BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>007246
MAHIHVHTLFSPTFCIPRSPLTSSRNHFAALSCTSPKTTASLSSEQDVLQAVVESDGKTL
PCVRTYENDLVRLSLFGAVGFDQALTAAAADGGQAANEHVVSGIPAMVVETVFPGPSGER
ATISTRLFLPASKVKEKAFKLRKSLSKDVLNGSSSRNILAMTFRQVVMHQLWSFELVLFR
PGTERNMEDLGNQREVPASFALTSSDERVISVLAEVVCLSALQSTESHFLDNSLRKTSSY
FFRWFQKPKRITSKDSSVVVYKLFEDEIVENAKTLLETFNSTKESIKPVKMRSKHLWWTP
SAHSKLEKIGGREFSIWTSENVPAYRLEIDVSRYNDVKLEGWRKSAENRWEILLTHSQMV
GLADILDMYYEDIFSLPNKQLSCSVVTNYTNLPSKKRDSSFLKILSVTLASGIFLVAISA
LGQRSSPHLHKGEKFSGELRSLASSEIWNALRQPVDAVKLEEMCVSIIKRIKDTFDWPGD
IMTEMSIGAWIGEIPNYLKLSHEDDSTSEGNLTAALEKIDPDIKSSMQDIASYQVVLSTE
GKIVGFQPTSRVGVNHWAASPLAKEMYGGRKLSPGLIEPSLKIHLPNEVVLIELLMSVNP
DSCFALARPIQ

High Scoring Gene Products

Symbol, full name Information P value
AT1G28530 protein from Arabidopsis thaliana 1.1e-167

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  007246
        (611 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2018728 - symbol:AT1G28530 "AT1G28530" species...  1631  1.1e-167  1


>TAIR|locus:2018728 [details] [associations]
            symbol:AT1G28530 "AT1G28530" species:3702 "Arabidopsis
            thaliana" [GO:0008150 "biological_process" evidence=ND] [GO:0009507
            "chloroplast" evidence=ISM] [GO:0009220 "pyrimidine ribonucleotide
            biosynthetic process" evidence=RCA] EMBL:CP002684 EMBL:BT005784
            EMBL:BT008607 EMBL:AK228671 IPI:IPI00528667 RefSeq:NP_174175.2
            UniGene:At.40870 PaxDb:Q84TH8 PRIDE:Q84TH8
            EnsemblPlants:AT1G28530.1 GeneID:839753 KEGG:ath:AT1G28530
            TAIR:At1g28530 eggNOG:NOG307483 HOGENOM:HOG000238720
            InParanoid:Q84TH8 OMA:LLTHSQM PhylomeDB:Q84TH8
            ProtClustDB:CLSN2680293 ArrayExpress:Q84TH8 Genevestigator:Q84TH8
            Uniprot:Q84TH8
        Length = 614

 Score = 1631 (579.2 bits), Expect = 1.1e-167, P = 1.1e-167
 Identities = 327/594 (55%), Positives = 421/594 (70%)

Query:    21 LTSSRNHFAALSCTSPKTTASLSSEQDVLQAVVESDGKTLPCVRTYENDLVRLSLFGAVG 80
             L   R+  + + C S  +    S+E+D+L+ V ESDGK LPCVRTYEN+  RLSL G V 
Sbjct:    26 LPQQRSSVSFVRCFSKNS----STEEDILRFVAESDGKALPCVRTYENNSARLSLVGTVA 81

Query:    81 FXXXXXXXXXXXXXXXNEHVVSGIPAMVVETVFPGPSGERATISTRLFLPASKVKEKAFK 140
             F               ++H+   +P MVVETVFPG S  +AT+STRLFLP  KVKE+A +
Sbjct:    82 FDQALTAAAADGGEAADDHLRENVPVMVVETVFPGGSDPKATVSTRLFLPTKKVKERAKR 141

Query:   141 LRKSLSKDVLNGSSSRNILAMTFRQVVMHQLWSFELVLFRPGTERNMEDLGNQRE-VPAS 199
             LR+SLS+D+ +G  S+NILAMTFRQVV+ QLW+F+LVLF PG ER M D  N RE V  S
Sbjct:   142 LRRSLSEDLSSGDLSKNILAMTFRQVVLRQLWNFQLVLFAPGAEREMGDFENPREQVSTS 201

Query:   200 FALTSSDERVISVLAEVVCLSALQSTESHFLDNSLRKTSSYFFRWFQKPKRITSKDSSVV 259
             F L+SSDERVISV+AEV+C+SALQSTE HFLD+ L K    F +W  K +RI S+D SVV
Sbjct:   202 FTLSSSDERVISVIAEVICISALQSTEKHFLDDYLGKAKFPFMKWLSKRRRIASRDCSVV 261

Query:   260 VYKLFEDEIVENAKTLLETFNSTKESIKPVKMRSKHLWWTPSAHSKLEKIGGREFSIWTS 319
             ++KLF+DE  +N K LLE + S KE+ K    + +  WW  SA+SKLEKIGG  FS W S
Sbjct:   262 LHKLFDDE--QNTKLLLEYYQSRKENFKLADTKQRSRWWDLSANSKLEKIGGPGFSSWAS 319

Query:   320 ENVPAYRLEIDVSRYNDVKLEGWRKSAENRWEILLTHSQMVGLADILDMYYEDIFSLPNK 379
             E +PAYRLE+D +   D+KLEGWRKS+EN+WE+LLTHSQMVGLA+ LD+Y+ED +SLP K
Sbjct:   320 EYLPAYRLEMDSTILADLKLEGWRKSSENKWEVLLTHSQMVGLAEALDIYFEDTYSLPRK 379

Query:   380 QLSCSVVTNYTNLPSKKRDSSFLKILSVTLASGIFLVAISALGQRSSPHLHKGE-KFSGE 438
             QL C V  NY NLP++K+  S LK +SVT+ASGIFL+A+SA  Q   P   K E K+ G+
Sbjct:   380 QLPCDVPGNYANLPNEKKGLSLLKFISVTMASGIFLLAVSAAAQFCLPQ--KSERKYPGK 437

Query:   439 LRSLASSEIWNALRQPVDAVKLEEMCVSIIKRIKDTFDWPGDIMTEMSIGAWIGEIPNYL 498
              + +  SE      Q  D+ +L+  C  ++ ++KD + W G+I  E SIGAWIGE+P+YL
Sbjct:   438 RQEILWSESELLSHQSSDSSELDSFCGLLVNKLKDAYSWVGEITLESSIGAWIGEVPDYL 497

Query:   499 KLSHEDDSTSEGNLTAA--LEKIDPDIKSSMQDIASYQVVLSTEGKIVGFQPTSRVGVNH 556
             K +    S  +  +T++  LE ++ D K+S QDIA+YQVVLS+EGKI+GFQPTSRV VNH
Sbjct:   498 KETSRAKSVEDHIVTSSSLLEILNEDAKASAQDIATYQVVLSSEGKIIGFQPTSRVAVNH 557

Query:   557 WAASPLAKEMYGGRKLSPGLIEPSLKIHLPNEVVLIELLMSVNPDSCFALARPI 610
             WAA+PLA+E+YGG+KL PGLIEP LK H P +VV++ELLMSVN D  FAL RP+
Sbjct:   558 WAANPLARELYGGKKLKPGLIEPGLKSHPPKKVVVLELLMSVNSDRPFALVRPL 611


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.131   0.382    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      611       596   0.00084  120 3  11 22  0.40    34
                                                     36  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  623 (66 KB)
  Total size of DFA:  326 KB (2166 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  52.34u 0.12s 52.46t   Elapsed:  00:00:02
  Total cpu time:  52.35u 0.12s 52.47t   Elapsed:  00:00:02
  Start:  Tue May 21 13:04:33 2013   End:  Tue May 21 13:04:35 2013

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