BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007242
(611 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DF4|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Mn2+
pdb|2DQN|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Asn
pdb|2G5H|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
pdb|2G5I|A Chain A, Structure Of Trna-dependent Amidotransferase Gatcab
Complexed With Adp-alf4
pdb|3IP4|A Chain A, The High Resolution Structure Of Gatcab
pdb|2F2A|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Gln
Length = 485
Score = 173 bits (439), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 137/470 (29%), Positives = 222/470 (47%), Gaps = 44/470 (9%)
Query: 150 ITPRMVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRYKKGEPISVLDGVLI 209
I P V + A+ E+ +P +K F+ ++E+ +K+A E K + L G+ +
Sbjct: 20 IKPSDVVKDIYDAIEET-DPTIKS--FLALDKENAIKKAQELDELQAKDQMDGKLFGIPM 76
Query: 210 AVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGIN 269
+KD I + TT +K L P ++ + +L A+L+GK NM E G S
Sbjct: 77 GIKDNIITNGLETTCASKMLEGFVPIY-ESTVMEKLHKENAVLIGKLNMDEFAMGGSTET 135
Query: 270 PHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTF 329
++ NP+D + L P++LG D GGS+R PAA CGVVG KPT+
Sbjct: 136 SYFKKTVNPFDHKAVPGGSSGGSAAAVAAGLVPLSLGSDTGGSIRQPAAYCGVVGMKPTY 195
Query: 330 GRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSAT 389
GR+ G++ ++ +G L V+D +V AI+G + + + V F +
Sbjct: 196 GRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLEAISGADVNDSTSAPVDDVDFT-SEIGK 254
Query: 390 SISAIKLAKYDAWFND-CSDDIRVCCSRAVDKLCERYGWKVVEVTIPNIEVMRLAHYLTI 448
I +K+A + + +DD++ AV+ L + G V EV++PN + ++Y+
Sbjct: 255 DIKGLKVALPKEYLGEGVADDVKEAVQNAVETL-KSLGAVVEEVSLPNTKFGIPSYYVIA 313
Query: 449 GSECSTSLSSY-----------------LQKINCSDQGWDARVALSVY-GSFSSQE---- 486
SE S++LS + L K++ S +G+ V ++ G+F+
Sbjct: 314 SSEASSNLSRFDGIRYGYHSKEAHSLEELYKMSRS-EGFGKEVKRRIFLGTFALSSGYYD 372
Query: 487 --YIKAQKIRNHQMQIHRNVFAKADVIVVPTTGVTAYEIK---DDALKTGELDYIYGAAL 541
Y K+QK+R VF DV+V PT TA+ + DD L +Y L
Sbjct: 373 AYYKKSQKVRTLIKNDFDKVFENYDVVVGPTAPTTAFNLGEEIDDPLT------MYANDL 426
Query: 542 VRYQIAGNFLGLPAVTVPVGYDTAGLPIGLQFIGKPWSEPTLMHIAFAMQ 591
+ + N GLP ++VP G + G PIGLQFIGKP+ E TL +A+ +
Sbjct: 427 LTTPV--NLAGLPGISVPCG-QSNGRPIGLQFIGKPFDEKTLYRVAYQYE 473
>pdb|3H0L|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|D Chain D, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|G Chain G, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|J Chain J, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|M Chain M, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|P Chain P, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|S Chain S, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|V Chain V, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|D Chain D, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|G Chain G, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|J Chain J, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|M Chain M, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|P Chain P, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|S Chain S, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|V Chain V, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|D Chain D, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|G Chain G, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|J Chain J, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|M Chain M, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|P Chain P, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|S Chain S, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|V Chain V, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
Length = 478
Score = 160 bits (405), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 128/468 (27%), Positives = 218/468 (46%), Gaps = 48/468 (10%)
Query: 148 GDITPRMVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRYKKGEPISVLDGV 207
G+++P+ V E F ++ K+ +I LKQA +L+ ++ L G+
Sbjct: 17 GEVSPKEVVESFYDRYNQTEE---KVKAYITPLYGKALKQA--ESLKERE----LPLFGI 67
Query: 208 LIAVKDEIDCSPYPTTGGTKWLHK-VRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTS 266
IAVKD I TT +K L V P DA + RL+ GA++VGKTN+ E G+S
Sbjct: 68 PIAVKDNILVEGEKTTCASKILENFVAPY--DATVIERLKKAGALIVGKTNLDEFAMGSS 125
Query: 267 GINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFK 326
+ +NP+D ++ PV+LG D GGS+R PA+ CGV+G K
Sbjct: 126 TEYSAFFPTKNPWDLERVPGGSSGGSAASVAVLSAPVSLGSDTGGSIRQPASFCGVIGIK 185
Query: 327 PTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING--PLPSQQPTVSLPKVSFPL 384
PT+GR+ G++ ++ +G+ ED +V I+G S V +P+ S +
Sbjct: 186 PTYGRVSRYGLVAFASSLDQIGVFGRRTEDVALVLEVISGWDEKDSTSAKVPVPEWSEEV 245
Query: 385 LKSATSISAIKLAKYDAWFN-DCSDDIRVCCSRAVDKLCERYGWKVVEVTIPNIEVMRLA 443
K + +K+ +F + ++ + +L E+ G+++ EV++P+++
Sbjct: 246 KK---EVKGLKIGLPKEFFEYELQPQVKEAFENFIKEL-EKEGFEIKEVSLPHVKYSIPT 301
Query: 444 HYLTIGSECSTSLSSY----------------LQKINCSDQGWDARVALSVY-GSFS--- 483
+Y+ SE S++L+ Y D+G+ V + G+F+
Sbjct: 302 YYIIAPSEASSNLARYDGVRYGYRAKEYKDIFEMYARTRDEGFGPEVKRRIMLGTFALSA 361
Query: 484 ---SQEYIKAQKIRNHQMQIHRNVFAKADVIVVPTTGVTAYEIKDDALKTGELDYIYGAA 540
Y+KAQK+R F + DVI PTT ++ + E+ Y +
Sbjct: 362 GYYDAYYLKAQKVRRLITNDFLKAFEEVDVIASPTTPTLPFKFGERLENPIEM---YLSD 418
Query: 541 LVRYQIAGNFLGLPAVTVPVGYDTAGLPIGLQFIGKPWSEPTLMHIAF 588
++ + N GLPA+++P+ + GLP+G Q IGK W E TL+ I++
Sbjct: 419 IL--TVPANLAGLPAISIPIAWKD-GLPVGGQLIGKHWDETTLLQISY 463
>pdb|3AL0|A Chain A, Crystal Structure Of The Glutamine Transamidosome From
Thermotoga Maritima In The Glutamylation State
Length = 475
Score = 151 bits (382), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 117/411 (28%), Positives = 199/411 (48%), Gaps = 38/411 (9%)
Query: 206 GVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGT 265
G+ +A+KD I TT ++ L DA V +++ G ++VGK N+ E G+
Sbjct: 60 GIPVAIKDNILTLGMRTTCASRILENYESVF-DATVVKKMKEAGFVVVGKANLDEFAMGS 118
Query: 266 SGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGF 325
S + RNP+D ++ + ALG D GGSVR PA+LCGVVG+
Sbjct: 119 STERSAFFPTRNPWDLERVPGGSSGGSAAAVSAGMVVAALGSDTGGSVRQPASLCGVVGY 178
Query: 326 KPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLL 385
KPT+G + G++ ++ +G + TV DA ++ I+G + TV+ KV F L
Sbjct: 179 KPTYGLVSRYGLVAFASSLDQIGPITKTVRDAAILMEIISGRDENDATTVN-RKVDF-LS 236
Query: 386 KSATSISAIKLA-KYDAWFNDCSDDIRVCCSRAVDKLCERYGWKVVEVTIPNIEVMRLAH 444
+ +S +K A + + +D + + A+ KL ER G KV V IP+I+ +
Sbjct: 237 EIEEGVSGMKFAVPEEIYEHDIEEGVSERFEEAL-KLLERLGAKVERVKIPHIKYSVATY 295
Query: 445 YLTIGSECSTSLSSY-------------LQK--INCSDQGWDARVALSVY-GSFS----- 483
Y+ +E S++L+ + L++ + + G+ V + G+F+
Sbjct: 296 YVIAPAEASSNLARFDGVKYGLRIKEKGLREMYMKTRNVGFGEEVRRRIMIGTFTLSAAY 355
Query: 484 -SQEYIKAQKIRNHQMQIHRNVFAKADVIVVPTTGVTAYEIKD--DALKTGELDYIYGAA 540
+ KA K+R V ++ D I+ PT+ VTA++I + D L +D
Sbjct: 356 YEAYFNKAMKVRRKISDELNEVLSQYDAILTPTSPVTAFKIGEIKDPLTYYLMDI----- 410
Query: 541 LVRYQIAGNFLGLPAVTVPVGYDTAGLPIGLQFIGKPWSEPTLMHIAFAMQ 591
+ I N GLPA++VP G+ + LP+G+Q IG+ +++ + IA A++
Sbjct: 411 ---FTIPANLAGLPAISVPFGF-SNNLPVGVQVIGRRFADGKVFRIARAIE 457
>pdb|3KFU|E Chain E, Crystal Structure Of The Transamidosome
pdb|3KFU|H Chain H, Crystal Structure Of The Transamidosome
Length = 471
Score = 147 bits (372), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 130/472 (27%), Positives = 218/472 (46%), Gaps = 53/472 (11%)
Query: 146 SSGDITPRMVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRYKKGEPISVLD 205
+ G+++P VA+ ++ V+E + F++ NE +L++A + +P L
Sbjct: 11 ARGEVSPLEVAQAYLKRVQELDP---GLGAFLSLNER-LLEEA-------EAVDPGLPLA 59
Query: 206 GVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGT 265
G+++AVKD I TT G++ L P +A V RL+ GA+++GKTN+ E G G+
Sbjct: 60 GLVVAVKDNIATRGLRTTAGSRLLENFVPPY-EATAVARLKALGALVLGKTNLDEFGMGS 118
Query: 266 SGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGF 325
S + + +NP+DP ++ L P+ALG D GGSVR PAA CGV G
Sbjct: 119 STEHSAFFPTKNPFDPDRVPGGSSGGSAAALAADLAPLALGSDTGGSVRQPAAFCGVYGL 178
Query: 326 KPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLL 385
KPT+GR+ G++ ++ +G +A +V D ++ A GP P ++ LP P
Sbjct: 179 KPTYGRVSRFGLIAYASSLDQIGPMARSVRDLALLMDAAAGPDPLDATSLDLP----PRF 234
Query: 386 KSATS--ISAIKLAKYDAWFNDCSDDIRVCCSRAVDKLCERYGWKVVEVTIPNIEVMRLA 443
+ A + ++L S + A+ K+ G V EV+ P++ A
Sbjct: 235 QEALEGPLPPLRLGVVREALAGNSPGVERALEEAL-KVFRELGLSVREVSWPSLPQALAA 293
Query: 444 HYLTIGSECSTSLSSY----------LQKINCSDQGWDARVALSV-----YGSFSSQE-- 486
+Y+ +E S++L+ Y +++ + A L V G+F
Sbjct: 294 YYILAPAEASSNLARYDGTLYGRRAAGEEVEGMMEATRALFGLEVKRRVLVGTFVLSSGY 353
Query: 487 ----YIKAQKIRNHQMQIHRNVFAKADVIVVPTTGVTAYEI--KDDALKTGELDYIYGAA 540
Y +AQ R + +F + D++++PTT A+ + D L D
Sbjct: 354 YEAYYGRAQAFRRRLKAEAQALFREVDLLLLPTTPHPAFPFGARRDPLAMYREDL----- 408
Query: 541 LVRYQIAGNFLGLPAVTVPVGYDTAGLPIGLQFIGKPWSE-PTLMHIAFAMQ 591
Y + N GLPA++ P G++ LP+GLQ + PW E L+ A A +
Sbjct: 409 ---YTVGANLTGLPALSFPAGFE-GHLPVGLQLLA-PWGEDERLLRAALAFE 455
>pdb|2GI3|A Chain A, Crystal Structure Of Glutamyl-Trna(Gln) Amidotransferase
Subunit A (Tm1272) From Thermotoga Maritima At 1.80 A
Resolution
Length = 476
Score = 144 bits (364), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 117/412 (28%), Positives = 192/412 (46%), Gaps = 40/412 (9%)
Query: 206 GVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGT 265
G+ +A+KD I TT ++ L DA V + + G ++VGK N+ E G+
Sbjct: 61 GIPVAIKDNILTLGXRTTCASRILENYESVF-DATVVKKXKEAGFVVVGKANLDEFAXGS 119
Query: 266 SGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGF 325
S + RNP+D ++ ALG D GGSVR PA+LCGVVG+
Sbjct: 120 STERSAFFPTRNPWDLERVPGGSSGGSAAAVSAGXVVAALGSDTGGSVRQPASLCGVVGY 179
Query: 326 KPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLL 385
KPT+G + G++ ++ +G + TV DA ++ I+G + TV+ KV F L
Sbjct: 180 KPTYGLVSRYGLVAFASSLDQIGPITKTVRDAAILXEIISGRDENDATTVNR-KVDF-LS 237
Query: 386 KSATSISAIKLA-KYDAWFNDCSDDIRVCCSRAVDKLCERYGWKVVEVTIPNIEVMRLAH 444
+ +S K A + + +D + + A+ KL ER G KV V IP+I+ +
Sbjct: 238 EIEEGVSGXKFAVPEEIYEHDIEEGVSERFEEAL-KLLERLGAKVERVKIPHIKYSVATY 296
Query: 445 YLTIGSECSTSLSSY-----------------LQKINCSDQGWDARVALSVYGSFS---- 483
Y+ +E S++L+ + K G + R + + G+F+
Sbjct: 297 YVIAPAEASSNLARFDGVKYGLRIKEKGLREXYXKTRNVGFGEEVRRRIXI-GTFTLSAA 355
Query: 484 --SQEYIKAQKIRNHQMQIHRNVFAKADVIVVPTTGVTAYEIKD--DALKTGELDYIYGA 539
+ KA K+R V ++ D I+ PT+ VTA++I + D L D
Sbjct: 356 YYEAYFNKAXKVRRKISDELNEVLSQYDAILTPTSPVTAFKIGEIKDPLTYYLXDI---- 411
Query: 540 ALVRYQIAGNFLGLPAVTVPVGYDTAGLPIGLQFIGKPWSEPTLMHIAFAMQ 591
+ I N GLPA++VP G+ + LP+G+Q IG+ +++ + IA A++
Sbjct: 412 ----FTIPANLAGLPAISVPFGF-SNNLPVGVQVIGRRFADGKVFRIARAIE 458
>pdb|1M21|A Chain A, Crystal Structure Analysis Of The Peptide Amidase Pam In
Complex With The Competitive Inhibitor Chymostatin
pdb|1M21|B Chain B, Crystal Structure Analysis Of The Peptide Amidase Pam In
Complex With The Competitive Inhibitor Chymostatin
pdb|1M22|A Chain A, X-Ray Structure Of Native Peptide Amidase From
Stenotrophomonas Maltophilia At 1.4 A
pdb|1M22|B Chain B, X-Ray Structure Of Native Peptide Amidase From
Stenotrophomonas Maltophilia At 1.4 A
Length = 503
Score = 123 bits (309), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 136/512 (26%), Positives = 216/512 (42%), Gaps = 54/512 (10%)
Query: 127 SEKQPF-FHRWTVLDYSKAYSSGDITPRMVAERFIA--AVRESSNPPMKMSFFINYNEED 183
S PF + V D ++G++ + + ++ A + + P ++ +N D
Sbjct: 1 SRNVPFPYAETDVADLQARMTAGELDSTTLTQAYLQRIAALDRTGPRLRAVIELN---PD 57
Query: 184 ILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVM 243
LK+A E + G L G+ + +KD I+ +P T+ G+ L RP DA V
Sbjct: 58 ALKEAAERDRERRDGRLRGPLHGIPLLLKDNINAAPMATSAGSLALQGFRP--DDAYLVR 115
Query: 244 RLRLCGAILVGKTNMHELGA-----GTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXX 298
RLR GA+++GKTN+ E SG + G RNPY S
Sbjct: 116 RLRDAGAVVLGKTNLSEWANFRGNDSISGWSARGGQTRNPYRISHSPCGSSSGSAVAVAA 175
Query: 299 XLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDAL 358
L VA+G + GS+ PAA+ GVVG KPT G + G++P++++ G +A +V DA
Sbjct: 176 NLASVAIGTETDGSIVCPAAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMARSVADAA 235
Query: 359 VVYAAINGPLPSQQPTVSLPKVSF--------PLLKSATSISAIK--LAKYDAW---FND 405
V AI G + T ++P + P I ++ L KY
Sbjct: 236 AVLTAIAGRDDADPATATMPGRAVYDYTARLDPQGLRGKRIGLLQTPLLKYRGMPPLIEQ 295
Query: 406 CSDDIRVCCSRAVD-KLCERYGWKVVEVTIPNIEVMR-LAHYLTIGSECSTSLSSYL--- 460
+ ++R + V +L + W E T+ E L Y SL+ +
Sbjct: 296 AATELRRAGAVVVPVELPNQGAWAEAERTLLLYEFKAGLERYFNTHRAPLRSLADLIAFN 355
Query: 461 ---QKINCSDQGWDARVALSVYGSFSSQEYIKAQKIRNHQMQIHRNVFA-----KADVIV 512
K G + V + YI+A+ ++ + A + D +V
Sbjct: 356 QAHSKQELGLFGQELLVEADATAGLADPAYIRARS-DARRLAGPEGIDAALAAHQLDALV 414
Query: 513 VPTTGVTAYEIKDDALKTGELDYIYGAALVRYQIAGNFLGLPAVTVPVGYDTAGLPIGLQ 572
PTTGV A+ I+ E D G + +A G P++TVP+G GLP+GL
Sbjct: 415 APTTGV-AWPIRS------EGDDFPGESYSAAAVA----GYPSLTVPMG-QIDGLPVGLL 462
Query: 573 FIGKPWSEPTLMHIAFAMQALCISEFRKPKVF 604
F+G WSEP L+ +A+A + + R+P F
Sbjct: 463 FMGTAWSEPKLIEMAYAYEQR--TRARRPPHF 492
>pdb|2DC0|A Chain A, Crystal Structure Of Amidase
pdb|2DC0|B Chain B, Crystal Structure Of Amidase
Length = 434
Score = 120 bits (300), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 114/448 (25%), Positives = 188/448 (41%), Gaps = 46/448 (10%)
Query: 138 VLDYSKAYSSGDITPRMVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRYKK 197
+L+ + +G TP + E + E + + +EE K+A T ++
Sbjct: 3 LLEAKRLLETGRTTPLALLEEAL----ERAKAFQDRNALAYLDEEAARKEALALTEELRR 58
Query: 198 GEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTN 257
G+ L G+ + VKD PT GTK + P +A V RLR GA+L KTN
Sbjct: 59 GQVRGPLHGLPLTVKDLFPVKGMPTRAGTKA--PLPPLPEEARAVRRLREAGALLFAKTN 116
Query: 258 MHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPA 317
HE+ G +G NP G RN DPS+ + +LG D GGS+R+PA
Sbjct: 117 XHEIALGITGENPWTGPVRNAVDPSRQAGGSSGGSAVAVALGIGLASLGTDTGGSIRIPA 176
Query: 318 ALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSL 377
GVVGFKP++GR+ L G LPL+ + G L +V DA + + G
Sbjct: 177 GFNGVVGFKPSYGRVSLEGALPLSRSTDHAGPLTRSVRDAHFLTEILAGE---------- 226
Query: 378 PKVSFPLLKSATSISAIKLAKYDAWFNDCSDDIRVCCSRAVDKLCERYGWKVVEVTIPNI 437
S PL + + L D ++R +R ++ L +V EV++P
Sbjct: 227 ---SIPLEGVQNPVFGVPL---DFLEGRLGVEVRKAFTRLLEDLPALRA-EVREVSLPLE 279
Query: 438 EV----MRLAHYLTIGSECSTSLSSYLQKINCSDQGW--DARVALSVYGSFSSQEYIKA- 490
V RL Y + + + + +G+ R AL + + ++Y A
Sbjct: 280 GVYEVYTRLVRY--------EAARIHEKALKEHPEGFSPQVREALLAGLALTEKDYRDAV 331
Query: 491 ---QKIRNHQMQIHRNVFAKADVIVVPTTGVTAYEIKDDALKTGELDYIYGAALVRYQIA 547
+ +R ++ R V D +++P + A + + ++ + A + +
Sbjct: 332 AEREALRLELVKALRGV----DALLLPVQPLPAPPLGTEEVELESGRKGHREAFITLTLP 387
Query: 548 GNFLGLPAVTVPVGYDTAGLPIGLQFIG 575
+ LG+P + +P G P+GLQ +G
Sbjct: 388 FSLLGVPTLALPFA-KVEGXPVGLQVVG 414
>pdb|3A1K|A Chain A, Crystal Structure Of Rhodococcus Sp. N771 Amidase
Length = 521
Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 109/427 (25%), Positives = 171/427 (40%), Gaps = 49/427 (11%)
Query: 203 VLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELG 262
VL G +A+KD + + P G++ + P DA V RL GA + GK +L
Sbjct: 87 VLTGRRVAIKDNVTVAGVPMMNGSRTVEGFTPSR-DATVVTRLLAAGATVAGKAVCEDLC 145
Query: 263 AGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGV 322
S P G RNP+D + A+G D GGS+R+PAA CGV
Sbjct: 146 FSGSSFTPASGPVRNPWDRQREAGGSSGGSAALVANGDVDFAIGGDQGGSIRIPAAFCGV 205
Query: 323 VGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDA---LVVYAAINGPLPSQQPTVSLPK 379
VG KPTFG +P +G P+ T+ +G + TV DA L V A +G P Q +V
Sbjct: 206 VGHKPTFGLVPYTGAFPIERTIDHLGPITRTVHDAALMLSVIAGRDGNDPRQADSVEAGD 265
Query: 380 VSFPLLKSATSISAIKLAKYDAWFNDCSDDIRVCCS-RAVDKLCERYGWKVVEVTIPNIE 438
L + + +++ F V + RA G V EV IP
Sbjct: 266 Y---LSTLDSDVDGLRIGIVREGFGHAVSQPEVDDAVRAAAHSLTEIGCTVEEVNIP--- 319
Query: 439 VMRLAHYLTIGSECSTSLSSYLQKINCSDQGWDAR------------------------- 473
H I + +T +Y Q ++ + G +A
Sbjct: 320 --WHLHAFHIWNVIATDGGAY-QMLDGNGYGMNAEGLYDPELMAHFASRRIQHADALSET 376
Query: 474 ---VALSVYGSFSS---QEYIKAQKIRNHQMQIHRNVFAKADVIVVPTTGVTAYEIKDDA 527
VAL+ + ++ Y KA+ + + + DV+V+PT A E+ A
Sbjct: 377 VKLVALTGHHGITTLGGASYGKARNLVPLARAAYDTALRQFDVLVMPTLPYVASELP--A 434
Query: 528 LKTGELDYIYGA-ALVRYQIAGNFLGLPAVTVPVGYDTAGLPIGLQFIGKPWSEPTLMHI 586
+I A ++ + G P+++VP G GLP+G+ G+ + + T++ +
Sbjct: 435 KDVDRATFITKALGMIANTAPFDVTGHPSLSVPAGL-VNGLPVGMMITGRHFDDATVLRV 493
Query: 587 AFAMQAL 593
A + L
Sbjct: 494 GRAFEKL 500
>pdb|3A1I|A Chain A, Crystal Structure Of Rhodococcus Sp. N-771 Amidase
Complexed With Benzamide
Length = 521
Score = 106 bits (264), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 108/427 (25%), Positives = 171/427 (40%), Gaps = 49/427 (11%)
Query: 203 VLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELG 262
VL G +A+KD + + P G++ + P DA V RL GA + GK +L
Sbjct: 87 VLTGRRVAIKDNVTVAGVPMMNGSRTVEGFTPSR-DATVVTRLLAAGATVAGKAVCEDLC 145
Query: 263 AGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGV 322
S P G RNP+D + A+G D GG++R+PAA CGV
Sbjct: 146 FSGSSFTPASGPVRNPWDRQREAGGSSGGSAALVANGDVDFAIGGDQGGAIRIPAAFCGV 205
Query: 323 VGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDA---LVVYAAINGPLPSQQPTVSLPK 379
VG KPTFG +P +G P+ T+ +G + TV DA L V A +G P Q +V
Sbjct: 206 VGHKPTFGLVPYTGAFPIERTIDHLGPITRTVHDAALMLSVIAGRDGNDPRQADSVEAGD 265
Query: 380 VSFPLLKSATSISAIKLAKYDAWFNDCSDDIRVCCS-RAVDKLCERYGWKVVEVTIPNIE 438
L + + +++ F V + RA G V EV IP
Sbjct: 266 Y---LSTLDSDVDGLRIGIVREGFGHAVSQPEVDDAVRAAAHSLTEIGCTVEEVNIP--- 319
Query: 439 VMRLAHYLTIGSECSTSLSSYLQKINCSDQGWDAR------------------------- 473
H I + +T +Y Q ++ + G +A
Sbjct: 320 --WHLHAFHIWNVIATDGGAY-QMLDGNGYGMNAEGLYDPELMAHFASRRIQHADALSET 376
Query: 474 ---VALSVYGSFSS---QEYIKAQKIRNHQMQIHRNVFAKADVIVVPTTGVTAYEIKDDA 527
VAL+ + ++ Y KA+ + + + DV+V+PT A E+ A
Sbjct: 377 VKLVALTGHHGITTLGGASYGKARNLVPLARAAYDTALRQFDVLVMPTLPYVASELP--A 434
Query: 528 LKTGELDYIYGA-ALVRYQIAGNFLGLPAVTVPVGYDTAGLPIGLQFIGKPWSEPTLMHI 586
+I A ++ + G P+++VP G GLP+G+ G+ + + T++ +
Sbjct: 435 KDVDRATFITKALGMIANTAPFDVTGHPSLSVPAGL-VNGLPVGMMITGRHFDDATVLRV 493
Query: 587 AFAMQAL 593
A + L
Sbjct: 494 GRAFEKL 500
>pdb|3A2P|A Chain A, Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolase
Length = 493
Score = 88.6 bits (218), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 101/416 (24%), Positives = 164/416 (39%), Gaps = 78/416 (18%)
Query: 238 DACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXX 297
DA V R+R G +L+GKTN E+G + +G RNP++ +
Sbjct: 100 DAYFVQRMRAAGFVLLGKTNTPEMGNQVTTEPEAWGATRNPWNLGRSVGGSSGGSGAAVA 159
Query: 298 XXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRI-PLSGVLPLNWTVGMV--GILAATV 354
L PVA G D GSVR+PA++CGVVG KPT GRI P V + G G+ A +V
Sbjct: 160 AALSPVAHGNDAAGSVRIPASVCGVVGLKPTRGRISPGPLVTDSDNVAGAAHEGLFARSV 219
Query: 355 EDALVVYAAINGPLPSQQ---PTVSLPKVS---------------------FPLLKSATS 390
D + ++G P PT S P F L +
Sbjct: 220 RDIAALLDVVSGHRPGDTFCAPTASRPYAQGISENPGSLRVGVLTHNPVGDFALDPECAA 279
Query: 391 ISAIKLAKYDAWFNDCSD-------------DIRVCCSRAVDKLCERYGWKVV------E 431
+ A A +D +D D C A+ + ER G + +
Sbjct: 280 AARGAAAALAALGHDVNDAYPEALGDRSFLKDYSTICDVAIAREIERNGELIGRPLTEDD 339
Query: 432 VTIPNIEVMRLAHYLT--IGSECSTSLSSYLQKINCSDQGWDARVALSVYGSFSSQEYIK 489
V + E+++ A +T + C L Y K+ ++ W+A L + + + Q
Sbjct: 340 VEWTSWEMVKRADQVTGRAFAACVDELRYYAGKV---ERWWEAGWDLLILPTVTRQ---- 392
Query: 490 AQKIRNHQMQIHRNVFAKADVIVVPTTGVTAYEIKDDALKTGELDYIYGAALVRYQIAGN 549
+I + AK T E + A +G L ++ + + N
Sbjct: 393 -------TPEIGELMLAKG----------TDLEGRQSAFISGSLQ------MLAFTVPFN 429
Query: 550 FLGLPAVTVPVGYDTAGLPIGLQFIGKPWSEPTLMHIAFAMQALCISEFRKPKVFH 605
G PA+++P+G + G+PIG+Q + E L+ +A ++ R+P++ +
Sbjct: 430 VSGQPAISLPIGMSSDGMPIGVQIVAAYGREDLLLQVAAQLEGALPWVARRPQLLN 485
>pdb|4GYR|A Chain A, Granulibacter Bethesdensis Allophanate Hydrolase Apo
pdb|4GYR|B Chain B, Granulibacter Bethesdensis Allophanate Hydrolase Apo
pdb|4GYS|A Chain A, Granulibacter Bethesdensis Allophanate Hydrolase
Co-crystallized With Malonate
pdb|4GYS|B Chain B, Granulibacter Bethesdensis Allophanate Hydrolase
Co-crystallized With Malonate
Length = 621
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 103/416 (24%), Positives = 170/416 (40%), Gaps = 34/416 (8%)
Query: 181 EEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDAC 240
E++L +A G+P L GV AVKD ID + P + P DA
Sbjct: 75 REEVLAEARALDASPATGKP---LYGVPFAVKDNIDVAGLPCSAACPAF-TYEP-DRDAT 129
Query: 241 CVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXL 300
V RLR GAI++GKTN+ + G G +G R +D I+ L
Sbjct: 130 VVARLRAAGAIVLGKTNLDQFATGLVGTRSPFGAPRCVFDQDYISGGSSSGSAVAVAAGL 189
Query: 301 CPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVV 360
+LG D GS R+PAA +VG KPT G + SGV+P ++ V + AA+V + ++
Sbjct: 190 VAFSLGTDTAGSGRVPAAFNNLVGVKPTKGLLSTSGVVPACRSLDCVTVFAASVAEGTLI 249
Query: 361 YAAING-------PLPSQQPTVSLPKVSFPLLKSATSISAIKLAKYDAWFNDCSDDIRVC 413
G PSQ+ LP V + + + + + N
Sbjct: 250 RRIAEGYDAADPYSRPSQK--RRLPHVGL-------RVGVPRQDQREFYGNTA---YAAL 297
Query: 414 CSRAVDKLCERYGWKVVEVTIPNIEVMRLAHYLTIGSECSTSLSSYLQKINCSDQGWD-- 471
RA+D++ ++VE+ A L G + L + ++ + +D
Sbjct: 298 YQRALDEMIS-LDAELVEIDFAPFR--DAAKLLYGGPWVAERLEAVGDHLSRAPDSFDPV 354
Query: 472 ARVALSVYGSFSSQEYIKAQKIRNHQMQIHRNVFAKADVIVVPTTGVTAYEIKDDALKTG 531
R + + S+ + + Q Q +A+ D++++P T T ++++
Sbjct: 355 VRSIVETAKTLSAVDAFRGQYELAALTQQANAQWARMDILLLP-TAPTIHKVEAVMADPV 413
Query: 532 ELDYIYGAALVRYQIAGNFLGLPAVTVPVGYDTAGLPIGLQFIGKPWSEPTLMHIA 587
L+ G Y N L A+ VP G+ GLP G+ +G +S+ ++ IA
Sbjct: 414 RLNSQLG----HYTNFVNLLDCAAIAVPAGFIETGLPFGVTLVGPAFSDDSMALIA 465
>pdb|3A2Q|A Chain A, Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolase
Complexed With Substrate
Length = 493
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 100/416 (24%), Positives = 164/416 (39%), Gaps = 78/416 (18%)
Query: 238 DACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXX 297
DA V R+R G +L+GKTN E+G + +G RNP++ +
Sbjct: 100 DAYFVQRMRAAGFVLLGKTNTPEMGNQVTTEPEAWGATRNPWNLGRSVGGSSGGSGAAVA 159
Query: 298 XXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRI-PLSGVLPLNWTVGMV--GILAATV 354
L PVA G D G+VR+PA++CGVVG KPT GRI P V + G G+ A +V
Sbjct: 160 AALSPVAHGNDAAGAVRIPASVCGVVGLKPTRGRISPGPLVTDSDNVAGAAHEGLFARSV 219
Query: 355 EDALVVYAAINGPLPSQQ---PTVSLPKVS---------------------FPLLKSATS 390
D + ++G P PT S P F L +
Sbjct: 220 RDIAALLDVVSGHRPGDTFCAPTASRPYAQGISENPGSLRVGVLTHNPVGDFALDPECAA 279
Query: 391 ISAIKLAKYDAWFNDCSD-------------DIRVCCSRAVDKLCERYGWKVV------E 431
+ A A +D +D D C A+ + ER G + +
Sbjct: 280 AARGAAAALAALGHDVNDAYPEALGDRSFLKDYSTICDVAIAREIERNGELIGRPLTEDD 339
Query: 432 VTIPNIEVMRLAHYLT--IGSECSTSLSSYLQKINCSDQGWDARVALSVYGSFSSQEYIK 489
V + E+++ A +T + C L Y K+ ++ W+A L + + + Q
Sbjct: 340 VEWTSWEMVKRADQVTGRAFAACVDELRYYAGKV---ERWWEAGWDLLILPTVTRQ---- 392
Query: 490 AQKIRNHQMQIHRNVFAKADVIVVPTTGVTAYEIKDDALKTGELDYIYGAALVRYQIAGN 549
+I + AK T E + A +G L ++ + + N
Sbjct: 393 -------TPEIGELMLAKG----------TDLEGRQSAFISGSLQ------MLAFTVPFN 429
Query: 550 FLGLPAVTVPVGYDTAGLPIGLQFIGKPWSEPTLMHIAFAMQALCISEFRKPKVFH 605
G PA+++P+G + G+PIG+Q + E L+ +A ++ R+P++ +
Sbjct: 430 VSGQPAISLPIGMSSDGMPIGVQIVAAYGREDLLLQVAAQLEGALPWVARRPQLLN 485
>pdb|1OBK|A Chain A, Crystal Structure Of The R158q Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OBK|B Chain B, Crystal Structure Of The R158q Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 85.1 bits (209), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 103/450 (22%), Positives = 177/450 (39%), Gaps = 70/450 (15%)
Query: 137 TVLDYSKAYSSGDITPRMVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRYK 196
++ D + +G+++P + AA+ ++ F+ +++ + R +
Sbjct: 3 SLADLQRRIETGELSPNAAIAQSHAAIEAREK---EVHAFVRHDK----------SARAQ 49
Query: 197 KGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKT 256
P L G+ + +KD ID + PT G++ +P + DA VM L+ GA ++GKT
Sbjct: 50 ASGP---LRGIAVGIKDIIDTANMPTEMGSEIYRGWQPRS-DAPVVMMLKRAGATIIGKT 105
Query: 257 NMHELGAG--TSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVR 314
+ T+ +NPH + + P+ALG GGSV
Sbjct: 106 TTTAFASRDPTATLNPH--------NTGHSPGGSSSGSAAAVGAGMIPLALGTQTGGSVI 157
Query: 315 MPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVED------ALVVYAAINGPL 368
PAA CG KP+F +P GV +W + VG+ A ED A+ + +G +
Sbjct: 158 QPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAMTGRSEFSGIV 217
Query: 369 PSQQPTVSLPKVSFPLLKSATSISAIKLAKYDAWFNDCSDDIRVCCSRAVDKLCERYGWK 428
P++ P + + + F A++ A +A K ER G
Sbjct: 218 PAKAPRIGVVRQEF--------AGAVEPAAEQGL-------------QAAIKAAERAGAS 256
Query: 429 VVEVTIPNI--EVMRLAHYLTIGSECSTSLSSYLQKINCSDQGWDARVALSVYGSFSSQE 486
V + +P E R+ H + E +L+ + + + R +L + +E
Sbjct: 257 VQAIDLPEAVHEAWRI-HPIIQDFEAHRALAWEFSE-HHDEIAPMLRASLDATVGLTPKE 314
Query: 487 YIKAQKIRNHQMQIHRNVFAKADVIVVPTTGVTAYEIKDDALKTGELDYIYGAALVRYQI 546
Y +A++I + VF DV++ + A T + RY
Sbjct: 315 YDEARRIGRRGRRELGEVFEGVDVLLTYS-----------APGTAPAKALASTGDPRYNR 363
Query: 547 AGNFLGLPAVTVPVGYDTAGLPIGLQFIGK 576
+G P V VPV GLPIG+Q I +
Sbjct: 364 LWTLMGNPCVNVPV-LKVGGLPIGVQVIAR 392
>pdb|1OBJ|A Chain A, Crystal Structure Of The T150a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OBJ|B Chain B, Crystal Structure Of The T150a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 107/451 (23%), Positives = 181/451 (40%), Gaps = 72/451 (15%)
Query: 137 TVLDYSKAYSSGDITPRMVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRYK 196
++ D + +G+++P + AA+ ++ F+ +++ + R +
Sbjct: 3 SLADLQRRIETGELSPNAAIAQSHAAIEAREK---EVHAFVRHDK----------SARAQ 49
Query: 197 KGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKT 256
P L G+ + +KD ID + PT G++ +P + DA VM L+ GA ++GKT
Sbjct: 50 ASGP---LRGIAVGIKDIIDTANMPTEMGSEIYRGWQPRS-DAPVVMMLKRAGATIIGKT 105
Query: 257 NMHELGAG--TSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVR 314
+ T+ +NPH + + P+ALG GGSV
Sbjct: 106 TTTAFASRDPTATLNPH--------NTGHSPGGSSSGSAAAVGAGMIPLALGAQTGGSVI 157
Query: 315 MPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVED------ALVVYAAINGPL 368
PAA CG KP+F +P GV +W + VG+ A ED A+ + +G +
Sbjct: 158 RPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAMTGRSEFSGIV 217
Query: 369 PSQQPTVSLPKVSFPLLKSATSISAIKLAKYDAWFNDCSDDIRVCCSRAVDKLCERYGWK 428
P++ P + + + F A++ A +A K ER G
Sbjct: 218 PAKAPRIGVVRQEF--------AGAVEPAAEQGL-------------QAAIKAAERAGAS 256
Query: 429 VVEVTIPNI--EVMRLAHYLTIGSECSTSLSSYLQKINCSDQGWDARVALSVYGSFSSQE 486
V + +P E R+ H + E +L+ + + + R +L + +E
Sbjct: 257 VQAIDLPEAVHEAWRI-HPIIQDFEAHRALAWEFSE-HHDEIAPMLRASLDATVGLTPKE 314
Query: 487 YIKAQKIRNHQMQIHRNVFAKADVIVVPTTGVTAYEIKDDAL-KTGELDYIYGAALVRYQ 545
Y +A++I + VF DV++ + TA AL TG+ RY
Sbjct: 315 YDEARRIGRRGRRELGEVFEGVDVLLTYSAPGTA---PAKALASTGD---------PRYN 362
Query: 546 IAGNFLGLPAVTVPVGYDTAGLPIGLQFIGK 576
+G P V VPV GLPIG+Q I +
Sbjct: 363 RLWTLMGNPCVNVPV-LKVGGLPIGVQVIAR 392
>pdb|1OBL|A Chain A, Crystal Structure Of The S133a Mutant Of Malonamidase E2
Complexed With Malonate From Bradyrhizobium Japonicum
pdb|1OBL|B Chain B, Crystal Structure Of The S133a Mutant Of Malonamidase E2
Complexed With Malonate From Bradyrhizobium Japonicum
Length = 414
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 104/450 (23%), Positives = 179/450 (39%), Gaps = 70/450 (15%)
Query: 137 TVLDYSKAYSSGDITPRMVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRYK 196
++ D + +G+++P + AA+ ++ F+ +++ + R +
Sbjct: 3 SLADLQRRIETGELSPNAAIAQSHAAIEAREK---EVHAFVRHDK----------SARAQ 49
Query: 197 KGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKT 256
P L G+ + +KD ID + PT G++ +P + DA VM L+ GA ++GKT
Sbjct: 50 ASGP---LRGIAVGIKDIIDTANMPTEMGSEIYRGWQPRS-DAPVVMMLKRAGATIIGKT 105
Query: 257 NMHELGAG--TSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVR 314
+ T+ +NPH + P + + P+ALG GGSV
Sbjct: 106 TTTAFASRDPTATLNPH----NTGHSPGGSSAGSAAAVGAG----MIPLALGTQTGGSVI 157
Query: 315 MPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVED------ALVVYAAINGPL 368
PAA CG KP+F +P GV +W + VG+ A ED A+ + +G +
Sbjct: 158 RPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAMTGRSEFSGIV 217
Query: 369 PSQQPTVSLPKVSFPLLKSATSISAIKLAKYDAWFNDCSDDIRVCCSRAVDKLCERYGWK 428
P++ P + + + F A++ A +A K ER G
Sbjct: 218 PAKAPRIGVVRQEF--------AGAVEPAAEQGL-------------QAAIKAAERAGAS 256
Query: 429 VVEVTIPNI--EVMRLAHYLTIGSECSTSLSSYLQKINCSDQGWDARVALSVYGSFSSQE 486
V + +P E R+ H + E +L+ + + + R +L + +E
Sbjct: 257 VQAIDLPEAVHEAWRI-HPIIQDFEAHRALAWEFSE-HHDEIAPMLRASLDATVGLTPKE 314
Query: 487 YIKAQKIRNHQMQIHRNVFAKADVIVVPTTGVTAYEIKDDALKTGELDYIYGAALVRYQI 546
Y +A++I + VF DV++ + A T + RY
Sbjct: 315 YDEARRIGRRGRRELGEVFEGVDVLLTYS-----------APGTAPAKALASTGDPRYNR 363
Query: 547 AGNFLGLPAVTVPVGYDTAGLPIGLQFIGK 576
+G P V VPV GLPIG+Q I +
Sbjct: 364 LWTLMGNPCVNVPV-LKVGGLPIGVQVIAR 392
>pdb|1O9O|A Chain A, Crystal Structure Of The S131a Mutant Of Malonamidase E2
Complexed With Malonamate From Bradyrhizobium Japonicum
pdb|1O9O|B Chain B, Crystal Structure Of The S131a Mutant Of Malonamidase E2
Complexed With Malonamate From Bradyrhizobium Japonicum
pdb|1O9P|A Chain A, Crystal Structure Of The S131a Mutant Of Malonamidase E2
Complexed With Malonate From Bradyrhizobium Japonicum
pdb|1O9P|B Chain B, Crystal Structure Of The S131a Mutant Of Malonamidase E2
Complexed With Malonate From Bradyrhizobium Japonicum
Length = 414
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 104/450 (23%), Positives = 179/450 (39%), Gaps = 70/450 (15%)
Query: 137 TVLDYSKAYSSGDITPRMVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRYK 196
++ D + +G+++P + AA+ ++ F+ +++ + R +
Sbjct: 3 SLADLQRRIETGELSPNAAIAQSHAAIEAREK---EVHAFVRHDK----------SARAQ 49
Query: 197 KGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKT 256
P L G+ + +KD ID + PT G++ +P + DA VM L+ GA ++GKT
Sbjct: 50 ASGP---LRGIAVGIKDIIDTANMPTEMGSEIYRGWQPRS-DAPVVMMLKRAGATIIGKT 105
Query: 257 NMHELGAG--TSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVR 314
+ T+ +NPH + P + + P+ALG GGSV
Sbjct: 106 TTTAFASRDPTATLNPH----NTGHSPGGASSGSAAAVGAG----MIPLALGTQTGGSVI 157
Query: 315 MPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVED------ALVVYAAINGPL 368
PAA CG KP+F +P GV +W + VG+ A ED A+ + +G +
Sbjct: 158 RPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAMTGRSEFSGIV 217
Query: 369 PSQQPTVSLPKVSFPLLKSATSISAIKLAKYDAWFNDCSDDIRVCCSRAVDKLCERYGWK 428
P++ P + + + F A++ A +A K ER G
Sbjct: 218 PAKAPRIGVVRQEF--------AGAVEPAAEQGL-------------QAAIKAAERAGAS 256
Query: 429 VVEVTIPNI--EVMRLAHYLTIGSECSTSLSSYLQKINCSDQGWDARVALSVYGSFSSQE 486
V + +P E R+ H + E +L+ + + + R +L + +E
Sbjct: 257 VQAIDLPEAVHEAWRI-HPIIQDFEAHRALAWEFSE-HHDEIAPMLRASLDATVGLTPKE 314
Query: 487 YIKAQKIRNHQMQIHRNVFAKADVIVVPTTGVTAYEIKDDALKTGELDYIYGAALVRYQI 546
Y +A++I + VF DV++ + A T + RY
Sbjct: 315 YDEARRIGRRGRRELGEVFEGVDVLLTYS-----------APGTAPAKALASTGDPRYNR 363
Query: 547 AGNFLGLPAVTVPVGYDTAGLPIGLQFIGK 576
+G P V VPV GLPIG+Q I +
Sbjct: 364 LWTLMGNPCVNVPV-LKVGGLPIGVQVIAR 392
>pdb|1OCK|A Chain A, The Crystal Structure Of Malonamidase E2 From
Bradyrhizobium Japonicum
pdb|1OCK|B Chain B, The Crystal Structure Of Malonamidase E2 From
Bradyrhizobium Japonicum
pdb|1OCL|A Chain A, The Crystal Structure Of Malonamidase E2 Complexed With
Malonate From Bradyrhizobium Japonicum
pdb|1OCL|B Chain B, The Crystal Structure Of Malonamidase E2 Complexed With
Malonate From Bradyrhizobium Japonicum
pdb|1OCM|A Chain A, The Crystal Structure Of Malonamidase E2 Covalently
Complexed With Pyrophosphate From Bradyrhizobium
Japonicum
pdb|1OCM|B Chain B, The Crystal Structure Of Malonamidase E2 Covalently
Complexed With Pyrophosphate From Bradyrhizobium
Japonicum
Length = 412
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 107/451 (23%), Positives = 181/451 (40%), Gaps = 72/451 (15%)
Query: 137 TVLDYSKAYSSGDITPRMVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRYK 196
++ D + +G+++P + AA+ ++ F+ +++ + R +
Sbjct: 3 SLADLQRRIETGELSPNAAIAQSHAAIEAREK---EVHAFVRHDK----------SARAQ 49
Query: 197 KGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKT 256
P L G+ + +KD ID + PT G++ +P + DA VM L+ GA ++GKT
Sbjct: 50 ASGP---LRGIAVGIKDIIDTANMPTEMGSEIYRGWQPRS-DAPVVMMLKRAGATIIGKT 105
Query: 257 NMHELGAG--TSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVR 314
+ T+ +NPH + + P+ALG GGSV
Sbjct: 106 TTTAFASRDPTATLNPH--------NTGHSPGGSSSGSAAAVGAGMIPLALGTQTGGSVI 157
Query: 315 MPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVED------ALVVYAAINGPL 368
PAA CG KP+F +P GV +W + VG+ A ED A+ + +G +
Sbjct: 158 RPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAMTGRSEFSGIV 217
Query: 369 PSQQPTVSLPKVSFPLLKSATSISAIKLAKYDAWFNDCSDDIRVCCSRAVDKLCERYGWK 428
P++ P + + + F A++ A +A K ER G
Sbjct: 218 PAKAPRIGVVRQEF--------AGAVEPAAEQGL-------------QAAIKAAERAGAS 256
Query: 429 VVEVTIPNI--EVMRLAHYLTIGSECSTSLSSYLQKINCSDQGWDARVALSVYGSFSSQE 486
V + +P E R+ H + E +L+ + + + R +L + +E
Sbjct: 257 VQAIDLPEAVHEAWRI-HPIIQDFEAHRALAWEFSE-HHDEIAPMLRASLDATVGLTPKE 314
Query: 487 YIKAQKIRNHQMQIHRNVFAKADVIVVPTTGVTAYEIKDDAL-KTGELDYIYGAALVRYQ 545
Y +A++I + VF DV++ + TA AL TG+ RY
Sbjct: 315 YDEARRIGRRGRRELGEVFEGVDVLLTYSAPGTA---PAKALASTGD---------PRYN 362
Query: 546 IAGNFLGLPAVTVPVGYDTAGLPIGLQFIGK 576
+G P V VPV GLPIG+Q I +
Sbjct: 363 RLWTLMGNPCVNVPV-LKVGGLPIGVQVIAR 392
>pdb|1OBI|A Chain A, Crystal Structure Of The G130a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OBI|B Chain B, Crystal Structure Of The G130a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 103/450 (22%), Positives = 177/450 (39%), Gaps = 70/450 (15%)
Query: 137 TVLDYSKAYSSGDITPRMVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRYK 196
++ D + +G+++P + AA+ ++ F+ +++ + R +
Sbjct: 3 SLADLQRRIETGELSPNAAIAQSHAAIEAREK---EVHAFVRHDK----------SARAQ 49
Query: 197 KGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKT 256
P L G+ + +KD ID + PT G++ +P + DA VM L+ GA ++GKT
Sbjct: 50 ASGP---LRGIAVGIKDIIDTANMPTEMGSEIYRGWQPRS-DAPVVMMLKRAGATIIGKT 105
Query: 257 NMHELGAG--TSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVR 314
+ T+ +NPH + + P+ALG GGSV
Sbjct: 106 TTTAFASRDPTATLNPH--------NTGHSPGASSSGSAAAVGAGMIPLALGTQTGGSVI 157
Query: 315 MPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVED------ALVVYAAINGPL 368
PAA CG KP+F +P GV +W + VG+ A ED A+ + +G +
Sbjct: 158 RPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAMTGRSEFSGIV 217
Query: 369 PSQQPTVSLPKVSFPLLKSATSISAIKLAKYDAWFNDCSDDIRVCCSRAVDKLCERYGWK 428
P++ P + + + F A++ A +A K ER G
Sbjct: 218 PAKAPRIGVVRQEF--------AGAVEPAAEQGL-------------QAAIKAAERAGAS 256
Query: 429 VVEVTIPNI--EVMRLAHYLTIGSECSTSLSSYLQKINCSDQGWDARVALSVYGSFSSQE 486
V + +P E R+ H + E +L+ + + + R +L + +E
Sbjct: 257 VQAIDLPEAVHEAWRI-HPIIQDFEAHRALAWEFSE-HHDEIAPMLRASLDATVGLTPKE 314
Query: 487 YIKAQKIRNHQMQIHRNVFAKADVIVVPTTGVTAYEIKDDALKTGELDYIYGAALVRYQI 546
Y +A++I + VF DV++ + A T + RY
Sbjct: 315 YDEARRIGRRGRRELGEVFEGVDVLLTYS-----------APGTAPAKALASTGDPRYNR 363
Query: 547 AGNFLGLPAVTVPVGYDTAGLPIGLQFIGK 576
+G P V VPV GLPIG+Q I +
Sbjct: 364 LWTLMGNPCVNVPV-LKVGGLPIGVQVIAR 392
>pdb|1O9Q|A Chain A, Crystal Structure Of The S155c Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1O9Q|B Chain B, Crystal Structure Of The S155c Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OCH|A Chain A, Crystal Structure Of The S155c Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OCH|B Chain B, Crystal Structure Of The S155c Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 102/450 (22%), Positives = 176/450 (39%), Gaps = 70/450 (15%)
Query: 137 TVLDYSKAYSSGDITPRMVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRYK 196
++ D + +G+++P + AA+ ++ F+ +++ + R +
Sbjct: 3 SLADLQRRIETGELSPNAAIAQSHAAIEAREK---EVHAFVRHDK----------SARAQ 49
Query: 197 KGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKT 256
P L G+ + +KD ID + PT G++ +P + DA VM L+ GA ++GKT
Sbjct: 50 ASGP---LRGIAVGIKDIIDTANMPTEMGSEIYRGWQPRS-DAPVVMMLKRAGATIIGKT 105
Query: 257 NMHELGAG--TSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVR 314
+ T+ +NPH + + P+ALG GG V
Sbjct: 106 TTTAFASRDPTATLNPH--------NTGHSPGGSSSGSAAAVGAGMIPLALGTQTGGXVI 157
Query: 315 MPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVED------ALVVYAAINGPL 368
PAA CG KP+F +P GV +W + VG+ A ED A+ + +G +
Sbjct: 158 RPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAMTGRSEFSGIV 217
Query: 369 PSQQPTVSLPKVSFPLLKSATSISAIKLAKYDAWFNDCSDDIRVCCSRAVDKLCERYGWK 428
P++ P + + + F A++ A +A K ER G
Sbjct: 218 PAKAPRIGVVRQEF--------AGAVEPAAEQGL-------------QAAIKAAERAGAS 256
Query: 429 VVEVTIPNI--EVMRLAHYLTIGSECSTSLSSYLQKINCSDQGWDARVALSVYGSFSSQE 486
V + +P E R+ H + E +L+ + + + R +L + +E
Sbjct: 257 VQAIDLPEAVHEAWRI-HPIIQDFEAHRALAWEFSE-HHDEIAPMLRASLDATVGLTPKE 314
Query: 487 YIKAQKIRNHQMQIHRNVFAKADVIVVPTTGVTAYEIKDDALKTGELDYIYGAALVRYQI 546
Y +A++I + VF DV++ + A T + RY
Sbjct: 315 YDEARRIGRRGRRELGEVFEGVDVLLTYS-----------APGTAPAKALASTGDPRYNR 363
Query: 547 AGNFLGLPAVTVPVGYDTAGLPIGLQFIGK 576
+G P V VPV GLPIG+Q I +
Sbjct: 364 LWTLMGNPCVNVPV-LKVGGLPIGVQVIAR 392
>pdb|1O9N|A Chain A, Crystal Structure Of The K62a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1O9N|B Chain B, Crystal Structure Of The K62a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 82.4 bits (202), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 102/450 (22%), Positives = 176/450 (39%), Gaps = 70/450 (15%)
Query: 137 TVLDYSKAYSSGDITPRMVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRYK 196
++ D + +G+++P + AA+ ++ F+ +++ + R +
Sbjct: 3 SLADLQRRIETGELSPNAAIAQSHAAIEAREK---EVHAFVRHDK----------SARAQ 49
Query: 197 KGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKT 256
P L G+ + + D ID + PT G++ +P + DA VM L+ GA ++GKT
Sbjct: 50 ASGP---LRGIAVGIADIIDTANMPTEMGSEIYRGWQPRS-DAPVVMMLKRAGATIIGKT 105
Query: 257 NMHELGAG--TSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVR 314
+ T+ +NPH + + P+ALG GGSV
Sbjct: 106 TTTAFASRDPTATLNPH--------NTGHSPGGSSSGSAAAVGAGMIPLALGTQTGGSVI 157
Query: 315 MPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVED------ALVVYAAINGPL 368
PAA CG KP+F +P GV +W + VG+ A ED A+ + +G +
Sbjct: 158 RPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAMTGRSEFSGIV 217
Query: 369 PSQQPTVSLPKVSFPLLKSATSISAIKLAKYDAWFNDCSDDIRVCCSRAVDKLCERYGWK 428
P++ P + + + F A++ A +A K ER G
Sbjct: 218 PAKAPRIGVVRQEF--------AGAVEPAAEQGL-------------QAAIKAAERAGAS 256
Query: 429 VVEVTIPNI--EVMRLAHYLTIGSECSTSLSSYLQKINCSDQGWDARVALSVYGSFSSQE 486
V + +P E R+ H + E +L+ + + + R +L + +E
Sbjct: 257 VQAIDLPEAVHEAWRI-HPIIQDFEAHRALAWEFSE-HHDEIAPMLRASLDATVGLTPKE 314
Query: 487 YIKAQKIRNHQMQIHRNVFAKADVIVVPTTGVTAYEIKDDALKTGELDYIYGAALVRYQI 546
Y +A++I + VF DV++ + A T + RY
Sbjct: 315 YDEARRIGRRGRRELGEVFEGVDVLLTYS-----------APGTAPAKALASTGDPRYNR 363
Query: 547 AGNFLGLPAVTVPVGYDTAGLPIGLQFIGK 576
+G P V VPV GLPIG+Q I +
Sbjct: 364 LWTLMGNPCVNVPV-LKVGGLPIGVQVIAR 392
>pdb|1MT5|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|C Chain C, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|D Chain D, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|E Chain E, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|F Chain F, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|G Chain G, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|H Chain H, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|I Chain I, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|J Chain J, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|K Chain K, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|L Chain L, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|M Chain M, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|N Chain N, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|O Chain O, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|P Chain P, Crystal Structure Of Fatty Acid Amide Hydrolase
Length = 537
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 83/191 (43%), Gaps = 12/191 (6%)
Query: 147 SGDITPRMVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRYKKGEPISVLDG 206
SG+++P V ++ E + ++ ++ + E L QA L Y G
Sbjct: 52 SGELSPEAVFFTYLGKAWEVNKGTNCVTSYLT-DCETQLSQAPRQGLLY----------G 100
Query: 207 VLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTS 266
V +++K+ + +T G L++ P D V L+L GA+ TN+ +
Sbjct: 101 VPVSLKECFSYKGHDSTLGLS-LNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQSMLSFD 159
Query: 267 GINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFK 326
NP +G NP+ SK P+ LG D GGS+R P+A CG+ G K
Sbjct: 160 CSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCGICGLK 219
Query: 327 PTFGRIPLSGV 337
PT R+ SG+
Sbjct: 220 PTGNRLSKSGL 230
>pdb|2WAP|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With The Drug-Like Urea
Inhibitor Pf-3845
pdb|2WAP|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With The Drug-Like Urea
Inhibitor Pf-3845
Length = 543
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 83/191 (43%), Gaps = 12/191 (6%)
Query: 147 SGDITPRMVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRYKKGEPISVLDG 206
SG+++P V ++ E + ++ ++ + E L QA L Y G
Sbjct: 58 SGELSPEAVFFTYLGKAWEVNKGTNCVTSYLT-DCETQLSQAPRQGLLY----------G 106
Query: 207 VLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTS 266
V +++K+ + +T G L++ P D V L+L GA+ TN+ +
Sbjct: 107 VPVSLKECFSYKGHDSTLGLS-LNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQSMFSYD 165
Query: 267 GINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFK 326
NP +G NP+ SK P+ LG D GGS+R P+A CG+ G K
Sbjct: 166 CSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCGICGLK 225
Query: 327 PTFGRIPLSGV 337
PT R+ SG+
Sbjct: 226 PTGNRLSKSGL 236
>pdb|4HBP|A Chain A, Crystal Structure Of Faah In Complex With Inhibitor
pdb|4HBP|B Chain B, Crystal Structure Of Faah In Complex With Inhibitor
Length = 550
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 83/191 (43%), Gaps = 12/191 (6%)
Query: 147 SGDITPRMVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRYKKGEPISVLDG 206
SG+++P V ++ E + ++ ++ + E L QA L Y G
Sbjct: 59 SGELSPEAVFFTYLGKAWEVNKGTNCVTSYLT-DCETQLSQAPRQGLLY----------G 107
Query: 207 VLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTS 266
V +++K+ + +T G L++ P D V L+L GA+ TN+ +
Sbjct: 108 VPVSLKECFSYKGHDSTLGLS-LNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQSMLSFD 166
Query: 267 GINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFK 326
NP +G NP+ SK P+ LG D GGS+R P+A CG+ G K
Sbjct: 167 CSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCGICGLK 226
Query: 327 PTFGRIPLSGV 337
PT R+ SG+
Sbjct: 227 PTGNRLSKSGL 237
>pdb|4DO3|A Chain A, Structure Of Faah With A Non-steroidal Anti-inflammatory
Drug
pdb|4DO3|B Chain B, Structure Of Faah With A Non-steroidal Anti-inflammatory
Drug
Length = 571
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 84/195 (43%), Gaps = 12/195 (6%)
Query: 143 KAYSSGDITPRMVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRYKKGEPIS 202
+ SG+++P V ++ E + ++ ++ + E L QA L Y
Sbjct: 74 QKLQSGELSPEAVFFTYLGKAWEVNKGTNCVTSYLT-DCETQLSQAPRQGLLY------- 125
Query: 203 VLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELG 262
GV +++K+ + +T G L++ P D V L+L GA+ TN+ +
Sbjct: 126 ---GVPVSLKECFSYKGHDSTLGLS-LNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQSM 181
Query: 263 AGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGV 322
NP +G NP+ SK P+ LG D GGS+R P+A CG+
Sbjct: 182 LSFDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCGI 241
Query: 323 VGFKPTFGRIPLSGV 337
G KPT R+ SG+
Sbjct: 242 CGLKPTGNRLSKSGL 256
>pdb|2WJ1|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With
7-Phenyl-1-(4-(Pyridin-2- Yl)oxazol-2-Yl)heptan-1-One,
An Alpha-Ketooxazole
pdb|2WJ1|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With
7-Phenyl-1-(4-(Pyridin-2- Yl)oxazol-2-Yl)heptan-1-One,
An Alpha-Ketooxazole
pdb|2WJ2|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With
7-Phenyl-1-(5-(Pyridin-2- Yl)oxazol-2-Yl)heptan-1-One,
An Alpha-Ketooxazole
pdb|2WJ2|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With
7-Phenyl-1-(5-(Pyridin-2- Yl)oxazol-2-Yl)heptan-1-One,
An Alpha-Ketooxazole
pdb|3K7F|A Chain A, Crystal Structure Analysis Of A
PhenhexylOXAZOLECARBOXYPYRIDINE ALPHA-Ketoheterocycle
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase'
pdb|3K7F|B Chain B, Crystal Structure Analysis Of A
PhenhexylOXAZOLECARBOXYPYRIDINE ALPHA-Ketoheterocycle
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase'
pdb|3K83|A Chain A, Crystal Structure Analysis Of A
BiphenylOXAZOLECARBOXYPYRIDINE ALPHA-Ketoheterocycle
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase
pdb|3K83|B Chain B, Crystal Structure Analysis Of A
BiphenylOXAZOLECARBOXYPYRIDINE ALPHA-Ketoheterocycle
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase
pdb|3K84|A Chain A, Crystal Structure Analysis Of A OleylOXADIAZOLEPYRIDINE
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase
pdb|3K84|B Chain B, Crystal Structure Analysis Of A OleylOXADIAZOLEPYRIDINE
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase
pdb|3LJ6|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With The Drug-Like Urea
Inhibitor Pf-3845 At 2.42a Resolution
pdb|3LJ6|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With The Drug-Like Urea
Inhibitor Pf-3845 At 2.42a Resolution
pdb|3LJ7|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With Carbamate Inhibitor
Urb597
pdb|3LJ7|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With Carbamate Inhibitor
Urb597
pdb|3OJ8|A Chain A, Alpha-Ketoheterocycle Inhibitors Of Fatty Acid Amide
Hydrolase Containing Additional Conformational
Contraints In The Acyl Side Chain
pdb|3OJ8|B Chain B, Alpha-Ketoheterocycle Inhibitors Of Fatty Acid Amide
Hydrolase Containing Additional Conformational
Contraints In The Acyl Side Chain
pdb|3PPM|A Chain A, Crystal Structure Of A Noncovalently Bound
Alpha-Ketoheterocycle Inhibitor
(PhenhexylOXADIAZOLEPYRIDINE) TO A HUMANIZED VARIANT OF
Fatty Acid Amide Hydrolase
pdb|3PPM|B Chain B, Crystal Structure Of A Noncovalently Bound
Alpha-Ketoheterocycle Inhibitor
(PhenhexylOXADIAZOLEPYRIDINE) TO A HUMANIZED VARIANT OF
Fatty Acid Amide Hydrolase
pdb|3PR0|A Chain A, Crystal Structure Of A Covalently Bound
Alpha-Ketoheterocycle Inhibitor
(PhenhexylOXADIAZOLEPYRIDINE) TO A HUMANIZED VARIANT OF
Fatty Acid Amide Hydrolase
pdb|3PR0|B Chain B, Crystal Structure Of A Covalently Bound
Alpha-Ketoheterocycle Inhibitor
(PhenhexylOXADIAZOLEPYRIDINE) TO A HUMANIZED VARIANT OF
Fatty Acid Amide Hydrolase
Length = 573
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 83/191 (43%), Gaps = 12/191 (6%)
Query: 147 SGDITPRMVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRYKKGEPISVLDG 206
SG+++P V ++ E + ++ ++ + E L QA L Y G
Sbjct: 82 SGELSPEAVFFTYLGKAWEVNKGTNCVTSYLT-DCETQLSQAPRQGLLY----------G 130
Query: 207 VLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTS 266
V +++K+ + +T G L++ P D V L+L GA+ TN+ +
Sbjct: 131 VPVSLKECFSYKGHDSTLGLS-LNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQSMFSYD 189
Query: 267 GINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFK 326
NP +G NP+ SK P+ LG D GGS+R P+A CG+ G K
Sbjct: 190 CSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCGICGLK 249
Query: 327 PTFGRIPLSGV 337
PT R+ SG+
Sbjct: 250 PTGNRLSKSGL 260
>pdb|2VYA|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase Conjugated
With The Drug-Like Inhibitor Pf-750
pdb|2VYA|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase Conjugated
With The Drug-Like Inhibitor Pf-750
Length = 587
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 83/191 (43%), Gaps = 12/191 (6%)
Query: 147 SGDITPRMVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRYKKGEPISVLDG 206
SG+++P V ++ E + ++ ++ + E L QA L Y G
Sbjct: 96 SGELSPEAVFFTYLGKAWEVNKGTNCVTSYLT-DCETQLSQAPRQGLLY----------G 144
Query: 207 VLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTS 266
V +++K+ + +T G L++ P D V L+L GA+ TN+ +
Sbjct: 145 VPVSLKECFSYKGHDSTLGLS-LNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQSMFSYD 203
Query: 267 GINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFK 326
NP +G NP+ SK P+ LG D GGS+R P+A CG+ G K
Sbjct: 204 CSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCGICGLK 263
Query: 327 PTFGRIPLSGV 337
PT R+ SG+
Sbjct: 264 PTGNRLSKSGL 274
>pdb|3QK5|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Inhibitor
pdb|3QK5|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Inhibitor
pdb|3QJ8|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|3QJ8|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|3QJ9|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Inhibitor
pdb|3QJ9|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Inhibitor
pdb|3QKV|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Compound
pdb|3QKV|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Compound
Length = 587
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 83/191 (43%), Gaps = 12/191 (6%)
Query: 147 SGDITPRMVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRYKKGEPISVLDG 206
SG+++P V ++ E + ++ ++ + E L QA L Y G
Sbjct: 96 SGELSPEAVFFTYLGKAWEVNKGTNCVTSYLT-DCETQLSQAPRQGLLY----------G 144
Query: 207 VLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTS 266
V +++K+ + +T G L++ P D V L+L GA+ TN+ +
Sbjct: 145 VPVSLKECFSYKGHDSTLGLS-LNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQSMLSFD 203
Query: 267 GINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFK 326
NP +G NP+ SK P+ LG D GGS+R P+A CG+ G K
Sbjct: 204 CSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCGICGLK 263
Query: 327 PTFGRIPLSGV 337
PT R+ SG+
Sbjct: 264 PTGNRLSKSGL 274
>pdb|2A5S|A Chain A, Crystal Structure Of The Nr2a Ligand Binding Core In
Complex With Glutamate
pdb|2A5T|B Chain B, Crystal Structure Of The Nr1NR2A LIGAND-Binding Cores
Complex
Length = 284
Score = 36.6 bits (83), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 33/55 (60%), Gaps = 5/55 (9%)
Query: 527 ALKTGELD-YIYGAALVRYQIAGNFLGLPAVTVPVGY--DTAGLPIGLQFIGKPW 578
+LKTG+LD +IY AA++ Y+ AG G VT+ GY T G I LQ G PW
Sbjct: 201 SLKTGKLDAFIYDAAVLNYK-AGRDEGCKLVTIGSGYIFATTGYGIALQ-KGSPW 253
>pdb|1XNF|A Chain A, Crystal Structure Of E.Coli Tpr-Protein Nlpi
pdb|1XNF|B Chain B, Crystal Structure Of E.Coli Tpr-Protein Nlpi
Length = 275
Score = 32.0 bits (71), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 423 ERYGWKVVEVTIPNIEVMRLAHYLTIGSECSTSLSSYLQKIN 464
E++GW +VE + NI L L + +TSL+ +L + N
Sbjct: 177 EQWGWNIVEFYLGNISEQTLXERLKADATDNTSLAEHLSETN 218
>pdb|3IZ6|O Chain O, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 151
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Query: 339 PLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISAIKLAK 398
P +W V AA VE+ +++ AA G +PSQ V + PL+KS T +++ K
Sbjct: 22 PPSW----VKTAAADVEE-MIMKAAKKGQMPSQIGVVLRDQHGIPLVKSVTGSKILRILK 76
Query: 399 YDAWFNDCSDDIRVCCSRAV 418
+ +D+ +AV
Sbjct: 77 AHGLAPEIPEDLYFLIKKAV 96
>pdb|1FIU|A Chain A, Tetrameric Restriction Endonuclease Ngomiv In Complex With
Cleaved Dna
pdb|1FIU|B Chain B, Tetrameric Restriction Endonuclease Ngomiv In Complex With
Cleaved Dna
pdb|1FIU|C Chain C, Tetrameric Restriction Endonuclease Ngomiv In Complex With
Cleaved Dna
pdb|1FIU|D Chain D, Tetrameric Restriction Endonuclease Ngomiv In Complex With
Cleaved Dna
pdb|4ABT|A Chain A, Crystal Structure Of Type Iif Restriction Endonuclease
Ngomiv With Cognate Uncleaved Dna
pdb|4ABT|B Chain B, Crystal Structure Of Type Iif Restriction Endonuclease
Ngomiv With Cognate Uncleaved Dna
Length = 286
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 27/53 (50%)
Query: 489 KAQKIRNHQMQIHRNVFAKADVIVVPTTGVTAYEIKDDALKTGELDYIYGAAL 541
+AQ R+ + + RN + IVV T T I AL TGE+D +Y AL
Sbjct: 194 RAQNARSEGLNLVRNRKGRLPHIVVVTAEPTPSRISSIALGTGEIDCVYHFAL 246
>pdb|4G1B|A Chain A, X-Ray Structure Of Yeast Flavohemoglobin In Complex With
Econazole
pdb|4G1B|B Chain B, X-Ray Structure Of Yeast Flavohemoglobin In Complex With
Econazole
pdb|4G1B|C Chain C, X-Ray Structure Of Yeast Flavohemoglobin In Complex With
Econazole
pdb|4G1B|D Chain D, X-Ray Structure Of Yeast Flavohemoglobin In Complex With
Econazole
pdb|4G1V|A Chain A, X-Ray Structure Of Yeast Flavohemoglobin
Length = 399
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 60/140 (42%), Gaps = 12/140 (8%)
Query: 103 IKHIDSDLSPPEKVQ------QAIDCLPLSSEKQPFFHR----WTVLDYS-KAYSSGDIT 151
IK + D + PE + QAI + ++ EK+ + W + + K Y + DI
Sbjct: 106 IKEVLGDAATPEIINAWGEAYQAIADIFITVEKKMYEEALWPGWKPFEITAKEYVASDIV 165
Query: 152 PRMVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRYKKGEPISVLDGVLIAV 211
V +F + + E + P+ +I N I ++ LR+ S +G+ AV
Sbjct: 166 EFTVKPKFGSGI-ELESLPITPGQYITVNTHPIRQENQYDALRHYSLCSASTKNGLRFAV 224
Query: 212 KDEIDCSPYPTTGGTKWLHK 231
K E +P +++LHK
Sbjct: 225 KMEAARENFPAGLVSEYLHK 244
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,208,905
Number of Sequences: 62578
Number of extensions: 760265
Number of successful extensions: 1515
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1431
Number of HSP's gapped (non-prelim): 48
length of query: 611
length of database: 14,973,337
effective HSP length: 105
effective length of query: 506
effective length of database: 8,402,647
effective search space: 4251739382
effective search space used: 4251739382
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)