Query 007246
Match_columns 611
No_of_seqs 16 out of 18
Neff 2.3
Searched_HMMs 46136
Date Thu Mar 28 20:57:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007246.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007246hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14233 DUF4335: Domain of un 91.0 0.35 7.6E-06 46.8 4.9 71 350-427 111-186 (189)
2 PF05800 GvpO: Gas vesicle syn 65.4 4.5 9.7E-05 36.7 2.1 24 529-552 70-93 (100)
3 COG4607 CeuA ABC-type enteroch 44.8 22 0.00047 38.1 3.4 64 532-608 196-259 (320)
4 PF00788 RA: Ras association ( 37.1 18 0.0004 29.1 1.2 45 152-196 26-73 (93)
5 cd05798 SIS_TAL_PGI SIS_TAL_PG 33.1 80 0.0017 29.7 4.8 58 48-112 18-86 (129)
6 cd05496 Bromo_WDR9_II Bromodom 29.6 54 0.0012 29.9 3.1 63 455-528 1-64 (119)
7 PF04221 RelB: RelB antitoxin; 26.3 1.1E+02 0.0023 26.0 4.0 49 121-178 2-50 (83)
8 PF14292 SusE: SusE outer memb 24.7 78 0.0017 27.9 3.1 46 323-371 63-111 (122)
9 cd05510 Bromo_SPT7_like Bromod 24.3 64 0.0014 29.0 2.5 56 457-523 5-62 (112)
10 PLN03021 Low-temperature-induc 22.9 45 0.00097 37.9 1.5 16 132-147 38-53 (619)
11 PHA02734 coat protein; Provisi 22.6 45 0.00097 32.2 1.3 24 360-383 13-36 (149)
12 PRK07107 inosine 5-monophospha 21.2 2.3E+02 0.005 31.6 6.5 83 42-147 179-283 (502)
13 smart00314 RA Ras association 20.4 93 0.002 25.7 2.6 46 151-196 24-71 (90)
14 cd01768 RA RA (Ras-associating 20.1 83 0.0018 25.8 2.2 46 151-196 21-69 (87)
No 1
>PF14233 DUF4335: Domain of unknown function (DUF4335)
Probab=90.98 E-value=0.35 Score=46.85 Aligned_cols=71 Identities=27% Similarity=0.309 Sum_probs=48.0
Q ss_pred eeeeehhhhhhhhhhHhhhhccccccCCCCcccccccccccCCCCccc-----CcchhHHHHHHhhhchhHHhhhhhhhc
Q 007246 350 WEILLTHSQMVGLADILDMYYEDIFSLPNKQLSCSVVTNYTNLPSKKR-----DSSFLKILSVTLASGIFLVAISALGQR 424 (611)
Q Consensus 350 wEVLLTHsQMv~LA~iLDmY~eD~ytLP~K~ls~~v~~n~~n~s~~kk-----~~s~lk~L~~~lasg~fl~aisa~~q~ 424 (611)
=+|-|+.+|+-+|++.||=|+.|.-|+|+.+... ..+++... .-..++. .+..+.|++-+++.+.+-|
T Consensus 111 ~~I~L~~~QLfDLv~aLDq~~~D~~~lp~l~~~~------~~~~~r~~~w~~~~~~~~~~-~~~~~~g~~sla~~a~~~~ 183 (189)
T PF14233_consen 111 LEIDLSTSQLFDLVEALDQFFADSQTLPNLSLQL------QPPSRRYPAWLRSAAPLLQR-LGPPTVGVSSLAIAASAFF 183 (189)
T ss_pred cEEEcChhHHHHHHHHHHHHhhcccccCCccccc------ccccccccccchhhhHHHHH-hhhhhHHHHHHHHHHHHhh
Confidence 6899999999999999999999999999887765 12222111 1122222 2233445666777777777
Q ss_pred ccc
Q 007246 425 SSP 427 (611)
Q Consensus 425 c~P 427 (611)
-+|
T Consensus 184 l~p 186 (189)
T PF14233_consen 184 LLP 186 (189)
T ss_pred cCC
Confidence 666
No 2
>PF05800 GvpO: Gas vesicle synthesis protein GvpO; InterPro: IPR008634 This family consists of archaeal GvpO proteins which are required for gas vesicle synthesis []. The family also contain related sequences from bacteria.; GO: 0031412 gas vesicle organization
Probab=65.39 E-value=4.5 Score=36.70 Aligned_cols=24 Identities=29% Similarity=0.637 Sum_probs=21.4
Q ss_pred ccceeEEEEeeCCeEeeeecCCcc
Q 007246 529 DIASYQVVLSTEGKIVGFQPTSRV 552 (611)
Q Consensus 529 dIASyQVV~S~eGKiVGFQPtsRv 552 (611)
=+|+|+|.|+.+|.++||.=+.|-
T Consensus 70 lla~YeV~lD~~Gel~~Y~R~~ry 93 (100)
T PF05800_consen 70 LLATYEVELDEDGELTGYRRLRRY 93 (100)
T ss_pred eeeeEEEEECCCCcEeeeehhhhh
Confidence 379999999999999999887773
No 3
>COG4607 CeuA ABC-type enterochelin transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=44.82 E-value=22 Score=38.08 Aligned_cols=64 Identities=31% Similarity=0.564 Sum_probs=54.0
Q ss_pred eeEEEEeeCCeEeeeecCCcccccccccChhHHhhhCCccCCCccccCCccccCCCceEEEeeeeecCCCccccccc
Q 007246 532 SYQVVLSTEGKIVGFQPTSRVGVNHWAASPLAKEMYGGRKLSPGLIEPSLKIHLPNEVVLIELLMSVNPDSCFALAR 608 (611)
Q Consensus 532 SyQVV~S~eGKiVGFQPtsRvaVNhWA~NPLa~eLY~GrkLSPg~~EP~Lki~~P~kVv~iELLmSvn~d~~fALar 608 (611)
.==|+|.++|||--|=|-||.+ | +|+-=.+.| +.+-++.+.--.+|=.|.+-..|||+-|.+=|
T Consensus 196 t~m~il~ngGkisafGp~SRfg---~--------ihd~~G~~p--vd~~~~~s~HGq~VSfEyI~e~NPD~lfViDR 259 (320)
T COG4607 196 TALVILVNGGKISAFGPSSRFG---W--------IHDDLGFTP--VDENIKNSNHGQPVSFEYIKEKNPDWLFVIDR 259 (320)
T ss_pred eeEEEEecCCeeeeecCCCcce---e--------eecccCCCc--ccccccccCCCCeecHHHHHhhCCCEEEEEeC
Confidence 4569999999999999999998 3 556556777 45777888889999999999999999997765
No 4
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=37.09 E-value=18 Score=29.11 Aligned_cols=45 Identities=18% Similarity=0.309 Sum_probs=34.6
Q ss_pred CCCcchHHHHHHHHHHH-HhhcceEE--EEecCCccccccccCCcccc
Q 007246 152 GSSSRNILAMTFRQVVM-HQLWSFEL--VLFRPGTERNMEDLGNQREV 196 (611)
Q Consensus 152 ~~~S~~iLAMtFrQVVl-~qL~nF~L--~vF~PGter~m~dl~~preV 196 (611)
.++.+.|..|+.++--+ ..--+|.| ..-.+|.||.++|-+.|-.+
T Consensus 26 ~tTa~evi~~~l~k~~l~~~~~~y~L~~~~~~~~~er~L~~~E~pl~i 73 (93)
T PF00788_consen 26 STTAREVIEMALEKFGLAEDPSDYCLVEVEESGGEERPLDDDECPLQI 73 (93)
T ss_dssp TSBHHHHHHHHHHHTTTSSSGGGEEEEEEECTTTEEEEETTTSBHHHH
T ss_pred CCCHHHHHHHHHHHhCCCCCCCCEEEEEEEcCCCEEEEcCCCCchHHH
Confidence 35566677777776666 66778999 67788999999999887664
No 5
>cd05798 SIS_TAL_PGI SIS_TAL_PGI: Transaldolase (TAL)/ Phosphoglucose isomerase (PGI). This group represents the SIS (Sugar ISomerase) PGI domain, of a multifunctional protein (TAL-PGI ) having both TAL and PGI activities. TAL_PGI contains an N-terminal TAL domain and a C-terminal PGI domain. TAL catalyzes the reversible conversion of sedoheptulose-7-phosphate (S7P) and glyceraldehyde-3-phosphate (G3P), to fructose-6-phosphate (F6P) and erythrose-4-phosphate (E4P). PGI catalyzes the reversible isomerization of F6P to glucose-6-phosphate (G6P). It has been suggested for Gluconobacter oxydans TAL_PGI that this enzyme generates E4P and G6P directly from S7P and G3P. G. oxydans TAL_PGI contributes to increased xylitol production from D-arabitol. As xylitol is an alternative natural sweetner to sucrose, the microbial conversion of D-arabitol to xylitol is of interest to food and pharmaceutical industries.
Probab=33.12 E-value=80 Score=29.69 Aligned_cols=58 Identities=24% Similarity=0.306 Sum_probs=39.2
Q ss_pred HHHHHHhcCCcc----ccee-------eeeccccceEEeccccchhHHHHHHhhcCchhhHHHHhcCCCeEEEEEe
Q 007246 48 VLQAVVESDGKT----LPCV-------RTYENDLVRLSLFGAVGFDQALTAAAADGGQAANEHVVSGIPAMVVETV 112 (611)
Q Consensus 48 ~l~~ia~sdgk~----lP~v-------Rtye~~larL~l~G~v~~~QA~tAAAADGG~~A~~hl~ag~~aMVvEt~ 112 (611)
.-|.+|||-||. +|++ |.|.+|+..+.| ++...+.++ . -.+..+|.++|.|.++++..
T Consensus 18 ~~QL~AES~GK~G~Gl~Pv~~hS~~qp~~~~~d~~~i~L----~~~~~~~~~-~--~at~~AL~~~g~P~~~i~~~ 86 (129)
T cd05798 18 LEQLIAESTGKEGKGIIPVDGEPLGDPAVYGDDRVFVYL----RLAGEADAD-Q--EEALLALEAAGHPVIRIDLD 86 (129)
T ss_pred HHHHHHHhcCCCCceeeecCCCCCCCCCCCCCCeEEEEE----echhhhHHH-H--HHHHHHHHhCCCCeEEEecC
Confidence 458999998774 7775 777777654444 444444332 2 24667788999999998764
No 6
>cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=29.58 E-value=54 Score=29.90 Aligned_cols=63 Identities=13% Similarity=0.117 Sum_probs=41.9
Q ss_pred CchHHHHHHHHHHHHhhhh-cCCCCCceeeeccccceecccchhhhccCCCCCCCccchhhhhhccChhhhhhhh
Q 007246 455 VDAVKLEEMCVSIIKRIKD-TFDWPGDIMTEMSIGAWIGEIPNYLKLSHEDDSTSEGNLTAALEKIDPDIKSSMQ 528 (611)
Q Consensus 455 ld~~klq~~Cvs~v~KiKD-sfgw~GdI~ve~~IGAWiGElP~ylk~s~e~~~~s~~t~s~~~~~ld~d~k~s~Q 528 (611)
+|.++++..|..|+.++.+ ..+||=-=-|+. .++|+|+..-....+ ++++-++|+...=.+.+
T Consensus 1 ~~~~~w~~~c~~il~~l~~~~~s~~F~~PVd~------~~~pdY~~iIk~PmD-----L~tIk~kL~~~~Y~~~~ 64 (119)
T cd05496 1 YDESDWKKQCKELVNLMWDCEDSEPFRQPVDL------LKYPDYRDIIDTPMD-----LGTVKETLFGGNYDDPM 64 (119)
T ss_pred CCHHHHHHHHHHHHHHHHhCCccccccCCCCh------hhcCcHHHHhCCccc-----HHHHHHHHhCCCCCCHH
Confidence 4788999999999999854 344544434443 269999986544444 77777777554444433
No 7
>PF04221 RelB: RelB antitoxin; InterPro: IPR007337 Plasmids may be maintained stably in bacterial populations through the action of addiction modules, in which a toxin and antidote are encoded in a cassette on the plasmid. In any daughter cell that lacks the plasmid, the toxin persists and is lethal after the antidote protein is depleted. Toxin/antitoxin pairs are also found on main chromosomes, and likely represent selfish DNA. Sequences in the seed for this alignment all were found adjacent to toxin genes. Several toxin/antitoxin pairs may occur in a single species. RelE and RelB form a toxin-antitoxin system; RelE represses translation, probably through binding ribosomes [, ]. RelB stably binds RelE, presumably deactivating it.; PDB: 2KC8_B 2K29_A.
Probab=26.26 E-value=1.1e+02 Score=26.00 Aligned_cols=49 Identities=31% Similarity=0.407 Sum_probs=33.0
Q ss_pred cceeEeeecchhhhHHHHHHHhhhcccccccCCCcchHHHHHHHHHHHHhhcceEEEE
Q 007246 121 ATISTRLFLPASKVKEKAFKLRKSLSKDVLNGSSSRNILAMTFRQVVMHQLWSFELVL 178 (611)
Q Consensus 121 ~tvSTRLfLpA~kVkEKA~klrksf~~d~fs~~~S~~iLAMtFrQVVl~qL~nF~L~v 178 (611)
++++.|+ -.++|++|..+=++.|-+.- ...-|-++|||.++=--|++..
T Consensus 2 a~i~~Ri---d~~lK~~a~~il~~~Glt~s------~ai~~fl~qiv~~~~iPF~~~~ 50 (83)
T PF04221_consen 2 ATINVRI---DEELKEEAEAILEELGLTLS------DAINMFLKQIVREGGIPFELSL 50 (83)
T ss_dssp EEEEEEE----HHHHHHHHHHHHHTT--HH------HHHHHHHHHHHHHSS-S----S
T ss_pred CeEEEEc---CHHHHHHHHHHHHHcCCCHH------HHHHHHHHHHHHhCCCCccccC
Confidence 4566665 57899999999999987654 5778999999999766666654
No 8
>PF14292 SusE: SusE outer membrane protein
Probab=24.66 E-value=78 Score=27.94 Aligned_cols=46 Identities=13% Similarity=0.119 Sum_probs=33.1
Q ss_pred cceeeeecccccccccccceeec--ccC-ceeeeehhhhhhhhhhHhhhhcc
Q 007246 323 PAYRLEIDVSRYNDVKLEGWRKS--AEN-RWEILLTHSQMVGLADILDMYYE 371 (611)
Q Consensus 323 PAYrLqId~~~~~d~K~eGw~ks--a~N-rwEVLLTHsQMv~LA~iLDmY~e 371 (611)
-.|.||||.+ +.+|+.=... .+| .=++-+||.+|-.++.-+.++-+
T Consensus 63 v~Y~lq~~~~---~~~F~~~~~~~~~~~~~~s~~~t~~eLN~~l~~~g~~~~ 111 (122)
T PF14292_consen 63 VTYTLQFDKK---GNDFSSPVEIVTTDNGSTSVSITVKELNSILLKLGLEPG 111 (122)
T ss_pred eEEEEEEecc---CCCccCcEEEEeecCcceeEEecHHHHHHHHHHcCCCCC
Confidence 3899999996 5566633322 333 67899999999999887776433
No 9
>cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily. SPT7 is a yeast protein that functions as a component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA, and SLIK. SAGA is involved in the RNA polymerase II-dependent transcriptional regulation of about 10% of all yeast genes. The SPT7 bromodomain has been shown to weakly interact with acetylated histone H3, but not H4. The human representative of this subfamily is cat eye syndrome critical region protein 2 (CECR2). Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=24.32 E-value=64 Score=29.05 Aligned_cols=56 Identities=16% Similarity=0.162 Sum_probs=39.1
Q ss_pred hHHHHHHHHHHHHhhhhc--CCCCCceeeeccccceecccchhhhccCCCCCCCccchhhhhhccChhh
Q 007246 457 AVKLEEMCVSIIKRIKDT--FDWPGDIMTEMSIGAWIGEIPNYLKLSHEDDSTSEGNLTAALEKIDPDI 523 (611)
Q Consensus 457 ~~klq~~Cvs~v~KiKDs--fgw~GdI~ve~~IGAWiGElP~ylk~s~e~~~~s~~t~s~~~~~ld~d~ 523 (611)
-.++.+.|..++++++.- ++|+=---|+. .++|+|+..=....+ ++++-.+|....
T Consensus 5 ~~~~~~~~~~il~~l~~~~~~s~~F~~pv~~------~~~pdY~~iIk~Pmd-----L~tI~~kl~~~~ 62 (112)
T cd05510 5 QEEFYESLDKVLNELKTYTEHSTPFLTKVSK------REAPDYYDIIKKPMD-----LGTMLKKLKNLQ 62 (112)
T ss_pred HHHHHHHHHHHHHHHHhcCccccchhcCCCh------hhcCCHHHHhcCccC-----HHHHHHHHhCCC
Confidence 468999999999999885 66665444543 379999986444444 777666664443
No 10
>PLN03021 Low-temperature-induced protein; Provisional
Probab=22.92 E-value=45 Score=37.92 Aligned_cols=16 Identities=63% Similarity=0.754 Sum_probs=14.6
Q ss_pred hhhHHHHHHHhhhccc
Q 007246 132 SKVKEKAFKLRKSLSK 147 (611)
Q Consensus 132 ~kVkEKA~klrksf~~ 147 (611)
+||||||+||++++.+
T Consensus 38 ~kvk~kakk~kn~ltk 53 (619)
T PLN03021 38 KKVKEKAKKIKNSLTK 53 (619)
T ss_pred HHHHHHHHHHHhHhhh
Confidence 7999999999999865
No 11
>PHA02734 coat protein; Provisional
Probab=22.55 E-value=45 Score=32.22 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=20.2
Q ss_pred hhhhhHhhhhccccccCCCCcccc
Q 007246 360 VGLADILDMYYEDIFSLPNKQLSC 383 (611)
Q Consensus 360 v~LA~iLDmY~eD~ytLP~K~ls~ 383 (611)
-++++|||+||+.++..|.-+|--
T Consensus 13 gg~~kiL~~F~~G~iGyPevsLRL 36 (149)
T PHA02734 13 GGAAKILDGFEAGQLGFPEVSLKL 36 (149)
T ss_pred HHHHHHHHHHHcCCCCCceeehhh
Confidence 378999999999999999766543
No 12
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=21.17 E-value=2.3e+02 Score=31.59 Aligned_cols=83 Identities=13% Similarity=0.111 Sum_probs=54.9
Q ss_pred CCcHHHHHHHHHhcCCcccceee------------------eec----cccceEEeccccchhHHHHHHhhcCchhhHHH
Q 007246 42 LSSEQDVLQAVVESDGKTLPCVR------------------TYE----NDLVRLSLFGAVGFDQALTAAAADGGQAANEH 99 (611)
Q Consensus 42 ~~te~~~l~~ia~sdgk~lP~vR------------------tye----~~larL~l~G~v~~~QA~tAAAADGG~~A~~h 99 (611)
..+-+|+++.+.+.+-..||++- .|- ...-||.+..++..+++ -+.|.+-
T Consensus 179 d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~~~~P~a~~d~~grL~V~~av~~~~~--------~~ra~~L 250 (502)
T PRK07107 179 GTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSHKENPLELLDSSKRYVVGAGINTRDY--------AERVPAL 250 (502)
T ss_pred CCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhcccChhhhhhhccCeeeeeccChhhH--------HHHHHHH
Confidence 45678899999999999999983 111 11345554444443332 3566678
Q ss_pred HhcCCCeEEEEEecCCCCCCCcceeEeeecchhhhHHHHHHHhhhccc
Q 007246 100 VVSGIPAMVVETVFPGPSGERATISTRLFLPASKVKEKAFKLRKSLSK 147 (611)
Q Consensus 100 l~ag~~aMVvEt~fPg~~~~~~tvSTRLfLpA~kVkEKA~klrksf~~ 147 (611)
+++|+|+.+|- .-||.+ ..+.+.-++||+.|+.
T Consensus 251 v~aGvd~i~vd-~a~g~~--------------~~~~~~i~~ir~~~~~ 283 (502)
T PRK07107 251 VEAGADVLCID-SSEGYS--------------EWQKRTLDWIREKYGD 283 (502)
T ss_pred HHhCCCeEeec-Cccccc--------------HHHHHHHHHHHHhCCC
Confidence 88999999875 334422 3347888899998874
No 13
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=20.43 E-value=93 Score=25.73 Aligned_cols=46 Identities=17% Similarity=0.278 Sum_probs=35.8
Q ss_pred cCCCcchHHHHHHHHHHHHh-hcceEEEEec-CCccccccccCCcccc
Q 007246 151 NGSSSRNILAMTFRQVVMHQ-LWSFELVLFR-PGTERNMEDLGNQREV 196 (611)
Q Consensus 151 s~~~S~~iLAMtFrQVVl~q-L~nF~L~vF~-PGter~m~dl~~preV 196 (611)
+.+++..|+.++++.--++. --+|.|.--. .|+||.+.+-+.|-++
T Consensus 24 ~~tTa~~Vi~~~l~k~~l~~~~~~y~L~e~~~~~~er~L~~~e~Pl~~ 71 (90)
T smart00314 24 SRTTARDVIQQLLEKFHLTDDPEEYVLVEVLPDGKERVLPDDENPLQL 71 (90)
T ss_pred CCCCHHHHHHHHHHHhCCCCCcccEEEEEEeCCcEEEEeCCCCcceEe
Confidence 34667777777777777766 4689988776 8999999999998765
No 14
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=20.07 E-value=83 Score=25.79 Aligned_cols=46 Identities=9% Similarity=0.135 Sum_probs=38.5
Q ss_pred cCCCcchHHHHHHHHHHHH-hhcceEEEEecCC--ccccccccCCcccc
Q 007246 151 NGSSSRNILAMTFRQVVMH-QLWSFELVLFRPG--TERNMEDLGNQREV 196 (611)
Q Consensus 151 s~~~S~~iLAMtFrQVVl~-qL~nF~L~vF~PG--ter~m~dl~~preV 196 (611)
+++++..|+.++++.--++ .--+|.|.--.++ .||.+.|-+.|-++
T Consensus 21 ~~~t~~~Vi~~~l~k~~l~~~~~~y~L~ev~~~~~~er~L~~~e~pl~~ 69 (87)
T cd01768 21 KDTTAQDVIQQLLKKFGLDDDPEDYALVEVLGDGGLERLLLPDECPLQI 69 (87)
T ss_pred CCCCHHHHHHHHHHHhCCcCCcccEEEEEEECCceEEEEeCCCCChHHH
Confidence 4577788888888888888 7779999988888 99999999988654
Done!