Query 007244
Match_columns 611
No_of_seqs 393 out of 3383
Neff 6.2
Searched_HMMs 46136
Date Thu Mar 28 20:55:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007244.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007244hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02904 Macro_H2A_like Macro d 99.9 2.3E-27 5.1E-32 231.0 12.9 115 340-478 15-139 (186)
2 cd02905 Macro_GDAP2_like Macro 99.9 3.8E-27 8.2E-32 220.6 13.4 113 344-478 2-119 (140)
3 PRK04143 hypothetical protein; 99.9 4.9E-25 1.1E-29 225.3 13.5 118 341-478 81-212 (264)
4 cd02906 Macro_1 Macro domain, 99.9 8E-25 1.7E-29 206.6 12.3 116 344-478 1-129 (147)
5 cd02908 Macro_Appr_pase_like M 99.9 4.8E-24 1E-28 204.9 12.6 112 344-478 1-117 (165)
6 cd02907 Macro_Af1521_BAL_like 99.9 1.1E-23 2.4E-28 204.2 13.6 116 342-478 1-124 (175)
7 PRK00431 RNase III inhibitor; 99.9 1.7E-23 3.6E-28 203.3 12.9 116 341-478 1-124 (177)
8 cd02903 Macro_BAL_like Macro d 99.9 5.8E-23 1.3E-27 191.7 13.0 110 343-478 1-117 (137)
9 COG2110 Predicted phosphatase 99.9 9.2E-22 2E-26 190.2 11.9 115 342-478 2-126 (179)
10 cd03330 Macro_2 Macro domain, 99.9 3E-21 6.6E-26 178.9 12.9 109 345-478 2-115 (133)
11 TIGR01663 PNK-3'Pase polynucle 99.8 1.9E-18 4.2E-23 192.4 16.5 141 16-164 365-506 (526)
12 COG4639 Predicted kinase [Gene 99.8 4.2E-18 9.2E-23 159.6 12.1 138 19-167 1-152 (168)
13 smart00506 A1pp Appr-1"-p proc 99.7 1.1E-17 2.4E-22 153.7 13.2 112 345-478 2-120 (133)
14 cd02749 Macro Macro domain, a 99.7 1.5E-17 3.2E-22 155.7 12.8 113 345-478 2-123 (147)
15 PF13671 AAA_33: AAA domain; P 99.7 2E-17 4.3E-22 153.0 11.4 127 22-151 1-143 (143)
16 cd02900 Macro_Appr_pase Macro 99.7 1.4E-16 3.1E-21 155.7 11.5 128 343-479 19-166 (186)
17 PF01661 Macro: Macro domain; 99.6 2.9E-16 6.2E-21 141.1 7.7 97 367-478 1-105 (118)
18 PRK06762 hypothetical protein; 99.6 5.8E-15 1.3E-19 140.8 16.4 147 19-174 1-156 (166)
19 PHA02530 pseT polynucleotide k 99.6 6.8E-15 1.5E-19 153.4 14.0 126 19-151 1-143 (300)
20 KOG2633 Hismacro and SEC14 dom 99.6 2.1E-15 4.6E-20 147.0 8.2 106 342-476 32-142 (200)
21 COG4088 Predicted nucleotide k 99.6 1.2E-14 2.6E-19 142.1 11.9 132 22-161 3-151 (261)
22 TIGR03574 selen_PSTK L-seryl-t 99.6 2.8E-14 6.1E-19 145.5 15.0 130 22-158 1-142 (249)
23 PRK13341 recombination factor 99.6 2.8E-16 6E-21 181.5 -0.2 121 340-477 472-654 (725)
24 PF08433 KTI12: Chromatin asso 99.5 5.1E-14 1.1E-18 145.7 11.7 133 22-159 3-148 (270)
25 COG0194 Gmk Guanylate kinase [ 99.5 7.5E-14 1.6E-18 135.2 11.0 142 19-177 3-177 (191)
26 cd02021 GntK Gluconate kinase 99.5 5E-13 1.1E-17 125.3 15.2 126 22-156 1-143 (150)
27 TIGR01313 therm_gnt_kin carboh 99.5 4.4E-13 9.6E-18 127.5 14.3 140 23-175 1-156 (163)
28 KOG3354 Gluconate kinase [Carb 99.5 1.6E-12 3.4E-17 122.0 15.1 133 16-156 8-163 (191)
29 cd00227 CPT Chloramphenicol (C 99.4 5.7E-12 1.2E-16 121.8 16.0 106 20-127 2-133 (175)
30 COG3265 GntK Gluconate kinase 99.4 3.3E-12 7.1E-17 119.3 13.1 135 26-174 1-151 (161)
31 TIGR01359 UMP_CMP_kin_fam UMP- 99.4 7.1E-12 1.5E-16 121.2 15.1 105 22-128 1-127 (183)
32 PRK14527 adenylate kinase; Pro 99.4 5.8E-12 1.2E-16 123.4 14.0 154 18-175 4-185 (191)
33 cd02901 Macro_Poa1p_like Macro 99.4 3.2E-12 6.9E-17 119.3 11.1 110 345-478 2-120 (140)
34 KOG3079 Uridylate kinase/adeny 99.3 2.7E-11 5.7E-16 117.0 15.9 155 16-176 4-187 (195)
35 PRK14531 adenylate kinase; Pro 99.3 1.2E-11 2.6E-16 120.5 13.8 149 20-175 2-177 (183)
36 PRK14532 adenylate kinase; Pro 99.3 2E-11 4.4E-16 118.9 15.3 148 23-174 3-179 (188)
37 COG0645 Predicted kinase [Gene 99.3 2.9E-11 6.2E-16 115.7 14.9 128 20-153 1-148 (170)
38 KOG2134 Polynucleotide kinase 99.3 1.4E-15 3.1E-20 159.6 -15.9 416 84-557 3-421 (422)
39 cd02904 Macro_H2A_like Macro d 99.3 1.7E-12 3.8E-17 127.0 4.8 109 194-311 54-163 (186)
40 PRK14737 gmk guanylate kinase; 99.3 2.5E-11 5.5E-16 119.1 11.6 135 18-165 2-170 (186)
41 PRK04143 hypothetical protein; 99.2 3.5E-12 7.7E-17 131.1 4.3 128 187-323 116-249 (264)
42 cd01428 ADK Adenylate kinase ( 99.2 7.5E-11 1.6E-15 114.7 13.2 104 23-128 2-128 (194)
43 TIGR03575 selen_PSTK_euk L-ser 99.2 7.3E-11 1.6E-15 125.7 14.1 80 73-159 122-203 (340)
44 TIGR01351 adk adenylate kinase 99.2 1.1E-10 2.4E-15 116.1 14.5 101 23-127 2-126 (210)
45 PRK00279 adk adenylate kinase; 99.2 1.9E-10 4E-15 114.9 14.7 104 22-127 2-129 (215)
46 PLN02674 adenylate kinase 99.2 1.7E-10 3.6E-15 117.8 14.5 107 20-128 31-161 (244)
47 PRK09825 idnK D-gluconate kina 99.2 3.7E-10 7.9E-15 109.9 15.8 136 20-169 3-155 (176)
48 PF06414 Zeta_toxin: Zeta toxi 99.2 6.5E-11 1.4E-15 116.9 10.6 113 16-128 11-144 (199)
49 PRK14530 adenylate kinase; Pro 99.2 4.2E-10 9.2E-15 112.4 15.5 102 22-128 5-129 (215)
50 TIGR01360 aden_kin_iso1 adenyl 99.2 5.6E-10 1.2E-14 107.9 15.8 124 20-148 3-149 (188)
51 PLN02200 adenylate kinase fami 99.2 3.5E-10 7.6E-15 114.9 15.0 106 18-127 41-168 (234)
52 PRK11545 gntK gluconate kinase 99.2 3.6E-10 7.8E-15 108.5 13.9 135 26-173 1-151 (163)
53 PRK14528 adenylate kinase; Pro 99.2 4.8E-10 1E-14 109.9 14.5 149 22-173 3-179 (186)
54 PRK10078 ribose 1,5-bisphospho 99.2 6.2E-10 1.3E-14 108.7 15.1 140 19-176 1-170 (186)
55 PRK13808 adenylate kinase; Pro 99.2 5.3E-10 1.1E-14 118.6 15.3 151 23-175 3-186 (333)
56 PRK14529 adenylate kinase; Pro 99.1 3.9E-10 8.4E-15 113.8 13.3 104 23-128 3-129 (223)
57 PRK02496 adk adenylate kinase; 99.1 8.2E-10 1.8E-14 107.3 14.2 146 22-175 3-177 (184)
58 cd02027 APSK Adenosine 5'-phos 99.1 3.9E-10 8.4E-15 106.6 11.5 101 22-124 1-116 (149)
59 PRK06217 hypothetical protein; 99.1 8.9E-10 1.9E-14 107.3 13.7 97 22-127 3-106 (183)
60 smart00072 GuKc Guanylate kina 99.1 5.8E-10 1.3E-14 108.8 11.7 132 20-165 2-168 (184)
61 PLN02459 probable adenylate ki 99.1 1.7E-09 3.6E-14 111.3 15.5 103 21-128 30-156 (261)
62 cd02905 Macro_GDAP2_like Macro 99.1 3.8E-11 8.2E-16 112.7 3.0 105 194-308 35-140 (140)
63 PF01583 APS_kinase: Adenylyls 99.1 1.2E-09 2.5E-14 104.4 12.2 103 19-123 1-118 (156)
64 PRK14738 gmk guanylate kinase; 99.1 1.5E-09 3.2E-14 108.1 12.8 146 16-175 9-187 (206)
65 PRK14526 adenylate kinase; Pro 99.0 3.5E-09 7.6E-14 106.1 15.0 101 23-129 3-126 (211)
66 PRK08118 topology modulation p 99.0 1.1E-09 2.4E-14 105.7 11.0 96 22-127 3-101 (167)
67 COG0563 Adk Adenylate kinase a 99.0 4.9E-09 1.1E-13 102.4 15.2 146 22-176 2-173 (178)
68 COG0703 AroK Shikimate kinase 99.0 1.9E-09 4E-14 104.2 12.0 124 22-155 4-143 (172)
69 PTZ00088 adenylate kinase 1; P 99.0 4.9E-09 1.1E-13 106.3 15.3 104 20-128 6-133 (229)
70 PRK13946 shikimate kinase; Pro 99.0 4E-09 8.6E-14 103.0 13.2 144 19-174 9-168 (184)
71 TIGR00455 apsK adenylylsulfate 99.0 4.9E-09 1.1E-13 102.0 13.2 106 16-123 14-134 (184)
72 TIGR03263 guanyl_kin guanylate 99.0 3.1E-09 6.8E-14 102.4 11.4 132 21-165 2-166 (180)
73 PRK07261 topology modulation p 99.0 2.7E-09 5.8E-14 103.2 10.4 98 22-128 2-102 (171)
74 PF08303 tRNA_lig_kinase: tRNA 99.0 1.1E-08 2.3E-13 97.9 14.1 139 22-164 1-166 (168)
75 PF00406 ADK: Adenylate kinase 99.0 8.5E-09 1.8E-13 97.1 13.1 98 25-124 1-122 (151)
76 PRK05541 adenylylsulfate kinas 98.9 4.8E-09 1E-13 101.2 10.9 105 17-124 4-121 (176)
77 PRK13948 shikimate kinase; Pro 98.9 1E-08 2.2E-13 100.5 13.2 121 17-148 7-144 (182)
78 cd02908 Macro_Appr_pase_like M 98.9 6.7E-10 1.4E-14 107.0 4.8 109 194-312 34-142 (165)
79 PRK00131 aroK shikimate kinase 98.9 5.9E-09 1.3E-13 99.2 11.1 146 18-174 2-163 (175)
80 PRK00300 gmk guanylate kinase; 98.9 7.9E-09 1.7E-13 101.8 12.3 144 18-177 3-179 (205)
81 PLN02772 guanylate kinase 98.9 5.8E-09 1.3E-13 112.5 12.1 153 19-192 134-324 (398)
82 PRK03846 adenylylsulfate kinas 98.9 1.4E-08 3.1E-13 100.1 14.0 105 15-121 19-138 (198)
83 COG0529 CysC Adenylylsulfate k 98.9 1E-08 2.2E-13 98.9 11.8 106 16-123 19-139 (197)
84 PRK13947 shikimate kinase; Pro 98.9 8.3E-09 1.8E-13 98.7 11.2 99 22-128 3-117 (171)
85 TIGR02322 phosphon_PhnN phosph 98.9 1.3E-08 2.8E-13 98.2 12.5 139 21-175 2-171 (179)
86 PRK06547 hypothetical protein; 98.9 1.3E-08 2.8E-13 98.9 11.2 106 17-128 12-141 (172)
87 PF00625 Guanylate_kin: Guanyl 98.9 1.1E-08 2.3E-13 99.7 10.6 140 19-175 1-175 (183)
88 PRK05057 aroK shikimate kinase 98.9 2.5E-08 5.4E-13 96.6 13.0 144 20-174 4-163 (172)
89 PRK01184 hypothetical protein; 98.9 4.2E-08 9.1E-13 95.2 14.5 101 21-127 2-126 (184)
90 PF01591 6PF2K: 6-phosphofruct 98.9 2E-08 4.4E-13 101.2 12.6 132 16-147 8-167 (222)
91 PRK05537 bifunctional sulfate 98.9 2.2E-08 4.8E-13 113.9 14.3 107 16-123 388-510 (568)
92 PF07931 CPT: Chloramphenicol 98.9 1.8E-08 3.8E-13 98.1 11.5 108 21-129 2-134 (174)
93 PRK03839 putative kinase; Prov 98.9 1.2E-08 2.5E-13 98.9 10.3 91 22-127 2-102 (180)
94 KOG3062 RNA polymerase II elon 98.9 8E-09 1.7E-13 102.6 9.0 136 22-160 3-154 (281)
95 PRK08356 hypothetical protein; 98.8 8.3E-08 1.8E-12 94.5 16.0 98 21-127 6-137 (195)
96 cd02906 Macro_1 Macro domain, 98.8 1.2E-09 2.6E-14 103.5 2.6 104 195-305 40-147 (147)
97 KOG2134 Polynucleotide kinase 98.8 4.9E-09 1.1E-13 110.9 6.9 144 15-166 264-408 (422)
98 PRK05506 bifunctional sulfate 98.8 3.9E-08 8.6E-13 113.4 15.0 105 16-122 456-575 (632)
99 PRK00889 adenylylsulfate kinas 98.8 2.6E-08 5.7E-13 96.0 11.5 102 18-122 2-117 (175)
100 PRK00625 shikimate kinase; Pro 98.8 2.7E-08 5.9E-13 96.7 11.2 99 22-128 2-119 (173)
101 PLN02842 nucleotide kinase 98.8 8.1E-08 1.8E-12 106.9 15.5 100 24-127 1-123 (505)
102 PRK13949 shikimate kinase; Pro 98.8 3.8E-08 8.3E-13 95.1 11.1 95 23-125 4-114 (169)
103 PRK06696 uridine kinase; Valid 98.8 5.5E-08 1.2E-12 97.8 12.6 103 17-127 19-169 (223)
104 cd02907 Macro_Af1521_BAL_like 98.8 7.1E-09 1.5E-13 100.7 5.6 112 194-312 36-149 (175)
105 PRK05480 uridine/cytidine kina 98.8 1.5E-07 3.2E-12 93.4 15.1 119 18-148 4-166 (209)
106 cd02903 Macro_BAL_like Macro d 98.8 3E-09 6.4E-14 99.5 2.7 100 196-307 38-137 (137)
107 cd00464 SK Shikimate kinase (S 98.8 9.1E-08 2E-12 89.4 12.2 98 23-128 2-115 (154)
108 PRK04040 adenylate kinase; Pro 98.7 1.3E-07 2.7E-12 93.2 13.5 148 19-176 1-183 (188)
109 COG1936 Predicted nucleotide k 98.7 4.7E-08 1E-12 94.1 9.8 138 22-177 2-151 (180)
110 PRK12339 2-phosphoglycerate ki 98.7 1.5E-07 3.1E-12 93.5 13.5 104 19-128 2-143 (197)
111 PRK00431 RNase III inhibitor; 98.7 1.1E-08 2.3E-13 99.7 5.2 119 194-319 37-157 (177)
112 KOG3347 Predicted nucleotide k 98.7 4.4E-08 9.5E-13 92.0 8.8 114 22-146 9-134 (176)
113 PRK00081 coaE dephospho-CoA ki 98.7 8.3E-08 1.8E-12 94.7 11.3 127 20-164 2-177 (194)
114 cd02020 CMPK Cytidine monophos 98.7 1E-07 2.3E-12 88.1 10.1 94 22-126 1-104 (147)
115 COG2110 Predicted phosphatase 98.7 9.3E-09 2E-13 100.1 2.9 80 231-310 70-149 (179)
116 PRK04182 cytidylate kinase; Pr 98.7 3.3E-07 7.1E-12 87.8 13.4 94 22-127 2-114 (180)
117 PRK13975 thymidylate kinase; P 98.6 4.3E-07 9.4E-12 88.7 13.8 107 19-126 1-135 (196)
118 TIGR02173 cyt_kin_arch cytidyl 98.6 2.6E-07 5.7E-12 87.9 11.9 95 22-127 2-114 (171)
119 COG1102 Cmk Cytidylate kinase 98.6 2.9E-07 6.4E-12 87.7 11.8 95 22-127 2-113 (179)
120 PF13207 AAA_17: AAA domain; P 98.6 9.3E-08 2E-12 86.0 8.2 94 22-126 1-111 (121)
121 PRK14021 bifunctional shikimat 98.6 2.8E-07 6E-12 104.6 13.4 147 18-173 4-167 (542)
122 PTZ00301 uridine kinase; Provi 98.6 6.3E-07 1.4E-11 89.8 14.2 116 19-146 2-165 (210)
123 PRK03731 aroL shikimate kinase 98.6 4.1E-07 8.8E-12 87.2 12.3 98 21-127 3-116 (171)
124 PRK08233 hypothetical protein; 98.6 2.5E-07 5.5E-12 88.9 10.6 98 20-127 3-120 (182)
125 PRK14730 coaE dephospho-CoA ki 98.6 2.9E-07 6.3E-12 91.1 10.8 111 21-148 2-162 (195)
126 TIGR00152 dephospho-CoA kinase 98.6 2.5E-07 5.3E-12 90.5 10.2 126 22-164 1-176 (188)
127 PHA02595 tk.4 hypothetical pro 98.6 3.2E-07 6.8E-12 87.7 10.5 115 344-478 2-124 (154)
128 COG0572 Udk Uridine kinase [Nu 98.6 7.6E-07 1.6E-11 89.2 13.5 117 18-146 6-166 (218)
129 cd01672 TMPK Thymidine monopho 98.6 1.3E-06 2.8E-11 84.6 14.7 150 22-174 2-192 (200)
130 cd02022 DPCK Dephospho-coenzym 98.6 2.2E-07 4.9E-12 90.3 9.4 125 22-164 1-174 (179)
131 PRK08154 anaerobic benzoate ca 98.6 5.4E-07 1.2E-11 95.3 12.5 152 15-174 128-293 (309)
132 PRK00698 tmk thymidylate kinas 98.6 1E-06 2.2E-11 86.4 13.6 153 20-175 3-195 (205)
133 PRK12338 hypothetical protein; 98.6 7.4E-07 1.6E-11 94.3 13.3 106 19-127 3-152 (319)
134 COG4185 Uncharacterized protei 98.5 2.3E-07 4.9E-12 88.2 8.2 126 19-147 1-136 (187)
135 COG3709 Uncharacterized compon 98.5 2.6E-06 5.7E-11 81.2 15.2 141 19-176 4-176 (192)
136 PRK13973 thymidylate kinase; P 98.5 2.7E-06 5.9E-11 85.1 15.5 108 20-127 3-151 (213)
137 PRK14732 coaE dephospho-CoA ki 98.5 5.3E-07 1.2E-11 89.4 10.0 125 22-164 1-174 (196)
138 TIGR00235 udk uridine kinase. 98.5 1.7E-06 3.7E-11 85.9 13.6 40 17-56 3-43 (207)
139 PRK14731 coaE dephospho-CoA ki 98.5 1E-06 2.3E-11 87.9 12.1 129 18-164 3-186 (208)
140 PRK07667 uridine kinase; Provi 98.5 1.3E-06 2.7E-11 86.2 11.8 103 17-127 14-161 (193)
141 PRK05416 glmZ(sRNA)-inactivati 98.5 2.6E-06 5.7E-11 89.3 14.7 100 18-129 4-111 (288)
142 KOG4622 Predicted nucleotide k 98.5 1.9E-07 4.2E-12 91.0 5.5 132 21-157 2-169 (291)
143 cd02024 NRK1 Nicotinamide ribo 98.4 1.1E-06 2.4E-11 86.6 9.8 35 22-57 1-35 (187)
144 KOG2633 Hismacro and SEC14 dom 98.4 1.1E-07 2.4E-12 93.3 2.5 85 231-317 88-174 (200)
145 TIGR00041 DTMP_kinase thymidyl 98.4 3.9E-06 8.5E-11 81.9 13.4 108 20-127 3-150 (195)
146 PRK14733 coaE dephospho-CoA ki 98.4 1.8E-06 3.9E-11 86.2 11.0 131 18-165 4-182 (204)
147 PLN02199 shikimate kinase 98.4 9.2E-06 2E-10 85.1 16.4 96 20-124 102-214 (303)
148 PTZ00451 dephospho-CoA kinase; 98.4 2.1E-06 4.4E-11 88.0 10.9 127 21-164 2-189 (244)
149 PLN02422 dephospho-CoA kinase 98.4 2.7E-06 5.9E-11 86.5 11.5 125 22-164 3-178 (232)
150 PRK04220 2-phosphoglycerate ki 98.4 5.6E-06 1.2E-10 87.0 13.8 110 16-129 88-239 (301)
151 KOG0635 Adenosine 5'-phosphosu 98.4 2.2E-06 4.8E-11 80.8 9.5 105 16-122 27-146 (207)
152 PF00485 PRK: Phosphoribulokin 98.3 4.2E-06 9E-11 82.3 11.7 112 22-145 1-164 (194)
153 cd01673 dNK Deoxyribonucleosid 98.3 3.7E-06 7.9E-11 82.2 10.9 104 22-127 1-147 (193)
154 cd02023 UMPK Uridine monophosp 98.3 7.8E-06 1.7E-10 80.3 13.0 36 22-57 1-37 (198)
155 PLN02348 phosphoribulokinase 98.3 5.3E-06 1.1E-10 89.9 12.7 121 16-147 45-222 (395)
156 PF01202 SKI: Shikimate kinase 98.3 1.3E-06 2.7E-11 83.4 6.6 135 29-174 1-151 (158)
157 cd02028 UMPK_like Uridine mono 98.3 4.7E-06 1E-10 81.3 10.7 110 22-143 1-154 (179)
158 PRK14734 coaE dephospho-CoA ki 98.3 8.1E-06 1.7E-10 81.1 12.1 33 21-56 2-34 (200)
159 cd02030 NDUO42 NADH:Ubiquinone 98.3 1.2E-05 2.6E-10 80.8 13.3 152 22-177 1-216 (219)
160 PRK12337 2-phosphoglycerate ki 98.3 5.7E-06 1.2E-10 91.2 11.8 107 18-128 253-407 (475)
161 KOG0707 Guanylate kinase [Nucl 98.2 1E-05 2.3E-10 81.3 12.0 136 16-164 32-205 (231)
162 PF13238 AAA_18: AAA domain; P 98.2 8.8E-07 1.9E-11 79.6 4.0 97 23-128 1-115 (129)
163 PTZ00322 6-phosphofructo-2-kin 98.2 1E-05 2.2E-10 94.1 13.4 126 20-148 215-366 (664)
164 PRK07429 phosphoribulokinase; 98.2 2.2E-05 4.8E-10 83.8 13.9 121 16-147 4-164 (327)
165 PLN02924 thymidylate kinase 98.2 2.9E-05 6.2E-10 78.5 14.0 108 16-123 12-154 (220)
166 PF01121 CoaE: Dephospho-CoA k 98.1 4.1E-06 8.8E-11 82.1 6.2 125 22-164 2-175 (180)
167 PRK13951 bifunctional shikimat 98.1 1.7E-05 3.6E-10 89.1 11.5 96 22-126 2-113 (488)
168 cd03330 Macro_2 Macro domain, 98.1 1E-06 2.2E-11 81.7 0.8 72 231-304 61-132 (133)
169 PRK09270 nucleoside triphospha 98.0 3.5E-05 7.6E-10 77.9 11.4 122 16-146 29-198 (229)
170 COG1428 Deoxynucleoside kinase 98.0 8.1E-05 1.7E-09 74.2 13.4 157 20-177 4-207 (216)
171 TIGR00017 cmk cytidylate kinas 98.0 6.7E-05 1.5E-09 75.6 12.9 34 19-54 1-34 (217)
172 PRK13477 bifunctional pantoate 98.0 0.00011 2.4E-09 82.6 15.2 37 19-57 283-319 (512)
173 cd00071 GMPK Guanosine monopho 98.0 1.5E-05 3.3E-10 74.4 7.1 87 22-114 1-120 (137)
174 PRK13974 thymidylate kinase; P 98.0 0.0001 2.2E-09 73.8 13.1 108 20-127 3-157 (212)
175 PRK15453 phosphoribulokinase; 98.0 8.7E-05 1.9E-09 77.4 12.8 40 18-57 3-45 (290)
176 PRK06761 hypothetical protein; 98.0 3.2E-05 6.9E-10 80.9 9.7 108 20-128 3-130 (282)
177 PRK05439 pantothenate kinase; 98.0 3E-05 6.5E-10 82.1 9.6 42 16-57 82-128 (311)
178 KOG3078 Adenylate kinase [Nucl 98.0 2.6E-05 5.6E-10 79.0 8.4 106 19-129 14-142 (235)
179 PRK07933 thymidylate kinase; V 97.9 0.00018 4E-09 72.2 14.1 106 22-127 2-155 (213)
180 PLN02318 phosphoribulokinase/u 97.9 7.7E-05 1.7E-09 84.5 12.3 40 17-57 62-101 (656)
181 cd02025 PanK Pantothenate kina 97.9 4.2E-05 9.2E-10 77.1 9.1 36 22-57 1-41 (220)
182 PF03668 ATP_bind_2: P-loop AT 97.9 0.00012 2.7E-09 76.2 12.5 100 21-132 2-110 (284)
183 PF02223 Thymidylate_kin: Thym 97.9 9.7E-05 2.1E-09 71.8 10.8 147 25-175 1-185 (186)
184 COG0125 Tmk Thymidylate kinase 97.9 0.00025 5.5E-09 71.1 13.8 110 19-128 2-151 (208)
185 PRK13341 recombination factor 97.9 2.3E-06 5E-11 99.9 -1.0 80 232-313 592-681 (725)
186 PRK03333 coaE dephospho-CoA ki 97.8 8.1E-05 1.8E-09 81.5 10.8 32 22-56 3-34 (395)
187 COG0237 CoaE Dephospho-CoA kin 97.8 5.7E-05 1.2E-09 75.3 8.8 35 19-56 1-35 (201)
188 cd02900 Macro_Appr_pase Macro 97.8 7.1E-06 1.5E-10 80.7 2.3 72 237-308 113-186 (186)
189 cd02026 PRK Phosphoribulokinas 97.8 0.00013 2.9E-09 76.0 11.7 115 22-147 1-155 (273)
190 TIGR00554 panK_bact pantothena 97.8 7.3E-05 1.6E-09 78.6 9.6 40 17-56 59-103 (290)
191 PLN02165 adenylate isopentenyl 97.8 0.00017 3.7E-09 76.9 11.6 110 16-127 39-197 (334)
192 PF00004 AAA: ATPase family as 97.8 7E-05 1.5E-09 67.5 7.5 63 23-85 1-66 (132)
193 cd02019 NK Nucleoside/nucleoti 97.8 7.8E-05 1.7E-09 61.3 6.9 61 22-113 1-63 (69)
194 PF01661 Macro: Macro domain; 97.7 6.4E-06 1.4E-10 73.7 -0.0 70 231-300 48-118 (118)
195 cd02029 PRK_like Phosphoribulo 97.7 0.00031 6.8E-09 72.8 12.2 37 22-58 1-40 (277)
196 PHA00729 NTP-binding motif con 97.7 0.0002 4.3E-09 72.5 10.0 105 20-127 17-141 (226)
197 COG2074 2-phosphoglycerate kin 97.7 0.00016 3.4E-09 73.8 9.1 108 15-127 84-232 (299)
198 KOG3877 NADH:ubiquinone oxidor 97.6 0.00056 1.2E-08 70.5 12.2 112 16-127 67-240 (393)
199 PRK00023 cmk cytidylate kinase 97.6 0.00088 1.9E-08 67.9 12.7 34 20-55 4-37 (225)
200 COG0283 Cmk Cytidylate kinase 97.6 0.0019 4.1E-08 64.8 14.3 31 21-53 5-35 (222)
201 PRK13976 thymidylate kinase; P 97.5 0.001 2.2E-08 66.7 12.4 105 22-126 2-146 (209)
202 COG2019 AdkA Archaeal adenylat 97.5 0.0011 2.3E-08 64.1 11.3 32 20-52 4-35 (189)
203 COG3896 Chloramphenicol 3-O-ph 97.5 0.00078 1.7E-08 64.4 10.0 114 16-130 19-165 (205)
204 KOG3308 Uncharacterized protei 97.4 0.00061 1.3E-08 67.4 8.2 37 20-57 4-40 (225)
205 COG1660 Predicted P-loop-conta 97.4 0.0024 5.2E-08 65.6 12.6 100 21-131 2-110 (286)
206 PRK00091 miaA tRNA delta(2)-is 97.3 0.0014 3E-08 69.5 11.2 37 18-56 2-38 (307)
207 PLN00020 ribulose bisphosphate 97.3 0.00068 1.5E-08 73.2 8.4 53 17-69 145-197 (413)
208 cd02749 Macro Macro domain, a 97.3 9.3E-05 2E-09 69.2 1.6 103 195-304 36-146 (147)
209 smart00382 AAA ATPases associa 97.3 0.00075 1.6E-08 59.7 7.2 36 20-55 2-40 (148)
210 PRK05800 cobU adenosylcobinami 97.3 0.00031 6.8E-09 68.2 4.7 32 22-53 3-34 (170)
211 PRK11860 bifunctional 3-phosph 97.2 0.007 1.5E-07 70.7 15.9 34 21-56 443-476 (661)
212 cd00009 AAA The AAA+ (ATPases 97.2 0.0018 3.9E-08 58.0 8.5 81 19-99 18-107 (151)
213 PF00448 SRP54: SRP54-type pro 97.2 0.0018 3.9E-08 64.3 9.1 39 20-58 1-42 (196)
214 PRK09087 hypothetical protein; 97.1 0.0028 6E-08 64.3 10.4 121 21-148 45-185 (226)
215 PF01745 IPT: Isopentenyl tran 97.1 0.0053 1.1E-07 61.7 12.0 127 21-153 2-165 (233)
216 KOG3220 Similar to bacterial d 97.1 0.0033 7.1E-08 62.4 10.3 110 21-148 2-162 (225)
217 PF05496 RuvB_N: Holliday junc 97.1 0.0012 2.7E-08 66.8 7.3 72 20-97 50-121 (233)
218 TIGR01425 SRP54_euk signal rec 97.1 0.0048 1E-07 68.2 12.4 41 17-57 97-140 (429)
219 smart00506 A1pp Appr-1"-p proc 97.1 0.00012 2.6E-09 67.0 -0.0 67 234-300 67-133 (133)
220 CHL00195 ycf46 Ycf46; Provisio 97.1 0.0012 2.7E-08 74.1 7.9 51 18-68 257-307 (489)
221 KOG4238 Bifunctional ATP sulfu 97.1 0.00091 2E-08 70.9 6.4 106 19-124 49-169 (627)
222 KOG0744 AAA+-type ATPase [Post 97.1 0.0022 4.8E-08 67.7 9.0 26 20-45 177-202 (423)
223 KOG0738 AAA+-type ATPase [Post 97.1 0.0044 9.6E-08 66.8 11.3 53 21-73 246-298 (491)
224 PRK09518 bifunctional cytidyla 97.1 0.0082 1.8E-07 70.7 14.8 33 22-56 3-35 (712)
225 COG1072 CoaA Panthothenate kin 97.0 0.0021 4.5E-08 66.7 8.3 109 16-128 78-234 (283)
226 KOG0739 AAA+-type ATPase [Post 97.0 0.0011 2.3E-08 69.2 6.0 65 16-80 161-226 (439)
227 PRK03992 proteasome-activating 97.0 0.0016 3.5E-08 71.2 7.2 45 18-62 163-207 (389)
228 PRK10867 signal recognition pa 97.0 0.0076 1.6E-07 66.9 12.5 41 17-57 97-141 (433)
229 PRK14974 cell division protein 97.0 0.0063 1.4E-07 65.4 11.5 41 17-57 137-180 (336)
230 PF13401 AAA_22: AAA domain; P 96.9 0.0046 9.9E-08 55.9 9.0 95 19-114 3-125 (131)
231 PHA02544 44 clamp loader, smal 96.9 0.0062 1.3E-07 64.1 11.2 105 16-126 39-152 (316)
232 cd03115 SRP The signal recogni 96.9 0.016 3.4E-07 55.6 13.0 35 22-56 2-39 (173)
233 TIGR00959 ffh signal recogniti 96.9 0.0077 1.7E-07 66.7 12.2 41 17-57 96-140 (428)
234 TIGR02881 spore_V_K stage V sp 96.9 0.0087 1.9E-07 61.7 11.7 27 18-44 40-66 (261)
235 KOG1384 tRNA delta(2)-isopente 96.9 0.0071 1.5E-07 64.0 11.0 107 19-127 6-160 (348)
236 TIGR00064 ftsY signal recognit 96.9 0.0096 2.1E-07 62.1 11.6 41 17-57 69-112 (272)
237 COG2256 MGS1 ATPase related to 96.8 0.0033 7.2E-08 68.1 8.2 80 21-103 49-131 (436)
238 PTZ00454 26S protease regulato 96.8 0.0025 5.4E-08 70.0 7.4 36 18-53 177-212 (398)
239 PRK06620 hypothetical protein; 96.8 0.0084 1.8E-07 60.3 10.6 25 21-45 45-69 (214)
240 PRK00771 signal recognition pa 96.8 0.0081 1.8E-07 66.7 11.4 40 18-57 93-135 (437)
241 KOG0733 Nuclear AAA ATPase (VC 96.8 0.0017 3.8E-08 73.2 6.0 53 19-71 544-596 (802)
242 PRK10416 signal recognition pa 96.8 0.015 3.2E-07 62.1 12.8 40 18-57 112-154 (318)
243 PF13173 AAA_14: AAA domain 96.8 0.005 1.1E-07 56.4 8.1 78 21-99 3-83 (128)
244 COG1618 Predicted nucleotide k 96.8 0.01 2.3E-07 57.1 10.2 27 19-45 4-30 (179)
245 PHA03132 thymidine kinase; Pro 96.8 0.019 4.2E-07 65.6 14.1 26 20-45 257-282 (580)
246 PRK08084 DNA replication initi 96.8 0.0075 1.6E-07 61.4 9.9 24 21-44 46-69 (235)
247 PTZ00361 26 proteosome regulat 96.8 0.0031 6.6E-08 70.1 7.6 39 18-56 215-253 (438)
248 KOG0733 Nuclear AAA ATPase (VC 96.8 0.0026 5.6E-08 71.8 6.9 69 17-85 220-290 (802)
249 KOG0234 Fructose-6-phosphate 2 96.8 0.018 4E-07 63.2 13.3 132 16-147 24-184 (438)
250 TIGR01242 26Sp45 26S proteasom 96.8 0.0026 5.6E-08 68.8 6.8 35 19-53 155-189 (364)
251 PLN02840 tRNA dimethylallyltra 96.8 0.0049 1.1E-07 67.9 8.9 40 14-55 15-54 (421)
252 PRK14956 DNA polymerase III su 96.7 0.0099 2.1E-07 66.6 11.0 111 16-126 36-172 (484)
253 CHL00181 cbbX CbbX; Provisiona 96.7 0.019 4.1E-07 60.4 12.4 67 19-87 58-132 (287)
254 PF07728 AAA_5: AAA domain (dy 96.6 0.002 4.4E-08 59.3 4.1 30 23-52 2-31 (139)
255 PRK12724 flagellar biosynthesi 96.6 0.02 4.2E-07 63.3 12.3 40 18-57 221-264 (432)
256 PRK12377 putative replication 96.6 0.0065 1.4E-07 62.6 8.0 104 20-123 101-215 (248)
257 KOG1969 DNA replication checkp 96.6 0.014 3E-07 67.4 11.2 37 16-52 322-358 (877)
258 PRK14961 DNA polymerase III su 96.6 0.014 3E-07 63.3 11.0 111 16-127 34-171 (363)
259 COG0464 SpoVK ATPases of the A 96.6 0.0048 1E-07 69.4 7.6 60 17-76 273-332 (494)
260 PRK14962 DNA polymerase III su 96.6 0.008 1.7E-07 67.5 9.3 30 16-45 32-61 (472)
261 PRK05201 hslU ATP-dependent pr 96.5 0.0043 9.4E-08 68.2 6.6 43 20-62 50-93 (443)
262 PRK13342 recombination factor 96.5 0.014 3.1E-07 64.3 10.5 77 20-99 36-115 (413)
263 TIGR01243 CDC48 AAA family ATP 96.5 0.0061 1.3E-07 72.0 8.1 51 18-68 485-535 (733)
264 PLN02748 tRNA dimethylallyltra 96.5 0.0056 1.2E-07 68.4 7.1 38 16-55 18-55 (468)
265 cd00544 CobU Adenosylcobinamid 96.5 0.0055 1.2E-07 59.5 6.2 31 22-52 1-31 (169)
266 COG5324 Uncharacterized conser 96.5 0.019 4.1E-07 63.2 10.7 144 18-165 372-530 (758)
267 TIGR02640 gas_vesic_GvpN gas v 96.4 0.0093 2E-07 61.7 8.1 31 22-52 23-53 (262)
268 TIGR00390 hslU ATP-dependent p 96.4 0.0058 1.3E-07 67.2 6.8 45 18-62 45-90 (441)
269 smart00763 AAA_PrkA PrkA AAA d 96.4 0.0032 6.9E-08 68.0 4.7 29 17-45 75-103 (361)
270 COG0541 Ffh Signal recognition 96.4 0.025 5.5E-07 62.0 11.5 41 17-57 97-140 (451)
271 KOG0780 Signal recognition par 96.4 0.018 4E-07 62.1 10.1 101 15-115 96-225 (483)
272 TIGR02880 cbbX_cfxQ probable R 96.4 0.011 2.3E-07 62.1 8.4 65 21-87 59-131 (284)
273 PHA02244 ATPase-like protein 96.4 0.0093 2E-07 64.7 8.0 69 23-93 122-196 (383)
274 PF14519 Macro_2: Macro-like d 96.4 0.0085 1.9E-07 62.1 7.4 156 314-478 14-193 (280)
275 PRK08116 hypothetical protein; 96.3 0.011 2.4E-07 61.5 8.0 104 20-123 114-230 (268)
276 cd01131 PilT Pilus retraction 96.3 0.035 7.6E-07 55.0 11.2 102 22-124 3-120 (198)
277 cd01130 VirB11-like_ATPase Typ 96.3 0.045 9.9E-07 53.5 11.8 108 18-127 23-149 (186)
278 KOG2702 Predicted panthothenat 96.3 0.0073 1.6E-07 61.1 5.9 110 16-130 115-284 (323)
279 PRK14957 DNA polymerase III su 96.3 0.037 8.1E-07 63.2 12.3 112 16-127 34-171 (546)
280 KOG0730 AAA+-type ATPase [Post 96.3 0.0077 1.7E-07 68.7 6.7 54 18-71 466-519 (693)
281 PRK14722 flhF flagellar biosyn 96.3 0.029 6.2E-07 61.2 10.9 40 18-57 135-179 (374)
282 COG1222 RPT1 ATP-dependent 26S 96.3 0.0062 1.4E-07 65.2 5.6 39 17-55 182-220 (406)
283 TIGR01241 FtsH_fam ATP-depende 96.3 0.0058 1.3E-07 68.9 5.8 39 18-56 86-124 (495)
284 PRK12323 DNA polymerase III su 96.3 0.03 6.6E-07 64.7 11.5 112 16-127 34-176 (700)
285 PRK00080 ruvB Holliday junctio 96.2 0.012 2.5E-07 62.8 7.8 64 18-87 49-112 (328)
286 TIGR03499 FlhF flagellar biosy 96.2 0.013 2.7E-07 61.5 7.7 40 18-57 192-236 (282)
287 TIGR01243 CDC48 AAA family ATP 96.2 0.01 2.2E-07 70.1 7.7 68 18-85 210-279 (733)
288 cd03331 Macro_Poa1p_like_SNF2 96.2 0.054 1.2E-06 51.8 11.1 123 345-478 2-132 (152)
289 PRK04296 thymidine kinase; Pro 96.2 0.043 9.2E-07 54.0 10.7 92 19-112 1-115 (190)
290 PLN03025 replication factor C 96.2 0.026 5.6E-07 60.0 9.8 27 17-44 32-58 (319)
291 TIGR03420 DnaA_homol_Hda DnaA 96.2 0.032 7E-07 55.5 10.0 39 17-55 35-76 (226)
292 PRK06893 DNA replication initi 96.2 0.023 4.9E-07 57.6 8.9 24 21-44 40-63 (229)
293 TIGR03689 pup_AAA proteasome A 96.1 0.011 2.4E-07 66.8 7.2 29 18-46 214-242 (512)
294 COG1126 GlnQ ABC-type polar am 96.1 0.0038 8.3E-08 62.7 3.1 26 17-42 25-50 (240)
295 PRK12726 flagellar biosynthesi 96.1 0.037 8E-07 60.4 10.9 41 18-58 204-247 (407)
296 PRK14952 DNA polymerase III su 96.1 0.06 1.3E-06 62.0 13.0 112 16-127 31-170 (584)
297 PRK14955 DNA polymerase III su 96.1 0.035 7.6E-07 60.9 10.7 30 16-45 34-63 (397)
298 TIGR00635 ruvB Holliday juncti 96.1 0.013 2.8E-07 61.4 7.0 64 18-87 28-91 (305)
299 COG0466 Lon ATP-dependent Lon 96.1 0.011 2.4E-07 68.1 6.9 41 17-57 347-387 (782)
300 PRK14958 DNA polymerase III su 96.1 0.032 7E-07 63.2 10.6 110 16-126 34-170 (509)
301 cd02901 Macro_Poa1p_like Macro 96.1 0.0027 5.8E-08 59.2 1.5 41 265-305 98-138 (140)
302 PRK04195 replication factor C 96.1 0.033 7.2E-07 62.7 10.5 34 20-53 39-72 (482)
303 PRK08727 hypothetical protein; 96.1 0.06 1.3E-06 54.7 11.4 23 21-43 42-64 (233)
304 PRK05642 DNA replication initi 96.0 0.031 6.7E-07 56.9 9.4 36 21-56 46-84 (234)
305 TIGR03707 PPK2_P_aer polyphosp 96.0 0.072 1.6E-06 54.3 11.9 111 17-129 28-160 (230)
306 COG1419 FlhF Flagellar GTP-bin 96.0 0.036 7.8E-07 60.6 10.2 81 19-99 202-303 (407)
307 CHL00176 ftsH cell division pr 96.0 0.011 2.4E-07 68.7 6.7 39 18-56 214-252 (638)
308 KOG1533 Predicted GTPase [Gene 96.0 0.0049 1.1E-07 62.5 3.2 36 22-57 4-42 (290)
309 PRK11889 flhF flagellar biosyn 96.0 0.033 7.1E-07 61.1 9.8 40 18-57 239-281 (436)
310 PRK14949 DNA polymerase III su 96.0 0.041 9E-07 65.6 11.3 31 16-46 34-64 (944)
311 COG1223 Predicted ATPase (AAA+ 96.0 0.06 1.3E-06 55.7 10.9 41 16-56 147-187 (368)
312 PRK12723 flagellar biosynthesi 96.0 0.018 4E-07 63.0 7.9 40 18-57 172-218 (388)
313 TIGR00174 miaA tRNA isopenteny 96.0 0.017 3.6E-07 60.8 7.3 33 22-56 1-33 (287)
314 PF03029 ATP_bind_1: Conserved 96.0 0.0059 1.3E-07 62.5 3.8 30 25-54 1-33 (238)
315 PF01695 IstB_IS21: IstB-like 96.0 0.0072 1.6E-07 59.0 4.1 105 18-125 45-161 (178)
316 PRK14960 DNA polymerase III su 96.0 0.055 1.2E-06 62.7 11.8 30 16-45 33-62 (702)
317 PRK07764 DNA polymerase III su 96.0 0.045 9.7E-07 65.4 11.4 112 16-127 33-172 (824)
318 PLN03046 D-glycerate 3-kinase; 95.9 0.0096 2.1E-07 65.5 5.3 41 17-57 209-252 (460)
319 PRK13900 type IV secretion sys 95.9 0.11 2.4E-06 55.9 13.3 105 19-125 159-282 (332)
320 PRK06645 DNA polymerase III su 95.9 0.06 1.3E-06 61.0 11.8 112 16-127 39-180 (507)
321 TIGR00150 HI0065_YjeE ATPase, 95.9 0.0076 1.6E-07 56.4 3.8 28 18-45 20-47 (133)
322 PRK09183 transposase/IS protei 95.9 0.034 7.4E-07 57.6 9.0 121 19-147 101-231 (259)
323 PRK14963 DNA polymerase III su 95.9 0.039 8.6E-07 62.5 10.2 30 16-45 32-61 (504)
324 PRK14964 DNA polymerase III su 95.9 0.057 1.2E-06 60.9 11.4 111 16-127 31-168 (491)
325 PLN02796 D-glycerate 3-kinase 95.9 0.01 2.2E-07 63.9 5.1 28 18-45 98-125 (347)
326 PRK07003 DNA polymerase III su 95.9 0.043 9.2E-07 64.4 10.5 111 16-126 34-170 (830)
327 PRK06921 hypothetical protein; 95.9 0.029 6.3E-07 58.4 8.4 101 19-120 116-231 (266)
328 KOG0735 AAA+-type ATPase [Post 95.9 0.046 9.9E-07 63.1 10.4 65 19-83 700-764 (952)
329 TIGR00362 DnaA chromosomal rep 95.9 0.09 1.9E-06 57.7 12.6 36 21-56 137-177 (405)
330 KOG1532 GTPase XAB1, interacts 95.9 0.017 3.6E-07 60.0 6.2 38 16-54 15-56 (366)
331 PRK12402 replication factor C 95.8 0.057 1.2E-06 57.0 10.7 24 22-45 38-61 (337)
332 COG5192 BMS1 GTP-binding prote 95.8 0.047 1E-06 61.2 9.9 111 481-603 603-749 (1077)
333 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.8 0.063 1.4E-06 50.3 9.6 86 18-103 24-117 (144)
334 TIGR01650 PD_CobS cobaltochela 95.8 0.0098 2.1E-07 63.5 4.5 31 22-52 66-96 (327)
335 PRK14723 flhF flagellar biosyn 95.8 0.064 1.4E-06 63.3 11.4 39 19-57 184-227 (767)
336 cd04163 Era Era subfamily. Er 95.7 0.046 9.9E-07 50.1 8.3 24 20-43 3-26 (168)
337 TIGR02397 dnaX_nterm DNA polym 95.7 0.097 2.1E-06 55.8 11.9 30 16-45 32-61 (355)
338 PRK07952 DNA replication prote 95.7 0.032 6.9E-07 57.4 7.7 102 21-122 100-213 (244)
339 COG2884 FtsE Predicted ATPase 95.7 0.064 1.4E-06 53.2 9.3 28 18-45 26-53 (223)
340 PRK00440 rfc replication facto 95.7 0.065 1.4E-06 56.0 10.2 22 23-44 41-62 (319)
341 PRK07994 DNA polymerase III su 95.7 0.054 1.2E-06 63.0 10.3 110 16-125 34-169 (647)
342 cd00984 DnaB_C DnaB helicase C 95.7 0.11 2.3E-06 52.5 11.4 36 18-53 11-50 (242)
343 PF00308 Bac_DnaA: Bacterial d 95.7 0.1 2.2E-06 52.6 11.1 22 22-43 36-57 (219)
344 PF05729 NACHT: NACHT domain 95.6 0.0088 1.9E-07 55.7 3.2 25 21-45 1-25 (166)
345 TIGR00678 holB DNA polymerase 95.6 0.093 2E-06 51.1 10.5 30 16-45 10-39 (188)
346 KOG4235 Mitochondrial thymidin 95.6 0.09 2E-06 52.2 10.1 38 107-147 156-193 (244)
347 KOG0651 26S proteasome regulat 95.6 0.032 7E-07 58.9 7.4 60 17-76 163-222 (388)
348 KOG0609 Calcium/calmodulin-dep 95.6 0.12 2.5E-06 57.9 12.1 143 18-166 338-515 (542)
349 PF13521 AAA_28: AAA domain; P 95.6 0.0091 2E-07 56.8 3.2 22 23-45 2-23 (163)
350 PRK12422 chromosomal replicati 95.6 0.13 2.9E-06 57.4 12.7 35 22-56 143-180 (445)
351 PRK00149 dnaA chromosomal repl 95.6 0.12 2.5E-06 57.8 12.3 24 21-44 149-172 (450)
352 PRK08903 DnaA regulatory inact 95.6 0.11 2.3E-06 52.2 10.9 35 19-53 41-78 (227)
353 TIGR01618 phage_P_loop phage n 95.6 0.014 3E-07 59.1 4.5 25 17-41 9-33 (220)
354 PRK08181 transposase; Validate 95.6 0.031 6.8E-07 58.3 7.2 103 20-122 106-217 (269)
355 PF10662 PduV-EutP: Ethanolami 95.5 0.023 5.1E-07 53.8 5.6 78 22-99 3-87 (143)
356 PF06068 TIP49: TIP49 C-termin 95.5 0.022 4.7E-07 61.7 6.0 45 20-64 50-96 (398)
357 TIGR03877 thermo_KaiC_1 KaiC d 95.5 0.029 6.2E-07 57.1 6.7 63 17-86 18-90 (237)
358 PF13191 AAA_16: AAA ATPase do 95.5 0.01 2.2E-07 56.6 3.2 30 16-45 20-49 (185)
359 PF07724 AAA_2: AAA domain (Cd 95.5 0.022 4.8E-07 55.3 5.5 38 21-58 4-45 (171)
360 PF13245 AAA_19: Part of AAA d 95.5 0.012 2.7E-07 49.5 3.3 24 19-42 9-32 (76)
361 TIGR03881 KaiC_arch_4 KaiC dom 95.5 0.03 6.5E-07 56.2 6.6 25 18-42 18-42 (229)
362 PRK10751 molybdopterin-guanine 95.5 0.014 3.1E-07 57.0 4.0 28 18-45 4-31 (173)
363 COG1224 TIP49 DNA helicase TIP 95.5 0.025 5.4E-07 60.7 6.1 57 19-75 64-122 (450)
364 TIGR03709 PPK2_rel_1 polyphosp 95.5 0.12 2.7E-06 53.7 11.0 110 18-129 54-185 (264)
365 PRK05342 clpX ATP-dependent pr 95.4 0.013 2.8E-07 64.7 4.0 36 21-56 109-144 (412)
366 KOG0737 AAA+-type ATPase [Post 95.4 0.019 4.2E-07 61.7 5.1 53 16-68 123-175 (386)
367 PRK05896 DNA polymerase III su 95.4 0.11 2.3E-06 60.0 11.4 112 16-127 34-171 (605)
368 cd03222 ABC_RNaseL_inhibitor T 95.4 0.042 9.1E-07 53.7 7.1 82 18-99 23-113 (177)
369 cd00820 PEPCK_HprK Phosphoenol 95.4 0.022 4.7E-07 51.4 4.6 23 19-41 14-36 (107)
370 TIGR03708 poly_P_AMP_trns poly 95.4 0.13 2.7E-06 58.1 11.5 112 17-130 37-170 (493)
371 PRK12269 bifunctional cytidyla 95.4 0.013 2.9E-07 70.0 4.0 34 21-56 35-68 (863)
372 PRK05703 flhF flagellar biosyn 95.3 0.06 1.3E-06 59.7 8.9 38 20-57 221-263 (424)
373 cd01120 RecA-like_NTPases RecA 95.3 0.017 3.7E-07 53.3 3.9 23 22-44 1-23 (165)
374 PRK06835 DNA replication prote 95.3 0.042 9.1E-07 59.0 7.4 102 20-122 183-297 (329)
375 PF13189 Cytidylate_kin2: Cyti 95.3 0.16 3.4E-06 49.5 10.8 96 22-127 1-136 (179)
376 PRK14969 DNA polymerase III su 95.3 0.1 2.2E-06 59.6 10.7 30 16-45 34-63 (527)
377 PRK12727 flagellar biosynthesi 95.3 0.089 1.9E-06 59.7 10.1 40 18-57 348-392 (559)
378 KOG0734 AAA+-type ATPase conta 95.3 0.028 6E-07 63.0 5.9 39 17-55 334-372 (752)
379 TIGR03015 pepcterm_ATPase puta 95.3 0.015 3.2E-07 59.5 3.6 28 18-45 41-68 (269)
380 PRK06526 transposase; Provisio 95.3 0.036 7.9E-07 57.3 6.5 119 19-146 97-224 (254)
381 PF04665 Pox_A32: Poxvirus A32 95.3 0.094 2E-06 53.9 9.3 29 18-46 11-39 (241)
382 PF06745 KaiC: KaiC; InterPro 95.3 0.013 2.8E-07 58.8 3.0 37 17-53 16-56 (226)
383 PF07726 AAA_3: ATPase family 95.2 0.015 3.3E-07 54.1 3.2 29 23-51 2-30 (131)
384 PF02367 UPF0079: Uncharacteri 95.2 0.022 4.8E-07 52.5 4.2 29 17-45 12-40 (123)
385 PRK14965 DNA polymerase III su 95.2 0.14 3.1E-06 59.0 11.6 111 16-127 34-171 (576)
386 KOG0731 AAA+-type ATPase conta 95.2 0.025 5.4E-07 66.1 5.4 39 16-54 340-378 (774)
387 COG0467 RAD55 RecA-superfamily 95.2 0.022 4.8E-07 58.6 4.5 71 17-87 20-93 (260)
388 PRK14721 flhF flagellar biosyn 95.2 0.11 2.4E-06 57.5 10.2 72 18-90 189-282 (420)
389 PRK14950 DNA polymerase III su 95.2 0.12 2.5E-06 59.8 10.8 111 16-127 34-172 (585)
390 PRK06995 flhF flagellar biosyn 95.1 0.085 1.8E-06 59.4 9.3 40 18-57 254-298 (484)
391 TIGR00382 clpX endopeptidase C 95.1 0.021 4.5E-07 63.0 4.4 33 21-53 117-149 (413)
392 COG1117 PstB ABC-type phosphat 95.1 0.022 4.9E-07 57.3 4.1 28 17-44 30-57 (253)
393 PRK05564 DNA polymerase III su 95.1 0.13 2.7E-06 54.6 10.1 112 16-127 22-145 (313)
394 PRK10733 hflB ATP-dependent me 95.1 0.039 8.5E-07 64.4 6.8 37 20-56 185-221 (644)
395 PRK14086 dnaA chromosomal repl 95.1 0.17 3.6E-06 58.5 11.5 23 22-44 316-338 (617)
396 PRK06647 DNA polymerase III su 95.1 0.17 3.6E-06 58.2 11.7 112 16-127 34-171 (563)
397 PF03266 NTPase_1: NTPase; In 95.1 0.017 3.7E-07 56.0 3.1 22 23-44 2-23 (168)
398 PRK13833 conjugal transfer pro 95.1 0.38 8.2E-06 51.6 13.6 105 20-126 144-263 (323)
399 TIGR02788 VirB11 P-type DNA tr 95.0 0.37 8E-06 51.1 13.4 125 19-146 143-285 (308)
400 PRK14970 DNA polymerase III su 95.0 0.12 2.5E-06 55.9 9.8 30 16-45 35-64 (367)
401 CHL00206 ycf2 Ycf2; Provisiona 95.0 0.044 9.5E-07 69.4 7.1 42 17-58 1627-1668(2281)
402 KOG0727 26S proteasome regulat 95.0 0.03 6.4E-07 57.6 4.7 37 17-53 186-222 (408)
403 cd00983 recA RecA is a bacter 95.0 0.089 1.9E-06 56.4 8.6 37 17-53 52-91 (325)
404 PRK09435 membrane ATPase/prote 95.0 0.032 7E-07 59.9 5.3 38 17-54 53-93 (332)
405 PRK08533 flagellar accessory p 95.0 0.042 9E-07 55.9 5.9 26 18-43 22-47 (230)
406 COG0324 MiaA tRNA delta(2)-iso 95.0 0.077 1.7E-06 56.3 8.0 36 19-56 2-37 (308)
407 PRK14954 DNA polymerase III su 95.0 0.17 3.7E-06 58.7 11.5 30 16-45 34-63 (620)
408 cd01124 KaiC KaiC is a circadi 95.0 0.037 8E-07 53.2 5.3 32 22-53 1-35 (187)
409 PRK14951 DNA polymerase III su 95.0 0.19 4E-06 58.4 11.8 30 16-45 34-63 (618)
410 cd03216 ABC_Carb_Monos_I This 95.0 0.18 3.9E-06 48.2 10.0 82 18-99 24-124 (163)
411 PF08477 Miro: Miro-like prote 95.0 0.021 4.5E-07 50.7 3.2 22 23-44 2-23 (119)
412 COG0470 HolB ATPase involved i 95.0 0.12 2.7E-06 53.9 9.6 29 17-45 21-49 (325)
413 PRK07133 DNA polymerase III su 95.0 0.17 3.7E-06 59.5 11.4 111 16-127 36-170 (725)
414 TIGR01420 pilT_fam pilus retra 94.9 0.23 4.9E-06 53.6 11.7 107 19-126 121-243 (343)
415 PF00910 RNA_helicase: RNA hel 94.9 0.018 3.8E-07 51.4 2.7 23 23-45 1-23 (107)
416 PRK14088 dnaA chromosomal repl 94.9 0.27 5.9E-06 54.8 12.6 23 22-44 132-154 (440)
417 PRK00089 era GTPase Era; Revie 94.9 0.15 3.1E-06 53.3 9.9 25 19-43 4-28 (292)
418 PRK05707 DNA polymerase III su 94.9 0.26 5.6E-06 52.9 11.8 122 5-127 7-158 (328)
419 KOG0741 AAA+-type ATPase [Post 94.9 0.24 5.3E-06 55.7 11.6 31 21-51 539-569 (744)
420 PRK08691 DNA polymerase III su 94.9 0.13 2.9E-06 60.0 10.2 30 16-45 34-63 (709)
421 COG4240 Predicted kinase [Gene 94.8 0.058 1.3E-06 54.8 6.2 66 15-80 45-134 (300)
422 COG0378 HypB Ni2+-binding GTPa 94.8 0.034 7.4E-07 55.1 4.5 41 17-57 9-52 (202)
423 cd01122 GP4d_helicase GP4d_hel 94.8 0.22 4.8E-06 51.1 10.8 37 17-53 27-67 (271)
424 TIGR00101 ureG urease accessor 94.8 0.027 5.9E-07 56.0 3.8 26 20-45 1-26 (199)
425 PRK13768 GTPase; Provisional 94.8 0.034 7.3E-07 57.3 4.7 36 19-54 1-39 (253)
426 PRK08451 DNA polymerase III su 94.8 0.16 3.4E-06 57.9 10.4 112 16-127 32-169 (535)
427 PF03215 Rad17: Rad17 cell cyc 94.8 0.029 6.2E-07 63.7 4.5 29 18-46 43-71 (519)
428 TIGR00073 hypB hydrogenase acc 94.8 0.027 6E-07 55.9 3.8 29 17-45 19-47 (207)
429 PF00005 ABC_tran: ABC transpo 94.8 0.018 3.9E-07 52.6 2.3 28 18-45 9-36 (137)
430 KOG0741 AAA+-type ATPase [Post 94.8 0.14 3.1E-06 57.5 9.5 126 21-174 257-387 (744)
431 PF03796 DnaB_C: DnaB-like hel 94.7 0.14 2.9E-06 52.7 8.9 96 18-113 17-138 (259)
432 PF01926 MMR_HSR1: 50S ribosom 94.7 0.025 5.4E-07 50.4 3.0 21 23-43 2-22 (116)
433 PRK14959 DNA polymerase III su 94.7 0.27 5.9E-06 57.0 12.1 29 17-45 35-63 (624)
434 PRK08939 primosomal protein Dn 94.7 0.11 2.4E-06 55.2 8.3 126 19-146 155-291 (306)
435 PRK04328 hypothetical protein; 94.7 0.07 1.5E-06 54.8 6.6 68 18-86 21-92 (249)
436 TIGR02639 ClpA ATP-dependent C 94.6 0.063 1.4E-06 63.6 7.0 24 21-44 204-227 (731)
437 PRK06305 DNA polymerase III su 94.6 0.19 4.2E-06 56.2 10.4 30 16-45 35-64 (451)
438 PRK08099 bifunctional DNA-bind 94.6 0.036 7.9E-07 61.0 4.6 40 17-56 216-256 (399)
439 COG0552 FtsY Signal recognitio 94.6 0.13 2.8E-06 55.0 8.5 74 16-89 135-232 (340)
440 PRK08058 DNA polymerase III su 94.6 0.29 6.2E-06 52.5 11.3 113 15-127 23-162 (329)
441 COG0396 sufC Cysteine desulfur 94.6 0.029 6.3E-07 57.0 3.5 39 18-58 28-66 (251)
442 TIGR00750 lao LAO/AO transport 94.6 0.046 1E-06 57.7 5.1 39 16-54 30-71 (300)
443 COG1136 SalX ABC-type antimicr 94.6 0.027 5.8E-07 57.3 3.2 25 18-42 29-53 (226)
444 PRK13851 type IV secretion sys 94.6 0.32 6.9E-06 52.6 11.5 105 19-125 161-283 (344)
445 cd01129 PulE-GspE PulE/GspE Th 94.5 0.24 5.2E-06 51.5 10.3 105 19-124 79-195 (264)
446 PRK14729 miaA tRNA delta(2)-is 94.5 0.12 2.5E-06 54.9 8.0 34 20-56 4-37 (300)
447 TIGR02012 tigrfam_recA protein 94.5 0.12 2.6E-06 55.3 8.1 37 17-53 52-91 (321)
448 cd00267 ABC_ATPase ABC (ATP-bi 94.5 0.23 5E-06 46.8 9.3 82 18-99 23-122 (157)
449 COG3172 NadR Predicted ATPase/ 94.5 0.58 1.3E-05 45.3 11.8 28 20-47 8-35 (187)
450 PF03976 PPK2: Polyphosphate k 94.5 0.025 5.5E-07 57.6 2.9 109 17-130 28-161 (228)
451 PRK09111 DNA polymerase III su 94.5 0.23 5.1E-06 57.4 11.0 30 16-45 42-71 (598)
452 TIGR02237 recomb_radB DNA repa 94.5 0.038 8.2E-07 54.6 4.0 38 17-54 9-49 (209)
453 PRK09169 hypothetical protein; 94.5 0.12 2.5E-06 66.2 9.0 95 21-127 2111-2222(2316)
454 cd01394 radB RadB. The archaea 94.5 0.037 8.1E-07 55.1 4.0 37 17-53 16-55 (218)
455 PRK14948 DNA polymerase III su 94.5 0.22 4.8E-06 57.9 10.8 28 18-45 36-63 (620)
456 COG1855 ATPase (PilT family) [ 94.4 0.027 5.8E-07 62.0 3.0 26 20-45 263-288 (604)
457 PF13555 AAA_29: P-loop contai 94.4 0.039 8.4E-07 44.9 3.2 23 21-43 24-46 (62)
458 PF03205 MobB: Molybdopterin g 94.4 0.036 7.8E-07 52.1 3.5 24 22-45 2-25 (140)
459 PF13479 AAA_24: AAA domain 94.4 0.11 2.3E-06 52.1 7.1 22 19-40 2-23 (213)
460 COG3839 MalK ABC-type sugar tr 94.4 0.03 6.5E-07 60.2 3.3 25 18-42 27-51 (338)
461 TIGR01526 nadR_NMN_Atrans nico 94.3 0.045 9.7E-07 58.6 4.4 29 20-48 162-190 (325)
462 PRK00411 cdc6 cell division co 94.3 0.12 2.6E-06 56.0 7.7 27 18-44 53-79 (394)
463 TIGR00763 lon ATP-dependent pr 94.3 0.049 1.1E-06 64.9 5.0 35 19-53 346-380 (775)
464 KOG2004 Mitochondrial ATP-depe 94.3 0.039 8.4E-07 63.7 3.9 37 17-53 435-471 (906)
465 PRK07940 DNA polymerase III su 94.3 0.55 1.2E-05 51.7 12.8 27 19-45 35-61 (394)
466 cd01918 HprK_C HprK/P, the bif 94.3 0.044 9.6E-07 52.2 3.7 34 20-56 14-47 (149)
467 PRK05563 DNA polymerase III su 94.2 0.24 5.2E-06 56.9 10.4 30 16-45 34-63 (559)
468 PRK14953 DNA polymerase III su 94.2 0.44 9.5E-06 53.9 12.2 30 16-45 34-63 (486)
469 TIGR02525 plasmid_TraJ plasmid 94.2 0.4 8.8E-06 52.4 11.5 104 20-125 149-272 (372)
470 TIGR02524 dot_icm_DotB Dot/Icm 94.2 0.39 8.5E-06 52.2 11.4 106 19-125 133-259 (358)
471 TIGR00176 mobB molybdopterin-g 94.2 0.036 7.7E-07 53.0 2.9 24 22-45 1-24 (155)
472 TIGR02782 TrbB_P P-type conjug 94.2 0.54 1.2E-05 49.8 12.1 104 20-125 132-251 (299)
473 TIGR00436 era GTP-binding prot 94.1 0.23 5E-06 51.4 9.1 22 22-43 2-23 (270)
474 PF01443 Viral_helicase1: Vira 94.1 0.032 6.9E-07 55.6 2.7 22 23-44 1-22 (234)
475 PRK14490 putative bifunctional 94.1 0.049 1.1E-06 59.2 4.3 30 18-47 3-32 (369)
476 COG2255 RuvB Holliday junction 94.1 0.082 1.8E-06 55.4 5.6 70 20-95 52-121 (332)
477 COG1219 ClpX ATP-dependent pro 94.1 0.052 1.1E-06 57.5 4.2 36 21-56 98-133 (408)
478 cd03238 ABC_UvrA The excision 94.1 0.042 9.1E-07 53.7 3.3 26 18-43 19-44 (176)
479 PRK06731 flhF flagellar biosyn 94.1 0.3 6.4E-06 51.1 9.7 38 19-56 74-114 (270)
480 PF00437 T2SE: Type II/IV secr 94.1 0.055 1.2E-06 55.8 4.3 105 20-126 127-245 (270)
481 cd03292 ABC_FtsE_transporter F 94.1 0.042 9.1E-07 54.4 3.3 27 18-44 25-51 (214)
482 cd03255 ABC_MJ0796_Lo1CDE_FtsE 94.0 0.042 9.2E-07 54.6 3.3 27 18-44 28-54 (218)
483 PRK05973 replicative DNA helic 94.0 0.068 1.5E-06 54.8 4.8 36 18-53 62-100 (237)
484 cd03225 ABC_cobalt_CbiO_domain 94.0 0.045 9.7E-07 54.1 3.4 27 18-44 25-51 (211)
485 PF03193 DUF258: Protein of un 94.0 0.043 9.4E-07 53.0 3.2 25 20-44 35-59 (161)
486 PF13086 AAA_11: AAA domain; P 94.0 0.042 9.2E-07 53.9 3.2 23 22-44 19-41 (236)
487 TIGR01166 cbiO cobalt transpor 94.0 0.044 9.5E-07 53.4 3.3 27 18-44 16-42 (190)
488 PRK10463 hydrogenase nickel in 94.0 0.074 1.6E-06 56.1 5.2 38 17-54 101-140 (290)
489 TIGR00960 3a0501s02 Type II (G 94.0 0.042 9.2E-07 54.6 3.2 27 18-44 27-53 (216)
490 PRK15455 PrkA family serine pr 94.0 0.039 8.5E-07 63.0 3.2 29 17-45 100-128 (644)
491 cd03224 ABC_TM1139_LivF_branch 94.0 0.046 1E-06 54.4 3.5 27 18-44 24-50 (222)
492 KOG0736 Peroxisome assembly fa 94.0 0.089 1.9E-06 61.3 6.0 115 17-164 702-816 (953)
493 TIGR02673 FtsE cell division A 94.0 0.044 9.6E-07 54.3 3.3 27 18-44 26-52 (214)
494 TIGR00231 small_GTP small GTP- 93.9 0.044 9.5E-07 49.4 2.9 22 22-43 3-24 (161)
495 PRK09361 radB DNA repair and r 93.9 0.086 1.9E-06 52.8 5.3 38 17-54 20-60 (225)
496 TIGR02655 circ_KaiC circadian 93.9 0.059 1.3E-06 60.7 4.5 67 18-84 19-89 (484)
497 cd00154 Rab Rab family. Rab G 93.9 0.045 9.7E-07 49.8 3.0 21 23-43 3-23 (159)
498 cd03269 ABC_putative_ATPase Th 93.9 0.048 1E-06 53.9 3.4 27 18-44 24-50 (210)
499 cd03262 ABC_HisP_GlnQ_permease 93.9 0.048 1E-06 54.0 3.3 27 18-44 24-50 (213)
500 cd03226 ABC_cobalt_CbiO_domain 93.9 0.046 1E-06 53.9 3.2 27 18-44 24-50 (205)
No 1
>cd02904 Macro_H2A_like Macro domain, Macro_H2A_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family are similar to macroH2A, a variant of the major-type core histone H2A, which contains an N-terminal H2A domain and a C-terminal nonhistone macro domain. Histone macroH2A is enriched on the inactive X chromosome of mammalian female cells. It does not bind poly ADP-r
Probab=99.95 E-value=2.3e-27 Score=231.03 Aligned_cols=115 Identities=19% Similarity=0.123 Sum_probs=102.6
Q ss_pred cCCeEEEEEEccc--ceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhc---CCCCCCCEEEecC
Q 007244 340 INPKKFFTFVGDI--TRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERA---KSLYPGNSVIVPL 414 (611)
Q Consensus 340 ~~~~~v~i~~GDI--t~~~~~~~~~~daIVN~aN~~L~~~ggGVa~aI~~aAG~~l~~e~~~~~---~~~~~G~~v~T~l 414 (611)
+.+.+|.|++||| |++. +||||||||.+|. ++|||++||+++||++|++||+++. +++++|++++|+
T Consensus 15 ~~~~~i~i~~gDI~~t~~~------vDaIVNaaN~~L~-~ggGV~~AI~~aaG~~l~~ec~~~~~~~g~~~~G~~~iT~- 86 (186)
T cd02904 15 FLGQKLSLVQSDISIGSID------VEGIVHPTNADID-LKGEVGNALEKKGGKEFVEAVKELRKSNGPLEIAGAAVSQ- 86 (186)
T ss_pred cCCCEEEEEECCcccccee------ccEEEcCCccccC-CCCcHhHHHHHHcCHHHHHHHHHHHHhcCCCCCCCEEEcc-
Confidence 4568899999999 9987 9999999999999 8999999999999999999998763 789999999998
Q ss_pred CCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH-----HHhhccccCCC
Q 007244 415 PSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEKLS 478 (611)
Q Consensus 415 ~~~~~~~~~l~~k~ViH~vgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a-----~siafp~~~~~ 478 (611)
+ .+|+|+||||+|||.|+.. +.+++|++||++||++| .|||||+||-+
T Consensus 87 -----a-~~Lp~k~VIHtVgP~~~~~----------~~~~~L~~~~~~~L~~A~e~~~~SIAfPaIstG 139 (186)
T cd02904 87 -----A-HGLPAKFVIHCHSPQWGSD----------KCEEQLEKTVKNCLAAAEDKKLKSIAFPSLPSG 139 (186)
T ss_pred -----C-CCCCCCEEEEeCCCCCCCC----------chHHHHHHHHHHHHHHHHHcCCCEEEECCcccC
Confidence 3 4488999999999999654 23689999999999997 59999999943
No 2
>cd02905 Macro_GDAP2_like Macro domain, GDAP2_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family contains proteins similar to human GDAP2, the ganglioside induced differentiation associated protein 2, whose gene is expressed at a higher level in differentiated Neuro2a cells compared with non-differentiated cells. GDAP2 contains an N-terminal macro domain and a C-terminal
Probab=99.94 E-value=3.8e-27 Score=220.61 Aligned_cols=113 Identities=20% Similarity=0.266 Sum_probs=101.3
Q ss_pred EEEEEEcccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhcCCCCCCCEEEecCCCCCCCCCC
Q 007244 344 KFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPLCGR 423 (611)
Q Consensus 344 ~v~i~~GDIt~~~~~~~~~~daIVN~aN~~L~~~ggGVa~aI~~aAG~~l~~e~~~~~~~~~~G~~v~T~l~~~~~~~~~ 423 (611)
+|.|++||||++. +|||||+||+.|. ++|||++||+++||++|++||++. +++++|++++|+ +| +
T Consensus 2 ki~l~~GdIt~~~------vDaIVNaan~~l~-~~ggv~~aI~~aaG~~l~~e~~~~-~~~~~G~~~~T~------~~-~ 66 (140)
T cd02905 2 RIVLWEGDICNLN------VDAIVNSTNETLT-DKNPISDKIFARAGSELREEIQTL-GGCRTGEAKLTK------GY-N 66 (140)
T ss_pred eEEEEeCccCccc------CCEEEeCCccccC-CCCcHHHHHHHHhCHHHHHHHHHh-CCCCCCcEEEec------CC-C
Confidence 5889999999998 9999999999999 899999999999999999999987 679999999998 33 4
Q ss_pred CCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH-----HHhhccccCCC
Q 007244 424 EGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEKLS 478 (611)
Q Consensus 424 l~~k~ViH~vgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a-----~siafp~~~~~ 478 (611)
|+|+||||+|||+|+...++ .+.++|++||+++|++| .|||||+||-+
T Consensus 67 L~~k~VIH~vgP~~~~~~~~-------~~~~~L~~~~~~~L~~a~~~~~~SIAfPai~tG 119 (140)
T cd02905 67 LPARFIIHTVGPKYNVKYRT-------AAENALYSCYRNVLQLAKELGLESIALCVISSE 119 (140)
T ss_pred CCccEEEEecCCccCCCCCc-------HHHHHHHHHHHHHHHHHHHcCCCEEEECCcccC
Confidence 78999999999999875432 45789999999999986 59999999933
No 3
>PRK04143 hypothetical protein; Provisional
Probab=99.92 E-value=4.9e-25 Score=225.34 Aligned_cols=118 Identities=29% Similarity=0.322 Sum_probs=101.6
Q ss_pred CCeEEEEEEcccceecccCcccccEEEeCCCCCCcCCC-----ChhhHHHHHhhcHHHHHHHHHhc----CCCCCCCEEE
Q 007244 341 NPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGG-----GGVNAAIFSAAGPALEVATAERA----KSLYPGNSVI 411 (611)
Q Consensus 341 ~~~~v~i~~GDIt~~~~~~~~~~daIVN~aN~~L~~~g-----gGVa~aI~~aAG~~l~~e~~~~~----~~~~~G~~v~ 411 (611)
.+.+|.|++||||++. +||||||||+.|. ++ |||++||+++||++|+++|++.. +.+++|++++
T Consensus 81 ~~~~i~i~~GDIt~l~------vDAIVNAANs~L~-g~~~p~~ggId~aI~~aAG~~L~~eC~~~~~~~g~~~~~G~a~i 153 (264)
T PRK04143 81 KYDNIFLWQGDITRLK------VDAIVNAANSRLL-GCFQPNHDCIDNAIHTFAGVQLRLDCAEIMTEQGRKEATGQAKI 153 (264)
T ss_pred CCCEEEEEECCcceee------cCEEEeCcccccc-cCCCCCCCcHHHHHHHHhChHHHHHHHHHHHHcCCCCCCceEEE
Confidence 5688999999999998 9999999999998 44 89999999999999999999873 4689999999
Q ss_pred ecCCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH-----HHhhccccCCC
Q 007244 412 VPLPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEKLS 478 (611)
Q Consensus 412 T~l~~~~~~~~~l~~k~ViH~vgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a-----~siafp~~~~~ 478 (611)
|+ +| .|+|+||||||||.|+.+.. .....++|++||++||++| .||||||||-+
T Consensus 154 T~------~~-nLp~kyVIHtVgP~~~~g~~------~~~~~~~L~~cy~s~L~~A~~~~~kSIAfP~IsTG 212 (264)
T PRK04143 154 TR------AY-NLPAKYVIHTVGPIIRKQPV------SPIRADLLASCYRSCLKLAEKAGLKSIAFCCISTG 212 (264)
T ss_pred ec------CC-CCCCCEEEEECCCcccCCCC------CcchHHHHHHHHHHHHHHHHHcCCCEEEeccccCC
Confidence 98 34 47899999999999987321 1245789999999999987 49999999933
No 4
>cd02906 Macro_1 Macro domain, Unknown family 1. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins containing a macro domain, either as a stand-alone domain or in addition to a C-terminal SIR2 (silent information regulator 2) domain.
Probab=99.92 E-value=8e-25 Score=206.63 Aligned_cols=116 Identities=28% Similarity=0.279 Sum_probs=99.2
Q ss_pred EEEEEEcccceecccCcccccEEEeCCCCCCcC----CCChhhHHHHHhhcHHHHHHHHHhc----CCCCCCCEEEecCC
Q 007244 344 KFFTFVGDITRLYTGGGLCCNVIANAANWRLKP----GGGGVNAAIFSAAGPALEVATAERA----KSLYPGNSVIVPLP 415 (611)
Q Consensus 344 ~v~i~~GDIt~~~~~~~~~~daIVN~aN~~L~~----~ggGVa~aI~~aAG~~l~~e~~~~~----~~~~~G~~v~T~l~ 415 (611)
+|+|++|||+++. +||||||||..|.. ++|||++||+++||++|+++|+++. +.+++|++++|+
T Consensus 1 ~i~v~~GdIt~~~------~DaIVNaaN~~l~~~~g~~~ggv~~aI~~~aG~~l~~e~~~~~~~~g~~~~~G~a~~T~-- 72 (147)
T cd02906 1 SIYLWKGDITTLK------VDAIVNAANSTLLGCFQPLHRCIDNIIHTFAGPQLRQACFELMTKQGREEPTGQAKITP-- 72 (147)
T ss_pred CeEEEECCcCCcc------CCEEECCCCcccCcCcCCCCCcHHHHHHHHhCHHHHHHHHHHHHhcCCCCCCCeEEEEe--
Confidence 4789999999998 99999999999972 3489999999999999999998873 368999999998
Q ss_pred CCCCCCCCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH-----HHhhccccCCC
Q 007244 416 STSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEKLS 478 (611)
Q Consensus 416 ~~~~~~~~l~~k~ViH~vgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a-----~siafp~~~~~ 478 (611)
++ .|+|+||||+|||.|+..... ....++|++||+++|+.+ .|||||+||-+
T Consensus 73 ----~~-~L~~k~VIHavgP~~~~~~~~------~~~~~~L~~~~~~~L~~a~~~~~~sIA~P~i~tG 129 (147)
T cd02906 73 ----GY-NLPAKYVIHTVGPIIERGLTT------PIHRDLLAKCYLSCLDLAEKAGLKSIAFCCISTG 129 (147)
T ss_pred ----CC-CCCCCEEEEECCCcccCCCCC------ccHHHHHHHHHHHHHHHHHHcCCCEEEECccccc
Confidence 33 478899999999999875321 145789999999999987 59999999933
No 5
>cd02908 Macro_Appr_pase_like Macro domain, Appr-1"-pase_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins that show similarity to Appr-1"-pase, containing conserved putative active site residues. Appr-1"-pase is a phosphatase specific for ADP-ribose-1"-monophosphate.
Probab=99.91 E-value=4.8e-24 Score=204.93 Aligned_cols=112 Identities=35% Similarity=0.400 Sum_probs=99.7
Q ss_pred EEEEEEcccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhcCCCCCCCEEEecCCCCCCCCCC
Q 007244 344 KFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPLCGR 423 (611)
Q Consensus 344 ~v~i~~GDIt~~~~~~~~~~daIVN~aN~~L~~~ggGVa~aI~~aAG~~l~~e~~~~~~~~~~G~~v~T~l~~~~~~~~~ 423 (611)
+|+|++|||+++. +||||||||..|. ++|||++||+++||++|++||++. +++++|++++|+ + +.
T Consensus 1 ~i~i~~GdI~~~~------~daIVn~an~~l~-~~ggv~~ai~~~~G~~l~~e~~~~-~~~~~G~~v~T~------~-~~ 65 (165)
T cd02908 1 KIEIIQGDITKLE------VDAIVNAANSSLL-GGGGVDGAIHRAAGPELLEECREL-RGCPTGEAVITS------G-YN 65 (165)
T ss_pred CeEEEecccceee------cCEEEECCCCccc-CCCcHHHHHHHHhCHHHHHHHHHh-CCCCCCCEEEee------C-CC
Confidence 4789999999998 9999999999999 899999999999999999999987 678999999998 2 34
Q ss_pred CCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH-----HHhhccccCCC
Q 007244 424 EGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEKLS 478 (611)
Q Consensus 424 l~~k~ViH~vgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a-----~siafp~~~~~ 478 (611)
|+|++|||+|||.|+.... ...++|++||+++|+.+ .|||||+||-+
T Consensus 66 l~~~~IiH~v~P~~~~~~~--------~~~~~L~~~~~~~L~~a~~~~~~sIa~P~igtG 117 (165)
T cd02908 66 LPAKYVIHTVGPVWRGGQH--------NEAELLASCYRNSLELARENGLRSIAFPAISTG 117 (165)
T ss_pred CCCCEEEEEcCCcccCCCC--------cHHHHHHHHHHHHHHHHHHcCCCEEEECceecC
Confidence 7899999999999976522 35789999999999976 58999999943
No 6
>cd02907 Macro_Af1521_BAL_like Macro domain, Af1521- and BAL-like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. The macro domains in this family show similarity to Af1521, a protein from Archaeoglobus fulgidus containing a stand-alone macro domain. Af1521 binds ADP-ribose and exhibits phosphatase activity toward Appr-1"-p. Also included in this family are the N-terminal (or first) macro domains
Probab=99.90 E-value=1.1e-23 Score=204.25 Aligned_cols=116 Identities=30% Similarity=0.378 Sum_probs=102.9
Q ss_pred CeEEEEEEcccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHh---cCCCCCCCEEEecCCCCC
Q 007244 342 PKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAER---AKSLYPGNSVIVPLPSTS 418 (611)
Q Consensus 342 ~~~v~i~~GDIt~~~~~~~~~~daIVN~aN~~L~~~ggGVa~aI~~aAG~~l~~e~~~~---~~~~~~G~~v~T~l~~~~ 418 (611)
|++|+|++|||+++. +||||||+|..|. ++|||++||+++||++|+++|++. .+++++|++++|+
T Consensus 1 ~~~i~i~~GdI~~~~------~DaIVn~an~~~~-~~ggv~~ai~~~~G~~l~~e~~~~~~~~g~~~~G~~~~T~----- 68 (175)
T cd02907 1 GVTLSVIKGDITRFP------VDAIVNAANEDLK-HGGGLALAIVKAGGPEIQEESDEYVRKNGPVPTGEVVVTS----- 68 (175)
T ss_pred CcEEEEEECCcceee------cCEEEECCCCCcC-CCCCHHHHHHHHHhHHHHHHHHHHHHhcCCCCCCcEEEec-----
Confidence 578999999999997 9999999999999 899999999999999999999876 3789999999998
Q ss_pred CCCCCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH-----HHhhccccCCC
Q 007244 419 PLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEKLS 478 (611)
Q Consensus 419 ~~~~~l~~k~ViH~vgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a-----~siafp~~~~~ 478 (611)
+ +.|+|++|||+|||.|+.... ....++|++||++||+.+ .|||||+||-+
T Consensus 69 -~-~~L~~k~IiH~v~P~~~~~~~-------~~~~~~L~~~~~~~L~~a~~~~~~SIA~P~lgtG 124 (175)
T cd02907 69 -A-GKLPCKYVIHAVGPRWSGGEA-------EECVEKLKKAILNSLRKAEELGLRSIAIPAISSG 124 (175)
T ss_pred -C-CCCCCCEEEEeCCCcCCCCCC-------chHHHHHHHHHHHHHHHHHHcCCCEEEECCcccC
Confidence 2 447899999999999987532 246789999999999986 49999999933
No 7
>PRK00431 RNase III inhibitor; Provisional
Probab=99.90 E-value=1.7e-23 Score=203.26 Aligned_cols=116 Identities=34% Similarity=0.393 Sum_probs=103.3
Q ss_pred CCeEEEEEEcccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhc---CCCCCCCEEEecCCCC
Q 007244 341 NPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERA---KSLYPGNSVIVPLPST 417 (611)
Q Consensus 341 ~~~~v~i~~GDIt~~~~~~~~~~daIVN~aN~~L~~~ggGVa~aI~~aAG~~l~~e~~~~~---~~~~~G~~v~T~l~~~ 417 (611)
+|++|.|++|||+++. +||||||+|..|. ++|||++||+++||++|+++|+++. +++++|++++|+
T Consensus 1 ~~~~i~i~~Gdi~~~~------~daIVn~aN~~~~-~~ggva~aI~~~~G~~l~~e~~~~~~~~~~l~~G~~~~T~---- 69 (177)
T PRK00431 1 MGMRIEVVQGDITELE------VDAIVNAANSSLL-GGGGVDGAIHRAAGPEILEECRELRQQQGPCPTGEAVITS---- 69 (177)
T ss_pred CCcEEEEEeCCccccc------CCEEEECCCcccc-CCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEec----
Confidence 4789999999999997 9999999999999 8999999999999999999999873 789999999998
Q ss_pred CCCCCCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH-----HHhhccccCCC
Q 007244 418 SPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEKLS 478 (611)
Q Consensus 418 ~~~~~~l~~k~ViH~vgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a-----~siafp~~~~~ 478 (611)
+ +.|+|++|||+|||.|+.... .+.+.|++||+++|+.+ .|||||+||.+
T Consensus 70 --~-~~l~~~~IiH~v~P~~~~~~~--------~~~~~L~~~~~~~L~~a~~~~~~sIa~P~lgtG 124 (177)
T PRK00431 70 --A-GRLPAKYVIHTVGPVWRGGED--------NEAELLASAYRNSLRLAAELGLRSIAFPAISTG 124 (177)
T ss_pred --C-CCCCCCEEEEecCCeecCCCC--------cHHHHHHHHHHHHHHHHHHcCCceEEECccccC
Confidence 2 348899999999999986532 25789999999999876 59999999943
No 8
>cd02903 Macro_BAL_like Macro domain, BAL_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family show similarity to BAL (B-aggressive lymphoma) proteins, which contain one to three macro domains. Most BAL family macro domains belong to this family except for the most N-terminal domain in multiple-domain containing proteins. Most BAL proteins also contain a C-termin
Probab=99.89 E-value=5.8e-23 Score=191.70 Aligned_cols=110 Identities=25% Similarity=0.248 Sum_probs=96.0
Q ss_pred eEEEEEEcccceecccCcccccEEEeCCCCC-CcCCCChhhHHHHHhhcHHHHHHHHHhcCCCC-CCCEEEecCCCCCCC
Q 007244 343 KKFFTFVGDITRLYTGGGLCCNVIANAANWR-LKPGGGGVNAAIFSAAGPALEVATAERAKSLY-PGNSVIVPLPSTSPL 420 (611)
Q Consensus 343 ~~v~i~~GDIt~~~~~~~~~~daIVN~aN~~-L~~~ggGVa~aI~~aAG~~l~~e~~~~~~~~~-~G~~v~T~l~~~~~~ 420 (611)
.+|+|++|||++++ +||||||||.. +. ++|||+++|+++||++|+++|+++. ... +|++++|+ +
T Consensus 1 ~~i~i~~GdI~~~~------~DaIVN~an~~~~~-~~ggv~~aI~~~~G~~l~~~~~~~~-~~~~~G~~~vT~------~ 66 (137)
T cd02903 1 LTLQVAKGDIEDET------TDVIVNSVNPDLFL-LKGGVSKAILRKAGPELQKELDKAK-LGQTVGSVIVTK------G 66 (137)
T ss_pred CEEEEEeCccCCcc------CCEEEECCCCccCC-CCCCHHHHHHHhccHHHHHHHHHHc-CCCCCCeEEEec------C
Confidence 36899999999998 99999999999 66 8999999999999999999999873 344 69999998 2
Q ss_pred CCCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH-----HHhhccccCCC
Q 007244 421 CGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEKLS 478 (611)
Q Consensus 421 ~~~l~~k~ViH~vgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a-----~siafp~~~~~ 478 (611)
+.|+|++|||+++|+|... ..+.|++||++||+.+ .|||||+||-+
T Consensus 67 -~~L~~k~IiH~~~p~~~~~-----------~~~~l~~~~~~~L~~a~~~~~~SIAfP~igtG 117 (137)
T cd02903 67 -GNLPCKYVYHVVLPNWSNG-----------ALKILKDIVSECLEKCEELSYTSISFPAIGTG 117 (137)
T ss_pred -CCCCCCEEEEecCCCCCCc-----------hHHHHHHHHHHHHHHHHHCCCcEEEECCCcCc
Confidence 3478899999999998643 3689999999999986 59999999943
No 9
>COG2110 Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 [General function prediction only]
Probab=99.86 E-value=9.2e-22 Score=190.23 Aligned_cols=115 Identities=37% Similarity=0.458 Sum_probs=100.9
Q ss_pred CeEEEEEEcccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhc-----CCCCCCCEEEecCCC
Q 007244 342 PKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERA-----KSLYPGNSVIVPLPS 416 (611)
Q Consensus 342 ~~~v~i~~GDIt~~~~~~~~~~daIVN~aN~~L~~~ggGVa~aI~~aAG~~l~~e~~~~~-----~~~~~G~~v~T~l~~ 416 (611)
...|.+++||||++. +|+|||+||+.|. +||||+.||++++||+|+.+|.+.. +.+++|++++|+
T Consensus 2 ~~~i~~v~GDIt~~~------~daIVnaAN~~l~-~gGGVd~AI~~~~g~~l~~~~~~~~~~~~~~~~~~G~Avit~--- 71 (179)
T COG2110 2 MTNIRVVQGDITKLE------ADAIVNAANSQLL-GGGGVAGAIHRAAGPQLEEECAEIAPKRGGGRIPVGEAVITE--- 71 (179)
T ss_pred CceEEEEecccceee------hhheeecccccCC-CCCcHHHHHHHHhhHHHHHHHHHHhhhhcCCCCCceEEEEcc---
Confidence 457999999999997 9999999999999 9999999999999999999999973 337789999999
Q ss_pred CCCCCCCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH-----HHhhccccCCC
Q 007244 417 TSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEKLS 478 (611)
Q Consensus 417 ~~~~~~~l~~k~ViH~vgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a-----~siafp~~~~~ 478 (611)
..++..+||||+|||.|....+ ...+.|..||+++|+++ .|||||+|+.+
T Consensus 72 ----~~~l~a~~ViH~vgp~~~~g~~--------~~~e~l~~a~~~~l~~a~~~g~~SiAfPaistG 126 (179)
T COG2110 72 ----AGRLPAKYVIHTVGPSWRGGSK--------DEAELLAAAYRAALRLAKEAGVRSVAFPAISTG 126 (179)
T ss_pred ----CcCCCCCEEEecCCCcccCCCh--------hHHHHHHHHHHHHHHHHHHcCCceeecccccCc
Confidence 2446779999999999877633 34689999999999986 59999999944
No 10
>cd03330 Macro_2 Macro domain, Unknown family 2. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins containing a stand-alone macro domain.
Probab=99.86 E-value=3e-21 Score=178.87 Aligned_cols=109 Identities=30% Similarity=0.325 Sum_probs=96.7
Q ss_pred EEEEEcccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhcCCCCCCCEEEecCCCCCCCCCCC
Q 007244 345 FFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPLCGRE 424 (611)
Q Consensus 345 v~i~~GDIt~~~~~~~~~~daIVN~aN~~L~~~ggGVa~aI~~aAG~~l~~e~~~~~~~~~~G~~v~T~l~~~~~~~~~l 424 (611)
|++++|||+++. +|+|||++|..+. ++|||+++|++++|++++++|.+. +.+++|++++|+ .+.|
T Consensus 2 i~i~~GdI~~~~------~DaIVn~~N~~~~-~g~Gva~ai~~~~G~~~~~~~~~~-~~~~~G~~~~t~-------~~~l 66 (133)
T cd03330 2 LEVVQGDITKVD------ADAIVNAANSRLR-MGGGVAGAIKRAGGSVIEREAVRK-APIPVGEAVITG-------AGDL 66 (133)
T ss_pred EEEEEccccccc------CCEEEeCCCCCCC-CCCcHHHHHHHHhCHHHHHHHHHc-CCCCCCeEEEEe-------CCCC
Confidence 789999999997 9999999999999 899999999999999999999886 789999999997 2447
Q ss_pred CccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHH-----HhhccccCCC
Q 007244 425 GVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFL-----SIVRSQEKLS 478 (611)
Q Consensus 425 ~~k~ViH~vgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a~-----siafp~~~~~ 478 (611)
+|++|||+++|.+.. . ...+.|++||+++|+.+. |||||+||.+
T Consensus 67 ~~k~Iih~~~~~~~~-~---------~~~~~l~~~~~~~l~~a~~~~~~sIA~P~igtG 115 (133)
T cd03330 67 PARYVIHAATMEEPG-R---------SSEESVRKATRAALALADELGIESVAFPAMGTG 115 (133)
T ss_pred CCCEEEEeCCCCCCC-C---------CHHHHHHHHHHHHHHHHHHcCCCEEEECccccc
Confidence 889999999998654 2 236799999999999874 9999999944
No 11
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=99.78 E-value=1.9e-18 Score=192.44 Aligned_cols=141 Identities=26% Similarity=0.420 Sum_probs=126.5
Q ss_pred cCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHHHHHHHHHHCCCcEEEecCCCCHHHHHH
Q 007244 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNLEREQRTD 95 (611)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L~~Gk~VIID~tnl~~~~R~~ 95 (611)
...+|.||+|+|+|||||||||++++...+ +.+|++|.+. .+..|...++++|+.|++||||+||..+..|..
T Consensus 365 ~~~~p~LVil~G~pGSGKST~A~~l~~~~g--~~~vn~D~lg-----~~~~~~~~a~~~L~~G~sVVIDaTn~~~~~R~~ 437 (526)
T TIGR01663 365 DDAPCEMVIAVGFPGAGKSHFCKKFFQPAG--YKHVNADTLG-----STQNCLTACERALDQGKRCAIDNTNPDAASRAK 437 (526)
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHHHcC--CeEECcHHHH-----HHHHHHHHHHHHHhCCCcEEEECCCCCHHHHHH
Confidence 357899999999999999999999999876 7889999884 467788999999999999999999999999999
Q ss_pred HHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhccCCCccCCccEEEEcC
Q 007244 96 FVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQ 164 (611)
Q Consensus 96 ~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~e~P~~~EgFd~V~vv~ 164 (611)
|+.+ +.+++.+.+++|++|.++|++|++.|..... ....+++.++.+|.+.|++|...|||..|+.++
T Consensus 438 ~i~lAk~~gv~v~~i~~~~p~e~~~~Rn~~R~~~~~-s~~~vp~~v~~~~~k~fE~Pt~~EGF~~I~~v~ 506 (526)
T TIGR01663 438 FLQCARAAGIPCRCFLFNAPLAQAKHNIAFRELSDS-AHIKIKDMVFNGMKKKFEAPALAEGFIAIHEIN 506 (526)
T ss_pred HHHHHHHcCCeEEEEEeCCCHHHHHHHHHhhccCCc-ccCCCCHHHHHHHHhhCCCCCcccCceEEEEEe
Confidence 9999 9999999999999999999999999976322 123578899999999999999999999998776
No 12
>COG4639 Predicted kinase [General function prediction only]
Probab=99.76 E-value=4.2e-18 Score=159.61 Aligned_cols=138 Identities=27% Similarity=0.345 Sum_probs=116.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccC-------------CCCcHHHHHHHHHHHHHCCCcEEEec
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKG-------------KSGTKVQCLTSASSALKKGKSVFLDR 85 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~-------------~~~~~~~~~~~~~~~L~~Gk~VIID~ 85 (611)
++.|++|+|+|||||||||+..+.. ...++.|+++.. +...|+.+++.++++|++|+..|||+
T Consensus 1 ~~~LvvL~G~~~sGKsT~ak~n~~~----~~~lsld~~r~~lg~~~~~e~sqk~~~~~~~~l~~~l~qrl~~Gk~tiidA 76 (168)
T COG4639 1 MRILVVLRGASGSGKSTFAKENFLQ----NYVLSLDDLRLLLGVSASKENSQKNDELVWDILYKQLEQRLRRGKFTIIDA 76 (168)
T ss_pred CceEEEEecCCCCchhHHHHHhCCC----cceecHHHHHHHhhhchhhhhccccHHHHHHHHHHHHHHHHHcCCeEEEEc
Confidence 5789999999999999999987765 345777777531 11245567789999999999999999
Q ss_pred CCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhccCCCccCCccEEEEcC
Q 007244 86 CNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQ 164 (611)
Q Consensus 86 tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~e~P~~~EgFd~V~vv~ 164 (611)
||+.+++|+.++++ +.+++...+|+||+|.+.|.+|+..|.+ .+|++++.+|.+....+...|+|..+..+.
T Consensus 77 tn~rr~~r~~l~~La~~y~~~~~~ivfdtp~~~c~aRNk~~~R-------qv~~~VI~r~~r~~~~~l~~e~~~~~~~~~ 149 (168)
T COG4639 77 TNLRREDRRKLIDLAKAYGYKIYAIVFDTPLELCLARNKLRER-------QVPEEVIPRMLRETIDLLEKEPFRYVWTLS 149 (168)
T ss_pred ccCCHHHHHHHHHHHHHhCCeEEEEEEeCCHHHHHHHhhccch-------hCCHHHHHHHHHHHHhhccCCCeEEEEecC
Confidence 99999999999999 9999999999999999999999997776 699999999999866677789988777665
Q ss_pred Chh
Q 007244 165 NEN 167 (611)
Q Consensus 165 ~~~ 167 (611)
.++
T Consensus 150 s~e 152 (168)
T COG4639 150 SPE 152 (168)
T ss_pred CHH
Confidence 443
No 13
>smart00506 A1pp Appr-1"-p processing enzyme. Function determined by Martzen et al. Extended family detected by reciprocal PSI-BLAST searches (unpublished results, and Pehrson & Fuji).
Probab=99.75 E-value=1.1e-17 Score=153.68 Aligned_cols=112 Identities=33% Similarity=0.359 Sum_probs=95.4
Q ss_pred EEEEEcccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHH-HHHHHHhc-CCCCCCCEEEecCCCCCCCCC
Q 007244 345 FFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPAL-EVATAERA-KSLYPGNSVIVPLPSTSPLCG 422 (611)
Q Consensus 345 v~i~~GDIt~~~~~~~~~~daIVN~aN~~L~~~ggGVa~aI~~aAG~~l-~~e~~~~~-~~~~~G~~v~T~l~~~~~~~~ 422 (611)
+++++|||+++. +|+|||++|..+. ++||++++|++++|+++ ++++++.. +.+++|++++|+. +
T Consensus 2 i~~~~Gdi~~~~------~d~IV~~~n~~~~-~~~g~a~~i~~~~g~~~~~~~~~~~~~~~~~~G~~~~~~~-------~ 67 (133)
T smart00506 2 LKVVKGDITKPR------ADAIVNAANSDGA-HGGGVAGAIARAAGKALEKEAFRKLAGGECPVGTAVVTEG-------G 67 (133)
T ss_pred eEEEeCCCCccc------CCEEEECCCcccC-CCCcHHHHHHHHhChHHHHHHHHHhcCCCcCCccEEEecC-------C
Confidence 678999999997 9999999999999 89999999999999996 66666553 3689999999982 2
Q ss_pred CCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH-----HHhhccccCCC
Q 007244 423 REGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEKLS 478 (611)
Q Consensus 423 ~l~~k~ViH~vgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a-----~siafp~~~~~ 478 (611)
.+++++|||+++|+|.... ..+.+.|++||++||+.+ .|||||.||.+
T Consensus 68 ~~~~~~Iih~~~p~~~~~~--------~~~~~~l~~~~~~~l~~~~~~~~~sIa~P~igtG 120 (133)
T smart00506 68 NLPAKYVIHAVGPRASGHS--------NEGFELLENAYRNCLELAIELGITSVAIPLIGTG 120 (133)
T ss_pred CCCCCEEEEeCCCCCCCCC--------ccHHHHHHHHHHHHHHHHHHcCCCEEEECCccCC
Confidence 3678999999999997642 245799999999999886 49999999944
No 14
>cd02749 Macro Macro domain, a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes.
Probab=99.74 E-value=1.5e-17 Score=155.72 Aligned_cols=113 Identities=32% Similarity=0.391 Sum_probs=96.7
Q ss_pred EEEEEcccce-ecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhcC--CCCCCCEEEecCCCCCCCC
Q 007244 345 FFTFVGDITR-LYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAK--SLYPGNSVIVPLPSTSPLC 421 (611)
Q Consensus 345 v~i~~GDIt~-~~~~~~~~~daIVN~aN~~L~~~ggGVa~aI~~aAG~~l~~e~~~~~~--~~~~G~~v~T~l~~~~~~~ 421 (611)
|.+++|||++ .. +|+|||++|..+. ++||++++|++++|+++++++++... .+++|++++|+ .+
T Consensus 2 i~~~~GDi~~~~~------~d~IVn~~n~~~~-~g~gi~~ai~~~~g~~~~~~~~~~~~~~~~~~G~~~~t~------~~ 68 (147)
T cd02749 2 IKVVSGDITKPLG------SDAIVNAANSSGR-DGGGVNLAISKKAGKELEEESKKLRKELELQVGEAVLTK------GY 68 (147)
T ss_pred EEEEECCCCCCCC------CCEEEeCCCCCCC-CCChHHHHHHHHhCHHHHHHHHHHhcccCCCCCCEEECc------CC
Confidence 6789999999 76 9999999999999 89999999999999999999998743 25899999998 22
Q ss_pred CCCC-ccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH-----HHhhccccCCC
Q 007244 422 GREG-VTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEKLS 478 (611)
Q Consensus 422 ~~l~-~k~ViH~vgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a-----~siafp~~~~~ 478 (611)
.++ +++|||+++|.|....+ ..+.++|++||++||..+ .|||||.||.+
T Consensus 69 -~~~~~~~vih~~~p~~~~~~~-------~~~~~~l~~a~~~~L~~~~~~~~~sIa~P~igtG 123 (147)
T cd02749 69 -NLDGAKYLIHIVGPKYNQGNN-------KAAFELLKNAYENCLKEAEEKGIKSIAFPLIGTG 123 (147)
T ss_pred -CCCcCCEEEEeCCCCCCCCCC-------chHHHHHHHHHHHHHHHHHHcCCCEEEECCcccc
Confidence 344 89999999999987532 245789999999999875 47999999943
No 15
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=99.73 E-value=2e-17 Score=152.99 Aligned_cols=127 Identities=31% Similarity=0.417 Sum_probs=100.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccC----C----CC-------cHHHHHHHHHHHHHCCCcEEEecC
Q 007244 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKG----K----SG-------TKVQCLTSASSALKKGKSVFLDRC 86 (611)
Q Consensus 22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~----~----~~-------~~~~~~~~~~~~L~~Gk~VIID~t 86 (611)
||+|+|+|||||||||+.+++.++ +.+|+.|.++.. . .. .+..+...+..++..|.++|||.|
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~--~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~vvd~~ 78 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG--AVVISQDEIRRRLAGEDPPSPSDYIEAEERAYQILNAAIRKALRNGNSVVVDNT 78 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST--EEEEEHHHHHHHHCCSSSGCCCCCHHHHHHHHHHHHHHHHHHHHTT-EEEEESS
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC--CEEEeHHHHHHHHcccccccchhHHHHHHHHHHHHHHHHHHHHHcCCCceeccC
Confidence 799999999999999999999988 788999988521 1 11 111234677888999999999999
Q ss_pred CCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhccCC
Q 007244 87 NLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELP 151 (611)
Q Consensus 87 nl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~e~P 151 (611)
++....|..|..+ +..++.+.+|+|++|.+++.+|+..|..+.+ ....++.+.+++|++.|+.|
T Consensus 79 ~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R~~~~~-~~~~~~~~~~~~~~~~~e~p 143 (143)
T PF13671_consen 79 NLSREERARLRELARKHGYPVRVVYLDAPEETLRERLAQRNREGD-KRFEVPEEVFDRMLARFEPP 143 (143)
T ss_dssp --SHHHHHHHHHHHHHCTEEEEEEEECHHHHHHHHHHHTTHCCCT-TS----HHHHHHHHHHHH--
T ss_pred cCCHHHHHHHHHHHHHcCCeEEEEEEECCHHHHHHHHHhcCCccc-ccccCcHHHHHHHHHhhccC
Confidence 9999999999999 8999999999999999999999999998643 23358999999999999887
No 16
>cd02900 Macro_Appr_pase Macro domain, Appr-1"-pase family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. The yeast protein Ymx7 and related proteins in this family contain a stand-alone macro domain and may be specific phosphatases catalyzing the conversion of ADP-ribose-1"-monophosphate (Appr-1"-p) to ADP-ribose. Appr-1"-p is an intermediate in a metabolic pathway involved in pre-tRNA splicing.
Probab=99.68 E-value=1.4e-16 Score=155.71 Aligned_cols=128 Identities=20% Similarity=0.134 Sum_probs=93.4
Q ss_pred eEEEEEEcccceecc----cCcccccEEEeCCCCCCcCCCChhhHHHHHhhc-HHHHHHHHHh-----cCCCCCCCEEEe
Q 007244 343 KKFFTFVGDITRLYT----GGGLCCNVIANAANWRLKPGGGGVNAAIFSAAG-PALEVATAER-----AKSLYPGNSVIV 412 (611)
Q Consensus 343 ~~v~i~~GDIt~~~~----~~~~~~daIVN~aN~~L~~~ggGVa~aI~~aAG-~~l~~e~~~~-----~~~~~~G~~v~T 412 (611)
..+.++.|+++++.. .....+|+||||||+.+. +||||+.||++++| ++|+++|++. .+.+++|++++|
T Consensus 19 ~~v~~~~~~~~~i~~~~~~~~~~~~DaIVnpANs~~~-mgGGvD~AI~~~~G~~~le~~~q~~~~~~~~g~lpvG~a~it 97 (186)
T cd02900 19 KYVCIVNGGLETIEDSVRKLHHGHFDSIVSPANSYGY-LDGGFDLAIRNFFGGKPLETWVQNQLLRKYLGYLPVGSATVV 97 (186)
T ss_pred CCeEEEeCCceecchhhcccccCccCEEEeCCCcccC-CCCcHHHHHHHHcChHHHHHHHHHHHHHhcCCCCCCCcEEEe
Confidence 346666666665531 011228999999999999 99999999999999 6999999764 378999999999
Q ss_pred cCCC---CCCCCCCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH-------HHhhccccCCCC
Q 007244 413 PLPS---TSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-------LSIVRSQEKLSK 479 (611)
Q Consensus 413 ~l~~---~~~~~~~l~~k~ViH~vgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a-------~siafp~~~~~~ 479 (611)
+... .-..+++.+++||||++++.+..... ...+.|+.||+++|..+ .|||||+||-+.
T Consensus 98 ~~~~l~~~~~~~~~~~~~~iIHaPtm~~P~~~~--------~~~~~l~~a~~~~L~~a~~~~~~i~sIa~P~igTGv 166 (186)
T cd02900 98 PLGRALLEKTIYCRWGIPYLIHAPTMRVPSPVI--------TGTEPVFDAMWNALNAIPKENQEINTLVLPGLGTGY 166 (186)
T ss_pred cCCCCccccccccccCCCEEEEcCcccCCCCCC--------CcHHHHHHHHHHHHHHHHhccCCCCEEEECchhcCC
Confidence 9221 00013444599999998765531111 23579999999999875 489999999543
No 17
>PF01661 Macro: Macro domain; InterPro: IPR002589 The Macro or A1pp domain is a module of about 180 amino acids which can bind ADP-ribose, an NAD metabolite or related ligands. Binding to ADP-ribose could be either covalent or non-covalent []: in certain cases it is believed to bind non-covalently []; while in other cases (such as Aprataxin) it appears to bind both non-covalently through a zinc finger motif, and covalently through a separate region of the protein []. The domain was described originally in association with ADP-ribose 1''-phosphate (Appr-1''-P) processing activity (A1pp) of the yeast YBR022W protein []. The domain is also called Macro domain as it is the C-terminal domain of mammalian core histone macro-H2A [, ]. Macro domain proteins can be found in eukaryotes, in (mostly pathogenic) bacteria, in archaea and in ssRNA viruses, such as coronaviruses, Rubella and Hepatitis E viruses. In vertebrates the domain occurs e.g. in histone macroH2A, in predicted poly-ADP-ribose polymerases (PARPs) and in B aggressive lymphoma (BAL) protein. The macro domain can be associated with catalytic domains, such as PARP, or sirtuin. The Macro domain can recognise ADP-ribose or in some cases poly-ADP-ribose, which can be involved in ADP-ribosylation reactions that occur in important processes, such as chromatin biology, DNA repair and transcription regulation []. The human macroH2A1.1 Macro domain binds an NAD metabolite O-acetyl-ADP-ribose []. The Macro domain has been suggested to play a regulatory role in ADP-ribosylation, which is involved in inter- and intracellular signaling, transcriptional regulation, DNA repair pathways and maintenance of genomic stability, telomere dynamics, cell differentiation and proliferation, and necrosis and apoptosis. The 3D structure of the Macro domain has a mixed alpha/beta fold of a mixed beta sheet sandwiched between four helices. Several Macro domain only domains are shorter than the structure of AF1521 and lack either the first strand or the C-terminal helix 5. Well conserved residues form a hydrophobic cleft and cluster around the AF1521-ADP-ribose binding site [, , , ]. ; PDB: 2DX6_A 2XD7_D 3Q71_A 2FAV_B 1SPV_A 3EKE_A 3EJF_A 1YD9_B 3GPG_B 3GPQ_A ....
Probab=99.64 E-value=2.9e-16 Score=141.05 Aligned_cols=97 Identities=35% Similarity=0.451 Sum_probs=84.1
Q ss_pred EeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhc---CCCCCCCEEEecCCCCCCCCCCCCccEEEEecCCCCCCCCCC
Q 007244 367 ANAANWRLKPGGGGVNAAIFSAAGPALEVATAERA---KSLYPGNSVIVPLPSTSPLCGREGVTHVIHVLGPNMNPRRPN 443 (611)
Q Consensus 367 VN~aN~~L~~~ggGVa~aI~~aAG~~l~~e~~~~~---~~~~~G~~v~T~l~~~~~~~~~l~~k~ViH~vgP~~~~~~~~ 443 (611)
||+||.+|. ++|||+++|++++|++++++|++.. +.+++|++++|+ .+.+++++|||+|||.|.....
T Consensus 1 Vn~~N~~~~-~g~Gva~ai~~~~g~~~~~~~~~~~~~~~~~~~G~~~~t~-------~~~l~~~~Iih~v~P~~~~~~~- 71 (118)
T PF01661_consen 1 VNAANCFLS-MGGGVAKAIFKAAGPALQEECKEIKKKGGELPVGEVIVTP-------GGNLPCKYIIHAVGPTYNSPGE- 71 (118)
T ss_dssp EEEEETTSS-BSSHHHHHHHHHHTHHHHHHHHHHHHHHHSSSTTSEEEEE-------ETTSSSSEEEEEEEEETTTSTS-
T ss_pred CcCCCCCCC-CCchHHHHHHHhchHHHHHHHHHhhcccCcccCCCeeeec-------CCCccccceEEEecceeccccc-
Confidence 899999999 8999999999999999999998763 669999999998 2346789999999999975422
Q ss_pred CCCCCchhhHHHHHHHHHHHHHHH-----HHhhccccCCC
Q 007244 444 CLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEKLS 478 (611)
Q Consensus 444 ~~~~~~~~~~~~L~~ay~~~L~~a-----~siafp~~~~~ 478 (611)
....+.|++||+++|+.+ .||+||+||.+
T Consensus 72 ------~~~~~~L~~~~~~~l~~a~~~~~~sIa~P~ig~G 105 (118)
T PF01661_consen 72 ------KNSYEALESAYRNALQKAEENGIKSIAFPAIGTG 105 (118)
T ss_dssp ------TTHHHHHHHHHHHHHHHHHHTTTSEEEEESTTSS
T ss_pred ------cccHHHHHHHHHHHHHHHHHcCCcccccCcccCC
Confidence 256899999999999986 49999999944
No 18
>PRK06762 hypothetical protein; Provisional
Probab=99.64 E-value=5.8e-15 Score=140.84 Aligned_cols=147 Identities=14% Similarity=0.116 Sum_probs=110.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCC--------CcHHHHHHHHHHHHHCCCcEEEecCCCCH
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKS--------GTKVQCLTSASSALKKGKSVFLDRCNLER 90 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~--------~~~~~~~~~~~~~L~~Gk~VIID~tnl~~ 90 (611)
||.+|+|+|+|||||||+|+.|.+.++..+.+++.|.++.... .....+...++..+..|..||+|+++...
T Consensus 1 m~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~vild~~~~~~ 80 (166)
T PRK06762 1 MTTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRRDMLRVKDGPGNLSIDLIEQLVRYGLGHCEFVILEGILNSD 80 (166)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHHHhccccCCCCCcCHHHHHHHHHHHHhCCCEEEEchhhccH
Confidence 6899999999999999999999999865577889888864211 12233445556668889999999987777
Q ss_pred HHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhccCCCccCCccEEEEcCChhhH
Q 007244 91 EQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQNENDV 169 (611)
Q Consensus 91 ~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~e~P~~~EgFd~V~vv~~~~ev 169 (611)
..|..+..+ ...+.++.+|+|++|.++|.+|+.+|.... ..+++.+++++..++.+.. ++.+++. +...+
T Consensus 81 ~~~~~~~~l~~~~~~~~~~v~Ldap~e~~~~R~~~R~~~~-----~~~~~~l~~~~~~~~~~~~---~~~~~~~-~~~~~ 151 (166)
T PRK06762 81 RYGPMLKELIHLFRGNAYTYYFDLSFEETLRRHSTRPKSH-----EFGEDDMRRWWNPHDTLGV---IGETIFT-DNLSL 151 (166)
T ss_pred hHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHhcccccc-----cCCHHHHHHHHhhcCCcCC---CCeEEec-CCCCH
Confidence 777777777 777778899999999999999999997621 4678999999988876642 3444434 44555
Q ss_pred HHHHH
Q 007244 170 QAALD 174 (611)
Q Consensus 170 d~av~ 174 (611)
.+++.
T Consensus 152 ~~v~~ 156 (166)
T PRK06762 152 KDIFD 156 (166)
T ss_pred HHHHH
Confidence 55554
No 19
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.60 E-value=6.8e-15 Score=153.40 Aligned_cols=126 Identities=28% Similarity=0.398 Sum_probs=103.1
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCC---------c--H-----HHHHHHHHHHHHCCCcEE
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG---------T--K-----VQCLTSASSALKKGKSVF 82 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~---------~--~-----~~~~~~~~~~L~~Gk~VI 82 (611)
|+.+|+|+|+|||||||+|++|++.++ .+.+++.|.++..... . . ......+..++..|..||
T Consensus 1 m~~liil~G~pGSGKSTla~~L~~~~~-~~~~l~~D~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~vI 79 (300)
T PHA02530 1 MMKIILTVGVPGSGKSTWAREFAAKNP-KAVNVNRDDLRQSLFGHGEWGEYKFTKEKEDLVTKAQEAAALAALKSGKSVI 79 (300)
T ss_pred CcEEEEEEcCCCCCHHHHHHHHHHHCC-CCEEEeccHHHHHhcCCCcccccccChHHHHHHHHHHHHHHHHHHHcCCeEE
Confidence 578999999999999999999999983 3678999888532110 0 0 112255667788899999
Q ss_pred EecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhccCC
Q 007244 83 LDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELP 151 (611)
Q Consensus 83 ID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~e~P 151 (611)
||++++...+|..+..+ +..++.+.+|+|++|.+++.+|+.+|..| .+|.+++.+|+++++.+
T Consensus 80 id~~~~~~~~~~~~~~la~~~~~~~~~v~l~~~~e~~~~R~~~R~~~------~~~~~~i~~~~~~~~~~ 143 (300)
T PHA02530 80 ISDTNLNPERRRKWKELAKELGAEFEEKVFDVPVEELVKRNRKRGER------AVPEDVLRSMFKQMKEY 143 (300)
T ss_pred EeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHccCcC------CCCHHHHHHHHHHHHHh
Confidence 99999999999999998 88888888999999999999999999665 57899999988887644
No 20
>KOG2633 consensus Hismacro and SEC14 domain-containing proteins [Chromatin structure and dynamics; Transcription]
Probab=99.59 E-value=2.1e-15 Score=147.03 Aligned_cols=106 Identities=26% Similarity=0.327 Sum_probs=91.7
Q ss_pred CeEEEEEEcccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhcCCCCCCCEEEecCCCCCCCC
Q 007244 342 PKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPLC 421 (611)
Q Consensus 342 ~~~v~i~~GDIt~~~~~~~~~~daIVN~aN~~L~~~ggGVa~aI~~aAG~~l~~e~~~~~~~~~~G~~v~T~l~~~~~~~ 421 (611)
+-.+.+|+||++.+. +|+|| |. +|||+..+|+++|||++..||..+ ..|++|.+.+|. +
T Consensus 32 ~~~i~lwr~d~~~l~------v~avv------l~-~g~~~~~ai~~aagp~l~~e~~~~-~~c~tG~ak~t~-------~ 90 (200)
T KOG2633|consen 32 NGGISLWRGDGKTLE------VDAVV------LL-GGKGVDEAIHRAAGPELPLECAYL-HGCRTGAAKSTG-------G 90 (200)
T ss_pred ccCeeEeeccccccc------ceeee------ec-cCcchhHHHHHhcCCcchHHHHhh-cCCCCCeeEecC-------C
Confidence 356889999999998 99999 66 899999999999999999999998 459999999998 2
Q ss_pred CCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH-----HHhhccccC
Q 007244 422 GREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEK 476 (611)
Q Consensus 422 ~~l~~k~ViH~vgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a-----~siafp~~~ 476 (611)
..|++++|||+|||.|...+. +.+..|+.||+|||.+| .+||||||+
T Consensus 91 ~~Lpak~vIHtvgP~~~~d~~--------~~~~~L~~~~rs~L~la~~~~ls~iAf~~I~ 142 (200)
T KOG2633|consen 91 YGLPAKRVIHTVGPRWKEDKL--------QECYFLHSCYRSCLDLAIEKLLSSIAFPKIS 142 (200)
T ss_pred CCCceeEEEEecCchhhccch--------HHHHHHHHHHHHHHHHHHHhccceeeeeeee
Confidence 347889999999999976532 33347999999999986 479999999
No 21
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=99.58 E-value=1.2e-14 Score=142.08 Aligned_cols=132 Identities=22% Similarity=0.273 Sum_probs=101.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcC---CCeEEeecchh---ccCCCC-cHHHH---------HHHHHHHHHCCCcEEEec
Q 007244 22 LVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTI---NKGKSG-TKVQC---------LTSASSALKKGKSVFLDR 85 (611)
Q Consensus 22 LIvLvG~PGSGKST~A~~L~~~~~---~~~~~Is~D~i---~~~~~~-~~~~~---------~~~~~~~L~~Gk~VIID~ 85 (611)
||+|+|+|||||||||+.|++.+. ....+++.|.. ..++.. .+.+. ...+..+++ +.-||+|.
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~~i~~DEslpi~ke~yres~~ks~~rlldSalk-n~~VIvDd 81 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLRGILWDESLPILKEVYRESFLKSVERLLDSALK-NYLVIVDD 81 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhhhheecccccchHHHHHHHHHHHHHHHHHHHHhc-ceEEEEec
Confidence 799999999999999999998765 22334444332 222222 22211 133333443 56799999
Q ss_pred CCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhccCCCccCCccEEE
Q 007244 86 CNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRIT 161 (611)
Q Consensus 86 tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~e~P~~~EgFd~V~ 161 (611)
+|+...+|..+... +.......+|++.+|.++|++|+..|+. ..|++++++++.+|++|...-.||.-.
T Consensus 82 tNYyksmRrqL~ceak~~~tt~ciIyl~~plDtc~rrN~erge-------pip~Evl~qly~RfEePn~~~rWDspl 151 (261)
T COG4088 82 TNYYKSMRRQLACEAKERKTTWCIIYLRTPLDTCLRRNRERGE-------PIPEEVLRQLYDRFEEPNPDRRWDSPL 151 (261)
T ss_pred ccHHHHHHHHHHHHHHhcCCceEEEEEccCHHHHHHhhccCCC-------CCCHHHHHHHHHhhcCCCCCccccCce
Confidence 99999999999999 8888888999999999999999988776 589999999999999999988888633
No 22
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=99.57 E-value=2.8e-14 Score=145.52 Aligned_cols=130 Identities=24% Similarity=0.332 Sum_probs=104.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcC---CCeEEeecchhccCC---CCc-----HHHHHHHHHHHHHCCCcEEEecCCCCH
Q 007244 22 LVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINKGK---SGT-----KVQCLTSASSALKKGKSVFLDRCNLER 90 (611)
Q Consensus 22 LIvLvG~PGSGKST~A~~L~~~~~---~~~~~Is~D~i~~~~---~~~-----~~~~~~~~~~~L~~Gk~VIID~tnl~~ 90 (611)
||+|+|+|||||||+|++|++.+. ..+.+++.|.++... ... +......+..++..|..||+|++++..
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr~~~~~~~~~~e~~~~~~~~~~i~~~l~~~~~VI~D~~~~~~ 80 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIRESFPVWKEKYEEFIRDSTLYLIKTALKNKYSVIVDDTNYYN 80 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHHHHhHHhhHHhHHHHHHHHHHHHHHHHhCCCeEEEeccchHH
Confidence 689999999999999999998763 446677877774321 111 112235677888899999999999999
Q ss_pred HHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhccCCCccCCcc
Q 007244 91 EQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFS 158 (611)
Q Consensus 91 ~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~e~P~~~EgFd 158 (611)
..|..+..+ +..+....+|++++|.++|.+|+..|.. ..+++++.++...+++|.....|+
T Consensus 81 ~~r~~l~~~ak~~~~~~~~I~l~~p~e~~~~Rn~~R~~-------~~~~~~i~~l~~r~e~p~~~~~wd 142 (249)
T TIGR03574 81 SMRRDLINIAKEYNKNYIIIYLKAPLDTLLRRNIERGE-------KIPNEVIKDMYEKFDEPGTKYSWD 142 (249)
T ss_pred HHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHHhCCC-------CCCHHHHHHHHHhhCCCCCCCCcc
Confidence 999999888 8888888899999999999999998864 367889999999999998765544
No 23
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.57 E-value=2.8e-16 Score=181.53 Aligned_cols=121 Identities=20% Similarity=0.122 Sum_probs=100.9
Q ss_pred cCCeEEEEEE----cccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHH---HHHHHHh------------
Q 007244 340 INPKKFFTFV----GDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPAL---EVATAER------------ 400 (611)
Q Consensus 340 ~~~~~v~i~~----GDIt~~~~~~~~~~daIVN~aN~~L~~~ggGVa~aI~~aAG~~l---~~e~~~~------------ 400 (611)
.++.++.+++ ||||.+. +|+|||+||..|. +||||.+||+++||+.+ +++|+++
T Consensus 472 ~~~~~~~~~~~~~~~dit~~~------~d~ivnaan~~ll-~~~g~~~ai~~~~g~~~~~~~~~~~~~~~~~~~l~~~~r 544 (725)
T PRK13341 472 QEGERLAILRDRLWSDITWQR------HDRVLNLANRSLL-WALGPLRAVPEGGVTVLCSSQEDSDRLVAQLELLDPLER 544 (725)
T ss_pred hcccHHHHHHHHHhccccccc------cceeEEccCccch-hhhhHHHhccCCCeEEecCCHHHHHHHHHHHhhcchhhC
Confidence 4578899999 9999997 9999999999999 89999999999999999 8888752
Q ss_pred -----------------------cCCCCCCCEEEec-----CCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCCchhh
Q 007244 401 -----------------------AKSLYPGNSVIVP-----LPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKG 452 (611)
Q Consensus 401 -----------------------~~~~~~G~~v~T~-----l~~~~~~~~~l~~k~ViH~vgP~~~~~~~~~~~~~~~~~ 452 (611)
.|++++|++++|. |-.-.+..++|.+++|||+|||.|....+
T Consensus 545 p~~~~~~~~~~~~l~~~~~f~~~~g~~~~g~a~~T~~~~~~l~~~~~~~g~L~~~~vIh~vGp~~~~~~~---------- 614 (725)
T PRK13341 545 PVLLDGSLEALKTLPANLQFEWIGGRLPTGDAVVTKELWQQLTEKLTPAGKLKLLYSIPAVGPAWALLSE---------- 614 (725)
T ss_pred ccccccchhhhhhcCcccceeeeeccCcccchhhHHHHHHHHHHhcCCCCeeEEEEeccccChHhhhcCc----------
Confidence 4889999999991 10011124568999999999999977532
Q ss_pred HHHHHHHHHHHHHHH-----H----------HhhccccCC
Q 007244 453 CEILRKAYTSLFEGF-----L----------SIVRSQEKL 477 (611)
Q Consensus 453 ~~~L~~ay~~~L~~a-----~----------siafp~~~~ 477 (611)
.+.|.+||+++|..| . |||||+|+-
T Consensus 615 ~~~l~~~~~~~L~~Aee~~~~~~~~~~~~~~sia~p~ist 654 (725)
T PRK13341 615 DELLYKALYSALLEAEELWLKLQWDQSLLQQSLEMPGWST 654 (725)
T ss_pred cchhHHHHHHHHHHHHHHhcccccchhHHHHHHHhcCCcc
Confidence 468999999999974 5 999999983
No 24
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=99.52 E-value=5.1e-14 Score=145.68 Aligned_cols=133 Identities=23% Similarity=0.346 Sum_probs=93.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcC---CCeEEeecchhc--cCCCC-------cHHHHHHHHHHHHHCCCcEEEecCCCC
Q 007244 22 LVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTIN--KGKSG-------TKVQCLTSASSALKKGKSVFLDRCNLE 89 (611)
Q Consensus 22 LIvLvG~PGSGKST~A~~L~~~~~---~~~~~Is~D~i~--~~~~~-------~~~~~~~~~~~~L~~Gk~VIID~tnl~ 89 (611)
||+|+|.|||||||+|++|.+.+. ....+++.|.+. ...+. .+..+...+.+.|.....||+|+.|+.
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~ls~~~iVI~Dd~nYi 82 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERALSKDTIVILDDNNYI 82 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHHTT-SEEEE-S---S
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhhccCeEEEEeCCchH
Confidence 899999999999999999987543 446677766664 11111 123455788899999999999999999
Q ss_pred HHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhccCCCccCCccE
Q 007244 90 REQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSR 159 (611)
Q Consensus 90 ~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~e~P~~~EgFd~ 159 (611)
+.+|-++..+ +..+....+|++++|.+.|++|+.+|.... .++++++.+|..+||+|.....||.
T Consensus 83 Kg~RYelyclAr~~~~~~c~i~~~~~~e~~~~~N~~R~~~~-----~~~~e~i~~m~~RfE~P~~~nrWD~ 148 (270)
T PF08433_consen 83 KGMRYELYCLARAYGTTFCVIYCDCPLETCLQRNSKRPEPE-----RYPEETIDDMIQRFEEPDPKNRWDS 148 (270)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHHHHHTT-S-------S-HHHHHHHHHH---TTSS-GGGS
T ss_pred HHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHhhhccCCCC-----CCCHHHHHHHHHHhcCCCCCCCccC
Confidence 9999999999 999999999999999999999999998732 4899999999999999998767774
No 25
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=99.51 E-value=7.5e-14 Score=135.19 Aligned_cols=142 Identities=18% Similarity=0.250 Sum_probs=109.4
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEee--------------------cchh----ccCCCCcHHHHH------
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARIC--------------------QDTI----NKGKSGTKVQCL------ 68 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is--------------------~D~i----~~~~~~~~~~~~------ 68 (611)
++.|++|+||+|+||||+.++|.+..+ ....|| .+.+ .++.+.+|.++.
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~~-l~~SVS~TTR~pR~gEv~G~dY~Fvs~~EF~~~i~~~~fLE~a~~~gnyYGT 81 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDDK-LRFSVSATTRKPRPGEVDGVDYFFVTEEEFEELIERDEFLEWAEYHGNYYGT 81 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhcC-eEEEEEeccCCCCCCCcCCceeEeCCHHHHHHHHhcCCcEEEEEEcCCcccC
Confidence 678999999999999999999999873 333344 1222 244555554322
Q ss_pred --HHHHHHHHCCCcEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHH
Q 007244 69 --TSASSALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRML 145 (611)
Q Consensus 69 --~~~~~~L~~Gk~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~ 145 (611)
..++..+..|++||+|. +.++.+.+ +..+..+.++.++++.+++.+|+..|++ +..+.+-+||.
T Consensus 82 ~~~~ve~~~~~G~~vildI------d~qGa~qvk~~~p~~v~IFi~pPs~eeL~~RL~~Rgt-------ds~e~I~~Rl~ 148 (191)
T COG0194 82 SREPVEQALAEGKDVILDI------DVQGALQVKKKMPNAVSIFILPPSLEELERRLKGRGT-------DSEEVIARRLE 148 (191)
T ss_pred cHHHHHHHHhcCCeEEEEE------ehHHHHHHHHhCCCeEEEEEcCCCHHHHHHHHHccCC-------CCHHHHHHHHH
Confidence 77889999999999999 88888888 7777666677778888999999999988 67888889999
Q ss_pred hhccCCCccCCccEEEEcCChhhHHHHHHHhc
Q 007244 146 QKKELPKLSEGFSRITLCQNENDVQAALDTYS 177 (611)
Q Consensus 146 ~~~e~P~~~EgFd~V~vv~~~~evd~av~~~~ 177 (611)
+...+......||+|++++ +++.+...+.
T Consensus 149 ~a~~Ei~~~~~fdyvivNd---d~e~a~~~l~ 177 (191)
T COG0194 149 NAKKEISHADEFDYVIVND---DLEKALEELK 177 (191)
T ss_pred HHHHHHHHHHhCCEEEECc---cHHHHHHHHH
Confidence 9887777777799999995 4445554433
No 26
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=99.50 E-value=5e-13 Score=125.28 Aligned_cols=126 Identities=21% Similarity=0.217 Sum_probs=95.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccC---------CCCc---HHH----HHHHHHHHH-HCCCcEEEe
Q 007244 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKG---------KSGT---KVQ----CLTSASSAL-KKGKSVFLD 84 (611)
Q Consensus 22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~---------~~~~---~~~----~~~~~~~~L-~~Gk~VIID 84 (611)
||+|+|+|||||||+|+.+.+.++ +.+++.|.++.. .... ... ....+...+ ..|..+|+|
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~~--~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~vVid 78 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERLG--APFIDGDDLHPPANIAKMAAGIPLNDEDRWPWLQALTDALLAKLASAGEGVVVA 78 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhcC--CEEEeCcccccHHHHHHHHcCCCCCccchhhHHHHHHHHHHHHHHhCCCCEEEE
Confidence 589999999999999999999887 456888887642 1101 111 112223333 478899999
Q ss_pred cCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhccCCCccCC
Q 007244 85 RCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEG 156 (611)
Q Consensus 85 ~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~e~P~~~Eg 156 (611)
.+++....|..+..+. ++..+.+|++++|.+++.+|+..|..+ ..+.+.+..+.+.|+.|...++
T Consensus 79 ~~~~~~~~r~~~~~~~-~~~~~~~v~l~~~~~~~~~R~~~R~~~------~~~~~~~~~~~~~~~~p~~~~~ 143 (150)
T cd02021 79 CSALKRIYRDILRGGA-ANPRVRFVHLDGPREVLAERLAARKGH------FMPADLLDSQFETLEPPGEDEE 143 (150)
T ss_pred eccccHHHHHHHHhcC-CCCCEEEEEEECCHHHHHHHHHhcccC------CCCHHHHHHHHHHhcCCCCCCC
Confidence 9998888887776553 466788999999999999999999764 3558889999999999997664
No 27
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=99.49 E-value=4.4e-13 Score=127.49 Aligned_cols=140 Identities=19% Similarity=0.208 Sum_probs=101.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhcc---------CC-CC-----cH-HHHHHHHHHHHHCCCcEEEecC
Q 007244 23 VIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK---------GK-SG-----TK-VQCLTSASSALKKGKSVFLDRC 86 (611)
Q Consensus 23 IvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~---------~~-~~-----~~-~~~~~~~~~~L~~Gk~VIID~t 86 (611)
|+|+|+|||||||+|+.|.+.++ ...++.|.+.. +. .. .+ ..+...+...+..|..+|||.+
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~--~~~v~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Vi~~t 78 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLG--AKFIEGDDLHPAANIEKMSAGIPLNDDDRWPWLQNLNDASTAAAAKNKVGIITCS 78 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcC--CeEEeCccccChHHHHHHHcCCCCChhhHHHHHHHHHHHHHHHHhcCCCEEEEec
Confidence 57999999999999999999988 45588888632 11 01 11 1233566677788888899999
Q ss_pred CCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhccCCCccCCccEEEEcCCh
Q 007244 87 NLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQNE 166 (611)
Q Consensus 87 nl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~e~P~~~EgFd~V~vv~~~ 166 (611)
++.+..|..+ +..+..+.+++|++|.+++.+|+..|..+ ..+.+.+++++..++.|...|. ++++++..
T Consensus 79 ~~~~~~r~~~---~~~~~~~~~i~l~~~~e~~~~R~~~R~~~------~~~~~~i~~~~~~~~~~~~~e~--~~~~id~~ 147 (163)
T TIGR01313 79 ALKRHYRDIL---REAEPNLHFIYLSGDKDVILERMKARKGH------FMKADMLESQFAALEEPLADET--DVLRVDID 147 (163)
T ss_pred ccHHHHHHHH---HhcCCCEEEEEEeCCHHHHHHHHHhccCC------CCCHHHHHHHHHHhCCCCCCCC--ceEEEECC
Confidence 8877766655 45566778899999999999999999753 2456778888888888876663 35666655
Q ss_pred hhHHHHHHH
Q 007244 167 NDVQAALDT 175 (611)
Q Consensus 167 ~evd~av~~ 175 (611)
...+++..+
T Consensus 148 ~~~~~~~~~ 156 (163)
T TIGR01313 148 QPLEGVEED 156 (163)
T ss_pred CCHHHHHHH
Confidence 555555443
No 28
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=99.46 E-value=1.6e-12 Score=122.01 Aligned_cols=133 Identities=20% Similarity=0.236 Sum_probs=108.5
Q ss_pred cCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhc---------------cCCCCcHHH-HHHHHHHHHHCCC
Q 007244 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN---------------KGKSGTKVQ-CLTSASSALKKGK 79 (611)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~---------------~~~~~~~~~-~~~~~~~~L~~Gk 79 (611)
-.+.+-+|+++|++||||||+++.|.++++..| ++.|++. ++.+..|-. +...++.++..|.
T Consensus 8 ~~~~k~~i~vmGvsGsGKSTigk~L~~~l~~~F--~dgDd~Hp~~NveKM~~GipLnD~DR~pWL~~i~~~~~~~l~~~q 85 (191)
T KOG3354|consen 8 MGPFKYVIVVMGVSGSGKSTIGKALSEELGLKF--IDGDDLHPPANVEKMTQGIPLNDDDRWPWLKKIAVELRKALASGQ 85 (191)
T ss_pred cCCCceeEEEEecCCCChhhHHHHHHHHhCCcc--cccccCCCHHHHHHHhcCCCCCcccccHHHHHHHHHHHHHhhcCC
Confidence 345567999999999999999999999999555 8888883 223445544 5577788888999
Q ss_pred cEEEecCCCCHHHHHHHHHh-C-----CCC-CeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhccCCC
Q 007244 80 SVFLDRCNLEREQRTDFVKL-G-----GPE-VDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPK 152 (611)
Q Consensus 80 ~VIID~tnl~~~~R~~~~~l-~-----~~~-~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~e~P~ 152 (611)
.||+-+..+.+..|.-++.- + ... ..+++|++..+.+++..|+.+|..| .+|.++++++.+.+|.|.
T Consensus 86 ~vVlACSaLKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~s~evi~~Rl~~R~gH------FMp~~lleSQf~~LE~p~ 159 (191)
T KOG3354|consen 86 GVVLACSALKKKYRDILRHSLKDGKPGKCPESQLHFILLSASFEVILKRLKKRKGH------FMPADLLESQFATLEAPD 159 (191)
T ss_pred eEEEEhHHHHHHHHHHHHhhcccCCccCCccceEEEeeeeccHHHHHHHHhhcccc------cCCHHHHHHHHHhccCCC
Confidence 99999988888777766653 2 222 4689999999999999999999998 799999999999999999
Q ss_pred ccCC
Q 007244 153 LSEG 156 (611)
Q Consensus 153 ~~Eg 156 (611)
..|.
T Consensus 160 ~~e~ 163 (191)
T KOG3354|consen 160 ADEE 163 (191)
T ss_pred CCcc
Confidence 8663
No 29
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=99.41 E-value=5.7e-12 Score=121.80 Aligned_cols=106 Identities=19% Similarity=0.298 Sum_probs=80.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCC----------------CC---------cHHHHHHHHHHH
Q 007244 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGK----------------SG---------TKVQCLTSASSA 74 (611)
Q Consensus 20 p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~----------------~~---------~~~~~~~~~~~~ 74 (611)
..+|+|+|+|||||||+|+.|.+.++..+.+++.|.++... .. ........+...
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~ 81 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEALPLKCQDAEGGIEFDGDGGVSPGPEFRLLEGAWYEAVAAM 81 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHHhcChhhcccccccccCccCCcccchHHHHHHHHHHHHHHHH
Confidence 35899999999999999999999987777788888663110 00 011233667889
Q ss_pred HHCCCcEEEecCCC-CHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244 75 LKKGKSVFLDRCNL-EREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (611)
Q Consensus 75 L~~Gk~VIID~tnl-~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~ 127 (611)
+..|.+||+|.++. ....|..+..+ .+..+++|++.+|.++|.+|+.+|..
T Consensus 82 l~~G~~VIvD~~~~~~~~~r~~~~~~--~~~~~~~v~l~~~~~~l~~R~~~R~~ 133 (175)
T cd00227 82 ARAGANVIADDVFLGRAALQDCWRSF--VGLDVLWVGVRCPGEVAEGRETARGD 133 (175)
T ss_pred HhCCCcEEEeeeccCCHHHHHHHHHh--cCCCEEEEEEECCHHHHHHHHHhcCC
Confidence 99999999999887 55556555444 33567899999999999999999975
No 30
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=99.40 E-value=3.3e-12 Score=119.32 Aligned_cols=135 Identities=21% Similarity=0.225 Sum_probs=104.1
Q ss_pred EcCCCCcHHHHHHHHHHHcCCCeEEeecchhc---------------cCCCCcHHHH-HHHHHHHHHCCCcEEEecCCCC
Q 007244 26 VGAPGSGKSTFCEHVMRSSARPWARICQDTIN---------------KGKSGTKVQC-LTSASSALKKGKSVFLDRCNLE 89 (611)
Q Consensus 26 vG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~---------------~~~~~~~~~~-~~~~~~~L~~Gk~VIID~tnl~ 89 (611)
+|.+||||||++..|+++++..| |+.|++. ++.+..|-+. -..+......|+.+||-+..+.
T Consensus 1 MGVsG~GKStvg~~lA~~lg~~f--idGDdlHp~aNi~KM~~GiPL~DdDR~pWL~~l~~~~~~~~~~~~~~vi~CSALK 78 (161)
T COG3265 1 MGVSGSGKSTVGSALAERLGAKF--IDGDDLHPPANIEKMSAGIPLNDDDRWPWLEALGDAAASLAQKNKHVVIACSALK 78 (161)
T ss_pred CCCCccCHHHHHHHHHHHcCCce--ecccccCCHHHHHHHhCCCCCCcchhhHHHHHHHHHHHHhhcCCCceEEecHHHH
Confidence 59999999999999999999555 8888873 1233345443 3455555566777888888888
Q ss_pred HHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhccCCCccCCccEEEEcCChhhH
Q 007244 90 REQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQNENDV 169 (611)
Q Consensus 90 ~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~e~P~~~EgFd~V~vv~~~~ev 169 (611)
+.+|..+ +.....+.+|||+.+.+++.+|+..|..| .+|..++.++...+|+|...| +++.++.+..+
T Consensus 79 r~YRD~L---R~~~~~~~Fv~L~g~~~~i~~Rm~~R~gH------FM~~~ll~SQfa~LE~P~~de---~vi~idi~~~~ 146 (161)
T COG3265 79 RSYRDLL---REANPGLRFVYLDGDFDLILERMKARKGH------FMPASLLDSQFATLEEPGADE---DVLTIDIDQPP 146 (161)
T ss_pred HHHHHHH---hccCCCeEEEEecCCHHHHHHHHHhcccC------CCCHHHHHHHHHHhcCCCCCC---CEEEeeCCCCH
Confidence 7777776 44444589999999999999999999998 799999999999999999877 45566555555
Q ss_pred HHHHH
Q 007244 170 QAALD 174 (611)
Q Consensus 170 d~av~ 174 (611)
+.++.
T Consensus 147 e~vv~ 151 (161)
T COG3265 147 EEVVA 151 (161)
T ss_pred HHHHH
Confidence 55544
No 31
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=99.39 E-value=7.1e-12 Score=121.16 Aligned_cols=105 Identities=23% Similarity=0.381 Sum_probs=77.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeec-chhcc------------------CCCCcHHHHHHHHHHHHHC--CCc
Q 007244 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQ-DTINK------------------GKSGTKVQCLTSASSALKK--GKS 80 (611)
Q Consensus 22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~-D~i~~------------------~~~~~~~~~~~~~~~~L~~--Gk~ 80 (611)
+|+|+|+|||||||+|+.|++.++ +.+|+. |.++. +...+.+.+...+.+++.. +..
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~--~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~ 78 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFG--FTHLSAGDLLRAEIKSGSENGELIESMIKNGKIVPSEVTVKLLKNAIQADGSKK 78 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC--CeEEECChHHHHHHhcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccCCCc
Confidence 589999999999999999999998 566876 34431 1122222233455555543 567
Q ss_pred EEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccc
Q 007244 81 VFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEH 128 (611)
Q Consensus 81 VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~ 128 (611)
||||+++.+..++..|..+ ......-.+|+|++|.+++.+|+.+|...
T Consensus 79 ~vlDg~p~~~~q~~~~~~~~~~~~~~d~~i~l~~~~~~~~~Rl~~R~~~ 127 (183)
T TIGR01359 79 FLIDGFPRNEENLEAWEKLMDNKVNFKFVLFFDCPEEVMIKRLLKRGQS 127 (183)
T ss_pred EEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCCcc
Confidence 9999999999999988776 43222234899999999999999999763
No 32
>PRK14527 adenylate kinase; Provisional
Probab=99.38 E-value=5.8e-12 Score=123.44 Aligned_cols=154 Identities=21% Similarity=0.257 Sum_probs=100.5
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh-cc------------------CCCCcHHHHHHHHHHHHHC-
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-NK------------------GKSGTKVQCLTSASSALKK- 77 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i-~~------------------~~~~~~~~~~~~~~~~L~~- 77 (611)
.+|.+|+|+|+|||||||+|+.|++.++ +.+++.+++ +. +...+.+.+...+...+..
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~--~~~is~gd~~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~l~~~~l~~~ 81 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELG--LKKLSTGDILRDHVARGTELGQRAKPIMEAGDLVPDELILALIRDELAGM 81 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhC--CCCCCccHHHHHHHhcCcHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC
Confidence 4678999999999999999999999998 445765444 21 2222333345666666665
Q ss_pred -CCcEEEecCCCCHHHHHHHHHh-CCCCCeE-EEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhcc---CC
Q 007244 78 -GKSVFLDRCNLEREQRTDFVKL-GGPEVDV-HAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKE---LP 151 (611)
Q Consensus 78 -Gk~VIID~tnl~~~~R~~~~~l-~~~~~~v-~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~e---~P 151 (611)
+..+|+|+++.+..++..+..+ +..+..+ .+++|++|.+++.+|+.+|....+ +.++..+.+.+|+ +.|. .|
T Consensus 82 ~~~~~VlDGfpr~~~q~~~~~~~~~~~g~~~~~vi~l~~~~~~~~~Rl~~R~~~~~-r~dd~~~~~~~R~-~~y~~~~~~ 159 (191)
T PRK14527 82 EPVRVIFDGFPRTLAQAEALDRLLEELGARLLAVVLLEVPDEELIRRIVERARQEG-RSDDNEETVRRRQ-QVYREQTQP 159 (191)
T ss_pred CCCcEEEcCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCcccCC-CCCCCHHHHHHHH-HHHHHHhHH
Confidence 4569999988888888888777 6655554 478999999999999999975432 3444444444444 3332 12
Q ss_pred Cc--cCCccEEEEcCChhhHHHHHHH
Q 007244 152 KL--SEGFSRITLCQNENDVQAALDT 175 (611)
Q Consensus 152 ~~--~EgFd~V~vv~~~~evd~av~~ 175 (611)
.. +..-..++.++....++++...
T Consensus 160 v~~~y~~~~~~~~id~~~~~~~v~~~ 185 (191)
T PRK14527 160 LVDYYEARGHLKRVDGLGTPDEVYAR 185 (191)
T ss_pred HHHHHHhcCCEEEEECCCCHHHHHHH
Confidence 11 1111235566666666655443
No 33
>cd02901 Macro_Poa1p_like Macro domain, Poa1p_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family show similarity to the yeast protein Poa1p, reported to be a phosphatase specific for Appr-1"-p, a tRNA splicing metabolite. Poa1p may play a role in tRNA splicing regulation.
Probab=99.37 E-value=3.2e-12 Score=119.30 Aligned_cols=110 Identities=13% Similarity=0.054 Sum_probs=88.9
Q ss_pred EEEEEccccee-cccCcccccEEEeCCCCCCcCCCChhhHHHHHh--hcH-HHHHHHHHhcCCCCCCCEEEecCCCCCCC
Q 007244 345 FFTFVGDITRL-YTGGGLCCNVIANAANWRLKPGGGGVNAAIFSA--AGP-ALEVATAERAKSLYPGNSVIVPLPSTSPL 420 (611)
Q Consensus 345 v~i~~GDIt~~-~~~~~~~~daIVN~aN~~L~~~ggGVa~aI~~a--AG~-~l~~e~~~~~~~~~~G~~v~T~l~~~~~~ 420 (611)
|++++|||++. . +|+|||++|..+. +|+|++.+|.++ +++ .+++.|++. .+..|++++++.
T Consensus 2 i~~v~GDi~~~~~------~d~Iv~~~N~~~~-mG~Gia~~i~~~~p~~~~~~~~~~~~~--~~~~G~~~~~~~------ 66 (140)
T cd02901 2 ITYVKGDLLHAPE------AAALAHAVNCDGV-MGKGIALQFKEKFPEFVEEYRAACKKK--ELLLGGVAVLER------ 66 (140)
T ss_pred eEEEcCccccCCC------CCEEEEEEcCCCc-cChHHHHHHHHHCcHHHHHHHHHHHhc--CCCCCcEEEEec------
Confidence 77899999999 6 9999999999999 999999999997 444 777777764 356788877662
Q ss_pred CCCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHH-----HhhccccCCC
Q 007244 421 CGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFL-----SIVRSQEKLS 478 (611)
Q Consensus 421 ~~~l~~k~ViH~vgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a~-----siafp~~~~~ 478 (611)
.+.+++++|+|+++|.+....+ ..+.|++|++++++.+. |||||.||.+
T Consensus 67 ~~~~~~~~I~~~~t~~~~~~~~---------~~~~l~~~l~~~~~~a~~~~~~sva~P~iG~G 120 (140)
T cd02901 67 GSSLVSRYIYNLPTKVHYGPKS---------RYEAIEKSLRELRAHARDNGIKSVAMPRIGCG 120 (140)
T ss_pred CCCCCceEEEEeeccCCCCCCC---------cHHHHHHHHHHHHHHHHHcCCCEEeeCCCCCc
Confidence 1234569999999998765322 25799999999999874 9999999943
No 34
>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=99.35 E-value=2.7e-11 Score=117.01 Aligned_cols=155 Identities=18% Similarity=0.336 Sum_probs=111.9
Q ss_pred cCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh-c-------------------cCCCCcHHHHHHHHHHHH
Q 007244 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-N-------------------KGKSGTKVQCLTSASSAL 75 (611)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i-~-------------------~~~~~~~~~~~~~~~~~L 75 (611)
...+|.+|++.|.|||||-|.|.++++.++ |.|++..++ | +|...+.+.+..++.++|
T Consensus 4 ~~~~~~IifVlGGPGsgKgTqC~kiv~ky~--ftHlSaGdLLR~E~~~~gse~g~~I~~~i~~G~iVP~ei~~~LL~~am 81 (195)
T KOG3079|consen 4 KLDKPPIIFVLGGPGSGKGTQCEKIVEKYG--FTHLSAGDLLRAEIASAGSERGALIKEIIKNGDLVPVEITLSLLEEAM 81 (195)
T ss_pred cccCCCEEEEEcCCCCCcchHHHHHHHHcC--ceeecHHHHHHHHHccccChHHHHHHHHHHcCCcCcHHHHHHHHHHHH
Confidence 457789999999999999999999999999 899996444 2 233334445557777777
Q ss_pred HCCCc---EEEecCCCCHHHHHHHHHh-C-CCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhh--c
Q 007244 76 KKGKS---VFLDRCNLEREQRTDFVKL-G-GPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQK--K 148 (611)
Q Consensus 76 ~~Gk~---VIID~tnl~~~~R~~~~~l-~-~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~--~ 148 (611)
..... ++||+.+.+.++...|-+. . ... .++||||+.++|++|+..|+.... +.++..+.+-.|+... .
T Consensus 82 ~~~~~~~~fLIDGyPR~~~q~~~fe~~i~~~~~---fvl~fdc~ee~~l~Rll~R~q~~~-R~DDn~esikkR~et~~~~ 157 (195)
T KOG3079|consen 82 RSSGDSNGFLIDGYPRNVDQLVEFERKIQGDPD---FVLFFDCPEETMLKRLLHRGQSNS-RSDDNEESIKKRLETYNKS 157 (195)
T ss_pred HhcCCCCeEEecCCCCChHHHHHHHHHhcCCCC---EEEEEeCCHHHHHHHHHhhcccCC-CCCCchHHHHHHHHHHHHc
Confidence 65433 9999999999999999776 4 333 488999999999999999988533 5555555555554432 2
Q ss_pred cCCCc--cCCccEEEEcCChhhHHHHHHHh
Q 007244 149 ELPKL--SEGFSRITLCQNENDVQAALDTY 176 (611)
Q Consensus 149 e~P~~--~EgFd~V~vv~~~~evd~av~~~ 176 (611)
..|-. .|.-..+..++.+.+++++-...
T Consensus 158 t~Pvi~~~e~kg~l~~i~a~~~~d~Vf~~v 187 (195)
T KOG3079|consen 158 TLPVIEYYEKKGKLLKINAERSVDDVFEEV 187 (195)
T ss_pred chHHHHHHHccCcEEEecCCCCHHHHHHHH
Confidence 23432 44444677777777777665443
No 35
>PRK14531 adenylate kinase; Provisional
Probab=99.34 E-value=1.2e-11 Score=120.54 Aligned_cols=149 Identities=19% Similarity=0.261 Sum_probs=94.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeec-chhcc------------------CCCCcHHHHHHHHHHHHH--CC
Q 007244 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ-DTINK------------------GKSGTKVQCLTSASSALK--KG 78 (611)
Q Consensus 20 p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~-D~i~~------------------~~~~~~~~~~~~~~~~L~--~G 78 (611)
+.-|+|+|+|||||||+++.|++.++ +.+|+. |.++. |...+..-+...+...|. .+
T Consensus 2 ~~~i~i~G~pGsGKsT~~~~la~~~g--~~~is~gd~lr~~~~~~~~~~~~~~~~~~~G~~v~d~l~~~~~~~~l~~~~~ 79 (183)
T PRK14531 2 KQRLLFLGPPGAGKGTQAARLCAAHG--LRHLSTGDLLRSEVAAGSALGQEAEAVMNRGELVSDALVLAIVESQLKALNS 79 (183)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC--CCeEecccHHHHHHhcCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhccC
Confidence 44689999999999999999999998 445765 44432 122222223344444554 35
Q ss_pred CcEEEecCCCCHHHHHHHHHh-CCCCCeE-EEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhh--ccCCCc-
Q 007244 79 KSVFLDRCNLEREQRTDFVKL-GGPEVDV-HAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQK--KELPKL- 153 (611)
Q Consensus 79 k~VIID~tnl~~~~R~~~~~l-~~~~~~v-~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~--~e~P~~- 153 (611)
..+|||+++.+..++..+..+ ...+..+ .+++|++|.+++.+|+..|.+. ++.++.+..|+... ...|..
T Consensus 80 ~g~ilDGfpr~~~q~~~~~~~~~~~~~~~~~vi~l~~~~~~l~~Rl~~R~r~-----dD~~e~i~~Rl~~y~~~~~pv~~ 154 (183)
T PRK14531 80 GGWLLDGFPRTVAQAEALEPLLEELKQPIEAVVLLELDDAVLIERLLARGRA-----DDNEAVIRNRLEVYREKTAPLID 154 (183)
T ss_pred CcEEEeCCCCCHHHHHHHHHHHHHcCCCCCeEEEEECCHHHHHHHhhcCCCC-----CCCHHHHHHHHHHHHHHHHHHHH
Confidence 679999999999999888776 5444433 4889999999999999999652 24444444444322 112221
Q ss_pred -cCCccEEEEcCChhhHHHHHHH
Q 007244 154 -SEGFSRITLCQNENDVQAALDT 175 (611)
Q Consensus 154 -~EgFd~V~vv~~~~evd~av~~ 175 (611)
++.-..++.++....++++...
T Consensus 155 ~y~~~~~~~~id~~~~~~~v~~~ 177 (183)
T PRK14531 155 HYRQRGLLQSVEAQGSIEAITER 177 (183)
T ss_pred HHHhcCCEEEEECCCCHHHHHHH
Confidence 1111235566655566655443
No 36
>PRK14532 adenylate kinase; Provisional
Probab=99.34 E-value=2e-11 Score=118.88 Aligned_cols=148 Identities=16% Similarity=0.246 Sum_probs=95.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh-cc------------------CCCCcHHHHHHHHHHHHH---CCCc
Q 007244 23 VIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-NK------------------GKSGTKVQCLTSASSALK---KGKS 80 (611)
Q Consensus 23 IvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i-~~------------------~~~~~~~~~~~~~~~~L~---~Gk~ 80 (611)
|+|+|+|||||||+|+.|++.++ +.+|+.|++ ++ +.......+...+.+.+. .+..
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~g--~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g 80 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEERG--MVQLSTGDMLRAAIASGSELGQRVKGIMDRGELVSDEIVIALIEERLPEAEAAGG 80 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC--CeEEeCcHHHHHHHHcCCHHHHHHHHHHHCCCccCHHHHHHHHHHHHhCcCccCc
Confidence 88999999999999999999998 666887443 32 112222223344444443 3567
Q ss_pred EEEecCCCCHHHHHHHHHh-CCCCCeE-EEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhccC-----CCc
Q 007244 81 VFLDRCNLEREQRTDFVKL-GGPEVDV-HAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKEL-----PKL 153 (611)
Q Consensus 81 VIID~tnl~~~~R~~~~~l-~~~~~~v-~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~e~-----P~~ 153 (611)
+|+|+++.+..++..+..+ ...+..+ .+|+|++|.+++.+|+..|.... .+.++.++...+|+...+.. +.+
T Consensus 81 ~vldg~pr~~~q~~~~~~~l~~~g~~pd~vi~L~v~~~~~~~Rl~~R~~~~-~r~dd~~~~~~~Rl~~~~~~~~~i~~~y 159 (188)
T PRK14532 81 AIFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKVDDEALIERIVKRFEEQ-GRPDDNPEVFVTRLDAYNAQTAPLLPYY 159 (188)
T ss_pred EEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCcCcC-CCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988776 5555444 68999999999999999985321 13334555555555443321 112
Q ss_pred cCCccEEEEcCChhhHHHHHH
Q 007244 154 SEGFSRITLCQNENDVQAALD 174 (611)
Q Consensus 154 ~EgFd~V~vv~~~~evd~av~ 174 (611)
.+. ..++.++....++++..
T Consensus 160 ~~~-~~~~~id~~~~~eev~~ 179 (188)
T PRK14532 160 AGQ-GKLTEVDGMGSIEAVAA 179 (188)
T ss_pred Hhc-CCEEEEECCCCHHHHHH
Confidence 221 23555555455555444
No 37
>COG0645 Predicted kinase [General function prediction only]
Probab=99.33 E-value=2.9e-11 Score=115.66 Aligned_cols=128 Identities=25% Similarity=0.229 Sum_probs=104.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCC-------------------cHHHHHHHHHHHHHCCCc
Q 007244 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG-------------------TKVQCLTSASSALKKGKS 80 (611)
Q Consensus 20 p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~-------------------~~~~~~~~~~~~L~~Gk~ 80 (611)
+.++++.|.|||||||+|+.+.+.++ ..+|..|.++..-++ .+...+..+...|..|.+
T Consensus 1 ~~l~l~~Gl~GsGKstlA~~l~~~lg--A~~lrsD~irk~L~g~p~~~r~~~g~ys~~~~~~vy~~l~~~A~l~l~~G~~ 78 (170)
T COG0645 1 GRLVLVGGLPGSGKSTLARGLAELLG--AIRLRSDVIRKRLFGVPEETRGPAGLYSPAATAAVYDELLGRAELLLSSGHS 78 (170)
T ss_pred CeEEEEecCCCccHhHHHHHHHhhcC--ceEEehHHHHHHhcCCcccccCCCCCCcHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 36899999999999999999999998 667888988643222 123455788899999999
Q ss_pred EEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhccCCCc
Q 007244 81 VFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKL 153 (611)
Q Consensus 81 VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~e~P~~ 153 (611)
||+|+++..+.+|..++.+ +..+..+..|.++.|.+++..|+..|..... +--..+++.+...++....
T Consensus 79 VVlDa~~~r~~~R~~~~~~A~~~gv~~~li~~~ap~~v~~~rl~aR~~d~s----DA~~~il~~q~~~~~~~~~ 148 (170)
T COG0645 79 VVLDATFDRPQERALARALARDVGVAFVLIRLEAPEEVLRGRLAARKGDAS----DATFDILRVQLAEDEPWTE 148 (170)
T ss_pred EEEecccCCHHHHHHHHHHHhccCCceEEEEcCCcHHHHHHHHHHhCCCcc----cchHHHHHHHHhhhCCccc
Confidence 9999999999999999999 9999999999999999999999999987321 3345666777777655543
No 38
>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]
Probab=99.33 E-value=1.4e-15 Score=159.56 Aligned_cols=416 Identities=23% Similarity=0.182 Sum_probs=263.3
Q ss_pred ecCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhccCCCccCCccEEEEc
Q 007244 84 DRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLC 163 (611)
Q Consensus 84 D~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~e~P~~~EgFd~V~vv 163 (611)
|.++..+. +..++....+...++..+.+.+...+-.++..|..|.+.....--.....-|+..+..+...+++..+.+.
T Consensus 3 ~~~~~~~~-~~~~i~~g~~~~~~~~~~~~~~~q~~ds~~~~~~v~~~~~~~~~w~~~~ng~L~i~~~~~v~~~~K~i~FD 81 (422)
T KOG2134|consen 3 DRERLLRE-DSEFISYGLHEFEVHKKVTPEPAQSKDSDLVGTLVHLPQKIGGRWSSTENGMLQIFTLPKVNGGSKIIMFD 81 (422)
T ss_pred cccccccc-chhHHhcCCcccceeecccCCccccccCcccccccccccccCCCcccccCcceEEeeccccCCCcceEEEe
Confidence 34444444 55555554555667777888888999999988775544333333445556677778888888998888888
Q ss_pred CChhhHHHHHHHhccCCCCcccCCCCCCCCCCchhhhhhHHHHHHhhcCCCCCCCCCCCCCCCCCCcccccccccccccc
Q 007244 164 QNENDVQAALDTYSGLGPLDTLPHGSFGQKNPDAKIQLGIMKFLKKVDAPSNTGSTASSTQDPVPPQITEEKNSCLEGQE 243 (611)
Q Consensus 164 ~~~~evd~av~~~~~lgp~dII~~gc~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (611)
-+...++.....+...++-|-..-+|+.....+.+.|+||+.|+++.+.+.-.+.... .+ .+ .+.
T Consensus 82 ~dgtlI~t~sg~vf~~~~~dw~~l~~~vp~Klktl~~~g~~l~iftnq~~i~r~~~~~--~~-f~----------~Ki-- 146 (422)
T KOG2134|consen 82 YDGTLIDTKSGKVFPKGSMDWRILFPEVPSKLKTLYQDGIKLFIFTNQNGIARGKLEL--EE-FK----------KKI-- 146 (422)
T ss_pred cCCceeecCCcceeeccCccceeeccccchhhhhhccCCeEEEEEecccccccCcchH--HH-HH----------HHH--
Confidence 7777777766666666665543357888888999999999999988887663221100 00 00 000
Q ss_pred eeecccccccccccCCCCcchhhhcccCCCCCCCccccccCccCCCCCChHHHHHHHHHHHHHHHHhcCCeEEE-EeecC
Q 007244 244 ITSLLSDAAGEEVKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGNARLV-LVDLT 322 (611)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~SiAfPaIStGi~gfP~~~aa~Iiv~tv~~f~~~~~~i~iV-~vd~s 322 (611)
..+-.++++..... .+..--..++|.+|.-.|.+-...++..|.+.+..|+-+.-.-... ..+..
T Consensus 147 ----------~~i~anl~vPi~~~----~A~~~~~yRKP~tGMwe~~~~~~nd~~~Isek~s~fvgdaagr~~~~~~~kk 212 (422)
T KOG2134|consen 147 ----------KAIVANLGVPIQLL----AAIIKGKYRKPSTGMWEFLKRLENDSVEISEKASIFVGDAAGRPLDALRRKK 212 (422)
T ss_pred ----------HHHHHhcCCceEEe----eeccCCcccCcchhHHHHHHHHhhccceeeechhhhhhhhccCccccccCcc
Confidence 00011111111100 0111125566666665565555566666666666665553222222 22233
Q ss_pred cchhhhhhhHHHhhhhhcCCeEEEEEEcccceecccCcccccEEEeCCCCCCcCCCCh--hhHHHHHhhcHHHHHHHHHh
Q 007244 323 QGSKILSLVRAKAAQKHINPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGG--VNAAIFSAAGPALEVATAER 400 (611)
Q Consensus 323 ~~s~~Ls~V~s~~~~~~~~~~~v~i~~GDIt~~~~~~~~~~daIVN~aN~~L~~~ggG--Va~aI~~aAG~~l~~e~~~~ 400 (611)
..+.....+...+-..-.....++...++++ +.+-+..-+.+|++++|+.|.+.++| |..+++.++|+....+.+=.
T Consensus 213 d~S~~D~~FAaN~gvkF~tPeefF~g~~~~~-~~~~~fdp~n~i~~~t~~~~~~~~~~eiV~~vgfp~sGks~f~a~~~~ 291 (422)
T KOG2134|consen 213 DHSSADRKFAANAGVKFKTPEEFFLGVGVVT-WNSPGFDPKNVISRATSLCLKLDGHGEIVVAVGFPGSGKSTFAAKRVV 291 (422)
T ss_pred cccHHHHHHHHhcCCccCCHHHHhccccccc-cCCCCCCchhHHhhhcchhcccCCCCcEEEEEecCCCCcchhhhhhcc
Confidence 3333332222222122223456777888888 65556666899999999999988888 99999999999988876655
Q ss_pred cCCCCCCCEEEecCCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 007244 401 AKSLYPGNSVIVPLPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFLSIVRSQEKLSKG 480 (611)
Q Consensus 401 ~~~~~~G~~v~T~l~~~~~~~~~l~~k~ViH~vgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a~siafp~~~~~~~ 480 (611)
.+...++++.+.+.|++|++.+..+.++++|||+ ++.+|+-..++|-..+..++.+|-+||.+..|...-+-...
T Consensus 292 ~~~y~~vn~d~lg~~~~C~~~~~e~l~~~~sVvi---dnt~pd~~sr~~~~~~a~e~~~p~rcf~~~~s~eq~~hn~~-- 366 (422)
T KOG2134|consen 292 PNGYKIVNADTLGTPQNCLLANAEALKHGKSVVI---DNTNPDAESRKYYLDCATEREIPIRCFEMNSSVEQAQHNNR-- 366 (422)
T ss_pred cCceeEeecccCCCchhhHHHHHHHhhcccEEee---CCCCcchHHHHHHhhhHHHhCccceeeeeccHHHhhhcccc--
Confidence 5566677777777888999999999999999998 34455544444444567888888888888777665322211
Q ss_pred CCcCcccCCCccCCCCcCccCCcccCCCccccCCCccchhccccccCCcccccccccccccccccccccCcccccch
Q 007244 481 CNEDIRLEPSVSQDHSEDVHGNYISTGDKIKRDGGHEYEQSKKCKTQNEVGTDINLSRAANLSADNEKIGVSTSKAW 557 (611)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (611)
..++|| .+-+.+.+| ...++|+|++|++.+.+++.+...+-+ +....+..+.|.|
T Consensus 367 --------fR~~~~-------~~~~~~~dm----~~~~~k~kf~~ptl~egft~i~ev~f~---~~~~~~ekl~k~~ 421 (422)
T KOG2134|consen 367 --------FRELSD-------SVKDSGSDM----VFNSEKSKFQKPTLDEGFTNILEVPFK---DTRESGEKLYKMW 421 (422)
T ss_pred --------chhhcc-------chhcccccc----eeehhhccccCchHhhhhhhhhccchh---hhhhhhhhHhhcc
Confidence 112222 112223344 678999999999999999988887654 3555666666666
No 39
>cd02904 Macro_H2A_like Macro domain, Macro_H2A_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family are similar to macroH2A, a variant of the major-type core histone H2A, which contains an N-terminal H2A domain and a C-terminal nonhistone macro domain. Histone macroH2A is enriched on the inactive X chromosome of mammalian female cells. It does not bind poly ADP-r
Probab=99.30 E-value=1.7e-12 Score=126.97 Aligned_cols=109 Identities=11% Similarity=0.118 Sum_probs=84.7
Q ss_pred CCchhhhhhHHHHHHhhcCC-CCCCCCCCCCCCCCCCcccccccccccccceeecccccccccccCCCCcchhhhcccCC
Q 007244 194 NPDAKIQLGIMKFLKKVDAP-SNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGEEVKGTENPEVASVNQNGS 272 (611)
Q Consensus 194 ~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 272 (611)
+.....++.|++-.+++.+. .....+++ . .|.+.++.|.++.|.+.|.|.. ....+.+...-.+||..|+
T Consensus 54 AI~~aaG~~l~~ec~~~~~~~g~~~~G~~-----~--iT~a~~Lp~k~VIHtVgP~~~~--~~~~~~L~~~~~~~L~~A~ 124 (186)
T cd02904 54 ALEKKGGKEFVEAVKELRKSNGPLEIAGA-----A--VSQAHGLPAKFVIHCHSPQWGS--DKCEEQLEKTVKNCLAAAE 124 (186)
T ss_pred HHHHHcCHHHHHHHHHHHHhcCCCCCCCE-----E--EccCCCCCCCEEEEeCCCCCCC--CchHHHHHHHHHHHHHHHH
Confidence 55666788899887766432 11111222 1 3667889999999999999964 2223444556678999999
Q ss_pred CCCCCccccccCccCCCCCChHHHHHHHHHHHHHHHHhc
Q 007244 273 SSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKL 311 (611)
Q Consensus 273 ~~~~~SiAfPaIStGi~gfP~~~aa~Iiv~tv~~f~~~~ 311 (611)
+++++|||||+||||+||||.++||+|++++|.+|+.++
T Consensus 125 e~~~~SIAfPaIstG~~g~P~~~aA~i~~~~i~~~l~~~ 163 (186)
T cd02904 125 DKKLKSIAFPSLPSGRNGFPKQTAAQLILKAISSYFVST 163 (186)
T ss_pred HcCCCEEEECCcccCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999885
No 40
>PRK14737 gmk guanylate kinase; Provisional
Probab=99.27 E-value=2.5e-11 Score=119.09 Aligned_cols=135 Identities=13% Similarity=0.119 Sum_probs=90.4
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEE--------------------eecchh----ccCCCCcHHH-------
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWAR--------------------ICQDTI----NKGKSGTKVQ------- 66 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~--------------------Is~D~i----~~~~~~~~~~------- 66 (611)
..|.+|+|+|||||||||++++|.+.++..+.. ++.+.+ ..+.+.+|..
T Consensus 2 ~~~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r~gE~~G~dY~fvs~~~F~~~i~~~~f~e~~~~~g~~YG 81 (186)
T PRK14737 2 ASPKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPRPGDEEGKTYFFLTIEEFKKGIADGEFLEWAEVHDNYYG 81 (186)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCCCCCCCCCceeEeCCHHHHHHHHHcCCeEEEEEECCeeec
Confidence 468899999999999999999999876422211 112221 1223332211
Q ss_pred -HHHHHHHHHHCCCcEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeC-CHHHHHHHHHhcccccCCCCCCCHHHHHHH
Q 007244 67 -CLTSASSALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDL-PAKLCISRSVKRIEHEGNLQGGKAAAVVNR 143 (611)
Q Consensus 67 -~~~~~~~~L~~Gk~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~-p~e~~~~Rl~~R~~~~g~~~~~vpeevi~r 143 (611)
-...+...+..|+.+|+|. +++.+..+ +..+..+.+||+.+ +.+++.+|+.+|.. ...+++-.|
T Consensus 82 t~~~~i~~~~~~g~~~i~d~------~~~g~~~l~~~~~~~~~~Ifi~pps~e~l~~RL~~R~~-------~s~e~i~~R 148 (186)
T PRK14737 82 TPKAFIEDAFKEGRSAIMDI------DVQGAKIIKEKFPERIVTIFIEPPSEEEWEERLIHRGT-------DSEESIEKR 148 (186)
T ss_pred CcHHHHHHHHHcCCeEEEEc------CHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHhcCC-------CCHHHHHHH
Confidence 1155788899999999998 67777777 55554434566655 67999999999976 344566666
Q ss_pred HHhhccCCCccCCccEEEEcCC
Q 007244 144 MLQKKELPKLSEGFSRITLCQN 165 (611)
Q Consensus 144 m~~~~e~P~~~EgFd~V~vv~~ 165 (611)
+..+..+-.....||.|+.+++
T Consensus 149 l~~~~~e~~~~~~~D~vI~N~d 170 (186)
T PRK14737 149 IENGIIELDEANEFDYKIINDD 170 (186)
T ss_pred HHHHHHHHhhhccCCEEEECcC
Confidence 7665433334566888888864
No 41
>PRK04143 hypothetical protein; Provisional
Probab=99.25 E-value=3.5e-12 Score=131.05 Aligned_cols=128 Identities=12% Similarity=0.071 Sum_probs=92.0
Q ss_pred CCCCCCCCCchhhhhhHHHHHHhhcCC---CCCCCCCCCCCCCCCCcccccccccccccceeeccccccc--ccccCCCC
Q 007244 187 HGSFGQKNPDAKIQLGIMKFLKKVDAP---SNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAG--EEVKGTEN 261 (611)
Q Consensus 187 ~gc~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 261 (611)
|||-.. .....+++.|..-.+++-.. .-.++... .|.+.++.|.++-|.|-|.|..+. ......+.
T Consensus 116 ~ggId~-aI~~aAG~~L~~eC~~~~~~~g~~~~~G~a~--------iT~~~nLp~kyVIHtVgP~~~~g~~~~~~~~~L~ 186 (264)
T PRK04143 116 HDCIDN-AIHTFAGVQLRLDCAEIMTEQGRKEATGQAK--------ITRAYNLPAKYVIHTVGPIIRKQPVSPIRADLLA 186 (264)
T ss_pred CCcHHH-HHHHHhChHHHHHHHHHHHHcCCCCCCceEE--------EecCCCCCCCEEEEECCCcccCCCCCcchHHHHH
Confidence 455443 45556677777765554221 11121222 477889999999999999987631 12223444
Q ss_pred cchhhhcccCCCCCCCccccccCccCCCCCChHHHHHHHHHHHHHHHHhcCC-eEEEEeecCc
Q 007244 262 PEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGN-ARLVLVDLTQ 323 (611)
Q Consensus 262 ~~~~s~~~~~~~~~~~SiAfPaIStGi~gfP~~~aa~Iiv~tv~~f~~~~~~-i~iV~vd~s~ 323 (611)
..-.+|+..|.+++++|||||+||||+||||.++||.|++++|++|+.+++. .+++++.+..
T Consensus 187 ~cy~s~L~~A~~~~~kSIAfP~IsTGi~gfP~~~aA~ia~~tv~~fl~~~~~~~~Vif~vf~~ 249 (264)
T PRK04143 187 SCYRSCLKLAEKAGLKSIAFCCISTGVFGFPKEEAAEIAIKTVLSWLKENPSKLKVVFNVFTD 249 (264)
T ss_pred HHHHHHHHHHHHcCCCEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEcCH
Confidence 4666889999999999999999999999999999999999999999998765 5666654443
No 42
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=99.25 E-value=7.5e-11 Score=114.71 Aligned_cols=104 Identities=24% Similarity=0.327 Sum_probs=78.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh-cc------------------CCCCcHHHHHHHHHHHHHC---CCc
Q 007244 23 VIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-NK------------------GKSGTKVQCLTSASSALKK---GKS 80 (611)
Q Consensus 23 IvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i-~~------------------~~~~~~~~~~~~~~~~L~~---Gk~ 80 (611)
|+|+|+|||||||+|+.|++.++ +.+++.|++ +. +.......+...+...|.. +..
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~--~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~l~~~~~~~~ 79 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYG--LPHISTGDLLREEIASGTELGKKAKEYIDSGKLVPDEIVIKLLKERLKKPDCKKG 79 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC--CeEEECcHHHHHHHhcCChHHHHHHHHHHcCCccCHHHHHHHHHHHHhcccccCC
Confidence 79999999999999999999988 556776554 21 1122222334566666664 578
Q ss_pred EEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccc
Q 007244 81 VFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEH 128 (611)
Q Consensus 81 VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~ 128 (611)
+|+|+++.+..++..+..+ ........+|+|++|.+++.+|+.+|...
T Consensus 80 ~vldg~Pr~~~q~~~l~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~~~ 128 (194)
T cd01428 80 FILDGFPRTVDQAEALDELLDEGIKPDKVIELDVPDEVLIERILGRRIC 128 (194)
T ss_pred EEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCcC
Confidence 9999999888888888777 54445556899999999999999999754
No 43
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=99.25 E-value=7.3e-11 Score=125.71 Aligned_cols=80 Identities=19% Similarity=0.253 Sum_probs=71.2
Q ss_pred HHHHCCCcEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhccCC
Q 007244 73 SALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELP 151 (611)
Q Consensus 73 ~~L~~Gk~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~e~P 151 (611)
..+.++..+|+|++|+.+.+|..+..+ +.++..+.+||+++|.++|++|+.+|.. .+++++++.|..++|.|
T Consensus 122 ~~LsrpllvilDd~fy~ks~Ryel~~LAr~~~~~~~~V~ld~ple~~l~RN~~R~~-------~v~devie~m~~r~E~P 194 (340)
T TIGR03575 122 PAVSRPLCLVLDDNFYYQSMRYEVYQLARKYSLGFCQLFLDCPVESCLLRNKQRPV-------PLPDETIQLMGRKIEKP 194 (340)
T ss_pred HHHhCCCCceecCCCCCHHHHHHHHHHHHHhCCCEEEEEEeCCHHHHHHHHhcCCC-------CCCHHHHHHHHHHhcCC
Confidence 344556679999999999999999999 8888889999999999999999999964 68999999999999999
Q ss_pred Cc-cCCccE
Q 007244 152 KL-SEGFSR 159 (611)
Q Consensus 152 ~~-~EgFd~ 159 (611)
.. ...|+.
T Consensus 195 ~~~~nrWd~ 203 (340)
T TIGR03575 195 NPEKNAWEH 203 (340)
T ss_pred CCCCCCCCC
Confidence 97 677775
No 44
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=99.24 E-value=1.1e-10 Score=116.13 Aligned_cols=101 Identities=19% Similarity=0.230 Sum_probs=76.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh-cc------------------CCCCcHHHHHHHHHHHHHC----CC
Q 007244 23 VIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-NK------------------GKSGTKVQCLTSASSALKK----GK 79 (611)
Q Consensus 23 IvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i-~~------------------~~~~~~~~~~~~~~~~L~~----Gk 79 (611)
|+|+|+|||||||+|+.|++.++ +.+|+.+++ +. +...+.+.+...+...+.. +.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g--~~~is~gdllr~~~~~~~~~~~~~~~~~~~g~~vp~~~~~~l~~~~i~~~~~~~~ 79 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYG--LPHISTGDLLRAEIKAGTPLGKKAKEYMEKGELVPDEIVNQLVKERLTQNQDNEN 79 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC--CCeeehhHHHHHhhccccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccCC
Confidence 78999999999999999999998 555776433 21 2233333445666777765 56
Q ss_pred cEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244 80 SVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (611)
Q Consensus 80 ~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~ 127 (611)
.||||+.+.+..++..+... .. ....+|+|++|.+++.+|+..|..
T Consensus 80 ~~ilDGfPrt~~Qa~~l~~~~~~--~~~~vi~L~~~~~~~~~Rl~~R~~ 126 (210)
T TIGR01351 80 GFILDGFPRTLSQAEALDALLKE--KIDAVIELDVPDEELVERLSGRRI 126 (210)
T ss_pred cEEEeCCCCCHHHHHHHHHHhcc--CCCEEEEEECCHHHHHHHHHCCCc
Confidence 89999988888888877666 32 223589999999999999999964
No 45
>PRK00279 adk adenylate kinase; Reviewed
Probab=99.22 E-value=1.9e-10 Score=114.95 Aligned_cols=104 Identities=16% Similarity=0.254 Sum_probs=76.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh-cc------------------CCCCcHHHHHHHHHHHHHC---CC
Q 007244 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-NK------------------GKSGTKVQCLTSASSALKK---GK 79 (611)
Q Consensus 22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i-~~------------------~~~~~~~~~~~~~~~~L~~---Gk 79 (611)
.|++.|+|||||||+|+.|++.++ +.+++.+++ +. +...+.......+.+.+.. +.
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~--~~~is~~dl~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~i~~~l~~~~~~~ 79 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYG--IPHISTGDMLRAAVKAGTELGKEAKSYMDAGELVPDEIVIGLVKERLAQPDCKN 79 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--CcEEECCccHHHHHhccchHHHHHHHHHHcCCcCCHHHHHHHHHHHHhccCccC
Confidence 389999999999999999999998 566775333 21 1222223344556666654 34
Q ss_pred cEEEecCCCCHHHHHHHHHh-CCCCCeE-EEEEEeCCHHHHHHHHHhccc
Q 007244 80 SVFLDRCNLEREQRTDFVKL-GGPEVDV-HAVVLDLPAKLCISRSVKRIE 127 (611)
Q Consensus 80 ~VIID~tnl~~~~R~~~~~l-~~~~~~v-~vV~Ld~p~e~~~~Rl~~R~~ 127 (611)
.+|||+++.+..+...+.+. ...+..+ .+|+|++|.+++.+|+..|..
T Consensus 80 g~VlDGfPr~~~qa~~l~~~l~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~ 129 (215)
T PRK00279 80 GFLLDGFPRTIPQAEALDEMLKELGIKLDAVIEIDVPDEELVERLSGRRI 129 (215)
T ss_pred CEEEecCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHhCCcc
Confidence 79999998888888877665 4444433 689999999999999999974
No 46
>PLN02674 adenylate kinase
Probab=99.22 E-value=1.7e-10 Score=117.80 Aligned_cols=107 Identities=19% Similarity=0.254 Sum_probs=80.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh-c------------------cCCCCcHHHHHHHHHHHHHC---
Q 007244 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-N------------------KGKSGTKVQCLTSASSALKK--- 77 (611)
Q Consensus 20 p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i-~------------------~~~~~~~~~~~~~~~~~L~~--- 77 (611)
+..|+|+|+|||||||+|+.|++.++ +.+|+.+++ + .|...+.+-+...+.++|..
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~~--~~his~GdllR~~i~~~s~~g~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~~ 108 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEYC--LCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSC 108 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcC--CcEEchhHHHHHHHhccChhhHHHHHHHHcCCccCHHHHHHHHHHHHhCcCc
Confidence 35588999999999999999999998 666875444 2 23333444444666777754
Q ss_pred CCcEEEecCCCCHHHHHHHHHh-CCCCCeE-EEEEEeCCHHHHHHHHHhcccc
Q 007244 78 GKSVFLDRCNLEREQRTDFVKL-GGPEVDV-HAVVLDLPAKLCISRSVKRIEH 128 (611)
Q Consensus 78 Gk~VIID~tnl~~~~R~~~~~l-~~~~~~v-~vV~Ld~p~e~~~~Rl~~R~~~ 128 (611)
+..+|+|+++.+..+...+..+ ...+..+ .+|+|++|.+++.+|+..|..+
T Consensus 109 ~~g~ilDGfPRt~~Qa~~l~~~l~~~~~~~d~vi~l~v~~~~l~~Rl~gR~~~ 161 (244)
T PLN02674 109 QKGFILDGFPRTVVQAQKLDEMLAKQGAKIDKVLNFAIDDAILEERITGRWIH 161 (244)
T ss_pred CCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhccccc
Confidence 3569999999999999888766 4444433 5889999999999999999654
No 47
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=99.21 E-value=3.7e-10 Score=109.92 Aligned_cols=136 Identities=21% Similarity=0.231 Sum_probs=94.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhcc---------C------CCCcHHHHH-HHHHHHHHCCC-cEE
Q 007244 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK---------G------KSGTKVQCL-TSASSALKKGK-SVF 82 (611)
Q Consensus 20 p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~---------~------~~~~~~~~~-~~~~~~L~~Gk-~VI 82 (611)
..+++|+|++||||||+++.+...++. .+++.|.+.. + ....+.... ..+...+..+. .+|
T Consensus 3 ge~i~l~G~sGsGKSTl~~~la~~l~~--~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i 80 (176)
T PRK09825 3 GESYILMGVSGSGKSLIGSKIAALFSA--KFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASYSLYKKNETGFI 80 (176)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCC--EEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHHHHHhcCCCEEE
Confidence 358999999999999999999998774 4577776421 1 111122222 22222233333 345
Q ss_pred EecCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhccCCCccCCccEEEE
Q 007244 83 LDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITL 162 (611)
Q Consensus 83 ID~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~e~P~~~EgFd~V~v 162 (611)
+ ++++....|..+ +..+..+.+|+|++|.+++.+|+.+|..| ..+.+++.++...+++|...|. .++.
T Consensus 81 v-~s~~~~~~R~~~---r~~~~~~~~v~l~a~~~~l~~Rl~~R~~~------~~~~~vl~~Q~~~~e~~~~~e~--~~~~ 148 (176)
T PRK09825 81 V-CSSLKKQYRDIL---RKSSPNVHFLWLDGDYETILARMQRRAGH------FMPPDLLQSQFDALERPCADEH--DIAR 148 (176)
T ss_pred E-EEecCHHHHHHH---HhhCCCEEEEEEeCCHHHHHHHHhcccCC------CCCHHHHHHHHHHcCCCCCCcC--CeEE
Confidence 5 878887777766 55566789999999999999999999864 4688999999999998877664 2555
Q ss_pred cCChhhH
Q 007244 163 CQNENDV 169 (611)
Q Consensus 163 v~~~~ev 169 (611)
++....+
T Consensus 149 ~d~~~~~ 155 (176)
T PRK09825 149 IDVNHDI 155 (176)
T ss_pred EECCCCH
Confidence 5544443
No 48
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=99.21 E-value=6.5e-11 Score=116.92 Aligned_cols=113 Identities=19% Similarity=0.257 Sum_probs=79.4
Q ss_pred cCCCcEEEEEEcCCCCcHHHHHHHHHHHc-CCCeEEeecchhccCCCCc---------------HH----HHHHHHHHHH
Q 007244 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSS-ARPWARICQDTINKGKSGT---------------KV----QCLTSASSAL 75 (611)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~-~~~~~~Is~D~i~~~~~~~---------------~~----~~~~~~~~~L 75 (611)
....|.+++|.|+|||||||++..+...+ ...+++|+.|.++...... .. .....+..++
T Consensus 11 ~~~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~~p~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~a~ 90 (199)
T PF06414_consen 11 PQEKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQFHPDYDELLKADPDEASELTQKEASRLAEKLIEYAI 90 (199)
T ss_dssp --SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGGSTTHHHHHHHHCCCTHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHhccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 45889999999999999999999999987 5567899999996432110 00 1125567788
Q ss_pred HCCCcEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccc
Q 007244 76 KKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEH 128 (611)
Q Consensus 76 ~~Gk~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~ 128 (611)
..+.++|+|+|.........+++. +..|+.+.++++.+|.++.+.|...|...
T Consensus 91 ~~~~nii~E~tl~~~~~~~~~~~~~k~~GY~v~l~~v~~~~e~s~~rv~~R~~~ 144 (199)
T PF06414_consen 91 ENRYNIIFEGTLSNPSKLRKLIREAKAAGYKVELYYVAVPPELSIERVRQRYEE 144 (199)
T ss_dssp HCT--EEEE--TTSSHHHHHHHHHHHCTT-EEEEEEE---HHHHHHHHHHHHHH
T ss_pred HcCCCEEEecCCCChhHHHHHHHHHHcCCceEEEEEEECCHHHHHHHHHHHHHc
Confidence 899999999998887777767777 88999999999999999999999999653
No 49
>PRK14530 adenylate kinase; Provisional
Probab=99.19 E-value=4.2e-10 Score=112.36 Aligned_cols=102 Identities=17% Similarity=0.186 Sum_probs=72.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh-ccC----------------------CCCcHHHHHHHHHHHHHCC
Q 007244 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-NKG----------------------KSGTKVQCLTSASSALKKG 78 (611)
Q Consensus 22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i-~~~----------------------~~~~~~~~~~~~~~~L~~G 78 (611)
.|+|+|+|||||||+|+.|++.++ +.+|+.+.+ +.. ...+.+.....+...+...
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~--~~~i~~g~~lr~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~l~~~l~~~ 82 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFG--VEHVTTGDALRANKQMDISDMDTEYDTPGEYMDAGELVPDAVVNEIVEEALSDA 82 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--CeEEeccHHHHHhccCCcccccchHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Confidence 588999999999999999999998 555665444 211 1111122334555666667
Q ss_pred CcEEEecCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccc
Q 007244 79 KSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEH 128 (611)
Q Consensus 79 k~VIID~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~ 128 (611)
..+|+|+.+.+..++..+..+... -.+|+|++|.+++.+|+..|...
T Consensus 83 ~~~IldG~pr~~~q~~~l~~~~~~---d~vI~Ld~~~~~l~~Rl~~R~~~ 129 (215)
T PRK14530 83 DGFVLDGYPRNLEQAEYLESITDL---DVVLYLDVSEEELVDRLTGRRVC 129 (215)
T ss_pred CCEEEcCCCCCHHHHHHHHHhcCC---CEEEEEeCCHHHHHHHHhCCCcC
Confidence 789999988887777766444222 23899999999999999999653
No 50
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=99.18 E-value=5.6e-10 Score=107.89 Aligned_cols=124 Identities=20% Similarity=0.305 Sum_probs=79.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh-cc------------------CCCCcHHHHHHH----HHHHHH
Q 007244 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-NK------------------GKSGTKVQCLTS----ASSALK 76 (611)
Q Consensus 20 p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i-~~------------------~~~~~~~~~~~~----~~~~L~ 76 (611)
..+|+|+|+|||||||+|+.+++.++ +.+++.+++ +. +...+...+... +...+.
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~g--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 80 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKYG--FTHLSTGDLLRAEVASGSERGKQLQAIMESGDLVPLDTVLDLLKDAMVAALG 80 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC--CcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcccC
Confidence 45899999999999999999999988 455765433 21 112222222222 333345
Q ss_pred CCCcEEEecCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhc
Q 007244 77 KGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKK 148 (611)
Q Consensus 77 ~Gk~VIID~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~ 148 (611)
.+..||+|+.+.+..+...+... ....-.+|+|++|.+++.+|+.+|.... .+.++.++.+.+|+...+
T Consensus 81 ~~~~~i~dg~~~~~~q~~~~~~~--~~~~~~vi~l~~~~~~~~~Rl~~R~~~~-~r~d~~~~~~~~r~~~~~ 149 (188)
T TIGR01360 81 TSKGFLIDGYPREVKQGEEFERR--IGPPTLVLYFDCSEDTMVKRLLKRAETS-GRVDDNEKTIKKRLETYY 149 (188)
T ss_pred cCCeEEEeCCCCCHHHHHHHHHc--CCCCCEEEEEECCHHHHHHHHHcccccC-CCCCCCHHHHHHHHHHHH
Confidence 67889999987766555544322 2223458999999999999999997522 133344555555655433
No 51
>PLN02200 adenylate kinase family protein
Probab=99.18 E-value=3.5e-10 Score=114.93 Aligned_cols=106 Identities=20% Similarity=0.411 Sum_probs=76.5
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeec-chhcc------------------CCCCcHHHHHHHHHHHHHC-
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ-DTINK------------------GKSGTKVQCLTSASSALKK- 77 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~-D~i~~------------------~~~~~~~~~~~~~~~~L~~- 77 (611)
..|.+|+|+|+|||||||+|+.|++.++ +.+|+. |.++. +...+.+.+...+.+.+..
T Consensus 41 ~~~~ii~I~G~PGSGKsT~a~~La~~~g--~~his~gdllR~~i~~~s~~~~~i~~~~~~G~~vp~e~~~~~l~~~l~~~ 118 (234)
T PLN02200 41 KTPFITFVLGGPGSGKGTQCEKIVETFG--FKHLSAGDLLRREIASNSEHGAMILNTIKEGKIVPSEVTVKLIQKEMESS 118 (234)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhC--CeEEEccHHHHHHHhccChhHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC
Confidence 3578999999999999999999999998 566876 44332 1112223333444555543
Q ss_pred -CCcEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244 78 -GKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (611)
Q Consensus 78 -Gk~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~ 127 (611)
+..+|||+.+.+..++..+..+ ... .-.+|+|++|.+++.+|+.+|..
T Consensus 119 ~~~~~ILDG~Prt~~q~~~l~~~~~~~--pd~vi~Ld~~~e~~~~Rl~~R~~ 168 (234)
T PLN02200 119 DNNKFLIDGFPRTEENRIAFERIIGAE--PNVVLFFDCPEEEMVKRVLNRNQ 168 (234)
T ss_pred CCCeEEecCCcccHHHHHHHHHHhccC--CCEEEEEECCHHHHHHHHHcCcC
Confidence 3569999999888888877665 322 22488999999999999999864
No 52
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=99.18 E-value=3.6e-10 Score=108.48 Aligned_cols=135 Identities=18% Similarity=0.184 Sum_probs=90.0
Q ss_pred EcCCCCcHHHHHHHHHHHcCCCeEEeecchhc------c---CCCC------cHHHHH-HHHHHHHHCCCcEEEecCCCC
Q 007244 26 VGAPGSGKSTFCEHVMRSSARPWARICQDTIN------K---GKSG------TKVQCL-TSASSALKKGKSVFLDRCNLE 89 (611)
Q Consensus 26 vG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~------~---~~~~------~~~~~~-~~~~~~L~~Gk~VIID~tnl~ 89 (611)
+|+|||||||+++.++..++ ...++.|.+. . +... .+...+ ..+...+..+...||.++++.
T Consensus 1 ~G~sGsGKSTla~~la~~l~--~~~~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~s~~~ 78 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLH--AAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFAMQRTNKVSLIVCSALK 78 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhC--CeEEeCccCCchhhhccccCCCCCChhhHHHHHHHHHHHHHHHHHcCCceEEEEecch
Confidence 59999999999999999988 4557777642 1 1111 121222 222233334444334488887
Q ss_pred HHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhccCCCccCCccEEEEcCChhhH
Q 007244 90 REQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQNENDV 169 (611)
Q Consensus 90 ~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~e~P~~~EgFd~V~vv~~~~ev 169 (611)
+..|..+ +..+..+.+|++++|.++|.+|+..|..+ ....+++..+...+++|...|. .++.++....+
T Consensus 79 ~~~r~~~---~~~~~~~~~v~l~a~~~~l~~Rl~~R~~~------~a~~~vl~~Q~~~~ep~~~~e~--~~~~id~~~~~ 147 (163)
T PRK11545 79 KHYRDLL---REGNPNLSFIYLKGDFDVIESRLKARKGH------FFKTQMLVTQFETLQEPGADET--DVLVVDIDQPL 147 (163)
T ss_pred HHHHHHH---HccCCCEEEEEEECCHHHHHHHHHhccCC------CCCHHHHHHHHHHcCCCCCCCC--CEEEEeCCCCH
Confidence 7777555 45667789999999999999999999864 1367788999988998876663 44555544444
Q ss_pred HHHH
Q 007244 170 QAAL 173 (611)
Q Consensus 170 d~av 173 (611)
++++
T Consensus 148 ~~~~ 151 (163)
T PRK11545 148 EGVV 151 (163)
T ss_pred HHHH
Confidence 4433
No 53
>PRK14528 adenylate kinase; Provisional
Probab=99.17 E-value=4.8e-10 Score=109.87 Aligned_cols=149 Identities=19% Similarity=0.267 Sum_probs=94.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh-cc------------------CCCCcHHHHHHHHHHHHHC---CC
Q 007244 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-NK------------------GKSGTKVQCLTSASSALKK---GK 79 (611)
Q Consensus 22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i-~~------------------~~~~~~~~~~~~~~~~L~~---Gk 79 (611)
.|++.|+|||||||+|+.+++.++. .+++.+++ +. +...+.......+.+.+.. ..
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~--~~is~~~~lr~~~~~~~~~g~~~~~~~~~g~lvp~~~~~~~~~~~l~~~~~~~ 80 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSI--PQISTGDILREAVKNQTAMGIEAKRYMDAGDLVPDSVVIGIIKDRIREADCKN 80 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC--CeeeCCHHHHHHhhcCCHHHHHHHHHHhCCCccCHHHHHHHHHHHHhCcCccC
Confidence 4889999999999999999999984 45665555 21 1111222223455555544 34
Q ss_pred cEEEecCCCCHHHHHHHHHh-CCCCC-eEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhc--cCCCc--
Q 007244 80 SVFLDRCNLEREQRTDFVKL-GGPEV-DVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKK--ELPKL-- 153 (611)
Q Consensus 80 ~VIID~tnl~~~~R~~~~~l-~~~~~-~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~--e~P~~-- 153 (611)
.+|||+.+.+..+...+..+ ...+. .-.+|+|++|.+++.+|+..|....+ +.++.++.+.+|+.... ..|..
T Consensus 81 g~viDG~Pr~~~qa~~l~~~~~~~~~~~d~vI~Ld~~~~~~~~Rl~~R~~~~g-r~dd~~e~i~~Rl~~y~~~~~pv~~~ 159 (186)
T PRK14528 81 GFLLDGFPRTVEQADALDALLKNEGKSIDKAINLEVPDGELLKRLLGRAEIEG-RADDNEATIKNRLDNYNKKTLPLLDF 159 (186)
T ss_pred cEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCccccC-CCCCCHHHHHHHHHHHHHHhHHHHHH
Confidence 59999988888888877766 43332 33688999999999999999976433 44566676666664332 22322
Q ss_pred cCCccEEEEcCChhhHHHHH
Q 007244 154 SEGFSRITLCQNENDVQAAL 173 (611)
Q Consensus 154 ~EgFd~V~vv~~~~evd~av 173 (611)
++.-..++.++....++++.
T Consensus 160 y~~~~~~~~i~~~~~~~~v~ 179 (186)
T PRK14528 160 YAAQKKLSQVNGVGSLEEVT 179 (186)
T ss_pred HHhCCCEEEEECCCCHHHHH
Confidence 11112355555555555443
No 54
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=99.16 E-value=6.2e-10 Score=108.73 Aligned_cols=140 Identities=15% Similarity=0.173 Sum_probs=83.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhc----------------------cCCCC-cHHH------HHH
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN----------------------KGKSG-TKVQ------CLT 69 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~----------------------~~~~~-~~~~------~~~ 69 (611)
|..+++|+||+||||||+++.|+...+..+.......-+ .+.+. .|.. ...
T Consensus 1 ~g~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~yg~~~ 80 (186)
T PRK10078 1 MGKLIWLMGPSGSGKDSLLAALRQREQTQLLVAHRYITRPASAGSENHIALSEQEFFTRAGQNLFALSWHANGLYYGVGI 80 (186)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCCCeEEEcCEECCCccchhHHhheeEcHHHHHHHHHCCchhhHHHHhCCccCCcH
Confidence 356899999999999999999988765433222111000 01110 1100 002
Q ss_pred HHHHHHHCCCcEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhc
Q 007244 70 SASSALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKK 148 (611)
Q Consensus 70 ~~~~~L~~Gk~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~ 148 (611)
.+.+.+..|..||++++ +..+..+ +..+..+.+|++++|.+++.+|+..|.+ ..++++..|+.+..
T Consensus 81 ~~~~~l~~g~~VI~~G~------~~~~~~~~~~~~~~~~vi~l~~s~e~l~~RL~~R~~-------~~~~~i~~rl~r~~ 147 (186)
T PRK10078 81 EIDLWLHAGFDVLVNGS------RAHLPQARARYQSALLPVCLQVSPEILRQRLENRGR-------ENASEINARLARAA 147 (186)
T ss_pred HHHHHHhCCCEEEEeCh------HHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHHhCC-------CCHHHHHHHHHHhh
Confidence 46677889999999884 4433334 3344566788999999999999998864 23455555553321
Q ss_pred cCCCccCCccEEEEcCChhhHHHHHHHh
Q 007244 149 ELPKLSEGFSRITLCQNENDVQAALDTY 176 (611)
Q Consensus 149 e~P~~~EgFd~V~vv~~~~evd~av~~~ 176 (611)
. .+.++.+++. +...+++++..+
T Consensus 148 ---~-~~~ad~~vi~-~~~s~ee~~~~i 170 (186)
T PRK10078 148 ---R-YQPQDCHTLN-NDGSLRQSVDTL 170 (186)
T ss_pred ---h-hccCCEEEEe-CCCCHHHHHHHH
Confidence 1 2235545555 334455555443
No 55
>PRK13808 adenylate kinase; Provisional
Probab=99.16 E-value=5.3e-10 Score=118.64 Aligned_cols=151 Identities=13% Similarity=0.205 Sum_probs=94.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcCCCeEEeecch-hcc------------------CCCCcHHHHHHHHHHHHHCC---Cc
Q 007244 23 VIMVGAPGSGKSTFCEHVMRSSARPWARICQDT-INK------------------GKSGTKVQCLTSASSALKKG---KS 80 (611)
Q Consensus 23 IvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~-i~~------------------~~~~~~~~~~~~~~~~L~~G---k~ 80 (611)
|+|+|||||||||+++.|++.++ +.+|+.++ |+. +...+.+.+...+.+.|... ..
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~yg--l~~is~gdlLR~~i~~~s~~g~~~~~~~~~G~lVPdeiv~~li~e~l~~~~~~~G 80 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQYG--IVQLSTGDMLRAAVAAGTPVGLKAKDIMASGGLVPDEVVVGIISDRIEQPDAANG 80 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC--CceecccHHHHHHhhcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHhcccccCC
Confidence 78899999999999999999998 55677543 331 22233334445555666433 46
Q ss_pred EEEecCCCCHHHHHHHHHh-CCCCCeE-EEEEEeCCHHHHHHHHHhcccc-----cCCCCCCCHHHHHHHHHhh--ccCC
Q 007244 81 VFLDRCNLEREQRTDFVKL-GGPEVDV-HAVVLDLPAKLCISRSVKRIEH-----EGNLQGGKAAAVVNRMLQK--KELP 151 (611)
Q Consensus 81 VIID~tnl~~~~R~~~~~l-~~~~~~v-~vV~Ld~p~e~~~~Rl~~R~~~-----~g~~~~~vpeevi~rm~~~--~e~P 151 (611)
||||+.+.+..|.+.+..+ ...+..+ .+|+|++|.+++++|+..|... ...+.++.++.+.+|+... ...|
T Consensus 81 ~ILDGFPRt~~QA~~L~~ll~~~gi~PDlVI~LDVp~evll~Rl~~R~~~~~~rg~~~R~DD~~E~i~kRL~~Y~~~t~P 160 (333)
T PRK13808 81 FILDGFPRTVPQAEALDALLKDKQLKLDAVVELRVNEGALLARVETRVAEMRARGEEVRADDTPEVLAKRLASYRAQTEP 160 (333)
T ss_pred EEEeCCCCCHHHHHHHHHHHHhcCCCcCeEEEEECCHHHHHHHHHcCcccccccCCccCCCCCHHHHHHHHHHHHHHhHH
Confidence 9999999888888877665 4444333 5889999999999999988421 0113344555555555321 1122
Q ss_pred Cc--cCCccEEEEcCChhhHHHHHHH
Q 007244 152 KL--SEGFSRITLCQNENDVQAALDT 175 (611)
Q Consensus 152 ~~--~EgFd~V~vv~~~~evd~av~~ 175 (611)
.. ++.-..++.++....++++...
T Consensus 161 Ll~~Y~e~~~lv~IDa~~siEEV~ee 186 (333)
T PRK13808 161 LVHYYSEKRKLLTVDGMMTIDEVTRE 186 (333)
T ss_pred HHHHhhccCcEEEEECCCCHHHHHHH
Confidence 21 1211245666655555555443
No 56
>PRK14529 adenylate kinase; Provisional
Probab=99.15 E-value=3.9e-10 Score=113.77 Aligned_cols=104 Identities=17% Similarity=0.191 Sum_probs=76.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcCCCeEEeec-chhcc------------------CCCCcHHHHHHHHHHHHHC--CCcE
Q 007244 23 VIMVGAPGSGKSTFCEHVMRSSARPWARICQ-DTINK------------------GKSGTKVQCLTSASSALKK--GKSV 81 (611)
Q Consensus 23 IvLvG~PGSGKST~A~~L~~~~~~~~~~Is~-D~i~~------------------~~~~~~~~~~~~~~~~L~~--Gk~V 81 (611)
|+|.|+|||||||+++.|++.++.. +++. |.+++ +...+.+.+...+.++|.. ...+
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~--~is~gdllr~~i~~~t~lg~~i~~~i~~G~lvpdei~~~lv~~~l~~~~~~g~ 80 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLA--HIESGAIFREHIGGGTELGKKAKEYIDRGDLVPDDITIPMILETLKQDGKNGW 80 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCC--CcccchhhhhhccCCChHHHHHHHHHhccCcchHHHHHHHHHHHHhccCCCcE
Confidence 7889999999999999999999844 4653 33322 2222333344666777754 3569
Q ss_pred EEecCCCCHHHHHHHHHh-CCCCCeE-EEEEEeCCHHHHHHHHHhcccc
Q 007244 82 FLDRCNLEREQRTDFVKL-GGPEVDV-HAVVLDLPAKLCISRSVKRIEH 128 (611)
Q Consensus 82 IID~tnl~~~~R~~~~~l-~~~~~~v-~vV~Ld~p~e~~~~Rl~~R~~~ 128 (611)
|+|+++.+..|...+..+ ...+..+ .+|+|++|.+++.+|+..|..+
T Consensus 81 iLDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~~~~~~l~~Rl~~R~~c 129 (223)
T PRK14529 81 LLDGFPRNKVQAEKLWEALQKEGMKLDYVIEILLPREVAKNRIMGRRLC 129 (223)
T ss_pred EEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHhhCCccc
Confidence 999999999999988765 4444332 5889999999999999999644
No 57
>PRK02496 adk adenylate kinase; Provisional
Probab=99.13 E-value=8.2e-10 Score=107.31 Aligned_cols=146 Identities=20% Similarity=0.241 Sum_probs=91.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh-c------------------cCCCCcHHHHHHHHHHHHHC---CC
Q 007244 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-N------------------KGKSGTKVQCLTSASSALKK---GK 79 (611)
Q Consensus 22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i-~------------------~~~~~~~~~~~~~~~~~L~~---Gk 79 (611)
-|+|.|+|||||||+|+.|++.++ +.+++.+++ + .+...+.+.....+...+.. ..
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~--~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~ 80 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLH--IPHISTGDILRQAIKEQTPLGIKAQGYMDKGELVPDQLVLDLVQERLQQPDAAN 80 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--CcEEEhHHHHHHHHhccChhHHHHHHHHHCCCccCHHHHHHHHHHHHhCcCccC
Confidence 378899999999999999999988 445765433 2 12222223333555566653 34
Q ss_pred cEEEecCCCCHHHHHHHHHh-CCCC-CeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhccC---CC--
Q 007244 80 SVFLDRCNLEREQRTDFVKL-GGPE-VDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKEL---PK-- 152 (611)
Q Consensus 80 ~VIID~tnl~~~~R~~~~~l-~~~~-~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~e~---P~-- 152 (611)
.+|||+.+.+..+...+..+ ...+ ....+|+|++|.+++.+|+..|.+. +..++.+.+....|.. |.
T Consensus 81 g~vldGfPr~~~q~~~l~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~------dd~~~~~~~r~~~y~~~~~~v~~ 154 (184)
T PRK02496 81 GWILDGFPRKVTQAAFLDELLQEIGQSGERVVNLDVPDDVVVERLLARGRK------DDTEEVIRRRLEVYREQTAPLID 154 (184)
T ss_pred CEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcCCCC------CCCHHHHHHHHHHHHHHHHHHHH
Confidence 69999998888777666554 3333 2346899999999999999999653 2344555554444322 21
Q ss_pred ccCCccEEEEcCChhhHHHHHHH
Q 007244 153 LSEGFSRITLCQNENDVQAALDT 175 (611)
Q Consensus 153 ~~EgFd~V~vv~~~~evd~av~~ 175 (611)
..+.-..++.++....++++...
T Consensus 155 ~~~~~~~~~~Ida~~~~~~V~~~ 177 (184)
T PRK02496 155 YYRDRQKLLTIDGNQSVEAVTTE 177 (184)
T ss_pred HHHhcCCEEEEECCCCHHHHHHH
Confidence 11111235566666666665544
No 58
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=99.13 E-value=3.9e-10 Score=106.63 Aligned_cols=101 Identities=26% Similarity=0.326 Sum_probs=77.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchhccC----C-CC--cHHHH----HHHHHHHHHCCCcEEEecCC
Q 007244 22 LVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKG----K-SG--TKVQC----LTSASSALKKGKSVFLDRCN 87 (611)
Q Consensus 22 LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D~i~~~----~-~~--~~~~~----~~~~~~~L~~Gk~VIID~tn 87 (611)
+|+|+|+|||||||+|+.+...+ +.....++.|.++.. . +. .+.+. ...+...+..|..||+|.++
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~~l~~~~~~~~~~~~~~~~~~~~~a~~l~~~G~~VIid~~~ 80 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRHGLNKDLGFSREDREENIRRIAEVAKLLADAGLIVIAAFIS 80 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHHhhhhccCCCcchHHHHHHHHHHHHHHHHhCCCEEEEccCC
Confidence 48999999999999999999887 444567888877631 1 11 11121 23344566789999999999
Q ss_pred CCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHh
Q 007244 88 LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVK 124 (611)
Q Consensus 88 l~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~ 124 (611)
..+..|..+..+ . +..+.++++++|.++|.+|..+
T Consensus 81 ~~~~~R~~~~~l~~--~~~~~~i~l~~~~e~~~~R~~~ 116 (149)
T cd02027 81 PYREDREAARKIIG--GGDFLEVFVDTPLEVCEQRDPK 116 (149)
T ss_pred CCHHHHHHHHHhcC--CCCEEEEEEeCCHHHHHHhCch
Confidence 999999888887 5 6778899999999999999644
No 59
>PRK06217 hypothetical protein; Validated
Probab=99.12 E-value=8.9e-10 Score=107.35 Aligned_cols=97 Identities=19% Similarity=0.145 Sum_probs=69.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccC-------CCCcHHHHHHHHHHHHHCCCcEEEecCCCCHHHHH
Q 007244 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKG-------KSGTKVQCLTSASSALKKGKSVFLDRCNLEREQRT 94 (611)
Q Consensus 22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~-------~~~~~~~~~~~~~~~L~~Gk~VIID~tnl~~~~R~ 94 (611)
.|+|+|+|||||||+|++|++.++.+ +++.|.+... ...+.+.....+.+.+..+..+|||+.... . +.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~--~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~G~~~~-~-~~ 78 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIP--HLDTDDYFWLPTDPPFTTKRPPEERLRLLLEDLRPREGWVLSGSALG-W-GD 78 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCc--EEEcCceeeccCCCCccccCCHHHHHHHHHHHHhcCCCEEEEccHHH-H-HH
Confidence 49999999999999999999999854 5888777421 122334445666667777788999984422 1 11
Q ss_pred HHHHhCCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244 95 DFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (611)
Q Consensus 95 ~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~ 127 (611)
... ...+. +|||++|.+++.+|+..|..
T Consensus 79 ~~~--~~~d~---~i~Ld~~~~~~~~Rl~~R~~ 106 (183)
T PRK06217 79 PLE--PLFDL---VVFLTIPPELRLERLRLREF 106 (183)
T ss_pred HHH--hhCCE---EEEEECCHHHHHHHHHcCcc
Confidence 111 33343 78999999999999999974
No 60
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=99.10 E-value=5.8e-10 Score=108.79 Aligned_cols=132 Identities=13% Similarity=0.193 Sum_probs=84.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEE-e--------------------ecchh----ccCCCCcHHH--------
Q 007244 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWAR-I--------------------CQDTI----NKGKSGTKVQ-------- 66 (611)
Q Consensus 20 p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~-I--------------------s~D~i----~~~~~~~~~~-------- 66 (611)
+.+|+|+|||||||+|+++.|.+.++..+.. + +.+.+ ..+.+.++..
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r~~e~~g~dy~fvs~~ef~~~i~~g~fve~~~~~g~~YGt 81 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHFVSREEFEDDIKSGLFLEWGEYSGNYYGT 81 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcCCcceEeeeeecCCCCCCCCcCCceEEECCHHHHHHHHHcCCeEEEEEEcCcCccc
Confidence 4689999999999999999999886422211 1 11111 1122222111
Q ss_pred HHHHHHHHHHCCCcEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEe-CCHHHHHHHHHhcccccCCCCCCCHHHHHHHH
Q 007244 67 CLTSASSALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLD-LPAKLCISRSVKRIEHEGNLQGGKAAAVVNRM 144 (611)
Q Consensus 67 ~~~~~~~~L~~Gk~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld-~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm 144 (611)
-...+...+..|+.+|+|. ....+..+ +. ...+.+||+. ++.+++.+|+.+|.. +.++.+-+|+
T Consensus 82 ~~~~i~~~~~~~~~~ild~------~~~~~~~l~~~-~~~~~vIfi~~~s~~~l~~rl~~R~~-------~~~~~i~~rl 147 (184)
T smart00072 82 SKETIRQVAEQGKHCLLDI------DPQGVKQLRKA-QLYPIVIFIAPPSSEELERRLRGRGT-------ETAERIQKRL 147 (184)
T ss_pred CHHHHHHHHHcCCeEEEEE------CHHHHHHHHHh-CCCcEEEEEeCcCHHHHHHHHHhcCC-------CCHHHHHHHH
Confidence 1146788888999999999 45555555 33 3344577775 667889999999876 3556666666
Q ss_pred HhhccCCCccCCccEEEEcCC
Q 007244 145 LQKKELPKLSEGFSRITLCQN 165 (611)
Q Consensus 145 ~~~~e~P~~~EgFd~V~vv~~ 165 (611)
.....+......||.++.+++
T Consensus 148 ~~a~~~~~~~~~fd~~I~n~~ 168 (184)
T smart00072 148 AAAQKEAQEYHLFDYVIVNDD 168 (184)
T ss_pred HHHHHHHhhhccCCEEEECcC
Confidence 655333333355898888864
No 61
>PLN02459 probable adenylate kinase
Probab=99.10 E-value=1.7e-09 Score=111.27 Aligned_cols=103 Identities=17% Similarity=0.220 Sum_probs=76.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh-c------------------cCCCCcHHHHHHHHHHHHHC----
Q 007244 21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-N------------------KGKSGTKVQCLTSASSALKK---- 77 (611)
Q Consensus 21 ~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i-~------------------~~~~~~~~~~~~~~~~~L~~---- 77 (611)
..|+|+|+|||||||+|+.|++.++ +.+|+...+ + .|...+.+-+...+.+.|..
T Consensus 30 ~~ii~~G~PGsGK~T~a~~la~~~~--~~~is~gdllR~ei~~~t~lg~~i~~~~~~G~lVPdeiv~~ll~~~l~~~~~~ 107 (261)
T PLN02459 30 VNWVFLGCPGVGKGTYASRLSKLLG--VPHIATGDLVREEIKSSGPLGAQLKEIVNQGKLVPDEIIFSLLSKRLEAGEEE 107 (261)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC--CcEEeCcHHHHHHHhccchhHHHHHHHHHcCCccCHHHHHHHHHHHHhccccc
Confidence 4477789999999999999999998 556764333 2 23444444555777777764
Q ss_pred -CCcEEEecCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccc
Q 007244 78 -GKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEH 128 (611)
Q Consensus 78 -Gk~VIID~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~ 128 (611)
...+|||+++.+..|...+-.+. . .-.+|+|++|.+++.+|+..|...
T Consensus 108 ~~~g~iLDGFPRt~~Qa~~Le~~~--~-id~Vi~L~v~d~~l~~Rl~gR~~~ 156 (261)
T PLN02459 108 GESGFILDGFPRTVRQAEILEGVT--D-IDLVVNLKLREEVLVEKCLGRRIC 156 (261)
T ss_pred CCceEEEeCCCCCHHHHHHHHhcC--C-CCEEEEEECCHHHHHHHhhccccc
Confidence 25699999999998888775441 1 234889999999999999999653
No 62
>cd02905 Macro_GDAP2_like Macro domain, GDAP2_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family contains proteins similar to human GDAP2, the ganglioside induced differentiation associated protein 2, whose gene is expressed at a higher level in differentiated Neuro2a cells compared with non-differentiated cells. GDAP2 contains an N-terminal macro domain and a C-terminal
Probab=99.10 E-value=3.8e-11 Score=112.74 Aligned_cols=105 Identities=9% Similarity=0.005 Sum_probs=80.6
Q ss_pred CCchhhhhhHHHHHHhhcCCCCCCCCCCCCCCCCCCcccccccccccccceeeccccccccc-ccCCCCcchhhhcccCC
Q 007244 194 NPDAKIQLGIMKFLKKVDAPSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGEE-VKGTENPEVASVNQNGS 272 (611)
Q Consensus 194 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~~ 272 (611)
+.....++.++..+++.+.- ..+++ . .|.++++.|.++-|.+.|.|...... ....+...-.+|+.++.
T Consensus 35 aI~~aaG~~l~~e~~~~~~~---~~G~~-----~--~T~~~~L~~k~VIH~vgP~~~~~~~~~~~~~L~~~~~~~L~~a~ 104 (140)
T cd02905 35 KIFARAGSELREEIQTLGGC---RTGEA-----K--LTKGYNLPARFIIHTVGPKYNVKYRTAAENALYSCYRNVLQLAK 104 (140)
T ss_pred HHHHHhCHHHHHHHHHhCCC---CCCcE-----E--EecCCCCCccEEEEecCCccCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 44555677888888776541 22333 1 47788999999999999999862211 12333345566789999
Q ss_pred CCCCCccccccCccCCCCCChHHHHHHHHHHHHHHH
Q 007244 273 SSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFV 308 (611)
Q Consensus 273 ~~~~~SiAfPaIStGi~gfP~~~aa~Iiv~tv~~f~ 308 (611)
+.+++|||||+||||+||||.++||+|++++|++|+
T Consensus 105 ~~~~~SIAfPai~tG~~gfP~~~aa~i~l~~v~~~l 140 (140)
T cd02905 105 ELGLESIALCVISSEKRNYPPEAAAHIALRTVRRFL 140 (140)
T ss_pred HcCCCEEEECCcccCCCCCCHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999985
No 63
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=99.08 E-value=1.2e-09 Score=104.37 Aligned_cols=103 Identities=22% Similarity=0.265 Sum_probs=75.4
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchhccCCCC----cH---H----HHHHHHHHHHHCCCcEEEe
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGKSG----TK---V----QCLTSASSALKKGKSVFLD 84 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D~i~~~~~~----~~---~----~~~~~~~~~L~~Gk~VIID 84 (611)
+|.+|+|+|+|||||||+|++|.+.+ +.....++.|.++.+... .. . ++...+.....+|..||+.
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l~~dl~fs~~dR~e~~rr~~~~A~ll~~~G~ivIva 80 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGLNADLGFSKEDREENIRRIAEVAKLLADQGIIVIVA 80 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTTTTT--SSHHHHHHHHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEe
Confidence 47899999999999999999998765 456788999999865321 11 1 2225556667889999999
Q ss_pred cCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHH
Q 007244 85 RCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSV 123 (611)
Q Consensus 85 ~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~ 123 (611)
.....++.|...+.+ ... .+..||+++|.++|.+|..
T Consensus 81 ~isp~~~~R~~~R~~~~~~--~f~eVyv~~~~e~~~~RD~ 118 (156)
T PF01583_consen 81 FISPYREDREWARELIPNE--RFIEVYVDCPLEVCRKRDP 118 (156)
T ss_dssp ----SHHHHHHHHHHHHTT--EEEEEEEES-HHHHHHHTT
T ss_pred eccCchHHHHHHHHhCCcC--ceEEEEeCCCHHHHHHhCc
Confidence 999999999998888 433 5678999999999999963
No 64
>PRK14738 gmk guanylate kinase; Provisional
Probab=99.06 E-value=1.5e-09 Score=108.13 Aligned_cols=146 Identities=13% Similarity=0.134 Sum_probs=86.2
Q ss_pred cCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCC--------------------eEEeecchh----ccCCCCcHHH----H
Q 007244 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARP--------------------WARICQDTI----NKGKSGTKVQ----C 67 (611)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~--------------------~~~Is~D~i----~~~~~~~~~~----~ 67 (611)
.+..+.+|+|+|||||||||+++.|.+..... |..++.+.+ ..+.+..+.+ .
T Consensus 9 ~~~~~~~ivi~GpsG~GK~tl~~~L~~~~~~~~~~~~~ttr~~r~~e~~g~~y~fv~~~~f~~~~~~~~~le~~~~~g~~ 88 (206)
T PRK14738 9 KPAKPLLVVISGPSGVGKDAVLARMRERKLPFHFVVTATTRPKRPGEIDGVDYHFVTPEEFREMISQNELLEWAEVYGNY 88 (206)
T ss_pred CCCCCeEEEEECcCCCCHHHHHHHHHhcCCcccccccccCCCCCCCCCCCCeeeeCCHHHHHHHHHcCCcEEEEEEcCce
Confidence 66788999999999999999999997642111 111222221 1223332211 1
Q ss_pred H----HHHHHHHHCCCcEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHH
Q 007244 68 L----TSASSALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVN 142 (611)
Q Consensus 68 ~----~~~~~~L~~Gk~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~ 142 (611)
+ ..+...++.|+.+|+|. ..+....+ +..+..+.++.++++.+++.+|+.+|..+ .++++..
T Consensus 89 YGt~~~~i~~~~~~g~~vi~~~------~~~g~~~l~~~~pd~~~if~~pps~e~l~~Rl~~R~~~-------~~~~~~~ 155 (206)
T PRK14738 89 YGVPKAPVRQALASGRDVIVKV------DVQGAASIKRLVPEAVFIFLAPPSMDELTRRLELRRTE-------SPEELER 155 (206)
T ss_pred ecCCHHHHHHHHHcCCcEEEEc------CHHHHHHHHHhCCCeEEEEEeCCCHHHHHHHHHHcCCC-------CHHHHHH
Confidence 1 46788899999999987 23343334 32332233344456788999999999763 3456667
Q ss_pred HHHhhccCCCccCCccEEEEcCChhhHHHHHHH
Q 007244 143 RMLQKKELPKLSEGFSRITLCQNENDVQAALDT 175 (611)
Q Consensus 143 rm~~~~e~P~~~EgFd~V~vv~~~~evd~av~~ 175 (611)
|+...+.+....+.|+.+++. ..++++++...
T Consensus 156 Rl~~~~~e~~~~~~~~~~iId-~~~~~e~v~~~ 187 (206)
T PRK14738 156 RLATAPLELEQLPEFDYVVVN-PEDRLDEAVAQ 187 (206)
T ss_pred HHHHHHHHHhcccCCCEEEEC-CCCCHHHHHHH
Confidence 766655433333446655544 33445555443
No 65
>PRK14526 adenylate kinase; Provisional
Probab=99.05 E-value=3.5e-09 Score=106.06 Aligned_cols=101 Identities=17% Similarity=0.273 Sum_probs=72.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh-cc------------------CCCCcHHHHHHHHHHHHHC---CCc
Q 007244 23 VIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-NK------------------GKSGTKVQCLTSASSALKK---GKS 80 (611)
Q Consensus 23 IvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i-~~------------------~~~~~~~~~~~~~~~~L~~---Gk~ 80 (611)
|+|+|+|||||||+++.+++.++ +.+++.+.+ +. +...+.+.+...+.+.|.. ...
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~~--~~~is~G~llr~~~~~~t~~g~~i~~~~~~g~lvpd~~~~~lv~~~l~~~~~~~g 80 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNELN--YYHISTGDLFRENILNSTPLGKEIKQIVENGQLVPDSITIKIVEDKINTIKNNDN 80 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC--CceeecChHHHHhcccCChhhHHHHHHHHcCccCChHHHHHHHHHHHhcccccCc
Confidence 77899999999999999999888 445764443 21 2222222333556666653 456
Q ss_pred EEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccccc
Q 007244 81 VFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHE 129 (611)
Q Consensus 81 VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~ 129 (611)
+|||+.+.+..+...+... .. ..+++|++|.+++.+|+..|..++
T Consensus 81 ~ilDGfPR~~~Qa~~l~~~~~~----~~vi~l~~~~~~~~~Rl~~R~~~~ 126 (211)
T PRK14526 81 FILDGFPRNINQAKALDKFLPN----IKIINFLIDEELLIKRLSGRRICK 126 (211)
T ss_pred EEEECCCCCHHHHHHHHHhcCC----CEEEEEECCHHHHHHHHHCCCccc
Confidence 9999999888888777554 22 246788999999999999997543
No 66
>PRK08118 topology modulation protein; Reviewed
Probab=99.05 E-value=1.1e-09 Score=105.68 Aligned_cols=96 Identities=24% Similarity=0.376 Sum_probs=64.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhc--cCCCC-cHHHHHHHHHHHHHCCCcEEEecCCCCHHHHHHHHH
Q 007244 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN--KGKSG-TKVQCLTSASSALKKGKSVFLDRCNLEREQRTDFVK 98 (611)
Q Consensus 22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~--~~~~~-~~~~~~~~~~~~L~~Gk~VIID~tnl~~~~R~~~~~ 98 (611)
-|+++|+|||||||+|++|.+.++.++ ++.|.+. .++.. ..+++...+.+ +..+..+|+|+. +.......+
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~--~~lD~l~~~~~w~~~~~~~~~~~~~~-~~~~~~wVidG~-~~~~~~~~l-- 76 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPV--HHLDALFWKPNWEGVPKEEQITVQNE-LVKEDEWIIDGN-YGGTMDIRL-- 76 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCc--eecchhhcccCCcCCCHHHHHHHHHH-HhcCCCEEEeCC-cchHHHHHH--
Confidence 389999999999999999999999655 5556553 33333 22333344444 445578999994 332221111
Q ss_pred hCCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244 99 LGGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (611)
Q Consensus 99 l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~ 127 (611)
...+ .+|+|++|.++|..|+.+|..
T Consensus 77 -~~~d---~vi~Ld~p~~~~~~R~~~R~~ 101 (167)
T PRK08118 77 -NAAD---TIIFLDIPRTICLYRAFKRRV 101 (167)
T ss_pred -HhCC---EEEEEeCCHHHHHHHHHHHHH
Confidence 2223 389999999999999999954
No 67
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=99.04 E-value=4.9e-09 Score=102.38 Aligned_cols=146 Identities=18% Similarity=0.235 Sum_probs=95.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccC-------------------CCCcHHHHHHHHHHHHHCCC---
Q 007244 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKG-------------------KSGTKVQCLTSASSALKKGK--- 79 (611)
Q Consensus 22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~-------------------~~~~~~~~~~~~~~~L~~Gk--- 79 (611)
-|+++|+|||||||+|++|++.++ +.|++.+.+... ...+..-....+..++....
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~--i~hlstgd~~r~~~~~~t~lg~~~k~~i~~g~lv~d~i~~~~v~~rl~~~d~~~ 79 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG--LPHLDTGDILRAAIAERTELGEEIKKYIDKGELVPDEIVNGLVKERLDEADCKA 79 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC--CcEEcHhHHhHhhhccCChHHHHHHHHHHcCCccchHHHHHHHHHHHHhhcccC
Confidence 389999999999999999999977 667997665321 11122222245555555532
Q ss_pred cEEEecCCCCHHHHHHHHHh-CCCCC-eEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhc--cCCCccC
Q 007244 80 SVFLDRCNLEREQRTDFVKL-GGPEV-DVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKK--ELPKLSE 155 (611)
Q Consensus 80 ~VIID~tnl~~~~R~~~~~l-~~~~~-~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~--e~P~~~E 155 (611)
.+|+|+.+.+..+-..+.++ ...+. .-.++.++.+.+.+..|+..|.. +.++.++.+.+|+.... ..|. .+
T Consensus 80 ~~I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~~~~~~~~~~~~r~~~r~~----r~dd~~~~~~~R~~~y~~~~~pl-i~ 154 (178)
T COG0563 80 GFILDGFPRTLCQARALKRLLKELGVRLDMVIELDVPEELLLERLLGRRV----REDDNEETVKKRLKVYHEQTAPL-IE 154 (178)
T ss_pred eEEEeCCCCcHHHHHHHHHHHHHcCCCcceEEeeeCCHHHHHHHHhCccc----cccCCHHHHHHHHHHHHhcccch-hh
Confidence 69999988888777766666 44443 23688899999999999999964 22355666655555432 2222 23
Q ss_pred CccEEEEcCChhhHHHHHHHh
Q 007244 156 GFSRITLCQNENDVQAALDTY 176 (611)
Q Consensus 156 gFd~V~vv~~~~evd~av~~~ 176 (611)
-|. +.++...+++++...+
T Consensus 155 ~y~--~~id~~~~i~~v~~~i 173 (178)
T COG0563 155 YYS--VTIDGSGEIEEVLADI 173 (178)
T ss_pred hhe--eeccCCCCHHHHHHHH
Confidence 333 5566666777666544
No 68
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=99.04 E-value=1.9e-09 Score=104.15 Aligned_cols=124 Identities=21% Similarity=0.286 Sum_probs=78.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhcc--------------CCCCcHHHHHHHHHHHHHCCCcEEEec--
Q 007244 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK--------------GKSGTKVQCLTSASSALKKGKSVFLDR-- 85 (611)
Q Consensus 22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~--------------~~~~~~~~~~~~~~~~L~~Gk~VIID~-- 85 (611)
-|+|+|++||||||+++.|++.++.+| ++.|.+-. |+..-+..-...+.+.+..+..||--+
T Consensus 4 ~IvLiG~mGaGKSTIGr~LAk~L~~~F--~D~D~~Ie~~~g~sI~eIF~~~GE~~FR~~E~~vl~~l~~~~~~ViaTGGG 81 (172)
T COG0703 4 NIVLIGFMGAGKSTIGRALAKALNLPF--IDTDQEIEKRTGMSIAEIFEEEGEEGFRRLETEVLKELLEEDNAVIATGGG 81 (172)
T ss_pred cEEEEcCCCCCHhHHHHHHHHHcCCCc--ccchHHHHHHHCcCHHHHHHHHhHHHHHHHHHHHHHHHhhcCCeEEECCCc
Confidence 489999999999999999999999776 77776632 111111111234444555553343333
Q ss_pred CCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhccCCCccC
Q 007244 86 CNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSE 155 (611)
Q Consensus 86 tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~e~P~~~E 155 (611)
...+++.|..+ +..+. +|||++|.+++.+|+.....+|. +....|.+.++..++.. .|.+.+
T Consensus 82 ~v~~~enr~~l---~~~g~---vv~L~~~~e~l~~Rl~~~~~RPl-l~~~~~~~~l~~L~~~R-~~~Y~e 143 (172)
T COG0703 82 AVLSEENRNLL---KKRGI---VVYLDAPFETLYERLQRDRKRPL-LQTEDPREELEELLEER-QPLYRE 143 (172)
T ss_pred cccCHHHHHHH---HhCCe---EEEEeCCHHHHHHHhccccCCCc-ccCCChHHHHHHHHHHH-HHHHHH
Confidence 44555666666 55554 99999999999999985444442 44556656566666554 233344
No 69
>PTZ00088 adenylate kinase 1; Provisional
Probab=99.03 E-value=4.9e-09 Score=106.26 Aligned_cols=104 Identities=22% Similarity=0.272 Sum_probs=75.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhcc-------------------CCCCcHHHHHHHHHHHHHC---
Q 007244 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK-------------------GKSGTKVQCLTSASSALKK--- 77 (611)
Q Consensus 20 p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~-------------------~~~~~~~~~~~~~~~~L~~--- 77 (611)
|.-|+|+|+|||||||+|+.|++.++ +.+|+.|.+.. +...+.+.+...+.+.+..
T Consensus 6 ~mrIvl~G~PGsGK~T~a~~La~~~g--~~~is~gdllr~~~~~~t~lg~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~~ 83 (229)
T PTZ00088 6 PLKIVLFGAPGVGKGTFAEILSKKEN--LKHINMGNILREEIKAKTTIGKEIQKVVTSGNLVPDNLVIAIVKDEIAKVTD 83 (229)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC--CcEEECChHHHHHhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhhcc
Confidence 34499999999999999999999998 55687665521 1222223344555555544
Q ss_pred --CCcEEEecCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccc
Q 007244 78 --GKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEH 128 (611)
Q Consensus 78 --Gk~VIID~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~ 128 (611)
+..+|+|+.+.+..++..+... .....+++|++|.+++.+|+..|..+
T Consensus 84 ~~~~g~iLDGfPRt~~Qa~~l~~~---~~~~~vi~l~~~~~~~~~Rl~~Rr~~ 133 (229)
T PTZ00088 84 DCFKGFILDGFPRNLKQCKELGKI---TNIDLFVNIYLPRNILIKKLLGRRIC 133 (229)
T ss_pred ccCceEEEecCCCCHHHHHHHHhc---CCCCEEEEEeCCHHHHHHHHHcCcCC
Confidence 4679999988888888776443 12235889999999999999999653
No 70
>PRK13946 shikimate kinase; Provisional
Probab=99.01 E-value=4e-09 Score=103.00 Aligned_cols=144 Identities=18% Similarity=0.210 Sum_probs=89.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCC-----------c-H-HHH-HHHHHHHHHCCCcEEEe
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG-----------T-K-VQC-LTSASSALKKGKSVFLD 84 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~-----------~-~-~~~-~~~~~~~L~~Gk~VIID 84 (611)
++..|+|+|+|||||||+++.|++.++.++ ++.|.+.....+ . + ... ...+...+..+..||..
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~--id~D~~~~~~~g~~~~e~~~~~ge~~~~~~e~~~l~~l~~~~~~Vi~~ 86 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATMLGLPF--LDADTEIERAARMTIAEIFAAYGEPEFRDLERRVIARLLKGGPLVLAT 86 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCe--ECcCHHHHHHhCCCHHHHHHHHCHHHHHHHHHHHHHHHHhcCCeEEEC
Confidence 456899999999999999999999999555 777765321111 0 0 011 13334444455555555
Q ss_pred c--CCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhccCCCccCCccEEEE
Q 007244 85 R--CNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITL 162 (611)
Q Consensus 85 ~--tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~e~P~~~EgFd~V~v 162 (611)
+ +.+.+..|..+ +..+ ..|||+.|.+++.+|+..|..++- .....+.+.++++.+.+.+ .+.+ ++ +++
T Consensus 87 ggg~~~~~~~r~~l---~~~~---~~v~L~a~~e~~~~Rl~~r~~rp~-~~~~~~~~~i~~~~~~R~~-~y~~-~d-l~i 156 (184)
T PRK13946 87 GGGAFMNEETRAAI---AEKG---ISVWLKADLDVLWERVSRRDTRPL-LRTADPKETLARLMEERYP-VYAE-AD-LTV 156 (184)
T ss_pred CCCCcCCHHHHHHH---HcCC---EEEEEECCHHHHHHHhcCCCCCCc-CCCCChHHHHHHHHHHHHH-HHHh-CC-EEE
Confidence 4 34566666655 3333 378999999999999998876542 1223456778887777653 3233 34 445
Q ss_pred cCChhhHHHHHH
Q 007244 163 CQNENDVQAALD 174 (611)
Q Consensus 163 v~~~~evd~av~ 174 (611)
+.+...+++++.
T Consensus 157 ~~~~~~~~~~~~ 168 (184)
T PRK13946 157 ASRDVPKEVMAD 168 (184)
T ss_pred ECCCCCHHHHHH
Confidence 555545555544
No 71
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=98.99 E-value=4.9e-09 Score=101.98 Aligned_cols=106 Identities=19% Similarity=0.242 Sum_probs=80.4
Q ss_pred cCCCcEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEeecchhccCC-----CCc--HH----HHHHHHHHHHHCCCcE
Q 007244 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINKGK-----SGT--KV----QCLTSASSALKKGKSV 81 (611)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~---~~~~~Is~D~i~~~~-----~~~--~~----~~~~~~~~~L~~Gk~V 81 (611)
..+++.+|+|+|+|||||||+++.+...+. .....++.|.++... +.. .. .+...+...+..|..|
T Consensus 14 ~~~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~V 93 (184)
T TIGR00455 14 NGHRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVRHGLNKDLGFSEEDRKENIRRIGEVAKLFVRNGIIV 93 (184)
T ss_pred hCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHHhhhccccCCCHHHHHHHHHHHHHHHHHHHcCCCEE
Confidence 457789999999999999999999988753 235677888876421 111 11 1224455677899999
Q ss_pred EEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHH
Q 007244 82 FLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSV 123 (611)
Q Consensus 82 IID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~ 123 (611)
|+|+++..+.+|..+..+ ... .+.+|++++|.+++.+|..
T Consensus 94 I~d~~~~~~~~r~~~~~~~~~~--~~~~v~l~~~~e~~~~R~~ 134 (184)
T TIGR00455 94 ITSFISPYRADRQMVRELIEKG--EFIEVFVDCPLEVCEQRDP 134 (184)
T ss_pred EEecCCCCHHHHHHHHHhCcCC--CeEEEEEeCCHHHHHHhCc
Confidence 999999999999888887 544 4678999999999999943
No 72
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.99 E-value=3.1e-09 Score=102.43 Aligned_cols=132 Identities=17% Similarity=0.192 Sum_probs=80.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEe--------------------ecchh----ccCCCCcH--------HHHH
Q 007244 21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARI--------------------CQDTI----NKGKSGTK--------VQCL 68 (611)
Q Consensus 21 ~LIvLvG~PGSGKST~A~~L~~~~~~~~~~I--------------------s~D~i----~~~~~~~~--------~~~~ 68 (611)
.+|+|+||+||||||+++.|.+.++..+..+ +.+.+ ..+.+..+ ....
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~ 81 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGEVDGVDYFFVSKEEFEEMIAAGEFLEWAEVHGNYYGTPK 81 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccCccccccccceeeCCCCCCcCCcEEEEecHHHHHHHHHcCCcEEEEEECCeeeCCcH
Confidence 5899999999999999999998654222111 11111 01111100 0113
Q ss_pred HHHHHHHHCCCcEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhh
Q 007244 69 TSASSALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQK 147 (611)
Q Consensus 69 ~~~~~~L~~Gk~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~ 147 (611)
..+...+..|+.+|+|.+ ...+..+ ........+++++++.+++.+|+..|.. ...+.+..++...
T Consensus 82 ~~i~~~~~~g~~vi~d~~------~~~~~~~~~~~~~~~~i~~~~~~~e~~~~Rl~~r~~-------~~~~~i~~rl~~~ 148 (180)
T TIGR03263 82 SPVEEALAAGKDVLLEID------VQGARQVKKKFPDAVSIFILPPSLEELERRLRKRGT-------DSEEVIERRLAKA 148 (180)
T ss_pred HHHHHHHHCCCeEEEECC------HHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCC-------CCHHHHHHHHHHH
Confidence 567888999999999983 3333334 3333334566667888999999998865 2334455555444
Q ss_pred ccCCCccCCccEEEEcCC
Q 007244 148 KELPKLSEGFSRITLCQN 165 (611)
Q Consensus 148 ~e~P~~~EgFd~V~vv~~ 165 (611)
.+.......||.++.+++
T Consensus 149 ~~~~~~~~~~d~~i~n~~ 166 (180)
T TIGR03263 149 KKEIAHADEFDYVIVNDD 166 (180)
T ss_pred HHHHhccccCcEEEECCC
Confidence 333223445888887754
No 73
>PRK07261 topology modulation protein; Provisional
Probab=98.97 E-value=2.7e-09 Score=103.24 Aligned_cols=98 Identities=19% Similarity=0.238 Sum_probs=69.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhc--cCCCC-cHHHHHHHHHHHHHCCCcEEEecCCCCHHHHHHHHH
Q 007244 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN--KGKSG-TKVQCLTSASSALKKGKSVFLDRCNLEREQRTDFVK 98 (611)
Q Consensus 22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~--~~~~~-~~~~~~~~~~~~L~~Gk~VIID~tnl~~~~R~~~~~ 98 (611)
-|+|+|+|||||||||++|.+.++.++ ++.|.+. .++.. ..++....+...+..+. +|||+++........+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~--i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~-wIidg~~~~~~~~~~l-- 76 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPV--LHLDTLHFQPNWQERDDDDMIADISNFLLKHD-WIIDGNYSWCLYEERM-- 76 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCe--EecCCEEeccccccCCHHHHHHHHHHHHhCCC-EEEcCcchhhhHHHHH--
Confidence 389999999999999999999988554 6666664 22222 33456677777777665 9999965432222222
Q ss_pred hCCCCCeEEEEEEeCCHHHHHHHHHhcccc
Q 007244 99 LGGPEVDVHAVVLDLPAKLCISRSVKRIEH 128 (611)
Q Consensus 99 l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~ 128 (611)
..... +|+|++|..+|..|+.+|..+
T Consensus 77 -~~ad~---vI~Ld~p~~~~~~R~lkR~~~ 102 (171)
T PRK07261 77 -QEADQ---IIFLNFSRFNCLYRAFKRYLK 102 (171)
T ss_pred -HHCCE---EEEEcCCHHHHHHHHHHHHHH
Confidence 22232 899999999999999999653
No 74
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=98.97 E-value=1.1e-08 Score=97.88 Aligned_cols=139 Identities=17% Similarity=0.284 Sum_probs=99.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHHHHHHHHH--HCCCcEEEecCCCCHHHHHHHHHh
Q 007244 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSAL--KKGKSVFLDRCNLEREQRTDFVKL 99 (611)
Q Consensus 22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L--~~Gk~VIID~tnl~~~~R~~~~~l 99 (611)
||+=++.+||||||++..|.+-++. |.||-.|.|... ....+.+.+.+.| .....||+|..|.....|+.++..
T Consensus 1 vlvPIAtiGCGKTTva~aL~~LFg~-wgHvQnDnI~~k---~~~~f~~~~l~~L~~~~~~vViaDRNNh~~reR~ql~~~ 76 (168)
T PF08303_consen 1 VLVPIATIGCGKTTVALALSNLFGE-WGHVQNDNITGK---RKPKFIKAVLELLAKDTHPVVIADRNNHQKRERKQLFED 76 (168)
T ss_pred CEeeecCCCcCHHHHHHHHHHHcCC-CCccccCCCCCC---CHHHHHHHHHHHHhhCCCCEEEEeCCCchHHHHHHHHHH
Confidence 4778999999999999999998875 778999998433 4445667777888 556779999999999999988765
Q ss_pred -CC--C-------CCeEEEEEEeC--CH----HHHHHHHHhccc-ccCCCCCC----CHHHHHHHHHhhccCCCc----c
Q 007244 100 -GG--P-------EVDVHAVVLDL--PA----KLCISRSVKRIE-HEGNLQGG----KAAAVVNRMLQKKELPKL----S 154 (611)
Q Consensus 100 -~~--~-------~~~v~vV~Ld~--p~----e~~~~Rl~~R~~-~~g~~~~~----vpeevi~rm~~~~e~P~~----~ 154 (611)
.. . +..++++.+.. +. +++.+|..+|+. |.+.+.+. ....+++.+.++|++... .
T Consensus 77 ~~~~~~~yl~~~~~~r~VaL~fv~~~~~~~i~~it~~RV~~RGDNHQTika~~~~~~~~~~Im~gFi~rfep~~~~~~pD 156 (168)
T PF08303_consen 77 VSQLKPDYLPYDTNVRFVALNFVHDDDLDEIRRITQDRVLARGDNHQTIKADSKDEKKVEGIMEGFIKRFEPVDPDREPD 156 (168)
T ss_pred HHHhcccccccCCCeEEEEEEccCCCCHHHHHHHHHHHHHhcCcCcceeecCCCCHHHHHHHHHHHHHhcCCCCCCCCCc
Confidence 22 1 22333333322 23 568899999985 44443322 346788888899987554 4
Q ss_pred CCccEEEEcC
Q 007244 155 EGFSRITLCQ 164 (611)
Q Consensus 155 EgFd~V~vv~ 164 (611)
.+||.|+-++
T Consensus 157 ~~FD~vI~L~ 166 (168)
T PF08303_consen 157 SGFDHVIDLD 166 (168)
T ss_pred cccCEeEeCc
Confidence 5799887664
No 75
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=98.96 E-value=8.5e-09 Score=97.13 Aligned_cols=98 Identities=19% Similarity=0.300 Sum_probs=70.9
Q ss_pred EEcCCCCcHHHHHHHHHHHcCCCeEEeecchh-------------------ccCCCCcHHHHHHHHHHHHHCC---CcEE
Q 007244 25 MVGAPGSGKSTFCEHVMRSSARPWARICQDTI-------------------NKGKSGTKVQCLTSASSALKKG---KSVF 82 (611)
Q Consensus 25 LvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i-------------------~~~~~~~~~~~~~~~~~~L~~G---k~VI 82 (611)
|+|+|||||||+|++|++.++ +.+|+..++ .++...+.+-+...+...|... ..+|
T Consensus 1 i~G~PgsGK~t~~~~la~~~~--~~~is~~~llr~~~~~~s~~g~~i~~~l~~g~~vp~~~v~~ll~~~l~~~~~~~g~i 78 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYG--LVHISVGDLLREEIKSDSELGKQIQEYLDNGELVPDELVIELLKERLEQPPCNRGFI 78 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHT--SEEEEHHHHHHHHHHTTSHHHHHHHHHHHTTSS--HHHHHHHHHHHHHSGGTTTEEE
T ss_pred CcCCCCCChHHHHHHHHHhcC--cceechHHHHHHHHhhhhHHHHHHHHHHHhhccchHHHHHHHHHHHHhhhcccceee
Confidence 689999999999999999998 677884333 2344444444556667777644 6799
Q ss_pred EecCCCCHHHHHHHHHh-CCCCCe-EEEEEEeCCHHHHHHHHHh
Q 007244 83 LDRCNLEREQRTDFVKL-GGPEVD-VHAVVLDLPAKLCISRSVK 124 (611)
Q Consensus 83 ID~tnl~~~~R~~~~~l-~~~~~~-v~vV~Ld~p~e~~~~Rl~~ 124 (611)
||+.+.+..+...+.++ ...+.. -.+|+|++|.+++.+|+..
T Consensus 79 ldGfPrt~~Qa~~l~~~~~~~~~~~~~vi~L~~~~~~~~~R~~~ 122 (151)
T PF00406_consen 79 LDGFPRTLEQAEALEEILEEEGIPPDLVIFLDCPDETLIERLSQ 122 (151)
T ss_dssp EESB-SSHHHHHHHHHHHHHTTSEESEEEEEE--HHHHHHHHHT
T ss_pred eeeccccHHHHHHHHHHHhhcccchheeeccccchhhhhhhccc
Confidence 99999999998888774 223333 3789999999999999887
No 76
>PRK05541 adenylylsulfate kinase; Provisional
Probab=98.94 E-value=4.8e-09 Score=101.20 Aligned_cols=105 Identities=16% Similarity=0.117 Sum_probs=69.6
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEeecchhccC-----CCCcH-HH---HHHHHHH-HHHCCCcEEE
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINKG-----KSGTK-VQ---CLTSASS-ALKKGKSVFL 83 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~---~~~~~Is~D~i~~~-----~~~~~-~~---~~~~~~~-~L~~Gk~VII 83 (611)
.++|.+|+|+|+|||||||+++.+.+.+. ..+..++.|.++.. ..... .+ ....+.+ ....|..||+
T Consensus 4 ~~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~VI~ 83 (176)
T PRK05541 4 KPNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELREILGHYGYDKQSRIEMALKRAKLAKFLADQGMIVIV 83 (176)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 45678999999999999999999988775 23556777777531 11111 11 1122222 3357889999
Q ss_pred ecCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHh
Q 007244 84 DRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVK 124 (611)
Q Consensus 84 D~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~ 124 (611)
|+++.....+.....+ -....+|||++|.+++.+|+..
T Consensus 84 ~~~~~~~~~~~~~~~~---~~~~~~v~l~~~~e~~~~R~~~ 121 (176)
T PRK05541 84 TTISMFDEIYAYNRKH---LPNYFEVYLKCDMEELIRRDQK 121 (176)
T ss_pred EeCCcHHHHHHHHHhh---cCCeEEEEEeCCHHHHHHhchh
Confidence 9987655444444333 1123588999999999999753
No 77
>PRK13948 shikimate kinase; Provisional
Probab=98.94 E-value=1e-08 Score=100.51 Aligned_cols=121 Identities=17% Similarity=0.153 Sum_probs=76.3
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCC-------------cHHHHH-HHHHHHHHCCCcEE
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG-------------TKVQCL-TSASSALKKGKSVF 82 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~-------------~~~~~~-~~~~~~L~~Gk~VI 82 (611)
...+..|+|+|+|||||||+++.|++.++.++ |+.|.+.....+ .+.++. ..+.+.+..+ ..|
T Consensus 7 ~~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~--iD~D~~ie~~~g~si~~if~~~Ge~~fR~~E~~~l~~l~~~~-~~V 83 (182)
T PRK13948 7 ERPVTWVALAGFMGTGKSRIGWELSRALMLHF--IDTDRYIERVTGKSIPEIFRHLGEAYFRRCEAEVVRRLTRLD-YAV 83 (182)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHcCCCE--EECCHHHHHHHhCCHHHHHHHhCHHHHHHHHHHHHHHHHhcC-CeE
Confidence 35678999999999999999999999999555 777766432111 111222 2333344444 445
Q ss_pred Ee---cCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhc
Q 007244 83 LD---RCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKK 148 (611)
Q Consensus 83 ID---~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~ 148 (611)
|. ++...+..|..+ +..+. +|||+.|.+++.+|+..+ .++. .....+.+.+.+++.+.
T Consensus 84 Ia~GgG~v~~~~n~~~l---~~~g~---vV~L~~~~e~l~~Rl~~~-~RPl-l~~~~~~~~l~~l~~~R 144 (182)
T PRK13948 84 ISLGGGTFMHEENRRKL---LSRGP---VVVLWASPETIYERTRPG-DRPL-LQVEDPLGRIRTLLNER 144 (182)
T ss_pred EECCCcEEcCHHHHHHH---HcCCe---EEEEECCHHHHHHHhcCC-CCCC-CCCCChHHHHHHHHHHH
Confidence 55 456666777765 44444 789999999999999433 3332 22223444556666554
No 78
>cd02908 Macro_Appr_pase_like Macro domain, Appr-1"-pase_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins that show similarity to Appr-1"-pase, containing conserved putative active site residues. Appr-1"-pase is a phosphatase specific for ADP-ribose-1"-monophosphate.
Probab=98.94 E-value=6.7e-10 Score=106.95 Aligned_cols=109 Identities=9% Similarity=0.090 Sum_probs=84.4
Q ss_pred CCchhhhhhHHHHHHhhcCCCCCCCCCCCCCCCCCCcccccccccccccceeecccccccccccCCCCcchhhhcccCCC
Q 007244 194 NPDAKIQLGIMKFLKKVDAPSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGEEVKGTENPEVASVNQNGSS 273 (611)
Q Consensus 194 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 273 (611)
......++.+++.+++.... .. |++ . .|...++.|.+.-|++.|.|..+..+....+...-.+|+..+.+
T Consensus 34 ai~~~~G~~l~~e~~~~~~~--~~-G~~-----v--~T~~~~l~~~~IiH~v~P~~~~~~~~~~~~L~~~~~~~L~~a~~ 103 (165)
T cd02908 34 AIHRAAGPELLEECRELRGC--PT-GEA-----V--ITSGYNLPAKYVIHTVGPVWRGGQHNEAELLASCYRNSLELARE 103 (165)
T ss_pred HHHHHhCHHHHHHHHHhCCC--CC-CCE-----E--EeeCCCCCCCEEEEEcCCcccCCCCcHHHHHHHHHHHHHHHHHH
Confidence 44556678889888887654 11 222 1 35667888999999999999753223334444566778899999
Q ss_pred CCCCccccccCccCCCCCChHHHHHHHHHHHHHHHHhcC
Q 007244 274 SDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLG 312 (611)
Q Consensus 274 ~~~~SiAfPaIStGi~gfP~~~aa~Iiv~tv~~f~~~~~ 312 (611)
.+++|||||+||||+||||.++||+++++++++|+++..
T Consensus 104 ~~~~sIa~P~igtG~~g~p~~~~a~~~~~ai~~fl~~~~ 142 (165)
T cd02908 104 NGLRSIAFPAISTGVYGYPLDEAARIALKTVREFLEEHD 142 (165)
T ss_pred cCCCEEEECceecCCCCCCHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999998743
No 79
>PRK00131 aroK shikimate kinase; Reviewed
Probab=98.94 E-value=5.9e-09 Score=99.16 Aligned_cols=146 Identities=15% Similarity=0.172 Sum_probs=80.3
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCC-------------cHHHHHHHHHHHHHCCCcEEEe
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG-------------TKVQCLTSASSALKKGKSVFLD 84 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~-------------~~~~~~~~~~~~L~~Gk~VIID 84 (611)
+++.+|+|+|+|||||||+|+.|++.++.++ ++.|.+.....+ .+.+....+...+..+..+||.
T Consensus 2 ~~~~~i~l~G~~GsGKstla~~La~~l~~~~--~d~d~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~vi~ 79 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGYDF--IDTDHLIEARAGKSIPEIFEEEGEAAFRELEEEVLAELLARHNLVIS 79 (175)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHhCCCE--EEChHHHHHHcCCCHHHHHHHHCHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 4567999999999999999999999998544 677665322111 0111112222333333333444
Q ss_pred cC---CCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhccCCCccCCccEEE
Q 007244 85 RC---NLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRIT 161 (611)
Q Consensus 85 ~t---nl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~e~P~~~EgFd~V~ 161 (611)
.. .+....|..+ +..+ .+|++++|.+++.+|+..|..++.. ......+.+..++..... .+.+.++ ++
T Consensus 80 ~g~~~~~~~~~r~~l---~~~~---~~v~l~~~~~~~~~R~~~~~~r~~~-~~~~~~~~~~~~~~~~~~-~~~~~~d-l~ 150 (175)
T PRK00131 80 TGGGAVLREENRALL---RERG---TVVYLDASFEELLRRLRRDRNRPLL-QTNDPKEKLRDLYEERDP-LYEEVAD-IT 150 (175)
T ss_pred eCCCEeecHHHHHHH---HhCC---EEEEEECCHHHHHHHhcCCCCCCcC-CCCChHHHHHHHHHHHHH-HHHhhcC-eE
Confidence 32 1233333322 3333 4789999999999999887653221 112334455555554422 2223243 44
Q ss_pred EcCChhhHHHHHH
Q 007244 162 LCQNENDVQAALD 174 (611)
Q Consensus 162 vv~~~~evd~av~ 174 (611)
+..+...+++++.
T Consensus 151 idt~~~~~~e~~~ 163 (175)
T PRK00131 151 VETDGRSPEEVVN 163 (175)
T ss_pred EeCCCCCHHHHHH
Confidence 5544455554443
No 80
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.94 E-value=7.9e-09 Score=101.84 Aligned_cols=144 Identities=16% Similarity=0.216 Sum_probs=84.8
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEe--------------------ecchhc----cCCCCcH--------H
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARI--------------------CQDTIN----KGKSGTK--------V 65 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~I--------------------s~D~i~----~~~~~~~--------~ 65 (611)
.++.+|+|+|+|||||||+++.|+..++..+..+ +.+.+. .+.+... .
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 82 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGEVDGVDYFFVSKEEFEEMIENGEFLEWAEVFGNYYG 82 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCCcCCCeeEEcCHHHHHHHHHcCCcEEEEEECCcccc
Confidence 4667999999999999999999998765222111 111111 1111100 0
Q ss_pred HHHHHHHHHHHCCCcEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHH
Q 007244 66 QCLTSASSALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRM 144 (611)
Q Consensus 66 ~~~~~~~~~L~~Gk~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm 144 (611)
.....+...+..|..+|+|.. ......+ ...+..+.+++++++.+++.+|+..|.. ...+.+-.|+
T Consensus 83 ~~~~~i~~~l~~g~~vi~dl~------~~g~~~l~~~~~~~~~I~i~~~s~~~l~~Rl~~R~~-------~~~~~i~~rl 149 (205)
T PRK00300 83 TPRSPVEEALAAGKDVLLEID------WQGARQVKKKMPDAVSIFILPPSLEELERRLRGRGT-------DSEEVIARRL 149 (205)
T ss_pred CcHHHHHHHHHcCCeEEEeCC------HHHHHHHHHhCCCcEEEEEECcCHHHHHHHHHhcCC-------CCHHHHHHHH
Confidence 013567888999999999983 3333333 3333334555667889999999999975 2334444444
Q ss_pred HhhccCCCccCCccEEEEcCChhhHHHHHHHhc
Q 007244 145 LQKKELPKLSEGFSRITLCQNENDVQAALDTYS 177 (611)
Q Consensus 145 ~~~~e~P~~~EgFd~V~vv~~~~evd~av~~~~ 177 (611)
......-.....|+.+++++ +++++...+.
T Consensus 150 ~~~~~~~~~~~~~d~vi~n~---~~e~~~~~l~ 179 (205)
T PRK00300 150 AKAREEIAHASEYDYVIVND---DLDTALEELK 179 (205)
T ss_pred HHHHHHHHhHHhCCEEEECC---CHHHHHHHHH
Confidence 43332222234578887654 3455555444
No 81
>PLN02772 guanylate kinase
Probab=98.93 E-value=5.8e-09 Score=112.47 Aligned_cols=153 Identities=13% Similarity=0.156 Sum_probs=97.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcCCCe----EEee-----------------cchh----ccCCCCcHHHH------
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPW----ARIC-----------------QDTI----NKGKSGTKVQC------ 67 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~----~~Is-----------------~D~i----~~~~~~~~~~~------ 67 (611)
...+|+|+||+|+||+|++++|.+.+...+ .+.+ .+.+ ..+.+.++.++
T Consensus 134 ~~k~iVlsGPSGvGKsTL~~~L~~~~p~~~~~~vshTTR~pR~gE~dG~dY~Fvs~eeFe~~i~~g~FlE~~e~~Gn~YG 213 (398)
T PLN02772 134 AEKPIVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPREMEKDGVHYHFTERSVMEKEIKDGKFLEFASVHGNLYG 213 (398)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhhhccccccccccccCCCCcccccCCceEeeCCHHHHHHHHHhCccceeeeecCcccc
Confidence 557999999999999999999988653211 1111 1111 12333332211
Q ss_pred --HHHHHHHHHCCCcEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHH
Q 007244 68 --LTSASSALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRM 144 (611)
Q Consensus 68 --~~~~~~~L~~Gk~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm 144 (611)
.+.+...+++|+.+|+|. +.+....+ ...-..+.+++++++.+++.+|+..|.. ..++++.+|+
T Consensus 214 Tsk~~V~~vl~~Gk~vILdL------D~qGar~Lr~~~l~~v~IFI~PPSlEeLe~RL~~RGt-------eseE~I~kRL 280 (398)
T PLN02772 214 TSIEAVEVVTDSGKRCILDI------DVQGARSVRASSLEAIFIFICPPSMEELEKRLRARGT-------ETEEQIQKRL 280 (398)
T ss_pred ccHHHHHHHHHhCCcEEEeC------CHHHHHHHHHhcCCeEEEEEeCCCHHHHHHHHHhcCC-------CCHHHHHHHH
Confidence 167788889999999998 55555555 2222345566667789999999999987 3556666777
Q ss_pred HhhccCCC---ccCCccEEEEcCChhhHHHHHHHhccCCCCcccC-CCCCCC
Q 007244 145 LQKKELPK---LSEGFSRITLCQNENDVQAALDTYSGLGPLDTLP-HGSFGQ 192 (611)
Q Consensus 145 ~~~~e~P~---~~EgFd~V~vv~~~~evd~av~~~~~lgp~dII~-~gc~~~ 192 (611)
.....+.. ....||++++++ +++++..++. .||. ++|-..
T Consensus 281 ~~A~~Ei~~~~~~~~fD~vIvND---dLe~A~~~L~-----~iL~~~~~~~~ 324 (398)
T PLN02772 281 RNAEAELEQGKSSGIFDHILYND---NLEECYKNLK-----KLLGLDGLAAV 324 (398)
T ss_pred HHHHHHHhhccccCCCCEEEECC---CHHHHHHHHH-----HHHhhcCcccc
Confidence 66532222 234689888874 5666666555 5555 666443
No 82
>PRK03846 adenylylsulfate kinase; Provisional
Probab=98.93 E-value=1.4e-08 Score=100.15 Aligned_cols=105 Identities=21% Similarity=0.243 Sum_probs=77.9
Q ss_pred ccCCCcEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEeecchhccCC---C----CcHH----HHHHHHHHHHHCCCc
Q 007244 15 EKKWKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINKGK---S----GTKV----QCLTSASSALKKGKS 80 (611)
Q Consensus 15 ~~~~~p~LIvLvG~PGSGKST~A~~L~~~~~---~~~~~Is~D~i~~~~---~----~~~~----~~~~~~~~~L~~Gk~ 80 (611)
...++|.+|+|+|+|||||||+++.|...+. .....++.|.++... . .... .+...+...+..|..
T Consensus 19 ~~~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~G~~ 98 (198)
T PRK03846 19 LHGHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHGLCSDLGFSDADRKENIRRVGEVAKLMVDAGLV 98 (198)
T ss_pred hcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhhhhhcCCcCcccHHHHHHHHHHHHHHHhhCCCE
Confidence 3567899999999999999999999988652 335678877775321 1 1111 122445566778888
Q ss_pred EEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHH
Q 007244 81 VFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISR 121 (611)
Q Consensus 81 VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R 121 (611)
||.+..+..+..|..++.+ ...+ +.+|+|++|.+++.+|
T Consensus 99 VI~~~~~~~~~~R~~~r~~l~~~~--~i~V~L~~~~e~~~~R 138 (198)
T PRK03846 99 VLTAFISPHRAERQMVRERLGEGE--FIEVFVDTPLAICEAR 138 (198)
T ss_pred EEEEeCCCCHHHHHHHHHHcccCC--EEEEEEcCCHHHHHhc
Confidence 8877777778999999888 5553 4579999999999999
No 83
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=98.92 E-value=1e-08 Score=98.88 Aligned_cols=106 Identities=24% Similarity=0.282 Sum_probs=78.9
Q ss_pred cCCCcEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchhccCCC---C-cH-H------HHHHHHHHHHHCCCcE
Q 007244 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGKS---G-TK-V------QCLTSASSALKKGKSV 81 (611)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D~i~~~~~---~-~~-~------~~~~~~~~~L~~Gk~V 81 (611)
...++.+|+|+|+|||||||+|.+|.+.+ +.....++.|.++.+-. + +. + .+...+......|-.|
T Consensus 19 ~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLgFs~edR~eniRRvaevAkll~daG~iv 98 (197)
T COG0529 19 KGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLGFSREDRIENIRRVAEVAKLLADAGLIV 98 (197)
T ss_pred hCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCCCCCChHHHHHHHHHHHHHHHHHHHCCeEE
Confidence 56778999999999999999999998765 34567889999986532 1 11 1 1224445555677777
Q ss_pred EEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHH
Q 007244 82 FLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSV 123 (611)
Q Consensus 82 IID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~ 123 (611)
|+......++.|+..+++ .+. .++-||+++|.++|.+|--
T Consensus 99 iva~ISP~r~~R~~aR~~~~~~--~FiEVyV~~pl~vce~RDp 139 (197)
T COG0529 99 IVAFISPYREDRQMARELLGEG--EFIEVYVDTPLEVCERRDP 139 (197)
T ss_pred EEEeeCccHHHHHHHHHHhCcC--ceEEEEeCCCHHHHHhcCc
Confidence 777777888999998888 443 4568899999999999863
No 84
>PRK13947 shikimate kinase; Provisional
Probab=98.91 E-value=8.3e-09 Score=98.65 Aligned_cols=99 Identities=17% Similarity=0.189 Sum_probs=64.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCc-------------HHHHHHHHHHHHHCCCcEEEecC--
Q 007244 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGT-------------KVQCLTSASSALKKGKSVFLDRC-- 86 (611)
Q Consensus 22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~-------------~~~~~~~~~~~L~~Gk~VIID~t-- 86 (611)
-|+|+|+|||||||+|+.|++.++.++ ++.|.+.....+. +......+.+.+....++||...
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~--id~d~~~~~~~g~~~~~~~~~~ge~~~~~~e~~~~~~l~~~~~~vi~~g~g 80 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGF--IDTDKEIEKMTGMTVAEIFEKDGEVRFRSEEKLLVKKLARLKNLVIATGGG 80 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCE--EECchhhhhhcCCcHHHHHHHhChHHHHHHHHHHHHHHhhcCCeEEECCCC
Confidence 389999999999999999999999555 7777664322111 11122334445554455565432
Q ss_pred -CCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccc
Q 007244 87 -NLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEH 128 (611)
Q Consensus 87 -nl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~ 128 (611)
.+....+..+ +..+. +|||++|.+++.+|+..|..+
T Consensus 81 ~vl~~~~~~~l---~~~~~---vv~L~~~~~~l~~Rl~~r~~r 117 (171)
T PRK13947 81 VVLNPENVVQL---RKNGV---VICLKARPEVILRRVGKKKSR 117 (171)
T ss_pred CcCCHHHHHHH---HhCCE---EEEEECCHHHHHHHhcCCCCC
Confidence 2333333322 44443 899999999999999888654
No 85
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.91 E-value=1.3e-08 Score=98.23 Aligned_cols=139 Identities=16% Similarity=0.161 Sum_probs=78.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCC--eEEe----ecc--------------hh----ccCCCCcHHH-------HHH
Q 007244 21 ILVIMVGAPGSGKSTFCEHVMRSSARP--WARI----CQD--------------TI----NKGKSGTKVQ-------CLT 69 (611)
Q Consensus 21 ~LIvLvG~PGSGKST~A~~L~~~~~~~--~~~I----s~D--------------~i----~~~~~~~~~~-------~~~ 69 (611)
.+++|+|+|||||||+++.|+..++.. ..++ ..+ .+ ..+.+....+ ...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 81 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLAGDPRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYGIPA 81 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCcCCcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCccccChH
Confidence 479999999999999999998876521 1111 111 11 0111111000 112
Q ss_pred HHHHHHHCCCcEEEecCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhcc
Q 007244 70 SASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKE 149 (611)
Q Consensus 70 ~~~~~L~~Gk~VIID~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~e 149 (611)
.+...+..|..||+|+. ...+..+... . ....+|+|++|.+++.+|+..|.+ ..++.+..++.....
T Consensus 82 ~i~~~~~~g~~vv~~g~---~~~~~~~~~~--~-~~~~~i~l~~~~~~~~~Rl~~R~~-------~~~~~~~~rl~~~~~ 148 (179)
T TIGR02322 82 EIDQWLEAGDVVVVNGS---RAVLPEARQR--Y-PNLLVVNITASPDVLAQRLAARGR-------ESREEIEERLARSAR 148 (179)
T ss_pred HHHHHHhcCCEEEEECC---HHHHHHHHHH--C-CCcEEEEEECCHHHHHHHHHHcCC-------CCHHHHHHHHHHHhh
Confidence 34566788999999984 2222222222 1 244688999999999999999865 244555566543321
Q ss_pred CCCccCCccEEEEcCChhhHHHHHHH
Q 007244 150 LPKLSEGFSRITLCQNENDVQAALDT 175 (611)
Q Consensus 150 ~P~~~EgFd~V~vv~~~~evd~av~~ 175 (611)
. .. +.++.+++. +...++++...
T Consensus 149 ~-~~-~~~~~~vi~-~~~~~ee~~~~ 171 (179)
T TIGR02322 149 F-AA-APADVTTID-NSGSLEVAGET 171 (179)
T ss_pred c-cc-ccCCEEEEe-CCCCHHHHHHH
Confidence 1 11 223444343 33456655543
No 86
>PRK06547 hypothetical protein; Provisional
Probab=98.88 E-value=1.3e-08 Score=98.87 Aligned_cols=106 Identities=21% Similarity=0.258 Sum_probs=70.6
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCc-HH--HHHHHHHH--------------------
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGT-KV--QCLTSASS-------------------- 73 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~-~~--~~~~~~~~-------------------- 73 (611)
...+.+|++.|+|||||||+++.|++.++ +..++.|.+..++... .. .+...+.+
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~~--~~~~~~d~~~~~~~~~~~~~~~l~~~~l~~g~~~~~~yd~~~~~~~~~~ 89 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAARTG--FQLVHLDDLYPGWHGLAAASEHVAEAVLDEGRPGRWRWDWANNRPGDWV 89 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHhC--CCeecccceecccccCChHHHHHHHHHHhCCCCceecCCCCCCCCCCcE
Confidence 45678899999999999999999999887 4457888887654321 11 11111110
Q ss_pred HHHCCCcEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccc
Q 007244 74 ALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEH 128 (611)
Q Consensus 74 ~L~~Gk~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~ 128 (611)
.+..+..+|++++..... .+..+ .. +..+.+||+++|.+++++|..+|..+
T Consensus 90 ~l~~~~vVIvEG~~al~~---~~r~~~d~-~g~v~~I~ld~~~~vr~~R~~~Rd~~ 141 (172)
T PRK06547 90 SVEPGRRLIIEGVGSLTA---ANVALASL-LGEVLTVWLDGPEALRKERALARDPD 141 (172)
T ss_pred EeCCCCeEEEEehhhccH---HHHHHhcc-CCCEEEEEEECCHHHHHHHHHhcCch
Confidence 011234588999654322 23333 33 33467999999999999999999764
No 87
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=98.87 E-value=1.1e-08 Score=99.66 Aligned_cols=140 Identities=15% Similarity=0.266 Sum_probs=86.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeE-Eee--------------------cchhc----cCCCCcHH--------
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWA-RIC--------------------QDTIN----KGKSGTKV-------- 65 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~-~Is--------------------~D~i~----~~~~~~~~-------- 65 (611)
++++|+|+||+||||||++++|.+.++..+. .++ .+.+. .+.+.++.
T Consensus 1 ~~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TTR~~r~~E~~g~~y~fvs~~~f~~~~~~~~fie~~~~~g~~YG 80 (183)
T PF00625_consen 1 KRRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTTRPPRPGEVDGVDYHFVSKEEFERMIKAGEFIEYGEYDGNYYG 80 (183)
T ss_dssp SSSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEESS-GGTTS-TTTSEEE--HHHHHHHHHTTHEEEEEEETTEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcccccccceeecccCCcccccCCcceEEEeechhhhhhccccEEEEeeecchhhh
Confidence 3568999999999999999999998764332 121 11110 11111110
Q ss_pred HHHHHHHHHHHCCCcEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEe-CCHHHHHHHHHhcccccCCCCCCCHHHHHHH
Q 007244 66 QCLTSASSALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLD-LPAKLCISRSVKRIEHEGNLQGGKAAAVVNR 143 (611)
Q Consensus 66 ~~~~~~~~~L~~Gk~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld-~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~r 143 (611)
.-...+...+..|+.+|+|. ....+..+ +. +..+.+||+. .+.+.+.+|+..|.. +..+++.++
T Consensus 81 t~~~~i~~~~~~gk~~il~~------~~~g~~~L~~~-~~~~~~IfI~~~s~~~l~~~l~~r~~-------~~~~~i~~r 146 (183)
T PF00625_consen 81 TSKSAIDKVLEEGKHCILDV------DPEGVKQLKKA-GFNPIVIFIKPPSPEVLKRRLRRRGD-------ESEEEIEER 146 (183)
T ss_dssp EEHHHHHHHHHTTTEEEEEE------THHHHHHHHHC-TTTEEEEEEEESSHHHHHHHHHTTTH-------CHHHHHHHH
T ss_pred hccchhhHhhhcCCcEEEEc------cHHHHHHHHhc-ccCceEEEEEccchHHHHHHHhcccc-------ccHHHHHHH
Confidence 01267788899999999998 56666666 33 5566677775 557888888888765 334455555
Q ss_pred HHhhccCCCccCCccEEEEcCChhhHHHHHHH
Q 007244 144 MLQKKELPKLSEGFSRITLCQNENDVQAALDT 175 (611)
Q Consensus 144 m~~~~e~P~~~EgFd~V~vv~~~~evd~av~~ 175 (611)
+...-..-.....||.++.+++ ++.+...
T Consensus 147 ~~~~~~~~~~~~~fd~vi~n~~---le~~~~~ 175 (183)
T PF00625_consen 147 LERAEKEFEHYNEFDYVIVNDD---LEEAVKE 175 (183)
T ss_dssp HHHHHHHHGGGGGSSEEEECSS---HHHHHHH
T ss_pred HHHHHHHHhHhhcCCEEEECcC---HHHHHHH
Confidence 5543222222222999888754 4444443
No 88
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=98.87 E-value=2.5e-08 Score=96.58 Aligned_cols=144 Identities=16% Similarity=0.229 Sum_probs=83.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCC---cH----------HHHHHHHHHHHHCCCcEEEec-
Q 007244 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG---TK----------VQCLTSASSALKKGKSVFLDR- 85 (611)
Q Consensus 20 p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~---~~----------~~~~~~~~~~L~~Gk~VIID~- 85 (611)
...|+|+|++||||||+++.+++.++.++ ++.|.......+ .+ ......+...+.....+|+..
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~--vd~D~~i~~~~g~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~vi~~g 81 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEF--YDSDQEIEKRTGADIGWVFDVEGEEGFRDREEKVINELTEKQGIVLATG 81 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcE--EECCchHHHHhCcCHhHHHHHhCHHHHHHHHHHHHHHHHhCCCEEEEcC
Confidence 34699999999999999999999988554 666654221111 00 011123333344445566653
Q ss_pred --CCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhccCCCccCCccEEEEc
Q 007244 86 --CNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLC 163 (611)
Q Consensus 86 --tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~e~P~~~EgFd~V~vv 163 (611)
....+..+..+ +..+. +|||++|.++|.+|+..+..++.. .+..+.+.+..++... .|.+.+ +.++++.
T Consensus 82 gg~v~~~~~~~~l---~~~~~---vv~L~~~~e~~~~Ri~~~~~rP~~-~~~~~~~~~~~l~~~R-~~~Y~~-~Ad~~id 152 (172)
T PRK05057 82 GGSVKSRETRNRL---SARGV---VVYLETTIEKQLARTQRDKKRPLL-QVDDPREVLEALANER-NPLYEE-IADVTIR 152 (172)
T ss_pred CchhCCHHHHHHH---HhCCE---EEEEeCCHHHHHHHHhCCCCCCCC-CCCCHHHHHHHHHHHH-HHHHHh-hCCEEEE
Confidence 22334444333 44454 899999999999999876655432 2233455666666655 343333 3345555
Q ss_pred CChhhHHHHHH
Q 007244 164 QNENDVQAALD 174 (611)
Q Consensus 164 ~~~~evd~av~ 174 (611)
.+...+++++.
T Consensus 153 t~~~s~~ei~~ 163 (172)
T PRK05057 153 TDDQSAKVVAN 163 (172)
T ss_pred CCCCCHHHHHH
Confidence 44444544443
No 89
>PRK01184 hypothetical protein; Provisional
Probab=98.87 E-value=4.2e-08 Score=95.24 Aligned_cols=101 Identities=21% Similarity=0.294 Sum_probs=66.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeec-chhccC-----CC------CcH----------HHHHHHHHHHHHC-
Q 007244 21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ-DTINKG-----KS------GTK----------VQCLTSASSALKK- 77 (611)
Q Consensus 21 ~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~-D~i~~~-----~~------~~~----------~~~~~~~~~~L~~- 77 (611)
.+|+|+|+|||||||+++ ++++++ +.+++. |.+++. .. +.. ..+...+...+..
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~~g--~~~i~~~d~lr~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~ 78 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAREMG--IPVVVMGDVIREEVKKRGLEPTDENIGKVAIDLRKELGMDAVAKRTVPKIREK 78 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHHcC--CcEEEhhHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHChHHHHHHHHHHHHhc
Confidence 489999999999999987 778888 445764 555321 10 100 0011222233433
Q ss_pred -CCcEEEecCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244 78 -GKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (611)
Q Consensus 78 -Gk~VIID~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~ 127 (611)
+..||+|++ ....++..+.+. .+....+|++++|.+++.+|+..|..
T Consensus 79 ~~~~vvidg~-r~~~e~~~~~~~--~~~~~~~i~v~~~~~~~~~Rl~~R~~ 126 (184)
T PRK01184 79 GDEVVVIDGV-RGDAEVEYFRKE--FPEDFILIAIHAPPEVRFERLKKRGR 126 (184)
T ss_pred CCCcEEEeCC-CCHHHHHHHHHh--CCcccEEEEEECCHHHHHHHHHHcCC
Confidence 577999996 566666666554 22234688999999999999998864
No 90
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=98.87 E-value=2e-08 Score=101.20 Aligned_cols=132 Identities=16% Similarity=0.191 Sum_probs=82.5
Q ss_pred cCCCcEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEeecchhccC---------CCC--------c----HHHHHHHH
Q 007244 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINKG---------KSG--------T----KVQCLTSA 71 (611)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~---~~~~~Is~D~i~~~---------~~~--------~----~~~~~~~~ 71 (611)
....+.+|+|+|+||.|||++|++|.+-+. ....+++...+++. .+. . ...+++.+
T Consensus 8 ~~~~kl~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~~~~~~~~~~ff~p~n~~~~~~R~~~a~~~l~dl 87 (222)
T PF01591_consen 8 FHAGKLVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRKLSGAPQDAEFFDPDNEEAKKLREQIAKEALEDL 87 (222)
T ss_dssp -----EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHSS-S-GGGGSTT-HHHHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecccceecccccccccccCCCCChHHHHHHHHHHHHHHHHH
Confidence 356678999999999999999999987544 33445564444310 000 0 11234666
Q ss_pred HHHHH--CCCcEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccccc-CCCCCCCHHHHHHHHHhh
Q 007244 72 SSALK--KGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHE-GNLQGGKAAAVVNRMLQK 147 (611)
Q Consensus 72 ~~~L~--~Gk~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~-g~~~~~vpeevi~rm~~~ 147 (611)
...|. .|...|+|+||.+++.|+.+.+. +..++.+.+|-.-|+.+.+++++..+.... ..+.+..+++.++.+.++
T Consensus 88 ~~~l~~~~G~VAI~DATN~T~~RR~~l~~~~~~~~~~vlFIEsic~D~~ii~~NI~~~~~~spDY~~~~~e~A~~Df~~R 167 (222)
T PF01591_consen 88 IEWLQEEGGQVAIFDATNSTRERRKMLVERFKEHGIKVLFIESICDDPEIIERNIREKKQNSPDYKGMDPEEAIEDFKKR 167 (222)
T ss_dssp HHHHHTS--SEEEEES---SHHHHHHHHHHHHHTT-EEEEEEEE---HHHHHHHHHHHHTTSGGGTTS-HHHHHHHHHHH
T ss_pred HHHHhcCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEEeCCHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHH
Confidence 67777 45678999999999999999999 778888888888889999999888776532 223445677777776665
No 91
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=98.86 E-value=2.2e-08 Score=113.86 Aligned_cols=107 Identities=21% Similarity=0.230 Sum_probs=82.1
Q ss_pred cCCCcEEEEEEcCCCCcHHHHHHHHHHHcCC----CeEEeecchhccCCCC-----c--HHH----HHHHHHHHHHCCCc
Q 007244 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSAR----PWARICQDTINKGKSG-----T--KVQ----CLTSASSALKKGKS 80 (611)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~----~~~~Is~D~i~~~~~~-----~--~~~----~~~~~~~~L~~Gk~ 80 (611)
....+.+|+|+|+|||||||+|+.|++.++. ....++.|.++.+..+ . +.. +...+...++.|..
T Consensus 388 r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~vr~~l~ge~~f~~~er~~~~~~l~~~a~~v~~~Gg~ 467 (568)
T PRK05537 388 RHKQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVRKHLSSELGFSKEDRDLNILRIGFVASEITKNGGI 467 (568)
T ss_pred ccCCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCE
Confidence 3455789999999999999999999998873 2467888888643221 1 111 11344567788999
Q ss_pred EEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHH
Q 007244 81 VFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSV 123 (611)
Q Consensus 81 VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~ 123 (611)
||+|.++.....|..++++ +..+ .+++|+|++|.++|.+|+.
T Consensus 468 vI~~~~~p~~~~R~~nr~llk~~g-~fivV~L~~p~e~l~~R~r 510 (568)
T PRK05537 468 AICAPIAPYRATRREVREMIEAYG-GFIEVHVATPLEVCEQRDR 510 (568)
T ss_pred EEEEeCCchHHHHHHHHHHHhhcC-CEEEEEEcCCHHHHHHhcc
Confidence 9999999999999999998 6655 3568899999999999973
No 92
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=98.86 E-value=1.8e-08 Score=98.06 Aligned_cols=108 Identities=19% Similarity=0.274 Sum_probs=76.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccC----------CC---------Cc-----HHHHHHHHHHHHH
Q 007244 21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKG----------KS---------GT-----KVQCLTSASSALK 76 (611)
Q Consensus 21 ~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~----------~~---------~~-----~~~~~~~~~~~L~ 76 (611)
.+|+|-|+|.|||||+|+.|.+.+..+|.+++-|.+... .+ +. ....+..+..+.+
T Consensus 2 ~iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~iaa~a~ 81 (174)
T PF07931_consen 2 QIIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVDMMPPGRYRPGDGLEPAGDRPDGGPLFRRLYAAMHAAIAAMAR 81 (174)
T ss_dssp -EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHHHS-GGGGTSTTSEEEETTSEEE-HHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHhhcCcccccCCccccccccCCchhHHHHHHHHHHHHHHHHHHh
Confidence 589999999999999999999999999999998888430 11 01 1123467777888
Q ss_pred CCCcEEEecCCCCHHH-HHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhccccc
Q 007244 77 KGKSVFLDRCNLEREQ-RTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHE 129 (611)
Q Consensus 77 ~Gk~VIID~tnl~~~~-R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~ 129 (611)
.|.+||+|........ ...+.++ ..++++.+|-+-||.+++.+|-+.|..+.
T Consensus 82 aG~~VIvD~v~~~~~~l~d~l~~~-L~~~~vl~VgV~Cpleil~~RE~~RgDR~ 134 (174)
T PF07931_consen 82 AGNNVIVDDVFLGPRWLQDCLRRL-LAGLPVLFVGVRCPLEILERRERARGDRP 134 (174)
T ss_dssp TT-EEEEEE--TTTHHHHHHHHHH-HTTS-EEEEEEE--HHHHHHHHHHHTSSS
T ss_pred CCCCEEEecCccCcHHHHHHHHHH-hCCCceEEEEEECCHHHHHHHHHhcCCcc
Confidence 9999999987777654 4445354 23577889999999999999999999853
No 93
>PRK03839 putative kinase; Provisional
Probab=98.86 E-value=1.2e-08 Score=98.89 Aligned_cols=91 Identities=20% Similarity=0.184 Sum_probs=59.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccC-CCC----c-----HHHHHHHHHHHHHCCCcEEEecCCCCHH
Q 007244 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKG-KSG----T-----KVQCLTSASSALKKGKSVFLDRCNLERE 91 (611)
Q Consensus 22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~-~~~----~-----~~~~~~~~~~~L~~Gk~VIID~tnl~~~ 91 (611)
.|+|+|+|||||||+++.|++.++.++ ++.|.+... ... . ...+...+.+. ..+..+|+|+..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~--id~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~vIidG~~---- 74 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEY--VDLTEFALKKGIGEEKDDEMEIDFDKLAYFIEEE-FKEKNVVLDGHL---- 74 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcE--EehhhhhhhcCCcccCChhhhcCHHHHHHHHHHh-ccCCCEEEEecc----
Confidence 589999999999999999999998544 666655311 100 0 11111222222 235679999932
Q ss_pred HHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244 92 QRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (611)
Q Consensus 92 ~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~ 127 (611)
.. +...+ .+|+|+++.+++.+|+..|..
T Consensus 75 --~~---l~~~~---~vi~L~~~~~~~~~Rl~~R~~ 102 (180)
T PRK03839 75 --SH---LLPVD---YVIVLRAHPKIIKERLKERGY 102 (180)
T ss_pred --cc---ccCCC---EEEEEECCHHHHHHHHHHcCC
Confidence 11 12223 378999999999999998864
No 94
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=98.86 E-value=8e-09 Score=102.58 Aligned_cols=136 Identities=21% Similarity=0.326 Sum_probs=105.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcC----CCeEEe-ecchhcc---CCCCc-------HHHHHHHHHHHHHCCCcEEEecC
Q 007244 22 LVIMVGAPGSGKSTFCEHVMRSSA----RPWARI-CQDTINK---GKSGT-------KVQCLTSASSALKKGKSVFLDRC 86 (611)
Q Consensus 22 LIvLvG~PGSGKST~A~~L~~~~~----~~~~~I-s~D~i~~---~~~~~-------~~~~~~~~~~~L~~Gk~VIID~t 86 (611)
|||++|.|.|||||.|+.|.+.+. ...+.| +...+.- ..++. +-.+...+.+.|..+..||+|.-
T Consensus 3 LVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~deslg~~~ns~y~~s~~EK~lRg~L~S~v~R~Lsk~~iVI~Dsl 82 (281)
T KOG3062|consen 3 LVVICGLPCSGKSTRAVELREALKERGTKQSVRIIDDESLGIEKNSNYGDSQAEKALRGKLRSAVDRSLSKGDIVIVDSL 82 (281)
T ss_pred eEEEeCCCCCCchhHHHHHHHHHHhhcccceEEEechhhcCCCCcccccccHHHHHHHHHHHHHHHhhcccCcEEEEecc
Confidence 799999999999999999877654 212333 3222221 11221 22355788899999999999999
Q ss_pred CCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhccCCCccCCccEE
Q 007244 87 NLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRI 160 (611)
Q Consensus 87 nl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~e~P~~~EgFd~V 160 (611)
|+-+-.|-.+-.+ +.......+|+..+|.+.|++-+..|... +. +..+.++++.+..+||+|.....||.-
T Consensus 83 NyIKGfRYeLyC~ak~~~tt~Cvv~t~vp~e~~r~~Ns~~~~p-~e--~gy~~e~le~L~~RyEeP~s~NRWDsP 154 (281)
T KOG3062|consen 83 NYIKGFRYELYCEAKAARTTYCVVHTAVPQELCREWNSEREDP-GE--DGYDDELLEALVQRYEEPNSRNRWDSP 154 (281)
T ss_pred cccccceeeeeeehhccceeEEEEEecCCHHHHHHhcccCCCC-CC--CCCCHHHHHHHHHHhhCCCccccccCc
Confidence 9999999888777 77777778999999999999999888763 22 357889999999999999999999873
No 95
>PRK08356 hypothetical protein; Provisional
Probab=98.85 E-value=8.3e-08 Score=94.51 Aligned_cols=98 Identities=13% Similarity=0.185 Sum_probs=63.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh-----cc-------------------CCCCcHHH----------
Q 007244 21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-----NK-------------------GKSGTKVQ---------- 66 (611)
Q Consensus 21 ~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i-----~~-------------------~~~~~~~~---------- 66 (611)
.+|+|+|||||||||+|+.|. .++ +.+|+..+. +. +.+..+..
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~-~~g--~~~is~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~g~~~~~~yG~~~ 82 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFE-EKG--FCRVSCSDPLIDLLTHNVSDYSWVPEVPFKGEPTRENLIELGRYLKEKYGEDI 82 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHH-HCC--CcEEeCCCcccccccccccccccccHHHHhhccccccHHHHHHHHHHhcCcHH
Confidence 479999999999999999995 566 345654321 11 01111111
Q ss_pred HHHHHHHHHHCCCcEEEecCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244 67 CLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (611)
Q Consensus 67 ~~~~~~~~L~~Gk~VIID~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~ 127 (611)
+.+.+.+.+.....+|||+. .+..++..+... .+ .+|++++|.+++.+|+..|..
T Consensus 83 ~~~~~~~~~~~~~~ividG~-r~~~q~~~l~~~--~~---~vi~l~~~~~~~~~Rl~~R~~ 137 (195)
T PRK08356 83 LIRLAVDKKRNCKNIAIDGV-RSRGEVEAIKRM--GG---KVIYVEAKPEIRFERLRRRGA 137 (195)
T ss_pred HHHHHHHHhccCCeEEEcCc-CCHHHHHHHHhc--CC---EEEEEECCHHHHHHHHHhcCC
Confidence 11234445544557999996 666666665332 12 478999999999999999976
No 96
>cd02906 Macro_1 Macro domain, Unknown family 1. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins containing a macro domain, either as a stand-alone domain or in addition to a C-terminal SIR2 (silent information regulator 2) domain.
Probab=98.84 E-value=1.2e-09 Score=103.47 Aligned_cols=104 Identities=11% Similarity=-0.006 Sum_probs=75.3
Q ss_pred CchhhhhhHHHHHHhhcCCC--CCCCCCCCCCCCCCCcccccccccccccceeecccccccc--cccCCCCcchhhhccc
Q 007244 195 PDAKIQLGIMKFLKKVDAPS--NTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGE--EVKGTENPEVASVNQN 270 (611)
Q Consensus 195 ~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~s~~~~ 270 (611)
.....++.|+...+++-+.. ....+++ . .|...++.|.++-|.+.|.|..+.. .....+...-.+|+..
T Consensus 40 I~~~aG~~l~~e~~~~~~~~g~~~~~G~a-----~--~T~~~~L~~k~VIHavgP~~~~~~~~~~~~~~L~~~~~~~L~~ 112 (147)
T cd02906 40 IHTFAGPQLRQACFELMTKQGREEPTGQA-----K--ITPGYNLPAKYVIHTVGPIIERGLTTPIHRDLLAKCYLSCLDL 112 (147)
T ss_pred HHHHhCHHHHHHHHHHHHhcCCCCCCCeE-----E--EEeCCCCCCCEEEEECCCcccCCCCCccHHHHHHHHHHHHHHH
Confidence 34455677777665542211 1111222 1 4677889999999999999876321 2233445566678899
Q ss_pred CCCCCCCccccccCccCCCCCChHHHHHHHHHHHH
Q 007244 271 GSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVE 305 (611)
Q Consensus 271 ~~~~~~~SiAfPaIStGi~gfP~~~aa~Iiv~tv~ 305 (611)
+.+++++|||||+||||+||||.++||+|++++|+
T Consensus 113 a~~~~~~sIA~P~i~tG~~g~p~~~aA~i~~~~v~ 147 (147)
T cd02906 113 AEKAGLKSIAFCCISTGLFGFPQEEAAQIAIKTVL 147 (147)
T ss_pred HHHcCCCEEEECcccccCCCCCHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999984
No 97
>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]
Probab=98.83 E-value=4.9e-09 Score=110.93 Aligned_cols=144 Identities=27% Similarity=0.398 Sum_probs=121.6
Q ss_pred ccCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHHHHHHHHHHCCCcEEEecCCCCHHHHH
Q 007244 15 EKKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNLEREQRT 94 (611)
Q Consensus 15 ~~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L~~Gk~VIID~tnl~~~~R~ 94 (611)
+....+.+|+++|.||||||||+.......+ |.++++|.+ +.+..|.....++|..|+.||+|.|++..+.|.
T Consensus 264 ~~~~~~eiV~~vgfp~sGks~f~a~~~~~~~--y~~vn~d~l-----g~~~~C~~~~~e~l~~~~sVvidnt~pd~~sr~ 336 (422)
T KOG2134|consen 264 KLDGHGEIVVAVGFPGSGKSTFAAKRVVPNG--YKIVNADTL-----GTPQNCLLANAEALKHGKSVVIDNTNPDAESRK 336 (422)
T ss_pred ccCCCCcEEEEEecCCCCcchhhhhhcccCc--eeEeecccC-----CCchhhHHHHHHHhhcccEEeeCCCCcchHHHH
Confidence 3445569999999999999999999887766 778888886 688899999999999999999999999999999
Q ss_pred HHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhccCCCccCCccEEEEcCCh
Q 007244 95 DFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQNE 166 (611)
Q Consensus 95 ~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~e~P~~~EgFd~V~vv~~~ 166 (611)
.|++. ++....+..+.+..+.+.....+..|.-+.. .....++-++..+...|+.|.+.|||-.++.+.-.
T Consensus 337 ~~~~~a~e~~~p~rcf~~~~s~eq~~hn~~fR~~~~~-~~~~~~dm~~~~~k~kf~~ptl~egft~i~ev~f~ 408 (422)
T KOG2134|consen 337 YYLDCATEREIPIRCFEMNSSVEQAQHNNRFRELSDS-VKDSGSDMVFNSEKSKFQKPTLDEGFTNILEVPFK 408 (422)
T ss_pred HHhhhHHHhCccceeeeeccHHHhhhccccchhhccc-hhcccccceeehhhccccCchHhhhhhhhhccchh
Confidence 99999 8888889999999999988888888875421 12245566677788889999999999988777644
No 98
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.83 E-value=3.9e-08 Score=113.43 Aligned_cols=105 Identities=28% Similarity=0.313 Sum_probs=81.0
Q ss_pred cCCCcEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEeecchhccCCCC----c---HH----HHHHHHHHHHHCCCcE
Q 007244 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINKGKSG----T---KV----QCLTSASSALKKGKSV 81 (611)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~---~~~~~Is~D~i~~~~~~----~---~~----~~~~~~~~~L~~Gk~V 81 (611)
...+|.+|+|+|+|||||||+|+.+.+.+. ..+.+++.|.++..... . +. .+...+...+..|..|
T Consensus 456 ~~~~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r~~l~~~~~~~~~~r~~~~~~l~~~a~~~~~~G~~V 535 (632)
T PRK05506 456 KGQKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNVRHGLNRDLGFSDADRVENIRRVAEVARLMADAGLIV 535 (632)
T ss_pred hCCCcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCEE
Confidence 345689999999999999999999998853 34678899998753211 1 11 1224555667889999
Q ss_pred EEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHH
Q 007244 82 FLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRS 122 (611)
Q Consensus 82 IID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl 122 (611)
|+|++++.+..|..++.+ ... .+.+|||++|.++|.+|.
T Consensus 536 ivda~~~~~~~R~~~r~l~~~~--~~~~v~L~~~~e~~~~R~ 575 (632)
T PRK05506 536 LVSFISPFREERELARALHGEG--EFVEVFVDTPLEVCEARD 575 (632)
T ss_pred EEECCCCCHHHHHHHHHhcccC--CeEEEEECCCHHHHHhhC
Confidence 999999999999888777 443 457899999999999995
No 99
>PRK00889 adenylylsulfate kinase; Provisional
Probab=98.83 E-value=2.6e-08 Score=95.99 Aligned_cols=102 Identities=19% Similarity=0.218 Sum_probs=71.0
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEeecchhccCC----CC---cHHHH----HHHHHHHHHCCCcEEE
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINKGK----SG---TKVQC----LTSASSALKKGKSVFL 83 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~---~~~~~Is~D~i~~~~----~~---~~~~~----~~~~~~~L~~Gk~VII 83 (611)
+++.+|+|+|+|||||||+|+.++..+. ..+.+++.|.++... .. .+... ...+...+..|..||+
T Consensus 2 ~~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~~~~~~~~~~~~~~r~~~~~~~~~~a~~~~~~g~~vi~ 81 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVRTNLSKGLGFSKEDRDTNIRRIGFVANLLTRHGVIVLV 81 (175)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 4567999999999999999999988763 235668888765321 11 11111 1233334467888999
Q ss_pred ecCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHH
Q 007244 84 DRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRS 122 (611)
Q Consensus 84 D~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl 122 (611)
|+++.....|..+..+. ..+.+|++++|.+++.+|.
T Consensus 82 ~~~~~~~~~~~~l~~~~---~~~~~v~l~~~~e~~~~R~ 117 (175)
T PRK00889 82 SAISPYRETREEVRANI---GNFLEVFVDAPLEVCEQRD 117 (175)
T ss_pred ecCCCCHHHHHHHHhhc---CCeEEEEEcCCHHHHHHhC
Confidence 99877777776665551 2356899999999999995
No 100
>PRK00625 shikimate kinase; Provisional
Probab=98.82 E-value=2.7e-08 Score=96.67 Aligned_cols=99 Identities=17% Similarity=0.158 Sum_probs=61.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccC---C--CCcHHH------------HHHHHHHHHHCCCcEEEe
Q 007244 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKG---K--SGTKVQ------------CLTSASSALKKGKSVFLD 84 (611)
Q Consensus 22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~---~--~~~~~~------------~~~~~~~~L~~Gk~VIID 84 (611)
.|+|+|+|||||||+++.+++.++.++ ++.|.+-.. . ..+..+ ....+.+.+..+..||..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~--id~D~~I~~~~g~~~~~~i~eif~~~Ge~~fr~~E~~~l~~l~~~~~VIs~ 79 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPF--FDTDDLIVSNYHGALYSSPKEIYQAYGEEGFCREEFLALTSLPVIPSIVAL 79 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCE--EEhhHHHHHHhCCCCCCCHHHHHHHHCHHHHHHHHHHHHHHhccCCeEEEC
Confidence 489999999999999999999998544 777765221 1 011111 112333444444334433
Q ss_pred c--CCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccc
Q 007244 85 R--CNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEH 128 (611)
Q Consensus 85 ~--tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~ 128 (611)
+ +....+.+.. ++..+. +|+++.|.+++.+|+..|...
T Consensus 80 GGg~~~~~e~~~~---l~~~~~---Vv~L~~~~e~l~~Rl~~R~~~ 119 (173)
T PRK00625 80 GGGTLMIEPSYAH---IRNRGL---LVLLSLPIATIYQRLQKRGLP 119 (173)
T ss_pred CCCccCCHHHHHH---HhcCCE---EEEEECCHHHHHHHHhcCCCC
Confidence 3 2233333332 233444 899999999999999988653
No 101
>PLN02842 nucleotide kinase
Probab=98.80 E-value=8.1e-08 Score=106.87 Aligned_cols=100 Identities=25% Similarity=0.348 Sum_probs=68.7
Q ss_pred EEEcCCCCcHHHHHHHHHHHcCCCeEEeecch-hc------------------cCCCCcHHHHHHHHHHHHHC----CCc
Q 007244 24 IMVGAPGSGKSTFCEHVMRSSARPWARICQDT-IN------------------KGKSGTKVQCLTSASSALKK----GKS 80 (611)
Q Consensus 24 vLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~-i~------------------~~~~~~~~~~~~~~~~~L~~----Gk~ 80 (611)
+|.|+|||||||+|+.|++.++ +.+|+.++ ++ ++...+...+...+..++.. ...
T Consensus 1 ~I~G~PGSGKSTqa~~Lak~lg--~~hIs~gdLLR~ev~~~T~iG~~Ire~l~~G~lvPdeiv~~ll~drl~~~~~~~~G 78 (505)
T PLN02842 1 MISGAPASGKGTQCELIVHKFG--LVHISTGDLLRAEVSAGTDIGKRAKEFMNSGRLVPDEIVIAMVTGRLSREDAKEKG 78 (505)
T ss_pred CeeCCCCCCHHHHHHHHHHHhC--CCEEEccHHHHHHhccCCHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhCccccCCc
Confidence 5899999999999999999998 44565433 32 22333334444555555532 245
Q ss_pred EEEecCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244 81 VFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (611)
Q Consensus 81 VIID~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~ 127 (611)
+|||+.+.+..+...+... ...+-.+|+|++|.+++++|+..|..
T Consensus 79 ~ILDGfPRt~~Qa~~Le~~--~~~PDlVI~LDvpdevlleRl~gR~~ 123 (505)
T PLN02842 79 WLLDGYPRSFAQAQSLEKL--KIRPDIFILLDVPDEILIDRCVGRRL 123 (505)
T ss_pred EEEeCCCCcHHHHHHHHhc--CCCCCEEEEEeCCHHHHHHHHhcccc
Confidence 9999988887766554333 11122489999999999999998864
No 102
>PRK13949 shikimate kinase; Provisional
Probab=98.79 E-value=3.8e-08 Score=95.12 Aligned_cols=95 Identities=15% Similarity=0.147 Sum_probs=59.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCC-----------Cc--HHHHHHHHHHHHHCCCcEEE-ecCC-
Q 007244 23 VIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKS-----------GT--KVQCLTSASSALKKGKSVFL-DRCN- 87 (611)
Q Consensus 23 IvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~-----------~~--~~~~~~~~~~~L~~Gk~VII-D~tn- 87 (611)
|+|+|+|||||||+++.|++.++.++ ++.|.+..... +. ..+....+...|.....+|| .+..
T Consensus 4 I~liG~~GsGKstl~~~La~~l~~~~--id~D~~i~~~~~~~~~~~~~~~g~~~fr~~e~~~l~~l~~~~~~vis~Ggg~ 81 (169)
T PRK13949 4 IFLVGYMGAGKTTLGKALARELGLSF--IDLDFFIENRFHKTVGDIFAERGEAVFRELERNMLHEVAEFEDVVISTGGGA 81 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCe--ecccHHHHHHHCccHHHHHHHhCHHHHHHHHHHHHHHHHhCCCEEEEcCCcc
Confidence 89999999999999999999999554 77776632111 11 01122233333443445566 4422
Q ss_pred -CCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhc
Q 007244 88 -LEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKR 125 (611)
Q Consensus 88 -l~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R 125 (611)
.....+..+ +..+. +|||++|.+++.+|+..+
T Consensus 82 ~~~~~~~~~l---~~~~~---vi~L~~~~~~~~~Ri~~~ 114 (169)
T PRK13949 82 PCFFDNMELM---NASGT---TVYLKVSPEVLFVRLRLA 114 (169)
T ss_pred cCCHHHHHHH---HhCCe---EEEEECCHHHHHHHHhcC
Confidence 233344433 34454 789999999999999754
No 103
>PRK06696 uridine kinase; Validated
Probab=98.78 E-value=5.5e-08 Score=97.82 Aligned_cols=103 Identities=20% Similarity=0.221 Sum_probs=67.3
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchhccCCC-----------------CcHHHHHHHHHHHH-
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGKS-----------------GTKVQCLTSASSAL- 75 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D~i~~~~~-----------------~~~~~~~~~~~~~L- 75 (611)
...|.+|.+.|+|||||||||++|++.+ +..+.+++.|.+...+. ..+..+.+.+...+
T Consensus 19 ~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~~~~~r~~~~~~~~~g~~~~~~d~~~L~~~l~~~l~ 98 (223)
T PRK06696 19 LTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHNPRVIRYRRGRESAEGYYEDAYDYTALRRLLLDPLG 98 (223)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccCCHHHHHHcCCCChhhcCccccCHHHHHHHHHhhcc
Confidence 5678999999999999999999999987 44566778887742110 01111111111111
Q ss_pred ---------------------------HCCCcEEEecCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244 76 ---------------------------KKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (611)
Q Consensus 76 ---------------------------~~Gk~VIID~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~ 127 (611)
..+..+|+|+..+.......+.+ ..||+++|.+++.+|+..|..
T Consensus 99 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~vviveg~~l~~~~~~~~~d--------~~i~v~~~~e~~~~R~~~Rd~ 169 (223)
T PRK06696 99 PNGDRQYRTASHDLKTDIPVHNPPLLAAPNAVLIVDGTFLLRPELRDLWD--------YKIFLDTDFEVSRRRGAKRDT 169 (223)
T ss_pred CCCceeEeeeeeccccCcccCCCceecCCCCEEEEecHHHhhhhHHhhCC--------EEEEEECCHHHHHHHHHHhhh
Confidence 12334778886554433333322 389999999999999999974
No 104
>cd02907 Macro_Af1521_BAL_like Macro domain, Af1521- and BAL-like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. The macro domains in this family show similarity to Af1521, a protein from Archaeoglobus fulgidus containing a stand-alone macro domain. Af1521 binds ADP-ribose and exhibits phosphatase activity toward Appr-1"-p. Also included in this family are the N-terminal (or first) macro domains
Probab=98.77 E-value=7.1e-09 Score=100.71 Aligned_cols=112 Identities=16% Similarity=0.141 Sum_probs=80.2
Q ss_pred CCchhhhhhHHHHHHhhc-CCCCCCCCCCCCCCCCCCcccccccccccccceeeccccccc-ccccCCCCcchhhhcccC
Q 007244 194 NPDAKIQLGIMKFLKKVD-APSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAG-EEVKGTENPEVASVNQNG 271 (611)
Q Consensus 194 ~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~ 271 (611)
......++.+++.++..- +......|++ . .|.+.++.|.++-|.+.|.|..+. ..........-.+|++.+
T Consensus 36 ai~~~~G~~l~~e~~~~~~~~g~~~~G~~-----~--~T~~~~L~~k~IiH~v~P~~~~~~~~~~~~~L~~~~~~~L~~a 108 (175)
T cd02907 36 AIVKAGGPEIQEESDEYVRKNGPVPTGEV-----V--VTSAGKLPCKYVIHAVGPRWSGGEAEECVEKLKKAILNSLRKA 108 (175)
T ss_pred HHHHHHhHHHHHHHHHHHHhcCCCCCCcE-----E--EecCCCCCCCEEEEeCCCcCCCCCCchHHHHHHHHHHHHHHHH
Confidence 344555677777665441 1112222332 1 245567789999999999987632 122233344556788999
Q ss_pred CCCCCCccccccCccCCCCCChHHHHHHHHHHHHHHHHhcC
Q 007244 272 SSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLG 312 (611)
Q Consensus 272 ~~~~~~SiAfPaIStGi~gfP~~~aa~Iiv~tv~~f~~~~~ 312 (611)
..++++|||||+||||+||||.++||+++++++.+|+.+++
T Consensus 109 ~~~~~~SIA~P~lgtG~~g~p~~~~a~~~~~~i~~fl~~~~ 149 (175)
T cd02907 109 EELGLRSIAIPAISSGIFGFPLERCVETIVEAVKEFLETKG 149 (175)
T ss_pred HHcCCCEEEECCcccCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999853
No 105
>PRK05480 uridine/cytidine kinase; Provisional
Probab=98.77 E-value=1.5e-07 Score=93.45 Aligned_cols=119 Identities=25% Similarity=0.352 Sum_probs=75.4
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHcC-CCeEEeecchhccCC------------C-----CcHHHHHHHHHHHHHCC-
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSSA-RPWARICQDTINKGK------------S-----GTKVQCLTSASSALKKG- 78 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~-~~~~~Is~D~i~~~~------------~-----~~~~~~~~~~~~~L~~G- 78 (611)
.+|.+|.|+|+|||||||+++.|.+.++ ..+..++.|.+.... + ..+..+.+.+.. |..|
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-l~~~~ 82 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYYKDQSHLSFEERVKTNYDHPDAFDHDLLIEHLKA-LKAGK 82 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCccccCcccCCHHHhcccCccCcccccHHHHHHHHHH-HHcCC
Confidence 5788999999999999999999999884 235567887763211 0 012222233322 2222
Q ss_pred ------------------------CcEEEecCCCCH-HHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCC
Q 007244 79 ------------------------KSVFLDRCNLER-EQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQ 133 (611)
Q Consensus 79 ------------------------k~VIID~tnl~~-~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~ 133 (611)
..+|+|+..+.. .....+.++ .|++++|.++++.|...|....+
T Consensus 83 ~v~~p~~d~~~~~~~~~~~~~~~~~~vivEg~~l~~~~~~~~~~d~--------~I~v~~~~~~~~~R~~~Rd~~~r--- 151 (209)
T PRK05480 83 AIEIPVYDYTEHTRSKETIRVEPKDVIILEGILLLEDERLRDLMDI--------KIFVDTPLDIRLIRRLKRDVNER--- 151 (209)
T ss_pred ccccCcccccccccCCCeEEeCCCCEEEEEeehhcCchhHhhhhce--------eEEEeCChhHHHHHHHhhcchhc---
Confidence 137778755432 222233333 88999999999999999975332
Q ss_pred CCCHHHHHHHHHhhc
Q 007244 134 GGKAAAVVNRMLQKK 148 (611)
Q Consensus 134 ~~vpeevi~rm~~~~ 148 (611)
+..+++++.++.++.
T Consensus 152 g~~~e~~~~~~~~~~ 166 (209)
T PRK05480 152 GRSLESVINQYLSTV 166 (209)
T ss_pred CCCHHHHHHHHHHhh
Confidence 146677777666553
No 106
>cd02903 Macro_BAL_like Macro domain, BAL_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family show similarity to BAL (B-aggressive lymphoma) proteins, which contain one to three macro domains. Most BAL family macro domains belong to this family except for the most N-terminal domain in multiple-domain containing proteins. Most BAL proteins also contain a C-termin
Probab=98.77 E-value=3e-09 Score=99.47 Aligned_cols=100 Identities=12% Similarity=0.122 Sum_probs=75.2
Q ss_pred chhhhhhHHHHHHhhcCCCCCCCCCCCCCCCCCCcccccccccccccceeecccccccccccCCCCcchhhhcccCCCCC
Q 007244 196 DAKIQLGIMKFLKKVDAPSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGEEVKGTENPEVASVNQNGSSSD 275 (611)
Q Consensus 196 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 275 (611)
....++.+++.+++...... .+++. .|.+.++.|.+.-|.+.|.|..+ ........-.+|++.+.+.+
T Consensus 38 ~~~~G~~l~~~~~~~~~~~~--~G~~~-------vT~~~~L~~k~IiH~~~p~~~~~---~~~~l~~~~~~~L~~a~~~~ 105 (137)
T cd02903 38 LRKAGPELQKELDKAKLGQT--VGSVI-------VTKGGNLPCKYVYHVVLPNWSNG---ALKILKDIVSECLEKCEELS 105 (137)
T ss_pred HHhccHHHHHHHHHHcCCCC--CCeEE-------EecCCCCCCCEEEEecCCCCCCc---hHHHHHHHHHHHHHHHHHCC
Confidence 34456778888877655443 12221 25566788999999999988862 11222223456789999999
Q ss_pred CCccccccCccCCCCCChHHHHHHHHHHHHHH
Q 007244 276 VPTLAFPSLSTSDFQFNNEKASDVIIEKVEEF 307 (611)
Q Consensus 276 ~~SiAfPaIStGi~gfP~~~aa~Iiv~tv~~f 307 (611)
++|||||+||||+||||.++||+++++++.+|
T Consensus 106 ~~SIAfP~igtG~~g~p~~~~A~~~~~~i~~f 137 (137)
T cd02903 106 YTSISFPAIGTGNLGFPKDVVAKIMFDEVFKF 137 (137)
T ss_pred CcEEEECCCcCcCCCCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999876
No 107
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=98.75 E-value=9.1e-08 Score=89.44 Aligned_cols=98 Identities=16% Similarity=0.198 Sum_probs=62.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCc-------------HHHHHHHHHHHHHCCCcEEEecCC--
Q 007244 23 VIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGT-------------KVQCLTSASSALKKGKSVFLDRCN-- 87 (611)
Q Consensus 23 IvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~-------------~~~~~~~~~~~L~~Gk~VIID~tn-- 87 (611)
|+|+|+|||||||+|+.|++.++.+ .++.|.+.....+. +......+...+..+..+||+...
T Consensus 2 i~l~G~~GsGKstla~~la~~l~~~--~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~vi~~g~~~ 79 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGLP--FVDLDELIEQRAGMSIPEIFAEEGEEGFRELEREVLLLLLTKENAVIATGGGA 79 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCC--EEEchHHHHHHcCCCHHHHHHHHCHHHHHHHHHHHHHHHhccCCcEEECCCCc
Confidence 7899999999999999999999844 47777664221110 011112233344444566666432
Q ss_pred -CCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccc
Q 007244 88 -LEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEH 128 (611)
Q Consensus 88 -l~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~ 128 (611)
+....|+.+ ...+ .+||+++|.+++.+|+..|..+
T Consensus 80 i~~~~~~~~~---~~~~---~~i~l~~~~e~~~~R~~~r~~r 115 (154)
T cd00464 80 VLREENRRLL---LENG---IVVWLDASPEELLERLARDKTR 115 (154)
T ss_pred cCcHHHHHHH---HcCC---eEEEEeCCHHHHHHHhccCCCC
Confidence 333332222 3333 4889999999999999998744
No 108
>PRK04040 adenylate kinase; Provisional
Probab=98.75 E-value=1.3e-07 Score=93.19 Aligned_cols=148 Identities=12% Similarity=0.149 Sum_probs=78.1
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhc------cCCCCcH-----------HHHHHHHH---HHHHCC
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN------KGKSGTK-----------VQCLTSAS---SALKKG 78 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~------~~~~~~~-----------~~~~~~~~---~~L~~G 78 (611)
+|.+|+++|+|||||||+++.+.+.++..+.+++.+.+. .+....+ .+....+. +.+..+
T Consensus 1 ~~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~~~~~a~~~g~~~~~d~~r~l~~~~~~~~~~~a~~~i~~~~~~ 80 (188)
T PRK04040 1 MMKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDVMLEVAKEEGLVEHRDEMRKLPPEEQKELQREAAERIAEMAGE 80 (188)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecchHHHHHHHHcCCCCCHHHHhhCChhhhHHHHHHHHHHHHHhhcC
Confidence 467999999999999999999999983124456655441 1211111 11112222 223446
Q ss_pred CcEEEecC--------CCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHh---cccccCCCCCCCHHHHHHHHHhh
Q 007244 79 KSVFLDRC--------NLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVK---RIEHEGNLQGGKAAAVVNRMLQK 147 (611)
Q Consensus 79 k~VIID~t--------nl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~---R~~~~g~~~~~vpeevi~rm~~~ 147 (611)
..+|+|+- ++....+.-+ +.... -.+|++.+|.++.++|... |.+ ..+.++.+-.++...
T Consensus 81 ~~~~~~~h~~i~~~~g~~~~~~~~~~---~~l~p-d~ii~l~a~p~~i~~Rrl~d~~R~R-----~~es~e~I~~~~~~a 151 (188)
T PRK04040 81 GPVIVDTHATIKTPAGYLPGLPEWVL---EELNP-DVIVLIEADPDEILMRRLRDETRRR-----DVETEEDIEEHQEMN 151 (188)
T ss_pred CCEEEeeeeeeccCCCCcCCCCHHHH---hhcCC-CEEEEEeCCHHHHHHHHhcccccCC-----CCCCHHHHHHHHHHH
Confidence 67999991 1111111112 12222 2366777777777776653 222 114455555555443
Q ss_pred ccC----CCccCCccEEEEcCChhhHHHHHHHh
Q 007244 148 KEL----PKLSEGFSRITLCQNENDVQAALDTY 176 (611)
Q Consensus 148 ~e~----P~~~EgFd~V~vv~~~~evd~av~~~ 176 (611)
... -.....|+.++++++ ..++.++..+
T Consensus 152 ~~~a~~~a~~~g~~~~iI~N~d-~~~e~a~~~i 183 (188)
T PRK04040 152 RAAAMAYAVLTGATVKIVENRE-GLLEEAAEEI 183 (188)
T ss_pred HHHHHHHHHhcCCeEEEEECCC-CCHHHHHHHH
Confidence 221 112344677776654 2266665543
No 109
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=98.74 E-value=4.7e-08 Score=94.07 Aligned_cols=138 Identities=16% Similarity=0.236 Sum_probs=79.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhcc-C-------CCCcHHHHHHHHHHHHH---CCCcEEEecCCCCH
Q 007244 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK-G-------KSGTKVQCLTSASSALK---KGKSVFLDRCNLER 90 (611)
Q Consensus 22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~-~-------~~~~~~~~~~~~~~~L~---~Gk~VIID~tnl~~ 90 (611)
+|.++|.||+||||+|++|. .++..+.+++ |.+.. + .+.+..--...++.++. ...+.|+|.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~-el~~e~~~~~~~de~r~s~~vD~d~~~~~le~~~~~~~~Ivd~----- 74 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN-ELAKENGLYTEYDELRKSVIVDVDKLRKRLEELLREGSGIVDS----- 74 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHH-HHHHhcCCeeccCCccceEEeeHHHHHHHHHHHhccCCeEeec-----
Confidence 68999999999999999999 8885554444 22221 1 11111100133333443 457889998
Q ss_pred HHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhccCCCccCCccEEEEcC-ChhhH
Q 007244 91 EQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQ-NENDV 169 (611)
Q Consensus 91 ~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~e~P~~~EgFd~V~vv~-~~~ev 169 (611)
....++ .... .+|+|.++.+++.+|+..|+.++......+..+++.-.+. ...|.|+.++.++ .....
T Consensus 75 -H~~hl~--~~~d---lVvVLR~~p~~L~~RLk~RGy~~eKI~ENveAEi~~vi~~-----EA~E~~~~v~evdtt~~s~ 143 (180)
T COG1936 75 -HLSHLL--PDCD---LVVVLRADPEVLYERLKGRGYSEEKILENVEAEILDVILI-----EAVERFEAVIEVDTTNRSP 143 (180)
T ss_pred -hhhhcC--CCCC---EEEEEcCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH-----HHHHhcCceEEEECCCCCH
Confidence 333332 2122 3889999999999999999985432111122222222221 1235556666665 45566
Q ss_pred HHHHHHhc
Q 007244 170 QAALDTYS 177 (611)
Q Consensus 170 d~av~~~~ 177 (611)
++++..+.
T Consensus 144 ee~~~~i~ 151 (180)
T COG1936 144 EEVAEEII 151 (180)
T ss_pred HHHHHHHH
Confidence 66665554
No 110
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=98.73 E-value=1.5e-07 Score=93.49 Aligned_cols=104 Identities=19% Similarity=0.223 Sum_probs=71.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccC-------C-------------CCc--H-----------H
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKG-------K-------------SGT--K-----------V 65 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~-------~-------------~~~--~-----------~ 65 (611)
.+.+|+++|+|||||||+|+.+++.++..+ ++..|.+++. . +.. . .
T Consensus 2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~~~-~~~~D~~r~~~r~~~~~~p~l~~s~~~a~~~~~~~~~~~~~~~y~~q~~ 80 (197)
T PRK12339 2 ESTIHFIGGIPGVGKTSISGYIARHRAIDI-VLSGDYLREFLRPYVDDEPVLAKSVYDAWEFYGSMTDENIVKGYLDQAR 80 (197)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCeE-EehhHHHHHHHHHhcCCCCCcccccHHHHHHcCCcchhHHHHHHHHHHH
Confidence 467999999999999999999999987433 5666665320 0 000 0 0
Q ss_pred ----HHHHHHHHHHHCCCcEEEecCCCCHHHHHHHHHhCCCCCeEEEEEEe-CCHHHHHHHHHhcccc
Q 007244 66 ----QCLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLD-LPAKLCISRSVKRIEH 128 (611)
Q Consensus 66 ----~~~~~~~~~L~~Gk~VIID~tnl~~~~R~~~~~l~~~~~~v~vV~Ld-~p~e~~~~Rl~~R~~~ 128 (611)
.+...+.+.+.+|.++|+|++++....+... ...+. .++++. .+.+++.+|+..|...
T Consensus 81 ~v~~~L~~va~~~l~~G~sVIvEgv~l~p~~~~~~---~~~~v--~~i~l~v~d~e~lr~Rl~~R~~~ 143 (197)
T PRK12339 81 AIMPGINRVIRRALLNGEDLVIESLYFHPPMIDEN---RTNNI--RAFYLYIRDAELHRSRLADRINY 143 (197)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEecCcCHHHHHHH---HhcCe--EEEEEEeCCHHHHHHHHHHHhhc
Confidence 0224567889999999999999888776432 22222 344444 3688888999999864
No 111
>PRK00431 RNase III inhibitor; Provisional
Probab=98.73 E-value=1.1e-08 Score=99.66 Aligned_cols=119 Identities=11% Similarity=0.137 Sum_probs=84.3
Q ss_pred CCchhhhhhHHHHHHhhcCC-CCCCCCCCCCCCCCCCcccccccccccccceeecccccccccccCCCCcchhhhcccCC
Q 007244 194 NPDAKIQLGIMKFLKKVDAP-SNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGEEVKGTENPEVASVNQNGS 272 (611)
Q Consensus 194 ~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 272 (611)
......++.+++.+++.-.. .....+++ . .|...++.|.+..|++.|.|..........+...-.+|+..+.
T Consensus 37 aI~~~~G~~l~~e~~~~~~~~~~l~~G~~-----~--~T~~~~l~~~~IiH~v~P~~~~~~~~~~~~L~~~~~~~L~~a~ 109 (177)
T PRK00431 37 AIHRAAGPEILEECRELRQQQGPCPTGEA-----V--ITSAGRLPAKYVIHTVGPVWRGGEDNEAELLASAYRNSLRLAA 109 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCeE-----E--EecCCCCCCCEEEEecCCeecCCCCcHHHHHHHHHHHHHHHHH
Confidence 34455567788877766322 22222333 1 2455678899999999999875322223344445567888899
Q ss_pred CCCCCccccccCccCCCCCChHHHHHHHHHHHHHHHHhcCCe-EEEEe
Q 007244 273 SSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGNA-RLVLV 319 (611)
Q Consensus 273 ~~~~~SiAfPaIStGi~gfP~~~aa~Iiv~tv~~f~~~~~~i-~iV~v 319 (611)
+.+++|||||+||||+||||.++||+++++++.+|+.....+ .++++
T Consensus 110 ~~~~~sIa~P~lgtG~~g~p~~~~A~~~~~~i~~f~~~~~~l~~I~~v 157 (177)
T PRK00431 110 ELGLRSIAFPAISTGVYGYPLEDAARIAVKTVREFLTRHKSPEEVYFV 157 (177)
T ss_pred HcCCceEEECccccCccCCCHHHHHHHHHHHHHHHHhcCCCcCEEEEE
Confidence 999999999999999999999999999999999998765543 34443
No 112
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=98.72 E-value=4.4e-08 Score=92.01 Aligned_cols=114 Identities=20% Similarity=0.304 Sum_probs=78.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhc-----cC-------CCCcHHHHHHHHHHHHHCCCcEEEecCCCC
Q 007244 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN-----KG-------KSGTKVQCLTSASSALKKGKSVFLDRCNLE 89 (611)
Q Consensus 22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~-----~~-------~~~~~~~~~~~~~~~L~~Gk~VIID~tnl~ 89 (611)
-|+++|-||+||||+|.++++.++..|.-|+ |.++ .+ .....+.+++.+..+|..|. .|||- +..
T Consensus 9 NILvtGTPG~GKstl~~~lae~~~~~~i~is-d~vkEn~l~~gyDE~y~c~i~DEdkv~D~Le~~m~~Gg-~IVDy-HgC 85 (176)
T KOG3347|consen 9 NILVTGTPGTGKSTLAERLAEKTGLEYIEIS-DLVKENNLYEGYDEEYKCHILDEDKVLDELEPLMIEGG-NIVDY-HGC 85 (176)
T ss_pred CEEEeCCCCCCchhHHHHHHHHhCCceEehh-hHHhhhcchhcccccccCccccHHHHHHHHHHHHhcCC-cEEee-ccc
Confidence 4889999999999999999999996664443 2221 11 12234557788888888854 55665 333
Q ss_pred HHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHh
Q 007244 90 REQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQ 146 (611)
Q Consensus 90 ~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~ 146 (611)
--...+|+++ +|+|.+|.+++.+|+..|+.+..........+++--.++
T Consensus 86 d~Fperwfdl--------VvVLr~~~s~LY~RL~sRgY~e~Ki~eNiecEIfgv~~e 134 (176)
T KOG3347|consen 86 DFFPERWFDL--------VVVLRTPNSVLYDRLKSRGYSEKKIKENIECEIFGVVLE 134 (176)
T ss_pred CccchhheeE--------EEEEecCchHHHHHHHHcCCCHHHHhhhcchHHHHHHHH
Confidence 3356677666 899999999999999999986533333334444444443
No 113
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=98.72 E-value=8.3e-08 Score=94.69 Aligned_cols=127 Identities=16% Similarity=0.092 Sum_probs=75.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCC--------------C----------CcH-----------
Q 007244 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGK--------------S----------GTK----------- 64 (611)
Q Consensus 20 p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~--------------~----------~~~----------- 64 (611)
+.+|.|+|++||||||+++.+.+ ++ +.+++.|.+.... + ..+
T Consensus 2 ~~~i~ltG~~gsGKst~~~~l~~-~g--~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~ 78 (194)
T PRK00081 2 MLIIGLTGGIGSGKSTVANLFAE-LG--APVIDADAIAHEVVEPGGPALQAIVEAFGPEILDADGELDRAKLRELVFSDP 78 (194)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH-cC--CEEEEecHHHHHHhhccHHHHHHHHHHhCHHhcCCCCCcCHHHHHHHHhCCH
Confidence 46899999999999999999887 77 5668877662100 0 000
Q ss_pred -----------HHHHHHHHHHHHCC---CcEEEecCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccC
Q 007244 65 -----------VQCLTSASSALKKG---KSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEG 130 (611)
Q Consensus 65 -----------~~~~~~~~~~L~~G---k~VIID~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g 130 (611)
..+...+.+.+... ..+|+|..-+.......+ .+ .+|++++|.++..+|+.+|..
T Consensus 79 ~~~~~L~~i~hP~v~~~~~~~~~~~~~~~~vv~e~pll~e~~~~~~-----~D---~vi~V~a~~e~~~~Rl~~R~~--- 147 (194)
T PRK00081 79 EARKKLEAILHPLIREEILEQLQEAESSPYVVLDIPLLFENGLEKL-----VD---RVLVVDAPPETQLERLMARDG--- 147 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccCCEEEEEehHhhcCCchhh-----CC---eEEEEECCHHHHHHHHHHcCC---
Confidence 01113333334333 568888844333222222 22 388999999999999999864
Q ss_pred CCCCCCHHHHHHHHHhhccCCCccCCccEEEEcC
Q 007244 131 NLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQ 164 (611)
Q Consensus 131 ~~~~~vpeevi~rm~~~~e~P~~~EgFd~V~vv~ 164 (611)
...++...|+..++.........+.|+.++
T Consensus 148 ----~s~e~~~~ri~~Q~~~~~~~~~ad~vI~N~ 177 (194)
T PRK00081 148 ----LSEEEAEAIIASQMPREEKLARADDVIDNN 177 (194)
T ss_pred ----CCHHHHHHHHHHhCCHHHHHHhCCEEEECC
Confidence 344566666665542222223334454443
No 114
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=98.68 E-value=1e-07 Score=88.07 Aligned_cols=94 Identities=19% Similarity=0.300 Sum_probs=60.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCC----------cHHHHHHHHHHHHHCCCcEEEecCCCCHH
Q 007244 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG----------TKVQCLTSASSALKKGKSVFLDRCNLERE 91 (611)
Q Consensus 22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~----------~~~~~~~~~~~~L~~Gk~VIID~tnl~~~ 91 (611)
+|+|+|+|||||||+|++|++.++.++ ++.|.+....+. ............+..+..+|+|+...
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~~~~--~~~~~i~~e~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~Vidg~~~--- 75 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLGLPY--LDTGGIRTEEVGKLASEVAAIPEVRKALDERQRELAKKPGIVLEGRDI--- 75 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCce--eccccCCHHHHHHHHHHhcccHhHHHHHHHHHHHHhhCCCEEEEeeee---
Confidence 589999999999999999999998555 666644321111 11111222333355566899999432
Q ss_pred HHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcc
Q 007244 92 QRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRI 126 (611)
Q Consensus 92 ~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~ 126 (611)
.+. + .+....+|++..|.+++.+|+.+|.
T Consensus 76 ---~~~-~--~~~~~~~i~l~~~~~~r~~R~~~r~ 104 (147)
T cd02020 76 ---GTV-V--FPDADLKIFLTASPEVRAKRRAKQL 104 (147)
T ss_pred ---eeE-E--cCCCCEEEEEECCHHHHHHHHHHHH
Confidence 111 1 1112247899999999999999964
No 115
>COG2110 Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 [General function prediction only]
Probab=98.67 E-value=9.3e-09 Score=100.06 Aligned_cols=80 Identities=15% Similarity=0.191 Sum_probs=68.9
Q ss_pred ccccccccccccceeecccccccccccCCCCcchhhhcccCCCCCCCccccccCccCCCCCChHHHHHHHHHHHHHHHHh
Q 007244 231 ITEEKNSCLEGQEITSLLSDAAGEEVKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNK 310 (611)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~SiAfPaIStGi~gfP~~~aa~Iiv~tv~~f~~~ 310 (611)
|...+++...+-|.+.+.|..++....+.+-...-.++..+.+++++|||||+||||+||||.+++++|+++++.+|+..
T Consensus 70 t~~~~l~a~~ViH~vgp~~~~g~~~~~e~l~~a~~~~l~~a~~~g~~SiAfPaistGv~G~p~~~aa~i~~~~v~~~~~~ 149 (179)
T COG2110 70 TEAGRLPAKYVIHTVGPSWRGGSKDEAELLAAAYRAALRLAKEAGVRSVAFPAISTGVYGFPLEEAARIAVEAVKDFLPE 149 (179)
T ss_pred ccCcCCCCCEEEecCCCcccCCChhHHHHHHHHHHHHHHHHHHcCCceeecccccCcccCCCHHHHHHHHHHHHHHhccc
Confidence 55567778899999999887765555556666777788999999999999999999999999999999999999999975
No 116
>PRK04182 cytidylate kinase; Provisional
Probab=98.67 E-value=3.3e-07 Score=87.80 Aligned_cols=94 Identities=18% Similarity=0.258 Sum_probs=59.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh-cc-----CCC----------Cc-HHHHHHHHHHHHH-CCCcEEE
Q 007244 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-NK-----GKS----------GT-KVQCLTSASSALK-KGKSVFL 83 (611)
Q Consensus 22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i-~~-----~~~----------~~-~~~~~~~~~~~L~-~Gk~VII 83 (611)
+|+|+|+|||||||+|+.|++.++.+ +++.|.+ +. +.. .. ...........+. .+.++|+
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~--~id~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi 79 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLK--HVSAGEIFRELAKERGMSLEEFNKYAEEDPEIDKEIDRRQLEIAEKEDNVVL 79 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCc--EecHHHHHHHHHHHcCCCHHHHHHHhhcCchHHHHHHHHHHHHHhcCCCEEE
Confidence 69999999999999999999999844 4764432 11 100 00 0111122222333 6678899
Q ss_pred ecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244 84 DRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (611)
Q Consensus 84 D~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~ 127 (611)
|+... .+ + +.. ...+|+|++|.+++.+|+..|..
T Consensus 80 ~g~~~------~~--~~~~~--~~~~V~l~a~~e~~~~Rl~~r~~ 114 (180)
T PRK04182 80 EGRLA------GW--MAKDY--ADLKIWLKAPLEVRAERIAEREG 114 (180)
T ss_pred EEeec------ce--EecCC--CCEEEEEECCHHHHHHHHHhccC
Confidence 88321 11 2 221 23578999999999999998864
No 117
>PRK13975 thymidylate kinase; Provisional
Probab=98.65 E-value=4.3e-07 Score=88.72 Aligned_cols=107 Identities=21% Similarity=0.263 Sum_probs=61.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh-----c----cCCCCc----------HHHHHHHHHHHHHCCC
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-----N----KGKSGT----------KVQCLTSASSALKKGK 79 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i-----~----~~~~~~----------~~~~~~~~~~~L~~Gk 79 (611)
|+.+|++.|++||||||+++.|++.++..+.....|.. + .+.... +.+.+..+...+.. .
T Consensus 1 m~~~I~ieG~~GsGKtT~~~~L~~~l~~~~~~~~~~~~~g~~ir~~~~~~~~~~~~~~~~f~~~r~~~~~~i~~~~~~-~ 79 (196)
T PRK13975 1 MNKFIVFEGIDGSGKTTQAKLLAEKLNAFWTCEPTDGKIGKLIREILSGSKCDKETLALLFAADRVEHVKEIEEDLKK-R 79 (196)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCeeECCCCChHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-C
Confidence 45799999999999999999999998743322222211 1 110110 01112334444444 6
Q ss_pred cEEEecCCCCHHHH-------HHHH-Hh-CCCCCeEEEEEEeCCHHHHHHHHHhcc
Q 007244 80 SVFLDRCNLEREQR-------TDFV-KL-GGPEVDVHAVVLDLPAKLCISRSVKRI 126 (611)
Q Consensus 80 ~VIID~tnl~~~~R-------~~~~-~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~ 126 (611)
.||+|...+..... ..+. .+ .....+-.+|+|++|.+++.+|+..|.
T Consensus 80 ~vi~DRy~~S~~a~~~~~g~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~Rl~~r~ 135 (196)
T PRK13975 80 DVVCDRYVYSSIAYQSVQGIDEDFIYSINRYAKKPDLVFLLDVDIEEALKRMETRD 135 (196)
T ss_pred EEEEECchhHHHHHhcccCCCHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHhccC
Confidence 78999643321000 0111 11 111112258899999999999999886
No 118
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=98.64 E-value=2.6e-07 Score=87.85 Aligned_cols=95 Identities=21% Similarity=0.251 Sum_probs=60.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhcc------CCCC-----------cHHHHH-HHHHHHHHCCCcEEE
Q 007244 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK------GKSG-----------TKVQCL-TSASSALKKGKSVFL 83 (611)
Q Consensus 22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~------~~~~-----------~~~~~~-~~~~~~L~~Gk~VII 83 (611)
+|++.|+|||||||+|+.+++.++.+ +++.|.+.. +... ...... ..+......+..+||
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~Vi 79 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLSLK--LISAGDIFRELAAKMGLDLIEFLNYAEENPEIDKKIDRRIHEIALKEKNVVL 79 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCc--eecHHHHHHHHHHHcCCCHHHHHHHHhcCcHHHHHHHHHHHHHHhcCCCEEE
Confidence 79999999999999999999998844 477654321 1000 001111 223333336678999
Q ss_pred ecCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244 84 DRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (611)
Q Consensus 84 D~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~ 127 (611)
|+.... |. ++.. .. ..|++++|.+++.+|+.+|..
T Consensus 80 ~g~~~~------~~-~~~~-~d-~~v~v~a~~~~r~~R~~~R~~ 114 (171)
T TIGR02173 80 ESRLAG------WI-VREY-AD-VKIWLKAPLEVRARRIAKREG 114 (171)
T ss_pred Eecccc------ee-ecCC-cC-EEEEEECCHHHHHHHHHHccC
Confidence 984321 10 1111 11 478999999999999999975
No 119
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=98.64 E-value=2.9e-07 Score=87.69 Aligned_cols=95 Identities=20% Similarity=0.259 Sum_probs=65.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccC------C-----------CCcHHHHHHHHHHHHHCCCcEEEe
Q 007244 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKG------K-----------SGTKVQCLTSASSALKKGKSVFLD 84 (611)
Q Consensus 22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~------~-----------~~~~~~~~~~~~~~L~~Gk~VIID 84 (611)
+|.+.|+|||||||+|+.|++.++ +.+++...++.+ . ....+...+.-...+....++|++
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~g--l~~vsaG~iFR~~A~e~gmsl~ef~~~AE~~p~iD~~iD~rq~e~a~~~nvVle 79 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLG--LKLVSAGTIFREMARERGMSLEEFSRYAEEDPEIDKEIDRRQKELAKEGNVVLE 79 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhC--CceeeccHHHHHHHHHcCCCHHHHHHHHhcCchhhHHHHHHHHHHHHcCCeEEh
Confidence 689999999999999999999999 445775444321 0 011222223333344447889999
Q ss_pred cCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244 85 RCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (611)
Q Consensus 85 ~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~ 127 (611)
+ .-..|+-. .+.-..|||..|.++..+|+.+|..
T Consensus 80 g------rLA~Wi~k---~~adlkI~L~Apl~vRa~Ria~REg 113 (179)
T COG1102 80 G------RLAGWIVR---EYADLKIWLKAPLEVRAERIAKREG 113 (179)
T ss_pred h------hhHHHHhc---cccceEEEEeCcHHHHHHHHHHhcC
Confidence 8 44555322 2333478999999999999999986
No 120
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.64 E-value=9.3e-08 Score=85.96 Aligned_cols=94 Identities=27% Similarity=0.394 Sum_probs=53.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh-c-cCCC----C--cH-H---HHHHHHHHHHH---CCCcEEEecC
Q 007244 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-N-KGKS----G--TK-V---QCLTSASSALK---KGKSVFLDRC 86 (611)
Q Consensus 22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i-~-~~~~----~--~~-~---~~~~~~~~~L~---~Gk~VIID~t 86 (611)
+|+|+|+|||||||+|+.|++.++ +.+++.|.+ . .++. . .. . +........+. .+..+|+|+.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~--~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ii~g~ 78 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLG--FPVISMDDLIREPGWIERDDDEREYIDADIDLLDDILEQLQNKPDNDNWIIDGS 78 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT--CEEEEEHHHHCCGTHCHGCTTCCHHHHHHHHHHHHHHHHHHETTT--EEEEECC
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC--CeEEEecceEEeccccccCcchhhHHHHHHHHHHHHHHhhhccCCCCeEEEeCC
Confidence 589999999999999999999998 556777774 1 1111 1 11 1 11223333332 4567999994
Q ss_pred CCCHHH--HHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcc
Q 007244 87 NLEREQ--RTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRI 126 (611)
Q Consensus 87 nl~~~~--R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~ 126 (611)
.. ... +.... ..+|++..|.+++..|..+|.
T Consensus 79 ~~-~~~~~~~~~~--------~~~i~l~~~~~~~~~~~~~R~ 111 (121)
T PF13207_consen 79 YE-SEMEIRLPEF--------DHVIYLDAPDEECRERRLKRR 111 (121)
T ss_dssp SC-HCCHSCCHHG--------GCEEEEEEEEHHHHHHHHHHH
T ss_pred Cc-cchhhhhhcC--------CEEEEEECCCHHHHHHHHHHH
Confidence 33 211 11111 136677777765555555553
No 121
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=98.62 E-value=2.8e-07 Score=104.62 Aligned_cols=147 Identities=13% Similarity=0.159 Sum_probs=86.8
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCC-cH------------HHHHHHHHHHHHCCCcEEEe
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG-TK------------VQCLTSASSALKKGKSVFLD 84 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~-~~------------~~~~~~~~~~L~~Gk~VIID 84 (611)
.....|+|+|+|||||||+++.|++.++.+| ++.|.+-....+ +. .++...+.+.+......||.
T Consensus 4 ~~~~~i~LiG~~GaGKttvg~~LA~~L~~~f--iD~D~~ie~~~g~si~eif~~~Ge~~FR~~E~~~l~~~~~~~~~VIs 81 (542)
T PRK14021 4 TRRPQAVIIGMMGAGKTRVGKEVAQMMRLPF--ADADVEIEREIGMSIPSYFEEYGEPAFREVEADVVADMLEDFDGIFS 81 (542)
T ss_pred CCCccEEEECCCCCCHHHHHHHHHHHhCCCE--EEchHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEE
Confidence 3456799999999999999999999999666 776665322111 00 11112333333323445554
Q ss_pred c---CCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhccCCCccCCccEE
Q 007244 85 R---CNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRI 160 (611)
Q Consensus 85 ~---tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~e~P~~~EgFd~V 160 (611)
. ....++.|..+..+ +..+. +|||+.|.+++.+|+..+..+|.. .. .+.+.+.+++++. .|.+.+ +.++
T Consensus 82 ~GGG~v~~~~n~~~L~~~~~~~g~---vv~L~~~~~~l~~Rl~~~~~RPll-~~-~~~~~~~~l~~~R-~~~Y~~-~Ad~ 154 (542)
T PRK14021 82 LGGGAPMTPSTQHALASYIAHGGR---VVYLDADPKEAMERANRGGGRPML-NG-DANKRWKKLFKQR-DPVFRQ-VANV 154 (542)
T ss_pred CCCchhCCHHHHHHHHHHHhcCCE---EEEEECCHHHHHHHHhCCCCCCCC-CC-CcHHHHHHHHHHH-HHHHHh-hCCE
Confidence 3 34566677766555 56664 899999999999999766554432 11 2344555555543 333333 3445
Q ss_pred EEcCChhhHHHHH
Q 007244 161 TLCQNENDVQAAL 173 (611)
Q Consensus 161 ~vv~~~~evd~av 173 (611)
.+..+...+++++
T Consensus 155 ~i~~~~~~~~~~~ 167 (542)
T PRK14021 155 HVHTRGLTPQAAA 167 (542)
T ss_pred EEECCCCCHHHHH
Confidence 4444333444433
No 122
>PTZ00301 uridine kinase; Provisional
Probab=98.62 E-value=6.3e-07 Score=89.80 Aligned_cols=116 Identities=21% Similarity=0.302 Sum_probs=71.4
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHc----CCC-eEEeecchhccCC------------CC-----cHHHHHHHHHHHHH
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSS----ARP-WARICQDTINKGK------------SG-----TKVQCLTSASSALK 76 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~----~~~-~~~Is~D~i~~~~------------~~-----~~~~~~~~~~~~L~ 76 (611)
++.||.+.|+|||||||||++|.+.+ +.. ...++.|.+.... +. .++.+.+.+ ..|+
T Consensus 2 ~~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~~~~~~~~~~~~~~~~d~p~a~D~~~l~~~l-~~L~ 80 (210)
T PTZ00301 2 PCTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYRDQSNIPESERAYTNYDHPKSLEHDLLTTHL-RELK 80 (210)
T ss_pred CCEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCccCcccCCHHHhcCCCCCChhhhCHHHHHHHH-HHHH
Confidence 45799999999999999999887665 222 3467888774221 00 122222333 4444
Q ss_pred CCC-------------------------cEEEecCCCC-HHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccC
Q 007244 77 KGK-------------------------SVFLDRCNLE-REQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEG 130 (611)
Q Consensus 77 ~Gk-------------------------~VIID~tnl~-~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g 130 (611)
.|+ .+|+|+.... ......+ .+. .||+++|.++++.|...|...++
T Consensus 81 ~g~~i~~P~yd~~~~~~~~~~~~i~p~~ViIvEGi~~l~~~~l~~l-----~D~---~ifvd~~~d~~~~Rr~~Rd~~~r 152 (210)
T PTZ00301 81 SGKTVQIPQYDYVHHTRSDTAVTMTPKSVLIVEGILLFTNAELRNE-----MDC---LIFVDTPLDICLIRRAKRDMRER 152 (210)
T ss_pred cCCcccCCCcccccCCcCCceEEeCCCcEEEEechhhhCCHHHHHh-----CCE---EEEEeCChhHHHHHHHhhhHHhc
Confidence 431 2577885442 1222222 222 68999999999999999986543
Q ss_pred CCCCCCHHHHHHHHHh
Q 007244 131 NLQGGKAAAVVNRMLQ 146 (611)
Q Consensus 131 ~~~~~vpeevi~rm~~ 146 (611)
+ ..+++++.+...
T Consensus 153 G---~~~e~v~~~~~~ 165 (210)
T PTZ00301 153 G---RTFESVIEQYEA 165 (210)
T ss_pred C---CCHHHHHHHHHH
Confidence 2 456667665544
No 123
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=98.61 E-value=4.1e-07 Score=87.19 Aligned_cols=98 Identities=19% Similarity=0.186 Sum_probs=62.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCC----------cHH---HHHHHHHHHHHCCCcEEEecC-
Q 007244 21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG----------TKV---QCLTSASSALKKGKSVFLDRC- 86 (611)
Q Consensus 21 ~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~----------~~~---~~~~~~~~~L~~Gk~VIID~t- 86 (611)
..|+|+|+|||||||+++.|++.++.++ ++.|.+.....+ .+. +....+.+.+..+ .+||...
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~--~d~D~~~~~~~g~~~~~~~~~~g~~~~~~~e~~~~~~~~~~-~~vi~~gg 79 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRF--VDTDQWLQSTSNMTVAEIVEREGWAGFRARESAALEAVTAP-STVIATGG 79 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCE--EEccHHHHHHhCCCHHHHHHHHCHHHHHHHHHHHHHHhcCC-CeEEECCC
Confidence 4588899999999999999999998554 777766422111 111 1112233445443 3455432
Q ss_pred --CCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244 87 --NLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (611)
Q Consensus 87 --nl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~ 127 (611)
.+....+..+ +..+. +|||++|.+++.+|+..|..
T Consensus 80 g~vl~~~~~~~l---~~~~~---~v~l~~~~~~~~~Rl~~r~~ 116 (171)
T PRK03731 80 GIILTEENRHFM---RNNGI---VIYLCAPVSVLANRLEANPE 116 (171)
T ss_pred CccCCHHHHHHH---HhCCE---EEEEECCHHHHHHHHccccc
Confidence 2344444433 33443 88999999999999988753
No 124
>PRK08233 hypothetical protein; Provisional
Probab=98.60 E-value=2.5e-07 Score=88.87 Aligned_cols=98 Identities=13% Similarity=0.254 Sum_probs=58.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccC--------CC-----C---cHHHHHHHHHHHHHCC--CcE
Q 007244 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKG--------KS-----G---TKVQCLTSASSALKKG--KSV 81 (611)
Q Consensus 20 p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~--------~~-----~---~~~~~~~~~~~~L~~G--k~V 81 (611)
+.+|++.|+|||||||+|+.|++.++.. ..+..|.++.. +. . ....+...+...+... ..+
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~~~-~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v 81 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLKNS-KALYFDRYDFDNCPEDICKWIDKGANYSEWVLTPLIKDIQELIAKSNVDYI 81 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCCCC-ceEEECCEEcccCchhhhhhhhccCChhhhhhHHHHHHHHHHHcCCCceEE
Confidence 5789999999999999999999988632 12223333210 00 0 1112234444444333 335
Q ss_pred EEecCCCCH--HHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244 82 FLDRCNLER--EQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (611)
Q Consensus 82 IID~tnl~~--~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~ 127 (611)
|+|+ ++.. .....+. + .+|||++|.+++++|..+|..
T Consensus 82 ivd~-~~~~~~~~~~~~~-----d---~~i~l~~~~~~~~~R~~~R~~ 120 (182)
T PRK08233 82 IVDY-PFAYLNSEMRQFI-----D---VTIFIDTPLDIAMARRILRDF 120 (182)
T ss_pred EEee-ehhhccHHHHHHc-----C---EEEEEcCCHHHHHHHHHHHHh
Confidence 6675 3221 1112222 2 389999999999999888864
No 125
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=98.59 E-value=2.9e-07 Score=91.07 Aligned_cols=111 Identities=18% Similarity=0.099 Sum_probs=68.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCC----------------------C---cH-----------
Q 007244 21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKS----------------------G---TK----------- 64 (611)
Q Consensus 21 ~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~----------------------~---~~----------- 64 (611)
.+|.|+|++||||||+++.+.+.++ +.+++.|.+..... + .+
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~g--~~~i~~D~~~~~~~~~~~~~~~~l~~~fg~~i~~~~g~~idr~~L~~~vf~d~ 79 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQKG--IPILDADIYAREALAPGSPILKAILQRYGNKIIDPDGSELNRKALGEIIFNDP 79 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhC--CeEeeCcHHHHHHHhcCchHHHHHHHHhCHHhcCCCCCeeCHHHHHHHHhCCH
Confidence 4799999999999999999998877 55688777631100 1 00
Q ss_pred ---H--------HHHHHHHHHHHC---CCcEEEecCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccC
Q 007244 65 ---V--------QCLTSASSALKK---GKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEG 130 (611)
Q Consensus 65 ---~--------~~~~~~~~~L~~---Gk~VIID~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g 130 (611)
. .+...+.+.+.. ...+|+|..-+.......+ .+. +|++++|.+++.+|+.+|..
T Consensus 80 ~~~~~l~~i~hP~i~~~~~~~~~~~~~~~~vv~e~pll~E~~~~~~-----~D~---ii~V~a~~e~r~~Rl~~R~g--- 148 (195)
T PRK14730 80 EERRWLENLIHPYVRERFEEELAQLKSNPIVVLVIPLLFEAKLTDL-----CSE---IWVVDCSPEQQLQRLIKRDG--- 148 (195)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEeHHhcCcchHhC-----CCE---EEEEECCHHHHHHHHHHcCC---
Confidence 0 011222222322 2356677643333221111 222 88899999999999999964
Q ss_pred CCCCCCHHHHHHHHHhhc
Q 007244 131 NLQGGKAAAVVNRMLQKK 148 (611)
Q Consensus 131 ~~~~~vpeevi~rm~~~~ 148 (611)
...+++..|+..++
T Consensus 149 ----~s~e~~~~ri~~Q~ 162 (195)
T PRK14730 149 ----LTEEEAEARINAQW 162 (195)
T ss_pred ----CCHHHHHHHHHhCC
Confidence 34567777776654
No 126
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=98.59 E-value=2.5e-07 Score=90.49 Aligned_cols=126 Identities=19% Similarity=0.197 Sum_probs=75.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhcc-------------------------CCC----------CcHH-
Q 007244 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK-------------------------GKS----------GTKV- 65 (611)
Q Consensus 22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~-------------------------~~~----------~~~~- 65 (611)
+|.|+|.+||||||+++.+.+..+ +.+++.|.+.. |.. ....
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~~--~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~i~~~~g~idr~~L~~~vf~~~~~ 78 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKYH--FPVIDADKIAHQVVEKGSPAYEKIVDHFGAQILNEDGELDRKALGERVFNDPEE 78 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcC--CeEEeCCHHHHHHHhcCChHHHHHHHHHCHHHhCCCCCCCHHHHHHHHhCCHHH
Confidence 489999999999999999988765 55688777621 100 0000
Q ss_pred ----------HHHHHHHHHHH----CCCcEEEecCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCC
Q 007244 66 ----------QCLTSASSALK----KGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGN 131 (611)
Q Consensus 66 ----------~~~~~~~~~L~----~Gk~VIID~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~ 131 (611)
.+...+.+.+. .|..+|++...+.......+ .+ .++++++|.+++.+|+.+|..
T Consensus 79 ~~~le~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~-----~D---~vv~V~~~~~~~~~Rl~~R~~---- 146 (188)
T TIGR00152 79 LKWLNNLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSL-----CD---RVIVVDVSPQLQLERLMQRDN---- 146 (188)
T ss_pred HHHHHHhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHh-----CC---EEEEEECCHHHHHHHHHHcCC----
Confidence 01122222222 34467777733322211122 22 278999999999999999975
Q ss_pred CCCCCHHHHHHHHHhhccCCCccCCccEEEEcC
Q 007244 132 LQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQ 164 (611)
Q Consensus 132 ~~~~vpeevi~rm~~~~e~P~~~EgFd~V~vv~ 164 (611)
...+++..|+..+..........|.++.++
T Consensus 147 ---~s~~~~~~r~~~q~~~~~~~~~ad~vI~N~ 176 (188)
T TIGR00152 147 ---LTEEEVQKRLASQMDIEERLARADDVIDNS 176 (188)
T ss_pred ---CCHHHHHHHHHhcCCHHHHHHhCCEEEECC
Confidence 345677777777642222233456666554
No 127
>PHA02595 tk.4 hypothetical protein; Provisional
Probab=98.59 E-value=3.2e-07 Score=87.66 Aligned_cols=115 Identities=16% Similarity=0.070 Sum_probs=82.6
Q ss_pred EEEEEEcccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHh--cCCCCCCCEEEecCCCCCCCC
Q 007244 344 KFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAER--AKSLYPGNSVIVPLPSTSPLC 421 (611)
Q Consensus 344 ~v~i~~GDIt~~~~~~~~~~daIVN~aN~~L~~~ggGVa~aI~~aAG~~l~~e~~~~--~~~~~~G~~v~T~l~~~~~~~ 421 (611)
.+.+++|||++... ...++|||++|..+. +|+|||.+|.++.+ ++.++.++. .+..+.|++.+.+..
T Consensus 2 ~i~~v~GDl~~~~~---~~~~~i~h~~N~~g~-mG~GIA~~~k~~~P-~~~~~y~~~~~~~~~~lG~~~~~~~~------ 70 (154)
T PHA02595 2 IVDYIKGDIVALFL---QGKGNIAHGCNCFHT-MGSGIAGQLAKAFP-QILEADKLTTEGDVEKLGTFSVWEKY------ 70 (154)
T ss_pred eEEEECCccccccc---CCCceEEEeeCCCCc-CChHHHHHHHHHcC-hHHHHHHHHhcCCccccceEEEEEee------
Confidence 47889999987731 125699999999999 99999999999995 555555544 244678999774311
Q ss_pred CCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH------HHhhccccCCC
Q 007244 422 GREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF------LSIVRSQEKLS 478 (611)
Q Consensus 422 ~~l~~k~ViH~vgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a------~siafp~~~~~ 478 (611)
...+-++|+|..+- |++..+ -.-+.|++|++++.+.+ .|||+|.||.+
T Consensus 71 ~~~~~~~I~nl~tq-~~~~~~--------~~y~ai~~~l~~l~~~~~~~~~~~sIa~P~IG~G 124 (154)
T PHA02595 71 VGGHKAYCFNLYTQ-FDPGPN--------LEYSALMNCFEELNEVFEGTLFKPTIYIPRIGAG 124 (154)
T ss_pred ccCCCEEEEEEecc-CCCCCC--------CcHHHHHHHHHHHHHHHHhcCCCcEEeeCCCCcc
Confidence 22334799999775 655432 12456888888877765 58999999955
No 128
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=98.58 E-value=7.6e-07 Score=89.18 Aligned_cols=117 Identities=22% Similarity=0.291 Sum_probs=77.3
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHcCC-CeEEeecchhccCCCC-----------------cHHHHHHHHHHHHHCC-
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSSAR-PWARICQDTINKGKSG-----------------TKVQCLTSASSALKKG- 78 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~-~~~~Is~D~i~~~~~~-----------------~~~~~~~~~~~~L~~G- 78 (611)
.++.+|.+.|+|||||||+|+.|...++. ....|++|.+..+... .++-+.+. ...|.+|
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~-L~~L~~g~ 84 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEH-LKDLKQGK 84 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeeccccccchhhcCHhhcCCcCccChhhhcHHHHHHH-HHHHHcCC
Confidence 56789999999999999999999999983 3457899988532110 11112222 2233333
Q ss_pred ------------------------CcEEEecCCCCHH-HHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCC
Q 007244 79 ------------------------KSVFLDRCNLERE-QRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQ 133 (611)
Q Consensus 79 ------------------------k~VIID~tnl~~~-~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~ 133 (611)
..|||++...... ....+.++ -||+++|.++++.|...|...+++
T Consensus 85 ~v~~P~yd~~~~~r~~~~i~~~p~~VVIvEGi~~l~d~~lr~~~d~--------kIfvdtd~D~RliRri~RD~~~rg-- 154 (218)
T COG0572 85 PVDLPVYDYKTHTREPETIKVEPNDVVIVEGILLLYDERLRDLMDL--------KIFVDTDADVRLIRRIKRDVQERG-- 154 (218)
T ss_pred cccccccchhcccccCCccccCCCcEEEEecccccccHHHHhhcCE--------EEEEeCCccHHHHHHHHHHHHHhC--
Confidence 2367777554333 22333333 789999999999999999875443
Q ss_pred CCCHHHHHHHHHh
Q 007244 134 GGKAAAVVNRMLQ 146 (611)
Q Consensus 134 ~~vpeevi~rm~~ 146 (611)
..++.++..+..
T Consensus 155 -~~~e~vi~qy~~ 166 (218)
T COG0572 155 -RDLESVIEQYVK 166 (218)
T ss_pred -CCHHHHHHHHHH
Confidence 567777776653
No 129
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=98.57 E-value=1.3e-06 Score=84.63 Aligned_cols=150 Identities=17% Similarity=0.181 Sum_probs=80.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeec-------chhc---cCC----CCcHHH-H----------HHHHHH
Q 007244 22 LVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQ-------DTIN---KGK----SGTKVQ-C----------LTSASS 73 (611)
Q Consensus 22 LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~-------D~i~---~~~----~~~~~~-~----------~~~~~~ 73 (611)
+|+|.|++||||||+++.|++.+ +..+..+.. +.++ ... ...... + ...+..
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 81 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEARGYEVVLTREPGGTPIGEAIRELLLDPEDEKMDPRAELLLFAADRAQHVEEVIKP 81 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCCchHHHHHHHHhccCccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999877 322222211 1111 111 111111 0 122344
Q ss_pred HHHCCCcEEEecCCCCH------------HHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHH
Q 007244 74 ALKKGKSVFLDRCNLER------------EQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAV 140 (611)
Q Consensus 74 ~L~~Gk~VIID~tnl~~------------~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeev 140 (611)
.+..|..||+|...+.. .....+..+ .....+-.+|+|++|.+++.+|+.+|...... .....+.
T Consensus 82 ~~~~~~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~--~~~~~~~ 159 (200)
T cd01672 82 ALARGKIVLSDRFVDSSLAYQGAGRGLGEALIEALNDLATGGLKPDLTILLDIDPEVGLARIEARGRDDRD--EQEGLEF 159 (200)
T ss_pred HHhCCCEEEECCCcchHHHhCccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcCCcchh--hhhhHHH
Confidence 56788899999644332 122222223 33223446899999999999999999763210 0122344
Q ss_pred HHHHHhhccCCCccCCccEEEEcCChhhHHHHHH
Q 007244 141 VNRMLQKKELPKLSEGFSRITLCQNENDVQAALD 174 (611)
Q Consensus 141 i~rm~~~~e~P~~~EgFd~V~vv~~~~evd~av~ 174 (611)
+.++...+.......+. .+++++....++++..
T Consensus 160 ~~~~~~~y~~~~~~~~~-~~~~id~~~~~e~i~~ 192 (200)
T cd01672 160 HERVREGYLELAAQEPE-RIIVIDASQPLEEVLA 192 (200)
T ss_pred HHHHHHHHHHHHHhCCC-eEEEEeCCCCHHHHHH
Confidence 44444444322222222 3455555555555544
No 130
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=98.57 E-value=2.2e-07 Score=90.29 Aligned_cols=125 Identities=22% Similarity=0.205 Sum_probs=74.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCC--------------CC----------cH-------------
Q 007244 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGK--------------SG----------TK------------- 64 (611)
Q Consensus 22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~--------------~~----------~~------------- 64 (611)
+|.|+|.|||||||+++.+.+ ++ +.+++.|.+.... ++ .+
T Consensus 1 ii~itG~~gsGKst~~~~l~~-~g--~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~ 77 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE-LG--IPVIDADKIAHEVYEPGGPALQAIVEAFGPDILLEDGELDRKKLGEIVFADPEK 77 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH-CC--CCEEecCHHHHhhhhcccHHHHHHHHHcCcceeCCCCcCCHHHHHHHHhCCHHH
Confidence 489999999999999999987 77 5568877762110 00 00
Q ss_pred ---------HHHHHHHHHHHHC---CCcEEEecCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCC
Q 007244 65 ---------VQCLTSASSALKK---GKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNL 132 (611)
Q Consensus 65 ---------~~~~~~~~~~L~~---Gk~VIID~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~ 132 (611)
..+...+.+.+.. ...+|+|..-+.......+. + .++++++|.++..+|+..|..
T Consensus 78 ~~~l~~i~hp~i~~~~~~~~~~~~~~~~vive~plL~e~~~~~~~-----D---~vv~V~a~~~~ri~Rl~~Rd~----- 144 (179)
T cd02022 78 RKKLEAITHPLIRKEIEEQLAEARKEKVVVLDIPLLFETGLEKLV-----D---RVIVVDAPPEIQIERLMKRDG----- 144 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCCEEEEEehHhhcCCcHHhC-----C---eEEEEECCHHHHHHHHHHcCC-----
Confidence 0011222222322 24577777333322222222 2 288999999999999999975
Q ss_pred CCCCHHHHHHHHHhhccCCCccCCccEEEEcC
Q 007244 133 QGGKAAAVVNRMLQKKELPKLSEGFSRITLCQ 164 (611)
Q Consensus 133 ~~~vpeevi~rm~~~~e~P~~~EgFd~V~vv~ 164 (611)
...+++..|+..++..-......|.|+.+.
T Consensus 145 --~s~~~~~~r~~~Q~~~~~~~~~aD~vI~N~ 174 (179)
T cd02022 145 --LSEEEAEARIASQMPLEEKRARADFVIDNS 174 (179)
T ss_pred --CCHHHHHHHHHhcCCHHHHHHhCCEEEECc
Confidence 355777788877653222234445555543
No 131
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=98.56 E-value=5.4e-07 Score=95.34 Aligned_cols=152 Identities=14% Similarity=0.141 Sum_probs=82.4
Q ss_pred ccCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCc----------HH---HH-HHHHHHHHHCCCc
Q 007244 15 EKKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGT----------KV---QC-LTSASSALKKGKS 80 (611)
Q Consensus 15 ~~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~----------~~---~~-~~~~~~~L~~Gk~ 80 (611)
...+++..|+|+|+|||||||+++.+++.++.++ ++.|.......+. .. .. ...+.+.+.....
T Consensus 128 ~~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~--id~D~~i~~~~G~~i~ei~~~~G~~~fr~~e~~~l~~ll~~~~~ 205 (309)
T PRK08154 128 RRAARRRRIALIGLRGAGKSTLGRMLAARLGVPF--VELNREIEREAGLSVSEIFALYGQEGYRRLERRALERLIAEHEE 205 (309)
T ss_pred hhccCCCEEEEECCCCCCHHHHHHHHHHHcCCCE--EeHHHHHHHHhCCCHHHHHHHHCHHHHHHHHHHHHHHHHhhCCC
Confidence 3556778999999999999999999999999666 5555443211110 00 11 1233444444444
Q ss_pred EEEecCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhccCCCccCCccEE
Q 007244 81 VFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRI 160 (611)
Q Consensus 81 VIID~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~e~P~~~EgFd~V 160 (611)
+||............+..+... ..+|||++|.+++.+|+.+|.............+.++.+.+... |.+ +.++ +
T Consensus 206 ~VI~~Ggg~v~~~~~~~~l~~~---~~~V~L~a~~e~~~~Rl~~r~~~rp~~~~~~~~e~i~~~~~~R~-~~y-~~ad-~ 279 (309)
T PRK08154 206 MVLATGGGIVSEPATFDLLLSH---CYTVWLKASPEEHMARVRAQGDLRPMADNREAMEDLRRILASRE-PLY-ARAD-A 279 (309)
T ss_pred EEEECCCchhCCHHHHHHHHhC---CEEEEEECCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHHHH-HHH-HhCC-E
Confidence 5555433211111111123122 24889999999999999988642111111233345555555443 222 2233 4
Q ss_pred EEcCChhhHHHHHH
Q 007244 161 TLCQNENDVQAALD 174 (611)
Q Consensus 161 ~vv~~~~evd~av~ 174 (611)
++..+...++++++
T Consensus 280 ~I~t~~~s~ee~~~ 293 (309)
T PRK08154 280 VVDTSGLTVAQSLA 293 (309)
T ss_pred EEECCCCCHHHHHH
Confidence 44444434454444
No 132
>PRK00698 tmk thymidylate kinase; Validated
Probab=98.55 E-value=1e-06 Score=86.39 Aligned_cols=153 Identities=17% Similarity=0.134 Sum_probs=81.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCC--CeEEeec------------chhc--cCCCCcHHH-----------HHHHHH
Q 007244 20 QILVIMVGAPGSGKSTFCEHVMRSSAR--PWARICQ------------DTIN--KGKSGTKVQ-----------CLTSAS 72 (611)
Q Consensus 20 p~LIvLvG~PGSGKST~A~~L~~~~~~--~~~~Is~------------D~i~--~~~~~~~~~-----------~~~~~~ 72 (611)
+.+|++.|++||||||+++.|.+.+.. ..+++.. +.+. ......+.. ....+.
T Consensus 3 ~~~I~ieG~~gsGKsT~~~~L~~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~i~ 82 (205)
T PRK00698 3 GMFITIEGIDGAGKSTQIELLKELLEQQGRDVVFTREPGGTPLGEKLRELLLDPNEEMDDKTELLLFYAARAQHLEEVIK 82 (205)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCceeEeeCCCCChHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 579999999999999999999987531 1112211 0111 111111111 113344
Q ss_pred HHHHCCCcEEEecCCCCHHHH------------HHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHH
Q 007244 73 SALKKGKSVFLDRCNLEREQR------------TDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAA 139 (611)
Q Consensus 73 ~~L~~Gk~VIID~tnl~~~~R------------~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpee 139 (611)
..+..|..||+|...+..-.. ..+... .....+-.+|+|++|.+++.+|+.+|..... ....+.+
T Consensus 83 ~~l~~g~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~pd~~i~l~~~~~~~~~Rl~~R~~~~~--~~~~~~~ 160 (205)
T PRK00698 83 PALARGKWVISDRFIDSSLAYQGGGRGLDIDLLLALNDFALGGFRPDLTLYLDVPPEVGLARIRARGELDR--IEQEGLD 160 (205)
T ss_pred HHHHCCCEEEECCchhHHHHHCCCCCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcCCcch--hhhhhHH
Confidence 567789999999643332111 111112 1112233689999999999999999974210 0011234
Q ss_pred HHHHHHhhccCCCccCCccEEEEcCChhhHHHHHHH
Q 007244 140 VVNRMLQKKELPKLSEGFSRITLCQNENDVQAALDT 175 (611)
Q Consensus 140 vi~rm~~~~e~P~~~EgFd~V~vv~~~~evd~av~~ 175 (611)
...++...++.......+ .+++++....++++..+
T Consensus 161 ~~~~~~~~y~~~~~~~~~-~~~~Id~~~~~e~v~~~ 195 (205)
T PRK00698 161 FFERVREGYLELAEKEPE-RIVVIDASQSLEEVHED 195 (205)
T ss_pred HHHHHHHHHHHHHHhCCC-eEEEEeCCCCHHHHHHH
Confidence 455555444333222222 34445544555555443
No 133
>PRK12338 hypothetical protein; Provisional
Probab=98.55 E-value=7.4e-07 Score=94.29 Aligned_cols=106 Identities=18% Similarity=0.183 Sum_probs=72.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccC-------CC------C---cH------------------
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKG-------KS------G---TK------------------ 64 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~-------~~------~---~~------------------ 64 (611)
.|.+|++.|+|||||||+|+.+++.++..+ .++.|.++.- +. . .|
T Consensus 3 ~p~ii~i~G~sGsGKST~a~~la~~l~~~~-~~~tD~~r~~~~~~~~~~~~P~l~~ssy~a~~~l~~~~~~~~~~~~i~~ 81 (319)
T PRK12338 3 KPYVILIGSASGIGKSTIASELARTLNIKH-LIETDFIREVVRGIIGKEYAPALHKSSYNAYTALRDKENFKNNEELICA 81 (319)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHCCCeE-EccChHHHHHHcCCCCcccCchhhcccHHHHhhcCCcccccchHHHHHH
Confidence 478999999999999999999999998433 2355555310 00 0 00
Q ss_pred ---HHH---H----HHHHHHHHCCCcEEEecCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244 65 ---VQC---L----TSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (611)
Q Consensus 65 ---~~~---~----~~~~~~L~~Gk~VIID~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~ 127 (611)
.++ . ..+.+++..|.++||++..+.+....... ......+.++++-.+.++.++|...|..
T Consensus 82 gf~~q~~~V~~~i~~vi~r~~~~g~svIiEGvhl~P~~i~~~~--~~~~~~v~~~vl~~dee~h~~Rf~~R~~ 152 (319)
T PRK12338 82 GFEEHASFVIPAIEKVIERAVTDSDDIVIEGVHLVPGLIDIEQ--FEENASIHFFILSADEEVHKERFVKRAM 152 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeccccHHHHhhhh--hcccCceEEEEEECCHHHHHHHHHHhhh
Confidence 011 1 34556678899999999998876655321 1122346677777899999999999874
No 134
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.55 E-value=2.3e-07 Score=88.22 Aligned_cols=126 Identities=14% Similarity=0.153 Sum_probs=91.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccC---CCCc------HHHHHHHHHHHHHCCCcEEEecCCCC
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKG---KSGT------KVQCLTSASSALKKGKSVFLDRCNLE 89 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~---~~~~------~~~~~~~~~~~L~~Gk~VIID~tnl~ 89 (611)
||++.++.|+.||||||+.....-.+...+.+|+.|.+..+ +.-. .......+...++.|..+..+.|.-.
T Consensus 1 m~~l~IvaG~NGsGKstv~~~~~~~~~~~~~~VN~D~iA~~i~p~~p~~~~i~A~r~ai~~i~~~I~~~~~F~~ETtLS~ 80 (187)
T COG4185 1 MKRLDIVAGPNGSGKSTVYASTLAPLLPGIVFVNADEIAAQISPDNPTSAAIQAARVAIDRIARLIDLGRPFIAETTLSG 80 (187)
T ss_pred CceEEEEecCCCCCceeeeeccchhhcCCeEEECHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHcCCCcceEEeecc
Confidence 68899999999999999988876666556778999998522 1111 11234666778889999999887666
Q ss_pred HHHHHHHHHhCCCCCeEEEEEEeC-CHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhh
Q 007244 90 REQRTDFVKLGGPEVDVHAVVLDL-PAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQK 147 (611)
Q Consensus 90 ~~~R~~~~~l~~~~~~v~vV~Ld~-p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~ 147 (611)
+..++....-+..|+.+...|+-. +.+...+|.+.|-...|+ ++|++.+++-+.+
T Consensus 81 ~s~~~~ik~Ak~~Gf~I~L~y~~i~~~elavERVk~RVa~GGH---~IpED~Ir~RY~r 136 (187)
T COG4185 81 PSILELIKTAKAAGFYIVLNYIVIDSVELAVERVKLRVAKGGH---DIPEDKIRRRYRR 136 (187)
T ss_pred chHHHHHHHHHhCCeEEEEEEEEeCcHHHHHHHHHHHHhcCCC---CCcHHHHHHHHHH
Confidence 555554433377888776666655 457999999999776665 7899888776654
No 135
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=98.54 E-value=2.6e-06 Score=81.25 Aligned_cols=141 Identities=16% Similarity=0.180 Sum_probs=91.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcCC-C-e----EEeecchh------------------ccC-CCCcHHH---HH--
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSSAR-P-W----ARICQDTI------------------NKG-KSGTKVQ---CL-- 68 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~-~-~----~~Is~D~i------------------~~~-~~~~~~~---~~-- 68 (611)
+.++|+++||+|+||.|+.......+.. + + .+|+++.- ..+ ....|+. ++
T Consensus 4 ~G~lI~vvGPSGAGKDtl~~~ar~~l~~~~r~~fvrRvITRpa~ag~EdH~avs~~eF~~~a~~g~FAlsWqAhGL~Ygi 83 (192)
T COG3709 4 MGRLIAVVGPSGAGKDTLLDAARARLAGRPRLHFVRRVITRPADAGGEDHDALSEAEFNTRAGQGAFALSWQAHGLSYGI 83 (192)
T ss_pred CceEEEEECCCCCChHHHHHHHHHHhccCCceEEEEEEecccCCCCcccccccCHHHHHHHhhcCceeEEehhcCccccC
Confidence 6889999999999999999887776652 1 1 12332111 011 1113321 11
Q ss_pred -HHHHHHHHCCCcEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHh
Q 007244 69 -TSASSALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQ 146 (611)
Q Consensus 69 -~~~~~~L~~Gk~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~ 146 (611)
..+-..|..|..||+.+ -|.-+-.+ +.+. .+.+|.+..+.+++.+|+.+|++ +..+++..|+.+
T Consensus 84 p~eId~wl~~G~vvl~Ng------SRa~Lp~arrry~-~Llvv~ita~p~VLaqRL~~RGR-------Es~eeI~aRL~R 149 (192)
T COG3709 84 PAEIDLWLAAGDVVLVNG------SRAVLPQARRRYP-QLLVVCITASPEVLAQRLAERGR-------ESREEILARLAR 149 (192)
T ss_pred chhHHHHHhCCCEEEEec------cHhhhHHHHHhhh-cceeEEEecCHHHHHHHHHHhcc-------CCHHHHHHHHHh
Confidence 67788999999999987 23333333 3333 45688889999999999999998 678899888887
Q ss_pred hccCCCccCCccEEEEcCChhhHHHHHHHh
Q 007244 147 KKELPKLSEGFSRITLCQNENDVQAALDTY 176 (611)
Q Consensus 147 ~~e~P~~~EgFd~V~vv~~~~evd~av~~~ 176 (611)
.-. ....+++ |+.+++..+++.+.+.+
T Consensus 150 ~a~--~~~~~~d-v~~idNsG~l~~ag~~l 176 (192)
T COG3709 150 AAR--YTAGPGD-VTTIDNSGELEDAGERL 176 (192)
T ss_pred hcc--cccCCCC-eEEEcCCCcHHHHHHHH
Confidence 542 2223444 55555666666665543
No 136
>PRK13973 thymidylate kinase; Provisional
Probab=98.51 E-value=2.7e-06 Score=85.08 Aligned_cols=108 Identities=20% Similarity=0.241 Sum_probs=67.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEee-------cchhcc-------CCCCcHH-----------HHHHHH
Q 007244 20 QILVIMVGAPGSGKSTFCEHVMRSS---ARPWARIC-------QDTINK-------GKSGTKV-----------QCLTSA 71 (611)
Q Consensus 20 p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is-------~D~i~~-------~~~~~~~-----------~~~~~~ 71 (611)
+.+|++-|++||||||+++.|.+.+ +..+..+. .+.+++ ....... .....+
T Consensus 3 g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~ll~~a~r~~~~~~~i 82 (213)
T PRK13973 3 GRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVTREPGGSPGAEAIRHVLLSGAAELYGPRMEALLFAAARDDHVEEVI 82 (213)
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCchHHHHHHHHcCCCccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 5799999999999999999999887 43332221 122221 1111111 112456
Q ss_pred HHHHHCCCcEEEecCCCCH------------HHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244 72 SSALKKGKSVFLDRCNLER------------EQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (611)
Q Consensus 72 ~~~L~~Gk~VIID~tnl~~------------~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~ 127 (611)
..+|..|..||.|...++. .....+... .....+=.+|+|++|.+++.+|+.+|..
T Consensus 83 ~~~l~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PD~vi~Ldv~~e~~~~Rl~~R~~ 151 (213)
T PRK13973 83 RPALARGKIVLCDRFIDSTRAYQGVTGNVDPALLAALERVAINGVMPDLTLILDIPAEVGLERAAKRRG 151 (213)
T ss_pred HHHHHCCCEEEEcchhhhHHHHcccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhccC
Confidence 7788999999999955332 122222222 1112234689999999999999999964
No 137
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=98.50 E-value=5.3e-07 Score=89.36 Aligned_cols=125 Identities=20% Similarity=0.168 Sum_probs=74.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccC--------------CC--------Cc--H-------------
Q 007244 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKG--------------KS--------GT--K------------- 64 (611)
Q Consensus 22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~--------------~~--------~~--~------------- 64 (611)
+|.++|++||||||+++.+. ..+ +.+++.|.+... .+ +. +
T Consensus 1 ~i~itG~~gsGKst~~~~l~-~~g--~~~i~~D~i~~~~~~~~~~~~~~i~~~fG~~i~~~~g~idr~~L~~~vF~~~~~ 77 (196)
T PRK14732 1 LIGITGMIGGGKSTALKILE-ELG--AFGISADRLAKRYTEPDSPILSELVSLLGPSILDENGKPNRKKISEIVFNDEEK 77 (196)
T ss_pred CEEEECCCCccHHHHHHHHH-HCC--CEEEecchHHHHHHhcCcHHHHHHHHHhChhhcCCCCccCHHHHHHHHhCCHHH
Confidence 58899999999999999775 456 566887766210 00 00 0
Q ss_pred ---------HHHHHHHHHHH---HCCCcEEEecCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCC
Q 007244 65 ---------VQCLTSASSAL---KKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNL 132 (611)
Q Consensus 65 ---------~~~~~~~~~~L---~~Gk~VIID~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~ 132 (611)
..+...+.+.+ ..+..+|+|..-+.......+.+. +|++++|.++..+|+.+|..
T Consensus 78 ~~~L~~i~hP~v~~~~~~~~~~~~~~~~vi~e~pLL~E~~~~~~~D~--------vi~V~a~~e~r~~RL~~R~g----- 144 (196)
T PRK14732 78 LKALNELIHPLVRKDFQKILQTTAEGKLVIWEVPLLFETDAYTLCDA--------TVTVDSDPEESILRTISRDG----- 144 (196)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHhcCCcEEEEeeeeeEcCchhhCCE--------EEEEECCHHHHHHHHHHcCC-----
Confidence 00112222222 234567778744444333333222 88999999999999999964
Q ss_pred CCCCHHHHHHHHHhhccCCCccCCccEEEEcC
Q 007244 133 QGGKAAAVVNRMLQKKELPKLSEGFSRITLCQ 164 (611)
Q Consensus 133 ~~~vpeevi~rm~~~~e~P~~~EgFd~V~vv~ 164 (611)
...+++..|+..+.......+..|.|+.++
T Consensus 145 --~s~e~a~~ri~~Q~~~~~k~~~aD~vI~N~ 174 (196)
T PRK14732 145 --MKKEDVLARIASQLPITEKLKRADYIVRND 174 (196)
T ss_pred --CCHHHHHHHHHHcCCHHHHHHhCCEEEECC
Confidence 345777777777542222234445555544
No 138
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.50 E-value=1.7e-06 Score=85.90 Aligned_cols=40 Identities=30% Similarity=0.401 Sum_probs=32.3
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHHcCC-CeEEeecchh
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSAR-PWARICQDTI 56 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~~-~~~~Is~D~i 56 (611)
++++.+|.|+|++||||||+++.|...++. ....++.|.+
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~ 43 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNY 43 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEeccccc
Confidence 467789999999999999999999987653 3456777665
No 139
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=98.50 E-value=1e-06 Score=87.85 Aligned_cols=129 Identities=22% Similarity=0.238 Sum_probs=75.7
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhcc---------------------------CC-CCcHH----
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK---------------------------GK-SGTKV---- 65 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~---------------------------~~-~~~~~---- 65 (611)
..+.+|.|+|.+||||||+++.+.. ++ +.+++.|.+.. +. ...+.
T Consensus 3 ~~~~~igitG~igsGKSt~~~~l~~-~g--~~v~d~D~i~~~~~~~~~~~~~~~~~~fg~~i~~~~~~~~~~idr~~l~~ 79 (208)
T PRK14731 3 SLPFLVGVTGGIGSGKSTVCRFLAE-MG--CELFEADRVAKELQVTDPEVIEGIKKLFGKDVYSKDASGKLLLDRKRIAQ 79 (208)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH-CC--CeEEeccHHHHHHcCCcHHHHHHHHHHhCHHHhCCCCCCCcccCHHHHHH
Confidence 3467899999999999999999875 56 55577664410 10 01100
Q ss_pred ----------------------HHHHHHHHHHHCCC-cEEEecCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHH
Q 007244 66 ----------------------QCLTSASSALKKGK-SVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRS 122 (611)
Q Consensus 66 ----------------------~~~~~~~~~L~~Gk-~VIID~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl 122 (611)
.+...+......+. .+|+|..-+.......+ .+ .+|++++|.+++.+|+
T Consensus 80 ~vf~~~~~~~~l~~i~hp~i~~~~~~~i~~~~~~~~~vvv~e~pLL~e~~~~~~-----~d---~ii~V~a~~e~~~~Rl 151 (208)
T PRK14731 80 VVFSDPEKLGALNRLIHPKVFAAFQRAVDRAARRGKRILVKEAAILFESGGDAG-----LD---FIVVVAADTELRLERA 151 (208)
T ss_pred HHhCCHHHHHHHHHHHCHHHHHHHHHHHHHHHhcCCCEEEEEeeeeeecCchhc-----CC---eEEEEECCHHHHHHHH
Confidence 00112222223443 46666643332211111 12 3788999999999999
Q ss_pred HhcccccCCCCCCCHHHHHHHHHhhccCCCccCCccEEEEcC
Q 007244 123 VKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQ 164 (611)
Q Consensus 123 ~~R~~~~g~~~~~vpeevi~rm~~~~e~P~~~EgFd~V~vv~ 164 (611)
.+|.. ...+++..|+..++......+.+|.++.++
T Consensus 152 ~~R~~-------~s~e~~~~Ri~~q~~~~~~~~~ad~vI~N~ 186 (208)
T PRK14731 152 VQRGM-------GSREEIRRRIAAQWPQEKLIERADYVIYNN 186 (208)
T ss_pred HHcCC-------CCHHHHHHHHHHcCChHHHHHhCCEEEECC
Confidence 99965 355777778776654333334456666554
No 140
>PRK07667 uridine kinase; Provisional
Probab=98.47 E-value=1.3e-06 Score=86.20 Aligned_cols=103 Identities=18% Similarity=0.210 Sum_probs=65.6
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEeecchhccCC-------CCc--------HH--HHHHHHHHHHH
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINKGK-------SGT--------KV--QCLTSASSALK 76 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~---~~~~~Is~D~i~~~~-------~~~--------~~--~~~~~~~~~L~ 76 (611)
.+.+.+|.|.|+|||||||+|+.|.+.++ .+...++.|.+.... ... +. .+...+...|+
T Consensus 14 ~~~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~~~v~~~L~ 93 (193)
T PRK07667 14 KENRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIVERNKRYHTGFEEWYEYYYLQWDIEWLRQKFFRKLQ 93 (193)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccchhhhHHhcCCCchhhhhhhhhhHHHHHHHHHHhhc
Confidence 35568999999999999999999988754 356678888763210 000 11 11122323333
Q ss_pred CC-------------------------CcEEEecCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244 77 KG-------------------------KSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (611)
Q Consensus 77 ~G-------------------------k~VIID~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~ 127 (611)
.+ ..+|+|+..+....-..+.++ +|++++|.++.++|+.+|..
T Consensus 94 ~~~~i~~P~~d~~~~~~~~~~~~~~~~~vvIvEG~~l~~~~~~~~~d~--------~v~V~~~~~~~~~R~~~r~~ 161 (193)
T PRK07667 94 NETKLTLPFYHDETDTCEMKKVQIPIVGVIVIEGVFLQRKEWRDFFHY--------MVYLDCPRETRFLRESEETQ 161 (193)
T ss_pred CCCeEEEeeeccccccccccceecCCCCEEEEEehhhhhhhHHhhceE--------EEEEECCHHHHHHHHhcccH
Confidence 32 346778865543322222222 88999999999999998864
No 141
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=98.47 E-value=2.6e-06 Score=89.29 Aligned_cols=100 Identities=21% Similarity=0.253 Sum_probs=63.3
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHHHHHHHHHH-----CCCcEEEecCCCC--H
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALK-----KGKSVFLDRCNLE--R 90 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L~-----~Gk~VIID~tnl~--~ 90 (611)
.+..+|+|+|++||||||+++.+. ..+ +..++. + +. .++....+.+. ..-.+++|..+.. .
T Consensus 4 ~~~~~i~i~G~~GsGKtt~~~~l~-~~g--~~~~d~--~------~~-~L~~~l~~~~~~~~~~~~~av~iD~r~~~~~~ 71 (288)
T PRK05416 4 APMRLVIVTGLSGAGKSVALRALE-DLG--YYCVDN--L------PP-SLLPKLVELLAQSGGIRKVAVVIDVRSRPFFD 71 (288)
T ss_pred CCceEEEEECCCCCcHHHHHHHHH-HcC--CeEECC--c------CH-HHHHHHHHHHHhcCCCCCeEEEEccCchhhHH
Confidence 445699999999999999999995 445 433432 1 11 11222222222 2236889997543 2
Q ss_pred HHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHh-ccccc
Q 007244 91 EQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVK-RIEHE 129 (611)
Q Consensus 91 ~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~-R~~~~ 129 (611)
..+..+..++..+..+.+|||+++.+++.+|+.. |..|+
T Consensus 72 ~~~~~~~~L~~~g~~~~iI~L~a~~e~L~~Rl~~~rr~RP 111 (288)
T PRK05416 72 DLPEALDELRERGIDVRVLFLDASDEVLIRRYSETRRRHP 111 (288)
T ss_pred HHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHhhcccCCC
Confidence 3333444444457778899999999999999975 33454
No 142
>KOG4622 consensus Predicted nucleotide kinase [General function prediction only]
Probab=98.46 E-value=1.9e-07 Score=90.97 Aligned_cols=132 Identities=20% Similarity=0.344 Sum_probs=95.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCC----CeEEeecchhccC-----------CCCcHHHHHHHHHHHHH---------
Q 007244 21 ILVIMVGAPGSGKSTFCEHVMRSSAR----PWARICQDTINKG-----------KSGTKVQCLTSASSALK--------- 76 (611)
Q Consensus 21 ~LIvLvG~PGSGKST~A~~L~~~~~~----~~~~Is~D~i~~~-----------~~~~~~~~~~~~~~~L~--------- 76 (611)
.|+.++|.|++|||||++.+...... ...+++-|++.-. ..+..+-.++.+..+..
T Consensus 2 ~LlaliGiPAaGKSs~c~~ilga~aaLrvrhi~hlcfDDFlmdaTpSaD~a~keqRgr~~~~iEk~ISaiqedtdwppqv 81 (291)
T KOG4622|consen 2 ALLALIGIPAAGKSSFCRKILGAHAALRVRHIEHLCFDDFLMDATPSADKAAKEQRGRFECHIEKCISAIQEDTDWPPQV 81 (291)
T ss_pred ceeeeecCcccchhHHHHHHHHHHHHHHHHHHHhhhHHHHhhhcCcchhhhHHHHhchHHHHHHHHHHHHhcccCCCchh
Confidence 37899999999999999998654331 1345566666411 11111111122222222
Q ss_pred -----C-----C-CcEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHH
Q 007244 77 -----K-----G-KSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRM 144 (611)
Q Consensus 77 -----~-----G-k~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm 144 (611)
. | ..+++|..++.+..|-.+.++ +.+|..+-+|||....++|++|+..|..-+ ..+.+++++|
T Consensus 82 rrisssgdynsgrhiilcdD~FY~kSMR~k~~ki~kd~GciFG~Iflas~ide~LqaNS~Rsda~-----k~~~dtiRki 156 (291)
T KOG4622|consen 82 RRISSSGDYNSGRHIILCDDIFYLKSMRHKFQKIAKDHGCIFGIIFLASGIDEALQANSHRSDAE-----KQKNDTIRKI 156 (291)
T ss_pred eeccccCCcCCCceEEEechHHHHHHhhhHHHHHHHHcCCeeeeeehhhhHHHHHHhccccccch-----hCccHHHHHH
Confidence 1 2 236788888888999999999 999999999999999999999999998743 5788999999
Q ss_pred HhhccCCCccCCc
Q 007244 145 LQKKELPKLSEGF 157 (611)
Q Consensus 145 ~~~~e~P~~~EgF 157 (611)
.+++|-|...|.+
T Consensus 157 ~EklE~PD~~ea~ 169 (291)
T KOG4622|consen 157 FEKLEDPDEIEAL 169 (291)
T ss_pred HHhccCccHHHHH
Confidence 9999999987666
No 143
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=98.42 E-value=1.1e-06 Score=86.57 Aligned_cols=35 Identities=29% Similarity=0.332 Sum_probs=29.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhc
Q 007244 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN 57 (611)
Q Consensus 22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~ 57 (611)
+|.+.|+|||||||+|+.|.+.++ ...+|+.|.+.
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~-~~~~i~~Ddf~ 35 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILP-NCCVIHQDDFF 35 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC-CCeEEcccccc
Confidence 588999999999999999999874 25568888773
No 144
>KOG2633 consensus Hismacro and SEC14 domain-containing proteins [Chromatin structure and dynamics; Transcription]
Probab=98.41 E-value=1.1e-07 Score=93.33 Aligned_cols=85 Identities=13% Similarity=0.103 Sum_probs=69.7
Q ss_pred ccccccccccccceeecccccccccccCC--CCcchhhhcccCCCCCCCccccccCccCCCCCChHHHHHHHHHHHHHHH
Q 007244 231 ITEEKNSCLEGQEITSLLSDAAGEEVKGT--ENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFV 308 (611)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~~~~~~~~~~~SiAfPaIStGi~gfP~~~aa~Iiv~tv~~f~ 308 (611)
|.+..+.+.+.-|.+.|.|.. ....+. +..--.+||.+|...++++||||+||+|+||||.+.||++++++++.|+
T Consensus 88 t~~~~Lpak~vIHtvgP~~~~--d~~~~~~~L~~~~rs~L~la~~~~ls~iAf~~I~sg~~gyP~e~aa~~~l~ti~~~f 165 (200)
T KOG2633|consen 88 TGGYGLPAKRVIHTVGPRWKE--DKLQECYFLHSCYRSCLDLAIEKLLSSIAFPKISSGRVGYPWEDAAKIELETIRVFF 165 (200)
T ss_pred cCCCCCceeEEEEecCchhhc--cchHHHHHHHHHHHHHHHHHHHhccceeeeeeeeccccCccHHHHHHHHHHHHHHHH
Confidence 445678899999999999986 332222 4445667889999999999999999999999999999999999999999
Q ss_pred HhcCCeEEE
Q 007244 309 NKLGNARLV 317 (611)
Q Consensus 309 ~~~~~i~iV 317 (611)
+++++..++
T Consensus 166 ~~~~d~~l~ 174 (200)
T KOG2633|consen 166 VKNKDSSLK 174 (200)
T ss_pred hhCCCceEE
Confidence 998763333
No 145
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=98.41 E-value=3.9e-06 Score=81.91 Aligned_cols=108 Identities=19% Similarity=0.239 Sum_probs=63.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCC---CeEEeec-------chhc----cCC--CCc---HH---------HHHHHH
Q 007244 20 QILVIMVGAPGSGKSTFCEHVMRSSAR---PWARICQ-------DTIN----KGK--SGT---KV---------QCLTSA 71 (611)
Q Consensus 20 p~LIvLvG~PGSGKST~A~~L~~~~~~---~~~~Is~-------D~i~----~~~--~~~---~~---------~~~~~~ 71 (611)
+.+|++.|++||||||+++.|++.++. ....+.. +.++ .+. ... .. .....+
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~~i 82 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLLQENGYDVLFTREPGGTPIGEKIRELLLNENDEPLTDKAEALLFAADRHEHLEDKI 82 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCChHHHHHHHHHcCCCccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999988752 1221210 1111 010 011 00 111345
Q ss_pred HHHHHCCCcEEEecCCCCHH---------HHHHHHHh-CCCC--CeEEEEEEeCCHHHHHHHHHhccc
Q 007244 72 SSALKKGKSVFLDRCNLERE---------QRTDFVKL-GGPE--VDVHAVVLDLPAKLCISRSVKRIE 127 (611)
Q Consensus 72 ~~~L~~Gk~VIID~tnl~~~---------~R~~~~~l-~~~~--~~v~vV~Ld~p~e~~~~Rl~~R~~ 127 (611)
...+..|..||+|...+... ....+..+ .... .+-.+|+|++|.+++.+|+..|..
T Consensus 83 ~~~l~~~~~VI~DR~~~s~~ay~~~~~~~~~~~~~~l~~~~~~~~~d~~i~l~~~~~~~~~R~~~r~~ 150 (195)
T TIGR00041 83 KPALAEGKLVISDRYVFSSIAYQGGARGIDEDLVLELNEDALGDMPDLTIYLDIDPEVALERLRKRGE 150 (195)
T ss_pred HHHHhCCCEEEECCcccHHHHHccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHhcCC
Confidence 56777888999997433221 11111122 1111 123589999999999999999865
No 146
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=98.41 E-value=1.8e-06 Score=86.18 Aligned_cols=131 Identities=15% Similarity=0.086 Sum_probs=78.0
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCC--------------------C--c------------
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKS--------------------G--T------------ 63 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~--------------------~--~------------ 63 (611)
..|..|.|+|.+||||||+++.+.+.++. .+++.|.+..... + .
T Consensus 4 ~~~~~IglTG~iGsGKStv~~~l~~~lg~--~vidaD~i~~~l~~~~~~~~~i~~~fG~~i~~~g~idR~~L~~~vF~d~ 81 (204)
T PRK14733 4 INTYPIGITGGIASGKSTATRILKEKLNL--NVVCADTISREITKKPSVIKKIAEKFGDEIVMNKQINRAMLRAIITESK 81 (204)
T ss_pred CceEEEEEECCCCCCHHHHHHHHHHHcCC--eEEeccHHHHHHHCchHHHHHHHHHhCHHhccCCCcCHHHHHHHHhCCH
Confidence 34678999999999999999999888884 4577666521100 0 0
Q ss_pred ----------HHHHHHHHHHHHHCC--CcEEEecCCCCHHHH--HHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhccccc
Q 007244 64 ----------KVQCLTSASSALKKG--KSVFLDRCNLEREQR--TDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHE 129 (611)
Q Consensus 64 ----------~~~~~~~~~~~L~~G--k~VIID~tnl~~~~R--~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~ 129 (611)
+..+...+.+.+... ..+|+|..-+.+... ..+. + .++++.+|.++..+|+.+|..
T Consensus 82 ~~~~~Le~i~HP~V~~~~~~~~~~~~~~~vv~eipLL~E~~~~~~~~~-----D---~vi~V~a~~e~ri~Rl~~Rd~-- 151 (204)
T PRK14733 82 EAKKWLEDYLHPVINKEIKKQVKESDTVMTIVDIPLLGPYNFRHYDYL-----K---KVIVIKADLETRIRRLMERDG-- 151 (204)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhcCCCeEEEEechhhhccCchhhhC-----C---EEEEEECCHHHHHHHHHHcCC--
Confidence 001112333333332 357788743332211 1121 2 278889999999999999965
Q ss_pred CCCCCCCHHHHHHHHHhhccCCCccCCccEEEEcCC
Q 007244 130 GNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQN 165 (611)
Q Consensus 130 g~~~~~vpeevi~rm~~~~e~P~~~EgFd~V~vv~~ 165 (611)
-..+++..|+..+.......+.-|.|+.++.
T Consensus 152 -----~s~~~a~~ri~~Q~~~eek~~~aD~VI~N~g 182 (204)
T PRK14733 152 -----KNRQQAVAFINLQISDKEREKIADFVIDNTE 182 (204)
T ss_pred -----CCHHHHHHHHHhCCCHHHHHHhCCEEEECcC
Confidence 2456777777776533333343345555543
No 147
>PLN02199 shikimate kinase
Probab=98.40 E-value=9.2e-06 Score=85.07 Aligned_cols=96 Identities=19% Similarity=0.178 Sum_probs=62.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCC-CC-cH------------HHHHHHHHHHHHCCCcEEEec
Q 007244 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGK-SG-TK------------VQCLTSASSALKKGKSVFLDR 85 (611)
Q Consensus 20 p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~-~~-~~------------~~~~~~~~~~L~~Gk~VIID~ 85 (611)
..-|+|+|++||||||+++.|++.++.++ |+.|.+.+.. .+ .. .+....+...+.....+||..
T Consensus 102 ~~~I~LIG~~GSGKSTVgr~LA~~Lg~~f--IDtD~lIe~~~~G~sI~eIf~~~GE~~FR~~E~e~L~~L~~~~~~VISt 179 (303)
T PLN02199 102 GRSMYLVGMMGSGKTTVGKLMSKVLGYTF--FDCDTLIEQAMNGTSVAEIFVHHGENFFRGKETDALKKLSSRYQVVVST 179 (303)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCE--EehHHHHHHHhcCCCHHHHHHHhCHHHHHHHHHHHHHHHHhcCCEEEEC
Confidence 45689999999999999999999998554 8888763321 11 11 112233344444445666654
Q ss_pred C---CCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHh
Q 007244 86 C---NLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVK 124 (611)
Q Consensus 86 t---nl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~ 124 (611)
- ...+..+..+ + .+. +|||+.|.+++.+|+..
T Consensus 180 GGG~V~~~~n~~~L---~-~G~---vV~Ldas~E~l~~RL~~ 214 (303)
T PLN02199 180 GGGAVIRPINWKYM---H-KGI---SIWLDVPLEALAHRIAA 214 (303)
T ss_pred CCcccCCHHHHHHH---h-CCe---EEEEECCHHHHHHHHhh
Confidence 2 2333444422 3 344 89999999999999985
No 148
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=98.38 E-value=2.1e-06 Score=88.03 Aligned_cols=127 Identities=20% Similarity=0.154 Sum_probs=78.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhcc-------------------------CCC----------CcH-
Q 007244 21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK-------------------------GKS----------GTK- 64 (611)
Q Consensus 21 ~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~-------------------------~~~----------~~~- 64 (611)
.+|.|+|..||||||+++.+.+.+| +.+|+.|.+.+ |.. ...
T Consensus 2 ~iIGlTGgIgSGKStVs~~L~~~~G--~~viDaD~iar~l~~~~~~~~~~i~~~Fg~~i~~~dg~idR~~L~~~VF~d~~ 79 (244)
T PTZ00451 2 ILIGLTGGIACGKSTVSRILREEHH--IEVIDADLVVRELQAPNMACTRKIAARWPLCVHPETGELNRAELGKIIFSDAQ 79 (244)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC--CeEEehHHHHHHHHcCChHHHHHHHHHhchhhcCCCCcCCHHHHHHHHhCCHH
Confidence 3799999999999999999988777 56688777621 100 000
Q ss_pred --H--------HHHHHHHHHHH-------------CC-CcEEEecCCCCHHH-HHHHHHhCCCCCeEEEEEEeCCHHHHH
Q 007244 65 --V--------QCLTSASSALK-------------KG-KSVFLDRCNLEREQ-RTDFVKLGGPEVDVHAVVLDLPAKLCI 119 (611)
Q Consensus 65 --~--------~~~~~~~~~L~-------------~G-k~VIID~tnl~~~~-R~~~~~l~~~~~~v~vV~Ld~p~e~~~ 119 (611)
. .+...+.+.+. .+ ..+|+|..-+.+.. ...+. + .+|++.+|.++..
T Consensus 80 ~~~~Le~i~HP~V~~~i~~~i~~~~~~~~~~~~~~~~~~~vv~evPLL~E~~~~~~~~-----D---~iv~V~a~~e~ri 151 (244)
T PTZ00451 80 ARRALGRIMNPPIFRAILKRIAAAWWEDLWRSGAGSSPLIVVLDAPTLFETKTFTYFV-----S---ASVVVSCSEERQI 151 (244)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHhhhhhhhhhhhccCCCEEEEEechhhccCchhhcC-----C---eEEEEECCHHHHH
Confidence 0 01112222221 22 36888884443322 11121 2 2888899999999
Q ss_pred HHHHhcccccCCCCCCCHHHHHHHHHhhccCCCccCCccEEEEcC
Q 007244 120 SRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQ 164 (611)
Q Consensus 120 ~Rl~~R~~~~g~~~~~vpeevi~rm~~~~e~P~~~EgFd~V~vv~ 164 (611)
+|+.+|.. ...+++..|+..+...-...+..|.|+.++
T Consensus 152 ~RL~~R~g-------~s~eea~~Ri~~Q~~~~ek~~~aD~VI~N~ 189 (244)
T PTZ00451 152 ERLRKRNG-------FSKEEALQRIGSQMPLEEKRRLADYIIEND 189 (244)
T ss_pred HHHHHcCC-------CCHHHHHHHHHhCCCHHHHHHhCCEEEECC
Confidence 99999954 355777777777553333355567777776
No 149
>PLN02422 dephospho-CoA kinase
Probab=98.37 E-value=2.7e-06 Score=86.45 Aligned_cols=125 Identities=19% Similarity=0.132 Sum_probs=74.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhcc-------------------------CCCC----------c---
Q 007244 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK-------------------------GKSG----------T--- 63 (611)
Q Consensus 22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~-------------------------~~~~----------~--- 63 (611)
+|.|+|.+||||||+++.+. ++| +.+++.|.+.. +..- .
T Consensus 3 ~igltG~igsGKstv~~~l~-~~g--~~~idaD~~~~~l~~~g~~~~~~l~~~FG~~il~~dG~idR~~L~~~VF~d~~~ 79 (232)
T PLN02422 3 VVGLTGGIASGKSTVSNLFK-SSG--IPVVDADKVARDVLKKGSGGWKRVVAAFGEDILLPDGEVDREKLGQIVFSDPSK 79 (232)
T ss_pred EEEEECCCCCCHHHHHHHHH-HCC--CeEEehhHHHHHHHHhhHHHHHHHHHHhCHHhcCCCCcCCHHHHHHHHhCCHHH
Confidence 79999999999999999997 567 55688776621 1000 0
Q ss_pred --------HHHHHHHHHHHH----HCC-CcEEEecCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccC
Q 007244 64 --------KVQCLTSASSAL----KKG-KSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEG 130 (611)
Q Consensus 64 --------~~~~~~~~~~~L----~~G-k~VIID~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g 130 (611)
+..+...+.+.+ ..+ ..+|+|..-+.......+ .+. ++++++|.++..+|+.+|..
T Consensus 80 ~~~Le~IlHP~V~~~~~~~~~~~~~~~~~~vv~eipLL~E~~~~~~-----~D~---vI~V~a~~e~ri~RL~~R~g--- 148 (232)
T PLN02422 80 RQLLNRLLAPYISSGIFWEILKLWLKGCKVIVLDIPLLFETKMDKW-----TKP---VVVVWVDPETQLERLMARDG--- 148 (232)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEehhhhhcchhhh-----CCE---EEEEECCHHHHHHHHHHcCC---
Confidence 001112221111 123 467888844433322222 222 88999999999999999964
Q ss_pred CCCCCCHHHHHHHHHhhccCCCccCCccEEEEcC
Q 007244 131 NLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQ 164 (611)
Q Consensus 131 ~~~~~vpeevi~rm~~~~e~P~~~EgFd~V~vv~ 164 (611)
...+++..|+..+...-.....-|.|+.++
T Consensus 149 ----~s~eea~~Ri~~Q~~~eek~~~AD~VI~N~ 178 (232)
T PLN02422 149 ----LSEEQARNRINAQMPLDWKRSKADIVIDNS 178 (232)
T ss_pred ----CCHHHHHHHHHHcCChhHHHhhCCEEEECC
Confidence 345777777766653222233334555554
No 150
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=98.36 E-value=5.6e-06 Score=86.96 Aligned_cols=110 Identities=20% Similarity=0.194 Sum_probs=76.7
Q ss_pred cCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhcc--------------------CCC-------Cc-----
Q 007244 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK--------------------GKS-------GT----- 63 (611)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~--------------------~~~-------~~----- 63 (611)
....|.+|++.|+|||||||+|.+|+..++.. .+|+.|.+++ .|. ..
T Consensus 88 ~~~~p~iIlI~G~sgsGKStlA~~La~~l~~~-~vi~~D~~re~~R~~~~~e~~p~L~~S~Y~a~~~l~~~~~~~~~~l~ 166 (301)
T PRK04220 88 KSKEPIIILIGGASGVGTSTIAFELASRLGIR-SVIGTDSIREVMRKIISKELLPTLHESSYTAWKSLRRPPPPEPPVIY 166 (301)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhCCC-EEEechHHHHHHHHhcchhhccchhhhhhhhhhcccCCCCCchhhhh
Confidence 34578999999999999999999999999855 3577877751 010 00
Q ss_pred --HHH-------HHHHHHHHHHCCCcEEEecCCCCHHHHHHHHHhCCCCCeEEEEEEe-CCHHHHHHHHHhccccc
Q 007244 64 --KVQ-------CLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLD-LPAKLCISRSVKRIEHE 129 (611)
Q Consensus 64 --~~~-------~~~~~~~~L~~Gk~VIID~tnl~~~~R~~~~~l~~~~~~v~vV~Ld-~p~e~~~~Rl~~R~~~~ 129 (611)
..+ +...+.+++.+|.++||++.++.+.....+.. .+. .++.+++. .+.+..++|...|....
T Consensus 167 g~~~~~~~v~~gi~~~I~~~~~~g~s~IiEGvhl~P~~i~~~~~--~~~-~~i~~~l~i~~ee~h~~RF~~R~~~~ 239 (301)
T PRK04220 167 GFERHVEPVSVGVEAVIERALKEGISVIIEGVHIVPGFIKEKYL--ENP-NVFMFVLTLSDEEAHKARFYARARVS 239 (301)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCcEEEecCCCCHHHHHHhhh--cCC-CEEEEEEEECCHHHHHHHHHHHHhhh
Confidence 001 12566788899999999999999876655321 122 23344444 56688999998888753
No 151
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=98.35 E-value=2.2e-06 Score=80.77 Aligned_cols=105 Identities=20% Similarity=0.256 Sum_probs=71.9
Q ss_pred cCCCcEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEeecchhccCCCC-----c--HHHHH---HHH-HHHHHCCCcE
Q 007244 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINKGKSG-----T--KVQCL---TSA-SSALKKGKSV 81 (611)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~---~~~~~Is~D~i~~~~~~-----~--~~~~~---~~~-~~~L~~Gk~V 81 (611)
.+++..+|+|.|++||||||+|-.|.+.+. ...++++.|.++.|... . +.+.+ ..+ .-+...|-..
T Consensus 27 ~~qkGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRhGLN~DL~F~a~dR~ENIRRigeVaKLFADag~ic 106 (207)
T KOG0635|consen 27 LKQKGCVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNVRHGLNKDLGFKAEDRNENIRRIGEVAKLFADAGVIC 106 (207)
T ss_pred hcCCCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCcccccccccccCcchhhhhhhHHHHHHHHHHHhccceee
Confidence 366778999999999999999999877653 34567888988754221 1 11112 222 3333444445
Q ss_pred EEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHH
Q 007244 82 FLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRS 122 (611)
Q Consensus 82 IID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl 122 (611)
|..-...++.+|...+.+ .+. .++-||+++|.++|..|-
T Consensus 107 iaSlISPYR~dRdacRel~~~~--~FiEvfmdvpl~vcE~RD 146 (207)
T KOG0635|consen 107 IASLISPYRKDRDACRELLPEG--DFIEVFMDVPLEVCEARD 146 (207)
T ss_pred eehhcCchhccHHHHHHhccCC--CeEEEEecCcHHHhhccC
Confidence 555556677888888888 544 457789999999999875
No 152
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=98.34 E-value=4.2e-06 Score=82.33 Aligned_cols=112 Identities=21% Similarity=0.291 Sum_probs=67.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCC---C----eEEeecchhcc----------C--C-------CCcHHHHHHHHHHHH
Q 007244 22 LVIMVGAPGSGKSTFCEHVMRSSAR---P----WARICQDTINK----------G--K-------SGTKVQCLTSASSAL 75 (611)
Q Consensus 22 LIvLvG~PGSGKST~A~~L~~~~~~---~----~~~Is~D~i~~----------~--~-------~~~~~~~~~~~~~~L 75 (611)
||.++|+|||||||||++|...++. . ...++.|.+.. + . ....+.+ ......|
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~a~d~~~l-~~~l~~L 79 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFYDDYHLRDRKGRGENRYNFDHPDAFDFDLL-KEDLKAL 79 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGBHHHHHHHHHHHCTTTSSTTSGGGBSHHHH-HHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeecccccccchhhHhhccccccCCCCccccCHHHH-HHHHHHH
Confidence 6899999999999999999998862 2 33455555421 0 0 0112223 3333456
Q ss_pred HCCC-------------------------cEEEecCCC-CHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhccccc
Q 007244 76 KKGK-------------------------SVFLDRCNL-EREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHE 129 (611)
Q Consensus 76 ~~Gk-------------------------~VIID~tnl-~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~ 129 (611)
++|. .+|+++... ..+....+.++ .||++++.++++.|...|....
T Consensus 80 ~~g~~i~~p~yd~~~~~~~~~~~~~~~~~ivIvEG~~~l~~~~l~~l~D~--------~ifld~~~~~~l~Rri~RD~~~ 151 (194)
T PF00485_consen 80 KNGGSIEIPIYDFSTGDRDPWIIIISPSDIVIVEGIYALYDEELRDLFDL--------KIFLDADEDLRLERRIQRDVAE 151 (194)
T ss_dssp HTTSCEEEEEEETTTTEEEEEEEEEES-SEEEEEETTTTSSHCHGGG-SE--------EEEEEE-HHHHHHHHHHHHHHH
T ss_pred hCCCcccccccccccccceeeeeecCCCCEEEEcccceeeeeeeccccee--------EEEecccHHHHHHHHhhhhccc
Confidence 5543 268888553 22222222222 7799999999999999997654
Q ss_pred CCCCCCCHHHHHHHHH
Q 007244 130 GNLQGGKAAAVVNRML 145 (611)
Q Consensus 130 g~~~~~vpeevi~rm~ 145 (611)
++ ..+++++.++.
T Consensus 152 rG---~~~~~~~~~~~ 164 (194)
T PF00485_consen 152 RG---RSPEEVIAQYE 164 (194)
T ss_dssp S----S-HHHHHHHHH
T ss_pred cC---CcceeEEEEee
Confidence 32 46677777655
No 153
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=98.33 E-value=3.7e-06 Score=82.18 Aligned_cols=104 Identities=18% Similarity=0.233 Sum_probs=61.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecch----hc--------cCC--CCcHHHHH------HHHHHH---HHCC
Q 007244 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDT----IN--------KGK--SGTKVQCL------TSASSA---LKKG 78 (611)
Q Consensus 22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~----i~--------~~~--~~~~~~~~------~~~~~~---L~~G 78 (611)
+|++.|++||||||+++.|.+.++. ..+..+. .. .+. .....+.+ +...+. +..|
T Consensus 1 ~I~ieG~~GsGKSTl~~~L~~~~~~--~~~~Ep~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~r~~~~~~~~~~~~~~ 78 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEHLGY--EVVPEPVEPDVEGNPFLEKFYEDPKRWAFPFQLYFLLSRLKQYKDALEHLSTG 78 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCC--ccccccccccCCCCCCHHHHHhCHHhccHHHHHHHHHHHHHHHHHHHhhcccC
Confidence 4899999999999999999987663 2232221 11 110 00001111 122222 3478
Q ss_pred CcEEEecCCCCHHH---------------H---HHHHHh--CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244 79 KSVFLDRCNLEREQ---------------R---TDFVKL--GGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (611)
Q Consensus 79 k~VIID~tnl~~~~---------------R---~~~~~l--~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~ 127 (611)
..||+|...+.... . ..+... .....+-.+|+|++|.+++.+|+.+|++
T Consensus 79 ~~vI~DR~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~~i~l~~~~~~~~~Ri~~R~r 147 (193)
T cd01673 79 QGVILERSIFSDRVFAEANLKEGGIMKTEYDLYNELFDNLIPELLPPDLVIYLDASPETCLKRIKKRGR 147 (193)
T ss_pred CceEEEcChhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHHHhcCc
Confidence 99999996554311 1 112222 2223344789999999999999999875
No 154
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.31 E-value=7.8e-06 Score=80.35 Aligned_cols=36 Identities=28% Similarity=0.444 Sum_probs=29.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcC-CCeEEeecchhc
Q 007244 22 LVIMVGAPGSGKSTFCEHVMRSSA-RPWARICQDTIN 57 (611)
Q Consensus 22 LIvLvG~PGSGKST~A~~L~~~~~-~~~~~Is~D~i~ 57 (611)
+|.|+|+|||||||+++.|...++ ....+++.|.+.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~ 37 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYY 37 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEecccc
Confidence 588999999999999999988763 235667777764
No 155
>PLN02348 phosphoribulokinase
Probab=98.31 E-value=5.3e-06 Score=89.90 Aligned_cols=121 Identities=15% Similarity=0.213 Sum_probs=75.9
Q ss_pred cCCCcEEEEEEcCCCCcHHHHHHHHHHHcCC------------------CeEEeecchhcc-CC--------------CC
Q 007244 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSAR------------------PWARICQDTINK-GK--------------SG 62 (611)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~------------------~~~~Is~D~i~~-~~--------------~~ 62 (611)
..+.|.+|.|.|+||||||||+++|...++. ...+|+.|++.. +. ..
T Consensus 45 ~~~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh~~dr~~r~~~g~t~ldP~a~ 124 (395)
T PLN02348 45 ADDGTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRAN 124 (395)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEcccccCCChhhHhhcCCccCCcccc
Confidence 3467899999999999999999999988752 346788888741 10 00
Q ss_pred cHHHHHHHHHHHHHCCC------------------------cEEEecCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHH
Q 007244 63 TKVQCLTSASSALKKGK------------------------SVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLC 118 (611)
Q Consensus 63 ~~~~~~~~~~~~L~~Gk------------------------~VIID~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~ 118 (611)
..+ .+......|++|+ .+||++.+..... .+. ...+ ..||+++|.++.
T Consensus 125 dfD-ll~~~L~~Lk~G~~I~~PiYDh~tg~~~~~e~I~p~~VVIVEGlh~L~~e--~lr--~l~D---~~IyVd~~~dvr 196 (395)
T PLN02348 125 NFD-LMYEQVKALKEGKAVEKPIYNHVTGLLDPPELIEPPKILVIEGLHPMYDE--RVR--DLLD---FSIYLDISDDVK 196 (395)
T ss_pred cHH-HHHHHHHHHHCCCcEEeeccccCCCCcCCcEEcCCCcEEEEechhhccCc--ccc--ccCc---EEEEEECCHHHH
Confidence 112 2334444666653 3566763322111 111 1122 388999999999
Q ss_pred HHHHHhcccccCCCCCCCHHHHHHHHHhh
Q 007244 119 ISRSVKRIEHEGNLQGGKAAAVVNRMLQK 147 (611)
Q Consensus 119 ~~Rl~~R~~~~g~~~~~vpeevi~rm~~~ 147 (611)
+.|..+|....++ ..+++++.++.++
T Consensus 197 l~RRI~RD~~eRG---~S~EeV~~~i~ar 222 (395)
T PLN02348 197 FAWKIQRDMAERG---HSLESIKASIEAR 222 (395)
T ss_pred HHHHHHhhHhhcC---CCHHHHHHHHHhc
Confidence 8888888754322 4567777766543
No 156
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=98.29 E-value=1.3e-06 Score=83.36 Aligned_cols=135 Identities=19% Similarity=0.172 Sum_probs=74.8
Q ss_pred CCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCc-------------HHHHHHHHHHHHHCCCcEEEec---CCCCHHH
Q 007244 29 PGSGKSTFCEHVMRSSARPWARICQDTINKGKSGT-------------KVQCLTSASSALKKGKSVFLDR---CNLEREQ 92 (611)
Q Consensus 29 PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~-------------~~~~~~~~~~~L~~Gk~VIID~---tnl~~~~ 92 (611)
|||||||+++.|++.++.+| ++.|.+.....+. ..+....+...+....+.||.. .....+.
T Consensus 1 ~GsGKStvg~~lA~~L~~~f--iD~D~~i~~~~g~si~~i~~~~G~~~fr~~E~~~l~~l~~~~~~VIa~GGG~~~~~~~ 78 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLGRPF--IDLDDEIEERTGMSISEIFAEEGEEAFRELESEALRELLKENNCVIACGGGIVLKEEN 78 (158)
T ss_dssp TTSSHHHHHHHHHHHHTSEE--EEHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEEEE-TTGGGSHHH
T ss_pred CCCcHHHHHHHHHHHhCCCc--cccCHHHHHHhCCcHHHHHHcCChHHHHHHHHHHHHHHhccCcEEEeCCCCCcCcHHH
Confidence 79999999999999999554 8877774222110 1122233344444444666666 5555565
Q ss_pred HHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhccCCCccCCccEEEEcCChhhHHHH
Q 007244 93 RTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQNENDVQAA 172 (611)
Q Consensus 93 R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~e~P~~~EgFd~V~vv~~~~evd~a 172 (611)
+.-+ +..+. +|||+.+.+++.+|+..+..++.. ....+...+.+++.+ ..|. ++.++.+++..+...++++
T Consensus 79 ~~~L---~~~g~---vI~L~~~~~~l~~Rl~~~~~Rp~l-~~~~~~~~~~~~~~~-R~~~-Y~~~a~~~v~~~~~~~~~i 149 (158)
T PF01202_consen 79 RELL---KENGL---VIYLDADPEELAERLRARDNRPLL-KGKMEHEEILELLFE-REPL-YEQAADIVVDTDGSPPEEI 149 (158)
T ss_dssp HHHH---HHHSE---EEEEE--HHHHHHHHHHHCTSGGT-CSHHHHHHHHHHHHH-HHHH-HHHHSSEEEETSSCHHHHH
T ss_pred HHHH---HhCCE---EEEEeCCHHHHHHHHhCCCCCCCC-CCCChHHHHHHHHHH-HHHH-HHhcCeEEEeCCCCCHHHH
Confidence 5555 32333 899999999999999888774321 111221122222221 1233 2334556666554444444
Q ss_pred HH
Q 007244 173 LD 174 (611)
Q Consensus 173 v~ 174 (611)
+.
T Consensus 150 ~~ 151 (158)
T PF01202_consen 150 AE 151 (158)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 157
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=98.29 E-value=4.7e-06 Score=81.32 Aligned_cols=110 Identities=19% Similarity=0.112 Sum_probs=68.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcC---CCeEEeecchhccCC---------CC-----cHHHHHHHHHHHHHCC------
Q 007244 22 LVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINKGK---------SG-----TKVQCLTSASSALKKG------ 78 (611)
Q Consensus 22 LIvLvG~PGSGKST~A~~L~~~~~---~~~~~Is~D~i~~~~---------~~-----~~~~~~~~~~~~L~~G------ 78 (611)
+|.+.|+|||||||||+.|.+.+. .....|+.|.+.... +. ..+.+.+.+. .|.+|
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~~~~~~~~~~g~~d~~~~~d~~~l~~~l~-~l~~~~~~~~p 79 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVPRKTPRDEDGNYDFESILDLDLLNKNLH-DLLNGKEVELP 79 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcccCcccccccCCCCCCCccccHHHHHHHHH-HHHCCCeeecc
Confidence 589999999999999999998763 456788988886411 11 1112222222 23333
Q ss_pred --------------------CcEEEecCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHH-HHHHHHhcccccCCCCCCCH
Q 007244 79 --------------------KSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKL-CISRSVKRIEHEGNLQGGKA 137 (611)
Q Consensus 79 --------------------k~VIID~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~-~~~Rl~~R~~~~g~~~~~vp 137 (611)
..+|||+..........+.+ ..||+++|.++ ++.|-..|....++ ..+
T Consensus 80 ~yd~~~~~~~~~~~~~~~~~~vIIvEG~~~l~~~l~~~~d--------~~I~vd~~~~~~rl~rri~RD~~~rg---~~~ 148 (179)
T cd02028 80 IYDFRTGKRRGYRKLKLPPSGVVILEGIYALNERLRSLLD--------IRVAVSGGVHLNRLLRRVVRDIQFRG---YSA 148 (179)
T ss_pred cceeECCccCCCceEEeCCCCEEEEecHHhcCHhHHhhcC--------EEEEEeCCccHHHHHHHHHHhHHhhC---CCH
Confidence 23788885544332222222 27899999998 77777777754432 456
Q ss_pred HHHHHH
Q 007244 138 AAVVNR 143 (611)
Q Consensus 138 eevi~r 143 (611)
++++.+
T Consensus 149 ~~~i~~ 154 (179)
T cd02028 149 ELTILM 154 (179)
T ss_pred HHHhhh
Confidence 666665
No 158
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=98.27 E-value=8.1e-06 Score=81.14 Aligned_cols=33 Identities=24% Similarity=0.401 Sum_probs=28.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh
Q 007244 21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (611)
Q Consensus 21 ~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i 56 (611)
.+|.|+|.+||||||+++.+.. +| +.+++.|.+
T Consensus 2 ~~igitG~igsGKst~~~~l~~-~g--~~vid~D~i 34 (200)
T PRK14734 2 LRIGLTGGIGSGKSTVADLLSS-EG--FLIVDADQV 34 (200)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CC--CeEEeCcHH
Confidence 3799999999999999999986 66 567888865
No 159
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=98.27 E-value=1.2e-05 Score=80.80 Aligned_cols=152 Identities=16% Similarity=0.207 Sum_probs=81.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEee-------c-------c----------hhccC-C----CCcHHH------
Q 007244 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARIC-------Q-------D----------TINKG-K----SGTKVQ------ 66 (611)
Q Consensus 22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is-------~-------D----------~i~~~-~----~~~~~~------ 66 (611)
+|++-|+-||||||+++.|++.++.....-. . + .+..+ . .....+
T Consensus 1 ~I~iEG~~GsGKSTl~~~L~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~q~~~~~~ 80 (219)
T cd02030 1 VITVDGNIASGKGKLAKELAEKLGMKYFPEAGIHYLDSTTGDGKPLDPAFNGNCSLEKFYDDPKSNDGNSYRLQSWMYSS 80 (219)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCeeeccchhccccccccccccccccCCCcCHHHHhcCCcccCCcchHHHHHHHHH
Confidence 5899999999999999999988763211000 0 0 01111 1 111111
Q ss_pred ----HHHHHHHHHHCCCcEEEecCCCCHH---------------HHHHHHHh-----CCCCCeEEEEEEeCCHHHHHHHH
Q 007244 67 ----CLTSASSALKKGKSVFLDRCNLERE---------------QRTDFVKL-----GGPEVDVHAVVLDLPAKLCISRS 122 (611)
Q Consensus 67 ----~~~~~~~~L~~Gk~VIID~tnl~~~---------------~R~~~~~l-----~~~~~~v~vV~Ld~p~e~~~~Rl 122 (611)
..+.+...+..|..||+|...+... ....+..+ .....+=.+|+|++|.+++.+|+
T Consensus 81 R~~~~~~~i~~~l~~g~~VI~DR~~~S~~~f~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~Pd~~i~l~~~~~~~~~Ri 160 (219)
T cd02030 81 RLLQYSDALEHLLSTGQGVVLERSPFSDFVFLEAMYKQGYIRKQCVDHYNEVKGNTIPELLPPHLVIYLDVPVPEVQKRI 160 (219)
T ss_pred HHHHHHHHHHHHhhcCCCEEEecchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHH
Confidence 1122334566788999999643321 11111111 11122336899999999999999
Q ss_pred HhcccccCCCCCCCHHHHHHHHHhh---ccCCCccCCccEEEEcCCh--hhHHHHHHHhc
Q 007244 123 VKRIEHEGNLQGGKAAAVVNRMLQK---KELPKLSEGFSRITLCQNE--NDVQAALDTYS 177 (611)
Q Consensus 123 ~~R~~~~g~~~~~vpeevi~rm~~~---~e~P~~~EgFd~V~vv~~~--~evd~av~~~~ 177 (611)
.+|++.. ....+.+-++++... +..+...+ ...+++++.. ..++.++..+.
T Consensus 161 ~~R~~~~---e~~~~~~yl~~l~~~y~~~~~~~~~~-~~~~i~id~~~~~~~e~i~~~I~ 216 (219)
T cd02030 161 KKRGDPH---EMKVTSAYLQDIENAYKKTFLPEISE-HSEVLQYDWTEAGDTEKVVEDIE 216 (219)
T ss_pred HHcCCch---hhcccHHHHHHHHHHHHHHHHHhhcc-CCCEEEEeCCChhhHHHHHHHHH
Confidence 9987531 113444433333333 22222222 2456666544 66666666543
No 160
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=98.26 E-value=5.7e-06 Score=91.24 Aligned_cols=107 Identities=17% Similarity=0.143 Sum_probs=74.8
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhcc--------C-------------------CCC-----cH-
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK--------G-------------------KSG-----TK- 64 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~--------~-------------------~~~-----~~- 64 (611)
..|.+|+++|+|||||||+|.+++..++..+ +|+.|.++. + ..+ ..
T Consensus 253 k~p~vil~~G~~G~GKSt~a~~LA~~lg~~~-ii~tD~iR~~lr~~i~~e~~P~Lh~Sty~A~~~~~~~~~~~~~~~~~~ 331 (475)
T PRK12337 253 PRPLHVLIGGVSGVGKSVLASALAYRLGITR-IVSTDAVREVLRAMVSKDLLPTLHASTFNAWRALLPPGEGLPAEPTRA 331 (475)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCcE-EeehhHHHHHHHhhcchhhccchhhchhhHHhhccCcccccccccchH
Confidence 4699999999999999999999999998432 467776632 0 000 00
Q ss_pred -------HH-------HHHHHHHHHHCCCcEEEecCCCCHHHHHHHHHhCCCCCeEEEEEEe-CCHHHHHHHHHhcccc
Q 007244 65 -------VQ-------CLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLD-LPAKLCISRSVKRIEH 128 (611)
Q Consensus 65 -------~~-------~~~~~~~~L~~Gk~VIID~tnl~~~~R~~~~~l~~~~~~v~vV~Ld-~p~e~~~~Rl~~R~~~ 128 (611)
.+ +...+.+.+..|.++|||+.++.+..+... ...+..+..|++- .+.++..+|...|...
T Consensus 332 ~vi~Gf~~q~~~V~~gi~~vI~r~l~eG~SvIIEGVHl~P~~i~~~---~~~~~~~i~flv~isdeeeH~~Rf~~Ra~~ 407 (475)
T PRK12337 332 EVLRGFRDQVQQVAVGLGAIQERSAQEGTSLVLEGVHLVPGYLRHP---YQAGALVVPMLVTLPDEALHRRRFELRDRE 407 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEECCCCCHHHHHHH---HhcCCceEEEEEEECCHHHHHHHHHHHhhh
Confidence 11 125678899999999999999999876532 2333333333333 3668888999999764
No 161
>KOG0707 consensus Guanylate kinase [Nucleotide transport and metabolism]
Probab=98.24 E-value=1e-05 Score=81.27 Aligned_cols=136 Identities=15% Similarity=0.176 Sum_probs=89.7
Q ss_pred cCCCc-EEEEEEcCCCCcHHHHHHHHHHHcCCCe-EEeecch------------------------hccCCCCcHHHHH-
Q 007244 16 KKWKQ-ILVIMVGAPGSGKSTFCEHVMRSSARPW-ARICQDT------------------------INKGKSGTKVQCL- 68 (611)
Q Consensus 16 ~~~~p-~LIvLvG~PGSGKST~A~~L~~~~~~~~-~~Is~D~------------------------i~~~~~~~~~~~~- 68 (611)
..+++ .-|+|+||+|+||+|+..++.+.++..+ ..++.+. +.++.+.++..+.
T Consensus 32 ~~p~~~~~ivl~gpsg~gk~tll~~l~ee~~~~~~fsvS~ttr~pr~~E~~g~~y~fs~~~~~~s~i~~~~fiE~a~~~g 111 (231)
T KOG0707|consen 32 TPPGDFKPIVLSGPSGVGKSTLLKRLREELGGMFGFSVSHTTRTPRAGEVHGKHYHFSTTEEFLSMIKNNEFIEFATFSG 111 (231)
T ss_pred cCCCCCceEEEeCCCCcchhHHHHHHHHHcCCcceEEecCCCCCCCcccccCCcceeccHHHHHHHhhhhhhhhhhhhhc
Confidence 34444 7899999999999999999999988422 2333111 0122333332221
Q ss_pred -------HHHHHHHHCCCcEEEecCCCCHHHHHHHHHhCCCCCeEEEEEE-eCCHHHHHHHHHhcccccCCCCCCCHHHH
Q 007244 69 -------TSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVL-DLPAKLCISRSVKRIEHEGNLQGGKAAAV 140 (611)
Q Consensus 69 -------~~~~~~L~~Gk~VIID~tnl~~~~R~~~~~l~~~~~~v~vV~L-d~p~e~~~~Rl~~R~~~~g~~~~~vpeev 140 (611)
..+++....|+..|+|. +.+....++......+++++ .++...+.+|+..|.+ +..+++
T Consensus 112 n~yGtsi~av~~~~~~gk~~ildI------d~qg~~~i~~~~~~~i~i~~~pps~~~~e~rl~~rgt-------e~~~~l 178 (231)
T KOG0707|consen 112 NKYGTSIAAVQRLMLSGKVCILDI------DLQGVQPIRATSLDAIYIFIKPPSIKILEERLRARGT-------ETEESL 178 (231)
T ss_pred ccCCchHHHHHHHHhcCCcceeeh------hhcCceeeecCCCceEEEEecCCcchhHHHHhhccCc-------chHHHH
Confidence 56677778899999988 45544444334444445554 5777999999999966 678899
Q ss_pred HHHHHhhccCCCccCC---ccEEEEcC
Q 007244 141 VNRMLQKKELPKLSEG---FSRITLCQ 164 (611)
Q Consensus 141 i~rm~~~~e~P~~~Eg---Fd~V~vv~ 164 (611)
+.|+....++-...++ |+.+++..
T Consensus 179 ~~r~~sa~~e~~~~~~~g~~d~~~~ns 205 (231)
T KOG0707|consen 179 LKRLKSAEEEFEILENSGSFDLVIVNS 205 (231)
T ss_pred HHHHHhhhhhhccccCCccccceecCC
Confidence 9998854444444343 88888874
No 162
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=98.24 E-value=8.8e-07 Score=79.65 Aligned_cols=97 Identities=22% Similarity=0.206 Sum_probs=54.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcCCCeEEe--ec-------chh--ccCCCCcH---HHHHHHHHHH---HHCCCcEEEec
Q 007244 23 VIMVGAPGSGKSTFCEHVMRSSARPWARI--CQ-------DTI--NKGKSGTK---VQCLTSASSA---LKKGKSVFLDR 85 (611)
Q Consensus 23 IvLvG~PGSGKST~A~~L~~~~~~~~~~I--s~-------D~i--~~~~~~~~---~~~~~~~~~~---L~~Gk~VIID~ 85 (611)
|+|.|+|||||||+|+.|.+.++.....+ .. +.. ........ ......+... ...+..+|+|+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~ 80 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERLGDIIRDIAPEEDIVDSIDDNPDWKENKRLDMEFQDELLDSIIQAIRRMNKGRNIIIDG 80 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCHHHHHHHHHTTSHSSHCCHHCCCCCCCSCHHHHHHHHHHHHHHHHHHTTTSCEEEEE
T ss_pred CEEECCCCCCHHHHHHHHHHHHCcHHHHHHHhcCCcccccccchhhhhhhhhhhhHHHHHHHHHHhhcccccCCcEEEec
Confidence 78999999999999999999862000000 00 000 00111111 1223333333 45678899999
Q ss_pred CCCCHHHHHHHHHhCCCCCeEEE-EEEeCCHHHHHHHHHhcccc
Q 007244 86 CNLEREQRTDFVKLGGPEVDVHA-VVLDLPAKLCISRSVKRIEH 128 (611)
Q Consensus 86 tnl~~~~R~~~~~l~~~~~~v~v-V~Ld~p~e~~~~Rl~~R~~~ 128 (611)
..... ......... |+|++|.+++.+|+..|...
T Consensus 81 ~~~~~---------~~~~~~~~~~i~L~~~~e~~~~R~~~R~~~ 115 (129)
T PF13238_consen 81 ILSNL---------ELERLFDIKFIFLDCSPEELRKRLKKRGRK 115 (129)
T ss_dssp SSEEE---------CETTEEEESSEEEE--HHHHHHHHHCTTTS
T ss_pred ccchh---------cccccceeeEEEEECCHHHHHHHHHhCCCC
Confidence 44221 111111222 89999999999999999874
No 163
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=98.22 E-value=1e-05 Score=94.12 Aligned_cols=126 Identities=20% Similarity=0.254 Sum_probs=80.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCC---CeEEeecchhccC----------CCCcHH---HHH----HHHHHHH-HCC
Q 007244 20 QILVIMVGAPGSGKSTFCEHVMRSSAR---PWARICQDTINKG----------KSGTKV---QCL----TSASSAL-KKG 78 (611)
Q Consensus 20 p~LIvLvG~PGSGKST~A~~L~~~~~~---~~~~Is~D~i~~~----------~~~~~~---~~~----~~~~~~L-~~G 78 (611)
..+++|+|+||+||||+|++|.+.++. ...+++.+.++.. +..... ++. ..+...+ ..|
T Consensus 215 ~~~~~~vglp~~GKStia~~L~~~l~~~~~~~~~~~~~~~rr~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~v~~~G 294 (664)
T PTZ00322 215 SLIVIMVGLPGRGKTYVARQIQRYFQWNGLQSRIFIHQAYRRRLERRGGAVSSPTGAAEVEFRIAKAIAHDMTTFICKTD 294 (664)
T ss_pred ceeEEecccCCCChhHHHHHHHHHHHhcCCCcEEEccchhHhhhccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 468999999999999999999988752 2333444443311 111111 111 2122223 358
Q ss_pred CcEEEecCCCCHHHHHHHHHh-CCCCC----eEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhc
Q 007244 79 KSVFLDRCNLEREQRTDFVKL-GGPEV----DVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKK 148 (611)
Q Consensus 79 k~VIID~tnl~~~~R~~~~~l-~~~~~----~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~ 148 (611)
..+|+|++|.....|..+++. ++.+. .+.+|..-++....++|+..|.... .++.+++...++++.+
T Consensus 295 gvaI~DatN~t~~rR~~~~~~~~~~~~~~~~~vifle~vc~~~~~i~~ni~r~~~~---~~~~~e~~~~~~~~~~ 366 (664)
T PTZ00322 295 GVAVLDGTNTTHARRMALLRAIRETGLIRMTRVVFVEVVNNNSETIRRNVLRAKEM---FPGAPEDFVDRYYEVI 366 (664)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHcCCCccCcEEEEEEeCCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHH
Confidence 899999999999999888877 65553 5666666677777778887775421 1235666666666554
No 164
>PRK07429 phosphoribulokinase; Provisional
Probab=98.18 E-value=2.2e-05 Score=83.82 Aligned_cols=121 Identities=22% Similarity=0.318 Sum_probs=74.8
Q ss_pred cCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCC-eEEeecchhcc---------CC--CCcH---HHHHHHHHHHHHCC--
Q 007244 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARP-WARICQDTINK---------GK--SGTK---VQCLTSASSALKKG-- 78 (611)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~-~~~Is~D~i~~---------~~--~~~~---~~~~~~~~~~L~~G-- 78 (611)
...+|.+|.++|++|||||||++.+...++.. ..+++.|.+.. +. ..+. ...+....+.|..|
T Consensus 4 ~~~~~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~~~~~~~~r~~~g~~~l~p~~~~~d~l~~~l~~L~~g~~ 83 (327)
T PRK07429 4 MPDRPVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDYHSYDRKQRKELGITALDPRANNLDIMYEHLKALKTGQP 83 (327)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEecccccCCHHHHHhcCCcccCccchHHHHHHHHHHHHHCCCc
Confidence 35678999999999999999999999887633 44677777631 11 0011 11222222344443
Q ss_pred ----------------------CcEEEecCC-CCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCC
Q 007244 79 ----------------------KSVFLDRCN-LEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGG 135 (611)
Q Consensus 79 ----------------------k~VIID~tn-l~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~ 135 (611)
..||+|+.. +.......+.++ .||+++|.++.+.|..+|....++ .
T Consensus 84 I~~P~yd~~~g~~~~~~~i~p~~iVIvEG~~~l~~~~lr~~~D~--------~I~Vda~~evr~~Rri~Rd~~rrG---~ 152 (327)
T PRK07429 84 ILKPIYNHETGTFDPPEYIEPNKIVVVEGLHPLYDERVRELYDF--------KVYLDPPEEVKIAWKIKRDMAKRG---H 152 (327)
T ss_pred eecceeecCCCCcCCcEecCCCcEEEEechhhcCcHhHHhhCCE--------EEEEECCHHHHHHHHHHHHHhhcC---C
Confidence 236778854 333322334333 889999999999887777654321 3
Q ss_pred CHHHHHHHHHhh
Q 007244 136 KAAAVVNRMLQK 147 (611)
Q Consensus 136 vpeevi~rm~~~ 147 (611)
..+++..++.++
T Consensus 153 s~eei~~~i~~r 164 (327)
T PRK07429 153 TYEQVLAEIEAR 164 (327)
T ss_pred CHHHHHHHHHHh
Confidence 556666666543
No 165
>PLN02924 thymidylate kinase
Probab=98.18 E-value=2.9e-05 Score=78.47 Aligned_cols=108 Identities=19% Similarity=0.189 Sum_probs=67.4
Q ss_pred cCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCC---eEEeec-c-------hhc----cC-CCCcH----------HHHHH
Q 007244 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARP---WARICQ-D-------TIN----KG-KSGTK----------VQCLT 69 (611)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~---~~~Is~-D-------~i~----~~-~~~~~----------~~~~~ 69 (611)
...++.+|+|.|+.||||||+++.|.+.+... ...+.. + .++ .. ....+ .+...
T Consensus 12 ~~~~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v~~~~ep~~~~~~g~~ir~~l~~~~~~~~~~~~llf~adR~~~~~ 91 (220)
T PLN02924 12 VESRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAAELWRFPDRTTSVGQMISAYLSNKSQLDDRAIHLLFSANRWEKRS 91 (220)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCceeeeCCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHH
Confidence 45667899999999999999999999877522 111110 0 011 11 11111 11124
Q ss_pred HHHHHHHCCCcEEEecCCCCHHHH-------HHHHH-h-CCCCCeEEEEEEeCCHHHHHHHHH
Q 007244 70 SASSALKKGKSVFLDRCNLEREQR-------TDFVK-L-GGPEVDVHAVVLDLPAKLCISRSV 123 (611)
Q Consensus 70 ~~~~~L~~Gk~VIID~tnl~~~~R-------~~~~~-l-~~~~~~v~vV~Ld~p~e~~~~Rl~ 123 (611)
.+..+|..|..||.|...+..-.. ..|+. + .....+=.+|+|++|.+++.+|..
T Consensus 92 ~I~pal~~g~vVI~DRy~~S~~ayq~~~g~~~~~~~~~~~~~~~PDlvi~Ld~~~~~a~~R~~ 154 (220)
T PLN02924 92 LMERKLKSGTTLVVDRYSYSGVAFSAAKGLDLEWCKAPEVGLPAPDLVLYLDISPEEAAERGG 154 (220)
T ss_pred HHHHHHHCCCEEEEccchhHHHHHHHhcCCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhc
Confidence 577888999999999976643211 12332 3 222233468999999999999964
No 166
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=98.12 E-value=4.1e-06 Score=82.06 Aligned_cols=125 Identities=17% Similarity=0.150 Sum_probs=71.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhcc-------------------------CCCC----------cH--
Q 007244 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK-------------------------GKSG----------TK-- 64 (611)
Q Consensus 22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~-------------------------~~~~----------~~-- 64 (611)
+|.|+|..||||||+++.+.+ +| +.+++.|.+.+ |..- ..
T Consensus 2 iIglTG~igsGKStv~~~l~~-~G--~~vidaD~i~~~l~~~~~~~~~~l~~~FG~~il~~~g~idR~~L~~~vF~d~~~ 78 (180)
T PF01121_consen 2 IIGLTGGIGSGKSTVSKILAE-LG--FPVIDADEIAHELYEPGSEGYKALKERFGEEILDEDGEIDRKKLAEIVFSDPEK 78 (180)
T ss_dssp EEEEEESTTSSHHHHHHHHHH-TT---EEEEHHHHHHHCTSCTCHHHHHHHHHHGGGGBETTSSB-HHHHHHHHTTSHHH
T ss_pred EEEEECCCcCCHHHHHHHHHH-CC--CCEECccHHHHHHhhcCHHHHHHHHHHcCccccCCCCCChHHHHHHHHhcCHHH
Confidence 789999999999999998877 77 67788777621 1000 00
Q ss_pred ---------HHHHHHHHHHHHC---CCcEEEecCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCC
Q 007244 65 ---------VQCLTSASSALKK---GKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNL 132 (611)
Q Consensus 65 ---------~~~~~~~~~~L~~---Gk~VIID~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~ 132 (611)
..+...+.+.+.. ...+|+|..-+.......+ .+. +|++.+|.++..+|+.+|..
T Consensus 79 ~~~L~~iihP~I~~~~~~~~~~~~~~~~~v~e~pLL~E~~~~~~-----~D~---vi~V~a~~e~ri~Rl~~R~~----- 145 (180)
T PF01121_consen 79 LKKLENIIHPLIREEIEKFIKRNKSEKVVVVEIPLLFESGLEKL-----CDE---VIVVYAPEEIRIKRLMERDG----- 145 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCHSTSEEEEE-TTTTTTTGGGG-----SSE---EEEEE--HHHHHHHHHHHHT-----
T ss_pred HHHHHHHHhHHHHHHHHHHHHhccCCCEEEEEcchhhhhhHhhh-----hce---EEEEECCHHHHHHHHHhhCC-----
Confidence 0111333333332 2568888866554322222 332 88889999999999999975
Q ss_pred CCCCHHHHHHHHHhhccCCCccCCccEEEEcC
Q 007244 133 QGGKAAAVVNRMLQKKELPKLSEGFSRITLCQ 164 (611)
Q Consensus 133 ~~~vpeevi~rm~~~~e~P~~~EgFd~V~vv~ 164 (611)
-..+++..++..+...-...+.-|.|+.++
T Consensus 146 --~~~~~~~~ri~~Q~~~~~k~~~ad~vI~N~ 175 (180)
T PF01121_consen 146 --LSEEEAEARIASQMPDEEKRKRADFVIDNN 175 (180)
T ss_dssp --STHHHHHHHHHTS--HHHHHHH-SEEEE-S
T ss_pred --CcHHHHHHHHHhCCCHHHHHHhCCEEEECC
Confidence 345666666666542222233334555554
No 167
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=98.10 E-value=1.7e-05 Score=89.06 Aligned_cols=96 Identities=21% Similarity=0.200 Sum_probs=60.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCC-----------c-H-HHHHHHHHHHHHCCCcEEEecC--
Q 007244 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG-----------T-K-VQCLTSASSALKKGKSVFLDRC-- 86 (611)
Q Consensus 22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~-----------~-~-~~~~~~~~~~L~~Gk~VIID~t-- 86 (611)
-|+|+|+|||||||+++.+++.++.+ +++.|.+.....+ + + .+....+.+.+.....+||..-
T Consensus 2 ~I~l~G~~GsGKSTv~~~La~~lg~~--~id~D~~i~~~~g~~i~~i~~~~Ge~~fr~~E~~~l~~l~~~~~~Vis~Ggg 79 (488)
T PRK13951 2 RIFLVGMMGSGKSTIGKRVSEVLDLQ--FIDMDEEIERREGRSVRRIFEEDGEEYFRLKEKELLRELVERDNVVVATGGG 79 (488)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCe--EEECcHHHHHHcCCCHHHHHHHhhhHHHHHHHHHHHHHHhhcCCEEEECCCc
Confidence 38999999999999999999999844 5777766432221 0 0 0111222233333344555431
Q ss_pred -CCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcc
Q 007244 87 -NLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRI 126 (611)
Q Consensus 87 -nl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~ 126 (611)
.+....|..+ +. + .+|||++|.+++.+|+..|.
T Consensus 80 vv~~~~~r~~l---~~-~---~vI~L~as~e~l~~Rl~~~~ 113 (488)
T PRK13951 80 VVIDPENRELL---KK-E---KTLFLYAPPEVLMERVTTEN 113 (488)
T ss_pred cccChHHHHHH---hc-C---eEEEEECCHHHHHHHhccCC
Confidence 2344555544 32 2 27899999999999997763
No 168
>cd03330 Macro_2 Macro domain, Unknown family 2. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins containing a stand-alone macro domain.
Probab=98.07 E-value=1e-06 Score=81.72 Aligned_cols=72 Identities=8% Similarity=0.098 Sum_probs=55.8
Q ss_pred ccccccccccccceeecccccccccccCCCCcchhhhcccCCCCCCCccccccCccCCCCCChHHHHHHHHHHH
Q 007244 231 ITEEKNSCLEGQEITSLLSDAAGEEVKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKV 304 (611)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~SiAfPaIStGi~gfP~~~aa~Iiv~tv 304 (611)
|.+.++.|.+..|.+.+..+. ....+.....-.+|+..+.+++++|||||+|+||++|||.++|+++|.+++
T Consensus 61 t~~~~l~~k~Iih~~~~~~~~--~~~~~~l~~~~~~~l~~a~~~~~~sIA~P~igtG~~g~~~~~~a~i~~~~i 132 (133)
T cd03330 61 TGAGDLPARYVIHAATMEEPG--RSSEESVRKATRAALALADELGIESVAFPAMGTGVGGLPKEDVARLMVEVI 132 (133)
T ss_pred EeCCCCCCCEEEEeCCCCCCC--CCHHHHHHHHHHHHHHHHHHcCCCEEEECcccccCCCCCHHHHHHHHHHHh
Confidence 556677888999988765442 111122333445688889999999999999999999999999999999987
No 169
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.04 E-value=3.5e-05 Score=77.87 Aligned_cols=122 Identities=23% Similarity=0.252 Sum_probs=70.5
Q ss_pred cCCCcEEEEEEcCCCCcHHHHHHHHHHHcCC---CeEE-eecchhcc--------CC------C--CcHHHHHHHHHHHH
Q 007244 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSAR---PWAR-ICQDTINK--------GK------S--GTKVQCLTSASSAL 75 (611)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~---~~~~-Is~D~i~~--------~~------~--~~~~~~~~~~~~~L 75 (611)
..+++.+|.|.|++|||||||++.+...+.. ...+ ++.|.+.. +. . .....+. .+...|
T Consensus 29 ~~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~~~~~~~~~~g~~~~~~~~~~~d~~~~~-~~l~~l 107 (229)
T PRK09270 29 EPQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHLDNAVLDAHGLRPRKGAPETFDVAGLA-ALLRRL 107 (229)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccccCCHHHHHhcccccccCCCCCCCHHHHH-HHHHHH
Confidence 4567899999999999999999999876652 2223 55554421 10 0 0111222 222223
Q ss_pred HCC---------------------------CcEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244 76 KKG---------------------------KSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (611)
Q Consensus 76 ~~G---------------------------k~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~ 127 (611)
..| ..+|+|+..+... ...+..+ ...+ .+|++++|.+++++|+..|..
T Consensus 108 ~~~~~~i~~P~yD~~~~~~~~~~~~~~~~~~ivIvEG~~~l~~-~~~~~~l~~~~D---~vi~v~~~~~~~~~R~~~R~~ 183 (229)
T PRK09270 108 RAGDDEVYWPVFDRSLEDPVADAIVVPPTARLVIVEGNYLLLD-EEPWRRLAGLFD---FTIFLDAPAEVLRERLVARKL 183 (229)
T ss_pred HcCCCceecccCCcccCCCCCCceEecCCCCEEEEcCcceeec-cccHHHHHhhCC---EEEEEECCHHHHHHHHHHHHH
Confidence 222 2367777544221 1122222 2233 389999999999999999953
Q ss_pred ccCCCCCCCHHHHHHHHHh
Q 007244 128 HEGNLQGGKAAAVVNRMLQ 146 (611)
Q Consensus 128 ~~g~~~~~vpeevi~rm~~ 146 (611)
..+ ..++++..++.+
T Consensus 184 ~~g----~s~~~~~~~~~~ 198 (229)
T PRK09270 184 AGG----LSPEAAEAFVLR 198 (229)
T ss_pred hcC----CCHHHHHHHHHh
Confidence 211 345666666654
No 170
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=98.03 E-value=8.1e-05 Score=74.19 Aligned_cols=157 Identities=19% Similarity=0.173 Sum_probs=82.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCe-E-Eeec----chhccCCCC--cHHHHH------HHHHHHHHCCCcEEEec
Q 007244 20 QILVIMVGAPGSGKSTFCEHVMRSSARPW-A-RICQ----DTINKGKSG--TKVQCL------TSASSALKKGKSVFLDR 85 (611)
Q Consensus 20 p~LIvLvG~PGSGKST~A~~L~~~~~~~~-~-~Is~----D~i~~~~~~--~~~~~~------~~~~~~L~~Gk~VIID~ 85 (611)
..+|++.|+-|+||||+|+.|+++++... . .++. |.+.++... ...|.+ +...+.+..+. .|.|.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~~~~~~E~vednp~L~~FY~d~~~yaf~~QiyFL~~Rfk~~k~~~~~~~-~i~dr 82 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLGFKVFYELVEDNPFLDLFYEDPERYAFLLQIYFLLNRFKKIKKALSDKN-NILDR 82 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhCCceeeecccCChHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHHhcccc-cccCc
Confidence 35799999999999999999999998332 1 1111 222211111 111211 33344444443 34442
Q ss_pred ----------------CCCCHHHHHHHHHh---------CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHH
Q 007244 86 ----------------CNLEREQRTDFVKL---------GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAV 140 (611)
Q Consensus 86 ----------------tnl~~~~R~~~~~l---------~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeev 140 (611)
.++.+..-.-|.++ ..++.+=.+|+|+++.+++++|+.+|++.--.....--..-
T Consensus 83 sI~eD~~lf~~~~~~~g~~~~~e~~~Y~~L~~~~~~~l~~~p~~PdllIyLd~~~e~~l~RI~~RgR~~E~~~~~~~~~Y 162 (216)
T COG1428 83 SIFEDYFLFAKLNFAKGTLSPSEFKYYDDLYDNMLEELPYLPGRPDLLIYLDASLETLLRRIAKRGRPFEIDNFDENKDY 162 (216)
T ss_pred chhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCCCCCCEEEEEeCCHHHHHHHHHHhCCCcccccccchHHH
Confidence 23333333333322 23335557999999999999999999874211101110223
Q ss_pred HHHHHhh----cc----CCCccCCccEEEEcCChhhHHHHHHHhc
Q 007244 141 VNRMLQK----KE----LPKLSEGFSRITLCQNENDVQAALDTYS 177 (611)
Q Consensus 141 i~rm~~~----~e----~P~~~EgFd~V~vv~~~~evd~av~~~~ 177 (611)
++++.+. ++ .|...=..+.+-++.++++...++..+.
T Consensus 163 ~~~l~~~Y~~~~~~~~~~~~l~i~~~~~D~~~~~~d~~~v~~~I~ 207 (216)
T COG1428 163 LKDLHRRYDDWFENYDACPVLGIDGDSIDFVNNEQDLEKVLDQIL 207 (216)
T ss_pred HHHHHHHHHHHHHhcccCCeeeeccceecccCCHHHHHHHHHHHH
Confidence 3333332 21 3333222345666667777777666543
No 171
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=98.02 E-value=6.7e-05 Score=75.61 Aligned_cols=34 Identities=21% Similarity=0.338 Sum_probs=27.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecc
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQD 54 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D 54 (611)
|+.+|.|.||+||||||+++.+++.++.. +++.+
T Consensus 1 ~~~~i~i~G~~GsGKst~~~~la~~~~~~--~~~~g 34 (217)
T TIGR00017 1 MAMIIAIDGPSGAGKSTVAKAVAEKLGYA--YLDSG 34 (217)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCCc--eeeCc
Confidence 45689999999999999999999988843 35544
No 172
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=97.99 E-value=0.00011 Score=82.62 Aligned_cols=37 Identities=22% Similarity=0.341 Sum_probs=31.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhc
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN 57 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~ 57 (611)
.+.+|.+.|+|||||||+++.+++.++ +.+++.|.++
T Consensus 283 ~~~ii~i~G~sgsGKst~a~~la~~l~--~~~~d~g~~Y 319 (512)
T PRK13477 283 RQPIIAIDGPAGAGKSTVTRAVAKKLG--LLYLDTGAMY 319 (512)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC--CeEecCCcee
Confidence 667999999999999999999999998 5668766553
No 173
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.99 E-value=1.5e-05 Score=74.36 Aligned_cols=87 Identities=18% Similarity=0.295 Sum_probs=56.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeE-Ee--------------------ecchh----ccCCCCcH--------HHHH
Q 007244 22 LVIMVGAPGSGKSTFCEHVMRSSARPWA-RI--------------------CQDTI----NKGKSGTK--------VQCL 68 (611)
Q Consensus 22 LIvLvG~PGSGKST~A~~L~~~~~~~~~-~I--------------------s~D~i----~~~~~~~~--------~~~~ 68 (611)
+|+|+||+||||||+++.|++.++..+. .+ +.+.+ ..+.+..+ ....
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~~e~~g~~~~~v~~~~~~~~~~~~~f~e~~~~~~~~yg~~~ 80 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGEVDGVDYHFVSKEEFERLIENGEFLEWAEFHGNYYGTSK 80 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCccceecccccccCCCCCccCCceeEEeCHHHHHHHHHcCCeEEEEEEcCEEecCcH
Confidence 4789999999999999999987543211 11 11111 01111110 0122
Q ss_pred HHHHHHHHCCCcEEEecCCCCHHHHHHHHHhCCCCCeEEEEEEeCC
Q 007244 69 TSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLP 114 (611)
Q Consensus 69 ~~~~~~L~~Gk~VIID~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p 114 (611)
..+.+.++.|+.+|+|. .+.....++.....+.+||+.+|
T Consensus 81 ~~i~~~~~~g~~~il~~------~~~~~~~l~~~~~~~~~I~i~~~ 120 (137)
T cd00071 81 AAVEEALAEGKIVILEI------DVQGARQVKKSYPDAVSIFILPP 120 (137)
T ss_pred HHHHHHHhCCCeEEEEe------cHHHHHHHHHcCCCeEEEEEECC
Confidence 56778889999999999 66666666334567788899988
No 174
>PRK13974 thymidylate kinase; Provisional
Probab=97.97 E-value=0.0001 Score=73.80 Aligned_cols=108 Identities=15% Similarity=0.153 Sum_probs=63.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCC--------eEEee--c---------chhc--cCC--CCcHH-----------
Q 007244 20 QILVIMVGAPGSGKSTFCEHVMRSSARP--------WARIC--Q---------DTIN--KGK--SGTKV----------- 65 (611)
Q Consensus 20 p~LIvLvG~PGSGKST~A~~L~~~~~~~--------~~~Is--~---------D~i~--~~~--~~~~~----------- 65 (611)
..+|+|.|++||||||+++.+.+.+... +.... . +.+. .+. .....
T Consensus 3 g~~i~~eG~dGsGKsT~~~~l~~~l~~~g~~~~~~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~adr~~ 82 (212)
T PRK13974 3 GKFIVLEGIDGCGKTTQIDHLSKWLPSSGLMPKGAKLIITREPGGTLLGKSLRELLLDTSKDNSPSPLAELLLYAADRAQ 82 (212)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCccccCCeeeeeeCCCCCchHHHHHHHHcCCCcccCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999998766411 11111 0 1111 011 11110
Q ss_pred HHHHHHHHHHHCCCcEEEecCCCCHHH------------HHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244 66 QCLTSASSALKKGKSVFLDRCNLEREQ------------RTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (611)
Q Consensus 66 ~~~~~~~~~L~~Gk~VIID~tnl~~~~------------R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~ 127 (611)
.+...+..+|..|..||.|......-. ...+..+ .....+-.+|+|++|.+++.+|+..|..
T Consensus 83 ~~~~~i~~~l~~g~~Vi~DRy~~S~~ay~g~~r~~~~~~~~~l~~~~~~~~~pd~~i~ld~~~~~~~~R~~~R~d 157 (212)
T PRK13974 83 HVSKIIRPALENGDWVISDRFSGSTLAYQGYGRGLDLELIKNLESIATQGLSPDLTFFLEISVEESIRRRKNRKP 157 (212)
T ss_pred HHHHHHHHHHHCCCEEEEcCchhhHHHHccccCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhccc
Confidence 011245667888988888884333211 1222222 1111244689999999999999988753
No 175
>PRK15453 phosphoribulokinase; Provisional
Probab=97.97 E-value=8.7e-05 Score=77.40 Aligned_cols=40 Identities=18% Similarity=0.209 Sum_probs=32.4
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEeecchhc
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTIN 57 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~---~~~~~Is~D~i~ 57 (611)
.++.+|.++|.|||||||+++.+.+.++ .....++.|.+.
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh 45 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFH 45 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEeccccc
Confidence 4567999999999999999999987664 235678888775
No 176
>PRK06761 hypothetical protein; Provisional
Probab=97.96 E-value=3.2e-05 Score=80.85 Aligned_cols=108 Identities=19% Similarity=0.155 Sum_probs=67.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEe----ecchhc-----cCCCCcHHH---H--------HHHHHHHHHCCC
Q 007244 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARI----CQDTIN-----KGKSGTKVQ---C--------LTSASSALKKGK 79 (611)
Q Consensus 20 p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~I----s~D~i~-----~~~~~~~~~---~--------~~~~~~~L~~Gk 79 (611)
..+|+|.|+|||||||+++.+.+.+......+ +.+... .....+..+ + .....+.+..|.
T Consensus 3 ~~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~~~~~~~~~p~d~~~~~~~~~eer~~~l~~~~~f~~~l~~~~~~~g~ 82 (282)
T PRK06761 3 TKLIIIEGLPGFGKSTTAKMLNDILSQNGIEVELYLEGNLDHPADYDGVACFTKEEFDRLLSNYPDFKEVLLKNVLKKGD 82 (282)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCcCceEEEEEecCCCCCchhhccccCCCHHHHHHHHHhhhHHHHHHHHHHHHcCC
Confidence 46899999999999999999999876422111 111111 111111111 1 134556777888
Q ss_pred cEEEecCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccc
Q 007244 80 SVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEH 128 (611)
Q Consensus 80 ~VIID~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~ 128 (611)
.+|+-...+...+|..+..-......+..++ ..|.+.+.+|...|-.|
T Consensus 83 ~~i~~~~~l~~~yr~~~~~~~~~~~~v~~~h-~~p~e~i~~R~~~rw~~ 130 (282)
T PRK06761 83 YYLLPYRKIKNEFGDQFSDELFNDISKNDIY-ELPFDKNTELITDRWND 130 (282)
T ss_pred eEEEEehhhhHHHhhhhhhhhcccceeeeee-cCCHHHHHHHHHHHHHH
Confidence 8888776666666666643100112344555 99999999999888654
No 177
>PRK05439 pantothenate kinase; Provisional
Probab=97.96 E-value=3e-05 Score=82.11 Aligned_cols=42 Identities=14% Similarity=0.095 Sum_probs=33.7
Q ss_pred cCCCcEEEEEEcCCCCcHHHHHHHHHHHcC-----CCeEEeecchhc
Q 007244 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA-----RPWARICQDTIN 57 (611)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~-----~~~~~Is~D~i~ 57 (611)
..+.|.+|.+.|+|||||||+|+.|...++ ....+|+.|.+.
T Consensus 82 ~~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy 128 (311)
T PRK05439 82 GQKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFL 128 (311)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccc
Confidence 456789999999999999999999987553 235678887773
No 178
>KOG3078 consensus Adenylate kinase [Nucleotide transport and metabolism]
Probab=97.95 E-value=2.6e-05 Score=79.03 Aligned_cols=106 Identities=22% Similarity=0.316 Sum_probs=77.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeec-chhcc------------------CCCCcHHHHHHHHHHHHHCC-
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ-DTINK------------------GKSGTKVQCLTSASSALKKG- 78 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~-D~i~~------------------~~~~~~~~~~~~~~~~L~~G- 78 (611)
++.=++++|+|||||+|+|..+.+.++.. |+.. |.++. +.+.+.+.+...+...|..+
T Consensus 14 ~~~~~v~~G~pg~gkgt~a~~l~~~~~~~--hl~tGdllr~~ia~~telg~~~~~~~~~g~lvpDeiv~~~l~~~l~~~~ 91 (235)
T KOG3078|consen 14 KGVRAVLLGAPGSGKGTQAPRLTKNFGVI--HISTGDLLRDEIASGTELGKEAKEAIDKGKLVPDEVVVRLLEKRLENPR 91 (235)
T ss_pred cceEEEEEeCCCCCCCccCHHHHHhcCCc--cchhHHHHHHHHhccCcHHHHHHHHHHhcCcCcHHHHHHHHHhhccccc
Confidence 56778999999999999999999998843 4653 44432 33334444445555566666
Q ss_pred --CcEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccccc
Q 007244 79 --KSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHE 129 (611)
Q Consensus 79 --k~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~ 129 (611)
+.+|+|+++.+..+-..+.+. ...+ .+|.|.+|.+.+.+|+..|..|+
T Consensus 92 ~~~~~ildg~Prt~~qa~~l~~~~~~~d---~Vi~l~vp~~~L~~ri~~r~ihp 142 (235)
T KOG3078|consen 92 CQKGFILDGFPRTVQQAEELLDRIAQID---LVINLKVPEEVLVDRITGRRIHP 142 (235)
T ss_pred cccccccCCCCcchHHHHHHHHccCCcc---eEEEecCCHHHHHHHHhcccccC
Confidence 679999998888766665444 3333 48899999999999999998875
No 179
>PRK07933 thymidylate kinase; Validated
Probab=97.93 E-value=0.00018 Score=72.16 Aligned_cols=106 Identities=24% Similarity=0.287 Sum_probs=64.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCC---CeEEeec---------chh----cc--CCC--CcH----------HHHHHHH
Q 007244 22 LVIMVGAPGSGKSTFCEHVMRSSAR---PWARICQ---------DTI----NK--GKS--GTK----------VQCLTSA 71 (611)
Q Consensus 22 LIvLvG~PGSGKST~A~~L~~~~~~---~~~~Is~---------D~i----~~--~~~--~~~----------~~~~~~~ 71 (611)
+|++-|+-||||||+++.|.+.+.. ....+.. +.+ .. +.. ... .+....+
T Consensus 2 ~IviEG~dGsGKST~~~~L~~~L~~~g~~v~~~~~P~~~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~a~R~~~~~~I 81 (213)
T PRK07933 2 LIAIEGVDGAGKRTLTEALRAALEARGRSVATLAFPRYGRSVHADLAAEALHGRHGDLADSVYAMATLFALDRAGARDEL 81 (213)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCccHHHHHHHcCCCCcccCCHHHHHHHHhhhhhhhHHHH
Confidence 7999999999999999999887642 2222211 111 11 111 000 1112446
Q ss_pred HHHHHCCCcEEEecCCCCHHHH-------------HHHHHh--C---CCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244 72 SSALKKGKSVFLDRCNLEREQR-------------TDFVKL--G---GPEVDVHAVVLDLPAKLCISRSVKRIE 127 (611)
Q Consensus 72 ~~~L~~Gk~VIID~tnl~~~~R-------------~~~~~l--~---~~~~~v~vV~Ld~p~e~~~~Rl~~R~~ 127 (611)
..+|..|..||.|...+..-.. ..|+.. . ....+=.+|+|++|.++..+|+.+|+.
T Consensus 82 ~p~l~~g~~VI~DRy~~S~~Ayq~~~~~~~~~~~~~~~~~~~~~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~R~~ 155 (213)
T PRK07933 82 AGLLAAHDVVILDRYVASNAAYSAARLHQDADGEAVAWVAELEFGRLGLPVPDLQVLLDVPVELAAERARRRAA 155 (213)
T ss_pred HHHHhCCCEEEECCccchhHHHhccCCCcccchHHHHHHHHHHHhhcCCCCCCEEEEecCCHHHHHHHHHhhcc
Confidence 6777889999999955443211 123322 1 111234689999999999999999864
No 180
>PLN02318 phosphoribulokinase/uridine kinase
Probab=97.92 E-value=7.7e-05 Score=84.51 Aligned_cols=40 Identities=35% Similarity=0.428 Sum_probs=31.9
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhc
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN 57 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~ 57 (611)
...+.+|.|.|+||||||||++.|+..++ ....|+.|.+.
T Consensus 62 ~~~riIIGIaGpSGSGKTTLAk~LaglLp-~vgvIsmDdy~ 101 (656)
T PLN02318 62 NDGIILVGVAGPSGAGKTVFTEKVLNFMP-SIAVISMDNYN 101 (656)
T ss_pred CCCeEEEEEECCCCCcHHHHHHHHHhhCC-CcEEEEEccee
Confidence 44678999999999999999999998764 23467777653
No 181
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.91 E-value=4.2e-05 Score=77.14 Aligned_cols=36 Identities=19% Similarity=0.152 Sum_probs=28.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcC-----CCeEEeecchhc
Q 007244 22 LVIMVGAPGSGKSTFCEHVMRSSA-----RPWARICQDTIN 57 (611)
Q Consensus 22 LIvLvG~PGSGKST~A~~L~~~~~-----~~~~~Is~D~i~ 57 (611)
+|.|.|++||||||+|+.|...+. ....+|+.|.+.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~ 41 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFL 41 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCccc
Confidence 578999999999999999988763 234567777663
No 182
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=97.90 E-value=0.00012 Score=76.17 Aligned_cols=100 Identities=23% Similarity=0.262 Sum_probs=64.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHHHHHHHHHHC------CCcEEEecCCCCH-HHH
Q 007244 21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKK------GKSVFLDRCNLER-EQR 93 (611)
Q Consensus 21 ~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L~~------Gk~VIID~tnl~~-~~R 93 (611)
.+|+++|+|||||||-.+.+ +.+| |..|+. + +.. ++....+.+.. .-.++||.-+... ...
T Consensus 2 ~~vIiTGlSGaGKs~Al~~l-ED~G--y~cvDN--l------P~~-Ll~~l~~~~~~~~~~~~~~Ai~iD~R~~~~~~~~ 69 (284)
T PF03668_consen 2 ELVIITGLSGAGKSTALRAL-EDLG--YYCVDN--L------PPS-LLPQLIELLAQSNSKIEKVAIVIDIRSREFFEDL 69 (284)
T ss_pred eEEEEeCCCcCCHHHHHHHH-HhcC--eeEEcC--C------cHH-HHHHHHHHHHhcCCCCceEEEEEeCCChHHHHHH
Confidence 48999999999999988866 6777 654542 2 222 22222223331 1237889855432 122
Q ss_pred HH-HHHhCCCCCeEEEEEEeCCHHHHHHHH-HhcccccCCC
Q 007244 94 TD-FVKLGGPEVDVHAVVLDLPAKLCISRS-VKRIEHEGNL 132 (611)
Q Consensus 94 ~~-~~~l~~~~~~v~vV~Ld~p~e~~~~Rl-~~R~~~~g~~ 132 (611)
.. +..++..+..+.++||+++.+++.+|- ..|..||...
T Consensus 70 ~~~~~~l~~~~~~~~ilFLdA~d~~LirRy~eTRR~HPL~~ 110 (284)
T PF03668_consen 70 FEALDELRKKGIDVRILFLDASDEVLIRRYSETRRRHPLSS 110 (284)
T ss_pred HHHHHHHHhcCCceEEEEEECChHHHHHHHHhccCCCCCCC
Confidence 22 223355588899999999999999996 4677777543
No 183
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=97.88 E-value=9.7e-05 Score=71.80 Aligned_cols=147 Identities=16% Similarity=0.107 Sum_probs=78.0
Q ss_pred EEcCCCCcHHHHHHHHHHHcCCC-e-EEeec--------chh----ccCCCCcH------------HHHHHHHHHHHHCC
Q 007244 25 MVGAPGSGKSTFCEHVMRSSARP-W-ARICQ--------DTI----NKGKSGTK------------VQCLTSASSALKKG 78 (611)
Q Consensus 25 LvG~PGSGKST~A~~L~~~~~~~-~-~~Is~--------D~i----~~~~~~~~------------~~~~~~~~~~L~~G 78 (611)
+=|+.||||||+++.|.+.+... + +.+.. +.+ ........ ..+...+..+|..|
T Consensus 1 ~EGiDGsGKtT~~~~L~~~l~~~~~~~~~~~~~~~~~~g~~ir~~l~~~~~~~~~~~~~l~~a~r~~~~~~~I~~~l~~g 80 (186)
T PF02223_consen 1 FEGIDGSGKTTQIRLLAEALKEKGYKVIITFPPGSTPIGELIRELLRSESELSPEAEALLFAADRAWHLARVIRPALKRG 80 (186)
T ss_dssp EEESTTSSHHHHHHHHHHHHHHTTEEEEEEESSTSSHHHHHHHHHHHTSSTCGHHHHHHHHHHHHHHHHHHTHHHHHHTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHcCCcccccCCCCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 35999999999999998876522 2 12221 111 11111111 11224567889999
Q ss_pred CcEEEecCCCCH------------HHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHh
Q 007244 79 KSVFLDRCNLER------------EQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQ 146 (611)
Q Consensus 79 k~VIID~tnl~~------------~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~ 146 (611)
..||+|...++. .....+........+=.+|+|++|.+++.+|+..|.... .......+.+.++..
T Consensus 81 ~~VI~DRy~~S~lay~~~~~~~~~~~~~~~~~~~~~~~PDl~~~Ldv~pe~~~~R~~~r~~~~--~~~~~~~~~~~~~~~ 158 (186)
T PF02223_consen 81 KIVICDRYIYSTLAYQGAKGELDIDWIWRLNKDIFLPKPDLTFFLDVDPEEALKRIAKRGEKD--DEEEEDLEYLRRVRE 158 (186)
T ss_dssp SEEEEESEHHHHHHHHTTTTSSTHHHHHHHHHHHHTTE-SEEEEEECCHHHHHHHHHHTSSTT--TTTTHHHHHHHHHHH
T ss_pred CEEEEechhHHHHHhCccccCCcchhhhHHHHHhcCCCCCEEEEEecCHHHHHHHHHcCCccc--hHHHHHHHHHHHHHH
Confidence 999999932222 111112111000022258899999999999999998711 111223344444444
Q ss_pred hccCCCccCCccEEEEcCChhhHHHHHHH
Q 007244 147 KKELPKLSEGFSRITLCQNENDVQAALDT 175 (611)
Q Consensus 147 ~~e~P~~~EgFd~V~vv~~~~evd~av~~ 175 (611)
.+..... + ....++++....++++..+
T Consensus 159 ~y~~l~~-~-~~~~~iid~~~~~e~v~~~ 185 (186)
T PF02223_consen 159 AYLELAK-D-PNNWVIIDASRSIEEVHEQ 185 (186)
T ss_dssp HHHHHHH-T-TTTEEEEETTS-HHHHHHH
T ss_pred HHHHHHc-C-CCCEEEEECCCCHHHHHhh
Confidence 4322221 1 1245566655667766654
No 184
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=97.87 E-value=0.00025 Score=71.09 Aligned_cols=110 Identities=26% Similarity=0.330 Sum_probs=70.1
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcCCCe--EEeec--------chhc----cC--CCCcHH----------H-HHHHH
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPW--ARICQ--------DTIN----KG--KSGTKV----------Q-CLTSA 71 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~--~~Is~--------D~i~----~~--~~~~~~----------~-~~~~~ 71 (611)
++.+|++=|+-||||||.++.+.+.+.... +.+.. ..++ ++ ...... + +...+
T Consensus 2 ~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~trEP~~~~ige~iR~~ll~~~~~~~~~~e~lLfaadR~~h~~~~i 81 (208)
T COG0125 2 KGMFIVIEGIDGAGKTTQAELLKERLEERGIKVVLTREPGGTPIGEKIRELLLNGEEKLSPKAEALLFAADRAQHLEEVI 81 (208)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCChHHHHHHHHHcCCccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999887665221 12221 1121 21 122111 1 33566
Q ss_pred HHHHHCCCcEEEecCCCCHHHHHH--------HH----Hh-CCCCCeEEEEEEeCCHHHHHHHHHhcccc
Q 007244 72 SSALKKGKSVFLDRCNLEREQRTD--------FV----KL-GGPEVDVHAVVLDLPAKLCISRSVKRIEH 128 (611)
Q Consensus 72 ~~~L~~Gk~VIID~tnl~~~~R~~--------~~----~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~ 128 (611)
..++..|+.||.|....+.-..++ |+ +. ...-.+-.+++||+|.++.++|..+|...
T Consensus 82 ~pal~~g~vVI~DRy~~Ss~AYQg~~~~~~~~~~~~l~~~~~~~~~PD~ti~Ldv~~e~al~R~~~r~~~ 151 (208)
T COG0125 82 KPALKEGKVVICDRYVDSSLAYQGGGRGLDLDWVLALNEFAPGGLKPDLTLYLDVPPEVALERIRKRGEL 151 (208)
T ss_pred HHhhcCCCEEEECCcccHHHHhhhhccCCCHHHHHHHHHhccCCCCCCEEEEEeCCHHHHHHHHHhcCCc
Confidence 778899999999996555433332 11 12 21113346899999999999999999764
No 185
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.87 E-value=2.3e-06 Score=99.91 Aligned_cols=80 Identities=14% Similarity=0.012 Sum_probs=69.6
Q ss_pred cccccccccccceeecccccccccccCCCCcchhhhcccCCCCCCC----------ccccccCccCCCCCChHHHHHHHH
Q 007244 232 TEEKNSCLEGQEITSLLSDAAGEEVKGTENPEVASVNQNGSSSDVP----------TLAFPSLSTSDFQFNNEKASDVII 301 (611)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~----------SiAfPaIStGi~gfP~~~aa~Iiv 301 (611)
.+.++.|.++-|.+-|.|..+.. .+.+...--+++.+|++++++ |||||+||||+||||.++|+.|++
T Consensus 592 ~~g~L~~~~vIh~vGp~~~~~~~--~~~l~~~~~~~L~~Aee~~~~~~~~~~~~~~sia~p~istgv~~~p~~~a~~i~~ 669 (725)
T PRK13341 592 PAGKLKLLYSIPAVGPAWALLSE--DELLYKALYSALLEAEELWLKLQWDQSLLQQSLEMPGWSTGIEQWPEELALGIDS 669 (725)
T ss_pred CCCeeEEEEeccccChHhhhcCc--cchhHHHHHHHHHHHHHHhcccccchhHHHHHHHhcCCccceecCCcccccccCH
Confidence 67788899999999998876332 445666677888999999999 999999999999999999999999
Q ss_pred HHHHHHHHhcCC
Q 007244 302 EKVEEFVNKLGN 313 (611)
Q Consensus 302 ~tv~~f~~~~~~ 313 (611)
++++.|+.+++.
T Consensus 670 ~~i~~~~~~~~~ 681 (725)
T PRK13341 670 KLIKRWLAQGPD 681 (725)
T ss_pred HHHHHHHhcCCc
Confidence 999999998765
No 186
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=97.85 E-value=8.1e-05 Score=81.50 Aligned_cols=32 Identities=22% Similarity=0.301 Sum_probs=27.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh
Q 007244 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (611)
Q Consensus 22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i 56 (611)
.|.|+|.+||||||+++.|.+ +| +.+|+.|.+
T Consensus 3 ~IgltG~igsGKStv~~~L~~-~G--~~vidaD~i 34 (395)
T PRK03333 3 RIGLTGGIGAGKSTVAARLAE-LG--AVVVDADVL 34 (395)
T ss_pred EEEEECCCCCCHHHHHHHHHH-CC--CeEEehHHH
Confidence 589999999999999999976 67 566888777
No 187
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=97.85 E-value=5.7e-05 Score=75.29 Aligned_cols=35 Identities=26% Similarity=0.403 Sum_probs=29.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i 56 (611)
+..+|.|+|.|||||||+++.+.+ +| +.+++.|.+
T Consensus 1 ~~~iIglTG~igsGKStva~~~~~-~G--~~vidaD~v 35 (201)
T COG0237 1 MMLIIGLTGGIGSGKSTVAKILAE-LG--FPVIDADDV 35 (201)
T ss_pred CceEEEEecCCCCCHHHHHHHHHH-cC--CeEEEccHH
Confidence 457899999999999999998877 77 566887766
No 188
>cd02900 Macro_Appr_pase Macro domain, Appr-1"-pase family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. The yeast protein Ymx7 and related proteins in this family contain a stand-alone macro domain and may be specific phosphatases catalyzing the conversion of ADP-ribose-1"-monophosphate (Appr-1"-p) to ADP-ribose. Appr-1"-p is an intermediate in a metabolic pathway involved in pre-tRNA splicing.
Probab=97.85 E-value=7.1e-06 Score=80.75 Aligned_cols=72 Identities=11% Similarity=-0.037 Sum_probs=49.3
Q ss_pred ccccccceeecccccccccccCCCCcchhhhcccCCCC--CCCccccccCccCCCCCChHHHHHHHHHHHHHHH
Q 007244 237 SCLEGQEITSLLSDAAGEEVKGTENPEVASVNQNGSSS--DVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFV 308 (611)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~--~~~SiAfPaIStGi~gfP~~~aa~Iiv~tv~~f~ 308 (611)
.+...-|+.+...+.......+.....--+++..+..+ +++|||||+||||+||||.++||++++.++++|+
T Consensus 113 ~~~~iIHaPtm~~P~~~~~~~~~l~~a~~~~L~~a~~~~~~i~sIa~P~igTGvgg~p~~~aA~~m~~ai~~f~ 186 (186)
T cd02900 113 GIPYLIHAPTMRVPSPVITGTEPVFDAMWNALNAIPKENQEINTLVLPGLGTGYGGVPPEIAAKQMAFAIRLFN 186 (186)
T ss_pred CCCEEEEcCcccCCCCCCCcHHHHHHHHHHHHHHHHhccCCCCEEEECchhcCCCCCCHHHHHHHHHHHHHHhC
Confidence 36777776443232101111122223344556666666 8999999999999999999999999999999883
No 189
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=97.84 E-value=0.00013 Score=75.99 Aligned_cols=115 Identities=22% Similarity=0.347 Sum_probs=66.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCC-CeEEeecchhcc---------CCC--CcH---HHHHHHHHHHHHCC--------
Q 007244 22 LVIMVGAPGSGKSTFCEHVMRSSAR-PWARICQDTINK---------GKS--GTK---VQCLTSASSALKKG-------- 78 (611)
Q Consensus 22 LIvLvG~PGSGKST~A~~L~~~~~~-~~~~Is~D~i~~---------~~~--~~~---~~~~~~~~~~L~~G-------- 78 (611)
+|.|+|++|||||||++.|...++. ...+++.|.+.. +.. ... ..........|+.|
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~~~~~~~~r~~~g~~~~~p~~~~~d~l~~~l~~Lk~g~~i~~P~y 80 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDYHSLDRKGRKETGITALDPRANNFDLMYEQLKALKEGQAIEKPIY 80 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECcccccCCHHHHHHhhcccccccchhHHHHHHHHHHHHCCCCcccccc
Confidence 5789999999999999999987653 244677776632 000 000 01112222334433
Q ss_pred ----------------CcEEEecCC-CCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHH
Q 007244 79 ----------------KSVFLDRCN-LEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVV 141 (611)
Q Consensus 79 ----------------k~VIID~tn-l~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi 141 (611)
..+|+|+.. +.......+.++ .||+++|.++.+.|..+|....++ ...+++.
T Consensus 81 ~~~~~~~~~~~~i~~~~ivIvEG~~~l~~~~l~~~~D~--------~I~vd~~~e~r~~r~i~Rd~~rrG---~s~e~v~ 149 (273)
T cd02026 81 NHVTGLIDPPELIKPTKIVVIEGLHPLYDERVRELLDF--------SVYLDISDEVKFAWKIQRDMAERG---HSLEDVL 149 (273)
T ss_pred cccCCCcCCcEEcCCCCEEEEeeehhhCchhhhhhccE--------EEEEECChhHHHHHHHHHHHHHhC---CCHHHHH
Confidence 236777744 222222223222 889999999997776666543221 3556666
Q ss_pred HHHHhh
Q 007244 142 NRMLQK 147 (611)
Q Consensus 142 ~rm~~~ 147 (611)
.++..+
T Consensus 150 ~~i~~r 155 (273)
T cd02026 150 ASIEAR 155 (273)
T ss_pred HHHHhh
Confidence 666543
No 190
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.83 E-value=7.3e-05 Score=78.55 Aligned_cols=40 Identities=20% Similarity=0.175 Sum_probs=30.4
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHHcC-----CCeEEeecchh
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA-----RPWARICQDTI 56 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~-----~~~~~Is~D~i 56 (611)
.+.|.+|.+.|++||||||+++.|...+. .....++.|.+
T Consensus 59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f 103 (290)
T TIGR00554 59 AKIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGF 103 (290)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccc
Confidence 46789999999999999999988755432 23456677765
No 191
>PLN02165 adenylate isopentenyltransferase
Probab=97.79 E-value=0.00017 Score=76.89 Aligned_cols=110 Identities=19% Similarity=0.197 Sum_probs=66.9
Q ss_pred cCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhc--c---------------C-----------CC--CcHH
Q 007244 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN--K---------------G-----------KS--GTKV 65 (611)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~--~---------------~-----------~~--~~~~ 65 (611)
.+.++.+|+|+||+||||||+|..|++.++. .+|+.|.+. . + .. .+..
T Consensus 39 ~~~~g~iivIiGPTGSGKStLA~~LA~~l~~--eIIsaDs~QvYkgldIgTakpt~~er~gv~Hhli~~~~~~~~~~sv~ 116 (334)
T PLN02165 39 QNCKDKVVVIMGATGSGKSRLSVDLATRFPS--EIINSDKMQVYDGLKITTNQITIQDRRGVPHHLLGELNPDDGELTAS 116 (334)
T ss_pred cCCCCCEEEEECCCCCcHHHHHHHHHHHcCC--ceecCChheeECCcccccCCCCHHHHcCCChhhhheeccccceeeHH
Confidence 3455669999999999999999999999873 346665540 0 0 00 0111
Q ss_pred H----HHHHHHHHHHCCCcEEEec-CCCCHHHHHH-H-------HHh-CC-----CCCeEEEEEEeCCHHHHHHHHHhcc
Q 007244 66 Q----CLTSASSALKKGKSVFLDR-CNLEREQRTD-F-------VKL-GG-----PEVDVHAVVLDLPAKLCISRSVKRI 126 (611)
Q Consensus 66 ~----~~~~~~~~L~~Gk~VIID~-tnl~~~~R~~-~-------~~l-~~-----~~~~v~vV~Ld~p~e~~~~Rl~~R~ 126 (611)
. ....+.+....|+..|+-+ |+++-+.-.. + ..- +. ..+...+++++.+.+++.+|+.+|-
T Consensus 117 ~F~~~a~~~I~~i~~~~~~PI~vGGTglYi~aLl~g~~dpe~~p~~tg~~~~s~~~~~~~~~i~l~~dr~~L~~RI~~Rv 196 (334)
T PLN02165 117 EFRSLASLSISEITSRQKLPIVAGGSNSFIHALLADRFDPEIYPFSSGSSLISSDLRYDCCFIWVDVSEPVLFEYLSKRV 196 (334)
T ss_pred HHHHHHHHHHHHHHHCCCcEEEECChHHHHHHHHcCCCCCccChhhcCCCccccccCCCeEEEEECCCHHHHHHHHHHHH
Confidence 1 2244455566777655544 4433221111 0 000 11 1244567889999999999999996
Q ss_pred c
Q 007244 127 E 127 (611)
Q Consensus 127 ~ 127 (611)
.
T Consensus 197 d 197 (334)
T PLN02165 197 D 197 (334)
T ss_pred H
Confidence 5
No 192
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.78 E-value=7e-05 Score=67.47 Aligned_cols=63 Identities=22% Similarity=0.378 Sum_probs=43.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHH-HHHHHHHHCC--CcEEEec
Q 007244 23 VIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCL-TSASSALKKG--KSVFLDR 85 (611)
Q Consensus 23 IvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~-~~~~~~L~~G--k~VIID~ 85 (611)
|+|.||||+||||+++.+++.++.++..++...+.........+.+ ..+..+-..+ ..++||.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe 66 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDE 66 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEET
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeecc
Confidence 6899999999999999999999977778887777644444443333 3333333333 3466666
No 193
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.77 E-value=7.8e-05 Score=61.34 Aligned_cols=61 Identities=21% Similarity=0.366 Sum_probs=40.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcC-CCeEEeecchhccCCCCcHHHHHHHHHHHHHCCCcEEEecCCCCHHHHHHHHHh-
Q 007244 22 LVIMVGAPGSGKSTFCEHVMRSSA-RPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNLEREQRTDFVKL- 99 (611)
Q Consensus 22 LIvLvG~PGSGKST~A~~L~~~~~-~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L~~Gk~VIID~tnl~~~~R~~~~~l- 99 (611)
+|+++|+|||||||+++.+.+.++ ..+..++. .+|+|+.......+. ..+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l~~~~~~~i~~--------------------------~~I~eg~~~~~~~~~--~~~~ 52 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQLGGRSVVVLDE--------------------------IVILEGLYASYKSRD--ARIR 52 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhcCCCEEEEeE--------------------------EEEecchhhhhhhHH--hhcc
Confidence 478999999999999999998852 22333433 788888666555543 222
Q ss_pred CCCCCeEEEEEEeC
Q 007244 100 GGPEVDVHAVVLDL 113 (611)
Q Consensus 100 ~~~~~~v~vV~Ld~ 113 (611)
...+. .||+++
T Consensus 53 ~~~d~---~Iyld~ 63 (69)
T cd02019 53 DLADL---KIYLDA 63 (69)
T ss_pred ccccE---EEEEEe
Confidence 23333 666665
No 194
>PF01661 Macro: Macro domain; InterPro: IPR002589 The Macro or A1pp domain is a module of about 180 amino acids which can bind ADP-ribose, an NAD metabolite or related ligands. Binding to ADP-ribose could be either covalent or non-covalent []: in certain cases it is believed to bind non-covalently []; while in other cases (such as Aprataxin) it appears to bind both non-covalently through a zinc finger motif, and covalently through a separate region of the protein []. The domain was described originally in association with ADP-ribose 1''-phosphate (Appr-1''-P) processing activity (A1pp) of the yeast YBR022W protein []. The domain is also called Macro domain as it is the C-terminal domain of mammalian core histone macro-H2A [, ]. Macro domain proteins can be found in eukaryotes, in (mostly pathogenic) bacteria, in archaea and in ssRNA viruses, such as coronaviruses, Rubella and Hepatitis E viruses. In vertebrates the domain occurs e.g. in histone macroH2A, in predicted poly-ADP-ribose polymerases (PARPs) and in B aggressive lymphoma (BAL) protein. The macro domain can be associated with catalytic domains, such as PARP, or sirtuin. The Macro domain can recognise ADP-ribose or in some cases poly-ADP-ribose, which can be involved in ADP-ribosylation reactions that occur in important processes, such as chromatin biology, DNA repair and transcription regulation []. The human macroH2A1.1 Macro domain binds an NAD metabolite O-acetyl-ADP-ribose []. The Macro domain has been suggested to play a regulatory role in ADP-ribosylation, which is involved in inter- and intracellular signaling, transcriptional regulation, DNA repair pathways and maintenance of genomic stability, telomere dynamics, cell differentiation and proliferation, and necrosis and apoptosis. The 3D structure of the Macro domain has a mixed alpha/beta fold of a mixed beta sheet sandwiched between four helices. Several Macro domain only domains are shorter than the structure of AF1521 and lack either the first strand or the C-terminal helix 5. Well conserved residues form a hydrophobic cleft and cluster around the AF1521-ADP-ribose binding site [, , , ]. ; PDB: 2DX6_A 2XD7_D 3Q71_A 2FAV_B 1SPV_A 3EKE_A 3EJF_A 1YD9_B 3GPG_B 3GPQ_A ....
Probab=97.74 E-value=6.4e-06 Score=73.72 Aligned_cols=70 Identities=10% Similarity=0.143 Sum_probs=55.4
Q ss_pred ccccccccccccceeecccccc-cccccCCCCcchhhhcccCCCCCCCccccccCccCCCCCChHHHHHHH
Q 007244 231 ITEEKNSCLEGQEITSLLSDAA-GEEVKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVI 300 (611)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~~~~~~~SiAfPaIStGi~gfP~~~aa~Ii 300 (611)
+...++.+.++.|.+.|.+... ..+....+...-..|+..+.+++++|||||+|+||++|||.+++++|+
T Consensus 48 t~~~~l~~~~Iih~v~P~~~~~~~~~~~~~L~~~~~~~l~~a~~~~~~sIa~P~ig~G~~g~~~~~~a~i~ 118 (118)
T PF01661_consen 48 TPGGNLPCKYIIHAVGPTYNSPGEKNSYEALESAYRNALQKAEENGIKSIAFPAIGTGIGGFPWDEVAEIM 118 (118)
T ss_dssp EEETTSSSSEEEEEEEEETTTSTSTTHHHHHHHHHHHHHHHHHHTTTSEEEEESTTSSTTSBTHHHHHHHH
T ss_pred ecCCCccccceEEEecceeccccccccHHHHHHHHHHHHHHHHHcCCcccccCcccCCCCCCCHHHHHhhC
Confidence 4556777999999998888531 133334444566678888999999999999999999999999999986
No 195
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=97.73 E-value=0.00031 Score=72.82 Aligned_cols=37 Identities=19% Similarity=0.251 Sum_probs=29.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcC---CCeEEeecchhcc
Q 007244 22 LVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINK 58 (611)
Q Consensus 22 LIvLvG~PGSGKST~A~~L~~~~~---~~~~~Is~D~i~~ 58 (611)
+|.++|.|||||||+++++.+.++ .....|+.|.+..
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr 40 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR 40 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence 578999999999999999887654 3467888888753
No 196
>PHA00729 NTP-binding motif containing protein
Probab=97.70 E-value=0.0002 Score=72.54 Aligned_cols=105 Identities=12% Similarity=0.075 Sum_probs=61.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh--cc---CCCCcHHHHHHHHHHHHHCC---CcEEEecCCCCH-
Q 007244 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI--NK---GKSGTKVQCLTSASSALKKG---KSVFLDRCNLER- 90 (611)
Q Consensus 20 p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i--~~---~~~~~~~~~~~~~~~~L~~G---k~VIID~tnl~~- 90 (611)
...|+|+|+||+||||+|.+++..++.....+..+.. .. ..+.....+...+..++... ..+|||....-.
T Consensus 17 f~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d~~~~~~fid~~~Ll~~L~~a~~~~~~~dlLIIDd~G~~~~ 96 (226)
T PHA00729 17 FVSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQYVQNSYFFELPDALEKIQDAIDNDYRIPLIIFDDAGIWLS 96 (226)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHhcCCcEEEEEHHHHHHHHHHHHhcCCCCCEEEEeCCchhhc
Confidence 3579999999999999999999886522222222211 11 12223444555555555443 236999822111
Q ss_pred ---HHH---HHHHHh----C-CCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244 91 ---EQR---TDFVKL----G-GPEVDVHAVVLDLPAKLCISRSVKRIE 127 (611)
Q Consensus 91 ---~~R---~~~~~l----~-~~~~~v~vV~Ld~p~e~~~~Rl~~R~~ 127 (611)
+.+ ..+..+ + ... .+++..++.+.|.+|+..|+.
T Consensus 97 ~~~wh~~~~~~yf~L~~aLrSR~~---l~il~~ls~edL~~~Lr~Rg~ 141 (226)
T PHA00729 97 KYVWYEDYMKTFYKIYALIRTRVS---AVIFTTPSPEDLAFYLREKGW 141 (226)
T ss_pred ccchhhhccchHHHHHHHHHhhCc---EEEEecCCHHHHHHHHHhCCC
Confidence 111 122222 1 222 377888999999999999976
No 197
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=97.70 E-value=0.00016 Score=73.79 Aligned_cols=108 Identities=19% Similarity=0.204 Sum_probs=75.1
Q ss_pred ccCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccC--------------------C-------------C
Q 007244 15 EKKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKG--------------------K-------------S 61 (611)
Q Consensus 15 ~~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~--------------------~-------------~ 61 (611)
.+-..|.+|++-|+||.||||+|..++.+++... .|+.|.|++= | .
T Consensus 84 r~~~~p~IILIGGasGVGkStIA~ElA~rLgI~~-visTD~IREvlR~ii~~~l~PtLh~Ssy~Awkalr~~~~~~piia 162 (299)
T COG2074 84 RKMKRPLIILIGGASGVGKSTIAGELARRLGIRS-VISTDSIREVLRKIISPELLPTLHTSSYDAWKALRDPTDENPIIA 162 (299)
T ss_pred hccCCCeEEEecCCCCCChhHHHHHHHHHcCCce-eecchHHHHHHHHhCCHHhcchhhHhHHHHHHHhcCCCCCcchhh
Confidence 3456799999999999999999999999999654 5788877420 0 0
Q ss_pred CcHHH---H----HHHHHHHHHCCCcEEEecCCCCHHHHHHHHHhCCCCC-eEEEEEEeCCHHHHHHHHHhccc
Q 007244 62 GTKVQ---C----LTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEV-DVHAVVLDLPAKLCISRSVKRIE 127 (611)
Q Consensus 62 ~~~~~---~----~~~~~~~L~~Gk~VIID~tnl~~~~R~~~~~l~~~~~-~v~vV~Ld~p~e~~~~Rl~~R~~ 127 (611)
+..++ + -..+.+++.+|.++||++.++-+.....- .. +. .+.+++.-.+.++...|.-.|.+
T Consensus 163 GF~dqa~~V~~GI~~VI~RAi~eG~~lIIEGvHlVPg~i~~~---~~-~~n~~~~~l~i~dee~Hr~RF~~R~~ 232 (299)
T COG2074 163 GFEDQASAVMVGIEAVIERAIEEGEDLIIEGVHLVPGLIKEE---AL-GNNVFMFMLYIADEELHRERFYDRIR 232 (299)
T ss_pred hHHHHhHHHHHHHHHHHHHHHhcCcceEEEeeeeccccccHh---hh-ccceEEEEEEeCCHHHHHHHHHHHHH
Confidence 00111 1 15668999999999999988776544432 22 22 23344445677888889988865
No 198
>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]
Probab=97.64 E-value=0.00056 Score=70.48 Aligned_cols=112 Identities=16% Similarity=0.193 Sum_probs=73.9
Q ss_pred cCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCC-eEEeecchhccC-------------------------------CCCc
Q 007244 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARP-WARICQDTINKG-------------------------------KSGT 63 (611)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~-~~~Is~D~i~~~-------------------------------~~~~ 63 (611)
....-++|++-|+-|||||+||+.|+++++.. |..+..|.+.-+ ....
T Consensus 67 f~enSkvI~VeGnI~sGK~klAKelAe~Lgf~hfP~~~~d~iyvdsyg~D~r~l~~~~p~~cr~~di~~Fy~dPS~dlsa 146 (393)
T KOG3877|consen 67 FHENSKVIVVEGNIGSGKTKLAKELAEQLGFVHFPEFRMDDIYVDSYGNDLRNLYNKFPARCRLPDISMFYKDPSGDLSA 146 (393)
T ss_pred hcccceEEEEeCCcccCchhHHHHHHHHhCCcccccccccceeecccCccchhccccCCcccCchhHHHhccCCCccHHH
Confidence 34556899999999999999999999999832 233344444100 0000
Q ss_pred ----------HHHHHHHHHHHHHCCCcEEEecCCCCH-----HH----------HHHHHHhCCC-----CCeEEEEEEeC
Q 007244 64 ----------KVQCLTSASSALKKGKSVFLDRCNLER-----EQ----------RTDFVKLGGP-----EVDVHAVVLDL 113 (611)
Q Consensus 64 ----------~~~~~~~~~~~L~~Gk~VIID~tnl~~-----~~----------R~~~~~l~~~-----~~~v~vV~Ld~ 113 (611)
..+..+++.-.|..|..||++.+++.. .. +..+-.++.. =-+-.+||+|+
T Consensus 147 ~~Q~r~y~~R~~QY~dAL~HiL~TGQGVVLERsp~SDFVF~eAM~~qgyi~~~~~~hYnevr~nti~~ll~PHLViYld~ 226 (393)
T KOG3877|consen 147 AMQDRIYNCRFDQYLDALAHILNTGQGVVLERSPHSDFVFAEAMRDQGYIGHEYFKHYNEVRKNTIPQLLWPHLVIYLDT 226 (393)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhcCCeEEEecCcchhHHHHHHHHhcCcchhHHHHHHHHHHhhhhhhhcCccEEEEEcC
Confidence 112336777788899999999977654 11 1112122111 11346999999
Q ss_pred CHHHHHHHHHhccc
Q 007244 114 PAKLCISRSVKRIE 127 (611)
Q Consensus 114 p~e~~~~Rl~~R~~ 127 (611)
|.+.+++|+.+|+.
T Consensus 227 Pv~~v~~~Ik~rg~ 240 (393)
T KOG3877|consen 227 PVNKVLENIKRRGN 240 (393)
T ss_pred CcHHHHHHHHhcCC
Confidence 99999999999976
No 199
>PRK00023 cmk cytidylate kinase; Provisional
Probab=97.58 E-value=0.00088 Score=67.86 Aligned_cols=34 Identities=21% Similarity=0.318 Sum_probs=28.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecch
Q 007244 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDT 55 (611)
Q Consensus 20 p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~ 55 (611)
+.+|.+.|+|||||||+++.+++.++.. +++.+.
T Consensus 4 ~~~i~i~g~~gsGksti~~~la~~~~~~--~~~~~~ 37 (225)
T PRK00023 4 AIVIAIDGPAGSGKGTVAKILAKKLGFH--YLDTGA 37 (225)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCC--cccCch
Confidence 4789999999999999999999999843 365544
No 200
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.56 E-value=0.0019 Score=64.77 Aligned_cols=31 Identities=26% Similarity=0.349 Sum_probs=26.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeec
Q 007244 21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ 53 (611)
Q Consensus 21 ~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~ 53 (611)
.+|-+=||+||||||+|+.+++.++.. +++.
T Consensus 5 ~~IAIDGPagsGKsTvak~lA~~Lg~~--yldT 35 (222)
T COG0283 5 IIIAIDGPAGSGKSTVAKILAEKLGFH--YLDT 35 (222)
T ss_pred eEEEEeCCCccChHHHHHHHHHHhCCC--eecc
Confidence 678999999999999999999999944 4663
No 201
>PRK13976 thymidylate kinase; Provisional
Probab=97.53 E-value=0.001 Score=66.69 Aligned_cols=105 Identities=20% Similarity=0.190 Sum_probs=63.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCC----eEEeec--------chhcc-----CCCCcHH-----------HHHHHHHH
Q 007244 22 LVIMVGAPGSGKSTFCEHVMRSSARP----WARICQ--------DTINK-----GKSGTKV-----------QCLTSASS 73 (611)
Q Consensus 22 LIvLvG~PGSGKST~A~~L~~~~~~~----~~~Is~--------D~i~~-----~~~~~~~-----------~~~~~~~~ 73 (611)
+|++-|+.||||||+++.|.+.+... -+++.. ..+++ ....... .+...+..
T Consensus 2 fIv~EGiDGsGKsTq~~~L~~~L~~~~g~~~v~~~~eP~~~~~g~~ir~~l~~~~~~~~~~~~llf~a~R~~~~~~~I~p 81 (209)
T PRK13976 2 FITFEGIDGSGKTTQSRLLAEYLSDIYGENNVVLTREPGGTSFNELVRGLLLSLKNLDKISELLLFIAMRREHFVKVILP 81 (209)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCcceEEeeCCCCCHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999998776421 122221 11111 1111111 11244677
Q ss_pred HHHCCCcEEEecCCCCHHHHHH--------HH-Hh-C--CCCCeEEEEEEeCCHHHHHHHHHhcc
Q 007244 74 ALKKGKSVFLDRCNLEREQRTD--------FV-KL-G--GPEVDVHAVVLDLPAKLCISRSVKRI 126 (611)
Q Consensus 74 ~L~~Gk~VIID~tnl~~~~R~~--------~~-~l-~--~~~~~v~vV~Ld~p~e~~~~Rl~~R~ 126 (611)
+|..|..||.|...++.-..+. |+ .+ . ....+=.+|+|++|.+++.+|..+|.
T Consensus 82 ~l~~G~~VI~DRy~~S~~Ayq~~~~g~~~~~i~~l~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~~~ 146 (209)
T PRK13976 82 ALLQGKIVICDRFIDSTIAYQGYGCGVDLSLIRDLNDLVVDKYPDITFVLDIDIELSLSRADKNG 146 (209)
T ss_pred HHHCCCEEEECCCcCHHHHhccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHhcccc
Confidence 8899999999996555422221 22 22 1 11123468899999999999986543
No 202
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=97.50 E-value=0.0011 Score=64.10 Aligned_cols=32 Identities=22% Similarity=0.421 Sum_probs=25.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEee
Q 007244 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARIC 52 (611)
Q Consensus 20 p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is 52 (611)
+.+++++|.||+||||+.+...+.+ ..+..++
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l-~~~~ivN 35 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL-VKHKIVN 35 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH-hhceeee
Confidence 5789999999999999999988877 1233455
No 203
>COG3896 Chloramphenicol 3-O-phosphotransferase [Defense mechanisms]
Probab=97.48 E-value=0.00078 Score=64.38 Aligned_cols=114 Identities=19% Similarity=0.213 Sum_probs=80.9
Q ss_pred cCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhc-----------cCC---------CCcH---------HH
Q 007244 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN-----------KGK---------SGTK---------VQ 66 (611)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~-----------~~~---------~~~~---------~~ 66 (611)
..++..+|+|-|.|.+|||++|..+..-+..+|.+|.-|.+- .+. -.++ +.
T Consensus 19 g~~~griVlLNG~~saGKSSiA~A~Q~~~a~pwmhigiD~f~e~lpp~~~d~a~g~~~~~~v~~dg~~~v~v~~gpi~e~ 98 (205)
T COG3896 19 GMPEGRIVLLNGGSSAGKSSIALAFQDLAAEPWMHIGIDLFWEALPPEQLDLARGYTWDSAVEADGLEWVTVHPGPILEL 98 (205)
T ss_pred CCCCceEEEecCCCccchhHHHHHHHHHhhcchhhhhHHHHHHhCCHHhhccccccccccccccCCceeeEeechhHHHH
Confidence 556778999999999999999999988887888888766552 110 0000 11
Q ss_pred ----HHHHHHHHHHCCCcEEEecCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccC
Q 007244 67 ----CLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEG 130 (611)
Q Consensus 67 ----~~~~~~~~L~~Gk~VIID~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g 130 (611)
....+...+..|-++|.|....++..--..+++ ..++.+++|=+.+|.|+..+|-..|..+.+
T Consensus 99 ~~~~~r~ai~a~ad~G~~~i~Ddv~~~r~~L~Dc~r~-l~g~~v~~VGV~~p~E~~~~Re~rr~dR~p 165 (205)
T COG3896 99 AMHSRRRAIRAYADNGMNVIADDVIWTREWLVDCLRV-LEGCRVWMVGVHVPDEEGARRELRRGDRHP 165 (205)
T ss_pred HHHHHHHHHHHHhccCcceeehhcccchhhHHHHHHH-HhCCceEEEEeeccHHHHHHHHhhcCCcCc
Confidence 114455566788999999977665444433333 456788899999999999999877876543
No 204
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=97.37 E-value=0.00061 Score=67.42 Aligned_cols=37 Identities=27% Similarity=0.358 Sum_probs=31.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhc
Q 007244 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN 57 (611)
Q Consensus 20 p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~ 57 (611)
-.||-|.|.+.|||||+|+.+.+-++. ...|++|+++
T Consensus 4 ~~ivgiSG~TnsGKTTLak~l~~~f~~-~~lIhqDDFy 40 (225)
T KOG3308|consen 4 TLIVGISGCTNSGKTTLAKSLHRFFPG-CSLIHQDDFY 40 (225)
T ss_pred EEEEEeecccCCCHhHHHHHHHHHccC-Ceeecccccc
Confidence 357889999999999999999888774 3478999885
No 205
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=97.37 E-value=0.0024 Score=65.56 Aligned_cols=100 Identities=18% Similarity=0.191 Sum_probs=62.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHHHHHHHH--HHC---CCcEEEecCCCCH-HHHH
Q 007244 21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSA--LKK---GKSVFLDRCNLER-EQRT 94 (611)
Q Consensus 21 ~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~~~~~~~--L~~---Gk~VIID~tnl~~-~~R~ 94 (611)
.+|+++|++|||||+-++.+ +.+| |+.++ .+ +..-+-+.+.-. ... .-.|++|.-+..- ..-.
T Consensus 2 ~lvIVTGlSGAGKsvAl~~l-EDlG--yycvD--NL------Pp~Llp~~~~~~~~~~~~~~kvAv~iDiRs~~~~~~l~ 70 (286)
T COG1660 2 RLVIVTGLSGAGKSVALRVL-EDLG--YYCVD--NL------PPQLLPKLADLMLTLESRITKVAVVIDVRSREFFGDLE 70 (286)
T ss_pred cEEEEecCCCCcHHHHHHHH-HhcC--eeeec--CC------CHHHHHHHHHHHhhcccCCceEEEEEecccchhHHHHH
Confidence 47999999999999988866 6777 64443 32 221111222211 111 1238899866532 2333
Q ss_pred HHHHh-CCC-CCeEEEEEEeCCHHHHHHHHH-hcccccCC
Q 007244 95 DFVKL-GGP-EVDVHAVVLDLPAKLCISRSV-KRIEHEGN 131 (611)
Q Consensus 95 ~~~~l-~~~-~~~v~vV~Ld~p~e~~~~Rl~-~R~~~~g~ 131 (611)
.++.- +.. ++.+.++||+.+.+++.+|-. .|..|+..
T Consensus 71 ~~l~~l~~~~~~~~~iLFLeA~~~~Lv~RY~etRR~HPL~ 110 (286)
T COG1660 71 EVLDELKDNGDIDPRVLFLEADDETLVRRYSETRRSHPLS 110 (286)
T ss_pred HHHHHHHhcCCCCceEEEEECchhHHHHHHhhhhhcCCCC
Confidence 44444 444 466899999999999999974 56677654
No 206
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=97.35 E-value=0.0014 Score=69.55 Aligned_cols=37 Identities=22% Similarity=0.416 Sum_probs=30.6
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i 56 (611)
.++.+|+++||+||||||+|..|++.++. .+|+.|.+
T Consensus 2 ~~~~~i~i~GptgsGKt~la~~la~~~~~--~iis~Ds~ 38 (307)
T PRK00091 2 MKPKVIVIVGPTASGKTALAIELAKRLNG--EIISADSM 38 (307)
T ss_pred CCceEEEEECCCCcCHHHHHHHHHHhCCC--cEEecccc
Confidence 35679999999999999999999999874 34666653
No 207
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.31 E-value=0.00068 Score=73.17 Aligned_cols=53 Identities=17% Similarity=0.239 Sum_probs=47.5
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHHH
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLT 69 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~~ 69 (611)
-..|.++.|.||||+|||.+|+.++++++..++.++...+...+.++.+..+.
T Consensus 145 ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR 197 (413)
T PLN00020 145 IKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIR 197 (413)
T ss_pred CCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHH
Confidence 46789999999999999999999999999888999999999999998776543
No 208
>cd02749 Macro Macro domain, a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes.
Probab=97.31 E-value=9.3e-05 Score=69.17 Aligned_cols=103 Identities=12% Similarity=0.036 Sum_probs=70.7
Q ss_pred CchhhhhhHHHHHHhhcCCCCCCCCCCCCCCCCCCcccccccc-cccccceeeccccccc-ccccCCCCcchhhhcccCC
Q 007244 195 PDAKIQLGIMKFLKKVDAPSNTGSTASSTQDPVPPQITEEKNS-CLEGQEITSLLSDAAG-EEVKGTENPEVASVNQNGS 272 (611)
Q Consensus 195 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~~ 272 (611)
.....++.+.+.+++.........|++.. +...+.+ +...-|.+.+.+.... ..........-.+|+..+.
T Consensus 36 i~~~~g~~~~~~~~~~~~~~~~~~G~~~~-------t~~~~~~~~~~vih~~~p~~~~~~~~~~~~~l~~a~~~~L~~~~ 108 (147)
T cd02749 36 ISKKAGKELEEESKKLRKELELQVGEAVL-------TKGYNLDGAKYLIHIVGPKYNQGNNKAAFELLKNAYENCLKEAE 108 (147)
T ss_pred HHHHhCHHHHHHHHHHhcccCCCCCCEEE-------CcCCCCCcCCEEEEeCCCCCCCCCCchHHHHHHHHHHHHHHHHH
Confidence 33444566777776665443233344422 3344566 8999999998887622 1122233345566778888
Q ss_pred CCCCCccccccCccCCCCC------ChHHHHHHHHHHH
Q 007244 273 SSDVPTLAFPSLSTSDFQF------NNEKASDVIIEKV 304 (611)
Q Consensus 273 ~~~~~SiAfPaIStGi~gf------P~~~aa~Iiv~tv 304 (611)
..++.|||||.||||++|| |.+.+++|+..++
T Consensus 109 ~~~~~sIa~P~igtG~~g~~~~~~~~~~~~~~i~~~~~ 146 (147)
T cd02749 109 EKGIKSIAFPLIGTGPAGFPKDEREPWEDAIKIALEAA 146 (147)
T ss_pred HcCCCEEEECCcccccCCCCccccCCHHHHHHHHHHHh
Confidence 8899999999999999999 9999999998875
No 209
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.29 E-value=0.00075 Score=59.71 Aligned_cols=36 Identities=31% Similarity=0.533 Sum_probs=28.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCC---eEEeecch
Q 007244 20 QILVIMVGAPGSGKSTFCEHVMRSSARP---WARICQDT 55 (611)
Q Consensus 20 p~LIvLvG~PGSGKST~A~~L~~~~~~~---~~~Is~D~ 55 (611)
+..++|+|||||||||+++.++..+... ...++.+.
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~ 40 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGED 40 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEE
Confidence 4579999999999999999999988754 55555443
No 210
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.25 E-value=0.00031 Score=68.15 Aligned_cols=32 Identities=31% Similarity=0.454 Sum_probs=26.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeec
Q 007244 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQ 53 (611)
Q Consensus 22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~ 53 (611)
+|+++|+|||||||||.+++..++.++..+..
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat 34 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIAT 34 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcC
Confidence 68999999999999999999987755544543
No 211
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=97.20 E-value=0.007 Score=70.73 Aligned_cols=34 Identities=18% Similarity=0.256 Sum_probs=28.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh
Q 007244 21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (611)
Q Consensus 21 ~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i 56 (611)
.+|.+.||+||||||+++.|+++++. .+++.+.+
T Consensus 443 ~~i~i~g~~~~gks~~~~~l~~~~~~--~~~~~~~~ 476 (661)
T PRK11860 443 PVICIDGPTASGKGTVAARVAEALGY--HYLDSGAL 476 (661)
T ss_pred ceEEeeCCCCCCHHHHHHHHHHHhCC--eEecHHHh
Confidence 47888999999999999999999994 44776555
No 212
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.17 E-value=0.0018 Score=58.02 Aligned_cols=81 Identities=16% Similarity=0.296 Sum_probs=44.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchhccCCCCcHHH-----HHHHHHHHHHCCCcEEEecCCCC-
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGKSGTKVQ-----CLTSASSALKKGKSVFLDRCNLE- 89 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D~i~~~~~~~~~~-----~~~~~~~~L~~Gk~VIID~tnl~- 89 (611)
....+++.|+||+||||+++.+...+ +..+..++...+.......... ..............+|+|....-
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~ 97 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLS 97 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhh
Confidence 45578999999999999999999886 4445455443332211111100 00111222234456899996643
Q ss_pred HHHHHHHHHh
Q 007244 90 REQRTDFVKL 99 (611)
Q Consensus 90 ~~~R~~~~~l 99 (611)
......+..+
T Consensus 98 ~~~~~~~~~~ 107 (151)
T cd00009 98 RGAQNALLRV 107 (151)
T ss_pred HHHHHHHHHH
Confidence 2333444443
No 213
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.16 E-value=0.0018 Score=64.28 Aligned_cols=39 Identities=26% Similarity=0.332 Sum_probs=30.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchhcc
Q 007244 20 QILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINK 58 (611)
Q Consensus 20 p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D~i~~ 58 (611)
|.+|+|+||+|+||||.+-+|+..+ +.....|+.|.+|-
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ 42 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRI 42 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSST
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCc
Confidence 7899999999999999888887643 44566788888863
No 214
>PRK09087 hypothetical protein; Validated
Probab=97.14 E-value=0.0028 Score=64.33 Aligned_cols=121 Identities=16% Similarity=0.160 Sum_probs=63.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhc--------------cC---CCCcHHHHHHHHHHHHHCCCcEEE
Q 007244 21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN--------------KG---KSGTKVQCLTSASSALKKGKSVFL 83 (611)
Q Consensus 21 ~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~--------------~~---~~~~~~~~~~~~~~~L~~Gk~VII 83 (611)
..++|+|++||||||+++.+.+..+..| ++.+.+. ++ .......++..+-.....|+.+|+
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~--i~~~~~~~~~~~~~~~~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ili 122 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDALL--IHPNEIGSDAANAAAEGPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLM 122 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCEE--ecHHHcchHHHHhhhcCeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEE
Confidence 3589999999999999999987765333 4432111 00 011233455555556666777777
Q ss_pred ecCCCCHHHHHHHHHh--C-CCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhc
Q 007244 84 DRCNLEREQRTDFVKL--G-GPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKK 148 (611)
Q Consensus 84 D~tnl~~~~R~~~~~l--~-~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~ 148 (611)
-++..........-++ + ..+. ++.+..|.++.+..+.+|.-.. +.-.++++++.-+.+.+
T Consensus 123 ts~~~p~~~~~~~~dL~SRl~~gl---~~~l~~pd~e~~~~iL~~~~~~--~~~~l~~ev~~~La~~~ 185 (226)
T PRK09087 123 TSRLWPSSWNVKLPDLKSRLKAAT---VVEIGEPDDALLSQVIFKLFAD--RQLYVDPHVVYYLVSRM 185 (226)
T ss_pred ECCCChHHhccccccHHHHHhCCc---eeecCCCCHHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHh
Confidence 6643222221111111 1 1222 5566655544444333332211 11256777777777665
No 215
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=97.14 E-value=0.0053 Score=61.70 Aligned_cols=127 Identities=16% Similarity=0.250 Sum_probs=67.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhc-------------------------------cCCCCcHHHHHH
Q 007244 21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN-------------------------------KGKSGTKVQCLT 69 (611)
Q Consensus 21 ~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~-------------------------------~~~~~~~~~~~~ 69 (611)
.|++++||+|+|||.+|-.++++++.+ +|+.|.+. +|. ....+..+
T Consensus 2 ~v~~i~GpT~tGKt~~ai~lA~~~g~p--vI~~Driq~y~~l~v~Sgrp~~~el~~~~RiyL~~r~l~~G~-i~a~ea~~ 78 (233)
T PF01745_consen 2 KVYLIVGPTGTGKTALAIALAQKTGAP--VISLDRIQCYPELSVGSGRPTPSELKGTRRIYLDDRPLSDGI-INAEEAHE 78 (233)
T ss_dssp EEEEEE-STTSSHHHHHHHHHHHH--E--EEEE-SGGG-GGGTTTTT---SGGGTT-EEEES----GGG-S---HHHHHH
T ss_pred cEEEEECCCCCChhHHHHHHHHHhCCC--EEEecceecccccccccCCCCHHHHcccceeeeccccccCCC-cCHHHHHH
Confidence 478999999999999999999999944 46665551 011 12223333
Q ss_pred HHHHHH---HCCCcEEEecCCCCHHHHHHHHHh--CCCCCeEEEEEEeCCH-HHHHHHHHhcccccCCCCCCCHHHHHHH
Q 007244 70 SASSAL---KKGKSVFLDRCNLEREQRTDFVKL--GGPEVDVHAVVLDLPA-KLCISRSVKRIEHEGNLQGGKAAAVVNR 143 (611)
Q Consensus 70 ~~~~~L---~~Gk~VIID~tnl~~~~R~~~~~l--~~~~~~v~vV~Ld~p~-e~~~~Rl~~R~~~~g~~~~~vpeevi~r 143 (611)
.+...+ ..++.+|+++-..+. -..+.+- -..++.+++.++..+. +....|..+|-+..-. ++.....++..
T Consensus 79 ~Li~~v~~~~~~~~~IlEGGSISL--l~~m~~~~~w~~~f~w~i~rl~l~d~~~f~~ra~~Rv~~ML~-p~~~~~Sll~E 155 (233)
T PF01745_consen 79 RLISEVNSYSAHGGLILEGGSISL--LNCMAQDPYWSLDFRWHIRRLRLPDEEVFMARAKRRVRQMLR-PDSSGPSLLEE 155 (233)
T ss_dssp HHHHHHHTTTTSSEEEEEE--HHH--HHHHHH-TTTSSSSEEEEEE-----HHHHHHHHHHHHHHHHS---SSS--HHHH
T ss_pred HHHHHHHhccccCceEEeCchHHH--HHHHHhcccccCCCeEEEEEEECCChHHHHHHHHHHHHHhcC-CCCCCCcHHHH
Confidence 333333 346789999944332 2222222 3367889999998876 5666788777653211 11223356666
Q ss_pred HHhhccCCCc
Q 007244 144 MLQKKELPKL 153 (611)
Q Consensus 144 m~~~~e~P~~ 153 (611)
+...+..|..
T Consensus 156 L~~lW~~p~~ 165 (233)
T PF01745_consen 156 LVALWNDPAL 165 (233)
T ss_dssp HHHHHTSTTH
T ss_pred HHHHHhCccc
Confidence 6666655553
No 216
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=97.13 E-value=0.0033 Score=62.40 Aligned_cols=110 Identities=23% Similarity=0.277 Sum_probs=68.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhcc-------------------------CC----------CC---
Q 007244 21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK-------------------------GK----------SG--- 62 (611)
Q Consensus 21 ~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~-------------------------~~----------~~--- 62 (611)
.+|-|+|-.||||||+++.+. .++ +.+|+.|.+.+ |. |.
T Consensus 2 ~iVGLTGgiatGKStVs~~f~-~~G--~~vIDaD~vaR~vv~PG~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF~~~~ 78 (225)
T KOG3220|consen 2 LIVGLTGGIATGKSTVSQVFK-ALG--IPVIDADVVAREVVEPGTPAYRRIVEAFGTEILLEDGEINRKVLGKRVFSDPK 78 (225)
T ss_pred eEEEeecccccChHHHHHHHH-HcC--CcEecHHHHHHHHhcCCChHHHHHHHHhCceeeccCCcccHHHHhHHHhCCHH
Confidence 378899999999999999765 777 44588776621 00 00
Q ss_pred --------c----HHHHHHHHHHHHHCCCc-EEEecCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhccccc
Q 007244 63 --------T----KVQCLTSASSALKKGKS-VFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHE 129 (611)
Q Consensus 63 --------~----~~~~~~~~~~~L~~Gk~-VIID~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~ 129 (611)
+ +.+.++++...+..|.. +|+|..-+-+. .+.++ .+ .+|.+-|+.++-++|+..|+.
T Consensus 79 ~r~~Ln~IthP~Ir~em~ke~~~~~l~G~r~ivlDiPLLFE~---~~~~~--~~---~tvvV~cd~~~Ql~Rl~~Rd~-- 148 (225)
T KOG3220|consen 79 KRQALNKITHPAIRKEMFKEILKLLLRGYRVIVLDIPLLFEA---KLLKI--CH---KTVVVTCDEELQLERLVERDE-- 148 (225)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHhcCCeEEEEechHHHHH---hHHhh--ee---eEEEEEECcHHHHHHHHHhcc--
Confidence 0 11233666777778866 56666333222 23222 22 377778899999999999984
Q ss_pred CCCCCCCHHHHHHHHHhhc
Q 007244 130 GNLQGGKAAAVVNRMLQKK 148 (611)
Q Consensus 130 g~~~~~vpeevi~rm~~~~ 148 (611)
-..++.-.|...+.
T Consensus 149 -----lse~dAe~Rl~sQm 162 (225)
T KOG3220|consen 149 -----LSEEDAENRLQSQM 162 (225)
T ss_pred -----ccHHHHHHHHHhcC
Confidence 23344445555543
No 217
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.11 E-value=0.0012 Score=66.77 Aligned_cols=72 Identities=18% Similarity=0.308 Sum_probs=43.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHHHHHHHHHHCCCcEEEecCCCCHHHHHHHH
Q 007244 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNLEREQRTDFV 97 (611)
Q Consensus 20 p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L~~Gk~VIID~tnl~~~~R~~~~ 97 (611)
.--++|.||||.||||+|+-++++++..+..++...+.. ..++ ..+...+..+....||-.+.-....++++
T Consensus 50 l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k-----~~dl-~~il~~l~~~~ILFIDEIHRlnk~~qe~L 121 (233)
T PF05496_consen 50 LDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK-----AGDL-AAILTNLKEGDILFIDEIHRLNKAQQEIL 121 (233)
T ss_dssp --EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S-----CHHH-HHHHHT--TT-EEEECTCCC--HHHHHHH
T ss_pred cceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhh-----HHHH-HHHHHhcCCCcEEEEechhhccHHHHHHH
Confidence 346899999999999999999999997776666543321 1112 22334567777888999876655555544
No 218
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.10 E-value=0.0048 Score=68.21 Aligned_cols=41 Identities=34% Similarity=0.494 Sum_probs=33.2
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchhc
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTIN 57 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D~i~ 57 (611)
..+|.+|+|+|++||||||.+.+|+..+ +.....++.|.++
T Consensus 97 ~~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R 140 (429)
T TIGR01425 97 KGKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFR 140 (429)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccc
Confidence 3568999999999999999999987654 4455678888775
No 219
>smart00506 A1pp Appr-1"-p processing enzyme. Function determined by Martzen et al. Extended family detected by reciprocal PSI-BLAST searches (unpublished results, and Pehrson & Fuji).
Probab=97.09 E-value=0.00012 Score=67.03 Aligned_cols=67 Identities=6% Similarity=0.018 Sum_probs=51.0
Q ss_pred cccccccccceeecccccccccccCCCCcchhhhcccCCCCCCCccccccCccCCCCCChHHHHHHH
Q 007244 234 EKNSCLEGQEITSLLSDAAGEEVKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVI 300 (611)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~SiAfPaIStGi~gfP~~~aa~Ii 300 (611)
.++.+....|.+.|.+..+.....+.....-.+|+..+...+++|||||+|+||++|||.+++++++
T Consensus 67 ~~~~~~~Iih~~~p~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~sIa~P~igtG~~g~~~~~~~~~~ 133 (133)
T smart00506 67 GNLPAKYVIHAVGPRASGHSNEGFELLENAYRNCLELAIELGITSVAIPLIGTGIYGVPKDRSAQAL 133 (133)
T ss_pred CCCCCCEEEEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHcCCCEEEECCccCCCCCCCHHHHHhhC
Confidence 3467888999988888752212223333344557788888999999999999999999999999874
No 220
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.09 E-value=0.0012 Score=74.14 Aligned_cols=51 Identities=20% Similarity=0.236 Sum_probs=41.9
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHH
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCL 68 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~ 68 (611)
+.|.-|+|.||||+|||.+|+.++..++.++..++...+..++.+..+..+
T Consensus 257 ~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~vGese~~l 307 (489)
T CHL00195 257 PTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIVGESESRM 307 (489)
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccccChHHHHH
Confidence 456789999999999999999999999988888887777777666654433
No 221
>KOG4238 consensus Bifunctional ATP sulfurylase/adenosine 5'-phosphosulfate kinase [Nucleotide transport and metabolism]
Probab=97.09 E-value=0.00091 Score=70.90 Aligned_cols=106 Identities=20% Similarity=0.298 Sum_probs=74.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHH---HcCCCeEEeecchhccCCCC-------cHHHHH---HHHHHHH-HCCCcEEEe
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMR---SSARPWARICQDTINKGKSG-------TKVQCL---TSASSAL-KKGKSVFLD 84 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~---~~~~~~~~Is~D~i~~~~~~-------~~~~~~---~~~~~~L-~~Gk~VIID 84 (611)
...-|+|.|++|+||||+.-+|.+ .++.+...++.|.|+.+... .+++.+ ..+.... ..|-.+|-.
T Consensus 49 rgctvw~tglsgagkttis~ale~~l~~~gipcy~ldgdnirhgl~knlgfs~edreenirriaevaklfadaglvcits 128 (627)
T KOG4238|consen 49 RGCTVWLTGLSGAGKTTISFALEEYLVSHGIPCYSLDGDNIRHGLNKNLGFSPEDREENIRRIAEVAKLFADAGLVCITS 128 (627)
T ss_pred cceeEEeeccCCCCcceeehHHHHHHHhcCCcccccCcchhhhhhhhccCCCchhHHHHHHHHHHHHHHHhcCCceeeeh
Confidence 346789999999999999887755 45678888999999865211 122222 3333333 344444443
Q ss_pred cCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHh
Q 007244 85 RCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVK 124 (611)
Q Consensus 85 ~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~ 124 (611)
-.....++|...+++ ...+.+..-|+++.|+++|..|..+
T Consensus 129 fispf~~dr~~arkihe~~~l~f~ev~v~a~l~vceqrd~k 169 (627)
T KOG4238|consen 129 FISPFAKDRENARKIHESAGLPFFEVFVDAPLNVCEQRDVK 169 (627)
T ss_pred hcChhhhhhhhhhhhhcccCCceEEEEecCchhhhhhcChH
Confidence 344555889999999 8888888999999999999998654
No 222
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.0022 Score=67.68 Aligned_cols=26 Identities=27% Similarity=0.769 Sum_probs=24.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244 20 QILVIMVGAPGSGKSTFCEHVMRSSA 45 (611)
Q Consensus 20 p~LIvLvG~PGSGKST~A~~L~~~~~ 45 (611)
.+||+|.||||.|||++|+.|++++.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLS 202 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLS 202 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhhe
Confidence 47899999999999999999999865
No 223
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.0044 Score=66.84 Aligned_cols=53 Identities=21% Similarity=0.335 Sum_probs=43.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHHHHHHH
Q 007244 21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASS 73 (611)
Q Consensus 21 ~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~~~~~~ 73 (611)
+-|+|+||||+|||-+|++++.+.+..|+-|+.-.+-..|.++.+.+...+.+
T Consensus 246 kgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltSKwRGeSEKlvRlLFe 298 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSKWRGESEKLVRLLFE 298 (491)
T ss_pred ceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhhhhccchHHHHHHHHH
Confidence 35899999999999999999999997788888878877888887766554443
No 224
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=97.06 E-value=0.0082 Score=70.72 Aligned_cols=33 Identities=21% Similarity=0.382 Sum_probs=27.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh
Q 007244 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (611)
Q Consensus 22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i 56 (611)
+|.|.|||||||||+|+.|++.++ |.+++...+
T Consensus 3 ~i~I~G~~GsGKST~ak~la~~l~--~~~~~~g~~ 35 (712)
T PRK09518 3 IVAIDGPAGVGKSSVSRALAQYLG--YAYLDTGAM 35 (712)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--CcEeecCcE
Confidence 689999999999999999999998 444654433
No 225
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=97.04 E-value=0.0021 Score=66.65 Aligned_cols=109 Identities=17% Similarity=0.217 Sum_probs=64.7
Q ss_pred cCCCcEEEEEEcCCCCcHHHHHHHHHHHcC----CC-eEEeecchhc--------------cCCCCcHH-HHHHHHHHHH
Q 007244 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA----RP-WARICQDTIN--------------KGKSGTKV-QCLTSASSAL 75 (611)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~----~~-~~~Is~D~i~--------------~~~~~~~~-~~~~~~~~~L 75 (611)
....|.+|.++|+||+||||.|+.+...+. .+ ...|..|-+- .|...+.+ ..+-.....+
T Consensus 78 ~~~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDGFhy~n~~L~~~glm~rKGfPeSyD~~~ll~fl~~v 157 (283)
T COG1072 78 NQQRPFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMDGFHYPNAVLDERGLMARKGFPESYDVAALLRFLSDV 157 (283)
T ss_pred CCCCCEEEEeccCccccHHHHHHHHHHHHhhCCCCCceEEEeccccccCHhHhhhccccccCCCCccccHHHHHHHHHHH
Confidence 456789999999999999999999876543 11 3344555441 12111211 1111222233
Q ss_pred HCC---------------------------CcEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244 76 KKG---------------------------KSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (611)
Q Consensus 76 ~~G---------------------------k~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~ 127 (611)
+.| +.+|+++-|+-. .+..|..+ ...++ -||+|++.+.+.+|...|--
T Consensus 158 K~~~~~v~aPvysh~~yD~vpd~~~v~~~pdIlI~EG~nvLq-~~~p~~~~sdffDf---SIyvDa~~~~le~wyi~Rfl 233 (283)
T COG1072 158 KAGKPDVFAPVYSHLIYDPVPDAFQVVPQPDILIVEGNNVLQ-DGEPWLFLSDFFDF---SIYVDADEELLEERYIERFL 233 (283)
T ss_pred hcCCCccccccccccccccCCCceeecCCCCEEEEechhhhc-CCCccccccccceE---EEEecCCHHHHHHHHHHHHH
Confidence 322 236777744332 22255444 33444 88999999999999999965
Q ss_pred c
Q 007244 128 H 128 (611)
Q Consensus 128 ~ 128 (611)
.
T Consensus 234 ~ 234 (283)
T COG1072 234 K 234 (283)
T ss_pred h
Confidence 3
No 226
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.0011 Score=69.25 Aligned_cols=65 Identities=17% Similarity=0.272 Sum_probs=53.8
Q ss_pred cCCCc-EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHHHHHHHHHHCCCc
Q 007244 16 KKWKQ-ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKS 80 (611)
Q Consensus 16 ~~~~p-~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L~~Gk~ 80 (611)
.+..| .-|+|-||||.|||++|++++-+.+-.|..|+.-++-..|+++.+.+...+.+..++.+.
T Consensus 161 GkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGESEkLVknLFemARe~kP 226 (439)
T KOG0739|consen 161 GKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKNLFEMARENKP 226 (439)
T ss_pred CCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhccHHHHHHHHHHHHHhcCC
Confidence 34444 578999999999999999999988877778888788888999998888777777777765
No 227
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=96.96 E-value=0.0016 Score=71.23 Aligned_cols=45 Identities=20% Similarity=0.361 Sum_probs=35.1
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCC
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG 62 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~ 62 (611)
..|.-|+|.||||+|||++|+.++..++..+..++...+...+.+
T Consensus 163 ~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~~~g 207 (389)
T PRK03992 163 EPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQKFIG 207 (389)
T ss_pred CCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHhhcc
Confidence 456779999999999999999999999877777765555433333
No 228
>PRK10867 signal recognition particle protein; Provisional
Probab=96.96 E-value=0.0076 Score=66.87 Aligned_cols=41 Identities=20% Similarity=0.309 Sum_probs=32.3
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHHc----CCCeEEeecchhc
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRSS----ARPWARICQDTIN 57 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~----~~~~~~Is~D~i~ 57 (611)
.++|.+|+|+|++||||||++.+|+..+ +.....|+.|.++
T Consensus 97 ~~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R 141 (433)
T PRK10867 97 AKPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYR 141 (433)
T ss_pred CCCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccc
Confidence 4568999999999999999888876543 4456678888765
No 229
>PRK14974 cell division protein FtsY; Provisional
Probab=96.95 E-value=0.0063 Score=65.38 Aligned_cols=41 Identities=24% Similarity=0.315 Sum_probs=30.6
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchhc
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTIN 57 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D~i~ 57 (611)
..+|.+|+|+|+||+||||.+.+++..+ +.....++.|.++
T Consensus 137 ~~~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R 180 (336)
T PRK14974 137 KGKPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFR 180 (336)
T ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCc
Confidence 3468999999999999999888876543 3334456777664
No 230
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.94 E-value=0.0046 Score=55.88 Aligned_cols=95 Identities=21% Similarity=0.280 Sum_probs=51.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHc--------CCCeEEeecch------h--------ccC-CC-CcHHHHHHHHHHH
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSS--------ARPWARICQDT------I--------NKG-KS-GTKVQCLTSASSA 74 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~--------~~~~~~Is~D~------i--------~~~-~~-~~~~~~~~~~~~~ 74 (611)
.+.++++.|+||+|||++++.+.+.+ ......++... + ... .. .....+.+.+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 45689999999999999999999876 33333443211 1 111 11 2345566777788
Q ss_pred HHCCCc--EEEecCCC--CHHHHHHHHHhCCCCCeEEEEEEeCC
Q 007244 75 LKKGKS--VFLDRCNL--EREQRTDFVKLGGPEVDVHAVVLDLP 114 (611)
Q Consensus 75 L~~Gk~--VIID~tnl--~~~~R~~~~~l~~~~~~v~vV~Ld~p 114 (611)
+..... +|||.... ....-..+..+.. ...+.+|++-.|
T Consensus 83 l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~-~~~~~vvl~G~~ 125 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLFSDEFLEFLRSLLN-ESNIKVVLVGTP 125 (131)
T ss_dssp HHHCTEEEEEEETTHHHHTHHHHHHHHHHTC-SCBEEEEEEESS
T ss_pred HHhcCCeEEEEeChHhcCCHHHHHHHHHHHh-CCCCeEEEEECh
Confidence 877764 88898443 2223333334422 334455554443
No 231
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.94 E-value=0.0062 Score=64.11 Aligned_cols=105 Identities=10% Similarity=0.085 Sum_probs=57.9
Q ss_pred cCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHHHHHHHHH------HCCCcEEEecCCCC
Q 007244 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSAL------KKGKSVFLDRCNLE 89 (611)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L------~~Gk~VIID~tnl~ 89 (611)
....|.++++.|+||+||||+++.+++..+..+..++... . . .......+...+ ...+.+|||....-
T Consensus 39 ~~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~-~--~---~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l 112 (316)
T PHA02544 39 KGRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD-C--R---IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRL 112 (316)
T ss_pred cCCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc-c--c---HHHHHHHHHHHHHhhcccCCCeEEEEECcccc
Confidence 3456789999999999999999999988775555555433 1 1 111111121111 24466899985422
Q ss_pred --HHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcc
Q 007244 90 --REQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRI 126 (611)
Q Consensus 90 --~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~ 126 (611)
......+..+ ........+|+..-....+...+..|-
T Consensus 113 ~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~ 152 (316)
T PHA02544 113 GLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRC 152 (316)
T ss_pred cCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhc
Confidence 2333444444 433333334443333344555555554
No 232
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.93 E-value=0.016 Score=55.61 Aligned_cols=35 Identities=23% Similarity=0.371 Sum_probs=27.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchh
Q 007244 22 LVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTI 56 (611)
Q Consensus 22 LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D~i 56 (611)
+++++|+|||||||++..++..+ +.....++.|.+
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~ 39 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTY 39 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Confidence 68999999999999999987654 444566777755
No 233
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.93 E-value=0.0077 Score=66.73 Aligned_cols=41 Identities=27% Similarity=0.381 Sum_probs=32.6
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHHc----CCCeEEeecchhc
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRSS----ARPWARICQDTIN 57 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~----~~~~~~Is~D~i~ 57 (611)
..+|.+++++|++||||||++.+++..+ +.....++.|.++
T Consensus 96 ~~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R 140 (428)
T TIGR00959 96 KKPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYR 140 (428)
T ss_pred CCCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccc
Confidence 3568999999999999999988887653 3456678888765
No 234
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.90 E-value=0.0087 Score=61.69 Aligned_cols=27 Identities=26% Similarity=0.416 Sum_probs=22.5
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSS 44 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~ 44 (611)
+...-++|.||||+||||+|+.+++.+
T Consensus 40 ~~~~~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 40 KQVLHMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred CCcceEEEEcCCCCCHHHHHHHHHHHH
Confidence 334568899999999999999998764
No 235
>KOG1384 consensus tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=96.90 E-value=0.0071 Score=64.01 Aligned_cols=107 Identities=21% Similarity=0.252 Sum_probs=71.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhc--cC----------------------C-----CCcHHH---
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN--KG----------------------K-----SGTKVQ--- 66 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~--~~----------------------~-----~~~~~~--- 66 (611)
+-++|+++|+.|||||-++-.|+.+++ .-+|+.|.+. .| . -.+..+
T Consensus 6 k~KVvvI~G~TGsGKSrLaVdLA~rf~--~EIINsDkmQvYkGldivTnK~t~~e~~gVPHHLlg~l~~~~e~t~~~F~~ 83 (348)
T KOG1384|consen 6 KDKVVVIMGATGAGKSRLAVDLATRFP--GEIINSDKMQVYKGLDIVTNKITLQERKGVPHHLLGHLHPEAEYTAGEFED 83 (348)
T ss_pred CceEEEEecCCCCChhhhHHHHHHhCC--ceeecccceeeecCcccccccCChhhcCCCChHHhCcCChHhhccHHHHHH
Confidence 568999999999999999999999988 4457766552 10 0 001112
Q ss_pred -HHHHHHHHHHCCCc-EEEecCCCCHHHHHHH-H--H----------h-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244 67 -CLTSASSALKKGKS-VFLDRCNLEREQRTDF-V--K----------L-GGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (611)
Q Consensus 67 -~~~~~~~~L~~Gk~-VIID~tnl~~~~R~~~-~--~----------l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~ 127 (611)
....+.+..++|+. +|+=++|++-..--.- . . + .+..|...+++++++..++.+|+-+|-.
T Consensus 84 ~a~~aie~I~~rgk~PIv~GGs~~yi~al~~~~~d~~~dp~~~~~g~~pS~lryd~c~lWlda~~~VL~~~l~~RVD 160 (348)
T KOG1384|consen 84 DASRAIEEIHSRGKLPIVVGGSNSYLQALLSKRFDPKIDPFSSNTGSIPSELRYDCCFLWLDADQAVLFERLDKRVD 160 (348)
T ss_pred HHHHHHHHHHhCCCCCEEeCCchhhHHHHhhcCCCcccCcccccCCCCCcccccceEEEEEecchHHHHHHHHHHHH
Confidence 23566777788875 6666677654221110 0 0 1 1223567899999999999999999976
No 236
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.85 E-value=0.0096 Score=62.15 Aligned_cols=41 Identities=22% Similarity=0.304 Sum_probs=31.4
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchhc
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTIN 57 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D~i~ 57 (611)
..++.+|+|+|++|+||||.+.+|+..+ +.....++.|.++
T Consensus 69 ~~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r 112 (272)
T TIGR00064 69 ENKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFR 112 (272)
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCC
Confidence 4557899999999999999999987654 3345567777653
No 237
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=96.85 E-value=0.0033 Score=68.09 Aligned_cols=80 Identities=19% Similarity=0.326 Sum_probs=49.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHHHHHHHHHHCCCc--EEEecCC-CCHHHHHHHH
Q 007244 21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKS--VFLDRCN-LEREQRTDFV 97 (611)
Q Consensus 21 ~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L~~Gk~--VIID~tn-l~~~~R~~~~ 97 (611)
.=.+|.||||+||||+|+.++..++..|..++.-.- + ...-.++++.+++.+..|+. .+||-.+ +++.+..-++
T Consensus 49 ~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~--g-vkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lL 125 (436)
T COG2256 49 HSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTS--G-VKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQDALL 125 (436)
T ss_pred ceeEEECCCCCCHHHHHHHHHHhhCCceEEeccccc--c-HHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhhhhhh
Confidence 345799999999999999999999877766664111 0 01122345666566665654 5677766 3444444443
Q ss_pred HhCCCC
Q 007244 98 KLGGPE 103 (611)
Q Consensus 98 ~l~~~~ 103 (611)
-.-+.|
T Consensus 126 p~vE~G 131 (436)
T COG2256 126 PHVENG 131 (436)
T ss_pred hhhcCC
Confidence 333333
No 238
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=96.84 E-value=0.0025 Score=70.00 Aligned_cols=36 Identities=22% Similarity=0.423 Sum_probs=30.6
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeec
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ 53 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~ 53 (611)
..|.-|+|.||||+|||++|+.++...+..+..+..
T Consensus 177 ~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~ 212 (398)
T PTZ00454 177 DPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVG 212 (398)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEeh
Confidence 457789999999999999999999998877766654
No 239
>PRK06620 hypothetical protein; Validated
Probab=96.83 E-value=0.0084 Score=60.31 Aligned_cols=25 Identities=20% Similarity=0.287 Sum_probs=21.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244 21 ILVIMVGAPGSGKSTFCEHVMRSSA 45 (611)
Q Consensus 21 ~LIvLvG~PGSGKST~A~~L~~~~~ 45 (611)
..++|.||||||||++++.+.+..+
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~ 69 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN 69 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC
Confidence 4589999999999999999877665
No 240
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.83 E-value=0.0081 Score=66.73 Aligned_cols=40 Identities=28% Similarity=0.354 Sum_probs=31.9
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchhc
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTIN 57 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D~i~ 57 (611)
..|.+|+|+|++|+||||++.+++..+ +.....++.|.++
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R 135 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYR 135 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCC
Confidence 568999999999999999999987654 3345567777764
No 241
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.82 E-value=0.0017 Score=73.17 Aligned_cols=53 Identities=15% Similarity=0.289 Sum_probs=42.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHHHHH
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSA 71 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~~~~ 71 (611)
.|.=|+|+||||||||-+|++++.+.+..|..|-...+.+.+.++.+.....+
T Consensus 544 ~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYVGESErAVR~v 596 (802)
T KOG0733|consen 544 APSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYVGESERAVRQV 596 (802)
T ss_pred CCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHhhhHHHHHHHH
Confidence 47889999999999999999999999988877877777777777665544333
No 242
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.81 E-value=0.015 Score=62.12 Aligned_cols=40 Identities=23% Similarity=0.316 Sum_probs=31.2
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEeecchhc
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTIN 57 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~---~~~~~Is~D~i~ 57 (611)
.+|.+|+|+||+||||||++.+|+..+. .....++.|.++
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r 154 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFR 154 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccc
Confidence 4688999999999999999999876543 345566777654
No 243
>PF13173 AAA_14: AAA domain
Probab=96.80 E-value=0.005 Score=56.38 Aligned_cols=78 Identities=18% Similarity=0.211 Sum_probs=46.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcC--CCeEEeecchhccCCCCcHHHHHHHHHHHHH-CCCcEEEecCCCCHHHHHHHH
Q 007244 21 ILVIMVGAPGSGKSTFCEHVMRSSA--RPWARICQDTINKGKSGTKVQCLTSASSALK-KGKSVFLDRCNLEREQRTDFV 97 (611)
Q Consensus 21 ~LIvLvG~PGSGKST~A~~L~~~~~--~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L~-~Gk~VIID~tnl~~~~R~~~~ 97 (611)
.+++|.||.|+||||+++++++.+. ..+..++.|........... +.+.+.+... ....++||.....+.....+.
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~iDEiq~~~~~~~~lk 81 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD-LLEYFLELIKPGKKYIFIDEIQYLPDWEDALK 81 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh-hHHHHHHhhccCCcEEEEehhhhhccHHHHHH
Confidence 5799999999999999999998765 34555666555432111111 2233333332 345689999665554333333
Q ss_pred Hh
Q 007244 98 KL 99 (611)
Q Consensus 98 ~l 99 (611)
.+
T Consensus 82 ~l 83 (128)
T PF13173_consen 82 FL 83 (128)
T ss_pred HH
Confidence 33
No 244
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.80 E-value=0.01 Score=57.13 Aligned_cols=27 Identities=22% Similarity=0.475 Sum_probs=22.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSSA 45 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~~ 45 (611)
++.=|+++|+||+||||++.++++.+.
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~ 30 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLR 30 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHH
Confidence 455699999999999999999987643
No 245
>PHA03132 thymidine kinase; Provisional
Probab=96.78 E-value=0.019 Score=65.55 Aligned_cols=26 Identities=23% Similarity=0.399 Sum_probs=23.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244 20 QILVIMVGAPGSGKSTFCEHVMRSSA 45 (611)
Q Consensus 20 p~LIvLvG~PGSGKST~A~~L~~~~~ 45 (611)
..+|+|=|+-||||||+++.|.+.++
T Consensus 257 ~~fIv~EGidGsGKTTlik~L~e~lg 282 (580)
T PHA03132 257 ACFLFLEGVMGVGKTTLLNHMRGILG 282 (580)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 67999999999999999999998874
No 246
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.78 E-value=0.0075 Score=61.36 Aligned_cols=24 Identities=13% Similarity=0.184 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHc
Q 007244 21 ILVIMVGAPGSGKSTFCEHVMRSS 44 (611)
Q Consensus 21 ~LIvLvG~PGSGKST~A~~L~~~~ 44 (611)
..++|.||||+|||+++..+....
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~ 69 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAEL 69 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999887653
No 247
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=96.78 E-value=0.0031 Score=70.07 Aligned_cols=39 Identities=23% Similarity=0.441 Sum_probs=31.6
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i 56 (611)
..|.-++|.||||+|||++|+.++..++..+..+....+
T Consensus 215 ~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL 253 (438)
T PTZ00361 215 KPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSEL 253 (438)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchh
Confidence 456678899999999999999999998877766654444
No 248
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.77 E-value=0.0026 Score=71.82 Aligned_cols=69 Identities=23% Similarity=0.357 Sum_probs=53.5
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHHHHHHHHHHCCC--cEEEec
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGK--SVFLDR 85 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L~~Gk--~VIID~ 85 (611)
-.+|.=|+|-||||||||.||+.++.+++.++..|+.-.+-.|..++.++-+..+.+.....- .++||.
T Consensus 220 v~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSGESEkkiRelF~~A~~~aPcivFiDe 290 (802)
T KOG0733|consen 220 VRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSGESEKKIRELFDQAKSNAPCIVFIDE 290 (802)
T ss_pred CCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCcccHHHHHHHHHHHhccCCeEEEeec
Confidence 456778999999999999999999999999999999888888888887766555544444332 245554
No 249
>KOG0234 consensus Fructose-6-phosphate 2-kinase/fructose-2,6-biphosphatase [Carbohydrate transport and metabolism]
Probab=96.77 E-value=0.018 Score=63.16 Aligned_cols=132 Identities=15% Similarity=0.189 Sum_probs=85.4
Q ss_pred cCCCcEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEeecchhcc---------CCC--------CcHHHH----HHHH
Q 007244 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINK---------GKS--------GTKVQC----LTSA 71 (611)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~---~~~~~Is~D~i~~---------~~~--------~~~~~~----~~~~ 71 (611)
...-+.+|+|+|+|++|||.++.++-+-+. .....++.-.+++ ..+ .-+.++ ...+
T Consensus 24 ~~~~~~~ivmvglpA~gKt~is~kl~ryl~w~~~~tk~fn~g~yrr~~~~~~~s~~ff~p~n~~~~~lr~~~a~~~l~D~ 103 (438)
T KOG0234|consen 24 FMGSKLVIVMVGLPARGKTYISSKLTRYLNWLGVNTKVFNVGEYRREAVKKVDSEPFFLPDNAEASKLRKQLALLALNDL 103 (438)
T ss_pred ccCCceEEEEecCCccCcchhhhhHHHHHHhhccccccccHHHHHHHHhcccccccccccCChhhhhhhHHHHHHHhhhH
Confidence 456689999999999999999999877654 1111122111211 011 011122 2333
Q ss_pred HHHHH--CCCcEEEecCCCCHHHHHHHHHh-C-CCCCeEEEEEEeCCHHHHHHHHHh-cccccCCCCCCCHHHHHHHHHh
Q 007244 72 SSALK--KGKSVFLDRCNLEREQRTDFVKL-G-GPEVDVHAVVLDLPAKLCISRSVK-RIEHEGNLQGGKAAAVVNRMLQ 146 (611)
Q Consensus 72 ~~~L~--~Gk~VIID~tnl~~~~R~~~~~l-~-~~~~~v~vV~Ld~p~e~~~~Rl~~-R~~~~g~~~~~vpeevi~rm~~ 146 (611)
...+. .|..+|.|+||.++..|..+..+ + ..+..+.+|---+....++.+++. +....+...+-..+++++-+.+
T Consensus 104 ~~~l~~~~g~vai~Datnttr~rrk~i~~~~~~~~~~kv~FiEs~c~D~~ii~~NI~~~~~~spdy~~~~~e~a~~dfl~ 183 (438)
T KOG0234|consen 104 LHFLIKENGQVAIFDATNTTRERRKRIIDFAEREAGFKVFFIESVCNDPNLINNNIREVKHVSPDYKGKDQEEALKDFLK 183 (438)
T ss_pred HHHhhccCCceEEecCCCCCHHHHHHHHHHHhhcCCceEEEEEeecCCchhHHhhhhhhhhcCCCcCCCCHHHHHHHHHH
Confidence 34443 56789999999999999999999 6 788888888877888888888776 5444333444456666665554
Q ss_pred h
Q 007244 147 K 147 (611)
Q Consensus 147 ~ 147 (611)
+
T Consensus 184 r 184 (438)
T KOG0234|consen 184 R 184 (438)
T ss_pred H
Confidence 4
No 250
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=96.77 E-value=0.0026 Score=68.79 Aligned_cols=35 Identities=23% Similarity=0.476 Sum_probs=29.4
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeec
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ 53 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~ 53 (611)
.|.-++|.||||+|||++|+.++..++..+..+..
T Consensus 155 ~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~ 189 (364)
T TIGR01242 155 PPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVG 189 (364)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhCCCCEEecch
Confidence 45669999999999999999999998877765543
No 251
>PLN02840 tRNA dimethylallyltransferase
Probab=96.76 E-value=0.0049 Score=67.86 Aligned_cols=40 Identities=23% Similarity=0.392 Sum_probs=31.8
Q ss_pred cccCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecch
Q 007244 14 EEKKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDT 55 (611)
Q Consensus 14 ~~~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~ 55 (611)
..+..++.+|+|+||+||||||++..|++.++..+ |+.|.
T Consensus 15 ~~~~~~~~vi~I~GptgsGKTtla~~La~~~~~~i--is~Ds 54 (421)
T PLN02840 15 ASKTKKEKVIVISGPTGAGKSRLALELAKRLNGEI--ISADS 54 (421)
T ss_pred cccccCCeEEEEECCCCCCHHHHHHHHHHHCCCCe--Eeccc
Confidence 34556667999999999999999999999988544 55444
No 252
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.71 E-value=0.0099 Score=66.57 Aligned_cols=111 Identities=14% Similarity=0.149 Sum_probs=62.7
Q ss_pred cCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCe---EEe---e-----------cchhc-cC-CCCcHHH---HHHHHHH
Q 007244 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPW---ARI---C-----------QDTIN-KG-KSGTKVQ---CLTSASS 73 (611)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~---~~I---s-----------~D~i~-~~-~~~~~~~---~~~~~~~ 73 (611)
....+..++|+||||+||||+|+.+++.++... ... + .|.+. +. .....+. +.+.+..
T Consensus 36 ~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~ 115 (484)
T PRK14956 36 SGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSDVLEIDAASNRGIENIRELRDNVKF 115 (484)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCccceeechhhcccHHHHHHHHHHHHh
Confidence 344577899999999999999999999876311 000 0 01111 00 0000111 1122221
Q ss_pred HHHCC--CcEEEecCC-CCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcc
Q 007244 74 ALKKG--KSVFLDRCN-LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRI 126 (611)
Q Consensus 74 ~L~~G--k~VIID~tn-l~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~ 126 (611)
.-..| +.+|||... ++......+++. .+....+.+|+.-...+.+..++..|-
T Consensus 116 ~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SRC 172 (484)
T PRK14956 116 APMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRC 172 (484)
T ss_pred hhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhhh
Confidence 11223 468999855 444555666666 666666666666666666667777774
No 253
>CHL00181 cbbX CbbX; Provisional
Probab=96.69 E-value=0.019 Score=60.41 Aligned_cols=67 Identities=16% Similarity=0.251 Sum_probs=40.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcC-------CCeEEeecchhccCCCCcHHH-HHHHHHHHHHCCCcEEEecCC
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSSA-------RPWARICQDTINKGKSGTKVQ-CLTSASSALKKGKSVFLDRCN 87 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~~-------~~~~~Is~D~i~~~~~~~~~~-~~~~~~~~L~~Gk~VIID~tn 87 (611)
.+.-++|.|+||+||||+|+.+++.+. .++..++.+.+.....+.... ....+.+ ..|..++||...
T Consensus 58 ~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~l~~--a~ggVLfIDE~~ 132 (287)
T CHL00181 58 PGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLVGQYIGHTAPKTKEVLKK--AMGGVLFIDEAY 132 (287)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHHHHHhccchHHHHHHHHH--ccCCEEEEEccc
Confidence 345589999999999999999977542 235566666554333332211 1122222 245677888743
No 254
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.62 E-value=0.002 Score=59.35 Aligned_cols=30 Identities=40% Similarity=0.719 Sum_probs=26.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcCCCeEEee
Q 007244 23 VIMVGAPGSGKSTFCEHVMRSSARPWARIC 52 (611)
Q Consensus 23 IvLvG~PGSGKST~A~~L~~~~~~~~~~Is 52 (611)
|+|+|+||+|||++++.+++.++.++..+.
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~~~~~i~ 31 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGRPVIRIN 31 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTCEEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhhcceEEEE
Confidence 789999999999999999999986665554
No 255
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.62 E-value=0.02 Score=63.26 Aligned_cols=40 Identities=23% Similarity=0.310 Sum_probs=31.0
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHc----CCCeEEeecchhc
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSS----ARPWARICQDTIN 57 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~----~~~~~~Is~D~i~ 57 (611)
.++.+++++||+||||||++.+|+..+ +.....++.|.++
T Consensus 221 ~~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R 264 (432)
T PRK12724 221 NQRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYR 264 (432)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchh
Confidence 357899999999999999999998654 2334567777764
No 256
>PRK12377 putative replication protein; Provisional
Probab=96.60 E-value=0.0065 Score=62.63 Aligned_cols=104 Identities=12% Similarity=0.084 Sum_probs=60.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEeecchhccCCCCcHH--HHHHHHHHHHHCCCcEEEecCC---CCHH
Q 007244 20 QILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINKGKSGTKV--QCLTSASSALKKGKSVFLDRCN---LERE 91 (611)
Q Consensus 20 p~LIvLvG~PGSGKST~A~~L~~~~~---~~~~~Is~D~i~~~~~~~~~--~~~~~~~~~L~~Gk~VIID~tn---l~~~ 91 (611)
..-++|.|+||+|||++|..++..+. .....++..++.......+. .....+.+.+..-..+|||... .+..
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l~~~dLLiIDDlg~~~~s~~ 180 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQELCKVDLLVLDEIGIQRETKN 180 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCCCCCHH
Confidence 35789999999999999999887653 33334443333211000000 0113445666777789999963 4445
Q ss_pred HHHHHHHh--CCCC-CeEEEEEEeCCHHHHHHHHH
Q 007244 92 QRTDFVKL--GGPE-VDVHAVVLDLPAKLCISRSV 123 (611)
Q Consensus 92 ~R~~~~~l--~~~~-~~v~vV~Ld~p~e~~~~Rl~ 123 (611)
....+..+ ..+. ....+|--..+.+.+.+++.
T Consensus 181 ~~~~l~~ii~~R~~~~~ptiitSNl~~~~l~~~~~ 215 (248)
T PRK12377 181 EQVVLNQIIDRRTASMRSVGMLTNLNHEAMSTLLG 215 (248)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHhh
Confidence 55555555 3222 23446666777777765443
No 257
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.60 E-value=0.014 Score=67.35 Aligned_cols=37 Identities=22% Similarity=0.444 Sum_probs=31.1
Q ss_pred cCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEee
Q 007244 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARIC 52 (611)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is 52 (611)
..+..++.+|+||||-||||+|.-++++.|...+.|+
T Consensus 322 ~RP~kKilLL~GppGlGKTTLAHViAkqaGYsVvEIN 358 (877)
T KOG1969|consen 322 KRPPKKILLLCGPPGLGKTTLAHVIAKQAGYSVVEIN 358 (877)
T ss_pred CCCccceEEeecCCCCChhHHHHHHHHhcCceEEEec
Confidence 4566689999999999999999999999995555555
No 258
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.60 E-value=0.014 Score=63.26 Aligned_cols=111 Identities=14% Similarity=0.159 Sum_probs=61.6
Q ss_pred cCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEe---------e--------cchhc-cC-CCCcHHHHHHHHHHHHH
Q 007244 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARI---------C--------QDTIN-KG-KSGTKVQCLTSASSALK 76 (611)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~I---------s--------~D~i~-~~-~~~~~~~~~~~~~~~L~ 76 (611)
....|..++|.||||+||||+|+.+++.+....... + .|.+. +. .....++ +..+.+.+.
T Consensus 34 ~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~~~~~~~~~v~~-ir~i~~~~~ 112 (363)
T PRK14961 34 LGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIEIDAASRTKVEE-MREILDNIY 112 (363)
T ss_pred cCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEEecccccCCHHH-HHHHHHHHh
Confidence 345678899999999999999999999875211000 0 01110 00 0011122 222222222
Q ss_pred ------CCCcEEEecCCCC-HHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244 77 ------KGKSVFLDRCNLE-REQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (611)
Q Consensus 77 ------~Gk~VIID~tnl~-~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~ 127 (611)
..+.+|||....- ......+++. .+.+..+.+|+.....+.+..++..|-.
T Consensus 113 ~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~SRc~ 171 (363)
T PRK14961 113 YSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILSRCL 171 (363)
T ss_pred cCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHHhhce
Confidence 1246899885433 2334456666 5555555566666666667777777754
No 259
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.59 E-value=0.0048 Score=69.37 Aligned_cols=60 Identities=15% Similarity=0.195 Sum_probs=47.8
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHHHHHHHHHH
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALK 76 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L~ 76 (611)
-..|..++|.||||+|||++|++++...+.++..+..-.+-..|.++.+..+..+.+..+
T Consensus 273 ~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~vGesek~ir~~F~~A~ 332 (494)
T COG0464 273 LRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWVGESEKNIRELFEKAR 332 (494)
T ss_pred CCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhccccchHHHHHHHHHHHHH
Confidence 456779999999999999999999998887787777667778888887766655544444
No 260
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.59 E-value=0.008 Score=67.49 Aligned_cols=30 Identities=27% Similarity=0.338 Sum_probs=25.9
Q ss_pred cCCCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (611)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~ 45 (611)
.+..|..++|.||||+||||+|+.+++.++
T Consensus 32 ~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~ 61 (472)
T PRK14962 32 KNSISHAYIFAGPRGTGKTTVARILAKSLN 61 (472)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 345567899999999999999999998865
No 261
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=96.54 E-value=0.0043 Score=68.23 Aligned_cols=43 Identities=19% Similarity=0.482 Sum_probs=36.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhcc-CCCC
Q 007244 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK-GKSG 62 (611)
Q Consensus 20 p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~-~~~~ 62 (611)
|.-|+|+||||+||||+|+.|++.++.++.+++...+.. +|.+
T Consensus 50 ~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG 93 (443)
T PRK05201 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVG 93 (443)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCccc
Confidence 567899999999999999999999998888887765653 5555
No 262
>PRK13342 recombination factor protein RarA; Reviewed
Probab=96.51 E-value=0.014 Score=64.31 Aligned_cols=77 Identities=17% Similarity=0.338 Sum_probs=45.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHHHHHHHHHH--CCCcEEEecCC-CCHHHHHHH
Q 007244 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALK--KGKSVFLDRCN-LEREQRTDF 96 (611)
Q Consensus 20 p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L~--~Gk~VIID~tn-l~~~~R~~~ 96 (611)
+.-++|.||||+||||+|+.+++..+..+..++.-... .......++.+..... .+..++||... ++..+...+
T Consensus 36 ~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~~---~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~L 112 (413)
T PRK13342 36 LSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTSG---VKDLREVIEEARQRRSAGRRTILFIDEIHRFNKAQQDAL 112 (413)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccc---HHHHHHHHHHHHHhhhcCCceEEEEechhhhCHHHHHHH
Confidence 33577799999999999999999888777666542211 0011122333333233 34567888754 344455555
Q ss_pred HHh
Q 007244 97 VKL 99 (611)
Q Consensus 97 ~~l 99 (611)
+..
T Consensus 113 L~~ 115 (413)
T PRK13342 113 LPH 115 (413)
T ss_pred HHH
Confidence 555
No 263
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.50 E-value=0.0061 Score=72.00 Aligned_cols=51 Identities=20% Similarity=0.302 Sum_probs=39.6
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHH
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCL 68 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~ 68 (611)
..|.-|+|.||||+|||++|+.++...+..+..+....+...+.+..+..+
T Consensus 485 ~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGese~~i 535 (733)
T TIGR01243 485 RPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAI 535 (733)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcHHHHH
Confidence 345668999999999999999999999988877776666655666554433
No 264
>PLN02748 tRNA dimethylallyltransferase
Probab=96.48 E-value=0.0056 Score=68.41 Aligned_cols=38 Identities=29% Similarity=0.382 Sum_probs=32.2
Q ss_pred cCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecch
Q 007244 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDT 55 (611)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~ 55 (611)
..+++.+|+|+||+||||||+|..|++.++ ..+|+.|.
T Consensus 18 ~~~~~~~i~i~GptgsGKs~la~~la~~~~--~eii~~Ds 55 (468)
T PLN02748 18 QKGKAKVVVVMGPTGSGKSKLAVDLASHFP--VEIINADS 55 (468)
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHhcC--eeEEcCch
Confidence 456677999999999999999999999988 45678774
No 265
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.47 E-value=0.0055 Score=59.47 Aligned_cols=31 Identities=29% Similarity=0.525 Sum_probs=24.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEee
Q 007244 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARIC 52 (611)
Q Consensus 22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is 52 (611)
+++++|+||||||+||.+++...+.+...+.
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~~~~~~~y~a 31 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAELGGPVTYIA 31 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCeEEEE
Confidence 4789999999999999999887664444453
No 266
>COG5324 Uncharacterized conserved protein [Function unknown]
Probab=96.46 E-value=0.019 Score=63.25 Aligned_cols=144 Identities=21% Similarity=0.320 Sum_probs=89.8
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHHHHHHHHHHCCCc-EEEecCCCCHHHHHHH
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKS-VFLDRCNLEREQRTDF 96 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L~~Gk~-VIID~tnl~~~~R~~~ 96 (611)
...+|++-+..-||||||.|+-|.+-++ |.+|-.|.+ .|.-++. .+.+.+....+.|.. |++|..|.....|..+
T Consensus 372 ~e~tll~pia~igcgktt~ak~l~~lf~--w~~vqnd~l-sgk~~~k-~~~kai~~~~r~~~~~v~~drnnh~~~~r~~l 447 (758)
T COG5324 372 KEFTLLVPIATIGCGKTTVAKILEKLFG--WPVVQNDNL-SGKGGPK-RFAKAIIEEFRNGHSVVFADRNNHISNMRSTL 447 (758)
T ss_pred ceeEEEEEEEEeccCcccHHHHHHHHcC--CcccccCCC-CCCCchh-HHHHHHHHHhccCceEEEEcccchhhhhhhhh
Confidence 4457999999999999999999999987 777888888 4443333 334566666677754 6778877666777655
Q ss_pred HHh-CCCCCeEEEEEEe---CC--HHHHHHHHHhcccccCCCC---C-CCHHHHHHHHHhhccCCCc----cCCccEEEE
Q 007244 97 VKL-GGPEVDVHAVVLD---LP--AKLCISRSVKRIEHEGNLQ---G-GKAAAVVNRMLQKKELPKL----SEGFSRITL 162 (611)
Q Consensus 97 ~~l-~~~~~~v~vV~Ld---~p--~e~~~~Rl~~R~~~~g~~~---~-~vpeevi~rm~~~~e~P~~----~EgFd~V~v 162 (611)
..= -.....+.+|-++ +| .+....|..+|+.+..... + +..-.+++-+++++.+-.. ...||.++.
T Consensus 448 q~d~l~~~~~vr~v~~p~~~~~ev~e~~~~rvlqrg~~hqsik~~eg~~kv~~imn~f~k~ykp~~~~~~~d~~~d~~ie 527 (758)
T COG5324 448 QTDILALIDGVRFVALPFKHTPEVPEFVQNRVLQRGDRHQSIKVSEGVDKVKAIMNTFYKQYKPFDAGNKHDANYDDIIE 527 (758)
T ss_pred hcceEEEecCcEEEecccccCcccHHHHHHHHHhccCCccceeeccchHHHHHHHHHHHHhcCCCCCCCCccccccceee
Confidence 321 1111122333333 22 3678899999987543321 1 1223455666676654333 345777877
Q ss_pred cCC
Q 007244 163 CQN 165 (611)
Q Consensus 163 v~~ 165 (611)
++.
T Consensus 528 ld~ 530 (758)
T COG5324 528 LDP 530 (758)
T ss_pred ccc
Confidence 763
No 267
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.45 E-value=0.0093 Score=61.69 Aligned_cols=31 Identities=39% Similarity=0.552 Sum_probs=27.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEee
Q 007244 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARIC 52 (611)
Q Consensus 22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is 52 (611)
-|+|.|+||+|||++|+.+++.++.++..++
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~ 53 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVARKRDRPVMLIN 53 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEEEe
Confidence 4678999999999999999998888887774
No 268
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=96.44 E-value=0.0058 Score=67.23 Aligned_cols=45 Identities=18% Similarity=0.421 Sum_probs=35.9
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhc-cCCCC
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN-KGKSG 62 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~-~~~~~ 62 (611)
..|.-|+|+||||+||||+|+.+++.++.+|..++.-.+. .++.+
T Consensus 45 ~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG 90 (441)
T TIGR00390 45 VTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVG 90 (441)
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCccc
Confidence 3457799999999999999999999999888777754443 35555
No 269
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.44 E-value=0.0032 Score=67.97 Aligned_cols=29 Identities=24% Similarity=0.472 Sum_probs=25.9
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~ 45 (611)
..+..+++|+|||||||||+|+.|++.++
T Consensus 75 ~~~r~il~L~GPPGsGKStla~~La~~l~ 103 (361)
T smart00763 75 EERKQILYLLGPVGGGKSSLVECLKRGLE 103 (361)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 44578999999999999999999998876
No 270
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.42 E-value=0.025 Score=62.04 Aligned_cols=41 Identities=27% Similarity=0.377 Sum_probs=32.8
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchhc
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTIN 57 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D~i~ 57 (611)
..+|.+|+|+|+-||||||.+-+|+..+ +...-.++.|.+|
T Consensus 97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~R 140 (451)
T COG0541 97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYR 140 (451)
T ss_pred CCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCC
Confidence 5679999999999999999988877543 4445567888875
No 271
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.42 E-value=0.018 Score=62.11 Aligned_cols=101 Identities=22% Similarity=0.262 Sum_probs=64.8
Q ss_pred ccCCCcEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEeecchhccCCCC---------------c------HHHHHHH
Q 007244 15 EKKWKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINKGKSG---------------T------KVQCLTS 70 (611)
Q Consensus 15 ~~~~~p~LIvLvG~PGSGKST~A~~L~~~~~---~~~~~Is~D~i~~~~~~---------------~------~~~~~~~ 70 (611)
....+|.+|+++|+.||||||.+-+++-.+. .....++.|.+|-+.+- . ..-..+-
T Consensus 96 ~~K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~eg 175 (483)
T KOG0780|consen 96 PKKGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEG 175 (483)
T ss_pred cccCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHH
Confidence 3577899999999999999999999886554 34567889998743211 1 1112255
Q ss_pred HHHHHHCCCcEEEecCCCCHHHH----HHHHHh-CCCCCeEEEEEEeCCH
Q 007244 71 ASSALKKGKSVFLDRCNLEREQR----TDFVKL-GGPEVDVHAVVLDLPA 115 (611)
Q Consensus 71 ~~~~L~~Gk~VIID~tnl~~~~R----~~~~~l-~~~~~~v~vV~Ld~p~ 115 (611)
+.++-+++..+||=.|.-...+- .+++++ +.....-+++++|.+.
T Consensus 176 v~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasi 225 (483)
T KOG0780|consen 176 VDRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASI 225 (483)
T ss_pred HHHHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccc
Confidence 56666677665555545444333 334445 4444455677888876
No 272
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=96.41 E-value=0.011 Score=62.11 Aligned_cols=65 Identities=17% Similarity=0.277 Sum_probs=38.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcC-------CCeEEeecchhccCCCCcHHH-HHHHHHHHHHCCCcEEEecCC
Q 007244 21 ILVIMVGAPGSGKSTFCEHVMRSSA-------RPWARICQDTINKGKSGTKVQ-CLTSASSALKKGKSVFLDRCN 87 (611)
Q Consensus 21 ~LIvLvG~PGSGKST~A~~L~~~~~-------~~~~~Is~D~i~~~~~~~~~~-~~~~~~~~L~~Gk~VIID~tn 87 (611)
.-++|.|+||+||||+|+.+++.+. .+++.++.+.+.....+.... ....+.. ..|..++||...
T Consensus 59 ~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~~~~~g~~~~~~~~~~~~--a~~gvL~iDEi~ 131 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEILKR--AMGGVLFIDEAY 131 (284)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHhHhhcccchHHHHHHHHH--ccCcEEEEechh
Confidence 3589999999999999988776542 145566655554333332221 1122222 135567788743
No 273
>PHA02244 ATPase-like protein
Probab=96.41 E-value=0.0093 Score=64.70 Aligned_cols=69 Identities=25% Similarity=0.338 Sum_probs=47.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcCCCeEEeecc--hhc-cC---CCCcHHHHHHHHHHHHHCCCcEEEecCCCCHHHH
Q 007244 23 VIMVGAPGSGKSTFCEHVMRSSARPWARICQD--TIN-KG---KSGTKVQCLTSASSALKKGKSVFLDRCNLEREQR 93 (611)
Q Consensus 23 IvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D--~i~-~~---~~~~~~~~~~~~~~~L~~Gk~VIID~tnl~~~~R 93 (611)
|+|.|+||+|||++|+.++..++.++..++.. .+. .+ ..+.+ ....+.++++.|..+++|..+.-....
T Consensus 122 VLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~--~dgpLl~A~~~GgvLiLDEId~a~p~v 196 (383)
T PHA02244 122 VFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKF--HETPFYEAFKKGGLFFIDEIDASIPEA 196 (383)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccc--cchHHHHHhhcCCEEEEeCcCcCCHHH
Confidence 67799999999999999999999888777631 110 01 01111 113455668899999999977554443
No 274
>PF14519 Macro_2: Macro-like domain; PDB: 1TXZ_A 1TY8_A 1NJR_A.
Probab=96.40 E-value=0.0085 Score=62.15 Aligned_cols=156 Identities=19% Similarity=0.168 Sum_probs=78.9
Q ss_pred eEEEEeecCcch-hhhhhhHHHhhhhhcCCeEEEEEEcccceecc-------cCcccccEEEeCCCCCCcCCCChhhHHH
Q 007244 314 ARLVLVDLTQGS-KILSLVRAKAAQKHINPKKFFTFVGDITRLYT-------GGGLCCNVIANAANWRLKPGGGGVNAAI 385 (611)
Q Consensus 314 i~iV~vd~s~~s-~~Ls~V~s~~~~~~~~~~~v~i~~GDIt~~~~-------~~~~~~daIVN~aN~~L~~~ggGVa~aI 385 (611)
.+++++|.+..- +.+...-++.. ..++..+.++.|++..+.. .....+++||.|||+--- +|||...||
T Consensus 14 mkiil~D~N~~v~k~W~~~l~~~~--~~~~~~~~ih~~~~e~l~~~~~~~~~~~~~~~~aIVSPaNSfGy-MgGGFDLai 90 (280)
T PF14519_consen 14 MKIILCDTNPIVCKCWKKHLPKAL--ISSSNYVCIHNGKFESLNHTLRKSNKNHSTKKDAIVSPANSFGY-MGGGFDLAI 90 (280)
T ss_dssp -EEEEEES-HHHHHHHHHH-------------EEEEES-HHHHHHHTTSS--------EEEEEEEETT-----SHHHHHH
T ss_pred ceEEEEcCCHHHHHHHHHHccHhh--hccCceeeeecCcHHHHHHHHhhccccCCCCcceEECCchhccc-CCCchhHHH
Confidence 688998776521 11110001110 1123448889999887741 123458999999999999 899999999
Q ss_pred HHhhcH-HHHHHHHHhc--CCCCCCCEEEecCCC---CCCCCCCCCccEEEEecC---CC---CCCCCCCCCCCCchhhH
Q 007244 386 FSAAGP-ALEVATAERA--KSLYPGNSVIVPLPS---TSPLCGREGVTHVIHVLG---PN---MNPRRPNCLDGDYVKGC 453 (611)
Q Consensus 386 ~~aAG~-~l~~e~~~~~--~~~~~G~~v~T~l~~---~~~~~~~l~~k~ViH~vg---P~---~~~~~~~~~~~~~~~~~ 453 (611)
+++.|. .++..+++.. ...++|.+-+++++- .+--++.-+++||||+-. |. |... ..+....
T Consensus 91 ~~~fggk~~E~~~r~~l~~~y~pvGs~tvIdL~~~~~~~~~~~~~~i~yIi~~PTMv~P~~~~~d~~------~~~~t~~ 164 (280)
T PF14519_consen 91 SEYFGGKPFENWFRAQLGERYHPVGSCTVIDLPKCFEPSSIYNNWGIRYIIHVPTMVVPEKPVWDRE------VPYETGW 164 (280)
T ss_dssp HHHHTSHHHHHHHHHHTTTS---TT--EEEEGGGGG--------TTEEEEEEEEEES-TTS-S--TT-------TTTTTH
T ss_pred HHHhCCchhHHHHHHHHhccccCCCeeEEEECchhhhhhhcccccCceEEEECCccccCCCcccchh------HHHHHHH
Confidence 999764 6666676652 336889988877431 111235578999999832 22 2221 1233455
Q ss_pred HHHHHHHHHHHHHH----HHhhccccCCC
Q 007244 454 EILRKAYTSLFEGF----LSIVRSQEKLS 478 (611)
Q Consensus 454 ~~L~~ay~~~L~~a----~siafp~~~~~ 478 (611)
+.+.++.+++|..+ ..|..|-+|-+
T Consensus 165 ~~vfn~~WN~l~~~p~~IdtLiiPGLgTG 193 (280)
T PF14519_consen 165 SLVFNAMWNALRHAPEDIDTLIIPGLGTG 193 (280)
T ss_dssp HHHHHHHHHHHHTS-TT-SEEEE--SSSS
T ss_pred HHHHHHHHHhhccCCCCCCeEEECCcccc
Confidence 67778888887643 36677777733
No 275
>PRK08116 hypothetical protein; Validated
Probab=96.34 E-value=0.011 Score=61.48 Aligned_cols=104 Identities=11% Similarity=0.064 Sum_probs=59.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchhccC----CCCcHHHHHHHHHHHHHCCCcEEEecCC---CC
Q 007244 20 QILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKG----KSGTKVQCLTSASSALKKGKSVFLDRCN---LE 89 (611)
Q Consensus 20 p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D~i~~~----~~~~~~~~~~~~~~~L~~Gk~VIID~tn---l~ 89 (611)
+.-++|.|+||+|||++|..++..+ +.....++...+... .......-...+.+.+.....+|||... .+
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~~~dlLviDDlg~e~~t 193 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLVNADLLILDDLGAERDT 193 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhcCCCEEEEecccCCCCC
Confidence 3468999999999999999988764 344445554333211 0000001123344566666778999953 33
Q ss_pred HHHHHHHHHh--CC-CCCeEEEEEEeCCHHHHHHHHH
Q 007244 90 REQRTDFVKL--GG-PEVDVHAVVLDLPAKLCISRSV 123 (611)
Q Consensus 90 ~~~R~~~~~l--~~-~~~~v~vV~Ld~p~e~~~~Rl~ 123 (611)
.+....+..+ .. .....++|--+.+.+++..+..
T Consensus 194 ~~~~~~l~~iin~r~~~~~~~IiTsN~~~~eL~~~~~ 230 (268)
T PRK08116 194 EWAREKVYNIIDSRYRKGLPTIVTTNLSLEELKNQYG 230 (268)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHh
Confidence 4445555555 21 1222346666777777766543
No 276
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.34 E-value=0.035 Score=54.95 Aligned_cols=102 Identities=19% Similarity=0.217 Sum_probs=52.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCC---eEEeecchhc---cC--------CCCc-HHHHHHHHHHHHHCCCc-EEEec
Q 007244 22 LVIMVGAPGSGKSTFCEHVMRSSARP---WARICQDTIN---KG--------KSGT-KVQCLTSASSALKKGKS-VFLDR 85 (611)
Q Consensus 22 LIvLvG~PGSGKST~A~~L~~~~~~~---~~~Is~D~i~---~~--------~~~~-~~~~~~~~~~~L~~Gk~-VIID~ 85 (611)
+|+++||+||||||+++.+....... .+..-.|.+. .. +.+. ...+.+.++.+|+.+.. +++|-
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~gE 82 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVGE 82 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEcC
Confidence 79999999999999999987766421 1111122111 00 0111 11234667777876655 55555
Q ss_pred CCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHh
Q 007244 86 CNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVK 124 (611)
Q Consensus 86 tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~ 124 (611)
....+....+++....+..+....=..+......|+..
T Consensus 83 -ird~e~~~~~l~~a~~G~~v~~t~Ha~~~~~~~~Rl~~ 120 (198)
T cd01131 83 -MRDLETIRLALTAAETGHLVMSTLHTNSAAKTIDRIID 120 (198)
T ss_pred -CCCHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhHHHh
Confidence 44555444445552233322222222234455666643
No 277
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.34 E-value=0.045 Score=53.46 Aligned_cols=108 Identities=15% Similarity=0.122 Sum_probs=60.9
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHcCC--CeEEee-cchhcc---C---------CC--CcHHHHHHHHHHHHHCCCc
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSSAR--PWARIC-QDTINK---G---------KS--GTKVQCLTSASSALKKGKS 80 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~--~~~~Is-~D~i~~---~---------~~--~~~~~~~~~~~~~L~~Gk~ 80 (611)
....+++++|++||||||+.+.+...... ..+.+. ...+.. . .. .......+.+...++.+.+
T Consensus 23 ~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~pd 102 (186)
T cd01130 23 EARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRPD 102 (186)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCCC
Confidence 34678999999999999999999876542 122221 111110 0 00 0111234666777887777
Q ss_pred EEEecCCCCHHHHHHHHHh-C-CCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244 81 VFLDRCNLEREQRTDFVKL-G-GPEVDVHAVVLDLPAKLCISRSVKRIE 127 (611)
Q Consensus 81 VIID~tnl~~~~R~~~~~l-~-~~~~~v~vV~Ld~p~e~~~~Rl~~R~~ 127 (611)
+|+-+.-...+.. .+++. . -+..-+..+... +.....+|+..+..
T Consensus 103 ~i~igEir~~ea~-~~~~a~~tGh~g~~~T~Ha~-s~~~~~~Rl~~~~~ 149 (186)
T cd01130 103 RIIVGEVRGGEAL-DLLQAMNTGHPGGMTTIHAN-SAEEALTRLELLPS 149 (186)
T ss_pred EEEEEccCcHHHH-HHHHHHhcCCCCceeeecCC-CHHHHHHHHHHHHh
Confidence 7766655555543 34444 2 222133344433 45567788887765
No 278
>KOG2702 consensus Predicted panthothenate kinase/uridine kinase-related protein [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=96.27 E-value=0.0073 Score=61.12 Aligned_cols=110 Identities=20% Similarity=0.161 Sum_probs=65.1
Q ss_pred cCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCC----------e-EEeecc----------hhcc--------C--CCCcH
Q 007244 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARP----------W-ARICQD----------TINK--------G--KSGTK 64 (611)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~----------~-~~Is~D----------~i~~--------~--~~~~~ 64 (611)
+.+...++-|.|+||+||||.+..+.+..+.. . .++..| .+.+ | |-...
T Consensus 115 ~~n~~~l~glag~pGtgkst~~a~v~~aWp~~~~~f~~e~i~iaiivPMDGFHlsr~~LD~f~dP~~AharRGapwTFD~ 194 (323)
T KOG2702|consen 115 TSNNEELTGLAGRPGTGKSTRIAAVDNAWPVNVNKFAQESINIAIIVPMDGFHLSRRCLDLFKDPQTAHARRGAPWTFDS 194 (323)
T ss_pred cccchheeeeecCCCCcchhHHHHHHhhcchhhhhhhhhhcceeEEecccchhhhHHHHHhhcChHHHHhhcCCCcccCH
Confidence 45667899999999999999999988754311 1 122222 2211 1 11112
Q ss_pred HHHHHHHHHHHH----------------------------CCCcEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCH
Q 007244 65 VQCLTSASSALK----------------------------KGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPA 115 (611)
Q Consensus 65 ~~~~~~~~~~L~----------------------------~Gk~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~ 115 (611)
.-++.. .+.|+ ..+.||+++ |+-.-+...|.++ +.... -+++++..
T Consensus 195 ~lfl~l-~k~lkk~t~~~iyvPsFdHa~gDPv~DdicVs~~~rIvI~EG-nYlLl~~~~Wkdi~k~~d~---k~~idV~~ 269 (323)
T KOG2702|consen 195 NLFLQL-CKILKKTTIPDIYVPSFDHALGDPVPDDICVSKFTRIVILEG-NYLLLDQENWKDIYKTLDD---KYKIDVDY 269 (323)
T ss_pred HHHHHH-HHHHhhcCCCceeccccccccCCCCccceeecccceEEEEec-cEEEecCccHHHHHHHhhh---heeccccH
Confidence 222222 23333 123367777 4444444556555 44444 46889999
Q ss_pred HHHHHHHHhcccccC
Q 007244 116 KLCISRSVKRIEHEG 130 (611)
Q Consensus 116 e~~~~Rl~~R~~~~g 130 (611)
+...+|..+|.-..|
T Consensus 270 ~~a~~RVa~RHl~sG 284 (323)
T KOG2702|consen 270 EAAEERVAKRHLQSG 284 (323)
T ss_pred HHHHHHHHHHhhccc
Confidence 999999999976433
No 279
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.27 E-value=0.037 Score=63.17 Aligned_cols=112 Identities=15% Similarity=0.182 Sum_probs=61.8
Q ss_pred cCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEE------ee-----------cchhc-cC--CCCc--HHHHHHHHHH
Q 007244 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWAR------IC-----------QDTIN-KG--KSGT--KVQCLTSASS 73 (611)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~------Is-----------~D~i~-~~--~~~~--~~~~~~~~~~ 73 (611)
....+..++|.||+|+||||+|+.+++.+...... .+ .|.+. +. ..+. ..++.+.+..
T Consensus 34 ~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieidaas~~gvd~ir~ii~~~~~ 113 (546)
T PRK14957 34 TQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDAASRTGVEETKEILDNIQY 113 (546)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeecccccCHHHHHHHHHHHHh
Confidence 34567789999999999999999999876521000 00 01111 00 0111 0122222222
Q ss_pred HHH--CCCcEEEecCC-CCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244 74 ALK--KGKSVFLDRCN-LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (611)
Q Consensus 74 ~L~--~Gk~VIID~tn-l~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~ 127 (611)
.-. ..+.+|||... ++......+++. .+.+..+.+|+.-.....+..-+..|-.
T Consensus 114 ~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil~tI~SRc~ 171 (546)
T PRK14957 114 MPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCI 171 (546)
T ss_pred hhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhhhhHHHhee
Confidence 112 23468888743 445556667777 6665556666666666555555666653
No 280
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.27 E-value=0.0077 Score=68.68 Aligned_cols=54 Identities=13% Similarity=0.236 Sum_probs=44.9
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHHHHH
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSA 71 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~~~~ 71 (611)
.+|.=|+|-|||||||||+|+.++.+.+..|..|....+...|.+..+..+..+
T Consensus 466 ~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~i 519 (693)
T KOG0730|consen 466 SPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREV 519 (693)
T ss_pred CCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHH
Confidence 667889999999999999999999999888888888888877887776544333
No 281
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.27 E-value=0.029 Score=61.19 Aligned_cols=40 Identities=18% Similarity=0.239 Sum_probs=31.0
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHc----C-CCeEEeecchhc
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSS----A-RPWARICQDTIN 57 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~----~-~~~~~Is~D~i~ 57 (611)
..+.+++|+||+|+||||++.+|+..+ + .....++.|.++
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R 179 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYR 179 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEeccccc
Confidence 456799999999999999999998653 3 234567777774
No 282
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.27 E-value=0.0062 Score=65.17 Aligned_cols=39 Identities=21% Similarity=0.366 Sum_probs=33.0
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecch
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDT 55 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~ 55 (611)
-.+|+=|+|-||||+|||-+|++++.+.+..|.++..-.
T Consensus 182 I~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSE 220 (406)
T COG1222 182 IDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSE 220 (406)
T ss_pred CCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHH
Confidence 456788999999999999999999999998787665433
No 283
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.26 E-value=0.0058 Score=68.92 Aligned_cols=39 Identities=26% Similarity=0.432 Sum_probs=31.9
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i 56 (611)
..|.-++|.||||+|||++++.++...+.+++.++...+
T Consensus 86 ~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~ 124 (495)
T TIGR01241 86 KIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDF 124 (495)
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHH
Confidence 445669999999999999999999998877766665443
No 284
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.26 E-value=0.03 Score=64.73 Aligned_cols=112 Identities=17% Similarity=0.211 Sum_probs=65.6
Q ss_pred cCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCe----EEe-------e-----------cchhc-cC-CCCcHHHHHHHH
Q 007244 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPW----ARI-------C-----------QDTIN-KG-KSGTKVQCLTSA 71 (611)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~----~~I-------s-----------~D~i~-~~-~~~~~~~~~~~~ 71 (611)
....+..++|+|++|+||||+|+.+++.++..- ..+ + .|.+. +. .....+++.+.+
T Consensus 34 ~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~hpDviEIdAas~~gVDdIReLi 113 (700)
T PRK12323 34 QQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRFVDYIEMDAASNRGVDEMAQLL 113 (700)
T ss_pred hCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCCCcceEecccccCCHHHHHHHH
Confidence 566788999999999999999999999876310 000 0 01111 00 001112222222
Q ss_pred HHHH---HCC--CcEEEecCC-CCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244 72 SSAL---KKG--KSVFLDRCN-LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (611)
Q Consensus 72 ~~~L---~~G--k~VIID~tn-l~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~ 127 (611)
.... ..| +.+|||... ++......+++. .+....+.+|++-.....+...++.|-.
T Consensus 114 e~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrSRCq 176 (700)
T PRK12323 114 DKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCL 176 (700)
T ss_pred HHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHHHHH
Confidence 2211 122 468999855 445556667777 6666667777777777666666666644
No 285
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=96.25 E-value=0.012 Score=62.77 Aligned_cols=64 Identities=20% Similarity=0.297 Sum_probs=41.9
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHHHHHHHHHHCCCcEEEecCC
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCN 87 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L~~Gk~VIID~tn 87 (611)
..+..++|.||||+||||+|+.+++.++..+..++...+. ....+..+...+..+..++||...
T Consensus 49 ~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~------~~~~l~~~l~~l~~~~vl~IDEi~ 112 (328)
T PRK00080 49 EALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALE------KPGDLAAILTNLEEGDVLFIDEIH 112 (328)
T ss_pred CCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEeccccc------ChHHHHHHHHhcccCCEEEEecHh
Confidence 3345688999999999999999999988554444332221 111223333455667788888754
No 286
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.24 E-value=0.013 Score=61.51 Aligned_cols=40 Identities=25% Similarity=0.279 Sum_probs=31.5
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHc----C-CCeEEeecchhc
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSS----A-RPWARICQDTIN 57 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~----~-~~~~~Is~D~i~ 57 (611)
..+.+|+|+||+|+||||++.+|+..+ + .....|+.|.++
T Consensus 192 ~~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r 236 (282)
T TIGR03499 192 EQGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYR 236 (282)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccc
Confidence 457899999999999999999987654 3 345677887754
No 287
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.20 E-value=0.01 Score=70.10 Aligned_cols=68 Identities=19% Similarity=0.273 Sum_probs=46.2
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHHHHHHHHHHCC--CcEEEec
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKG--KSVFLDR 85 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L~~G--k~VIID~ 85 (611)
..|.-|+|.||||+||||+++.++..++..++.++...+.....+........+.+..... ..++||.
T Consensus 210 ~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~~g~~~~~l~~lf~~a~~~~p~il~iDE 279 (733)
T TIGR01243 210 EPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKYYGESEERLREIFKEAEENAPSIIFIDE 279 (733)
T ss_pred CCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcccccHHHHHHHHHHHHHHhcCCcEEEeeh
Confidence 4567799999999999999999999998777777766655544444433333333322222 3467777
No 288
>cd03331 Macro_Poa1p_like_SNF2 Macro domain, Poa1p_like family, SNF2 subfamily. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this subfamily contain a C-terminal macro domain that show similarity to the yeast protein Poa1p, reported to be a phosphatase specific for Appr-1"-p, a tRNA splicing metabolite. In addition, they also contain an SNF2 domain, defined by the presence of seven
Probab=96.18 E-value=0.054 Score=51.82 Aligned_cols=123 Identities=17% Similarity=0.152 Sum_probs=80.9
Q ss_pred EEEEEcccceecccCcccccEEEeCCCCCCcCCC-ChhhHHHHHhhcH---HHHHHHHHhcCCCCCCCEEEecCCCCCCC
Q 007244 345 FFTFVGDITRLYTGGGLCCNVIANAANWRLKPGG-GGVNAAIFSAAGP---ALEVATAERAKSLYPGNSVIVPLPSTSPL 420 (611)
Q Consensus 345 v~i~~GDIt~~~~~~~~~~daIVN~aN~~L~~~g-gGVa~aI~~aAG~---~l~~e~~~~~~~~~~G~~v~T~l~~~~~~ 420 (611)
|+.++||++.-.... .+..+||+..|..-. .| ||+++||.++.-. .++. |.+. +.+.-|++.+++.......
T Consensus 2 I~yv~GD~~~p~~~~-~~~~iI~H~cN~~G~-WG~gGia~al~~k~p~~~~~Y~~-~~~~-~dl~LG~~~li~v~~~~~~ 77 (152)
T cd03331 2 VRYVYGDVTHPSAVC-AEDAIIVHCVDDSGH-WGRGGLFTALEKRSDQPRKAYEL-AGKM-KDLHLGDLHLFPIDDKNSR 77 (152)
T ss_pred eEEEeCccCCCCccC-CCCeEEEEEECCCCC-CCcchHHHHHHHhCCcHHHHHHH-HHhc-CCCccccEEEEEeccccCC
Confidence 678999999986210 124699999999988 77 7999999998732 3333 4443 5577899999884321111
Q ss_pred CCCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH----HHhhccccCCC
Q 007244 421 CGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF----LSIVRSQEKLS 478 (611)
Q Consensus 421 ~~~l~~k~ViH~vgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a----~siafp~~~~~ 478 (611)
.-+-.+|...++....+..+. ..-.-..|.+|...+-..+ .||.+|-||.+
T Consensus 78 --~~~~~~va~l~~q~~~~~~~~-----~~~~~~aL~~~L~~~~~~a~~~~~sVhmPrIg~G 132 (152)
T cd03331 78 --LKGPDWVALIVAQHRDKSNPL-----SGIKLSALEKGLKKIYFAAKQKSASVHLPRIGHS 132 (152)
T ss_pred --CCCCeEEEEEEeEccCCCCCC-----CccCHHHHHHHHHHHHHHHHcCCCEEEeCCCCCC
Confidence 122368989998887655221 1234466666666655544 47899999854
No 289
>PRK04296 thymidine kinase; Provisional
Probab=96.17 E-value=0.043 Score=54.03 Aligned_cols=92 Identities=18% Similarity=0.149 Sum_probs=52.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeec--chhc------c--CC------CCcHHHHHHHHHHHHHCC-
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQ--DTIN------K--GK------SGTKVQCLTSASSALKKG- 78 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~--D~i~------~--~~------~~~~~~~~~~~~~~L~~G- 78 (611)
|..+++++|+||+||||++..++.++ +.....+.. |.-. . +. .......+..+.+ ..+
T Consensus 1 ~g~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~--~~~~ 78 (190)
T PRK04296 1 MAKLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE--EGEK 78 (190)
T ss_pred CcEEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHh--hCCC
Confidence 45789999999999999999987765 223333421 2110 0 10 0011223333333 233
Q ss_pred -CcEEEecCCCC-HHHHHHHHHh-CCCCCeEEEEEEe
Q 007244 79 -KSVFLDRCNLE-REQRTDFVKL-GGPEVDVHAVVLD 112 (611)
Q Consensus 79 -k~VIID~tnl~-~~~R~~~~~l-~~~~~~v~vV~Ld 112 (611)
..+|||...+- .++...+++. +..+..+++.-++
T Consensus 79 ~dvviIDEaq~l~~~~v~~l~~~l~~~g~~vi~tgl~ 115 (190)
T PRK04296 79 IDCVLIDEAQFLDKEQVVQLAEVLDDLGIPVICYGLD 115 (190)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHHcCCeEEEEecC
Confidence 34899996544 4556667777 7777755555444
No 290
>PLN03025 replication factor C subunit; Provisional
Probab=96.17 E-value=0.026 Score=59.96 Aligned_cols=27 Identities=26% Similarity=0.337 Sum_probs=22.6
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRSS 44 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~ 44 (611)
...|. ++|.||||+||||+|+.+++.+
T Consensus 32 ~~~~~-lll~Gp~G~GKTtla~~la~~l 58 (319)
T PLN03025 32 GNMPN-LILSGPPGTGKTTSILALAHEL 58 (319)
T ss_pred CCCce-EEEECCCCCCHHHHHHHHHHHH
Confidence 34455 5689999999999999999886
No 291
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.16 E-value=0.032 Score=55.47 Aligned_cols=39 Identities=15% Similarity=0.176 Sum_probs=28.7
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEeecch
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDT 55 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~---~~~~~Is~D~ 55 (611)
...+..++|.|+||+||||+|+.+..... ..+..++.+.
T Consensus 35 ~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~ 76 (226)
T TIGR03420 35 GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAE 76 (226)
T ss_pred cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHH
Confidence 45567899999999999999999987643 3344455433
No 292
>PRK06893 DNA replication initiation factor; Validated
Probab=96.15 E-value=0.023 Score=57.60 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=21.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHc
Q 007244 21 ILVIMVGAPGSGKSTFCEHVMRSS 44 (611)
Q Consensus 21 ~LIvLvG~PGSGKST~A~~L~~~~ 44 (611)
..++|.|+||+|||++++.+..++
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~ 63 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHY 63 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999998764
No 293
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=96.15 E-value=0.011 Score=66.81 Aligned_cols=29 Identities=31% Similarity=0.429 Sum_probs=24.9
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHcCC
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSSAR 46 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~ 46 (611)
..|.-++|.||||+|||++++.+++.++.
T Consensus 214 ~~p~GILLyGPPGTGKT~LAKAlA~eL~~ 242 (512)
T TIGR03689 214 KPPKGVLLYGPPGCGKTLIAKAVANSLAQ 242 (512)
T ss_pred CCCcceEEECCCCCcHHHHHHHHHHhhcc
Confidence 34567999999999999999999998763
No 294
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.15 E-value=0.0038 Score=62.74 Aligned_cols=26 Identities=35% Similarity=0.465 Sum_probs=22.6
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHH
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMR 42 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~ 42 (611)
-.+..+++++||||||||||.+.+..
T Consensus 25 v~~Gevv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 25 VEKGEVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHC
Confidence 35678999999999999999999854
No 295
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.14 E-value=0.037 Score=60.43 Aligned_cols=41 Identities=22% Similarity=0.272 Sum_probs=32.4
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchhcc
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINK 58 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D~i~~ 58 (611)
..+.+|+|+||+|+||||++.+++..+ +.....|+.|.++.
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~ 247 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRS 247 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCc
Confidence 457899999999999999999988654 33455688887753
No 296
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.10 E-value=0.06 Score=61.99 Aligned_cols=112 Identities=13% Similarity=0.139 Sum_probs=65.6
Q ss_pred cCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeE-------------Ee------ecchhc-cC-CCCcHHHH---HHHH
Q 007244 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWA-------------RI------CQDTIN-KG-KSGTKVQC---LTSA 71 (611)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~-------------~I------s~D~i~-~~-~~~~~~~~---~~~~ 71 (611)
....+..++|.||+|+||||+|+.+++.+..... .+ +.|.+. ++ .....+++ .+.+
T Consensus 31 ~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~dvieidaas~~gvd~iRel~~~~ 110 (584)
T PRK14952 31 AGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSIDVVELDAASHGGVDDTRELRDRA 110 (584)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCceEEEeccccccCHHHHHHHHHHH
Confidence 4567889999999999999999999988652100 00 011111 11 01111222 1222
Q ss_pred HHH--HHCCCcEEEecCC-CCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244 72 SSA--LKKGKSVFLDRCN-LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (611)
Q Consensus 72 ~~~--L~~Gk~VIID~tn-l~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~ 127 (611)
... ....+.+|||... ++......+++. .+....+.+|++....+.+..-++.|..
T Consensus 111 ~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~TI~SRc~ 170 (584)
T PRK14952 111 FYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTH 170 (584)
T ss_pred HhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHHHHHhce
Confidence 111 1234679999865 444555566666 6666667777777666766666777754
No 297
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.10 E-value=0.035 Score=60.93 Aligned_cols=30 Identities=20% Similarity=0.141 Sum_probs=26.2
Q ss_pred cCCCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (611)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~ 45 (611)
....|.-++|.||||+||||+|+.+++.+.
T Consensus 34 ~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~ 63 (397)
T PRK14955 34 MGRVGHGYIFSGLRGVGKTTAARVFAKAVN 63 (397)
T ss_pred hCCcceeEEEECCCCCCHHHHHHHHHHHhc
Confidence 345678899999999999999999998875
No 298
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=96.09 E-value=0.013 Score=61.36 Aligned_cols=64 Identities=16% Similarity=0.264 Sum_probs=39.4
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHHHHHHHHHHCCCcEEEecCC
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCN 87 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L~~Gk~VIID~tn 87 (611)
..+..++|.||||+|||++|+.+++.++..+..+....+. ....+ ......+..+..++||...
T Consensus 28 ~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~-----~~~~l-~~~l~~~~~~~vl~iDEi~ 91 (305)
T TIGR00635 28 EALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALE-----KPGDL-AAILTNLEEGDVLFIDEIH 91 (305)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhc-----CchhH-HHHHHhcccCCEEEEehHh
Confidence 3445688999999999999999999987554333321111 01111 2223345566677888744
No 299
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.09 E-value=0.011 Score=68.06 Aligned_cols=41 Identities=27% Similarity=0.551 Sum_probs=35.8
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhc
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN 57 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~ 57 (611)
.-+..++.|+||||.|||++++.+++.+++.|++++..-++
T Consensus 347 ~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvr 387 (782)
T COG0466 347 KLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVR 387 (782)
T ss_pred cCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccc
Confidence 44557999999999999999999999999999999965544
No 300
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.08 E-value=0.032 Score=63.24 Aligned_cols=110 Identities=15% Similarity=0.211 Sum_probs=61.6
Q ss_pred cCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeE---Ee------e--------cchhc-c-CCCCcHHHHHHHHHHHH-
Q 007244 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWA---RI------C--------QDTIN-K-GKSGTKVQCLTSASSAL- 75 (611)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~---~I------s--------~D~i~-~-~~~~~~~~~~~~~~~~L- 75 (611)
....+..++|.||||+||||+|+.+++.++.... .- + .|.+. + ......+++.+ +.+.+
T Consensus 34 ~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eidaas~~~v~~iR~-l~~~~~ 112 (509)
T PRK14958 34 QQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVDAASRTKVEDTRE-LLDNIP 112 (509)
T ss_pred hCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEcccccCCHHHHHH-HHHHHh
Confidence 4567889999999999999999999998763100 00 0 01111 0 00011111111 21211
Q ss_pred ---HCC--CcEEEecCC-CCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcc
Q 007244 76 ---KKG--KSVFLDRCN-LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRI 126 (611)
Q Consensus 76 ---~~G--k~VIID~tn-l~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~ 126 (611)
..| +.+|||... ++......+++. .+.+..+.+|+.......+..-+..|-
T Consensus 113 ~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI~SRc 170 (509)
T PRK14958 113 YAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSRC 170 (509)
T ss_pred hccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHHHHHHh
Confidence 122 468999865 345555667777 666555667776665555554455554
No 301
>cd02901 Macro_Poa1p_like Macro domain, Poa1p_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family show similarity to the yeast protein Poa1p, reported to be a phosphatase specific for Appr-1"-p, a tRNA splicing metabolite. Poa1p may play a role in tRNA splicing regulation.
Probab=96.06 E-value=0.0027 Score=59.17 Aligned_cols=41 Identities=10% Similarity=0.208 Sum_probs=34.9
Q ss_pred hhhcccCCCCCCCccccccCccCCCCCChHHHHHHHHHHHH
Q 007244 265 ASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVE 305 (611)
Q Consensus 265 ~s~~~~~~~~~~~SiAfPaIStGi~gfP~~~aa~Iiv~tv~ 305 (611)
..+.+.+.++++.|||||.|++|++|||.+++++||.+...
T Consensus 98 ~~~~~~a~~~~~~sva~P~iG~G~~G~~w~~v~~ii~~~~~ 138 (140)
T cd02901 98 RELRAHARDNGIKSVAMPRIGCGLGGLDWEEVEPLIEKALA 138 (140)
T ss_pred HHHHHHHHHcCCCEEeeCCCCCcCCCCCHHHHHHHHHHHhc
Confidence 34445577789999999999999999999999999988754
No 302
>PRK04195 replication factor C large subunit; Provisional
Probab=96.05 E-value=0.033 Score=62.66 Aligned_cols=34 Identities=15% Similarity=0.351 Sum_probs=29.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeec
Q 007244 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ 53 (611)
Q Consensus 20 p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~ 53 (611)
+..++|.||||+||||+|+.+++.++..+..++.
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el~~~~ielna 72 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDYGWEVIELNA 72 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcc
Confidence 6789999999999999999999999866655554
No 303
>PRK08727 hypothetical protein; Validated
Probab=96.05 E-value=0.06 Score=54.70 Aligned_cols=23 Identities=17% Similarity=0.364 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Q 007244 21 ILVIMVGAPGSGKSTFCEHVMRS 43 (611)
Q Consensus 21 ~LIvLvG~PGSGKST~A~~L~~~ 43 (611)
..++|.|++|+|||+++..+...
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~ 64 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAA 64 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35999999999999999998654
No 304
>PRK05642 DNA replication initiation factor; Validated
Probab=96.05 E-value=0.031 Score=56.87 Aligned_cols=36 Identities=17% Similarity=0.244 Sum_probs=25.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchh
Q 007244 21 ILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTI 56 (611)
Q Consensus 21 ~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D~i 56 (611)
..++|+|++|+|||++++.+...+ +.....++.+.+
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~ 84 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAEL 84 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHH
Confidence 568999999999999999987542 333444555444
No 305
>TIGR03707 PPK2_P_aer polyphosphate kinase 2, PA0141 family. Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by Pfam model pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1).
Probab=96.05 E-value=0.072 Score=54.35 Aligned_cols=111 Identities=15% Similarity=0.228 Sum_probs=72.3
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcH-HHHHHHHHHHH-HCCCcEEEecCCCCHHHHH
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTK-VQCLTSASSAL-KKGKSVFLDRCNLEREQRT 94 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~-~~~~~~~~~~L-~~Gk~VIID~tnl~~~~R~ 94 (611)
.+.|.||||-|..||||...+++|...++...+.+.. +......+. .-.+-..-+.| ..|...|+|...+...-+.
T Consensus 28 ~~~~vlIv~eG~DaAGKg~~I~~l~~~lDPRg~~v~~--~~~pt~eE~~~p~lwRfw~~lP~~G~i~IF~rSwY~~~lv~ 105 (230)
T TIGR03707 28 TGARVVIVFEGRDAAGKGGTIKRITEHLNPRGARVVA--LPKPSDRERTQWYFQRYVQHLPAAGEIVLFDRSWYNRAGVE 105 (230)
T ss_pred cCCCEEEEEeCCCCCCchHHHHHHHHhcCCCeeEEEe--CCCCCHHHHcChHHHHHHHhCCCCCeEEEEeCchhhhHHHH
Confidence 3469999999999999999999999998866554432 100000000 00112222222 4567777777555542211
Q ss_pred -------------------HHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccccc
Q 007244 95 -------------------DFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHE 129 (611)
Q Consensus 95 -------------------~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~ 129 (611)
.|-+. ...|+.++-+||.++.++..+|+.+|...+
T Consensus 106 rv~~~~~~~~~~~~~~~I~~FEr~L~~~G~~IlKfflhIsk~eQ~kRl~~r~~~p 160 (230)
T TIGR03707 106 RVMGFCTDEEYEEFLRQVPEFERMLVRDGIHLFKYWLSVSREEQLRRFKARIDDP 160 (230)
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHhcCC
Confidence 12233 678888999999999999999999998754
No 306
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.04 E-value=0.036 Score=60.55 Aligned_cols=81 Identities=22% Similarity=0.307 Sum_probs=55.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcC-----CCeEEeecchhccCCCC---c-------------HHHHHHHHHHHHHC
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSSA-----RPWARICQDTINKGKSG---T-------------KVQCLTSASSALKK 77 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~~-----~~~~~Is~D~i~~~~~~---~-------------~~~~~~~~~~~L~~ 77 (611)
++.+|+|+||.|.||||-.-+|+..+. .....|+.|.+|-|... . ..+-+..+...|+.
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~ 281 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRD 281 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhc
Confidence 478999999999999998888887654 23567899999754211 1 11223555667777
Q ss_pred CCcEEEecCCCCHHHHHHHHHh
Q 007244 78 GKSVFLDRCNLEREQRTDFVKL 99 (611)
Q Consensus 78 Gk~VIID~tnl~~~~R~~~~~l 99 (611)
-..|.||....+..+.....++
T Consensus 282 ~d~ILVDTaGrs~~D~~~i~el 303 (407)
T COG1419 282 CDVILVDTAGRSQYDKEKIEEL 303 (407)
T ss_pred CCEEEEeCCCCCccCHHHHHHH
Confidence 7889999977766555444433
No 307
>CHL00176 ftsH cell division protein; Validated
Probab=96.03 E-value=0.011 Score=68.66 Aligned_cols=39 Identities=23% Similarity=0.424 Sum_probs=31.8
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i 56 (611)
..|.-++|.||||+|||++|+.++.+.+.+++.++...+
T Consensus 214 ~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f 252 (638)
T CHL00176 214 KIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEF 252 (638)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHH
Confidence 345669999999999999999999998877766665443
No 308
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=96.02 E-value=0.0049 Score=62.53 Aligned_cols=36 Identities=39% Similarity=0.717 Sum_probs=28.1
Q ss_pred EEEEEcCCCCcHHHHHHHH---HHHcCCCeEEeecchhc
Q 007244 22 LVIMVGAPGSGKSTFCEHV---MRSSARPWARICQDTIN 57 (611)
Q Consensus 22 LIvLvG~PGSGKST~A~~L---~~~~~~~~~~Is~D~i~ 57 (611)
--+++|||||||||++.-+ +...++++..|+.|=-.
T Consensus 4 gqvVIGPPgSGKsTYc~g~~~fls~~gr~~~vVNLDPaN 42 (290)
T KOG1533|consen 4 GQVVIGPPGSGKSTYCNGMSQFLSAIGRPVAVVNLDPAN 42 (290)
T ss_pred ceEEEcCCCCCccchhhhHHHHHHHhCCceEEEecCCcc
Confidence 3578999999999998764 45677788888876543
No 309
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.02 E-value=0.033 Score=61.12 Aligned_cols=40 Identities=18% Similarity=0.204 Sum_probs=31.1
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEeecchhc
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTIN 57 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~---~~~~~Is~D~i~ 57 (611)
..|.+|+|+|++|+||||++.+|+..+. .....++.|.++
T Consensus 239 ~~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R 281 (436)
T PRK11889 239 KEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 281 (436)
T ss_pred cCCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc
Confidence 4568999999999999999999976543 234567777765
No 310
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.01 E-value=0.041 Score=65.60 Aligned_cols=31 Identities=13% Similarity=0.260 Sum_probs=27.5
Q ss_pred cCCCcEEEEEEcCCCCcHHHHHHHHHHHcCC
Q 007244 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSAR 46 (611)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~ 46 (611)
.+..+..++|+|+||+||||+|+.+++.++.
T Consensus 34 ~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnc 64 (944)
T PRK14949 34 QQRLHHAYLFTGTRGVGKTSLARLFAKGLNC 64 (944)
T ss_pred hCCCCeEEEEECCCCCCHHHHHHHHHHhccC
Confidence 4567889999999999999999999998763
No 311
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.00 E-value=0.06 Score=55.70 Aligned_cols=41 Identities=20% Similarity=0.464 Sum_probs=34.5
Q ss_pred cCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh
Q 007244 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (611)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i 56 (611)
..+.|.-|++-||||.|||-+|+.|+.+...++.++..-.+
T Consensus 147 g~WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~l 187 (368)
T COG1223 147 GDWAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATEL 187 (368)
T ss_pred cccCcceeEEECCCCccHHHHHHHHhcccCCceEEechHHH
Confidence 46789999999999999999999999998877766654333
No 312
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.00 E-value=0.018 Score=63.02 Aligned_cols=40 Identities=25% Similarity=0.280 Sum_probs=31.6
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHcC-------CCeEEeecchhc
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSSA-------RPWARICQDTIN 57 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~-------~~~~~Is~D~i~ 57 (611)
..|.+|+|+||+|+||||.+.+++..+. .....++.|.++
T Consensus 172 ~~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R 218 (388)
T PRK12723 172 LKKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYR 218 (388)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCcc
Confidence 4578999999999999999999987542 345567778764
No 313
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=96.00 E-value=0.017 Score=60.83 Aligned_cols=33 Identities=18% Similarity=0.393 Sum_probs=27.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh
Q 007244 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (611)
Q Consensus 22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i 56 (611)
+|+++||+|||||+++..|++.++.. +|+.|.+
T Consensus 1 vi~i~G~t~~GKs~la~~l~~~~~~~--iis~Ds~ 33 (287)
T TIGR00174 1 VIFIMGPTAVGKSQLAIQLAKKLNAE--IISVDSM 33 (287)
T ss_pred CEEEECCCCCCHHHHHHHHHHhCCCc--EEEechh
Confidence 58999999999999999999998744 4666554
No 314
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=95.98 E-value=0.0059 Score=62.47 Aligned_cols=30 Identities=33% Similarity=0.550 Sum_probs=21.3
Q ss_pred EEcCCCCcHHHHHHHHHHHcC---CCeEEeecc
Q 007244 25 MVGAPGSGKSTFCEHVMRSSA---RPWARICQD 54 (611)
Q Consensus 25 LvG~PGSGKST~A~~L~~~~~---~~~~~Is~D 54 (611)
++||+||||||+++.+.+-+. +....|+.|
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLD 33 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLD 33 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcc
Confidence 589999999999999877544 455667643
No 315
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.97 E-value=0.0072 Score=59.04 Aligned_cols=105 Identities=15% Similarity=0.137 Sum_probs=55.6
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchhc----cCCCCcHHHHHHHHHHHHHCCCcEEEecCCCCH
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTIN----KGKSGTKVQCLTSASSALKKGKSVFLDRCNLER 90 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D~i~----~~~~~~~~~~~~~~~~~L~~Gk~VIID~tnl~~ 90 (611)
..+.-++|.|+||+|||++|..++.+. +.....++...+. ...... -.......+..-...|||......
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~---~~~~~~~~l~~~dlLilDDlG~~~ 121 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDG---SYEELLKRLKRVDLLILDDLGYEP 121 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCT---THCHHHHHHHTSSCEEEETCTSS-
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceecccccccccc---chhhhcCccccccEecccccceee
Confidence 345669999999999999999987642 3334445544332 111110 112334566777889999965543
Q ss_pred ---HHHHHHHHh--CCCCCeEEEEEEeCCHHHHHHHHHhc
Q 007244 91 ---EQRTDFVKL--GGPEVDVHAVVLDLPAKLCISRSVKR 125 (611)
Q Consensus 91 ---~~R~~~~~l--~~~~~~v~vV~Ld~p~e~~~~Rl~~R 125 (611)
.....+.++ ..++-...+|--..+.+.+.+.+..|
T Consensus 122 ~~~~~~~~l~~ii~~R~~~~~tIiTSN~~~~~l~~~~~d~ 161 (178)
T PF01695_consen 122 LSEWEAELLFEIIDERYERKPTIITSNLSPSELEEVLGDR 161 (178)
T ss_dssp --HHHHHCTHHHHHHHHHT-EEEEEESS-HHHHHT-----
T ss_pred ecccccccchhhhhHhhcccCeEeeCCCchhhHhhccccc
Confidence 333434444 22222345666677888777777644
No 316
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.96 E-value=0.055 Score=62.74 Aligned_cols=30 Identities=17% Similarity=0.289 Sum_probs=26.6
Q ss_pred cCCCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (611)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~ 45 (611)
....+..++|+||+|+||||+|+.+++.++
T Consensus 33 ~grl~HAyLF~GPpGvGKTTlAriLAK~Ln 62 (702)
T PRK14960 33 RGRLHHAYLFTGTRGVGKTTIARILAKCLN 62 (702)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 445578999999999999999999999876
No 317
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=95.95 E-value=0.045 Score=65.42 Aligned_cols=112 Identities=14% Similarity=0.157 Sum_probs=65.4
Q ss_pred cCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeE------Eee-------------cchhc-cC-CCCcHHHHHHHHHHH
Q 007244 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWA------RIC-------------QDTIN-KG-KSGTKVQCLTSASSA 74 (611)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~------~Is-------------~D~i~-~~-~~~~~~~~~~~~~~~ 74 (611)
....+..++|.|++|+||||+|+.+++.+..... -.| .|.+. ++ .....+++.+...+.
T Consensus 33 ~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~ 112 (824)
T PRK07764 33 SGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDVTEIDAASHGGVDDARELRERA 112 (824)
T ss_pred hCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcEEEecccccCCHHHHHHHHHHH
Confidence 4566788999999999999999999998752100 000 11110 11 111122222221111
Q ss_pred ----H-HCCCcEEEecCC-CCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244 75 ----L-KKGKSVFLDRCN-LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (611)
Q Consensus 75 ----L-~~Gk~VIID~tn-l~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~ 127 (611)
+ ...+.+|||... ++......++++ .+....+++|++....+.++.-++.|..
T Consensus 113 ~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TIrSRc~ 172 (824)
T PRK07764 113 FFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIRSRTH 172 (824)
T ss_pred HhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhhee
Confidence 1 223568898744 555556677777 7766667777777666667666777754
No 318
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=95.94 E-value=0.0096 Score=65.48 Aligned_cols=41 Identities=17% Similarity=0.164 Sum_probs=30.9
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEeecchhc
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTIN 57 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~---~~~~~Is~D~i~ 57 (611)
...|.+|.|+|++||||||+++.|...+. .....|+.|.+.
T Consensus 209 ~~~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfY 252 (460)
T PLN03046 209 DIPPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFY 252 (460)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCcc
Confidence 44789999999999999999999976543 224556666653
No 319
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=95.94 E-value=0.11 Score=55.87 Aligned_cols=105 Identities=18% Similarity=0.212 Sum_probs=60.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeec-c--hhc--c--CC---------CC-cHHHHHHHHHHHHHCCCcE
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ-D--TIN--K--GK---------SG-TKVQCLTSASSALKKGKSV 81 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~-D--~i~--~--~~---------~~-~~~~~~~~~~~~L~~Gk~V 81 (611)
....|+++|++||||||+.+.|....+....++.- | .+. . +. .+ ......+.+..+|+..-++
T Consensus 159 ~~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD~ 238 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPDR 238 (332)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCCCe
Confidence 35679999999999999999999877643322321 1 111 0 00 00 0112346778888888776
Q ss_pred EEecCCCCHHHHHHHHHh--CCCCCeEEEEEEeCCHHHHHHHHHhc
Q 007244 82 FLDRCNLEREQRTDFVKL--GGPEVDVHAVVLDLPAKLCISRSVKR 125 (611)
Q Consensus 82 IID~tnl~~~~R~~~~~l--~~~~~~v~vV~Ld~p~e~~~~Rl~~R 125 (611)
|+=+--...+.. .+++. ..+...+..+.-. +......|+...
T Consensus 239 IivGEiR~~ea~-~~l~a~~tGh~G~~tTiHa~-s~~~ai~Rl~~~ 282 (332)
T PRK13900 239 IIVGELRGAEAF-SFLRAINTGHPGSISTLHAD-SPAMAIEQLKLM 282 (332)
T ss_pred EEEEecCCHHHH-HHHHHHHcCCCcEEEEEecC-CHHHHHHHHHHH
Confidence 665645555433 34443 3332234555544 344566887654
No 320
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=95.93 E-value=0.06 Score=61.01 Aligned_cols=112 Identities=15% Similarity=0.155 Sum_probs=61.1
Q ss_pred cCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeE----------Eee-----------cchhc-cC-CCCcHHHHHHHHH
Q 007244 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWA----------RIC-----------QDTIN-KG-KSGTKVQCLTSAS 72 (611)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~----------~Is-----------~D~i~-~~-~~~~~~~~~~~~~ 72 (611)
.+..+..++|+||||+||||+|+.+++.++.... ..+ .|.+. +. .....+++...+.
T Consensus 39 ~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie 118 (507)
T PRK06645 39 NDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIE 118 (507)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHH
Confidence 4455778999999999999999999998763210 000 01111 00 0011122222222
Q ss_pred HHH-----HCCCcEEEecCC-CCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244 73 SAL-----KKGKSVFLDRCN-LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (611)
Q Consensus 73 ~~L-----~~Gk~VIID~tn-l~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~ 127 (611)
.+- ...+.+|||... ++......+++. .+.+..+.+|+.....+.+..-+..|..
T Consensus 119 ~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI~SRc~ 180 (507)
T PRK06645 119 SAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIISRCQ 180 (507)
T ss_pred HHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHHHhcce
Confidence 111 233568999854 344455556666 5555555666665555555555666643
No 321
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.92 E-value=0.0076 Score=56.38 Aligned_cols=28 Identities=21% Similarity=0.379 Sum_probs=25.3
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~ 45 (611)
+...+|+|.|++|+|||||++.+++.++
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 4456899999999999999999999887
No 322
>PRK09183 transposase/IS protein; Provisional
Probab=95.91 E-value=0.034 Score=57.56 Aligned_cols=121 Identities=12% Similarity=0.148 Sum_probs=61.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchhccCCCCcHH--HHHHHHHHHHHCCCcEEEecCCC---CH
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGKSGTKV--QCLTSASSALKKGKSVFLDRCNL---ER 90 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D~i~~~~~~~~~--~~~~~~~~~L~~Gk~VIID~tnl---~~ 90 (611)
....++|+||||+||||++..+.... +.....++...+......... .........+..-..+|||...+ ..
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~~~~~dlLiiDdlg~~~~~~ 180 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRGVMAPRLLIIDEIGYLPFSQ 180 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHHhcCCCEEEEcccccCCCCh
Confidence 34568899999999999999986542 322333342222110000000 01112222233445689998553 33
Q ss_pred HHHHHHHHh--CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhh
Q 007244 91 EQRTDFVKL--GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQK 147 (611)
Q Consensus 91 ~~R~~~~~l--~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~ 147 (611)
.....+..+ ..+.-..++|--..+.+.+.+...... ...+.++.|+...
T Consensus 181 ~~~~~lf~li~~r~~~~s~iiTsn~~~~~w~~~~~~d~--------~~~~ai~dRl~~~ 231 (259)
T PRK09183 181 EEANLFFQVIAKRYEKGSMILTSNLPFGQWDQTFAGDA--------ALTSAMLDRLLHH 231 (259)
T ss_pred HHHHHHHHHHHHHHhcCcEEEecCCCHHHHHHHhcCch--------hHHHHHHHHHhcc
Confidence 444445555 222222345566778777777652111 2445667776643
No 323
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.90 E-value=0.039 Score=62.48 Aligned_cols=30 Identities=17% Similarity=0.194 Sum_probs=26.5
Q ss_pred cCCCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (611)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~ 45 (611)
....+..++|+||||+||||+|+.+++.+.
T Consensus 32 ~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~ 61 (504)
T PRK14963 32 QGRLGHAYLFSGPRGVGKTTTARLIAMAVN 61 (504)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 456788999999999999999999998764
No 324
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.89 E-value=0.057 Score=60.88 Aligned_cols=111 Identities=16% Similarity=0.130 Sum_probs=64.0
Q ss_pred cCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeE---E--------------eecchhc-cCC-CCcHHHHHHHHHHHH-
Q 007244 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWA---R--------------ICQDTIN-KGK-SGTKVQCLTSASSAL- 75 (611)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~---~--------------Is~D~i~-~~~-~~~~~~~~~~~~~~L- 75 (611)
.+.-|.-++|+||+|+||||+|+.+++.++.... . ...|.+. +.. ....+++.. +.+.+
T Consensus 31 ~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eidaas~~~vddIR~-Iie~~~ 109 (491)
T PRK14964 31 LNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDAASNTSVDDIKV-ILENSC 109 (491)
T ss_pred cCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEecccCCCHHHHHH-HHHHHH
Confidence 4556778999999999999999999986531100 0 0011111 000 011122211 21111
Q ss_pred -----HCCCcEEEecCC-CCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244 76 -----KKGKSVFLDRCN-LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (611)
Q Consensus 76 -----~~Gk~VIID~tn-l~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~ 127 (611)
...+.+|||... ++......+++. .+.+..+.+|+.....+.+...+..|..
T Consensus 110 ~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI~SRc~ 168 (491)
T PRK14964 110 YLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTIISRCQ 168 (491)
T ss_pred hccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHHHHHHhhe
Confidence 234568999854 444555666666 6665566677766666777777777765
No 325
>PLN02796 D-glycerate 3-kinase
Probab=95.89 E-value=0.01 Score=63.89 Aligned_cols=28 Identities=14% Similarity=0.203 Sum_probs=25.1
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~ 45 (611)
..|.+|.|+|++||||||+++.|...+.
T Consensus 98 ~~pliIGI~G~sGSGKSTLa~~L~~lL~ 125 (347)
T PLN02796 98 IPPLVIGISAPQGCGKTTLVFALVYLFN 125 (347)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHhc
Confidence 5789999999999999999999987654
No 326
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=95.89 E-value=0.043 Score=64.44 Aligned_cols=111 Identities=14% Similarity=0.173 Sum_probs=61.1
Q ss_pred cCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeE---------Eeec--------chhc-cC-CCCcHHHHHHHHHHHHH
Q 007244 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWA---------RICQ--------DTIN-KG-KSGTKVQCLTSASSALK 76 (611)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~---------~Is~--------D~i~-~~-~~~~~~~~~~~~~~~L~ 76 (611)
....+..++|+|++|+||||+++.+++.++.... ..+. |.+. +. .....+++.+.+.....
T Consensus 34 ~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEIDAas~rgVDdIReLIe~a~~ 113 (830)
T PRK07003 34 GGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVY 113 (830)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEecccccccHHHHHHHHHHHHh
Confidence 4456888999999999999999999998762110 0000 1111 00 00111122222222111
Q ss_pred -----CCCcEEEecCC-CCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcc
Q 007244 77 -----KGKSVFLDRCN-LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRI 126 (611)
Q Consensus 77 -----~Gk~VIID~tn-l~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~ 126 (611)
..+.+|||... ++......+++. .+....+.+|+.-.....+..-+..|-
T Consensus 114 ~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSRC 170 (830)
T PRK07003 114 APVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRC 170 (830)
T ss_pred ccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhhe
Confidence 23568899855 444445566666 665555667776666655555555554
No 327
>PRK06921 hypothetical protein; Provisional
Probab=95.88 E-value=0.029 Score=58.37 Aligned_cols=101 Identities=14% Similarity=0.081 Sum_probs=53.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcC----CCeEEeecchhccCCCCcHHHHHHHHHHHHHCCCcEEEecCCC------
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSSA----RPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNL------ 88 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~~----~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L~~Gk~VIID~tnl------ 88 (611)
...-++|.|+||+|||+++..++..+. .....++...+........ .-.....+.+..-..+|||....
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~-~~~~~~~~~~~~~dlLiIDDl~~~~~g~e 194 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDF-DLLEAKLNRMKKVEVLFIDDLFKPVNGKP 194 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHH-HHHHHHHHHhcCCCEEEEeccccccCCCc
Confidence 345689999999999999999887643 2223333322211000000 11122334556667789999622
Q ss_pred --CHHHHHHHHHh--CCC-CCeEEEEEEeCCHHHHHH
Q 007244 89 --EREQRTDFVKL--GGP-EVDVHAVVLDLPAKLCIS 120 (611)
Q Consensus 89 --~~~~R~~~~~l--~~~-~~~v~vV~Ld~p~e~~~~ 120 (611)
+......+..+ ... .....+|--..+.+.+..
T Consensus 195 ~~t~~~~~~lf~iin~R~~~~k~tIitsn~~~~el~~ 231 (266)
T PRK06921 195 RATEWQIEQMYSVLNYRYLNHKPILISSELTIDELLD 231 (266)
T ss_pred cCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHhh
Confidence 23344445444 221 112345556677776654
No 328
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.88 E-value=0.046 Score=63.09 Aligned_cols=65 Identities=15% Similarity=0.240 Sum_probs=48.1
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHHHHHHHHHHCCCcEEE
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFL 83 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L~~Gk~VII 83 (611)
.++-|+|-||||+|||.+|.+++...+..++.+-...+-+...+..++....+..+.+.-+.+|+
T Consensus 700 ~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGaSEq~vR~lF~rA~~a~PCiL 764 (952)
T KOG0735|consen 700 LRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGASEQNVRDLFERAQSAKPCIL 764 (952)
T ss_pred cccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcccHHHHHHHHHHhhccCCeEE
Confidence 35679999999999999999999998866655656666566667666666666555665565544
No 329
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=95.86 E-value=0.09 Score=57.70 Aligned_cols=36 Identities=11% Similarity=0.184 Sum_probs=26.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHc-----CCCeEEeecchh
Q 007244 21 ILVIMVGAPGSGKSTFCEHVMRSS-----ARPWARICQDTI 56 (611)
Q Consensus 21 ~LIvLvG~PGSGKST~A~~L~~~~-----~~~~~~Is~D~i 56 (611)
..++|.|+||+|||++++.+...+ +..+..++.+.+
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~ 177 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKF 177 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHH
Confidence 458899999999999999987654 233445655443
No 330
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.85 E-value=0.017 Score=59.99 Aligned_cols=38 Identities=29% Similarity=0.542 Sum_probs=29.5
Q ss_pred cCCCcEEEEEEcCCCCcHHHHHHHHHHHcC----CCeEEeecc
Q 007244 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA----RPWARICQD 54 (611)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~----~~~~~Is~D 54 (611)
....|..|+++|+.|||||||.++|...+. .+| +|+.|
T Consensus 15 ~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppY-viNLD 56 (366)
T KOG1532|consen 15 AIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPY-VINLD 56 (366)
T ss_pred cccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCe-EEeCC
Confidence 456789999999999999999999876543 244 56654
No 331
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=95.85 E-value=0.057 Score=56.98 Aligned_cols=24 Identities=29% Similarity=0.515 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcC
Q 007244 22 LVIMVGAPGSGKSTFCEHVMRSSA 45 (611)
Q Consensus 22 LIvLvG~PGSGKST~A~~L~~~~~ 45 (611)
.++|.||||+||||+|+.+++.+.
T Consensus 38 ~lll~Gp~GtGKT~la~~~~~~l~ 61 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVRALARELY 61 (337)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Confidence 478999999999999999988764
No 332
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=95.82 E-value=0.047 Score=61.24 Aligned_cols=111 Identities=27% Similarity=0.357 Sum_probs=63.5
Q ss_pred CCcCcccCCCccCCCCcCccCCcccCCC-ccccCCCccchhc----cccccCCcccccccccccccccccccccCccccc
Q 007244 481 CNEDIRLEPSVSQDHSEDVHGNYISTGD-KIKRDGGHEYEQS----KKCKTQNEVGTDINLSRAANLSADNEKIGVSTSK 555 (611)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (611)
.-|.++.+.+.+.+.-|++..+-+++-+ ..+-+.+++.||- ||-++.-.+.. .. -+|.++.++
T Consensus 603 n~ed~~d~e~~~d~e~ees~G~s~t~~~~e~~~e~~~e~ErE~na~kKE~lr~~Fe~----ee----r~d~e~~d~---- 670 (1077)
T COG5192 603 NFEDLEDEENSSDNEMEESRGSSVTAENEESADEVDYETEREENARKKEELRGNFEL----EE----RGDPEKKDV---- 670 (1077)
T ss_pred CcccccccccccccchhhccCCcccccchhhccccchHHHhhhhhhhhhhhhcceee----hh----ccCcccccc----
Confidence 3445555556666777777788888888 8888999998886 56554222211 11 122222222
Q ss_pred chhHHHH-----HH--HHH---hcCCCCC------c----------ccceeeecc-----EEEecccccccccchhhhh
Q 007244 556 AWGSWAQ-----AL--YRT---AMYPERH------K----------DDLLEISDD-----VVVLNDLYPKMYEMNICKF 603 (611)
Q Consensus 556 ~~~~~~~-----~~--~~~---~~~~~~~------~----------~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 603 (611)
.|-.-.. -| -.+ -|-||.. + +.=||.-|. .||+--|.|--++++|.+-
T Consensus 671 dwy~~eK~ki~~ql~inr~e~e~M~Pe~r~~Ieg~raG~YVriv~~~vP~efv~~fn~r~piV~GGlLp~E~~~giVq~ 749 (1077)
T COG5192 671 DWYTEEKRKIEEQLKINRSEFETMVPESRVVIEGYRAGRYVRIVLSHVPLEFVDEFNSRYPIVLGGLLPAEKEMGIVQG 749 (1077)
T ss_pred chHHHHHHHHHHHHhhhhhhhhhcCCcceeEeecccccceEEEEeccCCHHHHhhcCCCCcEEeccccchhhhhhhhhh
Confidence 2432211 11 122 3889831 1 233443333 6899999999999998753
No 333
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.80 E-value=0.063 Score=50.34 Aligned_cols=86 Identities=17% Similarity=0.102 Sum_probs=51.3
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHcCCC--eEEeecc-hhc-cCCCC-cHHHHHHHHHHHHHCCCcEEEec--CCCCH
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARP--WARICQD-TIN-KGKSG-TKVQCLTSASSALKKGKSVFLDR--CNLER 90 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~--~~~Is~D-~i~-~~~~~-~~~~~~~~~~~~L~~Gk~VIID~--tnl~~ 90 (611)
.+..++.++|++|||||||.+.+....... -+.++.. .+. -.... -..+....++..+.....+|+|. .++..
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~lS~G~~~rv~laral~~~p~illlDEP~~~LD~ 103 (144)
T cd03221 24 NPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDL 103 (144)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCH
Confidence 456789999999999999999987754311 1112110 000 00011 11233355566666667789998 44666
Q ss_pred HHHHHHHHh-CCCC
Q 007244 91 EQRTDFVKL-GGPE 103 (611)
Q Consensus 91 ~~R~~~~~l-~~~~ 103 (611)
..+..+.++ +...
T Consensus 104 ~~~~~l~~~l~~~~ 117 (144)
T cd03221 104 ESIEALEEALKEYP 117 (144)
T ss_pred HHHHHHHHHHHHcC
Confidence 778877777 5443
No 334
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=95.78 E-value=0.0098 Score=63.53 Aligned_cols=31 Identities=32% Similarity=0.470 Sum_probs=28.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEee
Q 007244 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARIC 52 (611)
Q Consensus 22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is 52 (611)
-|+|.|+||+||||+++.+++.++.++.+|+
T Consensus 66 ~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~ 96 (327)
T TIGR01650 66 RVMVQGYHGTGKSTHIEQIAARLNWPCVRVN 96 (327)
T ss_pred cEEEEeCCCChHHHHHHHHHHHHCCCeEEEE
Confidence 4899999999999999999999998887775
No 335
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.75 E-value=0.064 Score=63.26 Aligned_cols=39 Identities=21% Similarity=0.335 Sum_probs=30.1
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHc----C-CCeEEeecchhc
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSS----A-RPWARICQDTIN 57 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~----~-~~~~~Is~D~i~ 57 (611)
.+.+|+|+||+|+||||.+.+|+..+ + .....++.|.++
T Consensus 184 ~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~R 227 (767)
T PRK14723 184 QGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFR 227 (767)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccc
Confidence 46899999999999999999988644 2 234567777765
No 336
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=95.74 E-value=0.046 Score=50.10 Aligned_cols=24 Identities=33% Similarity=0.513 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHH
Q 007244 20 QILVIMVGAPGSGKSTFCEHVMRS 43 (611)
Q Consensus 20 p~LIvLvG~PGSGKST~A~~L~~~ 43 (611)
...|+|+|++||||||+++.+...
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~ 26 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQ 26 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 346999999999999999998753
No 337
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=95.71 E-value=0.097 Score=55.79 Aligned_cols=30 Identities=13% Similarity=0.247 Sum_probs=25.7
Q ss_pred cCCCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (611)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~ 45 (611)
....+..++|.||||+||||+|+.+++.+.
T Consensus 32 ~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~ 61 (355)
T TIGR02397 32 NGRIAHAYLFSGPRGTGKTSIARIFAKALN 61 (355)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 345577899999999999999999998864
No 338
>PRK07952 DNA replication protein DnaC; Validated
Probab=95.70 E-value=0.032 Score=57.41 Aligned_cols=102 Identities=10% Similarity=0.103 Sum_probs=57.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchhccC---CCCcHHHHHHHHHHHHHCCCcEEEecCCCCH---H
Q 007244 21 ILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKG---KSGTKVQCLTSASSALKKGKSVFLDRCNLER---E 91 (611)
Q Consensus 21 ~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D~i~~~---~~~~~~~~~~~~~~~L~~Gk~VIID~tnl~~---~ 91 (611)
..++|.|+||+|||+++..++..+ +.....++..++... .+.....-...+.+.+..-..+|||...... .
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~~~dlLvIDDig~~~~s~~ 179 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLSNVDLLVIDEIGVQTESRY 179 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhccCCEEEEeCCCCCCCCHH
Confidence 478999999999999999998776 333444444333210 0000001112344556666678999854332 3
Q ss_pred HHHHHHHh--CCCC-CeEEEEEEeCCHHHHHHHH
Q 007244 92 QRTDFVKL--GGPE-VDVHAVVLDLPAKLCISRS 122 (611)
Q Consensus 92 ~R~~~~~l--~~~~-~~v~vV~Ld~p~e~~~~Rl 122 (611)
...-+..+ ..+. ...++|--..+.+.+.+++
T Consensus 180 ~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~l~~~~ 213 (244)
T PRK07952 180 EKVIINQIVDRRSSSKRPTGMLTNSNMEEMTKLL 213 (244)
T ss_pred HHHHHHHHHHHHHhCCCCEEEeCCCCHHHHHHHh
Confidence 33344444 2222 3345666677888776555
No 339
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.69 E-value=0.064 Score=53.25 Aligned_cols=28 Identities=29% Similarity=0.414 Sum_probs=24.1
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~ 45 (611)
++...++++||||+|||||.+.+.....
T Consensus 26 ~~Gef~fl~GpSGAGKSTllkLi~~~e~ 53 (223)
T COG2884 26 PKGEFVFLTGPSGAGKSTLLKLIYGEER 53 (223)
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhhhc
Confidence 5667899999999999999999887643
No 340
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=95.69 E-value=0.065 Score=56.04 Aligned_cols=22 Identities=32% Similarity=0.625 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHc
Q 007244 23 VIMVGAPGSGKSTFCEHVMRSS 44 (611)
Q Consensus 23 IvLvG~PGSGKST~A~~L~~~~ 44 (611)
++|.|+||+||||+++.+++.+
T Consensus 41 ~ll~G~~G~GKt~~~~~l~~~l 62 (319)
T PRK00440 41 LLFAGPPGTGKTTAALALAREL 62 (319)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6999999999999999998875
No 341
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=95.69 E-value=0.054 Score=62.99 Aligned_cols=110 Identities=16% Similarity=0.190 Sum_probs=61.2
Q ss_pred cCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeE---------Eee--------cchhc-cCC-CCcHHHHH---HHHHH
Q 007244 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWA---------RIC--------QDTIN-KGK-SGTKVQCL---TSASS 73 (611)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~---------~Is--------~D~i~-~~~-~~~~~~~~---~~~~~ 73 (611)
.+..+..++|.|++|+||||+|+.+++.++.... ..+ .|.+. +.. ....+++. +.+..
T Consensus 34 ~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~ieidaas~~~VddiR~li~~~~~ 113 (647)
T PRK07994 34 LGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDLIEIDAASRTKVEDTRELLDNVQY 113 (647)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCceeecccccCCHHHHHHHHHHHHh
Confidence 4566788999999999999999999998763110 000 01110 111 01112222 22211
Q ss_pred HHHCC--CcEEEecCC-CCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhc
Q 007244 74 ALKKG--KSVFLDRCN-LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKR 125 (611)
Q Consensus 74 ~L~~G--k~VIID~tn-l~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R 125 (611)
.-..| +.+|||... ++...-..+++. .+.+..+.+|+.....+.+..-++.|
T Consensus 114 ~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~SR 169 (647)
T PRK07994 114 APARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 (647)
T ss_pred hhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHHhh
Confidence 11223 468999855 555566677777 77666666777655554444444444
No 342
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.68 E-value=0.11 Score=52.46 Aligned_cols=36 Identities=19% Similarity=0.326 Sum_probs=27.0
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHc----CCCeEEeec
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSS----ARPWARICQ 53 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~----~~~~~~Is~ 53 (611)
.+..+++|.|+||+|||+|+..++... +.+...++.
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~ 50 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSL 50 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeC
Confidence 456799999999999999999876532 445555653
No 343
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=95.65 E-value=0.1 Score=52.64 Aligned_cols=22 Identities=18% Similarity=0.445 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 007244 22 LVIMVGAPGSGKSTFCEHVMRS 43 (611)
Q Consensus 22 LIvLvG~PGSGKST~A~~L~~~ 43 (611)
-++|.|++|+|||++.+.+..+
T Consensus 36 ~l~l~G~~G~GKTHLL~Ai~~~ 57 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHLLQAIANE 57 (219)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHH
Confidence 3689999999999999998654
No 344
>PF05729 NACHT: NACHT domain
Probab=95.65 E-value=0.0088 Score=55.72 Aligned_cols=25 Identities=36% Similarity=0.574 Sum_probs=21.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244 21 ILVIMVGAPGSGKSTFCEHVMRSSA 45 (611)
Q Consensus 21 ~LIvLvG~PGSGKST~A~~L~~~~~ 45 (611)
.+++|.|.||+||||+++.++..+.
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~ 25 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLA 25 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHH
Confidence 3789999999999999999886543
No 345
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=95.64 E-value=0.093 Score=51.08 Aligned_cols=30 Identities=17% Similarity=0.217 Sum_probs=25.9
Q ss_pred cCCCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (611)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~ 45 (611)
.+..+..++|.|++|+||||+|+.+++.+.
T Consensus 10 ~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~ 39 (188)
T TIGR00678 10 KGRLAHAYLFAGPEGVGKELLALALAKALL 39 (188)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHc
Confidence 445678899999999999999999988754
No 346
>KOG4235 consensus Mitochondrial thymidine kinase 2/deoxyguanosine kinase [Nucleotide transport and metabolism]
Probab=95.64 E-value=0.09 Score=52.21 Aligned_cols=38 Identities=16% Similarity=0.239 Sum_probs=28.7
Q ss_pred EEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhh
Q 007244 107 HAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQK 147 (611)
Q Consensus 107 ~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~ 147 (611)
-+|||.++.++|.+|+.+|.+.+ +..+|-+-+..+...
T Consensus 156 giIYLrasPetc~~Ri~~R~R~E---E~gipL~YLe~LH~~ 193 (244)
T KOG4235|consen 156 GIIYLRASPETCYKRIYLRAREE---EKGIPLKYLEALHEL 193 (244)
T ss_pred eEEEeecChHHHHHHHHHHhhhh---hcCCcHHHHHHHHHH
Confidence 58999999999999999998753 225676666665544
No 347
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=95.63 E-value=0.032 Score=58.87 Aligned_cols=60 Identities=12% Similarity=0.218 Sum_probs=46.0
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHHHHHHHHHH
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALK 76 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L~ 76 (611)
-..|..+.|.||||.|||-+|+.++...+..+..++.-.+..+..++..+++...-+..+
T Consensus 163 Ik~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiGEsaRlIRemf~yA~ 222 (388)
T KOG0651|consen 163 IKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIGESARLIRDMFRYAR 222 (388)
T ss_pred CCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhcccHHHHHHHHHHHHh
Confidence 356889999999999999999999999997776677777777777776655544333333
No 348
>KOG0609 consensus Calcium/calmodulin-dependent serine protein kinase/membrane-associated guanylate kinase [Signal transduction mechanisms]
Probab=95.62 E-value=0.12 Score=57.92 Aligned_cols=143 Identities=13% Similarity=0.181 Sum_probs=83.6
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHcCC---------------------CeEEeecchh----ccCCCC---cHHH-H-
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSSAR---------------------PWARICQDTI----NKGKSG---TKVQ-C- 67 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~---------------------~~~~Is~D~i----~~~~~~---~~~~-~- 67 (611)
-++..+||+|+.|.|---+-++|....+. .|..++...+ +.+.+. +.+. +
T Consensus 338 ~~rrtlVLiGa~GvGr~elk~~Li~~~p~~f~~~VPhTtR~~r~~E~dG~eY~FVSk~~~e~dI~~~~~lE~GEy~~nlY 417 (542)
T KOG0609|consen 338 FRRRTLVLIGAQGVGRRELKNKLIELNPDRFGTAVPHTTRPPRSDEVDGVEYHFVSKEEMEADIRAGKFLEYGEYEGNLY 417 (542)
T ss_pred cccceEEEECCcccchHHHHHHHHhhCccccccCCCCcCCCCCCCCCCCccceeeehHHHhhhhhcCCceecCcchhccc
Confidence 55689999999999999999998876432 1222332222 223322 2221 2
Q ss_pred ---HHHHHHHHHCCCcEEEecCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHH
Q 007244 68 ---LTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRM 144 (611)
Q Consensus 68 ---~~~~~~~L~~Gk~VIID~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm 144 (611)
++.++..+..|+.+|+|. ..+.+-.++...+...+||+.+|.-.++++.++-....+.-.....++-+.+|
T Consensus 418 GTs~dsVr~v~~~gKicvLdv------~Pqalk~lRt~Ef~PyVIFI~pP~~~~~r~~r~~~~~~~~~~~~~~d~~Lq~i 491 (542)
T KOG0609|consen 418 GTSLDSVRNVIASGKICVLDV------EPQALKVLRTAEFKPYVIFIAPPSLEELRALRKVAVMSTIVAKQFTDEDLQEI 491 (542)
T ss_pred cchHHHHHHHHHhCCEEEEec------CHHHhhhhhhhcccceEEEecCCCchhHHHHhhhccccccccccCCHHHHHHH
Confidence 278889999999999999 23332222445555568888877766555543322211111112445555555
Q ss_pred Hhh--ccCCCccCCccEEEEcCCh
Q 007244 145 LQK--KELPKLSEGFSRITLCQNE 166 (611)
Q Consensus 145 ~~~--~e~P~~~EgFd~V~vv~~~ 166 (611)
.+. ..+-.+.--||-++++++-
T Consensus 492 ~~eS~~ie~~yghyfD~iIvN~dl 515 (542)
T KOG0609|consen 492 IDESARIEQQYGHYFDLIIVNSDL 515 (542)
T ss_pred HHHHHHHHHHhhhheeEEEEcCcH
Confidence 543 2334445668888888753
No 349
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.62 E-value=0.0091 Score=56.75 Aligned_cols=22 Identities=27% Similarity=0.661 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcC
Q 007244 23 VIMVGAPGSGKSTFCEHVMRSSA 45 (611)
Q Consensus 23 IvLvG~PGSGKST~A~~L~~~~~ 45 (611)
|+|+|.||+||||+++.|++. +
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g 23 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-G 23 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T
T ss_pred EEEECCCCCCHHHHHHHHHHc-C
Confidence 789999999999999999988 6
No 350
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=95.60 E-value=0.13 Score=57.41 Aligned_cols=35 Identities=14% Similarity=0.288 Sum_probs=25.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchh
Q 007244 22 LVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTI 56 (611)
Q Consensus 22 LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D~i 56 (611)
-++|.|+||+|||++++.+...+ +.....++.+.+
T Consensus 143 pl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f 180 (445)
T PRK12422 143 PIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELF 180 (445)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHH
Confidence 47889999999999999988754 333444554433
No 351
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.60 E-value=0.12 Score=57.75 Aligned_cols=24 Identities=17% Similarity=0.227 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHc
Q 007244 21 ILVIMVGAPGSGKSTFCEHVMRSS 44 (611)
Q Consensus 21 ~LIvLvG~PGSGKST~A~~L~~~~ 44 (611)
.-++|.|+||+|||++++.+....
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~ 172 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYI 172 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 348999999999999999998765
No 352
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=95.59 E-value=0.11 Score=52.20 Aligned_cols=35 Identities=17% Similarity=0.288 Sum_probs=25.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeec
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQ 53 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~ 53 (611)
....++|.|+||+|||++++.+.... +..+..++.
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~ 78 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDA 78 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeh
Confidence 34568999999999999999998764 233444543
No 353
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=95.57 E-value=0.014 Score=59.13 Aligned_cols=25 Identities=24% Similarity=0.430 Sum_probs=21.9
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHH
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVM 41 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~ 41 (611)
+..|.++++.|+||+||||+|+.+.
T Consensus 9 ~~~~~~~liyG~~G~GKtt~a~~~~ 33 (220)
T TIGR01618 9 KRIPNMYLIYGKPGTGKTSTIKYLP 33 (220)
T ss_pred CCCCcEEEEECCCCCCHHHHHHhcC
Confidence 4457889999999999999999885
No 354
>PRK08181 transposase; Validated
Probab=95.56 E-value=0.031 Score=58.28 Aligned_cols=103 Identities=16% Similarity=0.103 Sum_probs=56.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchhccCCCCcH-HHHHHHHHHHHHCCCcEEEecCC---CCHHH
Q 007244 20 QILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGKSGTK-VQCLTSASSALKKGKSVFLDRCN---LEREQ 92 (611)
Q Consensus 20 p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D~i~~~~~~~~-~~~~~~~~~~L~~Gk~VIID~tn---l~~~~ 92 (611)
..-++|+|+||+|||+++..+.... +.....++...+........ ..-.....+.+..-..+|||... .....
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~~~dLLIIDDlg~~~~~~~~ 185 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLDKFDLLILDDLAYVTKDQAE 185 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHhcCCEEEEeccccccCCHHH
Confidence 3459999999999999999987643 32333344333321100000 00112334455666778999854 33444
Q ss_pred HHHHHHh--CCCCCeEEEEEEeCCHHHHHHHH
Q 007244 93 RTDFVKL--GGPEVDVHAVVLDLPAKLCISRS 122 (611)
Q Consensus 93 R~~~~~l--~~~~~~v~vV~Ld~p~e~~~~Rl 122 (611)
...+..+ ..+.-...+|--..+...+..++
T Consensus 186 ~~~Lf~lin~R~~~~s~IiTSN~~~~~w~~~~ 217 (269)
T PRK08181 186 TSVLFELISARYERRSILITANQPFGEWNRVF 217 (269)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCCHHHHHHhc
Confidence 4555555 22222344556677777766655
No 355
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=95.55 E-value=0.023 Score=53.76 Aligned_cols=78 Identities=15% Similarity=0.258 Sum_probs=41.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCC----CeEEeecchhc-cCCCCcHHHHHHHHHHHHHCCCc--EEEecCCCCHHHHH
Q 007244 22 LVIMVGAPGSGKSTFCEHVMRSSAR----PWARICQDTIN-KGKSGTKVQCLTSASSALKKGKS--VFLDRCNLEREQRT 94 (611)
Q Consensus 22 LIvLvG~PGSGKST~A~~L~~~~~~----~~~~Is~D~i~-~~~~~~~~~~~~~~~~~L~~Gk~--VIID~tnl~~~~R~ 94 (611)
-|+|+|++|||||||++.|...... +.+....+.|. .|++.+...++..+......-.. .+.|++.......-
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~~~KTq~i~~~~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~dat~~~~~~pP 82 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIRYKKTQAIEYYDNTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDATEPRSVFPP 82 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCCcCccceeEecccEEECChhheeCHHHHHHHHHHHhhCCEEEEEecCCCCCccCCc
Confidence 3899999999999999999764321 11111112221 34555544444444333333332 45666544333444
Q ss_pred HHHHh
Q 007244 95 DFVKL 99 (611)
Q Consensus 95 ~~~~l 99 (611)
.+...
T Consensus 83 ~fa~~ 87 (143)
T PF10662_consen 83 GFASM 87 (143)
T ss_pred hhhcc
Confidence 44443
No 356
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=95.54 E-value=0.022 Score=61.69 Aligned_cols=45 Identities=18% Similarity=0.422 Sum_probs=33.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcC--CCeEEeecchhccCCCCcH
Q 007244 20 QILVIMVGAPGSGKSTFCEHVMRSSA--RPWARICQDTINKGKSGTK 64 (611)
Q Consensus 20 p~LIvLvG~PGSGKST~A~~L~~~~~--~~~~~Is~D~i~~~~~~~~ 64 (611)
...|+|.||||+|||.+|-.++++++ .||..++.-.++..+..-.
T Consensus 50 Gr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS~e~kKT 96 (398)
T PF06068_consen 50 GRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYSSEVKKT 96 (398)
T ss_dssp T-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-BTTC-HH
T ss_pred CcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeeecccCch
Confidence 57899999999999999999999998 5788888877765554433
No 357
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.53 E-value=0.029 Score=57.06 Aligned_cols=63 Identities=22% Similarity=0.351 Sum_probs=39.7
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHH---cCCCeEEeecchhccCCCCcHHHHHH-------HHHHHHHCCCcEEEecC
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRS---SARPWARICQDTINKGKSGTKVQCLT-------SASSALKKGKSVFLDRC 86 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~---~~~~~~~Is~D~i~~~~~~~~~~~~~-------~~~~~L~~Gk~VIID~t 86 (611)
-++..++++.|+||||||+||.+++.. .+.....++.+.- ..++.+ .+......|...++|..
T Consensus 18 ~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~-------~~~i~~~~~~~g~~~~~~~~~g~l~~~d~~ 90 (237)
T TIGR03877 18 IPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEH-------PVQVRRNMAQFGWDVRKYEEEGKFAIVDAF 90 (237)
T ss_pred CcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCC-------HHHHHHHHHHhCCCHHHHhhcCCEEEEecc
Confidence 356789999999999999999986543 2444445554321 111111 12345566777888873
No 358
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=95.52 E-value=0.01 Score=56.62 Aligned_cols=30 Identities=20% Similarity=0.363 Sum_probs=19.5
Q ss_pred cCCCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (611)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~ 45 (611)
....+.+++|.|++|+||||+.+++...+.
T Consensus 20 ~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~ 49 (185)
T PF13191_consen 20 QSGSPRNLLLTGESGSGKTSLLRALLDRLA 49 (185)
T ss_dssp SS-----EEE-B-TTSSHHHHHHHHHHHHH
T ss_pred HcCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 456678999999999999999999876544
No 359
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=95.51 E-value=0.022 Score=55.32 Aligned_cols=38 Identities=18% Similarity=0.295 Sum_probs=30.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCC----CeEEeecchhcc
Q 007244 21 ILVIMVGAPGSGKSTFCEHVMRSSAR----PWARICQDTINK 58 (611)
Q Consensus 21 ~LIvLvG~PGSGKST~A~~L~~~~~~----~~~~Is~D~i~~ 58 (611)
..++|+||+|+|||.+|+.+++.+.. ++.+++.-.+..
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~ 45 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSE 45 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccc
Confidence 57899999999999999999998873 566666555543
No 360
>PF13245 AAA_19: Part of AAA domain
Probab=95.51 E-value=0.012 Score=49.49 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=17.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHH
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMR 42 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~ 42 (611)
...++++.|+|||||||++..+..
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~ 32 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIA 32 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHH
Confidence 345788899999999965555444
No 361
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.51 E-value=0.03 Score=56.19 Aligned_cols=25 Identities=36% Similarity=0.749 Sum_probs=21.8
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHH
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMR 42 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~ 42 (611)
+...++++.|+||+|||||+.+++.
T Consensus 18 ~~G~~~~i~G~~G~GKT~l~~~~~~ 42 (229)
T TIGR03881 18 PRGFFVAVTGEPGTGKTIFCLHFAY 42 (229)
T ss_pred cCCeEEEEECCCCCChHHHHHHHHH
Confidence 4578999999999999999998654
No 362
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.48 E-value=0.014 Score=56.97 Aligned_cols=28 Identities=18% Similarity=0.271 Sum_probs=24.1
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~ 45 (611)
.++.++.++|++||||||+++++...+.
T Consensus 4 ~~~~ii~ivG~sgsGKTTLi~~li~~l~ 31 (173)
T PRK10751 4 TMIPLLAIAAWSGTGKTTLLKKLIPALC 31 (173)
T ss_pred CCceEEEEECCCCChHHHHHHHHHHHHh
Confidence 3556899999999999999999987764
No 363
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=95.47 E-value=0.025 Score=60.66 Aligned_cols=57 Identities=19% Similarity=0.309 Sum_probs=43.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcC--CCeEEeecchhccCCCCcHHHHHHHHHHHH
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSSA--RPWARICQDTINKGKSGTKVQCLTSASSAL 75 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~~--~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L 75 (611)
...-|+|+||||+|||.+|-.+++++| .||+.++.-.++..+....+.+.+.+++++
T Consensus 64 aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiYS~E~kKTE~L~qa~RraI 122 (450)
T COG1224 64 AGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYSLEVKKTEALTQALRRAI 122 (450)
T ss_pred cccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeeccceeeeecccHHHHHHHHHHHhh
Confidence 357899999999999999999999998 478888877776655554444445555444
No 364
>TIGR03709 PPK2_rel_1 polyphosphate:nucleotide phosphotransferase, PPK2 family. Members of this protein family belong to the polyphosphate kinase 2 (PPK2) family, which is not related in sequence to PPK1. While PPK1 tends to act in the biosynthesis of polyphosphate, or poly(P), members of the PPK2 family tend to use the terminal phosphate of poly(P) to regenerate ATP or GTP from the corresponding nucleoside diphosphate, or ADP from AMP as is the case with polyphosphate:AMP phosphotransferase (PAP). Members of this protein family most likely transfer the terminal phosphate between poly(P) and some nucleotide, but it is not clear which.
Probab=95.45 E-value=0.12 Score=53.72 Aligned_cols=110 Identities=15% Similarity=0.217 Sum_probs=71.3
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh-ccCCCCcHHHHHHHHHHHH-HCCCcEEEecCCCCHHH---
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-NKGKSGTKVQCLTSASSAL-KKGKSVFLDRCNLEREQ--- 92 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i-~~~~~~~~~~~~~~~~~~L-~~Gk~VIID~tnl~~~~--- 92 (611)
..|.||||-|.-||||...+++|.+.++...+.+-.-.- ...+. .. ..+-..-+.| ..|...|+|+..+...-
T Consensus 54 ~~~vlIv~eG~DaAGKG~~I~~l~~~lDPRg~~V~s~~~Pt~eE~-~~-p~lWRfw~~lP~~G~i~IF~RSWY~~vl~~r 131 (264)
T TIGR03709 54 RRSLLLVLQAMDAAGKDGTIRHVMSGVNPQGCQVTSFKAPSAEEL-DH-DFLWRIHKALPERGEIGIFNRSHYEDVLVVR 131 (264)
T ss_pred CCcEEEEEECCCCCCchHHHHHHHHhcCCCeeEEEeCCCCCHHHH-cC-chHHHHHHhCCCCCeEEEEcCccccchhhhh
Confidence 469999999999999999999999998866544432000 00000 00 0111122222 46777788876555421
Q ss_pred ----------HHH------HHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccccc
Q 007244 93 ----------RTD------FVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHE 129 (611)
Q Consensus 93 ----------R~~------~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~ 129 (611)
... |-+. ...|+.++-+||.++.++..+|+.+|...+
T Consensus 132 v~g~~~~~~~~~~~~~I~~FEr~L~~~G~~IiKffLhIsk~eQ~kRl~~r~~~p 185 (264)
T TIGR03709 132 VHGLIPKAIWERRYEDINDFERYLTENGTTILKFFLHISKEEQKKRFLARLDDP 185 (264)
T ss_pred hcCCCCHHHHHHHHHHHHHHHHHHHHCCcEEEEEEEeCCHHHHHHHHHHHhcCC
Confidence 111 2223 567888999999999999999999997654
No 365
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=95.44 E-value=0.013 Score=64.73 Aligned_cols=36 Identities=25% Similarity=0.451 Sum_probs=30.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh
Q 007244 21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (611)
Q Consensus 21 ~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i 56 (611)
.-|+|.||||+|||++|+.+++.++.+|+.++...+
T Consensus 109 ~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l 144 (412)
T PRK05342 109 SNILLIGPTGSGKTLLAQTLARILDVPFAIADATTL 144 (412)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 458999999999999999999999888877765444
No 366
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.44 E-value=0.019 Score=61.68 Aligned_cols=53 Identities=11% Similarity=0.280 Sum_probs=42.0
Q ss_pred cCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHH
Q 007244 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCL 68 (611)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~ 68 (611)
.-.+|.-|+|.||||+|||-+|++++++.+..+.-|+.-.+-..|+++.....
T Consensus 123 Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KWfgE~eKlv 175 (386)
T KOG0737|consen 123 LLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKWFGEAQKLV 175 (386)
T ss_pred cccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchhhHHHHHHHH
Confidence 34578889999999999999999999999987866666666667776655443
No 367
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=95.43 E-value=0.11 Score=59.98 Aligned_cols=112 Identities=13% Similarity=0.118 Sum_probs=60.9
Q ss_pred cCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCC-eEE--ee--------------cchhc-cC-CCCcHHHHH---HHHHH
Q 007244 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARP-WAR--IC--------------QDTIN-KG-KSGTKVQCL---TSASS 73 (611)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~-~~~--Is--------------~D~i~-~~-~~~~~~~~~---~~~~~ 73 (611)
....+.-+++.||+|+||||+|+.+++.+... +.. .+ .|.+. ++ .....+++. ..+..
T Consensus 34 ~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~DiieIdaas~igVd~IReIi~~~~~ 113 (605)
T PRK05896 34 NNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDIVELDAASNNGVDEIRNIIDNINY 113 (605)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCceEEeccccccCHHHHHHHHHHHHh
Confidence 34557789999999999999999999886521 100 00 01111 11 001111121 11111
Q ss_pred --HHHCCCcEEEecCC-CCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244 74 --ALKKGKSVFLDRCN-LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (611)
Q Consensus 74 --~L~~Gk~VIID~tn-l~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~ 127 (611)
.....+.+|||... ++......+++. .+.+..+.+|++....+.+...+..|..
T Consensus 114 ~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~SRcq 171 (605)
T PRK05896 114 LPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTIISRCQ 171 (605)
T ss_pred chhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHHhhhh
Confidence 11123568888743 444555667776 6555556666666666656555666654
No 368
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.42 E-value=0.042 Score=53.74 Aligned_cols=82 Identities=18% Similarity=0.129 Sum_probs=49.0
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHcCC--CeEEeecchhc---cCCCCcH--HHHHHHHHHHHHCCCcEEEec--CCC
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSSAR--PWARICQDTIN---KGKSGTK--VQCLTSASSALKKGKSVFLDR--CNL 88 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~--~~~~Is~D~i~---~~~~~~~--~~~~~~~~~~L~~Gk~VIID~--tnl 88 (611)
++..++.|+|++||||||+.+.++..... ..+.++...+. +...... .+....++..+.....+++|. .++
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDEPts~L 102 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPSAYL 102 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccC
Confidence 45678999999999999999998764331 12223211111 1110111 233455566666777789988 346
Q ss_pred CHHHHHHHHHh
Q 007244 89 EREQRTDFVKL 99 (611)
Q Consensus 89 ~~~~R~~~~~l 99 (611)
....+..+.++
T Consensus 103 D~~~~~~l~~~ 113 (177)
T cd03222 103 DIEQRLNAARA 113 (177)
T ss_pred CHHHHHHHHHH
Confidence 66666666555
No 369
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=95.40 E-value=0.022 Score=51.38 Aligned_cols=23 Identities=22% Similarity=0.507 Sum_probs=20.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHH
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVM 41 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~ 41 (611)
...+++|+|++||||||+++.+.
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh
Confidence 35789999999999999999987
No 370
>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase. Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).
Probab=95.37 E-value=0.13 Score=58.11 Aligned_cols=112 Identities=13% Similarity=0.034 Sum_probs=72.3
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh-ccCCCCcHHHHHHHHHHHH-HCCCcEEEecCCCCHHH--
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-NKGKSGTKVQCLTSASSAL-KKGKSVFLDRCNLEREQ-- 92 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i-~~~~~~~~~~~~~~~~~~L-~~Gk~VIID~tnl~~~~-- 92 (611)
.+.|.||+|-|.-||||++..+++.+.++...+.+..-.. ...+.. . ..+-..-+.| ..|..+|+|...+...-
T Consensus 37 ~~~~vlIv~eG~DaaGKg~~I~~l~~~ldprg~~v~~~~~P~~eE~~-~-~flwRfw~~lP~~G~I~IFdRSWY~~vlve 114 (493)
T TIGR03708 37 AGFPVIILIEGWDGAGKGETINLLNEWMDPRGIETHAFGRPSDEERE-R-PPMWRFWRRLPPKGKIGIFFGSWYTRPLIE 114 (493)
T ss_pred cCCeEEEEEeCCCCCChHHHHHHHHHHhCcCccEEEeCCCCCHHHhc-C-cHHHHHHHhCCCCCeEEEEcCcccchhhHH
Confidence 4679999999999999999999999988855433321000 000000 0 0111222222 45777788876655422
Q ss_pred -----------HHH------HHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccC
Q 007244 93 -----------RTD------FVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEG 130 (611)
Q Consensus 93 -----------R~~------~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g 130 (611)
... |-+. ...|+.++-+||.++.++..+|+..|...+.
T Consensus 115 rv~g~~~~~~~~~~~~~I~~FE~~L~~~G~~IlKffLhIsk~EQ~kRl~~r~~~P~ 170 (493)
T TIGR03708 115 RLEGRIDEAKLDSHIEDINRFERMLADDGALILKFWLHLSKKQQKERLKKLEKDPE 170 (493)
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHhcCCc
Confidence 111 2233 6778889999999999999999999987553
No 371
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=95.35 E-value=0.013 Score=69.98 Aligned_cols=34 Identities=21% Similarity=0.436 Sum_probs=29.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh
Q 007244 21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (611)
Q Consensus 21 ~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i 56 (611)
.+|.+-|||||||||+|+.|++.++ +.+++.+.+
T Consensus 35 ~~i~idG~~gsGKst~~~~la~~l~--~~~~~~g~~ 68 (863)
T PRK12269 35 VIIALDGPAGSGKSSVCRLLASRLG--AQCLNTGSF 68 (863)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC--CcEEeHHHH
Confidence 6899999999999999999999999 445776655
No 372
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.34 E-value=0.06 Score=59.75 Aligned_cols=38 Identities=29% Similarity=0.307 Sum_probs=29.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHc-----CCCeEEeecchhc
Q 007244 20 QILVIMVGAPGSGKSTFCEHVMRSS-----ARPWARICQDTIN 57 (611)
Q Consensus 20 p~LIvLvG~PGSGKST~A~~L~~~~-----~~~~~~Is~D~i~ 57 (611)
+.+++|+||+|+||||++.+|+..+ +.....|+.|.++
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r 263 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYR 263 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccH
Confidence 4689999999999999999887543 2345677887754
No 373
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.34 E-value=0.017 Score=53.30 Aligned_cols=23 Identities=30% Similarity=0.582 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHc
Q 007244 22 LVIMVGAPGSGKSTFCEHVMRSS 44 (611)
Q Consensus 22 LIvLvG~PGSGKST~A~~L~~~~ 44 (611)
++++.|+||+||||++..++...
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~ 23 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI 23 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH
Confidence 47899999999999999997765
No 374
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.33 E-value=0.042 Score=58.99 Aligned_cols=102 Identities=9% Similarity=0.114 Sum_probs=56.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchhccCC----CCcHHHHHHHHHHHHHCCCcEEEecCC---CC
Q 007244 20 QILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGK----SGTKVQCLTSASSALKKGKSVFLDRCN---LE 89 (611)
Q Consensus 20 p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D~i~~~~----~~~~~~~~~~~~~~L~~Gk~VIID~tn---l~ 89 (611)
..-++|.|+||+|||+++..++..+ +..+..++.+.+.... +...... ....+.+..-..+|||... .+
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~-~~~~~~l~~~DLLIIDDlG~e~~t 261 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKEL-EEVYDLLINCDLLIIDDLGTEKIT 261 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhH-HHHHHHhccCCEEEEeccCCCCCC
Confidence 3669999999999999999998764 2233344443332110 0000011 1113555555678999853 33
Q ss_pred HHHHHHHHHh--CCC-CCeEEEEEEeCCHHHHHHHH
Q 007244 90 REQRTDFVKL--GGP-EVDVHAVVLDLPAKLCISRS 122 (611)
Q Consensus 90 ~~~R~~~~~l--~~~-~~~v~vV~Ld~p~e~~~~Rl 122 (611)
......+..+ ... .-..++|--..+.+.+..+.
T Consensus 262 ~~~~~~Lf~iin~R~~~~k~tIiTSNl~~~el~~~~ 297 (329)
T PRK06835 262 EFSKSELFNLINKRLLRQKKMIISTNLSLEELLKTY 297 (329)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHH
Confidence 4555555555 221 12234566677777766554
No 375
>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A.
Probab=95.32 E-value=0.16 Score=49.53 Aligned_cols=96 Identities=15% Similarity=0.204 Sum_probs=53.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhcc---------------CCC---------------------Cc-H
Q 007244 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK---------------GKS---------------------GT-K 64 (611)
Q Consensus 22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~---------------~~~---------------------~~-~ 64 (611)
+|-+.|..|||++|+|++|++.++.++ ++.+.+.. ++. .. .
T Consensus 1 IITIsr~~Gsgg~~Ia~~LA~~Lg~~~--~d~~ii~~~a~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (179)
T PF13189_consen 1 IITISRQYGSGGREIAERLAEKLGYPY--YDREIIEEAAKESGISEEEFEEFDEKKPFNSFLYDFFRGMFPGSFEDHPDD 78 (179)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHCT--E--E-HHHHHHCT------------SS-HHH--HH---HHS-------------
T ss_pred CEEECCCCCCChHHHHHHHHHHcCCcc--CCHHHHHHHHHHccCCHHHHHHHhccccCcchhhhhhccccccccccccHH
Confidence 688999999999999999999999544 66544410 000 00 0
Q ss_pred HHHH---HHHHHHHHCCCcEEEecCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244 65 VQCL---TSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (611)
Q Consensus 65 ~~~~---~~~~~~L~~Gk~VIID~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~ 127 (611)
..++ ..+...+....++||-+ |-.-.-++..+ .+.-|++..|.+...+|+.+|..
T Consensus 79 ~~~~~~~~~~i~~la~~~~~Vi~G-------R~a~~il~~~~-~~l~V~i~A~~~~Rv~ri~~~~~ 136 (179)
T PF13189_consen 79 DKIFRAQSEIIRELAAKGNCVIVG-------RCANYILRDIP-NVLHVFIYAPLEFRVERIMEREG 136 (179)
T ss_dssp -HHHHHHHHHHHHHHH---EEEES-------TTHHHHTTT-T-TEEEEEEEE-HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhccCCEEEEe-------cCHhhhhCCCC-CeEEEEEECCHHHHHHHHHHHcC
Confidence 1111 23334444444666666 22221124433 35567788999999999999964
No 376
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.31 E-value=0.1 Score=59.58 Aligned_cols=30 Identities=20% Similarity=0.339 Sum_probs=26.5
Q ss_pred cCCCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (611)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~ 45 (611)
....+..++|.||||+||||+|+.+++.++
T Consensus 34 ~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 63 (527)
T PRK14969 34 QQRLHHAYLFTGTRGVGKTTLARILAKSLN 63 (527)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 456678899999999999999999999875
No 377
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.30 E-value=0.089 Score=59.70 Aligned_cols=40 Identities=25% Similarity=0.324 Sum_probs=30.3
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHc-----CCCeEEeecchhc
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSS-----ARPWARICQDTIN 57 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~-----~~~~~~Is~D~i~ 57 (611)
..+.+|+|+|++|+||||++.+|+..+ +.....++.|.++
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyR 392 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQR 392 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEeccccc
Confidence 346789999999999999999987643 2235567777765
No 378
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.29 E-value=0.028 Score=62.97 Aligned_cols=39 Identities=23% Similarity=0.352 Sum_probs=32.9
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecch
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDT 55 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~ 55 (611)
.+-|+=|+|+||||.|||-+|++++.+.+.+|++.+.-.
T Consensus 334 GKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSE 372 (752)
T KOG0734|consen 334 GKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSE 372 (752)
T ss_pred CcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccc
Confidence 455888999999999999999999999998886665433
No 379
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=95.29 E-value=0.015 Score=59.50 Aligned_cols=28 Identities=18% Similarity=0.490 Sum_probs=24.4
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~ 45 (611)
..+.+++|+|++||||||+++.+...+.
T Consensus 41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 41 QREGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 3456899999999999999999998865
No 380
>PRK06526 transposase; Provisional
Probab=95.28 E-value=0.036 Score=57.29 Aligned_cols=119 Identities=16% Similarity=0.113 Sum_probs=59.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchhccCCCCcH-HHHHHHHHHHHHCCCcEEEecCCCC---HH
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGKSGTK-VQCLTSASSALKKGKSVFLDRCNLE---RE 91 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D~i~~~~~~~~-~~~~~~~~~~L~~Gk~VIID~tnl~---~~ 91 (611)
.+.-++|+||||+|||++|..+.... +.....++...+.+...... ..-.......+..-..+|||...+. ..
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l~~~dlLIIDD~g~~~~~~~ 176 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKLGRYPLLIVDEVGYIPFEPE 176 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHhccCCEEEEcccccCCCCHH
Confidence 34568999999999999999987653 22221122221110000000 0000111223334456899996543 44
Q ss_pred HHHHHHHh--CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHh
Q 007244 92 QRTDFVKL--GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQ 146 (611)
Q Consensus 92 ~R~~~~~l--~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~ 146 (611)
....+..+ ..+.-..+++.-..|...+.+....+ -....++.|+..
T Consensus 177 ~~~~L~~li~~r~~~~s~IitSn~~~~~w~~~~~d~---------~~a~ai~dRl~~ 224 (254)
T PRK06526 177 AANLFFQLVSSRYERASLIVTSNKPFGRWGEVFGDD---------VVAAAMIDRLVH 224 (254)
T ss_pred HHHHHHHHHHHHHhcCCEEEEcCCCHHHHHHHcCCh---------HHHHHHHHHHhc
Confidence 44444444 22222235666677877766544221 134556666654
No 381
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=95.26 E-value=0.094 Score=53.87 Aligned_cols=29 Identities=21% Similarity=0.413 Sum_probs=24.5
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHcCC
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSSAR 46 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~ 46 (611)
+.|.-++++|++||||||++..++..+..
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~~~~~ 39 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLYYLRH 39 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhhcc
Confidence 45667899999999999999999887654
No 382
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=95.25 E-value=0.013 Score=58.76 Aligned_cols=37 Identities=24% Similarity=0.348 Sum_probs=26.8
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHHc----CCCeEEeec
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRSS----ARPWARICQ 53 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~----~~~~~~Is~ 53 (611)
-+++.++++.|+||||||+|+.+++... +.....++.
T Consensus 16 ip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ 56 (226)
T PF06745_consen 16 IPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSF 56 (226)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEES
T ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEe
Confidence 3567899999999999999999876432 555555554
No 383
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.24 E-value=0.015 Score=54.06 Aligned_cols=29 Identities=38% Similarity=0.692 Sum_probs=22.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcCCCeEEe
Q 007244 23 VIMVGAPGSGKSTFCEHVMRSSARPWARI 51 (611)
Q Consensus 23 IvLvG~PGSGKST~A~~L~~~~~~~~~~I 51 (611)
|+|.|+||.||||+++.+++..+..+.+|
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~RI 30 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKRI 30 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEEE
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeEE
Confidence 78999999999999999999999777766
No 384
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=95.23 E-value=0.022 Score=52.55 Aligned_cols=29 Identities=24% Similarity=0.407 Sum_probs=25.5
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~ 45 (611)
-+...+|+|.|.-|||||||++.+++.++
T Consensus 12 l~~g~vi~L~GdLGaGKTtf~r~l~~~lg 40 (123)
T PF02367_consen 12 LKPGDVILLSGDLGAGKTTFVRGLARALG 40 (123)
T ss_dssp HSS-EEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 35568999999999999999999999887
No 385
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.20 E-value=0.14 Score=58.99 Aligned_cols=111 Identities=14% Similarity=0.166 Sum_probs=63.4
Q ss_pred cCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeE---------Eee--------cchhc-cCC-CCcHHHHHHHHHHHH-
Q 007244 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWA---------RIC--------QDTIN-KGK-SGTKVQCLTSASSAL- 75 (611)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~---------~Is--------~D~i~-~~~-~~~~~~~~~~~~~~L- 75 (611)
....+..++|.||+|+||||+|+.+++.+..... ..+ .|.+. ++. ....+++ ..+.+.+
T Consensus 34 ~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~~eid~~s~~~v~~i-r~l~~~~~ 112 (576)
T PRK14965 34 TGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDVFEIDGASNTGVDDI-RELRENVK 112 (576)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCeeeeeccCccCHHHH-HHHHHHHH
Confidence 4566889999999999999999999998652100 000 11111 111 0011111 2222222
Q ss_pred -----HCCCcEEEecCC-CCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244 76 -----KKGKSVFLDRCN-LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (611)
Q Consensus 76 -----~~Gk~VIID~tn-l~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~ 127 (611)
...+.+|||... ++......+++. .+....+.+|+.....+.+..-+..|-.
T Consensus 113 ~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI~SRc~ 171 (576)
T PRK14965 113 YLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSRCQ 171 (576)
T ss_pred hccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHHHHhhh
Confidence 123568899744 444555667666 6665566677666666666666666654
No 386
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.19 E-value=0.025 Score=66.15 Aligned_cols=39 Identities=21% Similarity=0.400 Sum_probs=33.6
Q ss_pred cCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecc
Q 007244 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQD 54 (611)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D 54 (611)
...-|.=++|+||||+|||-+|++++.+.+.||..++.-
T Consensus 340 GAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGS 378 (774)
T KOG0731|consen 340 GAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGS 378 (774)
T ss_pred CCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechH
Confidence 345578899999999999999999999999888777653
No 387
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=95.18 E-value=0.022 Score=58.57 Aligned_cols=71 Identities=18% Similarity=0.244 Sum_probs=42.3
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHH---cCCCeEEeecchhccCCCCcHHHHHHHHHHHHHCCCcEEEecCC
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRS---SARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCN 87 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~---~~~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L~~Gk~VIID~tn 87 (611)
-++..++++.|+||||||+|+.+.+.. .+.+...|+.+.-...-.....++--........|...|+|...
T Consensus 20 ~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l~~~~~~~g~d~~~~~~~g~l~i~d~~~ 93 (260)
T COG0467 20 LPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEELLENARSFGWDLEVYIEKGKLAILDAFL 93 (260)
T ss_pred CcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHHHHHHHHHHcCCCHHHHhhcCCEEEEEccc
Confidence 467789999999999999999997643 24445556543321110001111111223566778888888833
No 388
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.17 E-value=0.11 Score=57.51 Aligned_cols=72 Identities=15% Similarity=0.207 Sum_probs=43.9
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHc----C-CCeEEeecchhccCCC-----------------CcHHHHHHHHHHHH
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSS----A-RPWARICQDTINKGKS-----------------GTKVQCLTSASSAL 75 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~----~-~~~~~Is~D~i~~~~~-----------------~~~~~~~~~~~~~L 75 (611)
..+.+|.|+|++|+||||+..+|+..+ + .....+..|.++-+.. ...... ..+...+
T Consensus 189 ~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl-~~al~~l 267 (420)
T PRK14721 189 EQGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADL-QLMLHEL 267 (420)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHH-HHHHHHh
Confidence 456799999999999999999988653 2 2234456666542211 011111 2333445
Q ss_pred HCCCcEEEecCCCCH
Q 007244 76 KKGKSVFLDRCNLER 90 (611)
Q Consensus 76 ~~Gk~VIID~tnl~~ 90 (611)
.....++||......
T Consensus 268 ~~~d~VLIDTaGrsq 282 (420)
T PRK14721 268 RGKHMVLIDTVGMSQ 282 (420)
T ss_pred cCCCEEEecCCCCCc
Confidence 556678888754444
No 389
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.16 E-value=0.12 Score=59.82 Aligned_cols=111 Identities=12% Similarity=0.159 Sum_probs=61.1
Q ss_pred cCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeE----------Eee--------cchhc-cC-CCCcHHHHHHHHHHHH
Q 007244 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWA----------RIC--------QDTIN-KG-KSGTKVQCLTSASSAL 75 (611)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~----------~Is--------~D~i~-~~-~~~~~~~~~~~~~~~L 75 (611)
....+..++|.|+||+||||+|+.+++.+..... ..+ .|.+. +. .....+++. .+.+.+
T Consensus 34 ~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~~~d~~~i~~~~~~~vd~ir-~ii~~~ 112 (585)
T PRK14950 34 EGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGSAVDVIEMDAASHTSVDDAR-EIIERV 112 (585)
T ss_pred hCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCCCCeEEEEeccccCCHHHHH-HHHHHH
Confidence 3456788999999999999999999988652110 000 01110 00 111122221 222222
Q ss_pred ------HCCCcEEEecCC-CCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244 76 ------KKGKSVFLDRCN-LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (611)
Q Consensus 76 ------~~Gk~VIID~tn-l~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~ 127 (611)
...+.+|||... ++......+++. ........+|+.....+.+...+..|..
T Consensus 113 ~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI~SR~~ 172 (585)
T PRK14950 113 QFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATILSRCQ 172 (585)
T ss_pred hhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHHHhccc
Confidence 223568888743 444555566666 5544445566666666666676766654
No 390
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.14 E-value=0.085 Score=59.37 Aligned_cols=40 Identities=18% Similarity=0.232 Sum_probs=30.4
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHc----C-CCeEEeecchhc
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSS----A-RPWARICQDTIN 57 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~----~-~~~~~Is~D~i~ 57 (611)
.++.+|+|+||+|+||||.+.+|+..+ + ..+..++.|.++
T Consensus 254 ~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~R 298 (484)
T PRK06995 254 DRGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYR 298 (484)
T ss_pred cCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccc
Confidence 346899999999999999999988654 2 234567777653
No 391
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=95.11 E-value=0.021 Score=63.03 Aligned_cols=33 Identities=24% Similarity=0.438 Sum_probs=27.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeec
Q 007244 21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ 53 (611)
Q Consensus 21 ~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~ 53 (611)
.-|+|.||||+|||++|+.+++.++.+|..++.
T Consensus 117 ~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da 149 (413)
T TIGR00382 117 SNILLIGPTGSGKTLLAQTLARILNVPFAIADA 149 (413)
T ss_pred ceEEEECCCCcCHHHHHHHHHHhcCCCeEEech
Confidence 469999999999999999999988877755543
No 392
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.10 E-value=0.022 Score=57.32 Aligned_cols=28 Identities=29% Similarity=0.400 Sum_probs=23.5
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRSS 44 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~ 44 (611)
-++..+..|+||+|||||||.+.+-+-.
T Consensus 30 i~~~~VTAlIGPSGcGKST~LR~lNRmn 57 (253)
T COG1117 30 IPKNKVTALIGPSGCGKSTLLRCLNRMN 57 (253)
T ss_pred ccCCceEEEECCCCcCHHHHHHHHHhhc
Confidence 4567899999999999999999886543
No 393
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=95.10 E-value=0.13 Score=54.56 Aligned_cols=112 Identities=18% Similarity=0.157 Sum_probs=64.5
Q ss_pred cCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeE-Eeecchh--c--cCCCCcHHHHHHHHHH----HH-HCCCcEEEec
Q 007244 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWA-RICQDTI--N--KGKSGTKVQCLTSASS----AL-KKGKSVFLDR 85 (611)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~-~Is~D~i--~--~~~~~~~~~~~~~~~~----~L-~~Gk~VIID~ 85 (611)
....|..+++.||+|+||+|+|+.+++.+..... ....|.+ . ++.....+++.+.+.. .. ...+.+|||.
T Consensus 22 ~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ 101 (313)
T PRK05564 22 KNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYN 101 (313)
T ss_pred cCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHHHHHHHHhcCcccCCceEEEEec
Confidence 5677889999999999999999999987531100 0001110 0 2222222333332221 11 1224577877
Q ss_pred -CCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244 86 -CNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (611)
Q Consensus 86 -tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~ 127 (611)
-.++......+++. .+.+....+|++....+.+..-++.|..
T Consensus 102 ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~ 145 (313)
T PRK05564 102 SEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQ 145 (313)
T ss_pred hhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhce
Confidence 34555566677777 7666556666665556666666666654
No 394
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=95.10 E-value=0.039 Score=64.35 Aligned_cols=37 Identities=27% Similarity=0.508 Sum_probs=31.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh
Q 007244 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (611)
Q Consensus 20 p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i 56 (611)
|.-|+|+|+||+||||+++.++.+.+.++..++...+
T Consensus 185 ~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~ 221 (644)
T PRK10733 185 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDF 221 (644)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHh
Confidence 3449999999999999999999999988877765444
No 395
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=95.08 E-value=0.17 Score=58.54 Aligned_cols=23 Identities=17% Similarity=0.348 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHc
Q 007244 22 LVIMVGAPGSGKSTFCEHVMRSS 44 (611)
Q Consensus 22 LIvLvG~PGSGKST~A~~L~~~~ 44 (611)
-++|.|++|+|||+|+..+....
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a 338 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYA 338 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHH
Confidence 38999999999999999988754
No 396
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=95.08 E-value=0.17 Score=58.24 Aligned_cols=112 Identities=14% Similarity=0.121 Sum_probs=62.7
Q ss_pred cCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCe-E--Eee--------------cchhc-cCCC-CcHHHHHHHHHHH--
Q 007244 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPW-A--RIC--------------QDTIN-KGKS-GTKVQCLTSASSA-- 74 (611)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~-~--~Is--------------~D~i~-~~~~-~~~~~~~~~~~~~-- 74 (611)
.+..+..++|.|++|+||||+|+.+++.+.... . .-+ .|.+. ++.. ...+++.......
T Consensus 34 ~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~ 113 (563)
T PRK06647 34 SNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMF 113 (563)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHh
Confidence 455678899999999999999999999875210 0 000 11111 1111 1112222222111
Q ss_pred ---HHCCCcEEEecCC-CCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244 75 ---LKKGKSVFLDRCN-LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (611)
Q Consensus 75 ---L~~Gk~VIID~tn-l~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~ 127 (611)
....+.+|||... ++......+++. .+.+..+.+|+.......+...+..|..
T Consensus 114 ~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~SRc~ 171 (563)
T PRK06647 114 PPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKSRCQ 171 (563)
T ss_pred chhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHHHhce
Confidence 1233568888744 444555666666 6655556666665555666666777754
No 397
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=95.06 E-value=0.017 Score=55.97 Aligned_cols=22 Identities=32% Similarity=0.715 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHc
Q 007244 23 VIMVGAPGSGKSTFCEHVMRSS 44 (611)
Q Consensus 23 IvLvG~PGSGKST~A~~L~~~~ 44 (611)
|+|+|+||+||||+.+++.+.+
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 7899999999999999998876
No 398
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.06 E-value=0.38 Score=51.60 Aligned_cols=105 Identities=15% Similarity=0.178 Sum_probs=57.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEee-cchh--c--cCCC-----CcHHHHHHHHHHHHHCCCcEEEecC
Q 007244 20 QILVIMVGAPGSGKSTFCEHVMRSSA---RPWARIC-QDTI--N--KGKS-----GTKVQCLTSASSALKKGKSVFLDRC 86 (611)
Q Consensus 20 p~LIvLvG~PGSGKST~A~~L~~~~~---~~~~~Is-~D~i--~--~~~~-----~~~~~~~~~~~~~L~~Gk~VIID~t 86 (611)
+..|+++|++||||||+.+.|..... .....+. .|.. . .... .......+.++.+|+.+-+.|+=+-
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR~~PD~IivGE 223 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLRPDRIIVGE 223 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHhCCCCCEEEEee
Confidence 34689999999999999999988652 1112222 1111 1 0000 0011234677788888877666554
Q ss_pred CCCHHHHHHHHHh--CCCCCeEEEEEEeCCHHHHHHHHHhcc
Q 007244 87 NLEREQRTDFVKL--GGPEVDVHAVVLDLPAKLCISRSVKRI 126 (611)
Q Consensus 87 nl~~~~R~~~~~l--~~~~~~v~vV~Ld~p~e~~~~Rl~~R~ 126 (611)
-...+. ..+++. ..+...+..+.-+ +......|+..-.
T Consensus 224 iRg~ea-~~~l~a~~tGh~G~itTiHA~-s~~~a~~Rl~~l~ 263 (323)
T PRK13833 224 VRDGAA-LTLLKAWNTGHPGGVTTIHSN-TAMSALRRLEQLT 263 (323)
T ss_pred cCCHHH-HHHHHHHcCCCCceEEEECCC-CHHHHHHHHHHHh
Confidence 444443 334444 2232234555544 3444677876543
No 399
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=95.04 E-value=0.37 Score=51.11 Aligned_cols=125 Identities=16% Similarity=0.161 Sum_probs=63.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcCCC--eEEee-cchhc--c-CCC---------C-cHHHHHHHHHHHHHCCCcEE
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSSARP--WARIC-QDTIN--K-GKS---------G-TKVQCLTSASSALKKGKSVF 82 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~--~~~Is-~D~i~--~-~~~---------~-~~~~~~~~~~~~L~~Gk~VI 82 (611)
....|+++|++||||||+.+.+...++.. .+.|. ...+. . ... . ......+.+..+|+..-.+|
T Consensus 143 ~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~pd~i 222 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRMRPDRI 222 (308)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhcCCCCeE
Confidence 35689999999999999999998776532 22221 11111 0 000 0 00113356666777766544
Q ss_pred EecCCCCHHHHHHHHHh-CCCCC-eEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHh
Q 007244 83 LDRCNLEREQRTDFVKL-GGPEV-DVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQ 146 (611)
Q Consensus 83 ID~tnl~~~~R~~~~~l-~~~~~-~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~ 146 (611)
+=+-....+.. .+++. ...+. .+..+. ..+......|+........ .....+.+.+.+...
T Consensus 223 i~gE~r~~e~~-~~l~a~~~g~~~~i~T~H-a~~~~~~~~Rl~~l~~~~~-~~~g~~~~~~~~~i~ 285 (308)
T TIGR02788 223 ILGELRGDEAF-DFIRAVNTGHPGSITTLH-AGSPEEAFEQLALMVKSSQ-AGLGLDFAYIVKLVR 285 (308)
T ss_pred EEeccCCHHHH-HHHHHHhcCCCeEEEEEe-CCCHHHHHHHHHHHhhccc-cccCCCHHHHHHHHH
Confidence 44434444433 34443 32222 233333 3456666888876533100 011355666544443
No 400
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.03 E-value=0.12 Score=55.91 Aligned_cols=30 Identities=20% Similarity=0.320 Sum_probs=25.8
Q ss_pred cCCCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (611)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~ 45 (611)
.+..|..++|.||||+||||+|+.+++...
T Consensus 35 ~~~~~~~~L~~G~~G~GKt~~a~~la~~l~ 64 (367)
T PRK14970 35 NNHLAQALLFCGPRGVGKTTCARILARKIN 64 (367)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 345677899999999999999999988764
No 401
>CHL00206 ycf2 Ycf2; Provisional
Probab=95.02 E-value=0.044 Score=69.37 Aligned_cols=42 Identities=14% Similarity=0.266 Sum_probs=36.4
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhcc
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK 58 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~ 58 (611)
...|.=|+|+||||+|||.+|++++.+.+.++..|+...+..
T Consensus 1627 l~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~ 1668 (2281)
T CHL00206 1627 LSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLD 1668 (2281)
T ss_pred CCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhh
Confidence 355778999999999999999999999999998888766653
No 402
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=95.02 E-value=0.03 Score=57.56 Aligned_cols=37 Identities=22% Similarity=0.392 Sum_probs=30.3
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeec
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ 53 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~ 53 (611)
-.+|.-++|-||||+|||-++++++......|.++..
T Consensus 186 idpprgvllygppg~gktml~kava~~t~a~firvvg 222 (408)
T KOG0727|consen 186 IDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVG 222 (408)
T ss_pred CCCCcceEEeCCCCCcHHHHHHHHhhccchheeeecc
Confidence 4567789999999999999999999887766665543
No 403
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.01 E-value=0.089 Score=56.35 Aligned_cols=37 Identities=24% Similarity=0.206 Sum_probs=27.6
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHH---cCCCeEEeec
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRS---SARPWARICQ 53 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~---~~~~~~~Is~ 53 (611)
-+...++.+.|+|||||||||-+++.. .+.....|+.
T Consensus 52 lp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~ 91 (325)
T cd00983 52 YPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDA 91 (325)
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECc
Confidence 345689999999999999999997743 3444555654
No 404
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=95.01 E-value=0.032 Score=59.89 Aligned_cols=38 Identities=29% Similarity=0.357 Sum_probs=29.0
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecc
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQD 54 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D 54 (611)
.+.+.+|.++|+||||||||+..+...+ +....+++.|
T Consensus 53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~D 93 (332)
T PRK09435 53 TGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVD 93 (332)
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeC
Confidence 5678999999999999999999976554 3344555544
No 405
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.01 E-value=0.042 Score=55.87 Aligned_cols=26 Identities=19% Similarity=0.328 Sum_probs=21.6
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRS 43 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~ 43 (611)
+...++++.|+||+||||++.+++..
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~ 47 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYG 47 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 45679999999999999998776543
No 406
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=95.01 E-value=0.077 Score=56.33 Aligned_cols=36 Identities=22% Similarity=0.405 Sum_probs=30.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i 56 (611)
++.+|+|+||.+||||-+|-.|+++++.. +||.|..
T Consensus 2 ~~~~i~I~GPTAsGKT~lai~LAk~~~~e--IIs~DSm 37 (308)
T COG0324 2 KPKLIVIAGPTASGKTALAIALAKRLGGE--IISLDSM 37 (308)
T ss_pred CccEEEEECCCCcCHHHHHHHHHHHcCCc--EEecchh
Confidence 46799999999999999999999999954 4666544
No 407
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.00 E-value=0.17 Score=58.75 Aligned_cols=30 Identities=20% Similarity=0.159 Sum_probs=26.3
Q ss_pred cCCCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (611)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~ 45 (611)
...-+.-++|.||+|+||||+|+.+++.+.
T Consensus 34 ~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~ 63 (620)
T PRK14954 34 MDRVGHGYIFSGLRGVGKTTAARVFAKAVN 63 (620)
T ss_pred cCCCCeeEEEECCCCCCHHHHHHHHHHHhC
Confidence 345677899999999999999999999876
No 408
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.00 E-value=0.037 Score=53.18 Aligned_cols=32 Identities=25% Similarity=0.516 Sum_probs=23.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH---cCCCeEEeec
Q 007244 22 LVIMVGAPGSGKSTFCEHVMRS---SARPWARICQ 53 (611)
Q Consensus 22 LIvLvG~PGSGKST~A~~L~~~---~~~~~~~Is~ 53 (611)
++++.|+||+|||+|+.+++.. .+.....++.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~ 35 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTL 35 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEEC
Confidence 3789999999999999987653 2344445554
No 409
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.99 E-value=0.19 Score=58.38 Aligned_cols=30 Identities=20% Similarity=0.314 Sum_probs=26.7
Q ss_pred cCCCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (611)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~ 45 (611)
....+..++|+|++|+||||+|+.+++.++
T Consensus 34 ~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~Ln 63 (618)
T PRK14951 34 QQRLHHAYLFTGTRGVGKTTVSRILAKSLN 63 (618)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 456688999999999999999999998875
No 410
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.99 E-value=0.18 Score=48.16 Aligned_cols=82 Identities=15% Similarity=0.140 Sum_probs=45.9
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHcCC--CeEEeecchhcc--------CCC-----CcH--HHHHHHHHHHHHCCCc
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSSAR--PWARICQDTINK--------GKS-----GTK--VQCLTSASSALKKGKS 80 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~--~~~~Is~D~i~~--------~~~-----~~~--~~~~~~~~~~L~~Gk~ 80 (611)
.+..++.|+|++|||||||.+.++..... .-+.++...+.. ... ... .+....++..+...+.
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~i 103 (163)
T cd03216 24 RRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNARL 103 (163)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCCE
Confidence 45678999999999999999999865431 122333211111 000 011 1223444444555566
Q ss_pred EEEec--CCCCHHHHHHHHHh
Q 007244 81 VFLDR--CNLEREQRTDFVKL 99 (611)
Q Consensus 81 VIID~--tnl~~~~R~~~~~l 99 (611)
+++|. ..+....+..+.++
T Consensus 104 lllDEP~~~LD~~~~~~l~~~ 124 (163)
T cd03216 104 LILDEPTAALTPAEVERLFKV 124 (163)
T ss_pred EEEECCCcCCCHHHHHHHHHH
Confidence 77777 33555666666555
No 411
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=94.99 E-value=0.021 Score=50.66 Aligned_cols=22 Identities=18% Similarity=0.563 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHc
Q 007244 23 VIMVGAPGSGKSTFCEHVMRSS 44 (611)
Q Consensus 23 IvLvG~PGSGKST~A~~L~~~~ 44 (611)
|+++|.+|||||||.+.+....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7899999999999999998654
No 412
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=94.99 E-value=0.12 Score=53.91 Aligned_cols=29 Identities=21% Similarity=0.299 Sum_probs=25.7
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~ 45 (611)
...|.-++|.||||+||||.|..+++.+.
T Consensus 21 ~~~~halL~~Gp~G~Gktt~a~~lA~~l~ 49 (325)
T COG0470 21 GRLPHALLFYGPPGVGKTTAALALAKELL 49 (325)
T ss_pred CCCCceeeeeCCCCCCHHHHHHHHHHHHh
Confidence 45677899999999999999999998865
No 413
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=94.96 E-value=0.17 Score=59.53 Aligned_cols=111 Identities=14% Similarity=0.144 Sum_probs=61.5
Q ss_pred cCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEE--------------eecchhc-cCCC-CcHHHHHHHHHHHHH---
Q 007244 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWAR--------------ICQDTIN-KGKS-GTKVQCLTSASSALK--- 76 (611)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~--------------Is~D~i~-~~~~-~~~~~~~~~~~~~L~--- 76 (611)
....+..++|.||+|+||||+|+.+++.+...... .+.|.+. ++.. ....++ +.+.+.+.
T Consensus 36 ~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvieidaasn~~vd~I-ReLie~~~~~P 114 (725)
T PRK07133 36 SNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEMDAASNNGVDEI-RELIENVKNLP 114 (725)
T ss_pred cCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEEeccccCCHHHH-HHHHHHHHhch
Confidence 45668899999999999999999999886532100 0011111 1100 011222 22222222
Q ss_pred ---CCCcEEEecCC-CCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244 77 ---KGKSVFLDRCN-LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (611)
Q Consensus 77 ---~Gk~VIID~tn-l~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~ 127 (611)
..+.+|||... ++......+++. .+.+..+.+|++....+.+...+..|-.
T Consensus 115 ~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~SRcq 170 (725)
T PRK07133 115 TQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILSRVQ 170 (725)
T ss_pred hcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHHhhce
Confidence 22468898844 344445556665 5555555666666556666556666653
No 414
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=94.95 E-value=0.23 Score=53.56 Aligned_cols=107 Identities=20% Similarity=0.171 Sum_probs=58.1
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcCCC---eEEeecchhc-----------cCCCCc-HHHHHHHHHHHHHCCCcEEE
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSSARP---WARICQDTIN-----------KGKSGT-KVQCLTSASSALKKGKSVFL 83 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~---~~~Is~D~i~-----------~~~~~~-~~~~~~~~~~~L~~Gk~VII 83 (611)
...+|+++||+||||||+.+.+....... .+..-.|.+. ..+.+. ...+...++.+|+.+-++|+
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~ 200 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVIL 200 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEE
Confidence 35789999999999999999988765421 1111122211 101111 11234667778887766555
Q ss_pred ecCCCCHHHHHHHHHhCCCCCeEEEEEEe-CCHHHHHHHHHhcc
Q 007244 84 DRCNLEREQRTDFVKLGGPEVDVHAVVLD-LPAKLCISRSVKRI 126 (611)
Q Consensus 84 D~tnl~~~~R~~~~~l~~~~~~v~vV~Ld-~p~e~~~~Rl~~R~ 126 (611)
=+-....+.....++....|..+ +..+. .+......|+..-.
T Consensus 201 vgEird~~~~~~~l~aa~tGh~v-~~T~Ha~~~~~~~~Rl~~~~ 243 (343)
T TIGR01420 201 IGEMRDLETVELALTAAETGHLV-FGTLHTNSAAQTIERIIDVF 243 (343)
T ss_pred EeCCCCHHHHHHHHHHHHcCCcE-EEEEcCCCHHHHHHHHHHhc
Confidence 44345555444444442223322 22233 35556778887554
No 415
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.95 E-value=0.018 Score=51.35 Aligned_cols=23 Identities=30% Similarity=0.603 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcC
Q 007244 23 VIMVGAPGSGKSTFCEHVMRSSA 45 (611)
Q Consensus 23 IvLvG~PGSGKST~A~~L~~~~~ 45 (611)
|+|.|+||+|||++++.|++.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 67999999999999999887644
No 416
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=94.94 E-value=0.27 Score=54.82 Aligned_cols=23 Identities=17% Similarity=0.316 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHc
Q 007244 22 LVIMVGAPGSGKSTFCEHVMRSS 44 (611)
Q Consensus 22 LIvLvG~PGSGKST~A~~L~~~~ 44 (611)
-++|.|+||+|||++++.+...+
T Consensus 132 ~l~lyG~~G~GKTHLl~ai~~~l 154 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Confidence 38999999999999999888753
No 417
>PRK00089 era GTPase Era; Reviewed
Probab=94.93 E-value=0.15 Score=53.28 Aligned_cols=25 Identities=36% Similarity=0.535 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRS 43 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~ 43 (611)
+...|.++|.||||||||.+.+...
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~ 28 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQ 28 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999998743
No 418
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=94.88 E-value=0.26 Score=52.93 Aligned_cols=122 Identities=14% Similarity=0.169 Sum_probs=70.1
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEE---ee--------------cchh--ccC---CCC
Q 007244 5 IDDTCKAKDEEKKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWAR---IC--------------QDTI--NKG---KSG 62 (611)
Q Consensus 5 ~~~~c~~~~~~~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~---Is--------------~D~i--~~~---~~~ 62 (611)
|...-|......+..|.-+++.||+|+||+|+|+.+++.+...... -+ .|.+ ..+ ...
T Consensus 7 Wl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i 86 (328)
T PRK05707 7 WQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTI 86 (328)
T ss_pred CcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCC
Confidence 4444444444557778999999999999999999999876421000 00 0111 111 111
Q ss_pred cHHHHHHHHHHHHH------CCCcEEEecCC-CCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244 63 TKVQCLTSASSALK------KGKSVFLDRCN-LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (611)
Q Consensus 63 ~~~~~~~~~~~~L~------~Gk~VIID~tn-l~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~ 127 (611)
..+++.+ +.+.+. ..+.+|||... ++......+++. .+.+....+|.+--..+.+..-++.|-.
T Consensus 87 ~id~iR~-l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~ 158 (328)
T PRK05707 87 KVDQVRE-LVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQ 158 (328)
T ss_pred CHHHHHH-HHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhce
Confidence 2233322 222222 12457787643 566777788888 7766666677666666555555555543
No 419
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.88 E-value=0.24 Score=55.69 Aligned_cols=31 Identities=35% Similarity=0.704 Sum_probs=27.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEe
Q 007244 21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARI 51 (611)
Q Consensus 21 ~LIvLvG~PGSGKST~A~~L~~~~~~~~~~I 51 (611)
.=++|.||||||||++|.+++...+.||+-|
T Consensus 539 vSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKi 569 (744)
T KOG0741|consen 539 VSVLLEGPPGSGKTALAAKIALSSDFPFVKI 569 (744)
T ss_pred eEEEEecCCCCChHHHHHHHHhhcCCCeEEE
Confidence 4578999999999999999999988888644
No 420
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=94.87 E-value=0.13 Score=60.00 Aligned_cols=30 Identities=20% Similarity=0.309 Sum_probs=26.6
Q ss_pred cCCCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (611)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~ 45 (611)
....+..++|+|++|+||||+|+.+++.++
T Consensus 34 ~~rl~Ha~Lf~GP~GvGKTTlAriLAk~Ln 63 (709)
T PRK08691 34 EGRLHHAYLLTGTRGVGKTTIARILAKSLN 63 (709)
T ss_pred cCCCCeEEEEECCCCCcHHHHHHHHHHHhc
Confidence 456688999999999999999999999865
No 421
>COG4240 Predicted kinase [General function prediction only]
Probab=94.83 E-value=0.058 Score=54.78 Aligned_cols=66 Identities=24% Similarity=0.365 Sum_probs=43.9
Q ss_pred ccCCCcEEEEEEcCCCCcHHHHHHHHHHHc---C-CCeEEeecchhc-------------------cCCCCcHH-HHHHH
Q 007244 15 EKKWKQILVIMVGAPGSGKSTFCEHVMRSS---A-RPWARICQDTIN-------------------KGKSGTKV-QCLTS 70 (611)
Q Consensus 15 ~~~~~p~LIvLvG~PGSGKST~A~~L~~~~---~-~~~~~Is~D~i~-------------------~~~~~~~~-~~~~~ 70 (611)
+..+.|.++.++||-||||||++..+...+ + .....++.|+++ +|-.++.+ .+...
T Consensus 45 qe~grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~tlgln 124 (300)
T COG4240 45 QERGRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGLN 124 (300)
T ss_pred hhcCCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHHH
Confidence 355679999999999999999988754432 2 344566777773 12233333 34566
Q ss_pred HHHHHHCCCc
Q 007244 71 ASSALKKGKS 80 (611)
Q Consensus 71 ~~~~L~~Gk~ 80 (611)
+.+++.+|..
T Consensus 125 VLnai~~g~~ 134 (300)
T COG4240 125 VLNAIARGGP 134 (300)
T ss_pred HHHHHhcCCC
Confidence 7777777764
No 422
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=94.83 E-value=0.034 Score=55.14 Aligned_cols=41 Identities=29% Similarity=0.409 Sum_probs=30.8
Q ss_pred CCCc-EEEEEEcCCCCcHHHHHHHHHHHcCC--CeEEeecchhc
Q 007244 17 KWKQ-ILVIMVGAPGSGKSTFCEHVMRSSAR--PWARICQDTIN 57 (611)
Q Consensus 17 ~~~p-~LIvLvG~PGSGKST~A~~L~~~~~~--~~~~Is~D~i~ 57 (611)
...| ..|-+.||||||||++..++.+.+.. ...+|..|.+.
T Consensus 9 ~~~~~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t 52 (202)
T COG0378 9 KNRPMLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYT 52 (202)
T ss_pred hcCceEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeec
Confidence 3455 78999999999999999998777642 34566666653
No 423
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.82 E-value=0.22 Score=51.14 Aligned_cols=37 Identities=24% Similarity=0.260 Sum_probs=26.9
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHHc----CCCeEEeec
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRSS----ARPWARICQ 53 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~----~~~~~~Is~ 53 (611)
-....++++.|+||+|||||+.+++... +.....++.
T Consensus 27 ~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~ 67 (271)
T cd01122 27 LRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred EcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence 3455799999999999999999876542 434445554
No 424
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=94.81 E-value=0.027 Score=55.99 Aligned_cols=26 Identities=27% Similarity=0.445 Sum_probs=23.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244 20 QILVIMVGAPGSGKSTFCEHVMRSSA 45 (611)
Q Consensus 20 p~LIvLvG~PGSGKST~A~~L~~~~~ 45 (611)
|..|.|+|++||||||+.+++...+.
T Consensus 1 ~~~i~i~G~~GsGKTTll~~l~~~l~ 26 (199)
T TIGR00101 1 PLKIGVAGPVGSGKTALIEALTRALR 26 (199)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhC
Confidence 56899999999999999999988754
No 425
>PRK13768 GTPase; Provisional
Probab=94.80 E-value=0.034 Score=57.34 Aligned_cols=36 Identities=25% Similarity=0.316 Sum_probs=27.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecc
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQD 54 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D 54 (611)
|+.++++.|++||||||++..++..+ +.....|+.|
T Consensus 1 ~~~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D 39 (253)
T PRK13768 1 MMYIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLD 39 (253)
T ss_pred CcEEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECC
Confidence 46789999999999999998877543 3455566654
No 426
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=94.80 E-value=0.16 Score=57.94 Aligned_cols=112 Identities=14% Similarity=0.114 Sum_probs=61.6
Q ss_pred cCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCe-E-----Ee-----------ecchhccCCC--CcHHHHHHHHHHH--
Q 007244 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPW-A-----RI-----------CQDTINKGKS--GTKVQCLTSASSA-- 74 (611)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~-~-----~I-----------s~D~i~~~~~--~~~~~~~~~~~~~-- 74 (611)
....+.+++|.|++|+||||+|+.+++.+...- . .. ..|.+.-+.. ...+.+...+...
T Consensus 32 ~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~eldaas~~gId~IRelie~~~~ 111 (535)
T PRK08451 32 NNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEMDAASNRGIDDIRELIEQTKY 111 (535)
T ss_pred cCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEeccccccCHHHHHHHHHHHhh
Confidence 456788999999999999999999998763100 0 00 0111110000 1122333333221
Q ss_pred ---HHCCCcEEEecCC-CCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244 75 ---LKKGKSVFLDRCN-LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (611)
Q Consensus 75 ---L~~Gk~VIID~tn-l~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~ 127 (611)
....+.+|||... ++......+++. .+.+..+.+|++......+..-+..|..
T Consensus 112 ~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI~SRc~ 169 (535)
T PRK08451 112 KPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATILSRTQ 169 (535)
T ss_pred CcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchHHHhhce
Confidence 1223568999844 455555666666 6655556666666555444444555543
No 427
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=94.80 E-value=0.029 Score=63.74 Aligned_cols=29 Identities=17% Similarity=0.339 Sum_probs=25.9
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHcCC
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSSAR 46 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~ 46 (611)
..+.+++|.|||||||||..+.|+++++.
T Consensus 43 ~~~~iLlLtGP~G~GKtttv~~La~elg~ 71 (519)
T PF03215_consen 43 SPKRILLLTGPSGCGKTTTVKVLAKELGF 71 (519)
T ss_pred CCcceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 34569999999999999999999999884
No 428
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=94.77 E-value=0.027 Score=55.90 Aligned_cols=29 Identities=28% Similarity=0.530 Sum_probs=25.4
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~ 45 (611)
...+.+|.|+|++|||||||.+++++.++
T Consensus 19 ~~~~~~i~~~G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 19 KHGLVVLNFMSSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred hcCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 45688999999999999999999988754
No 429
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=94.76 E-value=0.018 Score=52.63 Aligned_cols=28 Identities=32% Similarity=0.357 Sum_probs=23.4
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~ 45 (611)
.+..++.|+|++|||||||.+.+.....
T Consensus 9 ~~g~~~~i~G~nGsGKStLl~~l~g~~~ 36 (137)
T PF00005_consen 9 KPGEIVAIVGPNGSGKSTLLKALAGLLP 36 (137)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHTTSSH
T ss_pred cCCCEEEEEccCCCccccceeeeccccc
Confidence 3456899999999999999999876543
No 430
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.76 E-value=0.14 Score=57.49 Aligned_cols=126 Identities=18% Similarity=0.263 Sum_probs=74.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCC-eEEeecchhccCCCCcHHHHHHHHHHHHHCCCcEEEecCCCCHHHHHHHHHh
Q 007244 21 ILVIMVGAPGSGKSTFCEHVMRSSARP-WARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNLEREQRTDFVKL 99 (611)
Q Consensus 21 ~LIvLvG~PGSGKST~A~~L~~~~~~~-~~~Is~D~i~~~~~~~~~~~~~~~~~~L~~Gk~VIID~tnl~~~~R~~~~~l 99 (611)
+=|+|-||||+|||-+|+++-+-++.. =.+++...|-+...+..++.. ++..+ | .-++|+.+
T Consensus 257 KGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYVGeSE~Nv---R~LFa-------D-------AEeE~r~~ 319 (744)
T KOG0741|consen 257 KGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGESEENV---RKLFA-------D-------AEEEQRRL 319 (744)
T ss_pred eeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHhhcccHHHH---HHHHH-------h-------HHHHHHhh
Confidence 458999999999999999999887732 124565555444444443322 11111 2 24455555
Q ss_pred -CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhccCCCccCCccEEEEcC---ChhhHHHHHH
Q 007244 100 -GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQ---NENDVQAALD 174 (611)
Q Consensus 100 -~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~e~P~~~EgFd~V~vv~---~~~evd~av~ 174 (611)
...+ +++|.+|-=..+|++|=..++. ..+.+.++++++....-- |....|+++- ..+-+|+++-
T Consensus 320 g~~Sg--LHIIIFDEiDAICKqRGS~~g~------TGVhD~VVNQLLsKmDGV---eqLNNILVIGMTNR~DlIDEALL 387 (744)
T KOG0741|consen 320 GANSG--LHIIIFDEIDAICKQRGSMAGS------TGVHDTVVNQLLSKMDGV---EQLNNILVIGMTNRKDLIDEALL 387 (744)
T ss_pred CccCC--ceEEEehhhHHHHHhcCCCCCC------CCccHHHHHHHHHhcccH---HhhhcEEEEeccCchhhHHHHhc
Confidence 3333 4677777666777766544432 268889999888765221 2233455543 3456666653
No 431
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=94.72 E-value=0.14 Score=52.67 Aligned_cols=96 Identities=17% Similarity=0.214 Sum_probs=52.3
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHc----CCCeEEeecchh--------------------ccCCCCcHH-HHHHHHH
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSS----ARPWARICQDTI--------------------NKGKSGTKV-QCLTSAS 72 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~----~~~~~~Is~D~i--------------------~~~~~~~~~-~~~~~~~ 72 (611)
.+..|++|.|.||+|||+|+..++... +.+...++.++= +.+.....+ +....+.
T Consensus 17 ~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~~~~l~~R~la~~s~v~~~~i~~g~l~~~e~~~~~~~~ 96 (259)
T PF03796_consen 17 RPGELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMSEEELAARLLARLSGVPYNKIRSGDLSDEEFERLQAAA 96 (259)
T ss_dssp -TT-EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-HHHHHHHHHHHHHTSTHHHHHCCGCHHHHHHHHHHHH
T ss_pred CcCcEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhhcchhhhhhccccCHHHHHHHHHHH
Confidence 345799999999999999999987642 334555664221 122111111 1123344
Q ss_pred HHHHCCCcEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeC
Q 007244 73 SALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDL 113 (611)
Q Consensus 73 ~~L~~Gk~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~ 113 (611)
..|.....+|.|...++.......++. +.....+.+|++|-
T Consensus 97 ~~l~~~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDy 138 (259)
T PF03796_consen 97 EKLSDLPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDY 138 (259)
T ss_dssp HHHHTSEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEE
T ss_pred HHHhhCcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEech
Confidence 556665666667666677665555543 22213445666663
No 432
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=94.72 E-value=0.025 Score=50.37 Aligned_cols=21 Identities=33% Similarity=0.588 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 007244 23 VIMVGAPGSGKSTFCEHVMRS 43 (611)
Q Consensus 23 IvLvG~PGSGKST~A~~L~~~ 43 (611)
|+++|.||+|||||.+.|...
T Consensus 2 V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 789999999999999999863
No 433
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.72 E-value=0.27 Score=56.97 Aligned_cols=29 Identities=17% Similarity=0.255 Sum_probs=25.3
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~ 45 (611)
..-+..++|.|+||+||||+|+.+++.+.
T Consensus 35 ~ri~ha~Lf~GPpG~GKTtiArilAk~L~ 63 (624)
T PRK14959 35 NRVAPAYLFSGTRGVGKTTIARIFAKALN 63 (624)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHhcc
Confidence 34467899999999999999999999876
No 434
>PRK08939 primosomal protein DnaI; Reviewed
Probab=94.69 E-value=0.11 Score=55.21 Aligned_cols=126 Identities=13% Similarity=0.060 Sum_probs=71.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchhccCCCCcH-HHHHHHHHHHHHCCCcEEEecCC---CCHH
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGKSGTK-VQCLTSASSALKKGKSVFLDRCN---LERE 91 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D~i~~~~~~~~-~~~~~~~~~~L~~Gk~VIID~tn---l~~~ 91 (611)
...-++|.|++|+|||+++..++..+ +.....+....+........ ..-+....+.+..-...|||... .+.+
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~~~dlLiIDDiG~e~~s~~ 234 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAVKEAPVLMLDDIGAEQMSSW 234 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHhcCCCEEEEecCCCccccHH
Confidence 34569999999999999999998775 33333344332211000000 00112334556677779999954 5566
Q ss_pred HHHHHHH-h--CC-CCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHh
Q 007244 92 QRTDFVK-L--GG-PEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQ 146 (611)
Q Consensus 92 ~R~~~~~-l--~~-~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~ 146 (611)
.|..++. + .. .....++|--..+.+.+.+++..-.. +..+......++.|+..
T Consensus 235 ~~~~ll~~Il~~R~~~~~~ti~TSNl~~~el~~~~~~~~~--g~~e~~~a~ri~dRI~~ 291 (306)
T PRK08939 235 VRDEVLGVILQYRMQEELPTFFTSNFDFDELEHHLAYTQR--GEDETWKAARIMERIRY 291 (306)
T ss_pred HHHHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHhhhcc--CcchhhHHHHHHHHHHH
Confidence 6755543 2 22 23445677778899999888742211 00011244566666654
No 435
>PRK04328 hypothetical protein; Provisional
Probab=94.68 E-value=0.07 Score=54.83 Aligned_cols=68 Identities=18% Similarity=0.297 Sum_probs=39.4
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHH---cCCCeEEeecchhccCCCCcHHHHH-HHHHHHHHCCCcEEEecC
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRS---SARPWARICQDTINKGKSGTKVQCL-TSASSALKKGKSVFLDRC 86 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~---~~~~~~~Is~D~i~~~~~~~~~~~~-~~~~~~L~~Gk~VIID~t 86 (611)
++..++++.|+||||||+|+.+++.. .+.....++.+.-... .......+ -.+...+..|...++|..
T Consensus 21 p~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee~~~~-i~~~~~~~g~d~~~~~~~~~l~iid~~ 92 (249)
T PRK04328 21 PERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEEHPVQ-VRRNMRQFGWDVRKYEEEGKFAIVDAF 92 (249)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeCCHHH-HHHHHHHcCCCHHHHhhcCCEEEEecc
Confidence 46789999999999999999987643 2334444554321100 00000000 113445566777888873
No 436
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=94.64 E-value=0.063 Score=63.55 Aligned_cols=24 Identities=29% Similarity=0.469 Sum_probs=21.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHc
Q 007244 21 ILVIMVGAPGSGKSTFCEHVMRSS 44 (611)
Q Consensus 21 ~LIvLvG~PGSGKST~A~~L~~~~ 44 (611)
.-++|+|+||+|||++++.+++..
T Consensus 204 ~n~lL~G~pG~GKT~l~~~la~~~ 227 (731)
T TIGR02639 204 NNPLLVGEPGVGKTAIAEGLALRI 227 (731)
T ss_pred CceEEECCCCCCHHHHHHHHHHHH
Confidence 346899999999999999999875
No 437
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=94.63 E-value=0.19 Score=56.19 Aligned_cols=30 Identities=17% Similarity=0.252 Sum_probs=25.9
Q ss_pred cCCCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (611)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~ 45 (611)
.+..+..++|.|+||+||||+|+.+++.+.
T Consensus 35 ~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~ 64 (451)
T PRK06305 35 FNRAAHAYLFSGIRGTGKTTLARIFAKALN 64 (451)
T ss_pred cCCCceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 345578899999999999999999998764
No 438
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=94.63 E-value=0.036 Score=60.98 Aligned_cols=40 Identities=18% Similarity=0.179 Sum_probs=30.6
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCe-EEeecchh
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPW-ARICQDTI 56 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~-~~Is~D~i 56 (611)
......|+|+|++||||||++++|++.++..+ ..+.++.+
T Consensus 216 ~~~~~~IvI~G~~gsGKTTL~~~La~~~g~~~v~E~~R~~~ 256 (399)
T PRK08099 216 PFFVRTVAILGGESSGKSTLVNKLANIFNTTSAWEYGREYV 256 (399)
T ss_pred hCCCcEEEEEcCCCCCHHHHHHHHHHHhCCCeeeeccHHHH
Confidence 34457899999999999999999999988554 23344444
No 439
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.62 E-value=0.13 Score=55.00 Aligned_cols=74 Identities=22% Similarity=0.283 Sum_probs=48.6
Q ss_pred cCCCcEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEeecchhccC-------------------CCC--cHHHHHHHH
Q 007244 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINKG-------------------KSG--TKVQCLTSA 71 (611)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~---~~~~~Is~D~i~~~-------------------~~~--~~~~~~~~~ 71 (611)
..++|.+|+++|..|+||||-+-+|+..+. ......-.|.+|-+ ..+ +..-+++.+
T Consensus 135 ~~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi 214 (340)
T COG0552 135 KEKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAI 214 (340)
T ss_pred cCCCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHH
Confidence 456799999999999999998888776543 33333456777521 112 223456788
Q ss_pred HHHHHCCCcEEEecCCCC
Q 007244 72 SSALKKGKSVFLDRCNLE 89 (611)
Q Consensus 72 ~~~L~~Gk~VIID~tnl~ 89 (611)
..+-.+|.++|+=.|..+
T Consensus 215 ~~Akar~~DvvliDTAGR 232 (340)
T COG0552 215 QAAKARGIDVVLIDTAGR 232 (340)
T ss_pred HHHHHcCCCEEEEeCccc
Confidence 888888877554444433
No 440
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=94.61 E-value=0.29 Score=52.46 Aligned_cols=113 Identities=17% Similarity=0.160 Sum_probs=65.2
Q ss_pred ccCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCe------EEee-----------cchhc---cCCCCcHHHHHHHHHHH
Q 007244 15 EKKWKQILVIMVGAPGSGKSTFCEHVMRSSARPW------ARIC-----------QDTIN---KGKSGTKVQCLTSASSA 74 (611)
Q Consensus 15 ~~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~------~~Is-----------~D~i~---~~~~~~~~~~~~~~~~~ 74 (611)
..+..|..++|.||+|+||+|+|+.+++.+.... .-.+ .|... ++.....+++.+.+...
T Consensus 23 ~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~~~~~i~id~ir~l~~~~ 102 (329)
T PRK08058 23 AKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAPDGQSIKKDQIRYLKEEF 102 (329)
T ss_pred HcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEeccccccCCHHHHHHHHHHH
Confidence 3567789999999999999999999988753110 0000 01110 11111223333333221
Q ss_pred H-----HCCCcEEEec-CCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244 75 L-----KKGKSVFLDR-CNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (611)
Q Consensus 75 L-----~~Gk~VIID~-tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~ 127 (611)
- ...+.+|||. -.++......+++. .+.+....+|++-...+.+..-++.|-.
T Consensus 103 ~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrSRc~ 162 (329)
T PRK08058 103 SKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSRCQ 162 (329)
T ss_pred hhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHhhce
Confidence 1 1235688887 33555566677777 7766666666666666666666666654
No 441
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.61 E-value=0.029 Score=56.99 Aligned_cols=39 Identities=21% Similarity=0.274 Sum_probs=28.8
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhcc
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK 58 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~ 58 (611)
+...+.+++||.||||||++..++-.-. |.+...+.+.+
T Consensus 28 ~~GEvhaiMGPNGsGKSTLa~~i~G~p~--Y~Vt~G~I~~~ 66 (251)
T COG0396 28 KEGEVHAIMGPNGSGKSTLAYTIMGHPK--YEVTEGEILFD 66 (251)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC--ceEecceEEEC
Confidence 5567899999999999999999986543 44444444443
No 442
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=94.58 E-value=0.046 Score=57.70 Aligned_cols=39 Identities=31% Similarity=0.256 Sum_probs=28.8
Q ss_pred cCCCcEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecc
Q 007244 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQD 54 (611)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D 54 (611)
....+.+|.|+|+|||||||++..+...+ +....+|+.|
T Consensus 30 ~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D 71 (300)
T TIGR00750 30 YTGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVD 71 (300)
T ss_pred ccCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 34567888999999999999999987654 3334455555
No 443
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=94.57 E-value=0.027 Score=57.26 Aligned_cols=25 Identities=36% Similarity=0.395 Sum_probs=21.4
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHH
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMR 42 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~ 42 (611)
++..++.++||+||||||+.+.+.-
T Consensus 29 ~~Ge~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 29 EAGEFVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4567899999999999999997754
No 444
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=94.56 E-value=0.32 Score=52.62 Aligned_cols=105 Identities=11% Similarity=0.131 Sum_probs=55.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcCCC--eEEee-cchhc-cCC-----------CC-cHHHHHHHHHHHHHCCCcEE
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSSARP--WARIC-QDTIN-KGK-----------SG-TKVQCLTSASSALKKGKSVF 82 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~--~~~Is-~D~i~-~~~-----------~~-~~~~~~~~~~~~L~~Gk~VI 82 (611)
....|+++|++||||||+++.+....+.. .+.|. ...+. ... .+ ......+.+..+|+..-++|
T Consensus 161 ~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~~LR~~pD~I 240 (344)
T PRK13851 161 GRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRMRPDRI 240 (344)
T ss_pred cCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccccCCCCCEEEEEeeccccCcCccCHHHHHHHHhcCCCCeE
Confidence 34679999999999999999999876532 22221 11111 000 00 00112356667777776665
Q ss_pred EecCCCCHHHHHHHHHh--CCCCCeEEEEEEeCCHHHHHHHHHhc
Q 007244 83 LDRCNLEREQRTDFVKL--GGPEVDVHAVVLDLPAKLCISRSVKR 125 (611)
Q Consensus 83 ID~tnl~~~~R~~~~~l--~~~~~~v~vV~Ld~p~e~~~~Rl~~R 125 (611)
+=+--...+.. .+++. ..+...+..+.-. +......|+..-
T Consensus 241 ivGEiR~~ea~-~~l~a~~tGh~G~ltTiHa~-s~~~a~~Rl~~l 283 (344)
T PRK13851 241 LLGEMRDDAAW-AYLSEVVSGHPGSISTIHGA-NPVQGFKKLFSL 283 (344)
T ss_pred EEEeeCcHHHH-HHHHHHHhCCCcEEECCCCC-CHHHHHHHHHHH
Confidence 55534444433 33333 3332223344333 444567776544
No 445
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.54 E-value=0.24 Score=51.47 Aligned_cols=105 Identities=15% Similarity=0.141 Sum_probs=57.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcCCC-eEEeec-c--hhc-cCCC----Cc--HHHHHHHHHHHHHCCCcEEEecCC
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSSARP-WARICQ-D--TIN-KGKS----GT--KVQCLTSASSALKKGKSVFLDRCN 87 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~-~~~Is~-D--~i~-~~~~----~~--~~~~~~~~~~~L~~Gk~VIID~tn 87 (611)
..-+|+++|++||||||+.+.+....... ...+.- | ++. .+.. .. .....+.++.+|+.+-++|+=+--
T Consensus 79 ~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEi 158 (264)
T cd01129 79 PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIPGINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEI 158 (264)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCCCceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccC
Confidence 34589999999999999999988766422 112221 1 111 1100 00 012346777888888777776655
Q ss_pred CCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHh
Q 007244 88 LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVK 124 (611)
Q Consensus 88 l~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~ 124 (611)
...+....+++. ..-+.-+..+.- -+......|+..
T Consensus 159 R~~e~a~~~~~aa~tGh~v~tTlHa-~~~~~ai~Rl~~ 195 (264)
T cd01129 159 RDAETAEIAVQAALTGHLVLSTLHT-NDAPGAITRLLD 195 (264)
T ss_pred CCHHHHHHHHHHHHcCCcEEEEecc-CCHHHHHHHHHH
Confidence 555555555555 322222222222 244556666653
No 446
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=94.54 E-value=0.12 Score=54.93 Aligned_cols=34 Identities=29% Similarity=0.401 Sum_probs=28.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh
Q 007244 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (611)
Q Consensus 20 p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i 56 (611)
+.+|+++||+|||||.+|-+|++..+ .+||.|..
T Consensus 4 ~~ii~I~GpTasGKS~LAl~LA~~~~---eIIsaDS~ 37 (300)
T PRK14729 4 NKIVFIFGPTAVGKSNILFHFPKGKA---EIINVDSI 37 (300)
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCC---cEEeccHH
Confidence 34899999999999999999999843 46776655
No 447
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=94.54 E-value=0.12 Score=55.35 Aligned_cols=37 Identities=22% Similarity=0.222 Sum_probs=27.0
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeec
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQ 53 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~ 53 (611)
-+...++.+.|+|||||||||.+++... +.....|+.
T Consensus 52 lp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~ 91 (321)
T TIGR02012 52 LPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDA 91 (321)
T ss_pred CcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcc
Confidence 3456899999999999999999876543 334445543
No 448
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.53 E-value=0.23 Score=46.77 Aligned_cols=82 Identities=24% Similarity=0.249 Sum_probs=45.9
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHcCCC--eEEeecchhcc-------CCC-----Cc--HHHHHHHHHHHHHCCCcE
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARP--WARICQDTINK-------GKS-----GT--KVQCLTSASSALKKGKSV 81 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~--~~~Is~D~i~~-------~~~-----~~--~~~~~~~~~~~L~~Gk~V 81 (611)
.+..++.|+|++|||||||.+.+...+... .+.++...+.. ... .. ..+....++..+.....+
T Consensus 23 ~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~~~~i~ 102 (157)
T cd00267 23 KAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLLNPDLL 102 (157)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHhcCCCEE
Confidence 344789999999999999999998754421 12222211110 000 11 112234455555566778
Q ss_pred EEec--CCCCHHHHHHHHHh
Q 007244 82 FLDR--CNLEREQRTDFVKL 99 (611)
Q Consensus 82 IID~--tnl~~~~R~~~~~l 99 (611)
|+|. .++....+..+.++
T Consensus 103 ilDEp~~~lD~~~~~~l~~~ 122 (157)
T cd00267 103 LLDEPTSGLDPASRERLLEL 122 (157)
T ss_pred EEeCCCcCCCHHHHHHHHHH
Confidence 8887 33555556655554
No 449
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=94.53 E-value=0.58 Score=45.33 Aligned_cols=28 Identities=25% Similarity=0.306 Sum_probs=24.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCC
Q 007244 20 QILVIMVGAPGSGKSTFCEHVMRSSARP 47 (611)
Q Consensus 20 p~LIvLvG~PGSGKST~A~~L~~~~~~~ 47 (611)
-+.|.++|+-.|||||++++|+..++.+
T Consensus 8 ~K~VailG~ESsGKStLv~kLA~~fnt~ 35 (187)
T COG3172 8 VKTVAILGGESSGKSTLVNKLANIFNTT 35 (187)
T ss_pred heeeeeecCcccChHHHHHHHHHHhCCC
Confidence 3678999999999999999999998743
No 450
>PF03976 PPK2: Polyphosphate kinase 2 (PPK2); InterPro: IPR022488 This presumed domain is found in one or two copies per protein. The domain is about 230 amino acids in length and has many conserved motifs, it has polyphosphate kinase activity [, ].; PDB: 3CZP_A 3RHF_D 3CZQ_B.
Probab=94.52 E-value=0.025 Score=57.57 Aligned_cols=109 Identities=16% Similarity=0.064 Sum_probs=65.1
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeec-----chhccCCCCcHHHHHHHHHHHHHCCCcEEEecCCCCHH
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ-----DTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNLERE 91 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~-----D~i~~~~~~~~~~~~~~~~~~L~~Gk~VIID~tnl~~~ 91 (611)
.+.|+||+|-|..||||+.+++.|.+.++..++.+-. +.-....+. | .--...=..|..+|+|+..+...
T Consensus 28 ~~~~vlIl~eG~d~sGKg~~I~~l~~~lDPR~~~v~~~~~pt~eE~~~p~l-w----Rfw~~lP~~G~I~if~rSWY~~~ 102 (228)
T PF03976_consen 28 AGIPVLILFEGWDASGKGGTINRLIEWLDPRGFRVHAFGKPTDEELRRPFL-W----RFWRALPARGQIGIFDRSWYEDV 102 (228)
T ss_dssp HHHEEEEEEEESTTSSHHHHHHHHHCCS-GGGEEEEE-SS--HHHHTS-TT-H----HHHTTS--TT-EEEEES-GGGGG
T ss_pred cCCcEEEEEeccccCCchHHHHHHHHhCCCCeeEEEeCCCCChhHcCCCcH-H----HHHHhCCCCCEEEEEecchhhHH
Confidence 3467999999999999999999999887755443321 110000110 0 11111124567777777544431
Q ss_pred H-------------------HHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccC
Q 007244 92 Q-------------------RTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEG 130 (611)
Q Consensus 92 ~-------------------R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g 130 (611)
- ...|-+. ...|+.++-+||.++.++..+|+.+|...+.
T Consensus 103 l~~rv~~~~~~~~~~~~~~~I~~FEr~L~~~G~~IiKfflhIsk~eQ~kRl~~~~~~p~ 161 (228)
T PF03976_consen 103 LVERVEGFIDEAEWERRLEEINRFERMLADDGTLIIKFFLHISKKEQKKRLKEREEDPL 161 (228)
T ss_dssp THHHHTTSSTHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEE--HHHHHHHHHHHHHSCC
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHCCCeEEEEEEEeCHHHHHHHHHHHhcCcc
Confidence 1 1112233 5678889999999999999999999987643
No 451
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=94.52 E-value=0.23 Score=57.45 Aligned_cols=30 Identities=20% Similarity=0.264 Sum_probs=26.4
Q ss_pred cCCCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (611)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~ 45 (611)
....+.-++|.||+|+||||+|+.+++.+.
T Consensus 42 ~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~ 71 (598)
T PRK09111 42 TGRIAQAFMLTGVRGVGKTTTARILARALN 71 (598)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHHhhC
Confidence 455677899999999999999999999876
No 452
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=94.50 E-value=0.038 Score=54.57 Aligned_cols=38 Identities=21% Similarity=0.385 Sum_probs=28.2
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecc
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQD 54 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D 54 (611)
-++..++.+.|+||||||+|+.+++... +.....|+.+
T Consensus 9 i~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e 49 (209)
T TIGR02237 9 VERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTE 49 (209)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 4567899999999999999999987542 3334455554
No 453
>PRK09169 hypothetical protein; Validated
Probab=94.49 E-value=0.12 Score=66.19 Aligned_cols=95 Identities=11% Similarity=-0.005 Sum_probs=63.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhc--------------cCCCCcHHHHHHHHHHHHHCCCcEEEecC
Q 007244 21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN--------------KGKSGTKVQCLTSASSALKKGKSVFLDRC 86 (611)
Q Consensus 21 ~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~--------------~~~~~~~~~~~~~~~~~L~~Gk~VIID~t 86 (611)
.-|+|+|++|+||||+++.+...++..+ ++.|... .| ..++.....+.+.++ ..+||..-
T Consensus 2111 ~aIvLIG~MGaGKTTIGr~LA~~Lg~~F--iDtD~kIeks~GrkI~rIFa~eG--~FRe~Eaa~V~Dllr--~~vVLSTG 2184 (2316)
T PRK09169 2111 QARRIEREVGPLLQALLQKLAGGLRVDK--PHSVRKIAKKIGKKIARIQALRG--LSPEQAAARVRDALR--WEVVLPAE 2184 (2316)
T ss_pred cccceeeCCCCCHhHHHHHHHHHhCCCc--cccHHHHHHHhCCCHHHHHHhcC--chHHHHHHHHHHHhc--CCeEEeCC
Confidence 3589999999999999999999999666 5444331 12 223333355556554 56666653
Q ss_pred CCCH---HHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244 87 NLER---EQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (611)
Q Consensus 87 nl~~---~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~ 127 (611)
.+.. ..|..+ +..|+ +||+..+.+++.+|+.....
T Consensus 2185 GGav~~~enr~~L---~~~Gl---vV~L~an~~tl~~Rty~g~N 2222 (2316)
T PRK09169 2185 GFGAAVEQARQAL---GAKGL---RVMRINNGFAAPDTTYAGLN 2222 (2316)
T ss_pred CCcccCHHHHHHH---HHCCE---EEEEECCHHHHHHHhccCCC
Confidence 3332 333333 55676 89999999999999865543
No 454
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=94.48 E-value=0.037 Score=55.06 Aligned_cols=37 Identities=19% Similarity=0.291 Sum_probs=27.9
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeec
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQ 53 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~ 53 (611)
-++..++.+.|+||||||||+.+++... +.....++.
T Consensus 16 i~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~ 55 (218)
T cd01394 16 VERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDT 55 (218)
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEC
Confidence 3567899999999999999999988653 233444554
No 455
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.48 E-value=0.22 Score=57.91 Aligned_cols=28 Identities=18% Similarity=0.264 Sum_probs=24.2
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~ 45 (611)
..+.-++|.|++|+||||+|+.+++.+.
T Consensus 36 rl~~a~Lf~Gp~G~GKttlA~~lAk~L~ 63 (620)
T PRK14948 36 RIAPAYLFTGPRGTGKTSSARILAKSLN 63 (620)
T ss_pred CCCceEEEECCCCCChHHHHHHHHHHhc
Confidence 3445689999999999999999999876
No 456
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=94.45 E-value=0.027 Score=62.00 Aligned_cols=26 Identities=38% Similarity=0.611 Sum_probs=22.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244 20 QILVIMVGAPGSGKSTFCEHVMRSSA 45 (611)
Q Consensus 20 p~LIvLvG~PGSGKST~A~~L~~~~~ 45 (611)
..=|++.|+||+||||||+++++-+.
T Consensus 263 aeGILIAG~PGaGKsTFaqAlAefy~ 288 (604)
T COG1855 263 AEGILIAGAPGAGKSTFAQALAEFYA 288 (604)
T ss_pred hcceEEecCCCCChhHHHHHHHHHHH
Confidence 44589999999999999999988554
No 457
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=94.44 E-value=0.039 Score=44.91 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Q 007244 21 ILVIMVGAPGSGKSTFCEHVMRS 43 (611)
Q Consensus 21 ~LIvLvG~PGSGKST~A~~L~~~ 43 (611)
.+.+|+|++||||||+..++.--
T Consensus 24 ~~tli~G~nGsGKSTllDAi~~~ 46 (62)
T PF13555_consen 24 DVTLITGPNGSGKSTLLDAIQTV 46 (62)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999987643
No 458
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.43 E-value=0.036 Score=52.10 Aligned_cols=24 Identities=29% Similarity=0.490 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcC
Q 007244 22 LVIMVGAPGSGKSTFCEHVMRSSA 45 (611)
Q Consensus 22 LIvLvG~PGSGKST~A~~L~~~~~ 45 (611)
+|.++|+.+|||||+++.|...+.
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l~ 25 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINELK 25 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 689999999999999999987654
No 459
>PF13479 AAA_24: AAA domain
Probab=94.42 E-value=0.11 Score=52.15 Aligned_cols=22 Identities=41% Similarity=0.809 Sum_probs=20.1
Q ss_pred CcEEEEEEcCCCCcHHHHHHHH
Q 007244 19 KQILVIMVGAPGSGKSTFCEHV 40 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L 40 (611)
.+.-++|.|+||+||||+|..+
T Consensus 2 ~~~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 2 KPIKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred CceEEEEECCCCCCHHHHHHhC
Confidence 4677999999999999999988
No 460
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=94.42 E-value=0.03 Score=60.16 Aligned_cols=25 Identities=28% Similarity=0.469 Sum_probs=21.9
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHH
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMR 42 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~ 42 (611)
.....++|+||+||||||+.+.++-
T Consensus 27 ~~Gef~vllGPSGcGKSTlLr~IAG 51 (338)
T COG3839 27 EDGEFVVLLGPSGCGKSTLLRMIAG 51 (338)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4456899999999999999999875
No 461
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=94.33 E-value=0.045 Score=58.61 Aligned_cols=29 Identities=21% Similarity=0.249 Sum_probs=25.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCe
Q 007244 20 QILVIMVGAPGSGKSTFCEHVMRSSARPW 48 (611)
Q Consensus 20 p~LIvLvG~PGSGKST~A~~L~~~~~~~~ 48 (611)
...|+|+|+|||||||+++.|+..++..+
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~~~~~~~ 190 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAAVFNTTS 190 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCCE
Confidence 45799999999999999999999888655
No 462
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=94.29 E-value=0.12 Score=56.05 Aligned_cols=27 Identities=30% Similarity=0.570 Sum_probs=22.9
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSS 44 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~ 44 (611)
..+..+++.|+||+||||+++.+++.+
T Consensus 53 ~~~~~~lI~G~~GtGKT~l~~~v~~~l 79 (394)
T PRK00411 53 SRPLNVLIYGPPGTGKTTTVKKVFEEL 79 (394)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 345567899999999999999998765
No 463
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=94.28 E-value=0.049 Score=64.90 Aligned_cols=35 Identities=26% Similarity=0.563 Sum_probs=30.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeec
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ 53 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~ 53 (611)
++..++|+||||+||||+|+.+++.++..+.+++.
T Consensus 346 ~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~ 380 (775)
T TIGR00763 346 KGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSL 380 (775)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeC
Confidence 33479999999999999999999999888877763
No 464
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=94.28 E-value=0.039 Score=63.70 Aligned_cols=37 Identities=24% Similarity=0.499 Sum_probs=33.8
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeec
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ 53 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~ 53 (611)
.-+..++-|+||||.|||++++.+++.+++.|++++.
T Consensus 435 s~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSv 471 (906)
T KOG2004|consen 435 SVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSV 471 (906)
T ss_pred cCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEec
Confidence 4567899999999999999999999999999999984
No 465
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=94.27 E-value=0.55 Score=51.69 Aligned_cols=27 Identities=22% Similarity=0.337 Sum_probs=24.4
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSSA 45 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~~ 45 (611)
.+.-++|.||||+||||+|+.+++.+.
T Consensus 35 l~ha~Lf~Gp~G~GKt~lA~~lA~~l~ 61 (394)
T PRK07940 35 MTHAWLFTGPPGSGRSVAARAFAAALQ 61 (394)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 678899999999999999999998754
No 466
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=94.27 E-value=0.044 Score=52.25 Aligned_cols=34 Identities=24% Similarity=0.464 Sum_probs=26.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh
Q 007244 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (611)
Q Consensus 20 p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i 56 (611)
..-|+|+|+||+||||+|..+.++ + +..++.|..
T Consensus 14 g~gvLi~G~sG~GKStlal~L~~~-g--~~lvaDD~v 47 (149)
T cd01918 14 GIGVLITGPSGIGKSELALELIKR-G--HRLVADDRV 47 (149)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc-C--CeEEECCEE
Confidence 356899999999999999998876 3 444655544
No 467
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=94.25 E-value=0.24 Score=56.91 Aligned_cols=30 Identities=13% Similarity=0.223 Sum_probs=26.1
Q ss_pred cCCCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (611)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~ 45 (611)
....+..++|+||+|+||||+|+.+++.+.
T Consensus 34 ~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~ 63 (559)
T PRK05563 34 QGKISHAYLFSGPRGTGKTSAAKIFAKAVN 63 (559)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 345678899999999999999999998865
No 468
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.24 E-value=0.44 Score=53.92 Aligned_cols=30 Identities=20% Similarity=0.285 Sum_probs=26.0
Q ss_pred cCCCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (611)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~ 45 (611)
....+..++|.|++|+||||+|+.+++.++
T Consensus 34 ~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~ 63 (486)
T PRK14953 34 LQRVSHAYIFAGPRGTGKTTIARILAKVLN 63 (486)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 345677899999999999999999999865
No 469
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=94.23 E-value=0.4 Score=52.36 Aligned_cols=104 Identities=18% Similarity=0.159 Sum_probs=58.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcC-----CCeEEeecchhc---cC----------CCCcH-HHHHHHHHHHHHCCCc
Q 007244 20 QILVIMVGAPGSGKSTFCEHVMRSSA-----RPWARICQDTIN---KG----------KSGTK-VQCLTSASSALKKGKS 80 (611)
Q Consensus 20 p~LIvLvG~PGSGKST~A~~L~~~~~-----~~~~~Is~D~i~---~~----------~~~~~-~~~~~~~~~~L~~Gk~ 80 (611)
.-+|+++|++||||||+.+.+..... ...+.| .|-+. .+ +.+.. ..+...++.+|+..-+
T Consensus 149 ~GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~Ivti-Edp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD 227 (372)
T TIGR02525 149 AGLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTY-EDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPK 227 (372)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEE-ecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCC
Confidence 34789999999999999999977652 112222 12111 00 11110 1233677888888888
Q ss_pred EEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhc
Q 007244 81 VFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKR 125 (611)
Q Consensus 81 VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R 125 (611)
+|+=+--...+....+++. ..-+.-+..+. --+......|+..-
T Consensus 228 ~I~vGEiRd~et~~~al~aa~TGH~v~tTlH-a~s~~~ai~Rl~~~ 272 (372)
T TIGR02525 228 IIGVGEIRDLETFQAAVLAGQSGHFCLGTLH-VKSPGEAISRCLQM 272 (372)
T ss_pred EEeeCCCCCHHHHHHHHHHHhcCCcEEEeeC-CCCHHHHHHHHHHh
Confidence 8777755555555544544 22222222333 23556678887653
No 470
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=94.22 E-value=0.39 Score=52.19 Aligned_cols=106 Identities=18% Similarity=0.121 Sum_probs=59.1
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcC---C-C-eEEeecchhc---cCC-----------CCc-HHHHHHHHHHHHHCC
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSSA---R-P-WARICQDTIN---KGK-----------SGT-KVQCLTSASSALKKG 78 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~~---~-~-~~~Is~D~i~---~~~-----------~~~-~~~~~~~~~~~L~~G 78 (611)
+..+|+++||+||||||+.+.+..... . . .+..-.|-+. .+. ... ...+...++.+|+..
T Consensus 133 ~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR~~ 212 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQSEIPRHLNNFAAGVRNALRRK 212 (358)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeeeeccccccCHHHHHHHHhccC
Confidence 457999999999999999999987652 1 1 1111122221 010 000 012346677888888
Q ss_pred CcEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhc
Q 007244 79 KSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKR 125 (611)
Q Consensus 79 k~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R 125 (611)
-++|+=+--...+....+++. ..-+.-+..+. -.+......|+..-
T Consensus 213 Pd~i~vGEiRd~et~~~al~aa~tGh~v~tTlH-a~~~~~~i~Rl~~~ 259 (358)
T TIGR02524 213 PHAILVGEARDAETISAALEAALTGHPVYTTLH-SSGVAETIRRLVGS 259 (358)
T ss_pred CCEEeeeeeCCHHHHHHHHHHHHcCCcEEEeec-cCCHHHHHHHHHHh
Confidence 887776644444444445444 22232222222 23556678887654
No 471
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=94.17 E-value=0.036 Score=53.00 Aligned_cols=24 Identities=29% Similarity=0.558 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcC
Q 007244 22 LVIMVGAPGSGKSTFCEHVMRSSA 45 (611)
Q Consensus 22 LIvLvG~PGSGKST~A~~L~~~~~ 45 (611)
+|.++|++||||||++.++...+.
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~ 24 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALK 24 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999988643
No 472
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=94.16 E-value=0.54 Score=49.81 Aligned_cols=104 Identities=17% Similarity=0.214 Sum_probs=55.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCC---CeEEee-cch--hc--c-CCC----CcHH-HHHHHHHHHHHCCCcEEEec
Q 007244 20 QILVIMVGAPGSGKSTFCEHVMRSSAR---PWARIC-QDT--IN--K-GKS----GTKV-QCLTSASSALKKGKSVFLDR 85 (611)
Q Consensus 20 p~LIvLvG~PGSGKST~A~~L~~~~~~---~~~~Is-~D~--i~--~-~~~----~~~~-~~~~~~~~~L~~Gk~VIID~ 85 (611)
...|+++|++||||||+++.+...... ....+. .|. +. . ... .... ...+.+..+|+.+-+.|+=+
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~iivG 211 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIVG 211 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEEEe
Confidence 357889999999999999999876531 111222 111 11 0 000 0001 23467778888887766655
Q ss_pred CCCCHHHHHHHHHh--CCCCCeEEEEEEeCCHHHHHHHHHhc
Q 007244 86 CNLEREQRTDFVKL--GGPEVDVHAVVLDLPAKLCISRSVKR 125 (611)
Q Consensus 86 tnl~~~~R~~~~~l--~~~~~~v~vV~Ld~p~e~~~~Rl~~R 125 (611)
--...+. ..+++. ..+...+..+.-+ +......|+..-
T Consensus 212 EiR~~ea-~~~l~a~~tGh~G~~tTiHa~-~~~~ai~Rl~~l 251 (299)
T TIGR02782 212 EVRGGEA-LDLLKAWNTGHPGGIATIHAN-NAKAALDRLEQL 251 (299)
T ss_pred ccCCHHH-HHHHHHHHcCCCCeEEeeccC-CHHHHHHHHHHH
Confidence 4444443 334443 2222234444443 444566777544
No 473
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=94.14 E-value=0.23 Score=51.41 Aligned_cols=22 Identities=32% Similarity=0.587 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 007244 22 LVIMVGAPGSGKSTFCEHVMRS 43 (611)
Q Consensus 22 LIvLvG~PGSGKST~A~~L~~~ 43 (611)
.|+|+|.||+|||||.+++...
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~ 23 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQ 23 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999864
No 474
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=94.14 E-value=0.032 Score=55.65 Aligned_cols=22 Identities=36% Similarity=0.813 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHc
Q 007244 23 VIMVGAPGSGKSTFCEHVMRSS 44 (611)
Q Consensus 23 IvLvG~PGSGKST~A~~L~~~~ 44 (611)
|++.|+|||||||++++++...
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~ 22 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR 22 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc
Confidence 5889999999999999999873
No 475
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=94.13 E-value=0.049 Score=59.19 Aligned_cols=30 Identities=23% Similarity=0.444 Sum_probs=26.2
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHcCCC
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARP 47 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~ 47 (611)
..|.+|.++|++||||||+++++...+...
T Consensus 3 ~~~~~i~i~G~~gsGKTTl~~~l~~~l~~~ 32 (369)
T PRK14490 3 FHPFEIAFCGYSGSGKTTLITALVRRLSER 32 (369)
T ss_pred CCCEEEEEEeCCCCCHHHHHHHHHHHHhhC
Confidence 457899999999999999999999887633
No 476
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=94.12 E-value=0.082 Score=55.37 Aligned_cols=70 Identities=19% Similarity=0.271 Sum_probs=44.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHHHHHHHHHHCCCcEEEecCCCCHHHHHH
Q 007244 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNLEREQRTD 95 (611)
Q Consensus 20 p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L~~Gk~VIID~tnl~~~~R~~ 95 (611)
.=-++|.||||-||||+|.-++.+.+..+...+...+ .+.-=+..+...|..|....||-.+.-.....+
T Consensus 52 lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~l------eK~gDlaaiLt~Le~~DVLFIDEIHrl~~~vEE 121 (332)
T COG2255 52 LDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPAL------EKPGDLAAILTNLEEGDVLFIDEIHRLSPAVEE 121 (332)
T ss_pred cCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccc------cChhhHHHHHhcCCcCCeEEEehhhhcChhHHH
Confidence 3468999999999999999999999855443333332 111112344455677777777775533333333
No 477
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.11 E-value=0.052 Score=57.55 Aligned_cols=36 Identities=22% Similarity=0.433 Sum_probs=30.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh
Q 007244 21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (611)
Q Consensus 21 ~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i 56 (611)
.-|+|+||+|||||-+|+-|++.++.||..-+.-.+
T Consensus 98 SNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtL 133 (408)
T COG1219 98 SNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTL 133 (408)
T ss_pred ccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccch
Confidence 469999999999999999999999988865554444
No 478
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.08 E-value=0.042 Score=53.68 Aligned_cols=26 Identities=35% Similarity=0.530 Sum_probs=22.3
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRS 43 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~ 43 (611)
+...++.|+||+||||||+.+.++..
T Consensus 19 ~~G~~~~l~G~nG~GKSTLl~~il~~ 44 (176)
T cd03238 19 PLNVLVVVTGVSGSGKSTLVNEGLYA 44 (176)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhc
Confidence 45678999999999999999988643
No 479
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.07 E-value=0.3 Score=51.09 Aligned_cols=38 Identities=18% Similarity=0.243 Sum_probs=28.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEeecchh
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTI 56 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~~---~~~~~Is~D~i 56 (611)
++..++|+|++|+||||+++.++..+. .....++.|..
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ 114 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHS 114 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 457999999999999999999876642 23445666654
No 480
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=94.07 E-value=0.055 Score=55.79 Aligned_cols=105 Identities=16% Similarity=0.192 Sum_probs=55.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCC-eEEee-cch--hc-cCCC-------CcHHHHHHHHHHHHHCCCcEEEecCC
Q 007244 20 QILVIMVGAPGSGKSTFCEHVMRSSARP-WARIC-QDT--IN-KGKS-------GTKVQCLTSASSALKKGKSVFLDRCN 87 (611)
Q Consensus 20 p~LIvLvG~PGSGKST~A~~L~~~~~~~-~~~Is-~D~--i~-~~~~-------~~~~~~~~~~~~~L~~Gk~VIID~tn 87 (611)
..+|+++|++||||||+.+.++...+.. ...+. .|. +. .+.. .......+.+..+|+.+-++|+=+--
T Consensus 127 ~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEi 206 (270)
T PF00437_consen 127 RGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRLPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEI 206 (270)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE
T ss_pred ceEEEEECCCccccchHHHHHhhhccccccceEEeccccceeecccceEEEEeecCcccHHHHHHHHhcCCCCccccccc
Confidence 6789999999999999999999877644 32222 121 11 1100 01112346677788887776555533
Q ss_pred CCHHHHHHHHHh--CCCCCeEEEEEEeCCHHHHHHHHHhcc
Q 007244 88 LEREQRTDFVKL--GGPEVDVHAVVLDLPAKLCISRSVKRI 126 (611)
Q Consensus 88 l~~~~R~~~~~l--~~~~~~v~vV~Ld~p~e~~~~Rl~~R~ 126 (611)
...+.-.- ++. ..+...+..+.-+ +......|+..=.
T Consensus 207 R~~e~~~~-~~a~~tGh~~~~tT~Ha~-s~~~~i~Rl~~l~ 245 (270)
T PF00437_consen 207 RDPEAAEA-IQAANTGHLGSLTTLHAN-SAEDAIERLADLG 245 (270)
T ss_dssp -SCHHHHH-HHHHHTT-EEEEEEEE-S-SHHHHHHHHHHHC
T ss_pred CCHhHHHH-HHhhccCCceeeeeeecC-CHHHHHHHHHHHh
Confidence 33332222 333 2222223444433 5566777876543
No 481
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=94.05 E-value=0.042 Score=54.39 Aligned_cols=27 Identities=30% Similarity=0.501 Sum_probs=23.3
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSS 44 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~ 44 (611)
.+..++.|+|++||||||+.+.++..+
T Consensus 25 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 25 SAGEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 456789999999999999999998654
No 482
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=94.05 E-value=0.042 Score=54.58 Aligned_cols=27 Identities=37% Similarity=0.386 Sum_probs=23.3
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSS 44 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~ 44 (611)
.+..++.|+|++||||||+.+.++...
T Consensus 28 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 28 EKGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 356789999999999999999998654
No 483
>PRK05973 replicative DNA helicase; Provisional
Probab=94.04 E-value=0.068 Score=54.78 Aligned_cols=36 Identities=19% Similarity=0.185 Sum_probs=26.8
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeec
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQ 53 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~ 53 (611)
++..++++.|.||+|||+|+.+++... +.....++.
T Consensus 62 ~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSl 100 (237)
T PRK05973 62 KPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTL 100 (237)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEE
Confidence 456799999999999999999876532 444444553
No 484
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.04 E-value=0.045 Score=54.13 Aligned_cols=27 Identities=37% Similarity=0.406 Sum_probs=23.4
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSS 44 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~ 44 (611)
....++.|+|++||||||+++.++...
T Consensus 25 ~~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 25 KKGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 456789999999999999999998653
No 485
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=94.03 E-value=0.043 Score=52.97 Aligned_cols=25 Identities=20% Similarity=0.457 Sum_probs=22.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244 20 QILVIMVGAPGSGKSTFCEHVMRSS 44 (611)
Q Consensus 20 p~LIvLvG~PGSGKST~A~~L~~~~ 44 (611)
+..++|+|++|+|||||.+.|....
T Consensus 35 ~k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 35 GKTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3789999999999999999998753
No 486
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=94.03 E-value=0.042 Score=53.91 Aligned_cols=23 Identities=26% Similarity=0.612 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHc
Q 007244 22 LVIMVGAPGSGKSTFCEHVMRSS 44 (611)
Q Consensus 22 LIvLvG~PGSGKST~A~~L~~~~ 44 (611)
+.++.||||+||||++..+....
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHHh
Confidence 78999999999999888877664
No 487
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=94.03 E-value=0.044 Score=53.42 Aligned_cols=27 Identities=30% Similarity=0.378 Sum_probs=22.9
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSS 44 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~ 44 (611)
.+..++.|+|++||||||+.+.++...
T Consensus 16 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 16 ERGEVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 355689999999999999999987643
No 488
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=94.02 E-value=0.074 Score=56.05 Aligned_cols=38 Identities=34% Similarity=0.492 Sum_probs=28.4
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHHcCC--CeEEeecc
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSAR--PWARICQD 54 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~~--~~~~Is~D 54 (611)
.....+|.|+|+||||||||.+++...+.. ...+|..|
T Consensus 101 ~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~gD 140 (290)
T PRK10463 101 ARKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGD 140 (290)
T ss_pred hcCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEECCC
Confidence 345678999999999999999999887542 34445433
No 489
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=94.02 E-value=0.042 Score=54.57 Aligned_cols=27 Identities=37% Similarity=0.567 Sum_probs=23.3
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSS 44 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~ 44 (611)
....++.|+|++||||||+.+.++...
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 27 TKGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456789999999999999999998654
No 490
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=94.01 E-value=0.039 Score=62.99 Aligned_cols=29 Identities=24% Similarity=0.429 Sum_probs=24.8
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~ 45 (611)
..+..+++|+||||+|||||++.|++.+.
T Consensus 100 ~~~~~IL~LvGPpG~GKSsLa~~la~~le 128 (644)
T PRK15455 100 EEKKQILYLLGPVGGGKSSLAERLKSLME 128 (644)
T ss_pred CCCCceEEEecCCCCCchHHHHHHHHHHH
Confidence 44567999999999999999999987654
No 491
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=93.98 E-value=0.046 Score=54.39 Aligned_cols=27 Identities=26% Similarity=0.405 Sum_probs=23.2
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSS 44 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~ 44 (611)
.+..++.|+|++|||||||.+.++...
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 24 PEGEIVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 456799999999999999999887543
No 492
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.96 E-value=0.089 Score=61.30 Aligned_cols=115 Identities=15% Similarity=0.178 Sum_probs=68.9
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHHHHHHHHHHCCCcEEEecCCCCHHHHHHH
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNLEREQRTDF 96 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L~~Gk~VIID~tnl~~~~R~~~ 96 (611)
-.+..=|+|-||||+|||-+|++++-++...|..|-..++-+...+..++....+.+..++...
T Consensus 702 lrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMYVGqSE~NVR~VFerAR~A~P---------------- 765 (953)
T KOG0736|consen 702 LRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMYVGQSEENVREVFERARSAAP---------------- 765 (953)
T ss_pred ccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHHhcchHHHHHHHHHHhhccCC----------------
Confidence 3446789999999999999999999998866655655555555555555444444433333332
Q ss_pred HHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhccCCCccCCccEEEEcC
Q 007244 97 VKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQ 164 (611)
Q Consensus 97 ~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~e~P~~~EgFd~V~vv~ 164 (611)
.+||||==... .-+|++. +.++.+.+.++.++++.+.-..-. .-++|+++-
T Consensus 766 ----------CVIFFDELDSl----AP~RG~s--GDSGGVMDRVVSQLLAELDgls~~-~s~~VFViG 816 (953)
T KOG0736|consen 766 ----------CVIFFDELDSL----APNRGRS--GDSGGVMDRVVSQLLAELDGLSDS-SSQDVFVIG 816 (953)
T ss_pred ----------eEEEecccccc----CccCCCC--CCccccHHHHHHHHHHHhhcccCC-CCCceEEEe
Confidence 25555521111 1234331 134578888888888876444422 224566664
No 493
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=93.96 E-value=0.044 Score=54.27 Aligned_cols=27 Identities=22% Similarity=0.417 Sum_probs=23.1
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSS 44 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~ 44 (611)
.+..++.|+|++||||||+++.++...
T Consensus 26 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 26 RKGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 455789999999999999999987643
No 494
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=93.94 E-value=0.044 Score=49.38 Aligned_cols=22 Identities=32% Similarity=0.671 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 007244 22 LVIMVGAPGSGKSTFCEHVMRS 43 (611)
Q Consensus 22 LIvLvG~PGSGKST~A~~L~~~ 43 (611)
=|+|+|.+|||||||.+++...
T Consensus 3 ki~~~G~~~~GKstl~~~l~~~ 24 (161)
T TIGR00231 3 KIVIVGDPNVGKSTLLNRLLGN 24 (161)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3899999999999999998764
No 495
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=93.92 E-value=0.086 Score=52.78 Aligned_cols=38 Identities=21% Similarity=0.379 Sum_probs=28.7
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecc
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQD 54 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D 54 (611)
-+...++.+.|+||+|||+||.+++... +.....++.+
T Consensus 20 i~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 20 FERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 3557899999999999999999987632 3344555554
No 496
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=93.92 E-value=0.059 Score=60.73 Aligned_cols=67 Identities=15% Similarity=0.128 Sum_probs=0.0
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHH----HHHcCCCeEEeecchhccCCCCcHHHHHHHHHHHHHCCCcEEEe
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHV----MRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLD 84 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L----~~~~~~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L~~Gk~VIID 84 (611)
++..++++.|+|||||||||.++ +++.+.....|+.+.-.++.......+--.+......|...++|
T Consensus 19 p~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~~~~l~~~~~~~G~~~~~~~~~g~l~~~~ 89 (484)
T TIGR02655 19 PIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEESPQDIIKNARSFGWDLQKLVDEGKLFILD 89 (484)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCHHHHHHHHHHcCCCHHHHhhcCceEEEe
No 497
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=93.91 E-value=0.045 Score=49.78 Aligned_cols=21 Identities=19% Similarity=0.593 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 007244 23 VIMVGAPGSGKSTFCEHVMRS 43 (611)
Q Consensus 23 IvLvG~PGSGKST~A~~L~~~ 43 (611)
|+++|+|||||||+.+++...
T Consensus 3 i~~~G~~~~GKStl~~~l~~~ 23 (159)
T cd00154 3 IVLIGDSGVGKTSLLLRFVDG 23 (159)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999998754
No 498
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.90 E-value=0.048 Score=53.94 Aligned_cols=27 Identities=22% Similarity=0.283 Sum_probs=23.4
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSS 44 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~ 44 (611)
....++.|+|++||||||+.+.++...
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 24 EKGEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 456789999999999999999998653
No 499
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=93.89 E-value=0.048 Score=53.95 Aligned_cols=27 Identities=33% Similarity=0.457 Sum_probs=23.3
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSS 44 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~ 44 (611)
.+..++.|+|++|||||||.+.++...
T Consensus 24 ~~G~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 24 KKGEVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456789999999999999999998643
No 500
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=93.89 E-value=0.046 Score=53.91 Aligned_cols=27 Identities=19% Similarity=0.401 Sum_probs=23.3
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSS 44 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~ 44 (611)
.+..++.|+|++||||||+.+.++...
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 24 YAGEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 456799999999999999999997643
Done!