Query 007246
Match_columns 611
No_of_seqs 16 out of 18
Neff 2.3
Searched_HMMs 29240
Date Mon Mar 25 20:55:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007246.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007246hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4e8g_A Enolase, mandelate race 34.1 23 0.0008 35.5 3.2 28 262-295 162-189 (391)
2 2pge_A MENC; OSBS, NYSGXRC, PS 30.2 65 0.0022 31.8 5.5 75 264-374 162-243 (377)
3 4hyz_A Uncharacterized protein 27.0 31 0.0011 29.4 2.3 17 531-547 97-113 (114)
4 3s5s_A Mandelate racemase/muco 25.2 1.5E+02 0.005 29.8 7.1 80 260-374 140-225 (389)
5 2p8b_A Mandelate racemase/muco 22.6 1.3E+02 0.0046 29.2 6.1 75 264-374 141-221 (369)
6 1jpd_X L-Ala-D/L-Glu epimerase 22.0 82 0.0028 30.4 4.4 74 264-375 132-209 (324)
7 2ps2_A Putative mandelate race 21.9 77 0.0026 31.0 4.2 75 264-374 146-225 (371)
8 3faj_A ORF131, putative unchar 21.0 27 0.00093 32.3 0.8 23 360-382 33-55 (151)
9 3toy_A Mandelate racemase/muco 21.0 1.7E+02 0.0059 29.2 6.6 27 263-294 166-192 (383)
10 3ijl_A Muconate cycloisomerase 19.5 2E+02 0.0067 28.1 6.5 72 264-374 134-209 (338)
No 1
>4e8g_A Enolase, mandelate racemase/muconate lactonizing enzyme, N domain protein; putative racemase, nysgrc, structural genomics, PSI-biology; 2.00A {Paracoccus denitrificans}
Probab=34.11 E-value=23 Score=35.54 Aligned_cols=28 Identities=18% Similarity=0.118 Sum_probs=20.8
Q ss_pred ecchHHHHHHHHHHHhhhcccccccccccccccc
Q 007246 262 KLFEDEIVENAKTLLETFNSTKESIKPVKMRSKH 295 (611)
Q Consensus 262 kl~EdEIv~nak~lLe~~~l~k~s~k~vk~k~k~ 295 (611)
--+.+++++.|++.++ .+|+.+|+|-..
T Consensus 162 ~~~~e~~~~~a~~~~~------~G~~~~KlKvg~ 189 (391)
T 4e8g_A 162 IGQPDEIARIAAEKVA------EGFPRLQIKIGG 189 (391)
T ss_dssp SCCHHHHHHHHHHHHH------TTCSEEEEECCS
T ss_pred CCCHHHHHHHHHHHHH------cCCcEEEEcCCC
Confidence 3467889999988765 478888877553
No 2
>2pge_A MENC; OSBS, NYSGXRC, PSI-II, structural genomics, protein structure initiative; 1.60A {Desulfotalea psychrophila LSV54}
Probab=30.18 E-value=65 Score=31.79 Aligned_cols=75 Identities=12% Similarity=0.118 Sum_probs=43.2
Q ss_pred chHHHHHHHHHHHhhhcccccccccccccccccccC-ccchhhhhhhcCccccccccccc--cceeeeeccccccccccc
Q 007246 264 FEDEIVENAKTLLETFNSTKESIKPVKMRSKHLWWT-PSAHSKLEKIGGREFSIWTSENV--PAYRLEIDVSRYNDVKLE 340 (611)
Q Consensus 264 ~EdEIv~nak~lLe~~~l~k~s~k~vk~k~k~~WW~-~~a~ekLeKIGG~dfs~WasEyv--PAYrLqId~~~~~d~K~e 340 (611)
+.+++++.|+++++ .+|+.+|+|-... + .-..+++. .+.|-+ |..+|-+|++ +
T Consensus 162 ~~e~~~~~a~~~~~------~G~~~~K~Kvg~~--~~~~d~~~v~---------avr~~~g~~~~~l~vDaN-------~ 217 (377)
T 2pge_A 162 EAAFMQEQIEAKLA------EGYGCLKLKIGAI--DFDKECALLA---------GIRESFSPQQLEIRVDAN-------G 217 (377)
T ss_dssp CHHHHHHHHHHHHH------TTCSEEEEEC-----CHHHHHHHHH---------HHHHHSCTTTCEEEEECT-------T
T ss_pred CHHHHHHHHHHHHH------HhhhhheeecCCC--ChHHHHHHHH---------HHHHHcCCCCceEEEECC-------C
Confidence 45778888888774 4677788763210 0 00222222 233334 5678899985 3
Q ss_pred ceeecccCceeeeehhhhhhhhhhHhh---h-hccccc
Q 007246 341 GWRKSAENRWEILLTHSQMVGLADILD---M-YYEDIF 374 (611)
Q Consensus 341 Gw~ksa~NrwEVLLTHsQMv~LA~iLD---m-Y~eD~y 374 (611)
|| |-.|++++++.|+ + |+|||+
T Consensus 218 ~~------------~~~~a~~~~~~l~~~~i~~iEqP~ 243 (377)
T 2pge_A 218 AF------------SPANAPQRLKRLSQFHLHSIEQPI 243 (377)
T ss_dssp BB------------CTTTHHHHHHHHHTTCCSEEECCB
T ss_pred CC------------CHHHHHHHHHHHhcCCCcEEEccC
Confidence 44 2366666666664 3 788886
No 3
>4hyz_A Uncharacterized protein; PF13026 family protein, DUF3887, structural genomics, joint for structural genomics, JCSG; 2.25A {Ruminococcus gnavus}
Probab=26.98 E-value=31 Score=29.37 Aligned_cols=17 Identities=18% Similarity=0.489 Sum_probs=14.4
Q ss_pred ceeEEEEeeCCeEeeee
Q 007246 531 ASYQVVLSTEGKIVGFQ 547 (611)
Q Consensus 531 ASyQVV~S~eGKiVGFQ 547 (611)
.-|.+++..+|||+||.
T Consensus 97 ~~f~i~Fd~d~kl~G~~ 113 (114)
T 4hyz_A 97 VNYSLAYDEDMNLVSFT 113 (114)
T ss_dssp EEEEEEECTTSCEEEEE
T ss_pred eEEEEEECCCCcEeeeE
Confidence 35889999999999985
No 4
>3s5s_A Mandelate racemase/muconate lactonizing enzyme FA protein; PSI-biology, structural genomics, NEW YORK structural genomi research consortium; 2.40A {Sorangium cellulosum}
Probab=25.15 E-value=1.5e+02 Score=29.76 Aligned_cols=80 Identities=15% Similarity=0.152 Sum_probs=49.0
Q ss_pred EEecchHHHHHHHHHHHhhhcccccccccccccccccccCccchhhhhhhcCccccccccccccceeeeecccccccccc
Q 007246 260 VYKLFEDEIVENAKTLLETFNSTKESIKPVKMRSKHLWWTPSAHSKLEKIGGREFSIWTSENVPAYRLEIDVSRYNDVKL 339 (611)
Q Consensus 260 i~kl~EdEIv~nak~lLe~~~l~k~s~k~vk~k~k~~WW~~~a~ekLeKIGG~dfs~WasEyvPAYrLqId~~~~~d~K~ 339 (611)
+.--+.+++++.|++.++ .+|+.+|+|-...= .....+++.. +.|-+|.-+|-+|++
T Consensus 140 ~~~~~~e~~~~~a~~~~~------~G~~~iKlKvg~~~-~~~d~~~v~a---------vR~~~~~~~L~vDaN------- 196 (389)
T 3s5s_A 140 ITTGSPERAEEAARRAAA------MGFRALKVKVGGRL-AASDPARIEA---------IHAAAPGASLILDGN------- 196 (389)
T ss_dssp ECSSCSHHHHHHHHHHHH------HTCCEEEEECCGGG-TTTHHHHHHH---------HHHHCTTCEEEEECT-------
T ss_pred ecCCCHHHHHHHHHHHHH------cCCCeEEEEecCCC-hHHHHHHHHH---------HHHhCCCCeEEEECC-------
Confidence 344577899999998875 47888887754320 0012222222 234457778888887
Q ss_pred cceeecccCceeeeehhhhhhhhhhHh--h----hhccccc
Q 007246 340 EGWRKSAENRWEILLTHSQMVGLADIL--D----MYYEDIF 374 (611)
Q Consensus 340 eGw~ksa~NrwEVLLTHsQMv~LA~iL--D----mY~eD~y 374 (611)
+|| |-.|-..+++.| + .|+|+|.
T Consensus 197 ~~w------------~~~~A~~~~~~L~~~~~~i~~iEeP~ 225 (389)
T 3s5s_A 197 GGL------------TAGEALALVAHARRLGADVALLEQPV 225 (389)
T ss_dssp TCS------------CHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred CCC------------CHHHHHHHHHHHhhCCCCeEEEECCC
Confidence 444 345666677777 2 4889985
No 5
>2p8b_A Mandelate racemase/muconate lactonizing enzyme family protein; enolase superfamily, prediction of function; HET: NSK; 1.70A {Bacillus cereus atcc 14579} PDB: 2p88_A* 2p8c_A*
Probab=22.56 E-value=1.3e+02 Score=29.18 Aligned_cols=75 Identities=19% Similarity=0.355 Sum_probs=43.3
Q ss_pred chHHHHHHHHHHHhhhcccccccccccccccccccCccchhhhhhhcCccccccccccc-cceeeeecccccccccccce
Q 007246 264 FEDEIVENAKTLLETFNSTKESIKPVKMRSKHLWWTPSAHSKLEKIGGREFSIWTSENV-PAYRLEIDVSRYNDVKLEGW 342 (611)
Q Consensus 264 ~EdEIv~nak~lLe~~~l~k~s~k~vk~k~k~~WW~~~a~ekLeKIGG~dfs~WasEyv-PAYrLqId~~~~~d~K~eGw 342 (611)
+.++.++.|++.++ .+|+.+|+|-.+. .....+.++.+- |-+ |..+|-+|++ +||
T Consensus 141 ~~~~~~~~a~~~~~------~Gf~~iKik~g~~--~~~~~e~v~avr---------~a~g~~~~l~vDan-------~~~ 196 (369)
T 2p8b_A 141 DPENMAEEAASMIQ------KGYQSFKMKVGTN--VKEDVKRIEAVR---------ERVGNDIAIRVDVN-------QGW 196 (369)
T ss_dssp CHHHHHHHHHHHHH------TTCCEEEEECCSC--HHHHHHHHHHHH---------HHHCTTSEEEEECT-------TTT
T ss_pred ChHHHHHHHHHHHH------cCcCEEEEEeCCC--HHHHHHHHHHHH---------HHhCCCCeEEEECC-------CCC
Confidence 56788899998875 4788888776541 111234443321 112 3446677764 455
Q ss_pred eecccCceeeeehhhhhh-hhhhHhh----hhccccc
Q 007246 343 RKSAENRWEILLTHSQMV-GLADILD----MYYEDIF 374 (611)
Q Consensus 343 ~ksa~NrwEVLLTHsQMv-~LA~iLD----mY~eD~y 374 (611)
. -.+.+ ++++.|+ .|+|+|+
T Consensus 197 ~------------~~~a~~~~~~~l~~~~i~~iEqP~ 221 (369)
T 2p8b_A 197 K------------NSANTLTALRSLGHLNIDWIEQPV 221 (369)
T ss_dssp B------------SHHHHHHHHHTSTTSCCSCEECCB
T ss_pred C------------HHHHHHHHHHHHHhCCCcEEECCC
Confidence 2 25666 6666654 3778775
No 6
>1jpd_X L-Ala-D/L-Glu epimerase; enolase superfamily, muconate lactonizing enzyme subgroup, alpha/beta barrel, structural genomics, isomerase; 2.60A {Escherichia coli} SCOP: c.1.11.2 d.54.1.1
Probab=21.95 E-value=82 Score=30.39 Aligned_cols=74 Identities=20% Similarity=0.359 Sum_probs=44.8
Q ss_pred chHHHHHHHHHHHhhhcccccccccccccccccccCccchhhhhhhcCccccccccccccceeeeeccccccccccccee
Q 007246 264 FEDEIVENAKTLLETFNSTKESIKPVKMRSKHLWWTPSAHSKLEKIGGREFSIWTSENVPAYRLEIDVSRYNDVKLEGWR 343 (611)
Q Consensus 264 ~EdEIv~nak~lLe~~~l~k~s~k~vk~k~k~~WW~~~a~ekLeKIGG~dfs~WasEyvPAYrLqId~~~~~d~K~eGw~ 343 (611)
+.+++++.|++.++ .+|+.+|+|-... ...++++.+ .|-+|..+|-+|++ ++|
T Consensus 132 ~~e~~~~~a~~~~~------~G~~~~KiKvg~~----~d~~~v~av---------r~~~~~~~l~vDaN-------~~~- 184 (324)
T 1jpd_X 132 TPDQMANSASTLWQ------AGAKLLKVKLDNH----LISERMVAI---------RTAVPDATLIVDAN-------ESW- 184 (324)
T ss_dssp CHHHHHHHHHHHHH------TTCSEEEEECCSS----CHHHHHHHH---------HHHCTTSEEEEECT-------TCC-
T ss_pred CHHHHHHHHHHHHH------cCCCEEEEEeCCc----hHHHHHHHH---------HHhCCCCEEEEECc-------CCC-
Confidence 56788888888775 4677788764421 123333322 23347788999985 455
Q ss_pred ecccCceeeeehhhhhhhhhhHh---hh-hcccccc
Q 007246 344 KSAENRWEILLTHSQMVGLADIL---DM-YYEDIFS 375 (611)
Q Consensus 344 ksa~NrwEVLLTHsQMv~LA~iL---Dm-Y~eD~yt 375 (611)
|-.|.+++++.| ++ |+|+|..
T Consensus 185 -----------~~~~a~~~~~~l~~~~i~~iEqP~~ 209 (324)
T 1jpd_X 185 -----------RAEGLAARCQLLADLGVAMLEQPLP 209 (324)
T ss_dssp -----------CSTTHHHHHHHHHHTTCCEEECCSC
T ss_pred -----------CHHHHHHHHHHHHhCCCCEEECCCC
Confidence 224555555555 44 8899974
No 7
>2ps2_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9440A, enolase superfamily, PSI-2; 1.80A {Aspergillus oryzae RIB40}
Probab=21.89 E-value=77 Score=30.97 Aligned_cols=75 Identities=11% Similarity=0.090 Sum_probs=45.4
Q ss_pred chHHHHHHHHHHHhhhcccccccccccccccccccCccchhhhhhhcCccccccccccc-cceeeeecccccccccccce
Q 007246 264 FEDEIVENAKTLLETFNSTKESIKPVKMRSKHLWWTPSAHSKLEKIGGREFSIWTSENV-PAYRLEIDVSRYNDVKLEGW 342 (611)
Q Consensus 264 ~EdEIv~nak~lLe~~~l~k~s~k~vk~k~k~~WW~~~a~ekLeKIGG~dfs~WasEyv-PAYrLqId~~~~~d~K~eGw 342 (611)
+.++.++.|++..+ .+|+.+|+|-... .....+.++.+- |-+ |..+|-+|++ +||
T Consensus 146 ~~~~~~~~a~~~~~------~Gf~~iKik~g~~--~~~~~e~v~avr---------~a~g~~~~l~vDan-------~~~ 201 (371)
T 2ps2_A 146 EPEDMRARVAKYRA------KGYKGQSVKISGE--PVTDAKRITAAL---------ANQQPDEFFIVDAN-------GKL 201 (371)
T ss_dssp CHHHHHHHHHHHHT------TTCCEEEEECCSC--HHHHHHHHHHHT---------TTCCTTCEEEEECT-------TBC
T ss_pred CHHHHHHHHHHHHH------hChheEEeecCCC--HHHHHHHHHHHH---------HhcCCCCEEEEECC-------CCc
Confidence 57888899988864 4778888765531 011234444321 222 3457777774 455
Q ss_pred eecccCceeeeehhhhhhhhhhHh----hhhccccc
Q 007246 343 RKSAENRWEILLTHSQMVGLADIL----DMYYEDIF 374 (611)
Q Consensus 343 ~ksa~NrwEVLLTHsQMv~LA~iL----DmY~eD~y 374 (611)
|-.|+++++..| ++|+|+|+
T Consensus 202 ------------~~~~a~~~~~~l~~~~~i~iE~P~ 225 (371)
T 2ps2_A 202 ------------SVETALRLLRLLPHGLDFALEAPC 225 (371)
T ss_dssp ------------CHHHHHHHHHHSCTTCCCEEECCB
T ss_pred ------------CHHHHHHHHHHHHhhcCCcCcCCc
Confidence 347788888777 45777764
No 8
>3faj_A ORF131, putative uncharacterized protein; archaeal virus, extremophiles, bicaudavirus, structural PROT binding protein; 1.70A {Acidianus two-tailed virus}
Probab=20.98 E-value=27 Score=32.33 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=19.5
Q ss_pred hhhhhHhhhhccccccCCCCccc
Q 007246 360 VGLADILDMYYEDIFSLPNKQLS 382 (611)
Q Consensus 360 v~LA~iLDmY~eD~ytLP~K~ls 382 (611)
-++++||||||+.+|..|.-+|-
T Consensus 33 gg~ikiL~~F~~G~iGYPevsLR 55 (151)
T 3faj_A 33 GGAVKILDMFENGQLGYPEVTLK 55 (151)
T ss_dssp HHHHHHHHHHHTTCCEETHHHHH
T ss_pred HHHHHHHHHHHcCCCCCceeeeh
Confidence 37999999999999999975553
No 9
>3toy_A Mandelate racemase/muconate lactonizing enzyme FA protein; enolase, magnesium binding site, lyase; HET: P4C; 1.80A {Bradyrhizobium SP} PDB: 3tte_A*
Probab=20.98 E-value=1.7e+02 Score=29.16 Aligned_cols=27 Identities=11% Similarity=0.153 Sum_probs=20.3
Q ss_pred cchHHHHHHHHHHHhhhccccccccccccccc
Q 007246 263 LFEDEIVENAKTLLETFNSTKESIKPVKMRSK 294 (611)
Q Consensus 263 l~EdEIv~nak~lLe~~~l~k~s~k~vk~k~k 294 (611)
.+.+++++.|++.++.+ +|+.+|+|-.
T Consensus 166 ~~~e~~~~~a~~~~~~~-----G~~~~KlKvG 192 (383)
T 3toy_A 166 LDARDDERTLRTACDEH-----GFRAIKSKGG 192 (383)
T ss_dssp CCHHHHHHHHHHHHHTS-----CCCEEEEECC
T ss_pred CCHHHHHHHHHHHHHcc-----CCcEEEEecC
Confidence 47889999999988752 6777777643
No 10
>3ijl_A Muconate cycloisomerase; enolase superfamily, dipeptide epimerase, L-Pro-D-Glu, nonpr binding; HET: DGL; 1.50A {Bacteroides thetaiotaomicron} PDB: 3iji_A* 3ijq_A*
Probab=19.48 E-value=2e+02 Score=28.15 Aligned_cols=72 Identities=14% Similarity=0.251 Sum_probs=41.8
Q ss_pred chHHHHHHHHHHHhhhcccccccccccccccccccCccchhhhhhhcCccccccccccccceeeeeccccccccccccee
Q 007246 264 FEDEIVENAKTLLETFNSTKESIKPVKMRSKHLWWTPSAHSKLEKIGGREFSIWTSENVPAYRLEIDVSRYNDVKLEGWR 343 (611)
Q Consensus 264 ~EdEIv~nak~lLe~~~l~k~s~k~vk~k~k~~WW~~~a~ekLeKIGG~dfs~WasEyvPAYrLqId~~~~~d~K~eGw~ 343 (611)
+.+|+++.|++.++ +|+.+|+|-+.. ...++++.+ .|-++. +|-+|++ +||.
T Consensus 134 ~~e~~~~~a~~~~~-------g~~~~K~Kvg~~----~d~~~v~av---------R~~~~~-~l~vDaN-------~~~t 185 (338)
T 3ijl_A 134 TPDVVRAKTKECAG-------LFNILKVKLGRD----NDKEMIETI---------RSVTDL-PIAVDAN-------QGWK 185 (338)
T ss_dssp CHHHHHHHHHHHHT-------TCSSEEEECSSS----CHHHHHHHH---------HTTCCC-CEEEECT-------TCCC
T ss_pred CHHHHHHHHHHHHh-------cccEEEEecCcH----HHHHHHHHH---------HhhcCC-cEEEECc-------CCCC
Confidence 57788888888765 366677765442 244444444 233453 7888887 4553
Q ss_pred ecccCceeeeehhhhhhhhhhHhh----hhccccc
Q 007246 344 KSAENRWEILLTHSQMVGLADILD----MYYEDIF 374 (611)
Q Consensus 344 ksa~NrwEVLLTHsQMv~LA~iLD----mY~eD~y 374 (611)
+-.|-+++++.|+ +|+|+|.
T Consensus 186 -----------~~~~A~~~~~~l~~~~i~~iEeP~ 209 (338)
T 3ijl_A 186 -----------DRQYALDMIHWLKEKGIVMIEQPM 209 (338)
T ss_dssp -----------CHHHHHHHHHHHHHTTEEEEECCS
T ss_pred -----------CHHHHHHHHHHHhhCCCCEEECCC
Confidence 1234444554443 3788885
Done!