Query 007242
Match_columns 611
No_of_seqs 326 out of 1828
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 20:49:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007242.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007242hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ip4_A Glutamyl-tRNA(Gln) amid 100.0 4E-101 1E-105 847.7 44.3 458 133-603 3-485 (485)
2 2dc0_A Probable amidase; struc 100.0 5E-100 2E-104 826.7 39.2 430 136-594 1-433 (434)
3 3h0l_A Glutamyl-tRNA(Gln) amid 100.0 1.4E-98 5E-103 823.7 41.4 450 134-601 3-476 (478)
4 1m22_A Peptide amidase, PAM; e 100.0 8.3E-98 3E-102 824.3 41.6 457 132-607 7-495 (503)
5 3kfu_E Glutamyl-tRNA(Gln) amid 100.0 4E-98 1E-102 818.1 36.1 444 136-602 1-467 (471)
6 3a2q_A 6-aminohexanoate-cyclic 100.0 3E-97 1E-101 818.6 42.7 455 133-604 6-484 (493)
7 2gi3_A Glutamyl-tRNA(Gln) amid 100.0 1.5E-94 5.2E-99 793.7 31.6 436 132-598 6-465 (476)
8 1o9p_A Malonamidase E2; malona 100.0 4.3E-93 1.5E-97 767.6 39.2 408 136-595 2-411 (414)
9 3ppm_A Fatty-acid amide hydrol 100.0 1.1E-90 3.8E-95 771.4 34.9 442 132-601 67-572 (573)
10 3a1k_A Amidase; AS family enzy 100.0 2.4E-91 8.2E-96 773.4 21.6 449 136-595 13-503 (521)
11 3shg_B VBHA; ampylation, adeny 36.8 42 0.0014 24.9 4.0 27 139-165 33-59 (61)
No 1
>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} SCOP: c.117.1.1 PDB: 2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A
Probab=100.00 E-value=3.5e-101 Score=847.69 Aligned_cols=458 Identities=30% Similarity=0.442 Sum_probs=391.9
Q ss_pred ccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCCCceEEEEecCHHHHHHHHHHHhhhh-hcCCCCCCccCcEEEE
Q 007242 133 FHRWTVLDYSKAYSSGDITPRMVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRY-KKGEPISVLDGVLIAV 211 (611)
Q Consensus 133 ~~~~si~~~~~~~~sg~lT~~ev~~a~l~~i~~~~~~~~~~~a~~~~~~~~al~~A~~~d~r~-~~g~~lgpL~GVPi~v 211 (611)
+.++|+.+++++|++|++||+||+++||+||++.+ +.+|||+++++|+|+++|+++|+++ ++|++ ||||||||+|
T Consensus 3 l~~~~~~~l~~~i~~g~~s~~el~~a~l~ri~~~~---~~lna~~~~~~~~Al~~A~~~d~~~~~~g~~-gpL~GvPi~v 78 (485)
T 3ip4_A 3 IRYESVENLLTLIKDKKIKPSDVVKDIYDAIEETD---PTIKSFLALDKENAIKKAQELDELQAKDQMD-GKLFGIPMGI 78 (485)
T ss_dssp GGGCCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH---HHHCCEEEECHHHHHHHHHHHHHHHHTTCCC-STTTTCEEEE
T ss_pred cccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhC---CCceEEEEECHHHHHHHHHHHHHHHHhcCCC-CCcCCCEEEE
Confidence 45689999999999999999999999999999886 6899999999999999999999999 89999 9999999999
Q ss_pred ecCCCCCCccCCccccccccCCCCCCcHHHHHHHHHCCCeEEEecCcCccccCCCCCCCCCCCCCCCCCCCCCCCCCChh
Q 007242 212 KDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITGGSSSG 291 (611)
Q Consensus 212 KD~~~v~g~~tt~Gs~~~~~~~~~~~da~~V~~Lr~aGAIi~GKtn~~E~~~~~~~~n~~~G~t~NP~n~~~~~GGSSgG 291 (611)
||+|+++|++||+||..+.++ .+.+||++|++||+||||++||||||||+++.+|.|++||+|+||||++++|||||||
T Consensus 79 KD~~~v~G~~tt~Gs~~~~~~-~~~~dA~vV~rLr~AGAii~GKTn~~Efa~~~~t~n~~~G~t~NP~~~~~~pGGSSgG 157 (485)
T 3ip4_A 79 KDNIITNGLETTCASKMLEGF-VPIYESTVMEKLHKENAVLIGKLNMDEFAMGGSTETSYFKKTVNPFDHKAVPGGSSGG 157 (485)
T ss_dssp ETTBCBTTBCCCTTSGGGTTC-CCSSCCHHHHHHHHTTCEEEEEECCSGGGCCSSSTTCSSCCCCBTTBTTBCCCSSSHH
T ss_pred EcCcccCCCccCCCChhhcCC-CCCCCcHHHHHHHHCCCEEEEecCCcccccCCCCCCCCCCCcCCccccCcCCCCCccH
Confidence 999999999999999988665 4578999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhCCccceeeccCCCcccccccccCcccccCCCCCcCCCCCCCCCCccccccccccCHHHHHHHHHHHcCCCCCC
Q 007242 292 SAAVVAAGLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQ 371 (611)
Q Consensus 292 saaaVAag~~p~alGtD~gGSiRiPAa~~Gv~GlKPT~Grvs~~g~~~~~~~~~~~Gplarsv~Dla~~~~~i~g~d~~~ 371 (611)
||++||+|++|+|+|||+|||||+||+||||||||||+||||+.|++|+++++|++|||||||+|+++++++|+|+|+.|
T Consensus 158 sAaaVAag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~Grvs~~G~~p~~~sld~~Gp~aRsv~D~a~~l~vl~g~d~~d 237 (485)
T 3ip4_A 158 SAAAVAAGLVPLSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLEAISGADVND 237 (485)
T ss_dssp HHHHHHTTSCSEEEEECSSSTTHHHHHHTTCEEEECCTTSBCCTTBCCSCTTTCCEEEEESSHHHHHHHHHHHBSCCTTC
T ss_pred HHHHhhcCCCceeeeccCCcchhhhHHHhCCeeecCCCCcccCCCCCCcccccceeccccCCHHHHHHHHHHhcCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CCCcCCCCCCcccccccCCCCceEEEEeCCCcC-CCCHHHHHHHHHHHHHHHHHcCcEEEEeecCchHHHHHHHHHHHHH
Q 007242 372 QPTVSLPKVSFPLLKSATSISAIKLAKYDAWFN-DCSDDIRVCCSRAVDKLCERYGWKVVEVTIPNIEVMRLAHYLTIGS 450 (611)
Q Consensus 372 ~~~~~~p~~~~p~~~~~~~~~~lrIGv~~~~~~-~~~p~V~~a~~~a~~~L~~~~G~eVvei~~p~l~~~~~a~~~~~~~ 450 (611)
..+...|...+... ....++++|||++.+++. .++|+|+++++++++.|++ +||+|+++++|.+++....+...+..
T Consensus 238 ~~~~~~~~~~~~~~-~~~~~~~lrigv~~~~~~~~~~~~v~~a~~~a~~~L~~-~G~~v~~~~~p~~~~~~~~~~~~~~~ 315 (485)
T 3ip4_A 238 STSAPVDDVDFTSE-IGKDIKGLKVALPKEYLGEGVADDVKEAVQNAVETLKS-LGAVVEEVSLPNTKFGIPSYYVIASS 315 (485)
T ss_dssp TTSCCCCCCCCSTT-TTCCCTTCEEEEEGGGGSTTSCHHHHHHHHHHHHHHHH-TTCEEEEECCTTGGGHHHHHHHHHHH
T ss_pred ccccccCccchhhh-hccCccCcEEEEECCcccCCCCHHHHHHHHHHHHHHHH-CCCEEEEeCCCcHHHHHHHHHHHHHH
Confidence 54332222111110 123478999999988764 5799999999999999997 89999999999887777777777888
Q ss_pred HHHhhhhHHHh------------------hccCCCCchhHHHHHHhhc-----CCCHHHHHHHHHHHHHHHHHHHhHhcC
Q 007242 451 ECSTSLSSYLQ------------------KINCSDQGWDARVALSVYG-----SFSSQEYIKAQKIRNHQMQIHRNVFAK 507 (611)
Q Consensus 451 E~~~~l~~~~~------------------~~~~~~l~~~~r~~l~~~~-----~~sa~dy~~a~~~r~~~~~~~~~lf~~ 507 (611)
|+..++..+.. ......+++.++..+..+. .....+|.++++.|+++++.+.++|++
T Consensus 316 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~ 395 (485)
T 3ip4_A 316 EASSNLSRFDGIRYGYHSKEAHSLEELYKMSRSEGFGKEVKRRIFLGTFALSSGYYDAYYKKSQKVRTLIKNDFDKVFEN 395 (485)
T ss_dssp HHHHHTTTCSSSSSSCCCTTCCSHHHHHHHHHHHHSCHHHHHHHHHHHHHHSTTTTTTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhhhhhccccccccccHHHHHHhhhhhhcCHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88776543211 0011224445544443332 222345889999999999999999999
Q ss_pred CCEEEeeCCCCCcccccchhhccCcchhhhcccccccchhhhhhCCCceecccccCCCCCceEEEEEeCCCChHHHHHHH
Q 007242 508 ADVIVVPTTGVTAYEIKDDALKTGELDYIYGAALVRYQIAGNFLGLPAVTVPVGYDTAGLPIGLQFIGKPWSEPTLMHIA 587 (611)
Q Consensus 508 ~DvIltPttp~~ap~i~~~~~~~g~~~~~~~~~~~~yt~~~Nl~G~PAisvPvG~~~~GlPvGvQivG~~~~E~~LL~~A 587 (611)
+|+||+||+|.++|+++... + +.........||.+||++|+|++|||+|++ +|||+||||||++|+|+.||++|
T Consensus 396 ~D~ll~Pt~~~~a~~~~~~~---~--~~~~~~~~~~~t~~~nl~G~PaisvP~g~~-~GlPvGlqlvg~~~~d~~lL~~A 469 (485)
T 3ip4_A 396 YDVVVGPTAPTTAFNLGEEI---D--DPLTMYANDLLTTPVNLAGLPGISVPCGQS-NGRPIGLQFIGKPFDEKTLYRVA 469 (485)
T ss_dssp CSEEEEESSSSSCCBTTTST---T--CHHHHHGGGTTTHHHHHHTCCEEEEEEEEE-TTEEEEEEEECSTTCHHHHHHHH
T ss_pred CCEEEeCCCCCCCCCccccc---C--ChHHHhhhhhhhhhhHhhCCCeEEEeCCcC-CCCCEeEEEEcCCCCHHHHHHHH
Confidence 99999999999999986521 0 111111123489999999999999999998 89999999999999999999999
Q ss_pred HHHHHhcccCCCCCCc
Q 007242 588 FAMQALCISEFRKPKV 603 (611)
Q Consensus 588 ~~lE~~~~~~~~~P~~ 603 (611)
+++|+.+.+.+++|++
T Consensus 470 ~~lE~~~~~~~~~p~~ 485 (485)
T 3ip4_A 470 YQYETQYNLHDVYEKL 485 (485)
T ss_dssp HHHHHHSCCTTTGGGC
T ss_pred HHHHHhcCcccCCCCC
Confidence 9999998888777753
No 2
>2dc0_A Probable amidase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Thermus thermophilus}
Probab=100.00 E-value=5.4e-100 Score=826.74 Aligned_cols=430 Identities=27% Similarity=0.402 Sum_probs=387.0
Q ss_pred cCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCCCceEEEEecCHHHHHHHHHHHhhhhhcCCCCCCccCcEEEEecCC
Q 007242 136 WTVLDYSKAYSSGDITPRMVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEI 215 (611)
Q Consensus 136 ~si~~~~~~~~sg~lT~~ev~~a~l~~i~~~~~~~~~~~a~~~~~~~~al~~A~~~d~r~~~g~~lgpL~GVPi~vKD~~ 215 (611)
+|+.+++++|++|++|++||+++||+||++.+ + +|+|+++++|+|+++|+++|+++++|+++||||||||+|||+|
T Consensus 1 ~~~~~l~~~~~~g~~s~~el~~a~l~ri~~~~---~-lna~~~~~~~~Al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~ 76 (434)
T 2dc0_A 1 MDLLEAKRLLETGRTTPLALLEEALERAKAFQ---D-RNALAYLDEEAARKEALALTEELRRGQVRGPLHGLPLTVKDLF 76 (434)
T ss_dssp CCHHHHHHHHHTTSCCHHHHHHHHHHHHHHTG---G-GCCEEEECHHHHHHHHHHHHHHHHTTCCCSTTTTCEEEEETTS
T ss_pred CCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhC---C-CcEEEEcCHHHHHHHHHHHHHHHhcCCCCCCcCCeeEEEEecc
Confidence 47899999999999999999999999999976 6 9999999999999999999999999999999999999999999
Q ss_pred CCCCccCCccccccccCCCCCCcHHHHHHHHHCCCeEEEecCcCccccCCCCCCCCCCCCCCCCCCCCCCCCCChhhHHH
Q 007242 216 DCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITGGSSSGSAAV 295 (611)
Q Consensus 216 ~v~g~~tt~Gs~~~~~~~~~~~da~~V~~Lr~aGAIi~GKtn~~E~~~~~~~~n~~~G~t~NP~n~~~~~GGSSgGsaaa 295 (611)
|++|++||+||..+ +.++.+|+++|++||+||||++||||||||+++.+|.|++||+|+||||+.++|||||||||++
T Consensus 77 ~v~G~~tt~Gs~~~--~~~a~~dA~vV~rL~~aGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSSgGsAaa 154 (434)
T 2dc0_A 77 PVKGMPTRAGTKAP--LPPLPEEARAVRRLREAGALLFAKTNMHEIALGITGENPWTGPVRNAVDPSRQAGGSSGGSAVA 154 (434)
T ss_dssp CBTTBCCCTTCSSC--CCCCCSSCHHHHHHHHTTCEEEEEECCSGGGCCSSCCCTTTCCCBCSSCTTBBCCSSSHHHHHH
T ss_pred ccCCcccCCCCccc--CCCCCCCHHHHHHHHHCCCEEEEEeChhHHhcCCCCCCCCCCCCCCCCCCCCCCcccHHHHHHH
Confidence 99999999999977 4444789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCccceeeccCCCcccccccccCcccccCCCCCcCCCCCCCCCCccccccccccCHHHHHHHHHHHcCCCCCCCCCc
Q 007242 296 VAAGLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTV 375 (611)
Q Consensus 296 VAag~~p~alGtD~gGSiRiPAa~~Gv~GlKPT~Grvs~~g~~~~~~~~~~~Gplarsv~Dla~~~~~i~g~d~~~~~~~ 375 (611)
||+|++|+|+|||+|||||+||+||||||||||+||+|+.|++|+++++|++|||||||+|+++++++|.|+ +.|.
T Consensus 155 VAag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~G~vs~~g~~~~~~s~d~~Gp~arsv~D~a~~l~~l~g~-~~d~--- 230 (434)
T 2dc0_A 155 VALGIGLASLGTDTGGSIRIPAGFNGVVGFKPSYGRVSLEGALPLSRSTDHAGPLTRSVRDAHFLTEILAGE-SIPL--- 230 (434)
T ss_dssp HHHTSSSCEEEECSSSTTHHHHHHHTCEEEECSTTSSCCTTSCCSCTTTCCEEEEESSHHHHHHHHHHHHTS-CCCC---
T ss_pred HHcCCCceeeecCCChhhhhhHHhCCCEEEECCCCCCCCCCCCCCCCccCeeCcccCCHHHHHHHHHHHhCC-CCCc---
Confidence 999999999999999999999999999999999999999999999999999999999999999999999987 4331
Q ss_pred CCCCCCcccccccCCCCceEEEEeCCCc-CCCCHHHHHHHHHHHHHHHHHcCcEEEEeecCchHHHHHHHHHHHHHHHHh
Q 007242 376 SLPKVSFPLLKSATSISAIKLAKYDAWF-NDCSDDIRVCCSRAVDKLCERYGWKVVEVTIPNIEVMRLAHYLTIGSECST 454 (611)
Q Consensus 376 ~~p~~~~p~~~~~~~~~~lrIGv~~~~~-~~~~p~V~~a~~~a~~~L~~~~G~eVvei~~p~l~~~~~a~~~~~~~E~~~ 454 (611)
...+++|||++.+++ ..++|+++++++++++.|++ +||+|+++++| +++....+...+..|+..
T Consensus 231 -------------~~~~~lrig~~~~~~~~~~~~~v~~a~~~a~~~L~~-~G~~v~~~~~p-~~~~~~~~~~~~~~e~~~ 295 (434)
T 2dc0_A 231 -------------EGVQNPVFGVPLDFLEGRLGVEVRKAFTRLLEDLPA-LRAEVREVSLP-LEGVYEVYTRLVRYEAAR 295 (434)
T ss_dssp -------------CCCCSCEEEECHHHHTTCSCHHHHHHHHHHHHHTTT-TTCEEEECCCC-CTTHHHHHHHHHHHHHHH
T ss_pred -------------ccccCCEEEEECccccCCCCHHHHHHHHHHHHHHHH-CCCEEEEeCCC-cHHHHHHHHHHHHHHHHH
Confidence 025789999987653 46799999999999999997 89999999998 766666677777889888
Q ss_pred hhhHHHhhccCCCCchhHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHhHhcCCCEEEeeCCCCCcccccchhhc--cCc
Q 007242 455 SLSSYLQKINCSDQGWDARVALSVYGSFSSQEYIKAQKIRNHQMQIHRNVFAKADVIVVPTTGVTAYEIKDDALK--TGE 532 (611)
Q Consensus 455 ~l~~~~~~~~~~~l~~~~r~~l~~~~~~sa~dy~~a~~~r~~~~~~~~~lf~~~DvIltPttp~~ap~i~~~~~~--~g~ 532 (611)
.+..+++. ....+.+.++.++..+..++..+|.++++.|+++++.+.++|+++|+||+||+|.++|+++..... .+.
T Consensus 296 ~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~ 374 (434)
T 2dc0_A 296 IHEKALKE-HPEGFSPQVREALLAGLALTEKDYRDAVAEREALRLELVKALRGVDALLLPVQPLPAPPLGTEEVELESGR 374 (434)
T ss_dssp HSHHHHHH-CGGGSCHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTTSSEEEEESCSSSCCBTTCCEEEETTEE
T ss_pred HHHHHHHh-chhhcCHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEECCCCCCCccCcccccccccch
Confidence 87777654 345678888888888888999999999999999999999999999999999999999998653110 011
Q ss_pred chhhhcccccccchhhhhhCCCceecccccCCCCCceEEEEEeCCCChHHHHHHHHHHHHhc
Q 007242 533 LDYIYGAALVRYQIAGNFLGLPAVTVPVGYDTAGLPIGLQFIGKPWSEPTLMHIAFAMQALC 594 (611)
Q Consensus 533 ~~~~~~~~~~~yt~~~Nl~G~PAisvPvG~~~~GlPvGvQivG~~~~E~~LL~~A~~lE~~~ 594 (611)
......++.||.+||++|+|++|||+|+ .+|||+||||||++|+|+.||++|+++|+++
T Consensus 375 --~~~~~~~~~~t~~~nl~G~PaisvP~g~-~~GlPvGvqlvg~~~~d~~lL~~A~~lE~~~ 433 (434)
T 2dc0_A 375 --KGHREAFITLTLPFSLLGVPTLALPFAK-VEGMPVGLQVVGAYGEDGKVLALGGWLEARL 433 (434)
T ss_dssp --EEHHHHHHTTTHHHHHTTCCEEEEEEEE-ETTEEEEEEEECCTTCHHHHHHHHHHHHTTC
T ss_pred --hhhhhhhhhhhhhhhhhCCCeEEEecCC-CCCCCeEEEEECCCCchHHHHHHHHHHHHhh
Confidence 1111233679999999999999999999 7899999999999999999999999999864
No 3
>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_A 3h0r_A*
Probab=100.00 E-value=1.4e-98 Score=823.68 Aligned_cols=450 Identities=28% Similarity=0.457 Sum_probs=384.8
Q ss_pred cccCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCCCceEEEEecCHHHHHHHHHHHhhhhhcCCCCCCccCcEEEEec
Q 007242 134 HRWTVLDYSKAYSSGDITPRMVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRYKKGEPISVLDGVLIAVKD 213 (611)
Q Consensus 134 ~~~si~~~~~~~~sg~lT~~ev~~a~l~~i~~~~~~~~~~~a~~~~~~~~al~~A~~~d~r~~~g~~lgpL~GVPi~vKD 213 (611)
.++|+.+++++|++|++||+||+++||+||++.+ +.+|||+++++|+|+++|+++|++ .||||||||+|||
T Consensus 3 ~~~sa~~l~~~i~~g~~s~~el~~a~l~ri~~~~---~~lna~~~~~~~~Al~~A~~~d~~------~gpL~GvPi~vKD 73 (478)
T 3h0l_A 3 WKKSLSELRELLKRGEVSPKEVVESFYDRYNQTE---EKVKAYITPLYGKALKQAESLKER------ELPLFGIPIAVKD 73 (478)
T ss_dssp TTSCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH---HHHCCEEEECHHHHHHHHHTCCCT------TSTTTTCEEEEET
T ss_pred CcCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhC---CcCcEEEEeChHHHHHHHHhhchh------cCCcCCceEEEEc
Confidence 4679999999999999999999999999999886 679999999999999999999976 6899999999999
Q ss_pred CCCCCCccCCccccccccCCCCCCcHHHHHHHHHCCCeEEEecCcCccccCCCCCCCCCCCCCCCCCCCCCCCCCChhhH
Q 007242 214 EIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITGGSSSGSA 293 (611)
Q Consensus 214 ~~~v~g~~tt~Gs~~~~~~~~~~~da~~V~~Lr~aGAIi~GKtn~~E~~~~~~~~n~~~G~t~NP~n~~~~~GGSSgGsa 293 (611)
+|+++|++||+||..+.+. .+.+|+++|++||+||||++||||||||+++.++.|++||+|+||||++++|||||||||
T Consensus 74 ~~~~~G~~tt~Gs~~~~~~-~~~~da~~V~rL~~aGaii~GKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsa 152 (478)
T 3h0l_A 74 NILVEGEKTTCASKILENF-VAPYDATVIERLKKAGALIVGKTNLDEFAMGSSTEYSAFFPTKNPWDLERVPGGSSGGSA 152 (478)
T ss_dssp TBCCTTSBCCTTCGGGTTC-BCSSCCHHHHHHHHTTCEEEEEECCSGGGCCSSSTTCSSCCCCCTTCTTBCCCSSSHHHH
T ss_pred CccCCCCCcCCcCHhhcCC-CCCCCHHHHHHHHHCCCEEEEEeCchhhhcCCCCCCCCCCCcCCCccCCCCCCcchHHHH
Confidence 9999999999999988665 457899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCccceeeccCCCcccccccccCcccccCCCCCcCCCCCCCCCCccccccccccCHHHHHHHHHHHcCCCCCCCC
Q 007242 294 AVVAAGLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQP 373 (611)
Q Consensus 294 aaVAag~~p~alGtD~gGSiRiPAa~~Gv~GlKPT~Grvs~~g~~~~~~~~~~~Gplarsv~Dla~~~~~i~g~d~~~~~ 373 (611)
++||+|++|+|+|||+|||||+||+||||||||||+||+|+.|++|.++++|++|||||||+|+++++++|+|+|+.|..
T Consensus 153 aaVAag~~~~a~GtDtgGSiR~PAa~cGv~GlKPT~G~v~~~g~~~~~~~~d~~Gp~arsv~D~a~~l~vl~g~d~~d~~ 232 (478)
T 3h0l_A 153 ASVAVLSAPVSLGSDTGGSIRQPASFCGVIGIKPTYGRVSRYGLVAFASSLDQIGVFGRRTEDVALVLEVISGWDEKDST 232 (478)
T ss_dssp HHHHHTSSSCEEEECSSSTTHHHHHHHTCEEEECCTTSBCCTTBCCSCTTTCCEEEEESSHHHHHHHHHHHBSCCTTCTT
T ss_pred HHHHCCCCceeeecCCCCcchhhhHHhCCeeEeCCCCcccCCCCCCCccCCCeecceeCCHHHHHHHHHHhcCCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999987754
Q ss_pred CcCCCCCCcccccccCCCCceEEEEeCCCcC-CCCHHHHHHHHHHHHHHHHHcCcEEEEeecCchHHHHHHHHHHHHHHH
Q 007242 374 TVSLPKVSFPLLKSATSISAIKLAKYDAWFN-DCSDDIRVCCSRAVDKLCERYGWKVVEVTIPNIEVMRLAHYLTIGSEC 452 (611)
Q Consensus 374 ~~~~p~~~~p~~~~~~~~~~lrIGv~~~~~~-~~~p~V~~a~~~a~~~L~~~~G~eVvei~~p~l~~~~~a~~~~~~~E~ 452 (611)
+...|...+... ....++++|||++.+++. .++|+|+++++++++.|++ +||+|+++++|.+++....+..++..|+
T Consensus 233 ~~~~p~~~~~~~-~~~~~~~lrIgv~~~~~~~~~~p~v~~a~~~a~~~L~~-~G~~v~~v~~p~~~~~~~~~~~~~~~e~ 310 (478)
T 3h0l_A 233 SAKVPVPEWSEE-VKKEVKGLKIGLPKEFFEYELQPQVKEAFENFIKELEK-EGFEIKEVSLPHVKYSIPTYYIIAPSEA 310 (478)
T ss_dssp SCCCCCCCHHHH-TTCCCTTCEEEEEGGGGGSCCCHHHHHHHHHHHHHHHH-TTCEEEEECCTTGGGHHHHHHHHHHHHH
T ss_pred ccccCccchhhh-hccCCCCCEEEEECCcccCCCCHHHHHHHHHHHHHHHH-CCCEEEEeCCCcHHHHHHHHHHHHHHHH
Confidence 332221111100 123478999999988764 5799999999999999997 8999999999988777777888888888
Q ss_pred HhhhhHHHh------------------hccCCCCchhHHHHHHhhc-----CCCHHHHHHHHHHHHHHHHHHHhHhcCCC
Q 007242 453 STSLSSYLQ------------------KINCSDQGWDARVALSVYG-----SFSSQEYIKAQKIRNHQMQIHRNVFAKAD 509 (611)
Q Consensus 453 ~~~l~~~~~------------------~~~~~~l~~~~r~~l~~~~-----~~sa~dy~~a~~~r~~~~~~~~~lf~~~D 509 (611)
..++..+.. ......+++.++..+..+. .....+|.++++.|+++++.+.++|+++|
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D 390 (478)
T 3h0l_A 311 SSNLARYDGVRYGYRAKEYKDIFEMYARTRDEGFGPEVKRRIMLGTFALSAGYYDAYYLKAQKVRRLITNDFLKAFEEVD 390 (478)
T ss_dssp HHHTTTCSSSSSSCCCSCCSSHHHHHHHHHHHHSCHHHHHHHHHHHHHTSTTTTTTTHHHHHHHHHHHHHHHHHHTTTCS
T ss_pred HHHHHHhhhhhhcccccccccHHHHHHHhhhhhcCHHHHHHHHhhchhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 876643211 0011224455554443332 22334688999999999999999999999
Q ss_pred EEEeeCCCCCcccccchhhccCcchhhhcccccccchhhhhhCCCceecccccCCCCCceEEEEEeCCCChHHHHHHHHH
Q 007242 510 VIVVPTTGVTAYEIKDDALKTGELDYIYGAALVRYQIAGNFLGLPAVTVPVGYDTAGLPIGLQFIGKPWSEPTLMHIAFA 589 (611)
Q Consensus 510 vIltPttp~~ap~i~~~~~~~g~~~~~~~~~~~~yt~~~Nl~G~PAisvPvG~~~~GlPvGvQivG~~~~E~~LL~~A~~ 589 (611)
+||+||+|.++|+++... + +.........||.+||++|+|++|||+|+ .+|||+||||||++|+|+.||++|++
T Consensus 391 ~ll~Pt~~~~a~~~~~~~---~--~~~~~~~~~~~t~~~nl~G~PaisvP~g~-~~GlPvGlQlvg~~~~D~~LL~~A~~ 464 (478)
T 3h0l_A 391 VIASPTTPTLPFKFGERL---E--NPIEMYLSDILTVPANLAGLPAISIPIAW-KDGLPVGGQLIGKHWDETTLLQISYL 464 (478)
T ss_dssp EEEEESCSSSCCBTTTTS---S--SHHHHHGGGTTTHHHHHHTCCEEEEEEEE-ETTEEEEEEEEECTTCHHHHHHHHHH
T ss_pred EEEcCCCCCCCCCccccc---C--ChHhhhhhhhhhhhhHhhCCCeEEEeCCC-CCCCCeEEEEECCCCCHHHHHHHHHH
Confidence 999999999999986521 1 11111112358999999999999999999 78999999999999999999999999
Q ss_pred HHHhcccCCCCC
Q 007242 590 MQALCISEFRKP 601 (611)
Q Consensus 590 lE~~~~~~~~~P 601 (611)
+|+.+.+.+++|
T Consensus 465 lE~~~~~~~~~p 476 (478)
T 3h0l_A 465 WEQKFKHYEKIP 476 (478)
T ss_dssp HHHHSCGGGCCS
T ss_pred HHHhcCcccCCC
Confidence 999988776666
No 4
>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double layers of alpha helices on TOP and bottom, hydrolase; HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP: c.117.1.1 PDB: 1m21_A*
Probab=100.00 E-value=8.3e-98 Score=824.35 Aligned_cols=457 Identities=28% Similarity=0.428 Sum_probs=385.8
Q ss_pred cccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCCCceEEEEecCHHHHHHHHHHHhhhhhcCCCCCCccCcEEEE
Q 007242 132 FFHRWTVLDYSKAYSSGDITPRMVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRYKKGEPISVLDGVLIAV 211 (611)
Q Consensus 132 ~~~~~si~~~~~~~~sg~lT~~ev~~a~l~~i~~~~~~~~~~~a~~~~~~~~al~~A~~~d~r~~~g~~lgpL~GVPi~v 211 (611)
++.++|+.+++++|++|++|++||+++||+||++.++.++.+|+|+++++| |+++|+++|+++++|++.||||||||+|
T Consensus 7 ~~~~~~~~~l~~~l~~g~~s~~el~~a~l~ri~~~~~~~~~lna~~~~~~~-Al~~A~~~d~~~~~g~~~gpL~GvPi~v 85 (503)
T 1m22_A 7 PYAETDVADLQARMTAGELDSTTLTQAYLQRIAALDRTGPRLRAVIELNPD-ALKEAAERDRERRDGRLRGPLHGIPLLL 85 (503)
T ss_dssp TTTTCCHHHHHHHHHTTSCCHHHHHHHHHHHHHHHTTSTTCCCCEEEECTT-HHHHHHHHHHHHHTTCCCSTTTTCEEEE
T ss_pred CcccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcCCCCceEEEEECCHH-HHHHHHHHHHHHHcCCCCCCcCCceeEe
Confidence 345679999999999999999999999999999987555789999999988 9999999999999999999999999999
Q ss_pred ecCCCCCCccCCccccccccCCCCCCcHHHHHHHHHCCCeEEEecCcCcccc-----CCCCCCCCCCCCCCCCCCCCCCC
Q 007242 212 KDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGA-----GTSGINPHYGVARNPYDPSKITG 286 (611)
Q Consensus 212 KD~~~v~g~~tt~Gs~~~~~~~~~~~da~~V~~Lr~aGAIi~GKtn~~E~~~-----~~~~~n~~~G~t~NP~n~~~~~G 286 (611)
||+|+++|++||+||..+.+. ++ +||++|++||+||||++||||||||++ +.+|+|++||+|+||||++++||
T Consensus 86 KD~~~v~G~~Tt~Gs~~~~~~-~~-~dA~vV~rLr~AGAii~GKTn~~Efa~~~~~~~~~~~n~~~G~t~NP~~~~~~pG 163 (503)
T 1m22_A 86 KDNINAAPMATSAGSLALQGF-RP-DDAYLVRRLRDAGAVVLGKTNLSEWANFRGNDSISGWSARGGQTRNPYRISHSPC 163 (503)
T ss_dssp ETTBCCTTSCCCTTCGGGTTC-CC-CCCHHHHHHHHTTCEEEEEECCSHHHHCSCTTCCTTEETTTEECCCTTSTTBCCC
T ss_pred ecccccCCCCcCCCCHhhcCC-CC-CCcHHHHHHHHCCCEEEeccCHHHHhcccCCCCCCCCCCCCCCCCCCCCCCCCCC
Confidence 999999999999999988665 56 899999999999999999999999998 77899999999999999999999
Q ss_pred CCChhhHHHHHhCCccceeeccCCCcccccccccCcccccCCCCCcCCCCCCCCCCccccccccccCHHHHHHHHHHHcC
Q 007242 287 GSSSGSAAVVAAGLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 366 (611)
Q Consensus 287 GSSgGsaaaVAag~~p~alGtD~gGSiRiPAa~~Gv~GlKPT~Grvs~~g~~~~~~~~~~~Gplarsv~Dla~~~~~i~g 366 (611)
|||||||++||+|++|+|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||||||+|+++++++|+|
T Consensus 164 GSSgGsAaAVAag~~~~alGtDtgGSIRiPAa~cGvvGlKPT~Grvs~~G~~p~~~sld~~Gp~arsv~D~a~~l~vl~g 243 (503)
T 1m22_A 164 GSSSGSAVAVAANLASVAIGTETDGSIVCPAAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMARSVADAAAVLTAIAG 243 (503)
T ss_dssp SSSHHHHHHHHTTSSSEEEEEESSSTTHHHHHHTTSEEEECCTTSSCCTTBCCSCTTTCEEEEEESSHHHHHHHHHHHCC
T ss_pred ccHHHHHHHHHcCCCceeeecCCCchhhhhHHHhCceEEECCCCCcCCCCcCCccCCCCeeCcccCCHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcCCCC---CCcccccccCCCCceEEEEeCCCcCCCCHHHHHHHHHHHHHHHHHcCcEEEEeecCchHHHHHH
Q 007242 367 PLPSQQPTVSLPK---VSFPLLKSATSISAIKLAKYDAWFNDCSDDIRVCCSRAVDKLCERYGWKVVEVTIPNIEVMRLA 443 (611)
Q Consensus 367 ~d~~~~~~~~~p~---~~~p~~~~~~~~~~lrIGv~~~~~~~~~p~V~~a~~~a~~~L~~~~G~eVvei~~p~l~~~~~a 443 (611)
+|+.|..+...|. ..+........++++|||++.+++ .++|+|+++++++++.|++ +||+|+++++|.+.+....
T Consensus 244 ~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~lrIgv~~~~~-~~~~~v~~a~~~a~~~L~~-~G~~v~~~~~p~~~~~~~~ 321 (503)
T 1m22_A 244 RDDADPATATMPGRAVYDYTARLDPQGLRGKRIGLLQTPL-LKYRGMPPLIEQAATELRR-AGAVVVPVELPNQGAWAEA 321 (503)
T ss_dssp CCTTCGGGGGCTTCCCCCGGGGCCTTTTTTCEEEEECSGG-GGSTTHHHHHHHHHHHHHH-TTCEEEEECCTTTTTTHHH
T ss_pred CCCCCccccccccccccchhhhccccCCCCCEEEEECccc-cCCHHHHHHHHHHHHHHHH-cCCEEEEeCCCcHHHHHHH
Confidence 9887632221111 011000011246899999998876 4899999999999999997 8999999999876544445
Q ss_pred HHHHHHHHHHhhhhHHHhhc--------------------cCCCCchhHHHHHHhhcCCCHHHHHHHHHHHHHHHHH--H
Q 007242 444 HYLTIGSECSTSLSSYLQKI--------------------NCSDQGWDARVALSVYGSFSSQEYIKAQKIRNHQMQI--H 501 (611)
Q Consensus 444 ~~~~~~~E~~~~l~~~~~~~--------------------~~~~l~~~~r~~l~~~~~~sa~dy~~a~~~r~~~~~~--~ 501 (611)
+...+..|+...+..++... ....+++.++..+..+..++..+|.++++.|+++.+. +
T Consensus 322 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 401 (503)
T 1m22_A 322 ERTLLLYEFKAGLERYFNTHRAPLRSLADLIAFNQAHSKQELGLFGQELLVEADATAGLADPAYIRARSDARRLAGPEGI 401 (503)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSCCSHHHHHHHHHHTHHHHSSSSCCHHHHHHHTCCCTTCHHHHHHHHHHHHHHTTTTH
T ss_pred HHHHHHHHHHHHHHHHHHhcCcccccHHHHHHHhhhcchhcccccCHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 55666778777666554421 0123455566666666778899999998888887765 8
Q ss_pred HhHhcC--CCEEEeeCCCCCcccccchhhccCcchhhhcccccccchhhhhhCCCceecccccCCCCCceEEEEEeCCCC
Q 007242 502 RNVFAK--ADVIVVPTTGVTAYEIKDDALKTGELDYIYGAALVRYQIAGNFLGLPAVTVPVGYDTAGLPIGLQFIGKPWS 579 (611)
Q Consensus 502 ~~lf~~--~DvIltPttp~~ap~i~~~~~~~g~~~~~~~~~~~~yt~~~Nl~G~PAisvPvG~~~~GlPvGvQivG~~~~ 579 (611)
.++|++ +|+||+||+ .+++++... +.. ..+.||.+||++|+|+||||+|++ +|||+||||||++|+
T Consensus 402 ~~~~~~~~~D~ll~Pt~-~~a~~~~~~----~~~------~~~~~t~~~nl~G~PaisvP~g~~-~GlPvGvqlvg~~~~ 469 (503)
T 1m22_A 402 DAALAAHQLDALVAPTT-GVAWPIRSE----GDD------FPGESYSAAAVAGYPSLTVPMGQI-DGLPVGLLFMGTAWS 469 (503)
T ss_dssp HHHHHHTTCSEEEEECC-CCCCBTTC-------C------CTTCCHHHHHHHTCCEEEEEEEEE-TTEEEEEEEECSTTC
T ss_pred HHHHhhcCCCEEEeCCC-ccCcccccc----cCc------ccccccccchhhCCCeEEeccccC-CCCCeEEEEECCCCC
Confidence 899974 999999999 566766421 111 015789999999999999999997 899999999999999
Q ss_pred hHHHHHHHHHHHHhcccCCCCCCccccc
Q 007242 580 EPTLMHIAFAMQALCISEFRKPKVFHDL 607 (611)
Q Consensus 580 E~~LL~~A~~lE~~~~~~~~~P~~~~d~ 607 (611)
|++||++|+++|+++.+ ++|+.|.+-
T Consensus 470 d~~lL~~A~~~E~~~~~--~~~p~~~~~ 495 (503)
T 1m22_A 470 EPKLIEMAYAYEQRTRA--RRPPHFDTD 495 (503)
T ss_dssp HHHHHHHHHHHHHHHCC--CCCCCCCC-
T ss_pred hHHHHHHHHHHHHhhCC--CCCCCCCCC
Confidence 99999999999998754 445555543
No 5
>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}
Probab=100.00 E-value=4e-98 Score=818.08 Aligned_cols=444 Identities=29% Similarity=0.479 Sum_probs=382.7
Q ss_pred cCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCCCceEEEEecCHHHHHHHHHHHhhhhhcCCCCCCccCcEEEEecCC
Q 007242 136 WTVLDYSKAYSSGDITPRMVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEI 215 (611)
Q Consensus 136 ~si~~~~~~~~sg~lT~~ev~~a~l~~i~~~~~~~~~~~a~~~~~~~~al~~A~~~d~r~~~g~~lgpL~GVPi~vKD~~ 215 (611)
+++.+++++|++|++||+||+++||+||++.+ +.+|||++++ |+++++|+++|+++ |||||||+|||+|
T Consensus 1 ~~a~~l~~~~~~g~~s~~el~~a~l~ri~~~~---~~lna~~~~~-~~al~~A~~~d~~~-------pL~GvPi~vKD~~ 69 (471)
T 3kfu_E 1 MLAHEIRARVARGEVSPLEVAQAYLKRVQELD---PGLGAFLSLN-ERLLEEAEAVDPGL-------PLAGLVVAVKDNI 69 (471)
T ss_dssp -CHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH---HHHCCEEEEC-CTTTHHHHTSCCSC-------TTTTCEEEEETTB
T ss_pred CcHHHHHHHHHcCCCCHHHHHHHHHHHHHHhC---CCccEEEEeC-HHHHHHHHhcCccC-------CcCCCeEEEECCc
Confidence 47899999999999999999999999999986 6799999999 99999999999764 8999999999999
Q ss_pred CCCCccCCccccccccCCCCCCcHHHHHHHHHCCCeEEEecCcCccccCCCCCCCCCCCCCCCCCCCCCCCCCChhhHHH
Q 007242 216 DCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITGGSSSGSAAV 295 (611)
Q Consensus 216 ~v~g~~tt~Gs~~~~~~~~~~~da~~V~~Lr~aGAIi~GKtn~~E~~~~~~~~n~~~G~t~NP~n~~~~~GGSSgGsaaa 295 (611)
+++|++||+||..+.++ .+.+|+++|++||+||||++||||||||+++.++.|++||+|+||||++++|||||||||++
T Consensus 70 ~~~G~~tt~Gs~~~~~~-~~~~da~~V~rL~~aGaii~GKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsaaa 148 (471)
T 3kfu_E 70 ATRGLRTTAGSRLLENF-VPPYEATAVARLKALGALVLGKTNLDEFGMGSSTEHSAFFPTKNPFDPDRVPGGSSGGSAAA 148 (471)
T ss_dssp CCTTSCCCTTCSTTTTC-CCSSCCHHHHHHHTTTCEEEEEECCSGGGCCSSSTTCSSCCCCBTTBTTBCCCSSSHHHHHH
T ss_pred ccCCccccccCHhHcCC-CCCCChHHHHHHHHCCCEEEeecCcCchhcCCCCCCCCCCCcCCCCccCcCCCCCcHHHHHH
Confidence 99999999999988665 45789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCccceeeccCCCcccccccccCcccccCCCCCcCCCCCCCCCCccccccccccCHHHHHHHHHHHcCCCCCCCCCc
Q 007242 296 VAAGLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTV 375 (611)
Q Consensus 296 VAag~~p~alGtD~gGSiRiPAa~~Gv~GlKPT~Grvs~~g~~~~~~~~~~~Gplarsv~Dla~~~~~i~g~d~~~~~~~ 375 (611)
||+|++|+|+|||+|||||+||+||||||||||+||+|+.|++|.++++|++|||||||+|+++++++|+|+|+.|..+.
T Consensus 149 VAag~~~~a~GtDtgGSiR~PAa~cGv~GlKPT~G~v~~~g~~~~~~~~d~~Gp~arsv~D~a~~~~~l~g~d~~d~~~~ 228 (471)
T 3kfu_E 149 LAADLAPLALGSDTGGSVRQPAAFCGVYGLKPTYGRVSRFGLIAYASSLDQIGPMARSVRDLALLMDAAAGPDPLDATSL 228 (471)
T ss_dssp HHTTSCSEEEEEESSSTTHHHHHHTTCEEEECCTTSSCCTTBCCSCTTTCEEEEEESSHHHHHHHHHHHCSCCTTCTTCC
T ss_pred HHCCCCccccccCCCCccccChhhcCceeeeCCCCCccCCCCCCcccccCeecceeCCHHHHHHHHHHhcCCCccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998764332
Q ss_pred CCCCCCcccccccCCCCceEEEEeCCCcCCCCHHHHHHHHHHHHHHHHHcCcEEEEeecCchHHHHHHHHHHHHHHHHhh
Q 007242 376 SLPKVSFPLLKSATSISAIKLAKYDAWFNDCSDDIRVCCSRAVDKLCERYGWKVVEVTIPNIEVMRLAHYLTIGSECSTS 455 (611)
Q Consensus 376 ~~p~~~~p~~~~~~~~~~lrIGv~~~~~~~~~p~V~~a~~~a~~~L~~~~G~eVvei~~p~l~~~~~a~~~~~~~E~~~~ 455 (611)
..| ..+... ....++++|||++.+++..++|+|+++++++++.|++ +||+|+++++|.+++....+...+..|+..+
T Consensus 229 ~~~-~~~~~~-~~~~~~~lrIgv~~~~~~~~~p~v~~a~~~a~~~L~~-~G~~v~~v~~p~~~~~~~~~~~~~~~e~~~~ 305 (471)
T 3kfu_E 229 DLP-PRFQEA-LEGPLPPLRLGVVREALAGNSPGVERALEEALKVFRE-LGLSVREVSWPSLPQALAAYYILAPAEASSN 305 (471)
T ss_dssp CCC-CCTTCC-SCCCCSSCEEEEEGGGTTTCCHHHHHHHHHHHHHHHT-TTCEEEEECCTTGGGHHHHHHHHHHHHHHHH
T ss_pred CCC-cchhhh-hccCCCCCEEEEECCccCCCCHHHHHHHHHHHHHHHH-cCCeeeeecCccHHHHHHHHHHHHHHHHHHH
Confidence 222 111100 0124689999999887766799999999999999996 8999999999988877777778888888776
Q ss_pred hhHHH-----------------hhccCCCCchhHHHHHHhhc-----CCCHHHHHHHHHHHHHHHHHHHhHhcCCCEEEe
Q 007242 456 LSSYL-----------------QKINCSDQGWDARVALSVYG-----SFSSQEYIKAQKIRNHQMQIHRNVFAKADVIVV 513 (611)
Q Consensus 456 l~~~~-----------------~~~~~~~l~~~~r~~l~~~~-----~~sa~dy~~a~~~r~~~~~~~~~lf~~~DvIlt 513 (611)
+..+. .. ....+++.++..+..+. .++..+|.++++.|+++++.+.++|+++|+||+
T Consensus 306 ~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~ 384 (471)
T 3kfu_E 306 LARYDGTLYGRRAAGEEVEGMMEA-TRALFGLEVKRRVLVGTFVLSSGYYEAYYGRAQAFRRRLKAEAQALFREVDLLLL 384 (471)
T ss_dssp GGGCSTTTTSCCCCCSSSHHHHHH-HHTTSCHHHHHHHHHHHHHHSTTTTTTTHHHHHHHHHHHHHHHHHHTTTCSEEEE
T ss_pred HHHhhhhccccccchhhHHHHHHh-hhhhcCHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEe
Confidence 65431 11 11226666665554442 233458999999999999999999999999999
Q ss_pred eCCCCCcccccchhhccCcchhhhcccccccchhhhhhCCCceecccccCCCCCceEEEEEeCCCChHHHHHHHHHHHHh
Q 007242 514 PTTGVTAYEIKDDALKTGELDYIYGAALVRYQIAGNFLGLPAVTVPVGYDTAGLPIGLQFIGKPWSEPTLMHIAFAMQAL 593 (611)
Q Consensus 514 Pttp~~ap~i~~~~~~~g~~~~~~~~~~~~yt~~~Nl~G~PAisvPvG~~~~GlPvGvQivG~~~~E~~LL~~A~~lE~~ 593 (611)
||+|.++|+++... . ... ......||.+||++|+|++|||+|+ .+|||+||||||++|+|+.||++|+++|+.
T Consensus 385 Pt~~~~a~~~~~~~---~--~~~-~~~~~~~t~~~nl~G~PaisvP~g~-~~GlPvGlQlvg~~~~D~~LL~~A~~lE~~ 457 (471)
T 3kfu_E 385 PTTPHPAFPFGARR---D--PLA-MYREDLYTVGANLTGLPALSFPAGF-EGHLPVGLQLLAPWGEDERLLRAALAFEEA 457 (471)
T ss_dssp ESCSSSCCBTTTTC---S--HHH-HHGGGTTTHHHHHHCCCEEEEEEEE-ETTEEEEEEEECSTTCHHHHHHHHHHHHHH
T ss_pred CCcCCCCCcccccc---c--hHH-HHHHhhhhhcchhhCCCeEEEeCCC-CCCCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 99999999986521 0 000 0111239999999999999999999 899999999999999999999999999999
Q ss_pred c-ccCCCCCC
Q 007242 594 C-ISEFRKPK 602 (611)
Q Consensus 594 ~-~~~~~~P~ 602 (611)
. .+.+++|.
T Consensus 458 ~g~w~~~~p~ 467 (471)
T 3kfu_E 458 TARAHLKAPL 467 (471)
T ss_dssp SSCCCCCTTC
T ss_pred hcCcccCCCc
Confidence 8 77777774
No 6
>3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A
Probab=100.00 E-value=3e-97 Score=818.60 Aligned_cols=455 Identities=22% Similarity=0.302 Sum_probs=389.5
Q ss_pred ccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCCCceEEEEecCHHHHHHHHHHHhhhhhcCCCCCCccCcEEEEe
Q 007242 133 FHRWTVLDYSKAYSSGDITPRMVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRYKKGEPISVLDGVLIAVK 212 (611)
Q Consensus 133 ~~~~si~~~~~~~~sg~lT~~ev~~a~l~~i~~~~~~~~~~~a~~~~~~~~al~~A~~~d~r~~~g~~lgpL~GVPi~vK 212 (611)
+.+ |+.+++++|++|++|++||+++||+||++.+ +.+|+|+++++|+++++|++ | .||||||||+||
T Consensus 6 ~~~-~~~~l~~~i~~g~~s~~el~~a~l~ri~~~~---~~lna~~~~~~~~Al~~A~~-d--------~gpL~GvPi~vK 72 (493)
T 3a2q_A 6 LWQ-DATAQAELVRSGEISRTELLEATIAHVQAVN---PEINAVIIPLFEKARRESEL-A--------SGPFAGVPYLLK 72 (493)
T ss_dssp TTS-CHHHHHHHHHHSSSCHHHHHHHHHHHHHHHH---HHHCCEEEECHHHHHHHHHH-C--------CSTTTTCEEEEE
T ss_pred hhh-hHHHHHHHHHcCCCCHHHHHHHHHHHHHHhC---CccCeEEecCHHHHHHHhhh-c--------CCCcCCcEEEEe
Confidence 345 9999999999999999999999999999876 67999999999999999998 7 389999999999
Q ss_pred cCC-CCCCccCCccccccc--cCCCCCCcHHHHHHHHHCCCeEEEecCcCccccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 007242 213 DEI-DCSPYPTTGGTKWLH--KVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITGGSS 289 (611)
Q Consensus 213 D~~-~v~g~~tt~Gs~~~~--~~~~~~~da~~V~~Lr~aGAIi~GKtn~~E~~~~~~~~n~~~G~t~NP~n~~~~~GGSS 289 (611)
|+| +++|++||+||..+. ++ ++.+|+++|++||+||||++||||||||+++.+|.|++||+|+||||++++|||||
T Consensus 73 D~~~~v~G~~Tt~Gs~~~~~~~~-~~~~dA~vV~rLr~AGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSS 151 (493)
T 3a2q_A 73 DLTVVSQGDINTSSIKGMKESGY-RADHDAYFVQRMRAAGFVLLGKTNTPEMGNQVTTEPEAWGATRNPWNLGRSVGGSS 151 (493)
T ss_dssp SSSSCCTTSBCCTTCHHHHHHTC-BCSSCCHHHHHHHHHTCEEEEEECCSGGGCSSSCCCTTTCCCCBTTBTTBCCCSSS
T ss_pred cCCcCcCCCcccccChhhhhcCC-CCCCCHHHHHHHHHCCCceEEEcChhhhhcCCCCCCCCCCCCCCCCCCCCCCCcCc
Confidence 999 999999999999876 54 45789999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHhCCccceeeccCCCcccccccccCcccccCCCCCcCCCCC--C-CCCCccccccccccCHHHHHHHHHHHcC
Q 007242 290 SGSAAVVAAGLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGV--L-PLNWTVGMVGILAATVEDALVVYAAING 366 (611)
Q Consensus 290 gGsaaaVAag~~p~alGtD~gGSiRiPAa~~Gv~GlKPT~Grvs~~g~--~-~~~~~~~~~Gplarsv~Dla~~~~~i~g 366 (611)
||||++||+|++|+|+|||+|||||+||+||||||||||+||||..|+ . +.++++|++|||||||+|+++++++|.|
T Consensus 152 gGsAAAVAaG~~~~alGtDtgGSIRiPAa~cGv~GlKPT~Grvs~~g~~~~~~~~~sld~~Gp~arsv~D~a~~l~~l~g 231 (493)
T 3a2q_A 152 GGSGAAVAAALSPVAHGNDAAGAVRIPASVCGVVGLKPTRGRISPGPLVTDSDNVAGAAHEGLFARSVRDIAALLDVVSG 231 (493)
T ss_dssp HHHHHHHHTTSCSEEEEEESSSTTHHHHHHHTSEEEECSTTSBCCCSSCCHHHHHHTTCEEEEEESSHHHHHHHHHHHBS
T ss_pred HHHHHHHHcCCCceeeecCCCcccccchhhcCcceEEcCCCccCCCCCcccccccccCceecCccCCHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999999999987 4 7778899999999999999999999999
Q ss_pred CCCCCCCCcCCCCCCcccccc-cCCCCceEEEEeCCCc---CCCCHHHHHHHHHHHHHHHHHcCcEEEEeecCchH--HH
Q 007242 367 PLPSQQPTVSLPKVSFPLLKS-ATSISAIKLAKYDAWF---NDCSDDIRVCCSRAVDKLCERYGWKVVEVTIPNIE--VM 440 (611)
Q Consensus 367 ~d~~~~~~~~~p~~~~p~~~~-~~~~~~lrIGv~~~~~---~~~~p~V~~a~~~a~~~L~~~~G~eVvei~~p~l~--~~ 440 (611)
+|+.|..+...|. .++... ....+++|||++.+++ ..++|+|+++++++++.|++ +||+|+++++|.+. +.
T Consensus 232 ~d~~d~~~~~~p~--~~~~~~~~~~~~~lrIgv~~~~~~~~~~~~~~v~~a~~~a~~~L~~-~G~~v~~~~~~~~~~~~~ 308 (493)
T 3a2q_A 232 HRPGDTFCAPTAS--RPYAQGISENPGSLRVGVLTHNPVGDFALDPECAAAARGAAAALAA-LGHDVNDAYPEALGDRSF 308 (493)
T ss_dssp CCTTCSCCCCCCS--SCHHHHTTSCCCSCEEEECCSCTTCSSCCCHHHHHHHHHHHHHHHH-TTCEEEECCCGGGGCCTH
T ss_pred CCCCCcccccCCC--cchhhhcccCCCCCEEEEECCccccCCCCCHHHHHHHHHHHHHHHH-CCCEEEEeCCCccCHHHH
Confidence 9887643222221 122211 1236889999988764 36799999999999999997 89999999988444 44
Q ss_pred HHHHHHHHHHHHHhhhhHHHhh----ccCCCCchhHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHhHh-cCCCEEEeeC
Q 007242 441 RLAHYLTIGSECSTSLSSYLQK----INCSDQGWDARVALSVYGSFSSQEYIKAQKIRNHQMQIHRNVF-AKADVIVVPT 515 (611)
Q Consensus 441 ~~a~~~~~~~E~~~~l~~~~~~----~~~~~l~~~~r~~l~~~~~~sa~dy~~a~~~r~~~~~~~~~lf-~~~DvIltPt 515 (611)
...+...+..|++..+..+.+. .....+.+.++.++..+..++..+|.++++.|+++++.+.++| +++|+||+||
T Consensus 309 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~~D~ll~Pt 388 (493)
T 3a2q_A 309 LKDYSTICDVAIAREIERNGELIGRPLTEDDVEWTSWEMVKRADQVTGRAFAACVDELRYYAGKVERWWEAGWDLLILPT 388 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSCCCTTTSCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCccChhhcCHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEcCC
Confidence 4556666778887744433221 1234577888888888899999999999999999999999999 9999999999
Q ss_pred CCCCcccccchhhc-----cCc-ch-hhhcccccccchhhhhhCCCceecccccCCCCCceEEEEEeCCCChHHHHHHHH
Q 007242 516 TGVTAYEIKDDALK-----TGE-LD-YIYGAALVRYQIAGNFLGLPAVTVPVGYDTAGLPIGLQFIGKPWSEPTLMHIAF 588 (611)
Q Consensus 516 tp~~ap~i~~~~~~-----~g~-~~-~~~~~~~~~yt~~~Nl~G~PAisvPvG~~~~GlPvGvQivG~~~~E~~LL~~A~ 588 (611)
+|.++|+++..... .+. .+ ......++.||.+||++|+|++|||+|++.+|||+||||||++|+|+.||++|+
T Consensus 389 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~~GlPvGvQlvg~~~~d~~lL~~A~ 468 (493)
T 3a2q_A 389 VTRQTPEIGELMLAKGTDLEGRQSAFISGSLQMLAFTVPFNVSGQPAISLPIGMSSDGMPIGVQIVAAYGREDLLLQVAA 468 (493)
T ss_dssp CSSCCCBTTTTCCCTTCCCCSSCGGGSHHHHHHHTTTTHHHHHCCCEEEEEEEECTTSCEEEEEEEESTTCHHHHHHHHH
T ss_pred CCCCCCCCcccccccccccccccchhhhhhhhhhcccccccccCCCceeccCCcCCCCCCeEEEEecCCCChHHHHHHHH
Confidence 99999998753210 000 00 111223467999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccCCCCCCcc
Q 007242 589 AMQALCISEFRKPKVF 604 (611)
Q Consensus 589 ~lE~~~~~~~~~P~~~ 604 (611)
++|+.+.+.+++|+++
T Consensus 469 ~lE~~~~~~~~~p~~~ 484 (493)
T 3a2q_A 469 QLEGALPWVARRPQLL 484 (493)
T ss_dssp HHHHHSCCTTCCCGGG
T ss_pred HHHHhcCcccCCCCCC
Confidence 9999987777888764
No 7
>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural genomics, joint center for structura genomics, JCSG; HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP: c.117.1.1 PDB: 3al0_A*
Probab=100.00 E-value=1.5e-94 Score=793.72 Aligned_cols=436 Identities=28% Similarity=0.429 Sum_probs=365.9
Q ss_pred cccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCCCceEEEEecCHHHHHHHHHHHhhhhhcCCCCCCccCcEEEE
Q 007242 132 FFHRWTVLDYSKAYSSGDITPRMVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRYKKGEPISVLDGVLIAV 211 (611)
Q Consensus 132 ~~~~~si~~~~~~~~sg~lT~~ev~~a~l~~i~~~~~~~~~~~a~~~~~~~~al~~A~~~d~r~~~g~~lgpL~GVPi~v 211 (611)
++.++|+.++ |++|++|++||+++||+||++.+ +.+|+|+++++|+++ |+ + ||||||||+|
T Consensus 6 ~~~~~s~~~l---i~~g~~s~~el~~a~l~ri~~~~---~~lna~~~~~~~~al------d~-----~--gpL~GvPi~v 66 (476)
T 2gi3_A 6 DFRKLTIEEC---LKLSEEEREKLPQLSLETIKRLD---PHVKAFISVRENVSV------EK-----K--GKFWGIPVAI 66 (476)
T ss_dssp CGGGCCHHHH---TTSCHHHHTTHHHHHHHHHHHHH---HHHCCEEEECCCCCC------CC-----C--STTTTCEEEE
T ss_pred ccccCCHHHH---HHcCCCCHHHHHHHHHHHHHHhC---CceeEEEecChhhhh------hc-----c--CCcCCceEEE
Confidence 3456789998 99999999999999999999886 679999999988776 32 2 8999999999
Q ss_pred ecCCCCCCccCCccccccccCCCCCCcHHHHHHHHHCCCeEEEecCcCccccCCCCCCCCCCCCCCCCCCCCCCCCCChh
Q 007242 212 KDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITGGSSSG 291 (611)
Q Consensus 212 KD~~~v~g~~tt~Gs~~~~~~~~~~~da~~V~~Lr~aGAIi~GKtn~~E~~~~~~~~n~~~G~t~NP~n~~~~~GGSSgG 291 (611)
||+|+++|++||+||..+.+. ++.+||++|++||+||||++||||||||+++.+|.|++||+|+||||+.++|||||||
T Consensus 67 KD~~~v~G~~Tt~Gs~~~~~~-~~~~dA~vV~rLr~AGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSSgG 145 (476)
T 2gi3_A 67 KDNILTLGMRTTCASRILENY-ESVFDATVVKKMKEAGFVVVGKANLDEFAMGSSTERSAFFPTRNPWDLERVPGGSSGG 145 (476)
T ss_dssp ETTBCCSSSCCCTTCGGGTTC-CCCSCCHHHHHHHHHTCEEEEEECCSGGGCCSSSTTCSSCCCCBTTBTTBCCCSSSHH
T ss_pred EcCccCCCCccCccChhhcCC-CCCCChHHHHHHHHCCCEEEEecCchhhhcCCCCCCCCCCCCCCCCCCCCCCCcchHH
Confidence 999999999999999988655 4578999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhCCccceeeccCCCcccccccccCcccccCCCCCcCCCCCCCCCCccccccccccCHHHHHHHHHHHcCCCCCC
Q 007242 292 SAAVVAAGLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQ 371 (611)
Q Consensus 292 saaaVAag~~p~alGtD~gGSiRiPAa~~Gv~GlKPT~Grvs~~g~~~~~~~~~~~Gplarsv~Dla~~~~~i~g~d~~~ 371 (611)
||++||+|++|+|+|||+|||||+||+||||||||||+||||+.|++|+++++|++|||||||+|+++++++|+|+|+.|
T Consensus 146 sAaAVAag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~G~vs~~G~~p~~~sld~~Gp~arsv~D~a~~l~~l~g~d~~d 225 (476)
T 2gi3_A 146 SAAAVSAGMVVAALGSDTGGSVRQPASLCGVVGYKPTYGLVSRYGLVAFASSLDQIGPITKTVRDAAILMEIISGRDEND 225 (476)
T ss_dssp HHHHHHTTSSSEEEEEESSSTTHHHHHHHTSEEEECCTTSBCCTTBCCSCTTTCEEEEEESSHHHHHHHHHHHBSCBTTB
T ss_pred HHHHHHcCCCceEeecCCCchhhhhHHHcCCeEEeCCCCcCCCCCCCCcccCCCeeeeeeCCHHHHHHHHHHhhCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred CCCcCCCCCCcccccc-cCCCCceEEEEeCCCc-CCCCHHHHHHHHHHHHHHHHHcCcEEEEeecCchHHHHHHHHHHHH
Q 007242 372 QPTVSLPKVSFPLLKS-ATSISAIKLAKYDAWF-NDCSDDIRVCCSRAVDKLCERYGWKVVEVTIPNIEVMRLAHYLTIG 449 (611)
Q Consensus 372 ~~~~~~p~~~~p~~~~-~~~~~~lrIGv~~~~~-~~~~p~V~~a~~~a~~~L~~~~G~eVvei~~p~l~~~~~a~~~~~~ 449 (611)
..+...|. ++... ...++++|||++.+++ ..++|+|+++++++++.|++ +||+|+++++|.+......+...+.
T Consensus 226 ~~~~~~p~---~~~~~~~~~~~~lrig~~~~~~~~~~~~~v~~a~~~a~~~L~~-~G~~v~~~~~p~~~~~~~~~~~~~~ 301 (476)
T 2gi3_A 226 ATTVNRKV---DFLSEIEEGVSGMKFAVPEEIYEHDIEEGVSERFEEALKLLER-LGAKVERVKIPHIKYSVATYYVIAP 301 (476)
T ss_dssp TTCCSCCC---CSSTTTTSCCTTCEEEEEGGGGGSCCCHHHHHHHHHHHHHHHH-TTCEEEEECCTTGGGHHHHHHHHHH
T ss_pred ccccCCCc---chhhhhhcCCCCCEEEEECccccCCCCHHHHHHHHHHHHHHHH-CCCEEEEeCCCchHHHHHHHHHHHH
Confidence 43222221 11110 1246889999998876 56799999999999999997 8999999999987666566666677
Q ss_pred HHHHhhhhHHH-----------------hhccCCCCchhHHHHHHhhcCCCH-----HHHHHHHHHHHHHHHHHHhHhcC
Q 007242 450 SECSTSLSSYL-----------------QKINCSDQGWDARVALSVYGSFSS-----QEYIKAQKIRNHQMQIHRNVFAK 507 (611)
Q Consensus 450 ~E~~~~l~~~~-----------------~~~~~~~l~~~~r~~l~~~~~~sa-----~dy~~a~~~r~~~~~~~~~lf~~ 507 (611)
.|+...+..+. .......+.+.++..+..+..++. .+|.++++.|+++++.+.++|++
T Consensus 302 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~ 381 (476)
T 2gi3_A 302 AEASSNLARFDGVKYGLRIKEKGLREMYMKTRNVGFGEEVRRRIMIGTFTLSAAYYEAYFNKAMKVRRKISDELNEVLSQ 381 (476)
T ss_dssp HHHHTC------------------------CCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccccccccccccHHHHHHhhhhhhcCHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 78776653321 111123355666655555543332 37889999999999999999999
Q ss_pred CCEEEeeCCCCCcccccchhhccCcchhhhcccccccchhhhhhCCCceecccccCCCCCceEEEEEeCCCChHHHHHHH
Q 007242 508 ADVIVVPTTGVTAYEIKDDALKTGELDYIYGAALVRYQIAGNFLGLPAVTVPVGYDTAGLPIGLQFIGKPWSEPTLMHIA 587 (611)
Q Consensus 508 ~DvIltPttp~~ap~i~~~~~~~g~~~~~~~~~~~~yt~~~Nl~G~PAisvPvG~~~~GlPvGvQivG~~~~E~~LL~~A 587 (611)
+|+||+||+|.++|+++.. +. .. .......||.++|++|+|++|||+|++ +|||+||||||++|+|+.||++|
T Consensus 382 ~D~ll~Pt~~~~a~~~~~~----~~-~~-~~~~~~~~t~~~nl~G~PaisvP~g~~-~GlPvGvqlvg~~~~d~~lL~~A 454 (476)
T 2gi3_A 382 YDAILTPTSPVTAFKIGEI----KD-PL-TYYLMDIFTIPANLAGLPAISVPFGFS-NNLPVGVQVIGRRFADGKVFRIA 454 (476)
T ss_dssp SSEEEEESCSSCCCBTTTC----CC-HH-HHHTTTTTTHHHHHHTCCEEEEEEEEE-TTEEEEEEEECCTTCHHHHHHHH
T ss_pred CCEEEeCCCCCCCCccccc----cc-ch-hhhhccceeccccccCCceEEEecccC-CCCCeEEEEEcCCCCHHHHHHHH
Confidence 9999999999999998641 10 00 011124689999999999999999997 79999999999999999999999
Q ss_pred HHHHHhcccCC
Q 007242 588 FAMQALCISEF 598 (611)
Q Consensus 588 ~~lE~~~~~~~ 598 (611)
+++|+++.+.+
T Consensus 455 ~~lE~~~~~~~ 465 (476)
T 2gi3_A 455 RAIEKNSPYNE 465 (476)
T ss_dssp HHHHHHCTTSB
T ss_pred HHHHHhcCccc
Confidence 99999976543
No 8
>1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP: c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A 1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A
Probab=100.00 E-value=4.3e-93 Score=767.62 Aligned_cols=408 Identities=26% Similarity=0.366 Sum_probs=364.2
Q ss_pred cCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCCCceEEEEecCHHHHHHHHHHHhhhhhcCCCCCCccCcEEEEecCC
Q 007242 136 WTVLDYSKAYSSGDITPRMVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEI 215 (611)
Q Consensus 136 ~si~~~~~~~~sg~lT~~ev~~a~l~~i~~~~~~~~~~~a~~~~~~~~al~~A~~~d~r~~~g~~lgpL~GVPi~vKD~~ 215 (611)
+|+.+++++|++|++|++||+++||+||++.+ +.+|+|+++++|++ + ++.||||||||+|||+|
T Consensus 2 ~~~~~l~~~i~~g~~s~~el~~a~l~ri~~~~---~~lna~~~~~~~~a-~------------~~~gpL~GvPi~vKD~~ 65 (414)
T 1o9p_A 2 ISLADLQRRIETGELSPNAAIAQSHAAIEARE---KEVHAFVRHDKSAR-A------------QASGPLRGIAVGIKDII 65 (414)
T ss_dssp CCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH---HHHCCEEEECTTCC-C------------CSSSTTTTCEEEEETTB
T ss_pred CCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhC---ccccEEEEeCHHHh-c------------ccCCCcCCCEEEEEccc
Confidence 58999999999999999999999999999876 67999999998865 1 45799999999999999
Q ss_pred CCCCccCCccccccccCCCCCCcHHHHHHHHHCCCeEEEecCcCccccCCCCCCCCCCCCCCCCCCCCCCCCCChhhHHH
Q 007242 216 DCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITGGSSSGSAAV 295 (611)
Q Consensus 216 ~v~g~~tt~Gs~~~~~~~~~~~da~~V~~Lr~aGAIi~GKtn~~E~~~~~~~~n~~~G~t~NP~n~~~~~GGSSgGsaaa 295 (611)
|++|++||+||..+.+. ++.+|+++|++||+||||++||||||||++ .|+ |+|+||||++++|||||||||++
T Consensus 66 ~v~G~~tt~Gs~~~~~~-~~~~dA~~V~rL~~aGAii~GKTn~~Efa~----~n~--G~t~NP~~~~~~pGGSSgGsAaa 138 (414)
T 1o9p_A 66 DTANMPTEMGSEIYRGW-QPRSDAPVVMMLKRAGATIIGKTTTTAFAS----RDP--TATLNPHNTGHSPGGASSGSAAA 138 (414)
T ss_dssp CCSSSCCCTTSGGGTTC-CCSSCCHHHHHHHHTTCEEEEEECCCGGGS----SCC--CSCCBTTBTTBCCCSSSHHHHHH
T ss_pred ccCCcccCcCCHhhccC-CCCCCHHHHHHHHHCCCEEEEecCCchhhc----CCC--CCCCCCCCCCCCCCcchHHHHHH
Confidence 99999999999988665 456899999999999999999999999998 455 99999999999999999999999
Q ss_pred HHhCCccceeeccCCCcccccccccCcccccCCCCCcCCCCCCCCCCccccccccccCHHHHHHHHHHHcCCCCCCCCCc
Q 007242 296 VAAGLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTV 375 (611)
Q Consensus 296 VAag~~p~alGtD~gGSiRiPAa~~Gv~GlKPT~Grvs~~g~~~~~~~~~~~Gplarsv~Dla~~~~~i~g~d~~~~~~~ 375 (611)
||+|++|+|+|||+|||||+||+||||||||||+||+|+.|++|+++++|++|||||||+|+++++++|.|++. .
T Consensus 139 VAag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~G~vs~~G~~~~~~s~d~~Gp~arsv~D~a~~~~~l~g~~~--~--- 213 (414)
T 1o9p_A 139 VGAGMIPLALGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAMTGRSE--F--- 213 (414)
T ss_dssp HHTTSCSEEEEEESSSTTHHHHHHHTCEEEECSTTSSCCTTBCCSCTTTCEEEEEESSHHHHHHHHHHHHCCGG--G---
T ss_pred HHcCCCceEEeeCCchhhhHhHHHhCCeeEECCCCCCCCCCCCCCCCccCeeccccCCHHHHHHHHHHhcCCCc--c---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998641 0
Q ss_pred CCCCCCcccccccCCCCceEEEEeCCCc-CCCCHHHHHHHHHHHHHHHHHcCcEEEEeecCc-hHHHHHHHHHHHHHHHH
Q 007242 376 SLPKVSFPLLKSATSISAIKLAKYDAWF-NDCSDDIRVCCSRAVDKLCERYGWKVVEVTIPN-IEVMRLAHYLTIGSECS 453 (611)
Q Consensus 376 ~~p~~~~p~~~~~~~~~~lrIGv~~~~~-~~~~p~V~~a~~~a~~~L~~~~G~eVvei~~p~-l~~~~~a~~~~~~~E~~ 453 (611)
.+ ....+++|||++.+++ ..++|+++++++++++.|++ +||+|+++++|. ++.+...+...+..|..
T Consensus 214 -~~---------~~~~~~lrig~~~~~~~~~~~~~v~~a~~~a~~~L~~-~G~~v~~~~~~~~~~~~~~~~~~~~~~e~~ 282 (414)
T 1o9p_A 214 -SG---------IVPAKAPRIGVVRQEFAGAVEPAAEQGLQAAIKAAER-AGASVQAIDLPEAVHEAWRIHPIIQDFEAH 282 (414)
T ss_dssp -SS---------CCCCSSCEEEECCCGGGCCCCHHHHHHHHHHHHHHHH-TTCEEEECCCCHHHHHHHHHHHHHHHHHHH
T ss_pred -cc---------ccCCCCCEEEEECccccCCCCHHHHHHHHHHHHHHHH-CCCEEEEecCcchHHHHHHHHHHHHHHHHH
Confidence 00 1125789999987754 46799999999999999997 899999999885 35555566667788998
Q ss_pred hhhhHHHhhccCCCCchhHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHhHhcCCCEEEeeCCCCCcccccchhhccCcc
Q 007242 454 TSLSSYLQKINCSDQGWDARVALSVYGSFSSQEYIKAQKIRNHQMQIHRNVFAKADVIVVPTTGVTAYEIKDDALKTGEL 533 (611)
Q Consensus 454 ~~l~~~~~~~~~~~l~~~~r~~l~~~~~~sa~dy~~a~~~r~~~~~~~~~lf~~~DvIltPttp~~ap~i~~~~~~~g~~ 533 (611)
..+..+++. ....+.+.++.++..+..++..+|.++++.|+++++.+.++|+++|+||+||+|.++|+++... .+
T Consensus 283 ~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~--~~-- 357 (414)
T 1o9p_A 283 RALAWEFSE-HHDEIAPMLRASLDATVGLTPKEYDEARRIGRRGRRELGEVFEGVDVLLTYSAPGTAPAKALAS--TG-- 357 (414)
T ss_dssp HHTHHHHHH-SGGGSCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHTTTCSEEEEESSSSSCCBGGGCC--CC--
T ss_pred HHHHHHHHh-ChhhcCHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCCCCCcccccC--Cc--
Confidence 888877765 3456788888888889999999999999999999999999999999999999999999885421 11
Q ss_pred hhhhcccccccchhhhhhCCCceecccccCCCCCceEEEEEeCCCChHHHHHHHHHHHHhcc
Q 007242 534 DYIYGAALVRYQIAGNFLGLPAVTVPVGYDTAGLPIGLQFIGKPWSEPTLMHIAFAMQALCI 595 (611)
Q Consensus 534 ~~~~~~~~~~yt~~~Nl~G~PAisvPvG~~~~GlPvGvQivG~~~~E~~LL~~A~~lE~~~~ 595 (611)
...||.+||++|+|++|||+|++. |+|+||||||++|+|+.||++|+++|+++.
T Consensus 358 -------~~~~t~~~nl~G~PaisvP~g~~~-GlPvGvqlvg~~~~d~~lL~~a~~le~~~~ 411 (414)
T 1o9p_A 358 -------DPRYNRLWTLMGNPCVNVPVLKVG-GLPIGVQVIARFGNDAHALATAWFLEDALA 411 (414)
T ss_dssp -------CGGGTHHHHHHCCCEEEEEEEEET-TEEEEEEEEESTTCHHHHHHHHHHHHHHHH
T ss_pred -------ccchhhhhHhcCCCeEEeeCCCCC-CCCeEEEEECCCCChHHHHHHHHHHHHHhc
Confidence 136899999999999999999988 999999999999999999999999999864
No 9
>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH, oxazole, oxadiazole, endoca degradation, membrane protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB: 2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A* 2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A* 3qj9_A* 3qkv_A*
Probab=100.00 E-value=1.1e-90 Score=771.40 Aligned_cols=442 Identities=23% Similarity=0.296 Sum_probs=356.6
Q ss_pred cccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCCCceEEEEecCHHHHHHHHHHHhhhhhcCCCCCCccCcEEEE
Q 007242 132 FFHRWTVLDYSKAYSSGDITPRMVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRYKKGEPISVLDGVLIAV 211 (611)
Q Consensus 132 ~~~~~si~~~~~~~~sg~lT~~ev~~a~l~~i~~~~~~~~~~~a~~~~~~~~al~~A~~~d~r~~~g~~lgpL~GVPi~v 211 (611)
.+.++|+.+++++|++|++|++||+++||+||++.+ +.+|||+++..+ ++++|+++++ .||||||||+|
T Consensus 67 ~i~~~~~~~l~~~l~~g~~s~~ev~~a~l~ri~~~~---~~~na~~~~~~~-a~~~a~~~~~-------~gpL~GvPi~v 135 (573)
T 3ppm_A 67 ALLTLPLLQLVQKLQSGELSPEAVFFTYLGKAWEVN---KGTNCVTSYLTD-CETQLSQAPR-------QGLLYGVPVSL 135 (573)
T ss_dssp HHHHSCHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH---HHHCCEEEECTT-HHHHHHHCCT-------TCTTTTCEEEE
T ss_pred hhhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhC---CccCEEEEECHH-HHHHHHhhhh-------cCCcCCCeEEE
Confidence 355789999999999999999999999999999876 679999999866 5666666543 28999999999
Q ss_pred ecCCCCCCccCCccccccccCCCCCCcHHHHHHHHHCCCeEEEecCcCccccCCCCCCCCCCCCCCCCCCCCCCCCCChh
Q 007242 212 KDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITGGSSSG 291 (611)
Q Consensus 212 KD~~~v~g~~tt~Gs~~~~~~~~~~~da~~V~~Lr~aGAIi~GKtn~~E~~~~~~~~n~~~G~t~NP~n~~~~~GGSSgG 291 (611)
||+|+++|++||+|+..+.+. ++.+||++|++||+||||++||||||||+|+.++.|++||+|+||||++++|||||||
T Consensus 136 KD~~~~~G~~tt~Gs~~~~~~-~~~~da~vV~~L~~aGAv~~gKTn~pe~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgG 214 (573)
T 3ppm_A 136 KECFSYKGHDSTLGLSLNEGM-PSESDCVVVQVLKLQGAVPFVHTNVPQSMFSYDCSNPLFGQTMNPWKSSKSPGGSSGG 214 (573)
T ss_dssp ETTBCCBTCCCCTTCGGGTTC-CBSSCCHHHHHHHHTTCEEEEEECCCTTSCSSSCEETTTEECCCTTCTTBCCCSSSHH
T ss_pred EcccCCCCCCcCCcChhhcCC-CCCcchHHHHHHHHCCCEEEEecCCccccccCCCCCCCCCCcCCCCCCCCCCCCCCch
Confidence 999999999999999987654 5688999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhCCccceeeccCCCcccccccccCcccccCCCCCcCCCCCCCCCCc----cccccccccCHHHHHHHHHHHcCC
Q 007242 292 SAAVVAAGLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWT----VGMVGILAATVEDALVVYAAINGP 367 (611)
Q Consensus 292 saaaVAag~~p~alGtD~gGSiRiPAa~~Gv~GlKPT~Grvs~~g~~~~~~~----~~~~Gplarsv~Dla~~~~~i~g~ 367 (611)
|||+||+|++++|+|||+|||||+||+||||||||||+||+|+.|+.+.+++ +|++|||||||+|+++++++|+|.
T Consensus 215 saaaVAag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~Grvs~~G~~~~~~~~~~~~~~~Gp~arsv~D~a~~l~~l~~~ 294 (573)
T 3ppm_A 215 EGALIGSGGSPLGLGTDIGGSIRFPSAFCGICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMARDVESLALCLKALLCE 294 (573)
T ss_dssp HHHHHHTTSCSEEEEEESSSTTHHHHHHHTCEEEECCGGGSCCTTBCCSCCSCCSSCCEEEEEESSHHHHHHHHHHHSSH
T ss_pred HHHHHHcCCCcEEEecCCCcchhhhhHHhCeeEEeCCCCcccCCCCCCcccccCcccccccceeCcHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999988765 789999999999999999999986
Q ss_pred CCCCCCCcCCCC-CCcccccc-cCCCCceEEEEeCCC-cCCCCHHHHHHHHHHHHHHHHHcCcEEEEeecCchHHHHHHH
Q 007242 368 LPSQQPTVSLPK-VSFPLLKS-ATSISAIKLAKYDAW-FNDCSDDIRVCCSRAVDKLCERYGWKVVEVTIPNIEVMRLAH 444 (611)
Q Consensus 368 d~~~~~~~~~p~-~~~p~~~~-~~~~~~lrIGv~~~~-~~~~~p~V~~a~~~a~~~L~~~~G~eVvei~~p~l~~~~~a~ 444 (611)
|+ +..+|. ...||... ....+++|||++.+. +...+|+|+++++++++.|++ +||+|+++++|.+.+.....
T Consensus 295 d~----~~~d~~~~~~~~~~~~~~~~~~lrigv~~~~~~~~~~p~v~~a~~~a~~~L~~-~G~~v~~~~~p~~~~~~~~~ 369 (573)
T 3ppm_A 295 HL----FTLDPTVPPLPFREEVYRSSRPLRVGYYETDNYTMPSPAMRRALIETKQRLEA-AGHTLIPFLPNNIPYALEVL 369 (573)
T ss_dssp HH----HHHCTTSCCCCCCHHHHTCCCCCEEEECSCCSSSCCCHHHHHHHHHHHHHHHH-TTCEEEECCCTTHHHHHHTH
T ss_pred cc----cccCCCCCccccchhhcccCCCCEEEEEcccCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEecCccHHHHHHHH
Confidence 63 111121 12333321 134689999998654 345799999999999999997 89999999999876543222
Q ss_pred H-HHHHHHHHhhhhHHHhhccC-------------------------CCCchhHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 007242 445 Y-LTIGSECSTSLSSYLQKINC-------------------------SDQGWDARVALSVYGSFSSQEYIKAQKIRNHQM 498 (611)
Q Consensus 445 ~-~~~~~E~~~~l~~~~~~~~~-------------------------~~l~~~~r~~l~~~~~~sa~dy~~a~~~r~~~~ 498 (611)
+ ..+..|....+...++.... ..+.+.....+..+...+..+|.+.+..|..++
T Consensus 370 ~~~~~~~dg~~~~~~~~~~e~~~p~~~~~~~~~~lp~~l~~~~~~~~~~~~p~~~~~~~~~~~~s~~e~~~~~~~r~~~r 449 (573)
T 3ppm_A 370 STGGLFSDGGRSFLQNFKGDFVDPCLGDLILILRLPSWFKRLLSLLLKPLFPRLAAFLNNMRPRSAEKLWKLQHEIEMYR 449 (573)
T ss_dssp HHHHHTTBTTHHHHGGGTTSCCCGGGTTHHHHHTSCHHHHHHHHHHHTTTCHHHHHHHHHTSBCBHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHhccCcccHHHHHHhhhccchHHHHHHHHHHhhhcchHHHHHHhhcccccHHHHHHHHHHHHHHH
Confidence 1 22223332222211110000 111122223334456678889998888888888
Q ss_pred HHHHhHhc--CCCEEEeeCCCCCcccccchhhccCcchhhhcccccccchhhhhhCCCceecccccC-------------
Q 007242 499 QIHRNVFA--KADVIVVPTTGVTAYEIKDDALKTGELDYIYGAALVRYQIAGNFLGLPAVTVPVGYD------------- 563 (611)
Q Consensus 499 ~~~~~lf~--~~DvIltPttp~~ap~i~~~~~~~g~~~~~~~~~~~~yt~~~Nl~G~PAisvPvG~~------------- 563 (611)
+.+.+.|+ ++|+||||+ +.+|++++... .......||.+||++||||++||+|+.
T Consensus 450 ~~~~~~w~~~~lDaLL~Pt-~~pA~~h~~~~---------~~~~~~~YT~l~NLLDyPA~vVPvg~v~~~~d~~~~~~~~ 519 (573)
T 3ppm_A 450 QSVIAQWKAMNLDVLLTPM-LGPALDLNTPG---------RATGAVSYTMLYNCLDFPAGVVPVTTVTAEDDAQMELYKG 519 (573)
T ss_dssp HHHHHHHHHTTCSEEEEEC-CCSCCBTTCGG---------GCGGGGHHHHHHHHTTCCEEEEEEEECCHHHHHHHTTCCC
T ss_pred HHHHHHHhhcCCCEeeCCC-CCCCcCCcccc---------ccccccchhhhhHhhCCCeEEEeccccccccccccccccc
Confidence 88888885 599999999 45888775310 011236799999999999999999964
Q ss_pred ----------------CCCCceEEEEEeCCCChHHHHHHHHHHHHhcccCCCCC
Q 007242 564 ----------------TAGLPIGLQFIGKPWSEPTLMHIAFAMQALCISEFRKP 601 (611)
Q Consensus 564 ----------------~~GlPvGvQivG~~~~E~~LL~~A~~lE~~~~~~~~~P 601 (611)
.+|+||||||||++|+|++||++|+++|+++... ++|
T Consensus 520 ~~~~~~d~~~~~~~~~~~GlPVgVQiVGrr~~EEklL~~a~~IE~~l~~~-~~~ 572 (573)
T 3ppm_A 520 YFGDIWDIILKKAMKNSVGLPVAVQCVALPWQEELCLRFMREVEQLMTPQ-KQP 572 (573)
T ss_dssp SSCSHHHHHHHHHTCSCTTCEEEEEEECCTTCHHHHHHHHHHHHHHHCTT-SCC
T ss_pred ccchhhhhhhhhhhhccCCCceEEEEeCCCCcHHHHHHHHHHHHHHHhcc-cCC
Confidence 2699999999999999999999999999997654 444
No 10
>3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB: 3a1i_A
Probab=100.00 E-value=2.4e-91 Score=773.44 Aligned_cols=449 Identities=23% Similarity=0.329 Sum_probs=356.8
Q ss_pred cCHHHHHHHHHcCCCCH-HHHHHHHHHHHHhhCCCCCceEEEE-ecCHHHHHHHHHHHhhh---------hhcCCCCCCc
Q 007242 136 WTVLDYSKAYSSGDITP-RMVAERFIAAVRESSNPPMKMSFFI-NYNEEDILKQATESTLR---------YKKGEPISVL 204 (611)
Q Consensus 136 ~si~~~~~~~~sg~lT~-~ev~~a~l~~i~~~~~~~~~~~a~~-~~~~~~al~~A~~~d~r---------~~~g~~lgpL 204 (611)
.++.++...+.+++++. +++++++++++++.+. ..|+++ .+..+.+ .++.+.|+. ..+|++.|||
T Consensus 13 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~g~~~gpL 88 (521)
T 3a1k_A 13 AAARHYGITLDKTARLEWPALIDGALGSYDVVDQ---LYADEATPPTTSRE-HAVPSASENPLSAWYVTTSIPPTSDGVL 88 (521)
T ss_dssp HHHHHTTCCCCTTHHHHHHHHHHHHTHHHHHHHH---HHHHHSCCCCCCCC-EECCCTTTCTTSCEEEEEEECCSSCCTT
T ss_pred HHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHh---hhcccccccCchhh-hhccccccchhhhhHHHHhhcCCCCCCC
Confidence 45667777778888888 8888888887776541 222333 3333333 344444441 1258889999
Q ss_pred cCcEEEEecCCCCCCccCCccccccccCCCCCCcHHHHHHHHHCCCeEEEecCcCccccCCCCCCCCCCCCCCCCCCCCC
Q 007242 205 DGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKI 284 (611)
Q Consensus 205 ~GVPi~vKD~~~v~g~~tt~Gs~~~~~~~~~~~da~~V~~Lr~aGAIi~GKtn~~E~~~~~~~~n~~~G~t~NP~n~~~~ 284 (611)
|||||+|||+|+++|++||+||..+.++ .+.+||++|+|||+||||++||||||||+|+.+|.|++||+|+||||++|+
T Consensus 89 ~GvPi~vKD~i~v~G~~Tt~Gs~~~~~~-~~~~DA~vV~rLr~AGAvilGKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~ 167 (521)
T 3a1k_A 89 TGRRVAIKDNVTVAGVPMMNGSRTVEGF-TPSRDATVVTRLLAAGATVAGKAVCEDLCFSGSSFTPASGPVRNPWDRQRE 167 (521)
T ss_dssp TTCEEEEETTBCCTTSCBCTTCTTTTTB-CCSSCCHHHHHHHHTTCEEEEEECCCGGGCCSSSSCCTTCCCEETTEEEEE
T ss_pred CCCEEEEEcCcccCCcccCCCChhhcCC-CCCCchHHHHHHHHCCCEEEEeeChhhHhhCCCCCCCCCCCcCCCCCCCCC
Confidence 9999999999999999999999988665 457899999999999999999999999999999999999999999999999
Q ss_pred CCCCChhhHHHHHhCCccceeeccCCCcccccccccCcccccCCCCCcCCCCCCCCCCccccccccccCHHHHHHHHHHH
Q 007242 285 TGGSSSGSAAVVAAGLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAI 364 (611)
Q Consensus 285 ~GGSSgGsaaaVAag~~p~alGtD~gGSiRiPAa~~Gv~GlKPT~Grvs~~g~~~~~~~~~~~Gplarsv~Dla~~~~~i 364 (611)
|||||||||++||+|+|++|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||||||+|+++++++|
T Consensus 168 pGGSSgGSAAAVAag~~~~alGtDtgGSIR~PAa~cGvvGlKPT~Grvs~~G~~p~~~sld~~Gp~aRsv~D~a~~l~vl 247 (521)
T 3a1k_A 168 AGGSSGGSAALVANGDVDFAIGGDQGGSIRIPAAFCGVVGHKPTFGLVPYTGAFPIERTIDHLGPITRTVHDAALMLSVI 247 (521)
T ss_dssp CCSSSHHHHHHHHTTSSSEEEEEESSSTTHHHHHHHTSEEEECSTTTSCCTTBCCSCGGGCEEEEEESSHHHHHHHHHHH
T ss_pred CCCCCchHHHHHhcCCcceecccCCCCCCCcChHHcCCeeEecCCCcCCCCCCCCcccccCeeCceeCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCcC-CCCCCcccccc-cCCCCceEEEEeCCCcC--CCCHHHHHHHHHHHHHHHHHcCcEEEEeecCchHHH
Q 007242 365 NGPLPSQQPTVS-LPKVSFPLLKS-ATSISAIKLAKYDAWFN--DCSDDIRVCCSRAVDKLCERYGWKVVEVTIPNIEVM 440 (611)
Q Consensus 365 ~g~d~~~~~~~~-~p~~~~p~~~~-~~~~~~lrIGv~~~~~~--~~~p~V~~a~~~a~~~L~~~~G~eVvei~~p~l~~~ 440 (611)
+|+|+.|..+.. .|.. ++... ...++++|||++.+++. .++|+|+++++++++.|++ +||+|+++++|.+...
T Consensus 248 ag~d~~D~~~~~~~~~~--~~~~~l~~~~~~lrIgv~~~~~~~~~~~~~v~~a~~~a~~~L~~-~Ga~v~ev~~p~~~~~ 324 (521)
T 3a1k_A 248 AGRDGNDPRQADSVEAG--DYLSTLDSDVDGLRIGIVREGFGHAVSQPEVDDAVRAAAHSLTE-IGCTVEEVNIPWHLHA 324 (521)
T ss_dssp CSCCSSCTTSCTTCCCC--CSSTTTTSCCTTCEEEEEGGGSCCSSSCHHHHHHHHHHHHGGGG-GTCEEEEECCTHHHHH
T ss_pred hCCCCCCccccccCCCc--chhhhhccCccCcEEEEECccccccCCCHHHHHHHHHHHHHHHH-CCCEEEEeCCCchHhH
Confidence 999877643311 1211 11111 23468999999887653 4699999999999999996 8999999999976654
Q ss_pred HHHHHHHHHHHHHhh----------------------hhHHHhhccCCCCchhHHHHHHhh----cCCCHHHHHHHHHHH
Q 007242 441 RLAHYLTIGSECSTS----------------------LSSYLQKINCSDQGWDARVALSVY----GSFSSQEYIKAQKIR 494 (611)
Q Consensus 441 ~~a~~~~~~~E~~~~----------------------l~~~~~~~~~~~l~~~~r~~l~~~----~~~sa~dy~~a~~~r 494 (611)
...+......+...+ +..+.+. ....+.+.++.++..+ ..++..+|.++++.|
T Consensus 325 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~a~~~r 403 (521)
T 3a1k_A 325 FHIWNVIATDGGAYQMLDGNGYGMNAEGLYDPELMAHFASRRIQ-HADALSETVKLVALTGHHGITTLGGASYGKARNLV 403 (521)
T ss_dssp HHHHHHHHHHHHHHHTTTTTTTCSSSCSCCCHHHHHHHHHHHHH-SGGGSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhccccccchhhhhhHHHHHHHHHHhhh-hhhhcCHHHHHHHHhchhhhccCCHHHHHHHHHHH
Confidence 333333332332221 1111111 2345677776655443 356778999999999
Q ss_pred HHHHHHHHhHhcCCCEEEeeCCCCCcccccchhhccCcchhhhcccccccchhhhhhCCCceecccccCCCCCceEEEEE
Q 007242 495 NHQMQIHRNVFAKADVIVVPTTGVTAYEIKDDALKTGELDYIYGAALVRYQIAGNFLGLPAVTVPVGYDTAGLPIGLQFI 574 (611)
Q Consensus 495 ~~~~~~~~~lf~~~DvIltPttp~~ap~i~~~~~~~g~~~~~~~~~~~~yt~~~Nl~G~PAisvPvG~~~~GlPvGvQiv 574 (611)
+++++.+.++|+++|+||+||+|.++|+++....... ........++.||.++|++|+|+||||+|+ .+|||+|||||
T Consensus 404 ~~~~~~~~~~~~~~Dvll~Pt~p~~a~~~~~~~~~~~-~~~~~~~~~~~~t~~~nl~G~PaisvP~g~-~~GlPvGlQlv 481 (521)
T 3a1k_A 404 PLARAAYDTALRQFDVLVMPTLPYVASELPAKDVDRA-TFITKALGMIANTAPFDVTGHPSLSVPAGL-VNGLPVGMMIT 481 (521)
T ss_dssp HHHHHHHHHHHHHCSEEEEESCSSCCCBCCCTTCCHH-HHHHHHHTTCTTTHHHHHHCCCEEEEEEEE-ETTEEEEEEEE
T ss_pred HHHHHHHHHHhcCCCEEEECCCCCCCcccccccCchh-hHHHHHHhhhcccccchhcCCCcEEeeccc-CCCCCeeEEEE
Confidence 9999999999999999999999999999865211000 011112234678999999999999999999 68999999999
Q ss_pred eCCCChHHHHHHHHHHHH-hcc
Q 007242 575 GKPWSEPTLMHIAFAMQA-LCI 595 (611)
Q Consensus 575 G~~~~E~~LL~~A~~lE~-~~~ 595 (611)
|++|+|++||++|+++|+ ...
T Consensus 482 g~~~~d~~LL~~A~~~E~~~~~ 503 (521)
T 3a1k_A 482 GRHFDDATVLRVGRAFEKLRGA 503 (521)
T ss_dssp CSTTCHHHHHHHHHHHHHHHCC
T ss_pred cCCCCHHHHHHHHHHHHHhhcc
Confidence 999999999999999999 543
No 11
>3shg_B VBHA; ampylation, adenylylation, toxin-antitoxin complex, FIC fold transfer, transferase-protein binding complex; HET: TLA; 1.50A {Bartonella schoenbuchensis R1}
Probab=36.79 E-value=42 Score=24.93 Aligned_cols=27 Identities=7% Similarity=0.229 Sum_probs=24.3
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHh
Q 007242 139 LDYSKAYSSGDITPRMVAERFIAAVRE 165 (611)
Q Consensus 139 ~~~~~~~~sg~lT~~ev~~a~l~~i~~ 165 (611)
.+..+.+-.|++|+.++++.+.+||.+
T Consensus 33 l~~~erwv~GEis~~e~i~~~~~r~~~ 59 (61)
T 3shg_B 33 VAQMERVVVGELETSDVIKDLMERIKR 59 (61)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHc
Confidence 477888999999999999999999985
Done!