Query 007246
Match_columns 611
No_of_seqs 16 out of 18
Neff 2.3
Searched_HMMs 13730
Date Mon Mar 25 20:55:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007246.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/007246hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jpdx1 c.1.11.2 (X:114-321) L 36.9 15 0.0011 31.2 4.3 57 257-332 9-65 (208)
2 d1jpma1 c.1.11.2 (A:126-359) L 35.2 14 0.00099 31.5 3.7 26 262-293 13-38 (234)
3 d1t92a_ d.24.1.3 (A:) Pullulan 28.9 8.5 0.00062 31.2 1.2 25 354-378 10-34 (108)
4 d1wuea1 c.1.11.2 (A:1127-1367) 25.6 42 0.0031 28.3 5.2 50 264-332 16-65 (241)
5 d1wufa1 c.1.11.2 (A:1127-1370) 23.7 34 0.0025 29.1 4.2 76 264-374 16-91 (244)
6 d1tzza1 c.1.11.2 (A:1146-1392) 21.0 38 0.0027 29.1 4.0 74 264-375 20-101 (247)
7 d1sjda1 c.1.11.2 (A:126-367) N 19.7 29 0.0021 29.5 2.9 78 264-375 16-93 (242)
8 d2fmpa2 a.60.12.1 (A:92-148) D 18.5 7.2 0.00052 29.1 -1.2 17 351-372 38-54 (57)
9 d1rm6b2 d.145.1.3 (B:1-216) 4- 17.7 36 0.0026 30.3 3.2 51 309-361 31-83 (216)
10 d2bcqa2 a.60.12.1 (A:329-385) 16.0 11 0.00079 28.1 -0.7 28 341-373 28-55 (57)
No 1
>d1jpdx1 c.1.11.2 (X:114-321) L-Ala-D/L-Glu epimerase {Escherichia coli [TaxId: 562]}
Probab=36.89 E-value=15 Score=31.22 Aligned_cols=57 Identities=19% Similarity=0.235 Sum_probs=38.1
Q ss_pred cEEEEecchHHHHHHHHHHHhhhcccccccccccccccccccCccchhhhhhhcCccccccccccccceeeeeccc
Q 007246 257 SVVVYKLFEDEIVENAKTLLETFNSTKESIKPVKMRSKHLWWTPSAHSKLEKIGGREFSIWTSENVPAYRLEIDVS 332 (611)
Q Consensus 257 sV~i~kl~EdEIv~nak~lLe~~~l~k~s~k~vk~k~k~~WW~~~a~ekLeKIGG~dfs~WasEyvPAYrLqId~~ 332 (611)
++.|.-=+.+|+++.|+++++ .+|+.+|+|-...+ -.++++. +.|.+|--+|-+|++
T Consensus 9 ~~tv~~~tpe~~~~~a~~~~~------~G~~~~KiKvg~~~----d~~~i~~---------ir~~~~d~~l~vDaN 65 (208)
T d1jpdx1 9 AQTVVIGTPDQMANSASTLWQ------AGAKLLKVKLDNHL----ISERMVA---------IRTAVPDATLIVDAN 65 (208)
T ss_dssp CEEECSCCHHHHHHHHHHHHH------TTCSEEEEECCSSC----HHHHHHH---------HHHHCTTSEEEEECT
T ss_pred eeEcCCCCHHHHHHHHHHHHH------CCCCEEEEECCCCc----HHHHHHH---------HHHhccccEEEEecc
Confidence 345555588999999998776 58999998865432 3333333 345566556778876
No 2
>d1jpma1 c.1.11.2 (A:126-359) L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId: 1423]}
Probab=35.19 E-value=14 Score=31.50 Aligned_cols=26 Identities=15% Similarity=0.339 Sum_probs=20.1
Q ss_pred ecchHHHHHHHHHHHhhhcccccccccccccc
Q 007246 262 KLFEDEIVENAKTLLETFNSTKESIKPVKMRS 293 (611)
Q Consensus 262 kl~EdEIv~nak~lLe~~~l~k~s~k~vk~k~ 293 (611)
.=+.+|+++.|+++++ .+|+.+|+|-
T Consensus 13 ~~~pe~~~~~a~~~~~------~G~~~~Kiki 38 (234)
T d1jpma1 13 VNSPEEMAADAENYLK------QGFQTLKIKV 38 (234)
T ss_dssp CSCHHHHHHHHHHHHH------TTCCEEEEEC
T ss_pred CCCHHHHHHHHHHHHH------CCCCEEEEEC
Confidence 3356899999998875 4788899864
No 3
>d1t92a_ d.24.1.3 (A:) Pullulanase secretion protein PulG {Klebsiella pneumoniae [TaxId: 573]}
Probab=28.88 E-value=8.5 Score=31.24 Aligned_cols=25 Identities=36% Similarity=0.426 Sum_probs=23.2
Q ss_pred ehhhhhhhhhhHhhhhccccccCCC
Q 007246 354 LTHSQMVGLADILDMYYEDIFSLPN 378 (611)
Q Consensus 354 LTHsQMv~LA~iLDmY~eD~ytLP~ 378 (611)
-+++||..|...||||+-|.-..|.
T Consensus 10 ~a~~di~~i~~aL~~Y~~d~g~YP~ 34 (108)
T d1t92a_ 10 KVVSDLVALEGALDMYKLDNSRYPT 34 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 4789999999999999999999994
No 4
>d1wuea1 c.1.11.2 (A:1127-1367) N-acylamino acid racemase {Enterococcus faecalis [TaxId: 1351]}
Probab=25.56 E-value=42 Score=28.27 Aligned_cols=50 Identities=14% Similarity=0.239 Sum_probs=32.1
Q ss_pred chHHHHHHHHHHHhhhcccccccccccccccccccCccchhhhhhhcCccccccccccccceeeeeccc
Q 007246 264 FEDEIVENAKTLLETFNSTKESIKPVKMRSKHLWWTPSAHSKLEKIGGREFSIWTSENVPAYRLEIDVS 332 (611)
Q Consensus 264 ~EdEIv~nak~lLe~~~l~k~s~k~vk~k~k~~WW~~~a~ekLeKIGG~dfs~WasEyvPAYrLqId~~ 332 (611)
+-+|++++++..++ .+|+.+|+|-.. ..-.+++.+| .|-+|-.+|-+|++
T Consensus 16 ~~~~~~~~~~~~~~------~G~~~~Kikvg~----~~D~~~v~~i---------r~~~~d~~l~vDaN 65 (241)
T d1wuea1 16 DLPQLLKQVQLAVE------KGYQRVKLKIRP----GYDVEPVALI---------RQHFPNLPLMVDAN 65 (241)
T ss_dssp CHHHHHHHHHHHHH------TTCSCEEEECBT----TBSHHHHHHH---------HHHCTTSCEEEECT
T ss_pred CHHHHHHHHHHHHH------CCCCEEEEEcCc----cHHHHHHHHH---------HHhccccceeeccc
Confidence 34688888887765 488999988543 1234444433 44456667778887
No 5
>d1wufa1 c.1.11.2 (A:1127-1370) N-acylamino acid racemase {Listeria innocua [TaxId: 1642]}
Probab=23.66 E-value=34 Score=29.15 Aligned_cols=76 Identities=13% Similarity=0.188 Sum_probs=47.5
Q ss_pred chHHHHHHHHHHHhhhcccccccccccccccccccCccchhhhhhhcCccccccccccccceeeeeccccccccccccee
Q 007246 264 FEDEIVENAKTLLETFNSTKESIKPVKMRSKHLWWTPSAHSKLEKIGGREFSIWTSENVPAYRLEIDVSRYNDVKLEGWR 343 (611)
Q Consensus 264 ~EdEIv~nak~lLe~~~l~k~s~k~vk~k~k~~WW~~~a~ekLeKIGG~dfs~WasEyvPAYrLqId~~~~~d~K~eGw~ 343 (611)
+.+|+++.|++.++. +|+.+|+|-... ...++++++ .|.+|-.+|-+|++ +||-
T Consensus 16 ~~e~~~~~~~~~~~~------Gf~~~Kikvg~~----~D~~~v~~i---------r~~~~~~~l~vDaN-------~~~~ 69 (244)
T d1wufa1 16 NVETLLQLVNQYVDQ------GYERVKLKIAPN----KDIQFVEAV---------RKSFPKLSLMADAN-------SAYN 69 (244)
T ss_dssp CHHHHHHHHHHHHHH------TCCEEEEECBTT----BSHHHHHHH---------HTTCTTSEEEEECT-------TCCC
T ss_pred CHHHHHHHHHHHHHC------CCCEEEEEeCCc----HHHHHHHHH---------HHhccchhhhhhhh-------cccc
Confidence 678999999988764 889999886432 134444443 45667778888877 4663
Q ss_pred ecccCceeeeehhhhhhhhhhHhhhhccccc
Q 007246 344 KSAENRWEILLTHSQMVGLADILDMYYEDIF 374 (611)
Q Consensus 344 ksa~NrwEVLLTHsQMv~LA~iLDmY~eD~y 374 (611)
. .|.+ .+-.|.+.--.|+|+|+
T Consensus 70 ~-----~~a~----~~~~l~~~~~~wiEeP~ 91 (244)
T d1wufa1 70 R-----EDFL----LLKELDQYDLEMIEQPF 91 (244)
T ss_dssp G-----GGHH----HHHTTGGGTCSEEECCS
T ss_pred c-----hhhh----hhhcccccchhhhcCcc
Confidence 1 1111 12344444445779985
No 6
>d1tzza1 c.1.11.2 (A:1146-1392) Hypothetical protein Bll6730 {Bradyrhizobium japonicum [TaxId: 375]}
Probab=21.02 E-value=38 Score=29.05 Aligned_cols=74 Identities=18% Similarity=0.290 Sum_probs=44.6
Q ss_pred chHHHHHHHHHHHhhhcccccccccccccccccccCcc-chhhhhhh---cCccccccccccccceeeeecccccccccc
Q 007246 264 FEDEIVENAKTLLETFNSTKESIKPVKMRSKHLWWTPS-AHSKLEKI---GGREFSIWTSENVPAYRLEIDVSRYNDVKL 339 (611)
Q Consensus 264 ~EdEIv~nak~lLe~~~l~k~s~k~vk~k~k~~WW~~~-a~ekLeKI---GG~dfs~WasEyvPAYrLqId~~~~~d~K~ 339 (611)
+.+|+.+.++++++ .+|+.+|+|-. +.+.. ..++++.+ =|+| .+|-+|+.
T Consensus 20 ~~~~~~~~~~~~~~------~Gf~~~Kikvg--~~~~~~di~~v~~vr~~~g~~-----------~~l~vDan------- 73 (247)
T d1tzza1 20 GLSMLRGEMRGYLD------RGYNVVKMKIG--GAPIEEDRMRIEAVLEEIGKD-----------AQLAVDAN------- 73 (247)
T ss_dssp CHHHHHHHHHHHHT------TTCSEEEEECS--SSCHHHHHHHHHHHHHHHTTT-----------CEEEEECT-------
T ss_pred CHHHHHHHHHHHHH------cCCCEEEEECC--CCCHHHHHHHHHHHHHhccCC-----------ceEEeccc-------
Confidence 57899999998887 48999997643 22211 12233322 2344 36777776
Q ss_pred cceeecccCceeeeehhhhhhhhhhHhh----hhcccccc
Q 007246 340 EGWRKSAENRWEILLTHSQMVGLADILD----MYYEDIFS 375 (611)
Q Consensus 340 eGw~ksa~NrwEVLLTHsQMv~LA~iLD----mY~eD~yt 375 (611)
.+| |-.+-+++++.|+ .|+|||+.
T Consensus 74 --------~~~----~~~~Ai~~~~~l~~~~i~wiEeP~~ 101 (247)
T d1tzza1 74 --------GRF----NLETGIAYAKMLRDYPLFWYEEVGD 101 (247)
T ss_dssp --------TCC----CHHHHHHHHHHHTTSCCSEEECCSC
T ss_pred --------ccc----cchhHHHHHhhcchhhhhhhccccc
Confidence 334 3456666666665 35899873
No 7
>d1sjda1 c.1.11.2 (A:126-367) N-acylamino acid racemase {Amycolatopsis sp. [TaxId: 37632]}
Probab=19.67 E-value=29 Score=29.48 Aligned_cols=78 Identities=13% Similarity=0.193 Sum_probs=46.6
Q ss_pred chHHHHHHHHHHHhhhcccccccccccccccccccCccchhhhhhhcCccccccccccccceeeeeccccccccccccee
Q 007246 264 FEDEIVENAKTLLETFNSTKESIKPVKMRSKHLWWTPSAHSKLEKIGGREFSIWTSENVPAYRLEIDVSRYNDVKLEGWR 343 (611)
Q Consensus 264 ~EdEIv~nak~lLe~~~l~k~s~k~vk~k~k~~WW~~~a~ekLeKIGG~dfs~WasEyvPAYrLqId~~~~~d~K~eGw~ 343 (611)
+.+|+++.++..+ +.+|+.+|+|-.- .|.--..+++.+.-|+|+ +|-+|++ .+|.
T Consensus 16 ~~~~~~~~~~~~~------~~Gf~~~Kikvg~-~~Di~~i~~ir~~~g~~~-----------~l~vDaN-------~~~~ 70 (242)
T d1sjda1 16 TIPQLLDVVGGYL------DEGYVRIKLKIEP-GWDVEPVRAVRERFGDDV-----------LLQVDAN-------TAYT 70 (242)
T ss_dssp CHHHHHHHHHHHH------HHTCSEEEEECBT-TBSHHHHHHHHHHHCTTS-----------EEEEECT-------TCCC
T ss_pred CHHHHHHHHHHHH------HcCCCEEEEECCc-hhHHHHHHHHHHHhCCCe-----------eEeeccc-------cccc
Confidence 5788889888776 4588999988642 334334455555445554 7888886 4552
Q ss_pred ecccCceeeeehhhhhhhhhhHhhhhcccccc
Q 007246 344 KSAENRWEILLTHSQMVGLADILDMYYEDIFS 375 (611)
Q Consensus 344 ksa~NrwEVLLTHsQMv~LA~iLDmY~eD~yt 375 (611)
. .|. -+|..|.+.==.|+|+|+.
T Consensus 71 ~-----~~a----~~~~~l~~~~~~~iEeP~~ 93 (242)
T d1sjda1 71 L-----GDA----PQLARLDPFGLLLIEQPLE 93 (242)
T ss_dssp G-----GGH----HHHHTTGGGCCSEEECCSC
T ss_pred h-----hhh----hHHhhhhhhhhHHHHhhhh
Confidence 1 111 1344444433347799875
No 8
>d2fmpa2 a.60.12.1 (A:92-148) DNA polymerase beta {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.52 E-value=7.2 Score=29.11 Aligned_cols=17 Identities=47% Similarity=0.767 Sum_probs=14.0
Q ss_pred eeeehhhhhhhhhhHhhhhccc
Q 007246 351 EILLTHSQMVGLADILDMYYED 372 (611)
Q Consensus 351 EVLLTHsQMv~LA~iLDmY~eD 372 (611)
+.+|||.|.++|- ||+|
T Consensus 38 ~~~Lt~~Q~iGLk-----yy~D 54 (57)
T d2fmpa2 38 EDKLNHHQRIGLK-----YFGD 54 (57)
T ss_dssp GGGSCHHHHHHHH-----THHH
T ss_pred hhhCCHHHHHHHH-----HHHH
Confidence 4579999999995 7776
No 9
>d1rm6b2 d.145.1.3 (B:1-216) 4-hydroxybenzoyl-CoA reductase beta subunit HrcB, N-terminal domain {Thauera aromatica [TaxId: 59405]}
Probab=17.70 E-value=36 Score=30.31 Aligned_cols=51 Identities=12% Similarity=0.035 Sum_probs=41.3
Q ss_pred hcCccccccccccccceeeeecccccccccccceeecccCceee--eehhhhhhh
Q 007246 309 IGGREFSIWTSENVPAYRLEIDVSRYNDVKLEGWRKSAENRWEI--LLTHSQMVG 361 (611)
Q Consensus 309 IGG~dfs~WasEyvPAYrLqId~~~~~d~K~eGw~ksa~NrwEV--LLTHsQMv~ 361 (611)
.||.|+..|..+-.-.+..=||.+.+. .+.+.+..+|+.++| +.||+++.+
T Consensus 31 AGGTdL~~~~k~~~~~p~~lIdl~~I~--eL~~I~~~~dg~l~IGA~vT~~~l~~ 83 (216)
T d1rm6b2 31 GAGTDLLPNLRRGLGHPAALVDLTGID--GLATISTLADGSLRIGAGATLEAIAE 83 (216)
T ss_dssp SSCTTHHHHHHTTSCCCSEEEECTTST--TTTCEEECTTSCEEEETTCBHHHHHH
T ss_pred ECCccHHHHHhccccCccceechhhhh--hhhccccccCCcEEEeeeeehHHhhh
Confidence 599999999888887888889988554 366777778888888 688998865
No 10
>d2bcqa2 a.60.12.1 (A:329-385) DNA polymerase lambda {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.03 E-value=11 Score=28.12 Aligned_cols=28 Identities=36% Similarity=0.551 Sum_probs=18.8
Q ss_pred ceeecccCceeeeehhhhhhhhhhHhhhhcccc
Q 007246 341 GWRKSAENRWEILLTHSQMVGLADILDMYYEDI 373 (611)
Q Consensus 341 Gw~ksa~NrwEVLLTHsQMv~LA~iLDmY~eD~ 373 (611)
|++...+=|=..-|||.|.+||- ||+|.
T Consensus 28 Gi~ti~dLr~~~~Ln~~Q~iGLk-----yy~Dl 55 (57)
T d2bcqa2 28 GFRSLEDIRSQASLTTQQAIGLK-----HYSDF 55 (57)
T ss_dssp TCCSHHHHHHHCCCCHHHHHHHH-----TTTGG
T ss_pred CCCCHHHHHhcCCCCHHHHHhHH-----HHHHH
Confidence 45444444434459999999995 77773
Done!