Query 007238
Match_columns 611
No_of_seqs 91 out of 93
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 20:43:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007238.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007238hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zyq_A Hepatocyte growth facto 58.8 10 0.00036 37.0 5.1 69 386-457 80-148 (226)
2 1x5b_A Signal transducing adap 54.3 15 0.00052 34.2 5.2 69 386-457 87-155 (163)
3 2fy7_A Beta-1,4-galactosyltran 50.5 21 0.0007 35.9 5.8 71 105-203 65-145 (287)
4 3ldz_A STAM-1, signal transduc 45.3 17 0.0006 32.9 3.9 42 411-453 99-140 (140)
5 1elk_A Target of MYB1; superhe 43.8 20 0.0007 33.1 4.2 42 412-454 116-157 (157)
6 1dvp_A HRS, hepatocyte growth 37.0 29 0.00099 33.4 4.3 68 386-456 77-144 (220)
7 3ro3_B Minsc, peptide of prote 34.1 22 0.00075 23.4 1.9 16 433-448 5-20 (22)
8 2wvl_A Mannosyl-3-phosphoglyce 28.6 29 0.00098 37.2 2.9 96 103-202 51-174 (391)
9 3bcv_A Putative glycosyltransf 21.2 1.8E+02 0.0063 26.3 6.6 53 324-380 172-226 (240)
10 2d0j_A Galactosylgalactosylxyl 20.2 1.4E+02 0.0047 30.1 5.8 12 188-199 101-112 (246)
No 1
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=58.76 E-value=10 Score=36.97 Aligned_cols=69 Identities=19% Similarity=0.159 Sum_probs=49.3
Q ss_pred CchhhhHHHhhhHHHHHhccccCCccCHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHhcCCCCCcccc
Q 007238 386 FSEEKDLHVNVGRLIKFLVSWRSNKHRFFEKVLELSHSMAEEGFWTERDVKFTAAWLQDLIAVGYQQPRLMS 457 (611)
Q Consensus 386 F~dE~~ly~~sg~lv~fL~~W~~~~~~l~e~i~~L~~~l~e~gfw~~~Dv~l~~aWL~DL~~vGy~~P~l~~ 457 (611)
|..|+---+-.+.|++.+.. ......-++|++|....++ .|=++.++..+..--+.|++-||+||.+..
T Consensus 80 f~~eias~~fl~~l~~l~~~--~~~~~Vk~kil~li~~W~~-~f~~~~~l~~i~~~Y~~Lk~~G~~FP~~~~ 148 (226)
T 3zyq_A 80 VHDEVANKQTMEELKDLLKR--QVEVNVRNKILYLIQAWAH-AFRNEPKYKVVQDTYQIMKVEGHVFPEFKE 148 (226)
T ss_dssp HHHHHSSHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHH-HTTTCGGGHHHHHHHHHHHHHTCCCCCCCG
T ss_pred HHHhhccHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHHH-HhCCCcchHHHHHHHHHHHhcCCCcccchh
Confidence 45554444444555555532 2334678899999888887 366677888899999999999999999754
No 2
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=54.29 E-value=15 Score=34.24 Aligned_cols=69 Identities=16% Similarity=0.131 Sum_probs=46.1
Q ss_pred CchhhhHHHhhhHHHHHhccccCCccCHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHhcCCCCCcccc
Q 007238 386 FSEEKDLHVNVGRLIKFLVSWRSNKHRFFEKVLELSHSMAEEGFWTERDVKFTAAWLQDLIAVGYQQPRLMS 457 (611)
Q Consensus 386 F~dE~~ly~~sg~lv~fL~~W~~~~~~l~e~i~~L~~~l~e~gfw~~~Dv~l~~aWL~DL~~vGy~~P~l~~ 457 (611)
|..|+---+-.++|++.+. +.....+-+++++|...-++ .|=+..++..+..--+.|++-||+||.+..
T Consensus 87 Fh~evas~~Fl~el~~l~~--~~~~~~Vk~kil~li~~W~~-~f~~~~~l~~i~~~Y~~Lk~~G~~FP~~~~ 155 (163)
T 1x5b_A 87 FHLEVCSRDFATEVRAVIK--NKAHPKVCEKLKSLMVEWSE-EFQKDPQFSLISATIKSMKEEGITFPPAGS 155 (163)
T ss_dssp HHHHHTSHHHHHHHHHHHH--TTCCHHHHHHHHHHHHHHHH-HTTTCSTTHHHHHHHHHHHTTTCCCCCCSS
T ss_pred HHHHHhhHHHHHHHHHHHc--cCCCHHHHHHHHHHHHHHHH-HhcCCcccHHHHHHHHHHHHcCCCCCCCCC
Confidence 4455544444455555553 22334567888888877776 344556678888888899999999999654
No 3
>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET: PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A* 2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A* 1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B* 1nkh_B* 1nqi_B* 1nwg_B* ...
Probab=50.48 E-value=21 Score=35.87 Aligned_cols=71 Identities=13% Similarity=0.089 Sum_probs=48.0
Q ss_pred CCeEEEEEeccCCcH---HHHhhh-----ccCCeEEEEEeCCCCCCCCCCCCceeecHHHHhhcCCccccccCCCCccc-
Q 007238 105 SEKWIVVSVDRYPTD---SLKKLV-----KIKGWQVLAIGNSRTPKNWNLKGAIFLSLDMQANLGFRVLDFLPYDSYVR- 175 (611)
Q Consensus 105 ~~~wIVvTTI~~Pt~---~v~~La-----~~~~W~lVVVgD~KTP~dw~l~~v~fLSve~Q~~L~f~~~~~LP~~SyaR- 175 (611)
...-|||++-|.+.. .++.|. ....+.++||-|.. | -+|+ .++
T Consensus 65 ~~VSIIIP~yN~~~~L~~~L~sl~~~l~q~~~~~EIiVVdds~---d----------------~~f~---------~a~a 116 (287)
T 2fy7_A 65 HKVAIIIPFRNRQEHLKYWLYYLHPVLQRQQLDYGIYVINQAG---D----------------TIFN---------RAKL 116 (287)
T ss_dssp CEEEEEEEESSCHHHHHHHHHHHHHHHHHTTCEEEEEEEEECS---S----------------SCCC---------HHHH
T ss_pred CcEEEEEeeCCCHHHHHHHHHHHHHHHHHhcCCceEEEEEeCC---C----------------Cccc---------hhhh
Confidence 347788998887733 333333 13478999998821 1 1221 122
Q ss_pred hhHHHHHHHH-cCCeEEEeecCCCcccCC
Q 007238 176 KSCGYLFAIQ-HGAKKIFDADDRGDVIGD 203 (611)
Q Consensus 176 KNiGYLyAI~-hGAe~IydtDDDN~p~~~ 203 (611)
+|+|+..|++ ...++|+-+|+|-.+..+
T Consensus 117 ~N~G~~~al~~A~gd~i~flD~D~i~~~d 145 (287)
T 2fy7_A 117 LNVGFQEALKDYDYTCFVFSDVDLIPMND 145 (287)
T ss_dssp HHHHHHHHHHHSCCCEEEEECTTEEESBT
T ss_pred hhhHHHHHHHhCCCCEEEEECCCcccCCC
Confidence 7999999975 478999999999988765
No 4
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=45.26 E-value=17 Score=32.93 Aligned_cols=42 Identities=19% Similarity=0.316 Sum_probs=31.8
Q ss_pred cCHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHhcCCCCC
Q 007238 411 HRFFEKVLELSHSMAEEGFWTERDVKFTAAWLQDLIAVGYQQP 453 (611)
Q Consensus 411 ~~l~e~i~~L~~~l~e~gfw~~~Dv~l~~aWL~DL~~vGy~~P 453 (611)
...-+++++|....++ .|=+..++..+..--+.|++-||+||
T Consensus 99 ~~Vk~kil~li~~W~~-~f~~~~~l~~i~~~Y~~Lk~~G~~FP 140 (140)
T 3ldz_A 99 PKVCEKLKALMVEWTD-EFKNDPQLSLISAMIKNLKEQGVTFP 140 (140)
T ss_dssp HHHHHHHHHHHHHHHH-HHTTCGGGTHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHH-HhCCCCCchHHHHHHHHHHHccCcCc
Confidence 4567788888777665 33345667778888889999999999
No 5
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=43.76 E-value=20 Score=33.07 Aligned_cols=42 Identities=29% Similarity=0.361 Sum_probs=30.9
Q ss_pred CHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHhcCCCCCc
Q 007238 412 RFFEKVLELSHSMAEEGFWTERDVKFTAAWLQDLIAVGYQQPR 454 (611)
Q Consensus 412 ~l~e~i~~L~~~l~e~gfw~~~Dv~l~~aWL~DL~~vGy~~P~ 454 (611)
.+-+++++|...-++. |=+..+...+..--+.|++-||+||.
T Consensus 116 ~Vk~kil~li~~W~~~-f~~~p~l~~i~~~Y~~Lk~~G~~FP~ 157 (157)
T 1elk_A 116 IVHDKVLNLIQSWADA-FRSSPDLTGVVTIYEDLRRKGLEFPM 157 (157)
T ss_dssp HHHHHHHHHHHHHHHH-HTTCTTCHHHHHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHHHHHHH-cCCCcchHHHHHHHHHHHHcCCCCCC
Confidence 4567777777766653 33455677788888899999999994
No 6
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=36.95 E-value=29 Score=33.42 Aligned_cols=68 Identities=25% Similarity=0.212 Sum_probs=44.8
Q ss_pred CchhhhHHHhhhHHHHHhccccCCccCHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHhcCCCCCccc
Q 007238 386 FSEEKDLHVNVGRLIKFLVSWRSNKHRFFEKVLELSHSMAEEGFWTERDVKFTAAWLQDLIAVGYQQPRLM 456 (611)
Q Consensus 386 F~dE~~ly~~sg~lv~fL~~W~~~~~~l~e~i~~L~~~l~e~gfw~~~Dv~l~~aWL~DL~~vGy~~P~l~ 456 (611)
|..|+---+-.+.|++.+.+ .....+-+++++|....++. |=+..+...+..=.+.|++-|+.||.+.
T Consensus 77 f~~eva~~~fl~~l~~l~~~--~~~~~Vk~kil~li~~W~~~-f~~~~~~~~i~~~y~~Lk~~G~~FP~~~ 144 (220)
T 1dvp_A 77 VHEEVFTKENCEMFSSFLES--TPHENVRQKMLELVQTWAYA-FRSSDKYQAIKDTMTILKAKGHTFPELR 144 (220)
T ss_dssp HHHHHSSHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHHHH-TTTCSSCCHHHHHHHHHHHTTCCCCCCC
T ss_pred HHHHHHhHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHHHH-hccchHHHHHHHHHHHHhhcCccccccc
Confidence 34444333344445555544 22345678888888877765 5555566677777889999999999974
No 7
>3ro3_B Minsc, peptide of protein inscuteable homolog; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=34.14 E-value=22 Score=23.36 Aligned_cols=16 Identities=25% Similarity=0.526 Sum_probs=13.1
Q ss_pred hhHHHHHHHHHHHHhc
Q 007238 433 RDVKFTAAWLQDLIAV 448 (611)
Q Consensus 433 ~Dv~l~~aWL~DL~~v 448 (611)
-+++..+.|++||+-+
T Consensus 5 ~qvDSV~rWmeDLr~M 20 (22)
T 3ro3_B 5 MQVDSVQRWMEDLKLM 20 (26)
T ss_pred hhhHHHHHHHHHHHhh
Confidence 3678899999999864
No 8
>2wvl_A Mannosyl-3-phosphoglycerate synthase; GT-A fold, transferase, glycosyltransferase, retaining mecha glucosyl transferase; HET: GDD; 2.81A {Thermus thermophilus} PDB: 2wvk_A* 2wvm_A*
Probab=28.65 E-value=29 Score=37.20 Aligned_cols=96 Identities=20% Similarity=0.204 Sum_probs=56.4
Q ss_pred cCCCeEEEEEeccCCcHHHHhhhc--cCCeEEEEEeCCCCCCCCC-------------CCCceeecHHHHhhcCCc----
Q 007238 103 FRSEKWIVVSVDRYPTDSLKKLVK--IKGWQVLAIGNSRTPKNWN-------------LKGAIFLSLDMQANLGFR---- 163 (611)
Q Consensus 103 ~~~~~wIVvTTI~~Pt~~v~~La~--~~~W~lVVVgD~KTP~dw~-------------l~~v~fLSve~Q~~L~f~---- 163 (611)
....--|||..-|.-.-.++.+.+ ..++.+++|=|.+ |.++. ...+...- |+.-|.+
T Consensus 51 i~~klSIVVPvYNEe~~lLesVl~qi~~d~eIIlVdDGS-~D~s~~e~dil~~~~~~~~~ri~viH---Qkn~gls~Ar~ 126 (391)
T 2wvl_A 51 VLEQTAIVVPTRNERLKLLEGVLSGIPHEALILVASNSS-PDRFQMERDLLEEFAHLTERPALIFH---QKDPALAEALR 126 (391)
T ss_dssp HHTTEEEEEEESSCCHHHHHHHHHTSCTTSEEEEEECCC-HHHHHHHHHHHHHHHHHTTCCEEEEE---TTCHHHHHHHH
T ss_pred HHhceEEEEeccCcHHHHHHHHHhcCCCCceEEEEECCC-CCChHhHHHHHHHHHhhcccceEEEe---ccChHHHHHHH
Confidence 344568999988877656666664 3589999999977 33321 11222221 3322221
Q ss_pred ---cccccCCCCccc--hh----HHHHHHHHcCCeEEEeecCCCcccC
Q 007238 164 ---VLDFLPYDSYVR--KS----CGYLFAIQHGAKKIFDADDRGDVIG 202 (611)
Q Consensus 164 ---~~~~LP~~SyaR--KN----iGYLyAI~hGAe~IydtDDDN~p~~ 202 (611)
+.++|=-+...| |- +|.+.|-..|+++|-.+|-||+.-+
T Consensus 127 ~~G~~~il~~~~~vR~GKGegmi~Gi~~Ak~~~geYVgFvDADdyi~~ 174 (391)
T 2wvl_A 127 AGGYPHPIGEDGLVRSGKAEGMILALVFAALSGRRYVGFIDADNYFPG 174 (391)
T ss_dssp HTTCCTTBCTTSSBCCSHHHHHHHHHHHHHHTTCSEEEECCSCBSCHH
T ss_pred hcCcchhhcccccccccchHHHHHHHHHHHhcCCCEEEEEcCcCCCcc
Confidence 122222223333 33 3566666669999999999998644
No 9
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=21.16 E-value=1.8e+02 Score=26.27 Aligned_cols=53 Identities=15% Similarity=0.205 Sum_probs=28.5
Q ss_pred cccccccchhchhh--ccccccccccchhhHHHHHHHHHHHHcCcEEEEcCCeeeeecC
Q 007238 324 NSFNTIYQSSAFWA--LMLPVSVSTMASDVLRGFWGQRLLWEIGGYVVVYPPTVHRYDK 380 (611)
Q Consensus 324 NSQNTlfh~~AFwg--L~LP~tvs~R~tDIWRsY~aQrlLw~~G~~v~F~pP~v~q~RN 380 (611)
+.-+.+|.+++|=. +-++-.......|.. |.-|+ ...|..+.+.|-.+.++|.
T Consensus 172 ~~~~~~~rr~~~~~~g~~f~~~~~~~~eD~~---~~~r~-~~~g~~i~~~~~~~~~yr~ 226 (240)
T 3bcv_A 172 SAKVVLYRRNLIEKKHLRFVSERILPSEDLI---FNVDV-LANSNIVCVLPQTFYNYRT 226 (240)
T ss_dssp TCSCEEEEHHHHHHTTCCCCCTTTCTTHHHH---HHHHH-HTTCSCEEECC--------
T ss_pred chhheeeeHHHHHHcCCccCCCCCccCCCHH---HHHHH-HHhCCEEEEECCCeEEEEe
Confidence 34567899998875 445443222446753 34444 4569999999977877774
No 10
>2d0j_A Galactosylgalactosylxylosylprotein 3-beta- glucuronosyltransferase 2; rossmann-like fold, glucuronyltransferase; 2.00A {Homo sapiens}
Probab=20.19 E-value=1.4e+02 Score=30.08 Aligned_cols=12 Identities=33% Similarity=0.409 Sum_probs=10.2
Q ss_pred CeEEEeecCCCc
Q 007238 188 AKKIFDADDRGD 199 (611)
Q Consensus 188 Ae~IydtDDDN~ 199 (611)
.=++|.+||||.
T Consensus 101 ~GVVyFADDdNt 112 (246)
T 2d0j_A 101 PGVLFFADDDNT 112 (246)
T ss_dssp CCEEEECCTTCE
T ss_pred cceEEEccCCCc
Confidence 368999999994
Done!