Query 007238
Match_columns 611
No_of_seqs 91 out of 93
Neff 4.3
Searched_HMMs 13730
Date Mon Mar 25 20:43:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007238.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/007238hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1dvpa1 a.118.9.2 (A:1-145) Hr 61.0 3.1 0.00023 35.8 3.9 68 386-456 77-144 (145)
2 d1elka_ a.118.9.2 (A:) Tom1 pr 37.2 14 0.001 31.9 4.2 41 412-453 112-152 (153)
3 d1o66a_ c.1.12.8 (A:) Ketopant 25.4 21 0.0016 33.7 3.6 86 104-192 13-111 (260)
4 d1omza_ c.68.1.15 (A:) Alpha-1 20.6 58 0.0043 26.4 5.1 28 175-202 64-96 (265)
5 d1m3ua_ c.1.12.8 (A:) Ketopant 18.5 29 0.0021 32.8 2.9 84 104-192 13-110 (262)
6 d1v54l_ f.23.6.1 (L:) Mitochon 15.2 79 0.0058 22.5 3.8 33 25-60 6-41 (46)
7 d1qg8a_ c.68.1.1 (A:) Spore co 13.8 40 0.0029 29.1 2.4 88 108-202 4-103 (255)
8 d3cu0a1 c.68.1.7 (A:75-335) 1, 11.6 2E+02 0.014 26.8 6.8 11 189-199 114-124 (261)
9 d1juqa_ a.118.9.2 (A:) ADP-rib 10.1 2.2E+02 0.016 23.7 6.1 65 386-454 74-141 (151)
10 d2ajta1 b.43.2.2 (A:329-498) L 9.9 1.2E+02 0.0088 26.7 4.3 66 76-143 91-156 (170)
No 1
>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=61.03 E-value=3.1 Score=35.84 Aligned_cols=68 Identities=25% Similarity=0.214 Sum_probs=46.1
Q ss_pred CchhhhHHHhhhHHHHHhccccCCccCHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHhcCCCCCccc
Q 007238 386 FSEEKDLHVNVGRLIKFLVSWRSNKHRFFEKVLELSHSMAEEGFWTERDVKFTAAWLQDLIAVGYQQPRLM 456 (611)
Q Consensus 386 F~dE~~ly~~sg~lv~fL~~W~~~~~~l~e~i~~L~~~l~e~gfw~~~Dv~l~~aWL~DL~~vGy~~P~l~ 456 (611)
|..|+.-.+-...|++.+.. .+....-+++++|....++ .|-++.++..+..=-+.|++-||+||.|.
T Consensus 77 f~~~i~s~~fl~~l~~l~~~--~~~~~Vk~kil~li~~W~~-~f~~~~~~~~i~~~y~~Lk~~G~~FP~l~ 144 (145)
T d1dvpa1 77 VHEEVFTKENCEMFSSFLES--TPHENVRQKMLELVQTWAY-AFRSSDKYQAIKDTMTILKAKGHTFPELR 144 (145)
T ss_dssp HHHHHSSHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHHH-HTTTCSSCCHHHHHHHHHHHTTCCCCCCC
T ss_pred HHHHHhhHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHH-HhCCCccchHHHHHHHHHHHCCCCCcCCC
Confidence 55555444455566665543 2233567888888888777 45555666666666677999999999975
No 2
>d1elka_ a.118.9.2 (A:) Tom1 protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=37.24 E-value=14 Score=31.95 Aligned_cols=41 Identities=29% Similarity=0.383 Sum_probs=32.2
Q ss_pred CHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHhcCCCCC
Q 007238 412 RFFEKVLELSHSMAEEGFWTERDVKFTAAWLQDLIAVGYQQP 453 (611)
Q Consensus 412 ~l~e~i~~L~~~l~e~gfw~~~Dv~l~~aWL~DL~~vGy~~P 453 (611)
..-+++++|.....+. |=+..+...+..=-+.|++-||+||
T Consensus 112 ~Vk~kil~li~~W~~~-f~~~p~~~~i~~~y~~Lk~~G~~FP 152 (153)
T d1elka_ 112 IVHDKVLNLIQSWADA-FRSSPDLTGVVTIYEDLRRKGLEFP 152 (153)
T ss_dssp HHHHHHHHHHHHHHHH-HTTCTTCHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHHHHH-hcCCccchHHHHHHHHHHHCCCCCC
Confidence 3678888888887774 4455677788888888999999999
No 3
>d1o66a_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Neisseria meningitidis [TaxId: 487]}
Probab=25.44 E-value=21 Score=33.67 Aligned_cols=86 Identities=16% Similarity=0.246 Sum_probs=51.9
Q ss_pred CCCeEEEEEeccCCcHHHHhhhccCCeEEEEEeCC--------CCCCCCCCCCceeecHHHHhhcCCc-cccccCCCCcc
Q 007238 104 RSEKWIVVSVDRYPTDSLKKLVKIKGWQVLAIGNS--------RTPKNWNLKGAIFLSLDMQANLGFR-VLDFLPYDSYV 174 (611)
Q Consensus 104 ~~~~wIVvTTI~~Pt~~v~~La~~~~W~lVVVgD~--------KTP~dw~l~~v~fLSve~Q~~L~f~-~~~~LP~~Sya 174 (611)
+++|...+|.-++| .-+++.-.|-.+++|||+ ++-..-.++.+++-+.+--+.-+-. +..-+||.||.
T Consensus 13 ~g~ki~~lTayd~~---~A~~ae~agiDiilVGDSlgm~~~G~~~T~~vt~d~mi~h~~aV~rga~~~~~i~dmPf~sy~ 89 (260)
T d1o66a_ 13 AGEKIAMLTAYESS---FAALMDDAGVEMLLVGDSLGMAVQGRKSTLPVSLRDMCYHTECVARGAKNAMIVSDLPFGAYQ 89 (260)
T ss_dssp HTCCEEEEECCSHH---HHHHHHHTTCCEEEECTTHHHHTTCCSSSTTCCHHHHHHHHHHHHHHCSSSEEEEECCTTSSS
T ss_pred CCCcEEEEeCCCHH---HHHHHHHcCCCEEEEcCCchheecCCCCccccchhhhhhhhHHHHccCcceeeecchhhhhhc
Confidence 45678888855544 445566778899999996 2222223334444444444444443 35568999997
Q ss_pred chhHHHHHH----HHcCCeEEE
Q 007238 175 RKSCGYLFA----IQHGAKKIF 192 (611)
Q Consensus 175 RKNiGYLyA----I~hGAe~Iy 192 (611)
-.+--++-| ++.||+-|.
T Consensus 90 ~~~~~~~~a~~~~~~~gadavk 111 (260)
T d1o66a_ 90 QSKEQAFAAAAELMAAGAHMVK 111 (260)
T ss_dssp SCHHHHHHHHHHHHHTTCSEEE
T ss_pred chhHHHHHHHHHHHHhhhhhcc
Confidence 765444443 467999774
No 4
>d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=20.58 E-value=58 Score=26.37 Aligned_cols=28 Identities=7% Similarity=0.005 Sum_probs=19.4
Q ss_pred chhHHHHHHHHcCC-----eEEEeecCCCcccC
Q 007238 175 RKSCGYLFAIQHGA-----KKIFDADDRGDVIG 202 (611)
Q Consensus 175 RKNiGYLyAI~hGA-----e~IydtDDDN~p~~ 202 (611)
.+|.|..-|..+|+ |+|.-+|||-.+..
T Consensus 64 ~~~~g~~~a~n~~~~~a~ge~i~~lD~D~~~~~ 96 (265)
T d1omza_ 64 PQTANKMRNRLQVFPEVETNAVLMVDDDTLISA 96 (265)
T ss_dssp ECSSCCGGGGGSCCTTCCSSEEEEECTTEEECH
T ss_pred cCCCCchhhhhhhHHhCCcCEEEEeCcccCCCH
Confidence 35555555555554 89999999987654
No 5
>d1m3ua_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Escherichia coli [TaxId: 562]}
Probab=18.48 E-value=29 Score=32.75 Aligned_cols=84 Identities=17% Similarity=0.250 Sum_probs=47.2
Q ss_pred CCCeEEEEEeccCCcHHHHhhhccCCeEEEEEeCCCCCCCCCCCCceeecHHHHh--------hcCCc-cccccCCCCcc
Q 007238 104 RSEKWIVVSVDRYPTDSLKKLVKIKGWQVLAIGNSRTPKNWNLKGAIFLSLDMQA--------NLGFR-VLDFLPYDSYV 174 (611)
Q Consensus 104 ~~~~wIVvTTI~~Pt~~v~~La~~~~W~lVVVgD~KTP~dw~l~~v~fLSve~Q~--------~L~f~-~~~~LP~~Sya 174 (611)
++++...+|.-++|+. +++...|-.++.|||+-.-.-+..++..=.++|+.. .-+-. ++.=+||.||.
T Consensus 13 ~g~ki~~lTayD~~~A---~~~~~agvDiiLVGDSlgmv~~G~~~T~~vt~d~mi~H~~aV~rga~~~~vv~DmPf~sy~ 89 (262)
T d1m3ua_ 13 EKKRFATITAYDYSFA---KLFADEGLNVMLVGDSLGMTVQGHDSTLPVTVADIAYHTAAVRRGAPNCLLLADLPFMAYA 89 (262)
T ss_dssp HTCCEEEEECCSHHHH---HHHHHHTCCEEEECTTHHHHTTCCSSSTTCCHHHHHHHHHHHHHHCTTSEEEEECCTTSSS
T ss_pred CCCcEEEEEcCCHHHH---HHHHHCCCCEEEEcCcHHhcccCCCCcceechHhHHHHHHHHHhccccceeEeccccccch
Confidence 4568888887777743 445556788999999521111122222223333333 22222 23347888875
Q ss_pred -----chhHHHHHHHHcCCeEEE
Q 007238 175 -----RKSCGYLFAIQHGAKKIF 192 (611)
Q Consensus 175 -----RKNiGYLyAI~hGAe~Iy 192 (611)
.||.+-| ++.||+-|+
T Consensus 90 ~~~~a~~~a~~l--~~~GAdaVK 110 (262)
T d1m3ua_ 90 TPEQAFENAATV--MRAGANMVK 110 (262)
T ss_dssp SHHHHHHHHHHH--HHTTCSEEE
T ss_pred hhHHHHHHHHHH--HhcCCcEEE
Confidence 3455433 589999984
No 6
>d1v54l_ f.23.6.1 (L:) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) {Cow (Bos taurus) [TaxId: 9913]}
Probab=15.16 E-value=79 Score=22.51 Aligned_cols=33 Identities=21% Similarity=0.457 Sum_probs=22.9
Q ss_pred CCCcccccchhcccchhhHHHHHHH---HHHHHHHHhhc
Q 007238 25 DSKSLDFSTWVRDNLFKIVTVLLLI---ATIAALSFLRN 60 (611)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 60 (611)
+-+||+|| .+|-.|+.....++ .-+++|+.+|-
T Consensus 6 PG~NLPFs---v~Nk~rLla~m~~~fGsgfa~PF~ivRh 41 (46)
T d1v54l_ 6 PGKNIPFS---VENKWRLLAMMTLFFGSGFAAPFFIVRH 41 (46)
T ss_dssp TTTSSSSC---CSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcc---chhHHHHHHHHHHHHhccccchHHHHHH
Confidence 45888887 47888887655443 34678888774
No 7
>d1qg8a_ c.68.1.1 (A:) Spore coat polysaccharide biosynthesis protein SpsA {Bacillus subtilis [TaxId: 1423]}
Probab=13.83 E-value=40 Score=29.11 Aligned_cols=88 Identities=10% Similarity=0.128 Sum_probs=48.3
Q ss_pred EEEEEeccCCcHHHHhh----h--ccCCeEEEEEeCCCCCCCCCCCCceeecHHHHhhcCCccccc-cCCCCccchhHHH
Q 007238 108 WIVVSVDRYPTDSLKKL----V--KIKGWQVLAIGNSRTPKNWNLKGAIFLSLDMQANLGFRVLDF-LPYDSYVRKSCGY 180 (611)
Q Consensus 108 wIVvTTI~~Pt~~v~~L----a--~~~~W~lVVVgD~KTP~dw~l~~v~fLSve~Q~~L~f~~~~~-LP~~SyaRKNiGY 180 (611)
-||+++-|.+ ..+++. . ..+.|.++||=|-.|...+. .|. +.++...+++... ...-...-+|.|+
T Consensus 4 Siiip~yN~~-~~l~~~l~Si~~Qt~~~~eiivvdd~S~d~t~~-----~l~-~~~~~~~i~~~~~~~~~~~~~~~~~g~ 76 (255)
T d1qg8a_ 4 SVIMTSYNKS-DYVAKSISSILSQTFSDFELFIMDDNSNEETLN-----VIR-PFLNDNRVRFYQSDISGVKERTEKTRY 76 (255)
T ss_dssp EEEEEESSCT-TTHHHHHHHHHTCSCCCEEEEEEECSCCHHHHH-----HHG-GGGGSTTEEEEECCCCSHHHHHSSCHH
T ss_pred EEEEecCCCH-HHHHHHHHHHHhCCCCCeEEEEEECCCCccHHH-----HHH-Hhhhhcccccccccccccccccccchh
Confidence 4788877776 444443 2 25789999998866554321 111 1112222222211 0011222367777
Q ss_pred HHHHHcC-----CeEEEeecCCCcccC
Q 007238 181 LFAIQHG-----AKKIFDADDRGDVIG 202 (611)
Q Consensus 181 LyAI~hG-----Ae~IydtDDDN~p~~ 202 (611)
-.|...| .++|.-+|+|..+..
T Consensus 77 ~~a~N~gi~~a~g~~i~~lD~Dd~~~p 103 (255)
T d1qg8a_ 77 AALINQAIEMAEGEYITYATDDNIYMP 103 (255)
T ss_dssp HHHHHHHHHHCCCSEEEEEETTEEECT
T ss_pred ccccccccccccccccccccccccccc
Confidence 6665544 579999999988754
No 8
>d3cu0a1 c.68.1.7 (A:75-335) 1,3-Glucuronyltransferase I (glcAT-I) {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.60 E-value=2e+02 Score=26.84 Aligned_cols=11 Identities=27% Similarity=0.389 Sum_probs=9.7
Q ss_pred eEEEeecCCCc
Q 007238 189 KKIFDADDRGD 199 (611)
Q Consensus 189 e~IydtDDDN~ 199 (611)
=++|.+||||.
T Consensus 114 GVVyFADDdNt 124 (261)
T d3cu0a1 114 GVVYFADDDNT 124 (261)
T ss_dssp EEEEECCTTSE
T ss_pred eEEEEecCCCc
Confidence 68999999994
No 9
>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.09 E-value=2.2e+02 Score=23.72 Aligned_cols=65 Identities=20% Similarity=0.099 Sum_probs=37.9
Q ss_pred CchhhhHHHhhhHHHHHhccccC---CccCHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHhcCCCCCc
Q 007238 386 FSEEKDLHVNVGRLIKFLVSWRS---NKHRFFEKVLELSHSMAEEGFWTERDVKFTAAWLQDLIAVGYQQPR 454 (611)
Q Consensus 386 F~dE~~ly~~sg~lv~fL~~W~~---~~~~l~e~i~~L~~~l~e~gfw~~~Dv~l~~aWL~DL~~vGy~~P~ 454 (611)
|..|+---+-.++|++.+..=.. .....-+++++|....++. | .+...+..=-+.|++-||.||.
T Consensus 74 F~~evask~Fl~~l~kli~~k~~~~~~~~~Vk~kil~ll~~Wa~~-f---~~~~~~~~~Y~~Lk~~Gv~fp~ 141 (151)
T d1juqa_ 74 FHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMA-L---PEEAKIKDAYHMLKRQGIVQSD 141 (151)
T ss_dssp HHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHH-C---TTCHHHHHHHHHHHHTTSCSSC
T ss_pred HHHHHhhHHHHHHHHHHHcccCCCCcccHHHHHHHHHHHHHHHHH-c---cccHHHHHHHHHHHHcCCCCCC
Confidence 55555444444555555543211 1223667888887777653 4 2344444446789999999974
No 10
>d2ajta1 b.43.2.2 (A:329-498) L-arabinose isomerase AraA {Escherichia coli [TaxId: 562]}
Probab=9.87 E-value=1.2e+02 Score=26.71 Aligned_cols=66 Identities=12% Similarity=0.273 Sum_probs=44.6
Q ss_pred CCCCCCCCeeeecccCCCccCCCcccccCCCeEEEEEeccCCcHHHHhhhccCCeEEEEEeCCCCCCC
Q 007238 76 SPNAIPLPVINWNSIQPIADKSSVYSRFRSEKWIVVSVDRYPTDSLKKLVKIKGWQVLAIGNSRTPKN 143 (611)
Q Consensus 76 ~~~~~~~p~~~~~~i~~~~~~~~~~~~~~~~~wIVvTTI~~Pt~~v~~La~~~~W~lVVVgD~KTP~d 143 (611)
.++ +|-.+..|+.-|....-..-.-..-+...-|++ .+.-.+.++.+|++-|-.+|||+...|..+
T Consensus 91 lp~-lpvar~~w~p~p~l~~~~~aWi~AGgaHHtvls-~g~~~~~l~d~A~~~gIE~v~I~~~t~~~~ 156 (170)
T d2ajta1 91 LPK-LPVANALWKAQPDLPTASEAWILAGGAHHTVFS-HALNLNDMRQFAEMHDIEITVIDNDTRLPA 156 (170)
T ss_dssp CTT-CCSCBEEEEESSCHHHHHHHHHHTCCCSEEEEE-SSCCHHHHHHHHHHTTCEEEEESTTCCHHH
T ss_pred cCC-CcceeEEEeeCCCHHHHHHHHHHcCCCCeEEEE-eccCHHHHHHHHHHhCCEEEEECCCCCHHH
Confidence 344 666888898766542110001133445666777 556779999999999999999998776654
Done!