Query 007244
Match_columns 611
No_of_seqs 393 out of 3383
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 20:52:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007244.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007244hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3eti_A X (ADRP) domain, macro 99.9 1.6E-27 5.5E-32 228.0 6.5 110 343-477 10-126 (168)
2 3q71_A Poly [ADP-ribose] polym 99.9 1.2E-26 4.1E-31 230.9 12.4 120 338-478 34-160 (221)
3 3q6z_A Poly [ADP-ribose] polym 99.9 2.7E-26 9.2E-31 227.6 11.0 119 339-478 33-159 (214)
4 1spv_A Putative polyprotein/ph 99.9 1.2E-25 4E-30 218.5 13.6 115 342-478 2-124 (184)
5 1yd9_A Core histone macro-H2A. 99.9 1.4E-25 4.8E-30 219.4 13.3 115 340-478 16-138 (193)
6 2xd7_A Core histone macro-H2A. 99.9 1.4E-25 4.9E-30 219.4 13.0 115 340-478 16-141 (193)
7 4abl_A Poly [ADP-ribose] polym 99.9 2.2E-25 7.5E-30 216.2 10.2 111 334-477 13-128 (183)
8 2x47_A Macro domain-containing 99.9 3E-25 1E-29 223.1 11.5 115 342-478 61-180 (235)
9 3ejg_A Non-structural protein 99.9 5.1E-25 1.7E-29 214.5 7.6 108 342-477 37-151 (193)
10 2dx6_A Hypothetical protein TT 99.9 5.5E-24 1.9E-28 201.9 11.1 110 343-478 2-116 (159)
11 3kh6_A Poly [ADP-ribose] polym 99.9 7.1E-24 2.4E-28 207.9 10.2 111 335-478 25-140 (199)
12 3gqe_A Non-structural protein 99.9 3.8E-24 1.3E-28 204.6 7.7 107 342-478 3-114 (168)
13 2acf_A Replicase polyprotein 1 99.9 2.4E-24 8.3E-29 208.6 6.4 110 342-477 19-135 (182)
14 3gpg_A NSP3, non-structural pr 99.9 3.1E-24 1.1E-28 205.1 7.0 106 343-478 10-120 (168)
15 2vri_A Non-structural protein 99.9 6.4E-24 2.2E-28 204.4 7.6 113 342-478 16-131 (174)
16 1vhu_A Hypothetical protein AF 99.9 1.4E-23 4.7E-28 208.0 10.2 120 334-478 12-152 (211)
17 3ejf_A Non-structural protein 99.9 6.4E-24 2.2E-28 204.2 6.1 119 339-478 10-134 (176)
18 1njr_A 32.1 kDa protein in ADH 99.9 6.8E-22 2.3E-26 203.2 11.0 135 342-478 44-196 (284)
19 4gua_A Non-structural polyprot 99.8 3.9E-21 1.3E-25 208.0 11.4 161 288-478 269-454 (670)
20 3zvl_A Bifunctional polynucleo 99.7 3.7E-17 1.3E-21 177.1 14.7 142 16-165 254-396 (416)
21 2jyc_A Uncharacterized protein 99.7 4.7E-17 1.6E-21 154.5 9.2 108 341-478 18-131 (160)
22 2eee_A Uncharacterized protein 99.7 3.8E-17 1.3E-21 153.4 7.9 108 341-478 7-120 (149)
23 2fg1_A Conserved hypothetical 99.6 2.3E-16 7.8E-21 149.4 8.9 119 342-478 3-129 (158)
24 1ly1_A Polynucleotide kinase; 99.6 5.4E-16 1.8E-20 145.9 10.4 129 19-155 1-150 (181)
25 3a4m_A L-seryl-tRNA(SEC) kinas 99.5 1.5E-13 5E-18 139.3 16.4 128 19-154 3-142 (260)
26 1ltq_A Polynucleotide kinase; 99.5 4.6E-14 1.6E-18 144.7 11.3 127 19-153 1-148 (301)
27 3t61_A Gluconokinase; PSI-biol 99.5 1.1E-12 3.6E-17 126.9 16.6 144 18-174 16-171 (202)
28 1gvn_B Zeta; postsegregational 99.4 5.7E-13 1.9E-17 137.4 13.9 151 16-166 29-207 (287)
29 1knq_A Gluconate kinase; ALFA/ 99.4 7.9E-12 2.7E-16 117.8 19.1 145 17-174 5-165 (175)
30 3sr0_A Adenylate kinase; phosp 99.4 1.3E-12 4.6E-17 128.5 12.6 105 22-128 2-127 (206)
31 1qhx_A CPT, protein (chloramph 99.4 5.9E-12 2E-16 118.6 15.9 108 19-128 2-136 (178)
32 1qf9_A UMP/CMP kinase, protein 99.4 9E-12 3.1E-16 118.0 16.2 127 17-146 3-151 (194)
33 4eun_A Thermoresistant glucoki 99.4 1.2E-11 4.2E-16 119.6 16.8 146 16-175 25-186 (200)
34 3umf_A Adenylate kinase; rossm 99.3 4.6E-12 1.6E-16 125.8 12.7 124 15-144 24-171 (217)
35 1tev_A UMP-CMP kinase; ploop, 99.3 9.6E-12 3.3E-16 118.0 14.5 107 19-127 2-136 (196)
36 3tlx_A Adenylate kinase 2; str 99.3 9.2E-12 3.1E-16 124.9 12.9 109 18-128 27-159 (243)
37 2p5t_B PEZT; postsegregational 99.3 8.8E-12 3E-16 125.5 12.7 112 16-127 28-159 (253)
38 1ex7_A Guanylate kinase; subst 99.3 3.2E-12 1.1E-16 124.0 8.3 140 22-177 3-179 (186)
39 2vli_A Antibiotic resistance p 99.3 1.8E-11 6.3E-16 115.5 12.9 126 19-151 4-145 (183)
40 2rhm_A Putative kinase; P-loop 99.3 5.8E-12 2E-16 119.8 9.2 108 18-127 3-127 (193)
41 2c95_A Adenylate kinase 1; tra 99.3 3.5E-11 1.2E-15 114.7 13.8 104 19-127 8-135 (196)
42 3kb2_A SPBC2 prophage-derived 99.3 3.2E-11 1.1E-15 112.3 13.2 141 22-174 3-158 (173)
43 3lw7_A Adenylate kinase relate 99.3 3.1E-11 1.1E-15 111.8 12.8 116 21-146 2-140 (179)
44 2bwj_A Adenylate kinase 5; pho 99.3 2.6E-11 8.9E-16 115.9 11.7 105 18-127 10-138 (199)
45 3dl0_A Adenylate kinase; phosp 99.2 1.8E-11 6.3E-16 119.3 10.6 103 22-126 2-128 (216)
46 2cdn_A Adenylate kinase; phosp 99.2 3.1E-11 1.1E-15 116.5 12.0 111 15-127 15-149 (201)
47 3fb4_A Adenylate kinase; psych 99.2 2.2E-11 7.7E-16 118.5 10.9 103 22-126 2-128 (216)
48 1aky_A Adenylate kinase; ATP:A 99.2 5.6E-11 1.9E-15 116.5 13.3 107 19-127 3-134 (220)
49 3be4_A Adenylate kinase; malar 99.2 7E-11 2.4E-15 115.9 13.3 107 20-128 5-135 (217)
50 1ukz_A Uridylate kinase; trans 99.2 2.1E-10 7.1E-15 110.6 16.0 106 17-127 12-143 (203)
51 3cm0_A Adenylate kinase; ATP-b 99.2 5.2E-11 1.8E-15 112.9 11.5 104 19-126 3-127 (186)
52 2qor_A Guanylate kinase; phosp 99.2 3.1E-11 1.1E-15 117.2 9.5 142 18-175 10-189 (204)
53 2axn_A 6-phosphofructo-2-kinas 99.2 1.5E-10 5.1E-15 128.8 15.0 130 17-146 32-189 (520)
54 2xb4_A Adenylate kinase; ATP-b 99.2 2.2E-10 7.7E-15 113.0 13.7 104 22-127 2-128 (223)
55 3q71_A Poly [ADP-ribose] polym 99.2 1.4E-11 4.8E-16 122.5 4.9 112 194-312 74-185 (221)
56 3tau_A Guanylate kinase, GMP k 99.1 1.9E-11 6.5E-16 119.4 4.0 144 18-177 6-183 (208)
57 1zak_A Adenylate kinase; ATP:A 99.1 6.4E-10 2.2E-14 109.0 12.3 106 18-127 3-131 (222)
58 3gmt_A Adenylate kinase; ssgci 99.1 1.3E-09 4.4E-14 109.1 14.2 102 22-128 10-134 (230)
59 1e4v_A Adenylate kinase; trans 99.1 1.4E-09 4.9E-14 106.0 13.7 102 22-127 2-125 (214)
60 3q6z_A Poly [ADP-ribose] polym 99.0 6.5E-11 2.2E-15 117.3 3.1 111 194-311 71-183 (214)
61 3vaa_A Shikimate kinase, SK; s 99.0 6.4E-10 2.2E-14 107.4 9.8 103 19-129 24-143 (199)
62 4gp7_A Metallophosphoesterase; 99.0 5E-10 1.7E-14 106.1 8.9 145 18-172 7-165 (171)
63 1spv_A Putative polyprotein/ph 99.0 8.2E-11 2.8E-15 114.0 3.2 112 195-313 38-150 (184)
64 2xd7_A Core histone macro-H2A. 99.0 1.5E-10 5E-15 113.0 4.8 110 194-312 56-166 (193)
65 1ak2_A Adenylate kinase isoenz 99.0 2E-09 6.8E-14 106.7 12.6 110 17-128 13-146 (233)
66 3a00_A Guanylate kinase, GMP k 99.0 4.5E-10 1.6E-14 107.5 7.5 140 20-175 1-177 (186)
67 2yvu_A Probable adenylyl-sulfa 99.0 3E-09 1E-13 101.2 13.0 107 18-124 11-132 (186)
68 1zd8_A GTP:AMP phosphotransfer 99.0 3E-09 1E-13 104.7 13.3 105 18-127 5-130 (227)
69 3tr0_A Guanylate kinase, GMP k 99.0 3.4E-09 1.2E-13 101.7 13.3 132 19-165 6-172 (205)
70 1yd9_A Core histone macro-H2A. 99.0 1.6E-10 5.3E-15 112.8 3.4 120 194-322 53-176 (193)
71 3trf_A Shikimate kinase, SK; a 99.0 1.3E-09 4.4E-14 103.2 9.1 146 19-175 4-167 (185)
72 2iyv_A Shikimate kinase, SK; t 98.9 2E-09 6.9E-14 102.0 9.7 119 20-148 2-136 (184)
73 2pbr_A DTMP kinase, thymidylat 98.9 7.9E-09 2.7E-13 97.8 13.5 120 22-150 2-161 (195)
74 4abl_A Poly [ADP-ribose] polym 98.9 3.5E-10 1.2E-14 109.5 4.0 99 194-312 56-154 (183)
75 2x47_A Macro domain-containing 98.9 3.9E-10 1.3E-14 113.2 3.7 110 194-313 96-206 (235)
76 1m7g_A Adenylylsulfate kinase; 98.9 9.5E-09 3.2E-13 100.1 12.6 107 16-122 21-149 (211)
77 2ze6_A Isopentenyl transferase 98.9 3.8E-09 1.3E-13 106.5 10.0 127 21-154 2-166 (253)
78 3uie_A Adenylyl-sulfate kinase 98.9 2E-08 7E-13 96.9 14.3 104 17-122 22-140 (200)
79 3kh6_A Poly [ADP-ribose] polym 98.9 1.1E-09 3.8E-14 107.2 5.0 99 194-312 67-165 (199)
80 2z0h_A DTMP kinase, thymidylat 98.9 7.9E-09 2.7E-13 98.3 10.6 146 22-175 2-184 (197)
81 4eaq_A DTMP kinase, thymidylat 98.9 1.6E-08 5.4E-13 100.7 13.1 158 16-175 22-217 (229)
82 2bdt_A BH3686; alpha-beta prot 98.9 4.2E-08 1.4E-12 93.3 15.5 108 19-128 1-125 (189)
83 1uj2_A Uridine-cytidine kinase 98.9 1.8E-08 6.2E-13 101.0 13.3 121 15-146 17-189 (252)
84 1x6v_B Bifunctional 3'-phospho 98.8 1.8E-08 6.3E-13 114.0 14.2 106 19-124 51-171 (630)
85 2wwf_A Thymidilate kinase, put 98.8 1.2E-08 4.1E-13 98.3 9.5 148 18-174 8-191 (212)
86 1s96_A Guanylate kinase, GMP k 98.8 3.2E-08 1.1E-12 98.0 12.7 144 18-177 14-192 (219)
87 2plr_A DTMP kinase, probable t 98.8 2.4E-08 8.3E-13 95.8 11.5 107 20-126 4-144 (213)
88 1nn5_A Similar to deoxythymidy 98.8 2.5E-08 8.5E-13 96.2 11.5 108 18-125 7-150 (215)
89 3iij_A Coilin-interacting nucl 98.8 3.2E-09 1.1E-13 100.4 5.0 97 19-127 10-119 (180)
90 2pez_A Bifunctional 3'-phospho 98.8 5.1E-08 1.8E-12 92.0 13.2 108 18-125 3-125 (179)
91 1bif_A 6-phosphofructo-2-kinas 98.8 2.6E-08 9.1E-13 109.1 12.8 129 16-144 35-191 (469)
92 2pt5_A Shikimate kinase, SK; a 98.8 1.1E-08 3.8E-13 95.1 8.4 98 22-127 2-115 (168)
93 1kag_A SKI, shikimate kinase I 98.7 9.1E-09 3.1E-13 96.2 6.7 121 19-148 3-140 (173)
94 1e6c_A Shikimate kinase; phosp 98.7 2E-08 6.9E-13 93.7 8.2 96 21-125 3-116 (173)
95 2f6r_A COA synthase, bifunctio 98.7 5.5E-08 1.9E-12 99.6 12.0 113 17-147 72-235 (281)
96 2j41_A Guanylate kinase; GMP, 98.7 8.7E-08 3E-12 91.8 12.2 142 18-175 4-179 (207)
97 1y63_A LMAJ004144AAA protein; 98.7 9.2E-08 3.1E-12 91.2 12.2 100 17-127 7-123 (184)
98 2dx6_A Hypothetical protein TT 98.7 2.6E-09 8.9E-14 100.9 1.4 101 194-307 36-136 (159)
99 3ejf_A Non-structural protein 98.7 6.4E-09 2.2E-13 99.9 3.6 109 194-322 56-164 (176)
100 3lnc_A Guanylate kinase, GMP k 98.7 7.1E-09 2.4E-13 102.3 3.9 135 18-165 25-194 (231)
101 1m8p_A Sulfate adenylyltransfe 98.7 6.3E-08 2.2E-12 108.9 12.0 106 16-122 392-513 (573)
102 3gpg_A NSP3, non-structural pr 98.7 1.1E-09 3.8E-14 104.5 -2.3 81 238-319 70-152 (168)
103 2gks_A Bifunctional SAT/APS ki 98.7 4.4E-08 1.5E-12 109.6 9.8 104 18-123 370-488 (546)
104 2if2_A Dephospho-COA kinase; a 98.7 3.4E-08 1.2E-12 95.0 7.8 32 22-56 3-34 (204)
105 1nks_A Adenylate kinase; therm 98.6 1.1E-07 3.8E-12 89.7 10.7 103 21-127 2-141 (194)
106 1vhu_A Hypothetical protein AF 98.6 5.1E-09 1.8E-13 103.5 1.0 88 230-321 91-185 (211)
107 1kgd_A CASK, peripheral plasma 98.6 1.8E-08 6.2E-13 95.8 4.6 132 19-175 4-171 (180)
108 1zp6_A Hypothetical protein AT 98.6 1.7E-07 5.9E-12 88.8 11.0 125 17-150 6-146 (191)
109 1jjv_A Dephospho-COA kinase; P 98.6 3.5E-08 1.2E-12 95.2 6.2 110 20-147 2-159 (206)
110 1lvg_A Guanylate kinase, GMP k 98.6 2.3E-07 7.7E-12 89.9 11.8 134 19-165 3-173 (198)
111 2acf_A Replicase polyprotein 1 98.6 1.6E-08 5.4E-13 97.8 3.4 85 231-330 89-173 (182)
112 3gqe_A Non-structural protein 98.6 5.3E-09 1.8E-13 99.8 -0.4 86 238-323 64-150 (168)
113 1uf9_A TT1252 protein; P-loop, 98.6 3.2E-08 1.1E-12 94.6 5.1 37 17-56 5-41 (203)
114 3eti_A X (ADRP) domain, macro 98.6 1.3E-08 4.4E-13 97.1 2.3 109 194-322 48-157 (168)
115 1kht_A Adenylate kinase; phosp 98.6 2.4E-07 8.3E-12 87.3 10.9 105 20-127 3-140 (192)
116 1via_A Shikimate kinase; struc 98.6 3.4E-08 1.2E-12 93.0 4.8 96 22-126 6-114 (175)
117 1njr_A 32.1 kDa protein in ADH 98.6 1.7E-08 5.8E-13 103.8 2.7 77 235-312 137-221 (284)
118 3ney_A 55 kDa erythrocyte memb 98.6 9.8E-08 3.3E-12 93.3 7.8 93 17-115 16-142 (197)
119 2qt1_A Nicotinamide riboside k 98.6 2.3E-07 7.8E-12 89.6 10.3 104 15-127 16-152 (207)
120 2v54_A DTMP kinase, thymidylat 98.6 4.7E-07 1.6E-11 86.6 12.4 102 19-120 3-137 (204)
121 2jaq_A Deoxyguanosine kinase; 98.5 2.7E-07 9.2E-12 87.9 10.1 103 22-127 2-147 (205)
122 4edh_A DTMP kinase, thymidylat 98.5 4.9E-07 1.7E-11 89.1 12.2 153 19-174 5-198 (213)
123 2bbw_A Adenylate kinase 4, AK4 98.5 8.1E-07 2.8E-11 88.4 12.4 104 19-127 26-150 (246)
124 1zuh_A Shikimate kinase; alpha 98.5 1.8E-07 6E-12 87.3 6.9 95 21-125 8-117 (168)
125 1vht_A Dephospho-COA kinase; s 98.5 4E-07 1.4E-11 88.6 9.6 35 19-56 3-37 (218)
126 4i1u_A Dephospho-COA kinase; s 98.5 8.5E-07 2.9E-11 87.5 11.9 110 21-148 10-168 (210)
127 3v9p_A DTMP kinase, thymidylat 98.5 3E-07 1E-11 91.7 8.6 152 19-174 24-218 (227)
128 3ake_A Cytidylate kinase; CMP 98.5 1.3E-06 4.6E-11 83.5 12.8 34 22-57 4-37 (208)
129 4hlc_A DTMP kinase, thymidylat 98.5 1.2E-06 4.2E-11 85.7 12.7 109 19-127 1-147 (205)
130 4tmk_A Protein (thymidylate ki 98.4 1.9E-06 6.4E-11 85.0 13.0 152 20-175 3-199 (213)
131 3lv8_A DTMP kinase, thymidylat 98.4 1.2E-06 4.1E-11 87.8 10.8 153 19-175 26-221 (236)
132 4e22_A Cytidylate kinase; P-lo 98.4 4.5E-06 1.5E-10 83.8 14.7 37 19-57 26-62 (252)
133 1cke_A CK, MSSA, protein (cyti 98.4 2E-06 6.7E-11 83.7 11.6 35 20-56 5-39 (227)
134 3nwj_A ATSK2; P loop, shikimat 98.4 8.1E-07 2.8E-11 89.8 9.1 97 20-125 48-162 (250)
135 3cr8_A Sulfate adenylyltranfer 98.3 1E-06 3.6E-11 98.6 10.4 105 18-123 367-487 (552)
136 4gua_A Non-structural polyprot 98.3 5.9E-08 2E-12 105.9 -0.1 82 239-321 405-488 (670)
137 1rz3_A Hypothetical protein rb 98.3 6.4E-07 2.2E-11 86.6 6.4 102 17-126 19-165 (201)
138 3fdi_A Uncharacterized protein 98.3 1.4E-06 4.9E-11 84.8 8.8 98 20-127 6-139 (201)
139 2h92_A Cytidylate kinase; ross 98.3 7.4E-06 2.5E-10 79.4 13.9 35 20-56 3-37 (219)
140 3a8t_A Adenylate isopentenyltr 98.3 4.7E-06 1.6E-10 87.7 13.3 106 18-127 38-196 (339)
141 2grj_A Dephospho-COA kinase; T 98.3 6.6E-07 2.3E-11 86.8 5.3 37 18-56 10-46 (192)
142 3hjn_A DTMP kinase, thymidylat 98.3 7.5E-06 2.6E-10 79.5 12.8 145 22-174 2-183 (197)
143 3ejg_A Non-structural protein 98.2 2.4E-07 8.1E-12 90.1 1.9 104 194-322 76-182 (193)
144 1q3t_A Cytidylate kinase; nucl 98.2 2.1E-05 7.1E-10 77.7 15.5 38 17-56 13-50 (236)
145 1gtv_A TMK, thymidylate kinase 98.2 6E-08 2E-12 93.6 -3.5 155 22-176 2-207 (214)
146 3ld9_A DTMP kinase, thymidylat 98.2 2.5E-06 8.7E-11 84.8 7.5 110 16-127 17-167 (223)
147 3r20_A Cytidylate kinase; stru 98.1 1.3E-05 4.5E-10 80.1 12.2 37 18-56 7-43 (233)
148 1p5z_B DCK, deoxycytidine kina 98.1 1.5E-06 5.3E-11 87.3 4.6 43 3-45 6-49 (263)
149 3tvt_A Disks large 1 tumor sup 98.1 3.7E-06 1.3E-10 86.9 6.9 139 17-176 97-270 (292)
150 3c8u_A Fructokinase; YP_612366 98.1 9.8E-06 3.4E-10 78.5 9.6 121 17-146 19-185 (208)
151 3hdt_A Putative kinase; struct 98.1 1E-05 3.5E-10 80.3 9.7 100 20-127 14-159 (223)
152 1z6g_A Guanylate kinase; struc 98.0 2.1E-05 7.2E-10 77.1 11.0 139 18-168 21-196 (218)
153 3tmk_A Thymidylate kinase; pho 98.0 5.5E-06 1.9E-10 81.9 6.5 107 19-125 4-147 (216)
154 3kfv_A Tight junction protein 98.0 1.4E-05 4.9E-10 83.0 9.8 127 17-165 142-275 (308)
155 3crm_A TRNA delta(2)-isopenten 97.9 3.4E-05 1.2E-09 80.7 11.0 37 18-56 3-39 (323)
156 1kjw_A Postsynaptic density pr 97.9 9.4E-06 3.2E-10 83.9 6.6 137 17-176 102-275 (295)
157 3tqc_A Pantothenate kinase; bi 97.9 2.6E-05 8.9E-10 81.6 9.4 108 17-127 89-249 (321)
158 3tsz_A Tight junction protein 97.9 2.7E-05 9.2E-10 83.6 8.8 133 17-167 229-367 (391)
159 1a7j_A Phosphoribulokinase; tr 97.8 9.7E-06 3.3E-10 83.4 4.7 40 19-58 4-46 (290)
160 2vri_A Non-structural protein 97.8 1.9E-06 6.4E-11 82.6 -0.7 69 240-321 92-160 (174)
161 3asz_A Uridine kinase; cytidin 97.8 0.00018 6E-09 69.2 12.9 41 17-57 3-43 (211)
162 1sq5_A Pantothenate kinase; P- 97.8 0.00011 3.8E-09 75.9 11.1 40 17-56 77-121 (308)
163 3shw_A Tight junction protein 97.7 3.9E-05 1.3E-09 84.1 7.7 132 17-166 221-358 (468)
164 3foz_A TRNA delta(2)-isopenten 97.7 0.00051 1.7E-08 71.5 15.4 39 16-56 6-44 (316)
165 3exa_A TRNA delta(2)-isopenten 97.7 0.00058 2E-08 71.2 14.8 36 19-56 2-37 (322)
166 2eee_A Uncharacterized protein 97.7 1.9E-05 6.5E-10 73.6 3.2 66 238-305 72-138 (149)
167 1znw_A Guanylate kinase, GMP k 97.6 0.00016 5.4E-09 69.9 9.7 30 16-45 16-45 (207)
168 2jyc_A Uncharacterized protein 97.6 2.1E-05 7.1E-10 74.3 3.2 66 239-306 84-150 (160)
169 2jeo_A Uridine-cytidine kinase 97.6 0.00051 1.7E-08 68.1 12.6 28 18-45 23-50 (245)
170 2ocp_A DGK, deoxyguanosine kin 97.6 7.3E-05 2.5E-09 73.9 6.0 27 19-45 1-27 (241)
171 3t15_A Ribulose bisphosphate c 97.6 0.00014 4.7E-09 74.6 8.2 49 17-65 33-81 (293)
172 3d3q_A TRNA delta(2)-isopenten 97.5 0.00028 9.5E-09 74.3 10.6 36 19-56 6-41 (340)
173 2vp4_A Deoxynucleoside kinase; 97.5 0.00011 3.8E-09 72.3 6.9 27 17-43 17-43 (230)
174 4dey_A Voltage-dependent L-typ 97.5 0.00028 9.7E-09 73.9 9.8 129 23-165 145-306 (337)
175 2xkx_A Disks large homolog 4; 97.5 0.00038 1.3E-08 80.3 11.8 137 17-176 528-701 (721)
176 4b4t_L 26S protease subunit RP 97.5 0.00017 5.7E-09 78.5 8.3 59 17-75 212-270 (437)
177 4b4t_J 26S protease regulatory 97.5 0.00015 5.1E-09 78.0 7.7 60 17-76 179-238 (405)
178 4b4t_K 26S protease regulatory 97.5 0.00018 6.3E-09 78.0 8.4 56 17-72 203-258 (428)
179 4b4t_M 26S protease regulatory 97.5 0.00015 5.2E-09 78.7 7.7 56 17-72 212-267 (434)
180 4b4t_I 26S protease regulatory 97.4 0.00025 8.6E-09 76.8 8.3 61 17-77 213-273 (437)
181 4b4t_H 26S protease regulatory 97.4 0.00022 7.7E-09 77.8 7.8 59 17-75 240-298 (467)
182 3h4m_A Proteasome-activating n 97.4 0.00035 1.2E-08 70.2 8.6 69 18-86 49-119 (285)
183 2qz4_A Paraplegin; AAA+, SPG7, 97.2 0.00077 2.6E-08 66.5 8.6 69 18-86 37-107 (262)
184 3b9p_A CG5977-PA, isoform A; A 97.2 0.00068 2.3E-08 68.6 8.3 68 19-86 53-122 (297)
185 3eie_A Vacuolar protein sortin 97.2 0.00057 2E-08 70.6 7.5 68 19-86 50-119 (322)
186 1lv7_A FTSH; alpha/beta domain 97.2 0.00085 2.9E-08 66.5 8.5 42 20-61 45-86 (257)
187 1xwi_A SKD1 protein; VPS4B, AA 97.2 0.00061 2.1E-08 70.7 7.5 68 18-85 43-113 (322)
188 3syl_A Protein CBBX; photosynt 97.1 0.0024 8.4E-08 64.6 11.8 94 18-112 65-176 (309)
189 3aez_A Pantothenate kinase; tr 97.1 0.00096 3.3E-08 69.3 8.3 40 17-56 87-131 (312)
190 2qp9_X Vacuolar protein sortin 97.0 0.00083 2.8E-08 70.7 6.5 67 20-86 84-152 (355)
191 3d8b_A Fidgetin-like protein 1 96.9 0.0015 5.2E-08 68.6 8.4 68 18-85 115-184 (357)
192 3ec2_A DNA replication protein 96.9 0.00034 1.2E-08 65.6 3.0 81 19-99 37-125 (180)
193 1p6x_A Thymidine kinase; P-loo 96.9 0.0019 6.4E-08 67.9 8.5 28 19-46 6-33 (334)
194 1jbk_A CLPB protein; beta barr 96.9 0.0014 4.9E-08 60.2 6.7 27 18-44 41-67 (195)
195 1d2n_A N-ethylmaleimide-sensit 96.9 0.006 2E-07 61.0 11.7 36 17-52 61-96 (272)
196 2x8a_A Nuclear valosin-contain 96.8 0.0017 5.7E-08 65.9 7.4 40 23-62 47-86 (274)
197 3ch4_B Pmkase, phosphomevalona 96.8 0.021 7E-07 55.8 14.7 133 17-165 8-174 (202)
198 3eph_A TRNA isopentenyltransfe 96.8 0.0026 8.9E-08 68.4 9.0 34 20-55 2-35 (409)
199 3cf2_A TER ATPase, transitiona 96.8 0.0015 5E-08 76.1 7.1 68 18-85 236-305 (806)
200 3cf0_A Transitional endoplasmi 96.8 0.00071 2.4E-08 69.3 4.0 37 18-54 47-83 (301)
201 1g8f_A Sulfate adenylyltransfe 96.7 0.0021 7.2E-08 71.2 7.6 63 18-88 393-460 (511)
202 2p65_A Hypothetical protein PF 96.7 0.0014 4.8E-08 60.3 5.0 27 18-44 41-67 (187)
203 2ce7_A Cell division protein F 96.6 0.0038 1.3E-07 68.5 8.7 43 20-62 49-91 (476)
204 2kjq_A DNAA-related protein; s 96.6 0.0016 5.3E-08 60.1 4.8 56 19-87 35-93 (149)
205 1ixz_A ATP-dependent metallopr 96.6 0.0037 1.3E-07 61.7 7.6 35 23-57 52-86 (254)
206 3u61_B DNA polymerase accessor 96.6 0.0015 5.2E-08 66.9 4.8 91 16-112 44-143 (324)
207 2fg1_A Conserved hypothetical 96.6 0.00039 1.4E-08 65.2 0.2 36 268-304 111-146 (158)
208 3vfd_A Spastin; ATPase, microt 96.6 0.0027 9.4E-08 67.2 6.8 68 19-86 147-216 (389)
209 3hu3_A Transitional endoplasmi 96.5 0.0039 1.3E-07 68.7 7.8 68 18-85 236-305 (489)
210 3dm5_A SRP54, signal recogniti 96.5 0.012 4.2E-07 63.9 11.6 40 18-57 98-140 (443)
211 3czq_A Putative polyphosphate 96.5 0.004 1.4E-07 64.4 7.3 104 18-128 84-214 (304)
212 2chg_A Replication factor C sm 96.5 0.0026 8.7E-08 59.9 5.4 98 23-125 41-152 (226)
213 2c9o_A RUVB-like 1; hexameric 96.5 0.0028 9.4E-08 68.9 6.2 48 19-66 62-111 (456)
214 2zan_A Vacuolar protein sortin 96.5 0.0019 6.4E-08 70.1 4.8 42 18-59 165-207 (444)
215 1odf_A YGR205W, hypothetical 3 96.4 0.0021 7.2E-08 66.0 4.7 41 16-56 27-73 (290)
216 3bos_A Putative DNA replicatio 96.4 0.0025 8.5E-08 61.3 5.0 38 19-56 51-91 (242)
217 1iy2_A ATP-dependent metallopr 96.4 0.0066 2.2E-07 61.0 7.9 35 23-57 76-110 (278)
218 3pfi_A Holliday junction ATP-d 96.3 0.0044 1.5E-07 63.7 6.5 75 19-99 54-129 (338)
219 2vhj_A Ntpase P4, P4; non- hyd 96.3 0.0037 1.3E-07 65.4 5.9 68 20-87 123-192 (331)
220 3cf2_A TER ATPase, transitiona 96.3 0.0032 1.1E-07 73.3 6.0 61 18-78 509-569 (806)
221 1of1_A Thymidine kinase; trans 96.3 0.034 1.2E-06 59.2 13.3 29 17-45 46-74 (376)
222 1l8q_A Chromosomal replication 96.3 0.003 1E-07 64.8 4.9 68 19-86 36-107 (324)
223 3n70_A Transport activator; si 96.2 0.023 8E-07 51.4 10.1 89 22-118 26-120 (145)
224 3kl4_A SRP54, signal recogniti 96.2 0.014 4.6E-07 63.4 9.9 39 18-56 95-136 (433)
225 1um8_A ATP-dependent CLP prote 96.2 0.0069 2.4E-07 63.6 7.1 37 20-56 72-108 (376)
226 2qby_B CDC6 homolog 3, cell di 96.2 0.0096 3.3E-07 61.8 8.1 28 17-44 42-69 (384)
227 1sxj_E Activator 1 40 kDa subu 96.1 0.0058 2E-07 63.0 6.2 27 17-44 34-60 (354)
228 1hqc_A RUVB; extended AAA-ATPa 96.1 0.0044 1.5E-07 63.1 5.2 76 19-99 37-113 (324)
229 1njg_A DNA polymerase III subu 96.1 0.0059 2E-07 57.9 5.8 28 18-45 43-70 (250)
230 1ofh_A ATP-dependent HSL prote 96.1 0.0046 1.6E-07 62.2 5.0 40 19-58 49-88 (310)
231 2w58_A DNAI, primosome compone 96.0 0.0033 1.1E-07 59.7 3.6 121 21-148 55-191 (202)
232 1g41_A Heat shock protein HSLU 96.0 0.0079 2.7E-07 65.5 6.9 44 19-62 49-93 (444)
233 3hws_A ATP-dependent CLP prote 96.0 0.0048 1.6E-07 64.6 4.8 38 19-56 50-87 (363)
234 2v1u_A Cell division control p 96.0 0.01 3.5E-07 61.2 7.2 28 17-44 41-68 (387)
235 1e2k_A Thymidine kinase; trans 95.9 0.059 2E-06 56.4 12.7 27 19-45 3-29 (331)
236 3uk6_A RUVB-like 2; hexameric 95.9 0.046 1.6E-06 56.5 12.0 33 20-52 70-104 (368)
237 2r62_A Cell division protease 95.9 0.00091 3.1E-08 66.5 -1.1 36 21-56 45-80 (268)
238 1c9k_A COBU, adenosylcobinamid 95.9 0.0054 1.8E-07 58.8 4.4 33 22-55 1-33 (180)
239 1ypw_A Transitional endoplasmi 95.9 0.0077 2.6E-07 70.2 6.3 69 18-86 236-306 (806)
240 2qby_A CDC6 homolog 1, cell di 95.8 0.017 5.9E-07 59.4 8.2 36 17-52 42-83 (386)
241 1sxj_C Activator 1 40 kDa subu 95.8 0.0063 2.2E-07 63.0 4.9 103 18-126 45-161 (340)
242 2chq_A Replication factor C sm 95.8 0.013 4.6E-07 58.9 7.2 103 18-126 37-153 (319)
243 2px0_A Flagellar biosynthesis 95.8 0.029 9.8E-07 57.6 9.7 39 18-56 103-145 (296)
244 1fnn_A CDC6P, cell division co 95.8 0.027 9.2E-07 58.3 9.6 24 22-45 46-69 (389)
245 2j37_W Signal recognition part 95.8 0.039 1.3E-06 61.0 11.3 40 18-57 99-141 (504)
246 2z4s_A Chromosomal replication 95.8 0.0052 1.8E-07 66.6 4.1 67 20-86 130-203 (440)
247 2dhr_A FTSH; AAA+ protein, hex 95.8 0.011 3.7E-07 65.4 6.5 39 22-60 66-104 (499)
248 3pvs_A Replication-associated 95.7 0.0043 1.5E-07 67.5 3.2 76 21-99 51-129 (447)
249 2cvh_A DNA repair and recombin 95.7 0.0077 2.6E-07 57.4 4.5 36 18-53 18-53 (220)
250 1in4_A RUVB, holliday junction 95.6 0.008 2.7E-07 62.4 4.7 34 19-52 50-83 (334)
251 2yhs_A FTSY, cell division pro 95.6 0.026 9E-07 62.2 8.8 28 17-44 290-317 (503)
252 3co5_A Putative two-component 95.6 0.0055 1.9E-07 55.5 2.9 69 22-99 29-98 (143)
253 1sxj_B Activator 1 37 kDa subu 95.6 0.0068 2.3E-07 61.2 3.8 103 18-126 41-158 (323)
254 1vma_A Cell division protein F 95.5 0.013 4.3E-07 60.7 5.8 41 17-57 101-144 (306)
255 1jr3_A DNA polymerase III subu 95.5 0.025 8.6E-07 58.4 8.0 29 17-45 35-63 (373)
256 2v3c_C SRP54, signal recogniti 95.5 0.018 6.1E-07 62.4 6.9 40 18-57 97-139 (432)
257 2qmh_A HPR kinase/phosphorylas 95.5 0.0084 2.9E-07 58.6 3.9 35 19-56 33-67 (205)
258 1iqp_A RFCS; clamp loader, ext 95.5 0.0068 2.3E-07 61.3 3.4 99 23-126 49-161 (327)
259 4a74_A DNA repair and recombin 95.5 0.0071 2.4E-07 58.0 3.3 26 18-43 23-48 (231)
260 2xxa_A Signal recognition part 95.5 0.11 3.8E-06 56.2 13.1 40 18-57 98-141 (433)
261 2ehv_A Hypothetical protein PH 95.5 0.0063 2.2E-07 59.2 2.9 24 18-41 28-51 (251)
262 1ye8_A Protein THEP1, hypothet 95.4 0.0085 2.9E-07 56.8 3.5 24 22-45 2-25 (178)
263 3rhf_A Putative polyphosphate 95.3 0.0091 3.1E-07 61.2 3.7 107 18-129 73-204 (289)
264 1a5t_A Delta prime, HOLB; zinc 95.2 0.061 2.1E-06 55.7 9.8 111 16-127 20-160 (334)
265 4a1f_A DNAB helicase, replicat 95.2 0.057 2E-06 56.6 9.6 37 17-53 43-82 (338)
266 2gza_A Type IV secretion syste 95.2 0.073 2.5E-06 56.0 10.3 127 19-147 174-320 (361)
267 1sxj_D Activator 1 41 kDa subu 95.2 0.037 1.3E-06 56.7 7.8 22 23-44 61-82 (353)
268 1xjc_A MOBB protein homolog; s 95.1 0.011 3.7E-07 56.1 3.4 25 20-44 4-28 (169)
269 2w0m_A SSO2452; RECA, SSPF, un 95.1 0.0099 3.4E-07 56.8 3.2 26 18-43 21-46 (235)
270 3e70_C DPA, signal recognition 95.1 0.013 4.5E-07 61.2 4.3 40 17-56 126-168 (328)
271 2r44_A Uncharacterized protein 95.1 0.013 4.3E-07 60.3 4.0 31 22-52 48-78 (331)
272 4fcw_A Chaperone protein CLPB; 95.1 0.016 5.5E-07 58.4 4.8 35 21-55 48-85 (311)
273 1np6_A Molybdopterin-guanine d 95.0 0.013 4.3E-07 55.7 3.5 26 19-44 5-30 (174)
274 1htw_A HI0065; nucleotide-bind 95.0 0.016 5.6E-07 53.9 4.2 27 18-44 31-57 (158)
275 3hr8_A Protein RECA; alpha and 95.0 0.059 2E-06 56.9 8.9 36 18-53 59-97 (356)
276 1rj9_A FTSY, signal recognitio 95.0 0.013 4.5E-07 60.4 3.8 27 18-44 100-126 (304)
277 1j8m_F SRP54, signal recogniti 95.0 0.047 1.6E-06 56.1 7.9 38 19-56 97-137 (297)
278 1osn_A Thymidine kinase, VZV-T 95.0 0.047 1.6E-06 57.4 8.0 28 18-45 10-38 (341)
279 1sxj_A Activator 1 95 kDa subu 94.9 0.016 5.5E-07 63.8 4.5 35 19-53 76-110 (516)
280 3czp_A Putative polyphosphate 94.9 0.013 4.5E-07 64.6 3.8 108 17-129 40-172 (500)
281 3b9q_A Chloroplast SRP recepto 94.9 0.015 5.3E-07 59.8 4.0 28 17-44 97-124 (302)
282 2eyu_A Twitching motility prot 94.8 0.017 5.9E-07 58.1 4.1 27 18-44 23-49 (261)
283 3m6a_A ATP-dependent protease 94.8 0.017 5.8E-07 64.3 4.3 36 19-54 107-142 (543)
284 1tue_A Replication protein E1; 94.8 0.012 4.1E-07 57.8 2.7 27 19-45 57-83 (212)
285 1n0w_A DNA repair protein RAD5 94.8 0.012 4.2E-07 56.9 2.8 26 18-43 22-47 (243)
286 3sig_A PArg, poly(ADP-ribose) 94.8 0.011 3.7E-07 60.4 2.4 42 265-306 201-242 (277)
287 1svm_A Large T antigen; AAA+ f 94.7 0.017 5.7E-07 61.6 3.8 30 17-46 166-195 (377)
288 2dr3_A UPF0273 protein PH0284; 94.7 0.016 5.4E-07 56.2 3.2 26 18-43 21-46 (247)
289 1cr0_A DNA primase/helicase; R 94.7 0.016 5.6E-07 58.5 3.5 27 17-43 32-58 (296)
290 2gno_A DNA polymerase III, gam 94.6 0.09 3.1E-06 54.1 9.0 101 20-125 18-132 (305)
291 3tif_A Uncharacterized ABC tra 94.5 0.016 5.5E-07 57.4 3.0 27 18-44 29-55 (235)
292 2og2_A Putative signal recogni 94.5 0.022 7.4E-07 60.3 4.0 28 17-44 154-181 (359)
293 2v9p_A Replication protein E1; 94.5 0.019 6.4E-07 59.5 3.5 28 17-44 123-150 (305)
294 2f1r_A Molybdopterin-guanine d 94.4 0.013 4.3E-07 55.5 1.8 25 21-45 3-27 (171)
295 2bjv_A PSP operon transcriptio 94.4 0.028 9.6E-07 55.7 4.5 34 20-53 29-65 (265)
296 1ypw_A Transitional endoplasmi 94.4 0.0082 2.8E-07 70.0 0.6 45 19-63 510-554 (806)
297 2r6a_A DNAB helicase, replicat 94.4 0.25 8.6E-06 53.3 12.3 37 17-53 200-240 (454)
298 3p32_A Probable GTPase RV1496/ 94.3 0.042 1.4E-06 57.6 5.8 38 17-54 76-116 (355)
299 1qvr_A CLPB protein; coiled co 94.3 0.049 1.7E-06 63.7 6.8 24 21-44 192-215 (854)
300 2r2a_A Uncharacterized protein 94.3 0.025 8.7E-07 54.7 3.7 26 18-43 3-28 (199)
301 2orw_A Thymidine kinase; TMTK, 94.3 0.025 8.4E-07 53.9 3.5 25 20-44 3-27 (184)
302 3te6_A Regulatory protein SIR3 94.3 0.021 7.3E-07 59.4 3.3 28 17-44 42-69 (318)
303 1oix_A RAS-related protein RAB 94.3 0.027 9.4E-07 52.9 3.8 26 19-44 28-53 (191)
304 3iev_A GTP-binding protein ERA 94.2 0.15 5.2E-06 52.2 9.6 28 16-43 6-33 (308)
305 2q6t_A DNAB replication FORK h 94.2 0.18 6.2E-06 54.3 10.5 36 18-53 198-237 (444)
306 3pxg_A Negative regulator of g 94.2 0.028 9.7E-07 61.2 4.2 23 22-44 203-225 (468)
307 1xp8_A RECA protein, recombina 94.2 0.063 2.2E-06 56.8 6.8 36 19-54 73-111 (366)
308 2pcj_A ABC transporter, lipopr 94.2 0.018 6.2E-07 56.5 2.4 27 18-44 28-54 (224)
309 2cbz_A Multidrug resistance-as 94.2 0.022 7.4E-07 56.5 3.0 26 18-43 29-54 (237)
310 3jvv_A Twitching mobility prot 94.1 0.14 4.8E-06 53.9 9.3 104 19-123 122-241 (356)
311 2ga8_A Hypothetical 39.9 kDa p 94.1 0.027 9.1E-07 59.6 3.7 28 19-46 23-50 (359)
312 1nlf_A Regulatory protein REPA 94.1 0.022 7.4E-07 57.3 2.8 26 18-43 28-53 (279)
313 1u94_A RECA protein, recombina 94.1 0.094 3.2E-06 55.3 7.8 36 19-54 62-100 (356)
314 1mv5_A LMRA, multidrug resista 94.1 0.026 8.9E-07 56.1 3.3 27 18-44 26-52 (243)
315 1yrb_A ATP(GTP)binding protein 94.0 0.053 1.8E-06 53.3 5.3 39 16-54 10-50 (262)
316 2fna_A Conserved hypothetical 94.0 0.12 4.2E-06 52.3 8.3 35 21-55 31-65 (357)
317 2onk_A Molybdate/tungstate ABC 93.9 0.029 9.8E-07 55.9 3.3 25 21-45 25-49 (240)
318 2i3b_A HCR-ntpase, human cance 93.9 0.026 9E-07 54.1 2.9 23 22-44 3-25 (189)
319 3pxi_A Negative regulator of g 93.9 0.075 2.6E-06 61.2 7.2 38 22-59 523-563 (758)
320 1zu4_A FTSY; GTPase, signal re 93.9 0.044 1.5E-06 56.9 4.8 40 17-56 102-144 (320)
321 1b0u_A Histidine permease; ABC 93.9 0.026 8.8E-07 56.9 2.9 28 18-45 30-57 (262)
322 3tqf_A HPR(Ser) kinase; transf 93.9 0.037 1.3E-06 53.0 3.7 34 20-56 16-49 (181)
323 4g1u_C Hemin import ATP-bindin 93.8 0.024 8.3E-07 57.3 2.4 27 18-44 35-61 (266)
324 2zts_A Putative uncharacterize 93.7 0.033 1.1E-06 53.9 3.3 36 18-53 28-67 (251)
325 2ewv_A Twitching motility prot 93.7 0.037 1.3E-06 58.6 4.0 27 18-44 134-160 (372)
326 3gfo_A Cobalt import ATP-bindi 93.7 0.024 8.1E-07 57.7 2.3 27 18-44 32-58 (275)
327 2zu0_C Probable ATP-dependent 93.7 0.034 1.2E-06 56.1 3.5 26 18-43 44-69 (267)
328 2qm8_A GTPase/ATPase; G protei 93.7 0.061 2.1E-06 56.1 5.5 27 17-43 52-78 (337)
329 2olj_A Amino acid ABC transpor 93.7 0.029 1E-06 56.6 2.9 27 18-44 48-74 (263)
330 2ff7_A Alpha-hemolysin translo 93.7 0.025 8.7E-07 56.4 2.4 28 18-45 33-60 (247)
331 2ixe_A Antigen peptide transpo 93.7 0.03 1E-06 56.7 3.0 28 18-45 43-70 (271)
332 2d2e_A SUFC protein; ABC-ATPas 93.7 0.03 1E-06 55.9 3.0 26 18-43 27-52 (250)
333 2ghi_A Transport protein; mult 93.6 0.031 1E-06 56.2 3.0 27 18-44 44-70 (260)
334 1ji0_A ABC transporter; ATP bi 93.6 0.027 9.1E-07 55.9 2.4 28 18-45 30-57 (240)
335 1dek_A Deoxynucleoside monopho 93.6 0.054 1.9E-06 54.1 4.6 30 21-52 2-31 (241)
336 1g6h_A High-affinity branched- 93.6 0.027 9.4E-07 56.4 2.4 28 18-45 31-58 (257)
337 1vpl_A ABC transporter, ATP-bi 93.6 0.032 1.1E-06 56.1 2.9 28 18-45 39-66 (256)
338 2pze_A Cystic fibrosis transme 93.5 0.028 9.6E-07 55.4 2.4 27 19-45 33-59 (229)
339 1ky3_A GTP-binding protein YPT 93.5 0.048 1.6E-06 49.6 3.8 26 18-43 6-31 (182)
340 2yz2_A Putative ABC transporte 93.5 0.034 1.2E-06 56.0 3.0 27 18-44 31-57 (266)
341 2wji_A Ferrous iron transport 93.4 0.048 1.6E-06 49.7 3.6 22 21-42 4-25 (165)
342 1z2a_A RAS-related protein RAB 93.4 0.052 1.8E-06 48.6 3.8 25 19-43 4-28 (168)
343 1sgw_A Putative ABC transporte 93.4 0.025 8.7E-07 55.3 1.8 27 19-45 34-60 (214)
344 1v5w_A DMC1, meiotic recombina 93.4 0.068 2.3E-06 55.8 5.2 26 18-43 120-145 (343)
345 3b85_A Phosphate starvation-in 93.4 0.026 8.9E-07 54.9 1.9 25 19-43 21-45 (208)
346 2fn4_A P23, RAS-related protei 93.4 0.057 2E-06 49.0 4.1 26 18-43 7-32 (181)
347 3czp_A Putative polyphosphate 93.4 0.059 2E-06 59.4 4.9 107 18-129 298-429 (500)
348 2wsm_A Hydrogenase expression/ 93.4 0.052 1.8E-06 51.8 4.0 27 19-45 29-55 (221)
349 3pxi_A Negative regulator of g 93.4 0.045 1.5E-06 63.1 4.2 23 22-44 203-225 (758)
350 3bgw_A DNAB-like replicative h 93.4 0.17 5.8E-06 54.8 8.5 36 18-53 195-233 (444)
351 3kta_A Chromosome segregation 93.4 0.04 1.4E-06 51.2 3.1 26 20-45 26-51 (182)
352 1r6b_X CLPA protein; AAA+, N-t 93.3 0.11 3.8E-06 59.6 7.3 26 19-44 206-231 (758)
353 2dyk_A GTP-binding protein; GT 93.3 0.046 1.6E-06 48.7 3.2 21 23-43 4-24 (161)
354 2f9l_A RAB11B, member RAS onco 93.3 0.044 1.5E-06 51.5 3.2 23 21-43 6-28 (199)
355 1pui_A ENGB, probable GTP-bind 93.2 0.031 1.1E-06 52.7 2.0 25 18-42 24-48 (210)
356 2qi9_C Vitamin B12 import ATP- 93.2 0.034 1.2E-06 55.6 2.4 27 18-44 24-50 (249)
357 1g8p_A Magnesium-chelatase 38 93.2 0.028 9.7E-07 57.5 1.8 23 23-45 48-70 (350)
358 2z43_A DNA repair and recombin 93.1 0.057 1.9E-06 55.8 4.1 27 18-44 105-131 (324)
359 2ce2_X GTPase HRAS; signaling 93.1 0.061 2.1E-06 47.7 3.8 23 21-43 4-26 (166)
360 1pzn_A RAD51, DNA repair and r 93.1 0.045 1.5E-06 57.4 3.3 27 18-44 129-155 (349)
361 2hf9_A Probable hydrogenase ni 93.1 0.063 2.2E-06 51.4 4.1 26 19-44 37-62 (226)
362 1kao_A RAP2A; GTP-binding prot 93.1 0.062 2.1E-06 47.9 3.8 23 21-43 4-26 (167)
363 1nrj_B SR-beta, signal recogni 93.1 0.055 1.9E-06 51.4 3.7 28 17-44 9-36 (218)
364 2ihy_A ABC transporter, ATP-bi 93.1 0.036 1.2E-06 56.5 2.4 28 18-45 45-72 (279)
365 3fvq_A Fe(3+) IONS import ATP- 93.1 0.048 1.6E-06 57.7 3.5 27 18-44 28-54 (359)
366 2nq2_C Hypothetical ABC transp 93.1 0.036 1.2E-06 55.5 2.4 27 18-44 29-55 (253)
367 2www_A Methylmalonic aciduria 93.0 0.058 2E-06 56.5 4.0 26 18-43 72-97 (349)
368 2wjg_A FEOB, ferrous iron tran 93.0 0.068 2.3E-06 49.2 4.0 25 19-43 6-30 (188)
369 3sop_A Neuronal-specific septi 93.0 0.048 1.6E-06 55.2 3.2 24 21-44 3-26 (270)
370 2lkc_A Translation initiation 93.0 0.064 2.2E-06 48.7 3.7 26 18-43 6-31 (178)
371 3bc1_A RAS-related protein RAB 92.9 0.067 2.3E-06 49.0 3.9 26 18-43 9-34 (195)
372 1ek0_A Protein (GTP-binding pr 92.9 0.056 1.9E-06 48.4 3.2 23 21-43 4-26 (170)
373 1lw7_A Transcriptional regulat 92.9 0.058 2E-06 56.5 3.9 26 20-45 170-195 (365)
374 1p9r_A General secretion pathw 92.9 0.063 2.1E-06 57.9 4.2 68 18-85 165-243 (418)
375 1g16_A RAS-related protein SEC 92.9 0.056 1.9E-06 48.5 3.2 23 21-43 4-26 (170)
376 3clv_A RAB5 protein, putative; 92.9 0.078 2.7E-06 48.8 4.3 26 18-43 5-30 (208)
377 2bme_A RAB4A, RAS-related prot 92.9 0.07 2.4E-06 48.9 3.9 26 18-43 8-33 (186)
378 1z0j_A RAB-22, RAS-related pro 92.8 0.058 2E-06 48.4 3.2 25 20-44 6-30 (170)
379 4dcu_A GTP-binding protein ENG 92.8 0.25 8.4E-06 53.4 8.7 94 21-114 24-142 (456)
380 3rlf_A Maltose/maltodextrin im 92.8 0.056 1.9E-06 57.6 3.5 28 18-45 27-54 (381)
381 1wms_A RAB-9, RAB9, RAS-relate 92.8 0.059 2E-06 48.9 3.2 24 20-43 7-30 (177)
382 2qgz_A Helicase loader, putati 92.8 0.06 2E-06 55.4 3.6 101 20-122 152-266 (308)
383 2ged_A SR-beta, signal recogni 92.7 0.068 2.3E-06 49.5 3.7 27 18-44 46-72 (193)
384 2yyz_A Sugar ABC transporter, 92.7 0.057 2E-06 57.1 3.5 27 18-44 27-53 (359)
385 2p67_A LAO/AO transport system 92.7 0.1 3.5E-06 54.3 5.4 38 17-54 53-93 (341)
386 1u8z_A RAS-related protein RAL 92.7 0.075 2.6E-06 47.3 3.8 24 20-43 4-27 (168)
387 2gj8_A MNME, tRNA modification 92.7 0.069 2.4E-06 49.2 3.6 24 20-43 4-27 (172)
388 3q72_A GTP-binding protein RAD 92.6 0.057 1.9E-06 48.5 2.9 20 22-41 4-23 (166)
389 2it1_A 362AA long hypothetical 92.6 0.06 2E-06 57.0 3.5 27 18-44 27-53 (362)
390 3q85_A GTP-binding protein REM 92.6 0.061 2.1E-06 48.4 3.1 21 22-42 4-24 (169)
391 3nh6_A ATP-binding cassette SU 92.6 0.041 1.4E-06 56.9 2.1 28 18-45 78-105 (306)
392 2zej_A Dardarin, leucine-rich 92.6 0.057 1.9E-06 50.1 2.9 21 22-42 4-24 (184)
393 3tui_C Methionine import ATP-b 92.6 0.062 2.1E-06 57.0 3.5 27 18-44 52-78 (366)
394 2b8t_A Thymidine kinase; deoxy 92.6 0.076 2.6E-06 52.4 3.9 28 17-44 9-36 (223)
395 3tw8_B RAS-related protein RAB 92.6 0.07 2.4E-06 48.4 3.4 25 18-42 7-31 (181)
396 1upt_A ARL1, ADP-ribosylation 92.6 0.091 3.1E-06 47.2 4.2 26 18-43 5-30 (171)
397 1r2q_A RAS-related protein RAB 92.6 0.067 2.3E-06 47.9 3.2 24 20-43 6-29 (170)
398 1svi_A GTP-binding protein YSX 92.5 0.081 2.8E-06 49.0 3.9 26 18-43 21-46 (195)
399 1u0j_A DNA replication protein 92.5 0.079 2.7E-06 53.8 4.1 28 18-45 102-129 (267)
400 2bbs_A Cystic fibrosis transme 92.5 0.056 1.9E-06 55.4 2.9 27 18-44 62-88 (290)
401 1vg8_A RAS-related protein RAB 92.5 0.079 2.7E-06 49.6 3.8 26 18-43 6-31 (207)
402 1v43_A Sugar-binding transport 92.5 0.064 2.2E-06 57.0 3.5 27 18-44 35-61 (372)
403 2nzj_A GTP-binding protein REM 92.5 0.082 2.8E-06 47.7 3.8 23 20-42 4-26 (175)
404 1c1y_A RAS-related protein RAP 92.5 0.085 2.9E-06 47.1 3.8 23 21-43 4-26 (167)
405 4dsu_A GTPase KRAS, isoform 2B 92.4 0.08 2.7E-06 48.5 3.7 25 19-43 3-27 (189)
406 2erx_A GTP-binding protein DI- 92.4 0.081 2.8E-06 47.4 3.6 23 21-43 4-26 (172)
407 2oil_A CATX-8, RAS-related pro 92.4 0.085 2.9E-06 48.9 3.9 27 17-43 22-48 (193)
408 1z47_A CYSA, putative ABC-tran 92.4 0.058 2E-06 56.9 3.0 27 18-44 39-65 (355)
409 2hxs_A RAB-26, RAS-related pro 92.4 0.093 3.2E-06 47.6 4.0 25 19-43 5-29 (178)
410 3bh0_A DNAB-like replicative h 92.4 0.069 2.4E-06 55.0 3.5 27 17-43 65-91 (315)
411 1z0f_A RAB14, member RAS oncog 92.4 0.087 3E-06 47.6 3.8 26 18-43 13-38 (179)
412 1z08_A RAS-related protein RAB 92.3 0.085 2.9E-06 47.4 3.7 25 19-43 5-29 (170)
413 3d31_A Sulfate/molybdate ABC t 92.3 0.054 1.8E-06 57.0 2.6 27 18-44 24-50 (348)
414 2h17_A ADP-ribosylation factor 92.3 0.073 2.5E-06 49.1 3.3 28 16-43 17-44 (181)
415 2g6b_A RAS-related protein RAB 92.3 0.092 3.1E-06 47.7 3.9 27 17-43 7-33 (180)
416 1r8s_A ADP-ribosylation factor 92.2 0.082 2.8E-06 47.3 3.4 21 23-43 3-23 (164)
417 3gd7_A Fusion complex of cysti 92.2 0.072 2.5E-06 56.9 3.5 25 18-42 45-69 (390)
418 2pjz_A Hypothetical protein ST 92.2 0.06 2.1E-06 54.3 2.7 25 20-44 30-54 (263)
419 1ojl_A Transcriptional regulat 92.2 0.074 2.5E-06 54.5 3.4 33 20-52 25-60 (304)
420 2zr9_A Protein RECA, recombina 92.2 0.067 2.3E-06 56.2 3.1 36 19-54 60-98 (349)
421 3con_A GTPase NRAS; structural 92.2 0.089 3.1E-06 48.6 3.7 24 20-43 21-44 (190)
422 1g29_1 MALK, maltose transport 92.2 0.064 2.2E-06 56.9 3.0 27 18-44 27-53 (372)
423 3kkq_A RAS-related protein M-R 92.2 0.11 3.6E-06 47.6 4.2 26 18-43 16-41 (183)
424 1nij_A Hypothetical protein YJ 92.2 0.068 2.3E-06 55.1 3.1 24 21-44 5-28 (318)
425 2efe_B Small GTP-binding prote 92.2 0.091 3.1E-06 47.8 3.7 26 18-43 10-35 (181)
426 2y8e_A RAB-protein 6, GH09086P 92.1 0.079 2.7E-06 47.9 3.2 24 20-43 14-37 (179)
427 1r6b_X CLPA protein; AAA+, N-t 92.1 0.12 4E-06 59.5 5.3 36 21-56 489-524 (758)
428 2cxx_A Probable GTP-binding pr 92.0 0.078 2.7E-06 48.7 3.0 21 23-43 4-24 (190)
429 1z06_A RAS-related protein RAB 91.9 0.1 3.6E-06 48.3 3.8 26 18-43 18-43 (189)
430 1xx6_A Thymidine kinase; NESG, 91.9 0.12 4.1E-06 49.6 4.3 27 18-44 6-32 (191)
431 1wf3_A GTP-binding protein; GT 91.9 0.36 1.2E-05 49.3 8.2 24 20-43 7-30 (301)
432 3lda_A DNA repair protein RAD5 91.9 0.068 2.3E-06 57.3 2.8 25 18-42 176-200 (400)
433 2i1q_A DNA repair and recombin 91.9 0.081 2.8E-06 54.2 3.3 26 18-43 96-121 (322)
434 2qen_A Walker-type ATPase; unk 91.9 0.13 4.4E-06 52.1 4.8 31 21-53 32-62 (350)
435 1m7b_A RND3/RHOE small GTP-bin 91.9 0.11 3.6E-06 48.1 3.8 26 18-43 5-30 (184)
436 3pqc_A Probable GTP-binding pr 91.9 0.11 3.7E-06 47.8 3.8 24 20-43 23-46 (195)
437 2ffh_A Protein (FFH); SRP54, s 91.8 0.12 4.1E-06 55.8 4.7 38 19-56 97-137 (425)
438 4bas_A ADP-ribosylation factor 91.8 0.095 3.3E-06 48.6 3.5 28 15-42 12-39 (199)
439 1oxx_K GLCV, glucose, ABC tran 91.8 0.055 1.9E-06 57.0 1.9 27 18-44 29-55 (353)
440 2yv5_A YJEQ protein; hydrolase 91.8 0.086 2.9E-06 54.0 3.3 25 20-45 165-189 (302)
441 1moz_A ARL1, ADP-ribosylation 91.8 0.083 2.8E-06 48.3 2.9 25 18-42 16-40 (183)
442 1mh1_A RAC1; GTP-binding, GTPa 91.8 0.093 3.2E-06 47.9 3.2 24 20-43 5-28 (186)
443 1fzq_A ADP-ribosylation factor 91.7 0.11 3.7E-06 48.1 3.7 26 18-43 14-39 (181)
444 1w4r_A Thymidine kinase; type 91.7 0.48 1.6E-05 45.8 8.3 101 13-114 13-128 (195)
445 2gf0_A GTP-binding protein DI- 91.7 0.13 4.3E-06 47.7 4.1 25 19-43 7-31 (199)
446 2a9k_A RAS-related protein RAL 91.7 0.12 4E-06 47.1 3.8 24 20-43 18-41 (187)
447 3t5g_A GTP-binding protein RHE 91.6 0.097 3.3E-06 47.8 3.2 25 19-43 5-29 (181)
448 1zd9_A ADP-ribosylation factor 91.6 0.12 4.1E-06 48.0 3.8 27 17-43 19-45 (188)
449 2bov_A RAla, RAS-related prote 91.5 0.13 4.5E-06 47.9 4.1 24 20-43 14-37 (206)
450 2pt7_A CAG-ALFA; ATPase, prote 91.5 0.053 1.8E-06 56.4 1.4 125 20-146 171-307 (330)
451 3ihw_A Centg3; RAS, centaurin, 91.5 0.14 4.7E-06 47.7 4.1 27 17-43 17-43 (184)
452 3t1o_A Gliding protein MGLA; G 91.5 0.1 3.5E-06 48.0 3.3 27 19-45 13-39 (198)
453 2rcn_A Probable GTPase ENGC; Y 91.5 0.091 3.1E-06 55.5 3.2 24 20-43 215-238 (358)
454 2fg5_A RAB-22B, RAS-related pr 91.5 0.12 4E-06 48.2 3.6 27 17-43 20-46 (192)
455 3tkl_A RAS-related protein RAB 91.5 0.13 4.4E-06 47.6 3.9 25 19-43 15-39 (196)
456 1gwn_A RHO-related GTP-binding 91.5 0.12 4.1E-06 49.2 3.8 27 17-43 25-51 (205)
457 3cbq_A GTP-binding protein REM 91.4 0.094 3.2E-06 49.4 3.0 24 18-41 21-44 (195)
458 2atv_A RERG, RAS-like estrogen 91.4 0.13 4.4E-06 48.0 3.8 26 18-43 26-51 (196)
459 1ls1_A Signal recognition part 91.4 0.12 4.1E-06 52.8 3.9 37 19-55 97-136 (295)
460 3dz8_A RAS-related protein RAB 91.4 0.11 3.8E-06 48.2 3.4 26 19-44 22-47 (191)
461 1x3s_A RAS-related protein RAB 91.3 0.11 3.7E-06 47.9 3.2 24 20-43 15-38 (195)
462 2a5j_A RAS-related protein RAB 91.3 0.14 4.9E-06 47.5 4.1 27 17-43 18-44 (191)
463 2gf9_A RAS-related protein RAB 91.3 0.14 4.8E-06 47.3 4.0 25 19-43 21-45 (189)
464 1zj6_A ADP-ribosylation factor 91.3 0.13 4.4E-06 47.5 3.7 26 18-43 14-39 (187)
465 1f2t_A RAD50 ABC-ATPase; DNA d 91.3 0.13 4.3E-06 47.1 3.6 24 20-43 23-46 (149)
466 2h57_A ADP-ribosylation factor 91.3 0.097 3.3E-06 48.5 2.8 29 16-44 17-45 (190)
467 2qag_B Septin-6, protein NEDD5 91.3 0.09 3.1E-06 56.9 2.9 26 18-43 38-65 (427)
468 3oes_A GTPase rhebl1; small GT 91.2 0.11 3.8E-06 48.7 3.2 25 19-43 23-47 (201)
469 3bwd_D RAC-like GTP-binding pr 91.2 0.12 4E-06 47.1 3.2 25 19-43 7-31 (182)
470 1u0l_A Probable GTPase ENGC; p 91.2 0.1 3.4E-06 53.4 3.1 25 20-44 169-193 (301)
471 2fu5_C RAS-related protein RAB 91.1 0.083 2.8E-06 48.4 2.2 25 19-43 7-31 (183)
472 3lxx_A GTPase IMAP family memb 91.1 0.13 4.3E-06 50.1 3.6 25 19-43 28-52 (239)
473 1zbd_A Rabphilin-3A; G protein 91.1 0.11 3.8E-06 48.6 3.1 24 20-43 8-31 (203)
474 1zcb_A G alpha I/13; GTP-bindi 91.1 0.086 3E-06 55.7 2.5 28 18-45 31-58 (362)
475 1m2o_B GTP-binding protein SAR 91.0 0.12 4.2E-06 48.2 3.3 26 18-43 21-46 (190)
476 1ksh_A ARF-like protein 2; sma 91.0 0.14 4.6E-06 47.1 3.5 26 18-43 16-41 (186)
477 1w5s_A Origin recognition comp 90.9 0.1 3.5E-06 54.4 2.9 26 19-44 49-76 (412)
478 2bcg_Y Protein YP2, GTP-bindin 90.9 0.15 5.2E-06 47.8 3.8 25 19-43 7-31 (206)
479 3nbx_X ATPase RAVA; AAA+ ATPas 90.9 0.079 2.7E-06 58.4 2.1 24 22-45 43-66 (500)
480 2p5s_A RAS and EF-hand domain 90.9 0.15 5.1E-06 47.8 3.8 27 17-43 25-51 (199)
481 1tf7_A KAIC; homohexamer, hexa 90.9 0.098 3.4E-06 57.7 2.8 24 18-41 37-60 (525)
482 3c5c_A RAS-like protein 12; GD 90.8 0.16 5.3E-06 47.3 3.8 26 18-43 19-44 (187)
483 2il1_A RAB12; G-protein, GDP, 90.8 0.14 4.8E-06 47.7 3.5 24 19-42 25-48 (192)
484 3reg_A RHO-like small GTPase; 90.7 0.15 5.3E-06 47.3 3.7 27 17-43 20-46 (194)
485 2oap_1 GSPE-2, type II secreti 90.7 0.089 3E-06 58.2 2.3 27 19-45 259-285 (511)
486 2fh5_B SR-beta, signal recogni 90.7 0.14 4.7E-06 48.4 3.4 25 19-43 6-30 (214)
487 3cph_A RAS-related protein SEC 90.7 0.14 4.6E-06 48.2 3.2 26 18-43 18-43 (213)
488 2npi_A Protein CLP1; CLP1-PCF1 90.7 0.11 3.9E-06 56.6 3.0 25 19-43 137-161 (460)
489 2xtp_A GTPase IMAP family memb 90.6 0.15 5.1E-06 50.2 3.7 25 19-43 21-45 (260)
490 2ew1_A RAS-related protein RAB 90.6 0.14 4.7E-06 48.7 3.2 25 19-43 25-49 (201)
491 2hjg_A GTP-binding protein ENG 90.6 0.67 2.3E-05 49.7 9.0 22 22-43 5-26 (436)
492 2iwr_A Centaurin gamma 1; ANK 90.6 0.15 5E-06 46.5 3.3 25 19-43 6-30 (178)
493 1f6b_A SAR1; gtpases, N-termin 90.5 0.15 5.1E-06 48.0 3.4 25 18-42 23-47 (198)
494 2b6h_A ADP-ribosylation factor 90.5 0.17 6E-06 47.2 3.8 25 18-42 27-51 (192)
495 1tq4_A IIGP1, interferon-induc 90.4 0.15 5.1E-06 54.9 3.7 24 19-42 68-91 (413)
496 2fv8_A H6, RHO-related GTP-bin 90.2 0.15 5.2E-06 48.1 3.2 25 19-43 24-48 (207)
497 2o52_A RAS-related protein RAB 90.2 0.18 6E-06 47.4 3.6 25 18-42 23-47 (200)
498 2qnr_A Septin-2, protein NEDD5 90.2 0.13 4.3E-06 52.7 2.7 22 21-42 19-40 (301)
499 3ozx_A RNAse L inhibitor; ATP 90.2 0.15 5.2E-06 56.7 3.5 29 16-44 21-49 (538)
500 3k1j_A LON protease, ATP-depen 90.1 0.14 4.7E-06 57.5 3.2 25 21-45 61-85 (604)
No 1
>3eti_A X (ADRP) domain, macro domain of non-structural protein 3; coronavirus, X domain, RNA binding protein; 2.20A {Feline infectious peritonitis virus} PDB: 3ew5_A* 3jzt_A*
Probab=99.94 E-value=1.6e-27 Score=228.01 Aligned_cols=110 Identities=26% Similarity=0.282 Sum_probs=99.4
Q ss_pred eEEEEEEcccce----ecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhc---CCCCCCCEEEecCC
Q 007244 343 KKFFTFVGDITR----LYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERA---KSLYPGNSVIVPLP 415 (611)
Q Consensus 343 ~~v~i~~GDIt~----~~~~~~~~~daIVN~aN~~L~~~ggGVa~aI~~aAG~~l~~e~~~~~---~~~~~G~~v~T~l~ 415 (611)
.+|.+++||||+ +. +||||||||+.|. +||||++||+++|||+|++||+++. +++++|++++|+
T Consensus 10 ~~i~l~~GDIt~~~~~~~------vDaIVNaAN~~l~-~ggGV~~AI~~aaG~~l~~ec~~~~~~~g~~~~G~a~iT~-- 80 (168)
T 3eti_A 10 GKVSFYQGDLDVLINFLE------PDVLVNAANGDLR-HVGGVARAIDVFTGGKLTKRSKEYLKSSKAIAPGNAVLFE-- 80 (168)
T ss_dssp TTEEEEESCHHHHHHHHC------CSEEEEEECTTCC-CCSTTHHHHHHHTTTHHHHHHHHHHTTSCCCCTTEEEEEE--
T ss_pred CeEEEEeCcccccCCCCC------CCEEEeCCCcccC-CCchHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEec--
Confidence 468999999999 66 9999999999999 8999999999999999999999873 789999999998
Q ss_pred CCCCCCCCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHhhccccCC
Q 007244 416 STSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFLSIVRSQEKL 477 (611)
Q Consensus 416 ~~~~~~~~l~~k~ViH~vgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a~siafp~~~~ 477 (611)
+| ++++||||+|||.|+.. ...++|++||+++|+.+.|||||+||-
T Consensus 81 ----g~--l~~~~VIHtVgP~~~~~----------~~~~~L~~~y~~~L~~~~SIAfP~Ist 126 (168)
T 3eti_A 81 ----NV--LEHLSVMNAVGPRNGDS----------RVEGKLCNVYKAIAKCDGKILTPLISV 126 (168)
T ss_dssp ----EE--ETTEEEEEEECCCTTST----------THHHHHHHHHHHHHTSCSCEEECCTTB
T ss_pred ----CC--CCccEEEEecCCCCCcc----------hHHHHHHHHHHHHHHhcCceeeccccc
Confidence 34 67799999999999642 347899999999999989999999993
No 2
>3q71_A Poly [ADP-ribose] polymerase 14; structural genomics, structural genomics consortium, SGC, transferase, PARP14 macro 2; HET: AR6; 2.20A {Homo sapiens}
Probab=99.94 E-value=1.2e-26 Score=230.90 Aligned_cols=120 Identities=14% Similarity=0.149 Sum_probs=106.3
Q ss_pred hhcCCeEEEEEEcccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhc--CCCCCCCEEEecCC
Q 007244 338 KHINPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERA--KSLYPGNSVIVPLP 415 (611)
Q Consensus 338 ~~~~~~~v~i~~GDIt~~~~~~~~~~daIVN~aN~~L~~~ggGVa~aI~~aAG~~l~~e~~~~~--~~~~~G~~v~T~l~ 415 (611)
.+.++.+|.|++||||++. +||||||||..|.+++|||++||+++||++|++||+++. +.+++|++++|+
T Consensus 34 ~t~~g~~I~i~~GDIt~~~------vDAIVNaAN~~l~~~gGGV~~AI~~aaG~~L~~ec~~~~~~~~~~~G~a~iT~-- 105 (221)
T 3q71_A 34 VSPGGLQMLLVKEGVQNAK------TDVVVNSVPLDLVLSRGPLSKSLLEKAGPELQEELDTVGQGVAVSMGTVLKTS-- 105 (221)
T ss_dssp ECTTCCEEEEEESCGGGCC------SSEEEEECCTTCCTTSSHHHHHHHHHHCTHHHHHHHHHHHTSCCCTTCEEEEE--
T ss_pred eecCCcEEEEEeCcccCCc------CCEEEECCCCCCCCCCchHHHHHHHHHhHHHHHHHHHHhccCCCCCCeEEEEc--
Confidence 5778999999999999997 999999999999657899999999999999999999974 479999999998
Q ss_pred CCCCCCCCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHH-----HhhccccCCC
Q 007244 416 STSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFL-----SIVRSQEKLS 478 (611)
Q Consensus 416 ~~~~~~~~l~~k~ViH~vgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a~-----siafp~~~~~ 478 (611)
+| +|+|+||||+|||.|+... ....++|++||++||++|. |||||+||-+
T Consensus 106 ----g~-~Lp~k~VIHtVgP~~~~~~--------~~~~~~L~~~y~~~L~~A~e~~i~SIAfPaIsTG 160 (221)
T 3q71_A 106 ----SW-NLDCRYVLHVVAPEWRNGS--------TSSLKIMEDIIRECMEITESLSLKSIAFPAIGTG 160 (221)
T ss_dssp ----CT-TSSSSEEEEECCCCCTTTC--------HHHHHHHHHHHHHHHHHHHHTTCCEEEEECTTSS
T ss_pred ----CC-CCCCCEEEEeCCCCCcCCC--------chHHHHHHHHHHHHHHHHHHhCCceEeeccccCC
Confidence 33 4789999999999998652 2356899999999999874 9999999933
No 3
>3q6z_A Poly [ADP-ribose] polymerase 14; structural genomics consortium, SGC, ADP-ribose binding, TRA; HET: APR; 2.23A {Homo sapiens}
Probab=99.93 E-value=2.7e-26 Score=227.63 Aligned_cols=119 Identities=29% Similarity=0.334 Sum_probs=105.2
Q ss_pred hcCCeEEEEEEcccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhc---CCCCCCCEEEecCC
Q 007244 339 HINPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERA---KSLYPGNSVIVPLP 415 (611)
Q Consensus 339 ~~~~~~v~i~~GDIt~~~~~~~~~~daIVN~aN~~L~~~ggGVa~aI~~aAG~~l~~e~~~~~---~~~~~G~~v~T~l~ 415 (611)
..++.+|.|++||||++. +||||||||+.|. ++|||++||+++|||+|++||+++. +.+++|++++|+
T Consensus 33 ~~~g~~I~v~~GDIt~~~------vDaIVNaAN~~l~-~ggGV~~AI~~aaG~~l~~ec~~~~~~~g~~~~G~a~iT~-- 103 (214)
T 3q6z_A 33 LAPGVVLIVQQGDLARLP------VDVVVNASNEDLK-HYGGLAAALSKAAGPELQADCDQIVKREGRLLPGNATISK-- 103 (214)
T ss_dssp EETTEEEEEEECCTTSCS------SSEEEEEECTTCC-CCSHHHHHHHHHHCTHHHHHHHHHHHHHCCCCTTCEEEEE--
T ss_pred cCCCcEEEEEecccccCc------CCEEEeCCCCCCC-CCchHHHHHHHhhhHHHHHHHHHHHHHcCCCCCCeEEEEc--
Confidence 457899999999999997 9999999999999 8999999999999999999999874 789999999998
Q ss_pred CCCCCCCCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH-----HHhhccccCCC
Q 007244 416 STSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEKLS 478 (611)
Q Consensus 416 ~~~~~~~~l~~k~ViH~vgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a-----~siafp~~~~~ 478 (611)
++ +|+|+||||+|||.|+.... ....++|++||++||++| .|||||+||-+
T Consensus 104 ----~~-~L~~k~VIH~VgP~~~~~~~-------~~~~~~L~~~y~~~L~~A~~~~i~SIAfP~IstG 159 (214)
T 3q6z_A 104 ----AG-KLPYHHVIHAVGPRWSGYEA-------PRCVYLLRRAVQLSLCLAEKYKYRSIAIPAISSG 159 (214)
T ss_dssp ----CT-TSSSSEEEEEECCCCCGGGH-------HHHHHHHHHHHHHHHHHHHHTTCSEEEECCTTSS
T ss_pred ----CC-CCCCCEEEEecCCcccCCCc-------chHHHHHHHHHHHHHHHHHHcCCcEEEECcccCC
Confidence 33 48899999999999976421 234689999999999987 49999999933
No 4
>1spv_A Putative polyprotein/phosphatase; structural genomoics, alpha/beta monomeric protein, structural genomics, PSI, protein structure initiative; HET: MES; 2.00A {Escherichia coli} SCOP: c.50.1.2
Probab=99.93 E-value=1.2e-25 Score=218.50 Aligned_cols=115 Identities=33% Similarity=0.419 Sum_probs=101.8
Q ss_pred CeEEEEEEcccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhc---CCCCCCCEEEecCCCCC
Q 007244 342 PKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERA---KSLYPGNSVIVPLPSTS 418 (611)
Q Consensus 342 ~~~v~i~~GDIt~~~~~~~~~~daIVN~aN~~L~~~ggGVa~aI~~aAG~~l~~e~~~~~---~~~~~G~~v~T~l~~~~ 418 (611)
+.+|.|++||||++. +|||||+||..|. +||||++||+++|||+|+++|+++. +.+++|++++|+
T Consensus 2 ~~~i~i~~GDIt~~~------~DaIVNaaN~~l~-~ggGv~~aI~~aaG~~l~~e~~~~~~~~g~~~~G~a~iT~----- 69 (184)
T 1spv_A 2 KTRIHVVQGDITKLA------VDVIVNAANPSLM-GGGGVDGAIHRAAGPALLDACLKVRQQQGDCPTGHAVITL----- 69 (184)
T ss_dssp -CCEEEEESCGGGCC------CSEEEEECCTTCS-CCSHHHHHHHHHHCHHHHHHHHHHHHHHCSCCTTCEEEEC-----
T ss_pred CCeEEEEeCcCCcCC------CCEEEECCCCCCC-CCchHHHHHHHHhCHHHHHHHHHHHHhcCCCCCCCEEEee-----
Confidence 357999999999997 9999999999999 8999999999999999999999873 789999999998
Q ss_pred CCCCCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHH-----HhhccccCCC
Q 007244 419 PLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFL-----SIVRSQEKLS 478 (611)
Q Consensus 419 ~~~~~l~~k~ViH~vgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a~-----siafp~~~~~ 478 (611)
+ .+|+|++|||+|||.|+.... ...++|++||++||++|. |||||+||-+
T Consensus 70 -~-~~L~~k~VIH~vgP~~~~~~~--------~~~~~L~~~y~~~L~~a~~~~~~SIAfP~IstG 124 (184)
T 1spv_A 70 -A-GDLPAKAVVHTVGPVWRGGEQ--------NEDQLLQDAYLNSLRLVAANSYTSVAFPAISTG 124 (184)
T ss_dssp -C-TTSSSSEEEEECCCCCSSSSS--------SHHHHHHHHHHHHHHHHHHTTCSEEEECCTTSS
T ss_pred -C-CCCCCCEEEEEcCCcccCCCc--------chHHHHHHHHHHHHHHHHHhCCceEEeccccCC
Confidence 2 347889999999999976532 347899999999999874 9999999933
No 5
>1yd9_A Core histone macro-H2A.1; alpha-beta structure, A1PP domain, macro-domain, structural protein; 1.60A {Rattus norvegicus} SCOP: c.50.1.2 PDB: 1zr3_A* 2fxk_A 3iid_A* 3iif_A* 1zr5_A
Probab=99.93 E-value=1.4e-25 Score=219.44 Aligned_cols=115 Identities=18% Similarity=0.134 Sum_probs=102.4
Q ss_pred cCCeEEEEEEcccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhc---CCCCCCCEEEecCCC
Q 007244 340 INPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERA---KSLYPGNSVIVPLPS 416 (611)
Q Consensus 340 ~~~~~v~i~~GDIt~~~~~~~~~~daIVN~aN~~L~~~ggGVa~aI~~aAG~~l~~e~~~~~---~~~~~G~~v~T~l~~ 416 (611)
..+.+|.|++||||++. +||||||||+.|. +||||++||+++|||+|+++|+++. +++++|++++|+
T Consensus 16 ~~~~~i~i~~GDIt~~~------~DaIVNaaN~~l~-~ggGv~~aI~~aaG~~l~~ec~~~~~~~g~~~~G~a~iT~--- 85 (193)
T 1yd9_A 16 FLGQKLQVVQADIASID------SDAVVHPTNTDFY-IGGEVGSTLEKKGGKEFVEAVLELRKKNGPLEVAGAAVSA--- 85 (193)
T ss_dssp TTSCEEEEECSCGGGCC------CSEEEEECCTTCC-CCSHHHHHHHHHHHHHHHHHHHHHHHHHCSCCTTCEEEEE---
T ss_pred CCCCEEEEEeCccCcCc------CCEEEECCCccCC-CCchHHHHHHHHhhHHHHHHHHHHHHHcCCCCCCCEEEec---
Confidence 34689999999999997 9999999999999 8999999999999999999999863 789999999998
Q ss_pred CCCCCCCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH-----HHhhccccCCC
Q 007244 417 TSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEKLS 478 (611)
Q Consensus 417 ~~~~~~~l~~k~ViH~vgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a-----~siafp~~~~~ 478 (611)
+ .+|+|+||||+|||.|+.. ...++|++||++||++| .|||||+||-+
T Consensus 86 ---~-~~L~~k~VIH~vgP~~~~~----------~~~~~L~~~y~~~L~~a~~~~~~SIAfP~IstG 138 (193)
T 1yd9_A 86 ---G-HGLPAKFVIHCNSPVWGSD----------KCEELLEKTVKNCLALADDRKLKSIAFPSIGSG 138 (193)
T ss_dssp ---C-TTSSSSEEEEECCCCTTST----------THHHHHHHHHHHHHHHHHHTTCSEEEECCCSBS
T ss_pred ---C-CCCCCCEEEEeCCCCcCCc----------chHHHHHHHHHHHHHHHHHhCCceEeecccccC
Confidence 3 3478899999999999642 34789999999999987 49999999933
No 6
>2xd7_A Core histone macro-H2A.2; chromosomal protein, nucleosome core, chromatin regulator, nucleus, DNA-binding protein, phosphoprotein; 2.09A {Homo sapiens}
Probab=99.93 E-value=1.4e-25 Score=219.42 Aligned_cols=115 Identities=15% Similarity=0.095 Sum_probs=102.6
Q ss_pred cCCeEEEEEEccccee---cccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhc---CCCCCCCEEEec
Q 007244 340 INPKKFFTFVGDITRL---YTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERA---KSLYPGNSVIVP 413 (611)
Q Consensus 340 ~~~~~v~i~~GDIt~~---~~~~~~~~daIVN~aN~~L~~~ggGVa~aI~~aAG~~l~~e~~~~~---~~~~~G~~v~T~ 413 (611)
..+.+|.|++||||++ . +||||||||..|. +||||++||+++||++|+++|+++. +++++|++++|+
T Consensus 16 ~~~~~i~i~~GDIt~~~~~~------~DaIVNaaN~~l~-~ggGv~~aI~~aaG~~l~~ec~~~~~~~g~~~~G~a~iT~ 88 (193)
T 2xd7_A 16 VLGQKLSLTQSDISHIGSMR------VEGIVHPTTAEID-LKEDIGKALEKAGGKEFLETVKELRKSQGPLEVAEAAVSQ 88 (193)
T ss_dssp TTSCEEEEEECCGGGGGGCC------CSEEEEEECTTCC-CCSHHHHHHHHHHHHHHHHHHHHHHHHTCSCCTTCEEEEE
T ss_pred CCCCEEEEEeCcccccCCCC------CCEEEECCCccCC-CccHHHHHHHHHhhHHHHHHHHHHHHHcCCCCCCCeEEee
Confidence 3568999999999999 7 9999999999999 8999999999999999999999863 789999999998
Q ss_pred CCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH-----HHhhccccCCC
Q 007244 414 LPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEKLS 478 (611)
Q Consensus 414 l~~~~~~~~~l~~k~ViH~vgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a-----~siafp~~~~~ 478 (611)
+ .+|+|+||||+|||.|+.. ...++|++||++||++| .|||||+||-+
T Consensus 89 ------~-~~L~~k~VIH~vgP~~~~~----------~~~~~L~~~y~~~L~~a~~~~~~SIAfP~IstG 141 (193)
T 2xd7_A 89 ------S-SGLAAKFVIHCHIPQWGSD----------KCEEQLEETIKNCLSAAEDKKLKSVAFPPFPSG 141 (193)
T ss_dssp ------C-TTSSSSEEEEEECCCTTST----------THHHHHHHHHHHHHHHHHHTTCSEEEECCCCCS
T ss_pred ------C-CCCCCCEEEEECCCcCCCc----------chHHHHHHHHHHHHHHHHHcCCCEEEeccccCC
Confidence 2 3478899999999999642 34789999999999987 49999999933
No 7
>4abl_A Poly [ADP-ribose] polymerase 14; transferase, PARP14; 1.15A {Homo sapiens} PDB: 4abk_A
Probab=99.92 E-value=2.2e-25 Score=216.16 Aligned_cols=111 Identities=23% Similarity=0.255 Sum_probs=101.4
Q ss_pred HhhhhhcCCeEEEEEEcccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhcCCCCCCCEEEec
Q 007244 334 KAAQKHINPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVP 413 (611)
Q Consensus 334 ~~~~~~~~~~~v~i~~GDIt~~~~~~~~~~daIVN~aN~~L~~~ggGVa~aI~~aAG~~l~~e~~~~~~~~~~G~~v~T~ 413 (611)
..+++++++.+|+|++||||++. +||||||||+.|. +||||++||+++||++|++||+++ +++++|++++|+
T Consensus 13 ~~~~~~ig~~~i~i~~GDIt~~~------~DaIVNaaN~~l~-~ggGV~~aI~~aaG~~l~~ec~~~-~~~~~G~a~iT~ 84 (183)
T 4abl_A 13 GVYEMKIGSIIFQVASGDITKEE------ADVIVNSTSNSFN-LKAGVSKAILECAGQNVERECSQQ-AQQRKNDYIITG 84 (183)
T ss_dssp TCEEEEETTEEEEEEESCGGGCB------CSEEEEEECTTSC-CCSTHHHHHHHHHCHHHHHHHHHH-HHHSCCSEEEEE
T ss_pred CceEEEECCEEEEEEeCcccCcc------cCEEEECCCCCCC-CCccHHHHHHHHhhHHHHHHHHHh-cCCCCCceEEec
Confidence 45778899999999999999997 9999999999999 899999999999999999999987 579999999998
Q ss_pred CCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH-----HHhhccccCC
Q 007244 414 LPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEKL 477 (611)
Q Consensus 414 l~~~~~~~~~l~~k~ViH~vgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a-----~siafp~~~~ 477 (611)
++ +|+|+||||+|||.| |++||++||++| .|||||+||-
T Consensus 85 ------~~-~L~~k~VIH~vgP~~------------------L~~~y~~~L~~a~~~~~~SIAfP~Ist 128 (183)
T 4abl_A 85 ------GG-FLRCKNIIHVIGGND------------------VKSSVSSVLQECEKKNYSSICLPAIGT 128 (183)
T ss_dssp ------CT-TSBSSEEEEEETTSC------------------HHHHHHHHHHHHHHTTCCEEEECCTTS
T ss_pred ------CC-CCCCCEEEEeCcHHH------------------HHHHHHHHHHHHHHcCCCeEeeccccC
Confidence 33 478999999999963 999999999987 4999999993
No 8
>2x47_A Macro domain-containing protein 1; signaling protein, signal transduction, estrogen signaling; 1.70A {Homo sapiens}
Probab=99.92 E-value=3e-25 Score=223.11 Aligned_cols=115 Identities=31% Similarity=0.334 Sum_probs=101.9
Q ss_pred CeEEEEEEcccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhcCCCCCCCEEEecCCCCCCCC
Q 007244 342 PKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPLC 421 (611)
Q Consensus 342 ~~~v~i~~GDIt~~~~~~~~~~daIVN~aN~~L~~~ggGVa~aI~~aAG~~l~~e~~~~~~~~~~G~~v~T~l~~~~~~~ 421 (611)
+.+|.|++||||++. +||||||||..|. +||||++||+++||++|+++|+++ +++++|++++|+ +
T Consensus 61 ~~~i~i~~GDIt~~~------vDaIVNaAN~~l~-~ggGV~~AI~~aaG~~l~~ec~~~-g~~~~G~a~iT~------~- 125 (235)
T 2x47_A 61 NEKISLLRSDITKLE------VDAIVNAANSSLL-GGGGVDGCIHRAAGPLLTDECRTL-QSCKTGKAKITG------G- 125 (235)
T ss_dssp HTTEEEEESCGGGEE------SSEEEEECCTTCS-CCSHHHHHHHHHHCHHHHHHHHTS-CCCCBTCEEEEE------C-
T ss_pred CCEEEEEeCccCccc------CCEEEEecCcccC-CccHHHHHHHHHhCHHHHHHHHHh-CCCCCCceEEec------C-
Confidence 367999999999998 9999999999999 999999999999999999999876 789999999998 3
Q ss_pred CCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH-----HHhhccccCCC
Q 007244 422 GREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEKLS 478 (611)
Q Consensus 422 ~~l~~k~ViH~vgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a-----~siafp~~~~~ 478 (611)
.+|+|+||||+|||.|+... .....++|++||++||++| .|||||+||-+
T Consensus 126 ~~L~~k~VIH~vgP~~~~~~-------~~~~~~~L~~~y~~~L~~A~e~~i~SIAfP~IstG 180 (235)
T 2x47_A 126 YRLPAKYVIHTVGPIAYGEP-------SASQAAELRSCYLSSLDLLLEHRLRSVAFPCISTG 180 (235)
T ss_dssp TTSSSSEEEEEBCCCCTTCC-------CHHHHHHHHHHHHHHHHHHHHTTCCEEEECCTTCS
T ss_pred CCCCCCEEEEecCccccCCC-------CcchHHHHHHHHHHHHHHHHHhCCceEEeccccCC
Confidence 34789999999999997532 1245789999999999987 49999999933
No 9
>3ejg_A Non-structural protein 3; HCOV 229E, X-domain, macro domain, NSP3, ADRP, hydrolase, ribosomal frameshifting, RNA-binding; 1.78A {Human coronavirus 229E} PDB: 3ewr_A* 3ewq_A*
Probab=99.91 E-value=5.1e-25 Score=214.45 Aligned_cols=108 Identities=23% Similarity=0.288 Sum_probs=96.7
Q ss_pred CeEEEEEEcccce----ecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHh---cCCCCCCCEEEecC
Q 007244 342 PKKFFTFVGDITR----LYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAER---AKSLYPGNSVIVPL 414 (611)
Q Consensus 342 ~~~v~i~~GDIt~----~~~~~~~~~daIVN~aN~~L~~~ggGVa~aI~~aAG~~l~~e~~~~---~~~~~~G~~v~T~l 414 (611)
+.+|.+++||||+ +. +||||||||+.|. +||||++||+++||++|++||+++ .+++++|++++|+
T Consensus 37 ~~~i~l~~GDIt~~~~~~~------vDAIVNaAN~~L~-~ggGV~~AI~~aaG~~l~~ec~~l~~~~g~~~~G~a~iT~- 108 (193)
T 3ejg_A 37 HDNVAFYQGDVDTVVNGVD------FDFIVNAANENLA-HGGGLAKALDVYTKGKLQRLSKEHIGLAGKVKVGTGVMVE- 108 (193)
T ss_dssp ETTEEEEECCHHHHHHHCC------CSEEEEEECTTCC-CCSHHHHHHHHHTTTHHHHHHHHHHHHHCSCCTTCEEEEE-
T ss_pred CCeEEEEeCcccccCcCCC------cCEEEeCCCcccC-CCchHHHHHHHHhhHHHHHHHHHHHHHcCCCCCCCEEEec-
Confidence 4679999999999 65 9999999999999 899999999999999999999986 3789999999998
Q ss_pred CCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHhhccccCC
Q 007244 415 PSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFLSIVRSQEKL 477 (611)
Q Consensus 415 ~~~~~~~~~l~~k~ViH~vgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a~siafp~~~~ 477 (611)
+++ | +|||+|||.|+. ...++|++||++||+.+.|||||+||-
T Consensus 109 -----~~~-L---~VIHtVGP~~~~-----------~~~~~L~~~y~~~L~~~~SIAfPaIst 151 (193)
T 3ejg_A 109 -----CDS-L---RIFNVVGPRKGK-----------HERDLLIKAYNTINNEQGTPLTPILSC 151 (193)
T ss_dssp -----ETT-E---EEEEEECCCSST-----------THHHHHHHHHHHHHHSSSCEEECCTTC
T ss_pred -----CCC-e---eEEEecCCCCCc-----------hHHHHHHHHHHHHHHhcCceeeccccc
Confidence 344 3 999999999953 246899999999999888999999993
No 10
>2dx6_A Hypothetical protein TTHA0132; conserved hypothetical protein, structural genomics, NPPSFA; 1.78A {Thermus thermophilus} PDB: 3v45_A
Probab=99.90 E-value=5.5e-24 Score=201.93 Aligned_cols=110 Identities=27% Similarity=0.292 Sum_probs=99.0
Q ss_pred eEEEEEEcccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhcCCCCCCCEEEecCCCCCCCCC
Q 007244 343 KKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPLCG 422 (611)
Q Consensus 343 ~~v~i~~GDIt~~~~~~~~~~daIVN~aN~~L~~~ggGVa~aI~~aAG~~l~~e~~~~~~~~~~G~~v~T~l~~~~~~~~ 422 (611)
++|.+++|||+++. +|||||+||..|. +||||++||++++|++|+++|++. +++++|++++|+ + .
T Consensus 2 ~~i~i~~GDI~~~~------~daIVnaaN~~l~-~ggGv~~aI~~~~G~~l~~~c~~~-g~~~~G~a~it~------~-~ 66 (159)
T 2dx6_A 2 ARIRVVQGDITEFQ------GDAIVNAANNYLK-LGAGVAGAILRKGGPSIQEECDRI-GKIRVGEAAVTG------A-G 66 (159)
T ss_dssp CEEEEEESCGGGCC------SSEEEEEEETTCC-CCSTTHHHHHHHHCTHHHHHHHHH-CCCCTTCEEEEE------C-T
T ss_pred eEEEEEECcCCcCC------CCEEEECCCCCCC-CCchHHHHHHHHhCHHHHHHHHhc-CCCCCCcEEEec------C-C
Confidence 47899999999997 9999999999999 899999999999999999999986 789999999998 2 3
Q ss_pred CCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH-----HHhhccccCCC
Q 007244 423 REGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEKLS 478 (611)
Q Consensus 423 ~l~~k~ViH~vgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a-----~siafp~~~~~ 478 (611)
+|++++|||+|||.|+ . . ..+.|++||+++|+.+ .|||||+||-+
T Consensus 67 ~L~~~~Vih~vgp~~~-~-~---------~~~~L~~~~~~~L~~a~~~~~~sIa~P~igtG 116 (159)
T 2dx6_A 67 NLPVRYVIHAAVLGDE-P-A---------SLETVRKATKSALEKAVELGLKTVAFPLLGTG 116 (159)
T ss_dssp TSSSSEEEEEEEESSS-C-C---------CHHHHHHHHHHHHHHHHHTTCSEEEECCTTSS
T ss_pred CCCCCEEEEEeCCCCC-C-c---------hHHHHHHHHHHHHHHHHHcCCcEEEECCccCC
Confidence 4788999999999997 2 1 2689999999999987 49999999943
No 11
>3kh6_A Poly [ADP-ribose] polymerase 15; macro, PARP, BAL3, B-aggressive lymphoma protein 3, SGC, structural genomics consortium, alternative splicing; HET: APR; 2.20A {Homo sapiens} PDB: 3v2b_A*
Probab=99.90 E-value=7.1e-24 Score=207.90 Aligned_cols=111 Identities=27% Similarity=0.271 Sum_probs=100.8
Q ss_pred hhhhhcCCeEEEEEEcccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhcCCCCCCCEEEecC
Q 007244 335 AAQKHINPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPL 414 (611)
Q Consensus 335 ~~~~~~~~~~v~i~~GDIt~~~~~~~~~~daIVN~aN~~L~~~ggGVa~aI~~aAG~~l~~e~~~~~~~~~~G~~v~T~l 414 (611)
.+++++++.+|++++||||++. +|||||+||..|. +||||++||+++||++|+++|+++ +.+++|++++|+
T Consensus 25 ~~~~~i~~~~i~i~~GDIt~~~------vDaIVNaaN~~l~-~ggGV~~AI~~aaG~~l~~ec~~~-~~~~~G~a~iT~- 95 (199)
T 3kh6_A 25 AYEMKIGAITFQVATGDIATEQ------VDVIVNSTARTFN-RKSGVSRAILEGAGQAVESECAVL-AAQPHRDFIITP- 95 (199)
T ss_dssp EEEEEETTEEEEEEESCGGGCC------SSEEEEEECTTSC-CCSTHHHHHHHHHCHHHHHHHHHH-HTSCCCSSEEEE-
T ss_pred ceEEEECCEEEEEEecccccCc------CCEEEECCCCCCC-CCchHHHHHHHHhhHHHHHHHHHh-CCCCCCeEEEec-
Confidence 3778899999999999999997 9999999999999 899999999999999999999987 679999999998
Q ss_pred CCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH-----HHhhccccCCC
Q 007244 415 PSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEKLS 478 (611)
Q Consensus 415 ~~~~~~~~~l~~k~ViH~vgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a-----~siafp~~~~~ 478 (611)
++ +|+|+||||+|||. .|++||++||++| .|||||+||-+
T Consensus 96 -----g~-~L~~k~VIH~vgp~------------------~L~~~y~~~L~~a~~~~i~SIAfP~IgtG 140 (199)
T 3kh6_A 96 -----GG-CLKCKIIIHVPGGK------------------DVRKTVTSVLEECEQRKYTSVSLPAIGTG 140 (199)
T ss_dssp -----CT-TSSSSEEEEEETTS------------------CHHHHHHHHHHHHHHTTCCEEEECCTTSS
T ss_pred -----CC-CCCCCEEEEeCCCH------------------HHHHHHHHHHHHHHHcCCCEEeecccccC
Confidence 33 47899999999983 3899999999987 49999999943
No 12
>3gqe_A Non-structural protein 3; macro domain, X domain, venezuelan equine encephalitis virus alphavirus; HET: BCN; 2.30A {Venezuelan equine encephalitis virus} PDB: 3gqo_A*
Probab=99.89 E-value=3.8e-24 Score=204.56 Aligned_cols=107 Identities=28% Similarity=0.387 Sum_probs=93.7
Q ss_pred CeEEEEEEcccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhcCCCCCCCEEEecCCCCCCCC
Q 007244 342 PKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPLC 421 (611)
Q Consensus 342 ~~~v~i~~GDIt~~~~~~~~~~daIVN~aN~~L~~~ggGVa~aI~~aAG~~l~~e~~~~~~~~~~G~~v~T~l~~~~~~~ 421 (611)
..+|.|++||||++. +||||||||+.|. +||||++||+++||++++ .+.+++|++++|+.
T Consensus 3 ~~~i~v~~GDIt~~~------vDAIVNaAN~~l~-~ggGV~~aI~~aaG~~l~------~~~~~~G~a~iT~~------- 62 (168)
T 3gqe_A 3 APSYHVVRGDIATAT------EGVIINAANSKGQ-PGGGVCGALYKKFPESFD------LQPIEVGKARLVKG------- 62 (168)
T ss_dssp CCEEEEEESCGGGCC------SSEEEEEECTTSC-CTTGGGSHHHHHCGGGCC------CCCCCTTCEEEECC-------
T ss_pred CCeEEEEeCcccCcc------cCEEEeCCCcccC-CCccHHHHHHHHhhHHhc------CCCcCCCcEEEEcC-------
Confidence 468999999999997 9999999999999 899999999999999875 37899999999983
Q ss_pred CCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH-----HHhhccccCCC
Q 007244 422 GREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEKLS 478 (611)
Q Consensus 422 ~~l~~k~ViH~vgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a-----~siafp~~~~~ 478 (611)
+++||||+|||.|+... ..++.++|++||+++|++| .|||||+||-+
T Consensus 63 ---~~k~VIH~VgP~~~~~~-------~~~~~~~L~~~y~~~L~~a~~~~~~SIAfP~IstG 114 (168)
T 3gqe_A 63 ---AAKHIIHAVGPNFNKVS-------EVEGDKQLAEAYESIAKIVNDNNYKSVAIPLLSTG 114 (168)
T ss_dssp ---TTCCEEEEECCCTTTSC-------HHHHHHHHHHHHHHHHHHHHHTTCSEEEEECTTSS
T ss_pred ---CCCEEEEcCCCccCCCC-------chhHHHHHHHHHHHHHHHHHHcCCCEEEECCcccC
Confidence 35999999999998652 1234689999999999987 49999999933
No 13
>2acf_A Replicase polyprotein 1AB; ADRP domain, SARS NSP-3, APPR-1-P phosphatase, structural GE joint center for structural genomics, JCSG; 1.40A {Sars coronavirus TOR2} SCOP: c.50.1.2 PDB: 2fav_A*
Probab=99.89 E-value=2.4e-24 Score=208.60 Aligned_cols=110 Identities=26% Similarity=0.343 Sum_probs=97.0
Q ss_pred CeEEEEEEccccee----cccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHh---cCCCCCCCEEEecC
Q 007244 342 PKKFFTFVGDITRL----YTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAER---AKSLYPGNSVIVPL 414 (611)
Q Consensus 342 ~~~v~i~~GDIt~~----~~~~~~~~daIVN~aN~~L~~~ggGVa~aI~~aAG~~l~~e~~~~---~~~~~~G~~v~T~l 414 (611)
+.+|.|++||||++ . +||||||||+.|. +||||++||+++||++|++||+++ .+++++|++++|+
T Consensus 19 ~~~i~i~~GDIt~~~~~~~------vDAIVNaAN~~l~-~ggGV~~AI~~aaG~~l~~ec~~~~~~~g~~~~G~a~iT~- 90 (182)
T 2acf_A 19 TDNVAIKCVDIVKEAQSAN------PMVIVNAANIHLK-HGGGVAGALNKATNGAMQKESDDYIKLNGPLTVGGSCLLS- 90 (182)
T ss_dssp SSSEEEEESCHHHHHHHHC------CSEEEEECCTTCC-CCSHHHHHHHHHTTTHHHHHHHHHHHHHCCCCTTCEEEEE-
T ss_pred CCeEEEEeCcccccccCCC------CCEEEECCCCCCC-CCchHHHHHHHHhCHHHHHHHHHHHHHcCCCCCCcEEEee-
Confidence 35799999999999 7 9999999999999 899999999999999999999986 3789999999998
Q ss_pred CCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHhhccccCC
Q 007244 415 PSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFLSIVRSQEKL 477 (611)
Q Consensus 415 ~~~~~~~~~l~~k~ViH~vgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a~siafp~~~~ 477 (611)
+++ |+ ++|||+|||.|+.+. ..++|++||+++ ..+.|||||+||-
T Consensus 91 -----~~~-L~-~~VIH~vgP~~~~~~----------~~~~L~~~y~~~-~~~~SIAfP~Ist 135 (182)
T 2acf_A 91 -----GHN-LA-KKCLHVVGPNLNAGE----------DIQLLKAAYENF-NSQDILLAPLLSA 135 (182)
T ss_dssp -----CTT-TC-SEEEEECCCCGGGTC----------CTTHHHHHHHGG-GGSSEEEECCTTC
T ss_pred -----CCC-CC-ceEEEECCCCCCCCc----------hHHHHHHHHHHh-cCCCEEEECCccc
Confidence 344 54 799999999997532 257999999998 5688999999993
No 14
>3gpg_A NSP3, non-structural protein 3; macro domain, X domain, alphavirus, VIZI enzymes involved in replication, ATP-binding, cell membrane endosome; 1.65A {Chikungunya virus} PDB: 3gpo_A* 3gpq_A
Probab=99.89 E-value=3.1e-24 Score=205.06 Aligned_cols=106 Identities=24% Similarity=0.232 Sum_probs=91.5
Q ss_pred eEEEEEEcccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhcCCCCCCCEEEecCCCCCCCCC
Q 007244 343 KKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPLCG 422 (611)
Q Consensus 343 ~~v~i~~GDIt~~~~~~~~~~daIVN~aN~~L~~~ggGVa~aI~~aAG~~l~~e~~~~~~~~~~G~~v~T~l~~~~~~~~ 422 (611)
....|++||||++. +||||||||+.|. +||||++||+++||++++ .+.+++|++++|+.
T Consensus 10 ~~~~~~~GDIt~~~------vDAIVNaAN~~l~-~ggGV~~aI~~aaG~~l~------~~~~~~G~a~iT~~-------- 68 (168)
T 3gpg_A 10 PSYRVKRMDIAKND------EECVVNAANPRGL-PGDGVCKAVYKKWPESFK------NSATPVGTAKTVMC-------- 68 (168)
T ss_dssp CCC-CEESCGGGCC------SSCEEEECCTTCC-CCSHHHHHHHHHCGGGGT------TCCCCTTCEEEEEE--------
T ss_pred CceEEEeCcCCccc------CCEEEeCCCcccC-CCchHHHHHHHHhhHHhh------cCCCCCCCEEEecC--------
Confidence 45679999999998 9999999999999 899999999999999874 37899999999993
Q ss_pred CCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH-----HHhhccccCCC
Q 007244 423 REGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEKLS 478 (611)
Q Consensus 423 ~l~~k~ViH~vgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a-----~siafp~~~~~ 478 (611)
+|++|||+|||.|+.... .++.++|++||++||++| .|||||+||-+
T Consensus 69 --~~k~VIHtVGP~~~~~~~-------~~~~~~L~~~y~~~L~~A~~~~~~SIAfP~IstG 120 (168)
T 3gpg_A 69 --GTYPVIHAVGPNFSNYSE-------SEGDRELAAAYREVAKEVTRLGVNSVAIPLLSTG 120 (168)
T ss_dssp --TTEEEEEECCCCTTTSCH-------HHHHHHHHHHHHHHHHHHHHHTCSEEEEECTTSS
T ss_pred --CCCEEEEeCCCCcCCCCc-------chHHHHHHHHHHHHHHHHHHhCCcEEEECccccC
Confidence 369999999999987531 234689999999999987 49999999933
No 15
>2vri_A Non-structural protein 3; RNA replication, nucleotide-binding, endonuclease, macro domain, viral protein, ATP-binding, exonuclease; 1.8A {Human coronavirus NL63}
Probab=99.89 E-value=6.4e-24 Score=204.43 Aligned_cols=113 Identities=25% Similarity=0.277 Sum_probs=96.9
Q ss_pred CeEEEEEEcccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHh---cCCCCCCCEEEecCCCCC
Q 007244 342 PKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAER---AKSLYPGNSVIVPLPSTS 418 (611)
Q Consensus 342 ~~~v~i~~GDIt~~~~~~~~~~daIVN~aN~~L~~~ggGVa~aI~~aAG~~l~~e~~~~---~~~~~~G~~v~T~l~~~~ 418 (611)
+.+|.+++||||++.. ...+||||||||..|. +||||++||+++|||+|+++|+++ .+++++|++++|+
T Consensus 16 ~~~i~i~~GDIt~~~~--~~~~DaIVNaaN~~l~-~ggGv~~AI~~aaG~~l~~ec~~~~~~~g~~~~G~a~iT~----- 87 (174)
T 2vri_A 16 YKNVKFYLGDISHLVN--CVSFDFVVNAANENLL-HGGGVARAIDILTEGQLQSLSKDYISSNGPLKVGAGVMLE----- 87 (174)
T ss_dssp ETTEEEEESCHHHHTT--TSCCSEEEEEECTTCC-CCSHHHHHHHHHTTTHHHHHHHHHHHHHCSCCTTCEEEEE-----
T ss_pred CCeEEEEecccccccc--CCCccEEEECCCccCC-CCCcHhHHHHHHhhHHHHHHHHHHHHhcCCCCCCeEEEEE-----
Confidence 3569999999999810 0129999999999999 999999999999999999999986 3789999999998
Q ss_pred CCCCCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHhhccccCCC
Q 007244 419 PLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFLSIVRSQEKLS 478 (611)
Q Consensus 419 ~~~~~l~~k~ViH~vgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a~siafp~~~~~ 478 (611)
+++ .+|||+|||+|+.. ..++|++||+++|+...|||||+||-+
T Consensus 88 -~~~----l~VIH~vgP~~~~~-----------~~~~L~~~y~~~L~~~~SIAfP~IstG 131 (174)
T 2vri_A 88 -CEK----FNVFNVVGPRTGKH-----------EHSLLVEAYNSILFENGIPLMPLLSCG 131 (174)
T ss_dssp -CSS----CEEEEEECCCSSTT-----------HHHHHHHHHHHHHHSSSCEEEECSSCG
T ss_pred -CCC----CEEEEEcCCCCCcc-----------hHHHHHHHHHHHHhhCCcEEeCccccC
Confidence 333 39999999999421 378999999999998889999999933
No 16
>1vhu_A Hypothetical protein AF1521; structural genomics, unknown function; HET: MSE MES; 1.34A {Archaeoglobus fulgidus} SCOP: c.50.1.2 PDB: 2bfq_A* 1hjz_A* 2bfr_A*
Probab=99.89 E-value=1.4e-23 Score=208.00 Aligned_cols=120 Identities=28% Similarity=0.255 Sum_probs=105.0
Q ss_pred HhhhhhcCCeEEEEEEcccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhc----HHHHHHHHHh---cCC--C
Q 007244 334 KAAQKHINPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAG----PALEVATAER---AKS--L 404 (611)
Q Consensus 334 ~~~~~~~~~~~v~i~~GDIt~~~~~~~~~~daIVN~aN~~L~~~ggGVa~aI~~aAG----~~l~~e~~~~---~~~--~ 404 (611)
..++.++++++|.|++||||++. +||||||||..|. +||||++||+++|| |+|+++|+++ .++ +
T Consensus 12 ~~~~~~~~~~~i~i~~GDIt~~~------vDaIVNaaN~~l~-~ggGV~~aI~~aaG~~~~~~l~~ec~~~~~~~g~~~~ 84 (211)
T 1vhu_A 12 VLFEAKVGDITLKLAQGDITQYP------AKAIVNAANKRLE-HGGGVAYAIAKACAGDAGLYTEISKKAMREQFGRDYI 84 (211)
T ss_dssp EEEEEEETTEEEEEEESCGGGSC------CSEEEEEECTTCC-CCSHHHHHHHHHHHSSHHHHHHHHHHHHHHHHSSSCC
T ss_pred hhhheeECCEEEEEEecccCcCC------CCEEEECCCcccc-CccHHHHHHHHHhCCCchHHHHHHHHHHHHHcCCCcc
Confidence 34567899999999999999997 9999999999999 89999999999999 9999999984 266 9
Q ss_pred CCCCEEEecCCCCCCCCCCCCc---cEEEEecCC----CCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH-----HHhhc
Q 007244 405 YPGNSVIVPLPSTSPLCGREGV---THVIHVLGP----NMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVR 472 (611)
Q Consensus 405 ~~G~~v~T~l~~~~~~~~~l~~---k~ViH~vgP----~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a-----~siaf 472 (611)
++|++++|+ + ..|++ +||||+||| .|+. ...++|++||++||++| .||||
T Consensus 85 ~~G~a~iT~------~-~~L~~~g~k~VIH~vgP~~~~~~~~-----------~~~~~L~~~y~~~L~~A~~~~i~SIAf 146 (211)
T 1vhu_A 85 DHGEVVVTP------A-MNLEERGIKYVFHTVGPICSGMWSE-----------ELKEKLYKAFLGPLEKAEEMGVESIAF 146 (211)
T ss_dssp CTTCCEEEE------C-GGGGGGTCCEEEEEECCCCTTCCCH-----------HHHHHHHHHHHHHHHHHHHHTCCEEEE
T ss_pred cCCcEEEEE------C-CCCCccCcCEEEEecCCccccccCc-----------chHHHHHHHHHHHHHHHHHcCCCEEEe
Confidence 999999998 2 23556 999999999 8842 24689999999999987 49999
Q ss_pred cccCCC
Q 007244 473 SQEKLS 478 (611)
Q Consensus 473 p~~~~~ 478 (611)
|+||-+
T Consensus 147 P~IstG 152 (211)
T 1vhu_A 147 PAVSAG 152 (211)
T ss_dssp CCTTSS
T ss_pred ccccCC
Confidence 999943
No 17
>3ejf_A Non-structural protein 3; IBV, coronavirus, X-domain, macro domain, NSP3, ADRP, hydrolase, ribosomal frameshifting; 1.60A {Avian infectious bronchitis virus} PDB: 3eke_A* 3ewo_A 3ewp_A*
Probab=99.89 E-value=6.4e-24 Score=204.16 Aligned_cols=119 Identities=24% Similarity=0.258 Sum_probs=97.6
Q ss_pred hcCCeEEEEEEcccceecccC--cccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhc---CCCCCCCEEEec
Q 007244 339 HINPKKFFTFVGDITRLYTGG--GLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERA---KSLYPGNSVIVP 413 (611)
Q Consensus 339 ~~~~~~v~i~~GDIt~~~~~~--~~~~daIVN~aN~~L~~~ggGVa~aI~~aAG~~l~~e~~~~~---~~~~~G~~v~T~ 413 (611)
.-++.+|+|++||||++..+. +.++||||||||+.|. +||||++||+++|||+|++||+++. ++++ +++|+
T Consensus 10 ~~~~~~i~v~~GDIt~~~vDa~~~~~~DaIVNaAN~~L~-~ggGV~~AI~~aaG~~l~~ec~~~~~~~g~~~---a~iT~ 85 (176)
T 3ejf_A 10 KPKFLEYKTCVGDLTVVIAKALDEFKEFCIVNAANEHMT-HGSGVAKAIADFCGLDFVEYCEDYVKKHGPQQ---RLVTP 85 (176)
T ss_dssp CCSSCEEEEEESCHHHHHHHHHHHHSSEEEEEECCTTCC-CCSHHHHHHHHHHCHHHHHHHHHHHHHHCCCS---EEEEC
T ss_pred CCCCceEEEEeeeCeEEeecccccCCCCEEEeCCCcccC-CCchHHHHHHHHhhHHHHHHHHHHHHhcCCCC---eeecc
Confidence 346789999999999996211 2235679999999999 8999999999999999999999873 6666 77887
Q ss_pred CCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHH-HHHhhccccCCC
Q 007244 414 LPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEG-FLSIVRSQEKLS 478 (611)
Q Consensus 414 l~~~~~~~~~l~~k~ViH~vgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~-a~siafp~~~~~ 478 (611)
|+ .+.+++|||+|||.|+.. ...++|++||+++|+. +.|||||+||-+
T Consensus 86 ------G~-~l~t~~VIHtVGP~~~~~----------~~~~~L~~~y~~~L~~~~~SIAfPaIstG 134 (176)
T 3ejf_A 86 ------SF-VKGIQCVNNVVGPRHGDN----------NLHEKLVAAYKNVLVDGVVNYVVPVLSLG 134 (176)
T ss_dssp ------CC-STTEEEEEEECCCCTTCS----------CHHHHHHHHHHTTCCTTCCEEEEECCCTT
T ss_pred ------cc-cccCCEEEEeCCCCCCCc----------cHHHHHHHHHHHHHHcCCcEEEECccccC
Confidence 22 367799999999999542 2468999999999983 679999999943
No 18
>1njr_A 32.1 kDa protein in ADH3-RCA1 intergenic region; structural genomics, dimer, two domain organization, PSI, PR structure initiative; HET: XYL; 1.90A {Saccharomyces cerevisiae} SCOP: c.50.1.2 PDB: 1txz_A* 1ty8_A*
Probab=99.86 E-value=6.8e-22 Score=203.24 Aligned_cols=135 Identities=18% Similarity=0.165 Sum_probs=101.1
Q ss_pred CeEEEEEEcccceec---ccCcc----cccEEEeCCCCCCcCCCChhhHHHHHhhc-HHHHHHHHHh--cCCCCCCCEEE
Q 007244 342 PKKFFTFVGDITRLY---TGGGL----CCNVIANAANWRLKPGGGGVNAAIFSAAG-PALEVATAER--AKSLYPGNSVI 411 (611)
Q Consensus 342 ~~~v~i~~GDIt~~~---~~~~~----~~daIVN~aN~~L~~~ggGVa~aI~~aAG-~~l~~e~~~~--~~~~~~G~~v~ 411 (611)
+.+|.|++||||++. .+|++ .+||||||||+.|. +||||++||+++|| +.|+++|++. .+.+++|++++
T Consensus 44 ~~~i~i~~GDIt~l~~~~~~~~~~~~~~vDAIVNaANs~l~-~gGGVd~AI~raaGg~~l~~ec~~~~~~g~~~~G~a~i 122 (284)
T 1njr_A 44 DKYLCIHHGHLQSLMDSMRKGDAIHHGHSYAIVSPGNSYGY-LGGGFDKALYNYFGGKPFETWFRNQLGGRYHTVGSATV 122 (284)
T ss_dssp -CCEEEEESCHHHHHHHHHTTCC----CCEEEEECCBTTCC-CCSSHHHHHHHHHTSHHHHHHHHHHTTTSCCCTTCCEE
T ss_pred CCEEEEEeCCHhhhhhhccccccccCCCccEEEeCCCCCCC-CCchHHHHHHHhhCcHHHHHHHHHHHhcCCCCCCeEEE
Confidence 568999999999991 12222 39999999999999 99999999999975 7889999986 36799999999
Q ss_pred ecCC---CCCCCCCCCCccEEEEecCCCCCCCC-CCCCCCCchhhHHHHHHHHHHHHHHH----HHhhccccCCC
Q 007244 412 VPLP---STSPLCGREGVTHVIHVLGPNMNPRR-PNCLDGDYVKGCEILRKAYTSLFEGF----LSIVRSQEKLS 478 (611)
Q Consensus 412 T~l~---~~~~~~~~l~~k~ViH~vgP~~~~~~-~~~~~~~~~~~~~~L~~ay~~~L~~a----~siafp~~~~~ 478 (611)
|+.. ..+-...+|+|+||||+|||.|.... .+. .+.+....+.|++||+++|..| .|||||+||-+
T Consensus 123 T~~~~~~~~~~~~~~L~~k~VIHtvgp~~~~~~~~d~-~~p~~~~~~~L~~~~~~~L~~ae~~i~SIAfPaIsTG 196 (284)
T 1njr_A 123 VDLQRCLEEKTIECRDGIRYIIHVPTVVAPSAPIFNP-QNPLKTGFEPVFNAMWNALMHSPKDIDGLIIPGLCTG 196 (284)
T ss_dssp EEGGGGGCC----CCTTEEEEEECCCBSCSSSCSCCT-TCHHHHTHHHHHHHHHHHHHTSCTTCSEEEECCTTCS
T ss_pred EECCcccccccchhcCCCCEEEEeCCCccCCCCCccc-ccccccHHHHHHHHHHHHHHHHHhCCCEEEECccccc
Confidence 9821 00000127999999999999996541 000 0000124689999999999964 69999999944
No 19
>4gua_A Non-structural polyprotein; viral precursor polyprotein, protease, zinc-binding, hydrola; HET: MES; 2.85A {Sindbis virus}
Probab=99.84 E-value=3.9e-21 Score=207.95 Aligned_cols=161 Identities=19% Similarity=0.251 Sum_probs=115.6
Q ss_pred CCCCChHHHHHHHHHHHHHHHHh---cC-------CeEEEEeecCcch------hhhhhhHHHhhhhhc---C-CeEEEE
Q 007244 288 DFQFNNEKASDVIIEKVEEFVNK---LG-------NARLVLVDLTQGS------KILSLVRAKAAQKHI---N-PKKFFT 347 (611)
Q Consensus 288 i~gfP~~~aa~Iiv~tv~~f~~~---~~-------~i~iV~vd~s~~s------~~Ls~V~s~~~~~~~---~-~~~v~i 347 (611)
-|||--.....|+....+.|... .| ++-++|..+.... ..|+..-+..|.-.. | -..+.|
T Consensus 269 ~YGyADr~sE~vv~alaRkF~~~rv~~p~~~~snTEv~~~f~~~Dn~r~r~~~~~~l~~~l~~iy~g~~~~aG~APsfrI 348 (670)
T 4gua_A 269 SYGYADRNSEDVVTALARKFVRVSAARPDCVSSNTEMYLIFRQLDNSRTRQFTPHHLNCVISSVYEGTRDGVGAAPSYRT 348 (670)
T ss_dssp ESCCCSHHHHHHHHHHHHTEEEEEEECCTTCSBTTCEEEEEEEECCCSSCCCCSHHHHHHHHHHHTTSCCCCCCCCCEEE
T ss_pred EeeccccchHHHHHHHHhheeeeeeeCCCccccCceEEEEEEecCCCcccccCHHHhhhHHHHhhhccccccCcCcceeE
Confidence 37887666666666555555332 12 2445553233211 122222122233222 2 147999
Q ss_pred EEcccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhcCCCCCCCEEEecCCCCCCCCCCCCcc
Q 007244 348 FVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPLCGREGVT 427 (611)
Q Consensus 348 ~~GDIt~~~~~~~~~~daIVN~aN~~L~~~ggGVa~aI~~aAG~~l~~e~~~~~~~~~~G~~v~T~l~~~~~~~~~l~~k 427 (611)
++||||+.. +|||||+||..|. +||||++||+++||+++.. +.+++|++++|+ ++. +
T Consensus 349 IRgDITk~~------vDAIVNAANtsL~-gGgGVdGAIhraaG~~ll~------~~~~tG~AkIT~------g~a----K 405 (670)
T 4gua_A 349 KRENIADCQ------EEAVVNAANPLGR-PGEGVCRAIYKRWPTSFTD------SATETGTARMTV------CLG----K 405 (670)
T ss_dssp ECSCGGGCC------SSEEEEECCTTCC-CCSSHHHHHHHHCGGGGTT------CCCCTTCEEEEE------ETT----E
T ss_pred Eeccccccc------cCEEEeCCCCCCC-CcCCHhHHHHHHhhHHHhc------CCCCcceEEEec------CCC----c
Confidence 999999998 9999999999999 8999999999999998875 468999999998 333 9
Q ss_pred EEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHH-----HhhccccCCC
Q 007244 428 HVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFL-----SIVRSQEKLS 478 (611)
Q Consensus 428 ~ViH~vgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a~-----siafp~~~~~ 478 (611)
||||+|||+|+.... .+..++|++||+++|++|. |||||+|+-+
T Consensus 406 yIIHtVGPvw~~g~~-------~E~~~lLascYrnsLkLA~e~~~kSIAFPLISTG 454 (670)
T 4gua_A 406 KVIHAVGPDFRKHPE-------AEALKLLQNAYHAVADLVNEHNIKSVAIPLLSTG 454 (670)
T ss_dssp EEEEECCCCTTSSCH-------HHHHHHHHHHHHHHHHHHHHTTCSEEEECCTTSS
T ss_pred eEEEcCCCCccCCCC-------chHHHHHHHHHHHHHHHHHHcCCcEEEEcccccc
Confidence 999999999987632 2345799999999999974 9999999943
No 20
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=99.71 E-value=3.7e-17 Score=177.08 Aligned_cols=142 Identities=23% Similarity=0.328 Sum_probs=125.4
Q ss_pred cCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHHHHHHHHHHCCCcEEEecCCCCHHHHHH
Q 007244 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNLEREQRTD 95 (611)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L~~Gk~VIID~tnl~~~~R~~ 95 (611)
...+|.+|+|+|+|||||||+|++|++.++ +.+|+.|.+. .+..+...+.+.+..|..||+|++++...+|..
T Consensus 254 ~~~~~~lIil~G~pGSGKSTla~~L~~~~~--~~~i~~D~~~-----~~~~~~~~~~~~l~~g~~vIiD~~~~~~~~r~~ 326 (416)
T 3zvl_A 254 LSPNPEVVVAVGFPGAGKSTFIQEHLVSAG--YVHVNRDTLG-----SWQRCVSSCQAALRQGKRVVIDNTNPDVPSRAR 326 (416)
T ss_dssp CCSSCCEEEEESCTTSSHHHHHHHHTGGGT--CEECCGGGSC-----SHHHHHHHHHHHHHTTCCEEEESCCCSHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHhcC--cEEEccchHH-----HHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHH
Confidence 356689999999999999999999999887 7789999873 456677888999999999999999999999999
Q ss_pred HHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhccCCCccCCccEEEEcCC
Q 007244 96 FVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQN 165 (611)
Q Consensus 96 ~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~e~P~~~EgFd~V~vv~~ 165 (611)
++.+ +..+..+.+|+|++|.++|++|+.+|..+.. ....++++++.++.+.+++|...|+|+.|+.++-
T Consensus 327 ~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~R~~~~~-~~~~~~~~~~~~~~~~~e~P~~~E~fd~v~~v~~ 396 (416)
T 3zvl_A 327 YIQCAKDAGVPCRCFNFCATIEQARHNNRFREMTDP-SHAPVSDMVMFSYRKQFEPPTLAEGFLEILEIPF 396 (416)
T ss_dssp HHHHHHHHTCCEEEEEECCCHHHHHHHHHHHHHHCT-TCCCCCHHHHHHHHHHCCCCCGGGTCSEEEEECC
T ss_pred HHHHHHHcCCeEEEEEEeCCHHHHHHHHHhhcccCC-CcCCCCHHHHHHHHHhcCCCCcccCCcEEEEEec
Confidence 9999 8888889999999999999999999987433 2236789999999999999999999999998873
No 21
>2jyc_A Uncharacterized protein C6ORF130; macro domain, A1PP domain, BC011709, protein structure initiative, PSI-2; NMR {Homo sapiens} PDB: 2lgr_A
Probab=99.68 E-value=4.7e-17 Score=154.49 Aligned_cols=108 Identities=11% Similarity=0.125 Sum_probs=90.8
Q ss_pred CCeEEEEEEcccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhcCCCCCCCEEEecCCCCCCC
Q 007244 341 NPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPL 420 (611)
Q Consensus 341 ~~~~v~i~~GDIt~~~~~~~~~~daIVN~aN~~L~~~ggGVa~aI~~aAG~~l~~e~~~~~~~~~~G~~v~T~l~~~~~~ 420 (611)
++++|++++||||+.. .+|+|||+||..|. +||||++||++++|. + .+|.+ +.+++|++++|+.
T Consensus 18 ~~~~i~~v~GDIt~~~-----~~daIVnaaN~~~~-~GgGVa~ai~~~~p~-~-~e~~~--~~~~~G~a~it~~------ 81 (160)
T 2jyc_A 18 EGSRITYVKGDLFACP-----KTDSLAHCISEDCR-MGAGIAVLFKKKFGG-V-QELLN--QQKKSGEVAVLKR------ 81 (160)
T ss_dssp CSCSEEEEESCSSSSC-----SSCEEEEEECTTCC-CCSSTHHHHHHHHCC-H-HHHHH--HCCCTTCEEEEEE------
T ss_pred CCceEEEEeCcCCCCC-----CCCEEEEccCCcCC-CCCcHHHHHHHHChH-H-HHHhc--cCCCCCcEEEEec------
Confidence 5688999999999875 25999999999999 999999999999954 4 57765 5799999999982
Q ss_pred CCCCCccEEEEecCCC-CCCCCCCCCCCCchhhHHHHHHHHHHHHHHHH-----HhhccccCCC
Q 007244 421 CGREGVTHVIHVLGPN-MNPRRPNCLDGDYVKGCEILRKAYTSLFEGFL-----SIVRSQEKLS 478 (611)
Q Consensus 421 ~~~l~~k~ViH~vgP~-~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a~-----siafp~~~~~ 478 (611)
+.++|||++||. |.. .+ ..+.|++||+++|+.+. |||||+||-+
T Consensus 82 ----~~~~Vih~vg~~~~~~-~~---------~~~~l~~~l~~~l~~a~~~~~~sIa~P~IgtG 131 (160)
T 2jyc_A 82 ----DGRYIYYLITKKRASH-KP---------TYENLQKSLEAMKSHCLKNGVTDLSMPRIGCG 131 (160)
T ss_dssp ----TTEEEEEEECSSSTTS-CC---------CHHHHHHHHHHHHHHHHHHTCCEEEEESCCSS
T ss_pred ----CCcEEEEEecCCCCCC-CC---------hHHHHHHHHHHHHHHHHHcCCCEEEeCCCCCC
Confidence 238999999998 643 33 26899999999999864 9999999943
No 22
>2eee_A Uncharacterized protein C6ORF130; macro domain, A1PP domain, ADP-ribose binding, rossmann fold, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l8r_A*
Probab=99.68 E-value=3.8e-17 Score=153.37 Aligned_cols=108 Identities=11% Similarity=0.134 Sum_probs=90.3
Q ss_pred CCeEEEEEEcccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhcCCCCCCCEEEecCCCCCCC
Q 007244 341 NPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPL 420 (611)
Q Consensus 341 ~~~~v~i~~GDIt~~~~~~~~~~daIVN~aN~~L~~~ggGVa~aI~~aAG~~l~~e~~~~~~~~~~G~~v~T~l~~~~~~ 420 (611)
++++|++++||||+.. .+|+|||++|..|. +||||++||++++| ++ .+|.+ +.+++|++++|+.
T Consensus 7 ~~~~i~~v~GDIt~~~-----~~daIVnaaN~~~~-~G~Gva~ai~~~~p-~~-~~~~~--~~~~~G~a~it~~------ 70 (149)
T 2eee_A 7 GGSRITYVKGDLFACP-----KTDSLAHCISEDCR-MGAGIAVLFKKKFG-GV-QELLN--QQKKSGEVAVLKR------ 70 (149)
T ss_dssp SSCCCEEECSCSSSSC-----SSCEEEEEEETTCC-CCSTTHHHHHHHTC-CH-HHHHT--TCCCTTCEEEEES------
T ss_pred CCeeEEEEecccccCC-----CCcEEEEEeCCCCC-cCCcHHHHHHHHCc-HH-HHHhc--ccCCCccEEEEEc------
Confidence 4678999999999975 26999999999999 99999999999995 45 46765 6799999999983
Q ss_pred CCCCCccEEEEecCCC-CCCCCCCCCCCCchhhHHHHHHHHHHHHHHHH-----HhhccccCCC
Q 007244 421 CGREGVTHVIHVLGPN-MNPRRPNCLDGDYVKGCEILRKAYTSLFEGFL-----SIVRSQEKLS 478 (611)
Q Consensus 421 ~~~l~~k~ViH~vgP~-~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a~-----siafp~~~~~ 478 (611)
+.++|||++||. |.. .++ .+.|++||+++|+.+. |||||+||-+
T Consensus 71 ----~~~~Vih~v~~~~~~~-~~~---------~~~l~~~l~~~l~~a~~~~~~sIa~P~IgtG 120 (149)
T 2eee_A 71 ----DGRYIYYLITKKRASH-KPT---------YENLQKSLEAMKSHCLKNGVTDLSMPRIGCG 120 (149)
T ss_dssp ----SSSEEEEEEEESSTTS-CCC---------HHHHHHHHHHHHHHHHHHTCCEEECCCCCCT
T ss_pred ----CCCEEEEEEecCCCCC-CCC---------HHHHHHHHHHHHHHHHHcCCCEEEeCCCCCC
Confidence 238999999998 644 332 6899999999999864 9999999943
No 23
>2fg1_A Conserved hypothetical protein BT1257; structural genomics, PSI, PROT structure initiative; HET: MSE; 1.25A {Bacteroides thetaiotaomicron} SCOP: c.50.1.2 PDB: 2afc_A
Probab=99.64 E-value=2.3e-16 Score=149.36 Aligned_cols=119 Identities=15% Similarity=0.056 Sum_probs=92.1
Q ss_pred CeEEEEEEcccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHh---cCCCCCCCEEEecCCCCC
Q 007244 342 PKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAER---AKSLYPGNSVIVPLPSTS 418 (611)
Q Consensus 342 ~~~v~i~~GDIt~~~~~~~~~~daIVN~aN~~L~~~ggGVa~aI~~aAG~~l~~e~~~~---~~~~~~G~~v~T~l~~~~ 418 (611)
.+.|++++||||+.. ...+|+|||++|..+. +||||++||++++ |++++++++. .+.+++|++++|+.
T Consensus 3 ~M~i~~v~GDit~~~---~~~~daIvn~~N~~~~-~G~Gva~ai~~~~-p~~~~~~~~~~~~~~~~~~G~~~i~~~---- 73 (158)
T 2fg1_A 3 AMEILYIKGDATAPI---GSGVKVITHICNDIGG-WGKGFVLALSKKW-KMPEEAYRQWYKSQEEFTLGAVQFVNV---- 73 (158)
T ss_dssp CCCCEEEESCTTSCC---SSSCEEEEEEEETTCC-CCSTHHHHHHHHC-SHHHHHHHHHHHHTSSCSTTCEEEEEE----
T ss_pred ceEEEEEecccCCCC---CCCCeEEEEEecCCCC-cCccHHHHHHHHC-ChHHHHHHHHHhhccCcCCccEEEEec----
Confidence 467899999999931 0127999999999999 9999999999999 6777776553 25789999999982
Q ss_pred CCCCCCCccEEEEecCCC-CCCCCCCCCCCCchhhHHHHHHHHHHHHHHHH----HhhccccCCC
Q 007244 419 PLCGREGVTHVIHVLGPN-MNPRRPNCLDGDYVKGCEILRKAYTSLFEGFL----SIVRSQEKLS 478 (611)
Q Consensus 419 ~~~~~l~~k~ViH~vgP~-~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a~----siafp~~~~~ 478 (611)
+ +.++|||++||. |...... ......+.|++||+++++.+. |||||.||.+
T Consensus 74 --~---~~~~Vi~~v~~~~~~~~~~~----~~~~~~~~l~~~l~~~~~~a~~~~~sIa~P~Ig~G 129 (158)
T 2fg1_A 74 --E---NKLYVANMIGQHGIYKDSKG----LPPIRYDAVRQCLKEVALFTIAHKASVHMPRIGCG 129 (158)
T ss_dssp --E---TTEEEEEEEEESSSSCCTTC----CCSBCHHHHHHHHHHHHHHHHHHTCEEEECCTTCS
T ss_pred --C---CCeEEEEEEEEcccCCCCCC----CccccHHHHHHHHHHHHHHHHHhCCeEEecCcCCC
Confidence 1 128999999998 7533210 011136899999999999875 9999999943
No 24
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=99.64 E-value=5.4e-16 Score=145.94 Aligned_cols=129 Identities=23% Similarity=0.298 Sum_probs=102.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHH-HcCCCeEEeecchhcc---C-------CCCcH-H-----HHHHHHHHHH---HCC
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMR-SSARPWARICQDTINK---G-------KSGTK-V-----QCLTSASSAL---KKG 78 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~-~~~~~~~~Is~D~i~~---~-------~~~~~-~-----~~~~~~~~~L---~~G 78 (611)
||.+|+|+|+|||||||+|+.|++ .++ +.+++.|.++. + .+... . .+...+...+ ..|
T Consensus 1 M~~~I~i~G~~GsGKST~a~~L~~~~~~--~~~i~~d~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g 78 (181)
T 1ly1_A 1 MKKIILTIGCPGSGKSTWAREFIAKNPG--FYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQFDTAKSILYGGDSV 78 (181)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHSTT--EEEECHHHHHHHHTTSCCGGGCCCCHHHHHHHHHHHHHHHHHHHTSCSSC
T ss_pred CCeEEEEecCCCCCHHHHHHHHHhhcCC--cEEecHHHHHHHhhCCCccchhhhchhhhhHHHHHHHHHHHHHHhhccCC
Confidence 578999999999999999999998 455 77898888742 1 11111 1 1235567778 789
Q ss_pred CcEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhccCCCccC
Q 007244 79 KSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSE 155 (611)
Q Consensus 79 k~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~e~P~~~E 155 (611)
..||+|+++....+|..+.++ +..++.+.+|+|++|.+++.+|+.+|..+ ..+++.+.++++.++.|...+
T Consensus 79 ~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~------~~~~~~i~~~~~~~~~~~~~~ 150 (181)
T 1ly1_A 79 KGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGTK------AVPIDVLRSMYKSMREYLGLP 150 (181)
T ss_dssp CEEEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCCCHHHHHHHHTTCGGG------CCCHHHHHHHHHHHHHHHTCC
T ss_pred CeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHhccccC------CCCHHHHHHHHHHhhccCCCC
Confidence 999999999999999888887 66677778999999999999999999864 467888999999888775444
No 25
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=99.52 E-value=1.5e-13 Score=139.27 Aligned_cols=128 Identities=23% Similarity=0.312 Sum_probs=99.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHH---cCCCeEEeecchhccCCCC--c-HHH-----HHHHHHHHHHCCCcEEEecCC
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRS---SARPWARICQDTINKGKSG--T-KVQ-----CLTSASSALKKGKSVFLDRCN 87 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~---~~~~~~~Is~D~i~~~~~~--~-~~~-----~~~~~~~~L~~Gk~VIID~tn 87 (611)
++.+|+|+|+|||||||+|+.|++. .+..+.+++.|.++..... . ... ....+...+.. ..||+|+++
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~~l~~~~~~~e~~~~~~~~~~i~~~l~~-~~vIiD~~~ 81 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFPVWKEKYEEFIKKSTYRLIDSALKN-YWVIVDDTN 81 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHTTSSSCCGGGHHHHHHHHHHHHHHHHTT-SEEEECSCC
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhC-CEEEEeCCc
Confidence 3569999999999999999999987 6655555688888643211 1 111 22455666766 889999999
Q ss_pred CCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhccCCCcc
Q 007244 88 LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLS 154 (611)
Q Consensus 88 l~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~e~P~~~ 154 (611)
+....|..+..+ +..+....+|+|++|.++|.+|+.+|.. ..+.+.++++...++.|...
T Consensus 82 ~~~~~~~~l~~~a~~~~~~~~vi~l~~~~e~~~~R~~~R~~-------~~~~~~l~~~~~~~e~~~~~ 142 (260)
T 3a4m_A 82 YYNSMRRDLINIAKKYNKNYAIIYLKASLDVLIRRNIERGE-------KIPNEVIKKMYEKFDEPGKK 142 (260)
T ss_dssp CSHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHHHHHTTC-------SSCHHHHHHHHHHCCCTTSS
T ss_pred ccHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHhCCC-------CCCHHHHHHHHHHhcCcccc
Confidence 999999988888 7677778899999999999999999863 34678899999989888753
No 26
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=99.51 E-value=4.6e-14 Score=144.74 Aligned_cols=127 Identities=23% Similarity=0.298 Sum_probs=101.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHc-CCCeEEeecchhcc-------CC---CCc-HH-----HHHHHHHHHH---HCC
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSS-ARPWARICQDTINK-------GK---SGT-KV-----QCLTSASSAL---KKG 78 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~-~~~~~~Is~D~i~~-------~~---~~~-~~-----~~~~~~~~~L---~~G 78 (611)
||.+|+|+|+|||||||+++.|++.+ + +.+++.|.++. ++ +.. .+ .+...+...+ ..|
T Consensus 1 M~~~I~l~G~~GsGKST~a~~L~~~~~~--~~~i~~D~~r~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g 78 (301)
T 1ltq_A 1 MKKIILTIGCPGSGKSTWAREFIAKNPG--FYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQFDTAKSILYGGDSV 78 (301)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHSTT--EEEECHHHHHHHHTTSCCCC---CCHHHHHHHHHHHHHHHHHHTTSCTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhCCC--cEEecccHHHHHhccCCcccccccchhhhhHHHHHHHHHHHHHHhhccCC
Confidence 57899999999999999999999874 5 77899887742 11 111 11 1235566777 788
Q ss_pred CcEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhccCCCc
Q 007244 79 KSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKL 153 (611)
Q Consensus 79 k~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~e~P~~ 153 (611)
..||+|++++...+|..+..+ +..++.+.+|+|++|.+++.+|+.+|..| .++++.++++++.++.+..
T Consensus 79 ~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~------~~~~e~i~~~~~~~~~~~~ 148 (301)
T 1ltq_A 79 KGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGTK------AVPIDVLRSMYKSMREYLG 148 (301)
T ss_dssp CEEEECSCCCCHHHHHHHHHHHHHTTCEEEEEECCCCHHHHHHHHHHCGGG------CCCHHHHHHHHHHHHHHHT
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHHhccCC------CCCHHHHHHHHHHHhcccC
Confidence 999999999999999999888 66778888999999999999999999865 4678888998888866543
No 27
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=99.46 E-value=1.1e-12 Score=126.95 Aligned_cols=144 Identities=17% Similarity=0.200 Sum_probs=103.1
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhcc---------CCCCcH---HHHHHHHHHHHHCCCcEEEec
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK---------GKSGTK---VQCLTSASSALKKGKSVFLDR 85 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~---------~~~~~~---~~~~~~~~~~L~~Gk~VIID~ 85 (611)
.++.+|+|+|+|||||||+++.|++.++ +.+++.|.+.. +..... ...+..+...+..|..+|+|+
T Consensus 16 ~~~~~I~l~G~~GsGKSTla~~L~~~lg--~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~vivd~ 93 (202)
T 3t61_A 16 RFPGSIVVMGVSGSGKSSVGEAIAEACG--YPFIEGDALHPPENIRKMSEGIPLTDDDRWPWLAAIGERLASREPVVVSC 93 (202)
T ss_dssp CCSSCEEEECSTTSCHHHHHHHHHHHHT--CCEEEGGGGCCHHHHHHHHHTCCCCHHHHHHHHHHHHHHHTSSSCCEEEC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC--CEEEeCCcCcchhhHHHHhcCCCCCchhhHHHHHHHHHHHhcCCCEEEEC
Confidence 4567999999999999999999999988 45588887742 221111 223456667778889999999
Q ss_pred CCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhccCCCccCCccEEEEcCC
Q 007244 86 CNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQN 165 (611)
Q Consensus 86 tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~e~P~~~EgFd~V~vv~~ 165 (611)
+++....+..+..+ .+....+|+|++|.+++.+|+.+|..+ ..+.+.+.++...++.+...+. .+++..+
T Consensus 94 ~~~~~~~~~~l~~~--~~~~~~vi~l~~~~e~~~~Rl~~R~~~------~~~~~~~~~~~~~~~~~~~~~~--~~~Id~~ 163 (202)
T 3t61_A 94 SALKRSYRDKLRES--APGGLAFVFLHGSESVLAERMHHRTGH------FMPSSLLQTQLETLEDPRGEVR--TVAVDVA 163 (202)
T ss_dssp CCCSHHHHHHHHHT--STTCCEEEEEECCHHHHHHHHHHHHSS------CCCHHHHHHHHHHCCCCTTSTT--EEEEESS
T ss_pred CCCCHHHHHHHHHh--cCCCeEEEEEeCCHHHHHHHHHHhhcc------CCCHHHHHHHHHhcCCCCCCCC--eEEEeCC
Confidence 99888888777665 233456899999999999999999764 2347888888888877653333 3433333
Q ss_pred hhhHHHHHH
Q 007244 166 ENDVQAALD 174 (611)
Q Consensus 166 ~~evd~av~ 174 (611)
..+++++.
T Consensus 164 -~~~~e~~~ 171 (202)
T 3t61_A 164 -QPLAEIVR 171 (202)
T ss_dssp -SCHHHHHH
T ss_pred -CCHHHHHH
Confidence 44444443
No 28
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=99.44 E-value=5.7e-13 Score=137.35 Aligned_cols=151 Identities=15% Similarity=0.172 Sum_probs=107.7
Q ss_pred cCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCC---------CcH--------H-H-HHHHHHHHHH
Q 007244 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKS---------GTK--------V-Q-CLTSASSALK 76 (611)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~---------~~~--------~-~-~~~~~~~~L~ 76 (611)
...+|.+|+|+|+|||||||+++.|++.++..+.+|+.|.++.... +.+ . . ....+...+.
T Consensus 29 ~~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~R~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~v~~~l~ 108 (287)
T 1gvn_B 29 AVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQHPNFDELVKLYEKDVVKHVTPYSNRMTEAIISRLSD 108 (287)
T ss_dssp CCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHHTTSTTHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHhHHhchhhHHHHHHccchhhhhhhHHHHHHHHHHHHHHHh
Confidence 3456899999999999999999999998854578899998863221 111 0 1 1245567788
Q ss_pred CCCcEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHH----HHHHHhcccccCCCCCCCHH----HHHHHHHhh
Q 007244 77 KGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLC----ISRSVKRIEHEGNLQGGKAA----AVVNRMLQK 147 (611)
Q Consensus 77 ~Gk~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~----~~Rl~~R~~~~g~~~~~vpe----evi~rm~~~ 147 (611)
.|.+||+|+++....++..+++. +..++.+.+++|.+|.+++ .+|+..|..+.+.....++. .+..++...
T Consensus 109 ~g~~vIld~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~p~~~~~l~~~~Rl~~R~~~g~l~~R~~~~e~~~~i~~rl~~a 188 (287)
T 1gvn_B 109 QGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGTIERYETMYADDPMTARATPKQAHDIVVKNLPTN 188 (287)
T ss_dssp HTCCEEECCCCCCSHHHHHHHHHHHTTTCEEEEEEECCCHHHHHHHHHHHHHHHHHHCTTTCCCCCHHHHHHHHHHHHHH
T ss_pred cCCeEEEECCCCCHHHHHHHHHHHHhCCCcEEEEEEECCHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999888888888887 7788888889999999999 88887775432211113443 344455555
Q ss_pred ccCCCccCCccEEEEcCCh
Q 007244 148 KELPKLSEGFSRITLCQNE 166 (611)
Q Consensus 148 ~e~P~~~EgFd~V~vv~~~ 166 (611)
+.+......||++++++..
T Consensus 189 ~~el~~~~~~d~v~v~d~~ 207 (287)
T 1gvn_B 189 LETLHKTGLFSDIRLYNRE 207 (287)
T ss_dssp HHHHHHHTCCSCEEEECTT
T ss_pred HHHHHcCCCCCeEEEEeCC
Confidence 5444445568888888753
No 29
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=99.42 E-value=7.9e-12 Score=117.76 Aligned_cols=145 Identities=15% Similarity=0.159 Sum_probs=95.5
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhcc---------CCCCcH------HH-HHHHHHHHHHCCCc
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK---------GKSGTK------VQ-CLTSASSALKKGKS 80 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~---------~~~~~~------~~-~~~~~~~~L~~Gk~ 80 (611)
..++.+|+|+|+|||||||+++.|+..++ +.+++.|.+.. +..... .. ....+...+..|..
T Consensus 5 ~~~g~~i~l~G~~GsGKSTl~~~l~~~~g--~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (175)
T 1knq_A 5 NHDHHIYVLMGVSGSGKSAVASEVAHQLH--AAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFAMQRTNKV 82 (175)
T ss_dssp CTTSEEEEEECSTTSCHHHHHHHHHHHHT--CEEEEGGGGCCHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHCSE
T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHHhhC--cEEEeCccccchHHHHHhhcCcCCCccccccHHHHHHHHHHHHHhcCCc
Confidence 34567999999999999999999998887 66688887632 211111 11 12334445567889
Q ss_pred EEEecCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhccCCCccCCccEE
Q 007244 81 VFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRI 160 (611)
Q Consensus 81 VIID~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~e~P~~~EgFd~V 160 (611)
+|+|.+.+....+..+ +..+..+.+|+|++|.+++.+|+.+|..+. ....++.++...++.|.+.+ ...+
T Consensus 83 ~vi~~~~~~~~~~~~l---~~~~~~~~vv~l~~~~e~~~~R~~~R~~~~------~~~~~~~~~~~~~~~~~~~~-~~~~ 152 (175)
T 1knq_A 83 SLIVCSALKKHYRDLL---REGNPNLSFIYLKGDFDVIESRLKARKGHF------FKTQMLVTQFETLQEPGADE-TDVL 152 (175)
T ss_dssp EEEECCCCSHHHHHHH---HTTCTTEEEEEEECCHHHHHHHHHTSTTCC------CCHHHHHHHHHHCCCCCTTC-TTEE
T ss_pred EEEEeCchHHHHHHHH---HhcCCCEEEEEEECCHHHHHHHHHhccCCC------CchHHHHHHHHhhhCcccCC-CCeE
Confidence 9999888777666555 333345678999999999999999997541 23566676666666552222 2344
Q ss_pred EEcCChhhHHHHHH
Q 007244 161 TLCQNENDVQAALD 174 (611)
Q Consensus 161 ~vv~~~~evd~av~ 174 (611)
++..+ ..++++..
T Consensus 153 ~Id~~-~~~~~~~~ 165 (175)
T 1knq_A 153 VVDID-QPLEGVVA 165 (175)
T ss_dssp EEECS-SCHHHHHH
T ss_pred EEeCC-CCHHHHHH
Confidence 44433 45555444
No 30
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=99.40 E-value=1.3e-12 Score=128.55 Aligned_cols=105 Identities=18% Similarity=0.365 Sum_probs=83.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeec-chhc------------------cCCCCcHHHHHHHHHHHHHCCCcEE
Q 007244 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQ-DTIN------------------KGKSGTKVQCLTSASSALKKGKSVF 82 (611)
Q Consensus 22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~-D~i~------------------~~~~~~~~~~~~~~~~~L~~Gk~VI 82 (611)
+|+|.|||||||+|+|+.|++.++ +.+|+. |.++ .|...+.+-+...+.++|.....+|
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g--~~~istGdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~lv~~~l~~~~~~i 79 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG--FVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALIEEVFPKHGNVI 79 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC--CEEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHCCSSSCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC--CeEEcHHHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHHHHHHhhccCCceE
Confidence 688999999999999999999999 667885 4443 2344444555678888888888899
Q ss_pred EecCCCCHHHHHHHHHh-CCCCCeE-EEEEEeCCHHHHHHHHHhcccc
Q 007244 83 LDRCNLEREQRTDFVKL-GGPEVDV-HAVVLDLPAKLCISRSVKRIEH 128 (611)
Q Consensus 83 ID~tnl~~~~R~~~~~l-~~~~~~v-~vV~Ld~p~e~~~~Rl~~R~~~ 128 (611)
+|+.+.+..+...+..+ ...+..+ .+|+|++|.+++.+|+..|..+
T Consensus 80 lDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~v~~e~l~~Rl~~R~~~ 127 (206)
T 3sr0_A 80 FDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGRRIN 127 (206)
T ss_dssp EESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEC
T ss_pred ecCCchhHHHHHHHHhhHHHhccccceeeecCCCHHHHHHHHhCCccc
Confidence 99999999998888766 4444433 6889999999999999999643
No 31
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=99.39 E-value=5.9e-12 Score=118.60 Aligned_cols=108 Identities=18% Similarity=0.260 Sum_probs=78.4
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhcc---CCC-----------------C-cHHHH----HHHHHH
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK---GKS-----------------G-TKVQC----LTSASS 73 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~---~~~-----------------~-~~~~~----~~~~~~ 73 (611)
++.+|+|+|+|||||||+++.|++.++.++.+++.|.+.. +.. . .+..+ ...+..
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSIGPEFRALEGAWAEGVVA 81 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHHSCGGGGTSTTSEEECTTSCEEECHHHHHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhhhcchhhccchhhccccCCCccccchhHHHHHHHHHHHHHH
Confidence 4578999999999999999999999987787777775521 100 0 01122 234566
Q ss_pred HHHCCCcEEEecCCCC-HHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccc
Q 007244 74 ALKKGKSVFLDRCNLE-REQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEH 128 (611)
Q Consensus 74 ~L~~Gk~VIID~tnl~-~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~ 128 (611)
.+..|.+||+|.+.+. ...+..++++ +.. .+.+|++++|.+++.+|+..|..+
T Consensus 82 ~~~~g~~vi~~~~~~~~~~~~~~~~~~~~~~--~~~~v~l~~~~e~l~~R~~~r~~~ 136 (178)
T 1qhx_A 82 MARAGARIIIDDVFLGGAAAQERWRSFVGDL--DVLWVGVRCDGAVAEGRETARGDR 136 (178)
T ss_dssp HHHTTCEEEEEECCTTTHHHHHHHHHHHTTC--CEEEEEEECCHHHHHHHHHHTSSS
T ss_pred HHhcCCeEEEEeccccChHHHHHHHHHhcCC--cEEEEEEECCHHHHHHHHHhhCCc
Confidence 6788899999997763 4556666665 543 356888999999999999999764
No 32
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=99.37 E-value=9e-12 Score=118.03 Aligned_cols=127 Identities=21% Similarity=0.378 Sum_probs=86.0
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhcc-------------------CCCCcHHHHHHHHHHHHH-
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK-------------------GKSGTKVQCLTSASSALK- 76 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~-------------------~~~~~~~~~~~~~~~~L~- 76 (611)
..++.+|+|+|+|||||||+++.|++.++ +.+++.|.+.. +...........+...+.
T Consensus 3 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l~--~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~~ 80 (194)
T 1qf9_A 3 KSKPNVVFVLGGPGSGKGTQCANIVRDFG--WVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTVKLLKNAIDA 80 (194)
T ss_dssp CCCCEEEEEEESTTSSHHHHHHHHHHHHC--CEEEEHHHHHHHHHHTTCTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCcCcEEEEECCCCCCHHHHHHHHHHHhC--CeEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHh
Confidence 35778999999999999999999999988 56687765521 111112222334444443
Q ss_pred -CCCcEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHh
Q 007244 77 -KGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQ 146 (611)
Q Consensus 77 -~Gk~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~ 146 (611)
.+..+|+|+++....++..+... ......-.+|+|++|.+++.+|+..|....+ +.....+.+..|+..
T Consensus 81 ~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~-r~~~~~~~~~~ri~~ 151 (194)
T 1qf9_A 81 NQGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGESSG-RSDDNIESIKKRFNT 151 (194)
T ss_dssp STTCCEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHTTSC-CTTCSHHHHHHHHHH
T ss_pred cCCCCEEEeCcCCCHHHHHHHHHHHhccCCCCEEEEEECCHHHHHHHHHhccccCC-CCCCCHHHHHHHHHH
Confidence 56789999988888888877766 4322233589999999999999999864211 222334555555544
No 33
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=99.36 E-value=1.2e-11 Score=119.63 Aligned_cols=146 Identities=21% Similarity=0.197 Sum_probs=98.3
Q ss_pred cCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhcc---------CCCCcHH------H-HHHHHHHHHHCCC
Q 007244 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK---------GKSGTKV------Q-CLTSASSALKKGK 79 (611)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~---------~~~~~~~------~-~~~~~~~~L~~Gk 79 (611)
...++.+|+|+|+|||||||+++.|+..++ +..++.|.+.. +...... . ....+...+..|.
T Consensus 25 ~~~~g~~i~l~G~~GsGKSTl~~~L~~~~g--~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~ 102 (200)
T 4eun_A 25 TGEPTRHVVVMGVSGSGKTTIAHGVADETG--LEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSLAEWMDARADAGV 102 (200)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHHC--CEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHHHhhC--CeEEcccccccHHHHHHHhcCCCCCCcccccHHHHHHHHHHHHHhcCC
Confidence 345678999999999999999999999887 56688877632 2111111 1 2244555667889
Q ss_pred cEEEecCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhccCCCccCCccE
Q 007244 80 SVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSR 159 (611)
Q Consensus 80 ~VIID~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~e~P~~~EgFd~ 159 (611)
.+|+|...+....|..+..+ ...+.+|+|++|.+++.+|+.+|..+. .+.+.+.+++..++++...+. .
T Consensus 103 ~viid~~~~~~~~~~~l~~~---~~~~~vv~l~~~~e~l~~Rl~~R~~~~------~~~~~l~~~~~~~~~~~~~~~--~ 171 (200)
T 4eun_A 103 STIITCSALKRTYRDVLREG---PPSVDFLHLDGPAEVIKGRMSKREGHF------MPASLLQSQLATLEALEPDES--G 171 (200)
T ss_dssp CEEEEECCCCHHHHHHHTTS---SSCCEEEEEECCHHHHHHHHTTCSCCS------SCGGGHHHHHHHCCCCCTTSC--E
T ss_pred CEEEEchhhhHHHHHHHHHh---CCceEEEEEeCCHHHHHHHHHhcccCC------CCHHHHHHHHHHhCCCCCCCC--e
Confidence 99999988887777766443 224568999999999999999997642 235677777777765543332 3
Q ss_pred EEEcCChhhHHHHHHH
Q 007244 160 ITLCQNENDVQAALDT 175 (611)
Q Consensus 160 V~vv~~~~evd~av~~ 175 (611)
+++.. ...+++++..
T Consensus 172 ~~Id~-~~~~~e~~~~ 186 (200)
T 4eun_A 172 IVLDL-RQPPEQLIER 186 (200)
T ss_dssp EEEET-TSCHHHHHHH
T ss_pred EEEEC-CCCHHHHHHH
Confidence 33333 2355555543
No 34
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=99.35 E-value=4.6e-12 Score=125.84 Aligned_cols=124 Identities=23% Similarity=0.326 Sum_probs=85.5
Q ss_pred ccCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeec-chhc------------------cCCCCcHHHHHHHHHHHH
Q 007244 15 EKKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ-DTIN------------------KGKSGTKVQCLTSASSAL 75 (611)
Q Consensus 15 ~~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~-D~i~------------------~~~~~~~~~~~~~~~~~L 75 (611)
+.-.+|.+|+|.|||||||+|+|+.|++.++ +.+|+. |.++ .|...+.+.+...+.++|
T Consensus 24 ~~~~k~kiI~llGpPGsGKgTqa~~L~~~~g--~~hIstGdllR~~i~~~t~lg~~~~~~~~~G~lVpde~~~~lv~~~l 101 (217)
T 3umf_A 24 QKLAKAKVIFVLGGPGSGKGTQCEKLVQKFH--FNHLSSGDLLRAEVQSGSPKGKELKAMMERGELVPLEVVLALLKEAM 101 (217)
T ss_dssp CCTTSCEEEEEECCTTCCHHHHHHHHHHHHC--CEEECHHHHHHHHHTTCCHHHHHHHHHHHHTCCCCHHHHHHHHHHHH
T ss_pred hhccCCcEEEEECCCCCCHHHHHHHHHHHHC--CceEcHHHHHHHHHHcCCchHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 4567789999999999999999999999998 677885 3343 133333343445555555
Q ss_pred H----CCCcEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHH
Q 007244 76 K----KGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRM 144 (611)
Q Consensus 76 ~----~Gk~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm 144 (611)
. ....+|+|+.+.+..+...+... .... .+|+|++|.+++.+|+..|....+ +.++.++.+.+|+
T Consensus 102 ~~~~~~~~g~ilDGfPRt~~Qa~~l~~~~~~~~---~vi~l~v~~e~~~~Rl~~R~~~~~-R~DD~~e~i~~Rl 171 (217)
T 3umf_A 102 IKLVDKNCHFLIDGYPRELDQGIKFEKEVCPCL---CVINFDVSEEVMRKRLLKRAETSN-RVDDNEETIVKRF 171 (217)
T ss_dssp HHHTTTCSEEEEETBCSSHHHHHHHHHHTCCCS---EEEEEECCHHHHHHHHSCC-------CHHHHHHHHHHH
T ss_pred hhccccccCcccccCCCcHHHHHHHHHhCCccC---EEEeccCCHHHHHHHHhcccccCC-CCCCCHHHHHHHH
Confidence 3 34569999999998888877665 4333 488999999999999999965321 2333444444443
No 35
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=99.35 E-value=9.6e-12 Score=118.03 Aligned_cols=107 Identities=19% Similarity=0.366 Sum_probs=75.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhcc--------------------CCCCcHHHH----HHHHHH-
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK--------------------GKSGTKVQC----LTSASS- 73 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~--------------------~~~~~~~~~----~~~~~~- 73 (611)
+|.+|+|+|+|||||||+|+.|++.++ +.+++.|.+.. +........ ...+..
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~--~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~ 79 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKYG--YTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQT 79 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHHC--CEEEEHHHHHHHHHHCTTSTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhC--CeEEeHHHHHHHHHhccCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHhh
Confidence 467999999999999999999999988 55688765521 111111111 112222
Q ss_pred --HHHCCCcEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244 74 --ALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (611)
Q Consensus 74 --~L~~Gk~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~ 127 (611)
.+..+..||+|+++....+++.|... ......-.+|+|++|.+++.+|+.+|..
T Consensus 80 ~~~~~~~~~vi~dg~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~ 136 (196)
T 1tev_A 80 MAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGK 136 (196)
T ss_dssp HHHCTTCCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHH
T ss_pred hccccCCCeEEEeCCCCCHHHHHHHHHHhcccCCCCEEEEEECCHHHHHHHHHcccc
Confidence 22357889999999998888888766 4332333688999999999999998864
No 36
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=99.31 E-value=9.2e-12 Score=124.89 Aligned_cols=109 Identities=24% Similarity=0.318 Sum_probs=81.5
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh-c------------------cCCCCcHHHHHHHHHHHHHC-
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-N------------------KGKSGTKVQCLTSASSALKK- 77 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i-~------------------~~~~~~~~~~~~~~~~~L~~- 77 (611)
.+|.+|+|+|+|||||||+|+.|++.++ +.+++.|.+ + .+...+...+...+...+..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g--~~~is~~~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~l~~~ 104 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHC--YCHLSTGDLLREAAEKKTELGLKIKNIINEGKLVDDQMVLSLVDEKLKTP 104 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHC--CEEEEHHHHHHHHTTSSSHHHHHHHHHHHTTCCCCHHHHHHHHHHHTTSG
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhC--CeEEecHHHHHHHHhccchHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcc
Confidence 5688999999999999999999999988 556776543 1 23333444444566666655
Q ss_pred --CCcEEEecCCCCHHHHHHHHHh-CCCCC-eEEEEEEeCCHHHHHHHHHhcccc
Q 007244 78 --GKSVFLDRCNLEREQRTDFVKL-GGPEV-DVHAVVLDLPAKLCISRSVKRIEH 128 (611)
Q Consensus 78 --Gk~VIID~tnl~~~~R~~~~~l-~~~~~-~v~vV~Ld~p~e~~~~Rl~~R~~~ 128 (611)
+..+|+|+.+....+...+..+ ...+. .-.+|+|++|.+++.+|+.+|..+
T Consensus 105 ~~~~~~ildg~p~~~~q~~~l~~~l~~~~~~~d~vi~l~~p~e~~~~Rl~~R~~~ 159 (243)
T 3tlx_A 105 QCKKGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEVLVNRISGRLIH 159 (243)
T ss_dssp GGSSEEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEE
T ss_pred cccCCEEecCCCCcHHHHHHHHHHHHHcCCCCceEEEEeCCHHHHHHHHHcCCCC
Confidence 6789999988888887777665 33333 236889999999999999999753
No 37
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=99.31 E-value=8.8e-12 Score=125.54 Aligned_cols=112 Identities=13% Similarity=0.160 Sum_probs=88.5
Q ss_pred cCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCC---------CCc---------HHH-HHHHHHHHHH
Q 007244 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGK---------SGT---------KVQ-CLTSASSALK 76 (611)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~---------~~~---------~~~-~~~~~~~~L~ 76 (611)
...+|.+|+|+|+|||||||+++.|++.++..+.+++.|.++... .+. ... +...+...+.
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~r~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 107 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSFRSQHPHYLELQQEYGKDSVEYTKDFAGKMVESLVTKLSS 107 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGGGTTSTTHHHHHTTCSSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHHHHhchhHHHHHHHcCchHHHHhhHHHHHHHHHHHHHHHh
Confidence 456689999999999999999999999987667788999885421 111 111 1234455667
Q ss_pred CCCcEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244 77 KGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (611)
Q Consensus 77 ~Gk~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~ 127 (611)
.|.++|||+++....++..+..+ +..++.+.++++++|.++|.+|+.+|..
T Consensus 108 ~g~~vVid~~~~~~~~~~~~~~~l~~~g~~v~lv~l~~~~e~~~~R~~~R~~ 159 (253)
T 2p5t_B 108 LGYNLLIEGTLRTVDVPKKTAQLLKNKGYEVQLALIATKPELSYLSTLIRYE 159 (253)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHHHHH
T ss_pred cCCCEEEeCCCCCHHHHHHHHHHHHHCCCcEEEEEEeCCHHHHHHHHHHHHH
Confidence 78899999998888888888888 7788888899999999999999988864
No 38
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=99.30 E-value=3.2e-12 Score=124.02 Aligned_cols=140 Identities=15% Similarity=0.204 Sum_probs=94.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCe-EEee--------------------cchh----ccCCCCcHHHH--------H
Q 007244 22 LVIMVGAPGSGKSTFCEHVMRSSARPW-ARIC--------------------QDTI----NKGKSGTKVQC--------L 68 (611)
Q Consensus 22 LIvLvG~PGSGKST~A~~L~~~~~~~~-~~Is--------------------~D~i----~~~~~~~~~~~--------~ 68 (611)
+|||+|||||||||++++|.+.++..+ ..++ .+.+ .++.+.++.++ .
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~~G~dY~Fvs~~eF~~~i~~g~flE~~~~~g~~YGt~~ 82 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGSTV 82 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCcCCceeEeecHHHHHHHHHcCCEEEEEEEcCceeeeec
Confidence 489999999999999999998865322 1121 1111 12333332211 1
Q ss_pred HHHHHHHHCCCcEEEecCCCCHHHHHHHHHh-CCCCC-eEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHh
Q 007244 69 TSASSALKKGKSVFLDRCNLEREQRTDFVKL-GGPEV-DVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQ 146 (611)
Q Consensus 69 ~~~~~~L~~Gk~VIID~tnl~~~~R~~~~~l-~~~~~-~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~ 146 (611)
..+...+..|+.+|+|. +++.+..+ +..+. .+.+++++++.+++.+|+..|++ +..+++-.|+.+
T Consensus 83 ~~v~~~l~~g~~vil~i------d~~g~~~~k~~~~~~~~~Ifi~pps~e~L~~RL~~Rg~-------e~~e~i~~Rl~~ 149 (186)
T 1ex7_A 83 ASVKQVSKSGKTCILDI------DMQGVKSVKAIPELNARFLFIAPPSVEDLKKRLEGRGT-------ETEESINKRLSA 149 (186)
T ss_dssp HHHHHHHHHTSEEEEEC------CHHHHHHHHTCGGGCCEEEEEECSCHHHHHHHHHHHCC-------SCHHHHHHHHHH
T ss_pred ceeeehhhCCCEEEecC------CHHHHHHHHHhcccCceEEEEeCCCHHHHHHHHHhcCC-------CCHHHHHHHHHH
Confidence 66788999999999999 78888877 55553 44556667789999999999987 466777788877
Q ss_pred hccCCCcc--CCccEEEEcCChhhHHHHHHHhc
Q 007244 147 KKELPKLS--EGFSRITLCQNENDVQAALDTYS 177 (611)
Q Consensus 147 ~~e~P~~~--EgFd~V~vv~~~~evd~av~~~~ 177 (611)
...+.... ..||+|++++ +++.+...+.
T Consensus 150 a~~e~~~~~~~~fD~vIvNd---dle~a~~~l~ 179 (186)
T 1ex7_A 150 AQAELAYAETGAHDKVIVND---DLDKAYKELK 179 (186)
T ss_dssp HHHHHHHHTTTCSSEEEECS---SHHHHHHHHH
T ss_pred HHHHHhhccccCCcEEEECc---CHHHHHHHHH
Confidence 65433322 3589998875 4555555443
No 39
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=99.29 E-value=1.8e-11 Score=115.53 Aligned_cols=126 Identities=10% Similarity=0.110 Sum_probs=81.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecc----hhc----cCC--CC---cH-HHHHHHHHHHHHC-CCcEEE
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQD----TIN----KGK--SG---TK-VQCLTSASSALKK-GKSVFL 83 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D----~i~----~~~--~~---~~-~~~~~~~~~~L~~-Gk~VII 83 (611)
++.+|+|+|+|||||||+|+.|++.++.+++ ++.| .++ .+. +. .+ ..+...+...+.. |..||+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i-~d~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~~l~~~g~~vi~ 82 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLPGSFV-FEPEEMGQALRKLTPGFSGDPQEHPMWIPLMLDALQYASREAAGPLIV 82 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHSTTCEE-CCTHHHHHHHHHTSTTCCSCGGGSTTHHHHHHHHHHHHHHHCSSCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCCEE-EchhhhHHHHHHhCccccchhhhhHHHHHHHHHHHHHHHHhCCCcEEE
Confidence 5679999999999999999999999886553 2321 121 111 11 11 1234555666665 788999
Q ss_pred ecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhccCC
Q 007244 84 DRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELP 151 (611)
Q Consensus 84 D~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~e~P 151 (611)
|.+......+..++.. +..+..+..|+|++|.+++.+|+..|..++ ...+.+.++...++.+
T Consensus 83 d~~~~~~~~~~~~~~~l~~~~~~~~~i~l~~~~e~~~~R~~~R~~r~------~~~~~~~~~~~~~~~~ 145 (183)
T 2vli_A 83 PVSISDTARHRRLMSGLKDRGLSVHHFTLIAPLNVVLERLRRDGQPQ------VNVGTVEDRLNELRGE 145 (183)
T ss_dssp EECCCCHHHHHHHHHHHHHTTCCCEEEEEECCHHHHHHHHHTC----------CCHHHHHHHHHHHTSG
T ss_pred eeeccCHHHHHHHHHHHHhcCCceEEEEEeCCHHHHHHHHHhccccc------hhHHHHHHHHHhhccc
Confidence 9988887777776666 555555567999999999999999987532 2346677777776655
No 40
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=99.29 E-value=5.8e-12 Score=119.82 Aligned_cols=108 Identities=16% Similarity=0.198 Sum_probs=77.5
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccC------CCC-cHH---------HHHHHHHHHHHCCCcE
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKG------KSG-TKV---------QCLTSASSALKKGKSV 81 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~------~~~-~~~---------~~~~~~~~~L~~Gk~V 81 (611)
.+|.+|+|+|+|||||||+++.|++.++. .+++.|.++.. ... .+. .+...+...+..|..|
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~--~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~v 80 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLRL--PLLSKDAFKEVMFDGLGWSDREWSRRVGATAIMMLYHTAATILQSGQSL 80 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHTC--CEEEHHHHHHHHHHHHCCCSHHHHHHHHHHHHHHHHHHHHHHHHTTCCE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCC--eEecHHHHHHHHHHhcCccchHHHHHhhHHHHHHHHHHHHHHHhCCCeE
Confidence 45789999999999999999999999884 45777777421 111 111 1113445667889999
Q ss_pred EEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244 82 FLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (611)
Q Consensus 82 IID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~ 127 (611)
|+|+++.....+..+..+ ...+....+|+|++|.+++.+|+.+|..
T Consensus 81 i~d~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~~~e~~~~R~~~R~~ 127 (193)
T 2rhm_A 81 IMESNFRVDLDTERMQNLHTIAPFTPIQIRCVASGDVLVERILSRIA 127 (193)
T ss_dssp EEEECCCHHHHHHHHHHHHHHSCCEEEEEEEECCHHHHHHHHHHHHH
T ss_pred EEecCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHHHHhcC
Confidence 999987322233455555 4455677899999999999999998874
No 41
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=99.27 E-value=3.5e-11 Score=114.72 Aligned_cols=104 Identities=25% Similarity=0.419 Sum_probs=75.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhc-------------------cCCCCcHHHHH----HHHHHHH
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN-------------------KGKSGTKVQCL----TSASSAL 75 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~-------------------~~~~~~~~~~~----~~~~~~L 75 (611)
++.+|+|+|+|||||||+++.|++.++ +.+++.|.+. ++......... ..+...+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~--~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~ 85 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYG--YTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPLETVLDMLRDAMVAKV 85 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHC--CEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhC--CeEEcHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhcc
Confidence 467899999999999999999999988 5567765542 12222222222 3344455
Q ss_pred HCCCcEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244 76 KKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (611)
Q Consensus 76 ~~Gk~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~ 127 (611)
..|..||+|+++....++..+... ...+ .+|+|++|.+++.+|+.+|..
T Consensus 86 ~~~~~vi~d~~~~~~~~~~~~~~~~~~~~---~vi~l~~~~e~~~~R~~~R~~ 135 (196)
T 2c95_A 86 NTSKGFLIDGYPREVQQGEEFERRIGQPT---LLLYVDAGPETMTQRLLKRGE 135 (196)
T ss_dssp TTCSCEEEESCCCSHHHHHHHHHHTCCCS---EEEEEECCHHHHHHHHHHHHT
T ss_pred ccCCcEEEeCCCCCHHHHHHHHHhcCCCC---EEEEEECCHHHHHHHHHccCC
Confidence 578899999988887777666544 3333 589999999999999998864
No 42
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=99.27 E-value=3.2e-11 Score=112.29 Aligned_cols=141 Identities=16% Similarity=0.129 Sum_probs=87.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHHHHHHHHHHCCCcEEEecCC--------------
Q 007244 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCN-------------- 87 (611)
Q Consensus 22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L~~Gk~VIID~tn-------------- 87 (611)
+|+|+|+|||||||+++.|++.++ +..++.|.+...... ....+ .....+..|..+|.|...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~--~~~i~~d~~~~~~~~-~~~~~-~~~~~l~~~~~vi~dr~~~~~~v~~~~~~~~~ 78 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK--YPIIKGSSFELAKSG-NEKLF-EHFNKLADEDNVIIDRFVYSNLVYAKKFKDYS 78 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC--CCEEECCCHHHHTTC-HHHHH-HHHHHHTTCCSEEEESCHHHHHHHTTTBTTCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--CeeecCcccccchhH-HHHHH-HHHHHHHhCCCeEEeeeecchHHHHHHHHHhh
Confidence 799999999999999999999988 445888776543321 12222 234567889999999522
Q ss_pred -CCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhccCCCccCCccEEEEcCCh
Q 007244 88 -LEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQNE 166 (611)
Q Consensus 88 -l~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~e~P~~~EgFd~V~vv~~~ 166 (611)
+....+..+... ...+..+|+|++|.+++.+|+.+|.++ ....+.+.++.+.++.+.....+..+++..+.
T Consensus 79 ~~~~~~~~~l~~~--~~~~~~~i~l~~~~e~~~~R~~~r~r~------~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~ 150 (173)
T 3kb2_A 79 ILTERQLRFIEDK--IKAKAKVVYLHADPSVIKKRLRVRGDE------YIEGKDIDSILELYREVMSNAGLHTYSWDTGQ 150 (173)
T ss_dssp CCCHHHHHHHHHH--HTTTEEEEEEECCHHHHHHHHHHHSCS------CCCHHHHHHHHHHHHHHHHTCSSCEEEEETTT
T ss_pred HhhHHHHHHHhcc--CCCCCEEEEEeCCHHHHHHHHHhcCCc------chhhhHHHHHHHHHHHHHhhcCCCEEEEECCC
Confidence 122222222222 112345899999999999999998542 22345666666666554443334455554432
Q ss_pred hhHHHHHH
Q 007244 167 NDVQAALD 174 (611)
Q Consensus 167 ~evd~av~ 174 (611)
..++++..
T Consensus 151 ~~~~ev~~ 158 (173)
T 3kb2_A 151 WSSDEIAK 158 (173)
T ss_dssp SCHHHHHH
T ss_pred CCHHHHHH
Confidence 34555444
No 43
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=99.27 E-value=3.1e-11 Score=111.76 Aligned_cols=116 Identities=20% Similarity=0.330 Sum_probs=80.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh-cc-----C----CCCc----------HHHHHHHHHHHH--HCC
Q 007244 21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-NK-----G----KSGT----------KVQCLTSASSAL--KKG 78 (611)
Q Consensus 21 ~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i-~~-----~----~~~~----------~~~~~~~~~~~L--~~G 78 (611)
.+|+|+|+|||||||+|+.| +.++ +.+++.|.+ +. + .... ...+...+...+ ..+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 78 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERG--AKVIVMSDVVRKRYSIEAKPGERLMDFAKRLREIYGDGVVARLCVEELGTSNH 78 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTT--CEEEEHHHHHHHHHHHHC---CCHHHHHHHHHHHHCTTHHHHHHHHHHCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCC--CcEEEHhHHHHHHHHhcCCChhHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCC
Confidence 47999999999999999999 8888 445665443 21 1 0000 001224455666 677
Q ss_pred CcEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHh
Q 007244 79 KSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQ 146 (611)
Q Consensus 79 k~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~ 146 (611)
..||+|+. ....++..+... . ....+|+|++|.+++.+|+..|.+.. .....+++..++..
T Consensus 79 ~~vi~dg~-~~~~~~~~l~~~~~---~~~~~i~l~~~~~~~~~R~~~R~~~~---~~~~~~~~~~r~~~ 140 (179)
T 3lw7_A 79 DLVVFDGV-RSLAEVEEFKRLLG---DSVYIVAVHSPPKIRYKRMIERLRSD---DSKEISELIRRDRE 140 (179)
T ss_dssp SCEEEECC-CCHHHHHHHHHHHC---SCEEEEEEECCHHHHHHHHHTCC-------CCCHHHHHHHHHH
T ss_pred CeEEEeCC-CCHHHHHHHHHHhC---CCcEEEEEECCHHHHHHHHHhccCCC---CcchHHHHHHHHHh
Confidence 88999997 888888877766 4 34579999999999999999997531 12456777777644
No 44
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=99.25 E-value=2.6e-11 Score=115.86 Aligned_cols=105 Identities=21% Similarity=0.392 Sum_probs=75.8
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhc-------------------cCCCCcHHHHH----HHHHHH
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN-------------------KGKSGTKVQCL----TSASSA 74 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~-------------------~~~~~~~~~~~----~~~~~~ 74 (611)
.++.+|+|+|+|||||||+|+.|++.++ +.+++.|.+. ++......... ..+...
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~--~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~ 87 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVEKYG--FTHLSTGELLREELASESERSKLIRDIMERGDLVPSGIVLELLKEAMVAS 87 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHHHHT--CEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhC--CeEEcHHHHHHHHHHhCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHhcc
Confidence 3567999999999999999999999988 5567765542 12222222222 233344
Q ss_pred HHCCCcEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244 75 LKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (611)
Q Consensus 75 L~~Gk~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~ 127 (611)
+..|..||+|+++....++..|... ...+ .+|+|++|.+++.+|+.+|..
T Consensus 88 ~~~~~~vi~dg~~~~~~~~~~l~~~~~~~~---~~i~l~~~~~~~~~R~~~R~~ 138 (199)
T 2bwj_A 88 LGDTRGFLIDGYPREVKQGEEFGRRIGDPQ---LVICMDCSADTMTNRLLQMSR 138 (199)
T ss_dssp TTSCSCEEEETCCSSHHHHHHHHHHTCCCS---EEEEEECCHHHHHHHHHHTCC
T ss_pred cccCccEEEeCCCCCHHHHHHHHHhcCCCC---EEEEEECCHHHHHHHHHcCCC
Confidence 4568899999988888877766543 2222 488999999999999999865
No 45
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=99.25 E-value=1.8e-11 Score=119.25 Aligned_cols=103 Identities=17% Similarity=0.235 Sum_probs=76.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhc-------------------cCCCCcHHHHHHHHHHHHHC---CC
Q 007244 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN-------------------KGKSGTKVQCLTSASSALKK---GK 79 (611)
Q Consensus 22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~-------------------~~~~~~~~~~~~~~~~~L~~---Gk 79 (611)
.|+|+|+|||||||+|+.|++.++ +.+++.|.+. .+...........+...+.. +.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~--~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~ 79 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYG--IPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIVKERLGKDDCER 79 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS--CCEEEHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHTSGGGTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--CcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcccccC
Confidence 488999999999999999999998 4457764441 22333444444556666654 78
Q ss_pred cEEEecCCCCHHHHHHHHHh-CCCCCeE-EEEEEeCCHHHHHHHHHhcc
Q 007244 80 SVFLDRCNLEREQRTDFVKL-GGPEVDV-HAVVLDLPAKLCISRSVKRI 126 (611)
Q Consensus 80 ~VIID~tnl~~~~R~~~~~l-~~~~~~v-~vV~Ld~p~e~~~~Rl~~R~ 126 (611)
.+|+|+++....++..+..+ ...+..+ .+|+|++|.+++.+|+.+|.
T Consensus 80 ~~ildg~p~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~ 128 (216)
T 3dl0_A 80 GFLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVDKDVLMERLTGRR 128 (216)
T ss_dssp CEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCGGGHHHHHHTEE
T ss_pred CEEEeCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHCCC
Confidence 89999988888888777766 4344333 58899999999999999994
No 46
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=99.25 E-value=3.1e-11 Score=116.52 Aligned_cols=111 Identities=15% Similarity=0.198 Sum_probs=77.3
Q ss_pred ccCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh-cc------------------CCCCcHHHHHHHHHHHH
Q 007244 15 EKKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-NK------------------GKSGTKVQCLTSASSAL 75 (611)
Q Consensus 15 ~~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i-~~------------------~~~~~~~~~~~~~~~~L 75 (611)
....+|.+|+|+|+|||||||+|+.|++.++.+ +++.|.+ +. +...........+.+.+
T Consensus 15 ~~~~~~~~I~l~G~~GsGKST~a~~La~~l~~~--~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~ 92 (201)
T 2cdn_A 15 VPRGSHMRVLLLGPPGAGKGTQAVKLAEKLGIP--QISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTNELVDDRL 92 (201)
T ss_dssp -CCCSCCEEEEECCTTSSHHHHHHHHHHHHTCC--EEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred cCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCc--EEehhHHHHHHHHcCChHHHHHHHHHHcCCcccHHHHHHHHHHHH
Confidence 356678899999999999999999999998844 4776544 21 12222222223333333
Q ss_pred ---HCCCcEEEecCCCCHHHHHHHHHh-CCCCC-eEEEEEEeCCHHHHHHHHHhccc
Q 007244 76 ---KKGKSVFLDRCNLEREQRTDFVKL-GGPEV-DVHAVVLDLPAKLCISRSVKRIE 127 (611)
Q Consensus 76 ---~~Gk~VIID~tnl~~~~R~~~~~l-~~~~~-~v~vV~Ld~p~e~~~~Rl~~R~~ 127 (611)
..+..||+|+++.+..++..+..+ ...+. ...+|+|++|.+++.+|+.+|.+
T Consensus 93 ~~~~~~~~vIldg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~r 149 (201)
T 2cdn_A 93 NNPDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGRGR 149 (201)
T ss_dssp TSGGGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHHCC
T ss_pred hcccCCCeEEEECCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCC
Confidence 346789999988888777766655 43332 23689999999999999999853
No 47
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=99.24 E-value=2.2e-11 Score=118.50 Aligned_cols=103 Identities=17% Similarity=0.232 Sum_probs=76.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhc-------------------cCCCCcHHHHHHHHHHHHHC---CC
Q 007244 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN-------------------KGKSGTKVQCLTSASSALKK---GK 79 (611)
Q Consensus 22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~-------------------~~~~~~~~~~~~~~~~~L~~---Gk 79 (611)
.|+|+|+|||||||+|+.|++.++ +.+++.|.+. .+...........+.+.+.. +.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~--~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~ 79 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE--IPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVPDEVTIGIVHERLSKDDCQK 79 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC--CCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTSGGGTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--CcEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcccCCC
Confidence 488999999999999999999998 4457765442 12233333344556666654 77
Q ss_pred cEEEecCCCCHHHHHHHHHh-CCCCCeE-EEEEEeCCHHHHHHHHHhcc
Q 007244 80 SVFLDRCNLEREQRTDFVKL-GGPEVDV-HAVVLDLPAKLCISRSVKRI 126 (611)
Q Consensus 80 ~VIID~tnl~~~~R~~~~~l-~~~~~~v-~vV~Ld~p~e~~~~Rl~~R~ 126 (611)
.+|+|+++....++..+..+ ...+..+ .+|+|++|.+++.+|+.+|.
T Consensus 80 ~~ildg~p~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~ 128 (216)
T 3fb4_A 80 GFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELMKRLTGRW 128 (216)
T ss_dssp CEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHSEE
T ss_pred cEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCC
Confidence 89999988888888777665 4344333 58999999999999999994
No 48
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=99.23 E-value=5.6e-11 Score=116.45 Aligned_cols=107 Identities=17% Similarity=0.252 Sum_probs=75.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh-c------------------cCCCCcHHHHHHHHHHHHH---
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-N------------------KGKSGTKVQCLTSASSALK--- 76 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i-~------------------~~~~~~~~~~~~~~~~~L~--- 76 (611)
++.+|+|+|+|||||||+|+.|++.++ +.+++.|.+ + .+...........+...+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~--~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~ 80 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFH--AAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTNNP 80 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC--CEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHCG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC--ceEEehhHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHhcc
Confidence 456899999999999999999999998 556776544 2 1222223333445555554
Q ss_pred -CCCcEEEecCCCCHHHHHHHHHh-CCCCCeE-EEEEEeCCHHHHHHHHHhccc
Q 007244 77 -KGKSVFLDRCNLEREQRTDFVKL-GGPEVDV-HAVVLDLPAKLCISRSVKRIE 127 (611)
Q Consensus 77 -~Gk~VIID~tnl~~~~R~~~~~l-~~~~~~v-~vV~Ld~p~e~~~~Rl~~R~~ 127 (611)
.|..+|+|+.+....++..+..+ ...+..+ .+|+|++|.+++.+|+..|..
T Consensus 81 ~~~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~R~~~r~~ 134 (220)
T 1aky_A 81 ACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITGRLI 134 (220)
T ss_dssp GGGSCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEEE
T ss_pred ccCCCeEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhCCCc
Confidence 46789999977777666655444 3333223 589999999999999998864
No 49
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=99.22 E-value=7e-11 Score=115.92 Aligned_cols=107 Identities=21% Similarity=0.266 Sum_probs=74.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhcc-------------------CCCCcHHHHHHHHHHHHHC---
Q 007244 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK-------------------GKSGTKVQCLTSASSALKK--- 77 (611)
Q Consensus 20 p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~-------------------~~~~~~~~~~~~~~~~L~~--- 77 (611)
+..|+|+|+|||||||+|+.|++.++ +.+++.|.+.. +.....+.....+..+|..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~--~~~i~~d~li~~~~~~~t~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~~ 82 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYG--LAHLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGDEIVLGLVKEKFDLGVC 82 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHC--CEEEEHHHHHHHHHHTC--CCHHHHHHHHHTCCCCHHHHHHHHHHHHHTTTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC--ceEEehhHHHHHHHHcCCHHHHHHHHHHHCCCcCCHHHHHHHHHHHHhcccc
Confidence 45799999999999999999999998 56677755421 1112222233455555554
Q ss_pred CCcEEEecCCCCHHHHHHHHHh-CCCCC-eEEEEEEeCCHHHHHHHHHhcccc
Q 007244 78 GKSVFLDRCNLEREQRTDFVKL-GGPEV-DVHAVVLDLPAKLCISRSVKRIEH 128 (611)
Q Consensus 78 Gk~VIID~tnl~~~~R~~~~~l-~~~~~-~v~vV~Ld~p~e~~~~Rl~~R~~~ 128 (611)
|..||+|+.+....+...+..+ ...+. .-.+|+|++|.+++.+|+..|..+
T Consensus 83 ~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~~~ 135 (217)
T 3be4_A 83 VNGFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYFEIDDSEIIERISGRCTH 135 (217)
T ss_dssp TTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEEEC
T ss_pred CCCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCC
Confidence 7889999987776666555433 22222 236899999999999999998753
No 50
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=99.21 E-value=2.1e-10 Score=110.55 Aligned_cols=106 Identities=17% Similarity=0.331 Sum_probs=74.8
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhc------c--------------CCCCcHH----HHHHHHH
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN------K--------------GKSGTKV----QCLTSAS 72 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~------~--------------~~~~~~~----~~~~~~~ 72 (611)
...+.+|+|+|+|||||||+++.|++.++ +.+++.|.+. . +...... .+...+.
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~g--~~~i~~d~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~ 89 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVKDYS--FVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALLRNAIS 89 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHHHSS--CEEEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHcC--ceEEeHHHHHHHHHhccCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHH
Confidence 45578999999999999999999999988 5667766541 1 1111111 1224445
Q ss_pred HHHHCC-CcEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244 73 SALKKG-KSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (611)
Q Consensus 73 ~~L~~G-k~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~ 127 (611)
..+..| ..+|+|+.+.....+..+... ...+ .+|+|++|.+++.+|+.+|..
T Consensus 90 ~~l~~g~~~~i~dg~~~~~~~~~~~~~~~~~~~---~~i~l~~~~e~~~~Rl~~R~~ 143 (203)
T 1ukz_A 90 DNVKANKHKFLIDGFPRKMDQAISFERDIVESK---FILFFDCPEDIMLERLLERGK 143 (203)
T ss_dssp HHHHTTCCEEEEETCCCSHHHHHHHHHHTCCCS---EEEEEECCHHHHHHHHHHHHH
T ss_pred hhhccCCCeEEEeCCCCCHHHHHHHHHhcCCCC---EEEEEECCHHHHHHHHHhccc
Confidence 566777 579999987776666544433 3322 488999999999999998864
No 51
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=99.21 E-value=5.2e-11 Score=112.87 Aligned_cols=104 Identities=19% Similarity=0.293 Sum_probs=74.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhc-------------------cCCCCcHHHHHHHHHHHHHCCC
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN-------------------KGKSGTKVQCLTSASSALKKGK 79 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~-------------------~~~~~~~~~~~~~~~~~L~~Gk 79 (611)
++.+|+|+|+|||||||+++.|++.++ +.+++.|.+. ++...........+...+..+
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l~--~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~l~~~- 79 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQELG--FKKLSTGDILRDHVARGTPLGERVRPIMERGDLVPDDLILELIREELAER- 79 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHHT--CEEECHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHCCSE-
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC--CeEecHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHhcCC-
Confidence 467899999999999999999999888 5668776432 112222223334455555544
Q ss_pred cEEEecCCCCHHHHHHHHHh-CCCCC-eEEEEEEeCCHHHHHHHHHhcc
Q 007244 80 SVFLDRCNLEREQRTDFVKL-GGPEV-DVHAVVLDLPAKLCISRSVKRI 126 (611)
Q Consensus 80 ~VIID~tnl~~~~R~~~~~l-~~~~~-~v~vV~Ld~p~e~~~~Rl~~R~ 126 (611)
+|+|+++....++..+..+ ...+. .-.+|+|++|.+++.+|+..|.
T Consensus 80 -~i~dg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~ 127 (186)
T 3cm0_A 80 -VIFDGFPRTLAQAEALDRLLSETGTRLLGVVLVEVPEEELVRRILRRA 127 (186)
T ss_dssp -EEEESCCCSHHHHHHHHHHHHHTTEEEEEEEEEECCHHHHHHHHHHHH
T ss_pred -EEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcc
Confidence 9999988887776665554 44443 3368999999999999999885
No 52
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=99.20 E-value=3.1e-11 Score=117.15 Aligned_cols=142 Identities=15% Similarity=0.171 Sum_probs=86.7
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHcCC---------------------CeEEeecchhc----cCCCCcHH-------
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSSAR---------------------PWARICQDTIN----KGKSGTKV------- 65 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~---------------------~~~~Is~D~i~----~~~~~~~~------- 65 (611)
.++.+|+|+|+|||||||+++.|++.++. .+..++.|.+. .+.+..+.
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKLKEGQFLEFDKYANNFY 89 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHHHHcCCCEEeHHhCCCee
Confidence 45678999999999999999999988742 22233333332 12221110
Q ss_pred -HHHHHHHHHHHCCCcEEEecCCCCHHHHHHHHHh-CCCC-CeEEEEEEe-CCHHHHHHHHHhcccccCCCCCCCHHHHH
Q 007244 66 -QCLTSASSALKKGKSVFLDRCNLEREQRTDFVKL-GGPE-VDVHAVVLD-LPAKLCISRSVKRIEHEGNLQGGKAAAVV 141 (611)
Q Consensus 66 -~~~~~~~~~L~~Gk~VIID~tnl~~~~R~~~~~l-~~~~-~~v~vV~Ld-~p~e~~~~Rl~~R~~~~g~~~~~vpeevi 141 (611)
.....+...+..|+.||+|.. ...+..+ ...+ ..+.+||++ +|.+++.+|+.+|.. ..++.+.
T Consensus 90 ~~~~~~i~~~l~~g~~vi~d~~------~~~~~~l~~~~~~~~~~~i~l~~~s~e~l~~Rl~~R~~-------~~~~~i~ 156 (204)
T 2qor_A 90 GTLKSEYDLAVGEGKICLFEMN------INGVKQLKESKHIQDGIYIFVKPPSIDILLGRLKNRNT-------EKPEEIN 156 (204)
T ss_dssp EEEHHHHHHHHHTTCEEEEECC------HHHHHHHHHCSSCSCCEEEEEECSCHHHHHHHHHTCTT-------SCHHHHH
T ss_pred cCCHHHHHHHHHcCCeEEEEEC------HHHHHHHHHhcCCCCeEEEEEcCCCHHHHHHHHHHcCC-------CCHHHHH
Confidence 001356678889999999972 2233333 2222 134678887 899999999998865 3445555
Q ss_pred HHHHhhccCCC--ccCCccEEEEcCChhhHHHHHHH
Q 007244 142 NRMLQKKELPK--LSEGFSRITLCQNENDVQAALDT 175 (611)
Q Consensus 142 ~rm~~~~e~P~--~~EgFd~V~vv~~~~evd~av~~ 175 (611)
.++.....+.. ..+.|+.++++. ++++++..
T Consensus 157 ~rl~~~~~~~~~~~~~~~d~vi~n~---~~e~~~~~ 189 (204)
T 2qor_A 157 KRMQELTREMDEADKVGFNYFIVND---DLARTYAE 189 (204)
T ss_dssp HHHHHHHHHHHHHHHHTCSEEEECS---SHHHHHHH
T ss_pred HHHHHHHHHHHHhhhccCcEEEECc---CHHHHHHH
Confidence 56665432221 345677776553 44444443
No 53
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=99.18 E-value=1.5e-10 Score=128.84 Aligned_cols=130 Identities=16% Similarity=0.240 Sum_probs=88.6
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEeecchhccC---C------CC---cH-----HHH----HHHHH
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINKG---K------SG---TK-----VQC----LTSAS 72 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~---~~~~~Is~D~i~~~---~------~~---~~-----~~~----~~~~~ 72 (611)
..+|.+|+|+|+|||||||+|++|++.++ ....+++.|.++.. . +. .. ..+ +..+.
T Consensus 32 ~~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~~~~~~~~~~f~~~~~~~~~~re~~~~~~l~~~~ 111 (520)
T 2axn_A 32 TNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQYSSYNFFRPDNEEAMKVRKQCALAALRDVK 111 (520)
T ss_dssp -CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHSCCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHhccCCccccccCcccHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999998874 34556787776421 0 11 11 111 22333
Q ss_pred HHH--HCCCcEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCC-HHHHHHHHHhcccccCCCCCCCHHHHHHHHHh
Q 007244 73 SAL--KKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLP-AKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQ 146 (611)
Q Consensus 73 ~~L--~~Gk~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p-~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~ 146 (611)
..| ..|..||+|+||.....|..++.+ +..++.+.++++.++ .+++.+|+..|......+.+..++++++.+.+
T Consensus 112 ~~L~~~~g~~VIvDat~~~~~~R~~~~~~a~~~g~~v~~l~~~~~d~e~i~~ri~~r~~~rPdl~~~d~e~~~~~~~~ 189 (520)
T 2axn_A 112 SYLAKEGGQIAVFDATNTTRERRHMILHFAKENDFKAFFIESVCDDPTVVASNIMEVKISSPDYKDCNSAEAMDDFMK 189 (520)
T ss_dssp HHHHHSCCCEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHHHHHTTTSGGGTTSCHHHHHHHHHH
T ss_pred HHHHhcCCceEEecCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCChHHHHHHHHHhhhhcCCccccCCHHHHHHHHHH
Confidence 444 568899999999999999999988 777877888888887 56666777666542111222356666655543
No 54
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=99.16 E-value=2.2e-10 Score=112.98 Aligned_cols=104 Identities=18% Similarity=0.176 Sum_probs=75.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh-cc------------------CCCCcHHHHHHHHHHHHHC--CCc
Q 007244 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-NK------------------GKSGTKVQCLTSASSALKK--GKS 80 (611)
Q Consensus 22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i-~~------------------~~~~~~~~~~~~~~~~L~~--Gk~ 80 (611)
+|+|+|+|||||||+++.|++.++ +.+++.|.+ +. +.......+...+..+|.. |..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg--~~~i~~dd~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~g~~ 79 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS--LAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDITIPMVLETLESKGKDG 79 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT--CEEEEHHHHHHHHTTTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHCTTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--CeEEchHHHHHHHHHcCCHHHHHHHHHHHcCCcCcHHHHHHHHHHHHhcccCCe
Confidence 689999999999999999999988 556776554 21 1222233344667777777 999
Q ss_pred EEEecCCCCHHHHHHHHHh-CCCCC-eEEEEEEeCCHHHHHHHHHhccc
Q 007244 81 VFLDRCNLEREQRTDFVKL-GGPEV-DVHAVVLDLPAKLCISRSVKRIE 127 (611)
Q Consensus 81 VIID~tnl~~~~R~~~~~l-~~~~~-~v~vV~Ld~p~e~~~~Rl~~R~~ 127 (611)
||+|+.+....++..+..+ ...+. .-.+|+|++|.+++.+|+..|..
T Consensus 80 vIlDg~~~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~ 128 (223)
T 2xb4_A 80 WLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAKNRIMGRRI 128 (223)
T ss_dssp EEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTBCE
T ss_pred EEEeCCcCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcccC
Confidence 9999977776666655443 22222 23589999999999999999964
No 55
>3q71_A Poly [ADP-ribose] polymerase 14; structural genomics, structural genomics consortium, SGC, transferase, PARP14 macro 2; HET: AR6; 2.20A {Homo sapiens}
Probab=99.16 E-value=1.4e-11 Score=122.50 Aligned_cols=112 Identities=13% Similarity=0.119 Sum_probs=85.2
Q ss_pred CCchhhhhhHHHHHHhhcCCCCCCCCCCCCCCCCCCcccccccccccccceeecccccccccccCCCCcchhhhcccCCC
Q 007244 194 NPDAKIQLGIMKFLKKVDAPSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGEEVKGTENPEVASVNQNGSS 273 (611)
Q Consensus 194 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 273 (611)
......++.|++.++++........|++ . .|.++++.|.++-|.+.|.|..+.....+.+...-.+|+.+|.+
T Consensus 74 AI~~aaG~~L~~ec~~~~~~~~~~~G~a-----~--iT~g~~Lp~k~VIHtVgP~~~~~~~~~~~~L~~~y~~~L~~A~e 146 (221)
T 3q71_A 74 SLLEKAGPELQEELDTVGQGVAVSMGTV-----L--KTSSWNLDCRYVLHVVAPEWRNGSTSSLKIMEDIIRECMEITES 146 (221)
T ss_dssp HHHHHHCTHHHHHHHHHHHTSCCCTTCE-----E--EEECTTSSSSEEEEECCCCCTTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHhccCCCCCCeE-----E--EEcCCCCCCCEEEEeCCCCCcCCCchHHHHHHHHHHHHHHHHHH
Confidence 3445567788888877653222222332 1 46788899999999999999763322223444455668899999
Q ss_pred CCCCccccccCccCCCCCChHHHHHHHHHHHHHHHHhcC
Q 007244 274 SDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLG 312 (611)
Q Consensus 274 ~~~~SiAfPaIStGi~gfP~~~aa~Iiv~tv~~f~~~~~ 312 (611)
++++|||||+||||+||||.++||+|++++|.+|+++++
T Consensus 147 ~~i~SIAfPaIsTG~~G~P~~~aA~i~~~~v~~fl~~~~ 185 (221)
T 3q71_A 147 LSLKSIAFPAIGTGNLGFPKNIFAELIISEVFKFSSKNQ 185 (221)
T ss_dssp TTCCEEEEECTTSSTTCCCHHHHHHHHHHHHHHHHHHCC
T ss_pred hCCceEeeccccCCCCCCCHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999873
No 56
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=99.13 E-value=1.9e-11 Score=119.42 Aligned_cols=144 Identities=16% Similarity=0.206 Sum_probs=84.6
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCe---------------------EEeecchhc----cCCCCcHHH------
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPW---------------------ARICQDTIN----KGKSGTKVQ------ 66 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~---------------------~~Is~D~i~----~~~~~~~~~------ 66 (611)
+++.+|+|+||+||||||+++.|+..++..+ ..++.+.+. .+.+..+..
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~~~~~~le~~~~~~~~y 85 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAIKDGKMLEYAEYVGNYY 85 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHHhcCcEEEEEEEccccC
Confidence 4578999999999999999999998775311 111211111 011111100
Q ss_pred --HHHHHHHHHHCCCcEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHH
Q 007244 67 --CLTSASSALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNR 143 (611)
Q Consensus 67 --~~~~~~~~L~~Gk~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~r 143 (611)
....+.+.+..|+.+|+|. ++.....+ ......+.+++++++.+++.+|+.+|.. +.++++..|
T Consensus 86 g~~~~~i~~~l~~g~~vild~------~~~g~~~~~~~~~~~~~i~i~~ps~~~l~~Rl~~R~~-------~~~e~i~~R 152 (208)
T 3tau_A 86 GTPLEYVEEKLAAGVDIFLEI------EVQGAMQVRKAMPEGIFIFLTPPDLSELKNRIIGRGT-------ESMEVVEER 152 (208)
T ss_dssp EEEHHHHHHHHHTTCCEEEEC------CHHHHHHHHHHCTTSEEEEEECTTTTTSSCC--------------CCHHHHHH
T ss_pred CCcHHHHHHHHHcCCeEEEEe------eHHHHHHHHHhCCCeEEEEEeCCCHHHHHHHHHhcCC-------CCHHHHHHH
Confidence 0145678899999999998 55555555 4444444454555668999999999976 345667777
Q ss_pred HHhhccCCCccCCccEEEEcCChhhHHHHHHHhc
Q 007244 144 MLQKKELPKLSEGFSRITLCQNENDVQAALDTYS 177 (611)
Q Consensus 144 m~~~~e~P~~~EgFd~V~vv~~~~evd~av~~~~ 177 (611)
+.....+-.....||.++++++ ++++...+.
T Consensus 153 l~~~~~e~~~~~~~d~vivN~~---~~~~~~~l~ 183 (208)
T 3tau_A 153 METAKKEIEMMASYDYAVVNDV---VANAVQKIK 183 (208)
T ss_dssp HHHHHHHHHHGGGSSEEEECSS---HHHHHHHHH
T ss_pred HHHHHHHHHhhccCCEEEECcC---HHHHHHHHH
Confidence 7665533333456888887753 555555444
No 57
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=99.07 E-value=6.4e-10 Score=109.03 Aligned_cols=106 Identities=25% Similarity=0.304 Sum_probs=70.3
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhc-------------------cCCCCcHHHHHHHHHHHHH--
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN-------------------KGKSGTKVQCLTSASSALK-- 76 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~-------------------~~~~~~~~~~~~~~~~~L~-- 76 (611)
.++.+|+|+|+|||||||+++.|++.++ +.+++.|.+. ++.......+...+...+.
T Consensus 3 ~~~~~I~l~G~~GsGKsT~~~~La~~l~--~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~~~ 80 (222)
T 1zak_A 3 ADPLKVMISGAPASGKGTQCELIKTKYQ--LAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVNMVKERLRQP 80 (222)
T ss_dssp CCSCCEEEEESTTSSHHHHHHHHHHHHC--CEECCHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHSH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC--CceecHHHHHHHHHHcCCchhHHHHHHHHcCCcCCHHHHHHHHHHHHhhc
Confidence 3456899999999999999999999998 5567765431 1223333333333333332
Q ss_pred --CCCcEEEecCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244 77 --KGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (611)
Q Consensus 77 --~Gk~VIID~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~ 127 (611)
.+..+|+|++.....++..+... ....-.+|+|++|.+++.+|+..|..
T Consensus 81 ~~~~~~~vidg~~~~~~~~~~l~~~--~~~~~~vi~L~~~~~~~~~R~~~r~~ 131 (222)
T 1zak_A 81 DAQENGWLLDGYPRSYSQAMALETL--EIRPDTFILLDVPDELLVERVVGRRL 131 (222)
T ss_dssp HHHHTCEEEESCCCSHHHHHHHHTT--TCCCSEEEEEECCHHHHHHHHTTEEE
T ss_pred cccCCcEEEECCCCCHHHHHHHHHc--CCCCCEEEEEECCHHHHHHHHHcCCc
Confidence 24568889977666555444222 11122589999999999999998864
No 58
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=99.06 E-value=1.3e-09 Score=109.08 Aligned_cols=102 Identities=21% Similarity=0.259 Sum_probs=76.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh-c------------------cCCCCcHHHHHHHHHHHHHC---CC
Q 007244 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-N------------------KGKSGTKVQCLTSASSALKK---GK 79 (611)
Q Consensus 22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i-~------------------~~~~~~~~~~~~~~~~~L~~---Gk 79 (611)
-+.|.|+|||||||+|+.|++.++ +.+|+.+++ + .+...+.+.+...+.++|.. +.
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g--~~~is~gdllR~~~~~~t~lG~~i~~~~~~G~lvpdei~~~ll~~~l~~~~~~~ 87 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFG--IPQISTGDMLRAAVKAGTPLGVEAKTYMDEGKLVPDSLIIGLVKERLKEADCAN 87 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT--CCEECHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHSGGGTT
T ss_pred ceeeECCCCCCHHHHHHHHHHHhC--CCeeechHHHHHhccCCChHHHHHHHHHhhccccccHHHHHHHHHHHhCcccCC
Confidence 478999999999999999999998 455876433 2 23333444455777777765 35
Q ss_pred cEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccc
Q 007244 80 SVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEH 128 (611)
Q Consensus 80 ~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~ 128 (611)
.+|+|+.+.+..+...+... ... -.+|+|++|.+++.+|+..|..+
T Consensus 88 g~ILDGfPRt~~Qa~~L~~~~~~~---d~VI~Ldvp~e~l~~Rl~~R~~~ 134 (230)
T 3gmt_A 88 GYLFDGFPRTIAQADAMKEAGVAI---DYVLEIDVPFSEIIERMSGRRTH 134 (230)
T ss_dssp CEEEESCCCSHHHHHHHHHTTCCC---SEEEEECCCHHHHHHHHHTEEEE
T ss_pred CeEecCCCCcHHHHHHHHHhCCCc---cEEEEEeCCHHHHHHHHHcCCcc
Confidence 79999988888777766443 222 24899999999999999999764
No 59
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=99.05 E-value=1.4e-09 Score=106.03 Aligned_cols=102 Identities=22% Similarity=0.281 Sum_probs=70.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh-cc------------------CCCCcHHHHHHHHHHHHHCC---C
Q 007244 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-NK------------------GKSGTKVQCLTSASSALKKG---K 79 (611)
Q Consensus 22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i-~~------------------~~~~~~~~~~~~~~~~L~~G---k 79 (611)
.|+|+|+|||||||+++.|++.++. .+++.|.+ +. +.......+...+...+..+ .
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~--~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~~~~ 79 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGI--PQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRN 79 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCC--CEEEHHHHHHHHHHHTCTTTGGGHHHHHHTCCCCHHHHHHHHHHHHTSGGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC--eEEeHHHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccccCC
Confidence 4899999999999999999999884 45776443 21 11222333445566666553 5
Q ss_pred cEEEecCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244 80 SVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (611)
Q Consensus 80 ~VIID~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~ 127 (611)
.+|+|+++....+...+... .. ..-.+|+|++|.+++.+|+..|..
T Consensus 80 ~~i~dg~~~~~~~~~~l~~~-~~-~~d~vi~l~~~~e~~~~R~~~R~~ 125 (214)
T 1e4v_A 80 GFLLDGFPRTIPQADAMKEA-GI-NVDYVLEFDVPDELIVDRIVGRRV 125 (214)
T ss_dssp CEEEESCCCSHHHHHHHHHT-TC-CCSEEEEEECCHHHHHHHHHTEEE
T ss_pred CEEEeCCCCCHHHHHHHHhc-CC-CCCEEEEEECCHHHHHHHHHCCcc
Confidence 79999977666555544332 11 122589999999999999998864
No 60
>3q6z_A Poly [ADP-ribose] polymerase 14; structural genomics consortium, SGC, ADP-ribose binding, TRA; HET: APR; 2.23A {Homo sapiens}
Probab=99.03 E-value=6.5e-11 Score=117.26 Aligned_cols=111 Identities=8% Similarity=-0.048 Sum_probs=81.5
Q ss_pred CCchhhhhhHHHHHHhhcC-CCCCCCCCCCCCCCCCCcccccccccccccceeecccccccc-cccCCCCcchhhhcccC
Q 007244 194 NPDAKIQLGIMKFLKKVDA-PSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGE-EVKGTENPEVASVNQNG 271 (611)
Q Consensus 194 ~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~ 271 (611)
......++.|++.++++-. ......|++ . .|.++++.|.++-|.+-|.|..+.. ...+.+...-.+|+..|
T Consensus 71 AI~~aaG~~l~~ec~~~~~~~g~~~~G~a-----~--iT~~~~L~~k~VIH~VgP~~~~~~~~~~~~~L~~~y~~~L~~A 143 (214)
T 3q6z_A 71 ALSKAAGPELQADCDQIVKREGRLLPGNA-----T--ISKAGKLPYHHVIHAVGPRWSGYEAPRCVYLLRRAVQLSLCLA 143 (214)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCCCTTCE-----E--EEECTTSSSSEEEEEECCCCCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHcCCCCCCeE-----E--EEcCCCCCCCEEEEecCCcccCCCcchHHHHHHHHHHHHHHHH
Confidence 4445557777777666521 011111322 1 3667889999999999999976321 11233444556788999
Q ss_pred CCCCCCccccccCccCCCCCChHHHHHHHHHHHHHHHHhc
Q 007244 272 SSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKL 311 (611)
Q Consensus 272 ~~~~~~SiAfPaIStGi~gfP~~~aa~Iiv~tv~~f~~~~ 311 (611)
.+++++|||||+||||+||||.++||+|++++|++|++++
T Consensus 144 ~~~~i~SIAfP~IstG~~g~P~~~aA~i~~~av~~fl~~~ 183 (214)
T 3q6z_A 144 EKYKYRSIAIPAISSGVFGFPLGRCVETIVSAIKENFQFK 183 (214)
T ss_dssp HHTTCSEEEECCTTSSTTCCCHHHHHHHHHHHHHHHTSSC
T ss_pred HHcCCcEEEECcccCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999876
No 61
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=99.02 E-value=6.4e-10 Score=107.42 Aligned_cols=103 Identities=13% Similarity=0.104 Sum_probs=66.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCC----c---------HHHHHHHHHHHHHCCCcEEEec
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG----T---------KVQCLTSASSALKKGKSVFLDR 85 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~----~---------~~~~~~~~~~~L~~Gk~VIID~ 85 (611)
+..+|+|+|+|||||||+++.|++.++..+ ++.|.+.....+ . .......+...+..+..+||+.
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~~~~--i~~d~~~~~~~g~~i~~~~~~~~~~~~~~~e~~~l~~l~~~~~~vi~~ 101 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLNVPF--IDLDWYIEERFHKTVGELFTERGEAGFRELERNMLHEVAEFENVVIST 101 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHTCCE--EEHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEEEEC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCCE--EcchHHHHHHhCCcHHHHHHhcChHHHHHHHHHHHHHHhhcCCcEEEC
Confidence 346899999999999999999999998544 777766321111 0 0111233444555677888884
Q ss_pred C---CCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHH-hccccc
Q 007244 86 C---NLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSV-KRIEHE 129 (611)
Q Consensus 86 t---nl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~-~R~~~~ 129 (611)
. ......+..+. .. ..+|||++|.+++.+|+. .|..++
T Consensus 102 ggg~~~~~~~~~~l~---~~---~~vi~L~~~~e~l~~Rl~~~~~~Rp 143 (199)
T 3vaa_A 102 GGGAPCFYDNMEFMN---RT---GKTVFLNVHPDVLFRRLRIAKQQRP 143 (199)
T ss_dssp CTTGGGSTTHHHHHH---HH---SEEEEEECCHHHHHHHHHHTGGGCG
T ss_pred CCcEEccHHHHHHHH---cC---CEEEEEECCHHHHHHHHhcCCCCCC
Confidence 3 33333333331 11 248999999999999998 554443
No 62
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.02 E-value=5e-10 Score=106.08 Aligned_cols=145 Identities=23% Similarity=0.336 Sum_probs=107.6
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhcc------CCCCc----HHHHHHHHHHHHHCCCcEEEecCC
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK------GKSGT----KVQCLTSASSALKKGKSVFLDRCN 87 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~------~~~~~----~~~~~~~~~~~L~~Gk~VIID~tn 87 (611)
+++.++.|+|++|||||||++.+... ...++.|.++. +.... +..+...+...+..|..+++|.++
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~~~~~~----~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 82 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAKKHFKP----TEVISSDFCRGLMSDDENDQTVTGAAFDVLHYIVSKRLQLGKLTVVDATN 82 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHHHHSCG----GGEEEHHHHHHHHCSSTTCGGGHHHHHHHHHHHHHHHHHTTCCEEEESCC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHccC----CeEEccHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHhCCCeEEEECCC
Confidence 45789999999999999999986532 23366665531 11111 122334556677889999999999
Q ss_pred CCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhccCC--C-ccCCccEEEEc
Q 007244 88 LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELP--K-LSEGFSRITLC 163 (611)
Q Consensus 88 l~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~e~P--~-~~EgFd~V~vv 163 (611)
.....++.++.+ +.......+++||-|...|-.|+..|..+ .++++++.++...+... . ..+|+..|++.
T Consensus 83 ~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~------~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vt 156 (171)
T 4gp7_A 83 VQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDR------QVEEYVIRKHTQQMKKSIKGLQREGFRYVYIL 156 (171)
T ss_dssp CSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSC------CCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEE
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCC------CCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEe
Confidence 998888888888 77778888999999999999999999864 57889998887764322 2 25689888888
Q ss_pred CChhhHHHH
Q 007244 164 QNENDVQAA 172 (611)
Q Consensus 164 ~~~~evd~a 172 (611)
++.++++.+
T Consensus 157 H~~~~~~~~ 165 (171)
T 4gp7_A 157 NSPEEVEEV 165 (171)
T ss_dssp CSHHHHHHE
T ss_pred CCHHHhhhh
Confidence 887776643
No 63
>1spv_A Putative polyprotein/phosphatase; structural genomoics, alpha/beta monomeric protein, structural genomics, PSI, protein structure initiative; HET: MES; 2.00A {Escherichia coli} SCOP: c.50.1.2
Probab=99.02 E-value=8.2e-11 Score=113.96 Aligned_cols=112 Identities=11% Similarity=0.119 Sum_probs=80.2
Q ss_pred CchhhhhhHHHHHHhhcCC-CCCCCCCCCCCCCCCCcccccccccccccceeecccccccccccCCCCcchhhhcccCCC
Q 007244 195 PDAKIQLGIMKFLKKVDAP-SNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGEEVKGTENPEVASVNQNGSS 273 (611)
Q Consensus 195 ~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 273 (611)
.....++.+.+-++++-.. .....|++ . .|.+.++.|.++-|.+.|.|..+.....+.+...-.+|+..+.+
T Consensus 38 I~~aaG~~l~~e~~~~~~~~g~~~~G~a-----~--iT~~~~L~~k~VIH~vgP~~~~~~~~~~~~L~~~y~~~L~~a~~ 110 (184)
T 1spv_A 38 IHRAAGPALLDACLKVRQQQGDCPTGHA-----V--ITLAGDLPAKAVVHTVGPVWRGGEQNEDQLLQDAYLNSLRLVAA 110 (184)
T ss_dssp HHHHHCHHHHHHHHHHHHHHCSCCTTCE-----E--EECCTTSSSSEEEEECCCCCSSSSSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHhcCCCCCCCE-----E--EeeCCCCCCCEEEEEcCCcccCCCcchHHHHHHHHHHHHHHHHH
Confidence 3344456676666655210 11111222 1 35667888999999999988653222223334455678899999
Q ss_pred CCCCccccccCccCCCCCChHHHHHHHHHHHHHHHHhcCC
Q 007244 274 SDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGN 313 (611)
Q Consensus 274 ~~~~SiAfPaIStGi~gfP~~~aa~Iiv~tv~~f~~~~~~ 313 (611)
++++|||||+||||+||||.++||+|+++++++|+++++.
T Consensus 111 ~~~~SIAfP~IstG~~g~p~~~aa~i~~~~v~~~l~~~~~ 150 (184)
T 1spv_A 111 NSYTSVAFPAISTGVYGYPRAAAAEIAVKTVSEFITRHAL 150 (184)
T ss_dssp TTCSEEEECCTTSSTTCCCHHHHHHHHHHHHHHHHHHCCS
T ss_pred hCCceEEeccccCCCCCCCHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999999998654
No 64
>2xd7_A Core histone macro-H2A.2; chromosomal protein, nucleosome core, chromatin regulator, nucleus, DNA-binding protein, phosphoprotein; 2.09A {Homo sapiens}
Probab=99.01 E-value=1.5e-10 Score=113.04 Aligned_cols=110 Identities=6% Similarity=0.071 Sum_probs=81.1
Q ss_pred CCchhhhhhHHHHHHhhcCC-CCCCCCCCCCCCCCCCcccccccccccccceeecccccccccccCCCCcchhhhcccCC
Q 007244 194 NPDAKIQLGIMKFLKKVDAP-SNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGEEVKGTENPEVASVNQNGS 272 (611)
Q Consensus 194 ~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 272 (611)
......++.+.+-++++... .....|++ . .|.+.++.|.++-|.+.|.|.. ....+.+...-.+|+..+.
T Consensus 56 aI~~aaG~~l~~ec~~~~~~~g~~~~G~a-----~--iT~~~~L~~k~VIH~vgP~~~~--~~~~~~L~~~y~~~L~~a~ 126 (193)
T 2xd7_A 56 ALEKAGGKEFLETVKELRKSQGPLEVAEA-----A--VSQSSGLAAKFVIHCHIPQWGS--DKCEEQLEETIKNCLSAAE 126 (193)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSCCTTCE-----E--EEECTTSSSSEEEEEECCCTTS--TTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHcCCCCCCCe-----E--EeeCCCCCCCEEEEECCCcCCC--cchHHHHHHHHHHHHHHHH
Confidence 34455567777777665221 11111222 1 3667788899999999999864 3223334445567889999
Q ss_pred CCCCCccccccCccCCCCCChHHHHHHHHHHHHHHHHhcC
Q 007244 273 SSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLG 312 (611)
Q Consensus 273 ~~~~~SiAfPaIStGi~gfP~~~aa~Iiv~tv~~f~~~~~ 312 (611)
+++++|||||+||||+||||.++||+++++++++|+++++
T Consensus 127 ~~~~~SIAfP~IstG~~g~p~~~aa~i~~~~v~~~l~~~~ 166 (193)
T 2xd7_A 127 DKKLKSVAFPPFPSGRNCFPKQTAAQVTLKAISAHFDDSS 166 (193)
T ss_dssp HTTCSEEEECCCCCSTTCCCHHHHHHHHHHHHHHHHHHCS
T ss_pred HcCCCEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999998753
No 65
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=99.00 E-value=2e-09 Score=106.65 Aligned_cols=110 Identities=19% Similarity=0.249 Sum_probs=75.0
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhc-------------------cCCCCcHHHHHHHHHHHHHC
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN-------------------KGKSGTKVQCLTSASSALKK 77 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~-------------------~~~~~~~~~~~~~~~~~L~~ 77 (611)
...+..|+|+|+|||||||+|+.|++.++ +.+++.|.+. .+.....+.....+..++..
T Consensus 13 ~~~~~~I~l~G~~GsGKsT~a~~La~~l~--~~~i~~d~li~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~ 90 (233)
T 1ak2_A 13 SPKGVRAVLLGPPGAGKGTQAPKLAKNFC--VCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVLELIEKNLET 90 (233)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHHHT--CEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHTS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhC--CceecHHHHHHHHHHcCChhHHHHHHHHHCCCcCCHHHHHHHHHHHHhc
Confidence 44557899999999999999999999998 5567765431 11222222233445555543
Q ss_pred ---CCcEEEecCCCCHHHHHHHHHh-CCCC-CeEEEEEEeCCHHHHHHHHHhcccc
Q 007244 78 ---GKSVFLDRCNLEREQRTDFVKL-GGPE-VDVHAVVLDLPAKLCISRSVKRIEH 128 (611)
Q Consensus 78 ---Gk~VIID~tnl~~~~R~~~~~l-~~~~-~~v~vV~Ld~p~e~~~~Rl~~R~~~ 128 (611)
+..+|+|+.+.+..++..+..+ ...+ ..-.+|+|++|.+++.+|+..|..+
T Consensus 91 ~~~~~g~ildg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~~~ 146 (233)
T 1ak2_A 91 PPCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRLIH 146 (233)
T ss_dssp GGGTTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTCEEC
T ss_pred ccccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCcC
Confidence 4579999977777666655443 2211 2235899999999999999999654
No 66
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=99.00 E-value=4.5e-10 Score=107.47 Aligned_cols=140 Identities=16% Similarity=0.234 Sum_probs=62.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCC---------------------eEEeecchhc----cCCCCcHHH--------
Q 007244 20 QILVIMVGAPGSGKSTFCEHVMRSSARP---------------------WARICQDTIN----KGKSGTKVQ-------- 66 (611)
Q Consensus 20 p~LIvLvG~PGSGKST~A~~L~~~~~~~---------------------~~~Is~D~i~----~~~~~~~~~-------- 66 (611)
+.+++|+||+||||||+++.|...+... +..++.+.+. .+.+..+..
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ge~~g~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~yg~ 80 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGS 80 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEECCCEEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccceEEeeccccCCCCCccCCeeeeecCHHHHHHHHhhcceeeEEEEeceeccC
Confidence 3578999999999999999998765311 1111111110 111110000
Q ss_pred HHHHHHHHHHCCCcEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCH-HHHHHHHHhcccccCCCCCCCHHHHHHHH
Q 007244 67 CLTSASSALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPA-KLCISRSVKRIEHEGNLQGGKAAAVVNRM 144 (611)
Q Consensus 67 ~~~~~~~~L~~Gk~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~-e~~~~Rl~~R~~~~g~~~~~vpeevi~rm 144 (611)
-...+.+.+..|+.+|+|. +.+....+ ...+....+||+.+|. +++.+|+.+|.+ +.++.+..|+
T Consensus 81 ~~~~i~~~l~~g~~~il~~------~~~g~~~l~~~~~~~~~~i~i~~p~~~~l~~Rl~~Rg~-------~~~~~i~~rl 147 (186)
T 3a00_A 81 TVASVKQVSKSGKTCILDI------DMQGVKSVKAIPELNARFLFIAPPSVEDLKKRLEGRGT-------ETEESINKRL 147 (186)
T ss_dssp EHHHHHHHHHTTCEEEEEC------CHHHHHHHHTCGGGCCEEEEEECSCC-----------------------------
T ss_pred cHHHHHHHHHcCCeEEEEE------cHHHHHHHHHhcCCCeEEEEEECcCHHHHHHHHHhcCC-------CCHHHHHHHH
Confidence 0146778889999999997 34444444 3133444567777755 999999999976 3444555566
Q ss_pred HhhccCCCcc--CCccEEEEcCChhhHHHHHHH
Q 007244 145 LQKKELPKLS--EGFSRITLCQNENDVQAALDT 175 (611)
Q Consensus 145 ~~~~e~P~~~--EgFd~V~vv~~~~evd~av~~ 175 (611)
.....+.... ..||.|++++ +++.+..+
T Consensus 148 ~~~~~~~~~~~~~~~d~vi~nd---~~~~a~~~ 177 (186)
T 3a00_A 148 SAAQAELAYAETGAHDKVIVND---DLDKAYKE 177 (186)
T ss_dssp -----------CCCCSEEEECS---SHHHHHHH
T ss_pred HHHHHHHHhhcccCCcEEEECc---CHHHHHHH
Confidence 6655443333 5688887775 34444443
No 67
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=98.99 E-value=3e-09 Score=101.24 Aligned_cols=107 Identities=19% Similarity=0.157 Sum_probs=76.7
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEeecchhccCCC-----CcHH--HHH----HHHHHHHHCCCcEEE
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINKGKS-----GTKV--QCL----TSASSALKKGKSVFL 83 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~---~~~~~Is~D~i~~~~~-----~~~~--~~~----~~~~~~L~~Gk~VII 83 (611)
.++.+|+|+|+|||||||+++.|++.++ ..+..++.|.++.... ...+ ..+ ..+...+..|..||+
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~g~~vi~ 90 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWARTTVSEGAGFTREERLRHLKRIAWIARLLARNGVIVIC 90 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHTTTTTTCCCCHHHHHHHHHHHHHHHHHHHTTTCEEEE
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 4578999999999999999999988764 3355678787754321 1111 111 122333567778889
Q ss_pred ecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHh
Q 007244 84 DRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVK 124 (611)
Q Consensus 84 D~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~ 124 (611)
|+++.....|..+..+ ...+.+..+|||++|.+++.+|+..
T Consensus 91 d~~~~~~~~r~~~~~~~~~~~~~~~~v~L~~~~e~~~~R~~~ 132 (186)
T 2yvu_A 91 SFVSPYKQARNMVRRIVEEEGIPFLEIYVKASLEEVIRRDPK 132 (186)
T ss_dssp ECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCHH
T ss_pred eCccccHHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHhhhh
Confidence 9988887778777776 5555667899999999999999753
No 68
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=98.99 E-value=3e-09 Score=104.70 Aligned_cols=105 Identities=20% Similarity=0.205 Sum_probs=71.7
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhc-------------------cCCCCcHHHHHHHHHHHHHC-
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN-------------------KGKSGTKVQCLTSASSALKK- 77 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~-------------------~~~~~~~~~~~~~~~~~L~~- 77 (611)
.++.+|+|+|+|||||||+++.|++.++ +.+++.|.+. .+...........+...+..
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~--~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~l~~~ 82 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHFE--LKHLSSGDLLRDNMLRGTEIGVLAKAFIDQGKLIPDDVMTRLALHELKNL 82 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHSS--SEEEEHHHHHHHHHHHTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTC
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHcC--CeEEechHHHHHhhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHhcc
Confidence 3457899999999999999999999988 5567765431 12222333333445555653
Q ss_pred -CCcEEEecCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244 78 -GKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (611)
Q Consensus 78 -Gk~VIID~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~ 127 (611)
+..+|+|+.+....+...+..+...+ .+|+|++|.+++.+|+..|..
T Consensus 83 ~~~~~vid~~~~~~~~~~~l~~~~~~~---~vi~L~~~~~~~~~R~~~R~~ 130 (227)
T 1zd8_A 83 TQYSWLLDGFPRTLPQAEALDRAYQID---TVINLNVPFEVIKQRLTARWI 130 (227)
T ss_dssp TTSCEEEESCCCSHHHHHHHHTTSCCC---EEEEEECCHHHHHHHHTCEEE
T ss_pred cCCCEEEeCCCCCHHHHHHHHHhcCCC---EEEEEECCHHHHHHHHHcCcC
Confidence 67899999777655544333222222 489999999999999998853
No 69
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.99 E-value=3.4e-09 Score=101.69 Aligned_cols=132 Identities=17% Similarity=0.201 Sum_probs=78.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhc--------cC--CC-CcHH---HH-----------------
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN--------KG--KS-GTKV---QC----------------- 67 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~--------~~--~~-~~~~---~~----------------- 67 (611)
++.+|.|+||+||||||+++.|...++ .+.++...+. .+ .. .... ..
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKALA--EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEHATIYERHY 83 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSS--SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEEEETTEEE
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC--CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEeeeeeecccc
Confidence 457899999999999999999988764 2223221110 00 00 0000 00
Q ss_pred ---HHHHHHHHHCCCcEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHH
Q 007244 68 ---LTSASSALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNR 143 (611)
Q Consensus 68 ---~~~~~~~L~~Gk~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~r 143 (611)
...+.+.+..|..+|+|. .+..+..+ ........++++++|.+++.+|+.+|... ..+.+..|
T Consensus 84 ~~~~~~i~~~l~~g~~vi~d~------~~~~~~~~~~~~~~~~~v~~~~~~~e~l~~Rl~~R~~~-------~~~~i~~r 150 (205)
T 3tr0_A 84 GTEKDWVLRQLKAGRDVLLEI------DWQGARQIRELFPPALSIFILPPSIEALRERLIKRRQD-------DTAIIEQR 150 (205)
T ss_dssp EEEHHHHHHHHHTTCEEEEEC------CHHHHHHHHHHCTTCEEEEEECSCHHHHHHHHHTCTTS-------CSSTHHHH
T ss_pred cchHHHHHHHHHcCCeEEEEE------CHHHHHHHHHhCCCcEEEEEECcCHHHHHHHHHHhCCC-------CHHHHHHH
Confidence 135677889999999997 34444444 33333334445566799999999999762 23344455
Q ss_pred HHhhccCCCccCCccEEEEcCC
Q 007244 144 MLQKKELPKLSEGFSRITLCQN 165 (611)
Q Consensus 144 m~~~~e~P~~~EgFd~V~vv~~ 165 (611)
+..+.........||.|+++++
T Consensus 151 l~~~~~~~~~~~~~d~vi~n~~ 172 (205)
T 3tr0_A 151 LALAREEMAHYKEFDYLVVNDN 172 (205)
T ss_dssp HHHHHHHHTTGGGCSEEEECSS
T ss_pred HHHHHHHHhcccCCCEEEECCC
Confidence 5554333333456788877653
No 70
>1yd9_A Core histone macro-H2A.1; alpha-beta structure, A1PP domain, macro-domain, structural protein; 1.60A {Rattus norvegicus} SCOP: c.50.1.2 PDB: 1zr3_A* 2fxk_A 3iid_A* 3iif_A* 1zr5_A
Probab=98.98 E-value=1.6e-10 Score=112.83 Aligned_cols=120 Identities=9% Similarity=0.092 Sum_probs=85.0
Q ss_pred CCchhhhhhHHHHHHhhcCC-CCCCCCCCCCCCCCCCcccccccccccccceeecccccccccccCCCCcchhhhcccCC
Q 007244 194 NPDAKIQLGIMKFLKKVDAP-SNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGEEVKGTENPEVASVNQNGS 272 (611)
Q Consensus 194 ~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 272 (611)
......++.+.+-++++... .....|++ . .|.+.++.|.++-|.+.|.|.. ....+.+...-.+|+..+.
T Consensus 53 aI~~aaG~~l~~ec~~~~~~~g~~~~G~a-----~--iT~~~~L~~k~VIH~vgP~~~~--~~~~~~L~~~y~~~L~~a~ 123 (193)
T 1yd9_A 53 TLEKKGGKEFVEAVLELRKKNGPLEVAGA-----A--VSAGHGLPAKFVIHCNSPVWGS--DKCEELLEKTVKNCLALAD 123 (193)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSCCTTCE-----E--EEECTTSSSSEEEEECCCCTTS--TTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHcCCCCCCCE-----E--EecCCCCCCCEEEEeCCCCcCC--cchHHHHHHHHHHHHHHHH
Confidence 34455567777777654221 11111222 1 3667788999999999999864 3223334445667889999
Q ss_pred CCCCCccccccCccCCCCCChHHHHHHHHHHHHHHHHhcC--Ce-EEEEeecC
Q 007244 273 SSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLG--NA-RLVLVDLT 322 (611)
Q Consensus 273 ~~~~~SiAfPaIStGi~gfP~~~aa~Iiv~tv~~f~~~~~--~i-~iV~vd~s 322 (611)
+++++|||||+||||+||||.++||+++++++++|+++++ .+ +++++.++
T Consensus 124 ~~~~~SIAfP~IstG~~g~p~~~aa~i~~~~v~~~l~~~~~~~l~~V~fv~~~ 176 (193)
T 1yd9_A 124 DRKLKSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVSTMSSSIKTVYFVLFD 176 (193)
T ss_dssp HTTCSEEEECCCSBSTTCBCHHHHHHHHHHHHHHHHTTCTTCCCCEEEEECCS
T ss_pred HhCCceEeecccccCCCCCCHHHHHHHHHHHHHHHHHhcCCCCcCEEEEEECC
Confidence 9999999999999999999999999999999999998743 23 45554333
No 71
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=98.96 E-value=1.3e-09 Score=103.24 Aligned_cols=146 Identities=10% Similarity=0.108 Sum_probs=81.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCC----cH---------HHHHHHHHHHHHCCCcEEEec
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG----TK---------VQCLTSASSALKKGKSVFLDR 85 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~----~~---------~~~~~~~~~~L~~Gk~VIID~ 85 (611)
++.+|+|+|+|||||||+++.|++.++.. +++.|.+.....+ .. ......+...+.....+||+.
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l~~~--~i~~d~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~vi~~ 81 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLTKRI--LYDSDKEIEKRTGADIAWIFEMEGEAGFRRREREMIEALCKLDNIILAT 81 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHHCCC--EEEHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCEEEC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCC--EEEChHHHHHHcCCChhhHHHHhCHHHHHHHHHHHHHHHHhcCCcEEec
Confidence 35689999999999999999999999844 5887777432111 00 011123333444444555554
Q ss_pred ---CCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHH--HhcccccCCCCCCCHHHHHHHHHhhccCCCccCCccEE
Q 007244 86 ---CNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRS--VKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRI 160 (611)
Q Consensus 86 ---tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl--~~R~~~~g~~~~~vpeevi~rm~~~~e~P~~~EgFd~V 160 (611)
..+....+..+.. .+ .+|||++|.+++.+|+ ..|..++. .....+.+.+..++...++ .+.+..+ +
T Consensus 82 gg~~~~~~~~~~~l~~---~~---~vi~L~~~~e~l~~Rl~~~~~~~rp~-~~~~~~~~~l~~~~~~r~~-~y~~~ad-~ 152 (185)
T 3trf_A 82 GGGVVLDEKNRQQISE---TG---VVIYLTASIDTQLKRIGQKGEMRRPL-FIKNNSKEKLQQLNEIRKP-LYQAMAD-L 152 (185)
T ss_dssp CTTGGGSHHHHHHHHH---HE---EEEEEECCHHHHHHHHHCCTTCSSCC-CCCHHHHHHHHHHHHHHHH-HHHHHCS-E
T ss_pred CCceecCHHHHHHHHh---CC---cEEEEECCHHHHHHHHhhcCCCCCCC-CCCCCHHHHHHHHHHHHHH-HHhhcCC-E
Confidence 3455555544422 12 5899999999999999 55443321 1111124556665555432 2222133 4
Q ss_pred EEcCChhhHHHHHHH
Q 007244 161 TLCQNENDVQAALDT 175 (611)
Q Consensus 161 ~vv~~~~evd~av~~ 175 (611)
++..+...+++++..
T Consensus 153 ~Idt~~~~~~e~~~~ 167 (185)
T 3trf_A 153 VYPTDDLNPRQLATQ 167 (185)
T ss_dssp EEECTTCCHHHHHHH
T ss_pred EEECCCCCHHHHHHH
Confidence 444333345555443
No 72
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=98.94 E-value=2e-09 Score=101.96 Aligned_cols=119 Identities=19% Similarity=0.201 Sum_probs=71.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCc-------------HHHHH-HHHHHHHHCCCcEEEec
Q 007244 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGT-------------KVQCL-TSASSALKKGKSVFLDR 85 (611)
Q Consensus 20 p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~-------------~~~~~-~~~~~~L~~Gk~VIID~ 85 (611)
+.+|+|+|+|||||||+|+.|++.++.+ +++.|.+.....+. ..... ..+...+.....||.++
T Consensus 2 ~~~I~l~G~~GsGKsT~a~~La~~lg~~--~id~D~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~vi~~g 79 (184)
T 2iyv_A 2 APKAVLVGLPGSGKSTIGRRLAKALGVG--LLDTDVAIEQRTGRSIADIFATDGEQEFRRIEEDVVRAALADHDGVLSLG 79 (184)
T ss_dssp CCSEEEECSTTSSHHHHHHHHHHHHTCC--EEEHHHHHHHHHSSCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCSEEECC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCC--EEeCchHHHHHcCCCHHHHHHHhChHHHHHHHHHHHHHHHhcCCeEEecC
Confidence 3469999999999999999999999844 58888764211110 00111 22333334333444433
Q ss_pred C--CCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhc
Q 007244 86 C--NLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKK 148 (611)
Q Consensus 86 t--nl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~ 148 (611)
. .+....|..+ + .+ .+|+|++|.+++.+|+.+|..++. .......+.+..++..+
T Consensus 80 ~~~v~~~~~~~~l---~-~~---~vV~L~~~~e~~~~Rl~~r~~r~~-~~~~~~~~~i~~~~~~r 136 (184)
T 2iyv_A 80 GGAVTSPGVRAAL---A-GH---TVVYLEISAAEGVRRTGGNTVRPL-LAGPDRAEKYRALMAKR 136 (184)
T ss_dssp TTGGGSHHHHHHH---T-TS---CEEEEECCHHHHHHHTTCCCCCSS-TTSCCHHHHHHHHHHHH
T ss_pred CcEEcCHHHHHHH---c-CC---eEEEEeCCHHHHHHHHhCCCCCCC-ccCCCHHHHHHHHHHHH
Confidence 2 2333444333 3 33 388999999999999998865321 11233556666665543
No 73
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=98.94 E-value=7.9e-09 Score=97.83 Aligned_cols=120 Identities=17% Similarity=0.163 Sum_probs=71.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchh-------------ccCCCCcHH-----------HHHHHHHHH
Q 007244 22 LVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTI-------------NKGKSGTKV-----------QCLTSASSA 74 (611)
Q Consensus 22 LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D~i-------------~~~~~~~~~-----------~~~~~~~~~ 74 (611)
+|+|+|+|||||||+++.|++.+ +..+ ++.|.. .++...... .+...+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~--i~~d~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~l~~~i~~~ 79 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFV--SLYREPGGTKVGEVLREILLTEELDERTELLLFEASRSKLIEEKIIPD 79 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCE--EEEESSCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeE--EEEeCCCCCchHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999999999999987 6444 444321 122221110 011234456
Q ss_pred HHCCCcEEEecC------------CCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHH
Q 007244 75 LKKGKSVFLDRC------------NLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVV 141 (611)
Q Consensus 75 L~~Gk~VIID~t------------nl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi 141 (611)
+..|..||+|.. .........+..+ ......-.+|+|++|.+++.+|+.+|... + ..+..
T Consensus 80 l~~~~~vi~dr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r~~~------~-~~~~~ 152 (195)
T 2pbr_A 80 LKRDKVVILDRFVLSTIAYQGYGKGLDVEFIKNLNEFATRGVKPDITLLLDIPVDIALRRLKEKNRF------E-NKEFL 152 (195)
T ss_dssp HHTTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTTTCC------C-CHHHH
T ss_pred HhCCCEEEECcchhHHHHHccccCCCCHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHhhccCcc------c-hHHHH
Confidence 788999999952 2222222222222 21112235899999999999999865431 2 45566
Q ss_pred HHHHhhccC
Q 007244 142 NRMLQKKEL 150 (611)
Q Consensus 142 ~rm~~~~e~ 150 (611)
.++...++.
T Consensus 153 ~~~~~~~~~ 161 (195)
T 2pbr_A 153 EKVRKGFLE 161 (195)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666555443
No 74
>4abl_A Poly [ADP-ribose] polymerase 14; transferase, PARP14; 1.15A {Homo sapiens} PDB: 4abk_A
Probab=98.94 E-value=3.5e-10 Score=109.48 Aligned_cols=99 Identities=14% Similarity=0.158 Sum_probs=77.8
Q ss_pred CCchhhhhhHHHHHHhhcCCCCCCCCCCCCCCCCCCcccccccccccccceeecccccccccccCCCCcchhhhcccCCC
Q 007244 194 NPDAKIQLGIMKFLKKVDAPSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGEEVKGTENPEVASVNQNGSS 273 (611)
Q Consensus 194 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 273 (611)
......++.|.+-++++..- . .+++ . .|.+.++.|.++-|.+.|.+ +...-.+|+..+.+
T Consensus 56 aI~~aaG~~l~~ec~~~~~~-~--~G~a-----~--iT~~~~L~~k~VIH~vgP~~----------L~~~y~~~L~~a~~ 115 (183)
T 4abl_A 56 AILECAGQNVERECSQQAQQ-R--KNDY-----I--ITGGGFLRCKNIIHVIGGND----------VKSSVSSVLQECEK 115 (183)
T ss_dssp HHHHHHCHHHHHHHHHHHHH-S--CCSE-----E--EEECTTSBSSEEEEEETTSC----------HHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHhcCC-C--CCce-----E--EecCCCCCCCEEEEeCcHHH----------HHHHHHHHHHHHHH
Confidence 45566678888888776421 1 1222 1 36778899999999887643 33455568899999
Q ss_pred CCCCccccccCccCCCCCChHHHHHHHHHHHHHHHHhcC
Q 007244 274 SDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLG 312 (611)
Q Consensus 274 ~~~~SiAfPaIStGi~gfP~~~aa~Iiv~tv~~f~~~~~ 312 (611)
++++|||||+||||+||||.++||+++++++++|+++++
T Consensus 116 ~~~~SIAfP~IstG~~g~p~~~aa~i~~~~v~~fl~~~~ 154 (183)
T 4abl_A 116 KNYSSICLPAIGTGNAKQHPDKVAEAIIDAIEDFVQKGS 154 (183)
T ss_dssp TTCCEEEECCTTSSTTCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cCCCeEeeccccCCCCCcCHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999864
No 75
>2x47_A Macro domain-containing protein 1; signaling protein, signal transduction, estrogen signaling; 1.70A {Homo sapiens}
Probab=98.92 E-value=3.9e-10 Score=113.24 Aligned_cols=110 Identities=9% Similarity=0.060 Sum_probs=81.6
Q ss_pred CCchhhhhhHHHHHHhhcCCCCCCCCCCCCCCCCCCcccccccccccccceeeccccc-ccccccCCCCcchhhhcccCC
Q 007244 194 NPDAKIQLGIMKFLKKVDAPSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDA-AGEEVKGTENPEVASVNQNGS 272 (611)
Q Consensus 194 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~~ 272 (611)
.....+++.+.+-+++++. . ..|++ . .|.+.++.|.++-|.+.|.|.. ........+...-.+|+.+|.
T Consensus 96 AI~~aaG~~l~~ec~~~g~-~--~~G~a-----~--iT~~~~L~~k~VIH~vgP~~~~~~~~~~~~~L~~~y~~~L~~A~ 165 (235)
T 2x47_A 96 CIHRAAGPLLTDECRTLQS-C--KTGKA-----K--ITGGYRLPAKYVIHTVGPIAYGEPSASQAAELRSCYLSSLDLLL 165 (235)
T ss_dssp HHHHHHCHHHHHHHHTSCC-C--CBTCE-----E--EEECTTSSSSEEEEEBCCCCTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHhCC-C--CCCce-----E--EecCCCCCCCEEEEecCccccCCCCcchHHHHHHHHHHHHHHHH
Confidence 3445556777777766522 1 11222 1 3667788999999999998853 112223344445667889999
Q ss_pred CCCCCccccccCccCCCCCChHHHHHHHHHHHHHHHHhcCC
Q 007244 273 SSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGN 313 (611)
Q Consensus 273 ~~~~~SiAfPaIStGi~gfP~~~aa~Iiv~tv~~f~~~~~~ 313 (611)
+++++|||||+||||+||||.++||+|+++++++|+++++.
T Consensus 166 e~~i~SIAfP~IstG~~g~p~~~aa~i~~~~v~~fl~~~~~ 206 (235)
T 2x47_A 166 EHRLRSVAFPCISTGVFGYPCEAAAEIVLATLREWLEQHKD 206 (235)
T ss_dssp HTTCCEEEECCTTCSTTSCCHHHHHHHHHHHHHHHHHHHGG
T ss_pred HhCCceEEeccccCCCCCCCHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999987643
No 76
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=98.89 E-value=9.5e-09 Score=100.08 Aligned_cols=107 Identities=17% Similarity=0.161 Sum_probs=76.4
Q ss_pred cCCCcEEEEEEcCCCCcHHHHHHHHHHHcC----CCeEEeecchhccCCC----Cc-H--HH----HHHHHHHHHHCCCc
Q 007244 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA----RPWARICQDTINKGKS----GT-K--VQ----CLTSASSALKKGKS 80 (611)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~----~~~~~Is~D~i~~~~~----~~-~--~~----~~~~~~~~L~~Gk~ 80 (611)
...++.+|+|+|+|||||||+++.|.+.++ ..+.+++.|.++.... .. . .. +...+...+..|..
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r~~l~~~~~~~~~~r~~~~~~~~~~~~~~l~~g~~ 100 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGLNKDLGFSEADRNENIRRIAEVAKLFADSNSI 100 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTTTTTTTCCSSHHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHhhhhccccCCCHHHHHHHHHHHHHHHHHHHHCCCE
Confidence 346678999999999999999999988654 3477788887764211 11 1 11 22334567788999
Q ss_pred EEEecCCCCHHHHHHHHHh-C------CCCCeEEEEEEeCCHHHHHHHH
Q 007244 81 VFLDRCNLEREQRTDFVKL-G------GPEVDVHAVVLDLPAKLCISRS 122 (611)
Q Consensus 81 VIID~tnl~~~~R~~~~~l-~------~~~~~v~vV~Ld~p~e~~~~Rl 122 (611)
||+|........|..+..+ . ..+.+..+|+|++|.+++.+|+
T Consensus 101 VI~d~~~~~~~~~~~l~~l~~~~~~~~~~~~p~~vi~Ld~~~e~~~~R~ 149 (211)
T 1m7g_A 101 AITSFISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRD 149 (211)
T ss_dssp EEEECCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTSC
T ss_pred EEEecCCccHHHHHHHHHHhhhcccccccCCCeEEEEEeCCHHHHHHhh
Confidence 9999655445666666665 4 3345678999999999999995
No 77
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=98.89 E-value=3.8e-09 Score=106.54 Aligned_cols=127 Identities=12% Similarity=0.151 Sum_probs=81.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhc--cCC----------------------------CCcHHHHHHH
Q 007244 21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN--KGK----------------------------SGTKVQCLTS 70 (611)
Q Consensus 21 ~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~--~~~----------------------------~~~~~~~~~~ 70 (611)
.+|+|+|+|||||||+|+.|++.++.. +++.|.+. .+. ......+...
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~~~--~i~~D~~~~~~~~~~~t~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~~ 79 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETGWP--VVALDRVQCCPQIATGSGRPLESELQSTRRIYLDSRPLTEGILDAESAHRR 79 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCC--EEECCSGGGCGGGTTTTTCCCGGGGTTCCEECSCCCCGGGCSCCHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCCCe--EEeccHHhccCCCccccCCCCHHHHhCCCeEEEeeeccccccccHHHHHHH
Confidence 479999999999999999999998844 46666541 110 0111222222
Q ss_pred HH---HHHHCCCcEEEecCCCCHHHHHHHHHhCC----CCCeEEEEEEeCCH-HHHHHHHHhcccccCCCCCCCHHHHHH
Q 007244 71 AS---SALKKGKSVFLDRCNLEREQRTDFVKLGG----PEVDVHAVVLDLPA-KLCISRSVKRIEHEGNLQGGKAAAVVN 142 (611)
Q Consensus 71 ~~---~~L~~Gk~VIID~tnl~~~~R~~~~~l~~----~~~~v~vV~Ld~p~-e~~~~Rl~~R~~~~g~~~~~vpeevi~ 142 (611)
+. +.+..|..+|+++... .....++ .. .++.+.++|+++|. +++.+|+.+|....- .....++.+++
T Consensus 80 ~~~~i~~~~~g~~vIl~gg~~--~~~~~~~--~~~~~~~~~~~~~i~l~~~~~e~l~~Rl~~R~~~ml-~~~~~~~~~l~ 154 (253)
T 2ze6_A 80 LIFEVDWRKSEEGLILEGGSI--SLLNCMA--KSPFWRSGFQWHVKRLRLGDSDAFLTRAKQRVAEMF-AIREDRPSLLE 154 (253)
T ss_dssp HHHHHHTTTTSSEEEEEECCH--HHHHHHH--HCTTTTSSCEEEEEECCCCCHHHHHHHHHHHHHHHH-CCCSSSCCHHH
T ss_pred HHHHHHHHhCCCCeEEeccHH--HHHHHHH--hcccccccCceEEEEecchhHHHHHHHHHHHHHHHH-hcCcccchHHH
Confidence 33 4446788888887432 1222221 33 55677899999997 999999999976310 01134456777
Q ss_pred HHHhhccCCCcc
Q 007244 143 RMLQKKELPKLS 154 (611)
Q Consensus 143 rm~~~~e~P~~~ 154 (611)
.+...++.|...
T Consensus 155 e~~~~~~~p~~~ 166 (253)
T 2ze6_A 155 ELAELWNYPAAR 166 (253)
T ss_dssp HHHHHHTSTTHH
T ss_pred HHHHhcCCcchH
Confidence 888888777654
No 78
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.88 E-value=2e-08 Score=96.90 Aligned_cols=104 Identities=21% Similarity=0.238 Sum_probs=76.1
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchhccCC-----CCc--HHH----HHHHHHHHHHCCCcEE
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGK-----SGT--KVQ----CLTSASSALKKGKSVF 82 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D~i~~~~-----~~~--~~~----~~~~~~~~L~~Gk~VI 82 (611)
..++.+|+|+|+|||||||+++.|+..+ +...+.++.|.++... +.. ... ....+......|..+|
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi 101 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVRHGLNRDLSFKAEDRAENIRRVGEVAKLFADAGIICI 101 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTTTTCCSSHHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhhhHhhcccCcChHHHHHHHHHHHHHHHHHHhCCceEE
Confidence 4678899999999999999999999877 4333368888775321 111 111 1133444556788899
Q ss_pred EecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHH
Q 007244 83 LDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRS 122 (611)
Q Consensus 83 ID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl 122 (611)
++..+..+..|..+..+ . +..+..|||++|.+++.+|+
T Consensus 102 ~~~~~~~~~~r~~~~~~~~--~~~~~~v~L~a~~e~~~~R~ 140 (200)
T 3uie_A 102 ASLISPYRTDRDACRSLLP--EGDFVEVFMDVPLSVCEARD 140 (200)
T ss_dssp EECCCCCHHHHHHHHHTSC--TTSEEEEEECCCHHHHHHHC
T ss_pred EecCCchHHHHHHHHHhcC--CCCEEEEEEeCCHHHHHHhc
Confidence 98888888888888777 4 33567899999999999997
No 79
>3kh6_A Poly [ADP-ribose] polymerase 15; macro, PARP, BAL3, B-aggressive lymphoma protein 3, SGC, structural genomics consortium, alternative splicing; HET: APR; 2.20A {Homo sapiens} PDB: 3v2b_A*
Probab=98.87 E-value=1.1e-09 Score=107.23 Aligned_cols=99 Identities=12% Similarity=0.068 Sum_probs=76.5
Q ss_pred CCchhhhhhHHHHHHhhcCCCCCCCCCCCCCCCCCCcccccccccccccceeecccccccccccCCCCcchhhhcccCCC
Q 007244 194 NPDAKIQLGIMKFLKKVDAPSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGEEVKGTENPEVASVNQNGSS 273 (611)
Q Consensus 194 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 273 (611)
.....+++.+.+.++++..- . + +++ . .|.++++.|.++-|.+.| ..+...-.+|+..+.+
T Consensus 67 AI~~aaG~~l~~ec~~~~~~-~-~-G~a-----~--iT~g~~L~~k~VIH~vgp----------~~L~~~y~~~L~~a~~ 126 (199)
T 3kh6_A 67 AILEGAGQAVESECAVLAAQ-P-H-RDF-----I--ITPGGCLKCKIIIHVPGG----------KDVRKTVTSVLEECEQ 126 (199)
T ss_dssp HHHHHHCHHHHHHHHHHHTS-C-C-CSS-----E--EEECTTSSSSEEEEEETT----------SCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHhCCC-C-C-CeE-----E--EecCCCCCCCEEEEeCCC----------HHHHHHHHHHHHHHHH
Confidence 44556677888888876432 1 1 222 1 366788899999997643 1234456678899999
Q ss_pred CCCCccccccCccCCCCCChHHHHHHHHHHHHHHHHhcC
Q 007244 274 SDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLG 312 (611)
Q Consensus 274 ~~~~SiAfPaIStGi~gfP~~~aa~Iiv~tv~~f~~~~~ 312 (611)
++++|||||+||||+||||.++||+++++++.+|+++++
T Consensus 127 ~~i~SIAfP~IgtG~~G~p~~~aa~i~~~~v~~fl~~~~ 165 (199)
T 3kh6_A 127 RKYTSVSLPAIGTGNAGKNPITVADNIIDAIVDFSSQHS 165 (199)
T ss_dssp TTCCEEEECCTTSSTTCCCHHHHHHHHHHHHHHHHHHCS
T ss_pred cCCCEEeecccccCCCCcCHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999864
No 80
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=98.86 E-value=7.9e-09 Score=98.33 Aligned_cols=146 Identities=15% Similarity=0.180 Sum_probs=75.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeec-------ch----hccCCCCcHHH-HH---------HHHHHHHHC
Q 007244 22 LVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQ-------DT----INKGKSGTKVQ-CL---------TSASSALKK 77 (611)
Q Consensus 22 LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~-------D~----i~~~~~~~~~~-~~---------~~~~~~L~~ 77 (611)
+|+|.|+|||||||+++.|.+.+ +..+..... +. +.++....+.. ++ ..+...+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~i~~~l~~ 81 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREPGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTEIKQYLSE 81 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEESSCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 79999999999999999999987 644432211 00 11122222111 10 113445677
Q ss_pred CCcEEEecC------------CCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHH
Q 007244 78 GKSVFLDRC------------NLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRM 144 (611)
Q Consensus 78 Gk~VIID~t------------nl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm 144 (611)
|..||+|.. ++.......+... .....+-.+|+|++|.+++.+|+.+|... ...+.+.++
T Consensus 82 g~~vi~dr~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~-------~~~~~~~~~ 154 (197)
T 2z0h_A 82 GYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETALKRKGELNRF-------EKREFLERV 154 (197)
T ss_dssp -CEEEEESCHHHHHHHTTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHC---CCC-------CCHHHHHHH
T ss_pred CCEEEECCChhHHHHHHHhccCCCHHHHHHHHHHhcCCCCCCEEEEEeCCHHHHHHHHhccCcc-------cHHHHHHHH
Confidence 888999953 2333333333333 22222335889999999999999999432 223666666
Q ss_pred HhhccCCCccCCccEEEEcCChhhHHHHHHH
Q 007244 145 LQKKELPKLSEGFSRITLCQNENDVQAALDT 175 (611)
Q Consensus 145 ~~~~e~P~~~EgFd~V~vv~~~~evd~av~~ 175 (611)
...+......+..+.+ +++....++++...
T Consensus 155 ~~~~~~~~~~~~~~~~-~Id~~~~~e~~~~~ 184 (197)
T 2z0h_A 155 REGYLVLAREHPERIV-VLDGKRSIEEIHRD 184 (197)
T ss_dssp HHHHHHHHHHCTTTEE-EEETTSCHHHHHHH
T ss_pred HHHHHHHHHhCCCCEE-EEeCCCCHHHHHHH
Confidence 6655433222222233 33334455555443
No 81
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=98.86 E-value=1.6e-08 Score=100.67 Aligned_cols=158 Identities=15% Similarity=0.191 Sum_probs=87.3
Q ss_pred cCCCcEEEEEEcCCCCcHHHHHHHHHHHcCC--CeEEeec-----------chhccCC-CCcHHH-HH----------HH
Q 007244 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSAR--PWARICQ-----------DTINKGK-SGTKVQ-CL----------TS 70 (611)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~--~~~~Is~-----------D~i~~~~-~~~~~~-~~----------~~ 70 (611)
...++.+|+|.|+|||||||+++.|.+.++. .+..... +.+.++. ...... ++ ..
T Consensus 22 ~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~~~p~~~~~g~~i~~~~~~~~~~~~~~~~ll~~a~r~~~~~~~ 101 (229)
T 4eaq_A 22 SNAMSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTREPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREHLVLK 101 (229)
T ss_dssp CCCCCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEECTTTTCHHHHHHHHHTTC---CCHHHHHHHHHHHHHHHCCCC
T ss_pred ecCCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCceeecCCCCCchHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4457789999999999999999999998762 2221110 1112222 121111 11 11
Q ss_pred HHHHHHCCCcEEEe----------cC--CCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCH
Q 007244 71 ASSALKKGKSVFLD----------RC--NLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKA 137 (611)
Q Consensus 71 ~~~~L~~Gk~VIID----------~t--nl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vp 137 (611)
+..+|..|..||+| +. ++.......+..+ .....+-.+|+|++|.+++.+|+.+|..... +.....
T Consensus 102 i~~~l~~g~~Vi~DRy~~s~~ayqg~~r~~~~~~~~~l~~~~~~~~~pd~vi~L~~~~e~~~~R~~~R~~~~d-r~e~~~ 180 (229)
T 4eaq_A 102 VIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQN-RLDQED 180 (229)
T ss_dssp CHHHHHTTCEEEEECCHHHHCCCCCCCSCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHC------CCCHHH
T ss_pred HHHHHHCCCEEEECCchhHHHHHHHhhcCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCCcc-chhhhh
Confidence 24567889999999 43 3444444444334 3222334688999999999999999864211 111124
Q ss_pred HHHHHHHHhhccCCCccCCccEEEEcCChhhHHHHHHH
Q 007244 138 AAVVNRMLQKKELPKLSEGFSRITLCQNENDVQAALDT 175 (611)
Q Consensus 138 eevi~rm~~~~e~P~~~EgFd~V~vv~~~~evd~av~~ 175 (611)
.+..+++...+......+. ..+++++....++++...
T Consensus 181 ~~~~~rv~~~y~~l~~~~~-~~~~vIDa~~s~eev~~~ 217 (229)
T 4eaq_A 181 LKFHEKVIEGYQEIIHNES-QRFKSVNADQPLENVVED 217 (229)
T ss_dssp HHHHHHHHHHHHHHTTTCT-TTEEEEETTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCC-CCEEEEeCCCCHHHHHHH
Confidence 4556666655543332222 134444444555555543
No 82
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.86 E-value=4.2e-08 Score=93.32 Aligned_cols=108 Identities=21% Similarity=0.218 Sum_probs=73.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhcc----CCCCcH----------HHHHHHHHHHHHCCCcEEEe
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK----GKSGTK----------VQCLTSASSALKKGKSVFLD 84 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~----~~~~~~----------~~~~~~~~~~L~~Gk~VIID 84 (611)
|+.+++|+|+|||||||+++.|+...+ ..+.++.|.+.. +....+ ..+...+...+..+..+|+|
T Consensus 1 mg~ii~l~G~~GaGKSTl~~~L~~~~~-g~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ild 79 (189)
T 2bdt_A 1 MKKLYIITGPAGVGKSTTCKRLAAQLD-NSAYIEGDIINHMVVGGYRPPWESDELLALTWKNITDLTVNFLLAQNDVVLD 79 (189)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHSS-SEEEEEHHHHHTTCCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHhcccC-CeEEEcccchhhhhccccccCccchhHHHHHHHHHHHHHHHHHhcCCcEEEe
Confidence 356899999999999999999988654 235688777642 111111 11223344455677889999
Q ss_pred cCCCCHHHHHHHHHh-C--CCCCeEEEEEEeCCHHHHHHHHHhcccc
Q 007244 85 RCNLEREQRTDFVKL-G--GPEVDVHAVVLDLPAKLCISRSVKRIEH 128 (611)
Q Consensus 85 ~tnl~~~~R~~~~~l-~--~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~ 128 (611)
.. .....+..+..+ + ..+..+.+++|++|.+++.+|...|...
T Consensus 80 ~~-~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d 125 (189)
T 2bdt_A 80 YI-AFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKD 125 (189)
T ss_dssp SC-CCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-
T ss_pred ec-cCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhcccc
Confidence 85 455555555444 3 3344667888999999999999988653
No 83
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=98.85 E-value=1.8e-08 Score=100.99 Aligned_cols=121 Identities=17% Similarity=0.223 Sum_probs=72.9
Q ss_pred ccCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCC--------eEEeecchhccCCCC-----------------c--HHHH
Q 007244 15 EKKWKQILVIMVGAPGSGKSTFCEHVMRSSARP--------WARICQDTINKGKSG-----------------T--KVQC 67 (611)
Q Consensus 15 ~~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~--------~~~Is~D~i~~~~~~-----------------~--~~~~ 67 (611)
....++.+|.|+|+|||||||+|+.|++.++.+ ..+++.|.+...... . ...+
T Consensus 17 ~~~~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~~~~~~~~~~~~~g~~~f~~~~~~d~~~l 96 (252)
T 1uj2_A 17 PNGGEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAKALKGQFNFDHPDAFDNELI 96 (252)
T ss_dssp ----CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTTCSCTTSGGGBCHHHH
T ss_pred ccCCCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccccccChhhhhhhccCCCCCCCcchhhHHHH
Confidence 455678899999999999999999999988743 236888888542110 0 0111
Q ss_pred HHHHHHHHH------------------------CCCcEEEecCCCC-HHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHH
Q 007244 68 LTSASSALK------------------------KGKSVFLDRCNLE-REQRTDFVKLGGPEVDVHAVVLDLPAKLCISRS 122 (611)
Q Consensus 68 ~~~~~~~L~------------------------~Gk~VIID~tnl~-~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl 122 (611)
...+..... ....||+|+..+. ......+ .+ .+|||++|.+++++|+
T Consensus 97 ~~~L~~l~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~vIveG~~~~~~~~~~~~-----~d---~vi~l~~~~e~~~~R~ 168 (252)
T 1uj2_A 97 LKTLKEITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGILAFYSQEVRDL-----FQ---MKLFVDTDADTRLSRR 168 (252)
T ss_dssp HHHHHHHHTTCCEEEEEEETTTTEEEEEEEEECCCSEEEEECTTTTSSHHHHHH-----CS---EEEEEECCHHHHHHHH
T ss_pred HHHHHHHHcCCeeecCccccccccCCCceeeeCCCcEEEEeeeccccCHHHHHh-----cC---eeEEEeCCHHHHHHHH
Confidence 233333221 2346899996653 2222222 22 3889999999999999
Q ss_pred HhcccccCCCCCCCHHHHHHHHHh
Q 007244 123 VKRIEHEGNLQGGKAAAVVNRMLQ 146 (611)
Q Consensus 123 ~~R~~~~g~~~~~vpeevi~rm~~ 146 (611)
..|..... +...+++..++..
T Consensus 169 ~~R~~~~r---g~~~e~i~~~~~~ 189 (252)
T 1uj2_A 169 VLRDISER---GRDLEQILSQYIT 189 (252)
T ss_dssp HHHHHHHS---CCCHHHHHHHHHH
T ss_pred HHHHHhhh---CCCHHHHHHHHHH
Confidence 98852111 1345555555443
No 84
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=98.84 E-value=1.8e-08 Score=114.03 Aligned_cols=106 Identities=20% Similarity=0.282 Sum_probs=81.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchhccCCCC----c---HHH----HHHHHHHHHHCCCcEEEe
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGKSG----T---KVQ----CLTSASSALKKGKSVFLD 84 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D~i~~~~~~----~---~~~----~~~~~~~~L~~Gk~VIID 84 (611)
++.+|+|+|+|||||||+|+.|++.+ +..++.++.|.++.+... . ..+ +...+...+..|..||.|
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR~~L~~~~~fs~~dree~~r~i~eva~~~l~~G~iVI~d 130 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVRRIAEVAKLFADAGLVCITS 130 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHTTTTTTTCCSSHHHHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhhhccCccccCChhhhHHHHHHHHHHHHHHHhCCCEEEEe
Confidence 68899999999999999999999988 777878888887653211 1 111 123334556788888888
Q ss_pred cCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHh
Q 007244 85 RCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVK 124 (611)
Q Consensus 85 ~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~ 124 (611)
........|..+..+ +..+.+..+|||++|.++|.+|+.+
T Consensus 131 ~~s~~~~~r~~~r~ll~~~g~p~~vV~Ldap~Evl~~Rl~r 171 (630)
T 1x6v_B 131 FISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVK 171 (630)
T ss_dssp CCCCCHHHHHHHHHHHHTTTCCEEEEEEECCHHHHHHHCTT
T ss_pred CchhhHHHHHHHHHHHHhCCCCeEEEEEECCHHHHHHHhcc
Confidence 666666678888887 7667778899999999999999864
No 85
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=98.80 E-value=1.2e-08 Score=98.33 Aligned_cols=148 Identities=15% Similarity=0.081 Sum_probs=80.8
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeE---Eeecc------------hhccCCCCcH---HHHH--------HHH
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWA---RICQD------------TINKGKSGTK---VQCL--------TSA 71 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~---~Is~D------------~i~~~~~~~~---~~~~--------~~~ 71 (611)
.++.+|+|+|+|||||||+++.|++.++..+. .+... .+..+..... ..++ ..+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 87 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVKHLYFPNRETGIGQIISKYLKMENSMSNETIHLLFSANRWEHMNEI 87 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecCCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 34679999999999999999999987653221 11110 1111111111 0111 235
Q ss_pred HHHHHCCCcEEEecCCCCH----HHH----HHHHH-h-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHH
Q 007244 72 SSALKKGKSVFLDRCNLER----EQR----TDFVK-L-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVV 141 (611)
Q Consensus 72 ~~~L~~Gk~VIID~tnl~~----~~R----~~~~~-l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi 141 (611)
...+..|..||+|.+.... ..+ ..|+. + ......-.+|+|++|.+++.+|+..|..+ . + .++..
T Consensus 88 ~~~l~~~~~vi~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r~~r---~--~-~~~~~ 161 (212)
T 2wwf_A 88 KSLLLKGIWVVCDRYAYSGVAYSSGALNLNKTWCMNPDQGLIKPDVVFYLNVPPNYAQNRSDYGEEI---Y--E-KVETQ 161 (212)
T ss_dssp HHHHHHTCEEEEECCHHHHHHHHHHHSCCCHHHHHGGGTTSBCCSEEEEEECCTTGGGGSTTTTSST---T--C-SHHHH
T ss_pred HHHHhCCCEEEEecchhhHHHHHHhccCCCHHHHHHHhhCCCCCCEEEEEeCCHHHHHHhhccCccc---c--c-HHHHH
Confidence 5667788999999865321 111 12332 2 22122335899999999999998765321 1 1 24556
Q ss_pred HHHHhhccCCCccCCccEEEEcCChhhHHHHHH
Q 007244 142 NRMLQKKELPKLSEGFSRITLCQNENDVQAALD 174 (611)
Q Consensus 142 ~rm~~~~e~P~~~EgFd~V~vv~~~~evd~av~ 174 (611)
.++...++.+.. ....+++.. ...++++..
T Consensus 162 ~~~~~~~~~~~~--~~~~~~Id~-~~~~~~~~~ 191 (212)
T 2wwf_A 162 KKIYETYKHFAH--EDYWINIDA-TRKIEDIHN 191 (212)
T ss_dssp HHHHHHGGGGTT--CTTEEEEEC-SSCHHHHHH
T ss_pred HHHHHHHHHHhc--cCCEEEEEC-CCCHHHHHH
Confidence 666555544432 233344433 244444443
No 86
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.79 E-value=3.2e-08 Score=98.01 Aligned_cols=144 Identities=15% Similarity=0.159 Sum_probs=93.7
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHcCC-Ce-EEee--cchhc----c------------------CCCCcHHH-----
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSSAR-PW-ARIC--QDTIN----K------------------GKSGTKVQ----- 66 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~-~~-~~Is--~D~i~----~------------------~~~~~~~~----- 66 (611)
++..+++|+||+||||||+.+.|...... .+ ..++ ....+ + +.+.++..
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~~~~ 93 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGNY 93 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHHHhcc
Confidence 45679999999999999999999887642 11 1111 10000 0 00000000
Q ss_pred ---HHHHHHHHHHCCCcEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHH
Q 007244 67 ---CLTSASSALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVN 142 (611)
Q Consensus 67 ---~~~~~~~~L~~Gk~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~ 142 (611)
-...+.+.|..|+.+|+| +....+..+.++ . ....+|+...+.+++.+|+..|+. +.++++..
T Consensus 94 yg~~~~~v~~~l~~G~illLD---LD~~~~~~i~~~l~---~~~tI~i~th~~~~l~~Rl~~rG~-------~~~e~i~~ 160 (219)
T 1s96_A 94 YGTSREAIEQVLATGVDVFLD---IDWQGAQQIRQKMP---HARSIFILPPSKIELDRRLRGRGQ-------DSEEVIAK 160 (219)
T ss_dssp EEEEHHHHHHHHTTTCEEEEE---CCHHHHHHHHHHCT---TCEEEEEECSSHHHHHHHHHTTSC-------SCHHHHHH
T ss_pred CCCCHHHHHHHHhcCCeEEEE---ECHHHHHHHHHHcc---CCEEEEEECCCHHHHHHHHHHcCC-------CCHHHHHH
Confidence 014577889999999999 677777777777 5 234566667788999999988874 56788888
Q ss_pred HHHhhccCCCccCCccEEEEcCChhhHHHHHHHhc
Q 007244 143 RMLQKKELPKLSEGFSRITLCQNENDVQAALDTYS 177 (611)
Q Consensus 143 rm~~~~e~P~~~EgFd~V~vv~~~~evd~av~~~~ 177 (611)
|+.+...+......|+++++++ +++.+...+.
T Consensus 161 rl~~a~~e~~~~~~~d~~i~Nd---~l~~a~~~l~ 192 (219)
T 1s96_A 161 RMAQAVAEMSHYAEYDYLIVND---DFDTALTDLK 192 (219)
T ss_dssp HHHHHHHHHTTGGGSSEEEECS---SHHHHHHHHH
T ss_pred HHHHHHHHHhhccCCCEEEECc---CHHHHHHHHH
Confidence 8877644334456799987774 4555555544
No 87
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=98.79 E-value=2.4e-08 Score=95.81 Aligned_cols=107 Identities=18% Similarity=0.086 Sum_probs=65.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCC--eEEee---cchh----ccC----CCCcHH-HHH----------HHHHHHH
Q 007244 20 QILVIMVGAPGSGKSTFCEHVMRSSARP--WARIC---QDTI----NKG----KSGTKV-QCL----------TSASSAL 75 (611)
Q Consensus 20 p~LIvLvG~PGSGKST~A~~L~~~~~~~--~~~Is---~D~i----~~~----~~~~~~-~~~----------~~~~~~L 75 (611)
+.+|+|.|+|||||||+++.|++.++.. +.... .+.+ ..+ ....+. ..+ ..+...+
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~i~~~l 83 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELKRDVYLTEWNSSDWIHDIIKEAKKKDLLTPLTFSLIHATDFSDRYERYILPML 83 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTTSCEEEEETTCCCHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEEecCCcHHHHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5799999999999999999999988743 32221 1111 111 122111 111 1234566
Q ss_pred HCCCcEEEecCCCCHHHH--------HHHHHh-CCCCCeEEEEEEeCCHHHHHHHHH-hcc
Q 007244 76 KKGKSVFLDRCNLEREQR--------TDFVKL-GGPEVDVHAVVLDLPAKLCISRSV-KRI 126 (611)
Q Consensus 76 ~~Gk~VIID~tnl~~~~R--------~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~-~R~ 126 (611)
..|..||+|+.++..... ..+..+ ......-.+|+|++|.+++.+|+. .|.
T Consensus 84 ~~g~~vi~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~~R~ 144 (213)
T 2plr_A 84 KSGFIVISDRYIYTAYARDSVRGVDIDWVKKLYSFAIKPDITFYIRVSPDIALERIKKSKR 144 (213)
T ss_dssp HTTCEEEEESCHHHHHHHHHTTTCCHHHHHHHTTTSCCCSEEEEEECCHHHHHHHHHHTTC
T ss_pred hCCCEEEEeCcHhHHHHHHHhhCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcccc
Confidence 788999999865432111 112223 222223358999999999999998 786
No 88
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=98.79 E-value=2.5e-08 Score=96.17 Aligned_cols=108 Identities=14% Similarity=0.121 Sum_probs=60.2
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHcCCC---eEEeec--------chh----ccC-CCCcHH-H-H--------HHHH
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARP---WARICQ--------DTI----NKG-KSGTKV-Q-C--------LTSA 71 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~---~~~Is~--------D~i----~~~-~~~~~~-~-~--------~~~~ 71 (611)
.++.+|+|+|+|||||||+++.|++.++.. ...+.. +.+ ..+ .+..+. . + ...+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~i 86 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDVEDHSVHLLFSANRWEQVPLI 86 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEeeCCCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 346799999999999999999999876522 211211 001 111 111111 0 0 0235
Q ss_pred HHHHHCCCcEEEecCCCCHH---------HHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhc
Q 007244 72 SSALKKGKSVFLDRCNLERE---------QRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKR 125 (611)
Q Consensus 72 ~~~L~~Gk~VIID~tnl~~~---------~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R 125 (611)
...+..|..||+|...+... .+..+..+ ......-.+|+|++|.+++.+|+..|
T Consensus 87 ~~~l~~~~~vi~dr~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~r~ 150 (215)
T 1nn5_A 87 KEKLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGLPKPDLVLFLQLQLADAAKRGAFG 150 (215)
T ss_dssp HHHHHTTCEEEEESCHHHHHHHHHTSTTCCHHHHHGGGTTSBCCSEEEEEECCHHHHHHC----
T ss_pred HHHHHCCCEEEEeCCcccHHHHHhhcCCCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhccC
Confidence 56678899999995321110 12222223 22222335899999999999999644
No 89
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=98.79 E-value=3.2e-09 Score=100.40 Aligned_cols=97 Identities=15% Similarity=0.169 Sum_probs=64.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhcc---------CCC----CcHHHHHHHHHHHHHCCCcEEEec
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK---------GKS----GTKVQCLTSASSALKKGKSVFLDR 85 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~---------~~~----~~~~~~~~~~~~~L~~Gk~VIID~ 85 (611)
++.+|+|+|+|||||||+++.|++.++ +.+++.|.+.. ... .....+...+...+..|. +|+|.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~vv~~ 86 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSG--LKYINVGDLAREEQLYDGYDEEYDCPILDEDRVVDELDNQMREGG-VIVDY 86 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHC--CEEEEHHHHHHHHTCEEEEETTTTEEEECHHHHHHHHHHHHHHCC-EEEEC
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhC--CeEEEHHHHHhhcchhhhhhhhhcCccCChHHHHHHHHHHHhcCC-EEEEe
Confidence 456789999999999999999999988 45577666521 111 112335566666777764 45565
Q ss_pred CCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244 86 CNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (611)
Q Consensus 86 tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~ 127 (611)
.+.. . +.. ...-.+|||++|.+++.+|+.+|..
T Consensus 87 ~~~~-----~---~~~-~~~~~vi~L~~~~e~l~~R~~~r~~ 119 (180)
T 3iij_A 87 HGCD-----F---FPE-RWFHIVFVLRTDTNVLYERLETRGY 119 (180)
T ss_dssp SCCT-----T---SCG-GGCSEEEEEECCHHHHHHHHHHTTC
T ss_pred chhh-----h---cch-hcCCEEEEEECCHHHHHHHHHHcCC
Confidence 3311 0 011 0122588999999999999999964
No 90
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=98.78 E-value=5.1e-08 Score=92.04 Aligned_cols=108 Identities=19% Similarity=0.308 Sum_probs=68.8
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchhccCC---CC-c---HHHHHHHH---HHHH-HCCCcEEE
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGK---SG-T---KVQCLTSA---SSAL-KKGKSVFL 83 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D~i~~~~---~~-~---~~~~~~~~---~~~L-~~Gk~VII 83 (611)
.++.+|+|+|++||||||+++.|+..+ +.+++.++.|.++... .. . ....+..+ ...+ ..|..++.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVRRIAEVAKLFADAGLVCIT 82 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTTTTCCSSHHHHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHHHHHhhccccccccHHHHHHHHHHHHHHHHHCCCEEEE
Confidence 356789999999999999999999876 6667667777775421 11 1 11122211 1223 45544444
Q ss_pred ecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhc
Q 007244 84 DRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKR 125 (611)
Q Consensus 84 D~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R 125 (611)
+..+.....+..+..+ +..+....+|+|++|.+++.+|+.+|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~~ 125 (179)
T 2pez_A 83 SFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKG 125 (179)
T ss_dssp ECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCTTS
T ss_pred ecCCcchHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHHHhhh
Confidence 4443333445555555 44556667899999999999998655
No 91
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=98.78 E-value=2.6e-08 Score=109.09 Aligned_cols=129 Identities=16% Similarity=0.174 Sum_probs=77.8
Q ss_pred cCCCcEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEeecchhccC---C---------CCc-----HHH----HHHHH
Q 007244 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINKG---K---------SGT-----KVQ----CLTSA 71 (611)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~---~~~~~Is~D~i~~~---~---------~~~-----~~~----~~~~~ 71 (611)
...++.+|+|+|+|||||||++++|++.++ .....++.|.++.. . .+. +.. ++..+
T Consensus 35 ~~~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~ 114 (469)
T 1bif_A 35 MTNCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDV 114 (469)
T ss_dssp ---CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHH
Confidence 356788999999999999999999998754 23445554444311 0 011 111 11223
Q ss_pred HHHH--HCCCcEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCC-HHHHHHHHHhcccccCCCCCCCHHHHHHHH
Q 007244 72 SSAL--KKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLP-AKLCISRSVKRIEHEGNLQGGKAAAVVNRM 144 (611)
Q Consensus 72 ~~~L--~~Gk~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p-~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm 144 (611)
...+ ..|..+|+|.+|.....|..|++. +..+..+.++.+.++ .+++.+|...|...........+++++..+
T Consensus 115 ~~~l~~~~G~~vV~D~tn~~~~~R~~~~~~~~~~~~~vv~l~~~~~~~~~i~~r~~~~~~~rp~~~~~~~e~~~~~~ 191 (469)
T 1bif_A 115 RKFLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESICVDPEVIAANIVQVKLGSPDYVNRDSDEATEDF 191 (469)
T ss_dssp HHHHHTTCCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEECCCCHHHHHHHHHHHTTTSTTTTTSCHHHHHHHH
T ss_pred HHHHHhCCCCEEEEeCCCCCHHHHHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHhhhcCCcccCCCHHHHHHHH
Confidence 4555 457789999999999999999888 666665554444445 566666665444321112223355554444
No 92
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=98.78 E-value=1.1e-08 Score=95.10 Aligned_cols=98 Identities=18% Similarity=0.164 Sum_probs=63.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCC-----------Cc--HHHHHHHHHHHHHCCCcEEEe-c--
Q 007244 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKS-----------GT--KVQCLTSASSALKKGKSVFLD-R-- 85 (611)
Q Consensus 22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~-----------~~--~~~~~~~~~~~L~~Gk~VIID-~-- 85 (611)
.|+|+|+|||||||+++.|++.++. .+++.|.+..... +. .......+...|.....+||+ +
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~--~~i~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~Vi~~g~~ 79 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNI--PFYDVDEEVQKREGLSIPQIFEKKGEAYFRKLEFEVLKDLSEKENVVISTGGG 79 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTC--CEEEHHHHHHHHHTSCHHHHHHHSCHHHHHHHHHHHHHHHTTSSSEEEECCHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC--CEEECcHHHHHHcCCCHHHHHHHhChHHHHHHHHHHHHHHhccCCeEEECCCC
Confidence 5899999999999999999999884 4577777632111 10 001223344455545566665 2
Q ss_pred CCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244 86 CNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (611)
Q Consensus 86 tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~ 127 (611)
..+....+..+ +..+ .+|+|++|.+++.+|+.+|..
T Consensus 80 ~~~~~~~~~~l---~~~~---~~i~l~~~~e~~~~R~~~r~~ 115 (168)
T 2pt5_A 80 LGANEEALNFM---KSRG---TTVFIDIPFEVFLERCKDSKE 115 (168)
T ss_dssp HHTCHHHHHHH---HTTS---EEEEEECCHHHHHHHCBCTTC
T ss_pred EeCCHHHHHHH---HcCC---EEEEEECCHHHHHHHHhCCCC
Confidence 23444444433 2223 488999999999999988753
No 93
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.75 E-value=9.1e-09 Score=96.15 Aligned_cols=121 Identities=16% Similarity=0.189 Sum_probs=67.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCC-cHHHH------------HHHHHHHHHCCCcEEEec
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG-TKVQC------------LTSASSALKKGKSVFLDR 85 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~-~~~~~------------~~~~~~~L~~Gk~VIID~ 85 (611)
++.+|+|+|+|||||||+++.|+..++ +.+++.|.+.....+ ....+ ...+...+....++|+..
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~--~~~id~d~~~~~~~~~~i~~i~~~~g~~~~~~~~~~~l~~l~~~~~~v~~~ 80 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN--MEFYDSDQEIEKRTGADVGWVFDLEGEEGFRDREEKVINELTEKQGIVLAT 80 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT--CEEEEHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTSSSEEEEC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC--CCEEeccHHHHHHhCcCHHHHHHHHhHHHHHHHHHHHHHHHHhCCCeEEEC
Confidence 456899999999999999999999888 456787765321111 00000 012233444556777752
Q ss_pred ---CCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCH-HHHHHHHHhhc
Q 007244 86 ---CNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKA-AAVVNRMLQKK 148 (611)
Q Consensus 86 ---tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vp-eevi~rm~~~~ 148 (611)
..+....+..+ +..+. ++++++|.+++.+|+.+|..++.. ....+ .+.+..++...
T Consensus 81 ~~~~~~~~~~~~~l---~~~~~---~i~l~~~~~~l~~R~~~r~~r~~~-~~~~~~~~~~~~~~~~r 140 (173)
T 1kag_A 81 GGGSVKSRETRNRL---SARGV---VVYLETTIEKQLARTQRDKKRPLL-HVETPPREVLEALANER 140 (173)
T ss_dssp CTTGGGSHHHHHHH---HHHSE---EEECCCCHHHHHSCC------CCS-SSSCCCHHHHHHHHHHH
T ss_pred CCeEEecHHHHHHH---HhCCE---EEEEeCCHHHHHHHHhCCCCCCCC-CCCCchHHHHHHHHHHH
Confidence 22333333322 22232 789999999999999988654432 11222 45556555543
No 94
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=98.72 E-value=2e-08 Score=93.65 Aligned_cols=96 Identities=22% Similarity=0.179 Sum_probs=62.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCC-cH--------H----HHHHHHHHHHHCCCcEEEecC-
Q 007244 21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG-TK--------V----QCLTSASSALKKGKSVFLDRC- 86 (611)
Q Consensus 21 ~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~-~~--------~----~~~~~~~~~L~~Gk~VIID~t- 86 (611)
.+|+|+|+|||||||+|+.|++.++ +.+++.|.+.....+ .. . .....+...|. +..+||+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg--~~~id~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~vi~~g~ 79 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG--YEFVDTDIFMQHTSGMTVADVVAAEGWPGFRRRESEALQAVA-TPNRVVATGG 79 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT--CEEEEHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHC-CSSEEEECCT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC--CcEEcccHHHHHHhCCCHHHHHHHcCHHHHHHHHHHHHHHhh-cCCeEEECCC
Confidence 4799999999999999999999988 556888776421111 00 0 11122333454 556777642
Q ss_pred --CCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHH--hc
Q 007244 87 --NLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSV--KR 125 (611)
Q Consensus 87 --nl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~--~R 125 (611)
.+....+..+ +..+ .+|+|++|.+++.+|+. .|
T Consensus 80 ~~~~~~~~~~~l---~~~~---~~i~l~~~~e~~~~R~~~~~r 116 (173)
T 1e6c_A 80 GMVLLEQNRQFM---RAHG---TVVYLFAPAEELALRLQASLQ 116 (173)
T ss_dssp TGGGSHHHHHHH---HHHS---EEEEEECCHHHHHHHHHHHHC
T ss_pred cEEeCHHHHHHH---HcCC---eEEEEECCHHHHHHHHhhccC
Confidence 2344444433 1112 48899999999999998 77
No 95
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=98.72 E-value=5.5e-08 Score=99.58 Aligned_cols=113 Identities=19% Similarity=0.187 Sum_probs=70.5
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhc-----cC-------------------CCCcHHH------
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN-----KG-------------------KSGTKVQ------ 66 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~-----~~-------------------~~~~~~~------ 66 (611)
++.+.+|+|+|+|||||||+|+.|+ .++ +.+|+.|.+. .+ ....+..
T Consensus 72 ~~~~~iI~I~G~~GSGKSTva~~La-~lg--~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~i~~~~g~idr~~l~~~vf 148 (281)
T 2f6r_A 72 PSGLYVLGLTGISGSGKSSVAQRLK-NLG--AYIIDSDHLGHRAYAPGGPAYQPVVEAFGTDILHKDGTINRKVLGSRVF 148 (281)
T ss_dssp CTTCEEEEEEECTTSCHHHHHHHHH-HHT--CEEEEHHHHHHHHTSTTSTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHT
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHH-HCC--CcEEehhHHHHHHhcCChHHHHHHHHHcCccccCCCCCcCHHHHHHHHh
Confidence 4567899999999999999999998 567 5668877661 00 0000000
Q ss_pred ----------------H----HHHHHHHHHCC-CcEEEecCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhc
Q 007244 67 ----------------C----LTSASSALKKG-KSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKR 125 (611)
Q Consensus 67 ----------------~----~~~~~~~L~~G-k~VIID~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R 125 (611)
+ ...+......+ ..||+|+..+... .|.. ..+ .+||+++|.+++.+|+.+|
T Consensus 149 ~~~~~~~~l~~i~~P~i~~~~~~~~~~~~~~~~~~vIveg~~l~~~---~~~~--~~d---~vI~l~a~~ev~~~Rl~~R 220 (281)
T 2f6r_A 149 GNKKQMKILTDIVWPVIAKLAREEMDVAVAKGKTLCVIDAAMLLEA---GWQS--MVH---EVWTVVIPETEAVRRIVER 220 (281)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECTTTTTT---TGGG--GCS---EEEEEECCHHHHHHHHHHH
T ss_pred CCHHHHHHhhcccChHHHHHHHHHHHHHhccCCCEEEEEechhhcc---chHH--hCC---EEEEEcCCHHHHHHHHHHc
Confidence 0 01112222333 5799999654322 1211 122 4889999999999999998
Q ss_pred ccccCCCCCCCHHHHHHHHHhh
Q 007244 126 IEHEGNLQGGKAAAVVNRMLQK 147 (611)
Q Consensus 126 ~~~~g~~~~~vpeevi~rm~~~ 147 (611)
.. ...+++..++..+
T Consensus 221 ~g-------~s~e~~~~ri~~q 235 (281)
T 2f6r_A 221 DG-------LSEAAAQSRLQSQ 235 (281)
T ss_dssp HC-------CCHHHHHHHHHTS
T ss_pred CC-------CCHHHHHHHHHHc
Confidence 53 2456666666665
No 96
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.70 E-value=8.7e-08 Score=91.78 Aligned_cols=142 Identities=15% Similarity=0.208 Sum_probs=60.1
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeE-Eeecchhcc-------C--CC-CcHH---H-----------------
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWA-RICQDTINK-------G--KS-GTKV---Q----------------- 66 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~-~Is~D~i~~-------~--~~-~~~~---~----------------- 66 (611)
.++.+|+|+|+|||||||+++.|...+..... .+.. ..+. + .. .... .
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYKYSISM-TTRQMREGEVDGVDYFFKTRDAFEALIKDDQFIEYAEYVGNY 82 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEECCCCE-ECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhhCCCeEEeccc-ccCCCCCCccCCCceEEcCHHHHHHHHHcCCeEEEEeECCee
Confidence 34679999999999999999999887621111 1110 0000 0 00 0000 0
Q ss_pred ---HHHHHHHHHHCCCcEEEecCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHH
Q 007244 67 ---CLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNR 143 (611)
Q Consensus 67 ---~~~~~~~~L~~Gk~VIID~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~r 143 (611)
....+...+..|..||+|....... .+... .+..+.+++.+++.+++.+|+.+|.. ..++++..+
T Consensus 83 ~g~~~~~i~~~l~~g~~vv~d~~~~~~~---~~~~~--~~~~~~i~~~~~~~~~~~~Rl~~R~~-------~~~~~~~~r 150 (207)
T 2j41_A 83 YGTPVQYVKDTMDEGHDVFLEIEVEGAK---QVRKK--FPDALFIFLAPPSLEHLRERLVGRGT-------ESDEKIQSR 150 (207)
T ss_dssp EEEEHHHHHHHHHTTCEEEEECCGGGHH---HHHHH--CTTSEEEEEECCC-----------------------------
T ss_pred cCCCHHHHHHHHHcCCeEEEEECHHHHH---HHHHh--cCCeEEEEEECCCHHHHHHHHHhcCC-------CCHHHHHHH
Confidence 0145666788899999998543322 22222 22223444455778999999998864 223344444
Q ss_pred HHhhccCCCccCCccEEEEcCChhhHHHHHHH
Q 007244 144 MLQKKELPKLSEGFSRITLCQNENDVQAALDT 175 (611)
Q Consensus 144 m~~~~e~P~~~EgFd~V~vv~~~~evd~av~~ 175 (611)
+...+......+.++.++... .++++...
T Consensus 151 l~~~~~~~~~~~~~d~vI~n~---~~e~~~~~ 179 (207)
T 2j41_A 151 INEARKEVEMMNLYDYVVVND---EVELAKNR 179 (207)
T ss_dssp -----CGGGGGGGCSEEEECS---SHHHHHHH
T ss_pred HHHHHHHHhccccCCEEEECC---CHHHHHHH
Confidence 544432222334566665443 35544443
No 97
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=98.70 E-value=9.2e-08 Score=91.17 Aligned_cols=100 Identities=18% Similarity=0.194 Sum_probs=66.1
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHH-cCCCeEEeecchhccC-------------CCC---cHHHHHHHHHHHHHCCC
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRS-SARPWARICQDTINKG-------------KSG---TKVQCLTSASSALKKGK 79 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~-~~~~~~~Is~D~i~~~-------------~~~---~~~~~~~~~~~~L~~Gk 79 (611)
..++.+|+|+|+|||||||+++.|++. ++ +.+++.|.+... .+. ........+...+..+.
T Consensus 7 ~~~~~~I~l~G~~GsGKSTv~~~La~~l~g--~~~id~d~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~~~~~g 84 (184)
T 1y63_A 7 QPKGINILITGTPGTGKTSMAEMIAAELDG--FQHLEVGKLVKENHFYTEYDTELDTHIIEEKDEDRLLDFMEPIMVSRG 84 (184)
T ss_dssp CCSSCEEEEECSTTSSHHHHHHHHHHHSTT--EEEEEHHHHHHHTTCSCC------CCCCCHHHHHHHHHHHHHHHTSSS
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHhcCC--CEEeeHHHHHHHhhhhhhHHHHhhhcccCCCCHHHHHHHHHHHHhccC
Confidence 345678999999999999999999998 67 667887765210 111 11223445555563455
Q ss_pred cEEEecCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244 80 SVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (611)
Q Consensus 80 ~VIID~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~ 127 (611)
.+|+|..+.. .+.... .-.+|+|++|.+++.+|+.+|..
T Consensus 85 ~~vi~~~~~~--------~~~~~~-~~~vi~l~~~~e~~~~Rl~~R~~ 123 (184)
T 1y63_A 85 NHVVDYHSSE--------LFPERW-FHMVVVLHTSTEVLFERLTKRQY 123 (184)
T ss_dssp EEEEECSCCT--------TSCGGG-CSEEEEEECCHHHHHHHHHHTTC
T ss_pred CEEEeCchHh--------hhhhcc-CCEEEEEECCHHHHHHHHHhCCC
Confidence 6788874321 012111 12489999999999999999953
No 98
>2dx6_A Hypothetical protein TTHA0132; conserved hypothetical protein, structural genomics, NPPSFA; 1.78A {Thermus thermophilus} PDB: 3v45_A
Probab=98.70 E-value=2.6e-09 Score=100.88 Aligned_cols=101 Identities=14% Similarity=0.046 Sum_probs=75.3
Q ss_pred CCchhhhhhHHHHHHhhcCCCCCCCCCCCCCCCCCCcccccccccccccceeecccccccccccCCCCcchhhhcccCCC
Q 007244 194 NPDAKIQLGIMKFLKKVDAPSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGEEVKGTENPEVASVNQNGSS 273 (611)
Q Consensus 194 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 273 (611)
.....+++.+.+..++.+. ..+ |++ . .|.+.++.+.++-|.+.|.|.. .. .+.+...-.+|+..+.+
T Consensus 36 aI~~~~G~~l~~~c~~~g~-~~~--G~a-----~--it~~~~L~~~~Vih~vgp~~~~--~~-~~~L~~~~~~~L~~a~~ 102 (159)
T 2dx6_A 36 AILRKGGPSIQEECDRIGK-IRV--GEA-----A--VTGAGNLPVRYVIHAAVLGDEP--AS-LETVRKATKSALEKAVE 102 (159)
T ss_dssp HHHHHHCTHHHHHHHHHCC-CCT--TCE-----E--EEECTTSSSSEEEEEEEESSSC--CC-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHhcCC-CCC--CcE-----E--EecCCCCCCCEEEEEeCCCCCC--ch-HHHHHHHHHHHHHHHHH
Confidence 3445556677777776532 111 222 1 3556778899999999998862 21 23334455678899999
Q ss_pred CCCCccccccCccCCCCCChHHHHHHHHHHHHHH
Q 007244 274 SDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEF 307 (611)
Q Consensus 274 ~~~~SiAfPaIStGi~gfP~~~aa~Iiv~tv~~f 307 (611)
++++|||||+||||+||||.++|++++++++.+|
T Consensus 103 ~~~~sIa~P~igtG~~g~p~~~~a~i~~~~~~~~ 136 (159)
T 2dx6_A 103 LGLKTVAFPLLGTGVGGLPVEAVARVMLEEIKKA 136 (159)
T ss_dssp TTCSEEEECCTTSSTTCCCHHHHHHHHHHHHTTS
T ss_pred cCCcEEEECCccCCCCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999
No 99
>3ejf_A Non-structural protein 3; IBV, coronavirus, X-domain, macro domain, NSP3, ADRP, hydrolase, ribosomal frameshifting; 1.60A {Avian infectious bronchitis virus} PDB: 3eke_A* 3ewo_A 3ewp_A*
Probab=98.69 E-value=6.4e-09 Score=99.86 Aligned_cols=109 Identities=12% Similarity=0.085 Sum_probs=71.7
Q ss_pred CCchhhhhhHHHHHHhhcCCCCCCCCCCCCCCCCCCcccccccccccccceeecccccccccccCCCCcchhhhcccCCC
Q 007244 194 NPDAKIQLGIMKFLKKVDAPSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGEEVKGTENPEVASVNQNGSS 273 (611)
Q Consensus 194 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 273 (611)
......++.|++..+++-... +... -..|.+++..+..+-|.+-|.|.. ...... -.+|+..+-.
T Consensus 56 AI~~aaG~~l~~ec~~~~~~~----g~~~-----a~iT~G~~l~t~~VIHtVGP~~~~--~~~~~~----L~~~y~~~L~ 120 (176)
T 3ejf_A 56 AIADFCGLDFVEYCEDYVKKH----GPQQ-----RLVTPSFVKGIQCVNNVVGPRHGD--NNLHEK----LVAAYKNVLV 120 (176)
T ss_dssp HHHHHHCHHHHHHHHHHHHHH----CCCS-----EEEECCCSTTEEEEEEECCCCTTC--SCHHHH----HHHHHHTTCC
T ss_pred HHHHHhhHHHHHHHHHHHHhc----CCCC-----eeecccccccCCEEEEeCCCCCCC--ccHHHH----HHHHHHHHHH
Confidence 455566788888877752210 0000 012445566666799999888854 222222 2333333333
Q ss_pred CCCCccccccCccCCCCCChHHHHHHHHHHHHHHHHhcCCeEEEEeecC
Q 007244 274 SDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGNARLVLVDLT 322 (611)
Q Consensus 274 ~~~~SiAfPaIStGi~gfP~~~aa~Iiv~tv~~f~~~~~~i~iV~vd~s 322 (611)
++++|||||+||||+||||.++||+++++++++ ..+++++++.+
T Consensus 121 ~~~~SIAfPaIstGi~g~P~~~aA~ia~~~v~~-----~~v~v~~~~~D 164 (176)
T 3ejf_A 121 DGVVNYVVPVLSLGIFGVDFKMSIDAMREAFEG-----CTIRVLLFSLS 164 (176)
T ss_dssp TTCCEEEEECCCTTSTTCCHHHHHHHHHHHHTT-----CCCEEEEEESC
T ss_pred cCCcEEEECccccCCCCCCHHHHHHHHHHHhhh-----cceEEEEEcCC
Confidence 899999999999999999999999999999973 34777776544
No 100
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.68 E-value=7.1e-09 Score=102.26 Aligned_cols=135 Identities=13% Similarity=0.119 Sum_probs=61.2
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHH-HHcCC--------------------CeEEeecchhc----cCCCCcH----H---
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVM-RSSAR--------------------PWARICQDTIN----KGKSGTK----V--- 65 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~-~~~~~--------------------~~~~Is~D~i~----~~~~~~~----~--- 65 (611)
.++.+|.|+||+||||||+++.|. ..++. .+..++.+.+. .+.+..+ .
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEKEGKDYYFVDREEFLRLCSNGEIIEHAEVFGNFY 104 (231)
T ss_dssp ECCCEEEEECSCC----CHHHHHHC----CEEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcCCCCcccccccCCCCCCccccCCCeEEEecHHHhhhhhhcCceehhhhhccccC
Confidence 345789999999999999999998 65421 11111111110 0000000 0
Q ss_pred -HHHHHHHHHHHCCCcEEEecCCCCHHHHHHHHHh-CCC-CCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHH
Q 007244 66 -QCLTSASSALKKGKSVFLDRCNLEREQRTDFVKL-GGP-EVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVN 142 (611)
Q Consensus 66 -~~~~~~~~~L~~Gk~VIID~tnl~~~~R~~~~~l-~~~-~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~ 142 (611)
.....+.+.+..|+.+|+|.. ......+ ... .....+++.+++.+++.+|+.+|.. ...+++..
T Consensus 105 ~~~~~~i~~~~~~~~~vild~~------~~g~~~~~~~~~~~~~~v~v~~~~~~~l~~Rl~~R~~-------~~~~~i~~ 171 (231)
T 3lnc_A 105 GVPRKNLEDNVDKGVSTLLVID------WQGAFKFMEMMREHVVSIFIMPPSMEELRRRLCGRRA-------DDSEVVEA 171 (231)
T ss_dssp EEECTTHHHHHHHTCEEEEECC------HHHHHHHHHHSGGGEEEEEEECSCHHHHHHC---------------------
T ss_pred CCCHHHHHHHHHcCCeEEEEcC------HHHHHHHHHhcCCCeEEEEEECCcHHHHHHHHHHcCC-------CCHHHHHH
Confidence 001235667788999999862 2222223 223 2223344557789999999998854 23444555
Q ss_pred HHHhhccCCCccCCccEEEEcCC
Q 007244 143 RMLQKKELPKLSEGFSRITLCQN 165 (611)
Q Consensus 143 rm~~~~e~P~~~EgFd~V~vv~~ 165 (611)
++..+.........||.|+++++
T Consensus 172 rl~~~~~~~~~~~~~d~vI~n~~ 194 (231)
T 3lnc_A 172 RLKGAAFEISHCEAYDYVIVNED 194 (231)
T ss_dssp CHHHHHHHHTTGGGSSEEEECSS
T ss_pred HHHHHHHHHhhhcCCeEEEECcC
Confidence 55544333333556788877754
No 101
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=98.68 E-value=6.3e-08 Score=108.92 Aligned_cols=106 Identities=14% Similarity=0.133 Sum_probs=79.9
Q ss_pred cCCCcEEEEEEcCCCCcHHHHHHHHHHHcC----CCeEEeecchhccCC-----CCcHHH------HHHHHHHHHHCCCc
Q 007244 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA----RPWARICQDTINKGK-----SGTKVQ------CLTSASSALKKGKS 80 (611)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~----~~~~~Is~D~i~~~~-----~~~~~~------~~~~~~~~L~~Gk~ 80 (611)
..+++.+|+|+|+|||||||+|+.|.+.++ ..+..++.|.++.+. +...+. +...+...+..|..
T Consensus 392 ~gq~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir~~l~~~~~f~~~er~~~i~ri~~v~~~~~~~g~~ 471 (573)
T 1m8p_A 392 RATQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHELSSELGFTREDRHTNIQRIAFVATELTRAGAA 471 (573)
T ss_dssp TTTCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHHHTCTTCCCSHHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred ccccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHHHHhccccCCChhHHHHHHHHHHHHHHHHHhCCCE
Confidence 345678999999999999999999998876 557788888876321 111111 11345566678989
Q ss_pred EEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHH
Q 007244 81 VFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRS 122 (611)
Q Consensus 81 VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl 122 (611)
||+|..+..+..|..+..+ +..+ ...+|||++|.++|.+|.
T Consensus 472 VI~~~is~~~~~R~~~r~l~~~~g-~~~~V~Lda~~ev~~~R~ 513 (573)
T 1m8p_A 472 VIAAPIAPYEESRKFARDAVSQAG-SFFLVHVATPLEHCEQSD 513 (573)
T ss_dssp EEEECCCCCHHHHHHHHHHHHTTS-EEEEEEECCCHHHHHHHC
T ss_pred EEEEcCCCcHHHHHHHHHHHHhcC-CeEEEEEeCCHHHHHHHh
Confidence 9999888778888888777 5544 467899999999999995
No 102
>3gpg_A NSP3, non-structural protein 3; macro domain, X domain, alphavirus, VIZI enzymes involved in replication, ATP-binding, cell membrane endosome; 1.65A {Chikungunya virus} PDB: 3gpo_A* 3gpq_A
Probab=98.67 E-value=1.1e-09 Score=104.48 Aligned_cols=81 Identities=10% Similarity=0.040 Sum_probs=62.5
Q ss_pred cccccceeeccccccccc-ccCCCCcchhhhcccCCCCCCCccccccCccCCCCCChHHHHHHHHHHHHHHHHhcC-CeE
Q 007244 238 CLEGQEITSLLSDAAGEE-VKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLG-NAR 315 (611)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~~~~~~~SiAfPaIStGi~gfP~~~aa~Iiv~tv~~f~~~~~-~i~ 315 (611)
|.++-|.+-|.|..+... ..+.+...-.+|+.++.+++++|||||+||||+||||.++||+ +++++.+|++... .+.
T Consensus 70 ~k~VIHtVGP~~~~~~~~~~~~~L~~~y~~~L~~A~~~~~~SIAfP~IstGi~g~P~~~aa~-ai~~v~~~~~~~~~~V~ 148 (168)
T 3gpg_A 70 TYPVIHAVGPNFSNYSESEGDRELAAAYREVAKEVTRLGVNSVAIPLLSTGVYSGGKDRLTQ-SLNHLFTAMDSTDADVV 148 (168)
T ss_dssp TEEEEEECCCCTTTSCHHHHHHHHHHHHHHHHHHHHHHTCSEEEEECTTSSTTSTTSCCHHH-HC-CHHHHHTTCCSEEE
T ss_pred CCEEEEeCCCCcCCCCcchHHHHHHHHHHHHHHHHHHhCCcEEEECccccCCCCCCHHHHHH-HHHHHHHhccCCCCEEE
Confidence 889999999999763322 1234444556788999999999999999999999999999999 8899999987652 244
Q ss_pred EEEe
Q 007244 316 LVLV 319 (611)
Q Consensus 316 iV~v 319 (611)
||++
T Consensus 149 fv~f 152 (168)
T 3gpg_A 149 IYCR 152 (168)
T ss_dssp EEES
T ss_pred EEEC
Confidence 4444
No 103
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=98.66 E-value=4.4e-08 Score=109.61 Aligned_cols=104 Identities=21% Similarity=0.225 Sum_probs=78.8
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEeecchhccCC-----CCcHH------HHHHHHHHHHHCCCcEEE
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINKGK-----SGTKV------QCLTSASSALKKGKSVFL 83 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~---~~~~~Is~D~i~~~~-----~~~~~------~~~~~~~~~L~~Gk~VII 83 (611)
..+.+|+|+|+|||||||+|+.|.+.++ ..+.+++.|.++... +...+ .+...+...+..|..||+
T Consensus 370 ~~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir~~l~~~~~f~~~er~~~l~~i~~~~~~~l~~G~~VI~ 449 (546)
T 2gks_A 370 KQGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVRTHLSRGLGFSKEDRITNILRVGFVASEIVKHNGVVIC 449 (546)
T ss_dssp GCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHHHHTCTTCCSSHHHHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred ccceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhhhhhcccccccHHHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 4568999999999999999999988764 346778888875321 21111 122345567788999999
Q ss_pred ecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHH
Q 007244 84 DRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSV 123 (611)
Q Consensus 84 D~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~ 123 (611)
|.++..+..|..+..+ ... .+.+|+|++|.++|.+|+.
T Consensus 450 d~~~~~~~~r~~~~~~l~~~--d~~vV~L~~~~e~~~~Rl~ 488 (546)
T 2gks_A 450 ALVSPYRSARNQVRNMMEEG--KFIEVFVDAPVEVCEERDV 488 (546)
T ss_dssp ECCCCCHHHHHHHHTTSCTT--CEEEEEEECCGGGHHHHCC
T ss_pred EcCCCCHHHHHHHHHHhhcC--CEEEEEEeCCHHHHHHHhh
Confidence 9988888888888777 542 3578999999999999985
No 104
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=98.66 E-value=3.4e-08 Score=94.97 Aligned_cols=32 Identities=22% Similarity=0.226 Sum_probs=27.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh
Q 007244 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (611)
Q Consensus 22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i 56 (611)
+|.|+|++||||||+++.|++ ++ +.+++.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g--~~~i~~d~~ 34 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LG--AYVLDADKL 34 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TT--CEEEEHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CC--CEEEEccHH
Confidence 689999999999999999998 77 556776655
No 105
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=98.64 E-value=1.1e-07 Score=89.66 Aligned_cols=103 Identities=18% Similarity=0.195 Sum_probs=62.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCC---CeEEeecchh------ccCCCC---------cH--HHHH----HHHHHHH-
Q 007244 21 ILVIMVGAPGSGKSTFCEHVMRSSAR---PWARICQDTI------NKGKSG---------TK--VQCL----TSASSAL- 75 (611)
Q Consensus 21 ~LIvLvG~PGSGKST~A~~L~~~~~~---~~~~Is~D~i------~~~~~~---------~~--~~~~----~~~~~~L- 75 (611)
.+|+|+|+|||||||+++.|++.++. .+.+++.|.+ ++.... .. ..+. ..+...+
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~ 81 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSVEKQKKLQIDAAKGIAEEAR 81 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHTTTSCSSHHHHTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHHHHHHHhcccccchhhhhcCCHHHHHHHHHHHHHHHHHHhh
Confidence 47999999999999999999998762 2566764433 122111 11 1121 2234555
Q ss_pred -HCCCcEEEecCCCCHHH--------HHHHHHhCCCCCeEEEEEEeCCHHHHHHH-HHh--ccc
Q 007244 76 -KKGKSVFLDRCNLEREQ--------RTDFVKLGGPEVDVHAVVLDLPAKLCISR-SVK--RIE 127 (611)
Q Consensus 76 -~~Gk~VIID~tnl~~~~--------R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R-l~~--R~~ 127 (611)
..|..||+|+......+ +..+..+. .-.+|+|++|.+++++| +.. |.+
T Consensus 82 ~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~----~~~vi~l~~~~~~~~~rr~~~~~R~~ 141 (194)
T 1nks_A 82 AGGEGYLFIDTHAVIRTPSGYLPGLPSYVITEIN----PSVIFLLEADPKIILSRQKRDTTRNR 141 (194)
T ss_dssp HTCSSEEEEEECSEEEETTEEEESSCHHHHHHHC----CSEEEEEECCHHHHHHHHHHCTTTCC
T ss_pred ccCCCEEEECCchhhccccccccCCCHHHHHhcC----CCEEEEEeCCHHHHHHHHHhhcccCC
Confidence 67889999984211000 11111121 12488999999998866 766 643
No 106
>1vhu_A Hypothetical protein AF1521; structural genomics, unknown function; HET: MSE MES; 1.34A {Archaeoglobus fulgidus} SCOP: c.50.1.2 PDB: 2bfq_A* 1hjz_A* 2bfr_A*
Probab=98.63 E-value=5.1e-09 Score=103.46 Aligned_cols=88 Identities=16% Similarity=0.131 Sum_probs=68.1
Q ss_pred ccccccccc---ccccceeec----ccccccccccCCCCcchhhhcccCCCCCCCccccccCccCCCCCChHHHHHHHHH
Q 007244 230 QITEEKNSC---LEGQEITSL----LSDAAGEEVKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIE 302 (611)
Q Consensus 230 ~~~~~~~~~---~~~~~~~~~----~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~SiAfPaIStGi~gfP~~~aa~Iiv~ 302 (611)
.|.+.++.+ .++-|.+.| .|+. ...+.+...-.+|+..|.+++++|||||+||||+||||.++||+++++
T Consensus 91 iT~~~~L~~~g~k~VIH~vgP~~~~~~~~---~~~~~L~~~y~~~L~~A~~~~i~SIAfP~IstG~~G~p~~~aa~i~~~ 167 (211)
T 1vhu_A 91 VTPAMNLEERGIKYVFHTVGPICSGMWSE---ELKEKLYKAFLGPLEKAEEMGVESIAFPAVSAGIYGCDLEKVVETFLE 167 (211)
T ss_dssp EEECGGGGGGTCCEEEEEECCCCTTCCCH---HHHHHHHHHHHHHHHHHHHHTCCEEEECCTTSSTTCCCHHHHHHHHHH
T ss_pred EEECCCCCccCcCEEEEecCCccccccCc---chHHHHHHHHHHHHHHHHHcCCCEEEeccccCCCCCCCHHHHHHHHHH
Confidence 366778888 899999999 7742 222334445667889999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCeEEEEeec
Q 007244 303 KVEEFVNKLGNARLVLVDL 321 (611)
Q Consensus 303 tv~~f~~~~~~i~iV~vd~ 321 (611)
++++|+ +++...++++.+
T Consensus 168 ~v~~~l-~~~l~~V~~v~~ 185 (211)
T 1vhu_A 168 AVKNFK-GSAVKEVALVIY 185 (211)
T ss_dssp HHHHCC-CSSCCEEEEEES
T ss_pred HHHHHH-hCCCCEEEEEEC
Confidence 999999 443224444433
No 107
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.62 E-value=1.8e-08 Score=95.84 Aligned_cols=132 Identities=11% Similarity=0.209 Sum_probs=73.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcCCC---------------------eEEeecchhc----cCCCCcHHH-------
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSSARP---------------------WARICQDTIN----KGKSGTKVQ------- 66 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~---------------------~~~Is~D~i~----~~~~~~~~~------- 66 (611)
+..+++|+||+||||||+++.|...+... +..++.+.+. .+.+..+..
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~n~yg 83 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQDISNNEYLEYGSHEDAMYG 83 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccccCCCeeEEeCHHHHHHHHHcCCceEEEEEcCcccc
Confidence 45699999999999999999999875421 1112211111 111111000
Q ss_pred -HHHHHHHHHHCCCcEEEecCCCCHHHHHHHHHhCCCCCeEEEEEEeCC-HHHHHHHHHhcccccCCCCCCCHHHHHHHH
Q 007244 67 -CLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLP-AKLCISRSVKRIEHEGNLQGGKAAAVVNRM 144 (611)
Q Consensus 67 -~~~~~~~~L~~Gk~VIID~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p-~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm 144 (611)
-...+.+.+..|+.+|+|. +++.+..++.......+||+.+| .+++.+| ++.++|+
T Consensus 84 ~~~~~i~~~l~~g~~vil~i------d~~g~~~~~~~~~~~~~ifi~~p~~~~l~~R----------------~~~i~r~ 141 (180)
T 1kgd_A 84 TKLETIRKIHEQGLIAILDV------EPQALKVLRTAEFAPFVVFIAAPTITPGLNE----------------DESLQRL 141 (180)
T ss_dssp EEHHHHHHHHHTTCEEEEEC------CGGGHHHHSSTTTCEEEEEEECCSCCTTSCC----------------SHHHHHH
T ss_pred ccHHHHHHHHHCCCeEEEEE------CHHHHHHHHHhCCCcEEEEEECCCHHHHHhh----------------HHHHHHH
Confidence 0145678889999999996 33444445222234567777766 4544433 1233566
Q ss_pred HhhccCC--CccCCccEEEEcCChhhHHHHHHH
Q 007244 145 LQKKELP--KLSEGFSRITLCQNENDVQAALDT 175 (611)
Q Consensus 145 ~~~~e~P--~~~EgFd~V~vv~~~~evd~av~~ 175 (611)
.+...+. .....||.+++++ +++.+...
T Consensus 142 ~~~~~~~~~~~~~~~d~~i~n~---~~~~~~~~ 171 (180)
T 1kgd_A 142 QKESDILQRTYAHYFDLTIINN---EIDETIRH 171 (180)
T ss_dssp HHHHHHHHHHHGGGCSEEEECS---SHHHHHHH
T ss_pred HHHHHHHHHhhhCCCcEEEECc---CHHHHHHH
Confidence 5543222 2345688887664 35554443
No 108
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.61 E-value=1.7e-07 Score=88.80 Aligned_cols=125 Identities=22% Similarity=0.232 Sum_probs=77.1
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhcc--------CCCCc----HHHHH----HHHHHHHHCCCc
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK--------GKSGT----KVQCL----TSASSALKKGKS 80 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~--------~~~~~----~~~~~----~~~~~~L~~Gk~ 80 (611)
-.++.+|+|+|+|||||||+++.|+...+...+.++.|.+.. +.... ...+. ..+......|..
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~ 85 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNRMIMQIAADVAGRYAKEGYF 85 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHHTCCSSCCCTTSSSHHHHHHHHHHHHHHHHHHHHHTSCE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccchhhhhhcccccCCccchhhhhHHHHHHHHHHHHHHhccCCe
Confidence 456789999999999999999999887655566788776631 11111 11111 122233456677
Q ss_pred EEEecCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhccC
Q 007244 81 VFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKEL 150 (611)
Q Consensus 81 VIID~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~e~ 150 (611)
+++|.. +....+..+..+ +..+..+++.++.+++++|+..|..+- ....+.+..+.+.+..
T Consensus 86 ~~~~~~-~~~~~l~~~~~~---~~~~~~ls~~~~~~v~~~R~~~r~~~~-----lld~~~~~~~~~~~~~ 146 (191)
T 1zp6_A 86 VILDGV-VRPDWLPAFTAL---ARPLHYIVLRTTAAEAIERCLDRGGDS-----LSDPLVVADLHSQFAD 146 (191)
T ss_dssp EEECSC-CCTTTTHHHHTT---CSCEEEEEEECCHHHHHHHHHTTCTTS-----CCCHHHHHHHHHHTTC
T ss_pred EEEecc-CcHHHHHHHHhc---CCCeEEEEecCCHHHHHHHHHhcCCCc-----cCCHHHHHHHHHHHhc
Confidence 888884 332233333221 334567899999999999999985421 1223455556655543
No 109
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.61 E-value=3.5e-08 Score=95.23 Aligned_cols=110 Identities=15% Similarity=0.147 Sum_probs=62.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccC-------------------CC-----CcHHH---------
Q 007244 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKG-------------------KS-----GTKVQ--------- 66 (611)
Q Consensus 20 p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~-------------------~~-----~~~~~--------- 66 (611)
+.+|.|+|+|||||||+++.|++ ++ +.+++.|.+... .+ ..+..
T Consensus 2 ~~~i~l~G~~GsGKST~~~~La~-lg--~~~id~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~ 78 (206)
T 1jjv_A 2 TYIVGLTGGIGSGKTTIANLFTD-LG--VPLVDADVVAREVVAKDSPLLSKIVEHFGAQILTEQGELNRAALRERVFNHD 78 (206)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHT-TT--CCEEEHHHHHHHTTCSSCHHHHHHHHHHCTTCC------CHHHHHHHHHTCH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH-CC--CcccchHHHHHHHccCChHHHHHHHHHhCHHHhccCccccHHHHHHHHhCCH
Confidence 46899999999999999999977 77 445777765210 00 00000
Q ss_pred -------------HHHHHHHHHH--CCCcEEEecCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCC
Q 007244 67 -------------CLTSASSALK--KGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGN 131 (611)
Q Consensus 67 -------------~~~~~~~~L~--~Gk~VIID~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~ 131 (611)
....+.+.+. .+..+|+|+..+... . +.. ..+ .+|++++|.+++.+|+.+|..
T Consensus 79 ~~~~~l~~~~~p~v~~~~~~~~~~~~~~~vv~~~~~l~e~-~--~~~--~~d---~vi~l~~~~e~~~~Rl~~R~~---- 146 (206)
T 1jjv_A 79 EDKLWLNNLLHPAIRERMKQKLAEQTAPYTLFVVPLLIEN-K--LTA--LCD---RILVVDVSPQTQLARSAQRDN---- 146 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCSSEEEEECTTTTTT-T--CGG--GCS---EEEEEECCHHHHHHHHC--------
T ss_pred HHHHHHHhccCHHHHHHHHHHHHhcCCCEEEEEechhhhc-C--cHh--hCC---EEEEEECCHHHHHHHHHHcCC----
Confidence 0011112232 355788887322221 1 211 122 388999999999999998853
Q ss_pred CCCCCHHHHHHHHHhh
Q 007244 132 LQGGKAAAVVNRMLQK 147 (611)
Q Consensus 132 ~~~~vpeevi~rm~~~ 147 (611)
...+++..++..+
T Consensus 147 ---~~~e~~~~r~~~q 159 (206)
T 1jjv_A 147 ---NNFEQIQRIMNSQ 159 (206)
T ss_dssp ----CHHHHHHHHHHS
T ss_pred ---CCHHHHHHHHHhc
Confidence 2345566666654
No 110
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.60 E-value=2.3e-07 Score=89.86 Aligned_cols=134 Identities=12% Similarity=0.141 Sum_probs=76.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcCC---------------------CeEEeecchhcc----CCCCcH----HH---
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSSAR---------------------PWARICQDTINK----GKSGTK----VQ--- 66 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~---------------------~~~~Is~D~i~~----~~~~~~----~~--- 66 (611)
++.+++|+||+||||||+++.|...+.. .+..++.+.++. +.+..+ ..
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~~~g~~~~~~~~~~~~~~i~~~~~l~~~~~~~n~~g 82 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFVTREMMQRDIAAGDFIEHAEFSGNLYG 82 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEEEETTEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcccCCceEEEccHHHHHHHHHcCCCEeeeeecCccCC
Confidence 3467999999999999999999875431 122222221110 000000 00
Q ss_pred -HHHHHHHHHHCCCcEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHH
Q 007244 67 -CLTSASSALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRM 144 (611)
Q Consensus 67 -~~~~~~~~L~~Gk~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm 144 (611)
-...+.++++.+..+++|. ....+..+ ........+++.+++..++.+|+..|.. +..+.+..++
T Consensus 83 ~~~~~i~~~~~~~~~~~~~~------~~~g~~~~~~~~~~~~~~~l~~p~~~ilde~~~~~d~-------~~e~~i~~~l 149 (198)
T 1lvg_A 83 TSKEAVRAVQAMNRICVLDV------DLQGVRSIKKTDLCPIYIFVQPPSLDVLEQRLRLRNT-------ETEESLAKRL 149 (198)
T ss_dssp EEHHHHHHHHHTTCEEEEEC------CHHHHHHHTTSSCCCEEEEEECSCHHHHHHHHHHHTC-------SCHHHHHHHH
T ss_pred CCHHHHHHHHHcCCcEEEEC------CHHHHHHHHhcCCCcEEEEEeCCCHHHHHHHHHhcCC-------CCHHHHHHHH
Confidence 0145667778888888775 23344444 2222222344445668999999998876 4566666666
Q ss_pred HhhccCCCcc---CCccEEEEcCC
Q 007244 145 LQKKELPKLS---EGFSRITLCQN 165 (611)
Q Consensus 145 ~~~~e~P~~~---EgFd~V~vv~~ 165 (611)
.......... ..||+|+++++
T Consensus 150 ~~~~~~~~~a~~~~~~D~iivnd~ 173 (198)
T 1lvg_A 150 AAARTDMESSKEPGLFDLVIINDD 173 (198)
T ss_dssp HHHHHHTTGGGSTTTCSEEEECSS
T ss_pred HHHHHHHHHhhccCCceEEEECCC
Confidence 5543222222 67899988864
No 111
>2acf_A Replicase polyprotein 1AB; ADRP domain, SARS NSP-3, APPR-1-P phosphatase, structural GE joint center for structural genomics, JCSG; 1.40A {Sars coronavirus TOR2} SCOP: c.50.1.2 PDB: 2fav_A*
Probab=98.60 E-value=1.6e-08 Score=97.76 Aligned_cols=85 Identities=13% Similarity=0.086 Sum_probs=61.1
Q ss_pred ccccccccccccceeecccccccccccCCCCcchhhhcccCCCCCCCccccccCccCCCCCChHHHHHHHHHHHHHHHHh
Q 007244 231 ITEEKNSCLEGQEITSLLSDAAGEEVKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNK 310 (611)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~SiAfPaIStGi~gfP~~~aa~Iiv~tv~~f~~~ 310 (611)
|.+.++ +.++-|.+.|.|.. .. ....-.+|+..+ ++++|||||+||||+||||.++||+++++++.+
T Consensus 89 T~~~~L-~~~VIH~vgP~~~~--~~----~~~~L~~~y~~~--~~~~SIAfP~IstGi~G~p~~~aa~i~~~~v~~---- 155 (182)
T 2acf_A 89 LSGHNL-AKKCLHVVGPNLNA--GE----DIQLLKAAYENF--NSQDILLAPLLSAGIFGAKPLQSLQVCVQTVRT---- 155 (182)
T ss_dssp EECTTT-CSEEEEECCCCGGG--TC----CTTHHHHHHHGG--GGSSEEEECCTTCGGGCCCHHHHHHHHHHHCCS----
T ss_pred eeCCCC-CceEEEECCCCCCC--Cc----hHHHHHHHHHHh--cCCCEEEECCcccCCCCCCHHHHHHHHHHHHhC----
Confidence 445555 45788988888864 21 222334455543 799999999999999999999999999999975
Q ss_pred cCCeEEEEeecCcchhhhhh
Q 007244 311 LGNARLVLVDLTQGSKILSL 330 (611)
Q Consensus 311 ~~~i~iV~vd~s~~s~~Ls~ 330 (611)
.+.+|..|...|...|..
T Consensus 156 --~V~~v~~d~~~y~~~l~~ 173 (182)
T 2acf_A 156 --QVYIAVNDKALYEQVVMD 173 (182)
T ss_dssp --EEEEEESCHHHHHHHHHH
T ss_pred --cEEEEECCHHHHHHHHHH
Confidence 466666665556665543
No 112
>3gqe_A Non-structural protein 3; macro domain, X domain, venezuelan equine encephalitis virus alphavirus; HET: BCN; 2.30A {Venezuelan equine encephalitis virus} PDB: 3gqo_A*
Probab=98.58 E-value=5.3e-09 Score=99.81 Aligned_cols=86 Identities=12% Similarity=0.036 Sum_probs=59.6
Q ss_pred cccccceeeccccccccc-ccCCCCcchhhhcccCCCCCCCccccccCccCCCCCChHHHHHHHHHHHHHHHHhcCCeEE
Q 007244 238 CLEGQEITSLLSDAAGEE-VKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGNARL 316 (611)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~~~~~~~SiAfPaIStGi~gfP~~~aa~Iiv~tv~~f~~~~~~i~i 316 (611)
+.++-|.+-|.|..+... ..+.+...-.+|+.++.+++++|||||+||||+||||.++|++++.+..+.+-.....+.|
T Consensus 64 ~k~VIH~VgP~~~~~~~~~~~~~L~~~y~~~L~~a~~~~~~SIAfP~IstG~~g~p~~~aa~~i~~~l~~~~~~~~~V~i 143 (168)
T 3gqe_A 64 AKHIIHAVGPNFNKVSEVEGDKQLAEAYESIAKIVNDNNYKSVAIPLLSTGIFSGNKDRLTQSLNHLLTALDTTDADVAI 143 (168)
T ss_dssp TCCEEEEECCCTTTSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECTTSSTTSCSSCCHHHHHHHHHHHHTTSCCEEEE
T ss_pred CCEEEEcCCCccCCCCchhHHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCHHHHHHHHHHHHHHCCCCCCeEEE
Confidence 889999999998763321 1234444566788999999999999999999999999999999654333222111112555
Q ss_pred EEeecCc
Q 007244 317 VLVDLTQ 323 (611)
Q Consensus 317 V~vd~s~ 323 (611)
|++|...
T Consensus 144 v~fd~~~ 150 (168)
T 3gqe_A 144 YCRDKKW 150 (168)
T ss_dssp EESCHHH
T ss_pred EEcCHHH
Confidence 5554443
No 113
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=98.58 E-value=3.2e-08 Score=94.55 Aligned_cols=37 Identities=24% Similarity=0.323 Sum_probs=30.5
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i 56 (611)
..++.+|.|+|++||||||+++.|++. + +.+++.|.+
T Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~La~~-g--~~~id~d~~ 41 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTVAALLRSW-G--YPVLDLDAL 41 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHHHHHHHHT-T--CCEEEHHHH
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHC-C--CEEEcccHH
Confidence 456789999999999999999999987 6 445777765
No 114
>3eti_A X (ADRP) domain, macro domain of non-structural protein 3; coronavirus, X domain, RNA binding protein; 2.20A {Feline infectious peritonitis virus} PDB: 3ew5_A* 3jzt_A*
Probab=98.58 E-value=1.3e-08 Score=97.14 Aligned_cols=109 Identities=12% Similarity=0.050 Sum_probs=73.4
Q ss_pred CCchhhhhhHHHHHHhhcCCC-CCCCCCCCCCCCCCCcccccccccccccceeecccccccccccCCCCcchhhhcccCC
Q 007244 194 NPDAKIQLGIMKFLKKVDAPS-NTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGEEVKGTENPEVASVNQNGS 272 (611)
Q Consensus 194 ~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 272 (611)
......++.|++..+++-... ....++. . .|.++ +.+.++-|.+-|.|.. ....+.+...-.+|+..
T Consensus 48 AI~~aaG~~l~~ec~~~~~~~g~~~~G~a-----~--iT~g~-l~~~~VIHtVgP~~~~--~~~~~~L~~~y~~~L~~-- 115 (168)
T 3eti_A 48 AIDVFTGGKLTKRSKEYLKSSKAIAPGNA-----V--LFENV-LEHLSVMNAVGPRNGD--SRVEGKLCNVYKAIAKC-- 115 (168)
T ss_dssp HHHHHTTTHHHHHHHHHHTTSCCCCTTEE-----E--EEEEE-ETTEEEEEEECCCTTS--TTHHHHHHHHHHHHHTS--
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCE-----E--EecCC-CCccEEEEecCCCCCc--chHHHHHHHHHHHHHHh--
Confidence 455666888888887763311 1111221 1 35666 8889999999999864 32222333333344443
Q ss_pred CCCCCccccccCccCCCCCChHHHHHHHHHHHHHHHHhcCCeEEEEeecC
Q 007244 273 SSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGNARLVLVDLT 322 (611)
Q Consensus 273 ~~~~~SiAfPaIStGi~gfP~~~aa~Iiv~tv~~f~~~~~~i~iV~vd~s 322 (611)
.+|||||+||||+||||.++||+++++++++ ..+.+++++..
T Consensus 116 ---~~SIAfP~IstG~~g~P~~~aa~i~~~~v~~-----~~V~~v~f~~~ 157 (168)
T 3eti_A 116 ---DGKILTPLISVGIFKVKLEVSLQCLLKTVTD-----RDLNVFVYTDQ 157 (168)
T ss_dssp ---CSCEEECCTTBSTTCBCHHHHHHHHHHHCCS-----SCEEEEECCHH
T ss_pred ---cCceeecccccCCCCCCHHHHHHHHHHHHhc-----CeEEEEEcCHH
Confidence 3799999999999999999999999999976 45666665433
No 115
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=98.57 E-value=2.4e-07 Score=87.29 Aligned_cols=105 Identities=15% Similarity=0.222 Sum_probs=60.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCC---eEEeecchh-c-----cCCC------C--cH--HH-HHHHH---HHHHH
Q 007244 20 QILVIMVGAPGSGKSTFCEHVMRSSARP---WARICQDTI-N-----KGKS------G--TK--VQ-CLTSA---SSALK 76 (611)
Q Consensus 20 p~LIvLvG~PGSGKST~A~~L~~~~~~~---~~~Is~D~i-~-----~~~~------~--~~--~~-~~~~~---~~~L~ 76 (611)
+.+|+|+|+|||||||+++.|++.++.. +.+++.|.+ + .+.. . .. .. +...+ ...+.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 82 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDRDQMRKMDPETQKRIQKMAGRKIAEMA 82 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHHHHHTTSCSSGGGGSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHHHHHHHhccCCCCCHHHHhcCCHHHHHHHHHHHHHHHHhhc
Confidence 4689999999999999999999987621 445665432 1 1110 0 01 11 11112 12234
Q ss_pred CCCcEEEecCCCCHHHHH-------HHHHhCCCCCeEEEEEEeCCHHHHHH-HHHh--ccc
Q 007244 77 KGKSVFLDRCNLEREQRT-------DFVKLGGPEVDVHAVVLDLPAKLCIS-RSVK--RIE 127 (611)
Q Consensus 77 ~Gk~VIID~tnl~~~~R~-------~~~~l~~~~~~v~vV~Ld~p~e~~~~-Rl~~--R~~ 127 (611)
.+..||+|+......... .++.-... . .+|||++|.+++.+ |+.. |.+
T Consensus 83 ~~~~viid~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~i~l~~~~~~~~~rRl~~~~R~r 140 (192)
T 1kht_A 83 KESPVAVDTHSTVSTPKGYLPGLPSWVLNELNP--D-LIIVVETTGDEILMRRMSDETRVR 140 (192)
T ss_dssp TTSCEEEECCSEEEETTEEEESSCHHHHHHHCC--S-EEEEEECCHHHHHHHHHTSSSCSS
T ss_pred cCCeEEEccceeccccccccccCcHHHHhccCC--C-EEEEEeCCHHHHHHHHhhhcccCC
Confidence 567899998442110000 11111011 2 38999999999996 8977 643
No 116
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=98.57 E-value=3.4e-08 Score=92.97 Aligned_cols=96 Identities=14% Similarity=0.069 Sum_probs=60.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCC-----------c--HHHHHHHHHHHHHCCCcEEEecCCC
Q 007244 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG-----------T--KVQCLTSASSALKKGKSVFLDRCNL 88 (611)
Q Consensus 22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~-----------~--~~~~~~~~~~~L~~Gk~VIID~tnl 88 (611)
.|+|+|+|||||||+|+.|++.++ +.+++.|.+.....+ . .......+.+.+.....+||+....
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~--~~~~d~d~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~vi~~g~~ 83 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD--LVFLDSDFLIEQKFNQKVSEIFEQKRENFFREQEQKMADFFSSCEKACIATGGG 83 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT--CEEEEHHHHHHHHHTSCHHHHHHHHCHHHHHHHHHHHHHHHTTCCSEEEECCTT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC--CCEEcccHHHHHHcCCCHHHHHHHcCHHHHHHHHHHHHHHHHccCCEEEECCCC
Confidence 589999999999999999999998 556888876421111 0 0111123334455556677773211
Q ss_pred CHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcc
Q 007244 89 EREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRI 126 (611)
Q Consensus 89 ~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~ 126 (611)
....+. ++..+ .+|||++|.+++.+|+.+|.
T Consensus 84 ~~~~~~----l~~~~---~~i~l~~~~e~~~~R~~~r~ 114 (175)
T 1via_A 84 FVNVSN----LEKAG---FCIYLKADFEYLKKRLDKDE 114 (175)
T ss_dssp GGGSTT----GGGGC---EEEEEECCHHHHTTCCCGGG
T ss_pred EehhhH----HhcCC---EEEEEeCCHHHHHHHHhccc
Confidence 110111 32222 48899999999999998874
No 117
>1njr_A 32.1 kDa protein in ADH3-RCA1 intergenic region; structural genomics, dimer, two domain organization, PSI, PR structure initiative; HET: XYL; 1.90A {Saccharomyces cerevisiae} SCOP: c.50.1.2 PDB: 1txz_A* 1ty8_A*
Probab=98.56 E-value=1.7e-08 Score=103.76 Aligned_cols=77 Identities=8% Similarity=-0.019 Sum_probs=61.8
Q ss_pred ccccccccceeecccccccc--------cccCCCCcchhhhcccCCCCCCCccccccCccCCCCCChHHHHHHHHHHHHH
Q 007244 235 KNSCLEGQEITSLLSDAAGE--------EVKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEE 306 (611)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~s~~~~~~~~~~~SiAfPaIStGi~gfP~~~aa~Iiv~tv~~ 306 (611)
++.|.++-|.+.|.|+.... ...+.....-.+|+..+ +++++|||||+||||+||||.++||+++++++++
T Consensus 137 ~L~~k~VIHtvgp~~~~~~~~d~~~p~~~~~~~L~~~~~~~L~~a-e~~i~SIAfPaIsTGv~G~P~~~aA~i~~~av~~ 215 (284)
T 1njr_A 137 RDGIRYIIHVPTVVAPSAPIFNPQNPLKTGFEPVFNAMWNALMHS-PKDIDGLIIPGLCTGYAGVPPIISCKSMAFALRL 215 (284)
T ss_dssp CTTEEEEEECCCBSCSSSCSCCTTCHHHHTHHHHHHHHHHHHHTS-CTTCSEEEECCTTCSTTCCCHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEeCCCccCCCCCcccccccccHHHHHHHHHHHHHHHH-HhCCCEEEECcccccCCCCCHHHHHHHHHHHHHH
Confidence 88999999999998875210 01112222345778888 9999999999999999999999999999999999
Q ss_pred HHHhcC
Q 007244 307 FVNKLG 312 (611)
Q Consensus 307 f~~~~~ 312 (611)
|+.+++
T Consensus 216 f~~~~~ 221 (284)
T 1njr_A 216 YMAGDH 221 (284)
T ss_dssp HHTGGG
T ss_pred HHHhCC
Confidence 998765
No 118
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.56 E-value=9.8e-08 Score=93.31 Aligned_cols=93 Identities=11% Similarity=0.121 Sum_probs=57.5
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCe---------------------EEeecchh----ccCCCCcHHH-----
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPW---------------------ARICQDTI----NKGKSGTKVQ----- 66 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~---------------------~~Is~D~i----~~~~~~~~~~----- 66 (611)
.-++.+|+|+||+||||||+++.|.+.++..+ ..++.+.+ ..+.+..+..
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE~~G~~y~fvs~~~f~~~i~~~~fle~~~~~~n~ 95 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSEEDGKEYHFISTEEMTRNISANEFLEFGSYQGNM 95 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTCCTTSSCEECCHHHHHHHHHTTCEEEEEEETTEE
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCeeccccceeccHHHhhhhhhhhhhhhhhhhhcee
Confidence 34567999999999999999999998765211 11221111 1111111110
Q ss_pred ---HHHHHHHHHHCCCcEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCH
Q 007244 67 ---CLTSASSALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPA 115 (611)
Q Consensus 67 ---~~~~~~~~L~~Gk~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~ 115 (611)
-...+.+.+..|+.+|+|. +++....+ +.....+.+++.+++.
T Consensus 96 YGt~~~~v~~~l~~G~~vildi------d~qg~~~~~~~~~~~~~Ifi~Pps~ 142 (197)
T 3ney_A 96 FGTKFETVHQIHKQNKIAILDI------EPQTLKIVRTAELSPFIVFIAPTDQ 142 (197)
T ss_dssp EEEEHHHHHHHHHTTCEEEEEC------CGGGHHHHCSTTTCEEEEEEEECCB
T ss_pred cccchhhHHHHHhcCCeEEEEE------CHHHHHHHHhcCCCceEEEEeCCCc
Confidence 0145788999999999999 67777666 4444444444445544
No 119
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.55 E-value=2.3e-07 Score=89.61 Aligned_cols=104 Identities=16% Similarity=0.176 Sum_probs=67.6
Q ss_pred ccCCCcEEEEEEcCCCCcHHHHHHHHHHHc-CCCeEEeecchhccC---------CCC--------cHHHHHHHHHHHHH
Q 007244 15 EKKWKQILVIMVGAPGSGKSTFCEHVMRSS-ARPWARICQDTINKG---------KSG--------TKVQCLTSASSALK 76 (611)
Q Consensus 15 ~~~~~p~LIvLvG~PGSGKST~A~~L~~~~-~~~~~~Is~D~i~~~---------~~~--------~~~~~~~~~~~~L~ 76 (611)
+..+++.+|.|+|+|||||||+++.|.+.+ + +.++++|.+... .+. ....+...+...+.
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~~--~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~ 93 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLPN--CSVISQDDFFKPESEIETDKNGFLQYDVLEALNMEKMMSAISCWME 93 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTSTT--EEEEEGGGGBCCGGGSCBCTTSCBCCSSGGGBCHHHHHHHHHHHHH
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhcCC--cEEEeCCccccCHhHhhccccCCChhHHHHHhHHHHHHHHHHHHHh
Confidence 455667899999999999999999998876 4 667888776311 011 11223333444333
Q ss_pred ---------------CCCcEEEecCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244 77 ---------------KGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (611)
Q Consensus 77 ---------------~Gk~VIID~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~ 127 (611)
....+|+|+..... . ..+. ...+ .++++++|.+++.+|+..|..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~vi~eg~~~~~-~-~~~~--~~~d---~~i~l~~~~~~~~~R~~~R~~ 152 (207)
T 2qt1_A 94 SARHSVVSTDQESAEEIPILIIEGFLLFN-Y-KPLD--TIWN---RSYFLTIPYEECKRRRSTRVY 152 (207)
T ss_dssp HHTTSSCCC-----CCCCEEEEECTTCTT-C-GGGT--TTCS---EEEEEECCHHHHHHHHHHSCC
T ss_pred CCCCCCcCCCeeecCCCCEEEEeehHHcC-c-HHHH--HhcC---eeEEEECCHHHHHHHHHHcCC
Confidence 24578999954331 1 1111 2222 488999999999999988853
No 120
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=98.55 E-value=4.7e-07 Score=86.56 Aligned_cols=102 Identities=19% Similarity=0.214 Sum_probs=58.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHc-CCCeEEeecch------------hccC-CCCcH-HHH---------HHHHHHH
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSS-ARPWARICQDT------------INKG-KSGTK-VQC---------LTSASSA 74 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~-~~~~~~Is~D~------------i~~~-~~~~~-~~~---------~~~~~~~ 74 (611)
++.+|+|+|+|||||||+++.|++.+ +..+..+.... +..+ .+... ..+ ...+...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~l~~~~r~~~~~~i~~~ 82 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNFPQRSTVTGKMIDDYLTRKKTYNDHIVNLLFCANRWEFASFIQEQ 82 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEESSCTTSHHHHHHHHHHTSSCCCCHHHHHHHHHHHHHTTHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEecCCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999987 33343332111 1111 11111 111 1234556
Q ss_pred HHCCCcEEEecCCCCHHH--------HHHHHHh-CCCCCeEEEEEEeCCHHHHHH
Q 007244 75 LKKGKSVFLDRCNLEREQ--------RTDFVKL-GGPEVDVHAVVLDLPAKLCIS 120 (611)
Q Consensus 75 L~~Gk~VIID~tnl~~~~--------R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~ 120 (611)
+..|..||+|........ +..+..+ ......-.+|+|++|.+++.+
T Consensus 83 l~~~~~vi~Dr~~~s~~~~~~~~g~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~ 137 (204)
T 2v54_A 83 LEQGITLIVDRYAFSGVAYAAAKGASMTLSKSYESGLPKPDLVIFLESGSKEINR 137 (204)
T ss_dssp HHTTCEEEEESCHHHHHHHHHHTTCCHHHHHHHHTTSBCCSEEEEECCCHHHHTT
T ss_pred HHCCCEEEEECchhhHHHHHHccCCCHHHHHHHhcCCCCCCEEEEEeCCHHHHHh
Confidence 778889999974432110 1112222 221122248899999999887
No 121
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=98.53 E-value=2.7e-07 Score=87.91 Aligned_cols=103 Identities=20% Similarity=0.167 Sum_probs=57.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecc--------hhccCCC-CcH-HHH------HHHHHHHHHCCCcEEEec
Q 007244 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQD--------TINKGKS-GTK-VQC------LTSASSALKKGKSVFLDR 85 (611)
Q Consensus 22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D--------~i~~~~~-~~~-~~~------~~~~~~~L~~Gk~VIID~ 85 (611)
+|+|.|+|||||||+++.|++.++..+ +... .+..+.. ... .+. ...+...+..|. +|+|.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-vi~d~ 78 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEI--FKEPVEENPYFEQYYKDLKKTVFKMQIYMLTARSKQLKQAKNLEN-IIFDR 78 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEE--ECCCGGGCTTHHHHTTCHHHHHHHHHHHHHHHHHHHHC------C-EEEES
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcE--EcccccccHHHHHHHhCccccchhHHHHHHHHHHHHHHHhhccCC-EEEEe
Confidence 689999999999999999999988433 3211 1100000 000 000 122233445554 99999
Q ss_pred CCCCHHH---------------HHH---HHH-h-CCC-------CCeEEEEEEeCCHHHHHHHHHhccc
Q 007244 86 CNLEREQ---------------RTD---FVK-L-GGP-------EVDVHAVVLDLPAKLCISRSVKRIE 127 (611)
Q Consensus 86 tnl~~~~---------------R~~---~~~-l-~~~-------~~~v~vV~Ld~p~e~~~~Rl~~R~~ 127 (611)
+...... +.. +.. . ... ...-.+|+|++|.+++.+|+.+|++
T Consensus 79 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~L~~~~e~~~~Rl~~R~r 147 (205)
T 2jaq_A 79 TLLEDPIFMKVNYDLNNVDQTDYNTYIDFYNNVVLENLKIPENKLSFDIVIYLRVSTKTAISRIKKRGR 147 (205)
T ss_dssp CTTTHHHHHHHHHHTTSSCHHHHHHHHHHHHHTTTTC------CCCCSEEEEEECCHHHHHHHHHHHTC
T ss_pred ccchhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhcccccCCCCCEEEEEeCCHHHHHHHHHHcCC
Confidence 7664211 111 111 1 111 2223689999999999999988853
No 122
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=98.53 E-value=4.9e-07 Score=89.12 Aligned_cols=153 Identities=14% Similarity=0.136 Sum_probs=83.4
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcCC---CeEEeec-----------chhccCC---CCcHHH-----------HHHH
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSSAR---PWARICQ-----------DTINKGK---SGTKVQ-----------CLTS 70 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~---~~~~Is~-----------D~i~~~~---~~~~~~-----------~~~~ 70 (611)
++.+|+|.|++||||||+++.|.+.+.. ....... +.+.++. ...+.. +...
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~~p~~~~~g~~i~~~l~~~~~~~~~~~~~~llf~a~R~~~~~~~ 84 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTREPGGTPLAERIRELLLAPSDEPMAADTELLLMFAARAQHLAGV 84 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEESSCSSHHHHHHHHHHHSCCSSCCCHHHHHHHHHHHHHHHHHHT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3679999999999999999999887642 2222210 1112221 111111 1234
Q ss_pred HHHHHHCCCcEEEecCCC------------CHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCH
Q 007244 71 ASSALKKGKSVFLDRCNL------------EREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKA 137 (611)
Q Consensus 71 ~~~~L~~Gk~VIID~tnl------------~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vp 137 (611)
+..+|..|..||.|.... .......+... .....+-.+|+|++|.+++.+|+.+|.... +.....
T Consensus 85 i~p~l~~g~~Vi~DRy~~S~~ayq~~~~g~~~~~~~~l~~~~~~~~~PDlvi~Ld~~~e~~~~Ri~~R~~~d--r~E~~~ 162 (213)
T 4edh_A 85 IRPALARGAVVLCDRFTDATYAYQGGGRGLPEARIAALESFVQGDLRPDLTLVFDLPVEIGLARAAARGRLD--RFEQED 162 (213)
T ss_dssp HHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHCCCSSCC--TTTTSC
T ss_pred HHHHHHCCCEEEECccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCcC--cccccH
Confidence 566888999999998321 12222222222 122234468999999999999999985311 111112
Q ss_pred HHHHHHHHhhccCCCccCCccEEEEcCChhhHHHHHH
Q 007244 138 AAVVNRMLQKKELPKLSEGFSRITLCQNENDVQAALD 174 (611)
Q Consensus 138 eevi~rm~~~~e~P~~~EgFd~V~vv~~~~evd~av~ 174 (611)
.+.+++....+......+. .++++++....++++..
T Consensus 163 ~~~~~rv~~~y~~l~~~~~-~~~~vIDa~~s~eeV~~ 198 (213)
T 4edh_A 163 RRFFEAVRQTYLQRAAQAP-ERYQVLDAGLPLAEVQA 198 (213)
T ss_dssp HHHHHHHHHHHHHHHHHCT-TTEEEEETTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCC-CcEEEEeCCCCHHHHHH
Confidence 4455555544432211111 13455554455555544
No 123
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.48 E-value=8.1e-07 Score=88.36 Aligned_cols=104 Identities=19% Similarity=0.279 Sum_probs=66.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh-cc------------------CCCCcHHHHHHHHHHHHH--C
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-NK------------------GKSGTKVQCLTSASSALK--K 77 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i-~~------------------~~~~~~~~~~~~~~~~L~--~ 77 (611)
+|.+|+|+|+|||||||+++.|++.++... ++.+.+ .+ +.......+.+.+...+. .
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~--~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~~ 103 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQH--LSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENRR 103 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCC--EEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTCT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeE--ecHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Confidence 468999999999999999999999988443 444332 11 111122223334444444 4
Q ss_pred CCcEEEecCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244 78 GKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (611)
Q Consensus 78 Gk~VIID~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~ 127 (611)
+..+|+|+......+...+..+...+ .+++|++|.+++.+|+..|..
T Consensus 104 ~~~~il~g~~~~~~~~~~l~~~~~~~---~vi~L~~~~~~~l~r~~~r~~ 150 (246)
T 2bbw_A 104 GQHWLLDGFPRTLGQAEALDKICEVD---LVISLNIPFETLKDRLSRRWI 150 (246)
T ss_dssp TSCEEEESCCCSHHHHHHHHTTCCCC---EEEEEECCHHHHHHHHHTEEE
T ss_pred CCeEEEECCCCCHHHHHHHHhhcCCC---EEEEEECCHHHHHHHHHcCCC
Confidence 56788998655543333332222222 478999999999999988753
No 124
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=98.47 E-value=1.8e-07 Score=87.29 Aligned_cols=95 Identities=20% Similarity=0.206 Sum_probs=56.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhcc---CCC--------CcH--HHHHHHHHHHHHCCCcE-EEecC
Q 007244 21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK---GKS--------GTK--VQCLTSASSALKKGKSV-FLDRC 86 (611)
Q Consensus 21 ~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~---~~~--------~~~--~~~~~~~~~~L~~Gk~V-IID~t 86 (611)
.+|+|+|+|||||||+++.|++.++.++ ++.|.+.. +.. +.. ......+...+.....+ |+...
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~--id~D~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~Vi~~g 85 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEV--LDTDMIISERVGLSVREIFEELGEDNFRMFEKNLIDELKTLKTPHVISTG 85 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCE--EEHHHHHHHHHTSCHHHHHHHTCHHHHHHHHHHHHHHHHTCSSCCEEECC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCE--EEChHHHHHHhCCCHHHHHHHhCHHHHHHHHHHHHHHHHhcCCCEEEECC
Confidence 4789999999999999999999999554 77776632 110 110 01112222223333344 55431
Q ss_pred -CCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhc
Q 007244 87 -NLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKR 125 (611)
Q Consensus 87 -nl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R 125 (611)
.+... +. ++.. -.+|+|++|.+++.+|+.+|
T Consensus 86 ~g~~~~-~~----l~~~---~~vi~l~~~~e~~~~Rl~~r 117 (168)
T 1zuh_A 86 GGIVMH-EN----LKGL---GTTFYLKMDFETLIKRLNQK 117 (168)
T ss_dssp GGGGGC-GG----GTTS---EEEEEEECCHHHHHHHHCC-
T ss_pred CCEech-hH----HhcC---CEEEEEECCHHHHHHHHhcc
Confidence 11100 11 3222 25889999999999999888
No 125
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=98.47 E-value=4e-07 Score=88.65 Aligned_cols=35 Identities=31% Similarity=0.358 Sum_probs=29.4
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i 56 (611)
++.+|+|+|++||||||+++.|++ ++ +.+++.|.+
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~-lg--~~~id~D~~ 37 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD-LG--INVIDADII 37 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH-TT--CEEEEHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH-cC--CEEEEccHH
Confidence 467999999999999999999987 77 556777655
No 126
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=98.47 E-value=8.5e-07 Score=87.49 Aligned_cols=110 Identities=17% Similarity=0.145 Sum_probs=73.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhcc-----C--------------C-----CCcHH-----------
Q 007244 21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK-----G--------------K-----SGTKV----------- 65 (611)
Q Consensus 21 ~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~-----~--------------~-----~~~~~----------- 65 (611)
.-|.|+|.+||||||+++.+.+ +| +.+|+.|.+.. + . ...+.
T Consensus 10 ~~iglTGgigsGKStv~~~l~~-~g--~~vidaD~ia~~l~~~~~~~~~~i~~~fG~~~~~~dg~ldR~~L~~~vF~d~~ 86 (210)
T 4i1u_A 10 YAIGLTGGIGSGKTTVADLFAA-RG--ASLVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAADGSLDRARMRALIFSDED 86 (210)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH-TT--CEEEEHHHHHHHHTSTTCTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHHHCHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CC--CcEEECcHHHHHHhcCCcHHHHHHHHHhChhhcCCCCCCcHHHHHHHHhCCHH
Confidence 3589999999999999998876 77 66688877521 0 0 00110
Q ss_pred -----------HHHHHHHHHHHC--CCcEEEecCCCCH-HHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCC
Q 007244 66 -----------QCLTSASSALKK--GKSVFLDRCNLER-EQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGN 131 (611)
Q Consensus 66 -----------~~~~~~~~~L~~--Gk~VIID~tnl~~-~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~ 131 (611)
.+...+.+.+.. +..+|+|..-+.+ .....+.+. +|++++|.++..+|+.+|..
T Consensus 87 ~~~~L~~i~HP~I~~~~~~~~~~~~~~~vv~d~pLL~E~~~~~~~~D~--------vi~V~ap~e~r~~Rl~~Rdg---- 154 (210)
T 4i1u_A 87 ARRRLEAITHPLIRAETEREARDAQGPYVIFVVPLLVESRNWKARCDR--------VLVVDCPVDTQIARVMQRNG---- 154 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCSSSEEEECTTCTTCHHHHHHCSE--------EEEEECCHHHHHHHHHHHHC----
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcCCCEEEEEEecccccCCccccCCe--------EEEEECCHHHHHHHHHhcCC----
Confidence 011233333332 3458999966665 444444333 88999999999999999974
Q ss_pred CCCCCHHHHHHHHHhhc
Q 007244 132 LQGGKAAAVVNRMLQKK 148 (611)
Q Consensus 132 ~~~~vpeevi~rm~~~~ 148 (611)
...+++..++..+.
T Consensus 155 ---~s~eea~~ri~~Q~ 168 (210)
T 4i1u_A 155 ---FTREQVEAIIARQA 168 (210)
T ss_dssp ---CCHHHHHHHHHHSC
T ss_pred ---CCHHHHHHHHHHcC
Confidence 45677777777764
No 127
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=98.46 E-value=3e-07 Score=91.73 Aligned_cols=152 Identities=14% Similarity=0.142 Sum_probs=80.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHc-------CCCeEEeec-----------chhccCCCCcHHH-----------HHH
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSS-------ARPWARICQ-----------DTINKGKSGTKVQ-----------CLT 69 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~-------~~~~~~Is~-----------D~i~~~~~~~~~~-----------~~~ 69 (611)
++.+|+|.|++||||||+++.|.+.+ +..+..... +.+.++....... +..
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~rep~~t~~g~~ir~~l~~~~~~~~~~~llf~a~R~~~~~~ 103 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTREPGGTRLGETLREILLNQPMDLETEALLMFAGRREHLAL 103 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEESSSSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeecCCCCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999999998876 322222210 1111222221111 113
Q ss_pred HHHHHHHCCCcEEEecCCCC------------HHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCC
Q 007244 70 SASSALKKGKSVFLDRCNLE------------REQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGK 136 (611)
Q Consensus 70 ~~~~~L~~Gk~VIID~tnl~------------~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~v 136 (611)
.+..+|..|+.||.|..... .+....+... .....+-.+|+|++|.+++.+|+.+|.... +. +.
T Consensus 104 ~i~p~l~~g~~VI~DRy~~S~~ayq~~~~gl~~~~~~~l~~~~~~~~~PDl~I~Ldv~~e~~~~Ri~~R~~~d--r~-E~ 180 (227)
T 3v9p_A 104 VIEPALARGDWVVSDRFTDATFAYQGGGRGLPRDKLEALERWVQGGFQPDLTVLFDVPPQIASARRGAVRMPD--KF-ES 180 (227)
T ss_dssp THHHHHHTTCEEEEECCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCSSCGGGTTTCCCCC------CC
T ss_pred HHHHHHHcCCEEEEeccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhccCcc--ch-hh
Confidence 46678899999999973222 2222222122 112233468899999999999999885311 11 22
Q ss_pred -HHHHHHHHHhhccCCCccCCccEEEEcCChhhHHHHHH
Q 007244 137 -AAAVVNRMLQKKELPKLSEGFSRITLCQNENDVQAALD 174 (611)
Q Consensus 137 -peevi~rm~~~~e~P~~~EgFd~V~vv~~~~evd~av~ 174 (611)
..+.+++....++.....+. .++++++....++++..
T Consensus 181 ~~~ef~~rv~~~Y~~la~~~~-~~~~vIDa~~s~eeV~~ 218 (227)
T 3v9p_A 181 ESDAFFARTRAEYLRRAQEAP-HRFVIVDSSEPIAQIRK 218 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHCT-TTEEEEETTSCHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhc-CCEEEEeCCCCHHHHHH
Confidence 34555555554432221111 13455554555555544
No 128
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=98.46 E-value=1.3e-06 Score=83.47 Aligned_cols=34 Identities=24% Similarity=0.384 Sum_probs=29.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhc
Q 007244 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN 57 (611)
Q Consensus 22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~ 57 (611)
+|.|+|++||||||+++.|++.++.+ +++.|.+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~--~~d~d~~~ 37 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVP--YLSSGLLY 37 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCC--EEEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCc--eeccchHH
Confidence 89999999999999999999998844 47777663
No 129
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=98.45 E-value=1.2e-06 Score=85.71 Aligned_cols=109 Identities=20% Similarity=0.230 Sum_probs=63.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcCC--CeEEeec-------chh----ccCC-CCcHH-----------HHHHHHHH
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSSAR--PWARICQ-------DTI----NKGK-SGTKV-----------QCLTSASS 73 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~--~~~~Is~-------D~i----~~~~-~~~~~-----------~~~~~~~~ 73 (611)
|...|++-|+.||||||+++.|.+.+.. ....... +.+ .++. ..... .+...+..
T Consensus 1 M~kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~~eP~~t~~g~~ir~~l~~~~~~~~~~~~lLf~a~R~~~~~~~i~p 80 (205)
T 4hlc_A 1 MSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTREPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREHLVLKVIP 80 (205)
T ss_dssp -CEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEEESSTTCHHHHHHHHHHHSSCCCCHHHHHHHHHHHHHHHHHHTHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeeCCCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999999987742 2222210 111 1221 11111 12245667
Q ss_pred HHHCCCcEEEecCCC------------CHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244 74 ALKKGKSVFLDRCNL------------EREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (611)
Q Consensus 74 ~L~~Gk~VIID~tnl------------~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~ 127 (611)
+|..|+.||.|.... .......+... .....+=.+|+|++|.+++.+|+.+|+.
T Consensus 81 ~l~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PDl~i~Ld~~~e~~~~Ri~~r~~ 147 (205)
T 4hlc_A 81 ALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSR 147 (205)
T ss_dssp HHHTTCEEEEECCHHHHHHHTTTTTSSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHC---
T ss_pred HHHcCCEEEecCcccchHHHHhccccchHHHHHHHHHHHhcCCCCCEEeeeCCCHHHHHHHHHhcCC
Confidence 889999999998322 11222222222 1111222588999999999999988865
No 130
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=98.42 E-value=1.9e-06 Score=85.02 Aligned_cols=152 Identities=18% Similarity=0.132 Sum_probs=82.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEeec------------chhc--c----CCCCcHH-----------HH
Q 007244 20 QILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQ------------DTIN--K----GKSGTKV-----------QC 67 (611)
Q Consensus 20 p~LIvLvG~PGSGKST~A~~L~~~~~---~~~~~Is~------------D~i~--~----~~~~~~~-----------~~ 67 (611)
+.+|++.|++||||||+++.|.+.+. ..-+.+.. +.+. . ....... .+
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~rep~~t~~g~~ir~~l~~~~~~~~~~~~~~~e~lL~~A~R~~~~ 82 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFYAARVQLV 82 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSHHHHHHHHHHHSTTTTTTCCCCHHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceeeeCCCCCHHHHHHHHHHhcccccccccCChHHHHHHHHHHHHHHH
Confidence 57899999999999999999987653 21122221 1112 1 1122111 11
Q ss_pred HHHHHHHHHCCCcEEEecCCCC------------HHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCC
Q 007244 68 LTSASSALKKGKSVFLDRCNLE------------REQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQG 134 (611)
Q Consensus 68 ~~~~~~~L~~Gk~VIID~tnl~------------~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~ 134 (611)
...+..+|..|..||.|....+ ......+-.. .....+-.+|+|++|.+++.+|+.+|..... ..
T Consensus 83 ~~~i~paL~~g~~VI~DRy~~S~~AYq~~~~g~~~~~~~~l~~~~~~~~~PDl~i~Ldv~~e~~~~Ri~~R~~~dr--~E 160 (213)
T 4tmk_A 83 ETVIKPALANGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRARARGELDR--IE 160 (213)
T ss_dssp HHTHHHHHHTTCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHHSSCCT--TT
T ss_pred HHHHHHHHHCCCEEEEcCcHhHHHHHcccccCCCHHHHHHHHHHhccCCCCCEEEEEeCCHHHHHHHHHhcCCccc--hh
Confidence 2456778999999999983222 1222112122 1112233688999999999999999864211 11
Q ss_pred CCHHHHHHHHHhhccCCCccCCccEEEEcCChhhHHHHHHH
Q 007244 135 GKAAAVVNRMLQKKELPKLSEGFSRITLCQNENDVQAALDT 175 (611)
Q Consensus 135 ~vpeevi~rm~~~~e~P~~~EgFd~V~vv~~~~evd~av~~ 175 (611)
....+.+++....+...... +.++++++....++++...
T Consensus 161 ~~~~~f~~rv~~~y~~la~~--~~~~~vIDa~~s~eeV~~~ 199 (213)
T 4tmk_A 161 QESFDFFNRTRARYLELAAQ--DKSIHTIDATQPLEAVMDA 199 (213)
T ss_dssp TSCHHHHHHHHHHHHHHHHT--CTTEEEEETTSCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHH--CCcEEEECCCCCHHHHHHH
Confidence 11234444544443221111 1345555555555555443
No 131
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=98.38 E-value=1.2e-06 Score=87.80 Aligned_cols=153 Identities=16% Similarity=0.177 Sum_probs=78.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEeec--------c----hhcc----CCCCcHHH-----------HH
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQ--------D----TINK----GKSGTKVQ-----------CL 68 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~~---~~~~~Is~--------D----~i~~----~~~~~~~~-----------~~ 68 (611)
++.+|+|.|++||||||+++.|.+.+. ...+.+.. . .+.. .......+ +.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~rep~~t~~g~~ir~~l~~~~~~~~~~~~~e~lLf~A~R~~~~~ 105 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTREPGGTLLAEKLRALVKEEHPGEELQDITELLLVYAARVQLVE 105 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSHHHHHHHHHHHSCCTTSCCCHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecCCCCCHHHHHHHHHHhhCCCcccCCHHHHHHHHHHHHHHHHH
Confidence 368999999999999999999987764 22122221 1 1111 11221111 11
Q ss_pred HHHHHHHHCCCcEEEecCC------------CCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCC
Q 007244 69 TSASSALKKGKSVFLDRCN------------LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGG 135 (611)
Q Consensus 69 ~~~~~~L~~Gk~VIID~tn------------l~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~ 135 (611)
..+..+|..|+.||.|... +.......+... .....+-.+|+|++|.+++.+|+.+|..... . ..
T Consensus 106 ~~I~paL~~g~~VI~DRy~~S~~AYq~~~rgl~~~~i~~l~~~~~~~~~PDlvi~Ldv~~e~~~~Ri~~R~~~dr-~-E~ 183 (236)
T 3lv8_A 106 NVIKPALARGEWVVGDRHDMSSQAYQGGGRQIAPSTMQSLKQTALGDFKPDLTLYLDIDPKLGLERARGRGELDR-I-EK 183 (236)
T ss_dssp HTHHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHC-----CCCT-T-TT
T ss_pred HHHHHHHHcCCEEEEeeecchHHhhhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCcch-h-hh
Confidence 3466788999999999732 222222222222 1112233688999999999999998863111 1 11
Q ss_pred CHHHHHHHHHhhccCCCccCCccEEEEcCChhhHHHHHHH
Q 007244 136 KAAAVVNRMLQKKELPKLSEGFSRITLCQNENDVQAALDT 175 (611)
Q Consensus 136 vpeevi~rm~~~~e~P~~~EgFd~V~vv~~~~evd~av~~ 175 (611)
...+.+.+..+.+......+. . +++++....++++...
T Consensus 184 ~~~~~~~rv~~~y~~la~~~~-~-~~vIDa~~sieeV~~~ 221 (236)
T 3lv8_A 184 MDISFFERARERYLELANSDD-S-VVMIDAAQSIEQVTAD 221 (236)
T ss_dssp SCHHHHHHHHHHHHHHHHHCT-T-EEEEETTSCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHCC-C-EEEEeCCCCHHHHHHH
Confidence 124555555555432221111 1 4455544555555443
No 132
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.37 E-value=4.5e-06 Score=83.77 Aligned_cols=37 Identities=24% Similarity=0.501 Sum_probs=30.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhc
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN 57 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~ 57 (611)
+..+|.|+|++||||||+++.|++.++ +..++.+.+.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg--~~~~d~g~i~ 62 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLN--WRLLDSGAIY 62 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTT--CEEEEHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC--CCcCCCCcee
Confidence 456899999999999999999999988 4456665553
No 133
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.36 E-value=2e-06 Score=83.72 Aligned_cols=35 Identities=23% Similarity=0.558 Sum_probs=29.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh
Q 007244 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (611)
Q Consensus 20 p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i 56 (611)
+.+|.|+|+|||||||+++.|++.++ +.+++.|.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g--~~~~d~g~i 39 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQ--WHLLDSGAI 39 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHT--CEEEEHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC--CCcccCcce
Confidence 45899999999999999999999888 556776665
No 134
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.36 E-value=8.1e-07 Score=89.75 Aligned_cols=97 Identities=18% Similarity=0.118 Sum_probs=61.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCC-C-cH--------H----HHH-HHHHHHHHC-CCcEEE
Q 007244 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKS-G-TK--------V----QCL-TSASSALKK-GKSVFL 83 (611)
Q Consensus 20 p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~-~-~~--------~----~~~-~~~~~~L~~-Gk~VII 83 (611)
...|+|+|+|||||||+++.|++.++ +.+++.|.+..... + .. . ... ..+.+.+.. ...||.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg--~~~~d~d~~~~~~~~g~~i~~i~~~~ge~~fr~~e~~~l~~l~~~~~~~Via 125 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG--YTFFDCDTLIEQAMKGTSVAEIFEHFGESVFREKETEALKKLSLMYHQVVVS 125 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT--CEEEEHHHHHHHHSTTSCHHHHHHHHCHHHHHHHHHHHHHHHHHHCSSEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC--CcEEeCcHHHHHHhcCccHHHHHHHhCcHHHHHHHHHHHHHHHhhcCCcEEe
Confidence 56899999999999999999999998 55688777642211 1 00 0 111 223333333 344554
Q ss_pred ec--CCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhc
Q 007244 84 DR--CNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKR 125 (611)
Q Consensus 84 D~--tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R 125 (611)
++ +.+....+..+ +. + .+|||++|.+++.+|+.+|
T Consensus 126 ~GgG~v~~~~~~~~l---~~-~---~vV~L~a~~e~l~~Rl~~~ 162 (250)
T 3nwj_A 126 TGGGAVIRPINWKYM---HK-G---ISIWLDVPLEALAHRIAAV 162 (250)
T ss_dssp CCGGGGGSHHHHHHH---TT-S---EEEEEECCHHHHHHHHHC-
T ss_pred cCCCeecCHHHHHHH---hC-C---cEEEEECCHHHHHHHHhhc
Confidence 43 34444454443 32 3 4899999999999999864
No 135
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.35 E-value=1e-06 Score=98.56 Aligned_cols=105 Identities=17% Similarity=0.204 Sum_probs=59.7
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHcC----CCeEEeecchhccC---C--CCcHH-----HHHHHHHHHH-HCCCcEE
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSSA----RPWARICQDTINKG---K--SGTKV-----QCLTSASSAL-KKGKSVF 82 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~----~~~~~Is~D~i~~~---~--~~~~~-----~~~~~~~~~L-~~Gk~VI 82 (611)
.++.+|+|+|++||||||+++.|+..++ ..+..++.|.+... . +...+ ..+..+...+ ..+..+|
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~r~i~~v~q~l~~~~~ivi 446 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASEITKNRGIAI 446 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTSSCCCSHHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred ccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHhcCCEEE
Confidence 4568999999999999999999998765 23445788776431 1 11111 1112222223 3454555
Q ss_pred EecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHH
Q 007244 83 LDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSV 123 (611)
Q Consensus 83 ID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~ 123 (611)
..........+..+.++ +..+ .+.+|++++|.++|.+|..
T Consensus 447 ~~~~~~~~~~r~~~r~lL~~~g-~f~~V~L~~~~e~~~~R~~ 487 (552)
T 3cr8_A 447 CAPIAPYRQTRRDVRAMIEAVG-GFVEIHVATPIETCESRDR 487 (552)
T ss_dssp ECCCCCCHHHHHHHHHHHHTTS-EEEEEEECC----------
T ss_pred EecCCccHHHHHHHHHHHHHcC-CEEEEEEcCCHHHHHHhcc
Confidence 54433346667777777 6656 5779999999999999974
No 136
>4gua_A Non-structural polyprotein; viral precursor polyprotein, protease, zinc-binding, hydrola; HET: MES; 2.85A {Sindbis virus}
Probab=98.34 E-value=5.9e-08 Score=105.92 Aligned_cols=82 Identities=11% Similarity=0.059 Sum_probs=65.1
Q ss_pred ccccceeecccccccccc-cCCCCcchhhhcccCCCCCCCccccccCccCCCCCChHHHHHHHHHHHHHHHHhcCC-eEE
Q 007244 239 LEGQEITSLLSDAAGEEV-KGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGN-ARL 316 (611)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~~~~~~SiAfPaIStGi~gfP~~~aa~Iiv~tv~~f~~~~~~-i~i 316 (611)
..+-|.+-|.|..+.+.. .+.+...=.+++.+|.+++++|||||.||||+||||.+ ++.|+++++.+|+.+++- +.+
T Consensus 405 KyIIHtVGPvw~~g~~~E~~~lLascYrnsLkLA~e~~~kSIAFPLISTGIYG~PKd-al~IAl~~I~~fL~~~D~dV~I 483 (670)
T 4gua_A 405 KKVIHAVGPDFRKHPEAEALKLLQNAYHAVADLVNEHNIKSVAIPLLSTGIYAAGKD-RLEVSLNCLTTALDRTDADVTI 483 (670)
T ss_dssp EEEEEECCCCTTSSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEECCTTSSSTTTTSC-CHHHHHHHHHHHHTTSSCEEEE
T ss_pred ceEEEcCCCCccCCCCchHHHHHHHHHHHHHHHHHHcCCcEEEEccccccCCCCCHH-HHHHHHHHHHHHHhccCCEEEE
Confidence 778898889998655433 23455566778899999999999999999999999987 689999999999997652 455
Q ss_pred EEeec
Q 007244 317 VLVDL 321 (611)
Q Consensus 317 V~vd~ 321 (611)
|+.|.
T Consensus 484 vcfDK 488 (670)
T 4gua_A 484 YCLDK 488 (670)
T ss_dssp ECSCH
T ss_pred EEecC
Confidence 54433
No 137
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.30 E-value=6.4e-07 Score=86.59 Aligned_cols=102 Identities=15% Similarity=0.174 Sum_probs=52.5
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchhccCC-----CC--cH----------HHHHHHHHHHH-
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGK-----SG--TK----------VQCLTSASSAL- 75 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D~i~~~~-----~~--~~----------~~~~~~~~~~L- 75 (611)
...+.+|.|+|++||||||+++.+...+ +.....++.|.+.... .+ .. ..+.+.+...+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~v~~~l~ 98 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEWFEYYYLQWDVEWLTHQLFRQLK 98 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCCHHHHSSSSSCHHHHHHHTSSCHHHHHHHTGGGTT
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCCHHHHHhcCCCCccCCCccccCHHHHHHHHHHHHh
Confidence 4567899999999999999999998754 4445566677664210 11 11 11111111111
Q ss_pred ------------------------HCCCcEEEecCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcc
Q 007244 76 ------------------------KKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRI 126 (611)
Q Consensus 76 ------------------------~~Gk~VIID~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~ 126 (611)
..+..||+|+..+...... ...+ .+|++++|.+++++|+.+|.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vIveg~~l~~~~~~-----~~~d---~~i~v~~~~~~~~~R~~~R~ 165 (201)
T 1rz3_A 99 ASHQLTLPFYDHETDTHSKRTVYLSDSDMIMIEGVFLQRKEWR-----PFFD---FVVYLDCPREIRFARENDQV 165 (201)
T ss_dssp TCSEEEEEEEETTTTEEEEEEEECTTCSEEEEEETTTTSTTTG-----GGCS---EEEEECCC------------
T ss_pred cCCccccCceeccCCCCCCceEEeCCCcEEEEechhhccHHHH-----hhcC---EEEEEeCCHHHHHHHHhcCC
Confidence 1245689999654422211 1122 48899999999999999986
No 138
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=98.30 E-value=1.4e-06 Score=84.79 Aligned_cols=98 Identities=11% Similarity=0.072 Sum_probs=63.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhcc-----C----CC---CcH----H------------------
Q 007244 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK-----G----KS---GTK----V------------------ 65 (611)
Q Consensus 20 p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~-----~----~~---~~~----~------------------ 65 (611)
..+|.|.|++||||||+++.|++.++.+| ++.+.++. + .+ .+. .
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~lg~~~--~D~~~~~~~a~~~g~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 83 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHYNIPL--YSKELLDEVAKDGRYSKEVLERFDEKPMNFAFIPVPAGGTTISLEQDIA 83 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHTTCCE--ECHHHHHHTTCC---------------------------------CHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhCcCE--ECHHHHHHHHHhcCCCHHHHHHHhhhchhHHHHHhccccccccccHHHH
Confidence 35899999999999999999999999665 67554421 0 00 000 0
Q ss_pred HHHHHHHHHHH--CCCcEEEecCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244 66 QCLTSASSALK--KGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (611)
Q Consensus 66 ~~~~~~~~~L~--~Gk~VIID~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~ 127 (611)
.....+.+.|. ...++||++.. -.++ ++.. .....|||.+|.+++.+|+.+|..
T Consensus 84 ~~~~~~i~~la~~~~~~~Vi~Gr~------g~~v-l~~~-~~~~~V~L~A~~e~r~~R~~~~~~ 139 (201)
T 3fdi_A 84 IRQFNFIRKKANEEKESFVIVGRC------AEEI-LSDN-PNMISAFILGDKDTKTKRVMEREG 139 (201)
T ss_dssp HHHHHHHHHHHHTSCCCEEEESTT------HHHH-TTTC-TTEEEEEEEECHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhcCCCEEEEECC------cchh-cCCC-CCeEEEEEECCHHHHHHHHHHHhC
Confidence 12234444566 66788998831 1121 2222 124688999999999999987743
No 139
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=98.30 E-value=7.4e-06 Score=79.41 Aligned_cols=35 Identities=20% Similarity=0.295 Sum_probs=29.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh
Q 007244 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (611)
Q Consensus 20 p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i 56 (611)
|.+|+|+|++||||||+++.|++.++ +.+++.|.+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g--~~~~~~d~~ 37 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELS--MIYVDTGAM 37 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT--CEEEEHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC--CceecCChH
Confidence 56899999999999999999999988 555776655
No 140
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=98.30 E-value=4.7e-06 Score=87.72 Aligned_cols=106 Identities=19% Similarity=0.196 Sum_probs=69.3
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhc-----------------cC-------------CCCcHHHH
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN-----------------KG-------------KSGTKVQC 67 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~-----------------~~-------------~~~~~~~~ 67 (611)
.++.+|+|+||+||||||++..|++.++ ..+|+.|.+. .+ .......+
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l~--~eiIs~Ds~qvYr~mdIgTakp~~eE~~gvphhlidi~~~~~e~~s~~~F 115 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAHFP--LEVINSDKMQVYKGLDITTNKISVPDRGGVPHHLLGEVDPARGELTPADF 115 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTTSC--EEEEECCSSTTBSSCTTTTTCCCSGGGTTCCEESSSCBCGGGCCCCHHHH
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHCC--CcEEcccccccccceeeecCCCCHHHHcCCCEeeccccCcccCccCHHHH
Confidence 3457999999999999999999999988 5567766651 00 01111222
Q ss_pred ----HHHHHHHHHCCCcEEEecCCCCHHHHHHHHH------------------h-CCCCCeEEEEEEeCCHHHHHHHHHh
Q 007244 68 ----LTSASSALKKGKSVFLDRCNLEREQRTDFVK------------------L-GGPEVDVHAVVLDLPAKLCISRSVK 124 (611)
Q Consensus 68 ----~~~~~~~L~~Gk~VIID~tnl~~~~R~~~~~------------------l-~~~~~~v~vV~Ld~p~e~~~~Rl~~ 124 (611)
...+.+...+|+.+|+-+... -..+.++. + ....+...+|+|+++.+++.+|+.+
T Consensus 116 ~~~a~~~i~~i~~~g~~pIlvGGtg--lYi~all~g~~~p~~~d~~~a~~~~~~~~~~~~~~~~i~L~~~re~L~~RI~~ 193 (339)
T 3a8t_A 116 RSLAGKAVSEITGRRKLPVLVGGSN--SFIHALLVDRFDSSGPGVFEEGSHSVVSSELRYDCCFLWVDVSVKVLTDYLAK 193 (339)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECCCH--HHHHHHHBSSCCTTCC-------------CBSSEEEEEEEECCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCeEEEEcCHH--HHHHHHHhCCCCCcccChhhhcccCccccccccCeEEEEEeCCHHHHHHHHHh
Confidence 244555667888888876321 11111111 1 1234567899999999999999998
Q ss_pred ccc
Q 007244 125 RIE 127 (611)
Q Consensus 125 R~~ 127 (611)
|..
T Consensus 194 R~~ 196 (339)
T 3a8t_A 194 RVD 196 (339)
T ss_dssp HHH
T ss_pred hcc
Confidence 854
No 141
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=98.25 E-value=6.6e-07 Score=86.79 Aligned_cols=37 Identities=27% Similarity=0.416 Sum_probs=31.9
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i 56 (611)
....+|.|+|++||||||+++.|++.++ +.+|+.|.+
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~lg--~~vid~D~~ 46 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNKYG--AHVVNVDRI 46 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHC--CEEEEHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcC--CEEEECcHH
Confidence 3457899999999999999999999878 566888777
No 142
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=98.25 E-value=7.5e-06 Score=79.47 Aligned_cols=145 Identities=15% Similarity=0.167 Sum_probs=76.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeec-------chh----ccCCCCc----------HHHHHHHHHHHHHC
Q 007244 22 LVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQ-------DTI----NKGKSGT----------KVQCLTSASSALKK 77 (611)
Q Consensus 22 LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~-------D~i----~~~~~~~----------~~~~~~~~~~~L~~ 77 (611)
+|++-|+.||||||.++.|.+.+ +..+..... ..+ ....... +.+....+..+|..
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~treP~~t~~~~~ir~~l~~~~~~~~~~~ll~~a~r~~~~~~I~~~L~~ 81 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREPGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTEIKQYLSE 81 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCCcHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 68899999999999999988765 333322211 111 1121111 11233667788999
Q ss_pred CCcEEEecCCCCH------------HHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHH
Q 007244 78 GKSVFLDRCNLER------------EQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRM 144 (611)
Q Consensus 78 Gk~VIID~tnl~~------------~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm 144 (611)
|..||.|...... .....+... .....+-.+|+|++|.+++.+|...|.+.+ ..+-+.+.
T Consensus 82 g~~Vi~DRy~~S~~ayq~~~~~~~~~~i~~l~~~~~~~~~PDl~i~Ld~~~e~~~~R~~~~dr~e-------~~ef~~rv 154 (197)
T 3hjn_A 82 GYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETALKRKGELNRFE-------KREFLERV 154 (197)
T ss_dssp TCEEEEESCHHHHHHHHTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHC---CTTC-------CHHHHHHH
T ss_pred CCeEEecccchHHHHHHHhccCCCHHHHHHHHhhhhcCCCCCceeecCcChHHHHHhCcCcCccc-------cHHHHHHH
Confidence 9999999843222 111222222 111123358899999999999976665421 12344444
Q ss_pred HhhccCCCccCCccEEEEcCChhhHHHHHH
Q 007244 145 LQKKELPKLSEGFSRITLCQNENDVQAALD 174 (611)
Q Consensus 145 ~~~~e~P~~~EgFd~V~vv~~~~evd~av~ 174 (611)
.+.+......++ +++++++....++++..
T Consensus 155 ~~~y~~la~~~~-~~~~~IDa~~~~eeV~~ 183 (197)
T 3hjn_A 155 REGYLVLAREHP-ERIVVLDGKRSIEEIHR 183 (197)
T ss_dssp HHHHHHHHHHCT-TTEEEEETTSCHHHHHH
T ss_pred HHHHHHHHHhCC-CCEEEEcCCCCHHHHHH
Confidence 443322111111 23555555455555544
No 143
>3ejg_A Non-structural protein 3; HCOV 229E, X-domain, macro domain, NSP3, ADRP, hydrolase, ribosomal frameshifting, RNA-binding; 1.78A {Human coronavirus 229E} PDB: 3ewr_A* 3ewq_A*
Probab=98.24 E-value=2.4e-07 Score=90.13 Aligned_cols=104 Identities=13% Similarity=0.084 Sum_probs=66.2
Q ss_pred CCchhhhhhHHHHHHhhc---CCCCCCCCCCCCCCCCCCcccccccccccccceeecccccccccccCCCCcchhhhccc
Q 007244 194 NPDAKIQLGIMKFLKKVD---APSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGEEVKGTENPEVASVNQN 270 (611)
Q Consensus 194 ~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 270 (611)
......++.|++..+++- .+..+ |+. . .|.+.++ ++-|.+-|.|.. .. ...+...-.+|+..
T Consensus 76 AI~~aaG~~l~~ec~~l~~~~g~~~~--G~a-----~--iT~~~~L---~VIHtVGP~~~~--~~-~~~L~~~y~~~L~~ 140 (193)
T 3ejg_A 76 ALDVYTKGKLQRLSKEHIGLAGKVKV--GTG-----V--MVECDSL---RIFNVVGPRKGK--HE-RDLLIKAYNTINNE 140 (193)
T ss_dssp HHHHHTTTHHHHHHHHHHHHHCSCCT--TCE-----E--EEEETTE---EEEEEECCCSST--TH-HHHHHHHHHHHHHS
T ss_pred HHHHHhhHHHHHHHHHHHHHcCCCCC--CCE-----E--EecCCCe---eEEEecCCCCCc--hH-HHHHHHHHHHHHHh
Confidence 344555777777776551 12222 222 1 2445555 788988888853 22 22222233334442
Q ss_pred CCCCCCCccccccCccCCCCCChHHHHHHHHHHHHHHHHhcCCeEEEEeecC
Q 007244 271 GSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGNARLVLVDLT 322 (611)
Q Consensus 271 ~~~~~~~SiAfPaIStGi~gfP~~~aa~Iiv~tv~~f~~~~~~i~iV~vd~s 322 (611)
.+|||||+||||+||||.++||++++++++++ .+.||+++..
T Consensus 141 -----~~SIAfPaIstGi~G~P~~~aa~ial~~v~~~-----~V~fv~f~~~ 182 (193)
T 3ejg_A 141 -----QGTPLTPILSCGIFGIKLETSLEVLLDVCNTK-----EVKVFVYTDT 182 (193)
T ss_dssp -----SSCEEECCTTCGGGCCCHHHHHHHHHHHCCSS-----CEEEEECSHH
T ss_pred -----cCceeecccccCCCCCCHHHHHHHHHHHHhcC-----eEEEEEcCHH
Confidence 27999999999999999999999999999772 5666665433
No 144
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=98.22 E-value=2.1e-05 Score=77.71 Aligned_cols=38 Identities=24% Similarity=0.371 Sum_probs=31.1
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i 56 (611)
...+.+|.|+|++||||||+++.|++.++ +..++.|.+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~lg--~~~~d~d~~ 50 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDFG--FTYLDTGAM 50 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHHC--CEEEEHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHcC--CceecCCCe
Confidence 45567899999999999999999999888 455776655
No 145
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=98.20 E-value=6e-08 Score=93.57 Aligned_cols=155 Identities=18% Similarity=0.172 Sum_probs=80.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCC-e--EEee---------cchhcc---CCC-----CcH-HHHH---------HHH
Q 007244 22 LVIMVGAPGSGKSTFCEHVMRSSARP-W--ARIC---------QDTINK---GKS-----GTK-VQCL---------TSA 71 (611)
Q Consensus 22 LIvLvG~PGSGKST~A~~L~~~~~~~-~--~~Is---------~D~i~~---~~~-----~~~-~~~~---------~~~ 71 (611)
+|+|+|++||||||+++.|.+.++.. + ..+. .+.++. +.+ ... ...+ ..+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~i 81 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAFPRYGQSVAADIAAEALHGEHGDLASSVYAMATLFALDRAGAVHTI 81 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEEEESSEEEEEEEEEEHHHHEEEEEEEEEEEHHHHHHHHHHHHHEEHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCCCcchhhHHHHHHcccccccCCCHhHHHHHHHHHHhhhHHHH
Confidence 79999999999999999999877521 1 1111 222221 110 011 1111 123
Q ss_pred HHHHHCCCcEEEecCCCCHHHHH-------------HH-HHhC----CCCCeEEEEEEeCCHHHHHHHHHhcccccCCCC
Q 007244 72 SSALKKGKSVFLDRCNLEREQRT-------------DF-VKLG----GPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQ 133 (611)
Q Consensus 72 ~~~L~~Gk~VIID~tnl~~~~R~-------------~~-~~l~----~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~ 133 (611)
...+..|..||+|+........+ .+ ..+. .....-.+|+|++|.+++.+|+.+|..+.+.+.
T Consensus 82 ~~~l~~g~~vi~D~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~ 161 (214)
T 1gtv_A 82 QGLCRGYDVVILDRYVASNAAYSAARLHENAAGKAAAWVQRIEFARLGLPKPDWQVLLAVSAELAGERSRGRAQRDPGRA 161 (214)
T ss_dssp HHEEEEEEEEEEEEEEHHHHHHHHHHEEEEEEEHHHHHHHHHHEEEEECCBCEEEEEEEEEHHHHHHHHHHHHHEBBEEE
T ss_pred HHHhhCCCEEEECCCcccchhhhhcccCccccHHHHHHHHhcccccccCCCCCEEEEEeCCHHHHHHHHHcccccccccc
Confidence 44455678899999654321111 11 1211 112344688999999999999999865211000
Q ss_pred C---CCHHHHHHHHHhhccCCCccCCccEEEEcCChhhHHHHHHHh
Q 007244 134 G---GKAAAVVNRMLQKKELPKLSEGFSRITLCQNENDVQAALDTY 176 (611)
Q Consensus 134 ~---~vpeevi~rm~~~~e~P~~~EgFd~V~vv~~~~evd~av~~~ 176 (611)
. +...+...++...+........-..+++++....++++...+
T Consensus 162 ~d~~e~~~~~~~~~~~~~~~~~~~~~~~~~~vId~~~~~~~v~~~i 207 (214)
T 1gtv_A 162 RDNYERDAELQQRTGAVYAELAAQGWGGRWLVVGADVDPGRLAATL 207 (214)
T ss_dssp EEEEEEEHHHHHHHHHHHHHHHHEEEEEEEEEEEEEEBHHHHHHHH
T ss_pred cccccccHHHHHHHHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHh
Confidence 0 112455555554443222111002345555555666665544
No 146
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=98.17 E-value=2.5e-06 Score=84.78 Aligned_cols=110 Identities=15% Similarity=0.112 Sum_probs=56.1
Q ss_pred cCCCcEEEEEEcCCCCcHHHHHHHHHHHcCC----CeEEeec--------c----hhcc-CCCCcHHHH-----------
Q 007244 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSAR----PWARICQ--------D----TINK-GKSGTKVQC----------- 67 (611)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~----~~~~Is~--------D----~i~~-~~~~~~~~~----------- 67 (611)
...++.+|++.|++||||||+++.|.+.+.. ....+.. + .+.+ .......+.
T Consensus 17 ~~~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~~t~~g~~ir~~l~~~~~~~~~~e~llf~a~R~~~~ 96 (223)
T 3ld9_A 17 QGPGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPGGTLLNESVRNLLFKAQGLDSLSELLFFIAMRREHF 96 (223)
T ss_dssp --CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSCSSHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999999886542 2322121 1 1121 112222111
Q ss_pred HHHHHHHHHCCCcEEEecCCCCH------------HHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244 68 LTSASSALKKGKSVFLDRCNLER------------EQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (611)
Q Consensus 68 ~~~~~~~L~~Gk~VIID~tnl~~------------~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~ 127 (611)
.+.+..+|..|..||.|...... +....+... .. ..+=.+|+|++|.+++.+|+ +|.+
T Consensus 97 ~~~I~paL~~g~~VI~DRy~~S~~Ayq~~~~g~~~~~~~~l~~~~~~-~~PDl~I~Ldv~~e~~~~Ri-~rdr 167 (223)
T 3ld9_A 97 VKIIKPSLMQKKIVICDRFIDSTIAYQGYGQGIDCSLIDQLNDLVID-VYPDITFIIDVDINESLSRS-CKNG 167 (223)
T ss_dssp HHTHHHHHHTTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHCS-SCCSEEEEEECC-------------
T ss_pred HHHHHHHHhcCCeEEEccchhhHHHhccccCCccHHHHHHHHHHhhc-CCCCeEEEEeCCHHHHHHHh-ccCc
Confidence 12356688999999999933211 111222222 22 22336889999999999998 5544
No 147
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=98.14 E-value=1.3e-05 Score=80.14 Aligned_cols=37 Identities=19% Similarity=0.288 Sum_probs=30.5
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i 56 (611)
.+|.+|.|.|||||||||+++.|++.++ +.+++.|.+
T Consensus 7 ~~~~~i~i~G~~GsGKsTla~~la~~lg--~~~~d~g~~ 43 (233)
T 3r20_A 7 SGSLVVAVDGPAGTGKSSVSRGLARALG--ARYLDTGAM 43 (233)
T ss_dssp --CCEEEEECCTTSSHHHHHHHHHHHHT--CEEEEHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC--CCcccCCcH
Confidence 3567999999999999999999999988 555776655
No 148
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=98.11 E-value=1.5e-06 Score=87.29 Aligned_cols=43 Identities=19% Similarity=0.241 Sum_probs=25.0
Q ss_pred cccccccccccc-ccCCCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244 3 TDIDDTCKAKDE-EKKWKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (611)
Q Consensus 3 ~~~~~~c~~~~~-~~~~~p~LIvLvG~PGSGKST~A~~L~~~~~ 45 (611)
.+.-..|..... ....++.+|+|.|++||||||+++.|++.+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 6 TPPKRSCPSFSASSEGTRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp -----------------CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred cchhccCCCCcccccccCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 345566765544 3345678999999999999999999999874
No 149
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*
Probab=98.08 E-value=3.7e-06 Score=86.93 Aligned_cols=139 Identities=13% Similarity=0.150 Sum_probs=84.4
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeE-Eee---------------------cchh----ccCCCCcHHH----
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWA-RIC---------------------QDTI----NKGKSGTKVQ---- 66 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~-~Is---------------------~D~i----~~~~~~~~~~---- 66 (611)
...+..|||+|| ||+|+.++|++.++..|. .|+ .+.+ .++.+.++.+
T Consensus 97 ~~~~RpvVl~Gp---~K~tl~~~Ll~~~p~~f~~sVs~TTR~pR~gE~dG~dY~Fv~s~e~fe~~i~~~~flE~a~~~gn 173 (292)
T 3tvt_A 97 INYTRPVIILGP---LKDRINDDLISEYPDKFGSCVPHTTRPKREYEVDGRDYHFVSSREQMERDIQNHLFIEAGQYNDN 173 (292)
T ss_dssp CSSCCCEEEEST---THHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBEECSCHHHHHHHHHTTCEEEEEEETTE
T ss_pred CCCCCeEEEeCC---CHHHHHHHHHHhChhhccccccCCccCCcCCccCCccccccCCHHHHHHHHhcCceEEEEEEccc
Confidence 455677899998 499999999998764331 121 1111 1222222211
Q ss_pred ----HHHHHHHHHHCCCcEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHH
Q 007244 67 ----CLTSASSALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVV 141 (611)
Q Consensus 67 ----~~~~~~~~L~~Gk~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi 141 (611)
-...+++.+..|+.+|+|. +.+....+ .....++.+++.+++.+++.+|+..|+. +..+.+.
T Consensus 174 ~YGT~~~~V~~~~~~gk~viLdi------d~qg~~~lk~~~~~pi~IFI~PpS~e~L~~r~~~r~~-------e~~~~~~ 240 (292)
T 3tvt_A 174 LYGTSVASVREVAEKGKHCILDV------SGNAIKRLQVAQLYPVAVFIKPKSVDSVMEMNRRMTE-------EQAKKTY 240 (292)
T ss_dssp EEEEEHHHHHHHHHHTCEEEECC------CTHHHHHHHHTTCCCEEEEECCSCHHHHHHTCTTSCT-------THHHHHH
T ss_pred eeEEehHHHHHHHHcCCcEEEec------cchhhhhcccccccceEEEEECCCHHHHHHHHhCCCc-------hhHHHHH
Confidence 1267888999999999999 45666656 3334445555556678888888776654 3455666
Q ss_pred HHHHhhccCCCccCCccEEEEcCChhhHHHHHHHh
Q 007244 142 NRMLQKKELPKLSEGFSRITLCQNENDVQAALDTY 176 (611)
Q Consensus 142 ~rm~~~~e~P~~~EgFd~V~vv~~~~evd~av~~~ 176 (611)
.|+.+.-. ...+.||.|+++++ ++.+...+
T Consensus 241 ~r~~k~e~--e~~~~fD~vIvNdd---le~a~~~l 270 (292)
T 3tvt_A 241 ERAIKMEQ--EFGEYFTGVVQGDT---IEEIYSKV 270 (292)
T ss_dssp HHHHHHHH--HHTTTCSEEECCSS---HHHHHHHH
T ss_pred HHHHHHHH--hhhhhCCEEEECcC---HHHHHHHH
Confidence 66554321 22456999887754 44444433
No 150
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.08 E-value=9.8e-06 Score=78.51 Aligned_cols=121 Identities=23% Similarity=0.220 Sum_probs=69.4
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEeecchhcc--------CC-----CC---cHHHHHHHHHHHHHC
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINK--------GK-----SG---TKVQCLTSASSALKK 77 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~---~~~~~Is~D~i~~--------~~-----~~---~~~~~~~~~~~~L~~ 77 (611)
.+++.+|.|+|++||||||+++.|...+. .....|..|.+.- +. .. ....+.. ....|..
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~l~~ 97 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDNRLLEPRGLLPRKGAPETFDFEGFQR-LCHALKH 97 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCCHHHHGGGTCGGGTTSGGGBCHHHHHH-HHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCCHHHHHHhcccccCCCCchhhHHHHHH-HHHHHhc
Confidence 46788999999999999999999987664 2244566554320 00 00 1111222 2233332
Q ss_pred C--------------------------CcEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccC
Q 007244 78 G--------------------------KSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEG 130 (611)
Q Consensus 78 G--------------------------k~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g 130 (611)
| ..+|+|+..+-. +-..|..+ ...+ .+|++++|.+++++|+.+|....+
T Consensus 98 ~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~-de~~~~~l~~~~d---~~i~vd~~~~~~~~R~~~R~~~~g 173 (208)
T 3c8u_A 98 QERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLF-DAPGWRDLTAIWD---VSIRLEVPMADLEARLVQRWLDHG 173 (208)
T ss_dssp CSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTB-CSTTGGGGGGTCS---EEEEECCCHHHHHHHHHHHHHHTT
T ss_pred CCceecccCCccccCCCCCceEEcCCCcEEEECCceecc-CCchhHHHHHhcC---EEEEEeCCHHHHHHHHHHHHHhcC
Confidence 2 456777733211 00122223 2233 388999999999999999964222
Q ss_pred CCCCCCHHHHHHHHHh
Q 007244 131 NLQGGKAAAVVNRMLQ 146 (611)
Q Consensus 131 ~~~~~vpeevi~rm~~ 146 (611)
...+++..++..
T Consensus 174 ----~t~~~~~~~~~~ 185 (208)
T 3c8u_A 174 ----LNHDAAVARAQG 185 (208)
T ss_dssp ----CCHHHHHHHHHT
T ss_pred ----CCHHHHHHHHHh
Confidence 355666666553
No 151
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=98.08 E-value=1e-05 Score=80.30 Aligned_cols=100 Identities=6% Similarity=-0.013 Sum_probs=63.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhcc---------------CC-----CC-----------------
Q 007244 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK---------------GK-----SG----------------- 62 (611)
Q Consensus 20 p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~---------------~~-----~~----------------- 62 (611)
+.+|.+.|++||||||+++.|++.++ +..++.|.+.. ++ +.
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~lg--~~~~d~~~~~~~a~~~g~~~~~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~ 91 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEELG--IHFYDDDILKLASEKSAVGEQFFRLADEKAGNNLLYRLGGGRKIDLHSKPSP 91 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHT--CEEECHHHHHHHHHCC------------------------------------
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHcC--CcEEcHHHHHHHHHHcCCCHHHHHHHHhhccccHHHHHhccccccccccccc
Confidence 46999999999999999999999999 44577665521 00 00
Q ss_pred -----cHHHH---HHHHHHHHHCCCcEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244 63 -----TKVQC---LTSASSALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (611)
Q Consensus 63 -----~~~~~---~~~~~~~L~~Gk~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~ 127 (611)
..+.+ ...+.+.|....++||+++.- .. .+.. +.. .....|||.+|.+++.+|+.+|..
T Consensus 92 ~~~~~~~~~~f~~~~~~i~~la~~~~~Vi~Grgg--g~---vl~~~~~~-~~~~~VfL~A~~e~r~~Ri~~~~~ 159 (223)
T 3hdt_A 92 NDKLTSPENLFKFQSEVMRELAESEPCIFVGRAA--GY---VLDQDEDI-ERLIRIFVYTDKVKKVQRVMEVDC 159 (223)
T ss_dssp ------HHHHHHHHHHHHHHHHHHSCEEEESTTH--HH---HHHHCTTC-CEEEEEEEECCHHHHHHHHHHHHT
T ss_pred ccccccHHHHHHHHHHHHHHHHhCCCEEEEeCCc--ch---hcccccCC-CCeEEEEEECCHHHHHHHHHHhcC
Confidence 00011 123344455455788887421 11 1111 222 235689999999999999987754
No 152
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=98.04 E-value=2.1e-05 Score=77.14 Aligned_cols=139 Identities=12% Similarity=0.088 Sum_probs=75.4
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecch----------------------hc----cCCCCcH----HH-
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDT----------------------IN----KGKSGTK----VQ- 66 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~----------------------i~----~~~~~~~----~~- 66 (611)
+++.++.|+||+||||||+++.|...++ ..+.+..+. +. .+.+... ..
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl~~L~g~~p-G~i~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 99 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLIKKLLNEFP-NYFYFSVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNEDFLEYDNYANNF 99 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHHHHHHHHST-TTEEECCCEECSCCCSSCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC-CcEEEeecccCCCCCcccccCCeEEECCHHHHHHhhhccchhhhhhccccc
Confidence 3467899999999999999999988663 111221110 00 0000000 00
Q ss_pred ---HHHHHHHHHHCCCcEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHH
Q 007244 67 ---CLTSASSALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVN 142 (611)
Q Consensus 67 ---~~~~~~~~L~~Gk~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~ 142 (611)
-...+.+.+..+..+++|. .+..-++++ .. . ......+++-+++..++.+|+..|.. ...+.+.+
T Consensus 100 ~g~~~~~i~~~l~~~~~~il~~-~lsggq~qR--~~i~-~~~~~~~ll~~~~~~~Lde~~~~~d~-------~~~~~i~~ 168 (218)
T 1z6g_A 100 YGTLKSEYDKAKEQNKICLFEM-NINGVKQLK--KSTH-IKNALYIFIKPPSTDVLLSRLLTRNT-------ENQEQIQK 168 (218)
T ss_dssp EEEEHHHHHHHHHTTCEEEEEE-CHHHHHHHT--TCSS-CCSCEEEEEECSCHHHHHHHHHHTCC-------CCHHHHHH
T ss_pred CCCcHHHHHHHHhCCCcEEEEe-cHHHHHHHH--HHhc-CCCcEEEEEeCcCHHHHHHHHHhcCC-------CCHHHHHH
Confidence 0134667788888888873 222222221 11 1 01123444446888999999998876 34455555
Q ss_pred HHHhhccCCCc--cCCccEEEEcCChhh
Q 007244 143 RMLQKKELPKL--SEGFSRITLCQNEND 168 (611)
Q Consensus 143 rm~~~~e~P~~--~EgFd~V~vv~~~~e 168 (611)
++......... ...|+.|+++++.++
T Consensus 169 ~l~~~~~~~~~~h~~~~d~iiv~~~~~e 196 (218)
T 1z6g_A 169 RMEQLNIELHEANLLNFNLSIINDDLTL 196 (218)
T ss_dssp HHHHHHHHHHHHTTSCCSEEEECSSHHH
T ss_pred HHHHHHHHHHhhcccCCCEEEECCCHHH
Confidence 55433211111 267888988865443
No 153
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=98.02 E-value=5.5e-06 Score=81.92 Aligned_cols=107 Identities=15% Similarity=0.162 Sum_probs=65.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecc----h----h----ccCC--CCcHH----------HHHHHHHHH
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQD----T----I----NKGK--SGTKV----------QCLTSASSA 74 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D----~----i----~~~~--~~~~~----------~~~~~~~~~ 74 (611)
++.+|++.|++||||||+++.|.+.++.....+... . + .+.. ...+. +....+..+
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~~~~~~~ep~~~t~~g~~ir~~l~~~~~~~~~~~~~llf~a~R~~~~~~I~pa 83 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQPNCKLLKFPERSTRIGGLINEYLTDDSFQLSDQAIHLLFSANRWEIVDKIKKD 83 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCSSEEEEESSCTTSHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHTTHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccceEEEecCCCChHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 467999999999999999999999987532222110 0 1 1111 11111 112456778
Q ss_pred HHCCCcEEEecCCCCHHHHH----------HHHH-h-CCCCCeEEEEEE-eCCHHHHHHHHHhc
Q 007244 75 LKKGKSVFLDRCNLEREQRT----------DFVK-L-GGPEVDVHAVVL-DLPAKLCISRSVKR 125 (611)
Q Consensus 75 L~~Gk~VIID~tnl~~~~R~----------~~~~-l-~~~~~~v~vV~L-d~p~e~~~~Rl~~R 125 (611)
|..|..||.|......-..+ .|+. + .....+=.+|+| ++|.+++.+|...|
T Consensus 84 L~~g~~VI~DRy~~S~~ayq~~~~l~~~~~~~l~~~~~~~~~PDlti~L~dv~pe~~~~R~~~~ 147 (216)
T 3tmk_A 84 LLEGKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQPDVGLLKPDLTLFLSTQDVDNNAEKSGFG 147 (216)
T ss_dssp HHTTCEEEEESCHHHHHHHHHTTCCTTCCHHHHHGGGTTSBCCSEEEEEECSCCSCGGGCCSSS
T ss_pred HHcCCEEEEeccHhHHHHHHHhcCCCHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHhccC
Confidence 89999999999443322111 1222 2 221123368899 99999999887544
No 154
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens}
Probab=98.02 E-value=1.4e-05 Score=83.01 Aligned_cols=127 Identities=10% Similarity=0.053 Sum_probs=81.3
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEE---eecchhccCCCCcHHHHHHHHHHHHHCCCcEEEecCCCCHHHH
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWAR---ICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNLEREQR 93 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~---Is~D~i~~~~~~~~~~~~~~~~~~L~~Gk~VIID~tnl~~~~R 93 (611)
...+.-|||+|| ||+|+.++|++.++..|.. ++.| +.++.+.. ...+++.+..|+.+|+|. +.
T Consensus 142 ~~~~RPvVl~GP---~k~~l~~~L~~~~P~~F~~~v~~~r~-i~~~~fis----~~~V~~vl~~Gk~~ILDI------d~ 207 (308)
T 3kfv_A 142 ASFKRPVVILGP---VADIAMQKLTAEMPDQFEIAETVSRT-DSPSKIIK----LDTVRVIAEKDKHALLDV------TP 207 (308)
T ss_dssp CSSCCCEEEEST---THHHHHHHHHHHCTTTEEECCCC---------CCC----HHHHHHHHHTTCEEEECC------CH
T ss_pred cCCCCeEEEeCc---cHHHHHHHHHHhCccccccccccccc-ccCCCeec----HHHHHHHHHCCCcEEEEE------CH
Confidence 445566899999 7999999999998865532 2233 44455543 367788899999999999 77
Q ss_pred HHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhcc--CCCccCCccEEE-EcCC
Q 007244 94 TDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKE--LPKLSEGFSRIT-LCQN 165 (611)
Q Consensus 94 ~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~e--~P~~~EgFd~V~-vv~~ 165 (611)
+....+ .....++.+++.+++.+++.+| ..|... +. ++.+++++++.. +-.....||+|+ ++++
T Consensus 208 QGa~~lk~~~~~pi~IFI~PPS~eeL~~r-r~R~~~------es-ee~~~r~~~aa~eiE~~~~~~FD~vI~VNDd 275 (308)
T 3kfv_A 208 SAIERLNYVQYYPIVVFFIPESRPALKAL-RQWLAP------AS-RRSTRRLYAQAQKLRKHSSHLFTATIPLNGT 275 (308)
T ss_dssp HHHHHHHHTTCCCEEEEEEESCHHHHHHH-HHHHST------TC-CCCHHHHHHHHHHHHHHHGGGCSEEEEECSS
T ss_pred HHHHHHHhcCCCCEEEEEeCCCHHHHHHH-HhcCCC------CC-HHHHHHHHHHHHHHHHhhhccCcEEEEcCCC
Confidence 777777 4444556777778889999887 555431 11 123455544321 122346699999 6754
No 155
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.94 E-value=3.4e-05 Score=80.75 Aligned_cols=37 Identities=14% Similarity=0.214 Sum_probs=31.9
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i 56 (611)
+|+.+|+|+||+||||||+++.|++.++ ..+|+.|.+
T Consensus 3 ~m~~~i~i~GptGsGKTtla~~La~~l~--~~iis~Ds~ 39 (323)
T 3crm_A 3 SLPPAIFLMGPTAAGKTDLAMALADALP--CELISVDSA 39 (323)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHSC--EEEEEECTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcC--CcEEeccch
Confidence 4678999999999999999999999988 566777654
No 156
>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Probab=97.93 E-value=9.4e-06 Score=83.92 Aligned_cols=137 Identities=14% Similarity=0.141 Sum_probs=76.0
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeE----Ee------------------ecchh----ccCCCCcHHH----
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWA----RI------------------CQDTI----NKGKSGTKVQ---- 66 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~----~I------------------s~D~i----~~~~~~~~~~---- 66 (611)
...+.+|+|+|| ||+|+.++|.+.++..+. +. +.+.+ .++.+.++.+
T Consensus 102 ~~~~r~ivl~GP---gK~tl~~~L~~~~~~~~~~~vs~TTR~~R~gE~~G~dY~Fv~s~eef~~~i~~g~flE~~~~~g~ 178 (295)
T 1kjw_A 102 VHYARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIQAHKFIEAGQYNSH 178 (295)
T ss_dssp CCSCCCEEEEST---THHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBEECSCHHHHHHHHHTTCEEEEEEETTE
T ss_pred CCCCCEEEEECC---CHHHHHHHHHhhCccceeeeeeecccCCCCccccCceeEecCCHHHHHHHHHCCCcEEEEEEcCc
Confidence 345678999998 799999999987642221 11 21111 1222222111
Q ss_pred ----HHHHHHHHHHCCCcEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeC-CHHHHHHHHHhcccccCCCCCCCHHHH
Q 007244 67 ----CLTSASSALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDL-PAKLCISRSVKRIEHEGNLQGGKAAAV 140 (611)
Q Consensus 67 ----~~~~~~~~L~~Gk~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~-p~e~~~~Rl~~R~~~~g~~~~~vpeev 140 (611)
-...+.+.+..|+.+|+|. +++.+..+ ...-++ ++||+.+ +.+++.+ +..|.+ .+++
T Consensus 179 ~YGt~~~~V~~~~~~G~~vildi------d~~g~~~l~~~~~~p-i~IfI~pps~~~L~~-L~~R~t---------~~~i 241 (295)
T 1kjw_A 179 LYGTSVQSVREVAEQGKHCILDV------SANAVRRLQAAHLHP-IAIFIRPRSLENVLE-INKRIT---------EEQA 241 (295)
T ss_dssp EEEEEHHHHHHHHHTTCEEEECC------CTTHHHHHHHTTCCC-EEEEECCSSHHHHHH-HCTTSC---------HHHH
T ss_pred EeeeeHHHHHHHHhcCCeEEEEe------CHHHHHHHHhcccCC-eEEEEECCCHHHHHH-HHhcCC---------HHHH
Confidence 1155788899999999998 34444333 222233 4556654 4677666 766654 2334
Q ss_pred HHHHHhhc-cCCCccCCccEEEEcCChhhHHHHHHHh
Q 007244 141 VNRMLQKK-ELPKLSEGFSRITLCQNENDVQAALDTY 176 (611)
Q Consensus 141 i~rm~~~~-e~P~~~EgFd~V~vv~~~~evd~av~~~ 176 (611)
-+|+.+.. .+....+.||.+++++ +++.+...+
T Consensus 242 ~~rl~~a~~~e~~~~~~fd~vivNd---~le~a~~~l 275 (295)
T 1kjw_A 242 RKAFDRATKLEQEFTECFSAIVEGD---SFEEIYHKV 275 (295)
T ss_dssp HHHHHHHHHHHHHHGGGCSEEECCS---SHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccCeEEEECc---CHHHHHHHH
Confidence 34444432 1222345689886654 455555443
No 157
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.90 E-value=2.6e-05 Score=81.59 Aligned_cols=108 Identities=19% Similarity=0.167 Sum_probs=65.7
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHHcC-----CCeEEeecchhcc--------CC---CC---cH-HHHHHHHHHHHH
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA-----RPWARICQDTINK--------GK---SG---TK-VQCLTSASSALK 76 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~-----~~~~~Is~D~i~~--------~~---~~---~~-~~~~~~~~~~L~ 76 (611)
...|.+|.|+|++||||||+++.|...+. .....++.|.+.. +. ++ .. ...+......+.
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~~~~~~l~~~~~~~~~g~P~~~D~~~l~~~L~~L~ 168 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFLYSNAKLEKQGLMKRKGFPESYDMPSLLRVLNAIK 168 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHHHHHHTTCGGGTTSGGGBCHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccccchhhhhhHHHHhhccCcccccHHHHHHHHHhhh
Confidence 56788999999999999999999987654 2356678777631 11 11 10 122233344555
Q ss_pred CCC-c--------------------------EEEecCCCCHHHH-----HHHHHh-CCCCCeEEEEEEeCCHHHHHHHHH
Q 007244 77 KGK-S--------------------------VFLDRCNLEREQR-----TDFVKL-GGPEVDVHAVVLDLPAKLCISRSV 123 (611)
Q Consensus 77 ~Gk-~--------------------------VIID~tnl~~~~R-----~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~ 123 (611)
.|+ . +|+|+.++-...+ ..|..+ ...+ ..||+++|.+++++|..
T Consensus 169 ~g~~~v~~P~yd~~~~~r~~~~~~~v~~~dIVIvEGi~lL~~~~~~~~~~~~~~l~~~~D---~~I~Vda~~d~~~~R~i 245 (321)
T 3tqc_A 169 SGQRNVRIPVYSHHYYDIVRGQYEIVDQPDIVILEGLNILQTGVRKTLQQLQVFVSDFFD---FSLFVDAQAQVIQKWYI 245 (321)
T ss_dssp TTCSSEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCCCSSSSSCCCCGGGGCS---EEEEEECCHHHHHHHHH
T ss_pred ccccccccchhhhhccccccCceeeccCCCEEEEEccccccccccccccchhhhhhhhcC---eEEEEECCHHHHHHHHH
Confidence 554 2 4666644322110 001111 1122 38899999999999999
Q ss_pred hccc
Q 007244 124 KRIE 127 (611)
Q Consensus 124 ~R~~ 127 (611)
+|..
T Consensus 246 ~Rd~ 249 (321)
T 3tqc_A 246 DRVL 249 (321)
T ss_dssp HHHH
T ss_pred Hhcc
Confidence 9974
No 158
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A
Probab=97.86 E-value=2.7e-05 Score=83.59 Aligned_cols=133 Identities=9% Similarity=0.017 Sum_probs=82.6
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCC-CcHH--HHHHHHHHHHHCCCcEEEecCCCCHHHH
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKS-GTKV--QCLTSASSALKKGKSVFLDRCNLEREQR 93 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~-~~~~--~~~~~~~~~L~~Gk~VIID~tnl~~~~R 93 (611)
+..+.+|||+||+| +|+.++|++.++..|.. ..-.-+.++. +... --...+++.+..|+.+|+|. +.
T Consensus 229 ~~~~r~iVlsGPsg---~tl~~~L~~~~p~~~~~-~tr~pR~gE~dG~~Y~Fv~~~~V~~~~~~Gk~~iLdI------d~ 298 (391)
T 3tsz_A 229 AGFLRPVTIFGPIA---DVAREKLAREEPDIYQI-AKSEPRDAGTDQRSSGIIRLHTIKQIIDQDKHALLDV------TP 298 (391)
T ss_dssp CSSCCCEEEESTTH---HHHHHHHHHHCTTTEEE-CCCCCCCSSSCCC--CCCCHHHHHHHHTTTCEEEECC------CH
T ss_pred CCCCCEEEEECCCH---HHHHHHHHhhCcccccc-ccCCCCCcccCCccCCcCcHHHHHHHHHcCCEEEEEe------CH
Confidence 45778999999998 89999999988755533 2111111110 0000 02377889999999999999 67
Q ss_pred HHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhcc--CCCccCCccEEEEcCChh
Q 007244 94 TDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKE--LPKLSEGFSRITLCQNEN 167 (611)
Q Consensus 94 ~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~e--~P~~~EgFd~V~vv~~~~ 167 (611)
+....+ .....++.+++.+++.+++.+| ..|... +. ++.+++++++.. +-.....||+|+++++.+
T Consensus 299 qg~~~l~~~~~~p~~IFI~PPS~~~L~~~-~~r~~~------~s-~e~~~~~~~~a~~~e~~~~~~fd~vivNd~l~ 367 (391)
T 3tsz_A 299 NAVDRLNYAQWYPIVVFLNPDSKQGVKTM-RMRLCP------ES-RKSARKLYERSHKLRKNNHHLFTTTINLNSMN 367 (391)
T ss_dssp HHHHHHHHTTCCCEEEEEECCCHHHHHHH-HHHHCS------SC-CCCHHHHHHHHHHHHHHHGGGCSEEEECCTTC
T ss_pred HHHHHHHhCCCCCEEEEEeCcCHHHHHHH-HhcCCC------CC-HHHHHHHHHHHHHHHHhccccCcEEEECCCcH
Confidence 776666 4444556666677788888886 555431 11 123344443321 222346799999987643
No 159
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=97.84 E-value=9.7e-06 Score=83.42 Aligned_cols=40 Identities=20% Similarity=0.247 Sum_probs=29.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEeecchhcc
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINK 58 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~~---~~~~~Is~D~i~~ 58 (611)
++.+|.|.|++||||||+++.|.+.++ ..+.+|+.|.+..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r 46 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHR 46 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhhc
Confidence 467899999999999999999988765 3356788888763
No 160
>2vri_A Non-structural protein 3; RNA replication, nucleotide-binding, endonuclease, macro domain, viral protein, ATP-binding, exonuclease; 1.8A {Human coronavirus NL63}
Probab=97.83 E-value=1.9e-06 Score=82.58 Aligned_cols=69 Identities=9% Similarity=-0.017 Sum_probs=48.8
Q ss_pred cccceeecccccccccccCCCCcchhhhcccCCCCCCCccccccCccCCCCCChHHHHHHHHHHHHHHHHhcCCeEEEEe
Q 007244 240 EGQEITSLLSDAAGEEVKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGNARLVLV 319 (611)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~SiAfPaIStGi~gfP~~~aa~Iiv~tv~~f~~~~~~i~iV~v 319 (611)
.+-|.+.|.|+. . ....+...-.+|+.. . .|||||+||||+||||.++|++++++++.+ ..+.++.+
T Consensus 92 ~VIH~vgP~~~~--~-~~~~L~~~y~~~L~~---~--~SIAfP~IstG~~g~p~~~aa~i~~~~v~~-----~~V~~v~f 158 (174)
T 2vri_A 92 NVFNVVGPRTGK--H-EHSLLVEAYNSILFE---N--GIPLMPLLSCGIFGVRIENSLKALFSCDIN-----KPLQVFVY 158 (174)
T ss_dssp EEEEEECCCSST--T-HHHHHHHHHHHHHHS---S--SCEEEECSSCGGGCCCHHHHHHHHHTSCCC-----SCEEEEEC
T ss_pred EEEEEcCCCCCc--c-hHHHHHHHHHHHHhh---C--CcEEeCccccCCCCCCHHHHHHHHHHHHhh-----CcEEEEEc
Confidence 788888888853 2 212222222334443 2 399999999999999999999999999965 45667665
Q ss_pred ec
Q 007244 320 DL 321 (611)
Q Consensus 320 d~ 321 (611)
+.
T Consensus 159 ~~ 160 (174)
T 2vri_A 159 SS 160 (174)
T ss_dssp SH
T ss_pred CH
Confidence 43
No 161
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.81 E-value=0.00018 Score=69.16 Aligned_cols=41 Identities=22% Similarity=0.266 Sum_probs=31.3
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhc
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN 57 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~ 57 (611)
..++.+|.|+|++||||||+++.+...++..+..+++|.+.
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~~~ 43 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGERVALLPMDHYY 43 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGGCB
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecCccc
Confidence 35678999999999999999999998765224457777653
No 162
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.75 E-value=0.00011 Score=75.86 Aligned_cols=40 Identities=20% Similarity=0.205 Sum_probs=30.7
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHHcC-----CCeEEeecchh
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA-----RPWARICQDTI 56 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~-----~~~~~Is~D~i 56 (611)
...+.+|.|+|++||||||+++.|...++ .....++.|.+
T Consensus 77 ~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~ 121 (308)
T 1sq5_A 77 QRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF 121 (308)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCc
Confidence 36678999999999999999999988654 22445665554
No 163
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}
Probab=97.73 E-value=3.9e-05 Score=84.08 Aligned_cols=132 Identities=8% Similarity=0.002 Sum_probs=79.4
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHH---HHHHHHHHHHHCCCcEEEecCCCCHHHH
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKV---QCLTSASSALKKGKSVFLDRCNLEREQR 93 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~---~~~~~~~~~L~~Gk~VIID~tnl~~~~R 93 (611)
+..+.+|||+||+|+| +.++|++.++..|...... -+.++.--.. .-...+++.+..|+.+|+|. +.
T Consensus 221 ~~~~r~iVlsGPsG~G---l~~~Ll~~~p~~f~s~~TR-pR~gE~dG~~Y~FTs~~~V~~vl~~Gk~~iLdI------d~ 290 (468)
T 3shw_A 221 AGFLRPVTIFGPIADV---AREKLAREEPDIYQIAKSE-PRDAGTDQRSSGIIRLHTIKQIIDQDKHALLDV------TP 290 (468)
T ss_dssp CSSCCCEEEESTTHHH---HHHHHHHHCTTTEEECCCB-C----------CBCCHHHHHHHHTTTCEEEECC------CH
T ss_pred CCCCCEEEEECCCHHH---HHHHHHHhCCCceeeecCC-CCCcccccccCCcccHHHHHHHHHCCCeEEEEe------CH
Confidence 4577899999999999 9999999887555332211 1221100000 12377889999999999999 66
Q ss_pred HHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhcc--CCCccCCccEEEEcCCh
Q 007244 94 TDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKE--LPKLSEGFSRITLCQNE 166 (611)
Q Consensus 94 ~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~e--~P~~~EgFd~V~vv~~~ 166 (611)
+....+ .....++.+++.+++.+++.+| .+|... +. ++.+++++++.. +-.....||+|+++++.
T Consensus 291 qg~~~l~~~~~~p~~IFI~PPS~e~L~~~-~~rl~~------~s-ee~~~r~~~~a~~~e~~~~~~fD~vIvNddl 358 (468)
T 3shw_A 291 NAVDRLNYAQWYPIVVFLNPDSKQGVKTM-RMRLCP------ES-RKSARKLYERSHKLRKNNHHLFTTTINLNSM 358 (468)
T ss_dssp HHHHHHHHTTCCCEEEEEECSCHHHHHHH-HHHHCT------TC-CCCHHHHHHHHHHHHHHHGGGCSEEEECBTT
T ss_pred HHHHHHHhcCCCCEEEEEeCcCHHHHHHH-HhccCC------CC-HHHHHHHHHHHHHHHHhhhccCCEEEECCCc
Confidence 776666 3334455666667777888764 333321 11 123444444321 22335679999998654
No 164
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.72 E-value=0.00051 Score=71.51 Aligned_cols=39 Identities=18% Similarity=0.229 Sum_probs=32.5
Q ss_pred cCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh
Q 007244 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (611)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i 56 (611)
...+|.+|+|+||+||||||++..|++.++ ..+|+.|..
T Consensus 6 ~~~~~~~i~i~GptgsGKt~la~~La~~~~--~~iis~Ds~ 44 (316)
T 3foz_A 6 KASLPKAIFLMGPTASGKTALAIELRKILP--VELISVDSA 44 (316)
T ss_dssp -CCCCEEEEEECCTTSCHHHHHHHHHHHSC--EEEEECCTT
T ss_pred cCCCCcEEEEECCCccCHHHHHHHHHHhCC--CcEEecccc
Confidence 456788999999999999999999999987 556776653
No 165
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=97.66 E-value=0.00058 Score=71.20 Aligned_cols=36 Identities=25% Similarity=0.324 Sum_probs=30.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i 56 (611)
++.+|+|+||+||||||++..|++.++ ..+|+.|.+
T Consensus 2 ~~~~i~i~GptgsGKt~la~~La~~~~--~~iis~Ds~ 37 (322)
T 3exa_A 2 KEKLVAIVGPTAVGKTKTSVMLAKRLN--GEVISGDSM 37 (322)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHTTT--EEEEECCGG
T ss_pred CCcEEEEECCCcCCHHHHHHHHHHhCc--cceeecCcc
Confidence 356899999999999999999999987 556777755
No 166
>2eee_A Uncharacterized protein C6ORF130; macro domain, A1PP domain, ADP-ribose binding, rossmann fold, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l8r_A*
Probab=97.66 E-value=1.9e-05 Score=73.57 Aligned_cols=66 Identities=12% Similarity=0.061 Sum_probs=47.3
Q ss_pred cccccceeecc-cccccccccCCCCcchhhhcccCCCCCCCccccccCccCCCCCChHHHHHHHHHHHH
Q 007244 238 CLEGQEITSLL-SDAAGEEVKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVE 305 (611)
Q Consensus 238 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~~~~~~~SiAfPaIStGi~gfP~~~aa~Iiv~tv~ 305 (611)
...+-|.+.+. |.. ....+.....-..++..+.+++++|||||+||||+||||.++++++|.+++.
T Consensus 72 ~~~Vih~v~~~~~~~--~~~~~~l~~~l~~~l~~a~~~~~~sIa~P~IgtG~~G~~~~~v~~ii~~~~~ 138 (149)
T 2eee_A 72 GRYIYYLITKKRASH--KPTYENLQKSLEAMKSHCLKNGVTDLSMPRIGCGLDRLQWENVSAMIEEVFE 138 (149)
T ss_dssp SSEEEEEEEESSTTS--CCCHHHHHHHHHHHHHHHHHHTCCEEECCCCCCTTTTCCHHHHHHHHHHHHT
T ss_pred CCEEEEEEecCCCCC--CCCHHHHHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCHHHHHHHHHHHhc
Confidence 45677777776 432 1111222233444567788889999999999999999999999999987664
No 167
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.65 E-value=0.00016 Score=69.85 Aligned_cols=30 Identities=20% Similarity=0.221 Sum_probs=24.2
Q ss_pred cCCCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (611)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~ 45 (611)
.-.+..++.|+||+||||||+++.+...+.
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 345667999999999999999999988764
No 168
>2jyc_A Uncharacterized protein C6ORF130; macro domain, A1PP domain, BC011709, protein structure initiative, PSI-2; NMR {Homo sapiens} PDB: 2lgr_A
Probab=97.64 E-value=2.1e-05 Score=74.31 Aligned_cols=66 Identities=12% Similarity=0.072 Sum_probs=46.4
Q ss_pred ccccceeecc-cccccccccCCCCcchhhhcccCCCCCCCccccccCccCCCCCChHHHHHHHHHHHHH
Q 007244 239 LEGQEITSLL-SDAAGEEVKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEE 306 (611)
Q Consensus 239 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~~~~~~~SiAfPaIStGi~gfP~~~aa~Iiv~tv~~ 306 (611)
..+-|.+.+. |.. ....+.....-..++..+.+++++|||||+||||+||||.++++++|.+++.+
T Consensus 84 ~~Vih~vg~~~~~~--~~~~~~l~~~l~~~l~~a~~~~~~sIa~P~IgtGi~G~p~~~v~~ii~~~~~~ 150 (160)
T 2jyc_A 84 RYIYYLITKKRASH--KPTYENLQKSLEAMKSHCLKNGVTDLSMPRIGCGLDRLQWENVSAMIEEVFEA 150 (160)
T ss_dssp EEEEEEECSSSTTS--CCCHHHHHHHHHHHHHHHHHHTCCEEEEESCCSSCSSSCHHHHHHHHHHHHTT
T ss_pred cEEEEEecCCCCCC--CChHHHHHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCHHHHHHHHHHHHhh
Confidence 5566766665 332 11112222233445567788899999999999999999999999999887643
No 169
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.59 E-value=0.00051 Score=68.11 Aligned_cols=28 Identities=36% Similarity=0.596 Sum_probs=25.0
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~ 45 (611)
.++.+|.|+|++||||||+++.++..++
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~lG 50 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELLG 50 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4568999999999999999999988766
No 170
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=97.56 E-value=7.3e-05 Score=73.89 Aligned_cols=27 Identities=22% Similarity=0.279 Sum_probs=24.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSSA 45 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~~ 45 (611)
+|.+|++.|++||||||+++.|++.+.
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 367999999999999999999999884
No 171
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.55 E-value=0.00014 Score=74.58 Aligned_cols=49 Identities=22% Similarity=0.327 Sum_probs=38.8
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHH
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKV 65 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~ 65 (611)
...|..++|.||||+|||++|+.+++.++.+++.++...+...+.+...
T Consensus 33 ~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~ 81 (293)
T 3t15_A 33 IKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPA 81 (293)
T ss_dssp CCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhH
Confidence 4557789999999999999999999999988888887777666655443
No 172
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=97.55 E-value=0.00028 Score=74.33 Aligned_cols=36 Identities=28% Similarity=0.451 Sum_probs=31.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i 56 (611)
|+.+|+|+||+||||||+|+.|++.++ ..+|+.|.+
T Consensus 6 m~~lI~I~GptgSGKTtla~~La~~l~--~~iis~Ds~ 41 (340)
T 3d3q_A 6 KPFLIVIVGPTASGKTELSIEVAKKFN--GEIISGDSM 41 (340)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTT--EEEEECCSS
T ss_pred CCceEEEECCCcCcHHHHHHHHHHHcC--Cceeccccc
Confidence 457999999999999999999999988 667888776
No 173
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.53 E-value=0.00011 Score=72.28 Aligned_cols=27 Identities=30% Similarity=0.481 Sum_probs=24.1
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRS 43 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~ 43 (611)
..++.+|.|.|++||||||+++.|...
T Consensus 17 ~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 17 GTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 456789999999999999999998876
No 174
>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A
Probab=97.50 E-value=0.00028 Score=73.91 Aligned_cols=129 Identities=14% Similarity=0.056 Sum_probs=78.8
Q ss_pred EEEEcCCCCcHHH-------HHHHHHHHcCCC--eEEeecchhccC-----------------CCCcHHHHHHHHHH---
Q 007244 23 VIMVGAPGSGKST-------FCEHVMRSSARP--WARICQDTINKG-----------------KSGTKVQCLTSASS--- 73 (611)
Q Consensus 23 IvLvG~PGSGKST-------~A~~L~~~~~~~--~~~Is~D~i~~~-----------------~~~~~~~~~~~~~~--- 73 (611)
|+|+||.+.|=-+ +...+.++++.. +.++..|.-..+ ......++...+.+
T Consensus 145 vvlvGP~~~g~~~td~m~~~l~d~l~~~F~~~i~~tR~~~d~~~~~r~~~~~~~~~~~~e~~~~~~~~~ev~seVe~i~~ 224 (337)
T 4dey_A 145 VVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRISITRVTADISLAKRSVLNNPSKHAIIERSNTRSSLAEVQSEIERIFE 224 (337)
T ss_dssp EEEECSSCTTSHHHHHHHHHHHHHHHHHTTTSEEEEEECSCGGGC-------------------CCCHHHHHHHHHHHHH
T ss_pred eEEECCccccchhHHHHHHHHHHhhHHhcCCccceEeecchhhhcchhhhhcccchhhhcccccccchHHHHhHHHHHHH
Confidence 8999999999764 555566788755 444444332111 11122334344444
Q ss_pred HHHCCCcEEEecCCCCHHHHH-HHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHH-Hhhc-c
Q 007244 74 ALKKGKSVFLDRCNLEREQRT-DFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRM-LQKK-E 149 (611)
Q Consensus 74 ~L~~Gk~VIID~tnl~~~~R~-~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm-~~~~-e 149 (611)
..+.|+.||+|. +.+ +...+ +.....+.+++.+++.+++.+|+..|++. . ++.+.+. .+.- +
T Consensus 225 v~~~Gk~vILDI------DvQnGa~qlk~~~~~~i~IFI~PPS~eeLe~RL~~RGt~-------~-~~rl~~al~~ae~E 290 (337)
T 4dey_A 225 LARTLQLVVLDA------DTINHPAQLSKTSLAPIVVYVKISSPKVLQRLIKSRGKS-------Q-AKHLNVQMVAADKL 290 (337)
T ss_dssp HTTTCCEEEEEE------TTCCSGGGTTTSSCCCEEEEECCSCHHHHHHHHHTTCHH-------H-HTTHHHHHHHHHHH
T ss_pred HHhCCCEEEEEe------CcHHHHHHHHhcCCCCEEEEEECcCHHHHHHHHHhCCch-------H-HHHHHHHHHHHHHH
Confidence 445889999999 565 66666 55555666777788899999999999762 1 2222222 2211 1
Q ss_pred CCCccCCccEEEEcCC
Q 007244 150 LPKLSEGFSRITLCQN 165 (611)
Q Consensus 150 ~P~~~EgFd~V~vv~~ 165 (611)
.-.....||+|+++++
T Consensus 291 ~~~~~~~FDyvIVNDd 306 (337)
T 4dey_A 291 AQCPPELFDVILDENQ 306 (337)
T ss_dssp HHSCGGGCSEEECCSS
T ss_pred HhhCcccCCEEEECCC
Confidence 2223567999988854
No 175
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=97.50 E-value=0.00038 Score=80.26 Aligned_cols=137 Identities=14% Similarity=0.136 Sum_probs=79.3
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCe---------------------EEe-ecchh----ccCCCCcHHH----
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPW---------------------ARI-CQDTI----NKGKSGTKVQ---- 66 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~---------------------~~I-s~D~i----~~~~~~~~~~---- 66 (611)
..++.+|||+|| ||+|+.++|++.+...+ ..+ +.+.+ .++.+.++.+
T Consensus 528 ~~~~r~vvl~GP---~K~tl~~~L~~~~~~~~~~~vs~TTR~~r~gE~~G~dY~Fv~s~~~f~~~i~~~~flE~~~~~g~ 604 (721)
T 2xkx_A 528 VHYARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIRAHKFIEAGQYNSH 604 (721)
T ss_pred CCCCCEEEEECC---CHHHHHHHHHHhCccceeecccccccCCCCCccCCceeEEecCHHHHHHHHhcCCceEEEEECCc
Confidence 345688999999 39999999998764211 112 22222 1233332211
Q ss_pred ----HHHHHHHHHHCCCcEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeC-CHHHHHHHHHhcccccCCCCCCCHHHH
Q 007244 67 ----CLTSASSALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDL-PAKLCISRSVKRIEHEGNLQGGKAAAV 140 (611)
Q Consensus 67 ----~~~~~~~~L~~Gk~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~-p~e~~~~Rl~~R~~~~g~~~~~vpeev 140 (611)
-...+++.++.|+.+|+|. +++.+..+ ...-++ ++||+.+ +.+++.+ +..|.+ .+++
T Consensus 605 ~YGt~~~~v~~~~~~g~~~ildi------~~~~~~~l~~~~~~p-~~ifi~pps~~~L~~-l~~R~t---------~~~~ 667 (721)
T 2xkx_A 605 LYGTSVQSVREVAEQGKHCILDV------SANAVRRLQAAHLHP-IAIFIRPRSLENVLE-INKRIT---------EEQA 667 (721)
T ss_pred cceeeHHHHHHHHHCCCcEEEeC------CHHHHHHHHhcccCC-EEEEEeCCcHHHHHH-HhccCC---------HHHH
Confidence 1256888999999999998 45555444 222233 4556655 4566655 777754 2344
Q ss_pred HHHHHhhc-cCCCccCCccEEEEcCChhhHHHHHHHh
Q 007244 141 VNRMLQKK-ELPKLSEGFSRITLCQNENDVQAALDTY 176 (611)
Q Consensus 141 i~rm~~~~-e~P~~~EgFd~V~vv~~~~evd~av~~~ 176 (611)
-+|+.+.. .+....+.||++++++ +++.+...+
T Consensus 668 ~~rl~~a~~~e~~~~~~fd~vi~Nd---~l~~a~~~l 701 (721)
T 2xkx_A 668 RKAFDRATKLEQEFTECFSAIVEGD---SFEEIYHKV 701 (721)
T ss_pred HHHHHHHHHHHHhccccCcEEEECc---CHHHHHHHH
Confidence 45555442 2333456799987764 455554443
No 176
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.50 E-value=0.00017 Score=78.52 Aligned_cols=59 Identities=15% Similarity=0.152 Sum_probs=47.7
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHHHHHHHHH
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSAL 75 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L 75 (611)
-..|.=|+|.||||+|||++|++++.+++.++..++...+...+.+.....+..+....
T Consensus 212 ~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~~Gese~~ir~~F~~A 270 (437)
T 4b4t_L 212 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYA 270 (437)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSSSSHHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccccchHHHHHHHHHHHHH
Confidence 45677899999999999999999999999888889888888888887665544444333
No 177
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.49 E-value=0.00015 Score=78.01 Aligned_cols=60 Identities=17% Similarity=0.243 Sum_probs=48.5
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHHHHHHHHHH
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALK 76 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L~ 76 (611)
-..|.=|+|.||||+|||++|++++.+++.++..++...+...+.+..+..+..+....+
T Consensus 179 i~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~vGese~~vr~lF~~Ar 238 (405)
T 4b4t_J 179 IAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAR 238 (405)
T ss_dssp CCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSSTTHHHHHHHHHHHHHH
T ss_pred CCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccccchHHHHHHHHHHHHH
Confidence 445677999999999999999999999998888899888888888877665544444443
No 178
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.48 E-value=0.00018 Score=77.98 Aligned_cols=56 Identities=18% Similarity=0.243 Sum_probs=45.8
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHHHHHH
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSAS 72 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~~~~~ 72 (611)
-..|.=|+|.||||+|||++|++++..++.++..++...+...+.+.....+..+.
T Consensus 203 ~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~Ge~e~~ir~lF 258 (428)
T 4b4t_K 203 IDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVF 258 (428)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSCSHHHHHHHHHH
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccccchhHHHHHHHH
Confidence 45577899999999999999999999999888888888887778777655444333
No 179
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.48 E-value=0.00015 Score=78.73 Aligned_cols=56 Identities=14% Similarity=0.234 Sum_probs=46.6
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHHHHHH
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSAS 72 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~~~~~ 72 (611)
-+.|.-|+|.||||+|||++|++++.+++.++..++...+...+.+.....+..+.
T Consensus 212 ~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~vGese~~ir~lF 267 (434)
T 4b4t_M 212 IRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAF 267 (434)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSCSSHHHHHHHHHH
T ss_pred CCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhcccchHHHHHHHHH
Confidence 45578899999999999999999999999888889988888888887665444433
No 180
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.41 E-value=0.00025 Score=76.82 Aligned_cols=61 Identities=20% Similarity=0.239 Sum_probs=49.1
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHHHHHHHHHHC
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKK 77 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L~~ 77 (611)
-+.|.=|+|.||||+|||++|++++.+++.++..++...+...+.+..+..+..+....+.
T Consensus 213 i~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~vGesek~ir~lF~~Ar~ 273 (437)
T 4b4t_I 213 IKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGE 273 (437)
T ss_dssp CCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSSSSHHHHHHHHHHHHHHH
T ss_pred CCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhccCchHHHHHHHHHHHHHh
Confidence 3556789999999999999999999999988888998888888888776655444444433
No 181
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.40 E-value=0.00022 Score=77.84 Aligned_cols=59 Identities=14% Similarity=0.213 Sum_probs=48.2
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHHHHHHHHH
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSAL 75 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L 75 (611)
-..|.-|+|.||||+|||++|++++.+++.++..++...+...+.+..+..+..+....
T Consensus 240 i~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~vGesek~ir~lF~~A 298 (467)
T 4b4t_H 240 IDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMA 298 (467)
T ss_dssp CCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCSSSHHHHHHHHHHHHH
T ss_pred CCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcccCCHHHHHHHHHHHHH
Confidence 35678899999999999999999999999888889988888888887766554444333
No 182
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.39 E-value=0.00035 Score=70.19 Aligned_cols=69 Identities=17% Similarity=0.300 Sum_probs=48.4
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHHHHHHHHHHCC--CcEEEecC
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKG--KSVFLDRC 86 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L~~G--k~VIID~t 86 (611)
..+.-++|.|+||+||||+|+.+++.++.++..++...+.....+........+...+..+ ..++||..
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi 119 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEI 119 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCCCSTTHHHHHHHHHHHHHHHTCSEEEEEETT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHHhccchHHHHHHHHHHHHHHcCCeEEEEECH
Confidence 3455689999999999999999999999888778777776665555444433333333333 34677763
No 183
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.21 E-value=0.00077 Score=66.46 Aligned_cols=69 Identities=17% Similarity=0.261 Sum_probs=44.1
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHHHHH-HHHHHC-CCcEEEecC
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSA-SSALKK-GKSVFLDRC 86 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~~~~-~~~L~~-Gk~VIID~t 86 (611)
..+.-++|.|+||+||||+|+.+++.++.++..++...+.....+........+ ..+... +..++||..
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~iDei 107 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEI 107 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSSTTHHHHHHHHHHHHHHHTCSEEEEEECC
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhccChhHHHHHHHHHHHHhcCCeEEEEeCc
Confidence 345568999999999999999999999988877776555443333322222222 222222 234667764
No 184
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.20 E-value=0.00068 Score=68.55 Aligned_cols=68 Identities=15% Similarity=0.324 Sum_probs=47.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHHHHHHHHHH--CCCcEEEecC
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALK--KGKSVFLDRC 86 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L~--~Gk~VIID~t 86 (611)
.+.-++|.||||+||||+|+.++..++.++..++...+.....+........+..... .+..++||..
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi 122 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEV 122 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSSSCSCHHHHHHHHHHHHHHTCSEEEEEETG
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhcccchHHHHHHHHHHHHHHcCCcEEEeccH
Confidence 4567899999999999999999999987777777666655555544443333333332 2345778873
No 185
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.17 E-value=0.00057 Score=70.61 Aligned_cols=68 Identities=15% Similarity=0.311 Sum_probs=49.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHHHHHHHHHHCC--CcEEEecC
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKG--KSVFLDRC 86 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L~~G--k~VIID~t 86 (611)
.+.-|+|.||||+|||++|+.+++..+.+++.++...+...+.+........+....... ..++||..
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEi 119 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQV 119 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTTTGGGHHHHHHHHHHHHHHTSSEEEEEECG
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhcccchHHHHHHHHHHHHHhcCCeEEEechh
Confidence 356799999999999999999999999888888877776666666555444444333333 35777873
No 186
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.17 E-value=0.00085 Score=66.54 Aligned_cols=42 Identities=24% Similarity=0.378 Sum_probs=33.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCC
Q 007244 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKS 61 (611)
Q Consensus 20 p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~ 61 (611)
|.-++|.|+||+||||+|+.++..++.+++.++...+.....
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~~~ 86 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFV 86 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTSCC
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHHhh
Confidence 445899999999999999999999887787777655544333
No 187
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.15 E-value=0.00061 Score=70.69 Aligned_cols=68 Identities=16% Similarity=0.276 Sum_probs=46.8
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHc-CCCeEEeecchhccCCCCcHHHHHHHHHHHHHCC--CcEEEec
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSS-ARPWARICQDTINKGKSGTKVQCLTSASSALKKG--KSVFLDR 85 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~-~~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L~~G--k~VIID~ 85 (611)
..+.-|+|.||||+|||++|+.++..+ +..+..++...+...+.+........+....... ..++||.
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~~~~g~~~~~~~~lf~~a~~~~~~vl~iDE 113 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDE 113 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCCSSCCSCHHHHHHHHHHHHHTSSEEEEEET
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHhhhhhHHHHHHHHHHHHHHhcCCcEEEeec
Confidence 345779999999999999999999998 6667777766665555555444444333333322 3577886
No 188
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.14 E-value=0.0024 Score=64.60 Aligned_cols=94 Identities=14% Similarity=0.200 Sum_probs=56.5
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHcC-------CCeEEeecchhccCCCCcHHHHHHHHHHHHHCCCcEEEecCC---
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSSA-------RPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCN--- 87 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~-------~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L~~Gk~VIID~tn--- 87 (611)
..+.-++|.|+||+|||++|+.+++.++ .++..++...+.....+........+... ..+..++||...
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~-~~~~vl~iDEid~l~ 143 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKR-AMGGVLFIDEAYYLY 143 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTCCSSTTCHHHHHHHHHHH-HTTSEEEEETGGGSC
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhhhhcccccHHHHHHHHHh-cCCCEEEEEChhhhc
Confidence 4445689999999999999999888763 25677777776655555443322222222 246678899853
Q ss_pred -------CCHHHHHHHHHh-CCCCCeEEEEEEe
Q 007244 88 -------LEREQRTDFVKL-GGPEVDVHAVVLD 112 (611)
Q Consensus 88 -------l~~~~R~~~~~l-~~~~~~v~vV~Ld 112 (611)
........++.+ ......+.+|...
T Consensus 144 ~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~ 176 (309)
T 3syl_A 144 RPDNERDYGQEAIEILLQVMENNRDDLVVILAG 176 (309)
T ss_dssp CCC---CCTHHHHHHHHHHHHHCTTTCEEEEEE
T ss_pred cCCCcccccHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 244444555555 3333333444443
No 189
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.09 E-value=0.00096 Score=69.26 Aligned_cols=40 Identities=18% Similarity=0.129 Sum_probs=31.1
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHHcC-----CCeEEeecchh
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA-----RPWARICQDTI 56 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~-----~~~~~Is~D~i 56 (611)
..++.+|.|+|++||||||+++.|...+. .....+.+|.+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~ 131 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGF 131 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGG
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCcc
Confidence 56789999999999999999999887543 12455666654
No 190
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.96 E-value=0.00083 Score=70.67 Aligned_cols=67 Identities=16% Similarity=0.319 Sum_probs=45.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHHHHHHHHHH--CCCcEEEecC
Q 007244 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALK--KGKSVFLDRC 86 (611)
Q Consensus 20 p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L~--~Gk~VIID~t 86 (611)
+.-|+|.||||+|||++|+.++..++.+++.++...+...+.+........+..... ....++||..
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEi 152 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQV 152 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSCC---CHHHHHHHHHHHHHTSSEEEEEECG
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhhhcchHHHHHHHHHHHHHHcCCeEEEEech
Confidence 456889999999999999999999998887787766655555544444433333333 2345778863
No 191
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.95 E-value=0.0015 Score=68.55 Aligned_cols=68 Identities=15% Similarity=0.277 Sum_probs=47.9
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHHHHHHHHHHC--CCcEEEec
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKK--GKSVFLDR 85 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L~~--Gk~VIID~ 85 (611)
..+.-|+|.|+||+||||+|+.+++.++.+++.++...+...+.+........+...... +..++||.
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDE 184 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDE 184 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCSSTTHHHHHHHHHHHHHHHTCSEEEEEET
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhccccchHHHHHHHHHHHHHhcCCeEEEEeC
Confidence 446679999999999999999999999888878887666655555444433333333332 34577886
No 192
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.95 E-value=0.00034 Score=65.63 Aligned_cols=81 Identities=15% Similarity=0.064 Sum_probs=46.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHc----CCCeEEeecchhccCCCCcHHH-HHHHHHHHHHCCCcEEEecCC---CCH
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSS----ARPWARICQDTINKGKSGTKVQ-CLTSASSALKKGKSVFLDRCN---LER 90 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~----~~~~~~Is~D~i~~~~~~~~~~-~~~~~~~~L~~Gk~VIID~tn---l~~ 90 (611)
.+..++|+||||+||||+++.++..+ +.....++...+.......... ....+...+.....+|+|... +..
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDE~~~~~~~~ 116 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLKHLMDEGKDTKFLKTVLNSPVLVLDDLGSERLSD 116 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHHHHHHHTCCSHHHHHHHTCSEEEEETCSSSCCCH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHhcCchHHHHHHHhcCCCEEEEeCCCCCcCCH
Confidence 35789999999999999999988764 3233334433321100000000 001234456677789999853 456
Q ss_pred HHHHHHHHh
Q 007244 91 EQRTDFVKL 99 (611)
Q Consensus 91 ~~R~~~~~l 99 (611)
..+..+..+
T Consensus 117 ~~~~~l~~l 125 (180)
T 3ec2_A 117 WQRELISYI 125 (180)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666554
No 193
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=96.90 E-value=0.0019 Score=67.85 Aligned_cols=28 Identities=21% Similarity=0.258 Sum_probs=24.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcCC
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSSAR 46 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~ 46 (611)
++..|++-|+-||||||+++.|++.+..
T Consensus 6 ~~~fI~~EG~dGaGKTT~~~~La~~L~~ 33 (334)
T 1p6x_A 6 TIVRIYLDGVYGIGKSTTGRVMASAASG 33 (334)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 3579999999999999999999988753
No 194
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.89 E-value=0.0014 Score=60.16 Aligned_cols=27 Identities=22% Similarity=0.457 Sum_probs=23.2
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSS 44 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~ 44 (611)
..+..++|+|+||+||||+++.+++.+
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 345568999999999999999998875
No 195
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.88 E-value=0.006 Score=60.96 Aligned_cols=36 Identities=28% Similarity=0.609 Sum_probs=31.1
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEee
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARIC 52 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is 52 (611)
...+.-++|.|+||+|||++|+.+++..+.+++.++
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~ 96 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKIC 96 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEE
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEe
Confidence 456778999999999999999999999887776664
No 196
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.85 E-value=0.0017 Score=65.94 Aligned_cols=40 Identities=23% Similarity=0.399 Sum_probs=31.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCC
Q 007244 23 VIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG 62 (611)
Q Consensus 23 IvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~ 62 (611)
++|.|||||||||+++.++...+..++.++...+...+.+
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~~~ 86 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVG 86 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSSTTH
T ss_pred EEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhhhh
Confidence 9999999999999999999988866666765555443333
No 197
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=96.84 E-value=0.021 Score=55.78 Aligned_cols=133 Identities=10% Similarity=0.034 Sum_probs=72.7
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHHcCC-CeEEee-cchhcc------C----------CCCc--HHH---HHHHHHH
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSAR-PWARIC-QDTINK------G----------KSGT--KVQ---CLTSASS 73 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~~-~~~~Is-~D~i~~------~----------~~~~--~~~---~~~~~~~ 73 (611)
..++.+|+++|.|||||+|+|+.+.+.++. .+..++ .|.++. + .+.+ +.. +...++.
T Consensus 8 ~~~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~iK~~~a~~~gl~~~~~l~~~~ykE~~R~~m~~~g~~~R~ 87 (202)
T 3ch4_B 8 GAPRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEHGLNFQRLLDTSTYKEAFRKDMIRWGEEKRQ 87 (202)
T ss_dssp CCCSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHHHHHHHHTTTCCCC-------CCSSHHHHHHHHHHHHHH
T ss_pred cCCCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHHHHHHHHHcCCCchhhcchhhhHHHHHHHHHHHHHHHHh
Confidence 346679999999999999999999886652 243444 233321 0 0010 001 1111111
Q ss_pred ---------HHH--CCCcEEEecCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHH
Q 007244 74 ---------ALK--KGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVN 142 (611)
Q Consensus 74 ---------~L~--~Gk~VIID~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~ 142 (611)
++. ....||||+ -........+... .+..+.+|.+..+.++..+|...+... . +..+
T Consensus 88 ~d~~~~~~~~~~~~~~~~vII~d-vR~~~Ev~~fr~~--~g~~~~iirI~as~~~R~~Rg~~~~~~----~-Dd~e---- 155 (202)
T 3ch4_B 88 ADPGFFCRKIVEGISQPIWLVSD-TRRVSDIQWFREA--YGAVTQTVRVVALEQSRQQRGWVFTPG----V-DDAE---- 155 (202)
T ss_dssp HCTTTTHHHHSBTCCCSEEEECC-CCSHHHHHHHHHH--HGGGEEEEEEEECHHHHHHTTCCCCTT----T-TTSH----
T ss_pred cCchHHHHHHHHhcCCCcEEEeC-CCCHHHHHHHHHh--CCCcEEEEEEECCHHHHHHHhhhcccc----c-cccc----
Confidence 111 113589988 3444444444333 233477899999999998884322220 0 1111
Q ss_pred HHHhhccCCCccCCccEEEEcCC
Q 007244 143 RMLQKKELPKLSEGFSRITLCQN 165 (611)
Q Consensus 143 rm~~~~e~P~~~EgFd~V~vv~~ 165 (611)
..+..... ..+|.++.++.
T Consensus 156 ---sE~gL~~~-~~~D~vI~Ndg 174 (202)
T 3ch4_B 156 ---SECGLDNF-GDFDWVIENHG 174 (202)
T ss_dssp ---HHHTTTTC-CCCSEEEEECS
T ss_pred ---cccCCCCC-CcCCEEEEeCC
Confidence 12334443 45788888874
No 198
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.83 E-value=0.0026 Score=68.43 Aligned_cols=34 Identities=21% Similarity=0.371 Sum_probs=29.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecch
Q 007244 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDT 55 (611)
Q Consensus 20 p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~ 55 (611)
+.+|+|+||+||||||++..|++.++ ..+|+.|.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~--~~iis~Ds 35 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFN--GEVINSDS 35 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHT--EEEEECCT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCC--CeEeecCc
Confidence 45899999999999999999999988 45677665
No 199
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.78 E-value=0.0015 Score=76.14 Aligned_cols=68 Identities=21% Similarity=0.278 Sum_probs=50.5
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHHHHHHHHHHCC-C-cEEEec
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKG-K-SVFLDR 85 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L~~G-k-~VIID~ 85 (611)
..|.=|+|.||||+|||++|+.++.+++.++..|+...+...+.+..+..+..+.+..+.. . .++||.
T Consensus 236 ~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~gese~~lr~lF~~A~~~~PsIIfIDE 305 (806)
T 3cf2_A 236 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDE 305 (806)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCTTHHHHHHHHHHHHHTTSCSEEEEEES
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcccchHHHHHHHHHHHHHHHcCCeEEEEeh
Confidence 4678899999999999999999999999888888877777777776665554444444333 2 345555
No 200
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.78 E-value=0.00071 Score=69.27 Aligned_cols=37 Identities=19% Similarity=0.306 Sum_probs=30.8
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecc
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQD 54 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D 54 (611)
..+.-|+|.||||+||||+|+.++..++.+++.++..
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~ 83 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGP 83 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHH
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhH
Confidence 4566799999999999999999999988777666543
No 201
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=96.73 E-value=0.0021 Score=71.19 Aligned_cols=63 Identities=3% Similarity=0.060 Sum_probs=44.1
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHcCC-----CeEEeecchhccCCCCcHHHHHHHHHHHHHCCCcEEEecCCC
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSSAR-----PWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNL 88 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~-----~~~~Is~D~i~~~~~~~~~~~~~~~~~~L~~Gk~VIID~tnl 88 (611)
.++.+|+|+|+|||||||+|+.|++.++. .+..++.|. . ..+...+...++.|..||+...+.
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~-~-------~ei~~va~~~~~~G~~Vv~~~~sp 460 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN-K-------TELLSLIQDFIGSGSGLIIPDQWE 460 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT-C-------HHHHTTHHHHHHTTCEEEESSCCC
T ss_pred ccceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC-c-------HHHHHHHHHHHhcCCeEEEecCCH
Confidence 34578999999999999999999999874 235677766 1 112233445567787777765443
No 202
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.69 E-value=0.0014 Score=60.32 Aligned_cols=27 Identities=26% Similarity=0.404 Sum_probs=23.1
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSS 44 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~ 44 (611)
..+..++|+|+||+||||+++.+++.+
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 335567999999999999999999876
No 203
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.63 E-value=0.0038 Score=68.53 Aligned_cols=43 Identities=23% Similarity=0.403 Sum_probs=34.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCC
Q 007244 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG 62 (611)
Q Consensus 20 p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~ 62 (611)
|.-|+|+||||+||||+|+.++...+.++..++...+.....+
T Consensus 49 p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~~g 91 (476)
T 2ce7_A 49 PKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFVG 91 (476)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCCTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHHhc
Confidence 4458899999999999999999999988888876655544443
No 204
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.62 E-value=0.0016 Score=60.14 Aligned_cols=56 Identities=16% Similarity=0.210 Sum_probs=37.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchhccCCCCcHHHHHHHHHHHHHCCCcEEEecCC
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCN 87 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L~~Gk~VIID~tn 87 (611)
....++|+|++|+||||+++.+.... +.....++...+... ..+.....+|+|...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~-------------~~~~~~~lLilDE~~ 93 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT-------------DAAFEAEYLAVDQVE 93 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC-------------GGGGGCSEEEEESTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH-------------HHHhCCCEEEEeCcc
Confidence 45678899999999999999998765 333444554433322 123445667888844
No 205
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.59 E-value=0.0037 Score=61.73 Aligned_cols=35 Identities=26% Similarity=0.513 Sum_probs=29.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhc
Q 007244 23 VIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN 57 (611)
Q Consensus 23 IvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~ 57 (611)
++|.||||+||||+++.++...+..++.++...+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~ 86 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEARVPFITASGSDFV 86 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHH
Confidence 89999999999999999999887677667654443
No 206
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.58 E-value=0.0015 Score=66.88 Aligned_cols=91 Identities=10% Similarity=0.126 Sum_probs=54.0
Q ss_pred cCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHHHHHHHHHH------CCCcEEEecCCCC
Q 007244 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALK------KGKSVFLDRCNLE 89 (611)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L~------~Gk~VIID~tnl~ 89 (611)
....|.++++.|+||+||||+++.+++.++..+..++.... . ...+...+..... ..+.+|||....-
T Consensus 44 ~~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~-----~-~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l 117 (324)
T 3u61_B 44 KGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDC-----K-IDFVRGPLTNFASAASFDGRQKVIVIDEFDRS 117 (324)
T ss_dssp TTCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTC-----C-HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCG
T ss_pred cCCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEccccc-----C-HHHHHHHHHHHHhhcccCCCCeEEEEECCccc
Confidence 34567789999999999999999999998855655554221 1 2222233333333 2345888986543
Q ss_pred --HHHHHHHHHh-CCCCCeEEEEEEe
Q 007244 90 --REQRTDFVKL-GGPEVDVHAVVLD 112 (611)
Q Consensus 90 --~~~R~~~~~l-~~~~~~v~vV~Ld 112 (611)
......++.+ ......+.+|+..
T Consensus 118 ~~~~~~~~L~~~le~~~~~~~iI~~~ 143 (324)
T 3u61_B 118 GLAESQRHLRSFMEAYSSNCSIIITA 143 (324)
T ss_dssp GGHHHHHHHHHHHHHHGGGCEEEEEE
T ss_pred CcHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 4444455554 3322233344443
No 207
>2fg1_A Conserved hypothetical protein BT1257; structural genomics, PSI, PROT structure initiative; HET: MSE; 1.25A {Bacteroides thetaiotaomicron} SCOP: c.50.1.2 PDB: 2afc_A
Probab=96.56 E-value=0.00039 Score=65.17 Aligned_cols=36 Identities=11% Similarity=0.062 Sum_probs=30.5
Q ss_pred cccCCCCCCCccccccCccCCCCCChHHHHHHHHHHH
Q 007244 268 NQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKV 304 (611)
Q Consensus 268 ~~~~~~~~~~SiAfPaIStGi~gfP~~~aa~Iiv~tv 304 (611)
+..+.+++. |||||.||||+||||.+++++||.++.
T Consensus 111 ~~~a~~~~~-sIa~P~Ig~G~~G~~w~~v~~ii~~~l 146 (158)
T 2fg1_A 111 ALFTIAHKA-SVHMPRIGCGLAGGKWELMEQIIKEEL 146 (158)
T ss_dssp HHHHHHHTC-EEEECCTTCSTTCCCHHHHHHHHHHHT
T ss_pred HHHHHHhCC-eEEecCcCCCCCCCCHHHHHHHHHHHh
Confidence 345666676 999999999999999999999887655
No 208
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.56 E-value=0.0027 Score=67.21 Aligned_cols=68 Identities=16% Similarity=0.309 Sum_probs=43.1
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHHHHHHHHH-HCC-CcEEEecC
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSAL-KKG-KSVFLDRC 86 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L-~~G-k~VIID~t 86 (611)
.+.-|+|.|+||+|||++|+.++..++.+++.++...+...+.+........+.... ..+ ..++||..
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEi 216 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQV 216 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC-------CHHHHHHHHHHHHHSSSEEEEEETG
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhccccchHHHHHHHHHHHHHhcCCeEEEEECc
Confidence 356789999999999999999999999888778776665544443333333333322 223 35788874
No 209
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.52 E-value=0.0039 Score=68.67 Aligned_cols=68 Identities=21% Similarity=0.279 Sum_probs=47.1
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHHHHHHHHHHCCC--cEEEec
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGK--SVFLDR 85 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L~~Gk--~VIID~ 85 (611)
..+.-|+|.|+||+|||++|+.++...+.+++.++...+.....+........+......+. .++||.
T Consensus 236 ~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~~g~~~~~~~~~f~~A~~~~p~iLfLDE 305 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDE 305 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSCTTHHHHHHHHHHHHHHHTCSEEEEEES
T ss_pred CCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhhcchhHHHHHHHHHHHHhcCCcEEEecc
Confidence 44566899999999999999999999988888888766665555554433333333333332 466666
No 210
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.51 E-value=0.012 Score=63.95 Aligned_cols=40 Identities=33% Similarity=0.463 Sum_probs=31.5
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchhc
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTIN 57 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D~i~ 57 (611)
.+|.+|+|+|++||||||++.+|+..+ +.....++.|.++
T Consensus 98 ~~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R 140 (443)
T 3dm5_A 98 EKPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWR 140 (443)
T ss_dssp SSSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSS
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcc
Confidence 468999999999999999999987644 3445667777653
No 211
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=96.49 E-value=0.004 Score=64.44 Aligned_cols=104 Identities=11% Similarity=0.141 Sum_probs=70.3
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHcCCC-eEEeec-----chhccCCCCcHHHHHHHHHHHH-HCCCcEEEecCCCCH
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARP-WARICQ-----DTINKGKSGTKVQCLTSASSAL-KKGKSVFLDRCNLER 90 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~-~~~Is~-----D~i~~~~~~~~~~~~~~~~~~L-~~Gk~VIID~tnl~~ 90 (611)
+.+.+|+|=|.-||||||.+++|.+.++.. +.++.. ..++ .++ +......| ..|..||.|...+..
T Consensus 84 ~~~vlIvfEG~DgAGKgt~Ik~L~e~Ldprg~~V~~~~~Pt~eE~~-~~y------l~R~~~~LP~~G~IvIfDRswYs~ 156 (304)
T 3czq_A 84 GKRVMAVFEGRDAAGKGGAIHATTANMNPRSARVVALTKPTETERG-QWY------FQRYVATFPTAGEFVLFDRSWYNR 156 (304)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTSCTTTEEEEECCSCCHHHHT-SCT------THHHHTTCCCTTCEEEEEECGGGG
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHhcccCCeEEEeCCcChHHHh-chH------HHHHHHhcccCCeEEEEECCcchH
Confidence 568999999999999999999999988754 322221 1111 111 12334456 789999999965544
Q ss_pred H--HH-----------HHHHHh-------CCCCCeEEEEEEeCCHHHHHHHHHhcccc
Q 007244 91 E--QR-----------TDFVKL-------GGPEVDVHAVVLDLPAKLCISRSVKRIEH 128 (611)
Q Consensus 91 ~--~R-----------~~~~~l-------~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~ 128 (611)
- +| ..+..+ ...|..+..|||++|.++.++|+..|...
T Consensus 157 v~~~rv~g~~~~~e~~~~~~~In~FE~~L~~~G~~~lKf~L~Is~eeq~kR~~~R~~d 214 (304)
T 3czq_A 157 AGVEPVMGFCTPDQYEQFLKEAPRFEEMIANEGIHLFKFWINIGREMQLKRFHDRRHD 214 (304)
T ss_dssp TTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEECCHHHHHHHHHHHHHC
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCCeeEEEEEECCHHHHHHHHHHhhcC
Confidence 2 11 112121 22567888999999999999999888653
No 212
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.48 E-value=0.0026 Score=59.89 Aligned_cols=98 Identities=13% Similarity=0.134 Sum_probs=50.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcC-----CCeEEeecchhccCCCCcHHHHHHHHHHHHH-------CCCcEEEecCC-CC
Q 007244 23 VIMVGAPGSGKSTFCEHVMRSSA-----RPWARICQDTINKGKSGTKVQCLTSASSALK-------KGKSVFLDRCN-LE 89 (611)
Q Consensus 23 IvLvG~PGSGKST~A~~L~~~~~-----~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L~-------~Gk~VIID~tn-l~ 89 (611)
++|.|+||+||||+++.+++.+. ..+..++... ..........+...+. .+..+|||... +.
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~ 115 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASD-----ERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALT 115 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTC-----TTCHHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSC
T ss_pred EEEECCCCCCHHHHHHHHHHHHhccccccceEEecccc-----ccChHHHHHHHHHHhcccCCCccCceEEEEeChhhcC
Confidence 89999999999999999988642 2233333211 1122222233333332 22347888854 34
Q ss_pred HHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhc
Q 007244 90 REQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKR 125 (611)
Q Consensus 90 ~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R 125 (611)
......+..+ ......+.+|+.--..+.+..++..|
T Consensus 116 ~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r 152 (226)
T 2chg_A 116 ADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSR 152 (226)
T ss_dssp HHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTT
T ss_pred HHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHh
Confidence 4445555555 33333334444433333333444444
No 213
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.46 E-value=0.0028 Score=68.87 Aligned_cols=48 Identities=15% Similarity=0.324 Sum_probs=38.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcC--CCeEEeecchhccCCCCcHHH
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSSA--RPWARICQDTINKGKSGTKVQ 66 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~~--~~~~~Is~D~i~~~~~~~~~~ 66 (611)
.+.-++|.||||+|||++|+.+++.++ .++..++.-.+...+.+....
T Consensus 62 ~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~~~~~~~~ 111 (456)
T 2c9o_A 62 AGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEV 111 (456)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCSSSCHHHH
T ss_pred CCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHHhhhhhHH
Confidence 345689999999999999999999998 678788877777666665544
No 214
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.46 E-value=0.0019 Score=70.12 Aligned_cols=42 Identities=19% Similarity=0.317 Sum_probs=30.7
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHc-CCCeEEeecchhccC
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSS-ARPWARICQDTINKG 59 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~-~~~~~~Is~D~i~~~ 59 (611)
..+.-|+|.||||+|||++|+.++..+ +.++..++...+...
T Consensus 165 ~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~ 207 (444)
T 2zan_A 165 TPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSK 207 (444)
T ss_dssp CCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC-----
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhh
Confidence 345678999999999999999999998 666767776555433
No 215
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.43 E-value=0.0021 Score=65.99 Aligned_cols=41 Identities=17% Similarity=0.185 Sum_probs=32.0
Q ss_pred cCCCcEEEEEEcCCCCcHHHHHHHHHHHcCC-----CeEEe-ecchh
Q 007244 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSAR-----PWARI-CQDTI 56 (611)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~-----~~~~I-s~D~i 56 (611)
....|.+|.|+|++||||||+++.|...++. ....+ ++|.+
T Consensus 27 ~~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f 73 (290)
T 1odf_A 27 GNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDF 73 (290)
T ss_dssp TCCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGG
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccc
Confidence 3567899999999999999999998876642 23344 88776
No 216
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.42 E-value=0.0025 Score=61.28 Aligned_cols=38 Identities=13% Similarity=0.058 Sum_probs=28.4
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEeecchh
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTI 56 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~~---~~~~~Is~D~i 56 (611)
.+..++|.|+||+||||+++.+++.+. ..+..++...+
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~ 91 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIH 91 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 456789999999999999999987654 34455554443
No 217
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.36 E-value=0.0066 Score=61.01 Aligned_cols=35 Identities=26% Similarity=0.513 Sum_probs=29.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhc
Q 007244 23 VIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN 57 (611)
Q Consensus 23 IvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~ 57 (611)
++|+|+||+||||+++.++...+..++.++...+.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~ 110 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEARVPFITASGSDFV 110 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHH
Confidence 89999999999999999999887667667654443
No 218
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.33 E-value=0.0044 Score=63.75 Aligned_cols=75 Identities=16% Similarity=0.213 Sum_probs=48.1
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHHHHHHHHHHCCCcEEEecCC-CCHHHHHHHH
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCN-LEREQRTDFV 97 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L~~Gk~VIID~tn-l~~~~R~~~~ 97 (611)
.+.-|+|.|+||+|||++|+.+++..+.++..++...+. .. .....+...+..+..++||... +.......++
T Consensus 54 ~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll 127 (338)
T 3pfi_A 54 CLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIE-----KS-GDLAAILTNLSEGDILFIDEIHRLSPAIEEVLY 127 (338)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCC-----SH-HHHHHHHHTCCTTCEEEEETGGGCCHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhcc-----ch-hHHHHHHHhccCCCEEEEechhhcCHHHHHHHH
Confidence 344589999999999999999999998887777654432 11 1112222234456678888855 3344444444
Q ss_pred Hh
Q 007244 98 KL 99 (611)
Q Consensus 98 ~l 99 (611)
..
T Consensus 128 ~~ 129 (338)
T 3pfi_A 128 PA 129 (338)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 219
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.33 E-value=0.0037 Score=65.36 Aligned_cols=68 Identities=15% Similarity=0.183 Sum_probs=40.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCC--CeEEeecchhccCCCCcHHHHHHHHHHHHHCCCcEEEecCC
Q 007244 20 QILVIMVGAPGSGKSTFCEHVMRSSAR--PWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCN 87 (611)
Q Consensus 20 p~LIvLvG~PGSGKST~A~~L~~~~~~--~~~~Is~D~i~~~~~~~~~~~~~~~~~~L~~Gk~VIID~tn 87 (611)
..+++|.|+||+||||||.+++...+. .|+.+..+...+......+.....+.+.+.....+|||...
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~LLVIDsI~ 192 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHRVIVIDSLK 192 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCSEEEEECCT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCCEEEEeccc
Confidence 457899999999999999999875332 35443111110111122344455555666555588999843
No 220
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.32 E-value=0.0032 Score=73.32 Aligned_cols=61 Identities=13% Similarity=0.157 Sum_probs=47.6
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHHHHHHHHHHCC
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKG 78 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L~~G 78 (611)
..|.-|+|.||||+|||.+|+.++.+.+.+++.++...+...+.+..+..+..+.+..+..
T Consensus 509 ~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~~Ar~~ 569 (806)
T 3cf2_A 509 TPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQA 569 (806)
T ss_dssp CCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHHHHHHTT
T ss_pred CCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccchHHHHHHHHHHHHHHc
Confidence 3456689999999999999999999999888888887887788877666555555444443
No 221
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=96.30 E-value=0.034 Score=59.16 Aligned_cols=29 Identities=21% Similarity=0.221 Sum_probs=23.0
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~ 45 (611)
......|+|-|+-||||||+++.|.+.+.
T Consensus 46 ~~~~~fIt~EG~dGsGKTT~~~~Lae~L~ 74 (376)
T 1of1_A 46 MPTLLRVYIDGPHGMGKTTTTQLLVALGS 74 (376)
T ss_dssp CCEEEEEEECSSTTSSHHHHHHHHHC---
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHhh
Confidence 34567899999999999999999988764
No 222
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.28 E-value=0.003 Score=64.84 Aligned_cols=68 Identities=12% Similarity=0.111 Sum_probs=41.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchhccCCCCcHH-HHHHHHHHHHHCCCcEEEecC
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGKSGTKV-QCLTSASSALKKGKSVFLDRC 86 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D~i~~~~~~~~~-~~~~~~~~~L~~Gk~VIID~t 86 (611)
.+.-++|.|+||+||||+++.++..+ +..+..++...+......... .........+.....++||..
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~iDEi 107 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNMYKSVDLLLLDDV 107 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHHTCHHHHHHHHHTCSEEEEECG
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHcCcHHHHHHHhcCCCEEEEcCc
Confidence 34568999999999999999999876 556666765444211000000 001222334455677888884
No 223
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.23 E-value=0.023 Score=51.39 Aligned_cols=89 Identities=20% Similarity=0.196 Sum_probs=50.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchhccCCCCcHHHHHHHHHHHHHCCCcEEEecCC-CCHHHHHHHH
Q 007244 22 LVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCN-LEREQRTDFV 97 (611)
Q Consensus 22 LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L~~Gk~VIID~tn-l~~~~R~~~~ 97 (611)
-|+|.|+||+|||++|+.+.... +.+++ ++-..+... ..... .+. ...+..++||... +.......++
T Consensus 26 ~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~--~~~~~---~~~--~a~~g~l~ldei~~l~~~~q~~Ll 97 (145)
T 3n70_A 26 AVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA--PQLND---FIA--LAQGGTLVLSHPEHLTREQQYHLV 97 (145)
T ss_dssp CEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS--SCHHH---HHH--HHTTSCEEEECGGGSCHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc--hhhhc---HHH--HcCCcEEEEcChHHCCHHHHHHHH
Confidence 47899999999999999998865 34566 654433322 11111 111 1356678888854 4444445555
Q ss_pred Hh-CCCCCeE-EEEEEeCCHHHH
Q 007244 98 KL-GGPEVDV-HAVVLDLPAKLC 118 (611)
Q Consensus 98 ~l-~~~~~~v-~vV~Ld~p~e~~ 118 (611)
.+ ......+ .+.-...+.+.+
T Consensus 98 ~~l~~~~~~~~~I~~t~~~~~~~ 120 (145)
T 3n70_A 98 QLQSQEHRPFRLIGIGDTSLVEL 120 (145)
T ss_dssp HHHHSSSCSSCEEEEESSCHHHH
T ss_pred HHHhhcCCCEEEEEECCcCHHHH
Confidence 55 3333222 233345555543
No 224
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.23 E-value=0.014 Score=63.43 Aligned_cols=39 Identities=21% Similarity=0.282 Sum_probs=30.4
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchh
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTI 56 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D~i 56 (611)
.+|.+|+|+|++||||||++.+|+..+ +.....++.|.+
T Consensus 95 ~~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~ 136 (433)
T 3kl4_A 95 KLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVY 136 (433)
T ss_dssp SSSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCcc
Confidence 468999999999999999999987543 444556676655
No 225
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.17 E-value=0.0069 Score=63.57 Aligned_cols=37 Identities=19% Similarity=0.375 Sum_probs=31.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh
Q 007244 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (611)
Q Consensus 20 p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i 56 (611)
+.-++|.|+||+||||+|+.+++.++.++..++...+
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~ 108 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSL 108 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGC
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEecchhh
Confidence 4568999999999999999999999888877765444
No 226
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.17 E-value=0.0096 Score=61.85 Aligned_cols=28 Identities=14% Similarity=0.293 Sum_probs=24.3
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRSS 44 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~ 44 (611)
...+..++|.|+||+||||+++.+++.+
T Consensus 42 ~~~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 42 NEVKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp TCCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 3456789999999999999999998875
No 227
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.13 E-value=0.0058 Score=63.02 Aligned_cols=27 Identities=26% Similarity=0.454 Sum_probs=22.8
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRSS 44 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~ 44 (611)
...|. ++|+||||+||||+++.++..+
T Consensus 34 ~~~~~-~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 34 RDLPH-LLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp TCCCC-EEEECSTTSSHHHHHHTHHHHH
T ss_pred CCCCe-EEEECCCCCCHHHHHHHHHHHH
Confidence 34456 8999999999999999998853
No 228
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=96.13 E-value=0.0044 Score=63.08 Aligned_cols=76 Identities=16% Similarity=0.268 Sum_probs=47.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHHHHHHHHHHCCCcEEEecCCC-CHHHHHHHH
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNL-EREQRTDFV 97 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L~~Gk~VIID~tnl-~~~~R~~~~ 97 (611)
.+..++|.|+||+||||+|+.+.+.++.++..++...+. ....+...+...+..+..++||.... .......++
T Consensus 37 ~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~-----~~~~l~~~l~~~~~~~~~l~lDEi~~l~~~~~~~L~ 111 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIE-----KPGDLAAILANSLEEGDILFIDEIHRLSRQAEEHLY 111 (324)
T ss_dssp CCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCC-----SHHHHHHHHTTTCCTTCEEEETTTTSCCHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccC-----ChHHHHHHHHHhccCCCEEEEECCcccccchHHHHH
Confidence 345688999999999999999999888777666543331 12222222222244566788998553 333333444
Q ss_pred Hh
Q 007244 98 KL 99 (611)
Q Consensus 98 ~l 99 (611)
.+
T Consensus 112 ~~ 113 (324)
T 1hqc_A 112 PA 113 (324)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 229
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.13 E-value=0.0059 Score=57.93 Aligned_cols=28 Identities=14% Similarity=0.274 Sum_probs=23.9
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~ 45 (611)
..+..++|.|+||+||||+++.+++.+.
T Consensus 43 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 43 RIHHAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp CCCSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3456899999999999999999988764
No 230
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.08 E-value=0.0046 Score=62.19 Aligned_cols=40 Identities=15% Similarity=0.435 Sum_probs=33.1
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhcc
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK 58 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~ 58 (611)
.+.-++|.|+||+|||++|+.+++.++.++..++...+..
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~ 88 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTE 88 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhccc
Confidence 4556889999999999999999999988887787655543
No 231
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.05 E-value=0.0033 Score=59.72 Aligned_cols=121 Identities=13% Similarity=0.060 Sum_probs=60.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchhcc----CC-CCcHHHHHHHHHHHHHCCCcEEEecCCCCH--
Q 007244 21 ILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINK----GK-SGTKVQCLTSASSALKKGKSVFLDRCNLER-- 90 (611)
Q Consensus 21 ~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D~i~~----~~-~~~~~~~~~~~~~~L~~Gk~VIID~tnl~~-- 90 (611)
..++|.|+||+||||+++.+.... +..+..++...+.. .. .... ..+...+.....+|||......
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~lilDei~~~~~~ 130 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKHSLQDQTM----NEKLDYIKKVPVLMLDDLGAEAMS 130 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHC---CCC----HHHHHHHHHSSEEEEEEECCC---
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHHHHHhccchH----HHHHHHhcCCCEEEEcCCCCCcCC
Confidence 678999999999999999998765 33444455333211 00 0001 1223344455678999853322
Q ss_pred -HHHHH----HHHhC-CCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhc
Q 007244 91 -EQRTD----FVKLG-GPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKK 148 (611)
Q Consensus 91 -~~R~~----~~~l~-~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~ 148 (611)
..... ++..+ ..+. ..++.-..+.+.+...+...... ..+....+.++.|+....
T Consensus 131 ~~~~~~ll~~~l~~~~~~~~-~~i~tsn~~~~~l~~~~~~~~~~--~~~~~~~~~~~~Rl~~~~ 191 (202)
T 2w58_A 131 SWVRDDVFGPILQYRMFENL-PTFFTSNFDMQQLAHHLTYSQRG--EEEKVKAARIMERIRYLA 191 (202)
T ss_dssp CCGGGTTHHHHHHHHHHTTC-CEEEEESSCHHHHHHHSCCCC-------CCHHHHHHHHHHHHE
T ss_pred HHHHHHHHHHHHHHHHhCCC-CEEEEcCCCHHHHHHHHhhhccC--cchhHHHHHHHHHHHHhc
Confidence 11111 11111 1122 24555677788777664211000 000123466677776643
No 232
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.04 E-value=0.0079 Score=65.48 Aligned_cols=44 Identities=18% Similarity=0.472 Sum_probs=34.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhcc-CCCC
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK-GKSG 62 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~-~~~~ 62 (611)
.+.-|+|.||||+||||+|+.+++.++.++..++...+.. ++.+
T Consensus 49 ~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG 93 (444)
T 1g41_A 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVG 93 (444)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CC
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceee
Confidence 3456999999999999999999999998888887655544 4544
No 233
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.99 E-value=0.0048 Score=64.56 Aligned_cols=38 Identities=24% Similarity=0.435 Sum_probs=31.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i 56 (611)
.+.-|+|.||||+|||++|+.+++.++.+++.++.-.+
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l 87 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTL 87 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHh
Confidence 45568999999999999999999999988877765443
No 234
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.98 E-value=0.01 Score=61.25 Aligned_cols=28 Identities=25% Similarity=0.366 Sum_probs=24.4
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRSS 44 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~ 44 (611)
...+..++|.||||+||||+++.+++.+
T Consensus 41 ~~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 41 GEKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp SCCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 3556789999999999999999998876
No 235
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=95.93 E-value=0.059 Score=56.39 Aligned_cols=27 Identities=22% Similarity=0.316 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSSA 45 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~~ 45 (611)
....|++-|+-||||||+++.|.+.+.
T Consensus 3 ~~~fI~~EG~dGsGKTT~~~~La~~L~ 29 (331)
T 1e2k_A 3 TLLRVYIDGPHGMGKTTTTQLLVALGS 29 (331)
T ss_dssp EEEEEEECSCTTSSHHHHHHHHTC---
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 356899999999999999999987654
No 236
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.93 E-value=0.046 Score=56.51 Aligned_cols=33 Identities=24% Similarity=0.536 Sum_probs=27.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCC--CeEEee
Q 007244 20 QILVIMVGAPGSGKSTFCEHVMRSSAR--PWARIC 52 (611)
Q Consensus 20 p~LIvLvG~PGSGKST~A~~L~~~~~~--~~~~Is 52 (611)
+..++|.||||+|||++|+.+++.++. ++..++
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~ 104 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIA 104 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhcccCCccccc
Confidence 468999999999999999999998873 454444
No 237
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.92 E-value=0.00091 Score=66.55 Aligned_cols=36 Identities=25% Similarity=0.490 Sum_probs=28.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh
Q 007244 21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (611)
Q Consensus 21 ~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i 56 (611)
.-++|.|+||+||||+|+.++...+.+++.++...+
T Consensus 45 ~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~ 80 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSF 80 (268)
T ss_dssp SCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTT
T ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHH
Confidence 348899999999999999999998876655654443
No 238
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.91 E-value=0.0054 Score=58.83 Aligned_cols=33 Identities=24% Similarity=0.389 Sum_probs=26.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecch
Q 007244 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDT 55 (611)
Q Consensus 22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~ 55 (611)
+++++|++||||||||++++.. +.+..++....
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred CEEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 4789999999999999999977 65655666533
No 239
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.88 E-value=0.0077 Score=70.25 Aligned_cols=69 Identities=22% Similarity=0.274 Sum_probs=46.6
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHHHHH-HHHHHC-CCcEEEecC
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSA-SSALKK-GKSVFLDRC 86 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~~~~-~~~L~~-Gk~VIID~t 86 (611)
..+.-|+|+|+|||||||+|+.++..++..++.++...+.....+........+ ..+... ...+++|..
T Consensus 236 ~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEi 306 (806)
T 1ypw_A 236 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDEL 306 (806)
T ss_dssp CCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSSSTTHHHHHHHHHHHHHHHHCSEEEEEESG
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhhhhhhHHHHHHHHHHHHHhcCCcEEEeccH
Confidence 456679999999999999999999998877777776666555555444333222 222222 235677773
No 240
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.84 E-value=0.017 Score=59.42 Aligned_cols=36 Identities=19% Similarity=0.241 Sum_probs=28.4
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHHc------CCCeEEee
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRSS------ARPWARIC 52 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~------~~~~~~Is 52 (611)
...+..++|.|+||+||||+++.+++.. +..++.++
T Consensus 42 ~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~ 83 (386)
T 2qby_A 42 EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN 83 (386)
T ss_dssp TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEE
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 3556789999999999999999998876 54455555
No 241
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.84 E-value=0.0063 Score=62.99 Aligned_cols=103 Identities=12% Similarity=0.081 Sum_probs=54.0
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHcCCC-----eEEeecchhccCCCCcHHHHHHHHHHHHHC-------CCcEEEec
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARP-----WARICQDTINKGKSGTKVQCLTSASSALKK-------GKSVFLDR 85 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~-----~~~Is~D~i~~~~~~~~~~~~~~~~~~L~~-------Gk~VIID~ 85 (611)
..|. ++|.||||+||||+++.+++.+... +..++... .. ....+...+...... .+.+|||.
T Consensus 45 ~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~----~~-~~~~ir~~i~~~~~~~~~~~~~~~viiiDe 118 (340)
T 1sxj_C 45 KLPH-LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASD----DR-GIDVVRNQIKDFASTRQIFSKGFKLIILDE 118 (340)
T ss_dssp CCCC-EEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTS----CC-SHHHHHTHHHHHHHBCCSSSCSCEEEEETT
T ss_pred CCce-EEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcc----cc-cHHHHHHHHHHHHhhcccCCCCceEEEEeC
Confidence 3344 8999999999999999999875321 11222111 11 122232333333321 23467886
Q ss_pred C-CCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcc
Q 007244 86 C-NLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRI 126 (611)
Q Consensus 86 t-nl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~ 126 (611)
. .++......++++ ........++++.-....+...+..|-
T Consensus 119 ~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~ 161 (340)
T 1sxj_C 119 ADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQC 161 (340)
T ss_dssp GGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTS
T ss_pred CCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhc
Confidence 4 3455555556665 444333445555444444445555554
No 242
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=95.83 E-value=0.013 Score=58.87 Aligned_cols=103 Identities=13% Similarity=0.096 Sum_probs=54.8
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHcC-----CCeEEeecchhccCCCCcHHHHHHHHHHHH-------HCCCcEEEec
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSSA-----RPWARICQDTINKGKSGTKVQCLTSASSAL-------KKGKSVFLDR 85 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~-----~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L-------~~Gk~VIID~ 85 (611)
..+. ++|.|+||+||||+++.+++.+. ..+..++........ ... ..+.... ...+.+|||.
T Consensus 37 ~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~vliiDe 110 (319)
T 2chq_A 37 NIPH-LLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGID-VVR----HKIKEFARTAPIGGAPFKIIFLDE 110 (319)
T ss_dssp CCCC-EEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTT-TSS----HHHHHHHHSCCSSSCCCEEEEEET
T ss_pred CCCe-EEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccChH-HHH----HHHHHHHhcCCCCCCCceEEEEeC
Confidence 3344 89999999999999999988751 123344432221111 011 1112221 1234588888
Q ss_pred CC-CCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcc
Q 007244 86 CN-LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRI 126 (611)
Q Consensus 86 tn-l~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~ 126 (611)
.. +.......++++ ......+.+|+.....+.+...+..|-
T Consensus 111 ~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~ 153 (319)
T 2chq_A 111 ADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRC 153 (319)
T ss_dssp GGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTC
T ss_pred CCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhC
Confidence 54 444555556666 554444555555444444444455553
No 243
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.83 E-value=0.029 Score=57.62 Aligned_cols=39 Identities=26% Similarity=0.359 Sum_probs=30.3
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHc----CCCeEEeecchh
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSS----ARPWARICQDTI 56 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~----~~~~~~Is~D~i 56 (611)
.++.+|+|+|++||||||++..|+..+ |.....++.|..
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~ 145 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTY 145 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcc
Confidence 457899999999999999999987543 334556777764
No 244
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.82 E-value=0.027 Score=58.31 Aligned_cols=24 Identities=21% Similarity=0.404 Sum_probs=22.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcC
Q 007244 22 LVIMVGAPGSGKSTFCEHVMRSSA 45 (611)
Q Consensus 22 LIvLvG~PGSGKST~A~~L~~~~~ 45 (611)
.++|+|+||+||||+++.++....
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~ 69 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYK 69 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHh
Confidence 899999999999999999998773
No 245
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.82 E-value=0.039 Score=60.99 Aligned_cols=40 Identities=35% Similarity=0.516 Sum_probs=29.9
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchhc
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTIN 57 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D~i~ 57 (611)
.++.+|+|+|+||+||||++.+|+..+ +.....++.|.++
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r 141 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFR 141 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccc
Confidence 567899999999999999999998654 4445667776543
No 246
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.78 E-value=0.0052 Score=66.55 Aligned_cols=67 Identities=12% Similarity=0.102 Sum_probs=40.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHc-----CCCeEEeecchhccCCCCcHH-HHHHHHHHHHH-CCCcEEEecC
Q 007244 20 QILVIMVGAPGSGKSTFCEHVMRSS-----ARPWARICQDTINKGKSGTKV-QCLTSASSALK-KGKSVFLDRC 86 (611)
Q Consensus 20 p~LIvLvG~PGSGKST~A~~L~~~~-----~~~~~~Is~D~i~~~~~~~~~-~~~~~~~~~L~-~Gk~VIID~t 86 (611)
+.-++|.|+||+||||+++.++... +..+..++...+......... .........+. ....++||..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi 203 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDV 203 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECG
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCc
Confidence 5568999999999999999998865 445556665443211000000 00122334445 5667899984
No 247
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.76 E-value=0.011 Score=65.37 Aligned_cols=39 Identities=23% Similarity=0.376 Sum_probs=32.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCC
Q 007244 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGK 60 (611)
Q Consensus 22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~ 60 (611)
-++|+||||+||||+++.++...+.+++.++...+....
T Consensus 66 GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~ 104 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 104 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSC
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhh
Confidence 389999999999999999999988778778765554433
No 248
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=95.74 E-value=0.0043 Score=67.51 Aligned_cols=76 Identities=22% Similarity=0.315 Sum_probs=43.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHHHHHHHHHH--CCCcEEEecCCCCH-HHHHHHH
Q 007244 21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALK--KGKSVFLDRCNLER-EQRTDFV 97 (611)
Q Consensus 21 ~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L~--~Gk~VIID~tnl~~-~~R~~~~ 97 (611)
.-++|.||||+||||+|+.+++.++..+..++..... .......+..+..... .+..++||....-. .....++
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~~---~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL 127 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYANADVERISAVTSG---VKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFL 127 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTCC---HHHHHHHHHHHHHHHHTTCCEEEEEETTTCC------CCH
T ss_pred cEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccCC---HHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHHHHHHHH
Confidence 4689999999999999999999988777666542211 0011122333333332 34568889865433 3444455
Q ss_pred Hh
Q 007244 98 KL 99 (611)
Q Consensus 98 ~l 99 (611)
..
T Consensus 128 ~~ 129 (447)
T 3pvs_A 128 PH 129 (447)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 249
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.68 E-value=0.0077 Score=57.42 Aligned_cols=36 Identities=22% Similarity=0.156 Sum_probs=27.5
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeec
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ 53 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~ 53 (611)
++..+++|+|+||||||||+..++...+.....++.
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~ 53 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDT 53 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEES
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEEC
Confidence 456799999999999999999998743433444544
No 250
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=95.64 E-value=0.008 Score=62.37 Aligned_cols=34 Identities=21% Similarity=0.271 Sum_probs=27.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEee
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARIC 52 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is 52 (611)
.+..++|+||||+||||+++.++..++..+...+
T Consensus 50 ~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~s 83 (334)
T 1in4_A 50 VLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTS 83 (334)
T ss_dssp CCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEE
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEe
Confidence 3467899999999999999999999875544343
No 251
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.60 E-value=0.026 Score=62.17 Aligned_cols=28 Identities=29% Similarity=0.431 Sum_probs=24.4
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRSS 44 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~ 44 (611)
..++.+|+|+|++||||||+++.|+..+
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 4568899999999999999999987643
No 252
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.60 E-value=0.0055 Score=55.53 Aligned_cols=69 Identities=14% Similarity=0.217 Sum_probs=40.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHHHHHHHHHHCCCcEEEecCC-CCHHHHHHHHHh
Q 007244 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCN-LEREQRTDFVKL 99 (611)
Q Consensus 22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L~~Gk~VIID~tn-l~~~~R~~~~~l 99 (611)
-|+|.|+||+|||++|+.+..... +++.++...+.... .....+ ...+..+++|... +.......++++
T Consensus 29 ~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~-------~~~~~~-~a~~~~l~lDei~~l~~~~q~~Ll~~ 98 (143)
T 3co5_A 29 PVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM-------PMELLQ-KAEGGVLYVGDIAQYSRNIQTGITFI 98 (143)
T ss_dssp CEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC-------HHHHHH-HTTTSEEEEEECTTCCHHHHHHHHHH
T ss_pred cEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh-------hhhHHH-hCCCCeEEEeChHHCCHHHHHHHHHH
Confidence 378899999999999999987665 56555533322111 111111 2345678888755 334444444444
No 253
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.58 E-value=0.0068 Score=61.18 Aligned_cols=103 Identities=12% Similarity=0.033 Sum_probs=54.1
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHcC-----CCeEEeecchhccCCCCcHHHHHHHHHHHHH------C--CCcEEEe
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSSA-----RPWARICQDTINKGKSGTKVQCLTSASSALK------K--GKSVFLD 84 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~-----~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L~------~--Gk~VIID 84 (611)
..|. ++|.|+||+||||+++.+++.+. ..+..++... ......+...+..... . .+.+|||
T Consensus 41 ~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~~~~~~~~~~viiiD 114 (323)
T 1sxj_B 41 NMPH-MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASD-----DRGIDVVRNQIKHFAQKKLHLPPGKHKIVILD 114 (323)
T ss_dssp CCCC-EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTS-----CCSHHHHHTHHHHHHHBCCCCCTTCCEEEEEE
T ss_pred CCCe-EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCcc-----ccChHHHHHHHHHHHhccccCCCCCceEEEEE
Confidence 3445 89999999999999999988742 1233333211 1112223333333331 2 2457888
Q ss_pred cCC-CCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcc
Q 007244 85 RCN-LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRI 126 (611)
Q Consensus 85 ~tn-l~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~ 126 (611)
... +.......++++ ......+.+|+..-+.+.+...+..|.
T Consensus 115 e~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~ 158 (323)
T 1sxj_B 115 EADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQC 158 (323)
T ss_dssp SGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTS
T ss_pred CcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhc
Confidence 854 344444445555 333333445554444444445555553
No 254
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.54 E-value=0.013 Score=60.69 Aligned_cols=41 Identities=22% Similarity=0.411 Sum_probs=31.6
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchhc
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTIN 57 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D~i~ 57 (611)
..++.+|+|+|++||||||++..++..+ +.....++.|.++
T Consensus 101 ~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r 144 (306)
T 1vma_A 101 PEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFR 144 (306)
T ss_dssp SSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTC
T ss_pred CCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccccc
Confidence 3568899999999999999999987654 3345566777654
No 255
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.52 E-value=0.025 Score=58.39 Aligned_cols=29 Identities=14% Similarity=0.252 Sum_probs=25.0
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~ 45 (611)
...+..++|.|+||+||||+++.+++.+.
T Consensus 35 ~~~~~~~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 35 GRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp TCCCSEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34566899999999999999999998765
No 256
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.49 E-value=0.018 Score=62.44 Aligned_cols=40 Identities=35% Similarity=0.390 Sum_probs=30.9
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchhc
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTIN 57 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D~i~ 57 (611)
..|.+|+|+|+||+||||++.+|+..+ +.....++.|..+
T Consensus 97 ~~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r 139 (432)
T 2v3c_C 97 KKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYR 139 (432)
T ss_dssp SSCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccC
Confidence 457899999999999999999988754 2345667777553
No 257
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.49 E-value=0.0084 Score=58.57 Aligned_cols=35 Identities=23% Similarity=0.369 Sum_probs=28.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i 56 (611)
....|+|+|+|||||||+|..|+++.. ..|+.|..
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g~---~iIsdDs~ 67 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRGH---RLIADDRV 67 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTTC---EEEESSEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhCC---eEEecchh
Confidence 356799999999999999999998754 45665544
No 258
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=95.47 E-value=0.0068 Score=61.28 Aligned_cols=99 Identities=15% Similarity=0.152 Sum_probs=51.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcCC-----CeEEeecchhccCCCCcHHHHHHHHHHHHH-------CCCcEEEecCC-CC
Q 007244 23 VIMVGAPGSGKSTFCEHVMRSSAR-----PWARICQDTINKGKSGTKVQCLTSASSALK-------KGKSVFLDRCN-LE 89 (611)
Q Consensus 23 IvLvG~PGSGKST~A~~L~~~~~~-----~~~~Is~D~i~~~~~~~~~~~~~~~~~~L~-------~Gk~VIID~tn-l~ 89 (611)
++|.|+||+||||+++.+++.+.. .+..++..... ........+..... ....+|||... +.
T Consensus 49 ~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~ 123 (327)
T 1iqp_A 49 LLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDER-----GINVIREKVKEFARTKPIGGASFKIIFLDEADALT 123 (327)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHH-----HHHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSC
T ss_pred EEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccC-----chHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCC
Confidence 899999999999999999887521 13333321110 00111122222221 23458888854 44
Q ss_pred HHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcc
Q 007244 90 REQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRI 126 (611)
Q Consensus 90 ~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~ 126 (611)
......++.+ ......+.+|+..-..+.+...+..|.
T Consensus 124 ~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~ 161 (327)
T 1iqp_A 124 QDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRC 161 (327)
T ss_dssp HHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTE
T ss_pred HHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhC
Confidence 4555556665 443333444444433333444444443
No 259
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.46 E-value=0.0071 Score=58.04 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=23.1
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRS 43 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~ 43 (611)
+...++.|+|++||||||+++.++..
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 45679999999999999999999874
No 260
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.45 E-value=0.11 Score=56.16 Aligned_cols=40 Identities=20% Similarity=0.261 Sum_probs=31.7
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHc----CCCeEEeecchhc
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSS----ARPWARICQDTIN 57 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~----~~~~~~Is~D~i~ 57 (611)
.+|.+|+++|++|+||||++.+|+..+ +.....++.|..+
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r 141 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYR 141 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence 568899999999999999999987543 5556677877654
No 261
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.45 E-value=0.0063 Score=59.18 Aligned_cols=24 Identities=29% Similarity=0.594 Sum_probs=21.7
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHH
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVM 41 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~ 41 (611)
++..++.|+||+||||||+++.++
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHH
Confidence 456799999999999999999887
No 262
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.38 E-value=0.0085 Score=56.84 Aligned_cols=24 Identities=29% Similarity=0.670 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcC
Q 007244 22 LVIMVGAPGSGKSTFCEHVMRSSA 45 (611)
Q Consensus 22 LIvLvG~PGSGKST~A~~L~~~~~ 45 (611)
.+.|+|++||||||+++.++..++
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999988765
No 263
>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}
Probab=95.32 E-value=0.0091 Score=61.21 Aligned_cols=107 Identities=16% Similarity=0.161 Sum_probs=71.8
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeec-----chhccCCCCcHHHHHHHHHHHHHCCCcEEEecCCCCHHH
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ-----DTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNLEREQ 92 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~-----D~i~~~~~~~~~~~~~~~~~~L~~Gk~VIID~tnl~~~~ 92 (611)
..+.||+|-|.-||||++.++++.+.++...+.+-. +.-...++.- ......=..|..+|+|...+...-
T Consensus 73 ~~~vlIvfEG~DaAGKgg~Ik~l~~~ldPRg~~V~a~~~Pt~eE~~~~ylw-----R~~~~lP~~G~I~IFdRSwY~~vl 147 (289)
T 3rhf_A 73 PKRLLLILQAMDTAGKGGIVSHVVGAMDPQGVQLTAFKAPTDEEKSHDFLW-----RIEKQVPAAGMVGVFDRSQYEDVL 147 (289)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECCSCCHHHHTSCTTH-----HHHTTCCCTTCEEEEESCGGGGGT
T ss_pred CCcEEEEEECCCCCChHHHHHHHHHhcCcCceEEEECCCCChhhhcCCHHH-----HHHHhCCCCCeEEEEeCchhhhHh
Confidence 579999999999999999999999998855433321 1111111111 111222256888999996655521
Q ss_pred H-------------HH------HHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccccc
Q 007244 93 R-------------TD------FVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHE 129 (611)
Q Consensus 93 R-------------~~------~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~ 129 (611)
. .. |-+. ...|+.++-++|++|.++..+|+..|...+
T Consensus 148 verV~g~~~~~~~~~~~~~I~~FE~~L~~~G~~ilKf~LhIskeEQ~kR~~~R~~dP 204 (289)
T 3rhf_A 148 IHRVHGWADAAELERRYAAINDFESRLTEQGTTIVKVMLNISKDEQKKRLIARLDDP 204 (289)
T ss_dssp HHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECCHHHHHHHHHHHHHCG
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEECCHHHHHHHHHHHhcCC
Confidence 1 11 1122 467888889999999999999999997754
No 264
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=95.25 E-value=0.061 Score=55.67 Aligned_cols=111 Identities=12% Similarity=0.129 Sum_probs=61.6
Q ss_pred cCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEe---e--------------cchh--cc---CCCCcHHHHHHHHHH
Q 007244 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARI---C--------------QDTI--NK---GKSGTKVQCLTSASS 73 (611)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~I---s--------------~D~i--~~---~~~~~~~~~~~~~~~ 73 (611)
....+..++|.|+||+||||+|+.+++.+......- + .|.+ .. +.....+++ ..+.+
T Consensus 20 ~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~~~i~~i-r~l~~ 98 (334)
T 1a5t_A 20 AGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKNTLGVDAV-REVTE 98 (334)
T ss_dssp TTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTCSSBCHHHH-HHHHH
T ss_pred cCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccccCCCCCHHHH-HHHHH
Confidence 456678899999999999999999998765221000 0 0111 11 111122222 22333
Q ss_pred HHH------CCCcEEEecCC-CCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244 74 ALK------KGKSVFLDRCN-LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (611)
Q Consensus 74 ~L~------~Gk~VIID~tn-l~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~ 127 (611)
.+. ..+.+|||... ++......+++. .+.+..+.+|++-...+.+...+..|-.
T Consensus 99 ~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc~ 160 (334)
T 1a5t_A 99 KLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCR 160 (334)
T ss_dssp HTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred HHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhcce
Confidence 332 12457888743 445555667776 6655556666665554555556666643
No 265
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.24 E-value=0.057 Score=56.61 Aligned_cols=37 Identities=27% Similarity=0.249 Sum_probs=27.6
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHH---cCCCeEEeec
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRS---SARPWARICQ 53 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~---~~~~~~~Is~ 53 (611)
-.+..|++|.|.||+|||||+..++.. .+.+...++.
T Consensus 43 l~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 43 FNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp BCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 345679999999999999999998764 3334445553
No 266
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=95.20 E-value=0.073 Score=56.02 Aligned_cols=127 Identities=14% Similarity=0.069 Sum_probs=65.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcCC--CeEEee-cchhccC-C-----CCc-H-------H--HHHHHHHHHHHCCC
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSSAR--PWARIC-QDTINKG-K-----SGT-K-------V--QCLTSASSALKKGK 79 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~--~~~~Is-~D~i~~~-~-----~~~-~-------~--~~~~~~~~~L~~Gk 79 (611)
...+++|+|++||||||+++.+...+.. ..+.++ .+.+... . +.. . . .....+..++....
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~p 253 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKP 253 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------CCHHHHHHHHTTSCC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccccccccccCHHHHHHHHHhcCC
Confidence 4568999999999999999999876652 233333 1111110 0 000 0 0 12355666666665
Q ss_pred cEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhh
Q 007244 80 SVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQK 147 (611)
Q Consensus 80 ~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~ 147 (611)
.+++.+-.........+..+ ..+...+..+.- .+......|+......... -...+.+.++++...
T Consensus 254 d~~l~~e~r~~~~~~~l~~l~~g~~~~l~t~H~-~~~~~~~~Rl~~l~~~~~~-~~~~~~~~i~~~l~~ 320 (361)
T 2gza_A 254 TRILLAELRGGEAYDFINVAASGHGGSITSCHA-GSCELTFERLALMVLQNRQ-GRQLPYEIIRRLLYL 320 (361)
T ss_dssp SEEEESCCCSTHHHHHHHHHHTTCCSCEEEEEC-SSHHHHHHHHHHHHTTSTT-GGGSCHHHHHHHHHH
T ss_pred CEEEEcCchHHHHHHHHHHHhcCCCeEEEEECC-CCHHHHHHHHHHHHhcccc-ccCCCHHHHHHHHHH
Confidence 55554433333333323334 444433444443 4677788888765442100 013555666555543
No 267
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.17 E-value=0.037 Score=56.67 Aligned_cols=22 Identities=23% Similarity=0.537 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHc
Q 007244 23 VIMVGAPGSGKSTFCEHVMRSS 44 (611)
Q Consensus 23 IvLvG~PGSGKST~A~~L~~~~ 44 (611)
++|.||||+||||+++.+++.+
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999998774
No 268
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.15 E-value=0.011 Score=56.06 Aligned_cols=25 Identities=28% Similarity=0.305 Sum_probs=22.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244 20 QILVIMVGAPGSGKSTFCEHVMRSS 44 (611)
Q Consensus 20 p~LIvLvG~PGSGKST~A~~L~~~~ 44 (611)
..+++++|++||||||++.+|+..+
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhh
Confidence 4579999999999999999998764
No 269
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.14 E-value=0.0099 Score=56.84 Aligned_cols=26 Identities=27% Similarity=0.629 Sum_probs=22.4
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRS 43 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~ 43 (611)
++..+++|+|+|||||||+++.++..
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 21 PQGFFIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 34579999999999999999998753
No 270
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.12 E-value=0.013 Score=61.18 Aligned_cols=40 Identities=25% Similarity=0.253 Sum_probs=29.5
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchh
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTI 56 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D~i 56 (611)
.++|.+|+|+|++||||||+++.|+..+ +........|..
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~ 168 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTF 168 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeeccc
Confidence 3678999999999999999999987643 223334455543
No 271
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=95.10 E-value=0.013 Score=60.26 Aligned_cols=31 Identities=19% Similarity=0.380 Sum_probs=26.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEee
Q 007244 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARIC 52 (611)
Q Consensus 22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is 52 (611)
-++|.|+||+|||++|+.+++.++.++..++
T Consensus 48 ~vll~G~pGtGKT~la~~la~~~~~~~~~i~ 78 (331)
T 2r44_A 48 HILLEGVPGLAKTLSVNTLAKTMDLDFHRIQ 78 (331)
T ss_dssp CEEEESCCCHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCCCeEEEe
Confidence 4889999999999999999999887766554
No 272
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.09 E-value=0.016 Score=58.45 Aligned_cols=35 Identities=17% Similarity=0.266 Sum_probs=27.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEeecch
Q 007244 21 ILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDT 55 (611)
Q Consensus 21 ~LIvLvG~PGSGKST~A~~L~~~~~---~~~~~Is~D~ 55 (611)
..++|.|+||+||||+|+.+++.+. .++..++...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~ 85 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTE 85 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGG
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeeccc
Confidence 5799999999999999999998763 3355565433
No 273
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.05 E-value=0.013 Score=55.70 Aligned_cols=26 Identities=19% Similarity=0.318 Sum_probs=22.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSS 44 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~ 44 (611)
+..+++++|++||||||++++|...+
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 34578999999999999999998753
No 274
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.01 E-value=0.016 Score=53.95 Aligned_cols=27 Identities=30% Similarity=0.486 Sum_probs=24.3
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSS 44 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~ 44 (611)
+...++.|+|+.|||||||.+.++..+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 566799999999999999999998875
No 275
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.00 E-value=0.059 Score=56.92 Aligned_cols=36 Identities=25% Similarity=0.239 Sum_probs=27.3
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeec
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQ 53 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~ 53 (611)
+...++.|.|+||||||||+.+++... +.....|+.
T Consensus 59 ~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~ 97 (356)
T 3hr8_A 59 PRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDA 97 (356)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEec
Confidence 346799999999999999999987653 333445554
No 276
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.00 E-value=0.013 Score=60.43 Aligned_cols=27 Identities=33% Similarity=0.365 Sum_probs=23.7
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSS 44 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~ 44 (611)
+++.+|.|+|++||||||+++.++..+
T Consensus 100 ~~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 100 PKGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp CSSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 367899999999999999999988654
No 277
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.00 E-value=0.047 Score=56.08 Aligned_cols=38 Identities=18% Similarity=0.256 Sum_probs=29.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchh
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTI 56 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D~i 56 (611)
++.+|+++|++|+||||++..++..+ +.....++.|..
T Consensus 97 ~~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~ 137 (297)
T 1j8m_F 97 IPYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVY 137 (297)
T ss_dssp SSEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 38899999999999999999987654 445556776654
No 278
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Probab=94.98 E-value=0.047 Score=57.37 Aligned_cols=28 Identities=25% Similarity=0.288 Sum_probs=24.3
Q ss_pred CCcEEEEEEcCCCCcHHHHH-HHHHHHcC
Q 007244 18 WKQILVIMVGAPGSGKSTFC-EHVMRSSA 45 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A-~~L~~~~~ 45 (611)
.....|+|-|+-||||||++ +.|.+.++
T Consensus 10 ~~~~~I~iEG~~GaGKTT~~~~~L~~~l~ 38 (341)
T 1osn_A 10 MGVLRIYLDGAYGIGKTTAAEEFLHHFAI 38 (341)
T ss_dssp EEEEEEEEEESSSSCTTHHHHHHHHTTTT
T ss_pred CCceEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 44679999999999999999 99888665
No 279
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.93 E-value=0.016 Score=63.84 Aligned_cols=35 Identities=20% Similarity=0.192 Sum_probs=29.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeec
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ 53 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~ 53 (611)
.+..++|.||||+||||+|+.+++.++..+..++.
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~ 110 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNA 110 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeC
Confidence 45689999999999999999999999866655553
No 280
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=94.92 E-value=0.013 Score=64.61 Aligned_cols=108 Identities=9% Similarity=0.017 Sum_probs=65.7
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEe-e----cchhccCCCCcHHHHHHHHHHHHHCCCcEEEecCCCCHH
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARI-C----QDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNLERE 91 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~I-s----~D~i~~~~~~~~~~~~~~~~~~L~~Gk~VIID~tnl~~~ 91 (611)
.+.+.||+|=|.-||||+|.+++|.+.++.....+ . .+.-...++. + ......=..|..+|.|...++.-
T Consensus 40 ~~~~vlIvfEG~D~AGKg~~Ik~l~~~l~prg~~V~a~~~Pt~~E~~~~yl-~----R~~~~lP~~G~IvIfdRSwYs~~ 114 (500)
T 3czp_A 40 ARFPVIILINGIEGAGKGETVKLLNEWMDPRLIEVQSFLRPSDEELERPPQ-W----RFWRRLPPKGRTGIFFGNWYSQM 114 (500)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECSSCCHHHHTSCTT-H----HHHHHCCCTTCEEEEESCHHHHH
T ss_pred CCCCEEEEEeCcCCCCHHHHHHHHHHhcCccCCeEEEeCCCChhhccCChh-h----hHHHhCCCCCeEEEEeCchhhHH
Confidence 47789999999999999999999999988543322 2 1111112221 1 12222225788899998543332
Q ss_pred ------------HHHH---HH----Hh-CCCCCeEEEEEEeCCHHHHHHHHHhccccc
Q 007244 92 ------------QRTD---FV----KL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHE 129 (611)
Q Consensus 92 ------------~R~~---~~----~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~ 129 (611)
.... .+ .. ...|+.+..|||++|.++..+|+..|...+
T Consensus 115 ~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~KffL~is~eeq~kRl~~R~~~p 172 (500)
T 3czp_A 115 LYARVEGHIKEAKLDQAIDAAERFERMLCDEGALLFKFWFHLSKKQLKERLKALEKDP 172 (500)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHCC-------
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEECCHHHHHHHHHHHhcCC
Confidence 1111 11 12 456788899999999999999999997643
No 281
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.90 E-value=0.015 Score=59.85 Aligned_cols=28 Identities=25% Similarity=0.383 Sum_probs=24.4
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRSS 44 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~ 44 (611)
..++.++.|+|++||||||+++.++..+
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3568899999999999999999988653
No 282
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.83 E-value=0.017 Score=58.14 Aligned_cols=27 Identities=33% Similarity=0.427 Sum_probs=23.4
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSS 44 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~ 44 (611)
.+..+++++||+||||||+.+.+...+
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 556799999999999999999987643
No 283
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=94.81 E-value=0.017 Score=64.29 Aligned_cols=36 Identities=28% Similarity=0.586 Sum_probs=30.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecc
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQD 54 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D 54 (611)
++..++|+||||+||||+++.++..++.++..++..
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~ 142 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLG 142 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEec
Confidence 466899999999999999999999988777666543
No 284
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=94.80 E-value=0.012 Score=57.76 Aligned_cols=27 Identities=22% Similarity=0.338 Sum_probs=23.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSSA 45 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~~ 45 (611)
+...+++.||||+||||+|..+++.+.
T Consensus 57 kkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 57 KKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp TCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred cccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345689999999999999999998865
No 285
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=94.80 E-value=0.012 Score=56.91 Aligned_cols=26 Identities=19% Similarity=0.326 Sum_probs=23.1
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRS 43 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~ 43 (611)
++..+++|+|+||||||||+..++..
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 45679999999999999999999874
No 286
>3sig_A PArg, poly(ADP-ribose) glycohydrolase; HET: AR6; 1.28A {Thermomonospora curvata} PDB: 3sih_A 3sii_A* 3sij_A
Probab=94.78 E-value=0.011 Score=60.41 Aligned_cols=42 Identities=10% Similarity=0.083 Sum_probs=38.9
Q ss_pred hhhcccCCCCCCCccccccCccCCCCCChHHHHHHHHHHHHH
Q 007244 265 ASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEE 306 (611)
Q Consensus 265 ~s~~~~~~~~~~~SiAfPaIStGi~gfP~~~aa~Iiv~tv~~ 306 (611)
..+|.+|..+|.++|++||+|+|+||+|.+++|++..+.+.+
T Consensus 201 r~vL~iA~~~g~~~LVLGA~GCGvfgnpp~~VA~~~~~vL~~ 242 (277)
T 3sig_A 201 AKVLAAARHHGHRRLVLGAWGCGVFGNDPAQVAETFAGLLLD 242 (277)
T ss_dssp HHHHHHHHHTTCCEEEECCTTSSTTCCCHHHHHHHHHHHHST
T ss_pred HHHHHHHHHcCCCEEEECCcccCcCCCCHHHHHHHHHHHHhh
Confidence 457799999999999999999999999999999999998874
No 287
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=94.73 E-value=0.017 Score=61.58 Aligned_cols=30 Identities=20% Similarity=0.223 Sum_probs=26.0
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHHcCC
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSAR 46 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~~ 46 (611)
-+.+.+++|+|||||||||+++.++..++.
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g 195 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALLELCGG 195 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcCC
Confidence 456679999999999999999999987764
No 288
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.68 E-value=0.016 Score=56.16 Aligned_cols=26 Identities=27% Similarity=0.647 Sum_probs=22.2
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRS 43 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~ 43 (611)
++..+++|.|+||||||||+.+++..
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~~~ 46 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFLWN 46 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34679999999999999999988653
No 289
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.66 E-value=0.016 Score=58.53 Aligned_cols=27 Identities=22% Similarity=0.342 Sum_probs=23.2
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRS 43 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~ 43 (611)
-.+..+++|+|+||||||||++.++..
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 345679999999999999999998764
No 290
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=94.63 E-value=0.09 Score=54.13 Aligned_cols=101 Identities=16% Similarity=0.109 Sum_probs=57.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHc------CCCeEEeecchhccCCCCcHHHHHHHHHHHHHC------CCcEEEecCC
Q 007244 20 QILVIMVGAPGSGKSTFCEHVMRSS------ARPWARICQDTINKGKSGTKVQCLTSASSALKK------GKSVFLDRCN 87 (611)
Q Consensus 20 p~LIvLvG~PGSGKST~A~~L~~~~------~~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L~~------Gk~VIID~tn 87 (611)
+..++|.||||+||||+|+.+++.. ...+..++.+ +.....+++.+ +.+.+.. .+.+|||...
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~----~~~~~id~ir~-li~~~~~~p~~~~~kvviIdead 92 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPE----GENIGIDDIRT-IKDFLNYSPELYTRKYVIVHDCE 92 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCS----SSCBCHHHHHH-HHHHHTSCCSSSSSEEEEETTGG
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCC----cCCCCHHHHHH-HHHHHhhccccCCceEEEeccHH
Confidence 5688999999999999999998863 2234444432 11122222322 2233321 2457888744
Q ss_pred -CCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhc
Q 007244 88 -LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKR 125 (611)
Q Consensus 88 -l~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R 125 (611)
++......+++. .+.+....+|++-...+.+..-+..|
T Consensus 93 ~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR 132 (305)
T 2gno_A 93 RMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR 132 (305)
T ss_dssp GBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT
T ss_pred HhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce
Confidence 455555666666 66555555666544443444444445
No 291
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.54 E-value=0.016 Score=57.37 Aligned_cols=27 Identities=30% Similarity=0.334 Sum_probs=23.1
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSS 44 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~ 44 (611)
.+..++.|+||+||||||+.+.+..-.
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 456789999999999999999887643
No 292
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.50 E-value=0.022 Score=60.31 Aligned_cols=28 Identities=25% Similarity=0.383 Sum_probs=24.4
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRSS 44 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~ 44 (611)
..++.+|.|+|++||||||+++.|+..+
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 3568999999999999999999988653
No 293
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.49 E-value=0.019 Score=59.46 Aligned_cols=28 Identities=25% Similarity=0.489 Sum_probs=24.2
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRSS 44 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~ 44 (611)
-++..++.|+||+|||||||++.|..-+
T Consensus 123 i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp CTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred ecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 3556789999999999999999998765
No 294
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.44 E-value=0.013 Score=55.52 Aligned_cols=25 Identities=28% Similarity=0.496 Sum_probs=21.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244 21 ILVIMVGAPGSGKSTFCEHVMRSSA 45 (611)
Q Consensus 21 ~LIvLvG~PGSGKST~A~~L~~~~~ 45 (611)
.++.|+|++||||||+++.|...+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4789999999999999999987643
No 295
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=94.43 E-value=0.028 Score=55.70 Aligned_cols=34 Identities=21% Similarity=0.401 Sum_probs=27.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEeec
Q 007244 20 QILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQ 53 (611)
Q Consensus 20 p~LIvLvG~PGSGKST~A~~L~~~~~---~~~~~Is~ 53 (611)
+.-|+|.|+||+|||++|+.+..... .+++.++.
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~ 65 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEG
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEec
Confidence 34578999999999999999988765 35766764
No 296
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.42 E-value=0.0082 Score=70.03 Aligned_cols=45 Identities=18% Similarity=0.252 Sum_probs=35.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCc
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGT 63 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~ 63 (611)
.+..++|.||||+||||+|+.++..++..++.++...+...+.+.
T Consensus 510 ~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~ 554 (806)
T 1ypw_A 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGE 554 (806)
T ss_dssp CCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTCCTTT
T ss_pred CCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhhhcCc
Confidence 456688999999999999999999988777667665555444443
No 297
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.39 E-value=0.25 Score=53.34 Aligned_cols=37 Identities=19% Similarity=0.299 Sum_probs=27.7
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHH----cCCCeEEeec
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRS----SARPWARICQ 53 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~----~~~~~~~Is~ 53 (611)
-.+..+++|.|+||+|||||+..++.. .+.+...++.
T Consensus 200 l~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 200 FQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp BCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 345679999999999999999998753 2334555654
No 298
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.35 E-value=0.042 Score=57.58 Aligned_cols=38 Identities=29% Similarity=0.233 Sum_probs=29.0
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecc
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQD 54 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D 54 (611)
.+++.+|+|+|.||+||||++.+|...+ +.....++.|
T Consensus 76 ~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~D 116 (355)
T 3p32_A 76 SGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVD 116 (355)
T ss_dssp CCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecC
Confidence 4567789999999999999999998664 3444555544
No 299
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=94.31 E-value=0.049 Score=63.72 Aligned_cols=24 Identities=25% Similarity=0.513 Sum_probs=21.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHc
Q 007244 21 ILVIMVGAPGSGKSTFCEHVMRSS 44 (611)
Q Consensus 21 ~LIvLvG~PGSGKST~A~~L~~~~ 44 (611)
.-++|+|+||+||||+++.++...
T Consensus 192 ~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp CCCEEEECTTSCHHHHHHHHHHHH
T ss_pred CceEEEcCCCCCHHHHHHHHHHHH
Confidence 347899999999999999999876
No 300
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=94.30 E-value=0.025 Score=54.73 Aligned_cols=26 Identities=27% Similarity=0.433 Sum_probs=21.6
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRS 43 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~ 43 (611)
.++.+++++|+||||||++|..+...
T Consensus 3 ~~~mi~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 3 AMAEICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred cceeEEEEEeCCCCCHHHHHHHHHHH
Confidence 45679999999999999999987544
No 301
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.30 E-value=0.025 Score=53.86 Aligned_cols=25 Identities=24% Similarity=0.175 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244 20 QILVIMVGAPGSGKSTFCEHVMRSS 44 (611)
Q Consensus 20 p~LIvLvG~PGSGKST~A~~L~~~~ 44 (611)
..+++++|+|||||||++.+++..+
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999997776543
No 302
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=94.28 E-value=0.021 Score=59.41 Aligned_cols=28 Identities=21% Similarity=0.184 Sum_probs=24.9
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRSS 44 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~ 44 (611)
...|..++|.||||+|||++++.+++++
T Consensus 42 ~~~~~~lli~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 42 SSQNKLFYITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp TTCCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4567788999999999999999999876
No 303
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=94.28 E-value=0.027 Score=52.90 Aligned_cols=26 Identities=27% Similarity=0.501 Sum_probs=22.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSS 44 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~ 44 (611)
....|+|+|++||||||+.+.+....
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCC
Confidence 34678999999999999999998753
No 304
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=94.22 E-value=0.15 Score=52.18 Aligned_cols=28 Identities=32% Similarity=0.493 Sum_probs=24.0
Q ss_pred cCCCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244 16 KKWKQILVIMVGAPGSGKSTFCEHVMRS 43 (611)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~ 43 (611)
.++.+-.|.++|.||+|||||.+++...
T Consensus 6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 6 HHMKVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 4567789999999999999999999764
No 305
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.18 E-value=0.18 Score=54.32 Aligned_cols=36 Identities=17% Similarity=0.187 Sum_probs=27.4
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHc----CCCeEEeec
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSS----ARPWARICQ 53 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~----~~~~~~Is~ 53 (611)
.+..+++|.|+||+|||||+..++... +.+...++.
T Consensus 198 ~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 198 GPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 456799999999999999999987532 345555654
No 306
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=94.18 E-value=0.028 Score=61.20 Aligned_cols=23 Identities=26% Similarity=0.589 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHc
Q 007244 22 LVIMVGAPGSGKSTFCEHVMRSS 44 (611)
Q Consensus 22 LIvLvG~PGSGKST~A~~L~~~~ 44 (611)
-++|+|+||+|||++++.++...
T Consensus 203 ~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 203 NPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp EEEEESCTTTTTHHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999999885
No 307
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.17 E-value=0.063 Score=56.82 Aligned_cols=36 Identities=17% Similarity=0.253 Sum_probs=27.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecc
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQD 54 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D 54 (611)
...+++|.|+||+||||||..++... +.....|+.+
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E 111 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAE 111 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECC
Confidence 45689999999999999999987643 3455566654
No 308
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.17 E-value=0.018 Score=56.51 Aligned_cols=27 Identities=37% Similarity=0.347 Sum_probs=22.6
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSS 44 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~ 44 (611)
....++.|+|++||||||+.+.++.-.
T Consensus 28 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp ETTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345689999999999999999987543
No 309
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.17 E-value=0.022 Score=56.51 Aligned_cols=26 Identities=31% Similarity=0.448 Sum_probs=22.6
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRS 43 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~ 43 (611)
.+..++.|+|++||||||+.+.++.-
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45678999999999999999998764
No 310
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.14 E-value=0.14 Score=53.93 Aligned_cols=104 Identities=19% Similarity=0.164 Sum_probs=54.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcCC---CeEEeecchhcc---C--------CCC-cHHHHHHHHHHHHHCCCcE-E
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSSAR---PWARICQDTINK---G--------KSG-TKVQCLTSASSALKKGKSV-F 82 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~---~~~~Is~D~i~~---~--------~~~-~~~~~~~~~~~~L~~Gk~V-I 82 (611)
+..+++++||+||||||+.+.+...... ..+..-.|.+.- . ... ....+...+.++|.....+ +
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~Pdvil 201 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIIL 201 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEe
Confidence 4459999999999999999998765431 122222222210 0 000 0012335677788777654 5
Q ss_pred EecCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHH
Q 007244 83 LDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSV 123 (611)
Q Consensus 83 ID~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~ 123 (611)
+|- +...+....++++...|..+.++.=+.+......|+.
T Consensus 202 lDE-p~d~e~~~~~~~~~~~G~~vl~t~H~~~~~~~~dRli 241 (356)
T 3jvv_A 202 VGE-MRDLETIRLALTAAETGHLVFGTLHTTSAAKTIDRVV 241 (356)
T ss_dssp ESC-CCSHHHHHHHHHHHHTTCEEEEEESCSSHHHHHHHHH
T ss_pred cCC-CCCHHHHHHHHHHHhcCCEEEEEEccChHHHHHHHHh
Confidence 555 5566555555555222333322222344444556654
No 311
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.11 E-value=0.027 Score=59.61 Aligned_cols=28 Identities=43% Similarity=0.686 Sum_probs=23.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcCC
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSSAR 46 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~ 46 (611)
....|+|+|+|||||||+++.|++.++.
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la~~l~~ 50 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELCQIINE 50 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 3456889999999999999999988763
No 312
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=94.08 E-value=0.022 Score=57.28 Aligned_cols=26 Identities=19% Similarity=0.247 Sum_probs=22.6
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRS 43 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~ 43 (611)
+...+++|+|+||||||||+..++..
T Consensus 28 ~~G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 28 VAGTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 35679999999999999999998763
No 313
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=94.07 E-value=0.094 Score=55.26 Aligned_cols=36 Identities=25% Similarity=0.326 Sum_probs=27.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecc
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQD 54 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D 54 (611)
+..+++|.|+|||||||||.+++... +.....|+.+
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E 100 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 100 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 55799999999999999999987642 3345556653
No 314
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.06 E-value=0.026 Score=56.06 Aligned_cols=27 Identities=26% Similarity=0.366 Sum_probs=23.3
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSS 44 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~ 44 (611)
.+..++.|+|++||||||+.+.++.-.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 456789999999999999999987643
No 315
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=93.98 E-value=0.053 Score=53.27 Aligned_cols=39 Identities=28% Similarity=0.371 Sum_probs=29.8
Q ss_pred cCCCcEEEEEEcCCCCcHHHHHHHHHHHc--CCCeEEeecc
Q 007244 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSS--ARPWARICQD 54 (611)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~--~~~~~~Is~D 54 (611)
...++.+++++|.+|+||||++..++..+ +.....++.|
T Consensus 10 ~~~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D 50 (262)
T 1yrb_A 10 HGMASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLD 50 (262)
T ss_dssp TTCCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECC
T ss_pred CCcceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 34557899999999999999999998654 3345566655
No 316
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=93.97 E-value=0.12 Score=52.33 Aligned_cols=35 Identities=14% Similarity=0.247 Sum_probs=28.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecch
Q 007244 21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDT 55 (611)
Q Consensus 21 ~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~ 55 (611)
.+++|.|++|+||||+++++.+.....+..++...
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~ 65 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRK 65 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGG
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchh
Confidence 38999999999999999999988765555565443
No 317
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.93 E-value=0.029 Score=55.86 Aligned_cols=25 Identities=28% Similarity=0.481 Sum_probs=22.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244 21 ILVIMVGAPGSGKSTFCEHVMRSSA 45 (611)
Q Consensus 21 ~LIvLvG~PGSGKST~A~~L~~~~~ 45 (611)
.++.|+|++||||||+.+.++.-..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCC
Confidence 7899999999999999999876543
No 318
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.92 E-value=0.026 Score=54.08 Aligned_cols=23 Identities=30% Similarity=0.538 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHc
Q 007244 22 LVIMVGAPGSGKSTFCEHVMRSS 44 (611)
Q Consensus 22 LIvLvG~PGSGKST~A~~L~~~~ 44 (611)
++.|+|++||||||+++.++..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 58999999999999999988754
No 319
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=93.91 E-value=0.075 Score=61.20 Aligned_cols=38 Identities=21% Similarity=0.302 Sum_probs=30.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchhccC
Q 007244 22 LVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKG 59 (611)
Q Consensus 22 LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D~i~~~ 59 (611)
-++|.||||+|||++|+.+++.+ +.+++.++...+...
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~ 563 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEK 563 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccc
Confidence 68999999999999999999876 456777876665443
No 320
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=93.90 E-value=0.044 Score=56.90 Aligned_cols=40 Identities=20% Similarity=0.239 Sum_probs=30.2
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchh
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTI 56 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D~i 56 (611)
..++.+|+|+|++|+||||++..|+..+ +.....++.|..
T Consensus 102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~ 144 (320)
T 1zu4_A 102 ENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTF 144 (320)
T ss_dssp TTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 3568899999999999999999987643 344555666653
No 321
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=93.90 E-value=0.026 Score=56.87 Aligned_cols=28 Identities=29% Similarity=0.398 Sum_probs=23.5
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~ 45 (611)
....++.|+|++||||||+.+.++.-..
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4567899999999999999999876443
No 322
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=93.86 E-value=0.037 Score=52.96 Aligned_cols=34 Identities=24% Similarity=0.486 Sum_probs=26.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh
Q 007244 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (611)
Q Consensus 20 p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i 56 (611)
..-|+|+|+||+||||+|..|.++ + +..++.|..
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r-G--~~lvaDD~v 49 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR-G--HQLVCDDVI 49 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT-T--CEEEESSEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc-C--CeEecCCEE
Confidence 346899999999999999999885 3 555666554
No 323
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=93.75 E-value=0.024 Score=57.27 Aligned_cols=27 Identities=26% Similarity=0.337 Sum_probs=22.9
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSS 44 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~ 44 (611)
.+..++.|+|++||||||+.+.++.-.
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 456789999999999999999987643
No 324
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=93.74 E-value=0.033 Score=53.94 Aligned_cols=36 Identities=22% Similarity=0.385 Sum_probs=26.3
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHH----cCCCeEEeec
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRS----SARPWARICQ 53 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~----~~~~~~~Is~ 53 (611)
++..++++.|+||+|||+||.+++.. .+.....++.
T Consensus 28 ~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~ 67 (251)
T 2zts_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc
Confidence 45679999999999999999987532 2344444554
No 325
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=93.73 E-value=0.037 Score=58.56 Aligned_cols=27 Identities=33% Similarity=0.427 Sum_probs=23.4
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSS 44 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~ 44 (611)
.+..+++++|++||||||+.+.+...+
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 456799999999999999999988654
No 326
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=93.72 E-value=0.024 Score=57.73 Aligned_cols=27 Identities=22% Similarity=0.300 Sum_probs=22.8
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSS 44 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~ 44 (611)
.+..++.|+||+||||||+.+.+..-.
T Consensus 32 ~~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 345789999999999999999987644
No 327
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.71 E-value=0.034 Score=56.10 Aligned_cols=26 Identities=27% Similarity=0.373 Sum_probs=22.7
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRS 43 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~ 43 (611)
....++.|+|++||||||+.+.++.-
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45678999999999999999998764
No 328
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=93.71 E-value=0.061 Score=56.09 Aligned_cols=27 Identities=33% Similarity=0.381 Sum_probs=23.5
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRS 43 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~ 43 (611)
-.+..++.|+|+|||||||+.+.+...
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~ 78 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGSL 78 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 356789999999999999999998754
No 329
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.70 E-value=0.029 Score=56.63 Aligned_cols=27 Identities=33% Similarity=0.490 Sum_probs=23.1
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSS 44 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~ 44 (611)
....++.|+|++||||||+.+.++.-.
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 456789999999999999999987644
No 330
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=93.70 E-value=0.025 Score=56.41 Aligned_cols=28 Identities=32% Similarity=0.387 Sum_probs=23.3
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~ 45 (611)
.+..++.|+|++||||||+.+.++.-..
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3456899999999999999999876543
No 331
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=93.69 E-value=0.03 Score=56.75 Aligned_cols=28 Identities=29% Similarity=0.388 Sum_probs=23.6
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~ 45 (611)
.+..++.|+|++||||||+.+.++.-+.
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4567899999999999999999876543
No 332
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=93.69 E-value=0.03 Score=55.88 Aligned_cols=26 Identities=27% Similarity=0.331 Sum_probs=22.4
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRS 43 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~ 43 (611)
.+..++.|+|++||||||+.+.++.-
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35568999999999999999998763
No 333
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=93.65 E-value=0.031 Score=56.25 Aligned_cols=27 Identities=33% Similarity=0.362 Sum_probs=23.0
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSS 44 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~ 44 (611)
+...++.|+|++||||||+.+.+..-+
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 456789999999999999999987643
No 334
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.63 E-value=0.027 Score=55.91 Aligned_cols=28 Identities=25% Similarity=0.350 Sum_probs=23.3
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~ 45 (611)
....++.|+|++||||||+.+.++.-..
T Consensus 30 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3556899999999999999999876443
No 335
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=93.59 E-value=0.054 Score=54.11 Aligned_cols=30 Identities=23% Similarity=0.359 Sum_probs=25.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEee
Q 007244 21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARIC 52 (611)
Q Consensus 21 ~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is 52 (611)
.+|.|+|.+||||||+++.+.+.++ +.++.
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~~g--~~~~~ 31 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSNYS--AVKYQ 31 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSC--EEECC
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC--CeEEe
Confidence 4799999999999999999988777 44444
No 336
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=93.57 E-value=0.027 Score=56.40 Aligned_cols=28 Identities=29% Similarity=0.362 Sum_probs=23.2
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~ 45 (611)
....++.|+|++||||||+.+.++.-..
T Consensus 31 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3456899999999999999999876443
No 337
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.56 E-value=0.032 Score=56.07 Aligned_cols=28 Identities=18% Similarity=0.201 Sum_probs=23.5
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~ 45 (611)
....++.|+|++||||||+.+.++.-..
T Consensus 39 ~~Gei~~l~G~NGsGKSTLlk~l~Gl~~ 66 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4567899999999999999999876443
No 338
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=93.54 E-value=0.028 Score=55.35 Aligned_cols=27 Identities=22% Similarity=0.452 Sum_probs=23.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSSA 45 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~~ 45 (611)
+..++.|+|++||||||+.+.++.-..
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 456899999999999999999876543
No 339
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=93.50 E-value=0.048 Score=49.57 Aligned_cols=26 Identities=23% Similarity=0.466 Sum_probs=21.8
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRS 43 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~ 43 (611)
....-|+++|.+|+|||||.+++...
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhC
Confidence 34567899999999999999999864
No 340
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=93.47 E-value=0.034 Score=56.05 Aligned_cols=27 Identities=30% Similarity=0.325 Sum_probs=23.0
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSS 44 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~ 44 (611)
....++.|+|++||||||+.+.++.-.
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 456789999999999999999987643
No 341
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=93.43 E-value=0.048 Score=49.71 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHH
Q 007244 21 ILVIMVGAPGSGKSTFCEHVMR 42 (611)
Q Consensus 21 ~LIvLvG~PGSGKST~A~~L~~ 42 (611)
..|+|+|+||+||||+.+++..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 5689999999999999999975
No 342
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=93.41 E-value=0.052 Score=48.64 Aligned_cols=25 Identities=24% Similarity=0.418 Sum_probs=21.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRS 43 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~ 43 (611)
...-|+++|.+|+|||||.+++...
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcC
Confidence 3456899999999999999999864
No 343
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=93.41 E-value=0.025 Score=55.33 Aligned_cols=27 Identities=26% Similarity=0.304 Sum_probs=22.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSSA 45 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~~ 45 (611)
...++.|+|++||||||+.+.++.-..
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 456789999999999999999876443
No 344
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=93.40 E-value=0.068 Score=55.75 Aligned_cols=26 Identities=12% Similarity=0.139 Sum_probs=23.5
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRS 43 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~ 43 (611)
+...+++|.|+||||||||+..++..
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45689999999999999999999875
No 345
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.39 E-value=0.026 Score=54.92 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRS 43 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~ 43 (611)
...++.|+|++||||||+.+.++..
T Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 21 TNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3568999999999999999998754
No 346
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=93.39 E-value=0.057 Score=48.98 Aligned_cols=26 Identities=27% Similarity=0.431 Sum_probs=22.4
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRS 43 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~ 43 (611)
....-|+++|.+|+|||||.+++...
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 34567899999999999999999875
No 347
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=93.39 E-value=0.059 Score=59.45 Aligned_cols=107 Identities=10% Similarity=0.038 Sum_probs=69.9
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHcCCC-eEEee----cchhccCCCCcHHHHHHHHHHHHHCCCcEEEecCCCCHH-
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARP-WARIC----QDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNLERE- 91 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~-~~~Is----~D~i~~~~~~~~~~~~~~~~~~L~~Gk~VIID~tnl~~~- 91 (611)
+.+.||+|=|.-||||+|.+++|.+.++.. +.++. .+.-...++. + ......=..|..+|.|...+..-
T Consensus 298 ~~~vlIvfEG~DaAGKg~~Ik~l~~~ldprg~~V~~~~~Pt~~E~~~~yl-~----R~~~~lP~~G~i~IfDRswY~~~~ 372 (500)
T 3czp_A 298 QHSLVAVFEGNDAAGKGGAIRRVTDALDPRQYHIVPIAAPTEEERAQPYL-W----RFWRHIPARRQFTIFDRSWYGRVL 372 (500)
T ss_dssp GCEEEEEEEESTTSCHHHHHHHHHTTSCGGGCEEEECCSCCHHHHTSCTT-H----HHHTTCCCTTCEEEEESCGGGGGT
T ss_pred CCCEEEEEeccCCCCHHHHHHHHHHhcCccCCeEEEeCCCChhhhcchHH-H----HHHHhCCCCCeEEEEeCcchhhHH
Confidence 578999999999999999999999988743 22222 1111112222 1 11111224788899999665542
Q ss_pred -----------HHH-HHHH------h-CCCCCeEEEEEEeCCHHHHHHHHHhccccc
Q 007244 92 -----------QRT-DFVK------L-GGPEVDVHAVVLDLPAKLCISRSVKRIEHE 129 (611)
Q Consensus 92 -----------~R~-~~~~------l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~ 129 (611)
+.. .+.. . ...|..+..|||++|.++..+|+..|...+
T Consensus 373 v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~Kf~L~is~eeQ~~R~~~R~~~p 429 (500)
T 3czp_A 373 VERIEGFCAPADWLRAYGEINDFEEQLSEYGIIVVKFWLAIDKQTQMERFKEREKTP 429 (500)
T ss_dssp HHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTEEEEEEEEECCHHHHHHHHHHHHHSS
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHhhCCCeEEEEEEECCHHHHHHHHHHHhcCC
Confidence 111 1111 1 345778899999999999999999997644
No 348
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.38 E-value=0.052 Score=51.79 Aligned_cols=27 Identities=30% Similarity=0.460 Sum_probs=23.1
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSSA 45 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~~ 45 (611)
....|+++|.+||||||++.++...+.
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 456789999999999999999987753
No 349
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=93.38 E-value=0.045 Score=63.05 Aligned_cols=23 Identities=26% Similarity=0.589 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHc
Q 007244 22 LVIMVGAPGSGKSTFCEHVMRSS 44 (611)
Q Consensus 22 LIvLvG~PGSGKST~A~~L~~~~ 44 (611)
-++|+|+||+|||++|+.+++.+
T Consensus 203 ~vLL~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 203 NPVLIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp EEEEESCTTTTTHHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999885
No 350
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=93.37 E-value=0.17 Score=54.81 Aligned_cols=36 Identities=14% Similarity=0.198 Sum_probs=27.4
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeec
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQ 53 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~ 53 (611)
.+..++++.|.||+|||||+..++... +.+...++.
T Consensus 195 ~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSl 233 (444)
T 3bgw_A 195 KRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 233 (444)
T ss_dssp CSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEEC
Confidence 456799999999999999999987543 334555654
No 351
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=93.35 E-value=0.04 Score=51.15 Aligned_cols=26 Identities=31% Similarity=0.443 Sum_probs=22.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244 20 QILVIMVGAPGSGKSTFCEHVMRSSA 45 (611)
Q Consensus 20 p~LIvLvG~PGSGKST~A~~L~~~~~ 45 (611)
+-+.+|+|++||||||+.+.+.-.++
T Consensus 26 ~g~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 26 KGFTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp SSEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHc
Confidence 34899999999999999999977654
No 352
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=93.31 E-value=0.11 Score=59.64 Aligned_cols=26 Identities=23% Similarity=0.403 Sum_probs=22.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSS 44 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~ 44 (611)
.+.-++|+|+||+||||+++.++...
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence 34457899999999999999998875
No 353
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=93.28 E-value=0.046 Score=48.72 Aligned_cols=21 Identities=33% Similarity=0.778 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 007244 23 VIMVGAPGSGKSTFCEHVMRS 43 (611)
Q Consensus 23 IvLvG~PGSGKST~A~~L~~~ 43 (611)
|+++|.+|+||||+.+++...
T Consensus 4 i~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 4 VVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEECCTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999999865
No 354
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=93.26 E-value=0.044 Score=51.54 Aligned_cols=23 Identities=30% Similarity=0.616 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Q 007244 21 ILVIMVGAPGSGKSTFCEHVMRS 43 (611)
Q Consensus 21 ~LIvLvG~PGSGKST~A~~L~~~ 43 (611)
.-|+|+|++|+||||+.+.+...
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999999874
No 355
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=93.19 E-value=0.031 Score=52.75 Aligned_cols=25 Identities=24% Similarity=0.256 Sum_probs=21.6
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHH
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMR 42 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~ 42 (611)
.....|+|+|++||||||+.+.+..
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhC
Confidence 4557899999999999999998864
No 356
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=93.17 E-value=0.034 Score=55.62 Aligned_cols=27 Identities=26% Similarity=0.399 Sum_probs=22.8
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSS 44 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~ 44 (611)
.+..++.|+|++||||||+.+.++.-.
T Consensus 24 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 345689999999999999999987644
No 357
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=93.15 E-value=0.028 Score=57.53 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=21.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcC
Q 007244 23 VIMVGAPGSGKSTFCEHVMRSSA 45 (611)
Q Consensus 23 IvLvG~PGSGKST~A~~L~~~~~ 45 (611)
++|.|+||+|||++|+.+.+.++
T Consensus 48 vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 48 VLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp EEEECCGGGCTTHHHHHHHHHSC
T ss_pred EEEECCCCccHHHHHHHHHHhCc
Confidence 89999999999999999999876
No 358
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=93.15 E-value=0.057 Score=55.77 Aligned_cols=27 Identities=22% Similarity=0.431 Sum_probs=23.4
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSS 44 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~ 44 (611)
+...+++|.|+||||||||+.+++...
T Consensus 105 ~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 105 ETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 345799999999999999999998763
No 359
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=93.14 E-value=0.061 Score=47.74 Aligned_cols=23 Identities=30% Similarity=0.572 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Q 007244 21 ILVIMVGAPGSGKSTFCEHVMRS 43 (611)
Q Consensus 21 ~LIvLvG~PGSGKST~A~~L~~~ 43 (611)
.-|+++|.+|+||||+.+++...
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 34899999999999999999864
No 360
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=93.13 E-value=0.045 Score=57.41 Aligned_cols=27 Identities=22% Similarity=0.270 Sum_probs=24.0
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSS 44 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~ 44 (611)
+...++.|+|+||||||||+..++...
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 456899999999999999999998765
No 361
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=93.11 E-value=0.063 Score=51.37 Aligned_cols=26 Identities=27% Similarity=0.410 Sum_probs=22.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSS 44 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~ 44 (611)
+...|+|+|.+|+||||++.++....
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 45678888999999999999998764
No 362
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=93.10 E-value=0.062 Score=47.86 Aligned_cols=23 Identities=26% Similarity=0.495 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Q 007244 21 ILVIMVGAPGSGKSTFCEHVMRS 43 (611)
Q Consensus 21 ~LIvLvG~PGSGKST~A~~L~~~ 43 (611)
.-|+++|.+|+|||||.+++...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 45899999999999999999864
No 363
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.10 E-value=0.055 Score=51.38 Aligned_cols=28 Identities=29% Similarity=0.356 Sum_probs=22.9
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRSS 44 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~ 44 (611)
.....-|+|+|++|+||||+.+++....
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3445678999999999999999998753
No 364
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=93.09 E-value=0.036 Score=56.45 Aligned_cols=28 Identities=25% Similarity=0.223 Sum_probs=23.3
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~ 45 (611)
.+..++.|+|++||||||+.+.++.-..
T Consensus 45 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3556899999999999999999876543
No 365
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=93.08 E-value=0.048 Score=57.70 Aligned_cols=27 Identities=22% Similarity=0.356 Sum_probs=23.1
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSS 44 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~ 44 (611)
....++.|+||+||||||+.+.++.-.
T Consensus 28 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 28 DPGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 456789999999999999999987644
No 366
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=93.06 E-value=0.036 Score=55.54 Aligned_cols=27 Identities=26% Similarity=0.391 Sum_probs=22.8
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSS 44 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~ 44 (611)
.+..++.|+|++||||||+.+.++.-.
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp ETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345689999999999999999987654
No 367
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=93.04 E-value=0.058 Score=56.52 Aligned_cols=26 Identities=38% Similarity=0.438 Sum_probs=22.9
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRS 43 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~ 43 (611)
+...+|.|+|+|||||||+.+.+...
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 34678999999999999999999864
No 368
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=93.00 E-value=0.068 Score=49.19 Aligned_cols=25 Identities=28% Similarity=0.489 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRS 43 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~ 43 (611)
++.-|+|+|++|+||||+.+++...
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3467999999999999999999863
No 369
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=92.98 E-value=0.048 Score=55.17 Aligned_cols=24 Identities=33% Similarity=0.632 Sum_probs=20.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHc
Q 007244 21 ILVIMVGAPGSGKSTFCEHVMRSS 44 (611)
Q Consensus 21 ~LIvLvG~PGSGKST~A~~L~~~~ 44 (611)
..+.|+|++||||||+.+.|+...
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 358899999999999999998754
No 370
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=92.96 E-value=0.064 Score=48.74 Aligned_cols=26 Identities=23% Similarity=0.368 Sum_probs=22.2
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRS 43 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~ 43 (611)
.++.-|+|+|.+|+||||+.+++...
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45567899999999999999999753
No 371
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=92.93 E-value=0.067 Score=49.05 Aligned_cols=26 Identities=19% Similarity=0.228 Sum_probs=22.3
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRS 43 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~ 43 (611)
....-|+|+|.+|+|||||.+++...
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhcC
Confidence 44567899999999999999999864
No 372
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.93 E-value=0.056 Score=48.42 Aligned_cols=23 Identities=22% Similarity=0.472 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Q 007244 21 ILVIMVGAPGSGKSTFCEHVMRS 43 (611)
Q Consensus 21 ~LIvLvG~PGSGKST~A~~L~~~ 43 (611)
.-|+++|.+|+|||||.+++...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999864
No 373
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=92.93 E-value=0.058 Score=56.53 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=23.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244 20 QILVIMVGAPGSGKSTFCEHVMRSSA 45 (611)
Q Consensus 20 p~LIvLvG~PGSGKST~A~~L~~~~~ 45 (611)
...+.|+|++||||||+++.|+..+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 56789999999999999999998766
No 374
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=92.93 E-value=0.063 Score=57.89 Aligned_cols=68 Identities=16% Similarity=0.196 Sum_probs=41.6
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHcCC--CeEEeecchhccC-------CCCcH--HHHHHHHHHHHHCCCcEEEec
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSSAR--PWARICQDTINKG-------KSGTK--VQCLTSASSALKKGKSVFLDR 85 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~--~~~~Is~D~i~~~-------~~~~~--~~~~~~~~~~L~~Gk~VIID~ 85 (611)
.+..+|+++||+||||||+.+.+...... ..+.+..|.+... ..... ..+...++.+|+....+|+-+
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vg 243 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVG 243 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEES
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhccCCCeEEEc
Confidence 45679999999999999999999887652 1233334433210 00010 112356667777777776544
No 375
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=92.89 E-value=0.056 Score=48.49 Aligned_cols=23 Identities=22% Similarity=0.548 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Q 007244 21 ILVIMVGAPGSGKSTFCEHVMRS 43 (611)
Q Consensus 21 ~LIvLvG~PGSGKST~A~~L~~~ 43 (611)
.-|+++|.+|+|||||.+++...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 45899999999999999999854
No 376
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=92.88 E-value=0.078 Score=48.81 Aligned_cols=26 Identities=15% Similarity=0.319 Sum_probs=22.5
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRS 43 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~ 43 (611)
....-|+|+|.+|+|||||.+++...
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhC
Confidence 34566999999999999999999875
No 377
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=92.86 E-value=0.07 Score=48.92 Aligned_cols=26 Identities=19% Similarity=0.358 Sum_probs=22.1
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRS 43 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~ 43 (611)
....-|+|+|.+|+|||||.+++...
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcC
Confidence 34567899999999999999999864
No 378
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=92.84 E-value=0.058 Score=48.42 Aligned_cols=25 Identities=28% Similarity=0.481 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244 20 QILVIMVGAPGSGKSTFCEHVMRSS 44 (611)
Q Consensus 20 p~LIvLvG~PGSGKST~A~~L~~~~ 44 (611)
..-|+++|.+|+|||||.+++....
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 3568999999999999999998753
No 379
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=92.82 E-value=0.25 Score=53.40 Aligned_cols=94 Identities=19% Similarity=0.175 Sum_probs=47.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCC---CeEEeecchhc---------------cCCCC----cHHHHHHHHHHHHHCC
Q 007244 21 ILVIMVGAPGSGKSTFCEHVMRSSAR---PWARICQDTIN---------------KGKSG----TKVQCLTSASSALKKG 78 (611)
Q Consensus 21 ~LIvLvG~PGSGKST~A~~L~~~~~~---~~~~Is~D~i~---------------~~~~~----~~~~~~~~~~~~L~~G 78 (611)
..|+|+|.||+||||+.+++...... ...-++.|... .|... ...+....+..++...
T Consensus 24 ~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~a 103 (456)
T 4dcu_A 24 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEA 103 (456)
T ss_dssp CEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhhC
Confidence 46899999999999999998643110 00011111110 01100 1223334555555554
Q ss_pred C--cEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCC
Q 007244 79 K--SVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLP 114 (611)
Q Consensus 79 k--~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p 114 (611)
. .+|+|+..........+.++ +..+.++.++.=.++
T Consensus 104 d~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D 142 (456)
T 4dcu_A 104 DVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLD 142 (456)
T ss_dssp SEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC-
T ss_pred CEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECcc
Confidence 4 36778765333334455555 666666655554444
No 380
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=92.77 E-value=0.056 Score=57.63 Aligned_cols=28 Identities=29% Similarity=0.458 Sum_probs=23.7
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~ 45 (611)
....++.|+||+||||||+.+.++.-..
T Consensus 27 ~~Ge~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCCEEEEEcCCCchHHHHHHHHHcCCC
Confidence 4567899999999999999999986443
No 381
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=92.76 E-value=0.059 Score=48.89 Aligned_cols=24 Identities=29% Similarity=0.513 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHH
Q 007244 20 QILVIMVGAPGSGKSTFCEHVMRS 43 (611)
Q Consensus 20 p~LIvLvG~PGSGKST~A~~L~~~ 43 (611)
..-|+++|.+|+|||||.+++...
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 456899999999999999999864
No 382
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=92.75 E-value=0.06 Score=55.37 Aligned_cols=101 Identities=13% Similarity=0.033 Sum_probs=50.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcC----CCeEEeecchhcc---CCCCcHHHHHHHHHHHHHCCCcEEEecCCCCH--
Q 007244 20 QILVIMVGAPGSGKSTFCEHVMRSSA----RPWARICQDTINK---GKSGTKVQCLTSASSALKKGKSVFLDRCNLER-- 90 (611)
Q Consensus 20 p~LIvLvG~PGSGKST~A~~L~~~~~----~~~~~Is~D~i~~---~~~~~~~~~~~~~~~~L~~Gk~VIID~tnl~~-- 90 (611)
+.-++|.|+||+|||++|..++..+. ..+..++...+.. ..+... . .......+.....+|||......
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~~~~~~~-~-~~~~~~~~~~~~lLiiDdig~~~~~ 229 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAISNG-S-VKEEIDAVKNVPVLILDDIGAEQAT 229 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHCCCC------CCTTHHHHTSSEEEEETCCC----
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHHHHhccc-h-HHHHHHHhcCCCEEEEcCCCCCCCC
Confidence 46789999999999999999886543 3444454332211 000000 0 01122344555678899853322
Q ss_pred -HHHHHHHH-h--CC-CCCeEEEEEEeCCHHHHHHHH
Q 007244 91 -EQRTDFVK-L--GG-PEVDVHAVVLDLPAKLCISRS 122 (611)
Q Consensus 91 -~~R~~~~~-l--~~-~~~~v~vV~Ld~p~e~~~~Rl 122 (611)
..+..++. + .. .....+++--..+.+.+...+
T Consensus 230 ~~~~~~ll~~ll~~r~~~~~~~IitSN~~~~~l~~~~ 266 (308)
T 2qgz_A 230 SWVRDEVLQVILQYRMLEELPTFFTSNYSFADLERKW 266 (308)
T ss_dssp --CTTTTHHHHHHHHHHHTCCEEEEESSCHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHH
Confidence 22221211 1 11 111124555567777766543
No 383
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=92.74 E-value=0.068 Score=49.53 Aligned_cols=27 Identities=26% Similarity=0.330 Sum_probs=22.9
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSS 44 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~ 44 (611)
....-|+|+|++|+||||+.+++....
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 445678999999999999999998753
No 384
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=92.74 E-value=0.057 Score=57.07 Aligned_cols=27 Identities=22% Similarity=0.235 Sum_probs=23.1
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSS 44 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~ 44 (611)
....++.|+||+||||||+.+.++.-.
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 27 KDGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 456789999999999999999987643
No 385
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=92.73 E-value=0.1 Score=54.27 Aligned_cols=38 Identities=32% Similarity=0.288 Sum_probs=27.6
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecc
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQD 54 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D 54 (611)
.....+|.++|+||+||||+++.|...+ +.....++.|
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d 93 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVD 93 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeec
Confidence 3566788999999999999999987543 3334444443
No 386
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=92.73 E-value=0.075 Score=47.33 Aligned_cols=24 Identities=42% Similarity=0.508 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHH
Q 007244 20 QILVIMVGAPGSGKSTFCEHVMRS 43 (611)
Q Consensus 20 p~LIvLvG~PGSGKST~A~~L~~~ 43 (611)
+.-|+++|.+|+|||||.+++...
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 345899999999999999999864
No 387
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=92.67 E-value=0.069 Score=49.21 Aligned_cols=24 Identities=25% Similarity=0.523 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHH
Q 007244 20 QILVIMVGAPGSGKSTFCEHVMRS 43 (611)
Q Consensus 20 p~LIvLvG~PGSGKST~A~~L~~~ 43 (611)
+.-|+|+|.||+||||+.+++...
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 456899999999999999999764
No 388
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=92.65 E-value=0.057 Score=48.48 Aligned_cols=20 Identities=40% Similarity=0.680 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 007244 22 LVIMVGAPGSGKSTFCEHVM 41 (611)
Q Consensus 22 LIvLvG~PGSGKST~A~~L~ 41 (611)
-|+|+|.||+|||||.+++.
T Consensus 4 ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 38999999999999999985
No 389
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=92.64 E-value=0.06 Score=56.99 Aligned_cols=27 Identities=26% Similarity=0.329 Sum_probs=23.2
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSS 44 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~ 44 (611)
....++.|+||+||||||+.+.++.-.
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 27 KDGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 456789999999999999999987644
No 390
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=92.63 E-value=0.061 Score=48.43 Aligned_cols=21 Identities=38% Similarity=0.542 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 007244 22 LVIMVGAPGSGKSTFCEHVMR 42 (611)
Q Consensus 22 LIvLvG~PGSGKST~A~~L~~ 42 (611)
-|+++|.+|+||||+.+++..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 389999999999999999863
No 391
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=92.60 E-value=0.041 Score=56.90 Aligned_cols=28 Identities=29% Similarity=0.382 Sum_probs=23.6
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~ 45 (611)
++..++.|+|++||||||+.+.+..-+.
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCCC
Confidence 4567899999999999999999876543
No 392
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=92.58 E-value=0.057 Score=50.13 Aligned_cols=21 Identities=38% Similarity=0.782 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 007244 22 LVIMVGAPGSGKSTFCEHVMR 42 (611)
Q Consensus 22 LIvLvG~PGSGKST~A~~L~~ 42 (611)
-|+|+|+||+|||||.+++..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999875
No 393
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=92.58 E-value=0.062 Score=57.01 Aligned_cols=27 Identities=30% Similarity=0.277 Sum_probs=23.1
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSS 44 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~ 44 (611)
.+..++.|+|++||||||+.+.+..-.
T Consensus 52 ~~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 52 PAGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 456789999999999999999887643
No 394
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=92.58 E-value=0.076 Score=52.38 Aligned_cols=28 Identities=14% Similarity=0.039 Sum_probs=22.8
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRSS 44 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~ 44 (611)
..+..+++++|+||+||||.+..++.++
T Consensus 9 ~~~G~i~litG~mGsGKTT~ll~~~~r~ 36 (223)
T 2b8t_A 9 KKIGWIEFITGPMFAGKTAELIRRLHRL 36 (223)
T ss_dssp --CCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred cCCcEEEEEECCCCCcHHHHHHHHHHHH
Confidence 3456899999999999999998887665
No 395
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=92.57 E-value=0.07 Score=48.39 Aligned_cols=25 Identities=20% Similarity=0.349 Sum_probs=21.2
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHH
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMR 42 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~ 42 (611)
....-|+|+|.+|+|||||.+++..
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCS
T ss_pred CcceEEEEECCCCCCHHHHHHHHhc
Confidence 3445689999999999999999864
No 396
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=92.57 E-value=0.091 Score=47.23 Aligned_cols=26 Identities=19% Similarity=0.440 Sum_probs=22.1
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRS 43 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~ 43 (611)
.++.-|+++|.+|+|||||.+++...
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC
Confidence 34567999999999999999999764
No 397
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=92.56 E-value=0.067 Score=47.87 Aligned_cols=24 Identities=21% Similarity=0.497 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHH
Q 007244 20 QILVIMVGAPGSGKSTFCEHVMRS 43 (611)
Q Consensus 20 p~LIvLvG~PGSGKST~A~~L~~~ 43 (611)
+.-|+++|.+|+|||||.+++...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 456899999999999999999863
No 398
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=92.54 E-value=0.081 Score=48.98 Aligned_cols=26 Identities=19% Similarity=0.302 Sum_probs=22.0
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRS 43 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~ 43 (611)
....-|+++|.+|+|||||.+++...
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34567899999999999999999754
No 399
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=92.54 E-value=0.079 Score=53.80 Aligned_cols=28 Identities=18% Similarity=0.338 Sum_probs=23.8
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~ 45 (611)
++..-|+|.||||+|||++|..++..++
T Consensus 102 ~~~n~~~l~GppgtGKt~~a~ala~~~~ 129 (267)
T 1u0j_A 102 GKRNTIWLFGPATTGKTNIAEAIAHTVP 129 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHhhhc
Confidence 4445699999999999999999998653
No 400
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=92.52 E-value=0.056 Score=55.39 Aligned_cols=27 Identities=22% Similarity=0.399 Sum_probs=23.0
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSS 44 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~ 44 (611)
.+..++.|+|++||||||+.+.++.-.
T Consensus 62 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 456789999999999999999987643
No 401
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=92.51 E-value=0.079 Score=49.58 Aligned_cols=26 Identities=23% Similarity=0.447 Sum_probs=22.1
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRS 43 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~ 43 (611)
....-|+|+|.+|+|||||.+++...
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcC
Confidence 44567999999999999999999865
No 402
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=92.50 E-value=0.064 Score=56.98 Aligned_cols=27 Identities=19% Similarity=0.341 Sum_probs=23.1
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSS 44 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~ 44 (611)
....++.|+||+||||||+.+.++.-.
T Consensus 35 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 35 KDGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 456789999999999999999987643
No 403
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=92.48 E-value=0.082 Score=47.72 Aligned_cols=23 Identities=26% Similarity=0.553 Sum_probs=20.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHH
Q 007244 20 QILVIMVGAPGSGKSTFCEHVMR 42 (611)
Q Consensus 20 p~LIvLvG~PGSGKST~A~~L~~ 42 (611)
+.-|+|+|.||+|||||.+++..
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEEEECCCCccHHHHHHHHhc
Confidence 45689999999999999999874
No 404
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=92.47 E-value=0.085 Score=47.12 Aligned_cols=23 Identities=22% Similarity=0.497 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Q 007244 21 ILVIMVGAPGSGKSTFCEHVMRS 43 (611)
Q Consensus 21 ~LIvLvG~PGSGKST~A~~L~~~ 43 (611)
.-|+++|.+|+|||||.+++...
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45899999999999999999864
No 405
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=92.43 E-value=0.08 Score=48.45 Aligned_cols=25 Identities=28% Similarity=0.562 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRS 43 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~ 43 (611)
++.-|+++|.+|+|||||.+++...
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhC
Confidence 3456899999999999999999864
No 406
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.41 E-value=0.081 Score=47.40 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Q 007244 21 ILVIMVGAPGSGKSTFCEHVMRS 43 (611)
Q Consensus 21 ~LIvLvG~PGSGKST~A~~L~~~ 43 (611)
.-|+++|.+|+||||+.+++...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45899999999999999999753
No 407
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=92.41 E-value=0.085 Score=48.93 Aligned_cols=27 Identities=22% Similarity=0.391 Sum_probs=22.6
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRS 43 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~ 43 (611)
.....-|+|+|.+|+|||||.+++...
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 22 YNFVFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcC
Confidence 344567899999999999999999864
No 408
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=92.39 E-value=0.058 Score=56.94 Aligned_cols=27 Identities=26% Similarity=0.367 Sum_probs=22.8
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSS 44 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~ 44 (611)
....++.|+||+||||||+.+.++.-.
T Consensus 39 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 39 REGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 345789999999999999999987643
No 409
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=92.39 E-value=0.093 Score=47.62 Aligned_cols=25 Identities=20% Similarity=0.496 Sum_probs=21.4
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRS 43 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~ 43 (611)
+..-|+|+|.+|+|||||.+++...
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGG
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhC
Confidence 4556899999999999999998753
No 410
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=92.38 E-value=0.069 Score=55.00 Aligned_cols=27 Identities=19% Similarity=0.393 Sum_probs=23.3
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRS 43 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~ 43 (611)
-.+..+++|.|.||+|||||+..++..
T Consensus 65 l~~G~l~li~G~pG~GKTtl~l~ia~~ 91 (315)
T 3bh0_A 65 YKRRNFVLIAARPSMGKTAFALKQAKN 91 (315)
T ss_dssp BCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 345689999999999999999998754
No 411
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=92.38 E-value=0.087 Score=47.63 Aligned_cols=26 Identities=23% Similarity=0.299 Sum_probs=22.3
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRS 43 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~ 43 (611)
....-|+|+|.+|+|||||.+++...
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcC
Confidence 34567899999999999999999864
No 412
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=92.34 E-value=0.085 Score=47.39 Aligned_cols=25 Identities=16% Similarity=0.295 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRS 43 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~ 43 (611)
...-|+++|.+|+|||||.+++...
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3456899999999999999999864
No 413
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=92.33 E-value=0.054 Score=57.02 Aligned_cols=27 Identities=22% Similarity=0.370 Sum_probs=23.1
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSS 44 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~ 44 (611)
....++.|+||+||||||+.+.++.-.
T Consensus 24 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 24 ESGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp CTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCccHHHHHHHHHcCC
Confidence 455789999999999999999987643
No 414
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=92.33 E-value=0.073 Score=49.06 Aligned_cols=28 Identities=25% Similarity=0.316 Sum_probs=21.6
Q ss_pred cCCCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244 16 KKWKQILVIMVGAPGSGKSTFCEHVMRS 43 (611)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~ 43 (611)
...+..-|+|+|.+|+|||||.+++...
T Consensus 17 ~~~~~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 17 RGSQEHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp ----CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcC
Confidence 3445567999999999999999999754
No 415
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.30 E-value=0.092 Score=47.74 Aligned_cols=27 Identities=22% Similarity=0.284 Sum_probs=22.8
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRS 43 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~ 43 (611)
.....-|+|+|.+|+|||||.+++...
T Consensus 7 ~~~~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 7 YDVAFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHhC
Confidence 344567899999999999999999764
No 416
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=92.23 E-value=0.082 Score=47.28 Aligned_cols=21 Identities=29% Similarity=0.472 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 007244 23 VIMVGAPGSGKSTFCEHVMRS 43 (611)
Q Consensus 23 IvLvG~PGSGKST~A~~L~~~ 43 (611)
|+|+|.+|+||||+.+++...
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 799999999999999999764
No 417
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=92.23 E-value=0.072 Score=56.94 Aligned_cols=25 Identities=36% Similarity=0.420 Sum_probs=22.1
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHH
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMR 42 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~ 42 (611)
....++.|+||+||||||+.+.++.
T Consensus 45 ~~Ge~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 45 SPGQRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHT
T ss_pred cCCCEEEEECCCCChHHHHHHHHhC
Confidence 4567899999999999999999875
No 418
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=92.22 E-value=0.06 Score=54.32 Aligned_cols=25 Identities=32% Similarity=0.416 Sum_probs=22.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244 20 QILVIMVGAPGSGKSTFCEHVMRSS 44 (611)
Q Consensus 20 p~LIvLvG~PGSGKST~A~~L~~~~ 44 (611)
..++.|+|++||||||+.+.++.-.
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 6789999999999999999987654
No 419
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=92.21 E-value=0.074 Score=54.46 Aligned_cols=33 Identities=27% Similarity=0.469 Sum_probs=26.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEee
Q 007244 20 QILVIMVGAPGSGKSTFCEHVMRSSA---RPWARIC 52 (611)
Q Consensus 20 p~LIvLvG~PGSGKST~A~~L~~~~~---~~~~~Is 52 (611)
+.-|+|.|+||+|||++|+.+..... .+++.++
T Consensus 25 ~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~ 60 (304)
T 1ojl_A 25 DATVLIHGDSGTGKELVARALHACSARSDRPLVTLN 60 (304)
T ss_dssp TSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEE
T ss_pred CCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEe
Confidence 44588999999999999999988653 4565665
No 420
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=92.19 E-value=0.067 Score=56.17 Aligned_cols=36 Identities=22% Similarity=0.265 Sum_probs=27.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecc
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQD 54 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D 54 (611)
+..+++|.|+||||||||+.+++... +.....++.+
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E 98 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE 98 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 56799999999999999999987542 3344455543
No 421
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=92.18 E-value=0.089 Score=48.57 Aligned_cols=24 Identities=29% Similarity=0.571 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHH
Q 007244 20 QILVIMVGAPGSGKSTFCEHVMRS 43 (611)
Q Consensus 20 p~LIvLvG~PGSGKST~A~~L~~~ 43 (611)
+.-|+++|.+|+|||||++++...
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECcCCCCHHHHHHHHHcC
Confidence 457899999999999999999864
No 422
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=92.17 E-value=0.064 Score=56.94 Aligned_cols=27 Identities=22% Similarity=0.350 Sum_probs=22.9
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSS 44 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~ 44 (611)
....++.|+||+||||||+.+.++.-.
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 27 KDGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 355689999999999999999987643
No 423
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=92.17 E-value=0.11 Score=47.64 Aligned_cols=26 Identities=23% Similarity=0.411 Sum_probs=22.2
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRS 43 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~ 43 (611)
.+..-|+|+|.+|+|||||.+++...
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 34567899999999999999999864
No 424
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=92.17 E-value=0.068 Score=55.12 Aligned_cols=24 Identities=25% Similarity=0.606 Sum_probs=21.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHc
Q 007244 21 ILVIMVGAPGSGKSTFCEHVMRSS 44 (611)
Q Consensus 21 ~LIvLvG~PGSGKST~A~~L~~~~ 44 (611)
.+++|+|++||||||+.+.+....
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc
Confidence 478999999999999999998653
No 425
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=92.16 E-value=0.091 Score=47.81 Aligned_cols=26 Identities=19% Similarity=0.415 Sum_probs=22.1
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRS 43 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~ 43 (611)
..+.-|+|+|.+|+|||||.+++...
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcC
Confidence 34466899999999999999999864
No 426
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=92.14 E-value=0.079 Score=47.92 Aligned_cols=24 Identities=17% Similarity=0.443 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHH
Q 007244 20 QILVIMVGAPGSGKSTFCEHVMRS 43 (611)
Q Consensus 20 p~LIvLvG~PGSGKST~A~~L~~~ 43 (611)
+.-|+++|.+|+|||||.+++...
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 356899999999999999999853
No 427
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=92.14 E-value=0.12 Score=59.50 Aligned_cols=36 Identities=14% Similarity=0.184 Sum_probs=30.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh
Q 007244 21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (611)
Q Consensus 21 ~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i 56 (611)
.-++|.||||+|||++|+.+++.++.+++.++...+
T Consensus 489 ~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~ 524 (758)
T 1r6b_X 489 GSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEY 524 (758)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGC
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhh
Confidence 368999999999999999999998877777775444
No 428
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=91.98 E-value=0.078 Score=48.69 Aligned_cols=21 Identities=29% Similarity=0.449 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 007244 23 VIMVGAPGSGKSTFCEHVMRS 43 (611)
Q Consensus 23 IvLvG~PGSGKST~A~~L~~~ 43 (611)
|+++|.+|+|||||.+++...
T Consensus 4 i~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 789999999999999999753
No 429
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=91.91 E-value=0.1 Score=48.25 Aligned_cols=26 Identities=15% Similarity=0.303 Sum_probs=21.7
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRS 43 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~ 43 (611)
.+..-|+|+|.+|+|||||.+++...
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcC
Confidence 34467999999999999999999764
No 430
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=91.91 E-value=0.12 Score=49.64 Aligned_cols=27 Identities=26% Similarity=0.183 Sum_probs=23.2
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSS 44 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~ 44 (611)
.+..+++++|++||||||.+..++.++
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~ 32 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIRRA 32 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 345799999999999999998887765
No 431
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=91.90 E-value=0.36 Score=49.31 Aligned_cols=24 Identities=33% Similarity=0.544 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHH
Q 007244 20 QILVIMVGAPGSGKSTFCEHVMRS 43 (611)
Q Consensus 20 p~LIvLvG~PGSGKST~A~~L~~~ 43 (611)
...|+|+|.||+|||||.+++...
T Consensus 7 ~g~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 7 SGFVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346999999999999999999854
No 432
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=91.90 E-value=0.068 Score=57.28 Aligned_cols=25 Identities=20% Similarity=0.322 Sum_probs=21.5
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHH
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMR 42 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~ 42 (611)
....++.|+|+||||||||+..++-
T Consensus 176 ~~Gei~~I~G~sGsGKTTLl~~la~ 200 (400)
T 3lda_A 176 ETGSITELFGEFRTGKSQLCHTLAV 200 (400)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCChHHHHHHHHH
Confidence 3457999999999999999998764
No 433
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=91.89 E-value=0.081 Score=54.25 Aligned_cols=26 Identities=23% Similarity=0.248 Sum_probs=23.1
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRS 43 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~ 43 (611)
+...+++|.|+|||||||||.+++..
T Consensus 96 ~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 96 ESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34689999999999999999999865
No 434
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=91.88 E-value=0.13 Score=52.12 Aligned_cols=31 Identities=19% Similarity=0.219 Sum_probs=26.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeec
Q 007244 21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ 53 (611)
Q Consensus 21 ~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~ 53 (611)
.+++|.|++|+||||+++++.+..+ +..++.
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~ 62 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNERP--GILIDC 62 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEH
T ss_pred CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEe
Confidence 5899999999999999999998875 555553
No 435
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=91.87 E-value=0.11 Score=48.07 Aligned_cols=26 Identities=15% Similarity=0.302 Sum_probs=21.7
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRS 43 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~ 43 (611)
....-|+|+|.+|+|||||.+++...
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcC
Confidence 34556899999999999999999864
No 436
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=91.87 E-value=0.11 Score=47.83 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHH
Q 007244 20 QILVIMVGAPGSGKSTFCEHVMRS 43 (611)
Q Consensus 20 p~LIvLvG~PGSGKST~A~~L~~~ 43 (611)
..-|+|+|.+|+||||+.+++...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHcC
Confidence 346889999999999999999765
No 437
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=91.84 E-value=0.12 Score=55.83 Aligned_cols=38 Identities=29% Similarity=0.302 Sum_probs=29.4
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchh
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTI 56 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D~i 56 (611)
++.+|+++|++||||||++..|+..+ +.....++.|..
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~ 137 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQ 137 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeecccc
Confidence 67899999999999999999988654 334555666654
No 438
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=91.84 E-value=0.095 Score=48.56 Aligned_cols=28 Identities=29% Similarity=0.419 Sum_probs=21.4
Q ss_pred ccCCCcEEEEEEcCCCCcHHHHHHHHHH
Q 007244 15 EKKWKQILVIMVGAPGSGKSTFCEHVMR 42 (611)
Q Consensus 15 ~~~~~p~LIvLvG~PGSGKST~A~~L~~ 42 (611)
.....+.-|+|+|.+|+|||||.+++..
T Consensus 12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 12 GQSKTKLQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp ----CEEEEEEECCTTSCHHHHHHHHSC
T ss_pred cCCCCCcEEEEECCCCCCHHHHHHHHhc
Confidence 3455567899999999999999999864
No 439
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=91.81 E-value=0.055 Score=57.03 Aligned_cols=27 Identities=22% Similarity=0.291 Sum_probs=23.0
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSS 44 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~ 44 (611)
....++.|+||+||||||+.+.++.-.
T Consensus 29 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 29 ENGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 456789999999999999999987643
No 440
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=91.78 E-value=0.086 Score=54.02 Aligned_cols=25 Identities=24% Similarity=0.510 Sum_probs=22.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244 20 QILVIMVGAPGSGKSTFCEHVMRSSA 45 (611)
Q Consensus 20 p~LIvLvG~PGSGKST~A~~L~~~~~ 45 (611)
..++.|+|++||||||+.+.|. ...
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred CcEEEEECCCCCCHHHHHHHHH-Hhh
Confidence 4689999999999999999998 543
No 441
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.76 E-value=0.083 Score=48.28 Aligned_cols=25 Identities=24% Similarity=0.456 Sum_probs=21.7
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHH
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMR 42 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~ 42 (611)
.++.-|+++|++|+||||+.+++..
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 4567899999999999999998863
No 442
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=91.76 E-value=0.093 Score=47.87 Aligned_cols=24 Identities=21% Similarity=0.299 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHH
Q 007244 20 QILVIMVGAPGSGKSTFCEHVMRS 43 (611)
Q Consensus 20 p~LIvLvG~PGSGKST~A~~L~~~ 43 (611)
..-|+++|.+|+|||||.+++...
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHcC
Confidence 356899999999999999999753
No 443
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=91.75 E-value=0.11 Score=48.10 Aligned_cols=26 Identities=15% Similarity=0.429 Sum_probs=22.3
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRS 43 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~ 43 (611)
....-|+|+|.+|+||||+.+++...
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 45677999999999999999998754
No 444
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=91.70 E-value=0.48 Score=45.81 Aligned_cols=101 Identities=18% Similarity=0.089 Sum_probs=49.9
Q ss_pred ccccCCCcEEEEEEcCCCCcHHHHHHHHHHH---cCCCeEEeec--chhccCCCCcHHHH---------HHHHHHHHHCC
Q 007244 13 DEEKKWKQILVIMVGAPGSGKSTFCEHVMRS---SARPWARICQ--DTINKGKSGTKVQC---------LTSASSALKKG 78 (611)
Q Consensus 13 ~~~~~~~p~LIvLvG~PGSGKST~A~~L~~~---~~~~~~~Is~--D~i~~~~~~~~~~~---------~~~~~~~L~~G 78 (611)
......+..|.++.|++||||||..-+.... -+.....+.. |.-......++... ...+......-
T Consensus 13 ~~~~~~~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~D~R~~~~i~S~~g~~~~A~~~~~~~d~~~~~~~~ 92 (195)
T 1w4r_A 13 PRGSKTRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLLRDVAQEALGV 92 (195)
T ss_dssp ------CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETTCCCGGGSCCHHHHHHSEEEEESSGGGGHHHHHTC
T ss_pred ccCCCCceEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccccCccchhhhhhccCCcccceecCCHHHHHHhccCC
Confidence 3345677889999999999999644443332 2233434432 21111112222110 01122223344
Q ss_pred CcEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCC
Q 007244 79 KSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLP 114 (611)
Q Consensus 79 k~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p 114 (611)
..++||..-+-++ ...+++. ...+.++++.-|+.+
T Consensus 93 DvIlIDEaQFfk~-~ve~~~~L~~~gk~VI~~GL~~D 128 (195)
T 1w4r_A 93 AVIGIDEGQFFPD-IVEFCEAMANAGKTVIVAALDGT 128 (195)
T ss_dssp SEEEESSGGGCTT-HHHHHHHHHHTTCEEEEEEESBC
T ss_pred CEEEEEchhhhHH-HHHHHHHHHHCCCeEEEEecccc
Confidence 5678887555433 4444444 556777777778776
No 445
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.68 E-value=0.13 Score=47.74 Aligned_cols=25 Identities=28% Similarity=0.509 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRS 43 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~ 43 (611)
...-|+|+|.+|+|||||.+++...
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcC
Confidence 4456899999999999999999863
No 446
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=91.67 E-value=0.12 Score=47.13 Aligned_cols=24 Identities=42% Similarity=0.508 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHH
Q 007244 20 QILVIMVGAPGSGKSTFCEHVMRS 43 (611)
Q Consensus 20 p~LIvLvG~PGSGKST~A~~L~~~ 43 (611)
..-|+|+|.+|+|||||.+++...
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 456899999999999999999864
No 447
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=91.59 E-value=0.097 Score=47.82 Aligned_cols=25 Identities=20% Similarity=0.327 Sum_probs=21.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRS 43 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~ 43 (611)
+..-|+|+|.+|+|||||.+++...
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcC
Confidence 3557899999999999999999853
No 448
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=91.56 E-value=0.12 Score=47.97 Aligned_cols=27 Identities=26% Similarity=0.400 Sum_probs=22.6
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRS 43 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~ 43 (611)
.....-|+|+|.+|+|||||.+++...
T Consensus 19 ~~~~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 19 SKEEMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCccEEEEECCCCCCHHHHHHHHHcC
Confidence 334567899999999999999999864
No 449
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=91.55 E-value=0.13 Score=47.89 Aligned_cols=24 Identities=42% Similarity=0.508 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHH
Q 007244 20 QILVIMVGAPGSGKSTFCEHVMRS 43 (611)
Q Consensus 20 p~LIvLvG~PGSGKST~A~~L~~~ 43 (611)
..-|+|+|.+|+|||||.+++...
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 456899999999999999999864
No 450
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=91.54 E-value=0.053 Score=56.44 Aligned_cols=125 Identities=14% Similarity=0.102 Sum_probs=60.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCC--CeEEeec-chhccCCCC--------cHHHHHHHHHHHHHCCC-cEEEecCC
Q 007244 20 QILVIMVGAPGSGKSTFCEHVMRSSAR--PWARICQ-DTINKGKSG--------TKVQCLTSASSALKKGK-SVFLDRCN 87 (611)
Q Consensus 20 p~LIvLvG~PGSGKST~A~~L~~~~~~--~~~~Is~-D~i~~~~~~--------~~~~~~~~~~~~L~~Gk-~VIID~tn 87 (611)
..+++++|++||||||+.+.+...... ..+.++. +.+.-.... .-......+.++|.... .+|+|-.
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE~- 249 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGEL- 249 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECCC-
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcCC-
Confidence 458999999999999999999876542 2333331 221100000 00112244555666554 4667663
Q ss_pred CCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHh
Q 007244 88 LEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQ 146 (611)
Q Consensus 88 l~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~ 146 (611)
...+...-+..+...+.-+.++.=..+......|+..-..... .....+.+.++++..
T Consensus 250 ~~~e~~~~l~~~~~g~~tvi~t~H~~~~~~~~dri~~l~~g~~-~~~~~~~~~i~~~i~ 307 (330)
T 2pt7_A 250 RSSEAYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANMSSSNS-AARNIKFESLIEGFK 307 (330)
T ss_dssp CSTHHHHHHHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHTSG-GGTTSCHHHHHHHHH
T ss_pred ChHHHHHHHHHHhcCCCEEEEEEcccHHHHHhhhheehhcCCc-ccCCCCHHHHHHHHH
Confidence 2333333222233222212222224456666677643222100 001456666666655
No 451
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=91.51 E-value=0.14 Score=47.73 Aligned_cols=27 Identities=26% Similarity=0.349 Sum_probs=22.6
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRS 43 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~ 43 (611)
..+..-|+|+|.+|+|||||.+++...
T Consensus 17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 17 QGPELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp CCCEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 344567999999999999999998764
No 452
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=91.50 E-value=0.1 Score=47.98 Aligned_cols=27 Identities=19% Similarity=0.214 Sum_probs=21.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSSA 45 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~~ 45 (611)
...-|+|+|.+|+|||||.+.+...+.
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred cccEEEEECCCCCCHHHHHHHHHhhcc
Confidence 345689999999999999987766543
No 453
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=91.48 E-value=0.091 Score=55.54 Aligned_cols=24 Identities=25% Similarity=0.447 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHH
Q 007244 20 QILVIMVGAPGSGKSTFCEHVMRS 43 (611)
Q Consensus 20 p~LIvLvG~PGSGKST~A~~L~~~ 43 (611)
..+++|+|+||+||||+.+.|...
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHCC
T ss_pred CCEEEEECCCCccHHHHHHHHhcc
Confidence 458999999999999999999854
No 454
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=91.48 E-value=0.12 Score=48.22 Aligned_cols=27 Identities=22% Similarity=0.465 Sum_probs=22.4
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRS 43 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~ 43 (611)
.....-|+|+|.+|+|||||.+++...
T Consensus 20 ~~~~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 20 AIRELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp -CEEEEEEEEECTTSSHHHHHHHHHHC
T ss_pred cCCceEEEEECcCCCCHHHHHHHHhcC
Confidence 344567999999999999999999864
No 455
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=91.46 E-value=0.13 Score=47.56 Aligned_cols=25 Identities=20% Similarity=0.367 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRS 43 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~ 43 (611)
...-|+|+|.+|+|||||.+++...
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3456899999999999999999864
No 456
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=91.46 E-value=0.12 Score=49.19 Aligned_cols=27 Identities=15% Similarity=0.309 Sum_probs=22.2
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRS 43 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~ 43 (611)
.....-|+|+|.+|+|||||.+++...
T Consensus 25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 25 QNVKCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcC
Confidence 345567999999999999999999874
No 457
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=91.42 E-value=0.094 Score=49.40 Aligned_cols=24 Identities=33% Similarity=0.389 Sum_probs=20.4
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHH
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVM 41 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~ 41 (611)
....-|+|+|.+|+|||||.+++.
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTC
T ss_pred CcEEEEEEECCCCCCHHHHHHHHH
Confidence 345678999999999999999985
No 458
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.42 E-value=0.13 Score=48.03 Aligned_cols=26 Identities=19% Similarity=0.393 Sum_probs=22.0
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRS 43 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~ 43 (611)
....-|+|+|.+|+|||||.+++...
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 44567999999999999999999864
No 459
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=91.39 E-value=0.12 Score=52.82 Aligned_cols=37 Identities=30% Similarity=0.327 Sum_probs=28.1
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecch
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDT 55 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D~ 55 (611)
++.+|.++|++|+||||++..++..+ +.....++.|.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~ 136 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADT 136 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCc
Confidence 67889999999999999999987543 33444556554
No 460
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.39 E-value=0.11 Score=48.24 Aligned_cols=26 Identities=15% Similarity=0.347 Sum_probs=22.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSS 44 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~ 44 (611)
...-|+|+|.+|+|||||.+++....
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCC
Confidence 34568999999999999999998754
No 461
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=91.32 E-value=0.11 Score=47.88 Aligned_cols=24 Identities=21% Similarity=0.505 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHH
Q 007244 20 QILVIMVGAPGSGKSTFCEHVMRS 43 (611)
Q Consensus 20 p~LIvLvG~PGSGKST~A~~L~~~ 43 (611)
..-|+|+|.+|+|||||.+++...
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 467899999999999999999864
No 462
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=91.32 E-value=0.14 Score=47.48 Aligned_cols=27 Identities=22% Similarity=0.261 Sum_probs=22.5
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRS 43 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~ 43 (611)
.....-|+|+|.+|+|||||.+++...
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 18 GSYLFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp TCEEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcC
Confidence 344456899999999999999999864
No 463
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=91.30 E-value=0.14 Score=47.35 Aligned_cols=25 Identities=16% Similarity=0.345 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRS 43 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~ 43 (611)
...-|+|+|.+|+|||||.+++...
T Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcC
Confidence 3467899999999999999999864
No 464
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.29 E-value=0.13 Score=47.50 Aligned_cols=26 Identities=27% Similarity=0.351 Sum_probs=22.6
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRS 43 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~ 43 (611)
.+..-|+|+|.+|+||||+.+++...
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC
Confidence 45677999999999999999999853
No 465
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=91.28 E-value=0.13 Score=47.14 Aligned_cols=24 Identities=25% Similarity=0.566 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHH
Q 007244 20 QILVIMVGAPGSGKSTFCEHVMRS 43 (611)
Q Consensus 20 p~LIvLvG~PGSGKST~A~~L~~~ 43 (611)
+.+.+++|+.||||||+..++.-.
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~ 46 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVG 46 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999998644
No 466
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=91.28 E-value=0.097 Score=48.50 Aligned_cols=29 Identities=28% Similarity=0.422 Sum_probs=21.7
Q ss_pred cCCCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSS 44 (611)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~ 44 (611)
...+..-|+|+|.+|+|||||.+++....
T Consensus 17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 17 RGSKEVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp ----CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHhcCC
Confidence 34455679999999999999999987543
No 467
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=91.26 E-value=0.09 Score=56.86 Aligned_cols=26 Identities=27% Similarity=0.507 Sum_probs=21.4
Q ss_pred CCcEE--EEEEcCCCCcHHHHHHHHHHH
Q 007244 18 WKQIL--VIMVGAPGSGKSTFCEHVMRS 43 (611)
Q Consensus 18 ~~p~L--IvLvG~PGSGKST~A~~L~~~ 43 (611)
..+.+ +.|+|++|||||||.+.|+..
T Consensus 38 ~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 38 SQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp C-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred cCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 34556 999999999999999998754
No 468
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=91.21 E-value=0.11 Score=48.73 Aligned_cols=25 Identities=16% Similarity=0.364 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRS 43 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~ 43 (611)
+..-|+|+|.+|+|||||.+++...
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhC
Confidence 3456899999999999999999864
No 469
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=91.19 E-value=0.12 Score=47.13 Aligned_cols=25 Identities=20% Similarity=0.262 Sum_probs=21.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRS 43 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~ 43 (611)
+..-|+++|.+|+||||+.+++...
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 3456899999999999999999864
No 470
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=91.18 E-value=0.1 Score=53.41 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=21.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244 20 QILVIMVGAPGSGKSTFCEHVMRSS 44 (611)
Q Consensus 20 p~LIvLvG~PGSGKST~A~~L~~~~ 44 (611)
..++.|+|+|||||||+.+.+....
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred CCeEEEECCCCCcHHHHHHHhcccc
Confidence 4688999999999999999997644
No 471
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=91.13 E-value=0.083 Score=48.38 Aligned_cols=25 Identities=16% Similarity=0.317 Sum_probs=10.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRS 43 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~ 43 (611)
...-|+|+|.+|+|||||.+++...
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEEEECCCCC------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3456999999999999999998743
No 472
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=91.12 E-value=0.13 Score=50.14 Aligned_cols=25 Identities=28% Similarity=0.582 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRS 43 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~ 43 (611)
...-|+|+|.+|+||||+.+.+...
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHcCC
Confidence 4467899999999999999999864
No 473
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=91.11 E-value=0.11 Score=48.58 Aligned_cols=24 Identities=17% Similarity=0.402 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHH
Q 007244 20 QILVIMVGAPGSGKSTFCEHVMRS 43 (611)
Q Consensus 20 p~LIvLvG~PGSGKST~A~~L~~~ 43 (611)
..-|+|+|.+|+|||||.+++...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 345899999999999999999754
No 474
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=91.10 E-value=0.086 Score=55.68 Aligned_cols=28 Identities=29% Similarity=0.432 Sum_probs=22.6
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~ 45 (611)
.+..=|+|.|.+|||||||++++.--+.
T Consensus 31 ~~~~killlG~~~SGKST~~kq~~i~~~ 58 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQMRIIHG 58 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHS
T ss_pred cCccEEEEECCCCCcHHHHHHHHHHHhC
Confidence 4456789999999999999999854444
No 475
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=91.02 E-value=0.12 Score=48.18 Aligned_cols=26 Identities=19% Similarity=0.296 Sum_probs=20.7
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRS 43 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~ 43 (611)
.++.-|+++|.+|+||||+.+++...
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHS
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC
Confidence 34457899999999999999999863
No 476
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=90.99 E-value=0.14 Score=47.14 Aligned_cols=26 Identities=19% Similarity=0.383 Sum_probs=21.9
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRS 43 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~ 43 (611)
.+..-|+++|.+|+||||+.+++...
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 45667999999999999999998753
No 477
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=90.93 E-value=0.1 Score=54.44 Aligned_cols=26 Identities=23% Similarity=0.502 Sum_probs=22.4
Q ss_pred CcEEEEE--EcCCCCcHHHHHHHHHHHc
Q 007244 19 KQILVIM--VGAPGSGKSTFCEHVMRSS 44 (611)
Q Consensus 19 ~p~LIvL--vG~PGSGKST~A~~L~~~~ 44 (611)
.+..++| .|+||+||||+++.+++..
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~ 76 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRV 76 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence 4667888 9999999999999998765
No 478
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=90.93 E-value=0.15 Score=47.82 Aligned_cols=25 Identities=20% Similarity=0.357 Sum_probs=21.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRS 43 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~ 43 (611)
...-|+|+|.+|+|||||.+++...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcC
Confidence 3456899999999999999999764
No 479
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=90.92 E-value=0.079 Score=58.41 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcC
Q 007244 22 LVIMVGAPGSGKSTFCEHVMRSSA 45 (611)
Q Consensus 22 LIvLvG~PGSGKST~A~~L~~~~~ 45 (611)
-|+|.|+||+|||++|+.++...+
T Consensus 43 ~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 43 SVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp EEEEECCSSSSHHHHHHHGGGGBS
T ss_pred eeEeecCchHHHHHHHHHHHHHHh
Confidence 488999999999999999998774
No 480
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=90.89 E-value=0.15 Score=47.77 Aligned_cols=27 Identities=22% Similarity=0.432 Sum_probs=21.5
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRS 43 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~ 43 (611)
.....-|+|+|.+|+|||||.+++...
T Consensus 25 ~~~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 25 SQKAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp ---CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred cCCCeEEEEECcCCCCHHHHHHHHHhC
Confidence 344577999999999999999999764
No 481
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=90.86 E-value=0.098 Score=57.68 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=0.0
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHH
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVM 41 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~ 41 (611)
++..++.|+|++|||||||++.++
T Consensus 37 ~~Ge~~~l~G~nGsGKSTL~~~~l 60 (525)
T 1tf7_A 37 PIGRSTLVSGTSGTGKTLFSIQFL 60 (525)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHH
No 482
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=90.84 E-value=0.16 Score=47.30 Aligned_cols=26 Identities=19% Similarity=0.365 Sum_probs=21.8
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRS 43 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~ 43 (611)
....-|+|+|.+|+|||||.+++...
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhC
Confidence 34567999999999999999999864
No 483
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=90.81 E-value=0.14 Score=47.74 Aligned_cols=24 Identities=29% Similarity=0.585 Sum_probs=20.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHH
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMR 42 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~ 42 (611)
...-|+|+|.+|+|||||.+++..
T Consensus 25 ~~~ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 25 FKLQVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHCC
T ss_pred CceEEEEECCCCCCHHHHHHHHhc
Confidence 345689999999999999999864
No 484
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=90.74 E-value=0.15 Score=47.28 Aligned_cols=27 Identities=19% Similarity=0.298 Sum_probs=22.6
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244 17 KWKQILVIMVGAPGSGKSTFCEHVMRS 43 (611)
Q Consensus 17 ~~~p~LIvLvG~PGSGKST~A~~L~~~ 43 (611)
..+..-|+|+|.+|+|||||.+++...
T Consensus 20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 20 GKKALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceeeEEEEECcCCCCHHHHHHHHhcC
Confidence 344567999999999999999999874
No 485
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=90.73 E-value=0.089 Score=58.15 Aligned_cols=27 Identities=30% Similarity=0.385 Sum_probs=22.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRSSA 45 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~~~ 45 (611)
.+..++++|++||||||+.+.+.....
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~i~ 285 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMFIP 285 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 345699999999999999999987654
No 486
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=90.71 E-value=0.14 Score=48.42 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=20.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRS 43 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~ 43 (611)
+..-|+|+|.+|+||||+.+++...
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3456899999999999999999864
No 487
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.67 E-value=0.14 Score=48.16 Aligned_cols=26 Identities=19% Similarity=0.396 Sum_probs=21.3
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMRS 43 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~~ 43 (611)
....-|+|+|.+|+|||||.+++...
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhC
Confidence 34567899999999999999999854
No 488
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=90.66 E-value=0.11 Score=56.56 Aligned_cols=25 Identities=20% Similarity=0.396 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRS 43 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~ 43 (611)
...++.|+|++||||||+++.|+.-
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCc
Confidence 4568999999999999999998763
No 489
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=90.61 E-value=0.15 Score=50.19 Aligned_cols=25 Identities=32% Similarity=0.664 Sum_probs=21.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRS 43 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~ 43 (611)
.+.-|+|+|.+|+||||+.+++...
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHhCC
Confidence 4567999999999999999999854
No 490
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.58 E-value=0.14 Score=48.71 Aligned_cols=25 Identities=16% Similarity=0.448 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRS 43 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~ 43 (611)
...-|+|+|.+|+|||||.+++...
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 3457899999999999999999864
No 491
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=90.57 E-value=0.67 Score=49.66 Aligned_cols=22 Identities=36% Similarity=0.623 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 007244 22 LVIMVGAPGSGKSTFCEHVMRS 43 (611)
Q Consensus 22 LIvLvG~PGSGKST~A~~L~~~ 43 (611)
.|+|+|.||+||||+.+++...
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~ 26 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGE 26 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999998653
No 492
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=90.57 E-value=0.15 Score=46.47 Aligned_cols=25 Identities=20% Similarity=0.384 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRS 43 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~ 43 (611)
+..-|+|+|.+|+|||||.+++...
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3456899999999999999999864
No 493
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=90.53 E-value=0.15 Score=48.04 Aligned_cols=25 Identities=20% Similarity=0.283 Sum_probs=20.9
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHH
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMR 42 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~ 42 (611)
.++.-|+|+|++|+||||+.+++..
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhc
Confidence 3445689999999999999999863
No 494
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=90.48 E-value=0.17 Score=47.23 Aligned_cols=25 Identities=32% Similarity=0.428 Sum_probs=21.6
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHH
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMR 42 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~ 42 (611)
.+..-|+++|.+|+|||||.+++..
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CCccEEEEECCCCCCHHHHHHHHHh
Confidence 4456799999999999999999864
No 495
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=90.40 E-value=0.15 Score=54.89 Aligned_cols=24 Identities=33% Similarity=0.517 Sum_probs=21.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHH
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMR 42 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~ 42 (611)
.+.++.|+|++||||||+.+.+..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 445899999999999999999986
No 496
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.24 E-value=0.15 Score=48.10 Aligned_cols=25 Identities=16% Similarity=0.254 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244 19 KQILVIMVGAPGSGKSTFCEHVMRS 43 (611)
Q Consensus 19 ~p~LIvLvG~PGSGKST~A~~L~~~ 43 (611)
.+.-|+|+|.+|+|||||.+++...
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cCcEEEEECcCCCCHHHHHHHHhcC
Confidence 3456899999999999999999864
No 497
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=90.18 E-value=0.18 Score=47.45 Aligned_cols=25 Identities=20% Similarity=0.389 Sum_probs=21.4
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHH
Q 007244 18 WKQILVIMVGAPGSGKSTFCEHVMR 42 (611)
Q Consensus 18 ~~p~LIvLvG~PGSGKST~A~~L~~ 42 (611)
....-|+|+|.+|+|||||.+++..
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC
T ss_pred CcceEEEEECcCCCCHHHHHHHHHh
Confidence 4456789999999999999999874
No 498
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=90.16 E-value=0.13 Score=52.73 Aligned_cols=22 Identities=32% Similarity=0.573 Sum_probs=19.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHH
Q 007244 21 ILVIMVGAPGSGKSTFCEHVMR 42 (611)
Q Consensus 21 ~LIvLvG~PGSGKST~A~~L~~ 42 (611)
.-|+|+|++|+|||||.+.|+.
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 4469999999999999999864
No 499
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=90.15 E-value=0.15 Score=56.66 Aligned_cols=29 Identities=17% Similarity=0.245 Sum_probs=25.0
Q ss_pred cCCCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSS 44 (611)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~ 44 (611)
...+..++.|+|++||||||+.+.++..+
T Consensus 21 ~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 21 TPKNNTILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp CCCTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 55677899999999999999999987643
No 500
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=90.13 E-value=0.14 Score=57.53 Aligned_cols=25 Identities=28% Similarity=0.531 Sum_probs=22.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244 21 ILVIMVGAPGSGKSTFCEHVMRSSA 45 (611)
Q Consensus 21 ~LIvLvG~PGSGKST~A~~L~~~~~ 45 (611)
..++|+|+||+||||+++.++..++
T Consensus 61 ~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 61 RHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred CEEEEEeCCCCCHHHHHHHHhccCC
Confidence 4789999999999999999998765
Done!