308)
86 2ast_B S-phase kinase-associat 99.8 2.2E-19 7.5E-24 184.1 5.6 241 91-360 48-304 (336)
87 1h6u_A Internalin H; cell adhe 99.8 1E-17 3.6E-22 169.4 17.6 190 64-266 39-228 (308)
88 2ca6_A RAN GTPase-activating p 99.8 4.8E-20 1.7E-24 192.9 -0.7 64 297-360 240-314 (386)
89 4ay9_X Follicle-stimulating ho 99.7 5.7E-17 2E-21 167.1 20.4 224 69-367 12-241 (350)
90 2ca6_A RAN GTPase-activating p 99.7 4.3E-20 1.5E-24 193.3 -3.2 232 32-266 28-314 (386)
91 4glp_A Monocyte differentiatio 99.7 1.8E-17 6.2E-22 167.9 13.5 199 138-360 92-305 (310)
92 3m19_A Variable lymphocyte rec 99.7 1.7E-16 5.8E-21 155.6 19.1 155 67-245 36-192 (251)
93 3m19_A Variable lymphocyte rec 99.7 2.6E-16 8.9E-21 154.2 20.1 175 91-267 15-191 (251)
94 3goz_A Leucine-rich repeat-con 99.7 6.2E-19 2.1E-23 182.8 0.4 176 71-246 3-210 (362)
95 4ay9_X Follicle-stimulating ho 99.7 3.6E-16 1.2E-20 161.1 18.4 198 36-266 30-234 (350)
96 3cvr_A Invasion plasmid antige 99.7 2.2E-15 7.6E-20 163.9 20.9 177 66-267 59-242 (571)
97 3goz_A Leucine-rich repeat-con 99.7 9.1E-18 3.1E-22 174.0 0.9 247 17-266 2-295 (362)
98 1h6t_A Internalin B; cell adhe 99.6 1.5E-15 5.2E-20 152.1 15.8 171 65-247 45-215 (291)
99 2o6s_A Variable lymphocyte rec 99.6 2.1E-15 7.2E-20 143.2 15.1 159 66-232 28-189 (208)
100 3cvr_A Invasion plasmid antige 99.6 8.3E-15 2.8E-19 159.4 21.3 188 114-348 60-253 (571)
101 1h6t_A Internalin B; cell adhe 99.6 4.3E-15 1.5E-19 148.8 15.8 170 86-266 42-211 (291)
102 1m9s_A Internalin B; cell inva 99.6 2.2E-15 7.7E-20 165.6 15.0 172 31-220 38-209 (605)
103 1m9s_A Internalin B; cell inva 99.6 1.9E-15 6.5E-20 166.1 14.3 173 64-248 41-213 (605)
104 4ezg_A Putative uncharacterize 99.6 2.6E-15 8.9E-20 141.3 12.2 151 87-243 41-192 (197)
105 2o6s_A Variable lymphocyte rec 99.6 1.3E-14 4.5E-19 137.6 16.7 107 159-265 50-158 (208)
106 4ezg_A Putative uncharacterize 99.6 4.3E-15 1.5E-19 139.8 12.5 153 108-266 39-192 (197)
107 2v9t_B SLIT homolog 2 protein 99.6 3.5E-14 1.2E-18 135.9 16.5 150 93-245 14-165 (220)
108 1dce_A Protein (RAB geranylger 99.6 8E-17 2.7E-21 176.0 -3.9 204 32-262 345-567 (567)
109 2v9t_B SLIT homolog 2 protein 99.6 7.7E-14 2.6E-18 133.6 17.4 149 164-360 14-163 (220)
110 2xot_A Amphoterin-induced prot 99.5 1.8E-14 6.3E-19 148.9 12.3 147 39-195 21-174 (361)
111 2v70_A SLIT-2, SLIT homolog 2 99.5 9E-14 3.1E-18 133.1 16.1 111 135-245 55-166 (220)
112 3e6j_A Variable lymphocyte rec 99.5 1.5E-13 5.1E-18 132.4 17.4 86 158-244 85-171 (229)
113 3e6j_A Variable lymphocyte rec 99.5 1.5E-13 5.2E-18 132.4 17.3 148 164-360 22-170 (229)
114 1xeu_A Internalin C; cellular 99.5 2.1E-14 7.2E-19 141.5 10.6 171 34-247 17-187 (263)
115 2v70_A SLIT-2, SLIT homolog 2 99.5 1.8E-13 6.1E-18 131.0 16.6 128 92-220 34-165 (220)
116 1dce_A Protein (RAB geranylger 99.5 1.6E-15 5.5E-20 165.7 2.0 194 10-215 346-567 (567)
117 1xeu_A Internalin C; cellular 99.5 2.2E-14 7.7E-19 141.3 10.0 166 89-266 18-183 (263)
118 2xot_A Amphoterin-induced prot 99.5 1.3E-13 4.5E-18 142.5 14.9 169 94-266 22-200 (361)
119 2ell_A Acidic leucine-rich nuc 99.5 1.9E-13 6.6E-18 124.8 10.4 129 65-195 23-158 (168)
120 4b8c_D Glucose-repressible alc 99.5 1.5E-14 5.1E-19 162.9 3.5 196 36-242 173-369 (727)
121 2ell_A Acidic leucine-rich nuc 99.4 3.5E-13 1.2E-17 123.0 10.4 129 88-218 22-157 (168)
122 2je0_A Acidic leucine-rich nuc 99.4 2.3E-13 7.8E-18 121.6 8.7 127 65-192 16-148 (149)
123 4b8c_D Glucose-repressible alc 99.4 1.3E-13 4.5E-18 155.3 4.7 116 128-246 215-330 (727)
124 2je0_A Acidic leucine-rich nuc 99.4 6.2E-13 2.1E-17 118.8 8.0 126 89-216 16-148 (149)
125 1w8a_A SLIT protein; signaling 99.4 5.3E-12 1.8E-16 118.0 13.3 124 93-219 11-137 (192)
126 1w8a_A SLIT protein; signaling 99.3 8.9E-12 3E-16 116.4 14.0 128 69-199 11-141 (192)
127 2wfh_A SLIT homolog 2 protein 99.3 2.2E-11 7.4E-16 113.9 14.0 32 91-122 32-63 (193)
128 2wfh_A SLIT homolog 2 protein 99.3 3E-11 1E-15 112.8 14.5 125 93-220 13-138 (193)
129 3sb4_A Hypothetical leucine ri 99.3 1.9E-11 6.5E-16 124.5 13.1 242 12-262 48-328 (329)
130 1a9n_A U2A', U2A'; complex (nu 99.3 9.9E-12 3.4E-16 114.3 8.6 126 65-194 18-150 (176)
131 1a9n_A U2A', U2A'; complex (nu 99.2 1.3E-11 4.3E-16 113.6 8.8 129 86-218 15-150 (176)
132 2o6r_A Variable lymphocyte rec 99.2 8.8E-11 3E-15 108.0 14.2 98 94-194 11-110 (177)
133 3sb4_A Hypothetical leucine ri 99.2 7E-12 2.4E-16 127.7 7.0 282 34-355 23-327 (329)
134 2o6r_A Variable lymphocyte rec 99.2 3.2E-10 1.1E-14 104.2 15.2 129 115-246 9-138 (177)
135 1ds9_A Outer arm dynein; leuci 99.2 1.4E-13 4.9E-18 129.4 -8.2 114 84-201 42-157 (198)
136 4fdw_A Leucine rich hypothetic 99.2 2.1E-09 7.3E-14 112.0 22.4 189 12-240 112-308 (401)
137 4fs7_A Uncharacterized protein 99.1 7E-09 2.4E-13 108.2 23.2 232 133-408 158-392 (394)
138 1ds9_A Outer arm dynein; leuci 99.1 1.3E-12 4.5E-17 122.7 -6.4 107 65-176 47-155 (198)
139 4fdw_A Leucine rich hypothetic 99.0 9.6E-09 3.3E-13 107.1 19.7 240 5-266 128-381 (401)
140 3g39_A Variable lymphocyte rec 99.0 2.9E-09 9.9E-14 97.1 12.3 101 93-195 12-113 (170)
141 2r9u_A Variable lymphocyte rec 99.0 2.5E-09 8.6E-14 97.9 11.9 99 94-194 16-115 (174)
142 3g39_A Variable lymphocyte rec 98.9 5.4E-09 1.8E-13 95.3 12.2 104 139-245 11-115 (170)
143 2r9u_A Variable lymphocyte rec 98.9 5.5E-09 1.9E-13 95.6 12.2 103 140-245 15-118 (174)
144 4fs7_A Uncharacterized protein 98.9 1.4E-07 4.8E-12 98.3 22.2 324 5-386 63-393 (394)
145 2ifg_A High affinity nerve gro 98.7 4.4E-08 1.5E-12 100.2 11.1 100 95-195 13-114 (347)
146 3un9_A NLR family member X1; l 98.7 7.3E-10 2.5E-14 114.4 -2.6 161 65-245 71-252 (372)
147 4gt6_A Cell surface protein; l 98.7 3.8E-06 1.3E-10 87.3 24.5 305 7-360 57-368 (394)
148 2ifg_A High affinity nerve gro 98.6 1E-07 3.5E-12 97.4 11.1 94 172-266 20-114 (347)
149 3un9_A NLR family member X1; l 98.6 3.6E-09 1.2E-13 109.2 -0.2 131 137-267 101-251 (372)
150 2ra8_A Uncharacterized protein 98.5 4.1E-08 1.4E-12 100.6 5.0 57 109-168 168-226 (362)
151 4gt6_A Cell surface protein; l 98.5 8.5E-06 2.9E-10 84.7 20.7 301 4-357 78-386 (394)
152 4h09_A Hypothetical leucine ri 98.5 0.00011 3.9E-09 75.6 28.6 37 297-334 282-318 (379)
153 2ra8_A Uncharacterized protein 98.4 9.6E-08 3.3E-12 97.8 4.7 136 128-266 163-318 (362)
154 4h09_A Hypothetical leucine ri 98.3 0.00012 4.1E-09 75.4 25.3 282 11-334 44-341 (379)
155 1io0_A Tropomodulin; LRR prote 97.8 4.4E-06 1.5E-10 76.9 1.8 59 65-123 35-103 (185)
156 1io0_A Tropomodulin; LRR prote 97.7 1.1E-05 3.6E-10 74.3 2.1 40 85-124 31-76 (185)
157 3e4g_A ATP synthase subunit S, 97.7 6.2E-06 2.1E-10 74.4 -0.0 83 301-385 61-154 (176)
158 3e4g_A ATP synthase subunit S, 97.6 3.1E-05 1.1E-09 69.8 4.0 39 185-223 115-154 (176)
159 3rw6_A Nuclear RNA export fact 97.5 4.7E-05 1.6E-09 73.9 4.2 78 88-167 168-257 (267)
160 3rw6_A Nuclear RNA export fact 97.3 0.00014 4.8E-09 70.5 4.4 78 159-238 168-257 (267)
161 1pgv_A TMD-1, tropomodulin TMD 94.6 0.014 4.7E-07 53.5 2.3 83 65-147 40-136 (197)
162 1pgv_A TMD-1, tropomodulin TMD 94.4 0.017 6E-07 52.8 2.7 58 136-193 69-135 (197)
163 3rfe_A Platelet glycoprotein I 94.4 0.089 3.1E-06 44.6 6.9 55 304-360 11-66 (130)
164 3rfe_A Platelet glycoprotein I 91.5 0.35 1.2E-05 40.9 6.4 8 139-146 33-40 (130)
165 2lz0_A Uncharacterized protein 42.8 26 0.00088 27.6 4.2 40 6-45 13-52 (100)
166 2lz0_A Uncharacterized protein 23.0 30 0.001 27.1 1.4 29 379-407 18-46 (100)
No 1
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.4e-34 Score=322.95 Aligned_cols=340 Identities=16% Similarity=0.193 Sum_probs=273.8
Q ss_pred CCCCCcccccccccccccccc------------------cCccccccCccccCCCccEEEecCCcCcCcCCcccCCCCCC
Q 007237 31 DFTEAPNLEELYLEGCTKLRK------------------VHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECL 92 (611)
Q Consensus 31 ~~~~~~~L~~L~L~~c~~l~~------------------i~~s~~~l~~L~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L 92 (611)
.+..+++|++|+|++|. ++. +|.+++. ..+++|++|++++|.+.+.+|..++++++|
T Consensus 201 ~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~----~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 275 (636)
T 4eco_A 201 AVMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKW----DNLKDLTDVEVYNCPNLTKLPTFLKALPEM 275 (636)
T ss_dssp GGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCG----GGCTTCCEEEEECCTTCSSCCTTTTTCSSC
T ss_pred HHhcccCCCEEECcCCc-cccccccccccccccchhcccCchhhhh----cccCCCCEEEecCCcCCccChHHHhcCCCC
Confidence 37889999999999985 666 7776650 137889999999999999999999999999
Q ss_pred cEEEcCCCC-cc--ccCccccCC------CCCcEEeccCCCCCCCCcc--cCCCCCCCCEEEecCCCCCcccccccCCCC
Q 007237 93 QELLLDGTD-IK--ELPLSIEHL------FGLVQLTLNDCKNLSSLPV--AISSFQCLRNLKLSGCSKLKKFPQIVTTME 161 (611)
Q Consensus 93 ~~L~L~~~~-i~--~lp~~~~~l------~~L~~L~L~~c~~l~~lp~--~l~~l~~L~~L~L~~~~~l~~~p~~~~~l~ 161 (611)
++|++++|. ++ .+|..++.+ ++|++|++++|. +..+|. .++++++|++|++++|...+.+| .++.++
T Consensus 276 ~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~ 353 (636)
T 4eco_A 276 QLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEI 353 (636)
T ss_dssp CEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEE
T ss_pred CEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCC
Confidence 999999998 88 499888876 999999999976 459998 89999999999999988776888 888999
Q ss_pred CCCEEeecCccCCCcCcccCCCCC-CCEEeccCCcCCcccccCccCCC--CCCEEEecCCCCCcccCcccC-------CC
Q 007237 162 DLSELNLDGTSITEVPSSIELLPG-LELLNLNDCKNFARVPSSINGLK--SLKTLNLSGCCKLENVPDTLG-------QV 231 (611)
Q Consensus 162 ~L~~L~L~~~~i~~l~~~l~~l~~-L~~L~L~~~~~~~~lp~~i~~l~--~L~~L~l~~c~~l~~~p~~l~-------~l 231 (611)
+|++|++++|.++.+|..+..+++ |+.|++++|... .+|..+..++ +|+.|++++|...+..|..+. .+
T Consensus 354 ~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~ 432 (636)
T 4eco_A 354 KLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKG 432 (636)
T ss_dssp EESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCC
T ss_pred CCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccC
Confidence 999999999999999999999999 999999999876 7888877655 899999999999888888887 78
Q ss_pred CCccEEeccCCCcccCCccccc-cCCCcEEEcCCCCCCCCCCcc-cccc-------cccccCCccchhhccCCC-CC--C
Q 007237 232 ESLEELDISETAVRRPPSSVFL-MKNLRTLSFSGCNGPPSSASW-HLHL-------PFNLMGKSSCLVALMLPS-LS--G 299 (611)
Q Consensus 232 ~~L~~L~l~~~~~~~~~~~~~~-l~~L~~L~l~~c~~~~~~~~~-~~~~-------~~~~~~~~~~~~~~~l~~-l~--~ 299 (611)
++|+.|++++|.+..+|..+.. +++|++|++++|......... .... .+..+....+... .+|. +. .
T Consensus 433 ~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~ 511 (636)
T 4eco_A 433 INVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATT 511 (636)
T ss_dssp CCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTT
T ss_pred CCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhcc
Confidence 8999999999999999887654 899999999999854211111 1000 2222333333222 3333 44 7
Q ss_pred CCCCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcC------CCCCC-cCCcccccCCCcCeeecccccccCcCCC-CCCC
Q 007237 300 LRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLS------KNNFV-TLPASINSLLNLKELEMEDCKRLQFLPQ-LPPN 371 (611)
Q Consensus 300 l~~L~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~L~------~n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~lp~-lp~~ 371 (611)
+++|+.|++++|.+.. +|..+..+++|+.|+|+ +|++. .+|..+..+++|++|+|++|+. ..+|. +.++
T Consensus 512 l~~L~~L~Ls~N~l~~--ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~~~ 588 (636)
T 4eco_A 512 LPYLVGIDLSYNSFSK--FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKITPN 588 (636)
T ss_dssp CTTCCEEECCSSCCSS--CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCCTT
T ss_pred CCCcCEEECCCCCCCC--cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHhCc
Confidence 8888888888888853 78888888888888884 45544 7788888888888888888874 77775 6678
Q ss_pred cceeeecCCCC
Q 007237 372 IIFVKVNGCSS 382 (611)
Q Consensus 372 L~~L~i~~C~s 382 (611)
|+.|++++++-
T Consensus 589 L~~L~Ls~N~l 599 (636)
T 4eco_A 589 ISVLDIKDNPN 599 (636)
T ss_dssp CCEEECCSCTT
T ss_pred CCEEECcCCCC
Confidence 88888888764
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.8e-34 Score=329.34 Aligned_cols=387 Identities=21% Similarity=0.200 Sum_probs=264.4
Q ss_pred CCCcccEEEccCCCCCCcCCC-CCC-CcccccccccccccccccCccccccCccccCCCccEEEecCCcCcCcCCcc-cC
Q 007237 11 HLNMLKVMKLSHSENLIKTPD-FTE-APNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHV-VG 87 (611)
Q Consensus 11 ~l~~L~~L~Ls~~~~l~~~~~-~~~-~~~L~~L~L~~c~~l~~i~~s~~~l~~L~~l~~L~~L~Ls~~~~~~~lp~~-l~ 87 (611)
.+++|++|++++|+....+|. +.. +++|++|++++|.....+|..++. +++|++|++++|.+.+.+|.. ++
T Consensus 267 ~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~------l~~L~~L~L~~n~l~~~ip~~~l~ 340 (768)
T 3rgz_A 267 PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS------CSLLESLALSSNNFSGELPMDTLL 340 (768)
T ss_dssp CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGG------CTTCCEEECCSSEEEEECCHHHHT
T ss_pred ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhc------CCCccEEECCCCcccCcCCHHHHh
Confidence 566677777777665444443 333 366777777666433344444333 444555555555444444433 44
Q ss_pred CCCCCcEEEcCCCCcc-ccC-------------------------ccccC--CCCCcEEeccCCCCCCCCcccCCCCCCC
Q 007237 88 SMECLQELLLDGTDIK-ELP-------------------------LSIEH--LFGLVQLTLNDCKNLSSLPVAISSFQCL 139 (611)
Q Consensus 88 ~l~~L~~L~L~~~~i~-~lp-------------------------~~~~~--l~~L~~L~L~~c~~l~~lp~~l~~l~~L 139 (611)
.+++|++|++++|.+. .+| ..+.. +++|++|++++|.....+|..+.++++|
T Consensus 341 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L 420 (768)
T 3rgz_A 341 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSEL 420 (768)
T ss_dssp TCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTC
T ss_pred cCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCC
Confidence 4444555555444443 334 33333 4556666666665555677777778888
Q ss_pred CEEEecCCCCCcccccccCCCCCCCEEeecCccCC-CcCcccCCCCCCCEEeccCCcCCcccccCccCCCCCCEEEecCC
Q 007237 140 RNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSIT-EVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGC 218 (611)
Q Consensus 140 ~~L~L~~~~~l~~~p~~~~~l~~L~~L~L~~~~i~-~l~~~l~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~c 218 (611)
+.|++++|...+..|..++.+++|++|++++|.+. .+|..+..+++|+.|++++|...+.+|..+..+++|+.|++++|
T Consensus 421 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N 500 (768)
T 3rgz_A 421 VSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNN 500 (768)
T ss_dssp CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS
T ss_pred CEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCC
Confidence 88888887776777888888888888888888887 57777888888888888888888888888888888888888888
Q ss_pred CCCcccCcccCCCCCccEEeccCCCcc-cCCccccccCCCcEEEcCCCCCCCCCCccccccc----cc------------
Q 007237 219 CKLENVPDTLGQVESLEELDISETAVR-RPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLP----FN------------ 281 (611)
Q Consensus 219 ~~l~~~p~~l~~l~~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~----~~------------ 281 (611)
...+.+|..++.+++|+.|++++|.+. .+|..+..+++|+.|++++|.............. ..
T Consensus 501 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~ 580 (768)
T 3rgz_A 501 RLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKN 580 (768)
T ss_dssp CCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEEC
T ss_pred ccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccc
Confidence 888888888888888888888888887 6788888888888888888863211111000000 00
Q ss_pred ---------------cc----------------C-CccchhhccCCCCCCCCCCCEEeccCCCCCCCCCCCCCCCCCCCC
Q 007237 282 ---------------LM----------------G-KSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLN 329 (611)
Q Consensus 282 ---------------~~----------------~-~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~L~ 329 (611)
.. . ......+...+.+..+++|+.|++++|+++ +.+|..++.+++|+
T Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~-g~ip~~l~~l~~L~ 659 (768)
T 3rgz_A 581 DGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLS-GYIPKEIGSMPYLF 659 (768)
T ss_dssp CSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCB-SCCCGGGGGCTTCC
T ss_pred ccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCccc-ccCCHHHhccccCC
Confidence 00 0 001112223345788899999999999996 78999999999999
Q ss_pred EEEcCCCCCC-cCCcccccCCCcCeeecccccccCcCCCC---CCCcceeeecCCCCcccccCcccccccCCccccccc
Q 007237 330 ELYLSKNNFV-TLPASINSLLNLKELEMEDCKRLQFLPQL---PPNIIFVKVNGCSSLVTLLGALKLCKSNGIVIECID 404 (611)
Q Consensus 330 ~L~L~~n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~lp~l---p~~L~~L~i~~C~sL~~l~~~~~~~~l~~l~~~~c~ 404 (611)
.|+|++|+++ .+|..++.+++|+.|+|++|+-...+|.. .++|++|+++++.--..++....+.......|.+++
T Consensus 660 ~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~ 738 (768)
T 3rgz_A 660 ILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNP 738 (768)
T ss_dssp EEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCT
T ss_pred EEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCc
Confidence 9999999999 89999999999999999999876677753 357889999888655555543333333333344433
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.5e-33 Score=321.71 Aligned_cols=376 Identities=22% Similarity=0.220 Sum_probs=225.4
Q ss_pred ccCCCcccEEEccCCCCCCcCC-CCCCCcccccccccccccccccCccccccCc------------------c-ccCCCc
Q 007237 9 QQHLNMLKVMKLSHSENLIKTP-DFTEAPNLEELYLEGCTKLRKVHPSLLLHNK------------------L-IFVESL 68 (611)
Q Consensus 9 ~~~l~~L~~L~Ls~~~~l~~~~-~~~~~~~L~~L~L~~c~~l~~i~~s~~~l~~------------------L-~~l~~L 68 (611)
+..+++|++|++++|+.....| .+..+++|++|++++|.....+|.. .+.+ + ..+++|
T Consensus 219 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L 296 (768)
T 3rgz_A 219 LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTL 296 (768)
T ss_dssp CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTC
T ss_pred cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcC
Confidence 6778888888888886554444 4777777777777777433333321 1000 0 002445
Q ss_pred cEEEecCCcCcCcCCcccCCCCCCcEEEcCCCCcc-ccCcc-ccCCCCCcEEeccCCCCCCCCcccCCCCC-CCCEEEec
Q 007237 69 KILILSGCLKLRKFPHVVGSMECLQELLLDGTDIK-ELPLS-IEHLFGLVQLTLNDCKNLSSLPVAISSFQ-CLRNLKLS 145 (611)
Q Consensus 69 ~~L~Ls~~~~~~~lp~~l~~l~~L~~L~L~~~~i~-~lp~~-~~~l~~L~~L~L~~c~~l~~lp~~l~~l~-~L~~L~L~ 145 (611)
++|++++|.+.+.+|..++++++|++|++++|.+. .+|.. +..+++|++|++++|.....+|..+.+++ +|+.|+++
T Consensus 297 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls 376 (768)
T 3rgz_A 297 TGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLS 376 (768)
T ss_dssp SEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECC
T ss_pred CEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEcc
Confidence 55555555555555555555555555555555554 45543 55555555555555443334444444443 45555555
Q ss_pred CCCCCcccccccCC--CCCCCEEeecCccCC-CcCcccCCCCCCCEEeccCCcCCcccccCccCCCCCCEEEecCCCCCc
Q 007237 146 GCSKLKKFPQIVTT--MEDLSELNLDGTSIT-EVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLE 222 (611)
Q Consensus 146 ~~~~l~~~p~~~~~--l~~L~~L~L~~~~i~-~l~~~l~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~c~~l~ 222 (611)
+|...+..|..+.. +++|++|++++|.++ .+|..+..+++|+.|++++|...+.+|..+..+++|+.|++++|...+
T Consensus 377 ~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 456 (768)
T 3rgz_A 377 SNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEG 456 (768)
T ss_dssp SSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCS
T ss_pred CCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccC
Confidence 54443344444433 555666666666665 456666777777777777777666777777777777777777777666
Q ss_pred ccCcccCCCCCccEEeccCCCcc-cCCccccccCCCcEEEcCCCCCCCCCCcc-cccccccccCCccchhhccCC-CCCC
Q 007237 223 NVPDTLGQVESLEELDISETAVR-RPPSSVFLMKNLRTLSFSGCNGPPSSASW-HLHLPFNLMGKSSCLVALMLP-SLSG 299 (611)
Q Consensus 223 ~~p~~l~~l~~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~~c~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~-~l~~ 299 (611)
.+|..++.+++|+.|++++|.+. .+|..+..+++|++|++++|........+ .....+..+....+.....+| .+..
T Consensus 457 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~ 536 (768)
T 3rgz_A 457 EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD 536 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGG
T ss_pred cCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcC
Confidence 77777777777777777777776 45666777777777777777644222211 111222223333332222333 3677
Q ss_pred CCCCCEEeccCCCCCCCCCC------------------------------------------------------------
Q 007237 300 LRSLTKLDLSDCGLGEGAIP------------------------------------------------------------ 319 (611)
Q Consensus 300 l~~L~~L~Ls~~~l~~~~~~------------------------------------------------------------ 319 (611)
+++|+.|++++|.+. +.+|
T Consensus 537 l~~L~~L~Ls~N~l~-g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l 615 (768)
T 3rgz_A 537 CRSLIWLDLNTNLFN-GTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNI 615 (768)
T ss_dssp CTTCCEEECCSSEEE-SBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCT
T ss_pred CCCCCEEECCCCccC-CcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccccccccc
Confidence 788888888877653 2222
Q ss_pred ----------CCCCCCCCCCEEEcCCCCCC-cCCcccccCCCcCeeecccccccCcCCCC---CCCcceeeecCCCCccc
Q 007237 320 ----------SDIGNLHSLNELYLSKNNFV-TLPASINSLLNLKELEMEDCKRLQFLPQL---PPNIIFVKVNGCSSLVT 385 (611)
Q Consensus 320 ----------~~l~~l~~L~~L~L~~n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~lp~l---p~~L~~L~i~~C~sL~~ 385 (611)
..++.+++|+.|+|++|+++ .+|..++.+++|+.|+|++|.....+|.- .++|+.|+++++.--..
T Consensus 616 ~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ 695 (768)
T 3rgz_A 616 TSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGR 695 (768)
T ss_dssp TSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEC
T ss_pred ccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCc
Confidence 23445677888888888887 78888888888888888888765566642 35677788777654334
Q ss_pred cc
Q 007237 386 LL 387 (611)
Q Consensus 386 l~ 387 (611)
++
T Consensus 696 ip 697 (768)
T 3rgz_A 696 IP 697 (768)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=9.1e-33 Score=314.12 Aligned_cols=340 Identities=15% Similarity=0.187 Sum_probs=286.1
Q ss_pred ccccCCCcccEEEccCCCCCCc-----------------CC-CCC--CCcccccccccccccccccCccccccCccccCC
Q 007237 7 CFQQHLNMLKVMKLSHSENLIK-----------------TP-DFT--EAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVE 66 (611)
Q Consensus 7 ~~~~~l~~L~~L~Ls~~~~l~~-----------------~~-~~~--~~~~L~~L~L~~c~~l~~i~~s~~~l~~L~~l~ 66 (611)
.++..+++|++|+|++|+.... +| .++ .+++|+.|+|++|...+.+|..++. ++
T Consensus 442 ~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~------L~ 515 (876)
T 4ecn_A 442 KAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD------LP 515 (876)
T ss_dssp GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG------CS
T ss_pred HHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhC------CC
Confidence 4688899999999999986551 55 456 8999999999999777888876655 78
Q ss_pred CccEEEecCCc-CcC-cCCcccCCCC-------CCcEEEcCCCCccccCc--cccCCCCCcEEeccCCCCCCCCcccCCC
Q 007237 67 SLKILILSGCL-KLR-KFPHVVGSME-------CLQELLLDGTDIKELPL--SIEHLFGLVQLTLNDCKNLSSLPVAISS 135 (611)
Q Consensus 67 ~L~~L~Ls~~~-~~~-~lp~~l~~l~-------~L~~L~L~~~~i~~lp~--~~~~l~~L~~L~L~~c~~l~~lp~~l~~ 135 (611)
+|++|+|++|. +.+ .+|..+++++ +|++|++++|.+..+|. .++++++|++|++++|. +..+| .+++
T Consensus 516 ~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp-~~~~ 593 (876)
T 4ecn_A 516 ELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK-VRHLE-AFGT 593 (876)
T ss_dssp SCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSC-CCBCC-CCCT
T ss_pred CCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCC-cccch-hhcC
Confidence 99999999998 666 7887666555 99999999999999999 99999999999999976 45899 7999
Q ss_pred CCCCCEEEecCCCCCcccccccCCCCC-CCEEeecCccCCCcCcccCCCCC--CCEEeccCCcCCcccccC---cc--CC
Q 007237 136 FQCLRNLKLSGCSKLKKFPQIVTTMED-LSELNLDGTSITEVPSSIELLPG--LELLNLNDCKNFARVPSS---IN--GL 207 (611)
Q Consensus 136 l~~L~~L~L~~~~~l~~~p~~~~~l~~-L~~L~L~~~~i~~l~~~l~~l~~--L~~L~L~~~~~~~~lp~~---i~--~l 207 (611)
+++|+.|++++|... .+|..+..+++ |++|++++|.++.+|..+..++. |+.|++++|...+.+|.. +. .+
T Consensus 594 L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~ 672 (876)
T 4ecn_A 594 NVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKG 672 (876)
T ss_dssp TSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCC
T ss_pred CCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccC
Confidence 999999999998765 88988999999 99999999999999988877754 999999999887766532 22 34
Q ss_pred CCCCEEEecCCCCCcccCccc-CCCCCccEEeccCCCcccCCcccccc--------CCCcEEEcCCCCCCCCCCcccccc
Q 007237 208 KSLKTLNLSGCCKLENVPDTL-GQVESLEELDISETAVRRPPSSVFLM--------KNLRTLSFSGCNGPPSSASWHLHL 278 (611)
Q Consensus 208 ~~L~~L~l~~c~~l~~~p~~l-~~l~~L~~L~l~~~~~~~~~~~~~~l--------~~L~~L~l~~c~~~~~~~~~~~~~ 278 (611)
++|+.|++++|... .+|..+ ..+++|+.|++++|.+..+|..+... ++|+.|++++|...
T Consensus 673 ~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~---------- 741 (876)
T 4ecn_A 673 INASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT---------- 741 (876)
T ss_dssp CCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC----------
T ss_pred CCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc----------
Confidence 58999999998766 677654 48899999999999999888776553 39999999998732
Q ss_pred cccccCCccchhhccCCC-CC--CCCCCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCC------CCCC-cCCcccccC
Q 007237 279 PFNLMGKSSCLVALMLPS-LS--GLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSK------NNFV-TLPASINSL 348 (611)
Q Consensus 279 ~~~~~~~~~~~~~~~l~~-l~--~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~L~~------n~l~-~lp~~i~~l 348 (611)
.+|. +. .+++|+.|+|++|.+.. +|..+..+++|+.|+|++ |++. .+|..+..+
T Consensus 742 --------------~lp~~l~~~~l~~L~~L~Ls~N~L~~--lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L 805 (876)
T 4ecn_A 742 --------------SLSDDFRATTLPYLSNMDVSYNCFSS--FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTC 805 (876)
T ss_dssp --------------CCCGGGSTTTCTTCCEEECCSSCCSS--CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGC
T ss_pred --------------cchHHhhhccCCCcCEEEeCCCCCCc--cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcC
Confidence 1222 43 78999999999999964 899999999999999977 5555 789999999
Q ss_pred CCcCeeecccccccCcCCC-CCCCcceeeecCCCCc
Q 007237 349 LNLKELEMEDCKRLQFLPQ-LPPNIIFVKVNGCSSL 383 (611)
Q Consensus 349 ~~L~~L~L~~c~~L~~lp~-lp~~L~~L~i~~C~sL 383 (611)
++|+.|+|++|+. ..+|. ++++|+.|++++|+-.
T Consensus 806 ~~L~~L~Ls~N~L-~~Ip~~l~~~L~~LdLs~N~l~ 840 (876)
T 4ecn_A 806 PSLIQLQIGSNDI-RKVDEKLTPQLYILDIADNPNI 840 (876)
T ss_dssp SSCCEEECCSSCC-CBCCSCCCSSSCEEECCSCTTC
T ss_pred CCCCEEECCCCCC-CccCHhhcCCCCEEECCCCCCC
Confidence 9999999999985 88886 6789999999999744
No 5
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.4e-32 Score=312.65 Aligned_cols=348 Identities=16% Similarity=0.172 Sum_probs=252.3
Q ss_pred CCCCCcccccccccccccccc------------------cCccccccCccccCCCccEEEecCCcCcCcCCcccCCCCCC
Q 007237 31 DFTEAPNLEELYLEGCTKLRK------------------VHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECL 92 (611)
Q Consensus 31 ~~~~~~~L~~L~L~~c~~l~~------------------i~~s~~~l~~L~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L 92 (611)
.+..+++|+.|+|++|. ++. +|.+++ +..+++|++|+|++|.+.+.+|..++++++|
T Consensus 443 ~l~~L~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~g~iP~~l~----f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L 517 (876)
T 4ecn_A 443 AIQRLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYENEELS----WSNLKDLTDVELYNCPNMTQLPDFLYDLPEL 517 (876)
T ss_dssp GGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCC----GGGCTTCCEEEEESCTTCCSCCGGGGGCSSC
T ss_pred HHhcCCCCCEEECcCCc-CCCCcccccccccccccccccCChhhh----hccCCCCCEEECcCCCCCccChHHHhCCCCC
Confidence 36677788888888774 444 665543 0136778888888888888888888888888
Q ss_pred cEEEcCCCC-ccc--cCccccCCC-------CCcEEeccCCCCCCCCcc--cCCCCCCCCEEEecCCCCCcccccccCCC
Q 007237 93 QELLLDGTD-IKE--LPLSIEHLF-------GLVQLTLNDCKNLSSLPV--AISSFQCLRNLKLSGCSKLKKFPQIVTTM 160 (611)
Q Consensus 93 ~~L~L~~~~-i~~--lp~~~~~l~-------~L~~L~L~~c~~l~~lp~--~l~~l~~L~~L~L~~~~~l~~~p~~~~~l 160 (611)
++|++++|. ++. +|..++.++ +|++|++++|. +..+|. .++++++|+.|++++|... .+| .++.+
T Consensus 518 ~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L 594 (876)
T 4ecn_A 518 QSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTN 594 (876)
T ss_dssp CEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTT
T ss_pred CEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCC
Confidence 888888887 763 776666555 88888888765 347777 7777888888888887655 677 77778
Q ss_pred CCCCEEeecCccCCCcCcccCCCCC-CCEEeccCCcCCcccccCccCCCC--CCEEEecCCCCCcccCc---ccC--CCC
Q 007237 161 EDLSELNLDGTSITEVPSSIELLPG-LELLNLNDCKNFARVPSSINGLKS--LKTLNLSGCCKLENVPD---TLG--QVE 232 (611)
Q Consensus 161 ~~L~~L~L~~~~i~~l~~~l~~l~~-L~~L~L~~~~~~~~lp~~i~~l~~--L~~L~l~~c~~l~~~p~---~l~--~l~ 232 (611)
++|+.|++++|.++.+|..+..+++ |+.|++++|... .+|..+..++. |+.|++++|...+.+|. .++ .++
T Consensus 595 ~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~ 673 (876)
T 4ecn_A 595 VKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGI 673 (876)
T ss_dssp SEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCC
T ss_pred CcceEEECcCCccccchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCC
Confidence 8888888888888888877777777 888888887755 67776665543 88888888776655442 222 334
Q ss_pred CccEEeccCCCcccCCcccc-ccCCCcEEEcCCCCCCCCCCcccccccccccCCccchhhccCCCCCCCCCCCEEeccCC
Q 007237 233 SLEELDISETAVRRPPSSVF-LMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDC 311 (611)
Q Consensus 233 ~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~ 311 (611)
+|+.|++++|.+..+|..+. .+++|+.|++++|... ..... ......+.+.++++|+.|+|++|
T Consensus 674 ~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~--------------~~~~~~~~l~nl~~L~~L~Ls~N 738 (876)
T 4ecn_A 674 NASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPEN--------------SLKPKDGNYKNTYLLTTIDLRFN 738 (876)
T ss_dssp CEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTT--------------SSSCTTSCCTTGGGCCEEECCSS
T ss_pred CcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChH--------------HhccccccccccCCccEEECCCC
Confidence 78888888888888777665 6788888888887632 11000 00001112345569999999999
Q ss_pred CCCCCCCCCCCC--CCCCCCEEEcCCCCCCcCCcccccCCCcCeeeccc------ccccCcCCCC---CCCcceeeecCC
Q 007237 312 GLGEGAIPSDIG--NLHSLNELYLSKNNFVTLPASINSLLNLKELEMED------CKRLQFLPQL---PPNIIFVKVNGC 380 (611)
Q Consensus 312 ~l~~~~~~~~l~--~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~------c~~L~~lp~l---p~~L~~L~i~~C 380 (611)
++. .+|..+. .+++|+.|+|++|++..+|..+..+++|+.|+|++ |.....+|.. .++|+.|++++|
T Consensus 739 ~L~--~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N 816 (876)
T 4ecn_A 739 KLT--SLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN 816 (876)
T ss_dssp CCC--CCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS
T ss_pred CCc--cchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCC
Confidence 996 5888887 99999999999999999999999999999999987 4444555542 468999999998
Q ss_pred CCcccccCcccccccCCcccccccch
Q 007237 381 SSLVTLLGALKLCKSNGIVIECIDSL 406 (611)
Q Consensus 381 ~sL~~l~~~~~~~~l~~l~~~~c~~L 406 (611)
.- ..++.... ..++.|++++++-.
T Consensus 817 ~L-~~Ip~~l~-~~L~~LdLs~N~l~ 840 (876)
T 4ecn_A 817 DI-RKVDEKLT-PQLYILDIADNPNI 840 (876)
T ss_dssp CC-CBCCSCCC-SSSCEEECCSCTTC
T ss_pred CC-CccCHhhc-CCCCEEECCCCCCC
Confidence 65 77775432 46777888887643
No 6
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.1e-33 Score=313.41 Aligned_cols=343 Identities=13% Similarity=0.139 Sum_probs=278.6
Q ss_pred ccccCCCcccEEEccCCCCCCc-----------------CC-CCC--CCcccccccccccccccccCccccccCccccCC
Q 007237 7 CFQQHLNMLKVMKLSHSENLIK-----------------TP-DFT--EAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVE 66 (611)
Q Consensus 7 ~~~~~l~~L~~L~Ls~~~~l~~-----------------~~-~~~--~~~~L~~L~L~~c~~l~~i~~s~~~l~~L~~l~ 66 (611)
..+.++++|++|+|++|+.... +| .+. .+++|++|+|++|...+.+|.+++. ++
T Consensus 200 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~------l~ 273 (636)
T 4eco_A 200 KAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA------LP 273 (636)
T ss_dssp GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTT------CS
T ss_pred HHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhc------CC
Confidence 3577899999999999985552 55 577 8999999999999777788876655 78
Q ss_pred CccEEEecCCc-CcC-cCCcccCCC------CCCcEEEcCCCCccccCc--cccCCCCCcEEeccCCCCCCCCcccCCCC
Q 007237 67 SLKILILSGCL-KLR-KFPHVVGSM------ECLQELLLDGTDIKELPL--SIEHLFGLVQLTLNDCKNLSSLPVAISSF 136 (611)
Q Consensus 67 ~L~~L~Ls~~~-~~~-~lp~~l~~l------~~L~~L~L~~~~i~~lp~--~~~~l~~L~~L~L~~c~~l~~lp~~l~~l 136 (611)
+|++|++++|. +.+ .+|..++.+ ++|++|++++|.++.+|. .++++++|++|++++|...+.+| .+..+
T Consensus 274 ~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l 352 (636)
T 4eco_A 274 EMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSE 352 (636)
T ss_dssp SCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEE
T ss_pred CCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCC
Confidence 89999999998 776 789888876 999999999999999999 89999999999999977555888 78889
Q ss_pred CCCCEEEecCCCCCcccccccCCCCC-CCEEeecCccCCCcCcccCCCC--CCCEEeccCCcCCcccccCcc-------C
Q 007237 137 QCLRNLKLSGCSKLKKFPQIVTTMED-LSELNLDGTSITEVPSSIELLP--GLELLNLNDCKNFARVPSSIN-------G 206 (611)
Q Consensus 137 ~~L~~L~L~~~~~l~~~p~~~~~l~~-L~~L~L~~~~i~~l~~~l~~l~--~L~~L~L~~~~~~~~lp~~i~-------~ 206 (611)
++|+.|++++|... .+|..+..+++ |++|++++|.++.+|..+..++ +|+.|++++|...+.+|..+. .
T Consensus 353 ~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~ 431 (636)
T 4eco_A 353 IKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFK 431 (636)
T ss_dssp EEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCC
T ss_pred CCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhccccccccc
Confidence 99999999997644 88888999999 9999999999999998877655 899999999999888888887 7
Q ss_pred CCCCCEEEecCCCCCcccCcc-cCCCCCccEEeccCCCcccCCcccccc--------CCCcEEEcCCCCCCCCCCccc--
Q 007237 207 LKSLKTLNLSGCCKLENVPDT-LGQVESLEELDISETAVRRPPSSVFLM--------KNLRTLSFSGCNGPPSSASWH-- 275 (611)
Q Consensus 207 l~~L~~L~l~~c~~l~~~p~~-l~~l~~L~~L~l~~~~~~~~~~~~~~l--------~~L~~L~l~~c~~~~~~~~~~-- 275 (611)
+++|++|++++|... .+|.. +..+++|+.|++++|.+..+|...... ++|++|++++|..........
T Consensus 432 ~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~ 510 (636)
T 4eco_A 432 GINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRAT 510 (636)
T ss_dssp CCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTT
T ss_pred CCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhc
Confidence 889999999998766 56654 456899999999999999888765543 289999999987542222211
Q ss_pred ccccccccCCccchhhccCCCCCCCCCCCEEeccC------CCCCCCCCCCCCCCCCCCCEEEcCCCCCCcCCcccccCC
Q 007237 276 LHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSD------CGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLL 349 (611)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~------~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~ 349 (611)
....+..+....+......+.+..+++|+.|++++ |++. +.+|..+..+++|+.|+|++|++..+|..+. +
T Consensus 511 ~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~~~--~ 587 (636)
T 4eco_A 511 TLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTL-REWPEGITLCPSLTQLQIGSNDIRKVNEKIT--P 587 (636)
T ss_dssp TCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCC-CCCCTTGGGCSSCCEEECCSSCCCBCCSCCC--T
T ss_pred cCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCccc-ccChHHHhcCCCCCEEECCCCcCCccCHhHh--C
Confidence 22223333333333333233478899999999954 5554 6789999999999999999999999998766 8
Q ss_pred CcCeeecccccc
Q 007237 350 NLKELEMEDCKR 361 (611)
Q Consensus 350 ~L~~L~L~~c~~ 361 (611)
+|+.|++++|+.
T Consensus 588 ~L~~L~Ls~N~l 599 (636)
T 4eco_A 588 NISVLDIKDNPN 599 (636)
T ss_dssp TCCEEECCSCTT
T ss_pred cCCEEECcCCCC
Confidence 999999999973
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.4e-31 Score=296.00 Aligned_cols=180 Identities=23% Similarity=0.206 Sum_probs=85.3
Q ss_pred cCCCCCCCEEeccCCcCCcccccCccCCCCCCEEEecCCCCCcccCcccCCCCCccEEeccCCCcc-cCCc-cccccCCC
Q 007237 180 IELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVR-RPPS-SVFLMKNL 257 (611)
Q Consensus 180 l~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~c~~l~~~p~~l~~l~~L~~L~l~~~~~~-~~~~-~~~~l~~L 257 (611)
++.+++|+.|++++|... .+|..+..+++|++|++++|......|..++.+++|+.|++++|.+. .++. .+..+++|
T Consensus 274 ~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 352 (606)
T 3t6q_A 274 FHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENL 352 (606)
T ss_dssp TTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTC
T ss_pred hccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcC
Confidence 445556666666655433 55555566666666666665554444555555666666666665554 3333 24555666
Q ss_pred cEEEcCCCCCCCCC---CcccccccccccCCccch-hhccCCCCCCCCCCCEEeccCCCCCCCCCCCCCCCCCCCCEEEc
Q 007237 258 RTLSFSGCNGPPSS---ASWHLHLPFNLMGKSSCL-VALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYL 333 (611)
Q Consensus 258 ~~L~l~~c~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~L 333 (611)
++|++++|...... ........+..+....+. .......+..+++|+.|++++|.+.....+..+..+++|+.|++
T Consensus 353 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 432 (606)
T 3t6q_A 353 RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNL 432 (606)
T ss_dssp CEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEEC
T ss_pred CEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEEC
Confidence 66666655422110 000000011111111111 11111224455555555555555542222333555555555555
Q ss_pred CCCCCCc-CCcccccCCCcCeeeccccc
Q 007237 334 SKNNFVT-LPASINSLLNLKELEMEDCK 360 (611)
Q Consensus 334 ~~n~l~~-lp~~i~~l~~L~~L~L~~c~ 360 (611)
++|.+.. .|..+..+++|++|++++|+
T Consensus 433 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 460 (606)
T 3t6q_A 433 SHSLLDISSEQLFDGLPALQHLNLQGNH 460 (606)
T ss_dssp TTCCCBTTCTTTTTTCTTCCEEECTTCB
T ss_pred CCCccCCcCHHHHhCCCCCCEEECCCCC
Confidence 5555553 23345555555555555554
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.98 E-value=4.3e-31 Score=293.92 Aligned_cols=215 Identities=20% Similarity=0.189 Sum_probs=128.8
Q ss_pred CCCCCCEEeecCccCCCcCcccCCCCCCCEEeccCCcCCcccccCccCCCCCCEEEecCCCCCcccCcccCCCCCccEEe
Q 007237 159 TMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELD 238 (611)
Q Consensus 159 ~l~~L~~L~L~~~~i~~l~~~l~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~c~~l~~~p~~l~~l~~L~~L~ 238 (611)
.+++|+.|++.++.+..+| .+..+++|+.|++++|.. +.+|. + .+++|++|++++|.....+ .++.+++|+.|+
T Consensus 283 ~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l-~~lp~-~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ 356 (606)
T 3vq2_A 283 CLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQL-KQFPT-L-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLD 356 (606)
T ss_dssp GGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCC-SSCCC-C-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEE
T ss_pred cCCCCCEEEecCccchhhh-hccccccCCEEEcccccC-ccccc-C-CCCccceeeccCCcCccch--hhccCCCCCEEE
Confidence 3456666667777666666 677788889999988887 77774 4 7888888888887655544 455677777777
Q ss_pred ccCCCcccC---CccccccCCCcEEEcCCCCCCCCCCcccccccccccCCccchhhccC--CCCCCCCCCCEEeccCCCC
Q 007237 239 ISETAVRRP---PSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALML--PSLSGLRSLTKLDLSDCGL 313 (611)
Q Consensus 239 l~~~~~~~~---~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~l~~l~~L~~L~Ls~~~l 313 (611)
+++|.+... +..+..+++|++|++++|..............+..+....+...... ..+..+++|+.|++++|.+
T Consensus 357 ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l 436 (606)
T 3vq2_A 357 LSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNT 436 (606)
T ss_dssp CCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCC
T ss_pred CcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCC
Confidence 777776644 56666677777777777652211111111111222222222211122 2356666677777766666
Q ss_pred CCCCCCCCCCCCCCCCEEEcCCCCCCc--CCcccccCCCcCeeecccccccCcCCC---CCCCcceeeecCC
Q 007237 314 GEGAIPSDIGNLHSLNELYLSKNNFVT--LPASINSLLNLKELEMEDCKRLQFLPQ---LPPNIIFVKVNGC 380 (611)
Q Consensus 314 ~~~~~~~~l~~l~~L~~L~L~~n~l~~--lp~~i~~l~~L~~L~L~~c~~L~~lp~---lp~~L~~L~i~~C 380 (611)
. +..|..+..+++|+.|++++|.+.. +|..+..+++|++|++++|+.....|. -.++|+.|++++|
T Consensus 437 ~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 507 (606)
T 3vq2_A 437 K-IDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHN 507 (606)
T ss_dssp E-ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred C-ccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCC
Confidence 4 3455566666666666666666653 565666666666666666643332232 1245666666666
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.98 E-value=1.5e-30 Score=289.50 Aligned_cols=377 Identities=19% Similarity=0.182 Sum_probs=255.7
Q ss_pred CcccEEEccCCCCCCcCC-CCCCCcccccccccccccccccCccccccCccccCCCccEEEecCCcCcCcCCcccCCCCC
Q 007237 13 NMLKVMKLSHSENLIKTP-DFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMEC 91 (611)
Q Consensus 13 ~~L~~L~Ls~~~~l~~~~-~~~~~~~L~~L~L~~c~~l~~i~~s~~~l~~L~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~ 91 (611)
++|++|+|++|+.....+ .|.++++|++|++++| .++.+++.. +..+++|++|+|++|.+.+..|..++++++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~i~~~~-----~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 105 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRC-EIETIEDKA-----WHGLHHLSNLILTGNPIQSFSPGSFSGLTS 105 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTT-----TTTCTTCCEEECTTCCCCCCCTTSSTTCTT
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCC-cccccCHHH-----hhchhhcCEeECCCCcccccChhhcCCccc
Confidence 678888888886543333 5888888888888887 566554321 233778888888888877777888888888
Q ss_pred CcEEEcCCCCccccC-ccccCCCCCcEEeccCCCCCC-CCcccCCCCCCCCEEEecCCCCCcccccccCCCCCCC----E
Q 007237 92 LQELLLDGTDIKELP-LSIEHLFGLVQLTLNDCKNLS-SLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLS----E 165 (611)
Q Consensus 92 L~~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~c~~l~-~lp~~l~~l~~L~~L~L~~~~~l~~~p~~~~~l~~L~----~ 165 (611)
|++|++++|.+..++ ..++++++|++|++++|.... .+|..++++++|++|++++|......+..++.+.+|+ +
T Consensus 106 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~ 185 (606)
T 3vq2_A 106 LENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLS 185 (606)
T ss_dssp CCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCE
T ss_pred CCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccce
Confidence 888888888888776 678888888888888876443 5677788888888888888765554444333332222 3
Q ss_pred EeecCccCCCcCcc------------------------------------------------------------------
Q 007237 166 LNLDGTSITEVPSS------------------------------------------------------------------ 179 (611)
Q Consensus 166 L~L~~~~i~~l~~~------------------------------------------------------------------ 179 (611)
|++++|.++.++..
T Consensus 186 L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~ 265 (606)
T 3vq2_A 186 LDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDE 265 (606)
T ss_dssp EECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEE
T ss_pred eeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhh
Confidence 44444333322221
Q ss_pred ---------------cCCCCCCCEEeccCCcCCcccccCccCCCCCCEEEecCCCCCcccCcccCCCCCccEEeccCCCc
Q 007237 180 ---------------IELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAV 244 (611)
Q Consensus 180 ---------------l~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~c~~l~~~p~~l~~l~~L~~L~l~~~~~ 244 (611)
+..+++|+.|++++|.. ..+| .+..+++|++|++++|.. +.+| .+ .+++|+.|++++|..
T Consensus 266 l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-~~l~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~ 340 (606)
T 3vq2_A 266 FRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI-KYLE-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKG 340 (606)
T ss_dssp EEECCCTTCCGGGGSCGGGTTCSEEEEESCCC-CCCC-CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSS
T ss_pred eeccccccccccccccccCCCCCEEEecCccc-hhhh-hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcC
Confidence 33456677777777654 4556 788888999999999877 7788 44 889999999998854
Q ss_pred ccCCccccccCCCcEEEcCCCCCCCC---CCcccccccccccCCccchhhccCCCCCCCCCCCEEeccCCCCCCCCCC-C
Q 007237 245 RRPPSSVFLMKNLRTLSFSGCNGPPS---SASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIP-S 320 (611)
Q Consensus 245 ~~~~~~~~~l~~L~~L~l~~c~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~~-~ 320 (611)
.... .+..+++|++|++++|..... .........+..+....+......+.+..+++|+.|++++|.+.. ..+ .
T Consensus 341 ~~~~-~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~ 418 (606)
T 3vq2_A 341 SISF-KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKR-VTEFS 418 (606)
T ss_dssp CEEC-CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEES-TTTTT
T ss_pred ccch-hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCC-ccChh
Confidence 4222 456788999999998873211 011111112222222323222223558888999999999998863 334 5
Q ss_pred CCCCCCCCCEEEcCCCCCCc-CCcccccCCCcCeeecccccccCc-CCCC---CCCcceeeecCCCCccccc-C-ccccc
Q 007237 321 DIGNLHSLNELYLSKNNFVT-LPASINSLLNLKELEMEDCKRLQF-LPQL---PPNIIFVKVNGCSSLVTLL-G-ALKLC 393 (611)
Q Consensus 321 ~l~~l~~L~~L~L~~n~l~~-lp~~i~~l~~L~~L~L~~c~~L~~-lp~l---p~~L~~L~i~~C~sL~~l~-~-~~~~~ 393 (611)
.+..+++|+.|++++|.+.. .|..+..+++|++|++++|+.... +|.. .++|+.|++++|. ++.+. . .....
T Consensus 419 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~ 497 (606)
T 3vq2_A 419 AFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQ-LEQISWGVFDTLH 497 (606)
T ss_dssp TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTTTTCT
T ss_pred hhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCc-CCccChhhhcccc
Confidence 78889999999999999884 667788999999999999875442 4442 3688899998884 43332 2 22345
Q ss_pred ccCCcccccc
Q 007237 394 KSNGIVIECI 403 (611)
Q Consensus 394 ~l~~l~~~~c 403 (611)
+++.|++.++
T Consensus 498 ~L~~L~Ls~N 507 (606)
T 3vq2_A 498 RLQLLNMSHN 507 (606)
T ss_dssp TCCEEECCSS
T ss_pred cCCEEECCCC
Confidence 5666666665
No 10
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.97 E-value=1.3e-30 Score=290.14 Aligned_cols=266 Identities=20% Similarity=0.244 Sum_probs=181.6
Q ss_pred CCcEEEcCCCCccccCcc-ccCCCCCcEEeccCCCCCCCCcccCCCCCCCCEEEecCCCCCcccccccCCCCCCCEEeec
Q 007237 91 CLQELLLDGTDIKELPLS-IEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLD 169 (611)
Q Consensus 91 ~L~~L~L~~~~i~~lp~~-~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~~~~l~~L~~L~L~ 169 (611)
+|++|+++++.+..++.. ++.+++|++|++++|. ++.+|..+..+++|++|++++|......|..+..+++|++|+++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 333 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATH-LSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK 333 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSC-CSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECC
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCc-cCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECC
Confidence 456666666666666544 7788888888888864 66788878888888888888877666667778888888888888
Q ss_pred CccCC-CcCcc-cCCCCCCCEEeccCCcCCccc--ccCccCCCCCCEEEecCCCCCcccCcccCCCCCccEEeccCCCcc
Q 007237 170 GTSIT-EVPSS-IELLPGLELLNLNDCKNFARV--PSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVR 245 (611)
Q Consensus 170 ~~~i~-~l~~~-l~~l~~L~~L~L~~~~~~~~l--p~~i~~l~~L~~L~l~~c~~l~~~p~~l~~l~~L~~L~l~~~~~~ 245 (611)
+|.+. .++.. +..+++|++|++++|...+.. +..+..+++|++|++++|......|..++.+++|+.|++++|.+.
T Consensus 334 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 413 (606)
T 3t6q_A 334 GNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLK 413 (606)
T ss_dssp SCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEE
T ss_pred CCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCC
Confidence 88776 45543 778888888888888776554 667788888888888888776667777888888888888888877
Q ss_pred cC-C-ccccccCCCcEEEcCCCCCCCCCCcccccccccccCCccchhhccCCCCCCCCCCCEEeccCCCCCCCCCC--CC
Q 007237 246 RP-P-SSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIP--SD 321 (611)
Q Consensus 246 ~~-~-~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~~--~~ 321 (611)
.. + ..+..+++|++|++++|..... ....+..+++|++|++++|.+....++ ..
T Consensus 414 ~~~~~~~~~~l~~L~~L~l~~n~l~~~----------------------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 471 (606)
T 3t6q_A 414 VKDAQSPFQNLHLLKVLNLSHSLLDIS----------------------SEQLFDGLPALQHLNLQGNHFPKGNIQKTNS 471 (606)
T ss_dssp CCTTCCTTTTCTTCCEEECTTCCCBTT----------------------CTTTTTTCTTCCEEECTTCBCGGGEECSSCG
T ss_pred CcccchhhhCcccCCEEECCCCccCCc----------------------CHHHHhCCCCCCEEECCCCCCCccccccchh
Confidence 54 2 3367788888888888763211 112245566666666666666432222 34
Q ss_pred CCCCCCCCEEEcCCCCCCcC-CcccccCCCcCeeecccccccCcCCCC---CCCcceeeecCC
Q 007237 322 IGNLHSLNELYLSKNNFVTL-PASINSLLNLKELEMEDCKRLQFLPQL---PPNIIFVKVNGC 380 (611)
Q Consensus 322 l~~l~~L~~L~L~~n~l~~l-p~~i~~l~~L~~L~L~~c~~L~~lp~l---p~~L~~L~i~~C 380 (611)
+..+++|+.|++++|+++.+ |..+..+++|++|++++|+.....|+. .++| .|+++++
T Consensus 472 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N 533 (606)
T 3t6q_A 472 LQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASN 533 (606)
T ss_dssp GGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSS
T ss_pred hccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCC
Confidence 56666666666666666644 455666666666666666533322221 1334 5555555
No 11
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=4.3e-30 Score=265.45 Aligned_cols=305 Identities=20% Similarity=0.297 Sum_probs=218.8
Q ss_pred ccCCCcccEEEccCCCCCCcCCCCCCCcccccccccccccccccCccccccCccccCCCccEEEecCCcCcCcCCcccCC
Q 007237 9 QQHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGS 88 (611)
Q Consensus 9 ~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~L~~L~L~~c~~l~~i~~s~~~l~~L~~l~~L~~L~Ls~~~~~~~lp~~l~~ 88 (611)
...+++|+.|+++++. ...++.+..+++|++|++++| .++.++. +..+++|++|++++|.+.. + ..+..
T Consensus 40 ~~~l~~L~~L~l~~~~-i~~~~~~~~~~~L~~L~l~~n-~i~~~~~-------~~~l~~L~~L~L~~n~i~~-~-~~~~~ 108 (347)
T 4fmz_A 40 QEELESITKLVVAGEK-VASIQGIEYLTNLEYLNLNGN-QITDISP-------LSNLVKLTNLYIGTNKITD-I-SALQN 108 (347)
T ss_dssp HHHHTTCSEEECCSSC-CCCCTTGGGCTTCCEEECCSS-CCCCCGG-------GTTCTTCCEEECCSSCCCC-C-GGGTT
T ss_pred chhcccccEEEEeCCc-cccchhhhhcCCccEEEccCC-ccccchh-------hhcCCcCCEEEccCCcccC-c-hHHcC
Confidence 3467788888888874 455677888888888888887 5555543 3347788888888886554 3 35778
Q ss_pred CCCCcEEEcCCCCccccCccccCCCCCcEEeccCCCCCCCCcccCCCCCCCCEEEecCCCCCcccccccCCCCCCCEEee
Q 007237 89 MECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNL 168 (611)
Q Consensus 89 l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~~~~l~~L~~L~L 168 (611)
+++|++|+++++.+..++. +..+++|++|++++|.....++. +..+++|++|++++|..... +. +..+++|++|++
T Consensus 109 l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~-~~-~~~l~~L~~L~l 184 (347)
T 4fmz_A 109 LTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDV-TP-IANLTDLYSLSL 184 (347)
T ss_dssp CTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCC-GG-GGGCTTCSEEEC
T ss_pred CCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCc-hh-hccCCCCCEEEc
Confidence 8888888888888887776 77888888888888777766665 77788888888888754433 32 677788888888
Q ss_pred cCccCCCcCcccCCCCCCCEEeccCCcCCcccccCccCCCCCCEEEecCCCCCcccCcccCCCCCccEEeccCCCcccCC
Q 007237 169 DGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPP 248 (611)
Q Consensus 169 ~~~~i~~l~~~l~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~c~~l~~~p~~l~~l~~L~~L~l~~~~~~~~~ 248 (611)
++|.+..++. +..+++|+.|++++|......+ +..+++|++|++++|..... +. +..+++|+.|++++|.+..+
T Consensus 185 ~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~- 258 (347)
T 4fmz_A 185 NYNQIEDISP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDL-SP-LANLSQLTWLEIGTNQISDI- 258 (347)
T ss_dssp TTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCC-
T ss_pred cCCccccccc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCC-cc-hhcCCCCCEEECCCCccCCC-
Confidence 8888877766 6777888888888876554433 66778888888888755433 33 67778888888888877765
Q ss_pred ccccccCCCcEEEcCCCCCCCCCCcccccccccccCCccchhhccCCCCCCCCCCCEEeccCCCCCCCCCCCCCCCCCCC
Q 007237 249 SSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSL 328 (611)
Q Consensus 249 ~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~L 328 (611)
..+..+++|++|++++|.... ++.+..+++|+.|++++|.+. +..+..+..+++|
T Consensus 259 ~~~~~l~~L~~L~l~~n~l~~------------------------~~~~~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L 313 (347)
T 4fmz_A 259 NAVKDLTKLKMLNVGSNQISD------------------------ISVLNNLSQLNSLFLNNNQLG-NEDMEVIGGLTNL 313 (347)
T ss_dssp GGGTTCTTCCEEECCSSCCCC------------------------CGGGGGCTTCSEEECCSSCCC-GGGHHHHHTCTTC
T ss_pred hhHhcCCCcCEEEccCCccCC------------------------ChhhcCCCCCCEEECcCCcCC-CcChhHhhccccC
Confidence 346677778888887775211 123556677888888887774 3445566777778
Q ss_pred CEEEcCCCCCCcCCcccccCCCcCeeeccccc
Q 007237 329 NELYLSKNNFVTLPASINSLLNLKELEMEDCK 360 (611)
Q Consensus 329 ~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~ 360 (611)
+.|++++|+++.++. +..+++|++|++++|+
T Consensus 314 ~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 314 TTLFLSQNHITDIRP-LASLSKMDSADFANQV 344 (347)
T ss_dssp SEEECCSSSCCCCGG-GGGCTTCSEESSSCC-
T ss_pred CEEEccCCccccccC-hhhhhccceeehhhhc
Confidence 888888887777665 7777777777777775
No 12
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=2.5e-30 Score=285.43 Aligned_cols=377 Identities=23% Similarity=0.240 Sum_probs=217.2
Q ss_pred cccEEEccCCCCCCcCC-CCCCCcccccccccccccccccCccccccCccccCCCccEEEecCCcCcCcCCcccCCCCCC
Q 007237 14 MLKVMKLSHSENLIKTP-DFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECL 92 (611)
Q Consensus 14 ~L~~L~Ls~~~~l~~~~-~~~~~~~L~~L~L~~c~~l~~i~~s~~~l~~L~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L 92 (611)
+++.|+|++|+.....+ .|.++++|++|+|++| .++.+++.. +..+++|++|++++|.+....|..++.+++|
T Consensus 29 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~-----~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 102 (570)
T 2z63_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGA-----YQSLSHLSTLILTGNPIQSLALGAFSGLSSL 102 (570)
T ss_dssp SCCEEECCSCCCCEECTTTTTTCSSCCEEECTTC-CCCEECTTT-----TTTCTTCCEEECTTCCCCEECTTTTTTCTTC
T ss_pred cccEEEccCCccCccChhHhhCCCCceEEECCCC-cCCccCccc-----ccCchhCCEEeCcCCcCCccCHhhhcCcccc
Confidence 56666666664322222 4666666666666665 344444321 1225556666666665555455555566666
Q ss_pred cEEEcCCCCccccCc-cccCCCCCcEEeccCCCCCC-CCcccCCCCCCCCEEEecCCCCCcccc----------------
Q 007237 93 QELLLDGTDIKELPL-SIEHLFGLVQLTLNDCKNLS-SLPVAISSFQCLRNLKLSGCSKLKKFP---------------- 154 (611)
Q Consensus 93 ~~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~c~~l~-~lp~~l~~l~~L~~L~L~~~~~l~~~p---------------- 154 (611)
++|+++++.++.++. .++.+++|++|++++|.... .+|..++++++|++|++++|......+
T Consensus 103 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L 182 (570)
T 2z63_A 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 182 (570)
T ss_dssp CEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEE
T ss_pred ccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhc
Confidence 666666665555543 45555566666665544322 245555555555555555543322222
Q ss_pred --------------------------------------------------------------------------------
Q 007237 155 -------------------------------------------------------------------------------- 154 (611)
Q Consensus 155 -------------------------------------------------------------------------------- 154 (611)
T Consensus 183 ~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l 262 (570)
T 2z63_A 183 DLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262 (570)
T ss_dssp ECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEE
T ss_pred ccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhh
Confidence
Q ss_pred -------------cccCCCCCCCEEeecCccCCCcCcccCCCCCCCEEeccCCcCCcccccCccCCCCCCEEEecCCCCC
Q 007237 155 -------------QIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKL 221 (611)
Q Consensus 155 -------------~~~~~l~~L~~L~L~~~~i~~l~~~l~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~c~~l 221 (611)
..+..+++|++|+++++.++++|..+..+ +|+.|++++|... .+|. ..+++|+.|++++|...
T Consensus 263 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~ 338 (570)
T 2z63_A 263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGG 338 (570)
T ss_dssp EEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSC
T ss_pred hhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCccc
Confidence 22333455666666666666666666555 6666666666544 3433 24556666666665544
Q ss_pred cccCcccCCCCCccEEeccCCCcccC---CccccccCCCcEEEcCCCCCCCCCCcccccccccccCCccchhhccCC--C
Q 007237 222 ENVPDTLGQVESLEELDISETAVRRP---PSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLP--S 296 (611)
Q Consensus 222 ~~~p~~l~~l~~L~~L~l~~~~~~~~---~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~ 296 (611)
...+. ..+++|+.|++++|.+... +..+..+++|++|++++|..............+..+....+......+ .
T Consensus 339 ~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 416 (570)
T 2z63_A 339 NAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSV 416 (570)
T ss_dssp CBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCT
T ss_pred ccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhh
Confidence 44333 5667777777777777644 455666777777777777522111111111112222222222222222 3
Q ss_pred CCCCCCCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCC--cCCcccccCCCcCeeecccccccCcCCC---CCCC
Q 007237 297 LSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFV--TLPASINSLLNLKELEMEDCKRLQFLPQ---LPPN 371 (611)
Q Consensus 297 l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~--~lp~~i~~l~~L~~L~L~~c~~L~~lp~---lp~~ 371 (611)
+..+++|+.|++++|.+. +..|..+..+++|+.|++++|.+. .+|..+..+++|++|++++|+.....|. -.++
T Consensus 417 ~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 495 (570)
T 2z63_A 417 FLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 495 (570)
T ss_dssp TTTCTTCCEEECTTSCCE-ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred hhcCCCCCEEeCcCCccc-ccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccC
Confidence 778888999999998875 456777888899999999999886 5888888899999999998864433343 2367
Q ss_pred cceeeecCCCCcccccCc--ccccccCCccccccc
Q 007237 372 IIFVKVNGCSSLVTLLGA--LKLCKSNGIVIECID 404 (611)
Q Consensus 372 L~~L~i~~C~sL~~l~~~--~~~~~l~~l~~~~c~ 404 (611)
|++|++++| .++.++.. ....+++.+++.+++
T Consensus 496 L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 496 LQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp CCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCCc
Confidence 888888887 45554321 233445556555543
No 13
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.97 E-value=2.6e-30 Score=277.33 Aligned_cols=340 Identities=19% Similarity=0.152 Sum_probs=251.1
Q ss_pred CcccEEEccCCCCCCcCC-CCCCCcccccccccccccccccCccccccCccccCCCccEEEecCCcCcCcCCcccCCCCC
Q 007237 13 NMLKVMKLSHSENLIKTP-DFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMEC 91 (611)
Q Consensus 13 ~~L~~L~Ls~~~~l~~~~-~~~~~~~L~~L~L~~c~~l~~i~~s~~~l~~L~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~ 91 (611)
++|++|+|++|......| .|+.+++|++|++++|.....+++. .+..+++|++|+|++|.+.+..|..++.+++
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~-----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 104 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNN-----TFRGLSSLIILKLDYNQFLQLETGAFNGLAN 104 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTT-----TTTTCTTCCEEECTTCTTCEECTTTTTTCTT
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcc-----cccccccCCEEeCCCCccCccChhhccCccc
Confidence 678999999987554434 5889999999999998544455432 2334788999999999988888899999999
Q ss_pred CcEEEcCCCCccc-cCcc--ccCCCCCcEEeccCCCCCCCCccc-CCCCCCCCEEEecCCCCCcccccccCCC--CCCCE
Q 007237 92 LQELLLDGTDIKE-LPLS--IEHLFGLVQLTLNDCKNLSSLPVA-ISSFQCLRNLKLSGCSKLKKFPQIVTTM--EDLSE 165 (611)
Q Consensus 92 L~~L~L~~~~i~~-lp~~--~~~l~~L~~L~L~~c~~l~~lp~~-l~~l~~L~~L~L~~~~~l~~~p~~~~~l--~~L~~ 165 (611)
|++|++++|.++. +|.. +..+++|++|++++|......|.. +.++++|++|++++|......+..+..+ .+|+.
T Consensus 105 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~ 184 (455)
T 3v47_A 105 LEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTL 184 (455)
T ss_dssp CCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEE
T ss_pred CCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccc
Confidence 9999999999885 4444 888999999999997755555665 7789999999999988777777777665 67889
Q ss_pred EeecCccCCCcCcc---------cCCCCCCCEEeccCCcCCcccccCccCC---CCCCEEEecCCCCCcccC--------
Q 007237 166 LNLDGTSITEVPSS---------IELLPGLELLNLNDCKNFARVPSSINGL---KSLKTLNLSGCCKLENVP-------- 225 (611)
Q Consensus 166 L~L~~~~i~~l~~~---------l~~l~~L~~L~L~~~~~~~~lp~~i~~l---~~L~~L~l~~c~~l~~~p-------- 225 (611)
|+++++.+..++.. +..+++|+.|++++|...+..|..+... ++|+.|++++|.......
T Consensus 185 L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 264 (455)
T 3v47_A 185 LRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDP 264 (455)
T ss_dssp EECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCC
T ss_pred cccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccC
Confidence 99999988876543 3456889999999998877777655433 788888888775433211
Q ss_pred --cccC--CCCCccEEeccCCCccc-CCccccccCCCcEEEcCCCCCCCCCCcccccccccccCCccchhhccCCCCCCC
Q 007237 226 --DTLG--QVESLEELDISETAVRR-PPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGL 300 (611)
Q Consensus 226 --~~l~--~l~~L~~L~l~~~~~~~-~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l 300 (611)
..+. ..++|+.|++++|.+.. .|..+..+++|++|++++|.... .....+.++
T Consensus 265 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~----------------------~~~~~~~~l 322 (455)
T 3v47_A 265 DNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINK----------------------IDDNAFWGL 322 (455)
T ss_dssp CTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCE----------------------ECTTTTTTC
T ss_pred cccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccc----------------------cChhHhcCc
Confidence 1111 23678888888888875 45667778888888888876221 112236778
Q ss_pred CCCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCCcC-CcccccCCCcCeeecccccccCcCCC----CCCCccee
Q 007237 301 RSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTL-PASINSLLNLKELEMEDCKRLQFLPQ----LPPNIIFV 375 (611)
Q Consensus 301 ~~L~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~l-p~~i~~l~~L~~L~L~~c~~L~~lp~----lp~~L~~L 375 (611)
++|+.|++++|.+. +..+..+..+++|+.|+|++|+++.+ |..+..+++|++|++++|+ ++.+|. -.++|++|
T Consensus 323 ~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L 400 (455)
T 3v47_A 323 THLLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ-LKSVPDGIFDRLTSLQKI 400 (455)
T ss_dssp TTCCEEECCSSCCC-EECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEE
T ss_pred ccCCEEECCCCccC-CcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCc-cccCCHhHhccCCcccEE
Confidence 88888888888884 44466778888888888888888865 6678888888888888875 555543 12456666
Q ss_pred eecCCC
Q 007237 376 KVNGCS 381 (611)
Q Consensus 376 ~i~~C~ 381 (611)
++++++
T Consensus 401 ~l~~N~ 406 (455)
T 3v47_A 401 WLHTNP 406 (455)
T ss_dssp ECCSSC
T ss_pred EccCCC
Confidence 665543
No 14
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=3.7e-30 Score=284.09 Aligned_cols=378 Identities=20% Similarity=0.199 Sum_probs=261.9
Q ss_pred ccEEEccCCCCCCcCCCCCCCcccccccccccccccccCccccccCccccCCCccEEEecCCcCcCcCCcccCCCCCCcE
Q 007237 15 LKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQE 94 (611)
Q Consensus 15 L~~L~Ls~~~~l~~~~~~~~~~~L~~L~L~~c~~l~~i~~s~~~l~~L~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~ 94 (611)
.+.++.++. .+..+|. .-.++++.|+++++ .++.+++. .+..+++|++|++++|.+.+..|..++++++|++
T Consensus 9 ~~~~~c~~~-~l~~ip~-~l~~~l~~L~Ls~n-~l~~~~~~-----~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~ 80 (570)
T 2z63_A 9 NITYQCMEL-NFYKIPD-NLPFSTKNLDLSFN-PLRHLGSY-----SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLST 80 (570)
T ss_dssp TTEEECCSS-CCSSCCS-SSCSSCCEEECCSC-CCCEECTT-----TTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred CcEEEeCCC-CccccCC-CccccccEEEccCC-ccCccChh-----HhhCCCCceEEECCCCcCCccCcccccCchhCCE
Confidence 455666653 5666775 22468999999997 56666542 2344899999999999888777888999999999
Q ss_pred EEcCCCCccccC-ccccCCCCCcEEeccCCCCCCCCcc-cCCCCCCCCEEEecCCCCCc-ccccccCCCCCCCEEeecCc
Q 007237 95 LLLDGTDIKELP-LSIEHLFGLVQLTLNDCKNLSSLPV-AISSFQCLRNLKLSGCSKLK-KFPQIVTTMEDLSELNLDGT 171 (611)
Q Consensus 95 L~L~~~~i~~lp-~~~~~l~~L~~L~L~~c~~l~~lp~-~l~~l~~L~~L~L~~~~~l~-~~p~~~~~l~~L~~L~L~~~ 171 (611)
|++++|.++.++ ..++.+++|++|++++|. +..++. .++++++|++|++++|.... .+|..++++++|++|++++|
T Consensus 81 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n 159 (570)
T 2z63_A 81 LILTGNPIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159 (570)
T ss_dssp EECTTCCCCEECTTTTTTCTTCCEEECTTSC-CCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTS
T ss_pred EeCcCCcCCccCHhhhcCccccccccccccc-cccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCC
Confidence 999999999876 689999999999999975 666654 58899999999999987665 57999999999999999999
Q ss_pred cCCCcCc-ccCCCCCC----CEEeccCCcCCc------------------------------------------------
Q 007237 172 SITEVPS-SIELLPGL----ELLNLNDCKNFA------------------------------------------------ 198 (611)
Q Consensus 172 ~i~~l~~-~l~~l~~L----~~L~L~~~~~~~------------------------------------------------ 198 (611)
.++.++. .++.+++| +.|++++|...+
T Consensus 160 ~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~ 239 (570)
T 2z63_A 160 KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN 239 (570)
T ss_dssp CCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCC
T ss_pred ccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccC
Confidence 8886543 34444444 455555443222
Q ss_pred ---------------------------------ccccCccCCCCCCEEEecCCCCCcccCcccCCCCCccEEeccCCCcc
Q 007237 199 ---------------------------------RVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVR 245 (611)
Q Consensus 199 ---------------------------------~lp~~i~~l~~L~~L~l~~c~~l~~~p~~l~~l~~L~~L~l~~~~~~ 245 (611)
..|..+..+++|++|++++|.. ..+|..+..+ +|+.|++++|.+.
T Consensus 240 ~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l-~~l~~~~~~~-~L~~L~l~~n~~~ 317 (570)
T 2z63_A 240 EGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI-ERVKDFSYNF-GWQHLELVNCKFG 317 (570)
T ss_dssp CSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEE-CSCCBCCSCC-CCSEEEEESCBCS
T ss_pred chhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccc-hhhhhhhccC-CccEEeeccCccc
Confidence 1233445567777777777644 3566666666 7777777777666
Q ss_pred cCCccc--------------------cccCCCcEEEcCCCCCCCCC---CcccccccccccCCccchhhccCCCCCCCCC
Q 007237 246 RPPSSV--------------------FLMKNLRTLSFSGCNGPPSS---ASWHLHLPFNLMGKSSCLVALMLPSLSGLRS 302 (611)
Q Consensus 246 ~~~~~~--------------------~~l~~L~~L~l~~c~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~ 302 (611)
.+|... ..+++|++|++++|...... ........+..+....+......+.+..+++
T Consensus 318 ~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~ 397 (570)
T 2z63_A 318 QFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQ 397 (570)
T ss_dssp SCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTT
T ss_pred ccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCC
Confidence 555421 45677777777777632110 0000111222222222222222233778999
Q ss_pred CCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCCc-CCcccccCCCcCeeeccccccc-CcCCC---CCCCcceeee
Q 007237 303 LTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVT-LPASINSLLNLKELEMEDCKRL-QFLPQ---LPPNIIFVKV 377 (611)
Q Consensus 303 L~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~-lp~~i~~l~~L~~L~L~~c~~L-~~lp~---lp~~L~~L~i 377 (611)
|++|++++|.+.....+..+..+++|+.|++++|.+.. .|..+..+++|++|++++|+.. ..+|. -.++|+.|++
T Consensus 398 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l 477 (570)
T 2z63_A 398 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 477 (570)
T ss_dssp CCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEEC
T ss_pred CCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEEC
Confidence 99999999998643333578999999999999999984 6677899999999999999854 24554 3478999999
Q ss_pred cCCCCcccccCc-ccccccCCcccccc
Q 007237 378 NGCSSLVTLLGA-LKLCKSNGIVIECI 403 (611)
Q Consensus 378 ~~C~sL~~l~~~-~~~~~l~~l~~~~c 403 (611)
++|.--...+.. ....+++.|++.+|
T Consensus 478 ~~n~l~~~~~~~~~~l~~L~~L~l~~n 504 (570)
T 2z63_A 478 SQCQLEQLSPTAFNSLSSLQVLNMASN 504 (570)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCCccccCChhhhhcccCCCEEeCCCC
Confidence 988533222321 23345566666655
No 15
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=1.6e-29 Score=275.82 Aligned_cols=124 Identities=15% Similarity=0.084 Sum_probs=82.0
Q ss_pred CcccEEEccCCCCCCcCC-CCCCCcccccccccccccccccC-ccccccCccccCCCccEEEecCCcCcCcCCcccCCCC
Q 007237 13 NMLKVMKLSHSENLIKTP-DFTEAPNLEELYLEGCTKLRKVH-PSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSME 90 (611)
Q Consensus 13 ~~L~~L~Ls~~~~l~~~~-~~~~~~~L~~L~L~~c~~l~~i~-~s~~~l~~L~~l~~L~~L~Ls~~~~~~~lp~~l~~l~ 90 (611)
++|++|+|++|+.....| .|..+++|++|+|++| .++.++ ..+ ..+++|++|+|++|.+. .+|.. .++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~------~~l~~L~~L~Ls~N~l~-~lp~~--~l~ 90 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHN-RIQYLDISVF------KFNQELEYLDLSHNKLV-KISCH--PTV 90 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSS-CCCEEEGGGG------TTCTTCCEEECCSSCCC-EEECC--CCC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCC-ccCCcChHHh------hcccCCCEEecCCCcee-ecCcc--ccC
Confidence 677778887775433332 4777777888888776 454443 232 23677777888777665 45555 677
Q ss_pred CCcEEEcCCCCccc--cCccccCCCCCcEEeccCCCCCCCCcccCCCCCCC--CEEEecCCCC
Q 007237 91 CLQELLLDGTDIKE--LPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCL--RNLKLSGCSK 149 (611)
Q Consensus 91 ~L~~L~L~~~~i~~--lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L--~~L~L~~~~~ 149 (611)
+|++|++++|.++. +|..++.+++|++|++++|... . ..+..+++| +.|++++|..
T Consensus 91 ~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~-~--~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 91 NLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLE-K--SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp CCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCC-G--GGGGGGTTSCEEEEEEEECTT
T ss_pred CccEEeccCCccccccchhhhccCCcceEEEecCcccc-h--hhccccccceeeEEEeecccc
Confidence 78888888877775 4577777778888887775532 2 234556666 7788777765
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=5.3e-30 Score=281.62 Aligned_cols=340 Identities=18% Similarity=0.233 Sum_probs=232.3
Q ss_pred CcccEEEccCCCCCCcCC-CCCCCcccccccccccccccccCccccccCccccCCCccEEEecCCcCcCcCCcccCCCCC
Q 007237 13 NMLKVMKLSHSENLIKTP-DFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMEC 91 (611)
Q Consensus 13 ~~L~~L~Ls~~~~l~~~~-~~~~~~~L~~L~L~~c~~l~~i~~s~~~l~~L~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~ 91 (611)
++|++|+|++|+.....| .|..+++|++|++++| .++.+++. .+..+++|++|++++|.+.+..|..++.+++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~-----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 99 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS-RINTIEGD-----AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSS 99 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTS-CCCEECTT-----TTTTCTTCCEEECTTSCCCSCCHHHHTTCTT
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCC-CcCccChh-----hccccccCCEEECCCCccCccCHHHhccCCC
Confidence 689999999997544433 5899999999999998 56666542 2234789999999999988877778999999
Q ss_pred CcEEEcCCCCccc--cCccccCCCCCcEEeccCCCCCCCCc-ccCCCCCCCCEEEecCCCCCcccccccCCCCCCCEEee
Q 007237 92 LQELLLDGTDIKE--LPLSIEHLFGLVQLTLNDCKNLSSLP-VAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNL 168 (611)
Q Consensus 92 L~~L~L~~~~i~~--lp~~~~~l~~L~~L~L~~c~~l~~lp-~~l~~l~~L~~L~L~~~~~l~~~p~~~~~l~~L~~L~L 168 (611)
|++|++++|.++. +|..++++++|++|++++|..++.+| ..+.++++|++|++++|...+..|..++.+++|++|++
T Consensus 100 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 179 (549)
T 2z81_A 100 LKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTL 179 (549)
T ss_dssp CCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEE
T ss_pred CcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEec
Confidence 9999999999985 46789999999999999988777776 46888999999999999888778888888888888888
Q ss_pred cCccCCCcCccc-CCCCCCCEEeccCCcCCccc--c-----------------------------cCccCCCCCCEEEec
Q 007237 169 DGTSITEVPSSI-ELLPGLELLNLNDCKNFARV--P-----------------------------SSINGLKSLKTLNLS 216 (611)
Q Consensus 169 ~~~~i~~l~~~l-~~l~~L~~L~L~~~~~~~~l--p-----------------------------~~i~~l~~L~~L~l~ 216 (611)
+++.+..+|..+ ..+++|++|++++|...+.. | ..+..+++|+.++++
T Consensus 180 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~ 259 (549)
T 2z81_A 180 HLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFD 259 (549)
T ss_dssp ECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEE
T ss_pred ccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccc
Confidence 777776665543 45677777777776654421 1 111223344444444
Q ss_pred CCCCCc--ccC----cc-----------------------------cCCCCCccEEeccCCCcccCCccc-cccCCCcEE
Q 007237 217 GCCKLE--NVP----DT-----------------------------LGQVESLEELDISETAVRRPPSSV-FLMKNLRTL 260 (611)
Q Consensus 217 ~c~~l~--~~p----~~-----------------------------l~~l~~L~~L~l~~~~~~~~~~~~-~~l~~L~~L 260 (611)
+|...+ .++ .. ....++|+.|++++|.+..+|..+ ..+++|++|
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L 339 (549)
T 2z81_A 260 DCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFL 339 (549)
T ss_dssp SCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEE
T ss_pred cccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEE
Confidence 443211 000 00 111245667777777777777666 357778888
Q ss_pred EcCCCCCCCCCCcccccccccccCCccchhhccCCCCCCCCCCCEEeccCCCCCCCCCC---CCCCCCCCCCEEEcCCCC
Q 007237 261 SFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIP---SDIGNLHSLNELYLSKNN 337 (611)
Q Consensus 261 ~l~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~~---~~l~~l~~L~~L~L~~n~ 337 (611)
++++|...... ......++.+++|+.|++++|.+.. ++ ..+..+++|+.|++++|+
T Consensus 340 ~Ls~N~l~~~~-------------------~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~~~l~~L~~L~Ls~N~ 398 (549)
T 2z81_A 340 DLSENLMVEEY-------------------LKNSACKGAWPSLQTLVLSQNHLRS--MQKTGEILLTLKNLTSLDISRNT 398 (549)
T ss_dssp ECCSSCCCHHH-------------------HHHHTCTTSSTTCCEEECTTSCCCC--HHHHHHHGGGCTTCCEEECTTCC
T ss_pred EccCCcccccc-------------------ccchhhhhccccCcEEEccCCcccc--cccchhhhhcCCCCCEEECCCCC
Confidence 87777632100 0001124556677777777776642 22 235666777777777777
Q ss_pred CCcCCcccccCCCcCeeecccccccCcCCC-CCCCcceeeecCC
Q 007237 338 FVTLPASINSLLNLKELEMEDCKRLQFLPQ-LPPNIIFVKVNGC 380 (611)
Q Consensus 338 l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~-lp~~L~~L~i~~C 380 (611)
++.+|..+..+++|++|++++|. ++.+|. +|++|+.|++++|
T Consensus 399 l~~lp~~~~~~~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~Ls~N 441 (549)
T 2z81_A 399 FHPMPDSCQWPEKMRFLNLSSTG-IRVVKTCIPQTLEVLDVSNN 441 (549)
T ss_dssp CCCCCSCCCCCTTCCEEECTTSC-CSCCCTTSCTTCSEEECCSS
T ss_pred CccCChhhcccccccEEECCCCC-cccccchhcCCceEEECCCC
Confidence 77777767777777777777765 445543 4566777777665
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=8e-30 Score=278.29 Aligned_cols=338 Identities=18% Similarity=0.119 Sum_probs=250.9
Q ss_pred CcccccCCCcccEEEccCCCCCCcCC-CCCCCcccccccccccccccccCccccccCccccCCCccEEEecCCcCcC-cC
Q 007237 5 PFCFQQHLNMLKVMKLSHSENLIKTP-DFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLR-KF 82 (611)
Q Consensus 5 ~~~~~~~l~~L~~L~Ls~~~~l~~~~-~~~~~~~L~~L~L~~c~~l~~i~~s~~~l~~L~~l~~L~~L~Ls~~~~~~-~l 82 (611)
+...+..+++|++|+|++|+.....| .|..+++|++|+|++| .++.+|.. .+++|++|++++|.+.+ .+
T Consensus 37 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~--------~l~~L~~L~L~~N~l~~~~~ 107 (520)
T 2z7x_B 37 WTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN-KLVKISCH--------PTVNLKHLDLSFNAFDALPI 107 (520)
T ss_dssp CHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS-CCCEEECC--------CCCCCSEEECCSSCCSSCCC
T ss_pred ChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC-ceeecCcc--------ccCCccEEeccCCccccccc
Confidence 34567889999999999997554444 6899999999999998 67777764 37899999999999887 68
Q ss_pred CcccCCCCCCcEEEcCCCCccccCccccCCCCC--cEEeccCCCC--CCCCcccCCC-----------------------
Q 007237 83 PHVVGSMECLQELLLDGTDIKELPLSIEHLFGL--VQLTLNDCKN--LSSLPVAISS----------------------- 135 (611)
Q Consensus 83 p~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L--~~L~L~~c~~--l~~lp~~l~~----------------------- 135 (611)
|..++++++|++|++++|.+.. ..+..+++| ++|++++|.. ....|..+..
T Consensus 108 p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~ 185 (520)
T 2z7x_B 108 CKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVS 185 (520)
T ss_dssp CGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCC
T ss_pred hhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhh
Confidence 8999999999999999999886 457778888 9999998765 3444444433
Q ss_pred ---CCCCCEEEecCCC-------CCcccccccCC---------------------------CCCCCEEeecCccCC-CcC
Q 007237 136 ---FQCLRNLKLSGCS-------KLKKFPQIVTT---------------------------MEDLSELNLDGTSIT-EVP 177 (611)
Q Consensus 136 ---l~~L~~L~L~~~~-------~l~~~p~~~~~---------------------------l~~L~~L~L~~~~i~-~l~ 177 (611)
+++|+.|++++|. ..+.+| .++. .++|++|++++|.++ .+|
T Consensus 186 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p 264 (520)
T 2z7x_B 186 VKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLD 264 (520)
T ss_dssp CTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCC
T ss_pred hhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccc
Confidence 5556666666543 001111 1111 235666666666666 566
Q ss_pred ccc-----CCCCCCCEEeccCCcCCcccc-------------------------cC-ccCCCCCCEEEecCCCCCcccCc
Q 007237 178 SSI-----ELLPGLELLNLNDCKNFARVP-------------------------SS-INGLKSLKTLNLSGCCKLENVPD 226 (611)
Q Consensus 178 ~~l-----~~l~~L~~L~L~~~~~~~~lp-------------------------~~-i~~l~~L~~L~l~~c~~l~~~p~ 226 (611)
..+ +.++.|+.+++++|.. .+| .. ...+++|++|++++|...+..|.
T Consensus 265 ~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 342 (520)
T 2z7x_B 265 FRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFE 342 (520)
T ss_dssp CCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTT
T ss_pred cchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhh
Confidence 665 5666655555555443 222 01 16789999999999998888899
Q ss_pred ccCCCCCccEEeccCCCccc---CCccccccCCCcEEEcCCCCCCCCCCcccccccccccCCccchhhccCCCCCCCCCC
Q 007237 227 TLGQVESLEELDISETAVRR---PPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSL 303 (611)
Q Consensus 227 ~l~~l~~L~~L~l~~~~~~~---~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L 303 (611)
.++.+++|+.|++++|.+.. +|..+..+++|++|++++|..... .....+..+++|
T Consensus 343 ~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~---------------------l~~~~~~~l~~L 401 (520)
T 2z7x_B 343 NCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYD---------------------EKKGDCSWTKSL 401 (520)
T ss_dssp TCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCC---------------------GGGCSCCCCTTC
T ss_pred hhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcc---------------------cccchhccCccC
Confidence 99999999999999999985 456788899999999999873211 011126678999
Q ss_pred CEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCCcCCcccccCCCcCeeecccccccCcCCCC----CCCcceeeecC
Q 007237 304 TKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKRLQFLPQL----PPNIIFVKVNG 379 (611)
Q Consensus 304 ~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~l----p~~L~~L~i~~ 379 (611)
+.|++++|.+. +.+|..+. ++|+.|++++|+++.+|..+..+++|++|++++|+ ++.+|.- .++|++|++++
T Consensus 402 ~~L~Ls~N~l~-~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~l~~ 477 (520)
T 2z7x_B 402 LSLNMSSNILT-DTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQ-LKSVPDGIFDRLTSLQKIWLHT 477 (520)
T ss_dssp CEEECCSSCCC-GGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEECcCCCCC-cchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCc-CCccCHHHhccCCcccEEECcC
Confidence 99999999986 44555543 79999999999999999999999999999999995 6666652 23555565555
Q ss_pred CC
Q 007237 380 CS 381 (611)
Q Consensus 380 C~ 381 (611)
++
T Consensus 478 N~ 479 (520)
T 2z7x_B 478 NP 479 (520)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 18
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=2.1e-29 Score=276.86 Aligned_cols=358 Identities=23% Similarity=0.236 Sum_probs=232.3
Q ss_pred cccccCCCcccEEEccCCCCCCcCC-CCCCCcccccccccccccccccCccccccCccccCCCccEEEecCCcCcC-cCC
Q 007237 6 FCFQQHLNMLKVMKLSHSENLIKTP-DFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLR-KFP 83 (611)
Q Consensus 6 ~~~~~~l~~L~~L~Ls~~~~l~~~~-~~~~~~~L~~L~L~~c~~l~~i~~s~~~l~~L~~l~~L~~L~Ls~~~~~~-~lp 83 (611)
...+..+++|++|+|++|+.....| .|..+++|++|++++| .++.+++.. +..+++|++|++++|.+.+ ..|
T Consensus 43 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~-----~~~l~~L~~L~Ls~n~l~~~~~~ 116 (549)
T 2z81_A 43 HGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN-HLSSLSSSW-----FGPLSSLKYLNLMGNPYQTLGVT 116 (549)
T ss_dssp SSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCSCCHHH-----HTTCTTCCEEECTTCCCSSSCSS
T ss_pred hhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCC-ccCccCHHH-----hccCCCCcEEECCCCcccccchh
Confidence 4567889999999999997554444 5899999999999998 566665531 2337889999999998875 567
Q ss_pred cccCCCCCCcEEEcCCCC-ccccC-ccccCCCCCcEEeccCCCCCCCCcccCCCCCCCCEEEecCCCCCcccccc-cCCC
Q 007237 84 HVVGSMECLQELLLDGTD-IKELP-LSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQI-VTTM 160 (611)
Q Consensus 84 ~~l~~l~~L~~L~L~~~~-i~~lp-~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~-~~~l 160 (611)
..++++++|++|+++++. +..+| ..+..+++|++|++++|......|..+..+++|++|++++|... .+|.. +..+
T Consensus 117 ~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l 195 (549)
T 2z81_A 117 SLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADIL 195 (549)
T ss_dssp CSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHST
T ss_pred hhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhc
Confidence 888999999999999988 67776 57888999999999988766667777777777777776665432 22222 2345
Q ss_pred CCCCEEeecCccCCCcC---cc----------------------------------------------------------
Q 007237 161 EDLSELNLDGTSITEVP---SS---------------------------------------------------------- 179 (611)
Q Consensus 161 ~~L~~L~L~~~~i~~l~---~~---------------------------------------------------------- 179 (611)
++|++|++++|.++.++ ..
T Consensus 196 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ 275 (549)
T 2z81_A 196 SSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESD 275 (549)
T ss_dssp TTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTT
T ss_pred ccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchh
Confidence 55555555555544321 00
Q ss_pred -cCC-----------------------------CCCCCEEeccCCcCCcccccCc-cCCCCCCEEEecCCCCCcccC---
Q 007237 180 -IEL-----------------------------LPGLELLNLNDCKNFARVPSSI-NGLKSLKTLNLSGCCKLENVP--- 225 (611)
Q Consensus 180 -l~~-----------------------------l~~L~~L~L~~~~~~~~lp~~i-~~l~~L~~L~l~~c~~l~~~p--- 225 (611)
+.. .++|+.|++++|.. ..+|..+ ..+++|++|++++|...+.+|
T Consensus 276 ~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l-~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 354 (549)
T 2z81_A 276 VVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKV-FLVPCSFSQHLKSLEFLDLSENLMVEEYLKNS 354 (549)
T ss_dssp CCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCC-CCCCHHHHHHCTTCCEEECCSSCCCHHHHHHH
T ss_pred hhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCcc-ccCCHHHHhcCccccEEEccCCccccccccch
Confidence 011 12344444444432 3455444 468889999999888776553
Q ss_pred cccCCCCCccEEeccCCCcccCC---ccccccCCCcEEEcCCCCCCCCCCcccccccccccCCccchhhccCCCCCCCCC
Q 007237 226 DTLGQVESLEELDISETAVRRPP---SSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRS 302 (611)
Q Consensus 226 ~~l~~l~~L~~L~l~~~~~~~~~---~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~ 302 (611)
..++.+++|+.|++++|.+..++ ..+..+++|++|++++|.... ..+.+..+++
T Consensus 355 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-----------------------lp~~~~~~~~ 411 (549)
T 2z81_A 355 ACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP-----------------------MPDSCQWPEK 411 (549)
T ss_dssp TCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCC-----------------------CCSCCCCCTT
T ss_pred hhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCcc-----------------------CChhhccccc
Confidence 33677888999999988888765 346778889999998886321 0112455666
Q ss_pred CCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCCcCCcccccCCCcCeeecccccccCcCCCC--CCCcceeeecCC
Q 007237 303 LTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKRLQFLPQL--PPNIIFVKVNGC 380 (611)
Q Consensus 303 L~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~l--p~~L~~L~i~~C 380 (611)
|+.|++++|.+.. +|..+ .++|+.|++++|+++.++ ..+++|++|++++|+ ++.+|.. .++|+.|+++++
T Consensus 412 L~~L~Ls~N~l~~--l~~~~--~~~L~~L~Ls~N~l~~~~---~~l~~L~~L~Ls~N~-l~~ip~~~~l~~L~~L~Ls~N 483 (549)
T 2z81_A 412 MRFLNLSSTGIRV--VKTCI--PQTLEVLDVSNNNLDSFS---LFLPRLQELYISRNK-LKTLPDASLFPVLLVMKISRN 483 (549)
T ss_dssp CCEEECTTSCCSC--CCTTS--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSC-CSSCCCGGGCTTCCEEECCSS
T ss_pred ccEEECCCCCccc--ccchh--cCCceEEECCCCChhhhc---ccCChhcEEECCCCc-cCcCCCcccCccCCEEecCCC
Confidence 7777777776642 33332 246666677666666554 356666666666663 4555542 456666666665
Q ss_pred CCcccccCc--ccccccCCcccccc
Q 007237 381 SSLVTLLGA--LKLCKSNGIVIECI 403 (611)
Q Consensus 381 ~sL~~l~~~--~~~~~l~~l~~~~c 403 (611)
.++.+... .....++.+++.++
T Consensus 484 -~l~~~~~~~~~~l~~L~~L~l~~N 507 (549)
T 2z81_A 484 -QLKSVPDGIFDRLTSLQKIWLHTN 507 (549)
T ss_dssp -CCCCCCTTGGGGCTTCCEEECCSS
T ss_pred -ccCCcCHHHHhcCcccCEEEecCC
Confidence 34433321 12333444444444
No 19
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.97 E-value=3.9e-29 Score=288.14 Aligned_cols=220 Identities=20% Similarity=0.187 Sum_probs=127.9
Q ss_pred CCCCEEeecCccCCCc-CcccCCCCCCCEEeccCCcCCcccccCccCCCCCCEEEecCCCCCcccCcccCCCCCccEEec
Q 007237 161 EDLSELNLDGTSITEV-PSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDI 239 (611)
Q Consensus 161 ~~L~~L~L~~~~i~~l-~~~l~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~c~~l~~~p~~l~~l~~L~~L~l 239 (611)
++|++|++++|.+..+ +..+..+++|+.|++++|...+..|..+..+++|++|++++|......|..++.+++|+.|++
T Consensus 266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 345 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDL 345 (844)
T ss_dssp SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEEC
T ss_pred CCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEEC
Confidence 4566666666666544 344667777777777777766666666777777777777777665555666777777777777
Q ss_pred cCCCcccCCc-cccccCCCcEEEcCCCCCCCCCCccc-----------------------------------------cc
Q 007237 240 SETAVRRPPS-SVFLMKNLRTLSFSGCNGPPSSASWH-----------------------------------------LH 277 (611)
Q Consensus 240 ~~~~~~~~~~-~~~~l~~L~~L~l~~c~~~~~~~~~~-----------------------------------------~~ 277 (611)
++|.+..++. .+..+++|++|++++|.......... ..
T Consensus 346 ~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l 425 (844)
T 3j0a_A 346 QKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRV 425 (844)
T ss_dssp CSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTC
T ss_pred CCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcC
Confidence 7777665544 34556677777766665221100000 00
Q ss_pred ccccccCCccchhhccCC--CCCCCCCCCEEeccCCCCCC----CCCCCCCCCCCCCCEEEcCCCCCCcCCc-ccccCCC
Q 007237 278 LPFNLMGKSSCLVALMLP--SLSGLRSLTKLDLSDCGLGE----GAIPSDIGNLHSLNELYLSKNNFVTLPA-SINSLLN 350 (611)
Q Consensus 278 ~~~~~~~~~~~~~~~~l~--~l~~l~~L~~L~Ls~~~l~~----~~~~~~l~~l~~L~~L~L~~n~l~~lp~-~i~~l~~ 350 (611)
..+..+....+......+ .+..+++|+.|++++|.+.. +..+..+..+++|+.|+|++|+++.+|. .+..+++
T Consensus 426 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 505 (844)
T 3j0a_A 426 PHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTA 505 (844)
T ss_dssp TTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCS
T ss_pred CccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhh
Confidence 000001011111110001 13456777777777777641 2334556677777777777777775554 3567777
Q ss_pred cCeeecccccccCcCCC--CCCCcceeeecCCC
Q 007237 351 LKELEMEDCKRLQFLPQ--LPPNIIFVKVNGCS 381 (611)
Q Consensus 351 L~~L~L~~c~~L~~lp~--lp~~L~~L~i~~C~ 381 (611)
|+.|+|++|+ ++.+|. ++++|+.|+++++.
T Consensus 506 L~~L~Ls~N~-l~~l~~~~~~~~L~~L~Ls~N~ 537 (844)
T 3j0a_A 506 LRGLSLNSNR-LTVLSHNDLPANLEILDISRNQ 537 (844)
T ss_dssp CSEEEEESCC-CSSCCCCCCCSCCCEEEEEEEC
T ss_pred hheeECCCCC-CCccChhhhhccccEEECCCCc
Confidence 7777777774 555543 45667777776653
No 20
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.97 E-value=8.9e-29 Score=266.10 Aligned_cols=319 Identities=20% Similarity=0.326 Sum_probs=251.6
Q ss_pred CCCcccEEEccCCCCCCcCCCCCCCcccccccccccccccccCccccccCccccCCCccEEEecCCcCcCcCCcccCCCC
Q 007237 11 HLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSME 90 (611)
Q Consensus 11 ~l~~L~~L~Ls~~~~l~~~~~~~~~~~L~~L~L~~c~~l~~i~~s~~~l~~L~~l~~L~~L~Ls~~~~~~~lp~~l~~l~ 90 (611)
.+++|+.|+++++. ...+|.+..+++|++|++++| .++.+++ +..+++|++|++++|.+.+..+ +++++
T Consensus 44 ~l~~l~~L~l~~~~-i~~l~~~~~l~~L~~L~Ls~n-~l~~~~~-------~~~l~~L~~L~l~~n~l~~~~~--~~~l~ 112 (466)
T 1o6v_A 44 DLDQVTTLQADRLG-IKSIDGVEYLNNLTQINFSNN-QLTDITP-------LKNLTKLVDILMNNNQIADITP--LANLT 112 (466)
T ss_dssp HHHTCCEEECCSSC-CCCCTTGGGCTTCCEEECCSS-CCCCCGG-------GTTCTTCCEEECCSSCCCCCGG--GTTCT
T ss_pred HhccccEEecCCCC-CccCcchhhhcCCCEEECCCC-ccCCchh-------hhccccCCEEECCCCccccChh--hcCCC
Confidence 36789999998875 456788889999999999998 5666654 3347889999999998766544 88999
Q ss_pred CCcEEEcCCCCccccCccccCCCCCcEEeccCCCCCCCCcccCCCCCCCCEEEecCCCCCcccccccCCCCCCCEEeecC
Q 007237 91 CLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDG 170 (611)
Q Consensus 91 ~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~~~~l~~L~~L~L~~ 170 (611)
+|++|+++++.++.++. +.++++|++|++++|. +..++. +..+++|+.|++++ .....+. +.++++|++|++++
T Consensus 113 ~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~--~~~~~~~-~~~l~~L~~L~l~~ 186 (466)
T 1o6v_A 113 NLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNT-ISDISA-LSGLTSLQQLSFGN--QVTDLKP-LANLTTLERLDISS 186 (466)
T ss_dssp TCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEE-ECCCGG-GTTCTTCSEEEEEE--SCCCCGG-GTTCTTCCEEECCS
T ss_pred CCCEEECCCCCCCCChH-HcCCCCCCEEECCCCc-cCCChh-hccCCcccEeecCC--cccCchh-hccCCCCCEEECcC
Confidence 99999999999998876 8899999999999875 556664 78899999999974 2333333 78899999999999
Q ss_pred ccCCCcCcccCCCCCCCEEeccCCcCCcccccCccCCCCCCEEEecCCCCCcccCcccCCCCCccEEeccCCCcccCCcc
Q 007237 171 TSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSS 250 (611)
Q Consensus 171 ~~i~~l~~~l~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~c~~l~~~p~~l~~l~~L~~L~l~~~~~~~~~~~ 250 (611)
|.++.++. +..+++|++|++++|...+..| ++.+++|++|++++|.... ++ .+..+++|+.|++++|.+..++.
T Consensus 187 n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~- 260 (466)
T 1o6v_A 187 NKVSDISV-LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-IG-TLASLTNLTDLDLANNQISNLAP- 260 (466)
T ss_dssp SCCCCCGG-GGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CG-GGGGCTTCSEEECCSSCCCCCGG-
T ss_pred CcCCCChh-hccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCccc-ch-hhhcCCCCCEEECCCCccccchh-
Confidence 99887754 7888999999999988766554 6778999999999986543 33 57788999999999999887766
Q ss_pred ccccCCCcEEEcCCCCCCCCCCcccccccccccCCccchhhccCCCCCCCCCCCEEeccCCCCCCCCCCCCCCCCCCCCE
Q 007237 251 VFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNE 330 (611)
Q Consensus 251 ~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~L~~ 330 (611)
+..+++|+.|++++|.... ++.+..+++|+.|++++|.+.. ++. +..+++|+.
T Consensus 261 ~~~l~~L~~L~l~~n~l~~------------------------~~~~~~l~~L~~L~L~~n~l~~--~~~-~~~l~~L~~ 313 (466)
T 1o6v_A 261 LSGLTKLTELKLGANQISN------------------------ISPLAGLTALTNLELNENQLED--ISP-ISNLKNLTY 313 (466)
T ss_dssp GTTCTTCSEEECCSSCCCC------------------------CGGGTTCTTCSEEECCSSCCSC--CGG-GGGCTTCSE
T ss_pred hhcCCCCCEEECCCCccCc------------------------cccccCCCccCeEEcCCCcccC--chh-hcCCCCCCE
Confidence 7788999999999886321 1226678889999999998853 333 778889999
Q ss_pred EEcCCCCCCcCCcccccCCCcCeeecccccccCcCCCC--CCCcceeeecCCC
Q 007237 331 LYLSKNNFVTLPASINSLLNLKELEMEDCKRLQFLPQL--PPNIIFVKVNGCS 381 (611)
Q Consensus 331 L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~l--p~~L~~L~i~~C~ 381 (611)
|++++|++..++. +..+++|++|++++|+ +..++.+ .++|+.|++++|.
T Consensus 314 L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 314 LTLYFNNISDISP-VSSLTKLQRLFFYNNK-VSDVSSLANLTNINWLSAGHNQ 364 (466)
T ss_dssp EECCSSCCSCCGG-GGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSC
T ss_pred EECcCCcCCCchh-hccCccCCEeECCCCc-cCCchhhccCCCCCEEeCCCCc
Confidence 9999998887765 7888999999998885 5555432 3577777777774
No 21
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.97 E-value=1.3e-28 Score=283.64 Aligned_cols=334 Identities=17% Similarity=0.178 Sum_probs=237.8
Q ss_pred CCCcccEEEccCCCCCCcC-CCCCCCcccccccccccccccccCccccccCccccCCCccEEEecCCcCcCcCCcccCCC
Q 007237 11 HLNMLKVMKLSHSENLIKT-PDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSM 89 (611)
Q Consensus 11 ~l~~L~~L~Ls~~~~l~~~-~~~~~~~~L~~L~L~~c~~l~~i~~s~~~l~~L~~l~~L~~L~Ls~~~~~~~lp~~l~~l 89 (611)
-.++|++|||++|...... .+|..+++|++|+|++|.....+++. .+..+++|++|+|++|.+.+..|..++++
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~-----~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l 96 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKE-----AFRNLPNLRILDLGSSKIYFLHPDAFQGL 96 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTT-----TTSSCTTCCEEECTTCCCCEECTTSSCSC
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHH-----HhcCCCCCCEEECCCCcCcccCHhHccCC
Confidence 3578999999999754443 36999999999999998666666432 23347899999999999988889999999
Q ss_pred CCCcEEEcCCCCccc-cCcc--ccCCCCCcEEeccCCCCCCCCc-ccCCCCCCCCEEEecCCCCCcccccccCCC--CCC
Q 007237 90 ECLQELLLDGTDIKE-LPLS--IEHLFGLVQLTLNDCKNLSSLP-VAISSFQCLRNLKLSGCSKLKKFPQIVTTM--EDL 163 (611)
Q Consensus 90 ~~L~~L~L~~~~i~~-lp~~--~~~l~~L~~L~L~~c~~l~~lp-~~l~~l~~L~~L~L~~~~~l~~~p~~~~~l--~~L 163 (611)
++|++|++++|.+.. +|.. ++++++|++|++++|......+ ..++++++|++|++++|......+..+..+ ++|
T Consensus 97 ~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L 176 (844)
T 3j0a_A 97 FHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTL 176 (844)
T ss_dssp SSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSS
T ss_pred cccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCcc
Confidence 999999999999985 5554 8999999999999977554433 468899999999999988777777777766 789
Q ss_pred CEEeecCccCCC-cCcccCCCCC------CCEEeccCCcCCcccccCcc-------------------------------
Q 007237 164 SELNLDGTSITE-VPSSIELLPG------LELLNLNDCKNFARVPSSIN------------------------------- 205 (611)
Q Consensus 164 ~~L~L~~~~i~~-l~~~l~~l~~------L~~L~L~~~~~~~~lp~~i~------------------------------- 205 (611)
+.|++++|.+.. .|..++.+++ |+.|++++|......+..+.
T Consensus 177 ~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~ 256 (844)
T 3j0a_A 177 SFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPD 256 (844)
T ss_dssp CCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGG
T ss_pred ceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCC
Confidence 999999888874 4444555544 88888888865444333221
Q ss_pred -----C--CCCCCEEEecCCCCCcccCcccCCCCCccEEeccCCCcccC-CccccccCCCcEEEcCCCCCCCCCCccccc
Q 007237 206 -----G--LKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRP-PSSVFLMKNLRTLSFSGCNGPPSSASWHLH 277 (611)
Q Consensus 206 -----~--l~~L~~L~l~~c~~l~~~p~~l~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~ 277 (611)
. .++|+.|++++|......+..++.+++|+.|++++|.+..+ +..+..+++|++|++++|.....
T Consensus 257 ~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~------- 329 (844)
T 3j0a_A 257 QNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGEL------- 329 (844)
T ss_dssp GTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCC-------
T ss_pred hhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCcc-------
Confidence 1 25788888888777666677788888888888888888755 45667788888888888763211
Q ss_pred ccccccCCccchhhccCCCCCCCCCCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCCcCCcccccCCCcCeeecc
Q 007237 278 LPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEME 357 (611)
Q Consensus 278 ~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~ 357 (611)
....+..+++|+.|++++|.+. ...+..+..+++|+.|++++|.++.++. +++|+.|+++
T Consensus 330 ---------------~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~i~~----~~~L~~L~l~ 389 (844)
T 3j0a_A 330 ---------------YSSNFYGLPKVAYIDLQKNHIA-IIQDQTFKFLEKLQTLDLRDNALTTIHF----IPSIPDIFLS 389 (844)
T ss_dssp ---------------CSCSCSSCTTCCEEECCSCCCC-CCCSSCSCSCCCCCEEEEETCCSCCCSS----CCSCSEEEEE
T ss_pred ---------------CHHHhcCCCCCCEEECCCCCCC-ccChhhhcCCCCCCEEECCCCCCCcccC----CCCcchhccC
Confidence 1122556666677777666663 2333456666666677766666665543 5566666666
Q ss_pred cccccCcCCCCCCCcceeee
Q 007237 358 DCKRLQFLPQLPPNIIFVKV 377 (611)
Q Consensus 358 ~c~~L~~lp~lp~~L~~L~i 377 (611)
+|+ +..+|..+.+++.|++
T Consensus 390 ~N~-l~~l~~~~~~l~~L~l 408 (844)
T 3j0a_A 390 GNK-LVTLPKINLTANLIHL 408 (844)
T ss_dssp SCC-CCCCCCCCTTCCEEEC
T ss_pred CCC-cccccccccccceeec
Confidence 654 3445444444444433
No 22
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.97 E-value=2.2e-28 Score=263.97 Aligned_cols=314 Identities=21% Similarity=0.228 Sum_probs=267.6
Q ss_pred cEEEccCCCCCCcCCCCCCCcccccccccccccccccCccccccCccccCCCccEEEecCCcCcCcCCcccCCCCCCcEE
Q 007237 16 KVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQEL 95 (611)
Q Consensus 16 ~~L~Ls~~~~l~~~~~~~~~~~L~~L~L~~c~~l~~i~~s~~~l~~L~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L 95 (611)
+.++.++. .+..+|. .-.++|+.|+|+++ .++.+++. .+..+++|++|+|++|.+.+..|..+.++++|++|
T Consensus 14 ~~v~c~~~-~l~~ip~-~~~~~l~~L~L~~n-~l~~~~~~-----~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 85 (477)
T 2id5_A 14 RAVLCHRK-RFVAVPE-GIPTETRLLDLGKN-RIKTLNQD-----EFASFPHLEELELNENIVSAVEPGAFNNLFNLRTL 85 (477)
T ss_dssp TEEECCSC-CCSSCCS-CCCTTCSEEECCSS-CCCEECTT-----TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CEEEeCCC-CcCcCCC-CCCCCCcEEECCCC-ccceECHh-----HccCCCCCCEEECCCCccCEeChhhhhCCccCCEE
Confidence 56777665 4556664 22468999999997 66666542 23448899999999999888889999999999999
Q ss_pred EcCCCCccccCcc-ccCCCCCcEEeccCCCCCCCCcccCCCCCCCCEEEecCCCCCcccccccCCCCCCCEEeecCccCC
Q 007237 96 LLDGTDIKELPLS-IEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSIT 174 (611)
Q Consensus 96 ~L~~~~i~~lp~~-~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~~~~l~~L~~L~L~~~~i~ 174 (611)
++++|.++.+|.. +.++++|++|++++|......|..+.++++|+.|++++|......+..+..+++|++|++++|.++
T Consensus 86 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 165 (477)
T 2id5_A 86 GLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT 165 (477)
T ss_dssp ECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS
T ss_pred ECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc
Confidence 9999999999864 789999999999998766666777899999999999998877777888999999999999999999
Q ss_pred CcCcc-cCCCCCCCEEeccCCcCCcccccCccCCCCCCEEEecCCCCCcccCcccCCCCCccEEeccCCCcccCCc-ccc
Q 007237 175 EVPSS-IELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPS-SVF 252 (611)
Q Consensus 175 ~l~~~-l~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~c~~l~~~p~~l~~l~~L~~L~l~~~~~~~~~~-~~~ 252 (611)
.++.. +..+++|+.|++++|......+..+..+++|+.|++++|.....+|.......+|+.|++++|.+..+|. .+.
T Consensus 166 ~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 245 (477)
T 2id5_A 166 SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVR 245 (477)
T ss_dssp SCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHT
T ss_pred ccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhc
Confidence 88864 8999999999999998887777789999999999999999999988887777899999999999998884 577
Q ss_pred ccCCCcEEEcCCCCCCCCCCcccccccccccCCccchhhccCCCCCCCCCCCEEeccCCCCCCCCCCCCCCCCCCCCEEE
Q 007237 253 LMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELY 332 (611)
Q Consensus 253 ~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~ 332 (611)
.+++|+.|++++|.... .....+..+++|+.|++++|.+. +..|..+..+++|+.|+
T Consensus 246 ~l~~L~~L~Ls~n~l~~----------------------~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~ 302 (477)
T 2id5_A 246 HLVYLRFLNLSYNPIST----------------------IEGSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLN 302 (477)
T ss_dssp TCTTCCEEECCSSCCCE----------------------ECTTSCTTCTTCCEEECCSSCCS-EECTTTBTTCTTCCEEE
T ss_pred CccccCeeECCCCcCCc----------------------cChhhccccccCCEEECCCCccc-eECHHHhcCcccCCEEE
Confidence 89999999999987221 11223778899999999999996 45678899999999999
Q ss_pred cCCCCCCcCCcc-cccCCCcCeeeccccc
Q 007237 333 LSKNNFVTLPAS-INSLLNLKELEMEDCK 360 (611)
Q Consensus 333 L~~n~l~~lp~~-i~~l~~L~~L~L~~c~ 360 (611)
|++|+++.+|.. +..+++|+.|++++|+
T Consensus 303 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 303 VSGNQLTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp CCSSCCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred CCCCcCceeCHhHcCCCcccCEEEccCCC
Confidence 999999988864 6889999999999987
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.96 E-value=2e-28 Score=269.77 Aligned_cols=148 Identities=19% Similarity=0.148 Sum_probs=86.3
Q ss_pred CCcccEEEccCCCCCCcCCCCCCCcccccccccccccccccCccccccCccccCCCccEEEecCCcCcCcCCcccCCCCC
Q 007237 12 LNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMEC 91 (611)
Q Consensus 12 l~~L~~L~Ls~~~~l~~~~~~~~~~~L~~L~L~~c~~l~~i~~s~~~l~~L~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~ 91 (611)
+...+++|++++. +..+|.- -.++|++|++++| .++.+++. .+..+++|++|+|++|.+.+..|..++.+++
T Consensus 30 ~~~~~~l~ls~~~-L~~ip~~-~~~~L~~L~Ls~N-~i~~~~~~-----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 101 (562)
T 3a79_B 30 NELESMVDYSNRN-LTHVPKD-LPPRTKALSLSQN-SISELRMP-----DISFLSELRVLRLSHNRIRSLDFHVFLFNQD 101 (562)
T ss_dssp ---CCEEECTTSC-CCSCCTT-SCTTCCEEECCSS-CCCCCCGG-----GTTTCTTCCEEECCSCCCCEECTTTTTTCTT
T ss_pred cCCCcEEEcCCCC-CccCCCC-CCCCcCEEECCCC-CccccChh-----hhccCCCccEEECCCCCCCcCCHHHhCCCCC
Confidence 3344667777663 3445431 1267777777766 44444431 1233666777777777666666666777777
Q ss_pred CcEEEcCCCCccccCccccCCCCCcEEeccCCCCCCCC--cccCCCCCCCCEEEecCCCCCcccccccCCCCCC--CEEe
Q 007237 92 LQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSL--PVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDL--SELN 167 (611)
Q Consensus 92 L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~c~~l~~l--p~~l~~l~~L~~L~L~~~~~l~~~p~~~~~l~~L--~~L~ 167 (611)
|++|++++|.++.+|.. .+++|++|++++|. +..+ |..++++++|++|++++|..... .+..+++| ++|+
T Consensus 102 L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~ 175 (562)
T 3a79_B 102 LEYLDVSHNRLQNISCC--PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCIL 175 (562)
T ss_dssp CCEEECTTSCCCEECSC--CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEE
T ss_pred CCEEECCCCcCCccCcc--ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEE
Confidence 77777777777777665 66777777777654 3333 35566677777777776554332 22333333 6666
Q ss_pred ecCccC
Q 007237 168 LDGTSI 173 (611)
Q Consensus 168 L~~~~i 173 (611)
+++|.+
T Consensus 176 L~~n~l 181 (562)
T 3a79_B 176 LDLVSY 181 (562)
T ss_dssp EEESSC
T ss_pred eecccc
Confidence 666555
No 24
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.96 E-value=2e-28 Score=263.40 Aligned_cols=325 Identities=18% Similarity=0.293 Sum_probs=260.5
Q ss_pred cccccCCCcccEEEccCCCCCCcCCCCCCCcccccccccccccccccCccccccCccccCCCccEEEecCCcCcCcCCcc
Q 007237 6 FCFQQHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHV 85 (611)
Q Consensus 6 ~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~L~~L~L~~c~~l~~i~~s~~~l~~L~~l~~L~~L~Ls~~~~~~~lp~~ 85 (611)
..+++.+++|++|++++|. +..++.+..+++|++|++++| .+..+++ +..+++|++|++++|.+.+. +.
T Consensus 61 l~~~~~l~~L~~L~Ls~n~-l~~~~~~~~l~~L~~L~l~~n-~l~~~~~-------~~~l~~L~~L~L~~n~l~~~-~~- 129 (466)
T 1o6v_A 61 IDGVEYLNNLTQINFSNNQ-LTDITPLKNLTKLVDILMNNN-QIADITP-------LANLTNLTGLTLFNNQITDI-DP- 129 (466)
T ss_dssp CTTGGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSS-CCCCCGG-------GTTCTTCCEEECCSSCCCCC-GG-
T ss_pred CcchhhhcCCCEEECCCCc-cCCchhhhccccCCEEECCCC-ccccChh-------hcCCCCCCEEECCCCCCCCC-hH-
Confidence 3467889999999999996 444555999999999999998 5555543 34589999999999987654 33
Q ss_pred cCCCCCCcEEEcCCCCccccCccccCCCCCcEEeccCCCCCCCCcccCCCCCCCCEEEecCCCCCcccccccCCCCCCCE
Q 007237 86 VGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSE 165 (611)
Q Consensus 86 l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~~~~l~~L~~ 165 (611)
+..+++|++|+++++.+..++ .+..+++|++|++++ .+..++. +.++++|+.|++++|.. ..++ .+..+++|++
T Consensus 130 ~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~--~~~~~~~-~~~l~~L~~L~l~~n~l-~~~~-~l~~l~~L~~ 203 (466)
T 1o6v_A 130 LKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGN--QVTDLKP-LANLTTLERLDISSNKV-SDIS-VLAKLTNLES 203 (466)
T ss_dssp GTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEEE--SCCCCGG-GTTCTTCCEEECCSSCC-CCCG-GGGGCTTCSE
T ss_pred HcCCCCCCEEECCCCccCCCh-hhccCCcccEeecCC--cccCchh-hccCCCCCEEECcCCcC-CCCh-hhccCCCCCE
Confidence 899999999999999999887 489999999999974 3455554 88899999999999864 3343 4788999999
Q ss_pred EeecCccCCCcCcccCCCCCCCEEeccCCcCCcccccCccCCCCCCEEEecCCCCCcccCcccCCCCCccEEeccCCCcc
Q 007237 166 LNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVR 245 (611)
Q Consensus 166 L~L~~~~i~~l~~~l~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~c~~l~~~p~~l~~l~~L~~L~l~~~~~~ 245 (611)
|++++|.+..++. ++.+++|+.|++++|.... + ..+..+++|+.|++++|......+ +..+++|+.|++++|.+.
T Consensus 204 L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~ 278 (466)
T 1o6v_A 204 LIATNNQISDITP-LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQIS 278 (466)
T ss_dssp EECCSSCCCCCGG-GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCC
T ss_pred EEecCCccccccc-ccccCCCCEEECCCCCccc-c-hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccC
Confidence 9999999998766 7889999999999987654 3 357889999999999987655443 888999999999999999
Q ss_pred cCCccccccCCCcEEEcCCCCCCCCCCcccccccccccCCccchhhccCCCCCCCCCCCEEeccCCCCCCCCCCCCCCCC
Q 007237 246 RPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNL 325 (611)
Q Consensus 246 ~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l 325 (611)
.++. +..+++|+.|++++|.... ++.+..+++|+.|++++|.+.. ..| +..+
T Consensus 279 ~~~~-~~~l~~L~~L~L~~n~l~~------------------------~~~~~~l~~L~~L~L~~n~l~~-~~~--~~~l 330 (466)
T 1o6v_A 279 NISP-LAGLTALTNLELNENQLED------------------------ISPISNLKNLTYLTLYFNNISD-ISP--VSSL 330 (466)
T ss_dssp CCGG-GTTCTTCSEEECCSSCCSC------------------------CGGGGGCTTCSEEECCSSCCSC-CGG--GGGC
T ss_pred cccc-ccCCCccCeEEcCCCcccC------------------------chhhcCCCCCCEEECcCCcCCC-chh--hccC
Confidence 8877 7889999999999987321 2226678899999999999863 233 7889
Q ss_pred CCCCEEEcCCCCCCcCCcccccCCCcCeeecccccccCcCC-CCCCCcceeeecCCC
Q 007237 326 HSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKRLQFLP-QLPPNIIFVKVNGCS 381 (611)
Q Consensus 326 ~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp-~lp~~L~~L~i~~C~ 381 (611)
++|+.|++++|+++.++ .+..+++|+.|++++|+.....| .-.++|+.|++.+|+
T Consensus 331 ~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 331 TKLQRLFFYNNKVSDVS-SLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQA 386 (466)
T ss_dssp TTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCBCGGGTTCTTCCEEECCCEE
T ss_pred ccCCEeECCCCccCCch-hhccCCCCCEEeCCCCccCccchhhcCCCCCEEeccCCc
Confidence 99999999999999885 78899999999999997433222 112455556655543
No 25
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.96 E-value=2.3e-27 Score=267.45 Aligned_cols=270 Identities=21% Similarity=0.173 Sum_probs=126.7
Q ss_pred CcEEeccCCCCCCCCcccCCCCCCCCEEEecCCCCCcccccccCCCCCCCEEeecCccCC------CcCc----ccCCCC
Q 007237 115 LVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSIT------EVPS----SIELLP 184 (611)
Q Consensus 115 L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~~~~l~~L~~L~L~~~~i~------~l~~----~l~~l~ 184 (611)
|++|++++|......|..+..+++|+.|++++|...+..|..+..+++|++|++.++... .+|. .+..++
T Consensus 250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~ 329 (680)
T 1ziw_A 250 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLK 329 (680)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCT
T ss_pred CCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCC
Confidence 444444444322222333444555555555554444444444444444444444433211 1221 344455
Q ss_pred CCCEEeccCCcCCcccccCccCCCCCCEEEecCCC----------------------------CCcccCcccCCCCCccE
Q 007237 185 GLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCC----------------------------KLENVPDTLGQVESLEE 236 (611)
Q Consensus 185 ~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~c~----------------------------~l~~~p~~l~~l~~L~~ 236 (611)
+|+.|++++|...+..+..+..+++|++|++++|. .....|..++.+++|+.
T Consensus 330 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 409 (680)
T 1ziw_A 330 CLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEV 409 (680)
T ss_dssp TCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCE
Confidence 55555555555554444455555555555555442 22223344455555555
Q ss_pred EeccCCCcc-cCC-ccccccCCCcEEEcCCCCCCCCC-CcccccccccccCCccch---hhccCCCCCCCCCCCEEeccC
Q 007237 237 LDISETAVR-RPP-SSVFLMKNLRTLSFSGCNGPPSS-ASWHLHLPFNLMGKSSCL---VALMLPSLSGLRSLTKLDLSD 310 (611)
Q Consensus 237 L~l~~~~~~-~~~-~~~~~l~~L~~L~l~~c~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~l~~l~~l~~L~~L~Ls~ 310 (611)
|++++|.+. .+| ..+..+++|++|++++|...... ........+..+....+. .+.....+..+++|+.|++++
T Consensus 410 L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~ 489 (680)
T 1ziw_A 410 LDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSN 489 (680)
T ss_dssp EECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCS
T ss_pred EeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCC
Confidence 555555554 233 34445555555555555411000 000000011111111110 011122356666777777777
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEcCCCCCCcCCc---------ccccCCCcCeeecccccccCcCCC--C--CCCcceeee
Q 007237 311 CGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPA---------SINSLLNLKELEMEDCKRLQFLPQ--L--PPNIIFVKV 377 (611)
Q Consensus 311 ~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~---------~i~~l~~L~~L~L~~c~~L~~lp~--l--p~~L~~L~i 377 (611)
|++. +..+..+..+++|+.|++++|+++.++. .+..+++|+.|++++|. ++.+|. + .++|+.|++
T Consensus 490 N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~L 567 (680)
T 1ziw_A 490 NNIA-NINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNG-FDEIPVEVFKDLFELKIIDL 567 (680)
T ss_dssp SCCC-CCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred CCCC-cCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCC-CCCCCHHHcccccCcceeEC
Confidence 7664 3334456667777777777776664422 25666777777777664 445543 1 245666666
Q ss_pred cCCCCccccc
Q 007237 378 NGCSSLVTLL 387 (611)
Q Consensus 378 ~~C~sL~~l~ 387 (611)
+++ .++.++
T Consensus 568 s~N-~l~~l~ 576 (680)
T 1ziw_A 568 GLN-NLNTLP 576 (680)
T ss_dssp CSS-CCCCCC
T ss_pred CCC-CCCcCC
Confidence 443 344443
No 26
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.96 E-value=5.6e-28 Score=272.49 Aligned_cols=350 Identities=20% Similarity=0.212 Sum_probs=193.5
Q ss_pred CcccccCCCcccEEEccCCCCCCcCCC-CCCCcccccccccccccccccCccccccCccccCCCccEEEecCCcCcCcCC
Q 007237 5 PFCFQQHLNMLKVMKLSHSENLIKTPD-FTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFP 83 (611)
Q Consensus 5 ~~~~~~~l~~L~~L~Ls~~~~l~~~~~-~~~~~~L~~L~L~~c~~l~~i~~s~~~l~~L~~l~~L~~L~Ls~~~~~~~lp 83 (611)
|...+..+++|++|+|++|......|. |..+++|++|+|++| .++.+|+. .+..+++|++|++++|.+.+..|
T Consensus 41 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~-----~~~~l~~L~~L~L~~n~l~~~~~ 114 (680)
T 1ziw_A 41 PAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-ELSQLSDK-----TFAFCTNLTELHLMSNSIQKIKN 114 (680)
T ss_dssp CGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS-CCCCCCTT-----TTTTCTTCSEEECCSSCCCCCCS
T ss_pred CHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC-ccCccChh-----hhccCCCCCEEECCCCccCccCh
Confidence 444566777777777777754443343 566777777777776 55555542 12225666666666666655555
Q ss_pred cccCCCCCCcEEEcCCCCcccc-CccccCCCCCcEEeccCCCCCCCCcccC--CCCCCCCEEEecCCCCC----------
Q 007237 84 HVVGSMECLQELLLDGTDIKEL-PLSIEHLFGLVQLTLNDCKNLSSLPVAI--SSFQCLRNLKLSGCSKL---------- 150 (611)
Q Consensus 84 ~~l~~l~~L~~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~c~~l~~lp~~l--~~l~~L~~L~L~~~~~l---------- 150 (611)
..++++++|++|++++|.+..+ |..++++++|++|++++|......+..+ ..+++|+.|++++|...
T Consensus 115 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l 194 (680)
T 1ziw_A 115 NPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAI 194 (680)
T ss_dssp CTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGS
T ss_pred hHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhh
Confidence 5666666666666666666543 3445666666666666654322222222 12355555555555333
Q ss_pred -----------------------------------------cccccccCCCC--CCCEEeecCccCCCcC-cccCCCCCC
Q 007237 151 -----------------------------------------KKFPQIVTTME--DLSELNLDGTSITEVP-SSIELLPGL 186 (611)
Q Consensus 151 -----------------------------------------~~~p~~~~~l~--~L~~L~L~~~~i~~l~-~~l~~l~~L 186 (611)
+..|..+..++ +|++|++++|.++.++ ..++.+++|
T Consensus 195 ~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 274 (680)
T 1ziw_A 195 GRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQL 274 (680)
T ss_dssp SEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred hhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccc
Confidence 23333333332 3666666666666543 346666777
Q ss_pred CEEeccCCcCCcccccCccCCCCCCEEEecCCCCCc-----ccCc----ccCCCCCccEEeccCCCcccCC-ccccccCC
Q 007237 187 ELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLE-----NVPD----TLGQVESLEELDISETAVRRPP-SSVFLMKN 256 (611)
Q Consensus 187 ~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~c~~l~-----~~p~----~l~~l~~L~~L~l~~~~~~~~~-~~~~~l~~ 256 (611)
+.|++++|...+..|..+..+++|+.|++++|.... .+|. .++.+++|+.|++++|.+..++ ..+..+++
T Consensus 275 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 354 (680)
T 1ziw_A 275 EYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLIN 354 (680)
T ss_dssp CEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTT
T ss_pred cEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccC
Confidence 777777766666666666677777777776543321 2332 4666777777777777777554 34566777
Q ss_pred CcEEEcCCCCCCCC-CC---cccc-cccccccCCccch-hhccCCCCCCCCCCCEEeccCCCCCCCCCCCCCCCCCCCCE
Q 007237 257 LRTLSFSGCNGPPS-SA---SWHL-HLPFNLMGKSSCL-VALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNE 330 (611)
Q Consensus 257 L~~L~l~~c~~~~~-~~---~~~~-~~~~~~~~~~~~~-~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~L~~ 330 (611)
|++|++++|..... .. .... ...+..+....+. .......+..+++|+.|++++|.+.....+..+..+++|++
T Consensus 355 L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~ 434 (680)
T 1ziw_A 355 LKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFE 434 (680)
T ss_dssp CCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCE
T ss_pred CcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccE
Confidence 88888877652110 00 0000 0011111111111 11112235666777777777776642222245566666666
Q ss_pred EEcCCCCCCcC-CcccccCCCcCeeeccccc
Q 007237 331 LYLSKNNFVTL-PASINSLLNLKELEMEDCK 360 (611)
Q Consensus 331 L~L~~n~l~~l-p~~i~~l~~L~~L~L~~c~ 360 (611)
|++++|++..+ +..+..+++|+.|++++|.
T Consensus 435 L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~ 465 (680)
T 1ziw_A 435 IYLSYNKYLQLTRNSFALVPSLQRLMLRRVA 465 (680)
T ss_dssp EECCSCSEEECCTTTTTTCTTCCEEECTTSC
T ss_pred EecCCCCcceeChhhhhcCcccccchhcccc
Confidence 66666665533 2345555566666665554
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.96 E-value=1.1e-28 Score=264.60 Aligned_cols=355 Identities=16% Similarity=0.120 Sum_probs=269.1
Q ss_pred cEEEccCCCCCCcCCCCCCCcccccccccccccccccCccccccCccccCCCccEEEecCCcCcCcC-CcccCCCCCCcE
Q 007237 16 KVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKF-PHVVGSMECLQE 94 (611)
Q Consensus 16 ~~L~Ls~~~~l~~~~~~~~~~~L~~L~L~~c~~l~~i~~s~~~l~~L~~l~~L~~L~Ls~~~~~~~l-p~~l~~l~~L~~ 94 (611)
+.++.+++ .+..+|.+ .++|++|+|+++ .++.+++. .+..+++|++|++++|...+.+ +..+..+++|++
T Consensus 13 ~~~~c~~~-~l~~lp~l--~~~l~~L~Ls~n-~i~~~~~~-----~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~ 83 (455)
T 3v47_A 13 YNAICINR-GLHQVPEL--PAHVNYVDLSLN-SIAELNET-----SFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLII 83 (455)
T ss_dssp TEEECCSS-CCSSCCCC--CTTCCEEECCSS-CCCEECTT-----TTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCE
T ss_pred cccCcCCC-CcccCCCC--CCccCEEEecCC-ccCcCChh-----HhccCccccEEECcCCcccceECcccccccccCCE
Confidence 45666655 56777773 489999999998 56655332 2334889999999999887555 567999999999
Q ss_pred EEcCCCCcccc-CccccCCCCCcEEeccCCCCCCCCccc--CCCCCCCCEEEecCCCCCcccccc-cCCCCCCCEEeecC
Q 007237 95 LLLDGTDIKEL-PLSIEHLFGLVQLTLNDCKNLSSLPVA--ISSFQCLRNLKLSGCSKLKKFPQI-VTTMEDLSELNLDG 170 (611)
Q Consensus 95 L~L~~~~i~~l-p~~~~~l~~L~~L~L~~c~~l~~lp~~--l~~l~~L~~L~L~~~~~l~~~p~~-~~~l~~L~~L~L~~ 170 (611)
|++++|.+..+ |..++.+++|++|++++|.....+|.. +.++++|++|++++|......|.. +.++++|++|++++
T Consensus 84 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~ 163 (455)
T 3v47_A 84 LKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTF 163 (455)
T ss_dssp EECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTT
T ss_pred EeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCC
Confidence 99999999876 778999999999999998755445554 888999999999999877776765 88999999999999
Q ss_pred ccCCCcC-cccCCC--CCCCEEeccCCcCCcccccC--------ccCCCCCCEEEecCCCCCcccCcccCC---CCCccE
Q 007237 171 TSITEVP-SSIELL--PGLELLNLNDCKNFARVPSS--------INGLKSLKTLNLSGCCKLENVPDTLGQ---VESLEE 236 (611)
Q Consensus 171 ~~i~~l~-~~l~~l--~~L~~L~L~~~~~~~~lp~~--------i~~l~~L~~L~l~~c~~l~~~p~~l~~---l~~L~~ 236 (611)
|.++.++ ..+..+ .+|+.|++++|......+.. +..+++|++|++++|...+..|..+.. .++|+.
T Consensus 164 n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~ 243 (455)
T 3v47_A 164 NKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQS 243 (455)
T ss_dssp CCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEE
T ss_pred CcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceee
Confidence 9998654 345444 68999999998866544332 346789999999999887777665543 389999
Q ss_pred EeccCCCcccCC-----------cccc--ccCCCcEEEcCCCCCCCCCCcccccccccccCCccchhhccCCCCCCCCCC
Q 007237 237 LDISETAVRRPP-----------SSVF--LMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSL 303 (611)
Q Consensus 237 L~l~~~~~~~~~-----------~~~~--~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L 303 (611)
|+++++...... ..+. ..++|+.|++++|.... .....+..+++|
T Consensus 244 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~----------------------~~~~~~~~l~~L 301 (455)
T 3v47_A 244 LILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFA----------------------LLKSVFSHFTDL 301 (455)
T ss_dssp EECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCE----------------------ECTTTTTTCTTC
T ss_pred EeeccccccccccchhhhccCcccccccccccCceEEEecCccccc----------------------cchhhcccCCCC
Confidence 999988544211 1111 24689999999987321 122337889999
Q ss_pred CEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCCcC-CcccccCCCcCeeecccccccCcCCC---CCCCcceeeecC
Q 007237 304 TKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTL-PASINSLLNLKELEMEDCKRLQFLPQ---LPPNIIFVKVNG 379 (611)
Q Consensus 304 ~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~l-p~~i~~l~~L~~L~L~~c~~L~~lp~---lp~~L~~L~i~~ 379 (611)
+.|++++|.+. +..|..+..+++|+.|++++|.+..+ |..+..+++|++|++++|+.-...|. -.++|++|++++
T Consensus 302 ~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 380 (455)
T 3v47_A 302 EQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDT 380 (455)
T ss_dssp CEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEECCCCccc-ccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCC
Confidence 99999999996 45677899999999999999999976 56789999999999999974333343 236899999988
Q ss_pred CCCcccccCc--ccccccCCcccccc
Q 007237 380 CSSLVTLLGA--LKLCKSNGIVIECI 403 (611)
Q Consensus 380 C~sL~~l~~~--~~~~~l~~l~~~~c 403 (611)
+ .++.++.. ....+++.+.+.++
T Consensus 381 N-~l~~~~~~~~~~l~~L~~L~l~~N 405 (455)
T 3v47_A 381 N-QLKSVPDGIFDRLTSLQKIWLHTN 405 (455)
T ss_dssp S-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred C-ccccCCHhHhccCCcccEEEccCC
Confidence 6 45555532 23455666666554
No 28
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.96 E-value=5.1e-28 Score=266.53 Aligned_cols=329 Identities=19% Similarity=0.172 Sum_probs=234.5
Q ss_pred CcccEEEccCCCCCCcCC-CCCCCcccccccccccccccccCccccccCccccCCCccEEEecCCcCcCcCCcccCCCCC
Q 007237 13 NMLKVMKLSHSENLIKTP-DFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMEC 91 (611)
Q Consensus 13 ~~L~~L~Ls~~~~l~~~~-~~~~~~~L~~L~L~~c~~l~~i~~s~~~l~~L~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~ 91 (611)
++|++|+|++|......+ .|..+++|++|+|++| .++.+++. .+..+++|++|+|++|.+. .+|.. .+++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~-----~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~ 122 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHN-RIRSLDFH-----VFLFNQDLEYLDVSHNRLQ-NISCC--PMAS 122 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSC-CCCEECTT-----TTTTCTTCCEEECTTSCCC-EECSC--CCTT
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCC-CCCcCCHH-----HhCCCCCCCEEECCCCcCC-ccCcc--cccc
Confidence 789999999987544333 6889999999999987 66666442 1233788999999998866 56666 7899
Q ss_pred CcEEEcCCCCccccC--ccccCCCCCcEEeccCCCCCCCCcccCCCCCCC--CEEEecCCCC--CcccccccCCCC----
Q 007237 92 LQELLLDGTDIKELP--LSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCL--RNLKLSGCSK--LKKFPQIVTTME---- 161 (611)
Q Consensus 92 L~~L~L~~~~i~~lp--~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L--~~L~L~~~~~--l~~~p~~~~~l~---- 161 (611)
|++|++++|.++.+| ..++++++|++|++++|..... .+..+++| +.|++++|.. ....|..+..+.
T Consensus 123 L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l 199 (562)
T 3a79_B 123 LRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVL 199 (562)
T ss_dssp CSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEE
T ss_pred CCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceE
Confidence 999999999998765 6888999999999988654321 24445555 8888888766 333333332221
Q ss_pred -----------------------------------------------------------------------------CCC
Q 007237 162 -----------------------------------------------------------------------------DLS 164 (611)
Q Consensus 162 -----------------------------------------------------------------------------~L~ 164 (611)
+|+
T Consensus 200 ~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~ 279 (562)
T 3a79_B 200 HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVE 279 (562)
T ss_dssp EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEE
T ss_pred EEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhccccc
Confidence 455
Q ss_pred EEeecCccCC-CcCccc-----CCCCC--------------------------CCEEeccCCcCCcccccCccCCCCCCE
Q 007237 165 ELNLDGTSIT-EVPSSI-----ELLPG--------------------------LELLNLNDCKNFARVPSSINGLKSLKT 212 (611)
Q Consensus 165 ~L~L~~~~i~-~l~~~l-----~~l~~--------------------------L~~L~L~~~~~~~~lp~~i~~l~~L~~ 212 (611)
+|++++|.++ .+|..+ ..++. |+.|++++|...... ....+++|++
T Consensus 280 ~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~ 357 (562)
T 3a79_B 280 YLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTF 357 (562)
T ss_dssp EEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCE
T ss_pred EEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceE
Confidence 5555555555 455443 23322 444444444321110 0167899999
Q ss_pred EEecCCCCCcccCcccCCCCCccEEeccCCCcccCC---ccccccCCCcEEEcCCCCCCCCCCcccccccccccCCccch
Q 007237 213 LNLSGCCKLENVPDTLGQVESLEELDISETAVRRPP---SSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCL 289 (611)
Q Consensus 213 L~l~~c~~l~~~p~~l~~l~~L~~L~l~~~~~~~~~---~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~~ 289 (611)
|++++|...+..|..++.+++|+.|++++|.+..++ ..+..+++|++|++++|......
T Consensus 358 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~------------------ 419 (562)
T 3a79_B 358 LNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHA------------------ 419 (562)
T ss_dssp EECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCC------------------
T ss_pred EECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCcc------------------
Confidence 999999888888999999999999999999999765 45788999999999998732110
Q ss_pred hhccCCCCCCCCCCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCCcCCcccccCCCcCeeecccccccCcCCCC-
Q 007237 290 VALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKRLQFLPQL- 368 (611)
Q Consensus 290 ~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~l- 368 (611)
....+..+++|+.|++++|.+. +.+|..+. ++|+.|++++|+++.+|..+..+++|++|++++|+ ++.+|.-
T Consensus 420 ---~~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~-l~~l~~~~ 492 (562)
T 3a79_B 420 ---YDRTCAWAESILVLNLSSNMLT-GSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQ-LKSVPDGV 492 (562)
T ss_dssp ---SSCCCCCCTTCCEEECCSSCCC-GGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSC-CCCCCTTS
T ss_pred ---ChhhhcCcccCCEEECCCCCCC-cchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCC-CCCCCHHH
Confidence 1112677899999999999986 44555443 79999999999999999998899999999999986 5566542
Q ss_pred ---CCCcceeeecCC
Q 007237 369 ---PPNIIFVKVNGC 380 (611)
Q Consensus 369 ---p~~L~~L~i~~C 380 (611)
.++|+.|+++++
T Consensus 493 ~~~l~~L~~L~l~~N 507 (562)
T 3a79_B 493 FDRLTSLQYIWLHDN 507 (562)
T ss_dssp TTTCTTCCCEECCSC
T ss_pred HhcCCCCCEEEecCC
Confidence 234444554443
No 29
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.96 E-value=4.8e-28 Score=250.09 Aligned_cols=307 Identities=18% Similarity=0.257 Sum_probs=248.2
Q ss_pred CcCCCCCCCcccccccccccccccccCccccccCccccCCCccEEEecCCcCcCcCCcccCCCCCCcEEEcCCCCccccC
Q 007237 27 IKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELP 106 (611)
Q Consensus 27 ~~~~~~~~~~~L~~L~L~~c~~l~~i~~s~~~l~~L~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~L~~~~i~~lp 106 (611)
.....+..+++|+.|+++++ .+..++ .+..+++|++|++++|.+... +. +..+++|++|+++++.++.++
T Consensus 35 ~~~~~~~~l~~L~~L~l~~~-~i~~~~-------~~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~~~ 104 (347)
T 4fmz_A 35 TDVVTQEELESITKLVVAGE-KVASIQ-------GIEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITDIS 104 (347)
T ss_dssp TSEECHHHHTTCSEEECCSS-CCCCCT-------TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCG
T ss_pred CCcccchhcccccEEEEeCC-ccccch-------hhhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccCch
Confidence 34455678899999999997 555554 244588999999999976653 44 899999999999999999986
Q ss_pred ccccCCCCCcEEeccCCCCCCCCcccCCCCCCCCEEEecCCCCCcccccccCCCCCCCEEeecCccCCCcCcccCCCCCC
Q 007237 107 LSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGL 186 (611)
Q Consensus 107 ~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~l~~~l~~l~~L 186 (611)
.+..+++|++|++++|. +..++. +..+++|+.|++++|......+. +..+++|++|+++++.+..++. +..+++|
T Consensus 105 -~~~~l~~L~~L~l~~n~-i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L 179 (347)
T 4fmz_A 105 -ALQNLTNLRELYLNEDN-ISDISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP-IANLTDL 179 (347)
T ss_dssp -GGTTCTTCSEEECTTSC-CCCCGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTC
T ss_pred -HHcCCCcCCEEECcCCc-ccCchh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh-hccCCCC
Confidence 68999999999999965 667776 78899999999999987776655 8899999999999999988776 7889999
Q ss_pred CEEeccCCcCCcccccCccCCCCCCEEEecCCCCCcccCcccCCCCCccEEeccCCCcccCCccccccCCCcEEEcCCCC
Q 007237 187 ELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCN 266 (611)
Q Consensus 187 ~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~c~~l~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~c~ 266 (611)
+.|++++|.... ++. +..+++|+.|++++|......+ +..+++|+.|++++|.+..++. +..+++|++|++++|.
T Consensus 180 ~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~ 254 (347)
T 4fmz_A 180 YSLSLNYNQIED-ISP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQ 254 (347)
T ss_dssp SEEECTTSCCCC-CGG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC
T ss_pred CEEEccCCcccc-ccc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCc
Confidence 999999987654 333 7889999999999986654433 7889999999999999998877 8889999999999986
Q ss_pred CCCCCCcccccccccccCCccchhhccCCCCCCCCCCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCCc-CCccc
Q 007237 267 GPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVT-LPASI 345 (611)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~-lp~~i 345 (611)
.. .++.+..+++|+.|++++|.+.+ + ..+..+++|+.|++++|.+.. .|..+
T Consensus 255 l~------------------------~~~~~~~l~~L~~L~l~~n~l~~--~-~~~~~l~~L~~L~L~~n~l~~~~~~~l 307 (347)
T 4fmz_A 255 IS------------------------DINAVKDLTKLKMLNVGSNQISD--I-SVLNNLSQLNSLFLNNNQLGNEDMEVI 307 (347)
T ss_dssp CC------------------------CCGGGTTCTTCCEEECCSSCCCC--C-GGGGGCTTCSEEECCSSCCCGGGHHHH
T ss_pred cC------------------------CChhHhcCCCcCEEEccCCccCC--C-hhhcCCCCCCEEECcCCcCCCcChhHh
Confidence 32 12346788999999999999864 3 457889999999999999984 45678
Q ss_pred ccCCCcCeeecccccccCcCCC--CCCCcceeeecCCC
Q 007237 346 NSLLNLKELEMEDCKRLQFLPQ--LPPNIIFVKVNGCS 381 (611)
Q Consensus 346 ~~l~~L~~L~L~~c~~L~~lp~--lp~~L~~L~i~~C~ 381 (611)
..+++|++|++++|+ ++.++. -.++|++|++++|+
T Consensus 308 ~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 308 GGLTNLTTLFLSQNH-ITDIRPLASLSKMDSADFANQV 344 (347)
T ss_dssp HTCTTCSEEECCSSS-CCCCGGGGGCTTCSEESSSCC-
T ss_pred hccccCCEEEccCCc-cccccChhhhhccceeehhhhc
Confidence 999999999999998 444432 23456666665553
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.96 E-value=9e-28 Score=256.80 Aligned_cols=306 Identities=18% Similarity=0.160 Sum_probs=247.3
Q ss_pred cccCCCcccEEEccCCCCCCcCCCCCCCcccccccccccccccccCccccccCccccCCCccEEEecCCcCcCcCCcccC
Q 007237 8 FQQHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVG 87 (611)
Q Consensus 8 ~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~L~~L~L~~c~~l~~i~~s~~~l~~L~~l~~L~~L~Ls~~~~~~~lp~~l~ 87 (611)
.+..+++|++|++++|. +..+|.+..+++|++|++++| .++.++ +..+++|++|++++|.+.+. + ++
T Consensus 37 ~~~~l~~L~~L~Ls~n~-l~~~~~l~~l~~L~~L~Ls~n-~l~~~~--------~~~l~~L~~L~Ls~N~l~~~-~--~~ 103 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSS-ITDMTGIEKLTGLTKLICTSN-NITTLD--------LSQNTNLTYLACDSNKLTNL-D--VT 103 (457)
T ss_dssp EHHHHTTCCEEECCSSC-CCCCTTGGGCTTCSEEECCSS-CCSCCC--------CTTCTTCSEEECCSSCCSCC-C--CT
T ss_pred ChhHcCCCCEEEccCCC-cccChhhcccCCCCEEEccCC-cCCeEc--------cccCCCCCEEECcCCCCcee-e--cC
Confidence 45568999999999985 456688999999999999998 566653 33478999999999987763 3 88
Q ss_pred CCCCCcEEEcCCCCccccCccccCCCCCcEEeccCCCCCCCCcccCCCCCCCCEEEecCCCCCcccccccCCCCCCCEEe
Q 007237 88 SMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELN 167 (611)
Q Consensus 88 ~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~~~~l~~L~~L~ 167 (611)
.+++|++|++++|.++.+| ++.+++|++|++++|. ++.++ ++.+++|+.|++++|..++.+ .+..+++|++|+
T Consensus 104 ~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~-l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ 176 (457)
T 3bz5_A 104 PLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNT-LTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLD 176 (457)
T ss_dssp TCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSC-CSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEE
T ss_pred CCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCc-cceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEE
Confidence 9999999999999999986 8999999999999965 55565 788999999999999877776 478899999999
Q ss_pred ecCccCCCcCcccCCCCCCCEEeccCCcCCcccccCccCCCCCCEEEecCCCCCcccCcccCCCCCccEEeccCCCcccC
Q 007237 168 LDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRP 247 (611)
Q Consensus 168 L~~~~i~~l~~~l~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~c~~l~~~p~~l~~l~~L~~L~l~~~~~~~~ 247 (611)
+++|.++.+| ++.+++|+.|++++|...+. .+..+++|+.|++++|...+ +| ++.+++|+.|++++|.+..+
T Consensus 177 ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~ 248 (457)
T 3bz5_A 177 CSFNKITELD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTEL 248 (457)
T ss_dssp CCSSCCCCCC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC
T ss_pred CCCCccceec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCc
Confidence 9999999987 88999999999999887654 37889999999999987655 66 88999999999999999988
Q ss_pred CccccccCCCcEEEcCCCCCCCCCCcccccccccccCCccchhhccCCCCCCCCCCCEEeccCCCCCCCCCCC-------
Q 007237 248 PSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPS------- 320 (611)
Q Consensus 248 ~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~~~------- 320 (611)
| ...+++|+.|+++++.... +....+.....+| +..+++|+.|++++|... +.+|.
T Consensus 249 ~--~~~l~~L~~L~l~~n~L~~-------------L~l~~n~~~~~~~-~~~l~~L~~L~Ls~n~~l-~~l~~~~~~L~~ 311 (457)
T 3bz5_A 249 D--VSTLSKLTTLHCIQTDLLE-------------IDLTHNTQLIYFQ-AEGCRKIKELDVTHNTQL-YLLDCQAAGITE 311 (457)
T ss_dssp C--CTTCTTCCEEECTTCCCSC-------------CCCTTCTTCCEEE-CTTCTTCCCCCCTTCTTC-CEEECTTCCCSC
T ss_pred C--HHHCCCCCEEeccCCCCCE-------------EECCCCccCCccc-ccccccCCEEECCCCccc-ceeccCCCcceE
Confidence 6 4678889998888765211 0111111111222 467789999999998753 22332
Q ss_pred -CCCCCCCCCEEEcCCCCCCcCCcccccCCCcCeeeccccc
Q 007237 321 -DIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCK 360 (611)
Q Consensus 321 -~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~ 360 (611)
.+..+++|+.|++++|+++.++ +..+++|+.|++++++
T Consensus 312 L~l~~~~~L~~L~L~~N~l~~l~--l~~l~~L~~L~l~~N~ 350 (457)
T 3bz5_A 312 LDLSQNPKLVYLYLNNTELTELD--VSHNTKLKSLSCVNAH 350 (457)
T ss_dssp CCCTTCTTCCEEECTTCCCSCCC--CTTCTTCSEEECCSSC
T ss_pred echhhcccCCEEECCCCcccccc--cccCCcCcEEECCCCC
Confidence 3567788999999999998874 8889999999998876
No 31
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.96 E-value=3.7e-27 Score=247.55 Aligned_cols=304 Identities=17% Similarity=0.150 Sum_probs=236.0
Q ss_pred CCcccccccccccccccccCccccccCccccCCCccEEEecCCcCcCcCCcccCCCCCCcEEEcCCCCccccC-ccccCC
Q 007237 34 EAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELP-LSIEHL 112 (611)
Q Consensus 34 ~~~~L~~L~L~~c~~l~~i~~s~~~l~~L~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~L~~~~i~~lp-~~~~~l 112 (611)
.+++|+.|+++++ .++.+|..+. ..+++|++|++++|.+.+..+..+..+++|++|+++++.+..++ ..++.+
T Consensus 43 ~l~~l~~l~l~~~-~l~~l~~~~~-----~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 116 (390)
T 3o6n_A 43 TLNNQKIVTFKNS-TMRKLPAALL-----DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV 116 (390)
T ss_dssp GGCCCSEEEEESC-EESEECTHHH-----HHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred ccCCceEEEecCC-chhhCChhHh-----cccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCC
Confidence 4688899999886 6777776532 23788999999998887777778899999999999999998775 457889
Q ss_pred CCCcEEeccCCCCCCCCccc-CCCCCCCCEEEecCCCCCcccccccCCCCCCCEEeecCccCCCcCcccCCCCCCCEEec
Q 007237 113 FGLVQLTLNDCKNLSSLPVA-ISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNL 191 (611)
Q Consensus 113 ~~L~~L~L~~c~~l~~lp~~-l~~l~~L~~L~L~~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~l~~~l~~l~~L~~L~L 191 (611)
++|++|++++|. +..+|.. +.++++|++|++++|......+..+..+++|++|++++|.++.++ ++.+++|+.|++
T Consensus 117 ~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l 193 (390)
T 3o6n_A 117 PLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANV 193 (390)
T ss_dssp TTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEEC
T ss_pred CCCCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccccceeec
Confidence 999999999864 6677765 478899999999998777666777888999999999999988775 566789999999
Q ss_pred cCCcCCcccccCccCCCCCCEEEecCCCCCcccCcccCCCCCccEEeccCCCcccCCccccccCCCcEEEcCCCCCCCCC
Q 007237 192 NDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSS 271 (611)
Q Consensus 192 ~~~~~~~~lp~~i~~l~~L~~L~l~~c~~l~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~ 271 (611)
++|.... +...++|+.|++++|.... +|.. ..++|+.|++++|.+... ..+..+++|++|++++|....
T Consensus 194 ~~n~l~~-----~~~~~~L~~L~l~~n~l~~-~~~~--~~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~-- 262 (390)
T 3o6n_A 194 SYNLLST-----LAIPIAVEELDASHNSINV-VRGP--VNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEK-- 262 (390)
T ss_dssp CSSCCSE-----EECCSSCSEEECCSSCCCE-EECC--CCSSCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCE--
T ss_pred ccccccc-----cCCCCcceEEECCCCeeee-cccc--ccccccEEECCCCCCccc-HHHcCCCCccEEECCCCcCCC--
Confidence 9876543 2345689999999876543 3332 357899999999988876 467889999999999886221
Q ss_pred CcccccccccccCCccchhhccCCCCCCCCCCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCCcCCcccccCCCc
Q 007237 272 ASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNL 351 (611)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L 351 (611)
.....+..+++|+.|++++|++.. ++..+..+++|+.|++++|++..+|..+..+++|
T Consensus 263 --------------------~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L 320 (390)
T 3o6n_A 263 --------------------IMYHPFVKMQRLERLYISNNRLVA--LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRL 320 (390)
T ss_dssp --------------------EESGGGTTCSSCCEEECCSSCCCE--EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTC
T ss_pred --------------------cChhHccccccCCEEECCCCcCcc--cCcccCCCCCCCEEECCCCcceecCccccccCcC
Confidence 112236778899999999999853 6777788999999999999999999889999999
Q ss_pred CeeecccccccCcCC-CCCCCcceeeecCC
Q 007237 352 KELEMEDCKRLQFLP-QLPPNIIFVKVNGC 380 (611)
Q Consensus 352 ~~L~L~~c~~L~~lp-~lp~~L~~L~i~~C 380 (611)
++|++++|+ ++.++ ...++|+.|+++++
T Consensus 321 ~~L~L~~N~-i~~~~~~~~~~L~~L~l~~N 349 (390)
T 3o6n_A 321 ENLYLDHNS-IVTLKLSTHHTLKNLTLSHN 349 (390)
T ss_dssp SEEECCSSC-CCCCCCCTTCCCSEEECCSS
T ss_pred CEEECCCCc-cceeCchhhccCCEEEcCCC
Confidence 999999987 44443 22344555555443
No 32
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.95 E-value=2.5e-27 Score=248.84 Aligned_cols=304 Identities=19% Similarity=0.205 Sum_probs=252.1
Q ss_pred CCCcccEEEccCCCCCCcCCC--CCCCcccccccccccccccccCccccccCccccCCCccEEEecCCcCcCcCCcccCC
Q 007237 11 HLNMLKVMKLSHSENLIKTPD--FTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGS 88 (611)
Q Consensus 11 ~l~~L~~L~Ls~~~~l~~~~~--~~~~~~L~~L~L~~c~~l~~i~~s~~~l~~L~~l~~L~~L~Ls~~~~~~~lp~~l~~ 88 (611)
.++++++|+++++. +..+|. +..+++|++|++++| .++.+++. .+..+++|++|++++|.+.+..|..++.
T Consensus 43 ~l~~l~~l~l~~~~-l~~l~~~~~~~l~~L~~L~L~~n-~i~~~~~~-----~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 115 (390)
T 3o6n_A 43 TLNNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDL-QIEEIDTY-----AFAYAHTIQKLYMGFNAIRYLPPHVFQN 115 (390)
T ss_dssp GGCCCSEEEEESCE-ESEECTHHHHHCCCCSEEECTTS-CCCEECTT-----TTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred ccCCceEEEecCCc-hhhCChhHhcccccCcEEECCCC-cccccChh-----hccCCCCcCEEECCCCCCCcCCHHHhcC
Confidence 46899999999985 555665 788999999999998 56666642 2334889999999999998888889999
Q ss_pred CCCCcEEEcCCCCccccCcc-ccCCCCCcEEeccCCCCCCCCcccCCCCCCCCEEEecCCCCCcccccccCCCCCCCEEe
Q 007237 89 MECLQELLLDGTDIKELPLS-IEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELN 167 (611)
Q Consensus 89 l~~L~~L~L~~~~i~~lp~~-~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~~~~l~~L~~L~ 167 (611)
+++|++|++++|.++.+|.. +..+++|++|++++|......|..+..+++|++|++++|..... .++.+++|++|+
T Consensus 116 l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~ 192 (390)
T 3o6n_A 116 VPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHAN 192 (390)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEE
T ss_pred CCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceee
Confidence 99999999999999999987 48999999999999775555566688999999999999865443 356789999999
Q ss_pred ecCccCCCcCcccCCCCCCCEEeccCCcCCcccccCccCCCCCCEEEecCCCCCcccCcccCCCCCccEEeccCCCcccC
Q 007237 168 LDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRP 247 (611)
Q Consensus 168 L~~~~i~~l~~~l~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~c~~l~~~p~~l~~l~~L~~L~l~~~~~~~~ 247 (611)
+++|.++.++ ..++|+.|++++|..... |.. ..++|+.|++++|..... ..++.+++|+.|++++|.+..+
T Consensus 193 l~~n~l~~~~----~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~ 263 (390)
T 3o6n_A 193 VSYNLLSTLA----IPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKI 263 (390)
T ss_dssp CCSSCCSEEE----CCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEE
T ss_pred cccccccccC----CCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCc
Confidence 9999887653 346899999999876543 443 357999999999876543 4688999999999999999865
Q ss_pred -CccccccCCCcEEEcCCCCCCCCCCcccccccccccCCccchhhccCCCCCCCCCCCEEeccCCCCCCCCCCCCCCCCC
Q 007237 248 -PSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLH 326 (611)
Q Consensus 248 -~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~ 326 (611)
|..+..+++|++|++++|.... ....+..+++|+.|++++|.+. .+|..+..++
T Consensus 264 ~~~~~~~l~~L~~L~L~~n~l~~-----------------------~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~l~ 318 (390)
T 3o6n_A 264 MYHPFVKMQRLERLYISNNRLVA-----------------------LNLYGQPIPTLKVLDLSHNHLL--HVERNQPQFD 318 (390)
T ss_dssp ESGGGTTCSSCCEEECCSSCCCE-----------------------EECSSSCCTTCCEEECCSSCCC--CCGGGHHHHT
T ss_pred ChhHccccccCCEEECCCCcCcc-----------------------cCcccCCCCCCCEEECCCCcce--ecCccccccC
Confidence 6778889999999999987321 1112457889999999999995 4788888999
Q ss_pred CCCEEEcCCCCCCcCCcccccCCCcCeeeccccc
Q 007237 327 SLNELYLSKNNFVTLPASINSLLNLKELEMEDCK 360 (611)
Q Consensus 327 ~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~ 360 (611)
+|+.|++++|.++.+| +..+++|+.|++++|+
T Consensus 319 ~L~~L~L~~N~i~~~~--~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 319 RLENLYLDHNSIVTLK--LSTHHTLKNLTLSHND 350 (390)
T ss_dssp TCSEEECCSSCCCCCC--CCTTCCCSEEECCSSC
T ss_pred cCCEEECCCCccceeC--chhhccCCEEEcCCCC
Confidence 9999999999999887 7889999999999987
No 33
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.95 E-value=5.4e-27 Score=253.06 Aligned_cols=298 Identities=19% Similarity=0.211 Sum_probs=248.5
Q ss_pred CcccEEEccCCCCCCcCC-CCCCCcccccccccccccccccCccccccCccccCCCccEEEecCCcCcCcCCcccCCCCC
Q 007237 13 NMLKVMKLSHSENLIKTP-DFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMEC 91 (611)
Q Consensus 13 ~~L~~L~Ls~~~~l~~~~-~~~~~~~L~~L~L~~c~~l~~i~~s~~~l~~L~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~ 91 (611)
++++.|+|++|+.....+ .|..+++|++|+|++| .++.+++. .+..+++|++|+|++|.+....+..+.++++
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~-----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 105 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN-IVSAVEPG-----AFNNLFNLRTLGLRSNRLKLIPLGVFTGLSN 105 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTT-----TTTTCTTCCEEECCSSCCCSCCTTSSTTCTT
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCC-ccCEeChh-----hhhCCccCCEEECCCCcCCccCcccccCCCC
Confidence 589999999997544433 6999999999999998 56665332 2334789999999999887766677899999
Q ss_pred CcEEEcCCCCcccc-CccccCCCCCcEEeccCCCCCCCCcccCCCCCCCCEEEecCCCCCcccccccCCCCCCCEEeecC
Q 007237 92 LQELLLDGTDIKEL-PLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDG 170 (611)
Q Consensus 92 L~~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~~~~l~~L~~L~L~~ 170 (611)
|++|++++|.+..+ |..+..+++|++|++++|......+..+..+++|+.|++++|......+..+..+++|+.|++.+
T Consensus 106 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 185 (477)
T 2id5_A 106 LTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRH 185 (477)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEES
T ss_pred CCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCC
Confidence 99999999999976 56889999999999999775555566789999999999999876665566789999999999999
Q ss_pred ccCCCcCc-ccCCCCCCCEEeccCCcCCcccccCccCCCCCCEEEecCCCCCcccC-cccCCCCCccEEeccCCCcccCC
Q 007237 171 TSITEVPS-SIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVP-DTLGQVESLEELDISETAVRRPP 248 (611)
Q Consensus 171 ~~i~~l~~-~l~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~c~~l~~~p-~~l~~l~~L~~L~l~~~~~~~~~ 248 (611)
|.+..++. .+..+++|+.|++++|...+.+|..+....+|++|++++|... .+| ..+..+++|+.|++++|.+..++
T Consensus 186 n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 264 (477)
T 2id5_A 186 LNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIE 264 (477)
T ss_dssp CCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC-SCCHHHHTTCTTCCEEECCSSCCCEEC
T ss_pred CcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccc-ccCHHHhcCccccCeeECCCCcCCccC
Confidence 99997765 5889999999999999999999988877889999999998655 455 56889999999999999999765
Q ss_pred c-cccccCCCcEEEcCCCCCCCCCCcccccccccccCCccchhhccCCCCCCCCCCCEEeccCCCCCCCCCCCCCCCCCC
Q 007237 249 S-SVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHS 327 (611)
Q Consensus 249 ~-~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~ 327 (611)
. .+..+++|+.|++++|.... .....+..+++|+.|++++|.+. ...+..+..+++
T Consensus 265 ~~~~~~l~~L~~L~L~~n~l~~----------------------~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~ 321 (477)
T 2id5_A 265 GSMLHELLRLQEIQLVGGQLAV----------------------VEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGN 321 (477)
T ss_dssp TTSCTTCTTCCEEECCSSCCSE----------------------ECTTTBTTCTTCCEEECCSSCCS-CCCGGGBSCGGG
T ss_pred hhhccccccCCEEECCCCccce----------------------ECHHHhcCcccCCEEECCCCcCc-eeCHhHcCCCcc
Confidence 4 57789999999999986321 12234788999999999999996 334456789999
Q ss_pred CCEEEcCCCCCCc
Q 007237 328 LNELYLSKNNFVT 340 (611)
Q Consensus 328 L~~L~L~~n~l~~ 340 (611)
|+.|+|++|.+..
T Consensus 322 L~~L~l~~N~l~c 334 (477)
T 2id5_A 322 LETLILDSNPLAC 334 (477)
T ss_dssp CCEEECCSSCEEC
T ss_pred cCEEEccCCCccC
Confidence 9999999998773
No 34
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.95 E-value=2.4e-26 Score=245.51 Aligned_cols=334 Identities=20% Similarity=0.216 Sum_probs=181.4
Q ss_pred ccccCCCcccEEEccCCCCCCcCC-CCCCCcccccccccccccccccCccccccCccc----------------------
Q 007237 7 CFQQHLNMLKVMKLSHSENLIKTP-DFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLI---------------------- 63 (611)
Q Consensus 7 ~~~~~l~~L~~L~Ls~~~~l~~~~-~~~~~~~L~~L~L~~c~~l~~i~~s~~~l~~L~---------------------- 63 (611)
++++ .++|++|+++++.. ..+| .++.+++|++|++++|...+.+|.+++.+..+.
T Consensus 6 ~~~~-~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l 83 (454)
T 1jl5_A 6 RNVS-NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGL 83 (454)
T ss_dssp ------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCC
T ss_pred cccc-cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcc
Confidence 3443 58999999999976 6676 599999999999999876668888877655441
Q ss_pred -----cCCCccEEEecCCcCcCcCCcccCCCCCCcEEEcCCCCccccCccccCCCCCcEEeccCCCCCCCCcccCCCCCC
Q 007237 64 -----FVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQC 138 (611)
Q Consensus 64 -----~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~ 138 (611)
..++|++|++++|.+.+ +|.. ..+|++|++++|.++.+|.. .++|++|++++|. ++.+| .++++++
T Consensus 84 ~~lp~~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~-l~~lp-~~~~l~~ 154 (454)
T 1jl5_A 84 SSLPELPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQ-LEKLP-ELQNSSF 154 (454)
T ss_dssp SCCCSCCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSC-CSSCC-CCTTCTT
T ss_pred ccCCCCcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcccCC---CCCCCEEECcCCC-CCCCc-ccCCCCC
Confidence 11345555555444433 3322 24555555555555554432 1466666666643 44466 3666667
Q ss_pred CCEEEecCCCCCcccccccCCCCCCCEEeecCccCCCcCcccCCCCCCCEEeccCCcCCcccccCccCCCCCCEEEecCC
Q 007237 139 LRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGC 218 (611)
Q Consensus 139 L~~L~L~~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~l~~~l~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~c 218 (611)
|++|++++|.. ..+|... .+|++|++++|.++.+| .++.+++|+.|++++|...+ +|.. .++|++|++++|
T Consensus 155 L~~L~l~~N~l-~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n 225 (454)
T 1jl5_A 155 LKIIDVDNNSL-KKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNN 225 (454)
T ss_dssp CCEEECCSSCC-SCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSS
T ss_pred CCEEECCCCcC-cccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCC
Confidence 77777766543 3344332 46666777666666665 46666777777776665443 3332 246677777766
Q ss_pred CCCcccCcccCCCCCccEEeccCCCcccCCccccccCCCcEEEcCCCCCCCCCCcccccccccccCCccchhhccCCCCC
Q 007237 219 CKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLS 298 (611)
Q Consensus 219 ~~l~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 298 (611)
... .+|. ++.+++|+.|++++|.+..+|.. +++|++|++++|......... ..+..+....+.... ++.+
T Consensus 226 ~l~-~lp~-~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~l~~l~~~~---~~L~~L~ls~N~l~~-l~~~- 295 (454)
T 1jl5_A 226 ILE-ELPE-LQNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNYLTDLPELP---QSLTFLDVSENIFSG-LSEL- 295 (454)
T ss_dssp CCS-SCCC-CTTCTTCCEEECCSSCCSSCCSC---CTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSE-ESCC-
T ss_pred cCC-cccc-cCCCCCCCEEECCCCcCCccccc---ccccCEEECCCCcccccCccc---CcCCEEECcCCccCc-ccCc-
Confidence 433 5553 66677777777777777666542 366777777766532211100 111111111111110 1111
Q ss_pred CCCCCCEEeccCCCCCCCCCCCCCCCC-CCCCEEEcCCCCCCcCCcccccCCCcCeeecccccccCcCCCCCCCcceeee
Q 007237 299 GLRSLTKLDLSDCGLGEGAIPSDIGNL-HSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKRLQFLPQLPPNIIFVKV 377 (611)
Q Consensus 299 ~l~~L~~L~Ls~~~l~~~~~~~~l~~l-~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp~~L~~L~i 377 (611)
.++|+.|++++|.+.. ++ .+ ++|+.|++++|+++.+|.. +++|++|++++|. ++.+|..+++|+.|++
T Consensus 296 -~~~L~~L~l~~N~l~~--i~----~~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N~-l~~lp~~l~~L~~L~L 364 (454)
T 1jl5_A 296 -PPNLYYLNASSNEIRS--LC----DLPPSLEELNVSNNKLIELPAL---PPRLERLIASFNH-LAEVPELPQNLKQLHV 364 (454)
T ss_dssp -CTTCCEEECCSSCCSE--EC----CCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC-CSCCCCCCTTCCEEEC
T ss_pred -CCcCCEEECcCCcCCc--cc----CCcCcCCEEECCCCcccccccc---CCcCCEEECCCCc-cccccchhhhccEEEC
Confidence 1467777777776642 22 22 5888888888888888764 5788899998885 6778887888888888
Q ss_pred cCCC
Q 007237 378 NGCS 381 (611)
Q Consensus 378 ~~C~ 381 (611)
+++.
T Consensus 365 ~~N~ 368 (454)
T 1jl5_A 365 EYNP 368 (454)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 8764
No 35
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=1.1e-26 Score=257.46 Aligned_cols=305 Identities=17% Similarity=0.153 Sum_probs=241.8
Q ss_pred CCcccccccccccccccccCccccccCccccCCCccEEEecCCcCcCcCCcccCCCCCCcEEEcCCCCccccCc-cccCC
Q 007237 34 EAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPL-SIEHL 112 (611)
Q Consensus 34 ~~~~L~~L~L~~c~~l~~i~~s~~~l~~L~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~L~~~~i~~lp~-~~~~l 112 (611)
.+++++.|+++++ .++.+|+.+. ..+++|++|+|++|.+.+..|..++.+++|++|++++|.+..+|. .++.+
T Consensus 49 ~l~~l~~l~l~~~-~l~~lp~~~~-----~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 122 (597)
T 3oja_B 49 TLNNQKIVTFKNS-TMRKLPAALL-----DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV 122 (597)
T ss_dssp GGCCCSEEEESSC-EESEECTHHH-----HHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred cCCCceEEEeeCC-CCCCcCHHHH-----ccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCC
Confidence 4678889999886 6777776542 237889999999998888778889999999999999999998765 46899
Q ss_pred CCCcEEeccCCCCCCCCccc-CCCCCCCCEEEecCCCCCcccccccCCCCCCCEEeecCccCCCcCcccCCCCCCCEEec
Q 007237 113 FGLVQLTLNDCKNLSSLPVA-ISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNL 191 (611)
Q Consensus 113 ~~L~~L~L~~c~~l~~lp~~-l~~l~~L~~L~L~~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~l~~~l~~l~~L~~L~L 191 (611)
++|++|++++|. +..+|.. ++++++|++|++++|......|..++.+++|++|++++|.++.++ ++.+++|+.|++
T Consensus 123 ~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l 199 (597)
T 3oja_B 123 PLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANV 199 (597)
T ss_dssp TTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEEC
T ss_pred CCCCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhc
Confidence 999999999865 6677765 588999999999998877777778899999999999999998875 566889999999
Q ss_pred cCCcCCcccccCccCCCCCCEEEecCCCCCcccCcccCCCCCccEEeccCCCcccCCccccccCCCcEEEcCCCCCCCCC
Q 007237 192 NDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSS 271 (611)
Q Consensus 192 ~~~~~~~~lp~~i~~l~~L~~L~l~~c~~l~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~ 271 (611)
++|...+ +...++|+.|++++|.... ++..+ .++|+.|++++|.+... ..+..+++|+.|++++|....
T Consensus 200 ~~n~l~~-----l~~~~~L~~L~ls~n~l~~-~~~~~--~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~-- 268 (597)
T 3oja_B 200 SYNLLST-----LAIPIAVEELDASHNSINV-VRGPV--NVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEK-- 268 (597)
T ss_dssp CSSCCSE-----EECCTTCSEEECCSSCCCE-EECSC--CSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCE--
T ss_pred ccCcccc-----ccCCchhheeeccCCcccc-ccccc--CCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCC--
Confidence 9876543 3345689999999986543 33222 36899999999998875 678889999999999986221
Q ss_pred CcccccccccccCCccchhhccCCCCCCCCCCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCCcCCcccccCCCc
Q 007237 272 ASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNL 351 (611)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L 351 (611)
.....+..+++|+.|++++|.+.. +|..+..+++|+.|+|++|.+..+|..+..+++|
T Consensus 269 --------------------~~~~~~~~l~~L~~L~Ls~N~l~~--l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L 326 (597)
T 3oja_B 269 --------------------IMYHPFVKMQRLERLYISNNRLVA--LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRL 326 (597)
T ss_dssp --------------------EESGGGTTCSSCCEEECTTSCCCE--EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTC
T ss_pred --------------------CCHHHhcCccCCCEEECCCCCCCC--CCcccccCCCCcEEECCCCCCCccCcccccCCCC
Confidence 112237788999999999999853 7777888999999999999999999999999999
Q ss_pred CeeecccccccCcCC-CCCCCcceeeecCCC
Q 007237 352 KELEMEDCKRLQFLP-QLPPNIIFVKVNGCS 381 (611)
Q Consensus 352 ~~L~L~~c~~L~~lp-~lp~~L~~L~i~~C~ 381 (611)
++|+|++|+ +..++ ...++|+.|++++++
T Consensus 327 ~~L~L~~N~-l~~~~~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 327 ENLYLDHNS-IVTLKLSTHHTLKNLTLSHND 356 (597)
T ss_dssp SEEECCSSC-CCCCCCCTTCCCSEEECCSSC
T ss_pred CEEECCCCC-CCCcChhhcCCCCEEEeeCCC
Confidence 999999987 33332 233455555555543
No 36
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=1.5e-26 Score=256.38 Aligned_cols=304 Identities=20% Similarity=0.221 Sum_probs=251.6
Q ss_pred CCCcccEEEccCCCCCCcCCC--CCCCcccccccccccccccccCccccccCccccCCCccEEEecCCcCcCcCCcccCC
Q 007237 11 HLNMLKVMKLSHSENLIKTPD--FTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGS 88 (611)
Q Consensus 11 ~l~~L~~L~Ls~~~~l~~~~~--~~~~~~L~~L~L~~c~~l~~i~~s~~~l~~L~~l~~L~~L~Ls~~~~~~~lp~~l~~ 88 (611)
.+++++.++++++. +..+|. +..+++|++|+|++| .++.+++. .+..+++|++|+|++|.+.+..|..++.
T Consensus 49 ~l~~l~~l~l~~~~-l~~lp~~~~~~l~~L~~L~L~~n-~l~~~~~~-----~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 121 (597)
T 3oja_B 49 TLNNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDL-QIEEIDTY-----AFAYAHTIQKLYMGFNAIRYLPPHVFQN 121 (597)
T ss_dssp GGCCCSEEEESSCE-ESEECTHHHHHCCCCSEEECTTS-CCCEECTT-----TTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred cCCCceEEEeeCCC-CCCcCHHHHccCCCCcEEECCCC-CCCCCChH-----HhcCCCCCCEEECCCCcCCCCCHHHHcC
Confidence 35789999999985 445554 678999999999998 56666542 2234889999999999998888888999
Q ss_pred CCCCcEEEcCCCCccccCcc-ccCCCCCcEEeccCCCCCCCCcccCCCCCCCCEEEecCCCCCcccccccCCCCCCCEEe
Q 007237 89 MECLQELLLDGTDIKELPLS-IEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELN 167 (611)
Q Consensus 89 l~~L~~L~L~~~~i~~lp~~-~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~~~~l~~L~~L~ 167 (611)
+++|++|++++|.+..+|.. ++.+++|++|++++|......|..+..+++|++|++++|..... + ++.+++|+.|+
T Consensus 122 l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~--~~~l~~L~~L~ 198 (597)
T 3oja_B 122 VPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D--LSLIPSLFHAN 198 (597)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC-C--GGGCTTCSEEE
T ss_pred CCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc-C--hhhhhhhhhhh
Confidence 99999999999999999987 58999999999999876555666789999999999999865443 2 56789999999
Q ss_pred ecCccCCCcCcccCCCCCCCEEeccCCcCCcccccCccCCCCCCEEEecCCCCCcccCcccCCCCCccEEeccCCCcccC
Q 007237 168 LDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRP 247 (611)
Q Consensus 168 L~~~~i~~l~~~l~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~c~~l~~~p~~l~~l~~L~~L~l~~~~~~~~ 247 (611)
+++|.++.++ ..++|+.|++++|.... ++..+ .++|+.|++++|.... +..++.+++|+.|++++|.+..+
T Consensus 199 l~~n~l~~l~----~~~~L~~L~ls~n~l~~-~~~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~ 269 (597)
T 3oja_B 199 VSYNLLSTLA----IPIAVEELDASHNSINV-VRGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKI 269 (597)
T ss_dssp CCSSCCSEEE----CCTTCSEEECCSSCCCE-EECSC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEE
T ss_pred cccCcccccc----CCchhheeeccCCcccc-ccccc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCC
Confidence 9999887653 45689999999987643 34333 3689999999987665 36788999999999999999865
Q ss_pred -CccccccCCCcEEEcCCCCCCCCCCcccccccccccCCccchhhccCCCCCCCCCCCEEeccCCCCCCCCCCCCCCCCC
Q 007237 248 -PSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLH 326 (611)
Q Consensus 248 -~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~ 326 (611)
|..+..+++|+.|++++|.... ..+.+..+++|+.|++++|.+. .+|..+..++
T Consensus 270 ~~~~~~~l~~L~~L~Ls~N~l~~-----------------------l~~~~~~l~~L~~L~Ls~N~l~--~i~~~~~~l~ 324 (597)
T 3oja_B 270 MYHPFVKMQRLERLYISNNRLVA-----------------------LNLYGQPIPTLKVLDLSHNHLL--HVERNQPQFD 324 (597)
T ss_dssp ESGGGTTCSSCCEEECTTSCCCE-----------------------EECSSSCCTTCCEEECCSSCCC--CCGGGHHHHT
T ss_pred CHHHhcCccCCCEEECCCCCCCC-----------------------CCcccccCCCCcEEECCCCCCC--ccCcccccCC
Confidence 6788899999999999987321 1122456899999999999996 5888889999
Q ss_pred CCCEEEcCCCCCCcCCcccccCCCcCeeeccccc
Q 007237 327 SLNELYLSKNNFVTLPASINSLLNLKELEMEDCK 360 (611)
Q Consensus 327 ~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~ 360 (611)
+|+.|+|++|.++.+| +..+++|+.|++++|+
T Consensus 325 ~L~~L~L~~N~l~~~~--~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 325 RLENLYLDHNSIVTLK--LSTHHTLKNLTLSHND 356 (597)
T ss_dssp TCSEEECCSSCCCCCC--CCTTCCCSEEECCSSC
T ss_pred CCCEEECCCCCCCCcC--hhhcCCCCEEEeeCCC
Confidence 9999999999999886 7889999999999987
No 37
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.95 E-value=7e-26 Score=232.18 Aligned_cols=288 Identities=19% Similarity=0.243 Sum_probs=133.8
Q ss_pred cccEEEccCCCCCCcCCCCCCCcccccccccccccccccCccccccCccccCCCccEEEecCCcCcCcCCcccCCCCCCc
Q 007237 14 MLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQ 93 (611)
Q Consensus 14 ~L~~L~Ls~~~~l~~~~~~~~~~~L~~L~L~~c~~l~~i~~s~~~l~~L~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~ 93 (611)
+++.++++++. +..+|. .-.++|+.|++++| .++.+++. .+..+++|++|++++|.+.+..|..++.+++|+
T Consensus 32 ~l~~l~~~~~~-l~~lp~-~~~~~l~~L~L~~n-~i~~~~~~-----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (330)
T 1xku_A 32 HLRVVQCSDLG-LEKVPK-DLPPDTALLDLQNN-KITEIKDG-----DFKNLKNLHTLILINNKISKISPGAFAPLVKLE 103 (330)
T ss_dssp ETTEEECTTSC-CCSCCC-SCCTTCCEEECCSS-CCCCBCTT-----TTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCC
T ss_pred CCeEEEecCCC-ccccCc-cCCCCCeEEECCCC-cCCEeChh-----hhccCCCCCEEECCCCcCCeeCHHHhcCCCCCC
Confidence 45555555442 223332 11245555555554 33333321 112244555555555554444455555555555
Q ss_pred EEEcCCCCccccCccccCCCCCcEEeccCCCCCCCCcccCCCCCCCCEEEecCCCCCc--ccccccCCCCCCCEEeecCc
Q 007237 94 ELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLK--KFPQIVTTMEDLSELNLDGT 171 (611)
Q Consensus 94 ~L~L~~~~i~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~~l~--~~p~~~~~l~~L~~L~L~~~ 171 (611)
+|++++|.++.+|..+. ++|++|++++|......+..+.++++|+.|++++|.... ..+..+..+++|++|++++|
T Consensus 104 ~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n 181 (330)
T 1xku_A 104 RLYLSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT 181 (330)
T ss_dssp EEECCSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS
T ss_pred EEECCCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCC
Confidence 55555555555544433 455555555543222222234445555555555543321 33344444555555555555
Q ss_pred cCCCcCcccCCCCCCCEEeccCCcCCcccccCccCCCCCCEEEecCCCCCcccCcccCCCCCccEEeccCCCcccCCccc
Q 007237 172 SITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSV 251 (611)
Q Consensus 172 ~i~~l~~~l~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~c~~l~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~ 251 (611)
.++.+|..+. ++|+.|++++|...+..|..+..+++|++|++++|......+..++.+++|+.|++++|.+..+|..+
T Consensus 182 ~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l 259 (330)
T 1xku_A 182 NITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGL 259 (330)
T ss_dssp CCCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTT
T ss_pred ccccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhh
Confidence 5554444332 44555555544444333444444444444444444433333333444444444444444444444444
Q ss_pred cccCCCcEEEcCCCCCCCCCCcccccccccccCCccchhhccCCCCCCCCCCCEEeccCCCCCCCCCCCCCC------CC
Q 007237 252 FLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIG------NL 325 (611)
Q Consensus 252 ~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~~~~l~------~l 325 (611)
..+++|+.|++++|.+.. ..+..+. ..
T Consensus 260 ----------------------------------------------~~l~~L~~L~l~~N~i~~-~~~~~f~~~~~~~~~ 292 (330)
T 1xku_A 260 ----------------------------------------------ADHKYIQVVYLHNNNISA-IGSNDFCPPGYNTKK 292 (330)
T ss_dssp ----------------------------------------------TTCSSCCEEECCSSCCCC-CCTTSSSCSSCCTTS
T ss_pred ----------------------------------------------ccCCCcCEEECCCCcCCc-cChhhcCCccccccc
Confidence 445555555555555532 1112221 23
Q ss_pred CCCCEEEcCCCCCC---cCCcccccCCCcCeeeccccc
Q 007237 326 HSLNELYLSKNNFV---TLPASINSLLNLKELEMEDCK 360 (611)
Q Consensus 326 ~~L~~L~L~~n~l~---~lp~~i~~l~~L~~L~L~~c~ 360 (611)
++|+.|++++|.+. ..|..+..+++|+.+++++|+
T Consensus 293 ~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 293 ASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred ccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 56777777777665 234456667777777777653
No 38
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.95 E-value=5.8e-26 Score=242.79 Aligned_cols=292 Identities=19% Similarity=0.184 Sum_probs=194.5
Q ss_pred CCCccEEEecCCcCcCcCCcccCCCCCCcEEEcCCCCccccCccccCCCCCcEEeccCCCCCCCCcccCCCCCCCCEEEe
Q 007237 65 VESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKL 144 (611)
Q Consensus 65 l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L 144 (611)
+++|++|++++|.+.+ +| .++.+++|++|+++++.++.+| ++.+++|++|++++|. +..+| ++++++|++|++
T Consensus 41 l~~L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~-l~~~~--~~~l~~L~~L~L 113 (457)
T 3bz5_A 41 LATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNK-LTNLD--VTPLTKLTYLNC 113 (457)
T ss_dssp HTTCCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSC-CSCCC--CTTCTTCCEEEC
T ss_pred cCCCCEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCC-Cceee--cCCCCcCCEEEC
Confidence 5667777777766554 34 4666777777777777777765 6677777777777754 44454 666777777777
Q ss_pred cCCCCCcccccccCCCCCCCEEeecCccCCCcCcccCCCCCCCEEeccCCcCCcccccCccCCCCCCEEEecCCCCCccc
Q 007237 145 SGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENV 224 (611)
Q Consensus 145 ~~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~l~~~l~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~c~~l~~~ 224 (611)
++|...+ ++ ++.+++|++|++++|.++.++ ++.+++|+.|++++|...+.+ .+..+++|++|++++|.... +
T Consensus 114 ~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l 185 (457)
T 3bz5_A 114 DTNKLTK-LD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-L 185 (457)
T ss_dssp CSSCCSC-CC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-C
T ss_pred CCCcCCe-ec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-e
Confidence 7764333 43 667777777777777777664 667777777777777655555 35667777777777765433 4
Q ss_pred CcccCCCCCccEEeccCCCcccCCccccccCCCcEEEcCCCCCCCCCCcccccccccccCCccchhhccCCCCCCCCCCC
Q 007237 225 PDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLT 304 (611)
Q Consensus 225 p~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~ 304 (611)
| ++.+++|+.|++++|.+..++ +..+++|++|++++|... .+| +..+++|+
T Consensus 186 ~--l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~------------------------~ip-~~~l~~L~ 236 (457)
T 3bz5_A 186 D--VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLT------------------------EID-VTPLTQLT 236 (457)
T ss_dssp C--CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCS------------------------CCC-CTTCTTCS
T ss_pred c--cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCccc------------------------ccC-ccccCCCC
Confidence 4 667777777777777777663 566777777777776521 123 55667777
Q ss_pred EEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCC-----------cCCcccccCCCcCeeecccccccCcCCCCCCCcc
Q 007237 305 KLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFV-----------TLPASINSLLNLKELEMEDCKRLQFLPQLPPNII 373 (611)
Q Consensus 305 ~L~Ls~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~-----------~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp~~L~ 373 (611)
.|++++|.+.. +| ++.+++|+.|++++|+++ .+| ...+++|+.|++++|+.+..+|.-.++|+
T Consensus 237 ~L~l~~N~l~~--~~--~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~ 310 (457)
T 3bz5_A 237 YFDCSVNPLTE--LD--VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGIT 310 (457)
T ss_dssp EEECCSSCCSC--CC--CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCS
T ss_pred EEEeeCCcCCC--cC--HHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcce
Confidence 77777777753 22 334455554444444333 333 46778999999999998888887777888
Q ss_pred eeeecCCCCcccccCcccccccCCcccccccchhh
Q 007237 374 FVKVNGCSSLVTLLGALKLCKSNGIVIECIDSLKL 408 (611)
Q Consensus 374 ~L~i~~C~sL~~l~~~~~~~~l~~l~~~~c~~L~~ 408 (611)
.|++++|++|+.+.... ..+..+.+.+|++|+.
T Consensus 311 ~L~l~~~~~L~~L~L~~--N~l~~l~l~~l~~L~~ 343 (457)
T 3bz5_A 311 ELDLSQNPKLVYLYLNN--TELTELDVSHNTKLKS 343 (457)
T ss_dssp CCCCTTCTTCCEEECTT--CCCSCCCCTTCTTCSE
T ss_pred EechhhcccCCEEECCC--CcccccccccCCcCcE
Confidence 88999999888876433 2233456777777763
No 39
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.94 E-value=2e-25 Score=238.39 Aligned_cols=309 Identities=22% Similarity=0.259 Sum_probs=202.5
Q ss_pred ccEEEccCCCCCCcCCCCCCCcccccccccccccccccCccccccCccccCCCccEEEecCCcCcCcCCcccCCCCCCcE
Q 007237 15 LKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQE 94 (611)
Q Consensus 15 L~~L~Ls~~~~l~~~~~~~~~~~L~~L~L~~c~~l~~i~~s~~~l~~L~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~ 94 (611)
++.|++++|. +..+|.+ .++|++|+++++ .++.+|.. +++|++|++++|.+.+ +|.. .++|++
T Consensus 73 l~~L~l~~~~-l~~lp~~--~~~L~~L~l~~n-~l~~lp~~---------~~~L~~L~l~~n~l~~-l~~~---~~~L~~ 135 (454)
T 1jl5_A 73 AHELELNNLG-LSSLPEL--PPHLESLVASCN-SLTELPEL---------PQSLKSLLVDNNNLKA-LSDL---PPLLEY 135 (454)
T ss_dssp CSEEECTTSC-CSCCCSC--CTTCSEEECCSS-CCSSCCCC---------CTTCCEEECCSSCCSC-CCSC---CTTCCE
T ss_pred CCEEEecCCc-cccCCCC--cCCCCEEEccCC-cCCccccc---------cCCCcEEECCCCccCc-ccCC---CCCCCE
Confidence 5888998885 5556653 478889998876 56656632 3677888888776543 2221 157888
Q ss_pred EEcCCCCccccCccccCCCCCcEEeccCCCCCCCCcccCCCCCCCCEEEecCCCCCcccccccCCCCCCCEEeecCccCC
Q 007237 95 LLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSIT 174 (611)
Q Consensus 95 L~L~~~~i~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~~~~l~~L~~L~L~~~~i~ 174 (611)
|++++|.++.+| .++.+++|++|++++|. ++.+|.. ..+|++|++++|.. ..+| .++.+++|++|++++|.++
T Consensus 136 L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~-l~~lp~~---~~~L~~L~L~~n~l-~~l~-~~~~l~~L~~L~l~~N~l~ 208 (454)
T 1jl5_A 136 LGVSNNQLEKLP-ELQNSSFLKIIDVDNNS-LKKLPDL---PPSLEFIAAGNNQL-EELP-ELQNLPFLTAIYADNNSLK 208 (454)
T ss_dssp EECCSSCCSSCC-CCTTCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSCC-SSCC-CCTTCTTCCEEECCSSCCS
T ss_pred EECcCCCCCCCc-ccCCCCCCCEEECCCCc-CcccCCC---cccccEEECcCCcC-CcCc-cccCCCCCCEEECCCCcCC
Confidence 888888887777 57778888888887754 5556653 35788888887644 3355 4677788888888888777
Q ss_pred CcCcccCCCCCCCEEeccCCcCCcccccCccCCCCCCEEEecCCCCCcccCcccCCCCCccEEeccCCCcccCCcccccc
Q 007237 175 EVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLM 254 (611)
Q Consensus 175 ~l~~~l~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~c~~l~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~l 254 (611)
++|... ++|+.|++++|... .+|. +..+++|++|++++|... .+|.. +++|+.|++++|.+..+|.. +
T Consensus 209 ~l~~~~---~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~-~l~~~---~~~L~~L~l~~N~l~~l~~~---~ 276 (454)
T 1jl5_A 209 KLPDLP---LSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLK-TLPDL---PPSLEALNVRDNYLTDLPEL---P 276 (454)
T ss_dssp SCCCCC---TTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCS-SCCSC---CTTCCEEECCSSCCSCCCCC---C
T ss_pred cCCCCc---CcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCC-ccccc---ccccCEEECCCCcccccCcc---c
Confidence 766533 47778888877554 5663 777778888888776543 34442 36777888887777776653 3
Q ss_pred CCCcEEEcCCCCCCCCCCcccccccccccCCccchhhccCCCCCCC-CCCCEEeccCCCCCCCCCCCCCCCCCCCCEEEc
Q 007237 255 KNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGL-RSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYL 333 (611)
Q Consensus 255 ~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l-~~L~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~L 333 (611)
++|++|++++|........ ...+..+....+. +..+..+ ++|+.|++++|++.. +|.. +++|+.|++
T Consensus 277 ~~L~~L~ls~N~l~~l~~~---~~~L~~L~l~~N~----l~~i~~~~~~L~~L~Ls~N~l~~--lp~~---~~~L~~L~L 344 (454)
T 1jl5_A 277 QSLTFLDVSENIFSGLSEL---PPNLYYLNASSNE----IRSLCDLPPSLEELNVSNNKLIE--LPAL---PPRLERLIA 344 (454)
T ss_dssp TTCCEEECCSSCCSEESCC---CTTCCEEECCSSC----CSEECCCCTTCCEEECCSSCCSC--CCCC---CTTCCEEEC
T ss_pred CcCCEEECcCCccCcccCc---CCcCCEEECcCCc----CCcccCCcCcCCEEECCCCcccc--cccc---CCcCCEEEC
Confidence 6777777777763220000 0111111111111 1112233 488899999888853 6654 578889999
Q ss_pred CCCCCCcCCcccccCCCcCeeecccccccCcCCCCCCCccee
Q 007237 334 SKNNFVTLPASINSLLNLKELEMEDCKRLQFLPQLPPNIIFV 375 (611)
Q Consensus 334 ~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp~~L~~L 375 (611)
++|.++.+|. .+++|++|++++|+ ++.+|.+|.++..|
T Consensus 345 ~~N~l~~lp~---~l~~L~~L~L~~N~-l~~l~~ip~~l~~L 382 (454)
T 1jl5_A 345 SFNHLAEVPE---LPQNLKQLHVEYNP-LREFPDIPESVEDL 382 (454)
T ss_dssp CSSCCSCCCC---CCTTCCEEECCSSC-CSSCCCCCTTCCEE
T ss_pred CCCccccccc---hhhhccEEECCCCC-CCcCCCChHHHHhh
Confidence 9988888887 57888999998875 56666666554444
No 40
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.94 E-value=3.3e-25 Score=247.36 Aligned_cols=359 Identities=24% Similarity=0.271 Sum_probs=216.4
Q ss_pred cccEEEccCCCCCCcCC--CCCCCcccccccccccccccccCccccccCccccCCCccEEEecCCcCcCcCCcccCCCCC
Q 007237 14 MLKVMKLSHSENLIKTP--DFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMEC 91 (611)
Q Consensus 14 ~L~~L~Ls~~~~l~~~~--~~~~~~~L~~L~L~~c~~l~~i~~s~~~l~~L~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~ 91 (611)
++++|||++|+. ..+| +|.++++|++|+|++| .++.+++.. +..+++|++|+|++|.+.+..+..+.++++
T Consensus 53 ~~~~LdLs~N~i-~~l~~~~f~~l~~L~~L~Ls~N-~i~~i~~~~-----f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~ 125 (635)
T 4g8a_A 53 STKNLDLSFNPL-RHLGSYSFFSFPELQVLDLSRC-EIQTIEDGA-----YQSLSHLSTLILTGNPIQSLALGAFSGLSS 125 (635)
T ss_dssp TCCEEECTTSCC-CEECTTTTTTCTTCCEEECTTC-CCCEECTTT-----TTTCTTCCEEECTTCCCCEECGGGGTTCTT
T ss_pred CCCEEEeeCCCC-CCCCHHHHhCCCCCCEEECCCC-cCCCcChhH-----hcCCCCCCEEEccCCcCCCCCHHHhcCCCC
Confidence 678888888753 3433 4788888888888877 566666532 223677888888887766555566777888
Q ss_pred CcEEEcCCCCccccCc-cccCCCCCcEEeccCCCCCC-CCcccCCCCCCCCEEEecCCCCCcccccccC-----------
Q 007237 92 LQELLLDGTDIKELPL-SIEHLFGLVQLTLNDCKNLS-SLPVAISSFQCLRNLKLSGCSKLKKFPQIVT----------- 158 (611)
Q Consensus 92 L~~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~c~~l~-~lp~~l~~l~~L~~L~L~~~~~l~~~p~~~~----------- 158 (611)
|++|++++|.++.+|. .++++++|++|++++|.... .+|..++.+++|++|++++|...+..+..+.
T Consensus 126 L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~ 205 (635)
T 4g8a_A 126 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 205 (635)
T ss_dssp CCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCE
T ss_pred CCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhh
Confidence 8888888888877765 47778888888887765322 3456667777788887777643322111110
Q ss_pred --------------------------------------------------------------------------------
Q 007237 159 -------------------------------------------------------------------------------- 158 (611)
Q Consensus 159 -------------------------------------------------------------------------------- 158 (611)
T Consensus 206 ~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~ 285 (635)
T 4g8a_A 206 LDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE 285 (635)
T ss_dssp EECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEE
T ss_pred hhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhh
Confidence
Q ss_pred ----------------------------------------CCCCCCEEeecCccCCCcCc--------------------
Q 007237 159 ----------------------------------------TMEDLSELNLDGTSITEVPS-------------------- 178 (611)
Q Consensus 159 ----------------------------------------~l~~L~~L~L~~~~i~~l~~-------------------- 178 (611)
...+|+.|++.++.+..++.
T Consensus 286 l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~ 365 (635)
T 4g8a_A 286 FRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAF 365 (635)
T ss_dssp EEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBC
T ss_pred hhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCc
Confidence 11123333333333222111
Q ss_pred ccCCCCCCCEEeccCCcCCc--ccccCccCCCCCCEEEecCCCCCcccCcccCCCCCccEEeccCCCcccCC--cccccc
Q 007237 179 SIELLPGLELLNLNDCKNFA--RVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPP--SSVFLM 254 (611)
Q Consensus 179 ~l~~l~~L~~L~L~~~~~~~--~lp~~i~~l~~L~~L~l~~c~~l~~~p~~l~~l~~L~~L~l~~~~~~~~~--~~~~~l 254 (611)
....+++|+.|++++|.... ..+..+..+.+|+.|++..+... ..+..+..+++|+.+++..+...... ..+..+
T Consensus 366 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l 444 (635)
T 4g8a_A 366 SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 444 (635)
T ss_dssp CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EECSCCTTCTTCCEEECTTSEEESTTSSCTTTTC
T ss_pred ccccccccccchhhccccccccccccchhhhhhhhhhhccccccc-cccccccccccccchhhhhccccccccccccccc
Confidence 11235677777777765432 23334455667777777665432 23444556667777776666554322 234456
Q ss_pred CCCcEEEcCCCCCCCCCC-cccccccccccCCccc-hhhccC-CCCCCCCCCCEEeccCCCCCCCCCCCCCCCCCCCCEE
Q 007237 255 KNLRTLSFSGCNGPPSSA-SWHLHLPFNLMGKSSC-LVALML-PSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNEL 331 (611)
Q Consensus 255 ~~L~~L~l~~c~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~l-~~l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~L~~L 331 (611)
++++.++++.|....... .......+..+....+ ...... ..+..+++|+.|++++|++. +..|..+.++++|+.|
T Consensus 445 ~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~-~l~~~~f~~l~~L~~L 523 (635)
T 4g8a_A 445 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVL 523 (635)
T ss_dssp TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEE
T ss_pred cccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccC-CcChHHHcCCCCCCEE
Confidence 666666666655221110 1111111111111111 111122 33778889999999999885 4567788899999999
Q ss_pred EcCCCCCCcCCc-ccccCCCcCeeecccccccCcCCC----CCCCcceeeecCCC
Q 007237 332 YLSKNNFVTLPA-SINSLLNLKELEMEDCKRLQFLPQ----LPPNIIFVKVNGCS 381 (611)
Q Consensus 332 ~L~~n~l~~lp~-~i~~l~~L~~L~L~~c~~L~~lp~----lp~~L~~L~i~~C~ 381 (611)
+|++|+++.++. .+..+++|++|+|++|+-....|+ +|++|+.|++++.|
T Consensus 524 ~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 524 NMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp ECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred ECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence 999999987754 578899999999998874333332 45677777776544
No 41
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.94 E-value=1.8e-25 Score=229.30 Aligned_cols=283 Identities=17% Similarity=0.215 Sum_probs=155.0
Q ss_pred ccccccccccccccccCccccccCccccCCCccEEEecCCcCcCcCCcccCCCCCCcEEEcCCCCcccc-CccccCCCCC
Q 007237 37 NLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKEL-PLSIEHLFGL 115 (611)
Q Consensus 37 ~L~~L~L~~c~~l~~i~~s~~~l~~L~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~L~~~~i~~l-p~~~~~l~~L 115 (611)
+|+.++++++ .++.+|..+ .++|++|++++|.+.+..|..+.++++|++|+++++.++.+ |..+..+++|
T Consensus 34 ~l~~l~~~~~-~l~~ip~~~--------~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 104 (332)
T 2ft3_A 34 HLRVVQCSDL-GLKAVPKEI--------SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKL 104 (332)
T ss_dssp ETTEEECCSS-CCSSCCSCC--------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTC
T ss_pred cCCEEECCCC-CccccCCCC--------CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCC
Confidence 4555555554 444554432 23555566666555544455555666666666666665554 4455556666
Q ss_pred cEEeccCCCCCCCCcccCCCCCCCCEEEecCCCCCcccccccCCCCCCCEEeecCccCC---CcCcccCCCCCCCEEecc
Q 007237 116 VQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSIT---EVPSSIELLPGLELLNLN 192 (611)
Q Consensus 116 ~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~~~~l~~L~~L~L~~~~i~---~l~~~l~~l~~L~~L~L~ 192 (611)
++|++++|. +..+|..+. ++|++|++++|......+..+..+++|++|++++|.++ ..+..+..+ +|+.|+++
T Consensus 105 ~~L~L~~n~-l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~ 180 (332)
T 2ft3_A 105 QKLYISKNH-LVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRIS 180 (332)
T ss_dssp CEEECCSSC-CCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCC
T ss_pred CEEECCCCc-CCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECc
Confidence 666665533 445554433 55666666655444333344555666666666666554 223334444 56666666
Q ss_pred CCcCCcccccCccCCCCCCEEEecCCCCCcccCcccCCCCCccEEeccCCCcccCCc-cccccCCCcEEEcCCCCCCCCC
Q 007237 193 DCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPS-SVFLMKNLRTLSFSGCNGPPSS 271 (611)
Q Consensus 193 ~~~~~~~lp~~i~~l~~L~~L~l~~c~~l~~~p~~l~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~c~~~~~~ 271 (611)
+|...+ +|..+. ++|++|++++|......+..+..+++|+.|++++|.+..++. .+..+++|++|++++|...
T Consensus 181 ~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~--- 254 (332)
T 2ft3_A 181 EAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS--- 254 (332)
T ss_dssp SSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC---
T ss_pred CCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe---
Confidence 554332 444332 456666666655544444556666666666666666665443 4555666666666665421
Q ss_pred CcccccccccccCCccchhhccCC-CCCCCCCCCEEeccCCCCCCCCCCCCCCC------CCCCCEEEcCCCCCC---cC
Q 007237 272 ASWHLHLPFNLMGKSSCLVALMLP-SLSGLRSLTKLDLSDCGLGEGAIPSDIGN------LHSLNELYLSKNNFV---TL 341 (611)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~l~-~l~~l~~L~~L~Ls~~~l~~~~~~~~l~~------l~~L~~L~L~~n~l~---~l 341 (611)
.+| .+..+++|+.|++++|.+.. ..+..+.. .++|+.|++++|.+. ..
T Consensus 255 ---------------------~lp~~l~~l~~L~~L~l~~N~l~~-~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~ 312 (332)
T 2ft3_A 255 ---------------------RVPAGLPDLKLLQVVYLHTNNITK-VGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQ 312 (332)
T ss_dssp ---------------------BCCTTGGGCTTCCEEECCSSCCCB-CCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSC
T ss_pred ---------------------ecChhhhcCccCCEEECCCCCCCc-cChhHccccccccccccccceEeecCcccccccC
Confidence 111 24556667777777776642 22222322 467888888888776 34
Q ss_pred CcccccCCCcCeeeccccc
Q 007237 342 PASINSLLNLKELEMEDCK 360 (611)
Q Consensus 342 p~~i~~l~~L~~L~L~~c~ 360 (611)
|..+..+++|+.|++++|+
T Consensus 313 ~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 313 PATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp GGGGTTBCCSTTEEC----
T ss_pred cccccccchhhhhhccccc
Confidence 4567788888888888875
No 42
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.94 E-value=1.2e-24 Score=223.01 Aligned_cols=262 Identities=20% Similarity=0.243 Sum_probs=150.7
Q ss_pred ccccccccccccccccCccccccCccccCCCccEEEecCCcCcCcCCcccCCCCCCcEEEcCCCCcccc-CccccCCCCC
Q 007237 37 NLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKEL-PLSIEHLFGL 115 (611)
Q Consensus 37 ~L~~L~L~~c~~l~~i~~s~~~l~~L~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~L~~~~i~~l-p~~~~~l~~L 115 (611)
+|+.++++++ .++.+|..+ .++|++|++++|.+.+..+..++++++|++|+++++.++.+ |..+..+++|
T Consensus 32 ~l~~l~~~~~-~l~~lp~~~--------~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 102 (330)
T 1xku_A 32 HLRVVQCSDL-GLEKVPKDL--------PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 102 (330)
T ss_dssp ETTEEECTTS-CCCSCCCSC--------CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTC
T ss_pred CCeEEEecCC-CccccCccC--------CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCC
Confidence 4555555543 344444322 23455555555554444444555555555555555555544 4445555555
Q ss_pred cEEeccCCCCCCCCcccCCCCCCCCEEEecCCCCCcccccccCCCCCCCEEeecCccCCCcCcc-cCCCCCCCEEeccCC
Q 007237 116 VQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSS-IELLPGLELLNLNDC 194 (611)
Q Consensus 116 ~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~l~~~-l~~l~~L~~L~L~~~ 194 (611)
++|++++|. ++.+|..+. ++|++| ++++|.++.++.. +..+++|+.|++++|
T Consensus 103 ~~L~Ls~n~-l~~l~~~~~--~~L~~L------------------------~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 155 (330)
T 1xku_A 103 ERLYLSKNQ-LKELPEKMP--KTLQEL------------------------RVHENEITKVRKSVFNGLNQMIVVELGTN 155 (330)
T ss_dssp CEEECCSSC-CSBCCSSCC--TTCCEE------------------------ECCSSCCCBBCHHHHTTCTTCCEEECCSS
T ss_pred CEEECCCCc-CCccChhhc--ccccEE------------------------ECCCCcccccCHhHhcCCccccEEECCCC
Confidence 555555432 334443332 444444 4444444444332 444555555555554
Q ss_pred cCCc--ccccCccCCCCCCEEEecCCCCCcccCcccCCCCCccEEeccCCCcccC-CccccccCCCcEEEcCCCCCCCCC
Q 007237 195 KNFA--RVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRP-PSSVFLMKNLRTLSFSGCNGPPSS 271 (611)
Q Consensus 195 ~~~~--~lp~~i~~l~~L~~L~l~~c~~l~~~p~~l~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~c~~~~~~ 271 (611)
.... ..+..+..+++|++|++++|.. ..+|..+. ++|+.|++++|.+..+ +..+..+++|++|++++|....
T Consensus 156 ~l~~~~~~~~~~~~l~~L~~L~l~~n~l-~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-- 230 (330)
T 1xku_A 156 PLKSSGIENGAFQGMKKLSYIRIADTNI-TTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA-- 230 (330)
T ss_dssp CCCGGGBCTTGGGGCTTCCEEECCSSCC-CSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCE--
T ss_pred cCCccCcChhhccCCCCcCEEECCCCcc-ccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCce--
Confidence 4321 3344455555555555555433 23443332 5666666666666644 4455566667777776665210
Q ss_pred CcccccccccccCCccchhhccCCCCCCCCCCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCCcCCcc-cc----
Q 007237 272 ASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPAS-IN---- 346 (611)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~-i~---- 346 (611)
.....+..+++|+.|++++|.+. .+|..+..+++|+.|++++|+++.+|.. +.
T Consensus 231 --------------------~~~~~~~~l~~L~~L~L~~N~l~--~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~ 288 (330)
T 1xku_A 231 --------------------VDNGSLANTPHLRELHLNNNKLV--KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGY 288 (330)
T ss_dssp --------------------ECTTTGGGSTTCCEEECCSSCCS--SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSC
T ss_pred --------------------eChhhccCCCCCCEEECCCCcCc--cCChhhccCCCcCEEECCCCcCCccChhhcCCccc
Confidence 01123566788999999999985 5899999999999999999999988753 21
Q ss_pred --cCCCcCeeecccccc
Q 007237 347 --SLLNLKELEMEDCKR 361 (611)
Q Consensus 347 --~l~~L~~L~L~~c~~ 361 (611)
..+.|+.|++.+++.
T Consensus 289 ~~~~~~l~~l~l~~N~~ 305 (330)
T 1xku_A 289 NTKKASYSGVSLFSNPV 305 (330)
T ss_dssp CTTSCCCSEEECCSSSS
T ss_pred ccccccccceEeecCcc
Confidence 357899999999984
No 43
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.94 E-value=8.7e-27 Score=236.96 Aligned_cols=251 Identities=19% Similarity=0.296 Sum_probs=159.0
Q ss_pred CCccEEEecCCcCcC--cCCcccCCCCCCcEEEcCC-CCcc-ccCccccCCCCCcEEeccCCCCCCCCcccCCCCCCCCE
Q 007237 66 ESLKILILSGCLKLR--KFPHVVGSMECLQELLLDG-TDIK-ELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRN 141 (611)
Q Consensus 66 ~~L~~L~Ls~~~~~~--~lp~~l~~l~~L~~L~L~~-~~i~-~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~ 141 (611)
.++++|+|++|.+.+ .+|..++++++|++|++++ +.+. .+|..++++++|++|++++|.....+|..+.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 467777777777666 6666677777777777763 5555 55666666666666666665444455555555666666
Q ss_pred EEecCCCCCcccccccCCCCCCCEEeecCccCC-CcCcccCCCC-CCCEEeccCCcCCcccccCccCCCCCCEEEecCCC
Q 007237 142 LKLSGCSKLKKFPQIVTTMEDLSELNLDGTSIT-EVPSSIELLP-GLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCC 219 (611)
Q Consensus 142 L~L~~~~~l~~~p~~~~~l~~L~~L~L~~~~i~-~l~~~l~~l~-~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~c~ 219 (611)
|++++|...+.+|..+..+++|++|++++|.++ .+|..+..++ +|+.|++++|...+.+|..+..++ |+.|++++|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 666665544455555555555666665555555 4555555554 555555555555445555554444 5555555544
Q ss_pred CCcccCcccCCCCCccEEeccCCCcccCCccccccCCCcEEEcCCCCCCCCCCcccccccccccCCccchhhccCCCCCC
Q 007237 220 KLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSG 299 (611)
Q Consensus 220 ~l~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 299 (611)
.....|..++.+++|+.|++++|.+... .+.+..
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~----------------------------------------------~~~~~~ 242 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAFD----------------------------------------------LGKVGL 242 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCB----------------------------------------------GGGCCC
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceeee----------------------------------------------cCcccc
Confidence 4444444444444444444444433321 222456
Q ss_pred CCCCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCC-cCCcccccCCCcCeeecccccccCcC
Q 007237 300 LRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFV-TLPASINSLLNLKELEMEDCKRLQFL 365 (611)
Q Consensus 300 l~~L~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~l 365 (611)
+++|++|++++|.+. +.+|..+..+++|+.|++++|+++ .+|.. .++++|+.|++.+|+.+...
T Consensus 243 l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~ 307 (313)
T 1ogq_A 243 SKNLNGLDLRNNRIY-GTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGS 307 (313)
T ss_dssp CTTCCEEECCSSCCE-ECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEEST
T ss_pred cCCCCEEECcCCccc-CcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCC
Confidence 678888888888885 568888999999999999999998 67765 88999999999999876553
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.94 E-value=7.2e-25 Score=224.82 Aligned_cols=294 Identities=16% Similarity=0.180 Sum_probs=176.1
Q ss_pred cccEEEccCCCCCCcCCCCCCCcccccccccccccccccCccccccCccccCCCccEEEecCCcCcCcCCcccCCCCCCc
Q 007237 14 MLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQ 93 (611)
Q Consensus 14 ~L~~L~Ls~~~~l~~~~~~~~~~~L~~L~L~~c~~l~~i~~s~~~l~~L~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~ 93 (611)
+++.++++++. +..+|.- -.++|+.|++++| .++.+++. .+..+++|++|++++|.+.+..|..++++++|+
T Consensus 34 ~l~~l~~~~~~-l~~ip~~-~~~~l~~L~l~~n-~i~~~~~~-----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 105 (332)
T 2ft3_A 34 HLRVVQCSDLG-LKAVPKE-ISPDTTLLDLQNN-DISELRKD-----DFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQ 105 (332)
T ss_dssp ETTEEECCSSC-CSSCCSC-CCTTCCEEECCSS-CCCEECTT-----TTTTCTTCCEEECCSSCCCEECGGGSTTCTTCC
T ss_pred cCCEEECCCCC-ccccCCC-CCCCCeEEECCCC-cCCccCHh-----HhhCCCCCcEEECCCCccCccCHhHhhCcCCCC
Confidence 56777776664 3344421 1356777777765 45544431 123356677777777766666666777777777
Q ss_pred EEEcCCCCccccCccccCCCCCcEEeccCCCCCCCCcc-cCCCCCCCCEEEecCCCCC--cccccccCCCCCCCEEeecC
Q 007237 94 ELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPV-AISSFQCLRNLKLSGCSKL--KKFPQIVTTMEDLSELNLDG 170 (611)
Q Consensus 94 ~L~L~~~~i~~lp~~~~~l~~L~~L~L~~c~~l~~lp~-~l~~l~~L~~L~L~~~~~l--~~~p~~~~~l~~L~~L~L~~ 170 (611)
+|++++|.++.+|..+. ++|++|++++|. +..+|. .+.++++|+.|++++|... ...+..+..+ +|++|++++
T Consensus 106 ~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~ 181 (332)
T 2ft3_A 106 KLYISKNHLVEIPPNLP--SSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISE 181 (332)
T ss_dssp EEECCSSCCCSCCSSCC--TTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCS
T ss_pred EEECCCCcCCccCcccc--ccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcC
Confidence 77777777777766554 677777777654 344443 3666777777777776543 2445555555 677777777
Q ss_pred ccCCCcCcccCCCCCCCEEeccCCcCCcccccCccCCCCCCEEEecCCCCCcccCcccCCCCCccEEeccCCCcccCCcc
Q 007237 171 TSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSS 250 (611)
Q Consensus 171 ~~i~~l~~~l~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~c~~l~~~p~~l~~l~~L~~L~l~~~~~~~~~~~ 250 (611)
|.++.+|..+. ++|+.|++++|...+..+..+..+++|++|++++|......+..++.+++|+.|++++|.+..+|..
T Consensus 182 n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~ 259 (332)
T 2ft3_A 182 AKLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAG 259 (332)
T ss_dssp SBCSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTT
T ss_pred CCCCccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChh
Confidence 77777666543 5677777777766665556667777777777777665555555666777777777777777777776
Q ss_pred ccccCCCcEEEcCCCCCCCCCCcccccccccccCCccchhhccCCCCCCCCCCCEEeccCCCCCC-CCCCCCCCCCCCCC
Q 007237 251 VFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGE-GAIPSDIGNLHSLN 329 (611)
Q Consensus 251 ~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~-~~~~~~l~~l~~L~ 329 (611)
+..+++|++|++++|......... + .........+.|+.|++++|.+.. +..|..+..+++|+
T Consensus 260 l~~l~~L~~L~l~~N~l~~~~~~~-~---------------~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~ 323 (332)
T 2ft3_A 260 LPDLKLLQVVYLHTNNITKVGVND-F---------------CPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRL 323 (332)
T ss_dssp GGGCTTCCEEECCSSCCCBCCTTS-S---------------SCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCST
T ss_pred hhcCccCCEEECCCCCCCccChhH-c---------------cccccccccccccceEeecCcccccccCcccccccchhh
Confidence 777777777777776522110000 0 000001124566777777776542 22344566677777
Q ss_pred EEEcCCCC
Q 007237 330 ELYLSKNN 337 (611)
Q Consensus 330 ~L~L~~n~ 337 (611)
.+++++|+
T Consensus 324 ~l~l~~n~ 331 (332)
T 2ft3_A 324 AIQFGNYK 331 (332)
T ss_dssp TEEC----
T ss_pred hhhccccc
Confidence 77776663
No 45
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=1.2e-25 Score=229.97 Aligned_cols=223 Identities=23% Similarity=0.388 Sum_probs=199.7
Q ss_pred CcccccccccccccccccCccccccCccccCCCccEEEecCCcCcCcCCcccCCCCCCcEEEcCCCCccccCccccCCCC
Q 007237 35 APNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFG 114 (611)
Q Consensus 35 ~~~L~~L~L~~c~~l~~i~~s~~~l~~L~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~ 114 (611)
.++++.|+|+++ .++.+|..++. +++|++|+|++|.+. .+|..++.+++|++|++++|.++.+|..++.+++
T Consensus 80 ~~~l~~L~L~~n-~l~~lp~~l~~------l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~ 151 (328)
T 4fcg_A 80 QPGRVALELRSV-PLPQFPDQAFR------LSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRALPASIASLNR 151 (328)
T ss_dssp STTCCEEEEESS-CCSSCCSCGGG------GTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTT
T ss_pred ccceeEEEccCC-CchhcChhhhh------CCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccccCcHHHhcCcC
Confidence 477888888886 67778776555 678999999998877 8888899999999999999999999999999999
Q ss_pred CcEEeccCCCCCCCCcccCCC---------CCCCCEEEecCCCCCcccccccCCCCCCCEEeecCccCCCcCcccCCCCC
Q 007237 115 LVQLTLNDCKNLSSLPVAISS---------FQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPG 185 (611)
Q Consensus 115 L~~L~L~~c~~l~~lp~~l~~---------l~~L~~L~L~~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~l~~~l~~l~~ 185 (611)
|++|++++|..++.+|..+.. +++|++|++++|... .+|..++.+++|++|++++|.++.+|..++.+++
T Consensus 152 L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~ 230 (328)
T 4fcg_A 152 LRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPK 230 (328)
T ss_dssp CCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTT
T ss_pred CCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCC
Confidence 999999999989999887654 999999999997544 8898999999999999999999999999999999
Q ss_pred CCEEeccCCcCCcccccCccCCCCCCEEEecCCCCCcccCcccCCCCCccEEeccCCCcc-cCCccccccCCCcEEEcCC
Q 007237 186 LELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVR-RPPSSVFLMKNLRTLSFSG 264 (611)
Q Consensus 186 L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~c~~l~~~p~~l~~l~~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~~ 264 (611)
|+.|++++|...+.+|..+..+++|++|++++|...+.+|..++.+++|+.|++++|.+. .+|..+..+++|+.+.+..
T Consensus 231 L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 231 LEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp CCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred CCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence 999999999999999999999999999999999999999999999999999999998765 7899999999999999876
Q ss_pred CC
Q 007237 265 CN 266 (611)
Q Consensus 265 c~ 266 (611)
+.
T Consensus 311 ~~ 312 (328)
T 4fcg_A 311 HL 312 (328)
T ss_dssp GG
T ss_pred HH
Confidence 43
No 46
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.93 E-value=4e-26 Score=232.09 Aligned_cols=252 Identities=17% Similarity=0.222 Sum_probs=217.5
Q ss_pred cccccCC-----CcccEEEccCCCCCC--cCC-CCCCCccccccccccccccc-ccCccccccCccccCCCccEEEecCC
Q 007237 6 FCFQQHL-----NMLKVMKLSHSENLI--KTP-DFTEAPNLEELYLEGCTKLR-KVHPSLLLHNKLIFVESLKILILSGC 76 (611)
Q Consensus 6 ~~~~~~l-----~~L~~L~Ls~~~~l~--~~~-~~~~~~~L~~L~L~~c~~l~-~i~~s~~~l~~L~~l~~L~~L~Ls~~ 76 (611)
|.|+.-- .+++.|+|+++.... .+| .+..+++|++|+++++..+. .+|..++. +++|++|++++|
T Consensus 38 w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~------l~~L~~L~Ls~n 111 (313)
T 1ogq_A 38 WLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK------LTQLHYLYITHT 111 (313)
T ss_dssp STTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGG------CTTCSEEEEEEE
T ss_pred CcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhc------CCCCCEEECcCC
Confidence 6676532 689999999997665 454 58899999999999633444 56665544 789999999999
Q ss_pred cCcCcCCcccCCCCCCcEEEcCCCCcc-ccCccccCCCCCcEEeccCCCCCCCCcccCCCCC-CCCEEEecCCCCCcccc
Q 007237 77 LKLRKFPHVVGSMECLQELLLDGTDIK-ELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQ-CLRNLKLSGCSKLKKFP 154 (611)
Q Consensus 77 ~~~~~lp~~l~~l~~L~~L~L~~~~i~-~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~-~L~~L~L~~~~~l~~~p 154 (611)
.+.+.+|..+.++++|++|++++|.+. .+|..+..+++|++|++++|.....+|..+..++ +|+.|++++|...+..|
T Consensus 112 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~ 191 (313)
T 1ogq_A 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP 191 (313)
T ss_dssp CCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECC
T ss_pred eeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCC
Confidence 999899999999999999999999998 7899999999999999999876568898898888 99999999998877889
Q ss_pred cccCCCCCCCEEeecCccCC-CcCcccCCCCCCCEEeccCCcCCcccccCccCCCCCCEEEecCCCCCcccCcccCCCCC
Q 007237 155 QIVTTMEDLSELNLDGTSIT-EVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVES 233 (611)
Q Consensus 155 ~~~~~l~~L~~L~L~~~~i~-~l~~~l~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~c~~l~~~p~~l~~l~~ 233 (611)
..+..+. |++|++++|.++ ..|..+..+++|+.|++++|...+.+|. +..+++|++|++++|...+.+|..++.+++
T Consensus 192 ~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 269 (313)
T 1ogq_A 192 PTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKF 269 (313)
T ss_dssp GGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTT
T ss_pred hHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcC
Confidence 9998887 999999999998 4666789999999999999988766665 788999999999999888889999999999
Q ss_pred ccEEeccCCCcc-cCCccccccCCCcEEEcCCCC
Q 007237 234 LEELDISETAVR-RPPSSVFLMKNLRTLSFSGCN 266 (611)
Q Consensus 234 L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~~c~ 266 (611)
|+.|++++|.+. .+|.. ..+++|+.|++.+|.
T Consensus 270 L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 270 LHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp CCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred CCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 999999999998 55554 889999999999887
No 47
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.93 E-value=1.9e-24 Score=241.18 Aligned_cols=328 Identities=20% Similarity=0.166 Sum_probs=217.2
Q ss_pred CCcccccCCCcccEEEccCCCCCCcCC-CCCCCcccccccccccccccccCccccccCccccCCCccEEEecCCcCcCcC
Q 007237 4 APFCFQQHLNMLKVMKLSHSENLIKTP-DFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKF 82 (611)
Q Consensus 4 ~~~~~~~~l~~L~~L~Ls~~~~l~~~~-~~~~~~~L~~L~L~~c~~l~~i~~s~~~l~~L~~l~~L~~L~Ls~~~~~~~l 82 (611)
+|-..+..+++|++|||++|+...-.+ .|.++++|++|+|++| .++.+|+.. +..+++|++|+|++|.+.+..
T Consensus 67 l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~-----f~~L~~L~~L~Ls~N~l~~l~ 140 (635)
T 4g8a_A 67 LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGA-----FSGLSSLQKLVAVETNLASLE 140 (635)
T ss_dssp ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECGGG-----GTTCTTCCEEECTTSCCCCST
T ss_pred CCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC-cCCCCCHHH-----hcCCCCCCEEECCCCcCCCCC
Confidence 345668899999999999996433333 4899999999999998 688877643 234788999999999877766
Q ss_pred CcccCCCCCCcEEEcCCCCccc--cCccccCCCCCcEEeccCCCCCCCCcccC---------------------------
Q 007237 83 PHVVGSMECLQELLLDGTDIKE--LPLSIEHLFGLVQLTLNDCKNLSSLPVAI--------------------------- 133 (611)
Q Consensus 83 p~~l~~l~~L~~L~L~~~~i~~--lp~~~~~l~~L~~L~L~~c~~l~~lp~~l--------------------------- 133 (611)
+..++++++|++|++++|.++. +|..++.+++|++|++++|......|..+
T Consensus 141 ~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~ 220 (635)
T 4g8a_A 141 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA 220 (635)
T ss_dssp TCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTT
T ss_pred hhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCccc
Confidence 6678899999999999998874 56778888889988888764211101000
Q ss_pred --------------------------------------------------------------------------------
Q 007237 134 -------------------------------------------------------------------------------- 133 (611)
Q Consensus 134 -------------------------------------------------------------------------------- 133 (611)
T Consensus 221 ~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~ 300 (635)
T 4g8a_A 221 FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIID 300 (635)
T ss_dssp TTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTT
T ss_pred ccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhh
Confidence
Q ss_pred ------------------------CCCCCCCEEEecCCCCCccc-------------------ccccCCCCCCCEEeecC
Q 007237 134 ------------------------SSFQCLRNLKLSGCSKLKKF-------------------PQIVTTMEDLSELNLDG 170 (611)
Q Consensus 134 ------------------------~~l~~L~~L~L~~~~~l~~~-------------------p~~~~~l~~L~~L~L~~ 170 (611)
....+|+.|++.+|...... +.....+++|+.|++++
T Consensus 301 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~ 380 (635)
T 4g8a_A 301 LFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSR 380 (635)
T ss_dssp TTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCS
T ss_pred hhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhc
Confidence 01123344444443211100 01123467788888887
Q ss_pred ccCCC---cCccc-----------------------CCCCCCCEEeccCCcCCcccc-cCccCCCCCCEEEecCCCCCcc
Q 007237 171 TSITE---VPSSI-----------------------ELLPGLELLNLNDCKNFARVP-SSINGLKSLKTLNLSGCCKLEN 223 (611)
Q Consensus 171 ~~i~~---l~~~l-----------------------~~l~~L~~L~L~~~~~~~~lp-~~i~~l~~L~~L~l~~c~~l~~ 223 (611)
|.+.. .+... ..+++|+.+++.++......+ ..+..+++++.+++++|.....
T Consensus 381 n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~ 460 (635)
T 4g8a_A 381 NGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 460 (635)
T ss_dssp SCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEEC
T ss_pred cccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccccccccccccc
Confidence 76642 22223 334444555544443333322 2344556666666666555555
Q ss_pred cCcccCCCCCccEEeccCCCcc--cCCccccccCCCcEEEcCCCCCCCCCCcccccccccccCCccchhhccCCCCCCCC
Q 007237 224 VPDTLGQVESLEELDISETAVR--RPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLR 301 (611)
Q Consensus 224 ~p~~l~~l~~L~~L~l~~~~~~--~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~ 301 (611)
.+..+..+++|+.|++++|... ..|..+..+++|++|++++|... ......+.+++
T Consensus 461 ~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~----------------------~l~~~~f~~l~ 518 (635)
T 4g8a_A 461 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE----------------------QLSPTAFNSLS 518 (635)
T ss_dssp CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC----------------------EECTTTTTTCT
T ss_pred cccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccC----------------------CcChHHHcCCC
Confidence 5555666666777777666543 24555666677777777766521 11223388999
Q ss_pred CCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCCcC-CcccccC-CCcCeeeccccc
Q 007237 302 SLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTL-PASINSL-LNLKELEMEDCK 360 (611)
Q Consensus 302 ~L~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~l-p~~i~~l-~~L~~L~L~~c~ 360 (611)
+|+.|+|++|++. +..+..+..+++|+.|+|++|+++.+ |..+..+ ++|++|+|++|+
T Consensus 519 ~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 519 SLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp TCCEEECTTSCCC-BCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred CCCEEECCCCcCC-CCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence 9999999999995 44566789999999999999999966 4567777 689999999987
No 48
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.92 E-value=1.5e-24 Score=221.89 Aligned_cols=176 Identities=28% Similarity=0.471 Sum_probs=144.5
Q ss_pred CCCccEEEecCCcCcCcCCcccCCCCCCcEEEcCCCCccccCccccCCCCCcEEeccCCCCCCCCcccCCCCCCCCEEEe
Q 007237 65 VESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKL 144 (611)
Q Consensus 65 l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L 144 (611)
.+++++|+|++|.+. .+|..++++++|++|++++|.+..+|..++.+++|++|++++|. +..+|..+.++++|++|++
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNP-LRALPASIASLNRLRELSI 157 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGCTTCCEEEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCc-cccCcHHHhcCcCCCEEEC
Confidence 478999999998876 78888899999999999999999999999999999999999975 5588988999999999999
Q ss_pred cCCCCCcccccccCC---------CCCCCEEeecCccCCCcCcccCCCCCCCEEeccCCcCCcccccCccCCCCCCEEEe
Q 007237 145 SGCSKLKKFPQIVTT---------MEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNL 215 (611)
Q Consensus 145 ~~~~~l~~~p~~~~~---------l~~L~~L~L~~~~i~~l~~~l~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l 215 (611)
++|...+.+|..+.. +++|++|++++|.++.+|..++.+++|++|++++|... .+|..+..+++|++|++
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~L 236 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDL 236 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEEC
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEEC
Confidence 999888888877654 88888888888888888887888888888888887655 45556777777777777
Q ss_pred cCCCCCcccCcccCCCCCccEEeccCCC
Q 007237 216 SGCCKLENVPDTLGQVESLEELDISETA 243 (611)
Q Consensus 216 ~~c~~l~~~p~~l~~l~~L~~L~l~~~~ 243 (611)
++|...+.+|..++.+++|+.|++++|.
T Consensus 237 s~n~~~~~~p~~~~~l~~L~~L~L~~n~ 264 (328)
T 4fcg_A 237 RGCTALRNYPPIFGGRAPLKRLILKDCS 264 (328)
T ss_dssp TTCTTCCBCCCCTTCCCCCCEEECTTCT
T ss_pred cCCcchhhhHHHhcCCCCCCEEECCCCC
Confidence 7777777777666666666666555543
No 49
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.91 E-value=6e-24 Score=219.92 Aligned_cols=251 Identities=16% Similarity=0.195 Sum_probs=165.4
Q ss_pred CCcEEEcCCCCccccCc-cccCCCCCcEEeccCCCCCCCCcccCCCCCCCCEEEecCCCCCcccccccCCCCCCCEEeec
Q 007237 91 CLQELLLDGTDIKELPL-SIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLD 169 (611)
Q Consensus 91 ~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~~~~l~~L~~L~L~ 169 (611)
+|++|+++++.++.+|. .+.++++|++|++++|......|..+.++++|++|++++|......+..++.+++|++|+++
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 132 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL 132 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence 55555666555555554 45566666666666553322233446666667777776654443333346667777777777
Q ss_pred CccCCCcCc--ccCCCCCCCEEeccCCcCCccc-ccCccCCCCCCEEEecCCCCCcccCcccCCCCCccEEeccCCCccc
Q 007237 170 GTSITEVPS--SIELLPGLELLNLNDCKNFARV-PSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRR 246 (611)
Q Consensus 170 ~~~i~~l~~--~l~~l~~L~~L~L~~~~~~~~l-p~~i~~l~~L~~L~l~~c~~l~~~p~~l~~l~~L~~L~l~~~~~~~ 246 (611)
+|.++.+|. .+..+++|++|++++|...+.+ +..+..+++|++|++++|......|..++.+++|+.|++++|.+..
T Consensus 133 ~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 212 (353)
T 2z80_A 133 GNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHIL 212 (353)
T ss_dssp TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTT
T ss_pred CCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcccc
Confidence 777777765 5677778888888777544444 4567777888888888877666667777788888888888887776
Q ss_pred CCcccc-ccCCCcEEEcCCCCCCCCCCcccccccccccCCccchhhccCCCCCCCCCCCEEeccCCCCCCC---CCCCCC
Q 007237 247 PPSSVF-LMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEG---AIPSDI 322 (611)
Q Consensus 247 ~~~~~~-~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~---~~~~~l 322 (611)
++.... .+++|+.|++++|....... ..++.....+.++.++++++.+... .+|..+
T Consensus 213 ~~~~~~~~~~~L~~L~L~~n~l~~~~~-------------------~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l 273 (353)
T 2z80_A 213 LLEIFVDVTSSVECLELRDTDLDTFHF-------------------SELSTGETNSLIKKFTFRNVKITDESLFQVMKLL 273 (353)
T ss_dssp HHHHHHHHTTTEEEEEEESCBCTTCCC-------------------C------CCCCCCEEEEESCBCCHHHHHHHHHHH
T ss_pred chhhhhhhcccccEEECCCCccccccc-------------------cccccccccchhhccccccccccCcchhhhHHHH
Confidence 665443 47788888888776321100 0111233456778888888877532 355667
Q ss_pred CCCCCCCEEEcCCCCCCcCCccc-ccCCCcCeeeccccc
Q 007237 323 GNLHSLNELYLSKNNFVTLPASI-NSLLNLKELEMEDCK 360 (611)
Q Consensus 323 ~~l~~L~~L~L~~n~l~~lp~~i-~~l~~L~~L~L~~c~ 360 (611)
..+++|+.|++++|+++.+|..+ ..+++|++|++++|+
T Consensus 274 ~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 274 NQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp HTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred hcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCC
Confidence 78889999999999988888875 788888888888886
No 50
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.90 E-value=4.1e-22 Score=212.48 Aligned_cols=242 Identities=21% Similarity=0.262 Sum_probs=165.5
Q ss_pred cEEEcCCCCccccCccccCCCCCcEEeccCCCCCCCCcccCCCCCCCCEEEecCCCCCcccccccCCCCCCCEEeecCcc
Q 007237 93 QELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTS 172 (611)
Q Consensus 93 ~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~~~~l~~L~~L~L~~~~ 172 (611)
+.++..+.+++.+|..+. ++++.|++++|......+..+.++++|+.|+|++|......+..+.++++|++|++++|.
T Consensus 46 ~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 123 (440)
T 3zyj_A 46 SKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123 (440)
T ss_dssp CEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred CEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence 345555555666665443 456666666654333333456666777777777665555555666777777777777777
Q ss_pred CCCcCc-ccCCCCCCCEEeccCCcCCcccccCccCCCCCCEEEecCCCCCcccCc-ccCCCCCccEEeccCCCcccCCcc
Q 007237 173 ITEVPS-SIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPD-TLGQVESLEELDISETAVRRPPSS 250 (611)
Q Consensus 173 i~~l~~-~l~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~c~~l~~~p~-~l~~l~~L~~L~l~~~~~~~~~~~ 250 (611)
++.++. .+..+++|+.|++++|......+..+..+++|++|++++|..+..++. .+..+++|+.|++++|.+..+|.
T Consensus 124 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~- 202 (440)
T 3zyj_A 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN- 202 (440)
T ss_dssp CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC-
T ss_pred CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc-
Confidence 776665 367777777777777765554455677777777777777766666654 46777888888888887777764
Q ss_pred ccccCCCcEEEcCCCCCCCCCCcccccccccccCCccchhhccCCCCCCCCCCCEEeccCCCCCCCCCCCCCCCCCCCCE
Q 007237 251 VFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNE 330 (611)
Q Consensus 251 ~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~L~~ 330 (611)
+..+++|+.|++++|... ......+.++++|+.|++++|.+. +..+..+..+++|+.
T Consensus 203 ~~~l~~L~~L~Ls~N~l~----------------------~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~ 259 (440)
T 3zyj_A 203 LTPLIKLDELDLSGNHLS----------------------AIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVE 259 (440)
T ss_dssp CTTCSSCCEEECTTSCCC----------------------EECTTTTTTCTTCCEEECTTCCCC-EECTTSSTTCTTCCE
T ss_pred cCCCcccCEEECCCCccC----------------------ccChhhhccCccCCEEECCCCcee-EEChhhhcCCCCCCE
Confidence 667778888888877521 111223677888888888888885 455667888888888
Q ss_pred EEcCCCCCCcCCcc-cccCCCcCeeeccccc
Q 007237 331 LYLSKNNFVTLPAS-INSLLNLKELEMEDCK 360 (611)
Q Consensus 331 L~L~~n~l~~lp~~-i~~l~~L~~L~L~~c~ 360 (611)
|+|++|+++.+|.. +..+++|+.|+|++|+
T Consensus 260 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 260 INLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp EECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred EECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence 88888888877754 5778888888888876
No 51
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.89 E-value=4.7e-22 Score=212.80 Aligned_cols=242 Identities=24% Similarity=0.253 Sum_probs=146.5
Q ss_pred cEEEcCCCCccccCccccCCCCCcEEeccCCCCCCCCcccCCCCCCCCEEEecCCCCCcccccccCCCCCCCEEeecCcc
Q 007237 93 QELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTS 172 (611)
Q Consensus 93 ~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~~~~l~~L~~L~L~~~~ 172 (611)
+.++.++.+++.+|..+. ++|++|++++|......|..+.++++|+.|+|++|......+..+.++++|++|++++|.
T Consensus 57 ~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~ 134 (452)
T 3zyi_A 57 SKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134 (452)
T ss_dssp CEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred cEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence 344444555555554332 355555555544333334445556666666666654444444555666666666666666
Q ss_pred CCCcCcc-cCCCCCCCEEeccCCcCCcccccCccCCCCCCEEEecCCCCCcccCc-ccCCCCCccEEeccCCCcccCCcc
Q 007237 173 ITEVPSS-IELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPD-TLGQVESLEELDISETAVRRPPSS 250 (611)
Q Consensus 173 i~~l~~~-l~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~c~~l~~~p~-~l~~l~~L~~L~l~~~~~~~~~~~ 250 (611)
++.++.. +..+++|++|++++|......+..+..+++|+.|++++|..++.++. .+..+++|+.|++++|.+..+| .
T Consensus 135 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~ 213 (452)
T 3zyi_A 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-N 213 (452)
T ss_dssp CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-C
T ss_pred CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-c
Confidence 6655543 55566666666666655444344566666666666666666655554 3666677777777777666664 3
Q ss_pred ccccCCCcEEEcCCCCCCCCCCcccccccccccCCccchhhccCCCCCCCCCCCEEeccCCCCCCCCCCCCCCCCCCCCE
Q 007237 251 VFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNE 330 (611)
Q Consensus 251 ~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~L~~ 330 (611)
+..+++|+.|++++|.... .....+.++++|+.|++++|.+. +..+..+..+++|+.
T Consensus 214 ~~~l~~L~~L~Ls~N~l~~----------------------~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~ 270 (452)
T 3zyi_A 214 LTPLVGLEELEMSGNHFPE----------------------IRPGSFHGLSSLKKLWVMNSQVS-LIERNAFDGLASLVE 270 (452)
T ss_dssp CTTCTTCCEEECTTSCCSE----------------------ECGGGGTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCE
T ss_pred ccccccccEEECcCCcCcc----------------------cCcccccCccCCCEEEeCCCcCc-eECHHHhcCCCCCCE
Confidence 5566677777777665211 01112566777777788777774 344666777788888
Q ss_pred EEcCCCCCCcCCcc-cccCCCcCeeeccccc
Q 007237 331 LYLSKNNFVTLPAS-INSLLNLKELEMEDCK 360 (611)
Q Consensus 331 L~L~~n~l~~lp~~-i~~l~~L~~L~L~~c~ 360 (611)
|+|++|+++.+|.. +..+++|+.|+|++|+
T Consensus 271 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 271 LNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp EECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred EECCCCcCCccChHHhccccCCCEEEccCCC
Confidence 88888888776653 5667777788777775
No 52
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.89 E-value=4.3e-26 Score=244.78 Aligned_cols=348 Identities=18% Similarity=0.182 Sum_probs=192.2
Q ss_pred CcccEEEccCCCCCCcC-CC-CCCCcccccccccccccccccC-ccccccCccccCCCccEEEecCCcCcCcCCcc-cCC
Q 007237 13 NMLKVMKLSHSENLIKT-PD-FTEAPNLEELYLEGCTKLRKVH-PSLLLHNKLIFVESLKILILSGCLKLRKFPHV-VGS 88 (611)
Q Consensus 13 ~~L~~L~Ls~~~~l~~~-~~-~~~~~~L~~L~L~~c~~l~~i~-~s~~~l~~L~~l~~L~~L~Ls~~~~~~~lp~~-l~~ 88 (611)
++|+.|||++++..... .. +..+++|++|++++|. ++... ..+ ...+..+++|++|++++|.+....+.. ...
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~l--~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 79 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDI--SSALRVNPALAELNLRSNELGDVGVHCVLQG 79 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSC-CCHHHHHHH--HHHHHTCTTCCEEECTTCCCHHHHHHHHHHT
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCC-CCHHHHHHH--HHHHHhCCCcCEEeCCCCcCChHHHHHHHHH
Confidence 56777777776532221 12 5567777777777773 33210 000 012233577777777777655432222 223
Q ss_pred CC----CCcEEEcCCCCcc-----ccCccccCCCCCcEEeccCCCCCCCCcc----c-CCCCCCCCEEEecCCCCCc---
Q 007237 89 ME----CLQELLLDGTDIK-----ELPLSIEHLFGLVQLTLNDCKNLSSLPV----A-ISSFQCLRNLKLSGCSKLK--- 151 (611)
Q Consensus 89 l~----~L~~L~L~~~~i~-----~lp~~~~~l~~L~~L~L~~c~~l~~lp~----~-l~~l~~L~~L~L~~~~~l~--- 151 (611)
++ +|++|++++|.+. .++..+..+++|++|++++|......+. . ....++|++|++++|....
T Consensus 80 l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~ 159 (461)
T 1z7x_W 80 LQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC 159 (461)
T ss_dssp TCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH
T ss_pred HhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHH
Confidence 33 5777777777776 4566777777777777777652211111 1 2224567777777775443
Q ss_pred -ccccccCCCCCCCEEeecCccCCCcC-----ccc-CCCCCCCEEeccCCcCCcc----cccCccCCCCCCEEEecCCCC
Q 007237 152 -KFPQIVTTMEDLSELNLDGTSITEVP-----SSI-ELLPGLELLNLNDCKNFAR----VPSSINGLKSLKTLNLSGCCK 220 (611)
Q Consensus 152 -~~p~~~~~l~~L~~L~L~~~~i~~l~-----~~l-~~l~~L~~L~L~~~~~~~~----lp~~i~~l~~L~~L~l~~c~~ 220 (611)
.++..+..+++|++|++++|.++... ..+ ...++|++|++++|..... ++..+..+++|++|++++|..
T Consensus 160 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 239 (461)
T 1z7x_W 160 EPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL 239 (461)
T ss_dssp HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred HHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcC
Confidence 23455566677777777777765321 111 1345777777777765542 455566677777777777754
Q ss_pred Ccc----c-CcccCCCCCccEEeccCCCccc-----CCccccccCCCcEEEcCCCCCCCCCCcccccccccccCCccchh
Q 007237 221 LEN----V-PDTLGQVESLEELDISETAVRR-----PPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLV 290 (611)
Q Consensus 221 l~~----~-p~~l~~l~~L~~L~l~~~~~~~-----~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (611)
... + +.....+++|+.|++++|.+.. ++..+..+++|++|++++|...... . ...
T Consensus 240 ~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~-~--------------~~l 304 (461)
T 1z7x_W 240 GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEG-A--------------RLL 304 (461)
T ss_dssp HHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHH-H--------------HHH
T ss_pred ChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHH-H--------------HHH
Confidence 322 1 1222356777777777777764 5556666777777777776521000 0 000
Q ss_pred hccCCCCCCCCCCCEEeccCCCCCCCC---CCCCCCCCCCCCEEEcCCCCCCcC-Cccc----cc-CCCcCeeecccccc
Q 007237 291 ALMLPSLSGLRSLTKLDLSDCGLGEGA---IPSDIGNLHSLNELYLSKNNFVTL-PASI----NS-LLNLKELEMEDCKR 361 (611)
Q Consensus 291 ~~~l~~l~~l~~L~~L~Ls~~~l~~~~---~~~~l~~l~~L~~L~L~~n~l~~l-p~~i----~~-l~~L~~L~L~~c~~ 361 (611)
...+ ....++|++|++++|.++... ++..+..+++|++|++++|.+... +..+ .. .++|++|++++|.
T Consensus 305 ~~~l--~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~- 381 (461)
T 1z7x_W 305 CETL--LEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD- 381 (461)
T ss_dssp HHHH--TSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-
T ss_pred HHHh--ccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCC-
Confidence 0000 112346677777777664321 334455566777777777766532 1222 21 5567777777664
Q ss_pred cC-----cCCCC---CCCcceeeecCCC
Q 007237 362 LQ-----FLPQL---PPNIIFVKVNGCS 381 (611)
Q Consensus 362 L~-----~lp~l---p~~L~~L~i~~C~ 381 (611)
+. .+|.. .++|++|++++|+
T Consensus 382 i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 382 VSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp CCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred CChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 22 23221 3566666666653
No 53
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.89 E-value=2.6e-21 Score=213.12 Aligned_cols=256 Identities=25% Similarity=0.286 Sum_probs=156.1
Q ss_pred cccEEEccCCCCCCcCCC-CCCCcccccccccccccccccCccccccCccccCCCccEEEecCCcCcCcCCcccCCCCCC
Q 007237 14 MLKVMKLSHSENLIKTPD-FTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECL 92 (611)
Q Consensus 14 ~L~~L~Ls~~~~l~~~~~-~~~~~~L~~L~L~~c~~l~~i~~s~~~l~~L~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L 92 (611)
+++.|+++++. +..+|. +. ++|+.|++++| .++.+|. .+++|++|+|++|.+. .+|. .+++|
T Consensus 41 ~l~~L~ls~n~-L~~lp~~l~--~~L~~L~L~~N-~l~~lp~---------~l~~L~~L~Ls~N~l~-~lp~---~l~~L 103 (622)
T 3g06_A 41 GNAVLNVGESG-LTTLPDCLP--AHITTLVIPDN-NLTSLPA---------LPPELRTLEVSGNQLT-SLPV---LPPGL 103 (622)
T ss_dssp CCCEEECCSSC-CSCCCSCCC--TTCSEEEECSC-CCSCCCC---------CCTTCCEEEECSCCCS-CCCC---CCTTC
T ss_pred CCcEEEecCCC-cCccChhhC--CCCcEEEecCC-CCCCCCC---------cCCCCCEEEcCCCcCC-cCCC---CCCCC
Confidence 57888888875 345554 32 78888888887 5666664 2577888888887754 4554 66788
Q ss_pred cEEEcCCCCccccCccccCCCCCcEEeccCCCCCCCCcccCCCCCCCCEEEecCCCCCcccccccCCCCCCCEEeecCcc
Q 007237 93 QELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTS 172 (611)
Q Consensus 93 ~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~~~~l~~L~~L~L~~~~ 172 (611)
++|++++|.++.+|. .+++|+.|++++|. +..+|.. +++|++|++++|. +..+|. .+.+|+.|++++|.
T Consensus 104 ~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N~-l~~lp~~---l~~L~~L~Ls~N~-l~~l~~---~~~~L~~L~L~~N~ 172 (622)
T 3g06_A 104 LELSIFSNPLTHLPA---LPSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDNQ-LASLPA---LPSELCKLWAYNNQ 172 (622)
T ss_dssp CEEEECSCCCCCCCC---CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSC
T ss_pred CEEECcCCcCCCCCC---CCCCcCEEECCCCC-CCcCCCC---CCCCCEEECcCCc-CCCcCC---ccCCCCEEECCCCC
Confidence 888888888887776 56778888887754 6666653 4777788887763 334443 24567777777777
Q ss_pred CCCcCcccCCCCCCCEEeccCCcCCcccccCccCCCCCCEEEecCCCCCcccCcccCCCCCccEEeccCCCcccCCcccc
Q 007237 173 ITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVF 252 (611)
Q Consensus 173 i~~l~~~l~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~c~~l~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~ 252 (611)
++.+| ..+++|+.|++++|... .+|.. +++|+.|++++|.. ..+|.. +++|+.|++++|.+..+| .
T Consensus 173 l~~l~---~~~~~L~~L~Ls~N~l~-~l~~~---~~~L~~L~L~~N~l-~~l~~~---~~~L~~L~Ls~N~L~~lp---~ 238 (622)
T 3g06_A 173 LTSLP---MLPSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRL-TSLPAL---PSGLKELIVSGNRLTSLP---V 238 (622)
T ss_dssp CSCCC---CCCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCC-SSCCCC---CTTCCEEECCSSCCSCCC---C
T ss_pred CCCCc---ccCCCCcEEECCCCCCC-CCCCc---cchhhEEECcCCcc-cccCCC---CCCCCEEEccCCccCcCC---C
Confidence 77776 44567777777776543 24432 35666666666533 234432 355666666666666555 2
Q ss_pred ccCCCcEEEcCCCCCCCCCCcccccccccccCCccchhhccCCCCCCCCCCCEEeccCCCCCCCCCCCCCCCCCCCCEEE
Q 007237 253 LMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELY 332 (611)
Q Consensus 253 ~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~ 332 (611)
.+++|+.|++++|... .+|. .+++|+.|++++|.+. .+|..+..+++|+.|+
T Consensus 239 ~l~~L~~L~Ls~N~L~------------------------~lp~--~~~~L~~L~Ls~N~L~--~lp~~l~~l~~L~~L~ 290 (622)
T 3g06_A 239 LPSELKELMVSGNRLT------------------------SLPM--LPSGLLSLSVYRNQLT--RLPESLIHLSSETTVN 290 (622)
T ss_dssp CCTTCCEEECCSSCCS------------------------CCCC--CCTTCCEEECCSSCCC--SCCGGGGGSCTTCEEE
T ss_pred CCCcCcEEECCCCCCC------------------------cCCc--ccccCcEEeCCCCCCC--cCCHHHhhccccCEEE
Confidence 3455555555555311 1111 2345555555555553 3455555555555555
Q ss_pred cCCCCCC
Q 007237 333 LSKNNFV 339 (611)
Q Consensus 333 L~~n~l~ 339 (611)
|++|.++
T Consensus 291 L~~N~l~ 297 (622)
T 3g06_A 291 LEGNPLS 297 (622)
T ss_dssp CCSCCCC
T ss_pred ecCCCCC
Confidence 5555554
No 54
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.89 E-value=3e-22 Score=202.75 Aligned_cols=171 Identities=20% Similarity=0.268 Sum_probs=83.4
Q ss_pred EEEecCCcCcCcCCcccCCCCCCcEEEcCCCCccccCcc-ccCCCCCcEEeccCCCCCCCC---cccCCCCCCCCEEEec
Q 007237 70 ILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLS-IEHLFGLVQLTLNDCKNLSSL---PVAISSFQCLRNLKLS 145 (611)
Q Consensus 70 ~L~Ls~~~~~~~lp~~l~~l~~L~~L~L~~~~i~~lp~~-~~~l~~L~~L~L~~c~~l~~l---p~~l~~l~~L~~L~L~ 145 (611)
.++++++.+ ..+|..+. ++|++|+++++.++.+|.. +.++++|++|++++|. +..+ |..+..+++|++|+++
T Consensus 11 ~l~c~~~~l-~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 11 EIRCNSKGL-TSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNG-LSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp EEECCSSCC-SSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCEEEEEEHHHHSCSCCCEEECC
T ss_pred EEEcCCCCc-ccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCc-cCcccCcccccccccccCEEECC
Confidence 445544332 33343322 4566666666666655543 4555666666665543 2222 3333345555555555
Q ss_pred CCCCCcccccccCCCCCCCEEeecCccCCCcCc--ccCCCCCCCEEeccCCcCCcccccCccCCCCCCEEEecCCCCCc-
Q 007237 146 GCSKLKKFPQIVTTMEDLSELNLDGTSITEVPS--SIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLE- 222 (611)
Q Consensus 146 ~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~l~~--~l~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~c~~l~- 222 (611)
+|. +..+|..+..+++|++|++++|.++.++. .+..+++|++|++++|...+..+..+..+++|++|++++|...+
T Consensus 87 ~n~-i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 165 (306)
T 2z66_A 87 FNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 165 (306)
T ss_dssp SCS-EEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG
T ss_pred CCc-cccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc
Confidence 543 23344445555555555555555554442 34555555555555554444444444445555555555444332
Q ss_pred ccCcccCCCCCccEEeccCCCcc
Q 007237 223 NVPDTLGQVESLEELDISETAVR 245 (611)
Q Consensus 223 ~~p~~l~~l~~L~~L~l~~~~~~ 245 (611)
.+|..++.+++|+.|++++|.+.
T Consensus 166 ~~~~~~~~l~~L~~L~Ls~n~l~ 188 (306)
T 2z66_A 166 FLPDIFTELRNLTFLDLSQCQLE 188 (306)
T ss_dssp EECSCCTTCTTCCEEECTTSCCC
T ss_pred cchhHHhhCcCCCEEECCCCCcC
Confidence 23444444444444444444444
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.89 E-value=2.7e-22 Score=203.11 Aligned_cols=242 Identities=21% Similarity=0.211 Sum_probs=199.2
Q ss_pred cEEEccCCCCCCcCCCCCCCcccccccccccccccccCccccccCccccCCCccEEEecCCcCc--CcCCcccCCCCCCc
Q 007237 16 KVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKL--RKFPHVVGSMECLQ 93 (611)
Q Consensus 16 ~~L~Ls~~~~l~~~~~~~~~~~L~~L~L~~c~~l~~i~~s~~~l~~L~~l~~L~~L~Ls~~~~~--~~lp~~l~~l~~L~ 93 (611)
+.++.+++ .+..+|. ...++|++|+++++ .++.+|..+ +..+++|++|++++|.+. +..+..+..+++|+
T Consensus 10 ~~l~c~~~-~l~~ip~-~~~~~l~~L~L~~n-~l~~i~~~~-----~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~ 81 (306)
T 2z66_A 10 TEIRCNSK-GLTSVPT-GIPSSATRLELESN-KLQSLPHGV-----FDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLK 81 (306)
T ss_dssp TEEECCSS-CCSSCCS-CCCTTCCEEECCSS-CCCCCCTTT-----TTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCC
T ss_pred CEEEcCCC-CcccCCC-CCCCCCCEEECCCC-ccCccCHhH-----hhccccCCEEECCCCccCcccCcccccccccccC
Confidence 46777765 3555654 23478999999987 577777543 234788999999998875 33466677899999
Q ss_pred EEEcCCCCccccCccccCCCCCcEEeccCCCCCCCCc--ccCCCCCCCCEEEecCCCCCcccccccCCCCCCCEEeecCc
Q 007237 94 ELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLP--VAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGT 171 (611)
Q Consensus 94 ~L~L~~~~i~~lp~~~~~l~~L~~L~L~~c~~l~~lp--~~l~~l~~L~~L~L~~~~~l~~~p~~~~~l~~L~~L~L~~~ 171 (611)
+|++++|.+..+|..+..+++|++|++++|. +..++ ..+..+++|++|++++|......+..+..+++|++|++++|
T Consensus 82 ~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 160 (306)
T 2z66_A 82 YLDLSFNGVITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 160 (306)
T ss_dssp EEECCSCSEEEEEEEEETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTC
T ss_pred EEECCCCccccChhhcCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCC
Confidence 9999999999999999999999999999865 45554 35788999999999998877777888899999999999999
Q ss_pred cCCC--cCcccCCCCCCCEEeccCCcCCcccccCccCCCCCCEEEecCCCCCcccCcccCCCCCccEEeccCCCcccC-C
Q 007237 172 SITE--VPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRP-P 248 (611)
Q Consensus 172 ~i~~--l~~~l~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~c~~l~~~p~~l~~l~~L~~L~l~~~~~~~~-~ 248 (611)
.+++ +|..+..+++|+.|++++|...+..|..+..+++|++|++++|......+..+..+++|+.|++++|.+... +
T Consensus 161 ~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 240 (306)
T 2z66_A 161 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 240 (306)
T ss_dssp EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSS
T ss_pred ccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCH
Confidence 9985 788899999999999999988877788899999999999999887666666788999999999999999854 5
Q ss_pred cccccc-CCCcEEEcCCCC
Q 007237 249 SSVFLM-KNLRTLSFSGCN 266 (611)
Q Consensus 249 ~~~~~l-~~L~~L~l~~c~ 266 (611)
..+..+ ++|++|++++|.
T Consensus 241 ~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 241 QELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp SSCCCCCTTCCEEECTTCC
T ss_pred HHHHhhhccCCEEEccCCC
Confidence 566676 499999999987
No 56
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.89 E-value=2.8e-22 Score=200.80 Aligned_cols=201 Identities=19% Similarity=0.224 Sum_probs=141.8
Q ss_pred CCccEEEecCCcCcCcCCcccCCCCCCcEEEcCCCCcccc-CccccCCCCCcEEeccCCCCCCCC-cccCCCCCCCCEEE
Q 007237 66 ESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKEL-PLSIEHLFGLVQLTLNDCKNLSSL-PVAISSFQCLRNLK 143 (611)
Q Consensus 66 ~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~c~~l~~l-p~~l~~l~~L~~L~ 143 (611)
++|++|++++|.+....+..+..+++|++|+++++.++.+ |..+..+++|++|++++|..++.+ |..+..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 4666677776666655556667777777777777777665 556777777777777776545555 45566677777777
Q ss_pred ecCCCCCcccccccCCCCCCCEEeecCccCCCcCcc-cCCCCCCCEEeccCCcCCcccccCccCCCCCCEEEecCCCCCc
Q 007237 144 LSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSS-IELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLE 222 (611)
Q Consensus 144 L~~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~l~~~-l~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~c~~l~ 222 (611)
+++|......+..+..+++|++|++++|.++.++.. ++.+++|+.|++++|......+..+..+++|+.|++++|....
T Consensus 112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 191 (285)
T 1ozn_A 112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191 (285)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred CCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccc
Confidence 777766555566677777777777777777766654 6777777777777776554444457777778888887777666
Q ss_pred ccCcccCCCCCccEEeccCCCcccCCcc-ccccCCCcEEEcCCCC
Q 007237 223 NVPDTLGQVESLEELDISETAVRRPPSS-VFLMKNLRTLSFSGCN 266 (611)
Q Consensus 223 ~~p~~l~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~c~ 266 (611)
..|..++.+++|+.|++++|.+..++.. +..+++|+.|++++|.
T Consensus 192 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred cCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCC
Confidence 6677777778888888888877776643 6667788888888776
No 57
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.89 E-value=2.1e-21 Score=213.75 Aligned_cols=258 Identities=21% Similarity=0.231 Sum_probs=214.2
Q ss_pred cccccccccccccccccCccccccCccccCCCccEEEecCCcCcCcCCcccCCCCCCcEEEcCCCCccccCccccCCCCC
Q 007237 36 PNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGL 115 (611)
Q Consensus 36 ~~L~~L~L~~c~~l~~i~~s~~~l~~L~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L 115 (611)
.+++.|+++++ .++.+|..+. ++|++|++++|.+. .+|. .+++|++|++++|.++.+|. .+++|
T Consensus 40 ~~l~~L~ls~n-~L~~lp~~l~--------~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L 103 (622)
T 3g06_A 40 NGNAVLNVGES-GLTTLPDCLP--------AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTSLPV---LPPGL 103 (622)
T ss_dssp HCCCEEECCSS-CCSCCCSCCC--------TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSCCCC---CCTTC
T ss_pred CCCcEEEecCC-CcCccChhhC--------CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCcCCC---CCCCC
Confidence 46899999986 7888887542 68999999999765 5665 67999999999999999997 77999
Q ss_pred cEEeccCCCCCCCCcccCCCCCCCCEEEecCCCCCcccccccCCCCCCCEEeecCccCCCcCcccCCCCCCCEEeccCCc
Q 007237 116 VQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCK 195 (611)
Q Consensus 116 ~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~l~~~l~~l~~L~~L~L~~~~ 195 (611)
++|++++| .+..+|. .+++|+.|++++|. +..+|.. +++|++|++++|.++.+|.. +++|+.|++++|.
T Consensus 104 ~~L~Ls~N-~l~~l~~---~l~~L~~L~L~~N~-l~~lp~~---l~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~ 172 (622)
T 3g06_A 104 LELSIFSN-PLTHLPA---LPSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDNQLASLPAL---PSELCKLWAYNNQ 172 (622)
T ss_dssp CEEEECSC-CCCCCCC---CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC
T ss_pred CEEECcCC-cCCCCCC---CCCCcCEEECCCCC-CCcCCCC---CCCCCEEECcCCcCCCcCCc---cCCCCEEECCCCC
Confidence 99999986 4677776 47899999999975 5556654 48999999999999998863 5789999999987
Q ss_pred CCcccccCccCCCCCCEEEecCCCCCcccCcccCCCCCccEEeccCCCcccCCccccccCCCcEEEcCCCCCCCCCCccc
Q 007237 196 NFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWH 275 (611)
Q Consensus 196 ~~~~lp~~i~~l~~L~~L~l~~c~~l~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~ 275 (611)
... +| ..+++|+.|++++|.. ..+|.. +++|+.|++++|.+..+|.. +++|+.|++++|...
T Consensus 173 l~~-l~---~~~~~L~~L~Ls~N~l-~~l~~~---~~~L~~L~L~~N~l~~l~~~---~~~L~~L~Ls~N~L~------- 234 (622)
T 3g06_A 173 LTS-LP---MLPSGLQELSVSDNQL-ASLPTL---PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLT------- 234 (622)
T ss_dssp CSC-CC---CCCTTCCEEECCSSCC-SCCCCC---CTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCS-------
T ss_pred CCC-Cc---ccCCCCcEEECCCCCC-CCCCCc---cchhhEEECcCCcccccCCC---CCCCCEEEccCCccC-------
Confidence 654 66 4578999999999864 446543 47899999999999988864 589999999998622
Q ss_pred ccccccccCCccchhhccCCCCCCCCCCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCCcCCcccccCCCcCeee
Q 007237 276 LHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELE 355 (611)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~ 355 (611)
.+| ..+++|+.|++++|.+. .+|. .+++|+.|+|++|+++.+|..+..+++|+.|+
T Consensus 235 -----------------~lp--~~l~~L~~L~Ls~N~L~--~lp~---~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~ 290 (622)
T 3g06_A 235 -----------------SLP--VLPSELKELMVSGNRLT--SLPM---LPSGLLSLSVYRNQLTRLPESLIHLSSETTVN 290 (622)
T ss_dssp -----------------CCC--CCCTTCCEEECCSSCCS--CCCC---CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEE
T ss_pred -----------------cCC--CCCCcCcEEECCCCCCC--cCCc---ccccCcEEeCCCCCCCcCCHHHhhccccCEEE
Confidence 122 35689999999999996 4776 67899999999999999999999999999999
Q ss_pred ccccccc
Q 007237 356 MEDCKRL 362 (611)
Q Consensus 356 L~~c~~L 362 (611)
|++|+..
T Consensus 291 L~~N~l~ 297 (622)
T 3g06_A 291 LEGNPLS 297 (622)
T ss_dssp CCSCCCC
T ss_pred ecCCCCC
Confidence 9999743
No 58
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.89 E-value=7.1e-24 Score=215.92 Aligned_cols=243 Identities=19% Similarity=0.120 Sum_probs=145.2
Q ss_pred CCCccEEEecCCcCcCcCCcccCCCCCCcEEEcCCCCccccCccccCCCCCcEEeccCCCCCCCCcccCCCCCCCCEEEe
Q 007237 65 VESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKL 144 (611)
Q Consensus 65 l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L 144 (611)
+++|++|++++|.+.+..|..+..+++|++|++++|.+..++. +..+++|++|++++|. ++.++. .++|++|++
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~-l~~l~~----~~~L~~L~l 106 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELLV----GPSIETLHA 106 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSE-EEEEEE----CTTCCEEEC
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCc-cccccC----CCCcCEEEC
Confidence 5567777777777666666667777777777777777765554 6666666666666643 333332 355666666
Q ss_pred cCCCCCcccccccCCCCCCCEEeecCccCCCcCcccCCCCCCCEEeccCCcCCcccccCccCCCCCCEEEecCCCCCccc
Q 007237 145 SGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENV 224 (611)
Q Consensus 145 ~~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~l~~~l~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~c~~l~~~ 224 (611)
++|......+. .+++|++|++++|.++.+ .+..+..+++|++|++++|......
T Consensus 107 ~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~-----------------------~~~~~~~l~~L~~L~Ls~N~l~~~~ 160 (317)
T 3o53_A 107 ANNNISRVSCS---RGQGKKNIYLANNKITML-----------------------RDLDEGCRSRVQYLDLKLNEIDTVN 160 (317)
T ss_dssp CSSCCSEEEEC---CCSSCEEEECCSSCCCSG-----------------------GGBCTGGGSSEEEEECTTSCCCEEE
T ss_pred CCCccCCcCcc---ccCCCCEEECCCCCCCCc-----------------------cchhhhccCCCCEEECCCCCCCccc
Confidence 55443322221 234455555555555444 3334444444444444444433333
Q ss_pred Cccc-CCCCCccEEeccCCCcccCCccccccCCCcEEEcCCCCCCCCCCcccccccccccCCccchhhccCCCCCCCCCC
Q 007237 225 PDTL-GQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSL 303 (611)
Q Consensus 225 p~~l-~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L 303 (611)
+..+ ..+++|+.|++++|.+..++... .+++|++|++++|.... ..+.+..+++|
T Consensus 161 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~l~~L~~L~Ls~N~l~~-----------------------l~~~~~~l~~L 216 (317)
T 3o53_A 161 FAELAASSDTLEHLNLQYNFIYDVKGQV-VFAKLKTLDLSSNKLAF-----------------------MGPEFQSAAGV 216 (317)
T ss_dssp GGGGGGGTTTCCEEECTTSCCCEEECCC-CCTTCCEEECCSSCCCE-----------------------ECGGGGGGTTC
T ss_pred HHHHhhccCcCCEEECCCCcCccccccc-ccccCCEEECCCCcCCc-----------------------chhhhcccCcc
Confidence 3332 23455555555555554443222 25555555555554110 01124456677
Q ss_pred CEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCC--cCCcccccCCCcCeeecccccccCcC
Q 007237 304 TKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFV--TLPASINSLLNLKELEMEDCKRLQFL 365 (611)
Q Consensus 304 ~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~--~lp~~i~~l~~L~~L~L~~c~~L~~l 365 (611)
+.|++++|.+. .+|..+..+++|+.|++++|.+. .+|..+..+++|+.|++.+++.++..
T Consensus 217 ~~L~L~~N~l~--~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 217 TWISLRNNKLV--LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp SEEECTTSCCC--EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSS
T ss_pred cEEECcCCccc--chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCC
Confidence 78888888775 47888888999999999999988 77888899999999999988776643
No 59
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.89 E-value=3.2e-26 Score=245.78 Aligned_cols=331 Identities=19% Similarity=0.216 Sum_probs=236.1
Q ss_pred ccCCCcccEEEccCCCCCCc----CC-CCCCCccccccccccccccccc-CccccccCccccC-CCccEEEecCCcCcC-
Q 007237 9 QQHLNMLKVMKLSHSENLIK----TP-DFTEAPNLEELYLEGCTKLRKV-HPSLLLHNKLIFV-ESLKILILSGCLKLR- 80 (611)
Q Consensus 9 ~~~l~~L~~L~Ls~~~~l~~----~~-~~~~~~~L~~L~L~~c~~l~~i-~~s~~~l~~L~~l-~~L~~L~Ls~~~~~~- 80 (611)
+..+++|++|+|++|..... ++ .+..+++|++|+|++|. ++.. +..+.. .+... ++|++|++++|.+..
T Consensus 24 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~--~l~~~~~~L~~L~L~~n~i~~~ 100 (461)
T 1z7x_W 24 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQ--GLQTPSCKIQKLSLQNCCLTGA 100 (461)
T ss_dssp HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHH--TTCSTTCCCCEEECTTSCCBGG
T ss_pred HhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCc-CChHHHHHHHH--HHhhCCCceeEEEccCCCCCHH
Confidence 56788999999999974321 22 36678999999999973 4432 111211 11111 279999999998773
Q ss_pred ---cCCcccCCCCCCcEEEcCCCCcccc-----Ccc-ccCCCCCcEEeccCCCCCCC----CcccCCCCCCCCEEEecCC
Q 007237 81 ---KFPHVVGSMECLQELLLDGTDIKEL-----PLS-IEHLFGLVQLTLNDCKNLSS----LPVAISSFQCLRNLKLSGC 147 (611)
Q Consensus 81 ---~lp~~l~~l~~L~~L~L~~~~i~~l-----p~~-~~~l~~L~~L~L~~c~~l~~----lp~~l~~l~~L~~L~L~~~ 147 (611)
.++..+..+++|++|++++|.+... ... ....++|++|++++|..... ++..+..+++|++|++++|
T Consensus 101 ~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n 180 (461)
T 1z7x_W 101 GCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN 180 (461)
T ss_dssp GHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSS
T ss_pred HHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCC
Confidence 5688899999999999999998732 222 22356899999999864332 3555667899999999998
Q ss_pred CCCcccccccC-----CCCCCCEEeecCccCCC-----cCcccCCCCCCCEEeccCCcCCccc-----ccCccCCCCCCE
Q 007237 148 SKLKKFPQIVT-----TMEDLSELNLDGTSITE-----VPSSIELLPGLELLNLNDCKNFARV-----PSSINGLKSLKT 212 (611)
Q Consensus 148 ~~l~~~p~~~~-----~l~~L~~L~L~~~~i~~-----l~~~l~~l~~L~~L~L~~~~~~~~l-----p~~i~~l~~L~~ 212 (611)
......+..+. ..++|++|++++|.++. ++..+..+++|++|++++|...... +.....+++|++
T Consensus 181 ~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~ 260 (461)
T 1z7x_W 181 DINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRT 260 (461)
T ss_dssp BCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCE
T ss_pred CcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceE
Confidence 75443333222 36689999999999986 5667788999999999998754332 222346889999
Q ss_pred EEecCCCCCcc----cCcccCCCCCccEEeccCCCcccC-Ccccc-----ccCCCcEEEcCCCCCCCCCCcccccccccc
Q 007237 213 LNLSGCCKLEN----VPDTLGQVESLEELDISETAVRRP-PSSVF-----LMKNLRTLSFSGCNGPPSSASWHLHLPFNL 282 (611)
Q Consensus 213 L~l~~c~~l~~----~p~~l~~l~~L~~L~l~~~~~~~~-~~~~~-----~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~ 282 (611)
|++++|..... ++..+..+++|+.|++++|.+... +..+. ..++|++|++++|.....
T Consensus 261 L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~------------ 328 (461)
T 1z7x_W 261 LWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAA------------ 328 (461)
T ss_dssp EECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG------------
T ss_pred EECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchH------------
Confidence 99999965543 677777899999999999988632 11222 236999999999872110
Q ss_pred cCCccchhhccCCCCCCCCCCCEEeccCCCCCCCCCC---CCCC-CCCCCCEEEcCCCCCC-----cCCcccccCCCcCe
Q 007237 283 MGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIP---SDIG-NLHSLNELYLSKNNFV-----TLPASINSLLNLKE 353 (611)
Q Consensus 283 ~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~~---~~l~-~l~~L~~L~L~~n~l~-----~lp~~i~~l~~L~~ 353 (611)
........+..+++|++|++++|.+.+.... ..+. ..++|+.|++++|.++ .+|..+..+++|++
T Consensus 329 ------~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~ 402 (461)
T 1z7x_W 329 ------CCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRE 402 (461)
T ss_dssp ------GHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCE
T ss_pred ------HHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccE
Confidence 0000111245678999999999988642211 2222 2679999999999998 68888999999999
Q ss_pred eeccccc
Q 007237 354 LEMEDCK 360 (611)
Q Consensus 354 L~L~~c~ 360 (611)
|++++|+
T Consensus 403 L~l~~N~ 409 (461)
T 1z7x_W 403 LDLSNNC 409 (461)
T ss_dssp EECCSSS
T ss_pred EECCCCC
Confidence 9999996
No 60
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.88 E-value=8.1e-23 Score=211.38 Aligned_cols=276 Identities=19% Similarity=0.181 Sum_probs=171.4
Q ss_pred CcccccccccccccccccCccccccCccccCCCccEEEecCCcCcCcCCcccCCCCCCcEEEcCCCCccccC-ccccCCC
Q 007237 35 APNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELP-LSIEHLF 113 (611)
Q Consensus 35 ~~~L~~L~L~~c~~l~~i~~s~~~l~~L~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~L~~~~i~~lp-~~~~~l~ 113 (611)
|+.....+.+++ .++.+|..+ .++|++|++++|.+.+..+..+.++++|++|++++|.++.++ ..+..++
T Consensus 30 C~~~~~c~~~~~-~l~~iP~~~--------~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 100 (353)
T 2z80_A 30 CDRNGICKGSSG-SLNSIPSGL--------TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLG 100 (353)
T ss_dssp ECTTSEEECCST-TCSSCCTTC--------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred CCCCeEeeCCCC-Ccccccccc--------cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCC
Confidence 444444455443 555555432 245666666666655544446666666666666666666553 3466666
Q ss_pred CCcEEeccCCCCCCCCccc-CCCCCCCCEEEecCCCCCccccc--ccCCCCCCCEEeecCc-cCCCcC-cccCCCCCCCE
Q 007237 114 GLVQLTLNDCKNLSSLPVA-ISSFQCLRNLKLSGCSKLKKFPQ--IVTTMEDLSELNLDGT-SITEVP-SSIELLPGLEL 188 (611)
Q Consensus 114 ~L~~L~L~~c~~l~~lp~~-l~~l~~L~~L~L~~~~~l~~~p~--~~~~l~~L~~L~L~~~-~i~~l~-~~l~~l~~L~~ 188 (611)
+|++|++++|. ++.+|.. +.++++|++|++++|... .+|. .+..+++|++|++++| .+..++ ..+..+++|+.
T Consensus 101 ~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~ 178 (353)
T 2z80_A 101 SLEHLDLSYNY-LSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEE 178 (353)
T ss_dssp TCCEEECCSSC-CSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEE
T ss_pred CCCEEECCCCc-CCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCE
Confidence 67777776643 4444443 566667777777665433 3443 5666677777777766 355543 34667777777
Q ss_pred EeccCCcCCcccccCccCCCCCCEEEecCCCCCcccCcc-cCCCCCccEEeccCCCcccCCcc----ccccCCCcEEEcC
Q 007237 189 LNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDT-LGQVESLEELDISETAVRRPPSS----VFLMKNLRTLSFS 263 (611)
Q Consensus 189 L~L~~~~~~~~lp~~i~~l~~L~~L~l~~c~~l~~~p~~-l~~l~~L~~L~l~~~~~~~~~~~----~~~l~~L~~L~l~ 263 (611)
|++++|...+..|..+..+++|++|++++|.. ..+|.. +..+++|+.|++++|.+...+.. ......++.+++.
T Consensus 179 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l-~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~ 257 (353)
T 2z80_A 179 LEIDASDLQSYEPKSLKSIQNVSHLILHMKQH-ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFR 257 (353)
T ss_dssp EEEEETTCCEECTTTTTTCSEEEEEEEECSCS-TTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEE
T ss_pred EECCCCCcCccCHHHHhccccCCeecCCCCcc-ccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccc
Confidence 77777776666677777777777777777654 333332 34467777777777777654321 2235567777777
Q ss_pred CCCCCCCCCcccccccccccCCccchhhccCCCCCCCCCCCEEeccCCCCCCCCCCCC-CCCCCCCCEEEcCCCCCCcCC
Q 007237 264 GCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSD-IGNLHSLNELYLSKNNFVTLP 342 (611)
Q Consensus 264 ~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~~~~-l~~l~~L~~L~L~~n~l~~lp 342 (611)
++... ........+.+..+++|+.|++++|++. .+|.. +..+++|++|++++|.+...+
T Consensus 258 ~~~l~------------------~~~l~~l~~~l~~l~~L~~L~Ls~N~l~--~i~~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 258 NVKIT------------------DESLFQVMKLLNQISGLLELEFSRNQLK--SVPDGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp SCBCC------------------HHHHHHHHHHHHTCTTCCEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred ccccc------------------CcchhhhHHHHhcccCCCEEECCCCCCC--ccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence 65411 0000011122567889999999999996 47766 489999999999999887543
No 61
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.88 E-value=2.6e-21 Score=206.99 Aligned_cols=242 Identities=21% Similarity=0.240 Sum_probs=206.2
Q ss_pred ccEEEccCCCCCCcCCCCCCCcccccccccccccccccCccccccCccccCCCccEEEecCCcCcCcCCcccCCCCCCcE
Q 007237 15 LKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQE 94 (611)
Q Consensus 15 L~~L~Ls~~~~l~~~~~~~~~~~L~~L~L~~c~~l~~i~~s~~~l~~L~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~ 94 (611)
.+.++.++. .+..+|. .-.++|+.|+|+++ .++.+++. .+..+++|++|+|++|.+.+..+..+..+++|++
T Consensus 56 ~~~v~c~~~-~l~~iP~-~~~~~l~~L~L~~n-~i~~~~~~-----~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 127 (452)
T 3zyi_A 56 FSKVVCTRR-GLSEVPQ-GIPSNTRYLNLMEN-NIQMIQAD-----TFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNT 127 (452)
T ss_dssp SCEEECCSS-CCSSCCS-CCCTTCSEEECCSS-CCCEECTT-----TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred CcEEEECCC-CcCccCC-CCCCCccEEECcCC-cCceECHH-----HcCCCCCCCEEECCCCccCCcChhhccCcccCCE
Confidence 456776654 4555663 12379999999997 56666432 2334889999999999988888899999999999
Q ss_pred EEcCCCCccccCcc-ccCCCCCcEEeccCCCCCCCCcc-cCCCCCCCCEEEecCCCCCccccc-ccCCCCCCCEEeecCc
Q 007237 95 LLLDGTDIKELPLS-IEHLFGLVQLTLNDCKNLSSLPV-AISSFQCLRNLKLSGCSKLKKFPQ-IVTTMEDLSELNLDGT 171 (611)
Q Consensus 95 L~L~~~~i~~lp~~-~~~l~~L~~L~L~~c~~l~~lp~-~l~~l~~L~~L~L~~~~~l~~~p~-~~~~l~~L~~L~L~~~ 171 (611)
|++++|.++.+|.. +..+++|++|++++|. +..+|. .+.++++|+.|++++|..++.++. .+..+++|++|++++|
T Consensus 128 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n 206 (452)
T 3zyi_A 128 LELFDNWLTVIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC 206 (452)
T ss_dssp EECCSSCCSBCCTTTSSSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS
T ss_pred EECCCCcCCccChhhhcccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC
Confidence 99999999998865 8889999999999976 555554 588899999999999888887765 5889999999999999
Q ss_pred cCCCcCcccCCCCCCCEEeccCCcCCcccccCccCCCCCCEEEecCCCCCcccCcccCCCCCccEEeccCCCcccCCcc-
Q 007237 172 SITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSS- 250 (611)
Q Consensus 172 ~i~~l~~~l~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~c~~l~~~p~~l~~l~~L~~L~l~~~~~~~~~~~- 250 (611)
.++.+| .+..+++|+.|++++|...+..|..+..+++|+.|++++|......+..+..+++|+.|++++|.+..++..
T Consensus 207 ~l~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 285 (452)
T 3zyi_A 207 NIKDMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDL 285 (452)
T ss_dssp CCSSCC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTS
T ss_pred cccccc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHH
Confidence 999987 478899999999999998888899999999999999999988877788899999999999999999988754
Q ss_pred ccccCCCcEEEcCCCC
Q 007237 251 VFLMKNLRTLSFSGCN 266 (611)
Q Consensus 251 ~~~l~~L~~L~l~~c~ 266 (611)
+..+++|+.|++++|.
T Consensus 286 ~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 286 FTPLRYLVELHLHHNP 301 (452)
T ss_dssp STTCTTCCEEECCSSC
T ss_pred hccccCCCEEEccCCC
Confidence 5679999999999986
No 62
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.88 E-value=2.9e-21 Score=205.93 Aligned_cols=243 Identities=21% Similarity=0.247 Sum_probs=206.1
Q ss_pred cccEEEccCCCCCCcCCCCCCCcccccccccccccccccCccccccCccccCCCccEEEecCCcCcCcCCcccCCCCCCc
Q 007237 14 MLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQ 93 (611)
Q Consensus 14 ~L~~L~Ls~~~~l~~~~~~~~~~~L~~L~L~~c~~l~~i~~s~~~l~~L~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~ 93 (611)
..+.++.++. .+..+|. .-.++++.|+|+++ .++.++.. .+..+++|++|+|++|.+....+..+..+++|+
T Consensus 44 ~~~~v~c~~~-~l~~iP~-~~~~~l~~L~L~~n-~i~~~~~~-----~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~ 115 (440)
T 3zyj_A 44 QFSKVICVRK-NLREVPD-GISTNTRLLNLHEN-QIQIIKVN-----SFKHLRHLEILQLSRNHIRTIEIGAFNGLANLN 115 (440)
T ss_dssp TSCEEECCSC-CCSSCCS-CCCTTCSEEECCSC-CCCEECTT-----TTSSCSSCCEEECCSSCCCEECGGGGTTCSSCC
T ss_pred CCCEEEeCCC-CcCcCCC-CCCCCCcEEEccCC-cCCeeCHH-----HhhCCCCCCEEECCCCcCCccChhhccCCccCC
Confidence 3456666654 4556664 22378999999997 56666542 234588999999999998887788999999999
Q ss_pred EEEcCCCCccccCc-cccCCCCCcEEeccCCCCCCCCc-ccCCCCCCCCEEEecCCCCCccccc-ccCCCCCCCEEeecC
Q 007237 94 ELLLDGTDIKELPL-SIEHLFGLVQLTLNDCKNLSSLP-VAISSFQCLRNLKLSGCSKLKKFPQ-IVTTMEDLSELNLDG 170 (611)
Q Consensus 94 ~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~c~~l~~lp-~~l~~l~~L~~L~L~~~~~l~~~p~-~~~~l~~L~~L~L~~ 170 (611)
+|++++|.++.+|. .+..+++|++|++++|. +..+| ..+.++++|++|++++|..+..++. .+.++++|++|++++
T Consensus 116 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~ 194 (440)
T 3zyj_A 116 TLELFDNRLTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAM 194 (440)
T ss_dssp EEECCSSCCSSCCTTTSCSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTT
T ss_pred EEECCCCcCCeeCHhHhhccccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCC
Confidence 99999999999886 68999999999999976 55555 4688899999999999888877765 688999999999999
Q ss_pred ccCCCcCcccCCCCCCCEEeccCCcCCcccccCccCCCCCCEEEecCCCCCcccCcccCCCCCccEEeccCCCcccCCcc
Q 007237 171 TSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSS 250 (611)
Q Consensus 171 ~~i~~l~~~l~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~c~~l~~~p~~l~~l~~L~~L~l~~~~~~~~~~~ 250 (611)
|.++.+|. +..+++|+.|++++|...+..|..+..+++|+.|++++|......+..+..+++|+.|++++|.+..++..
T Consensus 195 n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 273 (440)
T 3zyj_A 195 CNLREIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHD 273 (440)
T ss_dssp SCCSSCCC-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTT
T ss_pred CcCccccc-cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChh
Confidence 99999885 78899999999999988888888999999999999999988877788899999999999999999988765
Q ss_pred -ccccCCCcEEEcCCCC
Q 007237 251 -VFLMKNLRTLSFSGCN 266 (611)
Q Consensus 251 -~~~l~~L~~L~l~~c~ 266 (611)
+..+++|+.|++++|.
T Consensus 274 ~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 274 LFTPLHHLERIHLHHNP 290 (440)
T ss_dssp TTSSCTTCCEEECCSSC
T ss_pred HhccccCCCEEEcCCCC
Confidence 4679999999999986
No 63
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.87 E-value=1.4e-23 Score=213.11 Aligned_cols=199 Identities=23% Similarity=0.276 Sum_probs=117.6
Q ss_pred CCCCCEEEecCCCCCccccccc--CCCCCCCEEeecCccCCCcCcccCCC-----CCCCEEeccCCcCCcccccCccCCC
Q 007237 136 FQCLRNLKLSGCSKLKKFPQIV--TTMEDLSELNLDGTSITEVPSSIELL-----PGLELLNLNDCKNFARVPSSINGLK 208 (611)
Q Consensus 136 l~~L~~L~L~~~~~l~~~p~~~--~~l~~L~~L~L~~~~i~~l~~~l~~l-----~~L~~L~L~~~~~~~~lp~~i~~l~ 208 (611)
+++|++|++++|...+..|..+ ..+++|++|++++|.++.+|..++.+ ++|++|++++|...+..|..+..++
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~ 173 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP 173 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCC
Confidence 4444444444444333444433 44455555555555554444433333 5555555555554444445555555
Q ss_pred CCCEEEecCCCCCcc--cCccc--CCCCCccEEeccCCCcccCCc---c-ccccCCCcEEEcCCCCCCCCCCcccccccc
Q 007237 209 SLKTLNLSGCCKLEN--VPDTL--GQVESLEELDISETAVRRPPS---S-VFLMKNLRTLSFSGCNGPPSSASWHLHLPF 280 (611)
Q Consensus 209 ~L~~L~l~~c~~l~~--~p~~l--~~l~~L~~L~l~~~~~~~~~~---~-~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~ 280 (611)
+|++|++++|...+. ++..+ +.+++|+.|++++|.+..++. . +..+++|++|++++|......
T Consensus 174 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--------- 244 (312)
T 1wwl_A 174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAA--------- 244 (312)
T ss_dssp SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSC---------
T ss_pred CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCccc---------
Confidence 555555555554332 22222 556666666666666653322 1 234567777777776522110
Q ss_pred cccCCccchhhccCCCCCCCCCCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCCcCCcccccCCCcCeeeccccc
Q 007237 281 NLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCK 360 (611)
Q Consensus 281 ~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~ 360 (611)
..+.+..+++|+.|++++|.+. .+|..+. ++|+.|++++|+++.+|. +..+++|++|++++++
T Consensus 245 ------------~~~~~~~l~~L~~L~Ls~N~l~--~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 245 ------------GAPSCDWPSQLNSLNLSFTGLK--QVPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp ------------CCSCCCCCTTCCEEECTTSCCS--SCCSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCT
T ss_pred ------------chhhhhhcCCCCEEECCCCccC--hhhhhcc--CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCC
Confidence 1223556788889999998885 5777766 889999999999988876 8888999999998886
No 64
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.87 E-value=6.9e-21 Score=190.68 Aligned_cols=63 Identities=32% Similarity=0.470 Sum_probs=45.2
Q ss_pred CCCCCCCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCCcCCc-ccccCCCcCeeeccccc
Q 007237 297 LSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPA-SINSLLNLKELEMEDCK 360 (611)
Q Consensus 297 l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~-~i~~l~~L~~L~L~~c~ 360 (611)
+..+++|+.|++++|.+. +..|..+..+++|+.|++++|+++.+|. .+..+++|++|++++|+
T Consensus 173 ~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 173 FRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp TTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred hcCccccCEEECCCCccc-ccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCC
Confidence 455667777777777764 3446677777888888888888777664 47777788888877775
No 65
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.87 E-value=1.1e-22 Score=206.50 Aligned_cols=249 Identities=20% Similarity=0.176 Sum_probs=199.6
Q ss_pred ccCCCcccEEEccCCCCCCcCCC-CCCCcccccccccccccccc--cCcccc-ccCccccCCCccEEEecCCcCcCcCCc
Q 007237 9 QQHLNMLKVMKLSHSENLIKTPD-FTEAPNLEELYLEGCTKLRK--VHPSLL-LHNKLIFVESLKILILSGCLKLRKFPH 84 (611)
Q Consensus 9 ~~~l~~L~~L~Ls~~~~l~~~~~-~~~~~~L~~L~L~~c~~l~~--i~~s~~-~l~~L~~l~~L~~L~Ls~~~~~~~lp~ 84 (611)
....++|+.|++++|.. .+|. +.. .|+.|+|+++ .++. ++..++ ..-....+++|++|++++|.+.+.+|.
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~--~L~~L~L~~n-~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 113 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTD--IIKSLSLKRL-TVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP 113 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHH--HHHHCCCCEE-EEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred EccCCCceeEeeccccc--ccHHHHHH--HHhhcccccc-cccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence 34556788889998876 4443 332 3999999987 3432 333222 000111378999999999999998998
Q ss_pred cc--CCCCCCcEEEcCCCCccccCccccCC-----CCCcEEeccCCCCCCCCcccCCCCCCCCEEEecCCCCCcc--ccc
Q 007237 85 VV--GSMECLQELLLDGTDIKELPLSIEHL-----FGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKK--FPQ 155 (611)
Q Consensus 85 ~l--~~l~~L~~L~L~~~~i~~lp~~~~~l-----~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~~l~~--~p~ 155 (611)
.+ ..+++|++|++++|.++.+|..++.+ ++|++|++++|......|..++++++|++|++++|...+. ++.
T Consensus 114 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 193 (312)
T 1wwl_A 114 PLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS 193 (312)
T ss_dssp CSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHH
T ss_pred HHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHH
Confidence 76 89999999999999999889888877 9999999999876555557899999999999999987654 344
Q ss_pred cc--CCCCCCCEEeecCccCCCcCc---c-cCCCCCCCEEeccCCcCCcccc-cCccCCCCCCEEEecCCCCCcccCccc
Q 007237 156 IV--TTMEDLSELNLDGTSITEVPS---S-IELLPGLELLNLNDCKNFARVP-SSINGLKSLKTLNLSGCCKLENVPDTL 228 (611)
Q Consensus 156 ~~--~~l~~L~~L~L~~~~i~~l~~---~-l~~l~~L~~L~L~~~~~~~~lp-~~i~~l~~L~~L~l~~c~~l~~~p~~l 228 (611)
.+ ..+++|++|++++|.++.++. . +..+++|+.|++++|...+..| ..+..+++|++|++++|... .+|..+
T Consensus 194 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~ 272 (312)
T 1wwl_A 194 ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL 272 (312)
T ss_dssp HSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSC
T ss_pred HHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhc
Confidence 44 889999999999999995543 2 4578999999999998877665 45667899999999998765 888877
Q ss_pred CCCCCccEEeccCCCcccCCccccccCCCcEEEcCCCC
Q 007237 229 GQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCN 266 (611)
Q Consensus 229 ~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~c~ 266 (611)
. ++|+.|++++|.+..+|. +..+++|++|++++|.
T Consensus 273 ~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 273 P--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp C--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCT
T ss_pred c--CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCC
Confidence 6 899999999999999977 8899999999999987
No 66
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.85 E-value=6e-24 Score=235.51 Aligned_cols=81 Identities=16% Similarity=0.134 Sum_probs=38.9
Q ss_pred CCCCCEEeccCCC--CCCCCCCCCCCCCCCCCEEEcCCCCCC--cCCcccccCCCcCeeecccccccCc--CCC---CCC
Q 007237 300 LRSLTKLDLSDCG--LGEGAIPSDIGNLHSLNELYLSKNNFV--TLPASINSLLNLKELEMEDCKRLQF--LPQ---LPP 370 (611)
Q Consensus 300 l~~L~~L~Ls~~~--l~~~~~~~~l~~l~~L~~L~L~~n~l~--~lp~~i~~l~~L~~L~L~~c~~L~~--lp~---lp~ 370 (611)
+++|++|++++|. +++..+......+++|+.|++++|+++ .++..+..+++|++|+|++|+ +.. ++. -.+
T Consensus 435 ~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~ 513 (592)
T 3ogk_B 435 CKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLP 513 (592)
T ss_dssp CTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCS
T ss_pred CCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcC
Confidence 4555666655443 322111111123555666666666554 344444556666666666665 211 111 124
Q ss_pred CcceeeecCCC
Q 007237 371 NIIFVKVNGCS 381 (611)
Q Consensus 371 ~L~~L~i~~C~ 381 (611)
+|++|++++|.
T Consensus 514 ~L~~L~ls~n~ 524 (592)
T 3ogk_B 514 SLRYLWVQGYR 524 (592)
T ss_dssp SCCEEEEESCB
T ss_pred ccCeeECcCCc
Confidence 56666666665
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.85 E-value=4.4e-21 Score=195.19 Aligned_cols=258 Identities=15% Similarity=0.112 Sum_probs=182.1
Q ss_pred CcEEEcCCCCccccCcc-ccCCCCCcEEeccCCCCCCCCcccCCCCCCCCEEEecCCCCCcccccccCCCCCCCEEeecC
Q 007237 92 LQELLLDGTDIKELPLS-IEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDG 170 (611)
Q Consensus 92 L~~L~L~~~~i~~lp~~-~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~~~~l~~L~~L~L~~ 170 (611)
++.++++.+.+.+.+.. +..+++|++|++++|......|..+.++++|++|++++|...+..+ +..+++|++|++++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence 34444555555433322 2345566677776654433334556667777777777765443332 67777888888888
Q ss_pred ccCCCcCcccCCCCCCCEEeccCCcCCcccccCccCCCCCCEEEecCCCCCcccCcccCCCCCccEEeccCCCcccCC-c
Q 007237 171 TSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPP-S 249 (611)
Q Consensus 171 ~~i~~l~~~l~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~c~~l~~~p~~l~~l~~L~~L~l~~~~~~~~~-~ 249 (611)
|.+++++. .++|+.|++++|...+..+. .+++|++|++++|......+..++.+++|+.|++++|.+..++ .
T Consensus 90 n~l~~l~~----~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 162 (317)
T 3o53_A 90 NYVQELLV----GPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA 162 (317)
T ss_dssp SEEEEEEE----CTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGG
T ss_pred CccccccC----CCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHH
Confidence 87776653 37888888888876655443 3678999999998877766778888999999999999998654 3
Q ss_pred cc-cccCCCcEEEcCCCCCCCCCCcccccccccccCCccchhhccCCCCCCCCCCCEEeccCCCCCCCCCCCCCCCCCCC
Q 007237 250 SV-FLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSL 328 (611)
Q Consensus 250 ~~-~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~L 328 (611)
.+ ..+++|++|++++|... .++....+++|+.|++++|.+. .+|..+..+++|
T Consensus 163 ~~~~~l~~L~~L~L~~N~l~------------------------~~~~~~~l~~L~~L~Ls~N~l~--~l~~~~~~l~~L 216 (317)
T 3o53_A 163 ELAASSDTLEHLNLQYNFIY------------------------DVKGQVVFAKLKTLDLSSNKLA--FMGPEFQSAAGV 216 (317)
T ss_dssp GGGGGTTTCCEEECTTSCCC------------------------EEECCCCCTTCCEEECCSSCCC--EECGGGGGGTTC
T ss_pred HHhhccCcCCEEECCCCcCc------------------------ccccccccccCCEEECCCCcCC--cchhhhcccCcc
Confidence 34 46899999999998732 1133445889999999999995 477778999999
Q ss_pred CEEEcCCCCCCcCCcccccCCCcCeeeccccccc-CcCCCC---CCCcceeeecCCCCcc
Q 007237 329 NELYLSKNNFVTLPASINSLLNLKELEMEDCKRL-QFLPQL---PPNIIFVKVNGCSSLV 384 (611)
Q Consensus 329 ~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L-~~lp~l---p~~L~~L~i~~C~sL~ 384 (611)
+.|++++|.++.+|..+..+++|+.|++++|+.. ..++.. .+.|+.|++.++..++
T Consensus 217 ~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~ 276 (317)
T 3o53_A 217 TWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLT 276 (317)
T ss_dssp SEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred cEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhcc
Confidence 9999999999999999999999999999998744 222221 2334455555444443
No 68
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.84 E-value=1.2e-23 Score=233.07 Aligned_cols=345 Identities=15% Similarity=0.123 Sum_probs=195.9
Q ss_pred CCCcccEEEccCCCCCCcC-CCCCC-Ccc-cccccccccccccccCccccccCccccCCCccEEEecCCcCcCc----CC
Q 007237 11 HLNMLKVMKLSHSENLIKT-PDFTE-APN-LEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRK----FP 83 (611)
Q Consensus 11 ~l~~L~~L~Ls~~~~l~~~-~~~~~-~~~-L~~L~L~~c~~l~~i~~s~~~l~~L~~l~~L~~L~Ls~~~~~~~----lp 83 (611)
.+++|+.|+|++|...... ..+.. +++ |++|+|++|..+... .+.. ....+++|++|+|++|.+.+. ++
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~--~l~~--~~~~~~~L~~L~L~~~~~~~~~~~~l~ 185 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTD--GLLS--IVTHCRKIKTLLMEESSFSEKDGKWLH 185 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHH--HHHH--HHHHCTTCSEEECTTCEEECCCSHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHH--HHHH--HHhhCCCCCEEECccccccCcchhHHH
Confidence 7899999999988532221 22333 445 999999888643321 1100 112367777777777765443 33
Q ss_pred cccCCCCCCcEEEcCCCCcc-----ccCccccCCCCCcEEeccCCCCCCCCcccCCCCCCCCEEEecCCC----------
Q 007237 84 HVVGSMECLQELLLDGTDIK-----ELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCS---------- 148 (611)
Q Consensus 84 ~~l~~l~~L~~L~L~~~~i~-----~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~---------- 148 (611)
.....+++|++|+++++.+. .++..+.++++|++|++++|. +..+|..+..+++|+.|+++++.
T Consensus 186 ~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 264 (592)
T 3ogk_B 186 ELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYM 264 (592)
T ss_dssp HHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSS
T ss_pred HHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHHHhhhhHHHhhcccccccccchHHHHH
Confidence 34455666666666666654 334445556666666666643 23344334444444444444221
Q ss_pred ----------------CCcccccccCCCCCCCEEeecCccCCC--cCcccCCCCCCCEEeccCCcCCcccccCccCCCCC
Q 007237 149 ----------------KLKKFPQIVTTMEDLSELNLDGTSITE--VPSSIELLPGLELLNLNDCKNFARVPSSINGLKSL 210 (611)
Q Consensus 149 ----------------~l~~~p~~~~~l~~L~~L~L~~~~i~~--l~~~l~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L 210 (611)
....+|..+..+++|++|++++|.++. ++..+..+++|+.|++.++.....++.....+++|
T Consensus 265 ~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L 344 (592)
T 3ogk_B 265 NLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQL 344 (592)
T ss_dssp CCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTC
T ss_pred HhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCC
Confidence 233445555566666677776666542 22234566666666666432222333333456777
Q ss_pred CEEEecC----------CCCCcc--cCcccCCCCCccEEeccCCCccc-CCccccc-cCCCcEEEcCCC---CCCCCCCc
Q 007237 211 KTLNLSG----------CCKLEN--VPDTLGQVESLEELDISETAVRR-PPSSVFL-MKNLRTLSFSGC---NGPPSSAS 273 (611)
Q Consensus 211 ~~L~l~~----------c~~l~~--~p~~l~~l~~L~~L~l~~~~~~~-~~~~~~~-l~~L~~L~l~~c---~~~~~~~~ 273 (611)
++|++++ |..+.. ++.....+++|+.|+++.+.+.. .+..+.. +++|+.|+++++ +.......
T Consensus 345 ~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~ 424 (592)
T 3ogk_B 345 KRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPL 424 (592)
T ss_dssp CEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCC
T ss_pred CEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchH
Confidence 7777773 444432 22223446777777776665552 2233333 777888877643 23222100
Q ss_pred -------ccccccccccCC---ccchhhccCCCC-CCCCCCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCC--c
Q 007237 274 -------WHLHLPFNLMGK---SSCLVALMLPSL-SGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFV--T 340 (611)
Q Consensus 274 -------~~~~~~~~~~~~---~~~~~~~~l~~l-~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~--~ 340 (611)
......+..+.. ........+..+ ..+++|+.|++++|++++..++..+..+++|+.|+|++|.++ .
T Consensus 425 ~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 504 (592)
T 3ogk_B 425 DNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERA 504 (592)
T ss_dssp HHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHH
T ss_pred HHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHH
Confidence 000011111111 101111111111 347899999999999876566667788999999999999987 3
Q ss_pred CCcccccCCCcCeeeccccc
Q 007237 341 LPASINSLLNLKELEMEDCK 360 (611)
Q Consensus 341 lp~~i~~l~~L~~L~L~~c~ 360 (611)
++..+..+++|++|+|++|+
T Consensus 505 ~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 505 IAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp HHHHHHHCSSCCEEEEESCB
T ss_pred HHHHHHhcCccCeeECcCCc
Confidence 56667889999999999998
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.84 E-value=3.1e-21 Score=207.88 Aligned_cols=240 Identities=18% Similarity=0.145 Sum_probs=145.8
Q ss_pred CCCccEEEecCCcCcCcCCcccCCCCCCcEEEcCCCCccccCccccCCCCCcEEeccCCCCCCCCcccCCCCCCCCEEEe
Q 007237 65 VESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKL 144 (611)
Q Consensus 65 l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L 144 (611)
+++|++|+|++|.+.+..|..++.+++|++|++++|.+..++. +..+++|++|++++|. +..+|. .++|+.|++
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~----~~~L~~L~L 106 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELLV----GPSIETLHA 106 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSE-EEEEEE----CTTCCEEEC
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCc-CCCCCC----CCCcCEEEC
Confidence 5578888888887777667777788888888888887776554 6677777777777653 444443 356666666
Q ss_pred cCCCCCcccccccCCCCCCCEEeecCccCCCcC-cccCCCCCCCEEeccCCcCCcccccCccCCCCCCEEEecCCCCCcc
Q 007237 145 SGCSKLKKFPQIVTTMEDLSELNLDGTSITEVP-SSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLEN 223 (611)
Q Consensus 145 ~~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~l~-~~l~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~c~~l~~ 223 (611)
++|......+. .+++|+.|++++|.++.++ ..++.+++|+.|++++|...+..|..+.
T Consensus 107 ~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~------------------ 165 (487)
T 3oja_A 107 ANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA------------------ 165 (487)
T ss_dssp CSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGG------------------
T ss_pred cCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHh------------------
Confidence 66544332221 2344555555555555432 2344445555555555444444444332
Q ss_pred cCcccCCCCCccEEeccCCCcccCCccccccCCCcEEEcCCCCCCCCCCcccccccccccCCccchhhccCCCCCCCCCC
Q 007237 224 VPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSL 303 (611)
Q Consensus 224 ~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L 303 (611)
+.+++|+.|++++|.+..++.. ..+++|+.|++++|... ...+.+..+++|
T Consensus 166 -----~~l~~L~~L~Ls~N~l~~~~~~-~~l~~L~~L~Ls~N~l~-----------------------~~~~~~~~l~~L 216 (487)
T 3oja_A 166 -----ASSDTLEHLNLQYNFIYDVKGQ-VVFAKLKTLDLSSNKLA-----------------------FMGPEFQSAAGV 216 (487)
T ss_dssp -----GGTTTCCEEECTTSCCCEEECC-CCCTTCCEEECCSSCCC-----------------------EECGGGGGGTTC
T ss_pred -----hhCCcccEEecCCCcccccccc-ccCCCCCEEECCCCCCC-----------------------CCCHhHcCCCCc
Confidence 1344455555555544444322 23555555555554411 011224456677
Q ss_pred CEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCC--cCCcccccCCCcCeeeccccccc
Q 007237 304 TKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFV--TLPASINSLLNLKELEMEDCKRL 362 (611)
Q Consensus 304 ~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~--~lp~~i~~l~~L~~L~L~~c~~L 362 (611)
+.|++++|.+. .+|..+..+++|+.|++++|.+. .+|..+..++.|+.|++..+..+
T Consensus 217 ~~L~Ls~N~l~--~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~~~~~~ 275 (487)
T 3oja_A 217 TWISLRNNKLV--LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKL 275 (487)
T ss_dssp SEEECTTSCCC--EECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cEEEecCCcCc--ccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEeccccccc
Confidence 77777777775 37888888999999999999988 77888888999998888755433
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.83 E-value=2.8e-20 Score=200.44 Aligned_cols=213 Identities=15% Similarity=0.126 Sum_probs=150.2
Q ss_pred CCcEEeccCCCCCCCCcccCCCCCCCCEEEecCCCCCcccccccCCCCCCCEEeecCccCCCcCcccCCCCCCCEEeccC
Q 007237 114 GLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLND 193 (611)
Q Consensus 114 ~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~l~~~l~~l~~L~~L~L~~ 193 (611)
+|++|++++|......|..+..+++|++|+|++|...+..| +..+++|++|++++|.++.++.. ++|+.|++++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L~L~~ 108 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVG----PSIETLHAAN 108 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEEC----TTCCEEECCS
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCC----CCcCEEECcC
Confidence 45555555544333333445556666666666554333332 55666666666666666655532 6777777777
Q ss_pred CcCCcccccCccCCCCCCEEEecCCCCCcccCcccCCCCCccEEeccCCCccc-CCcccc-ccCCCcEEEcCCCCCCCCC
Q 007237 194 CKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRR-PPSSVF-LMKNLRTLSFSGCNGPPSS 271 (611)
Q Consensus 194 ~~~~~~lp~~i~~l~~L~~L~l~~c~~l~~~p~~l~~l~~L~~L~l~~~~~~~-~~~~~~-~l~~L~~L~l~~c~~~~~~ 271 (611)
|...+..+. .+++|+.|++++|......|..++.+++|+.|++++|.+.. .|..+. .+++|+.|++++|...
T Consensus 109 N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~--- 182 (487)
T 3oja_A 109 NNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY--- 182 (487)
T ss_dssp SCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC---
T ss_pred CcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc---
Confidence 766554443 35678888888877776667777888888888998888885 344554 6899999999998722
Q ss_pred CcccccccccccCCccchhhccCCCCCCCCCCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCCcCCcccccCCCc
Q 007237 272 ASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNL 351 (611)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L 351 (611)
.++....+++|+.|++++|.++ .+|..+..+++|+.|+|++|.++.+|..+..+++|
T Consensus 183 ---------------------~~~~~~~l~~L~~L~Ls~N~l~--~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L 239 (487)
T 3oja_A 183 ---------------------DVKGQVVFAKLKTLDLSSNKLA--FMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNL 239 (487)
T ss_dssp ---------------------EEECCCCCTTCCEEECCSSCCC--EECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTC
T ss_pred ---------------------cccccccCCCCCEEECCCCCCC--CCCHhHcCCCCccEEEecCCcCcccchhhccCCCC
Confidence 1133446889999999999985 37777889999999999999999999989999999
Q ss_pred Ceeecccccc
Q 007237 352 KELEMEDCKR 361 (611)
Q Consensus 352 ~~L~L~~c~~ 361 (611)
+.|++++|+.
T Consensus 240 ~~L~l~~N~l 249 (487)
T 3oja_A 240 EHFDLRGNGF 249 (487)
T ss_dssp CEEECTTCCB
T ss_pred CEEEcCCCCC
Confidence 9999998873
No 71
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.83 E-value=1.9e-23 Score=231.61 Aligned_cols=84 Identities=18% Similarity=0.206 Sum_probs=57.4
Q ss_pred CCCCCCCCEEeccCCCCCCCCCCCCCC-CCCCCCEEEcCCCCCC--cCCcccccCCCcCeeecccccccCc----CCCCC
Q 007237 297 LSGLRSLTKLDLSDCGLGEGAIPSDIG-NLHSLNELYLSKNNFV--TLPASINSLLNLKELEMEDCKRLQF----LPQLP 369 (611)
Q Consensus 297 l~~l~~L~~L~Ls~~~l~~~~~~~~l~-~l~~L~~L~L~~n~l~--~lp~~i~~l~~L~~L~L~~c~~L~~----lp~lp 369 (611)
+..+++|+.|++++ .+++..+ ..+. .+++|+.|+|++|.++ .++.....+++|++|+|++|+.-.. +..-.
T Consensus 428 ~~~~~~L~~L~L~~-~l~~~~~-~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l 505 (594)
T 2p1m_B 428 VEHCKDLRRLSLSG-LLTDKVF-EYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKL 505 (594)
T ss_dssp HHHCTTCCEEECCS-SCCHHHH-HHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGG
T ss_pred HhhCCCccEEeecC-cccHHHH-HHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhC
Confidence 34678899999977 5543222 2333 3789999999999886 2332336789999999999985211 11123
Q ss_pred CCcceeeecCCCC
Q 007237 370 PNIIFVKVNGCSS 382 (611)
Q Consensus 370 ~~L~~L~i~~C~s 382 (611)
++|+.|++++|+-
T Consensus 506 ~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 506 ETMRSLWMSSCSV 518 (594)
T ss_dssp GGSSEEEEESSCC
T ss_pred CCCCEEeeeCCCC
Confidence 6889999999975
No 72
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.82 E-value=1.1e-18 Score=174.88 Aligned_cols=199 Identities=20% Similarity=0.246 Sum_probs=98.3
Q ss_pred CCCCCCcEEEcCCCCccccCccccCCCCCcEEeccCCCCCCCCcccCCCCCCCCEEEecCCCCCcccccccCCCCCCCEE
Q 007237 87 GSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSEL 166 (611)
Q Consensus 87 ~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~~~~l~~L~~L 166 (611)
+++++++.+++++++++.+|..+. ++++.|++++|......|..+..+++|+.|++++|... .++.. +.+++|++|
T Consensus 7 ~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~-~~l~~L~~L 82 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD-GTLPVLGTL 82 (290)
T ss_dssp ECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC-SCCTTCCEE
T ss_pred cccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccCC-CCCCcCCEE
Confidence 344555555555555555554432 34555555554322222333444555555555554322 22222 444555555
Q ss_pred eecCccCCCcCcccCCCCCCCEEeccCCcCCcccccCccCCCCCCEEEecCCCCCcccCcccCCCCCccEEeccCCCccc
Q 007237 167 NLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRR 246 (611)
Q Consensus 167 ~L~~~~i~~l~~~l~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~c~~l~~~p~~l~~l~~L~~L~l~~~~~~~ 246 (611)
++++|.++.+|..+..+++|++|++++|... ...+..+..+++|+.|++++|.+..
T Consensus 83 ~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~------------------------~l~~~~~~~l~~L~~L~L~~N~l~~ 138 (290)
T 1p9a_G 83 DLSHNQLQSLPLLGQTLPALTVLDVSFNRLT------------------------SLPLGALRGLGELQELYLKGNELKT 138 (290)
T ss_dssp ECCSSCCSSCCCCTTTCTTCCEEECCSSCCC------------------------CCCSSTTTTCTTCCEEECTTSCCCC
T ss_pred ECCCCcCCcCchhhccCCCCCEEECCCCcCc------------------------ccCHHHHcCCCCCCEEECCCCCCCc
Confidence 5555555555544444444555555444433 2223445555555555555555554
Q ss_pred CCccccccCCCcEEEcCCCCCCCCCCcccccccccccCCccchhhccCCCCCCCCCCCEEeccCCCCCCCCCC-CCCCCC
Q 007237 247 PPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIP-SDIGNL 325 (611)
Q Consensus 247 ~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~~-~~l~~l 325 (611)
+|... +..+++|+.|++++|++. .+| ..+..+
T Consensus 139 ~~~~~---------------------------------------------~~~l~~L~~L~L~~N~l~--~l~~~~~~~l 171 (290)
T 1p9a_G 139 LPPGL---------------------------------------------LTPTPKLEKLSLANNNLT--ELPAGLLNGL 171 (290)
T ss_dssp CCTTT---------------------------------------------TTTCTTCCEEECTTSCCS--CCCTTTTTTC
T ss_pred cChhh---------------------------------------------cccccCCCEEECCCCcCC--ccCHHHhcCc
Confidence 43321 223344555555555543 133 234556
Q ss_pred CCCCEEEcCCCCCCcCCcccccCCCcCeeeccccc
Q 007237 326 HSLNELYLSKNNFVTLPASINSLLNLKELEMEDCK 360 (611)
Q Consensus 326 ~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~ 360 (611)
++|+.|+|++|+++.+|..+..+++|+.|++++++
T Consensus 172 ~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 172 ENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred CCCCEEECCCCcCCccChhhcccccCCeEEeCCCC
Confidence 66666666666666666666666666666666655
No 73
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.82 E-value=1.1e-18 Score=174.86 Aligned_cols=195 Identities=26% Similarity=0.336 Sum_probs=130.6
Q ss_pred ccCCCCCcEEeccCCCCCCCCcccCCCCCCCCEEEecCCCCCcccccccCCCCCCCEEeecCccCCCcCcccCCCCCCCE
Q 007237 109 IEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLEL 188 (611)
Q Consensus 109 ~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~l~~~l~~l~~L~~ 188 (611)
+.++++|+++++++ ..++.+|..+. ++|+.|++++|......+..+..+++|++|++++|.++.++..
T Consensus 6 ~~~l~~l~~l~~~~-~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--------- 73 (290)
T 1p9a_G 6 VSKVASHLEVNCDK-RNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--------- 73 (290)
T ss_dssp EECSTTCCEEECTT-SCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC---------
T ss_pred ccccCCccEEECCC-CCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC---------
Confidence 45566677777766 34566665542 5666666666655444455556666666666666555544332
Q ss_pred EeccCCcCCcccccCccCCCCCCEEEecCCCCCcccCcccCCCCCccEEeccCCCcccCCccccccCCCcEEEcCCCCCC
Q 007237 189 LNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGP 268 (611)
Q Consensus 189 L~L~~~~~~~~lp~~i~~l~~L~~L~l~~c~~l~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~~ 268 (611)
..+++|++|++++|. +..+|..+..+++|+.|++++|.+..++..
T Consensus 74 ----------------~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~------------------ 118 (290)
T 1p9a_G 74 ----------------GTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLG------------------ 118 (290)
T ss_dssp ----------------SCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEECCSSCCCCCCSS------------------
T ss_pred ----------------CCCCcCCEEECCCCc-CCcCchhhccCCCCCEEECCCCcCcccCHH------------------
Confidence 345556666666543 335666677888899999998887766531
Q ss_pred CCCCcccccccccccCCccchhhccCCCCCCCCCCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCCcCCcc-ccc
Q 007237 269 PSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPAS-INS 347 (611)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~-i~~ 347 (611)
.+.++++|+.|++++|.+. ...+..+..+++|+.|+|++|+++.+|.. +..
T Consensus 119 ---------------------------~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~ 170 (290)
T 1p9a_G 119 ---------------------------ALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNG 170 (290)
T ss_dssp ---------------------------TTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTT
T ss_pred ---------------------------HHcCCCCCCEEECCCCCCC-ccChhhcccccCCCEEECCCCcCCccCHHHhcC
Confidence 1456677888888888875 33445678999999999999999999876 478
Q ss_pred CCCcCeeecccccccCcCCCC---CCCcceeeecC
Q 007237 348 LLNLKELEMEDCKRLQFLPQL---PPNIIFVKVNG 379 (611)
Q Consensus 348 l~~L~~L~L~~c~~L~~lp~l---p~~L~~L~i~~ 379 (611)
+++|++|++++|+ ++.+|.- .++|+.|++.+
T Consensus 171 l~~L~~L~L~~N~-l~~ip~~~~~~~~L~~l~L~~ 204 (290)
T 1p9a_G 171 LENLDTLLLQENS-LYTIPKGFFGSHLLPFAFLHG 204 (290)
T ss_dssp CTTCCEEECCSSC-CCCCCTTTTTTCCCSEEECCS
T ss_pred cCCCCEEECCCCc-CCccChhhcccccCCeEEeCC
Confidence 9999999999987 6666542 12455555544
No 74
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.81 E-value=1.3e-18 Score=172.76 Aligned_cols=177 Identities=22% Similarity=0.268 Sum_probs=92.8
Q ss_pred CccEEEecCCcCcCcCCcccCCCCCCcEEEcCCCCccccCccc-cCCCCCcEEeccCCCCCCCCcc-cCCCCCCCCEEEe
Q 007237 67 SLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSI-EHLFGLVQLTLNDCKNLSSLPV-AISSFQCLRNLKL 144 (611)
Q Consensus 67 ~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~L~~~~i~~lp~~~-~~l~~L~~L~L~~c~~l~~lp~-~l~~l~~L~~L~L 144 (611)
+|++|++++|.+....+..+..+++|++|+++++.++.+|..+ ..+++|++|++++|. +..+|. .+..+++|++|++
T Consensus 38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l 116 (270)
T 2o6q_A 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK-LQALPIGVFDQLVNLAELRL 116 (270)
T ss_dssp TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSC-CCCCCTTTTTTCSSCCEEEC
T ss_pred CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCc-CCcCCHhHcccccCCCEEEC
Confidence 4555555555544444445555666666666666665555432 455566666665543 333332 3455566666666
Q ss_pred cCCCCCcccccccCCCCCCCEEeecCccCCCcCcc-cCCCCCCCEEeccCCcCCcccccCccCCCCCCEEEecCCCCCcc
Q 007237 145 SGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSS-IELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLEN 223 (611)
Q Consensus 145 ~~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~l~~~-l~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~c~~l~~ 223 (611)
++|......+..+..+++|++|++++|.++.++.. +..+++|+.|++++|......+..+..+++|++|++++|.....
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 196 (270)
T 2o6q_A 117 DRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRV 196 (270)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcC
Confidence 65544444444455566666666666666555543 45555666666655544443333455555555555555533322
Q ss_pred cCcccCCCCCccEEeccCCCc
Q 007237 224 VPDTLGQVESLEELDISETAV 244 (611)
Q Consensus 224 ~p~~l~~l~~L~~L~l~~~~~ 244 (611)
.+..+..+++|+.|++++|.+
T Consensus 197 ~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 197 PEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCB
T ss_pred CHHHhccccCCCEEEecCCCe
Confidence 223344555555555555543
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.81 E-value=4.4e-19 Score=176.63 Aligned_cols=199 Identities=21% Similarity=0.104 Sum_probs=98.0
Q ss_pred CccEEEecCCcCcCcCCcccCCCCCCcEEEcCCCCccccCc-cccCCCCCcEEeccCCCCCCCCcccCCCCCCCCEEEec
Q 007237 67 SLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPL-SIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLS 145 (611)
Q Consensus 67 ~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~ 145 (611)
+|++|++++|.+.+..+..+..+++|++|+++++.+..++. .+..+++|++|++++|......+..+.++++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 34444444444443333344444455555555544444432 34444555555555443222222334445555555555
Q ss_pred CCCCCcccccccCCCCCCCEEeecCccCCC--cCcccCCCCCCCEEeccCCcCCcccccCccCCCCCC----EEEecCCC
Q 007237 146 GCSKLKKFPQIVTTMEDLSELNLDGTSITE--VPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLK----TLNLSGCC 219 (611)
Q Consensus 146 ~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~--l~~~l~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~----~L~l~~c~ 219 (611)
+|......+..++.+++|++|++++|.++. +|..+..+++|+.|++++|...+..+..+..+++|+ .|++++|.
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~ 188 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSC
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCc
Confidence 544333333344555555555555555543 344555555555555555554444344444444444 56666654
Q ss_pred CCcccCcccCCCCCccEEeccCCCcccCCccc-cccCCCcEEEcCCCC
Q 007237 220 KLENVPDTLGQVESLEELDISETAVRRPPSSV-FLMKNLRTLSFSGCN 266 (611)
Q Consensus 220 ~l~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~-~~l~~L~~L~l~~c~ 266 (611)
... ++.......+|+.|++++|.+..+|... ..+++|+.|++++|.
T Consensus 189 l~~-~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 189 MNF-IQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp CCE-ECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred ccc-cCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCc
Confidence 432 2222223346666666666666655443 456667777776665
No 76
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.81 E-value=8.1e-19 Score=174.69 Aligned_cols=202 Identities=21% Similarity=0.202 Sum_probs=109.0
Q ss_pred CCCEEEecCCCCCcccccccCCCCCCCEEeecCccCCCcCc-ccCCCCCCCEEeccCCcCCcccccCccCCCCCCEEEec
Q 007237 138 CLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPS-SIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLS 216 (611)
Q Consensus 138 ~L~~L~L~~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~l~~-~l~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~ 216 (611)
+|++|++++|......+..+..+++|++|++++|.++.++. .+..+++|++|++++|...+..+..+..+++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 34444444443332223344444444444444444444333 34445555555555554444444445555555555555
Q ss_pred CCCCCcccCcccCCCCCccEEeccCCCccc--CCccccccCCCcEEEcCCCCCCCCCCcccccccccccCCccchhhccC
Q 007237 217 GCCKLENVPDTLGQVESLEELDISETAVRR--PPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALML 294 (611)
Q Consensus 217 ~c~~l~~~p~~l~~l~~L~~L~l~~~~~~~--~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 294 (611)
+|......+..++.+++|+.|++++|.+.. +|..+..+++|++|++++|...... ...+
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~-------------------~~~~ 169 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY-------------------CTDL 169 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC-------------------GGGG
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCC-------------------HHHh
Confidence 554433333345555666666666665554 4555566666666666665421100 0000
Q ss_pred CCCCCCCCCC-EEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCCcCCcc-cccCCCcCeeeccccc
Q 007237 295 PSLSGLRSLT-KLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPAS-INSLLNLKELEMEDCK 360 (611)
Q Consensus 295 ~~l~~l~~L~-~L~Ls~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~-i~~l~~L~~L~L~~c~ 360 (611)
..+..++.|. .|++++|.+. .++.......+|+.|++++|+++.+|.. +..+++|+.|++++++
T Consensus 170 ~~l~~L~~l~l~L~ls~n~l~--~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 170 RVLHQMPLLNLSLDLSLNPMN--FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp HHHHTCTTCCEEEECCSSCCC--EECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred hhhhhccccceeeecCCCccc--ccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCc
Confidence 1122233333 7888888874 3554444555889999999988888765 5778888888888876
No 77
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.80 E-value=4e-19 Score=172.96 Aligned_cols=196 Identities=19% Similarity=0.213 Sum_probs=143.6
Q ss_pred CCccEEEecCCcCcCcCCcccCCCCCCcEEEcCCCC-ccccCc-cccCCCCCcEEeccCCCCCCCCcc-cCCCCCCCCEE
Q 007237 66 ESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTD-IKELPL-SIEHLFGLVQLTLNDCKNLSSLPV-AISSFQCLRNL 142 (611)
Q Consensus 66 ~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~L~~~~-i~~lp~-~~~~l~~L~~L~L~~c~~l~~lp~-~l~~l~~L~~L 142 (611)
++|++|++++|.+.+..+..+..+++|++|+++++. ++.++. .+..+++|++|++++|+.++.+|. .+..+++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 467777777777666555677777888888888876 777765 577778888888877555666653 46677888888
Q ss_pred EecCCCCCcccccccCCCCCCC---EEeecCc-cCCCcCcc-cCCCCCCC-EEeccCCcCCcccccCccCCCCCCEEEec
Q 007237 143 KLSGCSKLKKFPQIVTTMEDLS---ELNLDGT-SITEVPSS-IELLPGLE-LLNLNDCKNFARVPSSINGLKSLKTLNLS 216 (611)
Q Consensus 143 ~L~~~~~l~~~p~~~~~l~~L~---~L~L~~~-~i~~l~~~-l~~l~~L~-~L~L~~~~~~~~lp~~i~~l~~L~~L~l~ 216 (611)
++++|.. ..+|. +..+++|+ +|++++| .++.++.. +..+++|+ .|++++|... .+|......++|+.|+++
T Consensus 111 ~l~~n~l-~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~ 187 (239)
T 2xwt_C 111 GIFNTGL-KMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLN 187 (239)
T ss_dssp EEEEECC-CSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECT
T ss_pred eCCCCCC-ccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcC
Confidence 8887653 34665 66777777 8888888 78777654 77788888 8888887655 566554444788888888
Q ss_pred CCCCCccc-CcccCCC-CCccEEeccCCCcccCCccccccCCCcEEEcCCCC
Q 007237 217 GCCKLENV-PDTLGQV-ESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCN 266 (611)
Q Consensus 217 ~c~~l~~~-p~~l~~l-~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~c~ 266 (611)
+|..+..+ +..+..+ ++|+.|++++|.+..+|.. .+++|+.|++.++.
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC-
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCcc
Confidence 88544455 4567888 8999999999998888775 68889999988764
No 78
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.80 E-value=8.7e-23 Score=226.22 Aligned_cols=387 Identities=17% Similarity=0.167 Sum_probs=233.7
Q ss_pred ccCCCcccEEEccCCCCCCcCC----C------------CCCCcccccccccccccccc-cCccccccCccccCCCccEE
Q 007237 9 QQHLNMLKVMKLSHSENLIKTP----D------------FTEAPNLEELYLEGCTKLRK-VHPSLLLHNKLIFVESLKIL 71 (611)
Q Consensus 9 ~~~l~~L~~L~Ls~~~~l~~~~----~------------~~~~~~L~~L~L~~c~~l~~-i~~s~~~l~~L~~l~~L~~L 71 (611)
+..+++|+.|+++++....... . ...+++|++|+|++|. ++. .+..+. ..+++|++|
T Consensus 62 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~~~~~~~l~-----~~~~~L~~L 135 (594)
T 2p1m_B 62 IRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV-VTDDCLELIA-----KSFKNFKVL 135 (594)
T ss_dssp HHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CCHHHHHHHH-----HHCTTCCEE
T ss_pred HhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcE-EcHHHHHHHH-----HhCCCCcEE
Confidence 4567899999999986543321 1 1357899999999884 332 111111 137899999
Q ss_pred EecCCcCcCc--CCcccCCCCCCcEEEcCCCCccc-----cCccccCCCCCcEEeccCCC-CCC--CCcccCCCCCCCCE
Q 007237 72 ILSGCLKLRK--FPHVVGSMECLQELLLDGTDIKE-----LPLSIEHLFGLVQLTLNDCK-NLS--SLPVAISSFQCLRN 141 (611)
Q Consensus 72 ~Ls~~~~~~~--lp~~l~~l~~L~~L~L~~~~i~~-----lp~~~~~l~~L~~L~L~~c~-~l~--~lp~~l~~l~~L~~ 141 (611)
+|++|...+. ++....++++|++|+++++.+.. ++.....+++|++|++++|. .+. .++..+.++++|++
T Consensus 136 ~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~ 215 (594)
T 2p1m_B 136 VLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKS 215 (594)
T ss_dssp EEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCE
T ss_pred eCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcE
Confidence 9999854433 55666689999999999988663 34444577899999999876 111 12222344789999
Q ss_pred EEecCCCCCcccccccCCCCCCCEEeecCcc-------CCCcCcccCCCCCCCEE-eccCCcCCcccccCccCCCCCCEE
Q 007237 142 LKLSGCSKLKKFPQIVTTMEDLSELNLDGTS-------ITEVPSSIELLPGLELL-NLNDCKNFARVPSSINGLKSLKTL 213 (611)
Q Consensus 142 L~L~~~~~l~~~p~~~~~l~~L~~L~L~~~~-------i~~l~~~l~~l~~L~~L-~L~~~~~~~~lp~~i~~l~~L~~L 213 (611)
|++++|.....++..+..+++|++|++..+. +..++..+.++++|+.| .+.+.. ...++..+..+++|++|
T Consensus 216 L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~-~~~l~~~~~~~~~L~~L 294 (594)
T 2p1m_B 216 LKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAV-PAYLPAVYSVCSRLTTL 294 (594)
T ss_dssp EECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCC-GGGGGGGHHHHTTCCEE
T ss_pred EecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccc-hhhHHHHHHhhCCCCEE
Confidence 9999987777788888889999999865442 33455567777888877 444322 23445445567888888
Q ss_pred EecCCCCCcc-cCcccCCCCCccEEeccCCCcc--cCCccccccCCCcEEEcCCCC--------CCCCCCcccc---ccc
Q 007237 214 NLSGCCKLEN-VPDTLGQVESLEELDISETAVR--RPPSSVFLMKNLRTLSFSGCN--------GPPSSASWHL---HLP 279 (611)
Q Consensus 214 ~l~~c~~l~~-~p~~l~~l~~L~~L~l~~~~~~--~~~~~~~~l~~L~~L~l~~c~--------~~~~~~~~~~---~~~ 279 (611)
++++|..... ++..+..+++|+.|++++| +. .++.....+++|++|++.+|. .........+ ...
T Consensus 295 ~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~ 373 (594)
T 2p1m_B 295 NLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPK 373 (594)
T ss_dssp ECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTT
T ss_pred EccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchh
Confidence 8888773322 2333567788888888877 33 223333457788888885432 1111000000 000
Q ss_pred ccccCC-ccchhhccCCCC-CCCCCCCEEecc--C----CCCCC----CCCCCCCCCCCCCCEEEcCCCCCC-cCCcccc
Q 007237 280 FNLMGK-SSCLVALMLPSL-SGLRSLTKLDLS--D----CGLGE----GAIPSDIGNLHSLNELYLSKNNFV-TLPASIN 346 (611)
Q Consensus 280 ~~~~~~-~~~~~~~~l~~l-~~l~~L~~L~Ls--~----~~l~~----~~~~~~l~~l~~L~~L~L~~n~l~-~lp~~i~ 346 (611)
+..+.. ........+..+ ..+++|+.|+++ + +.+++ ..++..+..+++|+.|++++ +++ ..+..+.
T Consensus 374 L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~ 452 (594)
T 2p1m_B 374 LESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIG 452 (594)
T ss_dssp CCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHH
T ss_pred HHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHH
Confidence 110000 000111111112 246789999998 3 34431 11222256778999999977 555 2233444
Q ss_pred c-CCCcCeeecccccccCc-CC---CCCCCcceeeecCCCCccccc---CcccccccCCcccccccc
Q 007237 347 S-LLNLKELEMEDCKRLQF-LP---QLPPNIIFVKVNGCSSLVTLL---GALKLCKSNGIVIECIDS 405 (611)
Q Consensus 347 ~-l~~L~~L~L~~c~~L~~-lp---~lp~~L~~L~i~~C~sL~~l~---~~~~~~~l~~l~~~~c~~ 405 (611)
. +++|+.|++++|..-.. ++ .-.++|++|++++|+- .... ......+++.|.+.+|+.
T Consensus 453 ~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 453 TYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred HhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 4 88999999998873111 11 1247899999999985 2211 112345677788888865
No 79
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.80 E-value=5.2e-18 Score=168.32 Aligned_cols=101 Identities=23% Similarity=0.282 Sum_probs=42.2
Q ss_pred CcEEEcCCCCccccCccccCCCCCcEEeccCCCCCCCCcc-cCCCCCCCCEEEecCCCCCcccccccCCCCCCCEEeecC
Q 007237 92 LQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPV-AISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDG 170 (611)
Q Consensus 92 L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~c~~l~~lp~-~l~~l~~L~~L~L~~~~~l~~~p~~~~~l~~L~~L~L~~ 170 (611)
.+.+++++++++.+|..+. ++|++|++++|. +..+|. .+.++++|++|++++|......+..+..+++|++|++++
T Consensus 18 ~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 18 KNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNK-LSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSC-CSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCEEEccCCCCCccCCCCC--CCCCEEECcCCC-CCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 3444444444444444332 344445554433 223322 344444455555544432222222234444444444444
Q ss_pred ccCCCcCcc-cCCCCCCCEEeccCCc
Q 007237 171 TSITEVPSS-IELLPGLELLNLNDCK 195 (611)
Q Consensus 171 ~~i~~l~~~-l~~l~~L~~L~L~~~~ 195 (611)
|.++.++.. +..+++|++|++++|.
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~ 120 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQ 120 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSC
T ss_pred CcCCcCCHhHcccccCCCEEECCCCc
Confidence 444444332 2334444444444443
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.79 E-value=5.2e-19 Score=175.74 Aligned_cols=209 Identities=16% Similarity=0.174 Sum_probs=129.9
Q ss_pred CCCCCCcccccccccccccccccCccccccCccccCCCccEEEecCCcCcCcCCcccCCCCCCcEEEcCCCCccccCcc-
Q 007237 30 PDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLS- 108 (611)
Q Consensus 30 ~~~~~~~~L~~L~L~~c~~l~~i~~s~~~l~~L~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~L~~~~i~~lp~~- 108 (611)
.....+++|+.|+++++ .++.++ .+..+++|++|++++|.+.+ + ..+..+++|++|++++|.++.++..
T Consensus 35 ~~~~~l~~L~~L~l~~~-~i~~~~-------~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~ 104 (272)
T 3rfs_A 35 VTQNELNSIDQIIANNS-DIKSVQ-------GIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGV 104 (272)
T ss_dssp ECHHHHTTCCEEECTTS-CCCCCT-------TGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTT
T ss_pred cccccccceeeeeeCCC-Cccccc-------ccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhH
Confidence 34455666666666665 333322 23336667777777666544 2 3566677777777777777666543
Q ss_pred ccCCCCCcEEeccCCCCCCCCcccCCCCCCCCEEEecCCCCCcccccccCCCCCCCEEeecCccCCCcCcc-cCCCCCCC
Q 007237 109 IEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSS-IELLPGLE 187 (611)
Q Consensus 109 ~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~l~~~-l~~l~~L~ 187 (611)
+..+++|++|++++|......+..+..+++|++|++++|......+..+..+++|++|++++|.++.++.. ++.+++|+
T Consensus 105 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 184 (272)
T 3rfs_A 105 FDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLK 184 (272)
T ss_dssp TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred hcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCC
Confidence 46677777777776553322333356677777777777654444444556777777777777777766554 46677777
Q ss_pred EEeccCCcCCcccccCccCCCCCCEEEecCCCCCcccCcccCCCCCccEEeccCCCcc-cCCccccccC
Q 007237 188 LLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVR-RPPSSVFLMK 255 (611)
Q Consensus 188 ~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~c~~l~~~p~~l~~l~~L~~L~l~~~~~~-~~~~~~~~l~ 255 (611)
.|++++|...+..+..+..+++|+.|++++|... +.+++|+.|++..|.+. .+|..++.+.
T Consensus 185 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 185 DLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC-------CCTTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred EEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc-------ccCcHHHHHHHHHHhCCCcccCcccccC
Confidence 7777777766655555677777777777776433 34556777777766665 4555555443
No 81
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.79 E-value=6.9e-19 Score=174.82 Aligned_cols=174 Identities=16% Similarity=0.230 Sum_probs=91.7
Q ss_pred CCCccEEEecCCcCcCcCCcccCCCCCCcEEEcCCCCccccCccccCCCCCcEEeccCCCCCCCCcccCCCCCCCCEEEe
Q 007237 65 VESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKL 144 (611)
Q Consensus 65 l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L 144 (611)
+++|+.|++++|.+.. + ..++.+++|++|+++++.+..++ .+.. +++|++|++
T Consensus 40 l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~~-~l~~------------------------l~~L~~L~L 92 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDIS-ALKE------------------------LTNLTYLIL 92 (272)
T ss_dssp HTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCCG-GGTT------------------------CTTCCEEEC
T ss_pred ccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCch-hhcC------------------------CCCCCEEEC
Confidence 4556666666554332 1 22444555555555555544432 3444 455555555
Q ss_pred cCCCCCcccccccCCCCCCCEEeecCccCCCcCcc-cCCCCCCCEEeccCCcCCcccccCccCCCCCCEEEecCCCCCcc
Q 007237 145 SGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSS-IELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLEN 223 (611)
Q Consensus 145 ~~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~l~~~-l~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~c~~l~~ 223 (611)
++|......+..+..+++|++|++++|.++.++.. ++.+++|++|++++|...+..+..+..+++|++|++++|.....
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 172 (272)
T 3rfs_A 93 TGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSL 172 (272)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCcc
Confidence 55443333333445555555555555555554443 45556666666666554444444455666666666666655444
Q ss_pred cCcccCCCCCccEEeccCCCcccCCcc-ccccCCCcEEEcCCC
Q 007237 224 VPDTLGQVESLEELDISETAVRRPPSS-VFLMKNLRTLSFSGC 265 (611)
Q Consensus 224 ~p~~l~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~c 265 (611)
.+..++.+++|+.|++++|.+..++.. +..+++|+.|++++|
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 173 PEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCC
Confidence 444456677777777777766655432 233444444444443
No 82
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.79 E-value=1.6e-20 Score=192.52 Aligned_cols=196 Identities=21% Similarity=0.283 Sum_probs=100.0
Q ss_pred CccEEEecCCcCcCcCCcccCCC--CCCcEEEcCCCCccccCccccCCCCCcEEeccCCCCCCC-CcccCCCCCCCCEEE
Q 007237 67 SLKILILSGCLKLRKFPHVVGSM--ECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSS-LPVAISSFQCLRNLK 143 (611)
Q Consensus 67 ~L~~L~Ls~~~~~~~lp~~l~~l--~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~c~~l~~-lp~~l~~l~~L~~L~ 143 (611)
.++.++++++.+. +..+..+ ++++.|+++++.+...+..+..+++|++|++++|..... +|..+..+++|++|+
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 3667777766543 3444444 666777777766666555555666666666666542222 444455566666666
Q ss_pred ecCCCCCcccccccCCCCCCCEEeecCc-cCC--CcCcccCCCCCCCEEeccCC-cCCcc-cccCccCCC-CCCEEEecC
Q 007237 144 LSGCSKLKKFPQIVTTMEDLSELNLDGT-SIT--EVPSSIELLPGLELLNLNDC-KNFAR-VPSSINGLK-SLKTLNLSG 217 (611)
Q Consensus 144 L~~~~~l~~~p~~~~~l~~L~~L~L~~~-~i~--~l~~~l~~l~~L~~L~L~~~-~~~~~-lp~~i~~l~-~L~~L~l~~ 217 (611)
+++|......+..+..+++|++|++++| .++ .++..+..+++|++|++++| ..... ++..+..++ +|++|++++
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~ 204 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG 204 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence 6666544445555555566666666555 344 23444445555555555555 32221 333344455 555555555
Q ss_pred CC--CC-cccCcccCCCCCccEEeccCCC-cc-cCCccccccCCCcEEEcCCC
Q 007237 218 CC--KL-ENVPDTLGQVESLEELDISETA-VR-RPPSSVFLMKNLRTLSFSGC 265 (611)
Q Consensus 218 c~--~l-~~~p~~l~~l~~L~~L~l~~~~-~~-~~~~~~~~l~~L~~L~l~~c 265 (611)
|. .. ..++..++.+++|+.|++++|. +. ..+..+..+++|++|++++|
T Consensus 205 ~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 205 YRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC 257 (336)
T ss_dssp CGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred CcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence 52 11 2233333444444444444444 22 22333334444444444444
No 83
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.79 E-value=1.8e-18 Score=168.31 Aligned_cols=209 Identities=15% Similarity=0.222 Sum_probs=123.3
Q ss_pred cCcCCcccCCCCCCcEEEcCCCCccccCc-cccCCCCCcEEeccCCCCCCCCcc-cCCCCCCCCEEEecCCCCCccc-cc
Q 007237 79 LRKFPHVVGSMECLQELLLDGTDIKELPL-SIEHLFGLVQLTLNDCKNLSSLPV-AISSFQCLRNLKLSGCSKLKKF-PQ 155 (611)
Q Consensus 79 ~~~lp~~l~~l~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~c~~l~~lp~-~l~~l~~L~~L~L~~~~~l~~~-p~ 155 (611)
...+|. +. .+|++|+++++.++.+|. .+..+++|++|++++|..++.++. .+.++++|++|++++|..+..+ +.
T Consensus 23 l~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~ 99 (239)
T 2xwt_C 23 IQRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD 99 (239)
T ss_dssp CSSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTT
T ss_pred ccccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHH
Confidence 444555 32 377888888888877765 566777777777777654555554 4566777777777763333333 34
Q ss_pred ccCCCCCCCEEeecCccCCCcCcccCCCCCCCEEeccCCcCCcccccCccCCCCCCEEEecCCCCCcccC-cccCCCCCc
Q 007237 156 IVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVP-DTLGQVESL 234 (611)
Q Consensus 156 ~~~~l~~L~~L~L~~~~i~~l~~~l~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~c~~l~~~p-~~l~~l~~L 234 (611)
.+..+++|++|++++|.++.+|. +..+++|+ .|++|++++|..+..++ ..+..+++|
T Consensus 100 ~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~---------------------~L~~L~l~~N~~l~~i~~~~~~~l~~L 157 (239)
T 2xwt_C 100 ALKELPLLKFLGIFNTGLKMFPD-LTKVYSTD---------------------IFFILEITDNPYMTSIPVNAFQGLCNE 157 (239)
T ss_dssp SEECCTTCCEEEEEEECCCSCCC-CTTCCBCC---------------------SEEEEEEESCTTCCEECTTTTTTTBSS
T ss_pred HhCCCCCCCEEeCCCCCCccccc-cccccccc---------------------cccEEECCCCcchhhcCcccccchhcc
Confidence 55666666666666666666554 44444444 11155555552333333 235666667
Q ss_pred c-EEeccCCCcccCCccccccCCCcEEEcCCCCCCCCCCcccccccccccCCccchhhccCCCCCCCCCCCEEeccCCC-
Q 007237 235 E-ELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCG- 312 (611)
Q Consensus 235 ~-~L~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~- 312 (611)
+ .|++++|.+..+|...... ++|+.|++++|.
T Consensus 158 ~~~L~l~~n~l~~i~~~~~~~----------------------------------------------~~L~~L~L~~n~~ 191 (239)
T 2xwt_C 158 TLTLKLYNNGFTSVQGYAFNG----------------------------------------------TKLDAVYLNKNKY 191 (239)
T ss_dssp EEEEECCSCCCCEECTTTTTT----------------------------------------------CEEEEEECTTCTT
T ss_pred eeEEEcCCCCCcccCHhhcCC----------------------------------------------CCCCEEEcCCCCC
Confidence 7 7777666665554432222 345555555553
Q ss_pred CCCCCCCCCCCCC-CCCCEEEcCCCCCCcCCcccccCCCcCeeecccccc
Q 007237 313 LGEGAIPSDIGNL-HSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKR 361 (611)
Q Consensus 313 l~~~~~~~~l~~l-~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~ 361 (611)
+. ...+..+..+ ++|+.|++++|+++.+|.. .+++|+.|++.++..
T Consensus 192 l~-~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 192 LT-VIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNTWT 238 (239)
T ss_dssp CC-EECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC--
T ss_pred cc-cCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCccC
Confidence 43 2223456667 7788888888888777764 677777777777653
No 84
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.78 E-value=9.1e-19 Score=177.47 Aligned_cols=198 Identities=21% Similarity=0.182 Sum_probs=167.8
Q ss_pred CCCccEEEecCCcCcCcCCccc--CCCCCCcEEEcCCCCcccc-C----ccccCCCCCcEEeccCCCCCCCCcccCCCCC
Q 007237 65 VESLKILILSGCLKLRKFPHVV--GSMECLQELLLDGTDIKEL-P----LSIEHLFGLVQLTLNDCKNLSSLPVAISSFQ 137 (611)
Q Consensus 65 l~~L~~L~Ls~~~~~~~lp~~l--~~l~~L~~L~L~~~~i~~l-p----~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~ 137 (611)
+++|++|++++|.+.+..|..+ ..+++|++|++++|.+... + ..+..+++|++|++++|......|..++.++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 4679999999999999999888 9999999999999999852 2 3445799999999999876555667788999
Q ss_pred CCCEEEecCCCCCcc--c--ccccCCCCCCCEEeecCccCCCcCcc----cCCCCCCCEEeccCCcCCcccccCccCC--
Q 007237 138 CLRNLKLSGCSKLKK--F--PQIVTTMEDLSELNLDGTSITEVPSS----IELLPGLELLNLNDCKNFARVPSSINGL-- 207 (611)
Q Consensus 138 ~L~~L~L~~~~~l~~--~--p~~~~~l~~L~~L~L~~~~i~~l~~~----l~~l~~L~~L~L~~~~~~~~lp~~i~~l-- 207 (611)
+|++|++++|...+. + +..++.+++|++|++++|.++.++.. ++.+++|++|++++|...+..|..+..+
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~ 249 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMW 249 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccC
Confidence 999999999976542 2 23347899999999999999877653 5778999999999999888878777776
Q ss_pred -CCCCEEEecCCCCCcccCcccCCCCCccEEeccCCCcccCCccccccCCCcEEEcCCCC
Q 007237 208 -KSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCN 266 (611)
Q Consensus 208 -~~L~~L~l~~c~~l~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~c~ 266 (611)
++|++|++++|... .+|..+. ++|+.|++++|.+..+|. ...+++|+.|++++|.
T Consensus 250 ~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 250 SSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVDNLTLDGNP 305 (310)
T ss_dssp CTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCSCEECSSTT
T ss_pred cCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCCch-hhhCCCccEEECcCCC
Confidence 69999999998765 7787764 899999999999998866 6788999999999987
No 85
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.78 E-value=3e-18 Score=173.34 Aligned_cols=196 Identities=15% Similarity=0.230 Sum_probs=95.0
Q ss_pred CCCCcccccccccccccccccCccccccCccccCCCccEEEecCCcCcCcCCcccCCCCCCcEEEcCCCCccccCccccC
Q 007237 32 FTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEH 111 (611)
Q Consensus 32 ~~~~~~L~~L~L~~c~~l~~i~~s~~~l~~L~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~L~~~~i~~lp~~~~~ 111 (611)
++.+++|++|++++| .++.++ . +..+++|++|++++|.+.+..+ +..+++|++|++++|.++.++ .+..
T Consensus 37 ~~~l~~L~~L~l~~~-~i~~l~-~------~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~ 105 (308)
T 1h6u_A 37 QADLDGITTLSAFGT-GVTTIE-G------VQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS-AIAG 105 (308)
T ss_dssp HHHHHTCCEEECTTS-CCCCCT-T------GGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG-GGTT
T ss_pred HHHcCCcCEEEeeCC-CccCch-h------hhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCch-hhcC
Confidence 344555555555554 333332 1 2224555555555554433222 555555555555555555543 3555
Q ss_pred CCCCcEEeccCCCCCCCCcccCCCCCCCCEEEecCCCCCcccccccCCCCCCCEEeecCccCCCcCcccCCCCCCCEEec
Q 007237 112 LFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNL 191 (611)
Q Consensus 112 l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~l~~~l~~l~~L~~L~L 191 (611)
+++|++|++++|. +..++. +..+++|++|++++|... .++. +..+++|++|++++|.++.++. +..+++|+.|++
T Consensus 106 l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~-~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l 180 (308)
T 1h6u_A 106 LQSIKTLDLTSTQ-ITDVTP-LAGLSNLQVLYLDLNQIT-NISP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKA 180 (308)
T ss_dssp CTTCCEEECTTSC-CCCCGG-GTTCTTCCEEECCSSCCC-CCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEEC
T ss_pred CCCCCEEECCCCC-CCCchh-hcCCCCCCEEECCCCccC-cCcc-ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEEC
Confidence 5555555555543 334443 445555555555554322 2222 4455555555555555555444 455555555555
Q ss_pred cCCcCCcccccCccCCCCCCEEEecCCCCCcccCcccCCCCCccEEeccCCCcccC
Q 007237 192 NDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRP 247 (611)
Q Consensus 192 ~~~~~~~~lp~~i~~l~~L~~L~l~~c~~l~~~p~~l~~l~~L~~L~l~~~~~~~~ 247 (611)
++|...+. +. +..+++|+.|++++|..... + .+..+++|+.|++++|.+...
T Consensus 181 ~~n~l~~~-~~-l~~l~~L~~L~L~~N~l~~~-~-~l~~l~~L~~L~l~~N~i~~~ 232 (308)
T 1h6u_A 181 DDNKISDI-SP-LASLPNLIEVHLKNNQISDV-S-PLANTSNLFIVTLTNQTITNQ 232 (308)
T ss_dssp CSSCCCCC-GG-GGGCTTCCEEECTTSCCCBC-G-GGTTCTTCCEEEEEEEEEECC
T ss_pred CCCccCcC-hh-hcCCCCCCEEEccCCccCcc-c-cccCCCCCCEEEccCCeeecC
Confidence 55543322 21 44455555555555433222 2 144455555555555554443
No 86
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.76 E-value=2.2e-19 Score=184.11 Aligned_cols=241 Identities=20% Similarity=0.267 Sum_probs=163.6
Q ss_pred CCcEEEcCCCCccccCccccCC--CCCcEEeccCCCCCCCCcccCCCCCCCCEEEecCCCCCcc-cccccCCCCCCCEEe
Q 007237 91 CLQELLLDGTDIKELPLSIEHL--FGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKK-FPQIVTTMEDLSELN 167 (611)
Q Consensus 91 ~L~~L~L~~~~i~~lp~~~~~l--~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~~l~~-~p~~~~~l~~L~~L~ 167 (611)
.++.++++++.+. +..+..+ .+++.|+++++..... +..+..+++|++|++++|..... ++..+..+++|++|+
T Consensus 48 ~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~-~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 48 LWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQP-LAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp TSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSC-CCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred hheeeccccccCC--HHHHHhhhhccceEEEcCCcccccc-chhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 4788999988776 4556666 7899999988654443 43466789999999998875544 777888888999999
Q ss_pred ecCccCC-CcCcccCCCCCCCEEeccCCcCCc--ccccCccCCCCCCEEEecCCCCCcc--cCcccCCCC-CccEEeccC
Q 007237 168 LDGTSIT-EVPSSIELLPGLELLNLNDCKNFA--RVPSSINGLKSLKTLNLSGCCKLEN--VPDTLGQVE-SLEELDISE 241 (611)
Q Consensus 168 L~~~~i~-~l~~~l~~l~~L~~L~L~~~~~~~--~lp~~i~~l~~L~~L~l~~c~~l~~--~p~~l~~l~-~L~~L~l~~ 241 (611)
+++|.++ ..+..++.+++|++|++++|.... .++..+..+++|++|++++|..+.. ++..++.++ +|+.|++++
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~ 204 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG 204 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence 9988877 456667788888889888885443 3566677788888888888844432 566677778 888888888
Q ss_pred CC--c--ccCCccccccCCCcEEEcCCCCCCCCCCcccccccccccCCccchhhccCCCCCCCCCCCEEeccCCC-CCCC
Q 007237 242 TA--V--RRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCG-LGEG 316 (611)
Q Consensus 242 ~~--~--~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~-l~~~ 316 (611)
|. + ..++..+..+++|++|++++|..... ..++.+..+++|++|++++|. +.+
T Consensus 205 ~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~---------------------~~~~~l~~l~~L~~L~l~~~~~~~~- 262 (336)
T 2ast_B 205 YRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKN---------------------DCFQEFFQLNYLQHLSLSRCYDIIP- 262 (336)
T ss_dssp CGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCG---------------------GGGGGGGGCTTCCEEECTTCTTCCG-
T ss_pred CcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCH---------------------HHHHHHhCCCCCCEeeCCCCCCCCH-
Confidence 84 3 34566666778888888887763211 112234566778888887774 321
Q ss_pred CCCCCCCCCCCCCEEEcCCCCCCcCCc-ccccC-CCcCeeeccccc
Q 007237 317 AIPSDIGNLHSLNELYLSKNNFVTLPA-SINSL-LNLKELEMEDCK 360 (611)
Q Consensus 317 ~~~~~l~~l~~L~~L~L~~n~l~~lp~-~i~~l-~~L~~L~L~~c~ 360 (611)
.....+..+++|+.|++++| ++. .+..+ .+|+.|++++|.
T Consensus 263 ~~~~~l~~~~~L~~L~l~~~----i~~~~~~~l~~~l~~L~l~~n~ 304 (336)
T 2ast_B 263 ETLLELGEIPTLKTLQVFGI----VPDGTLQLLKEALPHLQINCSH 304 (336)
T ss_dssp GGGGGGGGCTTCCEEECTTS----SCTTCHHHHHHHSTTSEESCCC
T ss_pred HHHHHHhcCCCCCEEeccCc----cCHHHHHHHHhhCcceEEeccc
Confidence 11124666777777777777 222 23333 235555565544
No 87
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.76 E-value=1e-17 Score=169.39 Aligned_cols=190 Identities=18% Similarity=0.267 Sum_probs=164.4
Q ss_pred cCCCccEEEecCCcCcCcCCcccCCCCCCcEEEcCCCCccccCccccCCCCCcEEeccCCCCCCCCcccCCCCCCCCEEE
Q 007237 64 FVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLK 143 (611)
Q Consensus 64 ~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~ 143 (611)
.+++|++|++++|.+.. ++ .+..+++|++|++++|.+..++. +..+++|++|++++|. ++.++ .+..+++|++|+
T Consensus 39 ~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~ 113 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-LKNVS-AIAGLQSIKTLD 113 (308)
T ss_dssp HHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCEEE
T ss_pred HcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc-CCCch-hhcCCCCCCEEE
Confidence 37889999999997654 44 58889999999999999999988 9999999999999976 67776 488899999999
Q ss_pred ecCCCCCcccccccCCCCCCCEEeecCccCCCcCcccCCCCCCCEEeccCCcCCcccccCccCCCCCCEEEecCCCCCcc
Q 007237 144 LSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLEN 223 (611)
Q Consensus 144 L~~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~l~~~l~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~c~~l~~ 223 (611)
+++|... .++. +..+++|++|++++|.++.++. +..+++|+.|++++|.... ++. +..+++|+.|++++|....
T Consensus 114 l~~n~l~-~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~- 187 (308)
T 1h6u_A 114 LTSTQIT-DVTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKISD- 187 (308)
T ss_dssp CTTSCCC-CCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-
T ss_pred CCCCCCC-Cchh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccCc-
Confidence 9998654 4554 8899999999999999998877 8899999999999997654 444 8899999999999986644
Q ss_pred cCcccCCCCCccEEeccCCCcccCCccccccCCCcEEEcCCCC
Q 007237 224 VPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCN 266 (611)
Q Consensus 224 ~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~c~ 266 (611)
++. +..+++|+.|++++|.+..+++ +..+++|+.|++++|.
T Consensus 188 ~~~-l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 188 ISP-LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQT 228 (308)
T ss_dssp CGG-GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEE
T ss_pred Chh-hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCe
Confidence 443 7889999999999999998874 7889999999999986
No 88
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.75 E-value=4.8e-20 Score=192.94 Aligned_cols=64 Identities=27% Similarity=0.324 Sum_probs=39.7
Q ss_pred CCCCCCCCEEeccCCCCCCC---CCCCCC--CCCCCCCEEEcCCCCCCc-----CCccc-ccCCCcCeeeccccc
Q 007237 297 LSGLRSLTKLDLSDCGLGEG---AIPSDI--GNLHSLNELYLSKNNFVT-----LPASI-NSLLNLKELEMEDCK 360 (611)
Q Consensus 297 l~~l~~L~~L~Ls~~~l~~~---~~~~~l--~~l~~L~~L~L~~n~l~~-----lp~~i-~~l~~L~~L~L~~c~ 360 (611)
+..+++|+.|++++|.+... .++..+ +.+++|+.|+|++|.+.. +|..+ .++++|++|++++|+
T Consensus 240 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 240 LKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp GGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred HccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 34556666666666666421 123344 336777777777777775 66666 456777777777765
No 89
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.74 E-value=5.7e-17 Score=167.12 Aligned_cols=224 Identities=15% Similarity=0.182 Sum_probs=115.8
Q ss_pred cEEEecCCcCcCcCCcccCCCCCCcEEEcCCCCccccCc-cccCCCCCcEEeccCCCCCCCCcc-cCCCCCCCCEEEecC
Q 007237 69 KILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPL-SIEHLFGLVQLTLNDCKNLSSLPV-AISSFQCLRNLKLSG 146 (611)
Q Consensus 69 ~~L~Ls~~~~~~~lp~~l~~l~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~c~~l~~lp~-~l~~l~~L~~L~L~~ 146 (611)
++++.+++.+ ..+|..+ .+++++|+|++|.|+.+|. .|.++++|++|+|++|...+.+|. .+.++++|+.+..
T Consensus 12 ~~v~C~~~~L-t~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~-- 86 (350)
T 4ay9_X 12 RVFLCQESKV-TEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI-- 86 (350)
T ss_dssp TEEEEESTTC-CSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEE--
T ss_pred CEEEecCCCC-CccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhc--
Confidence 3444444332 2344433 2355555555555555553 345555555555555544444443 2344444443332
Q ss_pred CCCCcccccccCCCCCCCEEeecCccCCCcC-cccCCCCCCCEEeccCCcCCcccccCccCCCCCCEEEecCCCCCcccC
Q 007237 147 CSKLKKFPQIVTTMEDLSELNLDGTSITEVP-SSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVP 225 (611)
Q Consensus 147 ~~~l~~~p~~~~~l~~L~~L~L~~~~i~~l~-~~l~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~c~~l~~~p 225 (611)
+.+|.++.++ ..+..+++|++|++++|......+..+....++..|++.++..+..++
T Consensus 87 ---------------------~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~ 145 (350)
T 4ay9_X 87 ---------------------EKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIE 145 (350)
T ss_dssp ---------------------EEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEEC
T ss_pred ---------------------ccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhcccccccccc
Confidence 2334444432 224444455555555444333333333344455666666655555554
Q ss_pred c-ccCCC-CCccEEeccCCCcccCCccccccCCCcEEEcCCCCCCCCCCcccccccccccCCccchhhccCCCCCCCCCC
Q 007237 226 D-TLGQV-ESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSL 303 (611)
Q Consensus 226 ~-~l~~l-~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L 303 (611)
. .+..+ ..++.|++++|.+..++.......+|+.|.+.+++
T Consensus 146 ~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n------------------------------------- 188 (350)
T 4ay9_X 146 RNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNN------------------------------------- 188 (350)
T ss_dssp TTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCT-------------------------------------
T ss_pred ccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCC-------------------------------------
Confidence 3 23333 35777788888777776655555555555554433
Q ss_pred CEEeccCCCCCCCCCC-CCCCCCCCCCEEEcCCCCCCcCCcccccCCCcCeeecccccccCcCCC
Q 007237 304 TKLDLSDCGLGEGAIP-SDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKRLQFLPQ 367 (611)
Q Consensus 304 ~~L~Ls~~~l~~~~~~-~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~ 367 (611)
.+ +.+| ..+..+++|+.|+|++|+++.+|.. .+.+|+.|.+.+|..++.+|.
T Consensus 189 --------~l--~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~~l~~lP~ 241 (350)
T 4ay9_X 189 --------NL--EELPNDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARSTYNLKKLPT 241 (350)
T ss_dssp --------TC--CCCCTTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTTCTTCCCCCC
T ss_pred --------cc--cCCCHHHhccCcccchhhcCCCCcCccChh--hhccchHhhhccCCCcCcCCC
Confidence 22 2233 3456667777777777777777653 355666666666666666654
No 90
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.74 E-value=4.3e-20 Score=193.30 Aligned_cols=232 Identities=16% Similarity=0.172 Sum_probs=135.3
Q ss_pred CCCCccccccccccccccccc-CccccccCccccCCCccEEEecCCcC---cCcCCccc-------CCCCCCcEEEcCCC
Q 007237 32 FTEAPNLEELYLEGCTKLRKV-HPSLLLHNKLIFVESLKILILSGCLK---LRKFPHVV-------GSMECLQELLLDGT 100 (611)
Q Consensus 32 ~~~~~~L~~L~L~~c~~l~~i-~~s~~~l~~L~~l~~L~~L~Ls~~~~---~~~lp~~l-------~~l~~L~~L~L~~~ 100 (611)
+..+++|+.|+|++| .++.. +..+. ..+..+++|++|+|++|.. .+.+|..+ ..+++|++|++++|
T Consensus 28 l~~~~~L~~L~L~~n-~i~~~~~~~l~--~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n 104 (386)
T 2ca6_A 28 LLEDDSVKEIVLSGN-TIGTEAARWLS--ENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN 104 (386)
T ss_dssp HHHCSCCCEEECTTS-EECHHHHHHHH--HTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred HhcCCCccEEECCCC-CCCHHHHHHHH--HHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC
Confidence 344566666666665 22221 11111 1123356666666666532 23334333 56666666766666
Q ss_pred Cccc-----cCccccCCCCCcEEeccCCCCCC----CCcccCCCC---------CCCCEEEecCCCCC-cccc---cccC
Q 007237 101 DIKE-----LPLSIEHLFGLVQLTLNDCKNLS----SLPVAISSF---------QCLRNLKLSGCSKL-KKFP---QIVT 158 (611)
Q Consensus 101 ~i~~-----lp~~~~~l~~L~~L~L~~c~~l~----~lp~~l~~l---------~~L~~L~L~~~~~l-~~~p---~~~~ 158 (611)
.+.. +|..+..+++|++|++++|.... .++..+..+ ++|++|++++|... ..++ ..+.
T Consensus 105 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~ 184 (386)
T 2ca6_A 105 AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ 184 (386)
T ss_dssp CCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHH
Confidence 6654 55666666677777776654321 122222223 67777777776554 2333 3455
Q ss_pred CCCCCCEEeecCccCCC------cCcccCCCCCCCEEeccCCcCC----cccccCccCCCCCCEEEecCCCCCcc----c
Q 007237 159 TMEDLSELNLDGTSITE------VPSSIELLPGLELLNLNDCKNF----ARVPSSINGLKSLKTLNLSGCCKLEN----V 224 (611)
Q Consensus 159 ~l~~L~~L~L~~~~i~~------l~~~l~~l~~L~~L~L~~~~~~----~~lp~~i~~l~~L~~L~l~~c~~l~~----~ 224 (611)
.+++|++|++++|.++. .+..+..+++|+.|++++|... ..+|..+..+++|++|++++|..... +
T Consensus 185 ~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l 264 (386)
T 2ca6_A 185 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAV 264 (386)
T ss_dssp HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHH
T ss_pred hCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHH
Confidence 66677777777776661 2225666777777777777653 45566666777777777777765443 4
Q ss_pred Cccc--CCCCCccEEeccCCCccc-----CCccc-cccCCCcEEEcCCCC
Q 007237 225 PDTL--GQVESLEELDISETAVRR-----PPSSV-FLMKNLRTLSFSGCN 266 (611)
Q Consensus 225 p~~l--~~l~~L~~L~l~~~~~~~-----~~~~~-~~l~~L~~L~l~~c~ 266 (611)
+..+ +.+++|+.|++++|.+.. +|..+ ..+++|++|++++|.
T Consensus 265 ~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 265 VDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp HHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred HHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 4455 337777777777777775 66666 446778888877776
No 91
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.73 E-value=1.8e-17 Score=167.89 Aligned_cols=199 Identities=21% Similarity=0.237 Sum_probs=110.1
Q ss_pred CCCEEEecCCCCCccccccc--CCCCCCCEEeecCccCCCcC-----cccCCCCCCCEEeccCCcCCcccccCccCCCCC
Q 007237 138 CLRNLKLSGCSKLKKFPQIV--TTMEDLSELNLDGTSITEVP-----SSIELLPGLELLNLNDCKNFARVPSSINGLKSL 210 (611)
Q Consensus 138 ~L~~L~L~~~~~l~~~p~~~--~~l~~L~~L~L~~~~i~~l~-----~~l~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L 210 (611)
+|++|++++|...+..|..+ ..+++|++|++++|.++... ..+..+++|++|++++|...+..+..+..+++|
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 171 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL 171 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence 34444444444333344333 44444444444444444211 112345555555555555544444455555555
Q ss_pred CEEEecCCCCCcc--c--CcccCCCCCccEEeccCCCcccCCcc----ccccCCCcEEEcCCCCCCCCCCcccccccccc
Q 007237 211 KTLNLSGCCKLEN--V--PDTLGQVESLEELDISETAVRRPPSS----VFLMKNLRTLSFSGCNGPPSSASWHLHLPFNL 282 (611)
Q Consensus 211 ~~L~l~~c~~l~~--~--p~~l~~l~~L~~L~l~~~~~~~~~~~----~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~ 282 (611)
++|++++|...+. + +..++.+++|++|++++|.+..++.. +..+++|++|++++|.......
T Consensus 172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p---------- 241 (310)
T 4glp_A 172 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVN---------- 241 (310)
T ss_dssp CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCC----------
T ss_pred CEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccch----------
Confidence 5555555543321 1 12234556666666666666544332 3455667777776665221100
Q ss_pred cCCccchhhccCCCCCCCCCCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCCcCCcccccCCCcCeeeccccc
Q 007237 283 MGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCK 360 (611)
Q Consensus 283 ~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~ 360 (611)
..+..+..+++|++|++++|.+. .+|..+. ++|+.|+|++|+++.+|. +..+++|+.|++++++
T Consensus 242 ---------~~~~~~~~~~~L~~L~Ls~N~l~--~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 242 ---------PSAPRCMWSSALNSLNLSFAGLE--QVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVDNLTLDGNP 305 (310)
T ss_dssp ---------SCCSSCCCCTTCCCEECCSSCCC--SCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCSCEECSSTT
T ss_pred ---------hhHHhccCcCcCCEEECCCCCCC--chhhhhc--CCCCEEECCCCcCCCCch-hhhCCCccEEECcCCC
Confidence 00111223368888888888885 4676664 788888888888888765 6778888888888876
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.72 E-value=1.7e-16 Score=155.56 Aligned_cols=155 Identities=19% Similarity=0.174 Sum_probs=68.5
Q ss_pred CccEEEecCCcCcCcCCcccCCCCCCcEEEcCCCCccccCc-cccCCCCCcEEeccCCCCCCCCcccCCCCCCCCEEEec
Q 007237 67 SLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPL-SIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLS 145 (611)
Q Consensus 67 ~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~ 145 (611)
+|++|+|++|.+.+..+..+..+++|++|++++|.++.++. .+..+++|++|++++
T Consensus 36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~----------------------- 92 (251)
T 3m19_A 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN----------------------- 92 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT-----------------------
T ss_pred CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC-----------------------
Confidence 44445555544444444444445555555555554444332 234444444444444
Q ss_pred CCCCCcccccccCCCCCCCEEeecCccCCCcCcc-cCCCCCCCEEeccCCcCCcccccCccCCCCCCEEEecCCCCCccc
Q 007237 146 GCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSS-IELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENV 224 (611)
Q Consensus 146 ~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~l~~~-l~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~c~~l~~~ 224 (611)
|......+..+..+++|++|++++|.++.++.. +..+++|+.|++++|...+..+..+..+++|++|++++|......
T Consensus 93 -n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 93 -NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171 (251)
T ss_dssp -SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred -CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence 332222223333444444444444444443332 234444444444444333322333444445555555544433333
Q ss_pred CcccCCCCCccEEeccCCCcc
Q 007237 225 PDTLGQVESLEELDISETAVR 245 (611)
Q Consensus 225 p~~l~~l~~L~~L~l~~~~~~ 245 (611)
+..+..+++|+.|++++|.+.
T Consensus 172 ~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 172 HGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp TTTTTTCTTCCEEECCSCCBC
T ss_pred HHHHhCCCCCCEEEeeCCcee
Confidence 334455555555555555544
No 93
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.72 E-value=2.6e-16 Score=154.21 Aligned_cols=175 Identities=17% Similarity=0.195 Sum_probs=145.8
Q ss_pred CCcEEEcCCCCccccCccccCCCCCcEEeccCCCCCCCCcccCCCCCCCCEEEecCCCCCcccccccCCCCCCCEEeecC
Q 007237 91 CLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDG 170 (611)
Q Consensus 91 ~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~~~~l~~L~~L~L~~ 170 (611)
..++++++++.++.+|..+. ++|+.|++++|......+..+.++++|++|++++|......+..+..+++|++|++++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 45667777777778877664 5788888888665544555688899999999999877777777789999999999999
Q ss_pred ccCCCcCcc-cCCCCCCCEEeccCCcCCcccccCccCCCCCCEEEecCCCCCcccCcccCCCCCccEEeccCCCcccCCc
Q 007237 171 TSITEVPSS-IELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPS 249 (611)
Q Consensus 171 ~~i~~l~~~-l~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~c~~l~~~p~~l~~l~~L~~L~l~~~~~~~~~~ 249 (611)
|.++.++.. +..+++|++|++++|......+..+..+++|++|++++|......+..++.+++|+.|++++|.+..++.
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 172 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH 172 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH
Confidence 999988754 7899999999999998776555667899999999999987665555579999999999999999998876
Q ss_pred -cccccCCCcEEEcCCCCC
Q 007237 250 -SVFLMKNLRTLSFSGCNG 267 (611)
Q Consensus 250 -~~~~l~~L~~L~l~~c~~ 267 (611)
.+..+++|+.|++++|..
T Consensus 173 ~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 173 GAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp TTTTTCTTCCEEECCSCCB
T ss_pred HHHhCCCCCCEEEeeCCce
Confidence 577899999999999873
No 94
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.71 E-value=6.2e-19 Score=182.81 Aligned_cols=176 Identities=15% Similarity=0.094 Sum_probs=98.4
Q ss_pred EEecCCcCcCcCCcccCCCCCCcEEEcCCCCccccC-----ccccCCC-CCcEEeccCCCCCCCCcccCCCC-----CCC
Q 007237 71 LILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELP-----LSIEHLF-GLVQLTLNDCKNLSSLPVAISSF-----QCL 139 (611)
Q Consensus 71 L~Ls~~~~~~~lp~~l~~l~~L~~L~L~~~~i~~lp-----~~~~~l~-~L~~L~L~~c~~l~~lp~~l~~l-----~~L 139 (611)
++++.+.+.+.+|..+...++|++|++++|.++..+ ..+..++ +|++|++++|......+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 456666666666776666667777777777777655 4556666 67777777764333334334332 677
Q ss_pred CEEEecCCCCCcccccc----cCCC-CCCCEEeecCccCCCcCcc-----cCC-CCCCCEEeccCCcCCc----ccccCc
Q 007237 140 RNLKLSGCSKLKKFPQI----VTTM-EDLSELNLDGTSITEVPSS-----IEL-LPGLELLNLNDCKNFA----RVPSSI 204 (611)
Q Consensus 140 ~~L~L~~~~~l~~~p~~----~~~l-~~L~~L~L~~~~i~~l~~~-----l~~-l~~L~~L~L~~~~~~~----~lp~~i 204 (611)
++|++++|......+.. +..+ ++|++|++++|.++..+.. +.. .++|++|++++|.... .++..+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 77777776544433332 3333 6677777777776654431 333 2466677776665442 222223
Q ss_pred cCCC-CCCEEEecCCCCCcccCc----ccCCC-CCccEEeccCCCccc
Q 007237 205 NGLK-SLKTLNLSGCCKLENVPD----TLGQV-ESLEELDISETAVRR 246 (611)
Q Consensus 205 ~~l~-~L~~L~l~~c~~l~~~p~----~l~~l-~~L~~L~l~~~~~~~ 246 (611)
..++ +|++|++++|......+. .+... ++|+.|++++|.+..
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~ 210 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGL 210 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCCh
Confidence 3333 566666666544333222 22223 355555555555543
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.69 E-value=3.6e-16 Score=161.14 Aligned_cols=198 Identities=21% Similarity=0.168 Sum_probs=99.6
Q ss_pred cccccccccccccccccCccccccCccccCCCccEEEecCCcCcCcCCc-ccCCCCCCcE-EEcCCCCccccC-ccccCC
Q 007237 36 PNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPH-VVGSMECLQE-LLLDGTDIKELP-LSIEHL 112 (611)
Q Consensus 36 ~~L~~L~L~~c~~l~~i~~s~~~l~~L~~l~~L~~L~Ls~~~~~~~lp~-~l~~l~~L~~-L~L~~~~i~~lp-~~~~~l 112 (611)
+++++|+|+++ .++.+|... +..+++|++|+|++|.+.+.+|. .+.++++|+. +.+.++++..++ ..+..+
T Consensus 30 ~~l~~L~Ls~N-~i~~i~~~~-----f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l 103 (350)
T 4ay9_X 30 RNAIELRFVLT-KLRVIQKGA-----FSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNL 103 (350)
T ss_dssp TTCSEEEEESC-CCSEECTTS-----STTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCC
T ss_pred CCCCEEEccCC-cCCCcCHHH-----HcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhc
Confidence 45555555554 455554321 12245555555555555444332 3444544443 333344555442 334455
Q ss_pred CCCcEEeccCCCCCCCCcc-cCCCCCCCCEEEecCCCCCcccccccCCCCCCCEEeecCccCCCcCcc-cCCC-CCCCEE
Q 007237 113 FGLVQLTLNDCKNLSSLPV-AISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSS-IELL-PGLELL 189 (611)
Q Consensus 113 ~~L~~L~L~~c~~l~~lp~-~l~~l~~L~~L~L~~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~l~~~-l~~l-~~L~~L 189 (611)
++|++|++++|. +..+|. .+....++..|++.++.. +..++.. +..+ ..++.|
T Consensus 104 ~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~l~l~~~~~-----------------------i~~l~~~~f~~~~~~l~~L 159 (350)
T 4ay9_X 104 PNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNIN-----------------------IHTIERNSFVGLSFESVIL 159 (350)
T ss_dssp TTCCEEEEEEEC-CSSCCCCTTCCBSSCEEEEEESCTT-----------------------CCEECTTSSTTSBSSCEEE
T ss_pred cccccccccccc-cccCCchhhcccchhhhhhhccccc-----------------------cccccccchhhcchhhhhh
Confidence 555555555432 223222 222233444444444333 3333321 2222 245555
Q ss_pred eccCCcCCcccccCccCCCCCCEEEecCCCCCcccCc-ccCCCCCccEEeccCCCcccCCccccccCCCcEEEcCCCC
Q 007237 190 NLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPD-TLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCN 266 (611)
Q Consensus 190 ~L~~~~~~~~lp~~i~~l~~L~~L~l~~c~~l~~~p~-~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~c~ 266 (611)
++++|.. ..+|..+....+|++|++.++..++.+|. .++.+++|+.|++++|.++.+|.. .+.+|+.|.+.++.
T Consensus 160 ~L~~N~i-~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~ 234 (350)
T 4ay9_X 160 WLNKNGI-QEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARSTY 234 (350)
T ss_dssp ECCSSCC-CEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTTCT
T ss_pred ccccccc-cCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh--hhccchHhhhccCC
Confidence 5555443 23444444445666666666666666654 356777777777777777777753 35677777776655
No 96
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.66 E-value=2.2e-15 Score=163.86 Aligned_cols=177 Identities=20% Similarity=0.261 Sum_probs=145.6
Q ss_pred CCccEEEecCCcCcCcCCcccCCCCCCcEEEcCCCCccccCccccCCCCCcEEeccCCCCCCCCcccCCCCCCCCEEEec
Q 007237 66 ESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLS 145 (611)
Q Consensus 66 ~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~ 145 (611)
.+|++|++++|.+.+ +|..+. ++|++|++++|.++.+| ..+++|++|++++|. ++.+|. +.+ +|+.|+++
T Consensus 59 ~~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~-l~~ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNR-LSTLPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TTCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSC-CSCCCC-CCT--TCCEEECC
T ss_pred CCccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCC-CCCcch-hhc--CCCEEECC
Confidence 389999999988765 777553 78999999999999998 557899999999864 666887 654 99999999
Q ss_pred CCCCCcccccccCCCCCCCEEeecCccCCCcCcccCCCCCCCEEeccCCcCCcccccCccCCCCCCEEEecCCCCCcccC
Q 007237 146 GCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVP 225 (611)
Q Consensus 146 ~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~l~~~l~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~c~~l~~~p 225 (611)
+|...+ +|. .+++|++|++++|.++.+|. .+++|+.|++++|...+ +|. +. ++|+.|++++|.. ..+|
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L-~~lp 196 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLL-ESLP 196 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCC-SSCC
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCC-Cchh
Confidence 975444 776 68899999999999999887 57899999999987655 777 65 8999999999854 4777
Q ss_pred cccCCCCCc-------cEEeccCCCcccCCccccccCCCcEEEcCCCCC
Q 007237 226 DTLGQVESL-------EELDISETAVRRPPSSVFLMKNLRTLSFSGCNG 267 (611)
Q Consensus 226 ~~l~~l~~L-------~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~ 267 (611)
. +.. +| +.|++++|.+..+|..+..+++|+.|++++|..
T Consensus 197 ~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 197 A-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPL 242 (571)
T ss_dssp C-CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSC
T ss_pred h-HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcC
Confidence 7 554 67 999999999999999999999999999999873
No 97
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.66 E-value=9.1e-18 Score=173.98 Aligned_cols=247 Identities=17% Similarity=0.146 Sum_probs=158.9
Q ss_pred EEEccCCCCCCcCCCCCCCc-ccccccccccccccccCccccccCccccCC-CccEEEecCCcCcCcCCcccCCC-----
Q 007237 17 VMKLSHSENLIKTPDFTEAP-NLEELYLEGCTKLRKVHPSLLLHNKLIFVE-SLKILILSGCLKLRKFPHVVGSM----- 89 (611)
Q Consensus 17 ~L~Ls~~~~l~~~~~~~~~~-~L~~L~L~~c~~l~~i~~s~~~l~~L~~l~-~L~~L~Ls~~~~~~~lp~~l~~l----- 89 (611)
+.+++++.....+|.+...+ +|++|+|++| .++..+... ....+..++ +|++|+|++|.+....+..+..+
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~-l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~ 79 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLN-NLYSISTVE-LIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIP 79 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTS-CGGGSCHHH-HHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSC
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCC-CCChHHHHH-HHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccC
Confidence 35666765555556554444 4888888887 355544210 012233456 78888888887776656555553
Q ss_pred CCCcEEEcCCCCccccCcc-----ccCC-CCCcEEeccCCCCCCCCc-cc----CCC-CCCCCEEEecCCCCCc----cc
Q 007237 90 ECLQELLLDGTDIKELPLS-----IEHL-FGLVQLTLNDCKNLSSLP-VA----ISS-FQCLRNLKLSGCSKLK----KF 153 (611)
Q Consensus 90 ~~L~~L~L~~~~i~~lp~~-----~~~l-~~L~~L~L~~c~~l~~lp-~~----l~~-l~~L~~L~L~~~~~l~----~~ 153 (611)
++|++|++++|.++..+.. +..+ ++|++|++++|.. +..+ .. +.. .++|++|++++|.... .+
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l-~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l 158 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDF-SSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDEL 158 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCG-GGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHH
T ss_pred CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcC-CcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHH
Confidence 7888888888888754432 4445 7888888888663 3333 22 333 2588888888876543 33
Q ss_pred ccccCCCC-CCCEEeecCccCCCcCc-----ccCCC-CCCCEEeccCCcCCcc----cccCccC-CCCCCEEEecCCCCC
Q 007237 154 PQIVTTME-DLSELNLDGTSITEVPS-----SIELL-PGLELLNLNDCKNFAR----VPSSING-LKSLKTLNLSGCCKL 221 (611)
Q Consensus 154 p~~~~~l~-~L~~L~L~~~~i~~l~~-----~l~~l-~~L~~L~L~~~~~~~~----lp~~i~~-l~~L~~L~l~~c~~l 221 (611)
+..+..++ +|++|++++|.++.... .+... ++|+.|++++|..... ++..+.. .++|++|++++|...
T Consensus 159 ~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 238 (362)
T 3goz_A 159 IQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLH 238 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCC
T ss_pred HHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCC
Confidence 44455555 88888888888875443 34445 5888888888875542 4444444 358888888888655
Q ss_pred ccc----CcccCCCCCccEEeccCCCcccC--------CccccccCCCcEEEcCCCC
Q 007237 222 ENV----PDTLGQVESLEELDISETAVRRP--------PSSVFLMKNLRTLSFSGCN 266 (611)
Q Consensus 222 ~~~----p~~l~~l~~L~~L~l~~~~~~~~--------~~~~~~l~~L~~L~l~~c~ 266 (611)
..- ...+..+++|+.|++++|.+..+ +..+..+++|+.|++++|.
T Consensus 239 ~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 239 GPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp CCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred cHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 432 23456778889999988874433 3445567788888898887
No 98
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.65 E-value=1.5e-15 Score=152.09 Aligned_cols=171 Identities=20% Similarity=0.310 Sum_probs=103.2
Q ss_pred CCCccEEEecCCcCcCcCCcccCCCCCCcEEEcCCCCccccCccccCCCCCcEEeccCCCCCCCCcccCCCCCCCCEEEe
Q 007237 65 VESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKL 144 (611)
Q Consensus 65 l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L 144 (611)
+++|++|++++|.+... + .+..+++|++|++++|.++.++. +..+++|++|++++|. ++.+|. +..+++|++|++
T Consensus 45 l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~L 119 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK-VKDLSS-LKDLKKLKSLSL 119 (291)
T ss_dssp HHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCGGG-GTTCTTCCEEEC
T ss_pred cCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCc-CCCChh-hccCCCCCEEEC
Confidence 56666777776654432 2 35666777777777777766665 6667777777776643 444444 666677777777
Q ss_pred cCCCCCcccccccCCCCCCCEEeecCccCCCcCcccCCCCCCCEEeccCCcCCcccccCccCCCCCCEEEecCCCCCccc
Q 007237 145 SGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENV 224 (611)
Q Consensus 145 ~~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~l~~~l~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~c~~l~~~ 224 (611)
++|.... + ..+..+++|++|++++|.++.+ ..+..+++|+.|++++|...+..+ +..+++|+.|++++|.. ..+
T Consensus 120 ~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i-~~l 193 (291)
T 1h6t_A 120 EHNGISD-I-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI-SDL 193 (291)
T ss_dssp TTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC-CBC
T ss_pred CCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcC-CCC
Confidence 6654332 2 3455666677777777666665 445666666666666665443332 55666666666666533 233
Q ss_pred CcccCCCCCccEEeccCCCcccC
Q 007237 225 PDTLGQVESLEELDISETAVRRP 247 (611)
Q Consensus 225 p~~l~~l~~L~~L~l~~~~~~~~ 247 (611)
+ .+..+++|+.|++++|.+...
T Consensus 194 ~-~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 194 R-ALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp G-GGTTCTTCSEEEEEEEEEECC
T ss_pred h-hhccCCCCCEEECcCCcccCC
Confidence 3 256666666666666665543
No 99
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.64 E-value=2.1e-15 Score=143.20 Aligned_cols=159 Identities=21% Similarity=0.223 Sum_probs=87.5
Q ss_pred CCccEEEecCCcCcCcCCcccCCCCCCcEEEcCCCCccccCcc-ccCCCCCcEEeccCCCCCCCCcc-cCCCCCCCCEEE
Q 007237 66 ESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLS-IEHLFGLVQLTLNDCKNLSSLPV-AISSFQCLRNLK 143 (611)
Q Consensus 66 ~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~L~~~~i~~lp~~-~~~l~~L~~L~L~~c~~l~~lp~-~l~~l~~L~~L~ 143 (611)
++|++|++++|.+.+..+..++.+++|++|+++++.++.+|.. +..+++|++|++++|. +..+|. .+..+++|++|+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ-LQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc-CCccCHhHhcCccCCCEEE
Confidence 3556666666655544444555666666666666666655543 3556666666666543 333333 245566666666
Q ss_pred ecCCCCCcccccccCCCCCCCEEeecCccCCCcCcc-cCCCCCCCEEeccCCcCCcccccCccCCCCCCEEEecCCCCCc
Q 007237 144 LSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSS-IELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLE 222 (611)
Q Consensus 144 L~~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~l~~~-l~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~c~~l~ 222 (611)
+++|......+..+..+++|++|++++|.++.++.. +..+++|+.|++++|... +.+++|+.|+++++...+
T Consensus 107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~L~~~~n~~~g 179 (208)
T 2o6s_A 107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSG 179 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-------CCTTTTHHHHHHHHHCTT
T ss_pred cCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee-------cCCCCHHHHHHHHHhCCc
Confidence 666544333333455566666666666666655543 455666666666665332 234455555555555555
Q ss_pred ccCcccCCCC
Q 007237 223 NVPDTLGQVE 232 (611)
Q Consensus 223 ~~p~~l~~l~ 232 (611)
.+|..++.++
T Consensus 180 ~ip~~~~~l~ 189 (208)
T 2o6s_A 180 VVRNSAGSVA 189 (208)
T ss_dssp TBBCTTSSBC
T ss_pred eeeccCcccc
Confidence 5555554443
No 100
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.64 E-value=8.3e-15 Score=159.35 Aligned_cols=188 Identities=19% Similarity=0.244 Sum_probs=131.4
Q ss_pred CCcEEeccCCCCCCCCcccCCCCCCCCEEEecCCCCCcccccccCCCCCCCEEeecCccCCCcCcccCCCCCCCEEeccC
Q 007237 114 GLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLND 193 (611)
Q Consensus 114 ~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~l~~~l~~l~~L~~L~L~~ 193 (611)
+|+.|++++|. ++.+|..+ +++|+.|++++|.. ..+| ..+++|++|++++|.++.+|. +.. +|+.|++++
T Consensus 60 ~L~~L~Ls~n~-L~~lp~~l--~~~L~~L~Ls~N~l-~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLN-LSSLPDNL--PPQITVLEITQNAL-ISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSC-CSCCCSCC--CTTCSEEECCSSCC-SCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCS
T ss_pred CccEEEeCCCC-CCccCHhH--cCCCCEEECcCCCC-cccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCC
Confidence 78889998864 66688766 47889999988754 4666 457888888888888888887 554 888888888
Q ss_pred CcCCcccccCccCCCCCCEEEecCCCCCcccCcccCCCCCccEEeccCCCcccCCccccccCCCcEEEcCCCCCCCCCCc
Q 007237 194 CKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSAS 273 (611)
Q Consensus 194 ~~~~~~lp~~i~~l~~L~~L~l~~c~~l~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~ 273 (611)
|...+ +|. .+++|+.|++++|... .+|. .+++|+.|++++|.+..+|. +. ++|+.|++++|....
T Consensus 130 N~l~~-lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~---- 194 (571)
T 3cvr_A 130 NQLTM-LPE---LPALLEYINADNNQLT-MLPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLES---- 194 (571)
T ss_dssp SCCSC-CCC---CCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSS----
T ss_pred CcCCC-CCC---cCccccEEeCCCCccC-cCCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCc----
Confidence 77655 665 5778888888887644 3665 46788888888888887777 43 778888887775221
Q ss_pred ccccccccccCCccchhhccCCCCC-----CCCCCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCC-cCCccccc
Q 007237 274 WHLHLPFNLMGKSSCLVALMLPSLS-----GLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFV-TLPASINS 347 (611)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~l~~l~-----~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~-~lp~~i~~ 347 (611)
+|.+. ..+.|+.|++++|.+. .+|..+..+++|+.|+|++|.++ .+|..+..
T Consensus 195 --------------------lp~~~~~L~~~~~~L~~L~Ls~N~l~--~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 195 --------------------LPAVPVRNHHSEETEIFFRCRENRIT--HIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp --------------------CCCCC--------CCEEEECCSSCCC--CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred --------------------hhhHHHhhhcccccceEEecCCCcce--ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 11111 1122377777777775 37776767777777777777776 55555554
Q ss_pred C
Q 007237 348 L 348 (611)
Q Consensus 348 l 348 (611)
+
T Consensus 253 l 253 (571)
T 3cvr_A 253 Q 253 (571)
T ss_dssp H
T ss_pred h
Confidence 4
No 101
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.62 E-value=4.3e-15 Score=148.85 Aligned_cols=170 Identities=24% Similarity=0.346 Sum_probs=146.9
Q ss_pred cCCCCCCcEEEcCCCCccccCccccCCCCCcEEeccCCCCCCCCcccCCCCCCCCEEEecCCCCCcccccccCCCCCCCE
Q 007237 86 VGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSE 165 (611)
Q Consensus 86 l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~~~~l~~L~~ 165 (611)
+..+++|++|+++++.+..++ .+..+++|++|++++|. +..++. +.++++|+.|++++|.. ..++ .+..+++|++
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~-l~~~~~-l~~l~~L~~L~l~~n~l-~~~~-~l~~l~~L~~ 116 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNK-LTDIKP-LANLKNLGWLFLDENKV-KDLS-SLKDLKKLKS 116 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSCC-CCGG-GGTTCTTCCE
T ss_pred hhhcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCc-cCCCcc-cccCCCCCEEECCCCcC-CCCh-hhccCCCCCE
Confidence 356889999999999999997 48899999999999965 666776 88899999999999864 4444 4889999999
Q ss_pred EeecCccCCCcCcccCCCCCCCEEeccCCcCCcccccCccCCCCCCEEEecCCCCCcccCcccCCCCCccEEeccCCCcc
Q 007237 166 LNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVR 245 (611)
Q Consensus 166 L~L~~~~i~~l~~~l~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~c~~l~~~p~~l~~l~~L~~L~l~~~~~~ 245 (611)
|++++|.++.+ +.+..+++|+.|++++|..... ..+..+++|+.|++++|......+ +..+++|+.|++++|.+.
T Consensus 117 L~L~~n~i~~~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~ 191 (291)
T 1h6t_A 117 LSLEHNGISDI-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 191 (291)
T ss_dssp EECTTSCCCCC-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred EECCCCcCCCC-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCC
Confidence 99999999987 4688899999999999976654 568899999999999986654433 889999999999999999
Q ss_pred cCCccccccCCCcEEEcCCCC
Q 007237 246 RPPSSVFLMKNLRTLSFSGCN 266 (611)
Q Consensus 246 ~~~~~~~~l~~L~~L~l~~c~ 266 (611)
.++. +..+++|+.|++++|.
T Consensus 192 ~l~~-l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 192 DLRA-LAGLKNLDVLELFSQE 211 (291)
T ss_dssp BCGG-GTTCTTCSEEEEEEEE
T ss_pred CChh-hccCCCCCEEECcCCc
Confidence 8865 8889999999999986
No 102
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.62 E-value=2.2e-15 Score=165.58 Aligned_cols=172 Identities=21% Similarity=0.318 Sum_probs=93.1
Q ss_pred CCCCCcccccccccccccccccCccccccCccccCCCccEEEecCCcCcCcCCcccCCCCCCcEEEcCCCCccccCcccc
Q 007237 31 DFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIE 110 (611)
Q Consensus 31 ~~~~~~~L~~L~L~~c~~l~~i~~s~~~l~~L~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~L~~~~i~~lp~~~~ 110 (611)
.+..+++|+.|++++| .+..++ .+..+++|++|+|++|.+.+..| +..+++|++|+|++|.+..+| .+.
T Consensus 38 ~~~~L~~L~~L~l~~n-~i~~l~-------~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-~l~ 106 (605)
T 1m9s_A 38 TQNELNSIDQIIANNS-DIKSVQ-------GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLS-SLK 106 (605)
T ss_dssp CHHHHTTCCCCBCTTC-CCCCCT-------TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCT-TST
T ss_pred chhcCCCCCEEECcCC-CCCCCh-------HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCCh-hhc
Confidence 3445556666666554 333332 12335556666666655444332 555666666666666665554 455
Q ss_pred CCCCCcEEeccCCCCCCCCcccCCCCCCCCEEEecCCCCCcccccccCCCCCCCEEeecCccCCCcCcccCCCCCCCEEe
Q 007237 111 HLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLN 190 (611)
Q Consensus 111 ~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~l~~~l~~l~~L~~L~ 190 (611)
.+++|+.|+|++|. +..++. +..+++|+.|+|++|.... + ..+..+++|+.|+|++|.+..+++ +..+++|+.|+
T Consensus 107 ~l~~L~~L~Ls~N~-l~~l~~-l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~ 181 (605)
T 1m9s_A 107 DLKKLKSLSLEHNG-ISDING-LVHLPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLY 181 (605)
T ss_dssp TCTTCCEEECTTSC-CCCCGG-GGGCTTCSEEECCSSCCCC-C-GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEE
T ss_pred cCCCCCEEEecCCC-CCCCcc-ccCCCccCEEECCCCccCC-c-hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEE
Confidence 56666666666543 334432 5556666666666654332 2 345556666666666666665544 55666666666
Q ss_pred ccCCcCCcccccCccCCCCCCEEEecCCCC
Q 007237 191 LNDCKNFARVPSSINGLKSLKTLNLSGCCK 220 (611)
Q Consensus 191 L~~~~~~~~lp~~i~~l~~L~~L~l~~c~~ 220 (611)
|++|.... ++ .+..+++|+.|++++|..
T Consensus 182 Ls~N~i~~-l~-~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 182 LSKNHISD-LR-ALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp CCSSCCCB-CG-GGTTCTTCSEEECCSEEE
T ss_pred CcCCCCCC-Ch-HHccCCCCCEEEccCCcC
Confidence 66654433 22 355566666666665543
No 103
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.62 E-value=1.9e-15 Score=166.12 Aligned_cols=173 Identities=21% Similarity=0.319 Sum_probs=122.7
Q ss_pred cCCCccEEEecCCcCcCcCCcccCCCCCCcEEEcCCCCccccCccccCCCCCcEEeccCCCCCCCCcccCCCCCCCCEEE
Q 007237 64 FVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLK 143 (611)
Q Consensus 64 ~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~ 143 (611)
.+++|+.|++++|.+.. ++ .+..+++|+.|+|++|.+..++. +..+++|+.|+|++|. +..+| .+..+++|+.|+
T Consensus 41 ~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENK-IKDLS-SLKDLKKLKSLS 115 (605)
T ss_dssp HHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSC-CCCCT-TSTTCTTCCEEE
T ss_pred cCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCC-CCCCh-hhccCCCCCEEE
Confidence 36677777887776543 33 46777888888888888777766 7777888888887754 55555 477778888888
Q ss_pred ecCCCCCcccccccCCCCCCCEEeecCccCCCcCcccCCCCCCCEEeccCCcCCcccccCccCCCCCCEEEecCCCCCcc
Q 007237 144 LSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLEN 223 (611)
Q Consensus 144 L~~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~l~~~l~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~c~~l~~ 223 (611)
|++|.... + ..+..+++|+.|+|++|.++.+ ..+..+++|+.|+|++|...+..| +..+++|+.|+|++|... .
T Consensus 116 Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~-~ 189 (605)
T 1m9s_A 116 LEHNGISD-I-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS-D 189 (605)
T ss_dssp CTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-B
T ss_pred ecCCCCCC-C-ccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCC-C
Confidence 88765443 3 3466777888888888877776 557777888888888776655444 777788888888877543 3
Q ss_pred cCcccCCCCCccEEeccCCCcccCC
Q 007237 224 VPDTLGQVESLEELDISETAVRRPP 248 (611)
Q Consensus 224 ~p~~l~~l~~L~~L~l~~~~~~~~~ 248 (611)
++ .+..+++|+.|++++|.+...|
T Consensus 190 l~-~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 190 LR-ALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp CG-GGTTCTTCSEEECCSEEEECCC
T ss_pred Ch-HHccCCCCCEEEccCCcCcCCc
Confidence 43 4777788888888887776554
No 104
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.61 E-value=2.6e-15 Score=141.26 Aligned_cols=151 Identities=18% Similarity=0.269 Sum_probs=79.5
Q ss_pred CCCCCCcEEEcCCCCccccCccccCCCCCcEEeccCCCCCCCCcccCCCCCCCCEEEecCCCCCcccccccCCCCCCCEE
Q 007237 87 GSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSEL 166 (611)
Q Consensus 87 ~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~~~~l~~L~~L 166 (611)
+.+++|++|+++++.++.+| .+..+++|++|++++| .+..++ .+..+++|++|++++|......+..+..+++|++|
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 44556666666666666666 5666666666666665 344444 35556666666666655444455555555666666
Q ss_pred eecCccCCC-cCcccCCCCCCCEEeccCCcCCcccccCccCCCCCCEEEecCCCCCcccCcccCCCCCccEEeccCCC
Q 007237 167 NLDGTSITE-VPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETA 243 (611)
Q Consensus 167 ~L~~~~i~~-l~~~l~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~c~~l~~~p~~l~~l~~L~~L~l~~~~ 243 (611)
++++|.++. .+..+..+++|++|++++|...+.+| .+..+++|+.|++++|... .++ .+..+++|+.|++++|.
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~-~~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVH-DYR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCC-CCT-TGGGCSSCCEEEECBC-
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCc-ChH-HhccCCCCCEEEeeCcc
Confidence 666555553 34445555555555555554333333 3444444444444444322 122 33344444444444443
No 105
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.61 E-value=1.3e-14 Score=137.63 Aligned_cols=107 Identities=18% Similarity=0.275 Sum_probs=46.7
Q ss_pred CCCCCCEEeecCccCCCcCcc-cCCCCCCCEEeccCCcCCcccccCccCCCCCCEEEecCCCCCcccCcccCCCCCccEE
Q 007237 159 TMEDLSELNLDGTSITEVPSS-IELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEEL 237 (611)
Q Consensus 159 ~l~~L~~L~L~~~~i~~l~~~-l~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~c~~l~~~p~~l~~l~~L~~L 237 (611)
.+++|++|++++|.++.++.. +..+++|++|++++|...+..+..+..+++|++|++++|......+..++.+++|+.|
T Consensus 50 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 129 (208)
T 2o6s_A 50 ELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDL 129 (208)
T ss_dssp TCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEE
Confidence 333333333333333333322 2334444444444443332222233444555555555543333233334555566666
Q ss_pred eccCCCcccCCcc-ccccCCCcEEEcCCC
Q 007237 238 DISETAVRRPPSS-VFLMKNLRTLSFSGC 265 (611)
Q Consensus 238 ~l~~~~~~~~~~~-~~~l~~L~~L~l~~c 265 (611)
++++|.+..++.. +..+++|++|++++|
T Consensus 130 ~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 130 RLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred ECCCCccceeCHHHhccCCCccEEEecCC
Confidence 6666555544432 333444444444444
No 106
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.60 E-value=4.3e-15 Score=139.76 Aligned_cols=153 Identities=17% Similarity=0.270 Sum_probs=134.1
Q ss_pred cccCCCCCcEEeccCCCCCCCCcccCCCCCCCCEEEecCCCCCcccccccCCCCCCCEEeecCccCCC-cCcccCCCCCC
Q 007237 108 SIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITE-VPSSIELLPGL 186 (611)
Q Consensus 108 ~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~-l~~~l~~l~~L 186 (611)
....+++|++|++++|. +..+| .+..+++|++|++++| .+..+ ..+..+++|++|++++|.++. .+..++.+++|
T Consensus 39 ~~~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~l~~n-~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 114 (197)
T 4ezg_A 39 TEAQMNSLTYITLANIN-VTDLT-GIEYAHNIKDLTINNI-HATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSL 114 (197)
T ss_dssp BHHHHHTCCEEEEESSC-CSCCT-TGGGCTTCSEEEEESC-CCSCC-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTC
T ss_pred ChhhcCCccEEeccCCC-ccChH-HHhcCCCCCEEEccCC-CCCcc-hhhhcCCCCCEEEeECCccCcccChhhcCCCCC
Confidence 34678899999999964 66888 5888999999999998 44444 478889999999999999985 67789999999
Q ss_pred CEEeccCCcCCcccccCccCCCCCCEEEecCCCCCcccCcccCCCCCccEEeccCCCcccCCccccccCCCcEEEcCCCC
Q 007237 187 ELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCN 266 (611)
Q Consensus 187 ~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~c~~l~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~c~ 266 (611)
++|++++|......+..+..+++|++|++++|..+..+| .+..+++|+.|++++|.+..++ .+..+++|+.|++++|+
T Consensus 115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC-
T ss_pred CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcc
Confidence 999999999888788889999999999999998677776 6889999999999999999887 78889999999999987
No 107
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.57 E-value=3.5e-14 Score=135.94 Aligned_cols=150 Identities=23% Similarity=0.313 Sum_probs=93.6
Q ss_pred cEEEcCCCCccccCccccCCCCCcEEeccCCCCCCCCcc-cCCCCCCCCEEEecCCCCCcccccccCCCCCCCEEeecCc
Q 007237 93 QELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPV-AISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGT 171 (611)
Q Consensus 93 ~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~c~~l~~lp~-~l~~l~~L~~L~L~~~~~l~~~p~~~~~l~~L~~L~L~~~ 171 (611)
+.++.++++++++|..+. ++|++|++++|. ++.++. .+..+++|+.|+|++|......|..+..+++|++|++++|
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~-i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNT-IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSC-CCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCc-CCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 345555566666665443 456666666643 333332 4566667777777776555555666677777777777777
Q ss_pred cCCCcCcc-cCCCCCCCEEeccCCcCCcccccCccCCCCCCEEEecCCCCCcccCcccCCCCCccEEeccCCCcc
Q 007237 172 SITEVPSS-IELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVR 245 (611)
Q Consensus 172 ~i~~l~~~-l~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~c~~l~~~p~~l~~l~~L~~L~l~~~~~~ 245 (611)
.++.+|.. +..+++|+.|++++|...+..|..+..+++|+.|++++|......+..+..+++|+.|++++|.+.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 77766654 466677777777776666555666666667777777666554444445666666666666666554
No 108
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.56 E-value=8e-17 Score=176.01 Aligned_cols=204 Identities=15% Similarity=0.116 Sum_probs=118.1
Q ss_pred CCCCcccccccccccccccccCccccccCccccCCCccEEEecCCc-------------CcCcCCcccCCCCCCcEEE-c
Q 007237 32 FTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCL-------------KLRKFPHVVGSMECLQELL-L 97 (611)
Q Consensus 32 ~~~~~~L~~L~L~~c~~l~~i~~s~~~l~~L~~l~~L~~L~Ls~~~-------------~~~~lp~~l~~l~~L~~L~-L 97 (611)
+..+++|+.|+|+++ .++.+|.+++. +++|++|++++|. ..+..|..++.+++|+.|+ +
T Consensus 345 ~~~~~~L~~L~Ls~n-~L~~Lp~~i~~------l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l 417 (567)
T 1dce_A 345 SATDEQLFRCELSVE-KSTVLQSELES------CKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM 417 (567)
T ss_dssp CSTTTTSSSCCCCHH-HHHHHHHHHHH------HHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGG
T ss_pred cccCccceeccCChh-hHHhhHHHHHH------HHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcch
Confidence 456777788888776 66777776666 4556666665543 2334445555555555555 3
Q ss_pred CCCCccccCccccCCCCCcEEeccCCCCCCCCcccCCCCCCCCEEEecCCCCCcccccccCCCCCCCEEeecCccCCCcC
Q 007237 98 DGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVP 177 (611)
Q Consensus 98 ~~~~i~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~l~ 177 (611)
+.+.+..++. +.+.++ .+..+|. ..|+.|++++|. +..+|. ++.+++|+.|++++|.++.+|
T Consensus 418 ~~n~~~~L~~----------l~l~~n-~i~~l~~-----~~L~~L~Ls~n~-l~~lp~-~~~l~~L~~L~Ls~N~l~~lp 479 (567)
T 1dce_A 418 RAAYLDDLRS----------KFLLEN-SVLKMEY-----ADVRVLHLAHKD-LTVLCH-LEQLLLVTHLDLSHNRLRALP 479 (567)
T ss_dssp GHHHHHHHHH----------HHHHHH-HHHHHHH-----TTCSEEECTTSC-CSSCCC-GGGGTTCCEEECCSSCCCCCC
T ss_pred hhcccchhhh----------hhhhcc-cccccCc-----cCceEEEecCCC-CCCCcC-ccccccCcEeecCcccccccc
Confidence 4333322221 111110 1111121 235666666653 333554 566666666666666666666
Q ss_pred cccCCCCCCCEEeccCCcCCcccccCccCCCCCCEEEecCCCCCccc-CcccCCCCCccEEeccCCCcccCCcccc----
Q 007237 178 SSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENV-PDTLGQVESLEELDISETAVRRPPSSVF---- 252 (611)
Q Consensus 178 ~~l~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~c~~l~~~-p~~l~~l~~L~~L~l~~~~~~~~~~~~~---- 252 (611)
..++.+++|+.|++++|...+ +| .++.+++|++|++++|...+.. |..++.+++|+.|++++|.+...|+...
T Consensus 480 ~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~ 557 (567)
T 1dce_A 480 PALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAE 557 (567)
T ss_dssp GGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHH
T ss_pred hhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHH
Confidence 666666666666666665443 45 5666677777777766554443 6677777777777777777776655432
Q ss_pred ccCCCcEEEc
Q 007237 253 LMKNLRTLSF 262 (611)
Q Consensus 253 ~l~~L~~L~l 262 (611)
.+++|+.|++
T Consensus 558 ~lp~L~~L~l 567 (567)
T 1dce_A 558 MLPSVSSILT 567 (567)
T ss_dssp HCTTCSEEEC
T ss_pred HCcccCccCC
Confidence 3677777753
No 109
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.56 E-value=7.7e-14 Score=133.56 Aligned_cols=149 Identities=22% Similarity=0.326 Sum_probs=87.0
Q ss_pred CEEeecCccCCCcCcccCCCCCCCEEeccCCcCCcccccCccCCCCCCEEEecCCCCCcccCcccCCCCCccEEeccCCC
Q 007237 164 SELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETA 243 (611)
Q Consensus 164 ~~L~L~~~~i~~l~~~l~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~c~~l~~~p~~l~~l~~L~~L~l~~~~ 243 (611)
+.+++.++.++++|..+. ++|+.|++++|......+..+..+++|+.|++++|......|..+..+++|+.|++++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 345666666666665543 567777777766555444566667777777777766555556667777777777777776
Q ss_pred cccCCccccccCCCcEEEcCCCCCCCCCCcccccccccccCCccchhhccCCCCCCCCCCCEEeccCCCCCCCCCCCCCC
Q 007237 244 VRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIG 323 (611)
Q Consensus 244 ~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~~~~l~ 323 (611)
+..+|... +.++++|+.|++++|.+. +..+..+.
T Consensus 92 l~~l~~~~---------------------------------------------f~~l~~L~~L~L~~N~l~-~~~~~~~~ 125 (220)
T 2v9t_B 92 ITELPKSL---------------------------------------------FEGLFSLQLLLLNANKIN-CLRVDAFQ 125 (220)
T ss_dssp CCCCCTTT---------------------------------------------TTTCTTCCEEECCSSCCC-CCCTTTTT
T ss_pred CCccCHhH---------------------------------------------ccCCCCCCEEECCCCCCC-EeCHHHcC
Confidence 66655432 233444455555555443 23344555
Q ss_pred CCCCCCEEEcCCCCCCcCCc-ccccCCCcCeeeccccc
Q 007237 324 NLHSLNELYLSKNNFVTLPA-SINSLLNLKELEMEDCK 360 (611)
Q Consensus 324 ~l~~L~~L~L~~n~l~~lp~-~i~~l~~L~~L~L~~c~ 360 (611)
.+++|+.|+|++|+++.++. .+..+++|+.|++++++
T Consensus 126 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 126 DLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 55556666666655555543 24555555555555554
No 110
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.54 E-value=1.8e-14 Score=148.94 Aligned_cols=147 Identities=24% Similarity=0.217 Sum_probs=85.9
Q ss_pred ccccccccccccccCccccccCccccCCCccEEEecCCcCcCcCCcccC-CCCCCcEEEcCCCCccccCc-cccCCCCCc
Q 007237 39 EELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVG-SMECLQELLLDGTDIKELPL-SIEHLFGLV 116 (611)
Q Consensus 39 ~~L~L~~c~~l~~i~~s~~~l~~L~~l~~L~~L~Ls~~~~~~~lp~~l~-~l~~L~~L~L~~~~i~~lp~-~~~~l~~L~ 116 (611)
+.++++++ .++.+|..+ .+.++.|+|++|.+.+..+..+. .+++|++|++++|.+..++. .+..+++|+
T Consensus 21 ~~l~c~~~-~l~~iP~~~--------~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~ 91 (361)
T 2xot_A 21 NILSCSKQ-QLPNVPQSL--------PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLR 91 (361)
T ss_dssp TEEECCSS-CCSSCCSSC--------CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred CEEEeCCC-CcCccCccC--------CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCC
Confidence 45555553 555565432 23466677777766655555555 67777777777777776653 466666677
Q ss_pred EEeccCCCCCCCCcc-cCCCCCCCCEEEecCCCCCcccccccCCCCCCCEEeecCccCCCcCccc----CCCCCCCEEec
Q 007237 117 QLTLNDCKNLSSLPV-AISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSI----ELLPGLELLNL 191 (611)
Q Consensus 117 ~L~L~~c~~l~~lp~-~l~~l~~L~~L~L~~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~l~~~l----~~l~~L~~L~L 191 (611)
+|++++|. +..++. .+..+++|+.|+|++|......+..+..+++|++|+|++|.++.+|..+ ..+++|+.|+|
T Consensus 92 ~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L 170 (361)
T 2xot_A 92 YLDLSSNH-LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDL 170 (361)
T ss_dssp EEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEEC
T ss_pred EEECCCCc-CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEEC
Confidence 77776654 344433 3556666666666666555555556666666666666666666655543 33445555555
Q ss_pred cCCc
Q 007237 192 NDCK 195 (611)
Q Consensus 192 ~~~~ 195 (611)
++|.
T Consensus 171 ~~N~ 174 (361)
T 2xot_A 171 SSNK 174 (361)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 4443
No 111
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.54 E-value=9e-14 Score=133.11 Aligned_cols=111 Identities=18% Similarity=0.194 Sum_probs=51.5
Q ss_pred CCCCCCEEEecCCCCCcccccccCCCCCCCEEeecCccCCCcCcc-cCCCCCCCEEeccCCcCCcccccCccCCCCCCEE
Q 007237 135 SFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSS-IELLPGLELLNLNDCKNFARVPSSINGLKSLKTL 213 (611)
Q Consensus 135 ~l~~L~~L~L~~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~l~~~-l~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L 213 (611)
.+++|+.|++++|......+..+..+++|++|++++|.++.++.. +..+++|++|++++|...+..|..+..+++|++|
T Consensus 55 ~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 134 (220)
T 2v70_A 55 KLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLL 134 (220)
T ss_dssp GCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEE
T ss_pred cCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEE
Confidence 344444444444333322233444444444444444444444332 4444555555555544444444444455555555
Q ss_pred EecCCCCCcccCcccCCCCCccEEeccCCCcc
Q 007237 214 NLSGCCKLENVPDTLGQVESLEELDISETAVR 245 (611)
Q Consensus 214 ~l~~c~~l~~~p~~l~~l~~L~~L~l~~~~~~ 245 (611)
++++|......|..+..+++|+.|++++|.+.
T Consensus 135 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 135 SLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp ECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred ECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 55554444433444555555555555555443
No 112
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.54 E-value=1.5e-13 Score=132.43 Aligned_cols=86 Identities=21% Similarity=0.217 Sum_probs=34.4
Q ss_pred CCCCCCCEEeecCccCCCcCcc-cCCCCCCCEEeccCCcCCcccccCccCCCCCCEEEecCCCCCcccCcccCCCCCccE
Q 007237 158 TTMEDLSELNLDGTSITEVPSS-IELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEE 236 (611)
Q Consensus 158 ~~l~~L~~L~L~~~~i~~l~~~-l~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~c~~l~~~p~~l~~l~~L~~ 236 (611)
..+++|++|++++|.++.++.. +..+++|+.|++++|... .+|..+..+++|++|++++|......+..+..+++|+.
T Consensus 85 ~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 163 (229)
T 3e6j_A 85 DSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTH 163 (229)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCE
Confidence 3444444444444444433332 233444444444443322 33333444444444444443322222223444444444
Q ss_pred EeccCCCc
Q 007237 237 LDISETAV 244 (611)
Q Consensus 237 L~l~~~~~ 244 (611)
|++++|.+
T Consensus 164 L~l~~N~~ 171 (229)
T 3e6j_A 164 AYLFGNPW 171 (229)
T ss_dssp EECTTSCB
T ss_pred EEeeCCCc
Confidence 44444443
No 113
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.54 E-value=1.5e-13 Score=132.40 Aligned_cols=148 Identities=21% Similarity=0.270 Sum_probs=86.0
Q ss_pred CEEeecCccCCCcCcccCCCCCCCEEeccCCcCCcccccCccCCCCCCEEEecCCCCCcccCcccCCCCCccEEeccCCC
Q 007237 164 SELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETA 243 (611)
Q Consensus 164 ~~L~L~~~~i~~l~~~l~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~c~~l~~~p~~l~~l~~L~~L~l~~~~ 243 (611)
+.++.+++.++.+|..+. ++|++|++++|...+..|..+..+++|++|++++|......+..+..+++|+.|++++|.
T Consensus 22 ~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence 345555555555555432 556666666665555545555555556666555554322222334555555555555555
Q ss_pred cccCCccccccCCCcEEEcCCCCCCCCCCcccccccccccCCccchhhccCCCCCCCCCCCEEeccCCCCCCCCCCCCCC
Q 007237 244 VRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIG 323 (611)
Q Consensus 244 ~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~~~~l~ 323 (611)
+..++.. .+..+++|+.|++++|++. .+|..+.
T Consensus 100 l~~l~~~---------------------------------------------~~~~l~~L~~L~Ls~N~l~--~lp~~~~ 132 (229)
T 3e6j_A 100 LTVLPSA---------------------------------------------VFDRLVHLKELFMCCNKLT--ELPRGIE 132 (229)
T ss_dssp CCCCCTT---------------------------------------------TTTTCTTCCEEECCSSCCC--SCCTTGG
T ss_pred CCccChh---------------------------------------------HhCcchhhCeEeccCCccc--ccCcccc
Confidence 4443321 1345566666666666664 4666677
Q ss_pred CCCCCCEEEcCCCCCCcCCc-ccccCCCcCeeeccccc
Q 007237 324 NLHSLNELYLSKNNFVTLPA-SINSLLNLKELEMEDCK 360 (611)
Q Consensus 324 ~l~~L~~L~L~~n~l~~lp~-~i~~l~~L~~L~L~~c~ 360 (611)
.+++|+.|+|++|++..+|. .+..+++|+.|++.+++
T Consensus 133 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 133 RLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp GCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred cCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence 77777777777777776664 36667777777777665
No 114
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.53 E-value=2.1e-14 Score=141.53 Aligned_cols=171 Identities=20% Similarity=0.237 Sum_probs=80.4
Q ss_pred CCcccccccccccccccccCccccccCccccCCCccEEEecCCcCcCcCCcccCCCCCCcEEEcCCCCccccCccccCCC
Q 007237 34 EAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLF 113 (611)
Q Consensus 34 ~~~~L~~L~L~~c~~l~~i~~s~~~l~~L~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~ 113 (611)
.+.++..++++++ .++.++ . +..+++|++|++++|.+. .++ .+..+++|++|++++|.++.++. +..++
T Consensus 17 ~l~~l~~l~l~~~-~i~~~~-~------~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~ 85 (263)
T 1xeu_A 17 GLANAVKQNLGKQ-SVTDLV-S------QKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP-LKDLT 85 (263)
T ss_dssp HHHHHHHHHHTCS-CTTSEE-C------HHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCS
T ss_pred HHHHHHHHHhcCC-Cccccc-c------hhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh-hccCC
Confidence 3455555666554 333333 1 222455666666665433 233 44555555555555555555544 55555
Q ss_pred CCcEEeccCCCCCCCCcccCCCCCCCCEEEecCCCCCcccccccCCCCCCCEEeecCccCCCcCcccCCCCCCCEEeccC
Q 007237 114 GLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLND 193 (611)
Q Consensus 114 ~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~l~~~l~~l~~L~~L~L~~ 193 (611)
+|++|++++|. ++.+|. +.. ++|+. |++++|.++.++ .+..+++|+.|++++
T Consensus 86 ~L~~L~L~~N~-l~~l~~-~~~-~~L~~------------------------L~L~~N~l~~~~-~l~~l~~L~~L~Ls~ 137 (263)
T 1xeu_A 86 KLEELSVNRNR-LKNLNG-IPS-ACLSR------------------------LFLDNNELRDTD-SLIHLKNLEILSIRN 137 (263)
T ss_dssp SCCEEECCSSC-CSCCTT-CCC-SSCCE------------------------EECCSSCCSBSG-GGTTCTTCCEEECTT
T ss_pred CCCEEECCCCc-cCCcCc-ccc-CcccE------------------------EEccCCccCCCh-hhcCcccccEEECCC
Confidence 55555555532 333332 111 44444 444444444432 244444444555444
Q ss_pred CcCCcccccCccCCCCCCEEEecCCCCCcccCcccCCCCCccEEeccCCCcccC
Q 007237 194 CKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRP 247 (611)
Q Consensus 194 ~~~~~~lp~~i~~l~~L~~L~l~~c~~l~~~p~~l~~l~~L~~L~l~~~~~~~~ 247 (611)
|+..+ ++ .+..+++|+.|++++|..... ..+..+++|+.|++++|.+...
T Consensus 138 N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 138 NKLKS-IV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp SCCCB-CG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred CcCCC-Ch-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 44322 22 344445555555555433322 3445555666666666555544
No 115
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.53 E-value=1.8e-13 Score=131.03 Aligned_cols=128 Identities=23% Similarity=0.253 Sum_probs=74.2
Q ss_pred CcEEEcCCCCccccCc--cccCCCCCcEEeccCCCCCCCCc-ccCCCCCCCCEEEecCCCCCcccccccCCCCCCCEEee
Q 007237 92 LQELLLDGTDIKELPL--SIEHLFGLVQLTLNDCKNLSSLP-VAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNL 168 (611)
Q Consensus 92 L~~L~L~~~~i~~lp~--~~~~l~~L~~L~L~~c~~l~~lp-~~l~~l~~L~~L~L~~~~~l~~~p~~~~~l~~L~~L~L 168 (611)
+++|++++|.++.++. .+..+++|++|++++|. ++.++ ..+..+++|++|++++|......+..+..+++|++|++
T Consensus 34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 112 (220)
T 2v70_A 34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML 112 (220)
T ss_dssp CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEEC
T ss_pred CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc-CCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEEC
Confidence 4555555555555422 24555555555555543 33333 24555666666666665554444555666666666666
Q ss_pred cCccCCCc-CcccCCCCCCCEEeccCCcCCcccccCccCCCCCCEEEecCCCC
Q 007237 169 DGTSITEV-PSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCK 220 (611)
Q Consensus 169 ~~~~i~~l-~~~l~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~c~~ 220 (611)
++|.++.+ |..+..+++|+.|++++|...+..|..+..+++|++|++++|..
T Consensus 113 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 113 RSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp TTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred CCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence 66666655 34466666666666666666555566666667777777766654
No 116
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.52 E-value=1.6e-15 Score=165.71 Aligned_cols=194 Identities=21% Similarity=0.193 Sum_probs=138.4
Q ss_pred cCCCcccEEEccCCCCCCcCC-CCCCCccccccccccccc-------------ccccCccccccCccccCCCccEEE-ec
Q 007237 10 QHLNMLKVMKLSHSENLIKTP-DFTEAPNLEELYLEGCTK-------------LRKVHPSLLLHNKLIFVESLKILI-LS 74 (611)
Q Consensus 10 ~~l~~L~~L~Ls~~~~l~~~~-~~~~~~~L~~L~L~~c~~-------------l~~i~~s~~~l~~L~~l~~L~~L~-Ls 74 (611)
..+++|+.|+|++|+. ..+| .+..+++|+.|+++++.. .+..|..++. +++|+.|+ ++
T Consensus 346 ~~~~~L~~L~Ls~n~L-~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~------l~~L~~L~~l~ 418 (567)
T 1dce_A 346 ATDEQLFRCELSVEKS-TVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQY------FSTLKAVDPMR 418 (567)
T ss_dssp STTTTSSSCCCCHHHH-HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHH------HHHHHHHCGGG
T ss_pred ccCccceeccCChhhH-HhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHH------HHhcccCcchh
Confidence 4578999999999864 4555 588999999999977642 2222333333 44455555 33
Q ss_pred CCcCcCcCCc------ccCC--CCCCcEEEcCCCCccccCccccCCCCCcEEeccCCCCCCCCcccCCCCCCCCEEEecC
Q 007237 75 GCLKLRKFPH------VVGS--MECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSG 146 (611)
Q Consensus 75 ~~~~~~~lp~------~l~~--l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~ 146 (611)
.+... .++. .+.. ...|++|++++|.++.+|. ++.+++|+.|++++|. +..+|..++++++|+.|+|++
T Consensus 419 ~n~~~-~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~ 495 (567)
T 1dce_A 419 AAYLD-DLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNR-LRALPPALAALRCLEVLQASD 495 (567)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCS
T ss_pred hcccc-hhhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCccc-ccccchhhhcCCCCCEEECCC
Confidence 22110 0000 0000 1258889999999999887 8899999999999864 668888888899999999998
Q ss_pred CCCCcccccccCCCCCCCEEeecCccCCCc--CcccCCCCCCCEEeccCCcCCcccccC---ccCCCCCCEEEe
Q 007237 147 CSKLKKFPQIVTTMEDLSELNLDGTSITEV--PSSIELLPGLELLNLNDCKNFARVPSS---INGLKSLKTLNL 215 (611)
Q Consensus 147 ~~~l~~~p~~~~~l~~L~~L~L~~~~i~~l--~~~l~~l~~L~~L~L~~~~~~~~lp~~---i~~l~~L~~L~l 215 (611)
|... .+| .++.+++|++|++++|.++.+ |..++.+++|+.|++++|...+..|.. +..+++|+.|++
T Consensus 496 N~l~-~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 496 NALE-NVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SCCC-CCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCC-CCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 7544 467 788899999999999999987 788899999999999998765554321 234788888864
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.52 E-value=2.2e-14 Score=141.31 Aligned_cols=166 Identities=19% Similarity=0.279 Sum_probs=131.9
Q ss_pred CCCCcEEEcCCCCccccCccccCCCCCcEEeccCCCCCCCCcccCCCCCCCCEEEecCCCCCcccccccCCCCCCCEEee
Q 007237 89 MECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNL 168 (611)
Q Consensus 89 l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~~~~l~~L~~L~L 168 (611)
+.++..++++.+.+++++ .+..+++|++|++++| .++.+| .+..+++|+.|++++|.. ..++. +..+++|++|++
T Consensus 18 l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~L~~N~i-~~~~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNS-NIQSLA-GMQFFTNLKELHLSHNQI-SDLSP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTS-CCCCCT-TGGGCTTCCEEECCSSCC-CCCGG-GTTCSSCCEEEC
T ss_pred HHHHHHHHhcCCCccccc-chhhcCcCcEEECcCC-Ccccch-HHhhCCCCCEEECCCCcc-CCChh-hccCCCCCEEEC
Confidence 455666677777777776 5677788888888875 466676 477788888888888654 44444 788888999999
Q ss_pred cCccCCCcCcccCCCCCCCEEeccCCcCCcccccCccCCCCCCEEEecCCCCCcccCcccCCCCCccEEeccCCCcccCC
Q 007237 169 DGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPP 248 (611)
Q Consensus 169 ~~~~i~~l~~~l~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~c~~l~~~p~~l~~l~~L~~L~l~~~~~~~~~ 248 (611)
++|.++.++.... ++|+.|++++|...+ ++ .+..+++|+.|++++|... .++ .++.+++|+.|++++|.+..+
T Consensus 93 ~~N~l~~l~~~~~--~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~-~~~-~l~~l~~L~~L~L~~N~i~~~- 165 (263)
T 1xeu_A 93 NRNRLKNLNGIPS--ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLK-SIV-MLGFLSKLEVLDLHGNEITNT- 165 (263)
T ss_dssp CSSCCSCCTTCCC--SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCC-BCG-GGGGCTTCCEEECTTSCCCBC-
T ss_pred CCCccCCcCcccc--CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCC-CCh-HHccCCCCCEEECCCCcCcch-
Confidence 9999988776444 999999999997655 44 5889999999999998754 444 688999999999999999988
Q ss_pred ccccccCCCcEEEcCCCC
Q 007237 249 SSVFLMKNLRTLSFSGCN 266 (611)
Q Consensus 249 ~~~~~l~~L~~L~l~~c~ 266 (611)
..+..+++|+.|++++|.
T Consensus 166 ~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 166 GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp TTSTTCCCCCEEEEEEEE
T ss_pred HHhccCCCCCEEeCCCCc
Confidence 678889999999999976
No 118
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.51 E-value=1.3e-13 Score=142.49 Aligned_cols=169 Identities=18% Similarity=0.176 Sum_probs=97.4
Q ss_pred EEEcCCCCccccCccccCCCCCcEEeccCCCCCCCCccc-CC-CCCCCCEEEecCCCCCcccccccCCCCCCCEEeecCc
Q 007237 94 ELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVA-IS-SFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGT 171 (611)
Q Consensus 94 ~L~L~~~~i~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~-l~-~l~~L~~L~L~~~~~l~~~p~~~~~l~~L~~L~L~~~ 171 (611)
.+++++++++.+|..+. ..++.|++++|. +..++.. +. .+++|+.|+|++|......+..+..+++|++|+|++|
T Consensus 22 ~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~-l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 22 ILSCSKQQLPNVPQSLP--SYTALLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp EEECCSSCCSSCCSSCC--TTCSEEECCSSC-CCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCCCcCccCccCC--CCCCEEECCCCC-CCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 34444444444444332 234555555532 3333322 33 4566666666655444444445666666666666666
Q ss_pred cCCCcCc-ccCCCCCCCEEeccCCcCCcccccCccCCCCCCEEEecCCCCCcccCcc-c---CCCCCccEEeccCCCccc
Q 007237 172 SITEVPS-SIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDT-L---GQVESLEELDISETAVRR 246 (611)
Q Consensus 172 ~i~~l~~-~l~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~c~~l~~~p~~-l---~~l~~L~~L~l~~~~~~~ 246 (611)
.++.++. .+..+++|+.|+|++|......|..+..+++|+.|++++|... .+|.. + ..+++|+.|++++|.+..
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC-eeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 6665554 3566667777777766665555666667777777777776443 34433 3 567888888888888887
Q ss_pred CCc-cccccCC--CcEEEcCCCC
Q 007237 247 PPS-SVFLMKN--LRTLSFSGCN 266 (611)
Q Consensus 247 ~~~-~~~~l~~--L~~L~l~~c~ 266 (611)
+|. .+..++. ++.|++.+|.
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSC
T ss_pred cCHHHhhhccHhhcceEEecCCC
Confidence 763 3445555 4778888775
No 119
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.46 E-value=1.9e-13 Score=124.83 Aligned_cols=129 Identities=22% Similarity=0.308 Sum_probs=74.9
Q ss_pred CCCccEEEecCCcCc-CcCCcccCCCCCCcEEEcCCCCccccCccccCCCCCcEEeccCCCCCCCCcccCCCCCCCCEEE
Q 007237 65 VESLKILILSGCLKL-RKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLK 143 (611)
Q Consensus 65 l~~L~~L~Ls~~~~~-~~lp~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~ 143 (611)
.++|++|++++|.+. +.+|..+..+++|++|++++|.++.+ ..+..+++|++|++++|.....+|..+.++++|++|+
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 356777777777665 56666666666777777766666665 5555666666666666543333554444456666666
Q ss_pred ecCCCCCcccc--cccCCCCCCCEEeecCccCCCcCc----ccCCCCCCCEEeccCCc
Q 007237 144 LSGCSKLKKFP--QIVTTMEDLSELNLDGTSITEVPS----SIELLPGLELLNLNDCK 195 (611)
Q Consensus 144 L~~~~~l~~~p--~~~~~l~~L~~L~L~~~~i~~l~~----~l~~l~~L~~L~L~~~~ 195 (611)
+++|.. ..++ ..+..+++|++|++++|.++.++. .+..+++|++|++++|.
T Consensus 102 Ls~N~l-~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 102 LSGNKL-KDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp CBSSSC-CSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred ccCCcc-CcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 665532 2222 455555566666666665555554 45555555555555543
No 120
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.46 E-value=1.5e-14 Score=162.91 Aligned_cols=196 Identities=18% Similarity=0.090 Sum_probs=103.9
Q ss_pred cccccccccccccccccCccccccCccccCCCccEEEecCCcCcCcCCcccCCCCCCcEEEcCCCCccccCccccCCCCC
Q 007237 36 PNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGL 115 (611)
Q Consensus 36 ~~L~~L~L~~c~~l~~i~~s~~~l~~L~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L 115 (611)
+.++.|+|.++ .+...+..+....+|.. .++..++++.+... ..+..+..+.+|+.|+|+++.+..+|..+..+++|
T Consensus 173 ~~~~~l~L~~n-~~~~~~~~~l~~l~Ls~-~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L 249 (727)
T 4b8c_D 173 PLTPKIELFAN-GKDEANQALLQHKKLSQ-YSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFL 249 (727)
T ss_dssp ----------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSC
T ss_pred CccceEEeeCC-CCCcchhhHhhcCccCc-ccccCcccccccee-cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCC
Confidence 45666666553 33333333322211111 12233333333222 45667778888888888888888888888888888
Q ss_pred cEEeccCCCCCCCCcccCCCCCCCCEEEecCCCCCcccccccCCCCCCCEEeecCccCCCcCcccCCCCCCCEEeccCCc
Q 007237 116 VQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCK 195 (611)
Q Consensus 116 ~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~l~~~l~~l~~L~~L~L~~~~ 195 (611)
++|+|++|. +..+|..++++++|++|+|++|... .+|..++.+++|++|+|++|.++.+|..++.+++|+.|+|++|.
T Consensus 250 ~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 250 TRLYLNGNS-LTELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp SCCBCTTSC-CSCCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSC
T ss_pred CEEEeeCCc-CcccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCc
Confidence 888888864 5578877888888888888887644 77888888888888888888888888888888888888888888
Q ss_pred CCcccccCccCCCC-CCEEEecCCCCCcccCcccCCCCCccEEeccCC
Q 007237 196 NFARVPSSINGLKS-LKTLNLSGCCKLENVPDTLGQVESLEELDISET 242 (611)
Q Consensus 196 ~~~~lp~~i~~l~~-L~~L~l~~c~~l~~~p~~l~~l~~L~~L~l~~~ 242 (611)
..+.+|..+..+.. +..|++++|.....+|. .|+.|+++.+
T Consensus 328 l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n 369 (727)
T 4b8c_D 328 LEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTD 369 (727)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C---------
T ss_pred cCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeecc
Confidence 77777765543321 12355666666555554 3445555544
No 121
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.43 E-value=3.5e-13 Score=123.05 Aligned_cols=129 Identities=21% Similarity=0.290 Sum_probs=90.5
Q ss_pred CCCCCcEEEcCCCCcc--ccCccccCCCCCcEEeccCCCCCCCCcccCCCCCCCCEEEecCCCCCcccccccCCCCCCCE
Q 007237 88 SMECLQELLLDGTDIK--ELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSE 165 (611)
Q Consensus 88 ~l~~L~~L~L~~~~i~--~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~~~~l~~L~~ 165 (611)
..++|++|+++++.+. .+|..+..+++|++|++++|. +..+ ..+..+++|++|++++|.....+|..+..+++|++
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 3477888999888888 888888888888888888866 5555 55777888888888887766657777777788888
Q ss_pred EeecCccCCCcC--cccCCCCCCCEEeccCCcCCcccc---cCccCCCCCCEEEecCC
Q 007237 166 LNLDGTSITEVP--SSIELLPGLELLNLNDCKNFARVP---SSINGLKSLKTLNLSGC 218 (611)
Q Consensus 166 L~L~~~~i~~l~--~~l~~l~~L~~L~L~~~~~~~~lp---~~i~~l~~L~~L~l~~c 218 (611)
|++++|.++.++ ..+..+++|+.|++++|...+..+ ..+..+++|+.|++++|
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC
Confidence 888888777765 456666677777776665433222 13444555555555544
No 122
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.43 E-value=2.3e-13 Score=121.63 Aligned_cols=127 Identities=23% Similarity=0.257 Sum_probs=79.4
Q ss_pred CCCccEEEecCCcCc-CcCCcccCCCCCCcEEEcCCCCccccCccccCCCCCcEEeccCCCCCCCCcccCCCCCCCCEEE
Q 007237 65 VESLKILILSGCLKL-RKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLK 143 (611)
Q Consensus 65 l~~L~~L~Ls~~~~~-~~lp~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~ 143 (611)
.++|++|++++|.+. +.+|..+..+++|++|++++|.++.+ ..++.+++|++|++++|.....+|..+..+++|++|+
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 356777777777766 56777777777777777777777766 5666666777777766554333555555566666666
Q ss_pred ecCCCCCcc-cccccCCCCCCCEEeecCccCCCcCc----ccCCCCCCCEEecc
Q 007237 144 LSGCSKLKK-FPQIVTTMEDLSELNLDGTSITEVPS----SIELLPGLELLNLN 192 (611)
Q Consensus 144 L~~~~~l~~-~p~~~~~l~~L~~L~L~~~~i~~l~~----~l~~l~~L~~L~L~ 192 (611)
+++|..... .+..+..+++|++|++++|.++.++. .+..+++|+.|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 666543331 22555666666666666666665554 35555555555554
No 123
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.38 E-value=1.3e-13 Score=155.27 Aligned_cols=116 Identities=21% Similarity=0.264 Sum_probs=66.1
Q ss_pred CCcccCCCCCCCCEEEecCCCCCcccccccCCCCCCCEEeecCccCCCcCcccCCCCCCCEEeccCCcCCcccccCccCC
Q 007237 128 SLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGL 207 (611)
Q Consensus 128 ~lp~~l~~l~~L~~L~L~~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~l~~~l~~l~~L~~L~L~~~~~~~~lp~~i~~l 207 (611)
..|..+..+++|+.|+|++|.. ..+|..+..+++|++|+|++|.++.+|..++.+++|++|+|++|... .+|..++.+
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l-~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l 292 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQI-FNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSC 292 (727)
T ss_dssp -------CCCCCCEEECTTSCC-SCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGG
T ss_pred cChhhhccCCCCcEEECCCCCC-CCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC-ccChhhcCC
Confidence 3344455566666666666543 35555555666666666666666666666666666666666666544 556666666
Q ss_pred CCCCEEEecCCCCCcccCcccCCCCCccEEeccCCCccc
Q 007237 208 KSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRR 246 (611)
Q Consensus 208 ~~L~~L~l~~c~~l~~~p~~l~~l~~L~~L~l~~~~~~~ 246 (611)
++|++|+|++|.. ..+|..++.+++|+.|++++|.+..
T Consensus 293 ~~L~~L~L~~N~l-~~lp~~~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 293 FQLKYFYFFDNMV-TTLPWEFGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp TTCSEEECCSSCC-CCCCSSTTSCTTCCCEECTTSCCCS
T ss_pred CCCCEEECCCCCC-CccChhhhcCCCccEEeCCCCccCC
Confidence 6666666666533 4556556666666666666666553
No 124
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.38 E-value=6.2e-13 Score=118.79 Aligned_cols=126 Identities=21% Similarity=0.276 Sum_probs=92.0
Q ss_pred CCCCcEEEcCCCCcc--ccCccccCCCCCcEEeccCCCCCCCCcccCCCCCCCCEEEecCCCCCcccccccCCCCCCCEE
Q 007237 89 MECLQELLLDGTDIK--ELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSEL 166 (611)
Q Consensus 89 l~~L~~L~L~~~~i~--~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~~~~l~~L~~L 166 (611)
.++|+.|+++++.+. .+|..+..+++|++|++++|. +..+ ..+..+++|++|++++|.....+|..+..+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-LTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC-CCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC-CCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 467888999988888 788888888888888888864 5555 557778888888888877666677777778888888
Q ss_pred eecCccCCCcC--cccCCCCCCCEEeccCCcCCcccc---cCccCCCCCCEEEec
Q 007237 167 NLDGTSITEVP--SSIELLPGLELLNLNDCKNFARVP---SSINGLKSLKTLNLS 216 (611)
Q Consensus 167 ~L~~~~i~~l~--~~l~~l~~L~~L~L~~~~~~~~lp---~~i~~l~~L~~L~l~ 216 (611)
++++|.++.++ ..+..+++|++|++++|...+..+ ..+..+++|+.|+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 88888887754 567777777777777775443332 245556666666554
No 125
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.36 E-value=5.3e-12 Score=117.96 Aligned_cols=124 Identities=27% Similarity=0.317 Sum_probs=55.7
Q ss_pred cEEEcCCCCccccCccccCCCCCcEEeccCCCCCCCCccc--CCCCCCCCEEEecCCCCCcccccccCCCCCCCEEeecC
Q 007237 93 QELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVA--ISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDG 170 (611)
Q Consensus 93 ~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~--l~~l~~L~~L~L~~~~~l~~~p~~~~~l~~L~~L~L~~ 170 (611)
+++++++++++++|..+.. +|++|++++|. ++.++.. +..+++|++|++++|...+..|..+..+++|++|++++
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNE-LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCC-CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCc-CCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 3444444444444443322 44445554432 3333321 34444555555554444333344444445555555555
Q ss_pred ccCCCcCcc-cCCCCCCCEEeccCCcCCcccccCccCCCCCCEEEecCCC
Q 007237 171 TSITEVPSS-IELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCC 219 (611)
Q Consensus 171 ~~i~~l~~~-l~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~c~ 219 (611)
|.++.++.. +..+++|++|++++|...+..|..+..+++|++|++++|.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 554443332 4444445555555444444444444444444444444443
No 126
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.34 E-value=8.9e-12 Score=116.42 Aligned_cols=128 Identities=23% Similarity=0.244 Sum_probs=86.4
Q ss_pred cEEEecCCcCcCcCCcccCCCCCCcEEEcCCCCccccCcc--ccCCCCCcEEeccCCCCCCCCcccCCCCCCCCEEEecC
Q 007237 69 KILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLS--IEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSG 146 (611)
Q Consensus 69 ~~L~Ls~~~~~~~lp~~l~~l~~L~~L~L~~~~i~~lp~~--~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~ 146 (611)
++++++++.+ +.+|..+.. +|++|+++++.++.++.. ++.+++|++|++++|......|..+..+++|++|++++
T Consensus 11 ~~l~~s~~~l-~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGL-KEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCC-SSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCc-CcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 4566666544 445554433 677777777777766653 67777777777777654444466677777777777777
Q ss_pred CCCCcccccccCCCCCCCEEeecCccCCCc-CcccCCCCCCCEEeccCCcCCcc
Q 007237 147 CSKLKKFPQIVTTMEDLSELNLDGTSITEV-PSSIELLPGLELLNLNDCKNFAR 199 (611)
Q Consensus 147 ~~~l~~~p~~~~~l~~L~~L~L~~~~i~~l-~~~l~~l~~L~~L~L~~~~~~~~ 199 (611)
|......+..+..+++|++|++++|.++.+ |..+..+++|++|++++|.....
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 766666666677777888888888877755 55677778888888887765543
No 127
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.30 E-value=2.2e-11 Score=113.87 Aligned_cols=32 Identities=25% Similarity=0.423 Sum_probs=14.5
Q ss_pred CCcEEEcCCCCccccCccccCCCCCcEEeccC
Q 007237 91 CLQELLLDGTDIKELPLSIEHLFGLVQLTLND 122 (611)
Q Consensus 91 ~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~ 122 (611)
+|++|++++|.++.+|..+..+++|++|++++
T Consensus 32 ~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~ 63 (193)
T 2wfh_A 32 DVTELYLDGNQFTLVPKELSNYKHLTLIDLSN 63 (193)
T ss_dssp TCCEEECCSSCCCSCCGGGGGCTTCCEEECCS
T ss_pred CCCEEECCCCcCchhHHHhhcccCCCEEECCC
Confidence 44444444444444444444444444444444
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.29 E-value=3e-11 Score=112.84 Aligned_cols=125 Identities=21% Similarity=0.247 Sum_probs=84.6
Q ss_pred cEEEcCCCCccccCccccCCCCCcEEeccCCCCCCCCcccCCCCCCCCEEEecCCCCCcccccccCCCCCCCEEeecCcc
Q 007237 93 QELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTS 172 (611)
Q Consensus 93 ~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~~~~l~~L~~L~L~~~~ 172 (611)
+++++++++++++|..+. .+|++|++++| .+..+|..+..+++|+.|++++|......+..+..+++|++|++++|.
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGN-QFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSS-CCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCC-cCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 456666666777765543 46777777774 355677667777777777777766555555667777777777777777
Q ss_pred CCCcCc-ccCCCCCCCEEeccCCcCCcccccCccCCCCCCEEEecCCCC
Q 007237 173 ITEVPS-SIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCK 220 (611)
Q Consensus 173 i~~l~~-~l~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~c~~ 220 (611)
++.++. .+..+++|+.|++++|......+..+..+++|+.|++++|..
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 776654 467777777777777765544444566777777777777654
No 129
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.28 E-value=1.9e-11 Score=124.50 Aligned_cols=242 Identities=14% Similarity=0.062 Sum_probs=138.6
Q ss_pred CCcccEEEccCCCCCCcCCCCCCCcccccccccccccccccCcccccc---CccccCCCccEEEecCCcCcCcCCcccCC
Q 007237 12 LNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLH---NKLIFVESLKILILSGCLKLRKFPHVVGS 88 (611)
Q Consensus 12 l~~L~~L~Ls~~~~l~~~~~~~~~~~L~~L~L~~c~~l~~i~~s~~~l---~~L~~l~~L~~L~Ls~~~~~~~lp~~l~~ 88 (611)
+++|+.|||++|+...-......++.++.+.+... .+|...+.- .....+++|+.|+|.+ .+...-+..+..
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~----~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~ 122 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN----FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKG 122 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT----EECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTT
T ss_pred hccCeEEecCcceeEEecCcccccccccccccccc----ccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhc
Confidence 78899999999874410001112222222222221 222211100 0001145555566655 333333345556
Q ss_pred CCCCcEEEcCCCCccccCc-cccCCCCCcEEeccCC-----------------CC---------CCCCccc----CCCCC
Q 007237 89 MECLQELLLDGTDIKELPL-SIEHLFGLVQLTLNDC-----------------KN---------LSSLPVA----ISSFQ 137 (611)
Q Consensus 89 l~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~c-----------------~~---------l~~lp~~----l~~l~ 137 (611)
|++|+.|++..+.+..++. .|..+.++..+..... .. ...++.. -....
T Consensus 123 ~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~ 202 (329)
T 3sb4_A 123 CDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPR 202 (329)
T ss_dssp CTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGG
T ss_pred CcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCcc
Confidence 6666666666665554432 3444444444443320 00 0111111 01234
Q ss_pred CCCEEEecCCCCCcccccccCCCCCCCEEeecCccCCCcCcc-cCCCCCCCEEeccCCcCCcccc-cCccCCCCCC-EEE
Q 007237 138 CLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSS-IELLPGLELLNLNDCKNFARVP-SSINGLKSLK-TLN 214 (611)
Q Consensus 138 ~L~~L~L~~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~l~~~-l~~l~~L~~L~L~~~~~~~~lp-~~i~~l~~L~-~L~ 214 (611)
+++.+.+.+.-....+......+++|+++++.+|.++.++.. +.++++|+.+++.++ +..++ ..|.++++|+ .+.
T Consensus 203 ~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~ 280 (329)
T 3sb4_A 203 DINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLE 280 (329)
T ss_dssp GCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEE
T ss_pred ccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEE
Confidence 455555554321111222222478999999999999988875 899999999999986 55555 4588999999 999
Q ss_pred ecCCCCCccc-CcccCCCCCccEEeccCCCcccCCc-cccccCCCcEEEc
Q 007237 215 LSGCCKLENV-PDTLGQVESLEELDISETAVRRPPS-SVFLMKNLRTLSF 262 (611)
Q Consensus 215 l~~c~~l~~~-p~~l~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l 262 (611)
+.+ .+..+ +..|.++++|+.+++.++.+..++. .+..+++|+.++.
T Consensus 281 l~~--~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 281 LPA--SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp ECT--TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred Ecc--cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 987 44454 4678999999999999999987765 5666889988864
No 130
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.25 E-value=9.9e-12 Score=114.33 Aligned_cols=126 Identities=15% Similarity=0.209 Sum_probs=53.0
Q ss_pred CCCccEEEecCCcCcCcCCcccCCCCCCcEEEcCCCCccccCccccCCCCCcEEeccCCCCCCCCcccC-CCCCCCCEEE
Q 007237 65 VESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAI-SSFQCLRNLK 143 (611)
Q Consensus 65 l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l-~~l~~L~~L~ 143 (611)
+.+|++|++++|.+. .+|......++|++|++++|.++.+ ..+..+++|++|++++|. +..+|..+ ..+++|++|+
T Consensus 18 ~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 18 AVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDLTELI 94 (176)
T ss_dssp TTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSC-CCEECSCHHHHCTTCCEEE
T ss_pred cCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCc-ccccCcchhhcCCCCCEEE
Confidence 344444444444433 2222222222445555555444444 344444444444444432 23333222 3344444444
Q ss_pred ecCCCCCccccc--ccCCCCCCCEEeecCccCCCcCcc----cCCCCCCCEEeccCC
Q 007237 144 LSGCSKLKKFPQ--IVTTMEDLSELNLDGTSITEVPSS----IELLPGLELLNLNDC 194 (611)
Q Consensus 144 L~~~~~l~~~p~--~~~~l~~L~~L~L~~~~i~~l~~~----l~~l~~L~~L~L~~~ 194 (611)
+++|.. ..+|. .+..+++|++|++++|.++.+|.. +..+++|+.|++++|
T Consensus 95 L~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 95 LTNNSL-VELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp CCSCCC-CCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred CCCCcC-CcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 444322 23332 344444455555555544444432 444444444444443
No 131
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.25 E-value=1.3e-11 Score=113.61 Aligned_cols=129 Identities=16% Similarity=0.172 Sum_probs=76.1
Q ss_pred cCCCCCCcEEEcCCCCccccCccccCCC-CCcEEeccCCCCCCCCcccCCCCCCCCEEEecCCCCCcccccccCCCCCCC
Q 007237 86 VGSMECLQELLLDGTDIKELPLSIEHLF-GLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLS 164 (611)
Q Consensus 86 l~~l~~L~~L~L~~~~i~~lp~~~~~l~-~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~~~~l~~L~ 164 (611)
+.++.+|++|+++++.++.+|. +..+. +|++|++++|. +..+ ..+..+++|+.|++++|......+..+..+++|+
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~-l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNE-IRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSC-CCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred cCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCC-CCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 4556778888888888877754 33443 77777777754 4444 3466677777777777654332223346666677
Q ss_pred EEeecCccCCCcCc--ccCCCCCCCEEeccCCcCCcccccC----ccCCCCCCEEEecCC
Q 007237 165 ELNLDGTSITEVPS--SIELLPGLELLNLNDCKNFARVPSS----INGLKSLKTLNLSGC 218 (611)
Q Consensus 165 ~L~L~~~~i~~l~~--~l~~l~~L~~L~L~~~~~~~~lp~~----i~~l~~L~~L~l~~c 218 (611)
+|++++|.++.+|. .+..+++|+.|++++|... .+|.. +..+++|+.|++++|
T Consensus 92 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 92 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEEC
T ss_pred EEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcC
Confidence 77777666666655 4555666666666655433 23332 444444444444443
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.24 E-value=8.8e-11 Score=108.00 Aligned_cols=98 Identities=22% Similarity=0.316 Sum_probs=39.6
Q ss_pred EEEcCCCCccccCccccCCCCCcEEeccCCCCCCCCcc-cCCCCCCCCEEEecCCCCCcccccccCCCCCCCEEeecCcc
Q 007237 94 ELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPV-AISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTS 172 (611)
Q Consensus 94 ~L~L~~~~i~~lp~~~~~l~~L~~L~L~~c~~l~~lp~-~l~~l~~L~~L~L~~~~~l~~~p~~~~~l~~L~~L~L~~~~ 172 (611)
.+++++++++.+|..+. ++|++|++++|. +..+|. .+..+++|++|++++|......+..+..+++|++|++++|.
T Consensus 11 ~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 11 EIRCNSKGLTSVPTGIP--SSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp EEECCSSCCSSCCTTCC--TTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEecCCCCccCCCCCC--CCCcEEEeCCCc-ccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 34444444444443221 344444444433 222222 23344444444444443222222233444444444444444
Q ss_pred CCCcCcc-cCCCCCCCEEeccCC
Q 007237 173 ITEVPSS-IELLPGLELLNLNDC 194 (611)
Q Consensus 173 i~~l~~~-l~~l~~L~~L~L~~~ 194 (611)
++.++.. +..+++|+.|++++|
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~N 110 (177)
T 2o6r_A 88 LQSLPNGVFDKLTQLKELALDTN 110 (177)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSS
T ss_pred ccccCHHHhhCCcccCEEECcCC
Confidence 4443332 233444444444444
No 133
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.23 E-value=7e-12 Score=127.74 Aligned_cols=282 Identities=14% Similarity=0.093 Sum_probs=164.9
Q ss_pred CCcccccccccccccccccCccccccCcccc-CCCccEEEecCCcCc--CcCCcccCCCCCCcEEEcCCCCccccC-ccc
Q 007237 34 EAPNLEELYLEGCTKLRKVHPSLLLHNKLIF-VESLKILILSGCLKL--RKFPHVVGSMECLQELLLDGTDIKELP-LSI 109 (611)
Q Consensus 34 ~~~~L~~L~L~~c~~l~~i~~s~~~l~~L~~-l~~L~~L~Ls~~~~~--~~lp~~l~~l~~L~~L~L~~~~i~~lp-~~~ 109 (611)
.+++|+.|.+++.-.... +..++. +++|++|+|++|.+. ...+ +.++.++.+.+..+ .+| ..|
T Consensus 23 ~~~~l~~L~l~g~i~~~~-------~~~l~~~l~~L~~LdLs~n~i~~~~~~~---~~~~~~~~~~~~~~---~I~~~aF 89 (329)
T 3sb4_A 23 EANSITHLTLTGKLNAED-------FRHLRDEFPSLKVLDISNAEIKMYSGKA---GTYPNGKFYIYMAN---FVPAYAF 89 (329)
T ss_dssp HHHHCSEEEEEEEECHHH-------HHHHHHSCTTCCEEEEEEEEECCEEESS---SSSGGGCCEEECTT---EECTTTT
T ss_pred hhCceeEEEEeccccHHH-------HHHHHHhhccCeEEecCcceeEEecCcc---cccccccccccccc---ccCHHHh
Confidence 367889999987421111 122322 788999999998866 1111 12222444444444 233 234
Q ss_pred cC--------CCCCcEEeccCCCCCCCCcc-cCCCCCCCCEEEecCCCCCcccccccCCCCCCCEEeecCcc----CCCc
Q 007237 110 EH--------LFGLVQLTLNDCKNLSSLPV-AISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTS----ITEV 176 (611)
Q Consensus 110 ~~--------l~~L~~L~L~~c~~l~~lp~-~l~~l~~L~~L~L~~~~~l~~~p~~~~~l~~L~~L~L~~~~----i~~l 176 (611)
.. +++|++|++.+ .++.++. .|..+++|+.|++.++.....-+..+....++..+.+.... ...+
T Consensus 90 ~~~~~~~~~g~~~L~~l~L~~--~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i 167 (329)
T 3sb4_A 90 SNVVNGVTKGKQTLEKVILSE--KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRW 167 (329)
T ss_dssp EEEETTEEEECTTCCC-CBCT--TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTT
T ss_pred cccccccccccCCCcEEECCc--cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccc
Confidence 44 88888888876 4666654 47778888888888876655555666666656555544421 1111
Q ss_pred C-cccCCCCCCC-EEeccCCcCCccc-ccCccCCCCCCEEEecCCCCCcccCcccCCCCCccEEeccCCCcccCCcc-cc
Q 007237 177 P-SSIELLPGLE-LLNLNDCKNFARV-PSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSS-VF 252 (611)
Q Consensus 177 ~-~~l~~l~~L~-~L~L~~~~~~~~l-p~~i~~l~~L~~L~l~~c~~l~~~p~~l~~l~~L~~L~l~~~~~~~~~~~-~~ 252 (611)
. ..+.++..|+ .+.+.....+... ...-....++..+.+.+.-...........+++|+.+++.+|.+..++.. +.
T Consensus 168 ~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~ 247 (329)
T 3sb4_A 168 EHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFA 247 (329)
T ss_dssp TTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTT
T ss_pred cccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhh
Confidence 1 1133344444 3333322211110 00111345666676665422111111112368889999998888877654 55
Q ss_pred ccCCCcEEEcCCCCCCCCCCcccccccccccCCccchhhccCCCCCCCCCCC-EEeccCCCCCCCCCCCCCCCCCCCCEE
Q 007237 253 LMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLT-KLDLSDCGLGEGAIPSDIGNLHSLNEL 331 (611)
Q Consensus 253 ~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~-~L~Ls~~~l~~~~~~~~l~~l~~L~~L 331 (611)
.+++|+.|++.++- .. ..-..|.++++|+ .+++.+ ++. ..-+.+|.+|++|+.+
T Consensus 248 ~~~~L~~l~l~~ni--~~---------------------I~~~aF~~~~~L~~~l~l~~-~l~-~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 248 QKKYLLKIKLPHNL--KT---------------------IGQRVFSNCGRLAGTLELPA-SVT-AIEFGAFMGCDNLRYV 302 (329)
T ss_dssp TCTTCCEEECCTTC--CE---------------------ECTTTTTTCTTCCEEEEECT-TCC-EECTTTTTTCTTEEEE
T ss_pred CCCCCCEEECCccc--ce---------------------ehHHHhhCChhccEEEEEcc-cce-EEchhhhhCCccCCEE
Confidence 67888888887641 10 1112377888888 888887 553 2234678889999999
Q ss_pred EcCCCCCCcCCc-ccccCCCcCeee
Q 007237 332 YLSKNNFVTLPA-SINSLLNLKELE 355 (611)
Q Consensus 332 ~L~~n~l~~lp~-~i~~l~~L~~L~ 355 (611)
++++|+++.++. .+..+++|+.++
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EeCCCccCccchhhhcCCcchhhhc
Confidence 998888888876 577788887775
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.19 E-value=3.2e-10 Score=104.20 Aligned_cols=129 Identities=19% Similarity=0.228 Sum_probs=83.8
Q ss_pred CcEEeccCCCCCCCCcccCCCCCCCCEEEecCCCCCcccccccCCCCCCCEEeecCccCCCcCcc-cCCCCCCCEEeccC
Q 007237 115 LVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSS-IELLPGLELLNLND 193 (611)
Q Consensus 115 L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~l~~~-l~~l~~L~~L~L~~ 193 (611)
.+.+++++ ..+..+|..+ .++|+.|++++|......+..+..+++|++|++++|.++.++.. +..+++|+.|++++
T Consensus 9 ~~~l~~~~-~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNS-KGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCS-SCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecC-CCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 45677776 3467777544 46788888888765544445567777888888888877776654 56777777777777
Q ss_pred CcCCcccccCccCCCCCCEEEecCCCCCcccCcccCCCCCccEEeccCCCccc
Q 007237 194 CKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRR 246 (611)
Q Consensus 194 ~~~~~~lp~~i~~l~~L~~L~l~~c~~l~~~p~~l~~l~~L~~L~l~~~~~~~ 246 (611)
|...+..+..+..+++|++|++++|......+..+..+++|+.|++++|.+..
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 76655444455666777777777664443223334566666666666666553
No 135
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.18 E-value=1.4e-13 Score=129.39 Aligned_cols=114 Identities=17% Similarity=0.176 Sum_probs=75.5
Q ss_pred cccCCCCCCcEEEcCCCCccccCccccCCCCCcEEeccCCCCCCCCcccCCCCCCCCEEEecCCCCCcccccccCCCCCC
Q 007237 84 HVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDL 163 (611)
Q Consensus 84 ~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~~~~l~~L 163 (611)
..+..+++|++|++++|.++.+| .+..+++|++|++++|. +..+|..+..+++|+.|++++|... .+| .+..+++|
T Consensus 42 ~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~N~l~-~l~-~~~~l~~L 117 (198)
T 1ds9_A 42 ATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQIA-SLS-GIEKLVNL 117 (198)
T ss_dssp HHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEEEECC-CHH-HHHHHHHS
T ss_pred HHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcCCcCC-cCC-ccccCCCC
Confidence 36667777777777777777776 67777777777777754 4466665555667777777776433 344 45666777
Q ss_pred CEEeecCccCCCcCc--ccCCCCCCCEEeccCCcCCcccc
Q 007237 164 SELNLDGTSITEVPS--SIELLPGLELLNLNDCKNFARVP 201 (611)
Q Consensus 164 ~~L~L~~~~i~~l~~--~l~~l~~L~~L~L~~~~~~~~lp 201 (611)
++|++++|.++.++. .+..+++|++|++++|...+..|
T Consensus 118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 157 (198)
T 1ds9_A 118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK 157 (198)
T ss_dssp SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHH
T ss_pred CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccc
Confidence 777777777776554 56667777777777766544444
No 136
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.17 E-value=2.1e-09 Score=112.05 Aligned_cols=189 Identities=14% Similarity=0.175 Sum_probs=91.0
Q ss_pred CCcccEEEccCCCCCCcCCCCCCCcccccccccccccccccCccccccCccccCCCccEEEecCCcCcCcCCcccCCCCC
Q 007237 12 LNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMEC 91 (611)
Q Consensus 12 l~~L~~L~Ls~~~~l~~~~~~~~~~~L~~L~L~~c~~l~~i~~s~~~l~~L~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~ 91 (611)
+..++.+.+..+-.......|.++ +|+.+.+.. .++.++...+. . .+|+.+.+.. .....-+..+.+|.+
T Consensus 112 ~~~l~~i~ip~~i~~I~~~aF~~~-~L~~i~l~~--~i~~I~~~aF~-----~-~~L~~i~lp~-~l~~I~~~aF~~c~~ 181 (401)
T 4fdw_A 112 LKGYNEIILPNSVKSIPKDAFRNS-QIAKVVLNE--GLKSIGDMAFF-----N-STVQEIVFPS-TLEQLKEDIFYYCYN 181 (401)
T ss_dssp CSSCSEEECCTTCCEECTTTTTTC-CCSEEECCT--TCCEECTTTTT-----T-CCCCEEECCT-TCCEECSSTTTTCTT
T ss_pred cCCccEEEECCccCEehHhhcccC-CccEEEeCC--CccEECHHhcC-----C-CCceEEEeCC-CccEehHHHhhCccc
Confidence 345555555543222222235554 566666654 25555443222 1 2466666654 222222345566666
Q ss_pred CcEEEcCCCCccccCccccCCCCCcEEeccCCCCCCCCcc-cCCCCCCCCEEEecCCCCCcccccccCCCCCCCEEeecC
Q 007237 92 LQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPV-AISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDG 170 (611)
Q Consensus 92 L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~c~~l~~lp~-~l~~l~~L~~L~L~~~~~l~~~p~~~~~l~~L~~L~L~~ 170 (611)
|+.+++..+.++.++.....+.+|+.+.+.. .+..++. .|.++++|+.+++..+
T Consensus 182 L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~l~~~----------------------- 236 (401)
T 4fdw_A 182 LKKADLSKTKITKLPASTFVYAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIEIPEN----------------------- 236 (401)
T ss_dssp CCEEECTTSCCSEECTTTTTTCCCSEEECCT--TCCEECTTTTTTCTTCCCEECCTT-----------------------
T ss_pred CCeeecCCCcceEechhhEeecccCEEEeCC--chheehhhHhhCCCCCCEEecCCC-----------------------
Confidence 6666666666666655444455666666653 2444432 2445555555555431
Q ss_pred ccCCCcCcc-cCCCCCCCEEeccCCcCCccc-ccCccCCCCCCEEEecCCCCC-----cccCcccCCCCCccEEecc
Q 007237 171 TSITEVPSS-IELLPGLELLNLNDCKNFARV-PSSINGLKSLKTLNLSGCCKL-----ENVPDTLGQVESLEELDIS 240 (611)
Q Consensus 171 ~~i~~l~~~-l~~l~~L~~L~L~~~~~~~~l-p~~i~~l~~L~~L~l~~c~~l-----~~~p~~l~~l~~L~~L~l~ 240 (611)
++.++.. +.+ .+|+.+.+.++ +..+ ...+.++++|+.+.+.++... .--+..|.++++|+.+.+.
T Consensus 237 --l~~I~~~aF~~-~~L~~i~lp~~--i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~ 308 (401)
T 4fdw_A 237 --VSTIGQEAFRE-SGITTVKLPNG--VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP 308 (401)
T ss_dssp --CCEECTTTTTT-CCCSEEEEETT--CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC
T ss_pred --ccCcccccccc-CCccEEEeCCC--ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC
Confidence 2222221 222 34555555321 2222 234555666666666554322 1223456677777777765
No 137
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.11 E-value=7e-09 Score=108.20 Aligned_cols=232 Identities=13% Similarity=0.124 Sum_probs=116.8
Q ss_pred CCCCCCCCEEEecCCCCCcccccccCCCCCCCEEeecCccCCCcC-cccCCCCCCCEEeccCCcCCcccccCccCCCCCC
Q 007237 133 ISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVP-SSIELLPGLELLNLNDCKNFARVPSSINGLKSLK 211 (611)
Q Consensus 133 l~~l~~L~~L~L~~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~l~-~~l~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~ 211 (611)
+.++++|+.+.+.+. ....-...+..+.+|+.+.+..+ ++.++ ..+.++..|+.+.+..+. ..+........+|+
T Consensus 158 F~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~--~~i~~~~~~~~~l~ 233 (394)
T 4fs7_A 158 FATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSL--YYLGDFALSKTGVK 233 (394)
T ss_dssp TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTC--CEECTTTTTTCCCC
T ss_pred hcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCc--eEeehhhcccCCCc
Confidence 555666666666542 11222334555566666666543 33222 224555666655554321 22233333445666
Q ss_pred EEEecCCCCCccc-CcccCCCCCccEEeccCCCcccCCccccccCCCcEEEcCCCCCCCCCCcccccccccccCCccchh
Q 007237 212 TLNLSGCCKLENV-PDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLV 290 (611)
Q Consensus 212 ~L~l~~c~~l~~~-p~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (611)
.+.+... ...+ ...+..+..|+.+.+..+...-....+..+..++.+......
T Consensus 234 ~i~ip~~--~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~------------------------ 287 (394)
T 4fs7_A 234 NIIIPDS--FTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVI------------------------ 287 (394)
T ss_dssp EEEECTT--CCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSE------------------------
T ss_pred eEEECCC--ceecccccccccccceeEEcCCCcceeeccccccccccceeccCcee------------------------
Confidence 6665432 1222 223455566666666554333222333344455544433211
Q ss_pred hccCCCCCCCCCCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCCcCCc-ccccCCCcCeeecccccccCcCCCCC
Q 007237 291 ALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPA-SINSLLNLKELEMEDCKRLQFLPQLP 369 (611)
Q Consensus 291 ~~~l~~l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~-~i~~l~~L~~L~L~~c~~L~~lp~lp 369 (611)
..-..+..+.+|+.+.+..+ +. ..-..++.+|++|+.++|..+ ++.+.. ++..|++|+.+.+... ++.|+.-
T Consensus 288 -i~~~~F~~~~~L~~i~l~~~-i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~- 360 (394)
T 4fs7_A 288 -VPEKTFYGCSSLTEVKLLDS-VK-FIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS--LRKIGAN- 360 (394)
T ss_dssp -ECTTTTTTCTTCCEEEECTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT--CCEECTT-
T ss_pred -eccccccccccccccccccc-cc-eechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc--ccEehHH-
Confidence 00112566777887777654 21 122345777888888888643 555543 4666777777765322 2222211
Q ss_pred CCcceeeecCCCCcccccCcccccccCCcccccccchhh
Q 007237 370 PNIIFVKVNGCSSLVTLLGALKLCKSNGIVIECIDSLKL 408 (611)
Q Consensus 370 ~~L~~L~i~~C~sL~~l~~~~~~~~l~~l~~~~c~~L~~ 408 (611)
-..+|++|+.+..+...... ...|.+|.+|+.
T Consensus 361 ------aF~~C~~L~~i~lp~~~~~~-~~~F~~c~~L~~ 392 (394)
T 4fs7_A 361 ------AFQGCINLKKVELPKRLEQY-RYDFEDTTKFKW 392 (394)
T ss_dssp ------TBTTCTTCCEEEEEGGGGGG-GGGBCTTCEEEE
T ss_pred ------HhhCCCCCCEEEECCCCEEh-hheecCCCCCcE
Confidence 24577788777644333322 246788888764
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.08 E-value=1.3e-12 Score=122.74 Aligned_cols=107 Identities=22% Similarity=0.212 Sum_probs=74.6
Q ss_pred CCCccEEEecCCcCcCcCCcccCCCCCCcEEEcCCCCccccCccccCCCCCcEEeccCCCCCCCCcccCCCCCCCCEEEe
Q 007237 65 VESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKL 144 (611)
Q Consensus 65 l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L 144 (611)
+++|++|++++|.+.+ +| .+..+++|++|++++|.++.+|..+..+++|++|++++|. +..+| .+..+++|++|++
T Consensus 47 l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~-l~~l~-~~~~l~~L~~L~l 122 (198)
T 1ds9_A 47 LKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQ-IASLS-GIEKLVNLRVLYM 122 (198)
T ss_dssp TTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEE-CCCHH-HHHHHHHSSEEEE
T ss_pred CCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCc-CCcCC-ccccCCCCCEEEC
Confidence 5677777777776554 55 6667777777777777777777777777777777777753 55566 4666777888888
Q ss_pred cCCCCCcccc--cccCCCCCCCEEeecCccCCCc
Q 007237 145 SGCSKLKKFP--QIVTTMEDLSELNLDGTSITEV 176 (611)
Q Consensus 145 ~~~~~l~~~p--~~~~~l~~L~~L~L~~~~i~~l 176 (611)
++|.... ++ ..+..+++|++|++++|.+...
T Consensus 123 ~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 123 SNNKITN-WGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp SEEECCC-HHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred CCCcCCc-hhHHHHHhcCCCCCEEEecCCccccc
Confidence 7765433 22 3567778888888888877644
No 139
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.03 E-value=9.6e-09 Score=107.08 Aligned_cols=240 Identities=13% Similarity=0.194 Sum_probs=174.0
Q ss_pred CcccccCCCcccEEEccCCCCCCcCC--CCCCCcccccccccccccccccCccccccCccccCCCccEEEecCCcCcCcC
Q 007237 5 PFCFQQHLNMLKVMKLSHSENLIKTP--DFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKF 82 (611)
Q Consensus 5 ~~~~~~~l~~L~~L~Ls~~~~l~~~~--~~~~~~~L~~L~L~~c~~l~~i~~s~~~l~~L~~l~~L~~L~Ls~~~~~~~l 82 (611)
+-..+..+ +|+.+++..+ +..++ .|.++ +|+.+.+.+ .++.++... +..+++|+.+++.++.+...-
T Consensus 128 ~~~aF~~~-~L~~i~l~~~--i~~I~~~aF~~~-~L~~i~lp~--~l~~I~~~a-----F~~c~~L~~l~l~~n~l~~I~ 196 (401)
T 4fdw_A 128 PKDAFRNS-QIAKVVLNEG--LKSIGDMAFFNS-TVQEIVFPS--TLEQLKEDI-----FYYCYNLKKADLSKTKITKLP 196 (401)
T ss_dssp CTTTTTTC-CCSEEECCTT--CCEECTTTTTTC-CCCEEECCT--TCCEECSST-----TTTCTTCCEEECTTSCCSEEC
T ss_pred hHhhcccC-CccEEEeCCC--ccEECHHhcCCC-CceEEEeCC--CccEehHHH-----hhCcccCCeeecCCCcceEec
Confidence 34556665 7999999876 44444 57775 799999975 677776543 345889999999987655443
Q ss_pred CcccCCCCCCcEEEcCCCCccccCc-cccCCCCCcEEeccCCCCCCCCccc-CCCCCCCCEEEecCCCCCcccccccCCC
Q 007237 83 PHVVGSMECLQELLLDGTDIKELPL-SIEHLFGLVQLTLNDCKNLSSLPVA-ISSFQCLRNLKLSGCSKLKKFPQIVTTM 160 (611)
Q Consensus 83 p~~l~~l~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~c~~l~~lp~~-l~~l~~L~~L~L~~~~~l~~~p~~~~~l 160 (611)
...+. +.+|+.+.+..+ ++.++. .|.++.+|+.+.+.. .+..++.. |.+ .+|+.+.+.+ .....-...+.++
T Consensus 197 ~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~--~l~~I~~~aF~~-~~L~~i~lp~-~i~~I~~~aF~~c 270 (401)
T 4fdw_A 197 ASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPE--NVSTIGQEAFRE-SGITTVKLPN-GVTNIASRAFYYC 270 (401)
T ss_dssp TTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCT--TCCEECTTTTTT-CCCSEEEEET-TCCEECTTTTTTC
T ss_pred hhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCC--CccCcccccccc-CCccEEEeCC-CccEEChhHhhCC
Confidence 34444 689999999844 777764 678899999999986 36666654 554 8999999964 2233335678899
Q ss_pred CCCCEEeecCccCC-----CcC-cccCCCCCCCEEeccCCcCCcccc-cCccCCCCCCEEEecCCCCCccc-CcccCCCC
Q 007237 161 EDLSELNLDGTSIT-----EVP-SSIELLPGLELLNLNDCKNFARVP-SSINGLKSLKTLNLSGCCKLENV-PDTLGQVE 232 (611)
Q Consensus 161 ~~L~~L~L~~~~i~-----~l~-~~l~~l~~L~~L~L~~~~~~~~lp-~~i~~l~~L~~L~l~~c~~l~~~-p~~l~~l~ 232 (611)
++|+.+.+.++.+. .++ ..+..+++|+.+.+.+. +..++ ..+.++.+|+.+.+..+ +..+ ...|.++
T Consensus 271 ~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~--i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~aF~~~- 345 (401)
T 4fdw_A 271 PELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES--IRILGQGLLGGNRKVTQLTIPAN--VTQINFSAFNNT- 345 (401)
T ss_dssp TTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCCSCCEEEECTT--CCEECTTSSSSS-
T ss_pred CCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc--eEEEhhhhhcCCCCccEEEECcc--ccEEcHHhCCCC-
Confidence 99999999887765 344 35889999999999852 44554 46888999999999653 4444 4568888
Q ss_pred CccEEeccCCCcccCCcc-cccc-CCCcEEEcCCCC
Q 007237 233 SLEELDISETAVRRPPSS-VFLM-KNLRTLSFSGCN 266 (611)
Q Consensus 233 ~L~~L~l~~~~~~~~~~~-~~~l-~~L~~L~l~~c~ 266 (611)
+|+.+++.++....++.. +..+ .+++.|.+..+.
T Consensus 346 ~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 346 GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 999999999987766543 3334 477888876543
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.99 E-value=2.9e-09 Score=97.09 Aligned_cols=101 Identities=17% Similarity=0.210 Sum_probs=48.2
Q ss_pred cEEEcCCCCccccCccccCCCCCcEEeccCCCCCCCCcccCCCCCCCCEEEecCCCCCcccccccCCCCCCCEEeecCcc
Q 007237 93 QELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTS 172 (611)
Q Consensus 93 ~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~~~~l~~L~~L~L~~~~ 172 (611)
+.++++++.++.+|..+. ++|++|++++|......|..+..+++|++|+|++|......+..+..+++|++|++++|.
T Consensus 12 ~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence 445555555555554432 445555555533222223334455555555555544333333334455555555555555
Q ss_pred CCCcCcc-cCCCCCCCEEeccCCc
Q 007237 173 ITEVPSS-IELLPGLELLNLNDCK 195 (611)
Q Consensus 173 i~~l~~~-l~~l~~L~~L~L~~~~ 195 (611)
++.++.. +..+++|+.|++++|.
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 90 LKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCEeCHHHhcCCCCCCEEEeCCCC
Confidence 5555442 4455555555555543
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.99 E-value=2.5e-09 Score=97.89 Aligned_cols=99 Identities=15% Similarity=0.211 Sum_probs=42.3
Q ss_pred EEEcCCCCccccCccccCCCCCcEEeccCCCCCCCCcccCCCCCCCCEEEecCCCCCcccccccCCCCCCCEEeecCccC
Q 007237 94 ELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSI 173 (611)
Q Consensus 94 ~L~L~~~~i~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~~~~l~~L~~L~L~~~~i 173 (611)
.++++++.++.+|..+. ++|++|++++|......|..+.++++|+.|+|++|......+..+..+++|++|++++|.+
T Consensus 16 ~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l 93 (174)
T 2r9u_A 16 LVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL 93 (174)
T ss_dssp EEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcc
Confidence 44444444444444332 4444444444332222233344444444444444422222222234444444444444444
Q ss_pred CCcCcc-cCCCCCCCEEeccCC
Q 007237 174 TEVPSS-IELLPGLELLNLNDC 194 (611)
Q Consensus 174 ~~l~~~-l~~l~~L~~L~L~~~ 194 (611)
+.+|.. +..+++|++|++++|
T Consensus 94 ~~l~~~~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 94 KSIPRGAFDNLKSLTHIYLYNN 115 (174)
T ss_dssp CCCCTTTTTTCTTCSEEECCSS
T ss_pred ceeCHHHhccccCCCEEEeCCC
Confidence 444433 444444444444444
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.94 E-value=5.4e-09 Score=95.27 Aligned_cols=104 Identities=18% Similarity=0.183 Sum_probs=46.4
Q ss_pred CCEEEecCCCCCcccccccCCCCCCCEEeecCccCCCc-CcccCCCCCCCEEeccCCcCCcccccCccCCCCCCEEEecC
Q 007237 139 LRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEV-PSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSG 217 (611)
Q Consensus 139 L~~L~L~~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~l-~~~l~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~ 217 (611)
.+.++++++ .+..+|..+ .++|++|++++|.++.+ |..+..+++|++|++++|+..+..+..+..+++|++|++++
T Consensus 11 ~~~l~~s~n-~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGK-SLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTS-CCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCC-CcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 345555553 233344333 24455555555555544 22344555555555555443333333334444455555444
Q ss_pred CCCCcccCcccCCCCCccEEeccCCCcc
Q 007237 218 CCKLENVPDTLGQVESLEELDISETAVR 245 (611)
Q Consensus 218 c~~l~~~p~~l~~l~~L~~L~l~~~~~~ 245 (611)
|......+..+..+++|+.|++++|.+.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 4333222223444444444444444433
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.94 E-value=5.5e-09 Score=95.62 Aligned_cols=103 Identities=19% Similarity=0.230 Sum_probs=44.9
Q ss_pred CEEEecCCCCCcccccccCCCCCCCEEeecCccCCCc-CcccCCCCCCCEEeccCCcCCcccccCccCCCCCCEEEecCC
Q 007237 140 RNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEV-PSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGC 218 (611)
Q Consensus 140 ~~L~L~~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~l-~~~l~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~c 218 (611)
+.++++++ .+..+|..+. ++|++|++++|.++.+ |..+..+++|++|++++|+..+..+..+..+++|++|++++|
T Consensus 15 ~~l~~~~n-~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNI-RLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSS-CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCC-CCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 44555543 2344444332 4455555555555544 223445555555555554433322222344444444444444
Q ss_pred CCCcccCcccCCCCCccEEeccCCCcc
Q 007237 219 CKLENVPDTLGQVESLEELDISETAVR 245 (611)
Q Consensus 219 ~~l~~~p~~l~~l~~L~~L~l~~~~~~ 245 (611)
......+..+..+++|+.|++++|.+.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 332222222444444444444444443
No 144
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.89 E-value=1.4e-07 Score=98.30 Aligned_cols=324 Identities=13% Similarity=0.135 Sum_probs=184.7
Q ss_pred CcccccCCCcccEEEccCCCCCCcCC--CCCCCcccccccccccccccccCccccccCccccCCCccEEEecCCcCcCcC
Q 007237 5 PFCFQQHLNMLKVMKLSHSENLIKTP--DFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKF 82 (611)
Q Consensus 5 ~~~~~~~l~~L~~L~Ls~~~~l~~~~--~~~~~~~L~~L~L~~c~~l~~i~~s~~~l~~L~~l~~L~~L~Ls~~~~~~~l 82 (611)
....+.+|.+|+.+.|..+ +..++ .|.+|++|+.+++.+ .++.++...+ ..+.+|+.+.+... ....-
T Consensus 63 g~~AF~~c~~L~~i~lp~~--i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF-----~~c~~L~~i~~p~~-l~~i~ 132 (394)
T 4fs7_A 63 GYAAFQGCRKVTEIKIPST--VREIGEFAFENCSKLEIINIPD--SVKMIGRCTF-----SGCYALKSILLPLM-LKSIG 132 (394)
T ss_dssp CTTTTTTCTTEEEEECCTT--CCEECTTTTTTCTTCCEECCCT--TCCEECTTTT-----TTCTTCCCCCCCTT-CCEEC
T ss_pred HHHHhhCCCCceEEEeCCC--ccCcchhHhhCCCCCcEEEeCC--CceEccchhh-----cccccchhhcccCc-eeeec
Confidence 3456888999999999754 44444 689999999999965 3566654322 22455555444322 11111
Q ss_pred CcccCCCCCCcEEEcCCCCcccc-CccccCCCCCcEEeccCCCCCCCCcc-cCCCCCCCCEEEecCCCCCccc-ccccCC
Q 007237 83 PHVVGSMECLQELLLDGTDIKEL-PLSIEHLFGLVQLTLNDCKNLSSLPV-AISSFQCLRNLKLSGCSKLKKF-PQIVTT 159 (611)
Q Consensus 83 p~~l~~l~~L~~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~c~~l~~lp~-~l~~l~~L~~L~L~~~~~l~~~-p~~~~~ 159 (611)
...+..+..++..... .+..+ ...+..+.+|+.+.+.+. +..++. .+.++.+|+.+.+..+ +..+ ...+.+
T Consensus 133 ~~aF~~~~~~~~~~~~--~~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~ 206 (394)
T 4fs7_A 133 VEAFKGCDFKEITIPE--GVTVIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAE 206 (394)
T ss_dssp TTTTTTCCCSEEECCT--TCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTT
T ss_pred ceeeecccccccccCc--cccccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCC--ceEeCchhhcc
Confidence 1233333322222211 11222 235667777777777542 333433 3566777777777543 2222 344556
Q ss_pred CCCCCEEeecCccCCCcCcccCCCCCCCEEeccCCcCCccc-ccCccCCCCCCEEEecCCCCCcccCcccCCCCCccEEe
Q 007237 160 MEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARV-PSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELD 238 (611)
Q Consensus 160 l~~L~~L~L~~~~i~~l~~~l~~l~~L~~L~L~~~~~~~~l-p~~i~~l~~L~~L~l~~c~~l~~~p~~l~~l~~L~~L~ 238 (611)
+..|+.+.+..+.. .+........+|+.+.+... ...+ ...+..+.+|+.+.+..+ ....-...+..+..++.+.
T Consensus 207 ~~~L~~i~~~~~~~-~i~~~~~~~~~l~~i~ip~~--~~~i~~~~f~~~~~l~~~~~~~~-~~~i~~~~F~~~~~l~~~~ 282 (394)
T 4fs7_A 207 CILLENMEFPNSLY-YLGDFALSKTGVKNIIIPDS--FTELGKSVFYGCTDLESISIQNN-KLRIGGSLFYNCSGLKKVI 282 (394)
T ss_dssp CTTCCBCCCCTTCC-EECTTTTTTCCCCEEEECTT--CCEECSSTTTTCSSCCEEEECCT-TCEECSCTTTTCTTCCEEE
T ss_pred ccccceeecCCCce-EeehhhcccCCCceEEECCC--ceecccccccccccceeEEcCCC-cceeeccccccccccceec
Confidence 66676666554322 22222333456777766542 1222 234566777887777653 2222234566677777777
Q ss_pred ccCCCcccCCccccccCCCcEEEcCCCCCCCCCCcccccccccccCCccchhhccCCCCCCCCCCCEEeccCCCCCCCCC
Q 007237 239 ISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAI 318 (611)
Q Consensus 239 l~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~ 318 (611)
.....+.+ ..+..+.+|+.+.+..+-. ...-..|.++.+|+.+++..+ +. ..-
T Consensus 283 ~~~~~i~~--~~F~~~~~L~~i~l~~~i~-----------------------~I~~~aF~~c~~L~~i~lp~~-v~-~I~ 335 (394)
T 4fs7_A 283 YGSVIVPE--KTFYGCSSLTEVKLLDSVK-----------------------FIGEEAFESCTSLVSIDLPYL-VE-EIG 335 (394)
T ss_dssp ECSSEECT--TTTTTCTTCCEEEECTTCC-----------------------EECTTTTTTCTTCCEECCCTT-CC-EEC
T ss_pred cCceeecc--ccccccccccccccccccc-----------------------eechhhhcCCCCCCEEEeCCc-cc-EEh
Confidence 66543322 2344567777777754210 001123778889999998654 32 223
Q ss_pred CCCCCCCCCCCEEEcCCCCCCcCCc-ccccCCCcCeeecccccccCcCCCCCCCcceeeecCCCCcccc
Q 007237 319 PSDIGNLHSLNELYLSKNNFVTLPA-SINSLLNLKELEMEDCKRLQFLPQLPPNIIFVKVNGCSSLVTL 386 (611)
Q Consensus 319 ~~~l~~l~~L~~L~L~~n~l~~lp~-~i~~l~~L~~L~L~~c~~L~~lp~lp~~L~~L~i~~C~sL~~l 386 (611)
..++.+|++|+.+.+..+ ++.+.. ++..|++|+.+++... ++.+ . -...+|++|+.+
T Consensus 336 ~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~--~~~~-------~-~~F~~c~~L~~I 393 (394)
T 4fs7_A 336 KRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR--LEQY-------R-YDFEDTTKFKWI 393 (394)
T ss_dssp TTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG--GGGG-------G-GGBCTTCEEEEE
T ss_pred HHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC--CEEh-------h-heecCCCCCcEE
Confidence 457889999999999766 666654 5788899999988643 2222 1 246788888875
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.71 E-value=4.4e-08 Score=100.16 Aligned_cols=100 Identities=19% Similarity=0.149 Sum_probs=53.9
Q ss_pred EEcCCC-CccccCccccCCCCCcEEeccCCCCCCCCc-ccCCCCCCCCEEEecCCCCCcccccccCCCCCCCEEeecCcc
Q 007237 95 LLLDGT-DIKELPLSIEHLFGLVQLTLNDCKNLSSLP-VAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTS 172 (611)
Q Consensus 95 L~L~~~-~i~~lp~~~~~l~~L~~L~L~~c~~l~~lp-~~l~~l~~L~~L~L~~~~~l~~~p~~~~~l~~L~~L~L~~~~ 172 (611)
++.+++ +++.+|. +..+++|++|+|++++.+..+| ..|..+++|+.|+|++|...+..|..+.++++|++|+|++|.
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence 344444 5555555 5555555666665423344444 345556666666666655444445555666666666666666
Q ss_pred CCCcCcccCCCCCCCEEeccCCc
Q 007237 173 ITEVPSSIELLPGLELLNLNDCK 195 (611)
Q Consensus 173 i~~l~~~l~~l~~L~~L~L~~~~ 195 (611)
++.+|..+.....|+.|+|.+|.
T Consensus 92 l~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 92 LESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp CSCCCSTTTCSCCCCEEECCSSC
T ss_pred cceeCHHHcccCCceEEEeeCCC
Confidence 66655543222225555555544
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.70 E-value=7.3e-10 Score=114.45 Aligned_cols=161 Identities=16% Similarity=0.127 Sum_probs=76.4
Q ss_pred CCCccEEEecCCcCcCcCCc----ccC-CCCCCcEEEcCCCCccc--cCccccCCCCCcEEeccCCCCCCCCcccCCCCC
Q 007237 65 VESLKILILSGCLKLRKFPH----VVG-SMECLQELLLDGTDIKE--LPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQ 137 (611)
Q Consensus 65 l~~L~~L~Ls~~~~~~~lp~----~l~-~l~~L~~L~L~~~~i~~--lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~ 137 (611)
+++|++|+|++|.+...... .+. ...+|++|++++|.+.. +..-...+.+|++|++++|.....-...+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L---- 146 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDL---- 146 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHH----
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHH----
Confidence 46677888888776532222 222 22567777777766642 11112223455555555543211111111
Q ss_pred CCCEEEecCCCCCccccccc-CCCCCCCEEeecCccCCC-----cCcccCCCCCCCEEeccCCcCCc----ccccCccCC
Q 007237 138 CLRNLKLSGCSKLKKFPQIV-TTMEDLSELNLDGTSITE-----VPSSIELLPGLELLNLNDCKNFA----RVPSSINGL 207 (611)
Q Consensus 138 ~L~~L~L~~~~~l~~~p~~~-~~l~~L~~L~L~~~~i~~-----l~~~l~~l~~L~~L~L~~~~~~~----~lp~~i~~l 207 (611)
...+ ...++|++|+|++|.++. ++..+...++|++|+|++|.... .++..+...
T Consensus 147 ----------------~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~ 210 (372)
T 3un9_A 147 ----------------RDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRN 210 (372)
T ss_dssp ----------------HHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGC
T ss_pred ----------------HHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcC
Confidence 1111 123344444444444432 22233444455555555554322 123334445
Q ss_pred CCCCEEEecCCCCCc----ccCcccCCCCCccEEeccCCCcc
Q 007237 208 KSLKTLNLSGCCKLE----NVPDTLGQVESLEELDISETAVR 245 (611)
Q Consensus 208 ~~L~~L~l~~c~~l~----~~p~~l~~l~~L~~L~l~~~~~~ 245 (611)
++|++|++++|.... .++..+...++|+.|++++|.+.
T Consensus 211 ~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 211 RQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp SCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred CCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 566666666665432 23333445567777777777665
No 147
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.67 E-value=3.8e-06 Score=87.31 Aligned_cols=305 Identities=10% Similarity=0.163 Sum_probs=136.9
Q ss_pred ccccCCC-cccEEEccCCCCCCcCCCCCCCccccccccccc--ccccccCccccccCccccCCCccEEEecCCcCcCcCC
Q 007237 7 CFQQHLN-MLKVMKLSHSENLIKTPDFTEAPNLEELYLEGC--TKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFP 83 (611)
Q Consensus 7 ~~~~~l~-~L~~L~Ls~~~~l~~~~~~~~~~~L~~L~L~~c--~~l~~i~~s~~~l~~L~~l~~L~~L~Ls~~~~~~~lp 83 (611)
..+..++ .|+.+.+..+-.......|.+|.+|+.+.+..+ ..++.+....+ ..+.+|+.+.+..+ ....-.
T Consensus 57 ~aF~~~~~~L~sI~iP~svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF-----~~c~~L~~i~~~~~-~~~I~~ 130 (394)
T 4gt6_A 57 RVFCNYKYVLTSVQIPDTVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAF-----MFCSELTDIPILDS-VTEIDS 130 (394)
T ss_dssp TTTTTCCSCCCEEEECTTCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTT-----TTCTTCCBCGGGTT-CSEECT
T ss_pred hhccCCCCcCEEEEECCCeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhc-----hhcccceeeccCCc-cceehh
Confidence 3455553 477777765422222335777888888877653 23454443322 22344444444322 111122
Q ss_pred cccCCCCCCcEEEcCCCCccccC-ccccCCCCCcEEeccCCCCCCCCcccCCCCCCCCEEEecCCCCCcccccccCCCCC
Q 007237 84 HVVGSMECLQELLLDGTDIKELP-LSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMED 162 (611)
Q Consensus 84 ~~l~~l~~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~~~~l~~ 162 (611)
..+..+.+|+.+.+... +..++ ..+..+..|+.+.+.+ .+..+........+|+.+.+... ....-...+....+
T Consensus 131 ~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~--~~~~I~~~aF~~~~l~~i~ip~~-~~~i~~~af~~c~~ 206 (394)
T 4gt6_A 131 EAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPD--SVTAIEERAFTGTALTQIHIPAK-VTRIGTNAFSECFA 206 (394)
T ss_dssp TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCCCSEEEECTT-CCEECTTTTTTCTT
T ss_pred hhhhhhcccccccccce-eeeecccceecccccccccccc--eeeEeccccccccceeEEEECCc-ccccccchhhhccc
Confidence 34556666666666533 23332 3455566666666653 23444333222345666655432 11112233344444
Q ss_pred CCEEeecCccCCCcCcccCC-CCCCCEEeccCCcCCcccccCccCCCCCCEEEecCCCCCccc-CcccCCCCCccEEecc
Q 007237 163 LSELNLDGTSITEVPSSIEL-LPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENV-PDTLGQVESLEELDIS 240 (611)
Q Consensus 163 L~~L~L~~~~i~~l~~~l~~-l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~c~~l~~~-p~~l~~l~~L~~L~l~ 240 (611)
+................+.. ......-. ........+..+.+.. .+..+ ...+.++..|+.+.+.
T Consensus 207 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~ip~--~v~~i~~~aF~~c~~L~~i~lp 273 (394)
T 4gt6_A 207 LSTITSDSESYPAIDNVLYEKSANGDYAL-----------IRYPSQREDPAFKIPN--GVARIETHAFDSCAYLASVKMP 273 (394)
T ss_dssp CCEEEECCSSSCBSSSCEEEECTTSCEEE-----------EECCTTCCCSEEECCT--TEEEECTTTTTTCSSCCEEECC
T ss_pred cceecccccccccccceeecccccccccc-----------cccccccccceEEcCC--cceEcccceeeecccccEEecc
Confidence 44444433222211110000 00000000 0000111222222211 01111 1234555566666554
Q ss_pred CCCcccCCccccccCCCcEEEcCCCCCCCCCCcccccccccccCCccchhhccCCCCCCCCCCCEEeccCCCCCCCCCCC
Q 007237 241 ETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPS 320 (611)
Q Consensus 241 ~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~~~ 320 (611)
.....-....+..+++|+.+.+...-. ...-..|.++.+|+.+++..+ +. ..-..
T Consensus 274 ~~~~~I~~~aF~~c~~L~~i~l~~~i~-----------------------~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~ 328 (394)
T 4gt6_A 274 DSVVSIGTGAFMNCPALQDIEFSSRIT-----------------------ELPESVFAGCISLKSIDIPEG-IT-QILDD 328 (394)
T ss_dssp TTCCEECTTTTTTCTTCCEEECCTTCC-----------------------EECTTTTTTCTTCCEEECCTT-CC-EECTT
T ss_pred cccceecCcccccccccccccCCCccc-----------------------ccCceeecCCCCcCEEEeCCc-cc-EehHh
Confidence 433222223344456666666542110 001112666777777777653 21 11234
Q ss_pred CCCCCCCCCEEEcCCCCCCcCCc-ccccCCCcCeeeccccc
Q 007237 321 DIGNLHSLNELYLSKNNFVTLPA-SINSLLNLKELEMEDCK 360 (611)
Q Consensus 321 ~l~~l~~L~~L~L~~n~l~~lp~-~i~~l~~L~~L~L~~c~ 360 (611)
++.+|.+|+.+.|..+ ++.+.. .+.+|++|+.+++.+..
T Consensus 329 aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 329 AFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred HhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence 6777788888887543 566654 56777888888776543
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.64 E-value=1e-07 Score=97.43 Aligned_cols=94 Identities=17% Similarity=0.150 Sum_probs=46.3
Q ss_pred cCCCcCcccCCCCCCCEEeccC-CcCCcccccCccCCCCCCEEEecCCCCCcccCcccCCCCCccEEeccCCCcccCCcc
Q 007237 172 SITEVPSSIELLPGLELLNLND-CKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSS 250 (611)
Q Consensus 172 ~i~~l~~~l~~l~~L~~L~L~~-~~~~~~lp~~i~~l~~L~~L~l~~c~~l~~~p~~l~~l~~L~~L~l~~~~~~~~~~~ 250 (611)
.++.+|. +..+++|+.|+|++ |...+..+..+..+++|+.|+|++|......|..|+.+++|+.|+|++|.+..+|..
T Consensus 20 ~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 98 (347)
T 2ifg_A 20 ALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWK 98 (347)
T ss_dssp CCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCST
T ss_pred CCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHH
Confidence 4444444 44444445555543 333322233444555555555555543333344455555555555555555555544
Q ss_pred ccccCCCcEEEcCCCC
Q 007237 251 VFLMKNLRTLSFSGCN 266 (611)
Q Consensus 251 ~~~l~~L~~L~l~~c~ 266 (611)
......|+.|++.+|.
T Consensus 99 ~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 99 TVQGLSLQELVLSGNP 114 (347)
T ss_dssp TTCSCCCCEEECCSSC
T ss_pred HcccCCceEEEeeCCC
Confidence 4433336666666654
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.62 E-value=3.6e-09 Score=109.25 Aligned_cols=131 Identities=15% Similarity=0.114 Sum_probs=89.9
Q ss_pred CCCCEEEecCCCCCcc-cccccCCCCCCCEEeecCccCCCc-----Cccc-CCCCCCCEEeccCCcCCc----ccccCcc
Q 007237 137 QCLRNLKLSGCSKLKK-FPQIVTTMEDLSELNLDGTSITEV-----PSSI-ELLPGLELLNLNDCKNFA----RVPSSIN 205 (611)
Q Consensus 137 ~~L~~L~L~~~~~l~~-~p~~~~~l~~L~~L~L~~~~i~~l-----~~~l-~~l~~L~~L~L~~~~~~~----~lp~~i~ 205 (611)
++|+.|+|++|..... .......+++|++|+|++|.++.. ...+ ...++|+.|++++|.... .++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 4566666666544322 112222345677777777777632 2223 356899999999997643 2444557
Q ss_pred CCCCCCEEEecCCCCCc----ccCcccCCCCCccEEeccCCCccc-----CCccccccCCCcEEEcCCCCC
Q 007237 206 GLKSLKTLNLSGCCKLE----NVPDTLGQVESLEELDISETAVRR-----PPSSVFLMKNLRTLSFSGCNG 267 (611)
Q Consensus 206 ~l~~L~~L~l~~c~~l~----~~p~~l~~l~~L~~L~l~~~~~~~-----~~~~~~~l~~L~~L~l~~c~~ 267 (611)
.+++|++|++++|.... .++..+...++|+.|++++|.+.. +...+...++|++|++++|..
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence 78999999999997543 235567778899999999999873 334455679999999999973
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.55 E-value=4.1e-08 Score=100.56 Aligned_cols=57 Identities=18% Similarity=0.223 Sum_probs=25.3
Q ss_pred ccCCCCCcEEeccCCCCCCCCcccCCCCCCCCEEEecCCCCCccccccc--CCCCCCCEEee
Q 007237 109 IEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIV--TTMEDLSELNL 168 (611)
Q Consensus 109 ~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~~--~~l~~L~~L~L 168 (611)
+..+++|+.|++++|..+ .++. +. +++|++|++..|.........+ ..+++|+.|+|
T Consensus 168 l~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L 226 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVL 226 (362)
T ss_dssp HHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEE
T ss_pred HhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEE
Confidence 344555555555554222 2222 22 4556666655544322222222 14555555555
No 151
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.48 E-value=8.5e-06 Score=84.69 Aligned_cols=301 Identities=11% Similarity=0.117 Sum_probs=152.0
Q ss_pred CCcccccCCCcccEEEccCCC--CCCcCC--CCCCCcccccccccccccccccCccccccCccccCCCccEEEecCCcCc
Q 007237 4 APFCFQQHLNMLKVMKLSHSE--NLIKTP--DFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKL 79 (611)
Q Consensus 4 ~~~~~~~~l~~L~~L~Ls~~~--~l~~~~--~~~~~~~L~~L~L~~c~~l~~i~~s~~~l~~L~~l~~L~~L~Ls~~~~~ 79 (611)
+....+.+|++|+.+.++.+. .+..++ .|..+.+|+.+.+.. .++.++... +..+.+|+.+.+... ..
T Consensus 78 Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~--~~~~I~~~a-----F~~c~~L~~i~lp~~-~~ 149 (394)
T 4gt6_A 78 IGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILD--SVTEIDSEA-----FHHCEELDTVTIPEG-VT 149 (394)
T ss_dssp ECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGT--TCSEECTTT-----TTTCTTCCEEECCTT-CC
T ss_pred EhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCC--ccceehhhh-----hhhhcccccccccce-ee
Confidence 345678899999999998763 344444 588999999988854 466665433 234788999988643 22
Q ss_pred CcCCcccCCCCCCcEEEcCCCCccccCccccCCCCCcEEeccCCCCCCCC-cccCCCCCCCCEEEecCCCCCccccccc-
Q 007237 80 RKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSL-PVAISSFQCLRNLKLSGCSKLKKFPQIV- 157 (611)
Q Consensus 80 ~~lp~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~c~~l~~l-p~~l~~l~~L~~L~L~~~~~l~~~p~~~- 157 (611)
..-...+..+..|+.+.+..+ ++.+........+|+.+.+... +..+ ...+..+.+|+........... ....+
T Consensus 150 ~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~--~~~i~~~af~~c~~l~~~~~~~~~~~~-~~~~~~ 225 (394)
T 4gt6_A 150 SVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIPAK--VTRIGTNAFSECFALSTITSDSESYPA-IDNVLY 225 (394)
T ss_dssp EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEECTT--CCEECTTTTTTCTTCCEEEECCSSSCB-SSSCEE
T ss_pred eecccceecccccccccccce-eeEeccccccccceeEEEECCc--ccccccchhhhccccceeccccccccc-ccceee
Confidence 223346778899999998764 5566554444567888888642 2222 2346667778777765432211 11100
Q ss_pred CCCCCCCEEeecCccCCCcCcccCCCCCCCEEeccCCcCCccc-ccCccCCCCCCEEEecCCCCCcccCcccCCCCCccE
Q 007237 158 TTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARV-PSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEE 236 (611)
Q Consensus 158 ~~l~~L~~L~L~~~~i~~l~~~l~~l~~L~~L~L~~~~~~~~l-p~~i~~l~~L~~L~l~~c~~l~~~p~~l~~l~~L~~ 236 (611)
............ ......+..+.+.+ ....+ ...+..+.+|+.+.+.... ..--...+.++++|+.
T Consensus 226 ~~~~~~~~~~~~----------~~~~~~~~~~~ip~--~v~~i~~~aF~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~ 292 (394)
T 4gt6_A 226 EKSANGDYALIR----------YPSQREDPAFKIPN--GVARIETHAFDSCAYLASVKMPDSV-VSIGTGAFMNCPALQD 292 (394)
T ss_dssp EECTTSCEEEEE----------CCTTCCCSEEECCT--TEEEECTTTTTTCSSCCEEECCTTC-CEECTTTTTTCTTCCE
T ss_pred cccccccccccc----------cccccccceEEcCC--cceEcccceeeecccccEEeccccc-ceecCccccccccccc
Confidence 000000000000 00111122222211 01111 1123344444444443211 1111123444555555
Q ss_pred EeccCCCcccCCc-cccccCCCcEEEcCCCCCCCCCCcccccccccccCCccchhhccCCCCCCCCCCCEEeccCCCCCC
Q 007237 237 LDISETAVRRPPS-SVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGE 315 (611)
Q Consensus 237 L~l~~~~~~~~~~-~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~ 315 (611)
+.+.. .+..++. .+..+.+|+.+.+..+- . ...-..|.+|.+|+.+.+..+ +.
T Consensus 293 i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~v--~---------------------~I~~~aF~~C~~L~~i~ip~s-v~- 346 (394)
T 4gt6_A 293 IEFSS-RITELPESVFAGCISLKSIDIPEGI--T---------------------QILDDAFAGCEQLERIAIPSS-VT- 346 (394)
T ss_dssp EECCT-TCCEECTTTTTTCTTCCEEECCTTC--C---------------------EECTTTTTTCTTCCEEEECTT-CC-
T ss_pred ccCCC-cccccCceeecCCCCcCEEEeCCcc--c---------------------EehHhHhhCCCCCCEEEECcc-cC-
Confidence 55532 2222322 23345666666654321 0 001123677888888888654 32
Q ss_pred CCCCCCCCCCCCCCEEEcCCCCCCcCCcccccCCCcCeeecc
Q 007237 316 GAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEME 357 (611)
Q Consensus 316 ~~~~~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~ 357 (611)
..-..++.+|++|+.+++.++.... ..+..+.+|+.+.+.
T Consensus 347 ~I~~~aF~~C~~L~~i~~~~~~~~~--~~~~~~~~L~~i~i~ 386 (394)
T 4gt6_A 347 KIPESAFSNCTALNNIEYSGSRSQW--NAISTDSGLQNLPVA 386 (394)
T ss_dssp BCCGGGGTTCTTCCEEEESSCHHHH--HTCBCCCCC------
T ss_pred EEhHhHhhCCCCCCEEEECCceeeh--hhhhccCCCCEEEeC
Confidence 1223567888999999988764221 234555566666543
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.46 E-value=0.00011 Score=75.60 Aligned_cols=37 Identities=22% Similarity=0.257 Sum_probs=17.0
Q ss_pred CCCCCCCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcC
Q 007237 297 LSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLS 334 (611)
Q Consensus 297 l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~L~ 334 (611)
+.++++|+.+.+.++.+. ..-..++.+|.+|+.+.|.
T Consensus 282 F~~c~~L~~i~l~~~~i~-~I~~~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 282 CSGCSNLTKVVMDNSAIE-TLEPRVFMDCVKLSSVTLP 318 (379)
T ss_dssp TTTCTTCCEEEECCTTCC-EECTTTTTTCTTCCEEECC
T ss_pred cccccccccccccccccc-eehhhhhcCCCCCCEEEcC
Confidence 444555555555544432 1112344555555555553
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.45 E-value=9.6e-08 Score=97.79 Aligned_cols=136 Identities=21% Similarity=0.249 Sum_probs=93.3
Q ss_pred CCcccCCCCCCCCEEEecCCCCCcccccccCCCCCCCEEeecCccCCCc-Cccc--CCCCCCCEEeccCCcC-------C
Q 007237 128 SLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEV-PSSI--ELLPGLELLNLNDCKN-------F 197 (611)
Q Consensus 128 ~lp~~l~~l~~L~~L~L~~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~l-~~~l--~~l~~L~~L~L~~~~~-------~ 197 (611)
.++..+..+++|+.|++++|... .++. + .+++|+.|++..+.+..- ...+ ..+++|+.|+|+.+.. .
T Consensus 163 ~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~ 239 (362)
T 2ra8_A 163 DLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDM 239 (362)
T ss_dssp BCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCG
T ss_pred CHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhH
Confidence 34455567899999999997433 3343 3 378999999998877521 1222 3689999999863211 1
Q ss_pred cccccCc--cCCCCCCEEEecCCCCCcccCccc---CCCCCccEEeccCCCccc-----CCccccccCCCcEEEcCCCC
Q 007237 198 ARVPSSI--NGLKSLKTLNLSGCCKLENVPDTL---GQVESLEELDISETAVRR-----PPSSVFLMKNLRTLSFSGCN 266 (611)
Q Consensus 198 ~~lp~~i--~~l~~L~~L~l~~c~~l~~~p~~l---~~l~~L~~L~l~~~~~~~-----~~~~~~~l~~L~~L~l~~c~ 266 (611)
..+...+ ..+++|++|++.+|......+..+ ..+++|+.|+++.|.+.. ++..+..+++|+.|++++|.
T Consensus 240 ~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 240 NVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp GGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred HHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 1111222 357999999999987654332222 357899999999998874 44555678999999999875
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.34 E-value=0.00012 Score=75.43 Aligned_cols=282 Identities=12% Similarity=0.122 Sum_probs=133.1
Q ss_pred CCCcccEEEccCCCCCCcCCCCCCCcccccccccccccccccCccccccCccccCCCccEEEecCCcCcCcCCcccCCCC
Q 007237 11 HLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSME 90 (611)
Q Consensus 11 ~l~~L~~L~Ls~~~~l~~~~~~~~~~~L~~L~L~~c~~l~~i~~s~~~l~~L~~l~~L~~L~Ls~~~~~~~lp~~l~~l~ 90 (611)
...+|+.+.+...-..+....|.+|.+|+.++|.. .++.+....+. .+ +|+.+.+..+ ...+.+......
T Consensus 44 ~~~~i~~v~ip~~vt~Ig~~aF~~C~~L~~I~lp~--~v~~Ig~~aF~-----~c-~l~~i~~~~~--l~~I~~~aF~~~ 113 (379)
T 4h09_A 44 DRDRISEVRVNSGITSIGEANFNSCYNMTKVTVAS--TVTSIGDGAFA-----DT-KLQSYTGMER--VKKFGDYVFQGT 113 (379)
T ss_dssp GGGGCSEEEECTTEEEECTTTTTTCTTCCEEEECT--TCCEECTTTTT-----TC-CCCEEEECTT--CCEECTTTTTTC
T ss_pred cccCCEEEEeCCCccChHHHHhhCCCCCCEEEeCC--cceEechhhhc-----CC-CCceEECCce--eeEeccceeccC
Confidence 34566666665432112222466777777777643 35555443322 12 3444444322 122222111223
Q ss_pred CCcEEEcCCCCccccCccccCCCCCcEEeccCCCCCCCCc-ccCCCCCCCCEEEecCCCCCcc------------ccccc
Q 007237 91 CLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLP-VAISSFQCLRNLKLSGCSKLKK------------FPQIV 157 (611)
Q Consensus 91 ~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~c~~l~~lp-~~l~~l~~L~~L~L~~~~~l~~------------~p~~~ 157 (611)
+|+.+.+..+ +..+........+|+.+.+.. .+..+. ..+..+.+++.+.+........ ....+
T Consensus 114 ~L~~i~lp~~-~~~i~~~~F~~~~l~~~~~~~--~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (379)
T 4h09_A 114 DLDDFEFPGA-TTEIGNYIFYNSSVKRIVIPK--SVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESY 190 (379)
T ss_dssp CCSEEECCTT-CCEECTTTTTTCCCCEEEECT--TCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEEC
T ss_pred CcccccCCCc-cccccccccccceeeeeeccc--eeeccccchhcccccccccccccccceeecccceecccccceeccc
Confidence 5666666543 223322221222344444332 122222 2244455666665554322111 11112
Q ss_pred CCCCCCCEEeecCccCCCcCcccCCCCCCCEEeccCCcCCccc-ccCccCCCCCCEEEecCCCCCcccC-cccCCCCCcc
Q 007237 158 TTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARV-PSSINGLKSLKTLNLSGCCKLENVP-DTLGQVESLE 235 (611)
Q Consensus 158 ~~l~~L~~L~L~~~~i~~l~~~l~~l~~L~~L~L~~~~~~~~l-p~~i~~l~~L~~L~l~~c~~l~~~p-~~l~~l~~L~ 235 (611)
.....+..+.+...........+.....|+.+.+... ...+ ...+..+.+|+.+.+..+ +..+. ..+.++.+|+
T Consensus 191 ~~~~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~--~~~i~~~~f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~ 266 (379)
T 4h09_A 191 PAAKTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSG--VTTLGDGAFYGMKALDEIAIPKN--VTSIGSFLLQNCTALK 266 (379)
T ss_dssp CTTCCCSEEECCTTCCEECTTTTTTCSSCSEEECCTT--CCEECTTTTTTCSSCCEEEECTT--CCEECTTTTTTCTTCC
T ss_pred cccccccccccccceeEEeecccccccccceeeeccc--eeEEccccccCCccceEEEcCCC--ccEeCccccceeehhc
Confidence 2223333333332221112223445566776666542 2222 234566777888777543 33332 3466777888
Q ss_pred EEeccCCCcccCC-ccccccCCCcEEEcCCCCCCCCCCcccccccccccCCccchhhccCCCCCCCCCCCEEeccCCCCC
Q 007237 236 ELDISETAVRRPP-SSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLG 314 (611)
Q Consensus 236 ~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~ 314 (611)
.+.+..+ +..++ ..+..+.+|+.+.+.++... ...-..|.++.+|+.+.+..+ +.
T Consensus 267 ~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~----------------------~I~~~aF~~c~~L~~i~lp~~-l~ 322 (379)
T 4h09_A 267 TLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIE----------------------TLEPRVFMDCVKLSSVTLPTA-LK 322 (379)
T ss_dssp EEEECCC-CSEECTTTTTTCTTCCEEEECCTTCC----------------------EECTTTTTTCTTCCEEECCTT-CC
T ss_pred ccccccc-ceeccccccccccccccccccccccc----------------------eehhhhhcCCCCCCEEEcCcc-cc
Confidence 8877654 33333 34456788888887654311 001123778899999998654 32
Q ss_pred CCCCCCCCCCCCCCCEEEcC
Q 007237 315 EGAIPSDIGNLHSLNELYLS 334 (611)
Q Consensus 315 ~~~~~~~l~~l~~L~~L~L~ 334 (611)
..-..++.+|++|+.+.+.
T Consensus 323 -~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 323 -TIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp -EECTTTTTTCTTCCCCCCC
T ss_pred -EEHHHHhhCCCCCCEEEEC
Confidence 1123456777777776664
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.83 E-value=4.4e-06 Score=76.94 Aligned_cols=59 Identities=12% Similarity=0.046 Sum_probs=30.4
Q ss_pred CCCccEEEecCC-cCcC----cCCcccCCCCCCcEEEcCCCCcc-----ccCccccCCCCCcEEeccCC
Q 007237 65 VESLKILILSGC-LKLR----KFPHVVGSMECLQELLLDGTDIK-----ELPLSIEHLFGLVQLTLNDC 123 (611)
Q Consensus 65 l~~L~~L~Ls~~-~~~~----~lp~~l~~l~~L~~L~L~~~~i~-----~lp~~~~~l~~L~~L~L~~c 123 (611)
.++|++|+|++| .+.. .+.+.+...++|++|+|++|.+. .+...+...+.|++|+|++|
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N 103 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN 103 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC
Confidence 456666666666 4431 23334445556666666666554 23333444445555555554
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.69 E-value=1.1e-05 Score=74.32 Aligned_cols=40 Identities=10% Similarity=0.131 Sum_probs=21.8
Q ss_pred ccCCCCCCcEEEcCCC-Ccc-----ccCccccCCCCCcEEeccCCC
Q 007237 85 VVGSMECLQELLLDGT-DIK-----ELPLSIEHLFGLVQLTLNDCK 124 (611)
Q Consensus 85 ~l~~l~~L~~L~L~~~-~i~-----~lp~~~~~l~~L~~L~L~~c~ 124 (611)
.+...+.|++|+++++ .+. .+...+...+.|++|+|++|.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~ 76 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR 76 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC
Confidence 3455566666666666 554 233444445555555555543
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.66 E-value=6.2e-06 Score=74.37 Aligned_cols=83 Identities=13% Similarity=0.250 Sum_probs=49.3
Q ss_pred CCCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCC-CCc-CCcccccC----CCcCeeecccccccCc-----CCCCC
Q 007237 301 RSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNN-FVT-LPASINSL----LNLKELEMEDCKRLQF-----LPQLP 369 (611)
Q Consensus 301 ~~L~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~L~~n~-l~~-lp~~i~~l----~~L~~L~L~~c~~L~~-----lp~lp 369 (611)
..|+.||+++|.+++..+ ..+..|++|+.|+|++|. ++. --..+..+ ++|++|+|++|+.++. +..+
T Consensus 61 ~~L~~LDLs~~~Itd~GL-~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~- 138 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGF-DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHF- 138 (176)
T ss_dssp CCEEEEEEESCCCCGGGG-GGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGC-
T ss_pred ceEeEEeCcCCCccHHHH-HHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcC-
Confidence 356777777777654443 334667777777777774 431 11123332 3677777777765532 3333
Q ss_pred CCcceeeecCCCCccc
Q 007237 370 PNIIFVKVNGCSSLVT 385 (611)
Q Consensus 370 ~~L~~L~i~~C~sL~~ 385 (611)
++|+.|++++|+.++.
T Consensus 139 ~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 139 RNLKYLFLSDLPGVKE 154 (176)
T ss_dssp TTCCEEEEESCTTCCC
T ss_pred CCCCEEECCCCCCCCc
Confidence 6777777777777665
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.62 E-value=3.1e-05 Score=69.80 Aligned_cols=39 Identities=18% Similarity=0.261 Sum_probs=20.4
Q ss_pred CCCEEeccCCcCCccc-ccCccCCCCCCEEEecCCCCCcc
Q 007237 185 GLELLNLNDCKNFARV-PSSINGLKSLKTLNLSGCCKLEN 223 (611)
Q Consensus 185 ~L~~L~L~~~~~~~~l-p~~i~~l~~L~~L~l~~c~~l~~ 223 (611)
+|++|++++|..++.- -..+..+++|++|++++|..+..
T Consensus 115 ~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 115 SMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred CCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCCc
Confidence 4666666666543221 12244566666666666655443
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.54 E-value=4.7e-05 Score=73.88 Aligned_cols=78 Identities=23% Similarity=0.241 Sum_probs=41.9
Q ss_pred CCCCCcEEEcCCCCcccc---CccccCCCCCcEEeccCCCCCCCCcccCCCCC--CCCEEEecCCCCCcccc-------c
Q 007237 88 SMECLQELLLDGTDIKEL---PLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQ--CLRNLKLSGCSKLKKFP-------Q 155 (611)
Q Consensus 88 ~l~~L~~L~L~~~~i~~l---p~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~--~L~~L~L~~~~~l~~~p-------~ 155 (611)
++++|+.|+|++|.+..+ |..+..+++|+.|+|++|. ++.+.. +..+. +|+.|+|++|...+.+| .
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~~~-l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSERE-LDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCSGGG-GGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc-cCCchh-hhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 455555666665555533 2444556666666666533 333321 22233 67777777766554443 2
Q ss_pred ccCCCCCCCEEe
Q 007237 156 IVTTMEDLSELN 167 (611)
Q Consensus 156 ~~~~l~~L~~L~ 167 (611)
.+..+++|+.|+
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 456677777665
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.31 E-value=0.00014 Score=70.50 Aligned_cols=78 Identities=24% Similarity=0.362 Sum_probs=35.1
Q ss_pred CCCCCCEEeecCccCCCcC---cccCCCCCCCEEeccCCcCCcccccCccCCC--CCCEEEecCCCCCcccCc-------
Q 007237 159 TMEDLSELNLDGTSITEVP---SSIELLPGLELLNLNDCKNFARVPSSINGLK--SLKTLNLSGCCKLENVPD------- 226 (611)
Q Consensus 159 ~l~~L~~L~L~~~~i~~l~---~~l~~l~~L~~L~L~~~~~~~~lp~~i~~l~--~L~~L~l~~c~~l~~~p~------- 226 (611)
++++|+.|+|++|.++.++ ..+..+++|+.|+|++|...+. ..+..++ +|++|++++|+....+|.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 3444555555555444322 2233445555555555443322 1122222 555666665554443331
Q ss_pred ccCCCCCccEEe
Q 007237 227 TLGQVESLEELD 238 (611)
Q Consensus 227 ~l~~l~~L~~L~ 238 (611)
.+..+++|+.|+
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 244556666655
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.57 E-value=0.014 Score=53.47 Aligned_cols=83 Identities=17% Similarity=0.062 Sum_probs=44.7
Q ss_pred CCCccEEEecCC-cCc----CcCCcccCCCCCCcEEEcCCCCcc-----ccCccccCCCCCcEEeccCCCCCC----CCc
Q 007237 65 VESLKILILSGC-LKL----RKFPHVVGSMECLQELLLDGTDIK-----ELPLSIEHLFGLVQLTLNDCKNLS----SLP 130 (611)
Q Consensus 65 l~~L~~L~Ls~~-~~~----~~lp~~l~~l~~L~~L~L~~~~i~-----~lp~~~~~l~~L~~L~L~~c~~l~----~lp 130 (611)
-+.|++|+|+++ .+. ..+.+.+..-..|+.|+|++|.+. .+...+..-+.|++|+|++|..-. .+-
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 356777777764 332 123444555666777777777665 344445555666666666644221 122
Q ss_pred ccCCCCCCCCEEEecCC
Q 007237 131 VAISSFQCLRNLKLSGC 147 (611)
Q Consensus 131 ~~l~~l~~L~~L~L~~~ 147 (611)
..+..=+.|+.|+|+++
T Consensus 120 ~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHTTTTCCCSEEECCCC
T ss_pred HHHhhCCceeEEECCCC
Confidence 23333445666666543
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.42 E-value=0.017 Score=52.76 Aligned_cols=58 Identities=12% Similarity=0.190 Sum_probs=26.6
Q ss_pred CCCCCEEEecCCCCCc----ccccccCCCCCCCEEeecCccCCC-----cCcccCCCCCCCEEeccC
Q 007237 136 FQCLRNLKLSGCSKLK----KFPQIVTTMEDLSELNLDGTSITE-----VPSSIELLPGLELLNLND 193 (611)
Q Consensus 136 l~~L~~L~L~~~~~l~----~~p~~~~~l~~L~~L~L~~~~i~~-----l~~~l~~l~~L~~L~L~~ 193 (611)
=+.|+.|+|++|.... .+.+.+..-+.|++|+|+.|.|.. +...+..-+.|+.|+|++
T Consensus 69 N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 69 SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCC
T ss_pred CCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCC
Confidence 3455555555544331 223333344555555555555541 223333344455555554
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.38 E-value=0.089 Score=44.60 Aligned_cols=55 Identities=25% Similarity=0.390 Sum_probs=41.5
Q ss_pred CEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCCcCCcc-cccCCCcCeeeccccc
Q 007237 304 TKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPAS-INSLLNLKELEMEDCK 360 (611)
Q Consensus 304 ~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~-i~~l~~L~~L~L~~c~ 360 (611)
..++.++.+++...+|..+ .++|+.|+|++|+++.+|.. +..+++|+.|+|.+++
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 3677778777523577554 24789999999999988875 5778899999988876
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=91.54 E-value=0.35 Score=40.87 Aligned_cols=8 Identities=38% Similarity=0.576 Sum_probs=3.1
Q ss_pred CCEEEecC
Q 007237 139 LRNLKLSG 146 (611)
Q Consensus 139 L~~L~L~~ 146 (611)
|++|+|++
T Consensus 33 l~~L~Ls~ 40 (130)
T 3rfe_A 33 TTELVLTG 40 (130)
T ss_dssp CSEEECTT
T ss_pred CCEEECCC
Confidence 33333333
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=42.79 E-value=26 Score=27.58 Aligned_cols=40 Identities=18% Similarity=0.252 Sum_probs=21.5
Q ss_pred cccccCCCcccEEEccCCCCCCcCCCCCCCcccccccccc
Q 007237 6 FCFQQHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEG 45 (611)
Q Consensus 6 ~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~L~~L~L~~ 45 (611)
-..|..|.+|+.+.|..+-..+.-..|.+|.+|+.+.+.+
T Consensus 13 ~~aF~~c~~L~~i~iP~~v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 13 KSLFAGNTVIREITVQPNIGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp SCTTTTCTTCCCEEECTTSSCCCTTSSTTCTTCCCEEECC
T ss_pred HHHhcCCCCCcEEEcCCchheEcHHHHhccCCccEEEEcC
Confidence 3445556666666665543333334466666666666554
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=23.04 E-value=30 Score=27.14 Aligned_cols=29 Identities=7% Similarity=-0.005 Sum_probs=12.2
Q ss_pred CCCCcccccCcccccccCCcccccccchh
Q 007237 379 GCSSLVTLLGALKLCKSNGIVIECIDSLK 407 (611)
Q Consensus 379 ~C~sL~~l~~~~~~~~l~~l~~~~c~~L~ 407 (611)
+|.+|+++..+........-.|.+|.+|+
T Consensus 18 ~c~~L~~i~iP~~v~~Ig~~aF~~C~~L~ 46 (100)
T 2lz0_A 18 GNTVIREITVQPNIGLLYDGMFSGCTALE 46 (100)
T ss_dssp TCTTCCCEEECTTSSCCCTTSSTTCTTCC
T ss_pred CCCCCcEEEcCCchheEcHHHHhccCCcc
Confidence 44444444433333333333455555443
Done!