Query 007238
Match_columns 611
No_of_seqs 91 out of 93
Neff 4.3
Searched_HMMs 46136
Date Thu Mar 28 20:50:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007238.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007238hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03385 DUF288: Protein of un 100.0 3.7E-86 8.1E-91 685.0 17.6 247 347-595 1-312 (390)
2 PLN03180 reversibly glycosylat 100.0 6.1E-45 1.3E-49 376.4 19.2 312 101-449 7-343 (346)
3 PF03214 RGP: Reversibly glyco 100.0 2.8E-42 6E-47 356.0 19.7 317 103-449 6-344 (348)
4 cd03569 VHS_Hrs_Vps27p VHS dom 70.8 10 0.00022 36.1 5.9 68 385-455 75-142 (142)
5 cd02526 GT2_RfbF_like RfbF is 66.4 13 0.00029 35.6 5.8 85 110-202 2-90 (237)
6 cd04185 GT_2_like_b Subfamily 59.4 19 0.00042 33.8 5.4 87 109-202 1-94 (202)
7 cd03565 VHS_Tom1 VHS domain fa 55.3 29 0.00062 33.0 5.8 68 385-453 73-141 (141)
8 cd04192 GT_2_like_e Subfamily 51.1 38 0.00082 32.0 5.9 87 109-202 1-97 (229)
9 cd06435 CESA_NdvC_like NdvC_li 44.8 1.3E+02 0.0028 29.0 8.6 88 109-202 2-99 (236)
10 cd04186 GT_2_like_c Subfamily 43.9 51 0.0011 29.1 5.3 81 109-202 1-89 (166)
11 cd06421 CESA_CelA_like CESA_Ce 43.5 1.2E+02 0.0025 28.9 8.0 82 107-202 3-99 (234)
12 cd06423 CESA_like CESA_like is 36.7 85 0.0019 27.2 5.5 83 109-202 1-93 (180)
13 cd04195 GT2_AmsE_like GT2_AmsE 35.6 87 0.0019 29.2 5.7 54 321-379 148-201 (201)
14 cd03568 VHS_STAM VHS domain fa 32.9 94 0.002 29.8 5.5 67 385-454 71-137 (144)
15 cd06420 GT2_Chondriotin_Pol_N 31.1 1.3E+02 0.0029 27.4 6.0 85 109-202 1-94 (182)
16 TIGR03469 HonB hopene-associat 30.5 2.1E+02 0.0045 31.0 8.2 90 105-202 40-148 (384)
17 cd02165 NMNAT Nicotinamide/nic 30.2 79 0.0017 30.8 4.6 31 557-587 79-109 (192)
18 cd06434 GT2_HAS Hyaluronan syn 29.6 1.1E+02 0.0024 29.3 5.5 84 108-203 3-93 (235)
19 cd00761 Glyco_tranf_GTA_type G 27.2 3.2E+02 0.007 22.9 7.4 87 109-203 1-93 (156)
20 cd02522 GT_2_like_a GT_2_like_ 26.6 1.4E+02 0.0031 28.2 5.5 77 109-202 3-87 (221)
21 PRK10018 putative glycosyl tra 25.4 1.5E+02 0.0032 31.1 5.9 86 106-203 6-101 (279)
22 PTZ00260 dolichyl-phosphate be 23.9 3.9E+02 0.0083 28.6 8.7 39 104-143 69-121 (333)
23 cd06433 GT_2_WfgS_like WfgS an 23.2 2.2E+02 0.0048 25.9 6.0 85 109-205 2-93 (202)
24 PF00535 Glycos_transf_2: Glyc 22.5 3E+02 0.0064 23.9 6.4 82 109-203 2-94 (169)
25 TIGR01556 rhamnosyltran L-rham 22.4 80 0.0017 31.8 3.2 28 176-203 62-89 (281)
26 COG3141 DNA damage-inducible g 22.1 1.2E+02 0.0027 27.6 3.8 44 385-428 20-65 (97)
27 cd06913 beta3GnTL1_like Beta 1 21.5 1.6E+02 0.0034 28.3 4.8 88 109-203 1-100 (219)
28 cd04196 GT_2_like_d Subfamily 20.6 2.3E+02 0.0051 26.3 5.7 83 109-202 2-94 (214)
29 PRK08887 nicotinic acid mononu 20.2 1.5E+02 0.0033 28.9 4.5 60 522-587 50-113 (174)
30 cd04188 DPG_synthase DPG_synth 20.1 1.9E+02 0.0042 27.5 5.1 48 324-376 157-205 (211)
No 1
>PF03385 DUF288: Protein of unknown function, DUF288; InterPro: IPR005049 This is a protein family of unknown function.
Probab=100.00 E-value=3.7e-86 Score=684.97 Aligned_cols=247 Identities=36% Similarity=0.628 Sum_probs=231.5
Q ss_pred cchhhHHHHHHHHHHHHcCcEEEEcCCeeeeecCCCCC--CCchhhhHHHhhhHHHHHhccccCCcc---CHHHHHHHHH
Q 007238 347 MASDVLRGFWGQRLLWEIGGYVVVYPPTVHRYDKIEAY--PFSEEKDLHVNVGRLIKFLVSWRSNKH---RFFEKVLELS 421 (611)
Q Consensus 347 R~tDIWRsY~aQrlLw~~G~~v~F~pP~v~q~RN~H~y--DF~dE~~ly~~sg~lv~fL~~W~~~~~---~l~e~i~~L~ 421 (611)
||||||||||+|||||++|++|+|+||+|+|+||+|+| ||+||+|+|+++|+||+||++|+|+.+ ++++||++|+
T Consensus 1 RvTDIWRSY~aQRLLW~~G~~VsF~PpnV~Q~RNaHdYLkDF~DEk~LY~~sG~LV~FL~~W~~~~~n~~~L~~~Il~L~ 80 (390)
T PF03385_consen 1 RVTDIWRSYWAQRLLWLSGGTVSFVPPNVVQFRNAHDYLKDFKDEKDLYEDSGRLVEFLHEWRCSKGNSSTLFECILDLY 80 (390)
T ss_pred CchhHHHHHHHHHHHHHcCCeEEEcCCceeecccccccccchHHHHHHHHhHHHHHHHHHhcCCCCCchhhHHHHHHHHH
Confidence 89999999999999999999999999999999999999 999999999999999999999999754 6899999999
Q ss_pred HHHHHcCCcchhhHHHHHHHHHHHHhcCCCCCcccccccCCCC-CCCCCCCCC--------cc---cCCCCCcccccccc
Q 007238 422 HSMAEEGFWTERDVKFTAAWLQDLIAVGYQQPRLMSLELDRPR-ASIGHGDRK--------EF---VPRKLPSVHLGVEE 489 (611)
Q Consensus 422 ~~l~e~gfw~~~Dv~l~~aWL~DL~~vGy~~P~l~~~~~~~~~-~~~~~~~~~--------~f---~p~~~~~~~~~~~~ 489 (611)
++|+|+|||+++|++||+|||+||++|||+||+|++.++++|| +|.+|++|+ || +|++. +.+++++
T Consensus 81 ~~m~e~GfW~~~Dv~L~~AWL~DL~sVGY~fP~L~~~~~~dpYs~s~net~R~vNCRRm~leF~lvdp~~~--~~~~~~r 158 (390)
T PF03385_consen 81 VAMAEEGFWGEEDVKLMQAWLQDLKSVGYKFPRLRSEEYRDPYSPSTNETSRDVNCRRMHLEFELVDPKKE--ESQNIKR 158 (390)
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHHHHHHhhchhhhhcccCCCCCCCCCccccccccccccceeeccCCccc--ccHHHHH
Confidence 9999999999999999999999999999999999999999999 666777775 66 77775 4678999
Q ss_pred ccchhhcccchhhhhcccC----------------------------CEEEEEEcCccccccHHHHHHHhhccccEEEEe
Q 007238 490 TGTVSYEIGNLIRWRKNFG----------------------------NVVLIMFCSGPVERTALEWRLLYGRIFKTVIIL 541 (611)
Q Consensus 490 ~~~~~~~~g~~~~W~~~~g----------------------------n~VLIi~~n~P~~~~~~~~r~lY~~~F~~VIf~ 541 (611)
|.||++|||||++||+++| |+||||||||||+++||++||||||||++||||
T Consensus 159 a~qKlnyFGDl~~WC~etg~s~~~~~fpsp~QL~~~h~~~~vl~~~~~svlivvnn~pw~ygmgliqrlYqpyFa~viFC 238 (390)
T PF03385_consen 159 AEQKLNYFGDLVDWCNETGYSNLSKYFPSPEQLAEQHDESYVLQKNLNSVLIVVNNYPWKYGMGLIQRLYQPYFAMVIFC 238 (390)
T ss_pred HHHHHHhhchHHHHHhccCCccccccCCCHHHHHHHhhcceeecccCceeEEEecCCchhhhHHHHHHHhcccccEEEec
Confidence 9999999999999999999 899999999999999999999999999999999
Q ss_pred cC--------CCCCCce-----------eeecccchhhhhhHHHHh-hcCCCceEEEeecceeeecccccccCc
Q 007238 542 SE--------QKNEDLA-----------VEAGQLEQVYRHLPKIFS-RYTSAEGFLFLQDDTILNYWNLLQADK 595 (611)
Q Consensus 542 g~--------~~n~~~~-----------ve~~~g~~~Y~~L~k~~~-~~~~~~GYl~~~DD~ifN~Wn~~~~dk 595 (611)
|+ .+|.|+. +|+.+|+|+|||+.++.| +++|++|||+|+||+|||+||++++++
T Consensus 239 G~~yp~~~~~~dn~t~~~~pinyih~~~~e~~~g~~~y~c~~~v~em~~~nv~gy~~~~dd~ifn~w~~id~s~ 312 (390)
T PF03385_consen 239 GSWYPDQFSDQDNYTSTIHPINYIHMNPAEIHRGYFAYHCLTLVKEMGLQNVEGYFLMADDAIFNIWQRIDYSR 312 (390)
T ss_pred CCcCchhhcCCccCccccCCcceeecCHHHHhcchhhHHHHHHHHHhcCCCcceEEEecchhHhhhhhhcchhh
Confidence 95 4566542 688999999999777776 999999999999999999999999997
No 2
>PLN03180 reversibly glycosylated polypeptide; Provisional
Probab=100.00 E-value=6.1e-45 Score=376.39 Aligned_cols=312 Identities=15% Similarity=0.192 Sum_probs=253.2
Q ss_pred cccCCCeEEEEEeccCCcHHHHhhhc-cCCeEEEE--EeCCCCCCCCCCC--CceeecHHHHhhcCCccccccCCCCccc
Q 007238 101 SRFRSEKWIVVSVDRYPTDSLKKLVK-IKGWQVLA--IGNSRTPKNWNLK--GAIFLSLDMQANLGFRVLDFLPYDSYVR 175 (611)
Q Consensus 101 ~~~~~~~wIVvTTI~~Pt~~v~~La~-~~~W~lVV--VgD~KTP~dw~l~--~v~fLSve~Q~~L~f~~~~~LP~~SyaR 175 (611)
+...++..||||||+++ ++++..+. +.+..+++ .+|.++|.- ... +.++.+.++|..+==....+|||+|++|
T Consensus 7 ~~~~~evdIVi~TI~~~-~fL~~~r~~l~~~h~iiV~d~D~~~~~~-~~~G~d~~vy~r~d~~~~Lg~~~~~Ip~~~~a~ 84 (346)
T PLN03180 7 PLLKDELDIVIPTIRNL-DFLEMWRPFFQPYHLIIVQDGDPSKEIK-VPEGFDYELYNRNDINRILGPKASCISFKDSAC 84 (346)
T ss_pred CCCCCcceEEEeccCch-hHHHHHHHhcCcccEEEEecCCccccee-ccCCCceeecCHHHHHhhhcccccccccCcccc
Confidence 35678899999999996 88888885 55554544 456666542 233 4578899999755112377899999999
Q ss_pred hhHHHHHHHHcCCeEEEeecCCCcccCCC------CCCCccccccccccccceeeeecccCCCCceecc-CccCCCCCcc
Q 007238 176 KSCGYLFAIQHGAKKIFDADDRGDVIGDD------LGKHFDVELVGEGARQETILQYSHENPNRTIVNP-YVHFGQRSVW 248 (611)
Q Consensus 176 KNiGYLyAI~hGAe~IydtDDDN~p~~~~------l~~~Fd~~~~~~~~r~~~~lq~~~~~~~~~~~NP-Y~~fG~~~vW 248 (611)
||+|||++ ++++||.+||||.|.++. +..+|-. ++. +-....|||. |.-|-...++
T Consensus 85 R~fGyL~s---~~~yivsiDDD~~Pa~d~~g~~i~~~~qH~~----------NL~----~pstp~~fNtLYdp~r~g~~f 147 (346)
T PLN03180 85 RCFGYLVS---KKKYIFTIDDDCFVAKDPSGKLINALEQHIK----------NLL----SPSTPFFFNTLYDPYREGADF 147 (346)
T ss_pred hhhhheee---cceEEEEECCCCCCCCCCccccccHHHHHHH----------hcC----CCCCCceeecccccCccCCcc
Confidence 99999999 599999999999999862 2221111 111 1123459994 4445567899
Q ss_pred CCCCCCCCccCCCcccceeeeeCchhhhhhhhhcCCCCcchhhccccCCCCCCcccccCCCCCccccCCCceeecccccc
Q 007238 249 PRGLPLENVGEISHEEFYTEVFGGKQFIQQGISNGLPDVDSVFYFTRKPSLEAFDIRFDDRVPKVALPQGMMVPVNSFNT 328 (611)
Q Consensus 249 PRGFPLe~i~~~~~~~~~~~v~~~~~~IQQGL~~~dPDVDAIyRLt~~~~~~~ldv~F~~~ap~vaL~~GT~aP~NSQNT 328 (611)
|||||++.++. ..++|.||||.++||+||+++|..+++.+ -+|.. .-+++|.|||+|+|||||
T Consensus 148 vRGYPfS~R~g------------v~vaiS~GLWln~PD~DA~t~l~k~~e~~---t~yvd--avvtip~gt~~pv~~~Nl 210 (346)
T PLN03180 148 VRGYPFSLREG------------VPTAVSHGLWLNIPDYDAPTQLVKPLERN---TRYVD--AVMTIPKGTLFPMCGMNL 210 (346)
T ss_pred cCCCCccccCC------------cceEEecccccCCCcccchhhhccchhcc---ceecc--cEEeccCCCEeecccchh
Confidence 99999999962 14678899999999999999999988765 33443 357799999999999999
Q ss_pred ccchhch-hhccc-cccc---cccchhhHHHHHHHHHHHHcCcEEEEcCCeeeeecCCCCC--CCchhhhHHHhhhHHHH
Q 007238 329 IYQSSAF-WALML-PVSV---STMASDVLRGFWGQRLLWEIGGYVVVYPPTVHRYDKIEAY--PFSEEKDLHVNVGRLIK 401 (611)
Q Consensus 329 lfh~~AF-wgL~L-P~tv---s~R~tDIWRsY~aQrlLw~~G~~v~F~pP~v~q~RN~H~y--DF~dE~~ly~~sg~lv~ 401 (611)
+|+|+++ |+||. ||.- .+|+.|||.|+++|+|...+|+.|.+|-|.|.|.| +|+. |++.|..+....+++++
T Consensus 211 AF~ReligPA~y~g~m~~g~~i~R~dDiWsG~c~K~i~dhLG~gVktG~Pyv~h~k-~~n~~~dL~~E~~Gi~l~E~i~~ 289 (346)
T PLN03180 211 AFDRELIGPAMYFGLMGDGQPIGRYDDMWAGWCAKVICDHLGLGVKTGLPYIWHSK-ASNPFVNLKKEYKGIFWQEEIIP 289 (346)
T ss_pred hhhhhhcchhheecccCCCCcccchhhhHHHHHHHHHHHHhCcceecCCceEecCC-cccHHHHHHhhccCeechHHHHH
Confidence 9999999 99885 7666 89999999999999999999999999999999999 9997 99999999999999999
Q ss_pred Hhcccc--CCccCHHHHHHHHHHHHHHc--CC--cchhhHHHHHHHHHHHHhcC
Q 007238 402 FLVSWR--SNKHRFFEKVLELSHSMAEE--GF--WTERDVKFTAAWLQDLIAVG 449 (611)
Q Consensus 402 fL~~W~--~~~~~l~e~i~~L~~~l~e~--gf--w~~~Dv~l~~aWL~DL~~vG 449 (611)
|+++-+ .++.++.+|+++|+..+.+. .+ .-.+-++.|..|++-++++|
T Consensus 290 ff~~~~l~~~a~t~~~cy~ela~~vk~~l~~~d~~f~~~a~~M~~Wi~~w~~l~ 343 (346)
T PLN03180 290 FFQSVRLPKEAVTVEDCYIELAKQVKEKLGKVDPYFTKLADAMVTWIEAWKELN 343 (346)
T ss_pred HHHhccCCcccCcHHHHHHHHHHHHHhhccccCHHHHHHHHHHHHHHHHHHHhC
Confidence 999998 46779999999999999886 33 33566889999999999987
No 3
>PF03214 RGP: Reversibly glycosylated polypeptide; InterPro: IPR004901 Alpha-1,4-glucan-protein synthase catalyses the reaction: protein + UDP-D-glucose = alpha-D-glucosyl-protein + UDP The enzyme has a possible role in the synthesis of cell wall polysaccharides in plants []. It is found associated with the cell wall, with the highest concentrations in the plasmodesmata. It is also located in the Golgi apparatus.; GO: 0008466 glycogenin glucosyltransferase activity, 0016758 transferase activity, transferring hexosyl groups, 0007047 cellular cell wall organization, 0030244 cellulose biosynthetic process, 0005618 cell wall, 0030054 cell junction
Probab=100.00 E-value=2.8e-42 Score=355.99 Aligned_cols=317 Identities=18% Similarity=0.267 Sum_probs=248.3
Q ss_pred cCCCeEEEEEecc-CCcHHHHhhhc-cCCeEEEEEeCCCCCCCCCCCCceeecHHHHhhc--CCccccccCCCCccchhH
Q 007238 103 FRSEKWIVVSVDR-YPTDSLKKLVK-IKGWQVLAIGNSRTPKNWNLKGAIFLSLDMQANL--GFRVLDFLPYDSYVRKSC 178 (611)
Q Consensus 103 ~~~~~wIVvTTI~-~Pt~~v~~La~-~~~W~lVVVgD~KTP~dw~l~~v~fLSve~Q~~L--~f~~~~~LP~~SyaRKNi 178 (611)
..++--||+.+|. +=|+++..-.. +.+.+|+||-|..-+..-..|.--=+.+..|..+ ..+...++||++++|||+
T Consensus 6 ~~~~~divi~~~~~~l~~~~~~wr~~~~~~hliiv~d~~~~~~~~~p~g~~~~~y~~~di~~~lg~~~~i~~~~~a~R~f 85 (348)
T PF03214_consen 6 LDDEVDIVIPALRPNLTDFLEEWRPFFSPYHLIIVQDPDPNEEIKVPEGFDYEVYNRNDIERVLGAKTLIPFKGDACRNF 85 (348)
T ss_pred ccCcccEEeecccccHHHHHHHHHHhhcceeEEEEeCCCccccccCCcccceeeecHhhHHhhcCCcccccccccchhhh
Confidence 4567889999999 55788888887 6899999999977666555542222233334433 334458999999999999
Q ss_pred HHHHHHHcCCeEEEeecCCCcccCCCCCCCccccccccccccce-eeeecccCCCCceec-cCccCCCCCccCCCCCCCC
Q 007238 179 GYLFAIQHGAKKIFDADDRGDVIGDDLGKHFDVELVGEGARQET-ILQYSHENPNRTIVN-PYVHFGQRSVWPRGLPLEN 256 (611)
Q Consensus 179 GYLyAI~hGAe~IydtDDDN~p~~~~l~~~Fd~~~~~~~~r~~~-~lq~~~~~~~~~~~N-PY~~fG~~~vWPRGFPLe~ 256 (611)
|||.|- .++||.+||||.|.+++++.+++.. .++. .+. +-....||| -|..+.....+|||||++.
T Consensus 86 GyL~s~---~~yivsiDDD~~P~~D~~g~~~~~v------~qh~~~~~---~~st~~~fNtLyd~~~e~~~f~RGyPfS~ 153 (348)
T PF03214_consen 86 GYLVSK---KDYIVSIDDDCLPAKDDFGTHIDAV------AQHVENLS---TPSTPFFFNTLYDPYREGADFPRGYPFSL 153 (348)
T ss_pred Hhhhcc---cceEEEEccccccccCCccceehhh------hccceeee---ccCchhhhhhhcccccccCcccCCCCccc
Confidence 999884 4999999999999998877777642 1111 111 112345888 5666777789999999997
Q ss_pred ccCCCcccceeeeeCchhhhhhhhhcCCCCcchhhccccCCCCCCcccccCCCCCccccCCCceeeccccccccchhchh
Q 007238 257 VGEISHEEFYTEVFGGKQFIQQGISNGLPDVDSVFYFTRKPSLEAFDIRFDDRVPKVALPQGMMVPVNSFNTIYQSSAFW 336 (611)
Q Consensus 257 i~~~~~~~~~~~v~~~~~~IQQGL~~~dPDVDAIyRLt~~~~~~~ldv~F~~~ap~vaL~~GT~aP~NSQNTlfh~~AFw 336 (611)
++.. .++|.||||.++|||||+++|..+.+.. -+|.. +-+++|.|||+|+|||||+|+|++.+
T Consensus 154 Regv------------~~~~s~GLWln~PD~DA~t~l~~~~~r~---~~~~d--~~~~~p~gt~~pv~s~NlAf~Relip 216 (348)
T PF03214_consen 154 REGV------------DTAASAGLWLNVPDLDAPTQLVKPTERN---TRYVD--AVLTIPRGTYLPVCSMNLAFDRELIP 216 (348)
T ss_pred ccCC------------ceeeecccccCCcccchhhhhccchhcc---ccccC--ceEEecCCCEeecccchhhhhhhhcC
Confidence 6321 2468899999999999999998766543 34543 56789999999999999999999997
Q ss_pred -hccccccc-------cccchhhHHHHHHHHHHHHcCcEEEEcCCeeeeecCCCCC-CCchhhhHHHhhhHHHHHhcccc
Q 007238 337 -ALMLPVSV-------STMASDVLRGFWGQRLLWEIGGYVVVYPPTVHRYDKIEAY-PFSEEKDLHVNVGRLIKFLVSWR 407 (611)
Q Consensus 337 -gL~LP~tv-------s~R~tDIWRsY~aQrlLw~~G~~v~F~pP~v~q~RN~H~y-DF~dE~~ly~~sg~lv~fL~~W~ 407 (611)
.|++|+-. -.|+.|||.||++|+|...+|+.|.+|-|.|+|.++.+.+ |++.|.++.+..+.|++|+++-+
T Consensus 217 ~~~~~~~~~~~~~~~R~d~~gDIWsG~f~k~~~d~Lg~~V~~G~P~v~H~~a~~~~~dL~~E~~Gi~l~E~i~~f~q~v~ 296 (348)
T PF03214_consen 217 PAYYFPMMGNGWGIGRFDRFGDIWSGYFLKVICDHLGHGVKTGLPYVWHNKAHNAFDDLKKEVPGIELNEDILPFFQSVK 296 (348)
T ss_pred hheecccccCCCcccccccchhHHHHHHHHHHHHHcCCccccCCceEEecCCCchHHHHHhhccchhhHHHHHHHHhccC
Confidence 56677533 3455599999999999999999999999999999654334 99999999999999999999998
Q ss_pred CCcc--CHHHHHHHHHHHHHHcCCcc-----hhhHHHHHHHHHHHHhcC
Q 007238 408 SNKH--RFFEKVLELSHSMAEEGFWT-----ERDVKFTAAWLQDLIAVG 449 (611)
Q Consensus 408 ~~~~--~l~e~i~~L~~~l~e~gfw~-----~~Dv~l~~aWL~DL~~vG 449 (611)
-++. ++.+|+++|+.+..+. +.. .+-++.|++|++.++++|
T Consensus 297 Ls~~A~t~~dcy~ELA~~Vkek-Lg~~dp~F~kvAdaMv~WI~AW~~ln 344 (348)
T PF03214_consen 297 LSKTAVTVEDCYRELAKQVKEK-LGSVDPYFTKVADAMVAWIKAWKELN 344 (348)
T ss_pred CCcccccHHHHHHHHHHHHHHh-ccCcChHHHHHHHHHHHHHHHHHHhC
Confidence 7765 7899999998765554 433 457899999999999998
No 4
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=70.85 E-value=10 Score=36.07 Aligned_cols=68 Identities=24% Similarity=0.309 Sum_probs=50.9
Q ss_pred CCchhhhHHHhhhHHHHHhccccCCccCHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHhcCCCCCcc
Q 007238 385 PFSEEKDLHVNVGRLIKFLVSWRSNKHRFFEKVLELSHSMAEEGFWTERDVKFTAAWLQDLIAVGYQQPRL 455 (611)
Q Consensus 385 DF~dE~~ly~~sg~lv~fL~~W~~~~~~l~e~i~~L~~~l~e~gfw~~~Dv~l~~aWL~DL~~vGy~~P~l 455 (611)
.|..|+---+-..+|++.+.. ......-+++++|....++ .|-+..++..+..=-+-|++-||+||.+
T Consensus 75 ~fh~evas~~fl~~l~~l~~~--~~~~~Vk~kil~li~~W~~-~f~~~~~l~~i~~~y~~L~~~G~~FP~~ 142 (142)
T cd03569 75 HFHDEVASREFMDELKDLIKT--TKNEEVRQKILELIQAWAL-AFRNKPQLKYVVDTYQILKAEGHKFPEL 142 (142)
T ss_pred HHHHHHhhHHHHHHHHHHHcc--cCCHHHHHHHHHHHHHHHH-HhCCCcccHHHHHHHHHHHHcCCCCCCC
Confidence 366666665666677776665 2334567888888888774 6667778888999999999999999974
No 5
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=66.36 E-value=13 Score=35.61 Aligned_cols=85 Identities=15% Similarity=0.044 Sum_probs=47.1
Q ss_pred EEEeccCCcHHHHhhh-cc--CCeEEEEEeCCCCCCCCCCCCceeecHHHHhhcCCccccccCCCCccc-hhHHHHHHHH
Q 007238 110 VVSVDRYPTDSLKKLV-KI--KGWQVLAIGNSRTPKNWNLKGAIFLSLDMQANLGFRVLDFLPYDSYVR-KSCGYLFAIQ 185 (611)
Q Consensus 110 VvTTI~~Pt~~v~~La-~~--~~W~lVVVgD~KTP~dw~l~~v~fLSve~Q~~L~f~~~~~LP~~SyaR-KNiGYLyAI~ 185 (611)
|+++-+..-+.+.+.. ++ ..+.+|||-|..++..-. ..++...+..+...-.-..+++ .|.|.-.|-.
T Consensus 2 vI~~yn~~~~~l~~~l~sl~~q~~~iivvDn~s~~~~~~--------~~~~~~~~i~~i~~~~n~G~~~a~N~g~~~a~~ 73 (237)
T cd02526 2 VVVTYNPDLSKLKELLAALAEQVDKVVVVDNSSGNDIEL--------RLRLNSEKIELIHLGENLGIAKALNIGIKAALE 73 (237)
T ss_pred EEEEecCCHHHHHHHHHHHhccCCEEEEEeCCCCccHHH--------HhhccCCcEEEEECCCceehHHhhhHHHHHHHh
Confidence 4555665523333333 32 268999998865543200 0111112222222211222333 7888888877
Q ss_pred cCCeEEEeecCCCcccC
Q 007238 186 HGAKKIFDADDRGDVIG 202 (611)
Q Consensus 186 hGAe~IydtDDDN~p~~ 202 (611)
+|+++|+-+|+|..+..
T Consensus 74 ~~~d~v~~lD~D~~~~~ 90 (237)
T cd02526 74 NGADYVLLFDQDSVPPP 90 (237)
T ss_pred CCCCEEEEECCCCCcCH
Confidence 78999999999998754
No 6
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=59.37 E-value=19 Score=33.79 Aligned_cols=87 Identities=20% Similarity=0.027 Sum_probs=48.6
Q ss_pred EEEEeccCCcHHHHh-hhc-----cCCeEEEEEeCCCCCCCCCCCCceeecHHHHhhcCCccccccCCCCcc-chhHHHH
Q 007238 109 IVVSVDRYPTDSLKK-LVK-----IKGWQVLAIGNSRTPKNWNLKGAIFLSLDMQANLGFRVLDFLPYDSYV-RKSCGYL 181 (611)
Q Consensus 109 IVvTTI~~Pt~~v~~-La~-----~~~W~lVVVgD~KTP~dw~l~~v~fLSve~Q~~L~f~~~~~LP~~Sya-RKNiGYL 181 (611)
||++|-+.+ +.+++ |.+ .+.+.++||-|..|+.... .+. +.++..++.+...-.-..++ ..|.|.-
T Consensus 1 viI~~~n~~-~~l~~~l~sl~~q~~~~~eiiivD~~s~d~t~~-----~~~-~~~~~~~i~~~~~~~n~g~~~~~n~~~~ 73 (202)
T cd04185 1 AVVVTYNRL-DLLKECLDALLAQTRPPDHIIVIDNASTDGTAE-----WLT-SLGDLDNIVYLRLPENLGGAGGFYEGVR 73 (202)
T ss_pred CEEEeeCCH-HHHHHHHHHHHhccCCCceEEEEECCCCcchHH-----HHH-HhcCCCceEEEECccccchhhHHHHHHH
Confidence 466666666 43443 232 3468898888876653211 000 11111122222222222333 3788888
Q ss_pred HHHHcCCeEEEeecCCCcccC
Q 007238 182 FAIQHGAKKIFDADDRGDVIG 202 (611)
Q Consensus 182 yAI~hGAe~IydtDDDN~p~~ 202 (611)
.|++.++++|.-+|||..+..
T Consensus 74 ~a~~~~~d~v~~ld~D~~~~~ 94 (202)
T cd04185 74 RAYELGYDWIWLMDDDAIPDP 94 (202)
T ss_pred HHhccCCCEEEEeCCCCCcCh
Confidence 888778999999999997654
No 7
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=55.33 E-value=29 Score=33.03 Aligned_cols=68 Identities=21% Similarity=0.199 Sum_probs=44.2
Q ss_pred CCchhhhHHHhhhH-HHHHhccccCCccCHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHhcCCCCC
Q 007238 385 PFSEEKDLHVNVGR-LIKFLVSWRSNKHRFFEKVLELSHSMAEEGFWTERDVKFTAAWLQDLIAVGYQQP 453 (611)
Q Consensus 385 DF~dE~~ly~~sg~-lv~fL~~W~~~~~~l~e~i~~L~~~l~e~gfw~~~Dv~l~~aWL~DL~~vGy~~P 453 (611)
.|..|+---+-... |++.+..=.......-+++++|....++ .|=++.++..+..=-+.|++-||+||
T Consensus 73 ~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~-~f~~~~~l~~i~~~y~~L~~~G~~FP 141 (141)
T cd03565 73 RFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWAD-AFRGSPDLTGVVEVYEELKKKGIEFP 141 (141)
T ss_pred HHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHH-HhCCCccchHHHHHHHHHHHcCCCCC
Confidence 35556555555555 5666642211223456777777777775 45455677788888888999999998
No 8
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=51.10 E-value=38 Score=31.99 Aligned_cols=87 Identities=17% Similarity=0.162 Sum_probs=46.1
Q ss_pred EEEEeccCCcH---HHHhhhc--cCC--eEEEEEeCCCCCCCCCCCCceeecHHHHhhcCCccccccCCCC-ccc-hhHH
Q 007238 109 IVVSVDRYPTD---SLKKLVK--IKG--WQVLAIGNSRTPKNWNLKGAIFLSLDMQANLGFRVLDFLPYDS-YVR-KSCG 179 (611)
Q Consensus 109 IVvTTI~~Pt~---~v~~La~--~~~--W~lVVVgD~KTP~dw~l~~v~fLSve~Q~~L~f~~~~~LP~~S-yaR-KNiG 179 (611)
|||++-+.+.. .++.|++ .+. ..++||=|..++.. ...+. .+......-...++... .++ |..+
T Consensus 1 viip~~n~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t-----~~~~~--~~~~~~~~~v~~~~~~~~~~~g~~~a 73 (229)
T cd04192 1 VVIAARNEAENLPRLLQSLSALDYPKEKFEVILVDDHSTDGT-----VQILE--FAAAKPNFQLKILNNSRVSISGKKNA 73 (229)
T ss_pred CEEEecCcHHHHHHHHHHHHhCCCCCCceEEEEEcCCCCcCh-----HHHHH--HHHhCCCcceEEeeccCcccchhHHH
Confidence 57777887733 3334432 344 89999988655432 22222 12222221223343332 111 2233
Q ss_pred HHHHHH-cCCeEEEeecCCCcccC
Q 007238 180 YLFAIQ-HGAKKIFDADDRGDVIG 202 (611)
Q Consensus 180 YLyAI~-hGAe~IydtDDDN~p~~ 202 (611)
.-+++. .++++|.-+|+|..+..
T Consensus 74 ~n~g~~~~~~d~i~~~D~D~~~~~ 97 (229)
T cd04192 74 LTTAIKAAKGDWIVTTDADCVVPS 97 (229)
T ss_pred HHHHHHHhcCCEEEEECCCcccCH
Confidence 444444 37899999999998754
No 9
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=44.84 E-value=1.3e+02 Score=29.00 Aligned_cols=88 Identities=20% Similarity=0.160 Sum_probs=45.7
Q ss_pred EEEEeccCCcHHHHh----hhc--cCCeEEEEEeCCCCCCCCCCCCceeecHHHHhhcC--CccccccCCCCc--cchhH
Q 007238 109 IVVSVDRYPTDSLKK----LVK--IKGWQVLAIGNSRTPKNWNLKGAIFLSLDMQANLG--FRVLDFLPYDSY--VRKSC 178 (611)
Q Consensus 109 IVvTTI~~Pt~~v~~----La~--~~~W~lVVVgD~KTP~dw~l~~v~fLSve~Q~~L~--f~~~~~LP~~Sy--aRKNi 178 (611)
||+++-|.+.+.+++ |.+ .+.|.+|||-|.+|..... ..+ .+.+++.+ +++...-+-... +-.|.
T Consensus 2 iiip~~ne~~~~l~~~l~sl~~q~~~~~eiiVvdd~s~D~t~~----~~i-~~~~~~~~~~i~~i~~~~~~G~~~~a~n~ 76 (236)
T cd06435 2 IHVPCYEEPPEMVKETLDSLAALDYPNFEVIVIDNNTKDEALW----KPV-EAHCAQLGERFRFFHVEPLPGAKAGALNY 76 (236)
T ss_pred eeEeeCCCcHHHHHHHHHHHHhCCCCCcEEEEEeCCCCchhHH----HHH-HHHHHHhCCcEEEEEcCCCCCCchHHHHH
Confidence 788888876454544 333 3579999999877654310 000 12222222 222221111111 11344
Q ss_pred HHHHHHHcCCeEEEeecCCCcccC
Q 007238 179 GYLFAIQHGAKKIFDADDRGDVIG 202 (611)
Q Consensus 179 GYLyAI~hGAe~IydtDDDN~p~~ 202 (611)
|.-.|. .++++|.-+|+|..+..
T Consensus 77 g~~~a~-~~~d~i~~lD~D~~~~~ 99 (236)
T cd06435 77 ALERTA-PDAEIIAVIDADYQVEP 99 (236)
T ss_pred HHHhcC-CCCCEEEEEcCCCCcCH
Confidence 444432 13699999999987654
No 10
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=43.91 E-value=51 Score=29.12 Aligned_cols=81 Identities=14% Similarity=0.070 Sum_probs=43.5
Q ss_pred EEEEeccCCcHHHHhhh----cc--CCeEEEEEeCCCCCCCCCCCCceeecHHHHhhcC-CccccccCCCCccc-hhHHH
Q 007238 109 IVVSVDRYPTDSLKKLV----KI--KGWQVLAIGNSRTPKNWNLKGAIFLSLDMQANLG-FRVLDFLPYDSYVR-KSCGY 180 (611)
Q Consensus 109 IVvTTI~~Pt~~v~~La----~~--~~W~lVVVgD~KTP~dw~l~~v~fLSve~Q~~L~-f~~~~~LP~~SyaR-KNiGY 180 (611)
||+++-+.+ +.++++. +. ..+.++||-|..|+..-.. - ++... ..+...-+-.+.++ +|.|.
T Consensus 1 vii~~~~~~-~~l~~~l~sl~~~~~~~~~iiivdd~s~~~~~~~--------~-~~~~~~~~~~~~~~~~g~~~a~n~~~ 70 (166)
T cd04186 1 IIIVNYNSL-EYLKACLDSLLAQTYPDFEVIVVDNASTDGSVEL--------L-RELFPEVRLIRNGENLGFGAGNNQGI 70 (166)
T ss_pred CEEEecCCH-HHHHHHHHHHHhccCCCeEEEEEECCCCchHHHH--------H-HHhCCCeEEEecCCCcChHHHhhHHH
Confidence 467767775 4443333 32 5799999999877653110 0 00001 11111101111222 45565
Q ss_pred HHHHHcCCeEEEeecCCCcccC
Q 007238 181 LFAIQHGAKKIFDADDRGDVIG 202 (611)
Q Consensus 181 LyAI~hGAe~IydtDDDN~p~~ 202 (611)
-.| ++++|.-+|||..+..
T Consensus 71 ~~~---~~~~i~~~D~D~~~~~ 89 (166)
T cd04186 71 REA---KGDYVLLLNPDTVVEP 89 (166)
T ss_pred hhC---CCCEEEEECCCcEECc
Confidence 555 7899999999998654
No 11
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=43.45 E-value=1.2e+02 Score=28.94 Aligned_cols=82 Identities=15% Similarity=0.152 Sum_probs=44.5
Q ss_pred eEEEEEeccCCcHHHHh----hhc--cCC--eEEEEEeCCCCCCCCCCCCceeecHHHHhhcC----CccccccCCC-Cc
Q 007238 107 KWIVVSVDRYPTDSLKK----LVK--IKG--WQVLAIGNSRTPKNWNLKGAIFLSLDMQANLG----FRVLDFLPYD-SY 173 (611)
Q Consensus 107 ~wIVvTTI~~Pt~~v~~----La~--~~~--W~lVVVgD~KTP~dw~l~~v~fLSve~Q~~L~----f~~~~~LP~~-Sy 173 (611)
.-||+++-+.+.+.+++ +.+ .+. |.++||-|..|+.. .+--++++ ..+... +-+ .+
T Consensus 3 vsviip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t----------~~~~~~~~~~~~~~~~~~-~~~~~~ 71 (234)
T cd06421 3 VDVFIPTYNEPLEIVRKTLRAALAIDYPHDKLRVYVLDDGRRPEL----------RALAAELGVEYGYRYLTR-PDNRHA 71 (234)
T ss_pred eEEEEecCCCcHHHHHHHHHHHHhcCCCcccEEEEEEcCCCchhH----------HHHHHHhhcccCceEEEe-CCCCCC
Confidence 46888888876454443 332 355 99999988765542 11111221 122111 111 11
Q ss_pred cc--hhHHHHHHHHcCCeEEEeecCCCcccC
Q 007238 174 VR--KSCGYLFAIQHGAKKIFDADDRGDVIG 202 (611)
Q Consensus 174 aR--KNiGYLyAI~hGAe~IydtDDDN~p~~ 202 (611)
.. .|.|.-. .+.++|+-+|+|..+..
T Consensus 72 ~~~~~n~~~~~---a~~d~i~~lD~D~~~~~ 99 (234)
T cd06421 72 KAGNLNNALAH---TTGDFVAILDADHVPTP 99 (234)
T ss_pred cHHHHHHHHHh---CCCCEEEEEccccCcCc
Confidence 12 2333332 37899999999998754
No 12
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=36.66 E-value=85 Score=27.18 Aligned_cols=83 Identities=14% Similarity=0.135 Sum_probs=43.2
Q ss_pred EEEEeccCCcHHHHh----hhc--cCCeEEEEEeCCCCCCCCCCCCceeecHHHHhhcCCcccccc---CCCC-ccchhH
Q 007238 109 IVVSVDRYPTDSLKK----LVK--IKGWQVLAIGNSRTPKNWNLKGAIFLSLDMQANLGFRVLDFL---PYDS-YVRKSC 178 (611)
Q Consensus 109 IVvTTI~~Pt~~v~~----La~--~~~W~lVVVgD~KTP~dw~l~~v~fLSve~Q~~L~f~~~~~L---P~~S-yaRKNi 178 (611)
||+++-+.+ +.+.+ +.+ ...+.++||-|..++..-.. + .............+ +-.. ..-.|.
T Consensus 1 Viip~~n~~-~~l~~~l~sl~~q~~~~~~iivvdd~s~d~t~~~-----~--~~~~~~~~~~~~~~~~~~~~g~~~~~n~ 72 (180)
T cd06423 1 IIVPAYNEE-AVIERTIESLLALDYPKLEVIVVDDGSTDDTLEI-----L--EELAALYIRRVLVVRDKENGGKAGALNA 72 (180)
T ss_pred CeecccChH-HHHHHHHHHHHhCCCCceEEEEEeCCCccchHHH-----H--HHHhccccceEEEEEecccCCchHHHHH
Confidence 567777777 44433 332 25899999988766443110 0 00001000111111 1111 112466
Q ss_pred HHHHHHHcCCeEEEeecCCCcccC
Q 007238 179 GYLFAIQHGAKKIFDADDRGDVIG 202 (611)
Q Consensus 179 GYLyAI~hGAe~IydtDDDN~p~~ 202 (611)
|.-+| .+++|.-+|+|..+..
T Consensus 73 ~~~~~---~~~~i~~~D~D~~~~~ 93 (180)
T cd06423 73 GLRHA---KGDIVVVLDADTILEP 93 (180)
T ss_pred HHHhc---CCCEEEEECCCCCcCh
Confidence 65554 7899999999998754
No 13
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=35.60 E-value=87 Score=29.23 Aligned_cols=54 Identities=13% Similarity=0.087 Sum_probs=29.5
Q ss_pred eeccccccccchhchhhccccccccccchhhHHHHHHHHHHHHcCcEEEEcCCeeeeec
Q 007238 321 VPVNSFNTIYQSSAFWALMLPVSVSTMASDVLRGFWGQRLLWEIGGYVVVYPPTVHRYD 379 (611)
Q Consensus 321 aP~NSQNTlfh~~AFwgL~LP~tvs~R~tDIWRsY~aQrlLw~~G~~v~F~pP~v~q~R 379 (611)
+|++..+.++.++++..+-.--.. ....|. +.-.-+...|+.+.+.|-...+.|
T Consensus 148 ~~~~~~~~~~rr~~~~~~g~~~~~-~~~eD~----~~~~r~~~~g~~~~~~~~~~~~yR 201 (201)
T cd04195 148 SPFNHPTVMFRKSKVLAVGGYQDL-PLVEDY----ALWARMLANGARFANLPEILVKAR 201 (201)
T ss_pred CCCCChHHhhhHHHHHHcCCcCCC-CCchHH----HHHHHHHHcCCceecccHHHhhcC
Confidence 455666778888888743211111 334453 333333456888887775555444
No 14
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=32.94 E-value=94 Score=29.77 Aligned_cols=67 Identities=16% Similarity=0.145 Sum_probs=49.4
Q ss_pred CCchhhhHHHhhhHHHHHhccccCCccCHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHhcCCCCCc
Q 007238 385 PFSEEKDLHVNVGRLIKFLVSWRSNKHRFFEKVLELSHSMAEEGFWTERDVKFTAAWLQDLIAVGYQQPR 454 (611)
Q Consensus 385 DF~dE~~ly~~sg~lv~fL~~W~~~~~~l~e~i~~L~~~l~e~gfw~~~Dv~l~~aWL~DL~~vGy~~P~ 454 (611)
.|..|+---+-.+.|++.+..= .....-++|++|....++ .|-...++.++..=-+.|++-||.||.
T Consensus 71 ~fh~evask~Fl~eL~kl~~~~--~~~~Vk~kil~li~~W~~-~f~~~~~l~~i~~~y~~L~~~G~~f~~ 137 (144)
T cd03568 71 RFHQEVASRDFTQELKKLINDR--VHPTVKEKLREVVKQWAD-EFKNDPSLSLMSDLYKKLKNEGPDLVT 137 (144)
T ss_pred HHHHHHhhHHHHHHHHHHhccc--CCHHHHHHHHHHHHHHHH-HhCCCcccHHHHHHHHHHHHcCCCCCC
Confidence 3666766655566666666552 444677888888888763 455778888899999999999999993
No 15
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=31.12 E-value=1.3e+02 Score=27.44 Aligned_cols=85 Identities=9% Similarity=0.112 Sum_probs=42.4
Q ss_pred EEEEeccCCcH---HHHhhhc--cCCeEEEEEeCCCCCCCCCCCCceeecHHHHhhcCCccccccCCCCc----cchhHH
Q 007238 109 IVVSVDRYPTD---SLKKLVK--IKGWQVLAIGNSRTPKNWNLKGAIFLSLDMQANLGFRVLDFLPYDSY----VRKSCG 179 (611)
Q Consensus 109 IVvTTI~~Pt~---~v~~La~--~~~W~lVVVgD~KTP~dw~l~~v~fLSve~Q~~L~f~~~~~LP~~Sy----aRKNiG 179 (611)
||+++-+.+.. .++.+.+ ...+.++||-|..|... ...+ .+.++..++++....--+.- +-.|.|
T Consensus 1 ivip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~t-----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~n~g 74 (182)
T cd06420 1 LIITTYNRPEALELVLKSVLNQSILPFEVIIADDGSTEET-----KELI-EEFKSQFPIPIKHVWQEDEGFRKAKIRNKA 74 (182)
T ss_pred CEEeecCChHHHHHHHHHHHhccCCCCEEEEEeCCCchhH-----HHHH-HHHHhhcCCceEEEEcCCcchhHHHHHHHH
Confidence 56776776633 2233332 36799999988654431 0011 11122223322222111111 113444
Q ss_pred HHHHHHcCCeEEEeecCCCcccC
Q 007238 180 YLFAIQHGAKKIFDADDRGDVIG 202 (611)
Q Consensus 180 YLyAI~hGAe~IydtDDDN~p~~ 202 (611)
.=. ..+++|.-+|+|..+..
T Consensus 75 ~~~---a~g~~i~~lD~D~~~~~ 94 (182)
T cd06420 75 IAA---AKGDYLIFIDGDCIPHP 94 (182)
T ss_pred HHH---hcCCEEEEEcCCcccCH
Confidence 433 45799999999998744
No 16
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=30.49 E-value=2.1e+02 Score=30.98 Aligned_cols=90 Identities=18% Similarity=0.137 Sum_probs=48.0
Q ss_pred CCeEEEEEeccCCcHHHHh----hhc--cC-CeEEEEEeCCCCCCCCCCCCceeecHHHHhhcC----Cccccc--cCCC
Q 007238 105 SEKWIVVSVDRYPTDSLKK----LVK--IK-GWQVLAIGNSRTPKNWNLKGAIFLSLDMQANLG----FRVLDF--LPYD 171 (611)
Q Consensus 105 ~~~wIVvTTI~~Pt~~v~~----La~--~~-~W~lVVVgD~KTP~dw~l~~v~fLSve~Q~~L~----f~~~~~--LP~~ 171 (611)
...-|||.+-|.. +.+.+ |.+ .+ .+.++||-|..|....+. + .+..++.+ .++... .|-
T Consensus 40 p~VSVIIpa~Ne~-~~L~~~L~sL~~q~yp~~~eIIVVDd~StD~T~~i-----~-~~~~~~~~~~~~i~vi~~~~~~~- 111 (384)
T TIGR03469 40 PAVVAVVPARNEA-DVIGECVTSLLEQDYPGKLHVILVDDHSTDGTADI-----A-RAAARAYGRGDRLTVVSGQPLPP- 111 (384)
T ss_pred CCEEEEEecCCcH-hHHHHHHHHHHhCCCCCceEEEEEeCCCCCcHHHH-----H-HHHHHhcCCCCcEEEecCCCCCC-
Confidence 3467888877776 44433 332 23 589999999877643211 1 01111221 222221 111
Q ss_pred Cccch----hHHHHHHHHcC--CeEEEeecCCCcccC
Q 007238 172 SYVRK----SCGYLFAIQHG--AKKIFDADDRGDVIG 202 (611)
Q Consensus 172 SyaRK----NiGYLyAI~hG--Ae~IydtDDDN~p~~ 202 (611)
...-| |.|.-.|...+ .|+|.-+|+|..+..
T Consensus 112 g~~Gk~~A~n~g~~~A~~~~~~gd~llflDaD~~~~p 148 (384)
T TIGR03469 112 GWSGKLWAVSQGIAAARTLAPPADYLLLTDADIAHGP 148 (384)
T ss_pred CCcchHHHHHHHHHHHhccCCCCCEEEEECCCCCCCh
Confidence 12223 44555444333 799999999998654
No 17
>cd02165 NMNAT Nicotinamide/nicotinate mononucleotide adenylyltransferase. Nicotinamide/nicotinate mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT). NMNAT represents the primary bacterial and eukaryotic adenylyltransferases for nicotinamide-nucleotide and for the deamido form, nicotinate nucleotide. It is an indispensable enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. Human NMNAT displays unique dual substrate specificity toward both NMN and NaMN, and can participate in both de novo and salvage pathways of NAD synthesis.
Probab=30.24 E-value=79 Score=30.83 Aligned_cols=31 Identities=19% Similarity=0.413 Sum_probs=27.6
Q ss_pred chhhhhhHHHHhhcCCCceEEEeecceeeec
Q 007238 557 EQVYRHLPKIFSRYTSAEGFLFLQDDTILNY 587 (611)
Q Consensus 557 ~~~Y~~L~k~~~~~~~~~GYl~~~DD~ifN~ 587 (611)
.+.|.+|...-++||+++=||.|+.|.+.++
T Consensus 79 ~~t~~tl~~l~~~~p~~~~~~liG~D~l~~~ 109 (192)
T cd02165 79 SYTIDTLEELRERYPNAELYFIIGSDNLIRL 109 (192)
T ss_pred CCHHHHHHHHHHhccCCCEEEEEcHHHhhhc
Confidence 4678889888889999999999999999886
No 18
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=29.64 E-value=1.1e+02 Score=29.28 Aligned_cols=84 Identities=11% Similarity=0.152 Sum_probs=44.7
Q ss_pred EEEEEeccCCcHHHHh----hhccCCeEEEEEeCCCCCCCCCCCCceeecHHHHhhcCCcccccc--CCCCccc-hhHHH
Q 007238 108 WIVVSVDRYPTDSLKK----LVKIKGWQVLAIGNSRTPKNWNLKGAIFLSLDMQANLGFRVLDFL--PYDSYVR-KSCGY 180 (611)
Q Consensus 108 wIVvTTI~~Pt~~v~~----La~~~~W~lVVVgD~KTP~dw~l~~v~fLSve~Q~~L~f~~~~~L--P~~SyaR-KNiGY 180 (611)
-||+++-+.+.+.+.+ +.+....+++||-|..|...-. .| + | ...+.....+ +-...++ .|.|.
T Consensus 3 sVvIp~~ne~~~~l~~~l~sl~~q~~~eiivvdd~s~d~~~~-----~l--~-~-~~~~~~~~v~~~~~~g~~~a~n~g~ 73 (235)
T cd06434 3 TVIIPVYDEDPDVFRECLRSILRQKPLEIIVVTDGDDEPYLS-----IL--S-Q-TVKYGGIFVITVPHPGKRRALAEGI 73 (235)
T ss_pred EEEEeecCCChHHHHHHHHHHHhCCCCEEEEEeCCCChHHHH-----HH--H-h-hccCCcEEEEecCCCChHHHHHHHH
Confidence 4788888888444433 3333468999998877654211 11 1 1 1111111111 1111111 13343
Q ss_pred HHHHHcCCeEEEeecCCCcccCC
Q 007238 181 LFAIQHGAKKIFDADDRGDVIGD 203 (611)
Q Consensus 181 LyAI~hGAe~IydtDDDN~p~~~ 203 (611)
-.| .+++|+-+|+|..+..+
T Consensus 74 ~~a---~~d~v~~lD~D~~~~~~ 93 (235)
T cd06434 74 RHV---TTDIVVLLDSDTVWPPN 93 (235)
T ss_pred HHh---CCCEEEEECCCceeChh
Confidence 332 78999999999998875
No 19
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=27.23 E-value=3.2e+02 Score=22.86 Aligned_cols=87 Identities=10% Similarity=0.101 Sum_probs=42.9
Q ss_pred EEEEeccCCcH---HHHhhhccC--CeEEEEEeCCCCCCCCCCCCceeecHHHHhhcCCccccccCCCCccchhHHHHHH
Q 007238 109 IVVSVDRYPTD---SLKKLVKIK--GWQVLAIGNSRTPKNWNLKGAIFLSLDMQANLGFRVLDFLPYDSYVRKSCGYLFA 183 (611)
Q Consensus 109 IVvTTI~~Pt~---~v~~La~~~--~W~lVVVgD~KTP~dw~l~~v~fLSve~Q~~L~f~~~~~LP~~SyaRKNiGYLyA 183 (611)
||+++-+.+.. .++.+.+.. .++++++-|..++..... ......... ....++......+.-++-+|
T Consensus 1 iii~~~~~~~~l~~~l~s~~~~~~~~~~i~i~~~~~~~~~~~~-------~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~ 72 (156)
T cd00761 1 VIIPAYNEEPYLERCLESLLAQTYPNFEVIVVDDGSTDGTLEI-------LEEYAKKDP-RVIRVINEENQGLAAARNAG 72 (156)
T ss_pred CEEeecCcHHHHHHHHHHHHhCCccceEEEEEeCCCCccHHHH-------HHHHHhcCC-CeEEEEecCCCChHHHHHHH
Confidence 35555555522 334444444 799999988766543111 011111101 11112222222333333344
Q ss_pred HHc-CCeEEEeecCCCcccCC
Q 007238 184 IQH-GAKKIFDADDRGDVIGD 203 (611)
Q Consensus 184 I~h-GAe~IydtDDDN~p~~~ 203 (611)
+++ +.++++-+|+|..+..+
T Consensus 73 ~~~~~~d~v~~~d~D~~~~~~ 93 (156)
T cd00761 73 LKAARGEYILFLDADDLLLPD 93 (156)
T ss_pred HHHhcCCEEEEECCCCccCcc
Confidence 333 68999999999876553
No 20
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=26.62 E-value=1.4e+02 Score=28.19 Aligned_cols=77 Identities=9% Similarity=0.057 Sum_probs=43.1
Q ss_pred EEEEeccCCcH---HHHhhhc--cCCeEEEEEeCCCCCCCCCC---CCceeecHHHHhhcCCccccccCCCCccchhHHH
Q 007238 109 IVVSVDRYPTD---SLKKLVK--IKGWQVLAIGNSRTPKNWNL---KGAIFLSLDMQANLGFRVLDFLPYDSYVRKSCGY 180 (611)
Q Consensus 109 IVvTTI~~Pt~---~v~~La~--~~~W~lVVVgD~KTP~dw~l---~~v~fLSve~Q~~L~f~~~~~LP~~SyaRKNiGY 180 (611)
||+++-+.+.. .++.+++ ...+.+|||-|..|+..... .+++++ ..-+-.+.+ .|.|.
T Consensus 3 vii~~~n~~~~l~~~l~sl~~q~~~~~evivvdd~s~d~~~~~~~~~~~~~~-------------~~~~g~~~a-~n~g~ 68 (221)
T cd02522 3 IIIPTLNEAENLPRLLASLRRLNPLPLEIIVVDGGSTDGTVAIARSAGVVVI-------------SSPKGRARQ-MNAGA 68 (221)
T ss_pred EEEEccCcHHHHHHHHHHHHhccCCCcEEEEEeCCCCccHHHHHhcCCeEEE-------------eCCcCHHHH-HHHHH
Confidence 67777777632 2333333 25699999988766543221 222222 111111222 36665
Q ss_pred HHHHHcCCeEEEeecCCCcccC
Q 007238 181 LFAIQHGAKKIFDADDRGDVIG 202 (611)
Q Consensus 181 LyAI~hGAe~IydtDDDN~p~~ 202 (611)
-.|- .++|.-+|+|..+..
T Consensus 69 ~~a~---~~~i~~~D~D~~~~~ 87 (221)
T cd02522 69 AAAR---GDWLLFLHADTRLPP 87 (221)
T ss_pred Hhcc---CCEEEEEcCCCCCCh
Confidence 5442 599999999988754
No 21
>PRK10018 putative glycosyl transferase; Provisional
Probab=25.45 E-value=1.5e+02 Score=31.08 Aligned_cols=86 Identities=10% Similarity=0.160 Sum_probs=46.4
Q ss_pred CeEEEEEeccCCcHHHHhhhc-----cCCeEEEEEeCCCCCCCCCCCCceeecHHHHhhcCCccccccCCCCccchhHHH
Q 007238 106 EKWIVVSVDRYPTDSLKKLVK-----IKGWQVLAIGNSRTPKNWNLKGAIFLSLDMQANLGFRVLDFLPYDSYVRKSCGY 180 (611)
Q Consensus 106 ~~wIVvTTI~~Pt~~v~~La~-----~~~W~lVVVgD~KTP~dw~l~~v~fLSve~Q~~L~f~~~~~LP~~SyaRKNiGY 180 (611)
..-||+++-|.+....+.|.+ .+.|.++||-|-.| +.. ...+..++++..-..++. ..+|.|.
T Consensus 6 ~VSVIip~yN~~~~l~~~l~Svl~Qt~~~~EiIVVDDgS~--~~~------~~~~~~~~~~~~ri~~i~----~~~n~G~ 73 (279)
T PRK10018 6 LISIYMPTWNRQQLAIRAIKSVLRQDYSNWEMIIVDDCST--SWE------QLQQYVTALNDPRITYIH----NDINSGA 73 (279)
T ss_pred EEEEEEEeCCCHHHHHHHHHHHHhCCCCCeEEEEEECCCC--CHH------HHHHHHHHcCCCCEEEEE----CCCCCCH
Confidence 356778877777433333332 56899999999776 210 012222233221111111 1244554
Q ss_pred HHHHH-----cCCeEEEeecCCCcccCC
Q 007238 181 LFAIQ-----HGAKKIFDADDRGDVIGD 203 (611)
Q Consensus 181 LyAI~-----hGAe~IydtDDDN~p~~~ 203 (611)
-.|.. ...++|.-+|+|-....+
T Consensus 74 ~~a~N~gi~~a~g~~I~~lDaDD~~~p~ 101 (279)
T PRK10018 74 CAVRNQAIMLAQGEYITGIDDDDEWTPN 101 (279)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCcc
Confidence 44433 347899999999876543
No 22
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=23.89 E-value=3.9e+02 Score=28.61 Aligned_cols=39 Identities=18% Similarity=0.265 Sum_probs=24.3
Q ss_pred CCCeEEEEEeccCCcHHHHh----hhc----------cCCeEEEEEeCCCCCCC
Q 007238 104 RSEKWIVVSVDRYPTDSLKK----LVK----------IKGWQVLAIGNSRTPKN 143 (611)
Q Consensus 104 ~~~~wIVvTTI~~Pt~~v~~----La~----------~~~W~lVVVgD~KTP~d 143 (611)
....-|||++-|.. +.+.+ +.+ ...+.++||=|-.|...
T Consensus 69 ~~~isVVIP~yNe~-~~i~~~L~~l~~~~~~~~~~~~~~~~EIIVVDDgStD~T 121 (333)
T PTZ00260 69 DVDLSIVIPAYNEE-DRLPKMLKETIKYLESRSRKDPKFKYEIIIVNDGSKDKT 121 (333)
T ss_pred CeEEEEEEeeCCCH-HHHHHHHHHHHHHHHhhhccCCCCCEEEEEEeCCCCCch
Confidence 34567888866665 43433 221 12699999998776544
No 23
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=23.24 E-value=2.2e+02 Score=25.88 Aligned_cols=85 Identities=11% Similarity=0.118 Sum_probs=42.5
Q ss_pred EEEEeccCCcHHHHh----hhc--cCCeEEEEEeCCCCCCCCCCCCceeecHHHHhhcCCccccccCCCCcc-chhHHHH
Q 007238 109 IVVSVDRYPTDSLKK----LVK--IKGWQVLAIGNSRTPKNWNLKGAIFLSLDMQANLGFRVLDFLPYDSYV-RKSCGYL 181 (611)
Q Consensus 109 IVvTTI~~Pt~~v~~----La~--~~~W~lVVVgD~KTP~dw~l~~v~fLSve~Q~~L~f~~~~~LP~~Sya-RKNiGYL 181 (611)
||+++-+.+ +.+++ +.+ .+++.++||-|..|+.... .+. +.... ......-+-...+ -.|.|.-
T Consensus 2 ivi~~~n~~-~~l~~~l~sl~~q~~~~~evivvDd~s~d~~~~-----~~~-~~~~~--~~~~~~~~~~g~~~a~n~~~~ 72 (202)
T cd06433 2 IITPTYNQA-ETLEETIDSVLSQTYPNIEYIVIDGGSTDGTVD-----IIK-KYEDK--ITYWISEPDKGIYDAMNKGIA 72 (202)
T ss_pred EEEeccchH-HHHHHHHHHHHhCCCCCceEEEEeCCCCccHHH-----HHH-HhHhh--cEEEEecCCcCHHHHHHHHHH
Confidence 677767766 44433 332 4569999998877655421 110 00011 0000000111111 1344433
Q ss_pred HHHHcCCeEEEeecCCCcccCCCC
Q 007238 182 FAIQHGAKKIFDADDRGDVIGDDL 205 (611)
Q Consensus 182 yAI~hGAe~IydtDDDN~p~~~~l 205 (611)
.| .+++|.-+|+|..+..+.+
T Consensus 73 ~a---~~~~v~~ld~D~~~~~~~~ 93 (202)
T cd06433 73 LA---TGDIIGFLNSDDTLLPGAL 93 (202)
T ss_pred Hc---CCCEEEEeCCCcccCchHH
Confidence 22 4689999999998776443
No 24
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=22.49 E-value=3e+02 Score=23.90 Aligned_cols=82 Identities=16% Similarity=0.205 Sum_probs=41.7
Q ss_pred EEEEeccCCcH---HHHhhhc--cCCeEEEEEeCCCCCCCCCCCCceeecHHHHhhc-----CCccccccCCCCccchhH
Q 007238 109 IVVSVDRYPTD---SLKKLVK--IKGWQVLAIGNSRTPKNWNLKGAIFLSLDMQANL-----GFRVLDFLPYDSYVRKSC 178 (611)
Q Consensus 109 IVvTTI~~Pt~---~v~~La~--~~~W~lVVVgD~KTP~dw~l~~v~fLSve~Q~~L-----~f~~~~~LP~~SyaRKNi 178 (611)
||++|-+.+.. .++.|.+ ...++++||-|..|+.. .+..+++ ++++.. .|-+. .+.-
T Consensus 2 vvip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~~----------~~~~~~~~~~~~~i~~i~-~~~n~--g~~~ 68 (169)
T PF00535_consen 2 VVIPTYNEAEYLERTLESLLKQTDPDFEIIVVDDGSTDET----------EEILEEYAESDPNIRYIR-NPENL--GFSA 68 (169)
T ss_dssp EEEEESS-TTTHHHHHHHHHHHSGCEEEEEEEECS-SSSH----------HHHHHHHHCCSTTEEEEE-HCCCS--HHHH
T ss_pred EEEEeeCCHHHHHHHHHHHhhccCCCEEEEEecccccccc----------cccccccccccccccccc-ccccc--cccc
Confidence 78888888743 3333333 47899999999886654 1111111 222221 12221 2222
Q ss_pred HHHHHHH-cCCeEEEeecCCCcccCC
Q 007238 179 GYLFAIQ-HGAKKIFDADDRGDVIGD 203 (611)
Q Consensus 179 GYLyAI~-hGAe~IydtDDDN~p~~~ 203 (611)
+.-.|++ ...++|.-+|||..+..+
T Consensus 69 ~~n~~~~~a~~~~i~~ld~D~~~~~~ 94 (169)
T PF00535_consen 69 ARNRGIKHAKGEYILFLDDDDIISPD 94 (169)
T ss_dssp HHHHHHHH--SSEEEEEETTEEE-TT
T ss_pred cccccccccceeEEEEeCCCceEcHH
Confidence 2222211 234599999999987775
No 25
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=22.36 E-value=80 Score=31.82 Aligned_cols=28 Identities=11% Similarity=0.130 Sum_probs=24.6
Q ss_pred hhHHHHHHHHcCCeEEEeecCCCcccCC
Q 007238 176 KSCGYLFAIQHGAKKIFDADDRGDVIGD 203 (611)
Q Consensus 176 KNiGYLyAI~hGAe~IydtDDDN~p~~~ 203 (611)
.|.|.-+|.++|+++|.-+|||..+..+
T Consensus 62 ~N~Gi~~a~~~~~d~i~~lD~D~~~~~~ 89 (281)
T TIGR01556 62 QNQGLDASFRRGVQGVLLLDQDSRPGNA 89 (281)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCHH
Confidence 6888888988999999999999998653
No 26
>COG3141 DNA damage-inducible gene in SOS regulon, dependent on cyclic AMP and H-NS , pqiA [General function prediction only]
Probab=22.07 E-value=1.2e+02 Score=27.58 Aligned_cols=44 Identities=20% Similarity=0.156 Sum_probs=33.9
Q ss_pred CCchhhhHHHhhhHHHHHhccccCCc-cCH-HHHHHHHHHHHHHcC
Q 007238 385 PFSEEKDLHVNVGRLIKFLVSWRSNK-HRF-FEKVLELSHSMAEEG 428 (611)
Q Consensus 385 DF~dE~~ly~~sg~lv~fL~~W~~~~-~~l-~e~i~~L~~~l~e~g 428 (611)
-=+.|.|.|.+.=++.+-|.+|-... -.+ .+.-.+|+--|++++
T Consensus 20 tsK~EADayDKMLd~Ad~L~e~L~ks~~~leeeq~E~Ls~flAenk 65 (97)
T COG3141 20 TSKKEADAYDKMLDTADLLDEWLTKSPVSLEEEQREALSLFLAENK 65 (97)
T ss_pred ccHHHHhHHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHhH
Confidence 34789999999999999999995443 244 456777888888763
No 27
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=21.48 E-value=1.6e+02 Score=28.27 Aligned_cols=88 Identities=11% Similarity=0.079 Sum_probs=43.2
Q ss_pred EEEEeccCCcHHHHhhh----c--cC-CeEEEEEeCCCCCCCCCCCCceeecHHHHhhcCCccccccCCCCccchhHHHH
Q 007238 109 IVVSVDRYPTDSLKKLV----K--IK-GWQVLAIGNSRTPKNWNLKGAIFLSLDMQANLGFRVLDFLPYDSYVRKSCGYL 181 (611)
Q Consensus 109 IVvTTI~~Pt~~v~~La----~--~~-~W~lVVVgD~KTP~dw~l~~v~fLSve~Q~~L~f~~~~~LP~~SyaRKNiGYL 181 (611)
||+.+-+.. +.++++. + .+ .|.++||-|-.|.... ..+ .+.+++++..-...+--.+...+|.|.-
T Consensus 1 ViIp~yn~~-~~l~~~l~sl~~q~~~~~~eiiVvDd~S~d~t~-----~i~-~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 73 (219)
T cd06913 1 IILPVHNGE-QWLDECLESVLQQDFEGTLELSVFNDASTDKSA-----EII-EKWRKKLEDSGVIVLVGSHNSPSPKGVG 73 (219)
T ss_pred CEEeecCcH-HHHHHHHHHHHhCCCCCCEEEEEEeCCCCccHH-----HHH-HHHHHhCcccCeEEEEecccCCCCccHH
Confidence 456655554 4444433 2 33 5999999886555432 111 1223344331111110011223334443
Q ss_pred HHHHc-----CCeEEEeecCCCcccCC
Q 007238 182 FAIQH-----GAKKIFDADDRGDVIGD 203 (611)
Q Consensus 182 yAI~h-----GAe~IydtDDDN~p~~~ 203 (611)
+|... ..++|.-+|+|..+..+
T Consensus 74 ~a~N~g~~~a~gd~i~~lD~D~~~~~~ 100 (219)
T cd06913 74 YAKNQAIAQSSGRYLCFLDSDDVMMPQ 100 (219)
T ss_pred HHHHHHHHhcCCCEEEEECCCccCChh
Confidence 33333 35899999999875553
No 28
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=20.60 E-value=2.3e+02 Score=26.31 Aligned_cols=83 Identities=7% Similarity=0.008 Sum_probs=43.4
Q ss_pred EEEEeccCCcHHHH---hhhc--cCCeEEEEEeCCCCCCCCCCCCceeecHHHHhhcCCccccccCCCCccchhHHHHHH
Q 007238 109 IVVSVDRYPTDSLK---KLVK--IKGWQVLAIGNSRTPKNWNLKGAIFLSLDMQANLGFRVLDFLPYDSYVRKSCGYLFA 183 (611)
Q Consensus 109 IVvTTI~~Pt~~v~---~La~--~~~W~lVVVgD~KTP~dw~l~~v~fLSve~Q~~L~f~~~~~LP~~SyaRKNiGYLyA 183 (611)
||+.+-+.+....+ .+.+ .+.|+++||-|..|...... + .+.+++.+ ....+ ....+|.|+-.|
T Consensus 2 IvIp~yn~~~~l~~~l~sl~~q~~~~~eiiVvddgS~d~t~~~-----~-~~~~~~~~-~~~~~----~~~~~~~G~~~~ 70 (214)
T cd04196 2 VLMATYNGEKYLREQLDSILAQTYKNDELIISDDGSTDGTVEI-----I-KEYIDKDP-FIIIL----IRNGKNLGVARN 70 (214)
T ss_pred EEEEecCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCCCcHHH-----H-HHHHhcCC-ceEEE----EeCCCCccHHHH
Confidence 77887877733222 3332 35799999988777543211 0 11112222 11111 112234444332
Q ss_pred -----HHcCCeEEEeecCCCcccC
Q 007238 184 -----IQHGAKKIFDADDRGDVIG 202 (611)
Q Consensus 184 -----I~hGAe~IydtDDDN~p~~ 202 (611)
.+.++++|+-+|+|.....
T Consensus 71 ~n~g~~~~~g~~v~~ld~Dd~~~~ 94 (214)
T cd04196 71 FESLLQAADGDYVFFCDQDDIWLP 94 (214)
T ss_pred HHHHHHhCCCCEEEEECCCcccCh
Confidence 3357899999999976554
No 29
>PRK08887 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=20.16 E-value=1.5e+02 Score=28.89 Aligned_cols=60 Identities=13% Similarity=0.160 Sum_probs=40.2
Q ss_pred ccHHHHHHHhhcc-ccEEEEecCCCCCCceeee---cccchhhhhhHHHHhhcCCCceEEEeecceeeec
Q 007238 522 RTALEWRLLYGRI-FKTVIILSEQKNEDLAVEA---GQLEQVYRHLPKIFSRYTSAEGFLFLQDDTILNY 587 (611)
Q Consensus 522 ~~~~~~r~lY~~~-F~~VIf~g~~~n~~~~ve~---~~g~~~Y~~L~k~~~~~~~~~GYl~~~DD~ifN~ 587 (611)
.-+.+++.+.+.+ ...+.++.-+ ++. +.-.++|.+|....++||+.+=||.|+-|.+.++
T Consensus 50 ~R~~M~~~ai~~~~~~~~~v~~~E------~~~~~~~~~~yT~~tl~~l~~~~p~~~~~~iiG~D~l~~l 113 (174)
T PRK08887 50 TRCQLVDAFIQDLGLSNVQRSDIE------QELYAPDESVTTYALLTRLQELYPEADLTFVIGPDNFLKF 113 (174)
T ss_pred HHHHHHHHHHhccCCCceEEehHH------hhhccCCCCcchHHHHHHHHHHCCCCeEEEEEccchHHHH
Confidence 3466677777765 3445443211 111 1125788899888889999999999999998653
No 30
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=20.08 E-value=1.9e+02 Score=27.48 Aligned_cols=48 Identities=15% Similarity=0.013 Sum_probs=27.1
Q ss_pred cccccccchhchhhccccccccccch-hhHHHHHHHHHHHHcCcEEEEcCCeee
Q 007238 324 NSFNTIYQSSAFWALMLPVSVSTMAS-DVLRGFWGQRLLWEIGGYVVVYPPTVH 376 (611)
Q Consensus 324 NSQNTlfh~~AFwgL~LP~tvs~R~t-DIWRsY~aQrlLw~~G~~v~F~pP~v~ 376 (611)
.+...+|.++++..++-.... .++. |+. +. ..+...|..+...|-.-+
T Consensus 157 ~~g~~~~~r~~~~~~~~~~~~-~~~~~d~e---l~-~r~~~~g~~~~~vpi~~~ 205 (211)
T cd04188 157 QCGFKLFTRDAARRLFPRLHL-ERWAFDVE---LL-VLARRLGYPIEEVPVRWV 205 (211)
T ss_pred ccCceeEcHHHHHHHHhhhhc-cceEeeHH---HH-HHHHHcCCeEEEcCccee
Confidence 345678888888776522221 2222 432 23 334458889998884433
Done!