BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007246
(611 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P07589|FINC_BOVIN Fibronectin OS=Bos taurus GN=FN1 PE=1 SV=4
Length = 2478
Score = 39.3 bits (90), Expect = 0.097, Method: Composition-based stats.
Identities = 43/167 (25%), Positives = 63/167 (37%), Gaps = 19/167 (11%)
Query: 19 SPLTSSRNHFAALSCTSPKTTASLSSEQ-----DVLQAVVE---------SDGKTLPCVR 64
SP+T R A + P T ++ +Q + LQ VE +G++ P V+
Sbjct: 1659 SPVTGYRVTTAPKNGPGPSKTKTVGPDQTEMTIEGLQPTVEYVVSVYAQNQNGESQPLVQ 1718
Query: 65 TYENDLVRLS--LFGAVGFDQALTAAAADGGQAANEHVVSGIPAMVVETVFPGPSGERAT 122
T ++ R F V D A + GQ + V P + +FP P GE T
Sbjct: 1719 TAVTNIDRPKGLAFTDVDVDSIKIAWESPQGQVSRYRVTYSSPEDGIHELFPAPDGEEET 1778
Query: 123 ISTRLFLPASKVKEKAFKLRKSLSKDVLNGSSSRNILAMT---FRQV 166
+ P S+ L + L G+ S I A T F QV
Sbjct: 1779 AELQGLRPGSEYTVSVVALHDDMESQPLIGTQSTTIPAPTNLKFTQV 1825
>sp|P11276|FINC_MOUSE Fibronectin OS=Mus musculus GN=Fn1 PE=1 SV=4
Length = 2477
Score = 35.4 bits (80), Expect = 1.5, Method: Composition-based stats.
Identities = 43/167 (25%), Positives = 61/167 (36%), Gaps = 19/167 (11%)
Query: 19 SPLTSSRNHFAALSCTSPKTTASLSSEQ-----DVLQAVVE---------SDGKTLPCVR 64
SP+T R + P T + S +Q + LQ VE +G++ P V+
Sbjct: 1657 SPVTGYRVTTTPKNGLGPSKTKTASPDQTEMTIEGLQPTVEYVVSVYAQNRNGESQPLVQ 1716
Query: 65 TYENDLVRLS--LFGAVGFDQALTAAAADGGQAANEHVVSGIPAMVVETVFPGPSGERAT 122
T ++ R F V D A + GQ + V P + +FP P GE T
Sbjct: 1717 TAVTNIDRPKGLAFTDVDVDSIKIAWESPQGQVSRYRVTYSSPEDGIRELFPAPDGEDDT 1776
Query: 123 ISTRLFLPASKVKEKAFKLRKSLSKDVLNGSSSRNILAMT---FRQV 166
+ P S+ L + L G S I A T F QV
Sbjct: 1777 AELQGLRPGSEYTVSVVALHDDMESQPLIGIQSTAIPAPTNLKFSQV 1823
>sp|P04937|FINC_RAT Fibronectin OS=Rattus norvegicus GN=Fn1 PE=1 SV=2
Length = 2477
Score = 34.7 bits (78), Expect = 2.1, Method: Composition-based stats.
Identities = 42/167 (25%), Positives = 62/167 (37%), Gaps = 19/167 (11%)
Query: 19 SPLTSSRNHFAALSCTSPKTTASLSSEQ-----DVLQAVVE---------SDGKTLPCVR 64
SP+T R A + P + ++S +Q + LQ VE +G++ P V+
Sbjct: 1657 SPVTGYRVTTAPKNGLGPTKSQTVSPDQTEMTIEGLQPTVEYVVSVYAQNRNGESQPLVQ 1716
Query: 65 TYENDLVRLS--LFGAVGFDQALTAAAADGGQAANEHVVSGIPAMVVETVFPGPSGERAT 122
T ++ R F V D A + GQ + V P + +FP P G+ T
Sbjct: 1717 TAVTNIDRPKGLAFTDVDVDSIKIAWESPQGQVSRYRVTYSSPEDGIHELFPAPDGDEDT 1776
Query: 123 ISTRLFLPASKVKEKAFKLRKSLSKDVLNGSSSRNILAMT---FRQV 166
P S+ L + L G S I A T F QV
Sbjct: 1777 AELHGLRPGSEYTVSVVALHGGMESQPLIGVQSTAIPAPTNLKFTQV 1823
>sp|P02751|FINC_HUMAN Fibronectin OS=Homo sapiens GN=FN1 PE=1 SV=4
Length = 2386
Score = 34.7 bits (78), Expect = 2.1, Method: Composition-based stats.
Identities = 42/167 (25%), Positives = 60/167 (35%), Gaps = 19/167 (11%)
Query: 19 SPLTSSRNHFAALSCTSPKTTASLSSEQ-----DVLQAVVE---------SDGKTLPCVR 64
SP+T R + P T + +Q + LQ VE G++ P V+
Sbjct: 1567 SPVTGYRVTTTPKNGPGPTKTKTAGPDQTEMTIEGLQPTVEYVVSVYAQNPSGESQPLVQ 1626
Query: 65 TYENDLVRLS--LFGAVGFDQALTAAAADGGQAANEHVVSGIPAMVVETVFPGPSGERAT 122
T ++ R F V D A + GQ + V P + +FP P GE T
Sbjct: 1627 TAVTNIDRPKGLAFTDVDVDSIKIAWESPQGQVSRYRVTYSSPEDGIHELFPAPDGEEDT 1686
Query: 123 ISTRLFLPASKVKEKAFKLRKSLSKDVLNGSSSRNILAMT---FRQV 166
+ P S+ L + L G+ S I A T F QV
Sbjct: 1687 AELQGLRPGSEYTVSVVALHDDMESQPLIGTQSTAIPAPTDLKFTQV 1733
>sp|P28727|RDRP_PSVJ RNA-directed RNA polymerase 2a OS=Peanut stunt virus (strain J)
GN=ORF2a PE=3 SV=1
Length = 834
Score = 34.3 bits (77), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 73/187 (39%), Gaps = 24/187 (12%)
Query: 429 LHKGEKFSGELRSLASSEIWNALRQPVDAVKL----------------EEMCVSIIKRIK 472
L K +K GEL + EI N L PVD K M +S +R
Sbjct: 505 LSKFDKSQGELHLMIQEEILNLLGCPVDISKWWCDFHRYSYIKDKRAGVSMPISFQRRTG 564
Query: 473 DTFDWPGDIMTEMSIGAWIGEIPNYLKLSHEDDSTSEGNLTAALEKID--PDIKSSMQDI 530
D F + G+ + M++ +W + + ++ D + L +L I+ D +S+ ++
Sbjct: 565 DAFTYFGNTLVTMALFSWCYDTDQFDRMLFSGDDS----LAFSLNPIEGKSDWFTSLFNM 620
Query: 531 ASYQVVLSTEGKIVGFQPTSRVGVNHWAASPLAKEMYGGRKLSP--GLIEPSLKIHLPNE 588
+ + T F T +G PL + G K P GL E LK H +
Sbjct: 621 EAKNMDPPTPYICSKFLLTDELGNTFSVPDPLRELQRLGTKKIPDGGLDESYLKAHFMSF 680
Query: 589 VVLIELL 595
V ++ L
Sbjct: 681 VDRLKFL 687
>sp|P29035|RDRP_TAV RNA-directed RNA polymerase 2a OS=Tomato aspermy virus GN=ORF2a
PE=3 SV=1
Length = 828
Score = 33.5 bits (75), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 73/188 (38%), Gaps = 19/188 (10%)
Query: 429 LHKGEKFSGELRSLASSEIWNALRQPV----------------DAVKLEEMCVSIIKRIK 472
L K +K GEL + I N L PV D M +S +R
Sbjct: 522 LSKFDKSQGELHLMIQEGILNRLGCPVHISKWWCDFHRMSYIKDKRAGVSMPISFQRRTG 581
Query: 473 DTFDWPGDIMTEMSIGAWIGEIPNYLKLSHEDDSTSEGNLTAALEKIDPDIKSSMQDIAS 532
D F + G+ + MS+ AW + + KL D + ++ A + DP + +S+ ++ +
Sbjct: 582 DAFTYFGNTLVTMSMFAWCYDTSQFDKLIFSGDDSLGFSIKAPVG--DPSLFTSLFNMEA 639
Query: 533 YQVVLSTEGKIVGFQPTSRVGVNHWAASPLAK-EMYGGRKLSPGLIEPSLKIHLPNEVVL 591
+ S F T G PL + + G +K+ + SL H + V
Sbjct: 640 KVMEPSVPYICSKFLLTDDFGNTFSVPDPLREIQRLGSKKIPLDEDDRSLHAHFMSFVDR 699
Query: 592 IELLMSVN 599
++ L +N
Sbjct: 700 LKFLNHMN 707
>sp|A5WFV1|OBG_PSYWF GTPase obg OS=Psychrobacter sp. (strain PRwf-1) GN=obg PE=3 SV=1
Length = 402
Score = 33.1 bits (74), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Query: 429 LHKGEKFSGELRSLASSEIWNALRQPVDAVKLEEMCVSIIKRIKDTFDWPGDIM-TEMSI 487
L++ E+FS EL +L I N + Q DA +L E+C+ I+ + W G + T
Sbjct: 263 LNELERFSPELANLPQILILNKIDQVPDADELNELCLHIVAELG----WTGAVFRTSTLT 318
Query: 488 GAWIGEIPNYL 498
GA + ++ +L
Sbjct: 319 GAGVDDVKYHL 329
>sp|Q24323|SEM2A_DROME Semaphorin-2A OS=Drosophila melanogaster GN=Sema-2a PE=1 SV=2
Length = 724
Score = 32.7 bits (73), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 60/147 (40%), Gaps = 7/147 (4%)
Query: 191 GNQREVPASFALTSSDERVISVLAEVVCLSALQSTESHFLDNSLRKTSSYFFRWFQKPKR 250
GN +P ++ T+++ + V+ + L +T + L+ ++T Y +W KP
Sbjct: 199 GNPGGLPGLYSGTNAE---FTKADTVIFRTDLYNTSAKRLEYKFKRTLKYDSKWLDKPNF 255
Query: 251 ITSKDSSVVVYKLFEDEIVENAKTLLETFNSTKESIKPVKMRSKHLW---WTPSAHSKLE 307
+ S D VY F + VE ++ K + K+L W ++L
Sbjct: 256 VGSFDIGEYVYFFFRETAVEYINCGKAVYSRIARVCKK-DVGGKNLLAHNWATYLKARLN 314
Query: 308 KIGGREFSIWTSENVPAYRLEIDVSRY 334
EF + +E Y+L D SR+
Sbjct: 315 CSISGEFPFYFNEIQSVYQLPSDKSRF 341
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.131 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 215,018,272
Number of Sequences: 539616
Number of extensions: 8645095
Number of successful extensions: 22861
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 22855
Number of HSP's gapped (non-prelim): 18
length of query: 611
length of database: 191,569,459
effective HSP length: 123
effective length of query: 488
effective length of database: 125,196,691
effective search space: 61095985208
effective search space used: 61095985208
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)