Query 007247
Match_columns 611
No_of_seqs 278 out of 2993
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 20:57:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007247.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007247hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vue_A GBSS-I, granule-bound s 100.0 8.5E-83 2.9E-87 707.8 50.2 530 82-611 7-536 (536)
2 2qzs_A Glycogen synthase; glyc 100.0 9.8E-50 3.4E-54 437.9 43.6 463 85-589 1-479 (485)
3 1rzu_A Glycogen synthase 1; gl 100.0 6.1E-50 2.1E-54 439.6 41.1 464 85-591 1-480 (485)
4 3fro_A GLGA glycogen synthase; 100.0 5.3E-47 1.8E-51 408.7 40.0 423 83-588 1-432 (439)
5 3c48_A Predicted glycosyltrans 100.0 6.2E-41 2.1E-45 362.5 39.8 404 74-592 10-431 (438)
6 2r60_A Glycosyl transferase, g 100.0 2.9E-40 9.9E-45 364.2 38.8 411 84-592 7-465 (499)
7 3okp_A GDP-mannose-dependent a 100.0 4.3E-40 1.5E-44 349.9 35.2 367 82-590 2-383 (394)
8 3s28_A Sucrose synthase 1; gly 100.0 4E-39 1.4E-43 369.2 27.9 427 84-587 278-770 (816)
9 2jjm_A Glycosyl transferase, g 100.0 5.4E-38 1.9E-42 335.0 34.8 370 84-590 13-389 (394)
10 2gek_A Phosphatidylinositol ma 100.0 1.1E-37 3.8E-42 332.9 31.6 368 79-591 15-388 (406)
11 2x6q_A Trehalose-synthase TRET 100.0 2.1E-37 7.3E-42 332.9 32.5 363 82-587 38-415 (416)
12 2iw1_A Lipopolysaccharide core 100.0 2.7E-38 9.1E-43 333.9 22.1 363 85-588 1-373 (374)
13 2iuy_A Avigt4, glycosyltransfe 100.0 1.7E-37 5.7E-42 324.8 26.5 316 82-590 1-339 (342)
14 3oy2_A Glycosyltransferase B73 100.0 7.6E-37 2.6E-41 328.1 29.7 357 85-590 1-394 (413)
15 3nb0_A Glycogen [starch] synth 100.0 3.3E-36 1.1E-40 330.6 25.8 442 89-589 32-636 (725)
16 2x0d_A WSAF; GT4 family, trans 100.0 6.1E-33 2.1E-37 298.6 17.1 355 81-587 43-410 (413)
17 1f0k_A MURG, UDP-N-acetylgluco 100.0 4.9E-29 1.7E-33 262.5 26.1 338 84-587 6-358 (364)
18 2hy7_A Glucuronosyltransferase 100.0 4.5E-30 1.5E-34 275.8 17.2 202 308-588 170-381 (406)
19 1l5w_A Maltodextrin phosphoryl 100.0 4.4E-28 1.5E-32 270.4 24.3 371 196-588 265-732 (796)
20 2c4m_A Glycogen phosphorylase; 100.0 1.3E-27 4.3E-32 266.7 23.5 473 99-588 112-721 (796)
21 1uqt_A Alpha, alpha-trehalose- 100.0 8.8E-27 3E-31 254.4 29.7 294 227-586 123-454 (482)
22 3beo_A UDP-N-acetylglucosamine 100.0 2.8E-27 9.5E-32 249.9 24.6 224 309-584 142-374 (375)
23 2vsy_A XCC0866; transferase, g 99.9 3.3E-27 1.1E-31 264.0 22.1 214 316-593 328-566 (568)
24 1vgv_A UDP-N-acetylglucosamine 99.9 5.6E-27 1.9E-31 248.6 21.8 283 227-588 86-378 (384)
25 2bfw_A GLGA glycogen synthase; 99.9 1.6E-25 5.3E-30 215.5 21.1 184 352-566 1-193 (200)
26 3t5t_A Putative glycosyltransf 99.9 4E-25 1.4E-29 239.1 25.3 293 228-588 150-475 (496)
27 2gj4_A Glycogen phosphorylase, 99.9 4.4E-25 1.5E-29 247.1 18.8 338 227-588 320-756 (824)
28 3qhp_A Type 1 capsular polysac 99.9 2.3E-24 8E-29 201.0 18.0 160 402-578 2-166 (166)
29 1v4v_A UDP-N-acetylglucosamine 99.9 4.1E-22 1.4E-26 210.7 31.0 221 314-591 144-369 (376)
30 2f9f_A First mannosyl transfer 99.9 4.8E-21 1.6E-25 181.1 17.9 141 400-553 21-163 (177)
31 2xci_A KDO-transferase, 3-deox 99.8 2.6E-19 9E-24 189.8 24.2 186 309-552 146-346 (374)
32 3rhz_A GTF3, nucleotide sugar 99.8 3.7E-18 1.3E-22 177.9 26.5 220 257-579 101-329 (339)
33 3ot5_A UDP-N-acetylglucosamine 99.8 9E-18 3.1E-22 179.6 27.8 226 310-588 162-393 (403)
34 3dzc_A UDP-N-acetylglucosamine 99.8 5.2E-18 1.8E-22 181.1 23.5 229 310-584 159-395 (396)
35 3otg_A CALG1; calicheamicin, T 99.8 2.6E-18 8.9E-23 183.6 17.6 160 401-585 242-409 (412)
36 3s2u_A UDP-N-acetylglucosamine 99.7 9.3E-15 3.2E-19 154.2 28.2 163 403-587 182-355 (365)
37 2iyf_A OLED, oleandomycin glyc 99.6 6.7E-15 2.3E-19 158.3 21.9 161 401-587 232-402 (430)
38 4fzr_A SSFS6; structural genom 99.6 1.6E-15 5.5E-20 161.5 16.3 153 401-581 227-397 (398)
39 3tsa_A SPNG, NDP-rhamnosyltran 99.6 2.6E-14 9E-19 151.5 16.0 158 402-584 219-388 (391)
40 3oti_A CALG3; calicheamicin, T 99.5 2.6E-13 9E-18 144.4 20.6 154 401-583 232-396 (398)
41 3ia7_A CALG4; glycosysltransfe 99.5 1.5E-12 5E-17 138.1 25.7 157 401-585 231-399 (402)
42 3rsc_A CALG2; TDP, enediyne, s 99.5 2.7E-12 9.2E-17 137.1 23.0 157 401-585 247-414 (415)
43 4hwg_A UDP-N-acetylglucosamine 99.5 3.9E-13 1.3E-17 142.6 14.2 190 315-552 145-342 (385)
44 2p6p_A Glycosyl transferase; X 99.4 8.7E-12 3E-16 131.8 24.1 153 402-583 211-378 (384)
45 2yjn_A ERYCIII, glycosyltransf 99.2 3E-10 1E-14 122.5 20.4 154 402-583 268-434 (441)
46 1ygp_A Yeast glycogen phosphor 99.1 1.1E-08 3.9E-13 114.3 27.0 294 228-527 360-762 (879)
47 2iya_A OLEI, oleandomycin glyc 99.1 1.4E-08 4.9E-13 108.5 25.6 157 401-583 255-420 (424)
48 4amg_A Snogd; transferase, pol 99.0 1.6E-08 5.6E-13 106.9 20.6 153 402-581 238-397 (400)
49 3h4t_A Glycosyltransferase GTF 98.9 8.4E-08 2.9E-12 102.1 21.7 158 401-589 221-383 (404)
50 3q3e_A HMW1C-like glycosyltran 98.9 1.3E-08 4.6E-13 111.8 14.6 176 393-588 432-625 (631)
51 2o6l_A UDP-glucuronosyltransfe 98.8 3.2E-08 1.1E-12 91.9 12.0 123 401-552 21-154 (170)
52 1rrv_A Glycosyltransferase GTF 98.7 2.4E-06 8.3E-11 90.9 25.4 155 402-588 238-401 (416)
53 1iir_A Glycosyltransferase GTF 98.2 1E-05 3.5E-10 86.0 12.5 155 402-589 239-401 (415)
54 4gyw_A UDP-N-acetylglucosamine 97.5 0.0036 1.2E-07 71.3 19.3 182 391-589 514-708 (723)
55 3tov_A Glycosyl transferase fa 97.2 0.026 9.1E-07 58.2 21.0 111 389-507 174-287 (349)
56 1psw_A ADP-heptose LPS heptosy 96.5 0.023 7.8E-07 58.2 13.1 113 387-507 167-287 (348)
57 3hbm_A UDP-sugar hydrolase; PS 95.9 0.04 1.4E-06 55.1 10.7 94 403-508 159-252 (282)
58 3l7i_A Teichoic acid biosynthe 95.1 0.35 1.2E-05 54.9 16.4 231 313-587 475-718 (729)
59 2c1x_A UDP-glucose flavonoid 3 94.4 0.17 6E-06 54.0 10.9 131 401-552 271-412 (456)
60 3hbf_A Flavonoid 3-O-glucosylt 94.2 0.24 8.1E-06 52.9 11.4 135 402-552 274-414 (454)
61 2pq6_A UDP-glucuronosyl/UDP-gl 93.6 0.58 2E-05 50.2 13.3 133 402-552 296-439 (482)
62 2vch_A Hydroquinone glucosyltr 93.2 0.97 3.3E-05 48.5 14.1 136 401-552 268-429 (480)
63 2gt1_A Lipopolysaccharide hept 91.2 1.5 5E-05 44.1 11.9 139 403-552 180-322 (326)
64 2acv_A Triterpene UDP-glucosyl 89.5 6.6 0.00022 41.7 15.8 136 402-551 277-424 (463)
65 2jzc_A UDP-N-acetylglucosamine 86.4 1 3.6E-05 43.0 6.3 41 464-509 120-161 (224)
66 4gi5_A Quinone reductase; prot 78.8 1.8 6E-05 42.9 4.6 44 80-126 18-61 (280)
67 3grc_A Sensor protein, kinase; 76.2 29 0.00099 28.9 11.5 109 431-552 6-127 (140)
68 3kht_A Response regulator; PSI 73.2 40 0.0014 28.2 12.0 111 431-552 5-128 (144)
69 3jte_A Response regulator rece 72.9 38 0.0013 28.3 11.4 108 432-552 4-123 (143)
70 1iir_A Glycosyltransferase GTF 71.9 2.5 8.5E-05 44.0 3.9 37 85-127 1-37 (415)
71 4b4o_A Epimerase family protei 70.5 2.4 8.3E-05 41.7 3.3 27 101-127 7-33 (298)
72 2hy5_A Putative sulfurtransfer 69.3 4.9 0.00017 34.5 4.6 40 85-127 1-41 (130)
73 1k68_A Phytochrome response re 68.4 48 0.0016 27.2 11.8 110 432-552 3-131 (140)
74 2zay_A Response regulator rece 68.4 51 0.0018 27.5 11.6 109 431-552 8-128 (147)
75 3heb_A Response regulator rece 68.3 41 0.0014 28.5 10.7 111 431-552 4-135 (152)
76 2d1p_A TUSD, hypothetical UPF0 68.0 5.4 0.00018 34.9 4.6 41 84-127 12-53 (140)
77 4e7p_A Response regulator; DNA 66.8 57 0.002 27.5 11.3 111 431-552 20-140 (150)
78 4f3y_A DHPR, dihydrodipicolina 62.9 8 0.00027 38.0 5.2 44 470-513 67-110 (272)
79 3gt7_A Sensor protein; structu 60.5 78 0.0027 26.8 11.5 109 431-552 7-127 (154)
80 2pq6_A UDP-glucuronosyl/UDP-gl 60.4 6.4 0.00022 41.9 4.4 40 82-127 6-45 (482)
81 3to5_A CHEY homolog; alpha(5)b 60.3 67 0.0023 27.4 10.3 112 428-551 9-132 (134)
82 2pln_A HP1043, response regula 59.9 40 0.0014 27.9 8.8 106 431-552 18-133 (137)
83 3e8x_A Putative NAD-dependent 59.7 5.8 0.0002 37.4 3.5 39 79-127 16-54 (236)
84 3cg4_A Response regulator rece 59.4 74 0.0025 26.2 12.6 110 430-552 6-127 (142)
85 2qsj_A DNA-binding response re 58.9 66 0.0023 27.1 10.2 111 431-552 3-124 (154)
86 3cnb_A DNA-binding response re 58.6 76 0.0026 26.1 10.8 111 431-553 8-131 (143)
87 3ty2_A 5'-nucleotidase SURE; s 55.6 7.3 0.00025 37.8 3.4 41 82-130 9-49 (261)
88 1i3c_A Response regulator RCP1 55.4 92 0.0032 26.1 12.0 111 431-552 8-137 (149)
89 3hzh_A Chemotaxis response reg 55.2 92 0.0032 26.4 10.6 108 432-551 37-156 (157)
90 1hdo_A Biliverdin IX beta redu 54.9 9 0.00031 34.8 3.9 35 83-127 2-36 (206)
91 3mc3_A DSRE/DSRF-like family p 54.4 13 0.00045 32.0 4.6 42 83-127 14-55 (134)
92 3f6c_A Positive transcription 54.1 87 0.003 25.4 10.5 109 432-552 2-120 (134)
93 3eul_A Possible nitrate/nitrit 54.1 97 0.0033 26.0 11.3 111 430-552 14-135 (152)
94 3ijp_A DHPR, dihydrodipicolina 53.7 9.5 0.00032 37.7 3.9 43 470-512 82-124 (288)
95 2vch_A Hydroquinone glucosyltr 51.8 8.7 0.0003 40.9 3.6 40 83-128 5-45 (480)
96 2a5l_A Trp repressor binding p 51.6 14 0.00046 33.8 4.5 41 82-127 3-43 (200)
97 3n53_A Response regulator rece 51.6 1E+02 0.0034 25.4 10.3 107 432-552 4-122 (140)
98 2hy5_B Intracellular sulfur ox 50.8 12 0.00041 32.5 3.7 42 83-127 3-45 (136)
99 1jbe_A Chemotaxis protein CHEY 50.3 96 0.0033 24.9 9.5 109 431-552 4-125 (128)
100 1jx7_A Hypothetical protein YC 50.2 14 0.00047 30.6 3.9 40 85-127 2-43 (117)
101 3ew7_A LMO0794 protein; Q8Y8U8 49.8 10 0.00035 34.9 3.4 33 85-127 1-33 (221)
102 3m6m_D Sensory/regulatory prot 49.4 1E+02 0.0035 25.7 9.7 109 431-552 14-136 (143)
103 3h5i_A Response regulator/sens 49.1 1.1E+02 0.0038 25.2 13.1 109 431-552 5-124 (140)
104 3cg0_A Response regulator rece 48.8 1.1E+02 0.0037 25.0 10.1 111 430-552 8-128 (140)
105 2qr3_A Two-component system re 48.3 74 0.0025 26.1 8.5 108 432-552 4-126 (140)
106 3h2s_A Putative NADH-flavin re 48.3 11 0.00038 34.8 3.4 33 85-127 1-33 (224)
107 3hdg_A Uncharacterized protein 48.1 1.1E+02 0.0038 24.9 11.1 109 431-552 7-125 (137)
108 3kcn_A Adenylate cyclase homol 48.1 1.2E+02 0.0041 25.3 13.1 108 431-552 4-123 (151)
109 3cfy_A Putative LUXO repressor 47.3 1.2E+02 0.004 25.0 10.4 107 433-552 6-122 (137)
110 3kb6_A D-lactate dehydrogenase 46.9 40 0.0014 33.9 7.5 44 470-513 188-236 (334)
111 3hv2_A Response regulator/HD d 46.9 1.3E+02 0.0044 25.2 10.9 109 431-552 14-133 (153)
112 2qzj_A Two-component response 46.6 88 0.003 25.8 8.8 109 431-552 4-121 (136)
113 3auf_A Glycinamide ribonucleot 46.6 44 0.0015 31.7 7.3 35 84-127 22-58 (229)
114 3h1g_A Chemotaxis protein CHEY 46.2 1.2E+02 0.004 24.6 11.7 109 432-552 6-127 (129)
115 2j48_A Two-component sensor ki 46.2 66 0.0022 25.2 7.6 107 432-551 2-117 (119)
116 1rcu_A Conserved hypothetical 46.1 85 0.0029 28.9 8.9 129 415-549 42-192 (195)
117 1wcv_1 SOJ, segregation protei 45.8 14 0.0005 35.3 3.8 39 83-127 4-44 (257)
118 4hb9_A Similarities with proba 45.3 12 0.00041 38.1 3.3 30 84-124 1-30 (412)
119 3hly_A Flavodoxin-like domain; 45.0 18 0.00062 32.0 4.1 38 85-127 1-38 (161)
120 3dhn_A NAD-dependent epimerase 44.6 15 0.0005 34.1 3.6 33 85-127 5-37 (227)
121 3hdv_A Response regulator; PSI 44.6 1.3E+02 0.0043 24.5 10.8 109 431-552 7-127 (136)
122 1qkk_A DCTD, C4-dicarboxylate 44.0 1.4E+02 0.0049 25.0 11.5 108 432-552 4-121 (155)
123 3tem_A Ribosyldihydronicotinam 44.0 17 0.00058 34.5 3.9 40 84-127 1-41 (228)
124 1p9l_A Dihydrodipicolinate red 44.0 50 0.0017 31.6 7.3 78 433-513 2-82 (245)
125 1kjn_A MTH0777; hypotethical p 43.4 27 0.00094 30.6 4.7 42 81-126 3-44 (157)
126 3vnd_A TSA, tryptophan synthas 43.4 2.3E+02 0.0079 27.2 12.6 118 402-525 96-235 (267)
127 1dbw_A Transcriptional regulat 43.0 1.3E+02 0.0044 24.1 11.3 109 431-552 3-121 (126)
128 2rdm_A Response regulator rece 42.7 1.3E+02 0.0045 24.1 12.1 110 431-553 5-124 (132)
129 3f6r_A Flavodoxin; FMN binding 42.6 23 0.0008 30.5 4.4 38 85-127 2-39 (148)
130 2zki_A 199AA long hypothetical 42.5 18 0.00063 32.9 3.8 38 84-127 4-41 (199)
131 3eod_A Protein HNR; response r 42.4 1.3E+02 0.0045 24.1 10.2 109 431-552 7-126 (130)
132 2d1p_B TUSC, hypothetical UPF0 42.2 24 0.00081 29.6 4.1 39 86-127 3-41 (119)
133 3dqp_A Oxidoreductase YLBE; al 41.7 14 0.00046 34.3 2.8 33 85-127 1-33 (219)
134 3bq9_A Predicted rossmann fold 41.2 2.4E+02 0.0084 29.4 12.3 136 401-552 144-332 (460)
135 3r0j_A Possible two component 41.0 2E+02 0.0067 26.7 11.2 109 431-552 23-141 (250)
136 2phj_A 5'-nucleotidase SURE; S 41.0 17 0.00056 35.2 3.3 38 85-130 2-39 (251)
137 1lss_A TRK system potassium up 40.9 26 0.0009 29.3 4.4 33 84-127 4-36 (140)
138 3nhm_A Response regulator; pro 40.9 1.4E+02 0.0048 24.0 11.3 107 432-552 5-122 (133)
139 1k66_A Phytochrome response re 40.4 1.5E+02 0.0052 24.2 11.3 109 431-552 6-138 (149)
140 3t6k_A Response regulator rece 40.3 1.5E+02 0.0052 24.2 12.2 108 432-552 5-124 (136)
141 3gpi_A NAD-dependent epimerase 39.9 19 0.00065 34.8 3.7 35 82-127 1-35 (286)
142 4dad_A Putative pilus assembly 39.2 86 0.0029 26.0 7.6 67 476-552 67-141 (146)
143 2pzm_A Putative nucleotide sug 38.6 17 0.00059 36.0 3.2 38 80-127 16-53 (330)
144 3of5_A Dethiobiotin synthetase 38.4 29 0.001 32.7 4.6 40 83-126 2-41 (228)
145 2e6c_A 5'-nucleotidase SURE; S 38.3 19 0.00066 34.6 3.3 38 85-130 1-38 (244)
146 3qvl_A Putative hydantoin race 38.2 95 0.0032 29.5 8.3 39 84-127 1-39 (245)
147 2z1m_A GDP-D-mannose dehydrata 37.8 19 0.00063 35.7 3.3 35 83-127 2-36 (345)
148 3fgn_A Dethiobiotin synthetase 37.7 36 0.0012 32.8 5.1 41 82-126 23-63 (251)
149 1ydg_A Trp repressor binding p 37.6 31 0.0011 31.7 4.7 39 84-127 6-44 (211)
150 1bg6_A N-(1-D-carboxylethyl)-L 37.3 26 0.00087 35.2 4.3 35 82-127 2-36 (359)
151 1f4p_A Flavodoxin; electron tr 37.1 26 0.0009 30.0 3.8 38 85-127 1-38 (147)
152 1j9j_A Stationary phase surviV 36.8 21 0.00071 34.4 3.3 38 85-130 1-38 (247)
153 3ghy_A Ketopantoate reductase 36.1 21 0.00071 35.8 3.3 35 82-127 1-35 (335)
154 2ph1_A Nucleotide-binding prot 36.1 25 0.00085 33.7 3.8 37 85-127 18-56 (262)
155 3gl9_A Response regulator; bet 35.7 1.7E+02 0.0057 23.4 11.5 106 433-551 4-121 (122)
156 3i6i_A Putative leucoanthocyan 35.5 21 0.00072 35.6 3.3 36 82-127 8-43 (346)
157 3kjh_A CO dehydrogenase/acetyl 34.5 21 0.00073 33.4 3.0 35 85-127 1-37 (254)
158 2qxy_A Response regulator; reg 34.4 1.9E+02 0.0064 23.6 9.7 108 431-552 4-121 (142)
159 2dkn_A 3-alpha-hydroxysteroid 34.3 26 0.00088 32.9 3.5 25 100-127 10-34 (255)
160 1l5x_A SurviVal protein E; str 34.2 23 0.00079 34.7 3.2 38 85-130 1-38 (280)
161 2vzf_A NADH-dependent FMN redu 34.1 33 0.0011 31.3 4.2 40 85-127 3-43 (197)
162 1fjh_A 3alpha-hydroxysteroid d 34.1 27 0.00091 33.1 3.6 34 85-127 1-34 (257)
163 2q62_A ARSH; alpha/beta, flavo 33.8 35 0.0012 32.8 4.3 42 83-127 33-74 (247)
164 3gd5_A Otcase, ornithine carba 33.6 1.4E+02 0.0048 29.7 8.9 85 388-485 146-234 (323)
165 3ilh_A Two component response 33.5 1.9E+02 0.0066 23.5 12.2 111 431-552 9-139 (146)
166 3rpe_A MDAB, modulator of drug 33.5 35 0.0012 32.1 4.2 42 84-127 25-69 (218)
167 2v4n_A Multifunctional protein 33.3 27 0.00091 33.8 3.4 39 84-130 1-39 (254)
168 1xv5_A AGT, DNA alpha-glucosyl 33.2 3E+02 0.01 25.5 26.9 146 404-560 199-373 (401)
169 3slg_A PBGP3 protein; structur 33.1 20 0.00069 36.1 2.7 39 79-127 19-58 (372)
170 4huj_A Uncharacterized protein 32.9 27 0.00091 32.6 3.3 35 82-127 21-55 (220)
171 2b69_A UDP-glucuronate decarbo 32.9 26 0.00088 34.9 3.4 40 78-127 21-60 (343)
172 3nav_A Tryptophan synthase alp 32.7 3E+02 0.01 26.5 11.0 118 402-525 98-237 (271)
173 2ywr_A Phosphoribosylglycinami 32.6 61 0.0021 30.3 5.8 34 85-127 2-37 (216)
174 3q0i_A Methionyl-tRNA formyltr 32.4 31 0.001 34.5 3.8 35 82-127 5-39 (318)
175 3rqi_A Response regulator prot 32.3 1.3E+02 0.0046 26.3 8.0 109 431-552 7-125 (184)
176 3mcu_A Dipicolinate synthase, 32.2 36 0.0012 31.7 4.0 37 83-127 4-42 (207)
177 4dzz_A Plasmid partitioning pr 32.2 35 0.0012 30.8 4.0 39 85-127 1-39 (206)
178 4e21_A 6-phosphogluconate dehy 32.2 25 0.00084 35.9 3.1 36 81-127 19-54 (358)
179 3cz5_A Two-component response 32.1 2.2E+02 0.0075 23.6 10.3 110 431-552 5-125 (153)
180 3f6p_A Transcriptional regulat 32.0 1.9E+02 0.0065 22.9 10.4 106 433-551 4-118 (120)
181 3nbm_A PTS system, lactose-spe 31.8 51 0.0017 27.2 4.4 44 83-132 5-48 (108)
182 3lua_A Response regulator rece 31.7 1.4E+02 0.0049 24.3 7.7 109 431-552 4-127 (140)
183 3uuw_A Putative oxidoreductase 31.6 93 0.0032 30.3 7.3 91 403-507 7-97 (308)
184 1mb3_A Cell division response 31.4 1.9E+02 0.0065 22.7 10.7 107 433-552 3-121 (124)
185 1d4a_A DT-diaphorase, quinone 31.4 45 0.0015 32.4 4.8 41 84-127 2-42 (273)
186 4b4t_W RPN10, 26S proteasome r 31.1 54 0.0018 31.9 5.2 52 402-454 108-160 (268)
187 3r6d_A NAD-dependent epimerase 31.0 37 0.0013 31.2 4.0 25 100-127 14-39 (221)
188 2xj4_A MIPZ; replication, cell 31.0 36 0.0012 33.1 4.0 38 84-127 3-42 (286)
189 2ixd_A LMBE-related protein; h 30.8 41 0.0014 32.1 4.3 42 82-129 1-42 (242)
190 3guy_A Short-chain dehydrogena 30.8 26 0.00088 32.7 2.8 34 85-127 1-34 (230)
191 3i83_A 2-dehydropantoate 2-red 30.7 30 0.001 34.4 3.4 33 84-127 2-34 (320)
192 1ybx_A Conserved hypothetical 30.5 1.2E+02 0.004 26.5 6.6 51 500-552 66-116 (143)
193 4id9_A Short-chain dehydrogena 30.4 26 0.00088 34.9 2.9 38 80-127 15-52 (347)
194 4hs4_A Chromate reductase; tri 30.4 21 0.00073 32.9 2.1 40 81-124 3-43 (199)
195 3ego_A Probable 2-dehydropanto 30.1 34 0.0012 33.8 3.7 32 84-127 2-33 (307)
196 4g65_A TRK system potassium up 30.1 15 0.00053 38.8 1.2 112 404-518 211-345 (461)
197 2gk4_A Conserved hypothetical 30.1 35 0.0012 32.5 3.5 26 99-127 27-52 (232)
198 2x4g_A Nucleoside-diphosphate- 29.8 33 0.0011 33.9 3.6 34 84-127 13-46 (342)
199 3lqk_A Dipicolinate synthase s 29.2 38 0.0013 31.4 3.6 37 83-127 6-44 (201)
200 2rjn_A Response regulator rece 29.0 2.5E+02 0.0085 23.3 12.1 110 430-552 6-126 (154)
201 1ys7_A Transcriptional regulat 29.0 3.2E+02 0.011 24.5 12.2 109 431-552 7-125 (233)
202 3qvo_A NMRA family protein; st 29.0 28 0.00097 32.5 2.8 25 100-127 32-57 (236)
203 2ew2_A 2-dehydropantoate 2-red 28.9 29 0.001 33.9 3.0 33 84-127 3-35 (316)
204 3cu5_A Two component transcrip 28.9 2.4E+02 0.0082 23.1 10.9 66 477-552 50-123 (141)
205 3eag_A UDP-N-acetylmuramate:L- 28.9 38 0.0013 33.8 3.9 32 84-125 4-35 (326)
206 1e6u_A GDP-fucose synthetase; 28.5 23 0.0008 34.7 2.2 35 82-126 1-35 (321)
207 2vvp_A Ribose-5-phosphate isom 28.4 37 0.0013 30.3 3.2 37 82-126 1-37 (162)
208 3ruf_A WBGU; rossmann fold, UD 28.4 31 0.0011 34.2 3.2 36 82-127 23-58 (351)
209 4e3z_A Putative oxidoreductase 28.1 35 0.0012 32.7 3.3 37 82-127 23-59 (272)
210 1mvo_A PHOP response regulator 28.1 2.3E+02 0.008 22.7 11.9 108 432-552 4-121 (136)
211 3g17_A Similar to 2-dehydropan 28.0 24 0.00084 34.5 2.2 33 84-127 2-34 (294)
212 2iz6_A Molybdenum cofactor car 28.0 1.5E+02 0.005 26.7 7.3 136 403-552 14-174 (176)
213 3b6i_A Flavoprotein WRBA; flav 27.8 51 0.0018 29.7 4.3 38 85-127 2-40 (198)
214 2i6u_A Otcase, ornithine carba 27.7 2.6E+02 0.0088 27.6 9.6 87 387-485 136-226 (307)
215 3hn2_A 2-dehydropantoate 2-red 27.6 39 0.0013 33.3 3.7 33 84-127 2-34 (312)
216 3tqq_A Methionyl-tRNA formyltr 27.6 52 0.0018 32.8 4.5 34 83-127 1-34 (314)
217 1t0i_A YLR011WP; FMN binding p 27.5 58 0.002 29.2 4.6 40 85-127 1-46 (191)
218 3c1o_A Eugenol synthase; pheny 27.3 33 0.0011 33.6 3.0 34 84-127 4-37 (321)
219 3enk_A UDP-glucose 4-epimerase 27.3 41 0.0014 33.2 3.8 35 83-127 4-38 (341)
220 1dhr_A Dihydropteridine reduct 27.1 42 0.0014 31.5 3.6 34 85-127 7-40 (241)
221 3mm4_A Histidine kinase homolo 27.0 3.4E+02 0.012 24.2 10.3 108 431-552 61-196 (206)
222 3b2n_A Uncharacterized protein 27.0 2.5E+02 0.0084 22.6 11.5 109 432-552 4-123 (133)
223 1rtt_A Conserved hypothetical 27.0 20 0.00069 32.6 1.3 41 82-126 4-44 (193)
224 3bfv_A CAPA1, CAPB2, membrane 26.9 56 0.0019 31.6 4.6 41 83-127 80-120 (271)
225 3lte_A Response regulator; str 26.8 2.4E+02 0.0082 22.4 10.5 109 431-552 6-125 (132)
226 2bka_A CC3, TAT-interacting pr 26.7 33 0.0011 31.9 2.8 36 82-127 16-53 (242)
227 3i42_A Response regulator rece 26.6 2.4E+02 0.0082 22.3 10.0 108 432-552 4-122 (127)
228 3kkj_A Amine oxidase, flavin-c 26.6 34 0.0011 31.5 2.8 29 85-124 3-31 (336)
229 2fzv_A Putative arsenical resi 26.6 55 0.0019 32.0 4.4 43 82-127 56-98 (279)
230 3k9g_A PF-32 protein; ssgcid, 26.6 30 0.001 33.1 2.5 38 83-127 25-64 (267)
231 2pi1_A D-lactate dehydrogenase 26.5 1.9E+02 0.0065 28.8 8.6 44 470-513 188-236 (334)
232 2qv0_A Protein MRKE; structura 26.4 2.6E+02 0.0089 22.7 12.2 111 430-552 8-127 (143)
233 3l77_A Short-chain alcohol deh 26.4 43 0.0015 31.1 3.6 34 85-127 2-35 (235)
234 2b4a_A BH3024; flavodoxin-like 26.2 2.6E+02 0.0088 22.6 10.5 109 430-552 14-131 (138)
235 1ka9_F Imidazole glycerol phos 26.2 2.7E+02 0.0092 25.9 9.4 67 475-545 164-241 (252)
236 1qo0_D AMIR; binding protein, 26.0 2.8E+02 0.0095 24.3 9.0 106 431-552 12-125 (196)
237 2gdz_A NAD+-dependent 15-hydro 25.9 48 0.0016 31.6 3.9 33 86-127 8-40 (267)
238 3pg5_A Uncharacterized protein 25.9 40 0.0014 34.2 3.4 37 85-127 1-39 (361)
239 1e2b_A Enzyme IIB-cellobiose; 25.8 80 0.0027 25.8 4.6 45 82-132 1-45 (106)
240 1p9o_A Phosphopantothenoylcyst 25.7 52 0.0018 32.8 4.1 23 105-127 66-88 (313)
241 3rp8_A Flavoprotein monooxygen 25.7 40 0.0014 34.4 3.5 34 82-126 21-54 (407)
242 1n7h_A GDP-D-mannose-4,6-dehyd 25.6 42 0.0014 33.8 3.5 25 100-127 37-61 (381)
243 2nzw_A Alpha1,3-fucosyltransfe 25.6 94 0.0032 31.7 6.0 79 472-562 227-308 (371)
244 1sqs_A Conserved hypothetical 25.6 50 0.0017 31.1 3.9 40 85-127 2-42 (242)
245 3luf_A Two-component system re 25.4 4.2E+02 0.014 24.7 13.6 110 430-552 123-245 (259)
246 2r85_A PURP protein PF1517; AT 25.2 39 0.0013 33.3 3.1 32 84-127 2-33 (334)
247 3crn_A Response regulator rece 25.1 2.7E+02 0.0091 22.4 10.5 108 432-552 4-121 (132)
248 4had_A Probable oxidoreductase 25.0 1.1E+02 0.0037 30.4 6.5 93 402-507 23-117 (350)
249 1t5b_A Acyl carrier protein ph 25.0 58 0.002 29.3 4.1 41 85-127 2-44 (201)
250 3ea0_A ATPase, para family; al 24.9 51 0.0018 30.7 3.8 41 83-127 2-43 (245)
251 2pk3_A GDP-6-deoxy-D-LYXO-4-he 24.9 45 0.0016 32.5 3.5 25 100-127 21-45 (321)
252 3oh8_A Nucleoside-diphosphate 24.7 43 0.0015 35.7 3.6 34 84-127 147-180 (516)
253 2ehd_A Oxidoreductase, oxidore 24.7 43 0.0015 31.0 3.2 25 100-127 14-38 (234)
254 2ayx_A Sensor kinase protein R 24.6 4.2E+02 0.014 24.5 10.5 66 477-552 174-247 (254)
255 3r6w_A FMN-dependent NADH-azor 24.6 51 0.0017 30.4 3.6 40 85-127 2-44 (212)
256 2afh_E Nitrogenase iron protei 24.3 65 0.0022 31.1 4.5 39 84-127 1-39 (289)
257 2acv_A Triterpene UDP-glucosyl 24.3 37 0.0012 35.8 2.8 39 84-128 9-49 (463)
258 2bi7_A UDP-galactopyranose mut 24.2 46 0.0016 34.0 3.5 35 82-127 1-35 (384)
259 3qxc_A Dethiobiotin synthetase 24.1 71 0.0024 30.4 4.6 40 83-126 19-58 (242)
260 3oet_A Erythronate-4-phosphate 24.1 2.3E+02 0.0078 28.9 8.7 81 431-513 119-216 (381)
261 3f2v_A General stress protein 23.9 34 0.0012 31.4 2.2 38 85-127 2-39 (192)
262 2w37_A Ornithine carbamoyltran 23.8 2.5E+02 0.0087 28.3 8.8 87 387-485 164-254 (359)
263 1ks9_A KPA reductase;, 2-dehyd 23.8 53 0.0018 31.5 3.8 32 85-127 1-32 (291)
264 3ph3_A Ribose-5-phosphate isom 23.7 61 0.0021 29.1 3.7 43 77-127 13-55 (169)
265 2jba_A Phosphate regulon trans 23.7 2.7E+02 0.0092 21.9 8.1 107 433-552 4-122 (127)
266 1xdw_A NAD+-dependent (R)-2-hy 23.6 98 0.0033 30.9 5.8 44 470-513 192-240 (331)
267 1oc2_A DTDP-glucose 4,6-dehydr 23.5 41 0.0014 33.3 2.9 24 101-127 14-39 (348)
268 2k6g_A Replication factor C su 23.5 1.7E+02 0.0057 24.1 6.2 38 403-441 36-80 (109)
269 3k96_A Glycerol-3-phosphate de 23.3 41 0.0014 34.1 2.9 34 83-127 28-61 (356)
270 1fy2_A Aspartyl dipeptidase; s 23.3 1.4E+02 0.0048 28.0 6.5 103 405-510 4-123 (229)
271 3i4f_A 3-oxoacyl-[acyl-carrier 23.2 47 0.0016 31.5 3.2 35 84-127 6-40 (264)
272 2yq5_A D-isomer specific 2-hyd 23.2 2.1E+02 0.0072 28.7 8.2 44 470-513 194-242 (343)
273 2y88_A Phosphoribosyl isomeras 23.1 2.6E+02 0.0089 25.9 8.5 59 468-526 153-226 (244)
274 2gwr_A DNA-binding response re 23.1 4.2E+02 0.014 24.0 11.0 108 432-552 6-122 (238)
275 3p0r_A Azoreductase; structura 23.1 63 0.0022 29.8 4.0 42 84-127 4-48 (211)
276 1t2a_A GDP-mannose 4,6 dehydra 23.0 51 0.0018 33.1 3.6 25 100-127 33-57 (375)
277 1duv_G Octase-1, ornithine tra 23.0 3E+02 0.01 27.4 9.2 87 388-485 142-233 (333)
278 1zh2_A KDP operon transcriptio 22.9 2.7E+02 0.0091 21.6 9.6 107 433-552 3-118 (121)
279 1bvy_F Protein (cytochrome P45 22.9 58 0.002 29.7 3.6 39 84-127 21-59 (191)
280 3pp8_A Glyoxylate/hydroxypyruv 22.9 1.1E+02 0.0038 30.3 5.9 46 468-513 185-235 (315)
281 1kgs_A DRRD, DNA binding respo 22.8 4E+02 0.014 23.6 11.5 108 432-552 3-120 (225)
282 2vo1_A CTP synthase 1; pyrimid 22.8 84 0.0029 30.5 4.7 43 82-127 20-62 (295)
283 3lcm_A SMU.1420, putative oxid 22.8 53 0.0018 30.0 3.3 38 85-127 1-39 (196)
284 4ekn_B Aspartate carbamoyltran 22.8 2E+02 0.0069 28.3 7.7 112 353-490 121-233 (306)
285 3dff_A Teicoplanin pseudoaglyc 22.8 72 0.0025 30.9 4.4 40 84-129 7-46 (273)
286 3kkl_A Probable chaperone prot 22.7 72 0.0024 30.4 4.3 45 83-127 2-51 (244)
287 1fmt_A Methionyl-tRNA FMet for 22.4 78 0.0027 31.5 4.7 35 82-127 1-35 (314)
288 3d7l_A LIN1944 protein; APC893 22.3 54 0.0018 29.5 3.3 33 84-127 3-35 (202)
289 3dtt_A NADP oxidoreductase; st 22.3 53 0.0018 31.1 3.3 36 81-127 16-51 (245)
290 2bw0_A 10-FTHFDH, 10-formyltet 22.3 75 0.0026 31.8 4.5 35 82-127 20-54 (329)
291 3l6e_A Oxidoreductase, short-c 22.2 59 0.002 30.4 3.6 34 85-127 3-36 (235)
292 4ds3_A Phosphoribosylglycinami 22.2 1.1E+02 0.0037 28.4 5.3 37 82-127 5-43 (209)
293 1qyc_A Phenylcoumaran benzylic 22.2 36 0.0012 33.0 2.2 34 84-127 4-37 (308)
294 3q9l_A Septum site-determining 22.1 71 0.0024 30.0 4.3 39 85-127 2-40 (260)
295 1zmt_A Haloalcohol dehalogenas 22.1 30 0.001 32.9 1.4 34 85-127 1-34 (254)
296 1wma_A Carbonyl reductase [NAD 22.0 51 0.0017 31.1 3.2 35 84-127 3-38 (276)
297 4e38_A Keto-hydroxyglutarate-a 22.0 3.5E+02 0.012 25.4 9.0 85 418-505 46-132 (232)
298 2ark_A Flavodoxin; FMN, struct 21.8 72 0.0024 28.6 4.0 38 85-127 5-43 (188)
299 1vhc_A Putative KHG/KDPG aldol 21.7 4E+02 0.014 24.7 9.3 85 418-505 29-115 (224)
300 3en0_A Cyanophycinase; serine 21.7 4.9E+02 0.017 25.2 10.3 107 404-510 28-155 (291)
301 2o4c_A Erythronate-4-phosphate 21.6 2.6E+02 0.0087 28.5 8.5 44 470-513 161-213 (380)
302 3fni_A Putative diflavin flavo 21.6 98 0.0033 27.1 4.7 39 84-127 4-42 (159)
303 2xdo_A TETX2 protein; tetracyc 21.6 58 0.002 33.1 3.7 36 81-127 23-58 (398)
304 3dfi_A Pseudoaglycone deacetyl 21.5 86 0.0029 30.3 4.7 40 84-129 7-46 (270)
305 1orr_A CDP-tyvelose-2-epimeras 21.5 57 0.002 32.1 3.5 23 101-126 11-33 (347)
306 3cio_A ETK, tyrosine-protein k 21.4 85 0.0029 30.8 4.7 41 83-127 102-142 (299)
307 1dxy_A D-2-hydroxyisocaproate 21.4 1.9E+02 0.0065 28.8 7.4 44 470-513 191-239 (333)
308 2lpm_A Two-component response 21.4 1.8E+02 0.0062 24.2 6.2 109 430-550 7-120 (123)
309 2c20_A UDP-glucose 4-epimerase 21.4 58 0.002 31.8 3.5 26 102-127 9-34 (330)
310 3rc1_A Sugar 3-ketoreductase; 21.3 2.1E+02 0.0072 28.4 7.8 92 402-507 27-120 (350)
311 1j4a_A D-LDH, D-lactate dehydr 21.2 2.1E+02 0.0071 28.5 7.6 44 470-513 193-241 (333)
312 3kyj_B CHEY6 protein, putative 21.1 3.4E+02 0.012 22.1 8.3 92 431-524 13-117 (145)
313 3hwr_A 2-dehydropantoate 2-red 21.0 60 0.002 32.1 3.5 34 82-127 17-50 (318)
314 3sju_A Keto reductase; short-c 21.0 61 0.0021 31.2 3.6 35 84-127 23-57 (279)
315 3u3x_A Oxidoreductase; structu 21.0 2.3E+02 0.0078 28.3 8.0 92 402-507 26-119 (361)
316 4ep1_A Otcase, ornithine carba 20.8 3.4E+02 0.012 27.1 9.0 85 388-485 168-256 (340)
317 1geq_A Tryptophan synthase alp 20.8 4.9E+02 0.017 24.0 10.0 120 403-525 82-220 (248)
318 3m1a_A Putative dehydrogenase; 20.8 56 0.0019 31.3 3.2 34 85-127 5-38 (281)
319 2q1w_A Putative nucleotide sug 20.8 62 0.0021 31.9 3.6 36 82-127 19-54 (333)
320 1xhf_A DYE resistance, aerobic 20.7 3.1E+02 0.01 21.4 10.8 108 432-552 4-120 (123)
321 3q9s_A DNA-binding response re 20.6 3.4E+02 0.012 25.1 8.8 108 432-552 38-154 (249)
322 2p0o_A Hypothetical protein DU 20.6 3.9E+02 0.013 27.0 9.5 99 324-453 124-236 (372)
323 1p2f_A Response regulator; DRR 20.6 3.2E+02 0.011 24.3 8.4 106 433-552 4-117 (220)
324 2f62_A Nucleoside 2-deoxyribos 20.6 2.8E+02 0.0096 24.4 7.5 36 472-507 63-105 (161)
325 1srr_A SPO0F, sporulation resp 20.5 3.1E+02 0.011 21.5 9.7 107 432-551 4-120 (124)
326 2hun_A 336AA long hypothetical 20.5 52 0.0018 32.3 3.0 35 82-126 1-37 (336)
327 2hna_A Protein MIOC, flavodoxi 20.5 67 0.0023 27.4 3.3 36 85-125 2-37 (147)
328 2pl1_A Transcriptional regulat 20.4 3E+02 0.01 21.3 11.2 107 433-552 2-118 (121)
329 2fb6_A Conserved hypothetical 20.4 63 0.0021 27.0 3.0 40 84-127 7-48 (117)
330 3dfz_A SIRC, precorrin-2 dehyd 20.3 3.2E+02 0.011 25.5 8.2 117 418-552 41-163 (223)
331 2hpv_A FMN-dependent NADH-azor 20.2 74 0.0025 28.9 3.8 40 85-126 2-44 (208)
332 2gkg_A Response regulator homo 20.1 3.1E+02 0.011 21.3 9.7 107 432-552 6-125 (127)
333 3fwz_A Inner membrane protein 20.0 43 0.0015 28.5 1.9 33 84-127 7-39 (140)
334 1iow_A DD-ligase, DDLB, D-ALA\ 20.0 51 0.0018 31.9 2.8 42 84-127 2-43 (306)
335 3rd5_A Mypaa.01249.C; ssgcid, 20.0 1E+02 0.0035 29.6 5.0 25 100-127 25-49 (291)
No 1
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A*
Probab=100.00 E-value=8.5e-83 Score=707.77 Aligned_cols=530 Identities=71% Similarity=1.192 Sum_probs=458.6
Q ss_pred CCCceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEeecCCcccccCCCceEEEEEeCCeeeEEEEEEeeecC
Q 007247 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRG 161 (611)
Q Consensus 82 ~~~MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 161 (611)
...||||||++|++|+.|+||+++++..|+++|+++||+|.||+|.|++..+.++......+.+.+..+.+++++...+|
T Consensus 7 ~~~MkIl~vs~E~~P~~K~GGLadvv~~L~~aL~~~G~~V~Vi~P~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 86 (536)
T 3vue_A 7 HHHMNVVFVGAEMAPWSKTGGLGDVLGGLPPAMAANGHRVMVISPRYDQYKDAWDTSVVAEIKVADRYERVRFFHCYKRG 86 (536)
T ss_dssp -CCCEEEEECSCBTTTBCSSHHHHHHHHHHHHHHTTTCEEEEEEECCSCCTTCEEEEEEEEEEETTEEEEEEEEECEETT
T ss_pred CCCcEEEEEEEeccchhccCcHHHHHHHHHHHHHHcCCeEEEEecCchhhhhhcccceEEEEEecCceEEEEEEEEEECC
Confidence 45799999999999999999999999999999999999999999999999888888888889999999999999999999
Q ss_pred ceEEEEeCccchhhhcCCCCccccCCCCCCCCcchHHHHHHHHHHHHHhhHHhccCCCCCCCCCCCCCeEEEecCCccch
Q 007247 162 VDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSL 241 (611)
Q Consensus 162 v~~~~i~~~~~~~~~~~~~~~~iy~~~~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Dvivh~hd~~~~~ 241 (611)
|+++++++|.++.+.++..++.+|++..|.+|.|+..||.+|+++++++++.+.....+++.+..++|+|+|+|||++++
T Consensus 87 v~~y~id~~~~~~r~~~~~~~~~Y~~~~~~~~~d~~~rf~~f~~a~l~~~~~l~~~~~~~~~~~~~~ddIiH~hDW~t~l 166 (536)
T 3vue_A 87 VDRVFIDHPSFLEKVWGKTGEKIYGPDTGVDYKDNQMRFSLLCQAALEAPRILNLNNNPYFKGTYGEDVVFVCNDWHTGP 166 (536)
T ss_dssp EEEEEEECTTTTCC------------------CHHHHHHHHHHHHHHHHHHHCCCCCCTTCCSCCCSCEEEEEESGGGST
T ss_pred ceEEEecChhhhccccccCCCcccCCCccCccchHHHHHHHHHHHHHHHHHHhccccchhhhccCCCCEEEEECcchHHH
Confidence 99999999999999999999999999999999999999999999999999999888778888887887799999999999
Q ss_pred HHHHHHHhccCCCCCCCceEEEEEecCccccccCcccccccCCCcccccccccccCCCCCCCCcchhHhHHHhhhccEEE
Q 007247 242 IPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVL 321 (611)
Q Consensus 242 ~~~~l~~~~~~~~~~~~~k~v~~iH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~vi 321 (611)
+|.+++..+...+.+.++|+|+|+||+.+||.|+...+..++++..+.....+...+..+.....+++++.++..||.|+
T Consensus 167 ~~~~l~~~~~~~~~~~~~~~V~TiHnl~~qg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~k~~i~~ad~v~ 246 (536)
T 3vue_A 167 LASYLKNNYQPNGIYRNAKVAFCIHNISYQGRFAFEDYPELNLSERFRSSFDFIDGYDTPVEGRKINWMKAGILEADRVL 246 (536)
T ss_dssp HHHHHHHHTTTTTSSTTCEEEEEESCTTCCCEEEGGGGGGGCCCGGGHHHHEEEETTTSTTCEEEEEHHHHHHHHCSEEE
T ss_pred HHHHHHHhhhhhhhhcccceeeeecCcccccccchhhhhhcCCchhhcchhhhhhcccccccccchhHHHHHHHhccEEE
Confidence 99999998888788889999999999999999999999999998887776666677776777788999999999999999
Q ss_pred ecCHHHHHHHHcCcCCCcccchhhhccceeEeeCCcccCCcCCCCccccccccCcchhhhccHHHHHHHHHHhCCCCCCC
Q 007247 322 TVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRN 401 (611)
Q Consensus 322 ~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~Ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~ 401 (611)
|||+.+++++.....+|..++...+..++.+|+||+|.+.|+|.+++++..+|+..+....|...+..+++++|++.+++
T Consensus 247 tVS~~~a~ei~~~~~~g~~l~~~~~~~~i~~I~NGiD~~~~~p~~d~~~~~~~~~~~~~~~K~~~k~~l~~~~gl~~d~~ 326 (536)
T 3vue_A 247 TVSPYYAEELISGIARGCELDNIMRLTGITGIVNGMDVSEWDPSKDKYITAKYDATTAIEAKALNKEALQAEAGLPVDRK 326 (536)
T ss_dssp ESCHHHHHHHHTTCCCCSSSCCCSCCCSCEECCCCCCTTTSCTTTCSSSSCCCCTTTHHHHHHHHHHHHHHHTTSCCCTT
T ss_pred EcCHHHhhhhhcccccccccccccccCCeEEEECCcchhhcCCCCccccccccchhhhhhhhHHHHHHHHHhcCCCCCCC
Confidence 99999999998766677777777777899999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEcCcccccCHHHHHHHHHhcccCCcEEEEEeCCCchhHHHHHHHHHHCCCceEEecccChHHHHHHHHHccEEE
Q 007247 402 IPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFIL 481 (611)
Q Consensus 402 ~~~il~iGrl~~~Kg~d~li~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~i~~~aDv~l 481 (611)
.|+|+|+||+.++||++.|++|++++.+++++|+|+|.|+......++.+...+++++.+.+.++.+..+.+|++||++|
T Consensus 327 ~p~i~~vgRl~~~Kg~~~li~a~~~l~~~~~~l~l~G~G~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~aD~~v 406 (536)
T 3vue_A 327 IPLIAFIGRLEEQKGPDVMAAAIPELMQEDVQIVLLGTGKKKFEKLLKSMEEKYPGKVRAVVKFNAPLAHLIMAGADVLA 406 (536)
T ss_dssp SCEEEEECCBSGGGCHHHHHHHHHHHTTSSCEEEEECCBCHHHHHHHHHHHHHSTTTEEEECSCCHHHHHHHHHHCSEEE
T ss_pred CcEEEEEeeccccCChHHHHHHHHHhHhhCCeEEEEeccCchHHHHHHHHHhhcCCceEEEEeccHHHHHHHHHhhheee
Confidence 99999999999999999999999999888999999999998888899999999999999999999999999999999999
Q ss_pred eCCCCCCCcHHHHHHHHcCCceEEcCCcccccceecCcceEEecccccccccCCccCHHHHHHHHHHHHHhcCHHHHHHH
Q 007247 482 IPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEM 561 (611)
Q Consensus 482 ~pS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~~la~~i~~ll~~~~~~~~~~~ 561 (611)
+||++|+||++++|||+||+|||+|++||+.|+|.|+.|||+++..+.++.+|++.|+++|+++|.++++.++.+.+.++
T Consensus 407 ~PS~~E~fgl~~lEAma~G~PvI~s~~gG~~e~V~dg~~G~~~~~~~~~g~l~~~~d~~~la~ai~ral~~~~~~~~~~~ 486 (536)
T 3vue_A 407 VPSRFEPCGLIQLQGMRYGTPCACASTGGLVDTVIEGKTGFHMGRLSVDCKVVEPSDVKKVAATLKRAIKVVGTPAYEEM 486 (536)
T ss_dssp ECCSCCSSCSHHHHHHHTTCCEEECSCTHHHHHCCBTTTEEECCCCCSCTTCCCHHHHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred cccccCCCCHHHHHHHHcCCCEEEcCCCCchheeeCCCCccccccCCCceeEECCCCHHHHHHHHHHHHHhcCcHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987667789999
Q ss_pred HHHHHHhhCCchHHHHHHHHHHHHHHHcCCCCCCCCCCcccchhhhcCCC
Q 007247 562 MKNGMAQDLSWKGPAKKWEETLLNLEVAGSEPGIDGEEIAPLAKENVATP 611 (611)
Q Consensus 562 ~~~~~~~~fsw~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (611)
++++++++|||+.++++|+++|+++...++.|+.++++++|+++|++|||
T Consensus 487 ~~~am~~~fSW~~~A~~y~~ly~~L~~~~~~p~~~~~~~aP~~~~~~~~p 536 (536)
T 3vue_A 487 VRNCMNQDLSWKGPAKNWENVLLGLGVAGSAPGIEGDEIAPLAKENVAAP 536 (536)
T ss_dssp HHHHHHSCCSSHHHHHHHHHHHHTTCC-----------------------
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhhhccCCCCCcccccCCCCCCCCCCC
Confidence 99999999999999999999999998888999999999999999999998
No 2
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=100.00 E-value=9.8e-50 Score=437.95 Aligned_cols=463 Identities=32% Similarity=0.576 Sum_probs=349.0
Q ss_pred ceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEeecCCcccccCCCceEEE-E-EeCCeeeEEEEEEeeecCc
Q 007247 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIE-L-KVGDKIEKVRFFHCHKRGV 162 (611)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~gv 162 (611)
|||++|+.+|+|+...||++.++..|+++|+++||+|+|+++.++.....+....... . ..++ ...+.+...+|+
T Consensus 1 MkIl~v~~~~~P~~~~GG~~~~~~~la~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~gv 77 (485)
T 2qzs_A 1 MQVLHVCSEMFPLLKTGGLADVIGALPAAQIADGVDARVLLPAFPDIRRGVTDAQVVSRRDTFAG---HITLLFGHYNGV 77 (485)
T ss_dssp CEEEEECSCBTTTBCSSHHHHHHHHHHHHHHHTTCEEEEEEECCHHHHHHCTTCEEEEEECCTTC---CEEEEEEEETTE
T ss_pred CeEEEEeeeccccccCCcHHHHHHHHHHHHHHcCCEEEEEecCccccccccccceeEEEecccCC---cEEEEEEEECCc
Confidence 8999999998886568999999999999999999999999987643222211111000 0 0000 122233335799
Q ss_pred eEEEEeCccchhhhcCCCCccccCCCCCCCCcchHHHHHHHHHHHHHhhHHhccCCCCCCCCCCCCCeEEEecCCccchH
Q 007247 163 DRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLI 242 (611)
Q Consensus 163 ~~~~i~~~~~~~~~~~~~~~~iy~~~~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Dvivh~hd~~~~~~ 242 (611)
.++++..+.++.+ . ..+|+...+.+|.++..++..+...+.++++.+.. ..+|| |||+|+|.++++
T Consensus 78 ~v~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~D-ivh~~~~~~~~~ 143 (485)
T 2qzs_A 78 GIYLIDAPHLYDR----P-GSPYHDTNLFAYTDNVLRFALLGWVGAEMASGLDP--------FWRPD-VVHAHDWHAGLA 143 (485)
T ss_dssp EEEEEECHHHHCC----S-SCSSBCTTSCBCTTHHHHHHHHHHHHHHHTTTSST--------TCCCS-EEEEETGGGTTH
T ss_pred EEEEEeChhhccC----C-CCccCCcccCCCCchHHHHHHHHHHHHHHHHHhcc--------CCCCC-EEEeeccchhHH
Confidence 9998876544432 0 01455444555777877887777777777665431 02699 999999988887
Q ss_pred HHHHHHhccCCCCCCCceEEEEEecCccccccCcccccccCCCcccccccccccCCCCCCCCcchhHhHHHhhhccEEEe
Q 007247 243 PCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLT 322 (611)
Q Consensus 243 ~~~l~~~~~~~~~~~~~k~v~~iH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~vi~ 322 (611)
+.+++... .++|+|+++|+..+++.++...+..++++..++.. ... .......+++..+..+|.+++
T Consensus 144 ~~~~~~~~------~~~p~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~----~~~---~~~~~~~~~~~~~~~ad~vi~ 210 (485)
T 2qzs_A 144 PAYLAARG------RPAKSVFTVHNLAYQGMFYAHHMNDIQLPWSFFNI----HGL---EFNGQISFLKAGLYYADHITA 210 (485)
T ss_dssp HHHHHHTT------CSSEEEEEESCTTCCCEEEGGGGGTTTCCGGGCST----TTT---EETTEEEHHHHHHHHCSEEEE
T ss_pred HHHHhhcc------CCCCEEEEecCccccCCCCHHHHHhcCCCchhccc----ccc---cccccccHHHHHHHhcCeEEe
Confidence 77766211 48999999999876655544334333444332110 000 001123567788899999999
Q ss_pred cCHHHHHHHHcCcCCCcccchhh--hc--cceeEeeCCcccCCcCCCCccccccccCcchhhhccHHHHHHHHHHhCCCC
Q 007247 323 VSPHYAQELVSGEDKGVELDNII--RK--TGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPV 398 (611)
Q Consensus 323 vS~~~~~~l~~~~~~g~~~~~~~--~~--~~i~vI~Ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~ 398 (611)
+|+..++.+.+. .+|..++.++ +. .++.+||||+|.+.|.|..++.+..+|+..++ ..+...+..+++++|++.
T Consensus 211 ~S~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~ 288 (485)
T 2qzs_A 211 VSPTYAREITEP-QFAYGMEGLLQQRHREGRLSGVLNGVDEKIWSPETDLLLASRYTRDTL-EDKAENKRQLQIAMGLKV 288 (485)
T ss_dssp SSHHHHHHTTSH-HHHTTCHHHHHHHHHTTCEEECCCCCCTTTSCTTTCTTSSSCCCTTCG-GGGHHHHHHHHHHHTCCC
T ss_pred cCHHHHHHHhcc-ccCcchHHHHHhhccCCceEEEecCCCccccCccccccccccccccch-hHHHHhHHHHHHHcCCCC
Confidence 999999988641 1232211111 11 48999999999999998877777778877765 466677888999999986
Q ss_pred CCCCcEEEEEcCcccccCHHHHHHHHHhcccCCcEEEEEeCCCchhHHHHHHHHHHCCCceEEecccChHHHHHHHHHcc
Q 007247 399 DRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGAD 478 (611)
Q Consensus 399 ~~~~~~il~iGrl~~~Kg~d~li~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~i~~~aD 478 (611)
+++.++|+|+||+.++||++.+++|++++.+++++|+|+|+|+..+.+.++++..++++++..+.++..+.+..+|+.||
T Consensus 289 ~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~l~ivG~g~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~ad 368 (485)
T 2qzs_A 289 DDKVPLFAVVSRLTSQKGLDLVLEALPGLLEQGGQLALLGAGDPVLQEGFLAAAAEYPGQVGVQIGYHEAFSHRIMGGAD 368 (485)
T ss_dssp CTTSCEEEEEEEESGGGCHHHHHHHHHHHHHTTCEEEEEEEECHHHHHHHHHHHHHSTTTEEEEESCCHHHHHHHHHHCS
T ss_pred CCCCeEEEEeccCccccCHHHHHHHHHHHhhCCcEEEEEeCCchHHHHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHhCC
Confidence 55678999999999999999999999999777999999999986688899999988877787666678787788999999
Q ss_pred EEEeCCCCCCCcHHHHHHHHcCCceEEcCCcccccceecC---------cceEEecccccccccCCccCHHHHHHHHHHH
Q 007247 479 FILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEG---------FTGFQMGSFSVDCEAVDPVDVAAVSTTVRRA 549 (611)
Q Consensus 479 v~l~pS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g---------~~G~l~~~~~~~~~~v~~~d~~~la~~i~~l 549 (611)
++|+||.+|+||++++|||+||+|||+|+.||+.|++.++ .+|+++ +++|+++++++|.++
T Consensus 369 v~v~pS~~E~~g~~~lEAma~G~PvI~s~~gg~~e~v~~~~~~~~~~~~~~G~l~----------~~~d~~~la~~i~~l 438 (485)
T 2qzs_A 369 VILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSDCSLENLADGVASGFVF----------EDSNAWSLLRAIRRA 438 (485)
T ss_dssp EEEECCSCCSSCSHHHHHHHHTCEEEEESSHHHHHHCCBCCHHHHHTTCCCBEEE----------CSSSHHHHHHHHHHH
T ss_pred EEEECCccCCCcHHHHHHHHCCCCEEECCCCCccceeccCccccccccccceEEE----------CCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998 899987 999999999999999
Q ss_pred HHhc-CHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHc
Q 007247 550 LATY-GTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVA 589 (611)
Q Consensus 550 l~~~-~~~~~~~~~~~~~~~~fsw~~~a~~~~~~~~~l~~~ 589 (611)
++.+ +++.+.+++++++.++|||+.++++|+++|+++...
T Consensus 439 l~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~ly~~~~~~ 479 (485)
T 2qzs_A 439 FVLWSRPSLWRFVQRQAMAMDFSWQVAAKSYRELYYRLKLE 479 (485)
T ss_dssp HHHHTSHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC--
T ss_pred HHHcCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhhhh
Confidence 9411 277888999998889999999999999999998654
No 3
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=100.00 E-value=6.1e-50 Score=439.57 Aligned_cols=464 Identities=35% Similarity=0.571 Sum_probs=351.4
Q ss_pred ceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEeecCCcccccCCCceEE-EEEeCCeeeEEEEEEeeecCce
Q 007247 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVI-ELKVGDKIEKVRFFHCHKRGVD 163 (611)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~gv~ 163 (611)
|||++|+.+++|+...||++.++.+|+++|+++||+|+|+++.++.....++..... +..+.. ....+..+...+|++
T Consensus 1 MkIl~v~~~~~P~~~~GG~~~~~~~la~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~gv~ 79 (485)
T 1rzu_A 1 MNVLSVSSEIYPLIKTGGLADVVGALPIALEAHGVRTRTLIPGYPAVKAAVTDPVKCFEFTDLL-GEKADLLEVQHERLD 79 (485)
T ss_dssp CEEEEECSCBTTTBCSSHHHHHHHHHHHHHHTTTCEEEEEEECCHHHHHHCCSCEEEEEESCSS-SCCEEEEEEEETTEE
T ss_pred CeEEEEeeeeccccccccHHHHHHHHHHHHHHcCCeEEEEecccccccccccccceeEEEEEec-CCeEEEEEEEecCce
Confidence 899999999988645799999999999999999999999998764322211111000 100000 001233334457999
Q ss_pred EEEEeCccchhhhcCCCCccccCCCCCCCCcchHHHHHHHHHHHHHhhHHh-ccCCCCCCCCCCCCCeEEEecCCccchH
Q 007247 164 RVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRIL-NLNSNKYFSGPYGEDVVFVANDWHTSLI 242 (611)
Q Consensus 164 ~~~i~~~~~~~~~~~~~~~~iy~~~~~~~~~~~~~r~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~Dvivh~hd~~~~~~ 242 (611)
+++++.+.++.+ . ..+|+...+.+|.++..++..+...+.++++.+ .. .+|| |||+|+|.++++
T Consensus 80 v~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~D-iIh~~~~~~~~~ 144 (485)
T 1rzu_A 80 LLILDAPAYYER----S-GGPYLGQTGKDYPDNWKRFAALSLAAARIGAGVLPG---------WRPD-MVHAHDWQAAMT 144 (485)
T ss_dssp EEEEECHHHHCS----S-SCSSBCTTSSBCTTHHHHHHHHHHHHHHHHTTCSSS---------CCCS-EEEEEHHHHTTH
T ss_pred EEEEeChHHhCC----C-ccccCCcccccccchHHHHHHHHHHHHHHHHHhccC---------CCCC-EEEecccchhHH
Confidence 998876544432 0 125554445667788888888888777777654 21 2699 999999888877
Q ss_pred HHHHHHhccCCCCCCCceEEEEEecCccccccCcccccccCCCcccccccccccCCCCCCCCcchhHhHHHhhhccEEEe
Q 007247 243 PCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLT 322 (611)
Q Consensus 243 ~~~l~~~~~~~~~~~~~k~v~~iH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~vi~ 322 (611)
+.+++... ..++|+|+++|+..+++.++...+..++++..++.. +.. .......+++..+..+|.+++
T Consensus 145 ~~~~~~~~-----~~~~p~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~----~~~---~~~~~~~~~~~~~~~ad~vi~ 212 (485)
T 1rzu_A 145 PVYMRYAE-----TPEIPSLLTIHNIAFQGQFGANIFSKLALPAHAFGM----EGI---EYYNDVSFLKGGLQTATALST 212 (485)
T ss_dssp HHHHHHSS-----SCCCCEEEEESCTTCCCEECGGGGGGSCCCGGGSST----TTT---EETTEEEHHHHHHHHCSEEEE
T ss_pred HHHHhhcc-----cCCCCEEEEecCccccCCCCHHHHhhcCCChhhccc----ccc---cccccccHHHHHHhhcCEEEe
Confidence 77776531 048999999999877666554444444444433210 000 000123567888899999999
Q ss_pred cCHHHHHHHHcCcCCCcccchhh--hccceeEeeCCcccCCcCCCCccccccccCcchhhhccHHHHHHHHHHhCCCCCC
Q 007247 323 VSPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDR 400 (611)
Q Consensus 323 vS~~~~~~l~~~~~~g~~~~~~~--~~~~i~vI~Ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~ 400 (611)
+|+..++.+.+. .+|..++.++ ...++.+|+||+|.+.|.|..+..+..+|+..++ .++...+..+++++|++.+
T Consensus 213 ~S~~~~~~~~~~-~~g~~~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~~- 289 (485)
T 1rzu_A 213 VSPSYAEEILTA-EFGMGLEGVIGSRAHVLHGIVNGIDADVWNPATDHLIHDNYSAANL-KNRALNKKAVAEHFRIDDD- 289 (485)
T ss_dssp SCHHHHHHTTSH-HHHTTCHHHHHTTGGGEEECCCCBCTTTSCTTTCTTSSSCCBTTBC-TTHHHHHHHHHHHHTCCCS-
T ss_pred cCHhHHHHHhcc-ccCcchHHHHHhhcCCceEEcCCCcccccCCcccccccccccccch-hhHHHhHHHHHHhcCCCCC-
Confidence 999999988741 0221111111 2348999999999999998877777777877764 5666678889999999854
Q ss_pred CCcEEEEEcCcccccCHHHHHHHHHhcccCCcEEEEEeCCCchhHHHHHHHHHHCCCceEEecccChHHHHHHHHHccEE
Q 007247 401 NIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFI 480 (611)
Q Consensus 401 ~~~~il~iGrl~~~Kg~d~li~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~i~~~aDv~ 480 (611)
+.++|+|+||+.++||++.+++|++++.+++++|+|+|+|+..+.+.++++..++++++..+.+++.+.+..+|+.||++
T Consensus 290 ~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~l~ivG~g~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~adv~ 369 (485)
T 1rzu_A 290 GSPLFCVISRLTWQKGIDLMAEAVDEIVSLGGRLVVLGAGDVALEGALLAAASRHHGRVGVAIGYNEPLSHLMQAGCDAI 369 (485)
T ss_dssp SSCEEEEESCBSTTTTHHHHHTTHHHHHHTTCEEEEEECBCHHHHHHHHHHHHHTTTTEEEEESCCHHHHHHHHHHCSEE
T ss_pred CCeEEEEEccCccccCHHHHHHHHHHHHhcCceEEEEeCCchHHHHHHHHHHHhCCCcEEEecCCCHHHHHHHHhcCCEE
Confidence 24699999999999999999999999977899999999998668889999998887778866677888878899999999
Q ss_pred EeCCCCCCCcHHHHHHHHcCCceEEcCCcccccceecC---------cceEEecccccccccCCccCHHHHHHHHHHHH-
Q 007247 481 LIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEG---------FTGFQMGSFSVDCEAVDPVDVAAVSTTVRRAL- 550 (611)
Q Consensus 481 l~pS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g---------~~G~l~~~~~~~~~~v~~~d~~~la~~i~~ll- 550 (611)
++||.+|+||++++|||+||+|||+++.||+.|++.++ .+|+++ +++|+++++++|.+++
T Consensus 370 v~pS~~E~~~~~~lEAma~G~PvI~s~~gg~~e~v~~~~~~~~~~~~~~G~l~----------~~~d~~~la~~i~~ll~ 439 (485)
T 1rzu_A 370 IIPSRFEPCGLTQLYALRYGCIPVVARTGGLADTVIDANHAALASKAATGVQF----------SPVTLDGLKQAIRRTVR 439 (485)
T ss_dssp EECCSCCSSCSHHHHHHHHTCEEEEESSHHHHHHCCBCCHHHHHTTCCCBEEE----------SSCSHHHHHHHHHHHHH
T ss_pred EECcccCCCCHHHHHHHHCCCCEEEeCCCChhheecccccccccccCCcceEe----------CCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998 899987 9999999999999999
Q ss_pred --HhcCHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHcCC
Q 007247 551 --ATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGS 591 (611)
Q Consensus 551 --~~~~~~~~~~~~~~~~~~~fsw~~~a~~~~~~~~~l~~~~~ 591 (611)
++ ++.+.+++++++.++|||+.++++|+++|++++..++
T Consensus 440 ~~~~--~~~~~~~~~~~~~~~fs~~~~~~~~~~~y~~~~~~~~ 480 (485)
T 1rzu_A 440 YYHD--PKLWTQMQKLGMKSDVSWEKSAGLYAALYSQLISKGH 480 (485)
T ss_dssp HHTC--HHHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHTC---
T ss_pred HhCC--HHHHHHHHHHHHHHhCChHHHHHHHHHHHHHhhCCCC
Confidence 45 7888899999888999999999999999999876543
No 4
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=100.00 E-value=5.3e-47 Score=408.73 Aligned_cols=423 Identities=24% Similarity=0.332 Sum_probs=326.4
Q ss_pred CCceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEeecCCcccccCCCceEEEEEeCCeeeEEEEEEeeecCc
Q 007247 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGV 162 (611)
Q Consensus 83 ~~MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv 162 (611)
++|||++|+.+|+| ...||++.++..|+++|+++||+|+|+++.++...+.. .....+ .+.....+......+|+
T Consensus 1 r~MkIl~v~~~~~p-~~~gG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~gv 75 (439)
T 3fro_A 1 RHMKVLLLGFEFLP-VKVGGLAEALTAISEALASLGHEVLVFTPSHGRFQGEE--IGKIRV--FGEEVQVKVSYEERGNL 75 (439)
T ss_dssp CCCEEEEECSCCTT-SCSSSHHHHHHHHHHHHHHTTCEEEEEEECTTCSCCEE--EEEEEE--TTEEEEEEEEEEEETTE
T ss_pred CceEEEEEecccCC-cccCCHHHHHHHHHHHHHHCCCeEEEEecCCCCchhhh--hccccc--cCcccceeeeeccCCCc
Confidence 37999999999888 46899999999999999999999999999876544321 111222 23445566666678999
Q ss_pred eEEEEeCccchhhhcCCCCccccCCCCCCCCcch-HHHHHHHHHHHHHhhHHhccCCCCCCCCCCCCCeEEEecCCccch
Q 007247 163 DRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDN-QLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSL 241 (611)
Q Consensus 163 ~~~~i~~~~~~~~~~~~~~~~iy~~~~~~~~~~~-~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Dvivh~hd~~~~~ 241 (611)
+++.++. .++.+ ..+|+. +.++ ..++..+.+.+.++++.+..+ ..+|| |||+|++...+
T Consensus 76 ~v~~~~~-~~~~~------~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~D-ii~~~~~~~~~ 135 (439)
T 3fro_A 76 RIYRIGG-GLLDS------EDVYGP-----GWDGLIRKAVTFGRASVLLLNDLLRE-------EPLPD-VVHFHDWHTVF 135 (439)
T ss_dssp EEEEEES-GGGGC------SSTTCS-----HHHHHHHHHHHHHHHHHHHHHHHTTT-------SCCCS-EEEEESGGGHH
T ss_pred eEEEecc-hhccc------cccccC-----CcchhhhhhHHHHHHHHHHHHHHhcc-------CCCCe-EEEecchhhhh
Confidence 9999987 44443 234432 5566 677788888888888776110 13699 99999998888
Q ss_pred HHHHHHHhccCCCCCCCceEEEEEecCccccccCcccccccCCCcccccccccccCCCCCCCCcchhHhHHHhhhccEEE
Q 007247 242 IPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVL 321 (611)
Q Consensus 242 ~~~~l~~~~~~~~~~~~~k~v~~iH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~vi 321 (611)
++.+++.. .++|+|+++|+...... +...+.. .............+++..++.+|.++
T Consensus 136 ~~~~~~~~-------~~~~~v~~~h~~~~~~~-~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~ad~ii 193 (439)
T 3fro_A 136 AGALIKKY-------FKIPAVFTIHRLNKSKL-PAFYFHE--------------AGLSELAPYPDIDPEHTGGYIADIVT 193 (439)
T ss_dssp HHHHHHHH-------HCCCEEEEESCCCCCCE-EHHHHHH--------------TTCGGGCCSSEECHHHHHHHHCSEEE
T ss_pred hHHHHhhc-------cCCCEEEEecccccccC-chHHhCc--------------cccccccccceeeHhhhhhhhccEEE
Confidence 88887755 48999999998654221 1000000 00000001122357788899999999
Q ss_pred ecCHHHHHHHHcCcCCCcccchhhhccceeEeeCCcccCCcCCCCccccccccCcchhhhccHHHHHHHHHHhCCCCCCC
Q 007247 322 TVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRN 401 (611)
Q Consensus 322 ~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~Ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~ 401 (611)
++|+.+++.... .++.. ..++.+||||+|.+.|.|... ...+...+..+++++|++. +
T Consensus 194 ~~S~~~~~~~~~--~~~~~------~~~i~vi~ngvd~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~--~ 251 (439)
T 3fro_A 194 TVSRGYLIDEWG--FFRNF------EGKITYVFNGIDCSFWNESYL------------TGSRDERKKSLLSKFGMDE--G 251 (439)
T ss_dssp ESCHHHHHHTHH--HHGGG------TTSEEECCCCCCTTTSCGGGS------------CSCHHHHHHHHHHHHTCCS--C
T ss_pred ecCHHHHHHHhh--hhhhc------CCceeecCCCCCchhcCcccc------------cchhhhhHHHHHHHcCCCC--C
Confidence 999999887432 11222 348999999999998876521 1233456788999999863 3
Q ss_pred CcEEEEEcCcc-cccCHHHHHHHHHhccc----CCcEEEEEeCCCchhHHHHHHHHHHCCCceEEecccChHHHHHHHHH
Q 007247 402 IPVIGFIGRLE-EQKGSDILAAAIPHFIK----ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAG 476 (611)
Q Consensus 402 ~~~il~iGrl~-~~Kg~d~li~a~~~l~~----~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~i~~~ 476 (611)
++|+|+||+. +.||++.+++|++++.+ ++++|+|+|+|+..+.+.++++..++++.+.+.+..+.+.+..+++.
T Consensus 252 -~~i~~~G~~~~~~Kg~~~li~a~~~l~~~~~~~~~~l~i~G~g~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 330 (439)
T 3fro_A 252 -VTFMFIGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDPELEGWARSLEEKHGNVKVITEMLSREFVRELYGS 330 (439)
T ss_dssp -EEEEEECCSSCTTBCHHHHHHHHHHHHTSGGGGGEEEEEECCCCHHHHHHHHHHHHHCTTEEEECSCCCHHHHHHHHTT
T ss_pred -cEEEEEcccccccccHHHHHHHHHHHHhcccCCCeEEEEEcCCChhHHHHHHHHHhhcCCEEEEcCCCCHHHHHHHHHH
Confidence 8999999999 99999999999999977 68999999999977789999999998854445555788888899999
Q ss_pred ccEEEeCCCCCCCcHHHHHHHHcCCceEEcCCcccccceecCcceEEecccccccccCCccCHHHHHHHHHHHHH-hcCH
Q 007247 477 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALA-TYGT 555 (611)
Q Consensus 477 aDv~l~pS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~~la~~i~~ll~-~~~~ 555 (611)
||++++||.+|+||++++|||+||+|||+|+.||+.|++.++ +|+++ +++|+++++++|.++++ + +
T Consensus 331 adv~v~ps~~e~~~~~~~EAma~G~Pvi~s~~~~~~e~~~~~-~g~~~----------~~~d~~~la~~i~~ll~~~--~ 397 (439)
T 3fro_A 331 VDFVIIPSYFEPFGLVALEAMCLGAIPIASAVGGLRDIITNE-TGILV----------KAGDPGELANAILKALELS--R 397 (439)
T ss_dssp CSEEEECBSCCSSCHHHHHHHHTTCEEEEESSTHHHHHCCTT-TCEEE----------CTTCHHHHHHHHHHHHHHT--T
T ss_pred CCEEEeCCCCCCccHHHHHHHHCCCCeEEcCCCCcceeEEcC-ceEEe----------CCCCHHHHHHHHHHHHhcC--H
Confidence 999999999999999999999999999999999999999887 99987 99999999999999999 6 4
Q ss_pred HHHHHHHHHHHH--hhCCchHHHHHHHHHHHHHHH
Q 007247 556 QALAEMMKNGMA--QDLSWKGPAKKWEETLLNLEV 588 (611)
Q Consensus 556 ~~~~~~~~~~~~--~~fsw~~~a~~~~~~~~~l~~ 588 (611)
+.+.++++++.. ++|||+.++++|+++|++++.
T Consensus 398 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 432 (439)
T 3fro_A 398 SDLSKFRENCKKRAMSFSWEKSAERYVKAYTGSID 432 (439)
T ss_dssp TTTHHHHHHHHHHHHTSCHHHHHHHHHHHHHTCSC
T ss_pred HHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHH
Confidence 555566666543 789999999999999999875
No 5
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=100.00 E-value=6.2e-41 Score=362.48 Aligned_cols=404 Identities=18% Similarity=0.238 Sum_probs=282.7
Q ss_pred CCccccccCCCceEEEEeeeecCcc-----ccccHHHHhccchHHHHhCCCeEEEEeecCCcccccCCCceEEEEEeCCe
Q 007247 74 GPSLMIVCGVGLNILFVGTEVAPWS-----KTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDK 148 (611)
Q Consensus 74 ~~~~~~~~~~~MkIl~v~~~~~P~~-----~~GG~~~~~~~La~~L~~~Gh~V~vit~~~~~~~~~~~~~~~~~~~~~~~ 148 (611)
++.....++++|||++|+.+|+|.. ..||.+.++..|+++|+++||+|+++++........
T Consensus 10 ~~~~~~~~~~mmkIl~i~~~~~p~~~~~~~~~GG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~-------------- 75 (438)
T 3c48_A 10 HSSGLVPRGSHMRVAMISMHTSPLQQPGTGDSGGMNVYILSTATELAKQGIEVDIYTRATRPSQGE-------------- 75 (438)
T ss_dssp ---------CCCEEEEECTTSCTTCC-------CHHHHHHHHHHHHHHTTCEEEEEEECCCGGGCS--------------
T ss_pred cccCcccCcchheeeeEEeeccccccCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEecCCCCCCcc--------------
Confidence 3445555677899999999888842 369999999999999999999999999874321110
Q ss_pred eeEEEEEEeeecCceEEEEeCccchhhhcCCCCccccCCCCCCCCcchHHHHHHHHHHHHHh-hHHhccCCCCCCCCCCC
Q 007247 149 IEKVRFFHCHKRGVDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEA-PRILNLNSNKYFSGPYG 227 (611)
Q Consensus 149 ~~~~~~~~~~~~gv~~~~i~~~~~~~~~~~~~~~~iy~~~~~~~~~~~~~r~~~~~~~~~~~-~~~l~~~~~~~~~~~~~ 227 (611)
. .....|+.++.+....+... . .......+..+...++.. ++... +
T Consensus 76 ---~---~~~~~~v~v~~~~~~~~~~~----------~------~~~~~~~~~~~~~~~~~~~~~~~~-----------~ 122 (438)
T 3c48_A 76 ---I---VRVAENLRVINIAAGPYEGL----------S------KEELPTQLAAFTGGMLSFTRREKV-----------T 122 (438)
T ss_dssp ---E---EEEETTEEEEEECCSCSSSC----------C------GGGGGGGHHHHHHHHHHHHHHHTC-----------C
T ss_pred ---c---ccccCCeEEEEecCCCcccc----------c------hhHHHHHHHHHHHHHHHHHHhccC-----------C
Confidence 0 01234666666643211100 0 000011112233333333 22221 4
Q ss_pred CCeEEEecCCccchHHHHHHHhccCCCCCCCceEEEEEecCccccccCcccccccCCCcccccccccccCCCCCCCCcch
Q 007247 228 EDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKI 307 (611)
Q Consensus 228 ~Dvivh~hd~~~~~~~~~l~~~~~~~~~~~~~k~v~~iH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (611)
|| |||+|++...+++..+... .++|+|+++|+........ +...... ......
T Consensus 123 ~D-iv~~~~~~~~~~~~~~~~~-------~~~p~v~~~h~~~~~~~~~------~~~~~~~-------------~~~~~~ 175 (438)
T 3c48_A 123 YD-LIHSHYWLSGQVGWLLRDL-------WRIPLIHTAHTLAAVKNSY------RDDSDTP-------------ESEARR 175 (438)
T ss_dssp CS-EEEEEHHHHHHHHHHHHHH-------HTCCEEEECSSCHHHHSCC----------CCH-------------HHHHHH
T ss_pred CC-EEEeCCccHHHHHHHHHHH-------cCCCEEEEecCCccccccc------ccccCCc-------------chHHHH
Confidence 99 9999987766666555554 3899999999754311000 0000000 000012
Q ss_pred hHhHHHhhhccEEEecCHHHHHHHHcCcCCCcccchhhhccceeEeeCCcccCCcCCCCccccccccCcchhhhccHHHH
Q 007247 308 NWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLK 387 (611)
Q Consensus 308 ~~~k~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~Ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 387 (611)
.+.+..++.+|.++++|+..++.+.+ .+|++.+ ++.+|+||+|...|.+.... ..
T Consensus 176 ~~~~~~~~~~d~ii~~s~~~~~~~~~--~~g~~~~------k~~vi~ngvd~~~~~~~~~~-----------------~~ 230 (438)
T 3c48_A 176 ICEQQLVDNADVLAVNTQEEMQDLMH--HYDADPD------RISVVSPGADVELYSPGNDR-----------------AT 230 (438)
T ss_dssp HHHHHHHHHCSEEEESSHHHHHHHHH--HHCCCGG------GEEECCCCCCTTTSCCC---------------------C
T ss_pred HHHHHHHhcCCEEEEcCHHHHHHHHH--HhCCChh------heEEecCCccccccCCcccc-----------------hh
Confidence 23466788999999999999999875 2455433 89999999999888765321 12
Q ss_pred HHHHHHhCCCCCCCCcEEEEEcCcccccCHHHHHHHHHhccc--C--CcEEEEEeC----CCchhHHHHHHHHHHCC--C
Q 007247 388 EALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--E--NVQIIVLGT----GKKPMEKQLEQLEILYP--E 457 (611)
Q Consensus 388 ~~~~~~~gl~~~~~~~~il~iGrl~~~Kg~d~li~a~~~l~~--~--~~~lvivG~----g~~~~~~~l~~l~~~~~--~ 457 (611)
..++++++++. +.++|+|+||+.++||++.+++|++++.+ + +++|+|+|+ |+ +.+.++++..+++ +
T Consensus 231 ~~~r~~~~~~~--~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~p~~~~~l~i~G~~~~~g~--~~~~l~~~~~~~~l~~ 306 (438)
T 3c48_A 231 ERSRRELGIPL--HTKVVAFVGRLQPFKGPQVLIKAVAALFDRDPDRNLRVIICGGPSGPNA--TPDTYRHMAEELGVEK 306 (438)
T ss_dssp HHHHHHTTCCS--SSEEEEEESCBSGGGCHHHHHHHHHHHHHHCTTCSEEEEEECCBC--------CHHHHHHHHTTCTT
T ss_pred hhhHHhcCCCC--CCcEEEEEeeecccCCHHHHHHHHHHHHhhCCCcceEEEEEeCCCCCCc--HHHHHHHHHHHcCCCC
Confidence 34788888863 45899999999999999999999999975 3 799999998 54 5566777766643 5
Q ss_pred ceEEecccChHHHHHHHHHccEEEeCCCCCCCcHHHHHHHHcCCceEEcCCcccccceecCcceEEecccccccccCCcc
Q 007247 458 KARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPV 537 (611)
Q Consensus 458 ~v~~~~~~~~~~~~~i~~~aDv~l~pS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~l~~~~~~~~~~v~~~ 537 (611)
++.+.+..+.+.+..+|+.||++++||..|+||++++|||+||+|||+++.||+.|++.++.+|+++ +++
T Consensus 307 ~v~~~g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~PvI~~~~~~~~e~i~~~~~g~~~----------~~~ 376 (438)
T 3c48_A 307 RIRFLDPRPPSELVAVYRAADIVAVPSFNESFGLVAMEAQASGTPVIAARVGGLPIAVAEGETGLLV----------DGH 376 (438)
T ss_dssp TEEEECCCCHHHHHHHHHHCSEEEECCSCCSSCHHHHHHHHTTCCEEEESCTTHHHHSCBTTTEEEE----------SSC
T ss_pred cEEEcCCCChHHHHHHHHhCCEEEECccccCCchHHHHHHHcCCCEEecCCCChhHHhhCCCcEEEC----------CCC
Confidence 7888888888888899999999999999999999999999999999999999999999999999987 899
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HhhCCchHHHHHHHHHHHHHHHcCCC
Q 007247 538 DVAAVSTTVRRALATYGTQALAEMMKNGM--AQDLSWKGPAKKWEETLLNLEVAGSE 592 (611)
Q Consensus 538 d~~~la~~i~~ll~~~~~~~~~~~~~~~~--~~~fsw~~~a~~~~~~~~~l~~~~~~ 592 (611)
|+++++++|.+++++ ++.+.++++++. .++|||+.++++|+++|++++.....
T Consensus 377 d~~~la~~i~~l~~~--~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 431 (438)
T 3c48_A 377 SPHAWADALATLLDD--DETRIRMGEDAVEHARTFSWAATAAQLSSLYNDAIANENV 431 (438)
T ss_dssp CHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred CHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhccc
Confidence 999999999999997 777777776663 23499999999999999999986543
No 6
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=100.00 E-value=2.9e-40 Score=364.18 Aligned_cols=411 Identities=15% Similarity=0.123 Sum_probs=287.4
Q ss_pred CceEEEEeeeecCcc---------ccccHHHHhccchHHHHhCCCeEEEEeecCCccc-ccCCCceEEEEEeCCeeeEEE
Q 007247 84 GLNILFVGTEVAPWS---------KTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYK-DAWDTDVVIELKVGDKIEKVR 153 (611)
Q Consensus 84 ~MkIl~v~~~~~P~~---------~~GG~~~~~~~La~~L~~~Gh~V~vit~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 153 (611)
+|||++|+..++|.. ..||.+.++.+|+++|+++||+|+|+++...... ..+... .
T Consensus 7 ~MkIl~i~~~~~P~~~~l~v~~~~~~GG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~-------------~- 72 (499)
T 2r60_A 7 IKHVAFLNPQGNFDPADSYWTEHPDFGGQLVYVKEVSLALAEMGVQVDIITRRIKDENWPEFSGE-------------I- 72 (499)
T ss_dssp CCEEEEECCSSCCCTTCTTTTSBTTBSHHHHHHHHHHHHHHHTTCEEEEEEECCCBTTBGGGCCS-------------E-
T ss_pred cceEEEEecCCCccccccccCCCCCCCCeeehHHHHHHHHHhcCCeEEEEeCCCCcccccchhhh-------------H-
Confidence 599999999887742 4699999999999999999999999998643211 110000 0
Q ss_pred EEEee--ecCceEEEEeCccchhhhcCCCCccccCCCCCCCCcchHHHHHHHHHHHHHhhHHhccCCCCCCCCCCCCCeE
Q 007247 154 FFHCH--KRGVDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVV 231 (611)
Q Consensus 154 ~~~~~--~~gv~~~~i~~~~~~~~~~~~~~~~iy~~~~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Dvi 231 (611)
... ..|+.++.+....... .. ....+..+..+...+.++++.... +|| |
T Consensus 73 --~~~~~~~gv~v~~~~~~~~~~----------~~------~~~~~~~~~~~~~~l~~~l~~~~~----------~~D-i 123 (499)
T 2r60_A 73 --DYYQETNKVRIVRIPFGGDKF----------LP------KEELWPYLHEYVNKIINFYREEGK----------FPQ-V 123 (499)
T ss_dssp --EECTTCSSEEEEEECCSCSSC----------CC------GGGCGGGHHHHHHHHHHHHHHHTC----------CCS-E
T ss_pred --HhccCCCCeEEEEecCCCcCC----------cC------HHHHHHHHHHHHHHHHHHHHhcCC----------CCC-E
Confidence 001 2466666654321100 00 000001111223334444444211 599 9
Q ss_pred EEecCCccchHHHHHHHhccCCCCCCCceEEEEEecCccccccCcccccccCCC-cccccccccccCCCCCCCCcchhHh
Q 007247 232 FVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLP-AQFKSSFDFIDGYNKPVRGRKINWM 310 (611)
Q Consensus 232 vh~hd~~~~~~~~~l~~~~~~~~~~~~~k~v~~iH~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (611)
||+|.+..++++..+... .++|+|+++|+..+..... +...+.. ..+.. .+. ......+.
T Consensus 124 vh~~~~~~~~~~~~~~~~-------~~~p~v~~~H~~~~~~~~~---~~~~~~~~~~~~~------~~~---~~~~~~~~ 184 (499)
T 2r60_A 124 VTTHYGDGGLAGVLLKNI-------KGLPFTFTGHSLGAQKMEK---LNVNTSNFKEMDE------RFK---FHRRIIAE 184 (499)
T ss_dssp EEEEHHHHHHHHHHHHHH-------HCCCEEEECSSCHHHHHHT---TCCCSTTSHHHHH------HHC---HHHHHHHH
T ss_pred EEEcCCcchHHHHHHHHh-------cCCcEEEEccCcccccchh---hccCCCCcchhhh------hHH---HHHHHHHH
Confidence 999987666666655554 3899999999764321100 0000000 00000 000 00011234
Q ss_pred HHHhhhccEEEecCHHHHHHHHcCcCCC-c----ccchhhhccceeEeeCCcccCCcCCCCccccccccCcchhhhccHH
Q 007247 311 KAGILESDMVLTVSPHYAQELVSGEDKG-V----ELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPL 385 (611)
Q Consensus 311 k~~~~~ad~vi~vS~~~~~~l~~~~~~g-~----~~~~~~~~~~i~vI~Ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~ 385 (611)
+..++.+|.++++|+..++.+.+...+| + .. .++.+||||+|...|.+... ..
T Consensus 185 ~~~~~~ad~vi~~S~~~~~~~~~~~~~g~~~~~~~~------~ki~vi~ngvd~~~~~~~~~----------------~~ 242 (499)
T 2r60_A 185 RLTMSYADKIIVSTSQERFGQYSHDLYRGAVNVEDD------DKFSVIPPGVNTRVFDGEYG----------------DK 242 (499)
T ss_dssp HHHHHHCSEEEESSHHHHHHTTTSGGGTTTCCTTCG------GGEEECCCCBCTTTSSSCCC----------------HH
T ss_pred HHHHhcCCEEEECCHHHHHHHHhhhcccccccccCC------CCeEEECCCcChhhcCccch----------------hh
Confidence 6678899999999999999887520034 3 32 38999999999988876532 12
Q ss_pred HHHHHHHHhC-----CCCCCCCcEEEEEcCcccccCHHHHHHHHHhccc--C-CcEEEEEeCCCc-------------hh
Q 007247 386 LKEALQAEVG-----LPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--E-NVQIIVLGTGKK-------------PM 444 (611)
Q Consensus 386 ~~~~~~~~~g-----l~~~~~~~~il~iGrl~~~Kg~d~li~a~~~l~~--~-~~~lvivG~g~~-------------~~ 444 (611)
.+..+++++| ++. +.++|+|+||+.++||++.+++|++++.+ + .++|+|+|+++. .|
T Consensus 243 ~~~~~r~~~~~~~~~~~~--~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~~~~l~i~G~~~~~~~~y~~l~~~~~~y 320 (499)
T 2r60_A 243 IKAKITKYLERDLGSERM--ELPAIIASSRLDQKKNHYGLVEAYVQNKELQDKANLVLTLRGIENPFEDYSRAGQEEKEI 320 (499)
T ss_dssp HHHHHHHHHHHHSCGGGT--TSCEEEECSCCCGGGCHHHHHHHHHTCHHHHHHCEEEEEESSCSBTTTBCTTSCHHHHHH
T ss_pred hHHHHHHHhcccccccCC--CCcEEEEeecCccccCHHHHHHHHHHHHHhCCCceEEEEECCCCCcccccccccccchHH
Confidence 3456777777 653 45899999999999999999999999975 2 468999998321 12
Q ss_pred HHHHHHHHHHCC--CceEEecccChHHHHHHHHHc----cEEEeCCCCCCCcHHHHHHHHcCCceEEcCCcccccceecC
Q 007247 445 EKQLEQLEILYP--EKARGVAKFNIPLAHMIIAGA----DFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEG 518 (611)
Q Consensus 445 ~~~l~~l~~~~~--~~v~~~~~~~~~~~~~i~~~a----Dv~l~pS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g 518 (611)
.+.++++..+++ +++.+.+..+.+.+..+|+.| |++|+||.+|+||++++|||+||+|||+|+.||+.|++.++
T Consensus 321 ~~~l~~~~~~~~l~~~V~~~G~v~~~~~~~~~~~a~~~~dv~v~pS~~Eg~~~~~lEAma~G~PvI~s~~~g~~e~v~~~ 400 (499)
T 2r60_A 321 LGKIIELIDNNDCRGKVSMFPLNSQQELAGCYAYLASKGSVFALTSFYEPFGLAPVEAMASGLPAVVTRNGGPAEILDGG 400 (499)
T ss_dssp HHHHHHHHHHTTCBTTEEEEECCSHHHHHHHHHHHHHTTCEEEECCSCBCCCSHHHHHHHTTCCEEEESSBHHHHHTGGG
T ss_pred HHHHHHHHHhcCCCceEEECCCCCHHHHHHHHHhcCcCCCEEEECcccCCCCcHHHHHHHcCCCEEEecCCCHHHHhcCC
Confidence 677888877654 568888888888888999999 99999999999999999999999999999999999999999
Q ss_pred cceEEecccccccccCCccCHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HhhCCchHHHHHHHHHHHHHHHcCCC
Q 007247 519 FTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGM---AQDLSWKGPAKKWEETLLNLEVAGSE 592 (611)
Q Consensus 519 ~~G~l~~~~~~~~~~v~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~---~~~fsw~~~a~~~~~~~~~l~~~~~~ 592 (611)
.+|+++ +++|+++++++|.+++++ ++.+.++++++. .++|||+.++++|+++|++++.....
T Consensus 401 ~~g~l~----------~~~d~~~la~~i~~ll~~--~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~y~~~~~~~~~ 465 (499)
T 2r60_A 401 KYGVLV----------DPEDPEDIARGLLKAFES--EETWSAYQEKGKQRVEERYTWQETARGYLEVIQEIADRKDE 465 (499)
T ss_dssp TSSEEE----------CTTCHHHHHHHHHHHHSC--HHHHHHHHHHHHHHHHHHSBHHHHHHHHHHHHHHHHHC---
T ss_pred ceEEEe----------CCCCHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhhh
Confidence 999987 999999999999999997 777777776663 46699999999999999999986543
No 7
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=100.00 E-value=4.3e-40 Score=349.88 Aligned_cols=367 Identities=22% Similarity=0.276 Sum_probs=279.3
Q ss_pred CCCceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEeecCCccc-ccCCCceEEEEEeCCeeeEEEEEEeeec
Q 007247 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYK-DAWDTDVVIELKVGDKIEKVRFFHCHKR 160 (611)
Q Consensus 82 ~~~MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (611)
|++|||++|+..|+|. .||.+.++..|+++| +||+|+|+++..+... ..++ ...
T Consensus 2 ~~~mkIl~v~~~~~p~--~gG~~~~~~~l~~~L--~g~~v~v~~~~~~~~~~~~~~---------------------~~~ 56 (394)
T 3okp_A 2 SASRKTLVVTNDFPPR--IGGIQSYLRDFIATQ--DPESIVVFASTQNAEEAHAYD---------------------KTL 56 (394)
T ss_dssp --CCCEEEEESCCTTS--CSHHHHHHHHHHTTS--CGGGEEEEEECSSHHHHHHHH---------------------TTC
T ss_pred CCCceEEEEeCccCCc--cchHHHHHHHHHHHh--cCCeEEEEECCCCccchhhhc---------------------ccc
Confidence 5679999999988885 899999999999999 6999999998754321 1000 112
Q ss_pred CceEEEEeCccchhhhcCCCCccccCCCCCCCCcchHHHHHHHHHHHHHhhHHhccCCCCCCCCCCCCCeEEEecCCcc-
Q 007247 161 GVDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHT- 239 (611)
Q Consensus 161 gv~~~~i~~~~~~~~~~~~~~~~iy~~~~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Dvivh~hd~~~- 239 (611)
|+.++.+....++. . ..+...+.++++.. +|| +||+|....
T Consensus 57 ~~~~~~~~~~~~~~--------------------~-----~~~~~~l~~~~~~~------------~~D-vv~~~~~~~~ 98 (394)
T 3okp_A 57 DYEVIRWPRSVMLP--------------------T-----PTTAHAMAEIIRER------------EID-NVWFGAAAPL 98 (394)
T ss_dssp SSEEEEESSSSCCS--------------------C-----HHHHHHHHHHHHHT------------TCS-EEEESSCTTG
T ss_pred ceEEEEcccccccc--------------------c-----hhhHHHHHHHHHhc------------CCC-EEEECCcchH
Confidence 44454443221111 0 01223333444433 699 889987554
Q ss_pred chHHHHHHHhccCCCCCCCc-eEEEEEecCccccccCcccccccCCCcccccccccccCCCCCCCCcchhHhHHHhhhcc
Q 007247 240 SLIPCYLKTMYKPKGMYKSA-KVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESD 318 (611)
Q Consensus 240 ~~~~~~l~~~~~~~~~~~~~-k~v~~iH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad 318 (611)
.++...++. .++ ++|+++|+...... .......+++..++.+|
T Consensus 99 ~~~~~~~~~--------~~~~~~i~~~h~~~~~~~----------------------------~~~~~~~~~~~~~~~~d 142 (394)
T 3okp_A 99 ALMAGTAKQ--------AGASKVIASTHGHEVGWS----------------------------MLPGSRQSLRKIGTEVD 142 (394)
T ss_dssp GGGHHHHHH--------TTCSEEEEECCSTHHHHT----------------------------TSHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHh--------cCCCcEEEEeccchhhhh----------------------------hcchhhHHHHHHHHhCC
Confidence 344444443 255 58999996432000 00012345677788999
Q ss_pred EEEecCHHHHHHHHcCcCCCcccchhhhccceeEeeCCcccCCcCCCCccccccccCcchhhhccHHHHHHHHHHhCCCC
Q 007247 319 MVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPV 398 (611)
Q Consensus 319 ~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~Ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~ 398 (611)
.++++|+..++.+.+. ++. ..++.+|+||+|.+.|.|.. +..+..+++++|++.
T Consensus 143 ~ii~~s~~~~~~~~~~--~~~-------~~~~~vi~ngv~~~~~~~~~-----------------~~~~~~~~~~~~~~~ 196 (394)
T 3okp_A 143 VLTYISQYTLRRFKSA--FGS-------HPTFEHLPSGVDVKRFTPAT-----------------PEDKSATRKKLGFTD 196 (394)
T ss_dssp EEEESCHHHHHHHHHH--HCS-------SSEEEECCCCBCTTTSCCCC-----------------HHHHHHHHHHTTCCT
T ss_pred EEEEcCHHHHHHHHHh--cCC-------CCCeEEecCCcCHHHcCCCC-----------------chhhHHHHHhcCCCc
Confidence 9999999999998862 221 23899999999999887742 233677889999874
Q ss_pred CCCCcEEEEEcCcccccCHHHHHHHHHhccc--CCcEEEEEeCCCchhHHHHHHHHHHCCCceEEecccChHHHHHHHHH
Q 007247 399 DRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAG 476 (611)
Q Consensus 399 ~~~~~~il~iGrl~~~Kg~d~li~a~~~l~~--~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~i~~~ 476 (611)
+.++|+|+||+.+.||++.+++|++++.+ ++++|+|+|+|+ ..+.++++.....+++.+.+..+.+.+..+++.
T Consensus 197 --~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~--~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~~~ 272 (394)
T 3okp_A 197 --TTPVIACNSRLVPRKGQDSLIKAMPQVIAARPDAQLLIVGSGR--YESTLRRLATDVSQNVKFLGRLEYQDMINTLAA 272 (394)
T ss_dssp --TCCEEEEESCSCGGGCHHHHHHHHHHHHHHSTTCEEEEECCCT--THHHHHHHTGGGGGGEEEEESCCHHHHHHHHHH
T ss_pred --CceEEEEEeccccccCHHHHHHHHHHHHhhCCCeEEEEEcCch--HHHHHHHHHhcccCeEEEcCCCCHHHHHHHHHh
Confidence 45899999999999999999999999976 699999999987 567777777555577999988888889899999
Q ss_pred ccEEEeCCCC-------CCCcHHHHHHHHcCCceEEcCCcccccceecCcceEEecccccccccCCccCHHHHHHHHHHH
Q 007247 477 ADFILIPSRF-------EPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRA 549 (611)
Q Consensus 477 aDv~l~pS~~-------E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~~la~~i~~l 549 (611)
||++++||.+ |+||++++|||++|+|||+++.||..|++.++ +|+++ +++|+++++++|.++
T Consensus 273 ad~~v~ps~~~~~~~~~e~~~~~~~Ea~a~G~PvI~~~~~~~~e~i~~~-~g~~~----------~~~d~~~l~~~i~~l 341 (394)
T 3okp_A 273 ADIFAMPARTRGGGLDVEGLGIVYLEAQACGVPVIAGTSGGAPETVTPA-TGLVV----------EGSDVDKLSELLIEL 341 (394)
T ss_dssp CSEEEECCCCBGGGTBCCSSCHHHHHHHHTTCCEEECSSTTGGGGCCTT-TEEEC----------CTTCHHHHHHHHHHH
T ss_pred CCEEEecCccccccccccccCcHHHHHHHcCCCEEEeCCCChHHHHhcC-CceEe----------CCCCHHHHHHHHHHH
Confidence 9999999999 99999999999999999999999999999999 99987 899999999999999
Q ss_pred HHhcCHHHHHHHHHHHH---HhhCCchHHHHHHHHHHHHHHHcC
Q 007247 550 LATYGTQALAEMMKNGM---AQDLSWKGPAKKWEETLLNLEVAG 590 (611)
Q Consensus 550 l~~~~~~~~~~~~~~~~---~~~fsw~~~a~~~~~~~~~l~~~~ 590 (611)
+++ ++.+.++++++. .++|||+.++++|+++|+++....
T Consensus 342 ~~~--~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~r~~ 383 (394)
T 3okp_A 342 LDD--PIRRAAMGAAGRAHVEAEWSWEIMGERLTNILQSEPRKL 383 (394)
T ss_dssp HTC--HHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHSCCC--
T ss_pred HhC--HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccCc
Confidence 997 777777776663 567999999999999999887544
No 8
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=100.00 E-value=4e-39 Score=369.18 Aligned_cols=427 Identities=15% Similarity=0.158 Sum_probs=279.6
Q ss_pred CceEEEEeeeec---------CccccccHHHHhcc--------chHHHHhCCCeEE----EEeecCCcccccCCCceEEE
Q 007247 84 GLNILFVGTEVA---------PWSKTGGLGDVLGG--------LPPALAANGHRVM----TIAPRYDQYKDAWDTDVVIE 142 (611)
Q Consensus 84 ~MkIl~v~~~~~---------P~~~~GG~~~~~~~--------La~~L~~~Gh~V~----vit~~~~~~~~~~~~~~~~~ 142 (611)
.|+|++|+.+.. |. +||...++.+ |+++|+++||+|+ |+|...+.. ..++.....+
T Consensus 278 ~~~i~~is~hg~~~~~~~lG~~d--tGGq~vyV~e~~~al~~ela~~L~~~G~~V~~~V~v~Tr~~~~~-~g~~y~~~~e 354 (816)
T 3s28_A 278 VFNVVILSPHGYFAQDNVLGYPD--TGGQVVYILDQVRALEIEMLQRIKQQGLNIKPRILILTRLLPDA-VGTTCGERLE 354 (816)
T ss_dssp CCEEEEECCSSCCCSSSCTTSTT--CSHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECCTTC-TTSSTTSSEE
T ss_pred eeEEEEEcCCcccCccccCCCCC--CCCceeeHHHHHHHHHHHHHHHHHHCCCccceeeEEEeCCCCCC-CCCccCCcce
Confidence 589999999866 65 9999999984 6777788999886 998875432 1111111111
Q ss_pred EEeCCeeeEEEEEEeeecCceEEEEeCcc---chhhhcCCCCccccCCCCCCCCcchHHHHHHHH-HHHHHhhHHhccCC
Q 007247 143 LKVGDKIEKVRFFHCHKRGVDRVFVDHPW---FLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLC-QAALEAPRILNLNS 218 (611)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~gv~~~~i~~~~---~~~~~~~~~~~~iy~~~~~~~~~~~~~r~~~~~-~~~~~~~~~l~~~~ 218 (611)
... ..+|+.++.+.... ++.+ |.. ...++. .+..|. ..+..+.+...
T Consensus 355 ~i~------------~~~gv~I~RvP~~~~~g~l~~-~l~-k~~L~~------------~L~~F~~~~l~~il~~~~--- 405 (816)
T 3s28_A 355 RVY------------DSEYCDILRVPFRTEKGIVRK-WIS-RFEVWP------------YLETYTEDAAVELSKELN--- 405 (816)
T ss_dssp ECT------------TCSSEEEEEECEEETTEEECS-CCC-TTTCGG------------GHHHHHHHHHHHHHHHCS---
T ss_pred eec------------CcCCeEEEEecCCCccccccc-ccc-HHHHHH------------HHHHHHHHHHHHHHHhcC---
Confidence 100 01356666553211 0010 000 011111 112233 33334444332
Q ss_pred CCCCCCCCCCCeEEEecCCccchHHHHHHHhccCCCCCCCceEEEEEecCccccccCcccccccCCCcccccccccccCC
Q 007247 219 NKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGY 298 (611)
Q Consensus 219 ~~~~~~~~~~Dvivh~hd~~~~~~~~~l~~~~~~~~~~~~~k~v~~iH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (611)
.+|| |||+|.|.+++++..++... ++|+|+|.|+........ . +...... ...+
T Consensus 406 -------~~PD-VIHsH~~~sglva~llar~~-------gvP~V~T~Hsl~~~k~~~-~-----~~~~~~~-----~~~y 459 (816)
T 3s28_A 406 -------GKPD-LIIGNYSDGNLVASLLAHKL-------GVTQCTIAHALEKTKYPD-S-----DIYWKKL-----DDKY 459 (816)
T ss_dssp -------SCCS-EEEEEHHHHHHHHHHHHHHH-------TCCEEEECSCCHHHHSTT-T-----TTTHHHH-----HHHH
T ss_pred -------CCCe-EEEeCCchHHHHHHHHHHHc-------CCCEEEEEeccccccccc-c-----cchhhhH-----HHHH
Confidence 2599 99999998888888887764 899999999764422110 0 0000000 0000
Q ss_pred CCCCCCcchhHhHHHhhhccEEEecCHHHHHHHHcCc-CCCcc----cc---------hhhhccceeEeeCCcccCCcCC
Q 007247 299 NKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGE-DKGVE----LD---------NIIRKTGIKGIVNGMDVQEWNP 364 (611)
Q Consensus 299 ~~~~~~~~~~~~k~~~~~ad~vi~vS~~~~~~l~~~~-~~g~~----~~---------~~~~~~~i~vI~Ngvd~~~~~p 364 (611)
. ....+...+..+..||.|+++|+..++.+.... .++.. +. ... ..++.+||||+|.+.|.|
T Consensus 460 ~---~~~r~~aE~~~l~~AD~VIa~S~~~~~~l~~~~~~y~~~~~~~~p~Lyr~~~gI~~~-~~ki~VIpnGVD~~~F~P 535 (816)
T 3s28_A 460 H---FSCQFTADIFAMNHTDFIITSTFQEIAGSKETVGQYESHTAFTLPGLYRVVHGIDVF-DPKFNIVSPGADMSIYFP 535 (816)
T ss_dssp C---HHHHHHHHHHHHHHSSEEEESCHHHHHCCSSSCCTTGGGSSEEETTTEEEEESCCTT-CTTEEECCCCCCTTTSCC
T ss_pred H---HHHHHHHHHHHHHhCCEEEECCHHHHHHHHHHHHHhhhhhccccchhhhcccccccC-CCCEEEECCCcCHHHcCc
Confidence 0 000112244578899999999999998643210 11110 00 001 128999999999999988
Q ss_pred CCccc--cccccCcchhhhccHHHHHHHHHHhCCCCCCCCcEEEEEcCcccccCHHHHHHHHHhccc--CCcEEEEEeCC
Q 007247 365 LTDKY--IGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTG 440 (611)
Q Consensus 365 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~il~iGrl~~~Kg~d~li~a~~~l~~--~~~~lvivG~g 440 (611)
...+. +...++.. ..........++.+|+..+++.++|+|+||+.+.||++.+++|+.++.+ ++++|+|+|+|
T Consensus 536 ~~~~~~Rl~~~~~~i---~~~l~~p~~~r~~lg~l~~~~~~vIl~vGRl~~~KGid~LIeA~~~L~~~~~~v~LvIvG~g 612 (816)
T 3s28_A 536 YTEEKRRLTKFHSEI---EELLYSDVENKEHLCVLKDKKKPILFTMARLDRVKNLSGLVEWYGKNTRLRELANLVVVGGD 612 (816)
T ss_dssp TTCTTTCCGGGHHHH---HHHHHCSCCBTTEESCBSCTTSCEEEEECCCCTTTTHHHHHHHHHHCHHHHHHCEEEEECCC
T ss_pred cchhhhhhhhccccc---cccccchhhHHHHhcccCCCCCeEEEEEccCcccCCHHHHHHHHHHHHhhCCCeEEEEEeCC
Confidence 65321 00000000 0000001122344566445677999999999999999999999999976 68999999998
Q ss_pred Cc---------hhHHHHHHHHHHCC--CceEEecccC----hHHHHHHHH-HccEEEeCCCCCCCcHHHHHHHHcCCceE
Q 007247 441 KK---------PMEKQLEQLEILYP--EKARGVAKFN----IPLAHMIIA-GADFILIPSRFEPCGLIQLHAMRYGTVPI 504 (611)
Q Consensus 441 ~~---------~~~~~l~~l~~~~~--~~v~~~~~~~----~~~~~~i~~-~aDv~l~pS~~E~~gl~~lEAma~G~PvI 504 (611)
++ .+.+.++++..+++ +++.+.+... .+.+..+++ .||++++||.+|+||++++|||+||+|||
T Consensus 613 ~~~~~~~~e~~~~~~~L~~li~~lgL~~~V~flG~~~~~v~~~eL~~~~~~aaDvfV~PS~~EgfglvllEAMA~G~PVI 692 (816)
T 3s28_A 613 RRKESKDNEEKAEMKKMYDLIEEYKLNGQFRWISSQMDRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTF 692 (816)
T ss_dssp TTSCCCCHHHHHHHHHHHHHHHHTTCBBBEEEECCCCCHHHHHHHHHHHHHTTCEEEECCSCBSSCHHHHHHHHTTCCEE
T ss_pred CcccccchhhHHHHHHHHHHHHHcCCCCcEEEccCccccCCHHHHHHHHHhcCeEEEECCCccCccHHHHHHHHcCCCEE
Confidence 72 25566777777665 5677776433 355556777 68999999999999999999999999999
Q ss_pred EcCCcccccceecCcceEEecccccccccCCccCHHHHHHHHHHHH----HhcCHHHHHHHHHHHH---HhhCCchHHHH
Q 007247 505 VASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRAL----ATYGTQALAEMMKNGM---AQDLSWKGPAK 577 (611)
Q Consensus 505 ~s~~gg~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~~la~~i~~ll----~~~~~~~~~~~~~~~~---~~~fsw~~~a~ 577 (611)
+|+.||+.|++.++.+|+++ +++|+++++++|.+++ .+ ++.+.++++++. .++|||+.+++
T Consensus 693 asd~GG~~EiV~dg~~Gllv----------~p~D~e~LA~aI~~lL~~Ll~d--~~~~~~m~~~ar~~a~~~fSwe~~a~ 760 (816)
T 3s28_A 693 ATCKGGPAEIIVHGKSGFHI----------DPYHGDQAADTLADFFTKCKED--PSHWDEISKGGLQRIEEKYTWQIYSQ 760 (816)
T ss_dssp EESSBTHHHHCCBTTTBEEE----------CTTSHHHHHHHHHHHHHHHHHC--THHHHHHHHHHHHHHHHSCCHHHHHH
T ss_pred EeCCCChHHHHccCCcEEEe----------CCCCHHHHHHHHHHHHHHhccC--HHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 99999999999999999987 9999999999998777 65 667777777764 48899999999
Q ss_pred HHHHHHHHHH
Q 007247 578 KWEETLLNLE 587 (611)
Q Consensus 578 ~~~~~~~~l~ 587 (611)
+|+++|+.+.
T Consensus 761 ~ll~lY~~~g 770 (816)
T 3s28_A 761 RLLTLTGVYG 770 (816)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999999765
No 9
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=100.00 E-value=5.4e-38 Score=335.05 Aligned_cols=370 Identities=18% Similarity=0.180 Sum_probs=262.1
Q ss_pred CceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEeecCCcccccCCCceEEEEEeCCeeeEEEEEEeeecCce
Q 007247 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVD 163 (611)
Q Consensus 84 ~MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~ 163 (611)
.|+.-+....| |. .||.+.++..|+++|+++||+|+++++..+.... ...+|+.
T Consensus 13 ~~~~~~~~~~~-p~--~GG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~-----------------------~~~~~i~ 66 (394)
T 2jjm_A 13 HMKLKIGITCY-PS--VGGSGVVGTELGKQLAERGHEIHFITSGLPFRLN-----------------------KVYPNIY 66 (394)
T ss_dssp --CCEEEEECC-C----CHHHHHHHHHHHHHHHTTCEEEEECSSCC---------------------------CCCTTEE
T ss_pred hheeeeehhcC-CC--CCCHHHHHHHHHHHHHhCCCEEEEEeCCCCCccc-----------------------ccCCceE
Confidence 46666666665 53 7999999999999999999999999976321110 0112333
Q ss_pred EEEEeCccchhhhcCCCCccccCCCCCCCCcchHHHHHHHHHHHHHhhHHhccCCCCCCCCCCCCCeEEEecCCccch-H
Q 007247 164 RVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSL-I 242 (611)
Q Consensus 164 ~~~i~~~~~~~~~~~~~~~~iy~~~~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Dvivh~hd~~~~~-~ 242 (611)
+..+..+.+.. +. +.. .. ..+...+.++++.. +|| |||+|.+.... .
T Consensus 67 ~~~~~~~~~~~----------~~------~~~--~~-~~~~~~l~~~l~~~------------~~D-vv~~~~~~~~~~~ 114 (394)
T 2jjm_A 67 FHEVTVNQYSV----------FQ------YPP--YD-LALASKMAEVAQRE------------NLD-ILHVHYAIPHAIC 114 (394)
T ss_dssp EECCCCC--------------CC------SCC--HH-HHHHHHHHHHHHHH------------TCS-EEEECSSTTHHHH
T ss_pred EEecccccccc----------cc------ccc--cc-HHHHHHHHHHHHHc------------CCC-EEEEcchhHHHHH
Confidence 22222111000 00 000 01 11223334444443 699 99999755433 3
Q ss_pred HHHHHHhccCCCCCCCceEEEEEecCccccccCcccccccCCCcccccccccccCCCCCCCCcchhHhHHHhhhccEEEe
Q 007247 243 PCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLT 322 (611)
Q Consensus 243 ~~~l~~~~~~~~~~~~~k~v~~iH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~vi~ 322 (611)
....+.... .++|+|+++|+.... . .+. ......+++..++.+|.+++
T Consensus 115 ~~~~~~~~~-----~~~p~v~~~h~~~~~-~--------~~~------------------~~~~~~~~~~~~~~ad~ii~ 162 (394)
T 2jjm_A 115 AYLAKQMIG-----ERIKIVTTLHGTDIT-V--------LGS------------------DPSLNNLIRFGIEQSDVVTA 162 (394)
T ss_dssp HHHHHHHTT-----TCSEEEEECCHHHHH-T--------TTT------------------CTTTHHHHHHHHHHSSEEEE
T ss_pred HHHHHHhhc-----CCCCEEEEEecCccc-c--------cCC------------------CHHHHHHHHHHHhhCCEEEE
Confidence 333333321 268999999964320 0 000 00123456777889999999
Q ss_pred cCHHHHHHHHcCcCCCcccchhhhccceeEeeCCcccCCcCCCCccccccccCcchhhhccHHHHHHHHHHhCCCCCCCC
Q 007247 323 VSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNI 402 (611)
Q Consensus 323 vS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~Ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~ 402 (611)
+|+..++.+.+. ++. ..++.+||||+|...|.+.. ...++++++++. +.
T Consensus 163 ~s~~~~~~~~~~--~~~-------~~~~~vi~ngv~~~~~~~~~--------------------~~~~~~~~~~~~--~~ 211 (394)
T 2jjm_A 163 VSHSLINETHEL--VKP-------NKDIQTVYNFIDERVYFKRD--------------------MTQLKKEYGISE--SE 211 (394)
T ss_dssp SCHHHHHHHHHH--TCC-------SSCEEECCCCCCTTTCCCCC--------------------CHHHHHHTTCC-----
T ss_pred CCHHHHHHHHHh--hCC-------cccEEEecCCccHHhcCCcc--------------------hHHHHHHcCCCC--CC
Confidence 999999998852 222 13899999999998887653 245677888753 45
Q ss_pred cEEEEEcCcccccCHHHHHHHHHhccc-CCcEEEEEeCCCchhHHHHHHHHHHCC--CceEEecccChHHHHHHHHHccE
Q 007247 403 PVIGFIGRLEEQKGSDILAAAIPHFIK-ENVQIIVLGTGKKPMEKQLEQLEILYP--EKARGVAKFNIPLAHMIIAGADF 479 (611)
Q Consensus 403 ~~il~iGrl~~~Kg~d~li~a~~~l~~-~~~~lvivG~g~~~~~~~l~~l~~~~~--~~v~~~~~~~~~~~~~i~~~aDv 479 (611)
++|+|+||+.++||++.+++|++++.+ .+++|+|+|+|+ ..+.++++..+++ +++.+.+. .+.+..+++.||+
T Consensus 212 ~~i~~~G~~~~~Kg~~~li~a~~~l~~~~~~~l~i~G~g~--~~~~l~~~~~~~~l~~~v~~~g~--~~~~~~~~~~adv 287 (394)
T 2jjm_A 212 KILIHISNFRKVKRVQDVVQAFAKIVTEVDAKLLLVGDGP--EFCTILQLVKNLHIEDRVLFLGK--QDNVAELLAMSDL 287 (394)
T ss_dssp CEEEEECCCCGGGTHHHHHHHHHHHHHSSCCEEEEECCCT--THHHHHHHHHTTTCGGGBCCCBS--CSCTHHHHHTCSE
T ss_pred eEEEEeeccccccCHHHHHHHHHHHHhhCCCEEEEECCch--HHHHHHHHHHHcCCCCeEEEeCc--hhhHHHHHHhCCE
Confidence 899999999999999999999999976 579999999987 4566777776654 45666653 3445679999999
Q ss_pred EEeCCCCCCCcHHHHHHHHcCCceEEcCCcccccceecCcceEEecccccccccCCccCHHHHHHHHHHHHHhcCHHHHH
Q 007247 480 ILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALA 559 (611)
Q Consensus 480 ~l~pS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~~la~~i~~ll~~~~~~~~~ 559 (611)
+++||.+|+||++++|||+||+|||+++.||+.|++.++.+|+++ +++|+++++++|.+++++ ++.+.
T Consensus 288 ~v~ps~~e~~~~~~~EAma~G~PvI~~~~~~~~e~v~~~~~g~~~----------~~~d~~~la~~i~~l~~~--~~~~~ 355 (394)
T 2jjm_A 288 MLLLSEKESFGLVLLEAMACGVPCIGTRVGGIPEVIQHGDTGYLC----------EVGDTTGVADQAIQLLKD--EELHR 355 (394)
T ss_dssp EEECCSCCSCCHHHHHHHHTTCCEEEECCTTSTTTCCBTTTEEEE----------CTTCHHHHHHHHHHHHHC--HHHHH
T ss_pred EEeccccCCCchHHHHHHhcCCCEEEecCCChHHHhhcCCceEEe----------CCCCHHHHHHHHHHHHcC--HHHHH
Confidence 999999999999999999999999999999999999999999987 899999999999999997 77777
Q ss_pred HHHHHHH---HhhCCchHHHHHHHHHHHHHHHcC
Q 007247 560 EMMKNGM---AQDLSWKGPAKKWEETLLNLEVAG 590 (611)
Q Consensus 560 ~~~~~~~---~~~fsw~~~a~~~~~~~~~l~~~~ 590 (611)
++++++. .++|||+.++++|+++|++++...
T Consensus 356 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 389 (394)
T 2jjm_A 356 NMGERARESVYEQFRSEKIVSQYETIYYDVLRDD 389 (394)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhh
Confidence 7776664 489999999999999999987643
No 10
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=100.00 E-value=1.1e-37 Score=332.88 Aligned_cols=368 Identities=18% Similarity=0.196 Sum_probs=263.4
Q ss_pred cccCCCceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEeecCCcccccCCCceEEEEEeCCeeeEEEEEEee
Q 007247 79 IVCGVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCH 158 (611)
Q Consensus 79 ~~~~~~MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (611)
....++|||+|++..++| ..||.+.++..|+++|+++||+|+++++...... +.....
T Consensus 15 ~~~~~~MkIl~i~~~~~~--~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~--~~~~~~------------------ 72 (406)
T 2gek_A 15 VPRGSHMRIGMVCPYSFD--VPGGVQSHVLQLAEVLRDAGHEVSVLAPASPHVK--LPDYVV------------------ 72 (406)
T ss_dssp ------CEEEEECSSCTT--SCCHHHHHHHHHHHHHHHTTCEEEEEESCCTTSC--CCTTEE------------------
T ss_pred ccCCCcceEEEEeccCCC--CCCcHHHHHHHHHHHHHHCCCeEEEEecCCcccc--CCcccc------------------
Confidence 334457999999976555 3699999999999999999999999998743220 000000
Q ss_pred ecCceEEEEeCccchhhhcCCCCccccCCCCCCCCcchHHHHHHHHHHHHHhhHHhccCCCCCCCCCCCCCeEEEecCCc
Q 007247 159 KRGVDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWH 238 (611)
Q Consensus 159 ~~gv~~~~i~~~~~~~~~~~~~~~~iy~~~~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Dvivh~hd~~ 238 (611)
..| .++.+....... .+. +. ..+...+.++++.. +|| +||+|.+.
T Consensus 73 ~~~-~~~~~~~~~~~~--------~~~-------~~------~~~~~~l~~~l~~~------------~~D-ii~~~~~~ 117 (406)
T 2gek_A 73 SGG-KAVPIPYNGSVA--------RLR-------FG------PATHRKVKKWIAEG------------DFD-VLHIHEPN 117 (406)
T ss_dssp ECC-CCC---------------------------CC------HHHHHHHHHHHHHH------------CCS-EEEEECCC
T ss_pred cCC-cEEeccccCCcc--------ccc-------cc------HHHHHHHHHHHHhc------------CCC-EEEECCcc
Confidence 001 111110000000 000 00 01123333444433 599 89998877
Q ss_pred cchHHHHHHHhccCCCCCCCceEEEEEecCccccccCcccccccCCCcccccccccccCCCCCCCCcchhHhHHHhhhcc
Q 007247 239 TSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESD 318 (611)
Q Consensus 239 ~~~~~~~l~~~~~~~~~~~~~k~v~~iH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad 318 (611)
.......+... .++|+|+++|+...... .. .....+++..+..+|
T Consensus 118 ~~~~~~~~~~~-------~~~~~i~~~h~~~~~~~--------------~~--------------~~~~~~~~~~~~~~d 162 (406)
T 2gek_A 118 APSLSMLALQA-------AEGPIVATFHTSTTKSL--------------TL--------------SVFQGILRPYHEKII 162 (406)
T ss_dssp SSSHHHHHHHH-------EESSEEEEECCCCCSHH--------------HH--------------HHHHSTTHHHHTTCS
T ss_pred chHHHHHHHHh-------cCCCEEEEEcCcchhhh--------------hH--------------HHHHHHHHHHHhhCC
Confidence 65555454443 37899999997432110 00 011123346678999
Q ss_pred EEEecCHHHHHHHHcCcCCCcccchhhhccceeEeeCCcccCCcCCCCccccccccCcchhhhccHHHHHHHHHHhCCCC
Q 007247 319 MVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPV 398 (611)
Q Consensus 319 ~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~Ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~ 398 (611)
.++++|+..++.+.+. ++. .++ +|+||+|...+.+.... .+++
T Consensus 163 ~ii~~s~~~~~~~~~~--~~~--------~~~-vi~~~v~~~~~~~~~~~-------------------------~~~~- 205 (406)
T 2gek_A 163 GRIAVSDLARRWQMEA--LGS--------DAV-EIPNGVDVASFADAPLL-------------------------DGYP- 205 (406)
T ss_dssp EEEESSHHHHHHHHHH--HSS--------CEE-ECCCCBCHHHHHTCCCC-------------------------TTCS-
T ss_pred EEEECCHHHHHHHHHh--cCC--------CcE-EecCCCChhhcCCCchh-------------------------hhcc-
Confidence 9999999999988752 222 278 99999998776554311 0111
Q ss_pred CCCCcEEEEEcCc-ccccCHHHHHHHHHhccc--CCcEEEEEeCCCchhHHHHHHHHHHCCCceEEecccChHHHHHHHH
Q 007247 399 DRNIPVIGFIGRL-EEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA 475 (611)
Q Consensus 399 ~~~~~~il~iGrl-~~~Kg~d~li~a~~~l~~--~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~i~~ 475 (611)
++.++|+|+||+ .+.||++.+++|++++.+ ++++|+|+|+|+. +.++++..++.+++.+.+..+.+.+..+|+
T Consensus 206 -~~~~~i~~~G~~~~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~~~~---~~l~~~~~~~~~~v~~~g~~~~~~~~~~~~ 281 (406)
T 2gek_A 206 -REGRTVLFLGRYDEPRKGMAVLLAALPKLVARFPDVEILIVGRGDE---DELREQAGDLAGHLRFLGQVDDATKASAMR 281 (406)
T ss_dssp -CSSCEEEEESCTTSGGGCHHHHHHHHHHHHTTSTTCEEEEESCSCH---HHHHHHTGGGGGGEEECCSCCHHHHHHHHH
T ss_pred -CCCeEEEEEeeeCccccCHHHHHHHHHHHHHHCCCeEEEEEcCCcH---HHHHHHHHhccCcEEEEecCCHHHHHHHHH
Confidence 145799999999 999999999999999976 6899999999873 666666665556788888888888889999
Q ss_pred HccEEEeCCC-CCCCcHHHHHHHHcCCceEEcCCcccccceecCcceEEecccccccccCCccCHHHHHHHHHHHHHhcC
Q 007247 476 GADFILIPSR-FEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYG 554 (611)
Q Consensus 476 ~aDv~l~pS~-~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~~la~~i~~ll~~~~ 554 (611)
.||++|+||. .|+||++++|||+||+|||+++.||+.|++.++.+|+++ +++|+++++++|.+++++
T Consensus 282 ~adv~v~ps~~~e~~~~~~~Ea~a~G~PvI~~~~~~~~e~i~~~~~g~~~----------~~~d~~~l~~~i~~l~~~-- 349 (406)
T 2gek_A 282 SADVYCAPHLGGESFGIVLVEAMAAGTAVVASDLDAFRRVLADGDAGRLV----------PVDDADGMAAALIGILED-- 349 (406)
T ss_dssp HSSEEEECCCSCCSSCHHHHHHHHHTCEEEECCCHHHHHHHTTTTSSEEC----------CTTCHHHHHHHHHHHHHC--
T ss_pred HCCEEEecCCCCCCCchHHHHHHHcCCCEEEecCCcHHHHhcCCCceEEe----------CCCCHHHHHHHHHHHHcC--
Confidence 9999999996 899999999999999999999999999999999999987 899999999999999997
Q ss_pred HHHHHHHHHHHH--HhhCCchHHHHHHHHHHHHHHHcCC
Q 007247 555 TQALAEMMKNGM--AQDLSWKGPAKKWEETLLNLEVAGS 591 (611)
Q Consensus 555 ~~~~~~~~~~~~--~~~fsw~~~a~~~~~~~~~l~~~~~ 591 (611)
++.+.++++++. .+.|||+.++++|+++|++++....
T Consensus 350 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 388 (406)
T 2gek_A 350 DQLRAGYVARASERVHRYDWSVVSAQIMRVYETVSGAGI 388 (406)
T ss_dssp HHHHHHHHHHHHHHGGGGBHHHHHHHHHHHHHHHCCTTC
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhcc
Confidence 777777776664 3499999999999999999986543
No 11
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=100.00 E-value=2.1e-37 Score=332.85 Aligned_cols=363 Identities=14% Similarity=0.110 Sum_probs=255.9
Q ss_pred CCCceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEeecCCcccccCCCceEEEEEeCCeeeEEEEEEeeecC
Q 007247 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRG 161 (611)
Q Consensus 82 ~~~MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 161 (611)
|++|||++++.. + ..||.+.++..|+++|+++||+|++++...+..... .. ..+. ....|
T Consensus 38 ~~~mkIl~v~~~--~--~~GG~~~~~~~l~~~L~~~G~~v~v~~~~~~~~~~~--~~-----------~~~~---~~~~~ 97 (416)
T 2x6q_A 38 LKGRSFVHVNST--S--FGGGVAEILHSLVPLLRSIGIEARWFVIEGPTEFFN--VT-----------KTFH---NALQG 97 (416)
T ss_dssp TTTCEEEEEESC--S--SSSTHHHHHHHHHHHHHHTTCEEEEEECCCCHHHHH--HH-----------HHHH---HHHTT
T ss_pred hhccEEEEEeCC--C--CCCCHHHHHHHHHHHHHhCCCeEEEEEccCCcchhh--hh-----------cccc---eeecc
Confidence 567999999976 3 369999999999999999999999998652210000 00 0000 00000
Q ss_pred ceEEEEeCccchhhhcCCCCccccCCCCCCCCcch-HHHHHHHHHHHHHhhHHhccCCCCCCCCCCCCCeEEEecCCccc
Q 007247 162 VDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDN-QLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTS 240 (611)
Q Consensus 162 v~~~~i~~~~~~~~~~~~~~~~iy~~~~~~~~~~~-~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Dvivh~hd~~~~ 240 (611)
.. .+. +... ...+..+.+.+.+.++. .+|| |||+|++...
T Consensus 98 ~~--------------------~~~------~~~~~~~~~~~~~~~~~~~l~~------------~~~D-vv~~~~~~~~ 138 (416)
T 2x6q_A 98 NE--------------------SLK------LTEEMKELYLNVNRENSKFIDL------------SSFD-YVLVHDPQPA 138 (416)
T ss_dssp CC--------------------SCC------CCHHHHHHHHHHHHHHHHSSCG------------GGSS-EEEEESSTTG
T ss_pred cc--------------------ccc------ccHHHHHHHHHHHHHHHHHHhh------------cCCC-EEEEeccchh
Confidence 00 000 1111 11111222223333322 2599 9999987664
Q ss_pred hHHHHHHHhccCCCCCCCceEEEEEecCccccccCcccccccCCCcccccccccccCCCCCCCCcchhHhHHHhhhccEE
Q 007247 241 LIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMV 320 (611)
Q Consensus 241 ~~~~~l~~~~~~~~~~~~~k~v~~iH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~v 320 (611)
.+..+++ ..+|+|+++|+..... ....+.+++..+..+|.+
T Consensus 139 ~~~~~~~---------~~~p~v~~~h~~~~~~------------------------------~~~~~~~~~~~~~~~~~~ 179 (416)
T 2x6q_A 139 ALIEFYE---------KKSPWLWRCHIDLSSP------------------------------NREFWEFLRRFVEKYDRY 179 (416)
T ss_dssp GGGGGSC---------CCSCEEEECCSCCSSC------------------------------CHHHHHHHHHHHTTSSEE
T ss_pred hHHHHHH---------hcCCEEEEEccccCCc------------------------------cHHHHHHHHHHHHhCCEE
Confidence 4332221 2489999999643210 001234556667788877
Q ss_pred E-ecCHHHHHHHHcCcCCCcccchhhhccceeEeeCCcccCCcCCCCccccccccCcchhhhccHHHHHHHHHHhCCCCC
Q 007247 321 L-TVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVD 399 (611)
Q Consensus 321 i-~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~Ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~ 399 (611)
+ ++|+...+.+ . ..++.+||||+|...+.+... .......++++++++.
T Consensus 180 i~~~s~~~~~~~--------~------~~~~~vi~ngvd~~~~~~~~~---------------~~~~~~~~r~~~~~~~- 229 (416)
T 2x6q_A 180 IFHLPEYVQPEL--------D------RNKAVIMPPSIDPLSEKNVEL---------------KQTEILRILERFDVDP- 229 (416)
T ss_dssp EESSGGGSCTTS--------C------TTTEEECCCCBCTTSTTTSCC---------------CHHHHHHHHHHTTCCT-
T ss_pred EEechHHHHhhC--------C------ccceEEeCCCCChhhhccccc---------------ChhhHHHHHHHhCCCC-
Confidence 6 6665443211 1 238899999999876654321 1223567888899874
Q ss_pred CCCcEEEEEcCcccccCHHHHHHHHHhccc--CCcEEEEEeCCCc---hhHHHHHHHHHHCC--CceEEeccc---ChHH
Q 007247 400 RNIPVIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKK---PMEKQLEQLEILYP--EKARGVAKF---NIPL 469 (611)
Q Consensus 400 ~~~~~il~iGrl~~~Kg~d~li~a~~~l~~--~~~~lvivG~g~~---~~~~~l~~l~~~~~--~~v~~~~~~---~~~~ 469 (611)
+.++|+|+||+.++||++.+++|++.+.+ ++++|+|+|+|+. ++.+.++++...++ +++.+.+.+ +.+.
T Consensus 230 -~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~~~~~V~~~G~~~~~~~~~ 308 (416)
T 2x6q_A 230 -EKPIITQVSRFDPWKGIFDVIEIYRKVKEKIPGVQLLLVGVMAHDDPEGWIYFEKTLRKIGEDYDVKVLTNLIGVHARE 308 (416)
T ss_dssp -TSCEEEEECCCCTTSCHHHHHHHHHHHHHHCTTCEEEEEECCCTTCHHHHHHHHHHHHHHTTCTTEEEEEGGGTCCHHH
T ss_pred -CCcEEEEEeccccccCHHHHHHHHHHHHHhCCCeEEEEEecCcccchhHHHHHHHHHHHhCCCCcEEEecccCCCCHHH
Confidence 45899999999999999999999999976 6899999999962 34556666665543 568877744 3567
Q ss_pred HHHHHHHccEEEeCCCCCCCcHHHHHHHHcCCceEEcCCcccccceecCcceEEecccccccccCCccCHHHHHHHHHHH
Q 007247 470 AHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRA 549 (611)
Q Consensus 470 ~~~i~~~aDv~l~pS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~~la~~i~~l 549 (611)
+..+++.||++++||.+|+||++++|||+||+|||+++.||+.|++.++.+|+++ + |+++++++|.++
T Consensus 309 ~~~~~~~ad~~v~ps~~E~~~~~~lEAma~G~PvI~~~~~g~~e~i~~~~~g~l~----------~--d~~~la~~i~~l 376 (416)
T 2x6q_A 309 VNAFQRASDVILQMSIREGFGLTVTEAMWKGKPVIGRAVGGIKFQIVDGETGFLV----------R--DANEAVEVVLYL 376 (416)
T ss_dssp HHHHHHHCSEEEECCSSCSSCHHHHHHHHTTCCEEEESCHHHHHHCCBTTTEEEE----------S--SHHHHHHHHHHH
T ss_pred HHHHHHhCCEEEECCCcCCCccHHHHHHHcCCCEEEccCCCChhheecCCCeEEE----------C--CHHHHHHHHHHH
Confidence 7889999999999999999999999999999999999999999999999999987 5 999999999999
Q ss_pred HHhcCHHHHHHHHHHHH---HhhCCchHHHHHHHHHHHHHH
Q 007247 550 LATYGTQALAEMMKNGM---AQDLSWKGPAKKWEETLLNLE 587 (611)
Q Consensus 550 l~~~~~~~~~~~~~~~~---~~~fsw~~~a~~~~~~~~~l~ 587 (611)
+++ ++.+.++++++. .++|||+.++++|+++|++++
T Consensus 377 l~~--~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~l~ 415 (416)
T 2x6q_A 377 LKH--PEVSKEMGAKAKERVRKNFIITKHMERYLDILNSLG 415 (416)
T ss_dssp HHC--HHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHTC-
T ss_pred HhC--HHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhh
Confidence 997 777777777663 468999999999999998765
No 12
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=100.00 E-value=2.7e-38 Score=333.91 Aligned_cols=363 Identities=16% Similarity=0.165 Sum_probs=257.2
Q ss_pred ceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEeecCCcccccCCCceEEEEEeCCeeeEEEEEEeeecCceE
Q 007247 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDR 164 (611)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~ 164 (611)
|||++++..++| .||.+.++..|+++|+++||+|+++++...... ..|+++
T Consensus 1 MkIl~i~~~~~~---~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~--------------------------~~~~~v 51 (374)
T 2iw1_A 1 MIVAFCLYKYFP---FGGLQRDFMRIASTVAARGHHVRVYTQSWEGDC--------------------------PKAFEL 51 (374)
T ss_dssp -CEEEECSEECT---TCHHHHHHHHHHHHHHHTTCCEEEEESEECSCC--------------------------CTTCEE
T ss_pred CeEEEEEeecCC---CcchhhHHHHHHHHHHhCCCeEEEEecCCCCCC--------------------------CCCcEE
Confidence 899999998777 599999999999999999999999997632110 125555
Q ss_pred EEEeCccchhhhcCCCCccccCCCCCCCCcchHHHHHHHHHHHHHhhHHhccCCCCCCCCCCCCCeEEEecCCccchHHH
Q 007247 165 VFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPC 244 (611)
Q Consensus 165 ~~i~~~~~~~~~~~~~~~~iy~~~~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Dvivh~hd~~~~~~~~ 244 (611)
+.+..+.+. +..++..+...+...++.. +|| +||+|++...+...
T Consensus 52 ~~~~~~~~~----------------------~~~~~~~~~~~l~~~i~~~------------~~D-vv~~~~~~~~~~~~ 96 (374)
T 2iw1_A 52 IQVPVKSHT----------------------NHGRNAEYYAWVQNHLKEH------------PAD-RVVGFNKMPGLDVY 96 (374)
T ss_dssp EECCCCCSS----------------------HHHHHHHHHHHHHHHHHHS------------CCS-EEEESSCCTTCSEE
T ss_pred EEEccCccc----------------------chhhHHHHHHHHHHHHhcc------------CCC-EEEEecCCCCceee
Confidence 544322111 1122223333444444432 699 89998754432111
Q ss_pred HHHHhccCCCCCCCceEEEEEecCccccccCcccccccCCCcccccccccccCCCCCCCCcchhHhHHHhh--hccEEEe
Q 007247 245 YLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGIL--ESDMVLT 322 (611)
Q Consensus 245 ~l~~~~~~~~~~~~~k~v~~iH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~--~ad~vi~ 322 (611)
+... ....+.+++.|+.... ....+ .....+.+..+. .+|.+++
T Consensus 97 ~~~~-------~~~~~~~~~~~~~~~~------------~~~~~---------------~~~~~~~~~~~~~~~~d~ii~ 142 (374)
T 2iw1_A 97 FAAD-------VCYAEKVAQEKGFLYR------------LTSRY---------------RHYAAFERATFEQGKSTKLMM 142 (374)
T ss_dssp ECCS-------CCHHHHHHHHCCHHHH------------TSHHH---------------HHHHHHHHHHHSTTCCCEEEE
T ss_pred eccc-------cccceeeeecccchhh------------hcHHH---------------HHHHHHHHHHhhccCCcEEEE
Confidence 1000 0122333333321110 00000 001122233333 6999999
Q ss_pred cCHHHHHHHHcCcCCCcccchhhhccceeEeeCCcccCCcCCCCccccccccCcchhhhccHHHHHHHHHHhCCCCCCCC
Q 007247 323 VSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNI 402 (611)
Q Consensus 323 vS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~Ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~ 402 (611)
+|+..++.+.+ .+|.+.+ ++.+||||+|.+.|.+... ...+..+++++|++. +.
T Consensus 143 ~s~~~~~~~~~--~~~~~~~------~~~vi~ngv~~~~~~~~~~----------------~~~~~~~~~~~~~~~--~~ 196 (374)
T 2iw1_A 143 LTDKQIADFQK--HYQTEPE------RFQILPPGIYPDRKYSEQI----------------PNSREIYRQKNGIKE--QQ 196 (374)
T ss_dssp SCHHHHHHHHH--HHCCCGG------GEEECCCCCCGGGSGGGSC----------------TTHHHHHHHHTTCCT--TC
T ss_pred cCHHHHHHHHH--HhCCChh------heEEecCCcCHHhcCcccc----------------hhHHHHHHHHhCCCC--CC
Confidence 99999999875 2455433 8999999999988765432 123567888999874 45
Q ss_pred cEEEEEcCcccccCHHHHHHHHHhccc---CCcEEEEEeCCCchhHHHHHHHHHHCC--CceEEecccChHHHHHHHHHc
Q 007247 403 PVIGFIGRLEEQKGSDILAAAIPHFIK---ENVQIIVLGTGKKPMEKQLEQLEILYP--EKARGVAKFNIPLAHMIIAGA 477 (611)
Q Consensus 403 ~~il~iGrl~~~Kg~d~li~a~~~l~~---~~~~lvivG~g~~~~~~~l~~l~~~~~--~~v~~~~~~~~~~~~~i~~~a 477 (611)
++|+|+||+.+.||++.+++|++.+.+ ++++|+|+|+|+. +.++++..+++ +++.+.+. . +.+..+++.|
T Consensus 197 ~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~l~i~G~g~~---~~~~~~~~~~~~~~~v~~~g~-~-~~~~~~~~~a 271 (374)
T 2iw1_A 197 NLLLQVGSDFGRKGVDRSIEALASLPESLRHNTLLFVVGQDKP---RKFEALAEKLGVRSNVHFFSG-R-NDVSELMAAA 271 (374)
T ss_dssp EEEEEECSCTTTTTHHHHHHHHHTSCHHHHHTEEEEEESSSCC---HHHHHHHHHHTCGGGEEEESC-C-SCHHHHHHHC
T ss_pred eEEEEeccchhhcCHHHHHHHHHHhHhccCCceEEEEEcCCCH---HHHHHHHHHcCCCCcEEECCC-c-ccHHHHHHhc
Confidence 899999999999999999999999975 4899999999873 44555554433 56877764 3 3466799999
Q ss_pred cEEEeCCCCCCCcHHHHHHHHcCCceEEcCCcccccceecCcceEEecccccccccCC-ccCHHHHHHHHHHHHHhcCHH
Q 007247 478 DFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVD-PVDVAAVSTTVRRALATYGTQ 556 (611)
Q Consensus 478 Dv~l~pS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~l~~~~~~~~~~v~-~~d~~~la~~i~~ll~~~~~~ 556 (611)
|++++||.+|+||++++|||+||+|||+++.||..|++.++.+|+++ + ++|+++++++|.+++++ ++
T Consensus 272 d~~v~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~e~i~~~~~g~~~----------~~~~~~~~l~~~i~~l~~~--~~ 339 (374)
T 2iw1_A 272 DLLLHPAYQEAAGIVLLEAITAGLPVLTTAVCGYAHYIADANCGTVI----------AEPFSQEQLNEVLRKALTQ--SP 339 (374)
T ss_dssp SEEEECCSCCSSCHHHHHHHHHTCCEEEETTSTTTHHHHHHTCEEEE----------CSSCCHHHHHHHHHHHHHC--HH
T ss_pred CEEEeccccCCcccHHHHHHHCCCCEEEecCCCchhhhccCCceEEe----------CCCCCHHHHHHHHHHHHcC--hH
Confidence 99999999999999999999999999999999999999999999987 6 88999999999999997 77
Q ss_pred HHHHHHHHHH--HhhCCchHHHHHHHHHHHHHHH
Q 007247 557 ALAEMMKNGM--AQDLSWKGPAKKWEETLLNLEV 588 (611)
Q Consensus 557 ~~~~~~~~~~--~~~fsw~~~a~~~~~~~~~l~~ 588 (611)
.+.++++++. .++++|+..++++.+++++.+.
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 373 (374)
T 2iw1_A 340 LRMAWAENARHYADTQDLYSLPEKAADIITGGLD 373 (374)
T ss_dssp HHHHHHHHHHHHHHHSCCSCHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhc
Confidence 7788887774 4688999999999999987653
No 13
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=100.00 E-value=1.7e-37 Score=324.85 Aligned_cols=316 Identities=16% Similarity=0.121 Sum_probs=245.3
Q ss_pred CCCceEEEEeee--------e---cCccccccHHHHhccchHHHHhCCCeEEEEeecCCcccccCCCceEEEEEeCCeee
Q 007247 82 GVGLNILFVGTE--------V---APWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIE 150 (611)
Q Consensus 82 ~~~MkIl~v~~~--------~---~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (611)
|++|||++++.. + +|. ..||.+.++..|+++|+++||+|+++++.......
T Consensus 1 M~~mkIl~v~~~~~~~~~~~~~p~~p~-~~gG~~~~~~~l~~~L~~~G~~v~v~~~~~~~~~~----------------- 62 (342)
T 2iuy_A 1 MRPLKVALVNIPLRVPGSDAWISVPPQ-GYGGIQWVVANLMDGLLELGHEVFLLGAPGSPAGR----------------- 62 (342)
T ss_dssp --CCEEEEECCCCBCTTSSSBCCSSCS-SSCHHHHHHHHHHHHHHHTTCEEEEESCTTSCCCS-----------------
T ss_pred CCccEEEEEeccccccCcccccccCcc-cCChHHHHHHHHHHHHHHcCCeEEEEecCCCCCCC-----------------
Confidence 557999999998 3 442 46999999999999999999999999977432111
Q ss_pred EEEEEEeeecCceEEEEeCccchhhhcCCCCccccCCCCCCCCcchHHHHHHHHHHHHHhhHHhccCCCCCCCCCCCCCe
Q 007247 151 KVRFFHCHKRGVDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDV 230 (611)
Q Consensus 151 ~~~~~~~~~~gv~~~~i~~~~~~~~~~~~~~~~iy~~~~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Dv 230 (611)
+++.++ ..+ .. ..+.++++.. +||
T Consensus 63 ---------~~~~~~--~~~-------------------------~~-------~~l~~~l~~~------------~~D- 86 (342)
T 2iuy_A 63 ---------PGLTVV--PAG-------------------------EP-------EEIERWLRTA------------DVD- 86 (342)
T ss_dssp ---------TTEEEC--SCC-------------------------SH-------HHHHHHHHHC------------CCS-
T ss_pred ---------Ccceec--cCC-------------------------cH-------HHHHHHHHhc------------CCC-
Confidence 122211 000 00 0122233332 699
Q ss_pred EEEecCCccchHHHHHHHhccCCCCCCCceEEEEEecCccccccCcccccccCCCcccccccccccCCCCCCCCcchhHh
Q 007247 231 VFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWM 310 (611)
Q Consensus 231 ivh~hd~~~~~~~~~l~~~~~~~~~~~~~k~v~~iH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (611)
|||+|.+...... .. ..++| |+++|+.....
T Consensus 87 vi~~~~~~~~~~~---~~-------~~~~p-v~~~h~~~~~~-------------------------------------- 117 (342)
T 2iuy_A 87 VVHDHSGGVIGPA---GL-------PPGTA-FISSHHFTTRP-------------------------------------- 117 (342)
T ss_dssp EEEECSSSSSCST---TC-------CTTCE-EEEEECSSSBC--------------------------------------
T ss_pred EEEECCchhhHHH---Hh-------hcCCC-EEEecCCCCCc--------------------------------------
Confidence 9999986654332 11 15889 99999643200
Q ss_pred HHHhhhccEEEecCHHHHHHHHcCcCCCcccchhhhccceeEeeCCcccCCcCCCCccccccccCcchhhhccHHHHHHH
Q 007247 311 KAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEAL 390 (611)
Q Consensus 311 k~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~Ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (611)
..+|.++++|+..++.+.+ ..++.+||||+|.+.|.+...
T Consensus 118 ----~~~d~ii~~S~~~~~~~~~-------------~~~~~vi~ngvd~~~~~~~~~----------------------- 157 (342)
T 2iuy_A 118 ----VNPVGCTYSSRAQRAHCGG-------------GDDAPVIPIPVDPARYRSAAD----------------------- 157 (342)
T ss_dssp ----SCCTTEEESCHHHHHHTTC-------------CTTSCBCCCCBCGGGSCCSTT-----------------------
T ss_pred ----ccceEEEEcCHHHHHHHhc-------------CCceEEEcCCCChhhcCcccc-----------------------
Confidence 0199999999999998763 128899999999988876531
Q ss_pred HHHhCCCCCCCCcEEEEEcCcccccCHHHHHHHHHhcccCCcEEEEEeCCCchhHHHHHHHHHHCCCceEEecccChHHH
Q 007247 391 QAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLA 470 (611)
Q Consensus 391 ~~~~gl~~~~~~~~il~iGrl~~~Kg~d~li~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~ 470 (611)
.. ++.++|+|+||+.+.||++.+++|++++ +++|+|+|+|+ ..+.++++..++++++.+.+..+.+.+
T Consensus 158 ----~~---~~~~~i~~vG~~~~~Kg~~~li~a~~~~---~~~l~i~G~g~--~~~~l~~~~~~~~~~v~~~g~~~~~~l 225 (342)
T 2iuy_A 158 ----QV---AKEDFLLFMGRVSPHKGALEAAAFAHAC---GRRLVLAGPAW--EPEYFDEITRRYGSTVEPIGEVGGERR 225 (342)
T ss_dssp ----CC---CCCSCEEEESCCCGGGTHHHHHHHHHHH---TCCEEEESCCC--CHHHHHHHHHHHTTTEEECCCCCHHHH
T ss_pred ----cC---CCCCEEEEEeccccccCHHHHHHHHHhc---CcEEEEEeCcc--cHHHHHHHHHHhCCCEEEeccCCHHHH
Confidence 01 2446899999999999999999999998 89999999997 566677777666678999888888888
Q ss_pred HHHHHHccEEEeCCC----------CCCCcHHHHHHHHcCCceEEcCCcccccceec--CcceEEecccccccccCCccC
Q 007247 471 HMIIAGADFILIPSR----------FEPCGLIQLHAMRYGTVPIVASTGGLVDTVEE--GFTGFQMGSFSVDCEAVDPVD 538 (611)
Q Consensus 471 ~~i~~~aDv~l~pS~----------~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~--g~~G~l~~~~~~~~~~v~~~d 538 (611)
..+++.||++++||. .|+||++++|||+||+|||+++.||+.|++.+ +.+|+++ ++ |
T Consensus 226 ~~~~~~adv~v~ps~~~~~~~~~~~~E~~~~~~~EAma~G~PvI~s~~~~~~e~~~~~~~~~g~~~----------~~-d 294 (342)
T 2iuy_A 226 LDLLASAHAVLAMSQAVTGPWGGIWCEPGATVVSEAAVSGTPVVGTGNGCLAEIVPSVGEVVGYGT----------DF-A 294 (342)
T ss_dssp HHHHHHCSEEEECCCCCCCTTCSCCCCCCCHHHHHHHHTTCCEEECCTTTHHHHGGGGEEECCSSS----------CC-C
T ss_pred HHHHHhCCEEEECCcccccccccccccCccHHHHHHHhcCCCEEEcCCCChHHHhcccCCCceEEc----------CC-C
Confidence 899999999999999 79999999999999999999999999999999 8999976 88 9
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHcC
Q 007247 539 VAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAG 590 (611)
Q Consensus 539 ~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~fsw~~~a~~~~~~~~~l~~~~ 590 (611)
+++++++|.++++ .+.+++.+.++|||+.++++|+++|++++...
T Consensus 295 ~~~l~~~i~~l~~-------~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 339 (342)
T 2iuy_A 295 PDEARRTLAGLPA-------SDEVRRAAVRLWGHVTIAERYVEQYRRLLAGA 339 (342)
T ss_dssp HHHHHHHHHTSCC-------HHHHHHHHHHHHBHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHhcCHHHHHHHHHHHHHHHHccC
Confidence 9999999999886 33344445689999999999999999998643
No 14
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=100.00 E-value=7.6e-37 Score=328.06 Aligned_cols=357 Identities=14% Similarity=0.139 Sum_probs=256.9
Q ss_pred ceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEeecCCcccccCCCceEEEEEeCCeeeEEEEEEeeecCceE
Q 007247 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDR 164 (611)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~ 164 (611)
|||+||++.+ |. .||.+.++..|+++|+++ |+|++++...... ..+. ....
T Consensus 1 MkI~~v~~~~-p~--~gG~~~~~~~l~~~L~~~-~~V~v~~~~~~g~-~~~~------------------------~~~~ 51 (413)
T 3oy2_A 1 MKLIIVGAHS-SV--PSGYGRVMRAIVPRISKA-HEVIVFGIHAFGR-SVHA------------------------NIEE 51 (413)
T ss_dssp CEEEEEEECT-TC--CSHHHHHHHHHHHHHTTT-SEEEEEEESCCSC-CSCS------------------------SSEE
T ss_pred CeEEEecCCC-CC--CCCHHHHHHHHHHHHHhc-CCeEEEeecCCCc-cccc------------------------cccc
Confidence 8999999864 53 699999999999999999 9999999763210 0000 0000
Q ss_pred EEEeCccchhhhcCCCCccccCCCCCCCCcchHHHHHHHHHHHHHhhHHhccCCCCCCCCCCCCCeEEEecCCccchHHH
Q 007247 165 VFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPC 244 (611)
Q Consensus 165 ~~i~~~~~~~~~~~~~~~~iy~~~~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Dvivh~hd~~~~~~~~ 244 (611)
+ +.. ....+ ..+.+.. + ....+...++.. +|| |||+|.|...+.+.
T Consensus 52 ~--~~~-~~~~~------~~~~~~~---~---------~~~~l~~~l~~~------------~~D-iv~~~~~~~~~~~~ 97 (413)
T 3oy2_A 52 F--DAQ-TAEHV------RGLNEQG---F---------YYSGLSEFIDVH------------KPD-IVMIYNDPIVIGNY 97 (413)
T ss_dssp E--EHH-HHHHH------TTCCSTT---C---------CHHHHHHHHHHH------------CCS-EEEEEECHHHHHHH
T ss_pred C--Ccc-ccccc------ccccccc---c---------hHHHHHHHHHhc------------CCC-EEEEcchHHHHHHH
Confidence 0 000 00000 0111000 0 011122222222 699 99999655544333
Q ss_pred HHHHhccCCCCCCCceEEEEEecCccccccCcccccccCCCcccccccccccCCCCCCCCcchhHhHHHhhhcc--EEEe
Q 007247 245 YLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESD--MVLT 322 (611)
Q Consensus 245 ~l~~~~~~~~~~~~~k~v~~iH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad--~vi~ 322 (611)
..+. .+. -...+++...|+..... ...++..+..+| .+++
T Consensus 98 ~~~~-~~~---~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~~~~~~ii~ 139 (413)
T 3oy2_A 98 LLAM-GKC---SHRTKIVLYVDLVSKNI----------------------------------RENLWWIFSHPKVVGVMA 139 (413)
T ss_dssp HHHG-GGC---CSCCEEEEEECCCSBSC----------------------------------CGGGGGGGGCTTEEEEEE
T ss_pred HHHh-ccC---CCCCceeeeccccchhh----------------------------------HHHHHHHHhccCCceEEE
Confidence 3332 210 01345666666432200 011355677878 9999
Q ss_pred cCHHHHHHHHcCcCCCcccchhhhccceeEeeCCcccCCcCCCCccccccccCcchhhhccHHHHHHHHHHhCCCCCCCC
Q 007247 323 VSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNI 402 (611)
Q Consensus 323 vS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~Ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~ 402 (611)
+|+..++.+.+ +|.+ .++.+||||+|...|. ..+++++++.+.+.
T Consensus 140 ~S~~~~~~~~~---~~~~-------~~~~vi~ngvd~~~~~-------------------------~~~~~~~~~~~~~~ 184 (413)
T 3oy2_A 140 MSKCWISDICN---YGCK-------VPINIVSHFVDTKTIY-------------------------DARKLVGLSEYNDD 184 (413)
T ss_dssp SSTHHHHHHHH---TTCC-------SCEEECCCCCCCCCCT-------------------------THHHHTTCGGGTTS
T ss_pred cCHHHHHHHHH---cCCC-------CceEEeCCCCCHHHHH-------------------------HHHHhcCCCcccCc
Confidence 99999999986 4542 2899999999988761 23567777653467
Q ss_pred cEEEEEcCcccccCHHHHHHHHHhccc--CCcEEEEEeCCCch----hHHHHHHHHHHCC--Cc-------eEEecccCh
Q 007247 403 PVIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKP----MEKQLEQLEILYP--EK-------ARGVAKFNI 467 (611)
Q Consensus 403 ~~il~iGrl~~~Kg~d~li~a~~~l~~--~~~~lvivG~g~~~----~~~~l~~l~~~~~--~~-------v~~~~~~~~ 467 (611)
++|+|+||+.++||++.+++|++++.+ ++++|+|+|+|+.. +++.++++..+++ ++ +.+.+..+.
T Consensus 185 ~~il~vGr~~~~Kg~~~li~a~~~l~~~~~~~~l~ivG~g~~~~~~~l~~~~~~~~~~~~l~~~v~~l~~vv~~~g~~~~ 264 (413)
T 3oy2_A 185 VLFLNMNRNTARKRLDIYVLAAARFISKYPDAKVRFLCNSHHESKFDLHSIALRELVASGVDNVFTHLNKIMINRTVLTD 264 (413)
T ss_dssp EEEECCSCSSGGGTHHHHHHHHHHHHHHCTTCCEEEEEECCTTCSCCHHHHHHHHHHHHTCSCHHHHHTTEEEECSCCCH
T ss_pred eEEEEcCCCchhcCcHHHHHHHHHHHHhCCCcEEEEEeCCcccchhhHHHHHHHHHHHcCcccccccccceeeccCcCCH
Confidence 899999999999999999999999865 78999999998743 4477777766654 33 555566788
Q ss_pred HHHHHHHHHccEEEeCCCCCCCcHHHHHHHHcCCceEEcCCcccccceecCcc---------------eE--Eecccccc
Q 007247 468 PLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFT---------------GF--QMGSFSVD 530 (611)
Q Consensus 468 ~~~~~i~~~aDv~l~pS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~---------------G~--l~~~~~~~ 530 (611)
+.+..+|+.||++++||.+|+||++++|||+||+|||+|+.||+.|++.++.+ |+ ++
T Consensus 265 ~~~~~~~~~adv~v~pS~~E~~~~~~lEAma~G~PvI~s~~~g~~e~v~~~~~~~i~~~~~~~~~~~~G~~gl~------ 338 (413)
T 3oy2_A 265 ERVDMMYNACDVIVNCSSGEGFGLCSAEGAVLGKPLIISAVGGADDYFSGDCVYKIKPSAWISVDDRDGIGGIE------ 338 (413)
T ss_dssp HHHHHHHHHCSEEEECCSCCSSCHHHHHHHTTTCCEEEECCHHHHHHSCTTTSEEECCCEEEECTTTCSSCCEE------
T ss_pred HHHHHHHHhCCEEEeCCCcCCCCcHHHHHHHcCCCEEEcCCCChHHHHccCcccccccccccccccccCcceee------
Confidence 88889999999999999999999999999999999999999999999999887 88 87
Q ss_pred cccCCccCHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HhhCCchHHHHHHHHHHHHHHHcC
Q 007247 531 CEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGM---AQDLSWKGPAKKWEETLLNLEVAG 590 (611)
Q Consensus 531 ~~~v~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~---~~~fsw~~~a~~~~~~~~~l~~~~ 590 (611)
+++|+++++++| +++++ ++.+.++++++. .++|||+.++++|+++|++++...
T Consensus 339 ----~~~d~~~la~~i-~l~~~--~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~~~~ 394 (413)
T 3oy2_A 339 ----GIIDVDDLVEAF-TFFKD--EKNRKEYGKRVQDFVKTKPTWDDISSDIIDFFNSLLRVE 394 (413)
T ss_dssp ----EECCHHHHHHHH-HHTTS--HHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHTC--
T ss_pred ----CCCCHHHHHHHH-HHhcC--HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhc
Confidence 889999999999 99997 777777777765 378999999999999999998654
No 15
>3nb0_A Glycogen [starch] synthase isoform 2; glycogen synthase, glucose-6-phosphate, yeast, allosteric AC transferase; HET: G6P; 2.41A {Saccharomyces cerevisiae} PDB: 3rt1_A* 3nch_A 3naz_A 3o3c_A* 3rsz_A*
Probab=100.00 E-value=3.3e-36 Score=330.62 Aligned_cols=442 Identities=17% Similarity=0.177 Sum_probs=290.3
Q ss_pred EEeeeecCccccccHHHHhccchHHHHh-CCCeEEEEeecCCcccc----cCCC-ceE--------EEE---EeCCeeeE
Q 007247 89 FVGTEVAPWSKTGGLGDVLGGLPPALAA-NGHRVMTIAPRYDQYKD----AWDT-DVV--------IEL---KVGDKIEK 151 (611)
Q Consensus 89 ~v~~~~~P~~~~GG~~~~~~~La~~L~~-~Gh~V~vit~~~~~~~~----~~~~-~~~--------~~~---~~~~~~~~ 151 (611)
-+++|+.. +.||+=+|+..-|+.+.+ .|-+...|.|...+... ..+. ... +.- ....+.-.
T Consensus 32 E~swEV~N--kVGGIyTVl~tka~~~~~~~gd~y~~iGP~~~~~~~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 109 (725)
T 3nb0_A 32 ETATEVAN--RVGGIYSVLKSKAPITVAQYKDHYHLIGPLNKATYQNEVDILDWKKPEAFSDEMRPVQHALQTMESRGVH 109 (725)
T ss_dssp EEETTTTS--CSSHHHHHHHHHHHHHHHHHGGGEEEEEECCTTTHHHHEEECCSSSGGGSCSTTHHHHHHHHHHHTTTCC
T ss_pred eeehhhhc--ccCCeEEEEecchhHHHHHhCCeEEEECCCCCCcCCcceeecCCCCchhhcchhHHHHHHHHHHHHCCCe
Confidence 35566544 799999999998888775 58899999985322111 0000 000 000 00111234
Q ss_pred EEEEEeeecCceEEEE-eCccchh-------hhcCCCCccccCCCCCCCCcchHHHHHHHHHHHHHhhHHhccCCCCCCC
Q 007247 152 VRFFHCHKRGVDRVFV-DHPWFLA-------KVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFS 223 (611)
Q Consensus 152 ~~~~~~~~~gv~~~~i-~~~~~~~-------~~~~~~~~~iy~~~~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~~~~~ 223 (611)
+++-+..+.|-+++.+ |...++. .+|-..+ +=++..+. +.+...+|.+++.++++.+..+..
T Consensus 110 v~~GrW~i~G~P~viL~d~~~~~~~~~~~~~~lw~~~~--i~s~~~yg-~~dd~~~F~y~~~avl~~l~~~~~------- 179 (725)
T 3nb0_A 110 FVYGRWLIEGAPKVILFDLDSVRGYSNEWKGDLWSLVG--IPSPENDF-ETNDAILLGYTVAWFLGEVAHLDS------- 179 (725)
T ss_dssp EEEEEESSTTCCEEEEECSGGGGGGHHHHHHHHHHHHC--CCCCSSCH-HHHHHHHHHHHHHHHHHHHHHHCC-------
T ss_pred EEEEEEecCCCceEEEEeChHHHHHHHHHHHHHHHHhC--cCCCCccc-chhHHHHHHHHHHHHHHHHHhcCC-------
Confidence 6666677888887654 5544443 3553322 22222222 334677999999999998876641
Q ss_pred CCCCCCeEEEecCCccchHHHHHHHhccCCCCCCCceEEEEEecCcc------ccccCcc-cccccCCCccccccccccc
Q 007247 224 GPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAY------QGRFAFE-DFGLLNLPAQFKSSFDFID 296 (611)
Q Consensus 224 ~~~~~Dvivh~hd~~~~~~~~~l~~~~~~~~~~~~~k~v~~iH~~~~------~~~~~~~-~~~~~~~~~~~~~~~~~~~ 296 (611)
+.|| |+|+|||++++++.+++..+ .++|+|||+|+... ||.++.. .+..++++.....
T Consensus 180 --~~pd-IiH~HDW~tg~~~~~Lk~~~------~~i~tVfTiH~telGR~lagqg~~~~y~~L~~~~~d~ea~~------ 244 (725)
T 3nb0_A 180 --QHAI-VAHFHEWLAGVALPLCRKRR------IDVVTIFTTHATLLGRYLCASGSFDFYNCLESVDVDHEAGR------ 244 (725)
T ss_dssp --SEEE-EEEEESGGGCTHHHHHHHTT------CSCEEEEEESSCHHHHHHTSSSCSCHHHHGGGCCHHHHHHH------
T ss_pred --CCCc-EEEeCchhhhHHHHHHHHhC------CCCCEEEEEecchhhhhhhhcCCCchhhhhhhcCCChhhhh------
Confidence 2589 99999999999999999764 69999999999852 3433211 1222222221100
Q ss_pred CCCCCCCCcchhHhHHHhhhccEEEecCHHHHHHHHcCcCCCcccchhhhccceeEeeCCcccCCcCCCCccccccccCc
Q 007247 297 GYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDA 376 (611)
Q Consensus 297 ~~~~~~~~~~~~~~k~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~Ngvd~~~~~p~~~~~~~~~~~~ 376 (611)
.-.....++++.++..||.|+|||+.+++++... ++.+.+ .+ |+||+|+..|+|...
T Consensus 245 ----~~i~~~~~~EKaga~~AD~ITTVS~~yA~Ei~~L--l~r~~d------~i--IpNGID~~~f~p~~~--------- 301 (725)
T 3nb0_A 245 ----FGIYHRYCIERAAAHSADVFTTVSQITAFEAEHL--LKRKPD------GI--LPNGLNVIKFQAFHE--------- 301 (725)
T ss_dssp ----TTCHHHHHHHHHHHHHSSEEEESSHHHHHHHHHH--TSSCCS------EE--CCCCBCCCCCSSTTH---------
T ss_pred ----hchhHHHHHHHHHHHhCCEEEECCHHHHHHHHHH--hcCCCC------EE--EcCCccccccCcchh---------
Confidence 0011356889999999999999999999999852 333322 33 999999999988521
Q ss_pred chhhhccHHHHHHHHHHh------CCCCC-CCCcEEEEEcCcc-cccCHHHHHHHHHhccc---------CCcEEEEEeC
Q 007247 377 STVMDAKPLLKEALQAEV------GLPVD-RNIPVIGFIGRLE-EQKGSDILAAAIPHFIK---------ENVQIIVLGT 439 (611)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~------gl~~~-~~~~~il~iGrl~-~~Kg~d~li~a~~~l~~---------~~~~lvivG~ 439 (611)
....+...+..+++.+ |++.+ ++.++|+.+||++ ++||+|.+++|+.+|.. .-+.|+|+..
T Consensus 302 --~~~~k~~aK~klq~~l~~~~~~~l~l~~dk~liifivgRle~~nKGiDl~ieAl~~L~~~l~~~~~~~~vvafii~p~ 379 (725)
T 3nb0_A 302 --FQNLHALKKEKINDFVRGHFHGCFDFDLDNTLYFFIAGRYEYKNKGADMFIEALARLNYRLKVSGSKKTVVAFIVMPA 379 (725)
T ss_dssp --HHHHHHHHHHHHHHHHHHHTTTCCCSCGGGEEEEEEESSCCTTTTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEECCC
T ss_pred --hHHHHHHHHHHHHHHHHhhcccCCCCCCCceeEEEEEEEeccccCCHHHHHHHHHHHHHHHhhccCCCcEEEEEEeCC
Confidence 1123334555665544 44444 3445566689999 79999999999999863 1377888877
Q ss_pred CCchh--------------HHHH---------------------------------------------------------
Q 007247 440 GKKPM--------------EKQL--------------------------------------------------------- 448 (611)
Q Consensus 440 g~~~~--------------~~~l--------------------------------------------------------- 448 (611)
+...+ .+.+
T Consensus 380 ~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~~~lkr~~~~~~~~~~~l 459 (725)
T 3nb0_A 380 KNNSFTVEALKGQAEVRALENTVHEVTTSIGKRIFDHAIRYPHNGLTTELPTDLGELLKSSDKVMLKRRILALRRPEGQL 459 (725)
T ss_dssp CEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCSSSCCCHHHHCCHHHHHHHHHHHHHHCCCTTCC
T ss_pred CCCCCchhhhcchhHHHHHHHHHHHHHHHHhHHHHHHHhcccccccCCCCCCCHHHhcChHHHHHHHHHHHhhccCCCCC
Confidence 63211 0000
Q ss_pred --------------------HHHHHHC----CCceEEecccChH-------HHHHHHHHccEEEeCCCCCCCcHHHHHHH
Q 007247 449 --------------------EQLEILY----PEKARGVAKFNIP-------LAHMIIAGADFILIPSRFEPCGLIQLHAM 497 (611)
Q Consensus 449 --------------------~~l~~~~----~~~v~~~~~~~~~-------~~~~i~~~aDv~l~pS~~E~~gl~~lEAm 497 (611)
+++.... ..++.++..|... .+..++++||++|+||.+|+||++++|||
T Consensus 460 pp~~TH~~~~~~~D~Il~~~r~l~L~N~~~drVKVIf~P~~L~~~d~lf~~d~~~~~~~advfV~PS~~EgfGl~~LEAm 539 (725)
T 3nb0_A 460 PPIVTHNMVDDANDLILNKIRQVQLFNSPSDRVKMIFHPEFLNANNPILGLDYDEFVRGCHLGVFPSYYEPWGYTPAECT 539 (725)
T ss_dssp CCSBSEEETTGGGCHHHHHHHHHTCCCCTTCSEEEEECCSCCCTTCSSSCCCHHHHHHHCSEEECCCSSBSSCHHHHHHH
T ss_pred CCeeeeecccCCccHHHHHHHhcCCCCCcCCceeEEEeccccCCCCccchhHHHHHHhhceEEEeccccCCCCHHHHHHH
Confidence 0000000 0124555444222 35679999999999999999999999999
Q ss_pred HcCCceEEcCCcccccceecC-------cceEEecccccccccCCccCHHHHHHHHHHHHHhc---CHHHHHHHHHHH--
Q 007247 498 RYGTVPIVASTGGLVDTVEEG-------FTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY---GTQALAEMMKNG-- 565 (611)
Q Consensus 498 a~G~PvI~s~~gg~~e~v~~g-------~~G~l~~~~~~~~~~v~~~d~~~la~~i~~ll~~~---~~~~~~~~~~~~-- 565 (611)
+||+|||+|+.||+.|+|.++ .+|+++... ++.|+++++++|.+++..+ ++..+.++++++
T Consensus 540 A~G~PvI~s~~gG~~d~V~dg~~~~~~~~tG~lV~~r-------d~~d~ee~aeaLa~aL~~f~~~d~~~r~~mr~~ar~ 612 (725)
T 3nb0_A 540 VMGVPSITTNVSGFGSYMEDLIETNQAKDYGIYIVDR-------RFKAPDESVEQLVDYMEEFVKKTRRQRINQRNATEA 612 (725)
T ss_dssp HTTCCEEEETTBHHHHHHHTTSCHHHHHHTTEEEECC-------SSSCHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HcCCCEEEeCCCChhhhhhccccccCCCCceEEEeCC-------CCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 999999999999999999875 479876111 3457777777777776532 355666777666
Q ss_pred HHhhCCchHHHHHHHHHHHHHHHc
Q 007247 566 MAQDLSWKGPAKKWEETLLNLEVA 589 (611)
Q Consensus 566 ~~~~fsw~~~a~~~~~~~~~l~~~ 589 (611)
++++|||+.++++|+++|+.++..
T Consensus 613 ~A~~FSWe~iA~~Yl~~Ye~aL~~ 636 (725)
T 3nb0_A 613 LSDLLDWKRMGLEYVKARQLALRR 636 (725)
T ss_dssp GGGGGBHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhh
Confidence 458999999999999999998864
No 16
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A*
Probab=100.00 E-value=6.1e-33 Score=298.56 Aligned_cols=355 Identities=12% Similarity=0.099 Sum_probs=228.4
Q ss_pred cCCCceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEeecCCcccccCCCceEEEEEeCCeeeEEEEEEeeec
Q 007247 81 CGVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKR 160 (611)
Q Consensus 81 ~~~~MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (611)
...+|||++++..|.|....||.. .+.+|+++|+++||+|+|+++......... ....
T Consensus 43 ~~~~mrI~~v~~~~~p~~~~GG~~-~v~~la~~L~~~GheV~Vvt~~~~~~~~~~---------------------~~~~ 100 (413)
T 2x0d_A 43 SIKGKRLNLLVPSINQEHMFGGIS-TALKLFEQFDNKKFKKRIILTDATPNPKDL---------------------QSFK 100 (413)
T ss_dssp CCCSCEEEEEESCCCGGGCSHHHH-HHHHHHTTSCTTTCEEEEEESSCCCCHHHH---------------------GGGT
T ss_pred CCCCceEEEEeCCCCccccccHHH-HHHHHHHHHHHcCCceEEEEecCCCChHHH---------------------Hhhh
Confidence 356899999999988842347775 588999999999999999998632100000 0000
Q ss_pred CceEEEEeCcc-chhhhcCCCCccccCCCCCCCCcchHHHHHHHHHHHHHhhHHhccCCCCCCCCCCCCCeEEEecCCcc
Q 007247 161 GVDRVFVDHPW-FLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHT 239 (611)
Q Consensus 161 gv~~~~i~~~~-~~~~~~~~~~~~iy~~~~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Dvivh~hd~~~ 239 (611)
+.....+.... +..+ +.. +.. . ....+.. .++| +||+|.|.+
T Consensus 101 ~~~~~~~~~~~~~~~~--------i~~------~~~----------~---~~~~~~~---------~~~D-vv~a~~~~~ 143 (413)
T 2x0d_A 101 SFKYVMPEEDKDFALQ--------IVP------FND----------R---YNRTIPV---------AKHD-IFIATAWWT 143 (413)
T ss_dssp TSEECCTTCCCCCSEE--------EEE------CSC----------C---TTCCEEE---------CTTE-EEEECSHHH
T ss_pred ccceeeccCCccccce--------eee------ccc----------c---ccccccC---------CCCC-EEEEehHHH
Confidence 00000000000 0000 000 000 0 0000000 1589 889998877
Q ss_pred chHHHHHH----HhccCCCCCCCceEEEEEecCccccccCcccccccCCCcccccccccccCCCCCCCCcchhHhHHHhh
Q 007247 240 SLIPCYLK----TMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGIL 315 (611)
Q Consensus 240 ~~~~~~l~----~~~~~~~~~~~~k~v~~iH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~ 315 (611)
+.....+. ..+. ....|.++.+|+.... +. + ......+.+..+.
T Consensus 144 ~~~~~~~~~~~~~~~~----~~~~~~~~~v~~~~~~--~~-------------------------~-~~~~~~~~~~~~~ 191 (413)
T 2x0d_A 144 AYAAQRIVSWQSDTYG----IPPNKILYIIQDFEPG--FY-------------------------Q-WSSQYVLAESTYK 191 (413)
T ss_dssp HHHHHHHHHHHHHHHT----CCCCCEEEEECSCGGG--GS-------------------------C-SSHHHHHHHHTTS
T ss_pred HHHHHHhhhhhhhhcc----cccCcEEEEEeechhh--cC-------------------------c-cChHHHHHHHHhc
Confidence 65554431 1110 0256778878854220 00 0 0001122334455
Q ss_pred hcc--EEEecCHHHHHHHHcCcCCCcccchhhhccceeEeeCCcccCCcCCCCccccccccCcchhhhccHHHHHHHHHH
Q 007247 316 ESD--MVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAE 393 (611)
Q Consensus 316 ~ad--~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~Ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (611)
.++ .++++|+..++.+.+ +|.+.. ++.+|+||+|.+.|.+..
T Consensus 192 ~~~~~~vi~~S~~~~~~l~~---~g~~~~------~~~~i~~g~d~~~~~~~~--------------------------- 235 (413)
T 2x0d_A 192 YRGPQIAVFNSELLKQYFNN---KGYNFT------DEYFFQPKINTTLKNYIN--------------------------- 235 (413)
T ss_dssp CCSCEEEEEESHHHHHHHHH---HTCCCS------EEEEECCCCCHHHHTTTT---------------------------
T ss_pred cCCceEEEEcCHHHHHHHHH---cCCCCC------ceEEeCCCcCchhhcccc---------------------------
Confidence 554 689999999999986 343322 678999999876543321
Q ss_pred hCCCCCCCCcEEEEEcCc-ccccCHHHHHHHHHhccc--C---CcEEEEEeCCCchhHHHHHHHHHHCCCceEEecccCh
Q 007247 394 VGLPVDRNIPVIGFIGRL-EEQKGSDILAAAIPHFIK--E---NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNI 467 (611)
Q Consensus 394 ~gl~~~~~~~~il~iGrl-~~~Kg~d~li~a~~~l~~--~---~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~ 467 (611)
.+ .++.+.++++||+ .+.||++.+++|++++.+ + +++|+|+|+|... .++ ...+++.+.+..+.
T Consensus 236 ~~---~~~~~~il~~gr~~~~~Kg~~~li~A~~~l~~~~~~~~~~~l~ivG~~~~~-----~~l--~~~~~v~f~G~~~~ 305 (413)
T 2x0d_A 236 DK---RQKEKIILVYGRPSVKRNAFTLIVEALKIFVQKYDRSNEWKIISVGEKHKD-----IAL--GKGIHLNSLGKLTL 305 (413)
T ss_dssp SC---CCCCSEEEEEECTTCGGGCHHHHHHHHHHHHHHCTTGGGCEEEEEESCCCC-----EEE--ETTEEEEEEESCCH
T ss_pred cc---cCCCCEEEEEecCchhccCHHHHHHHHHHHHHhCCCCCceEEEEEcCCchh-----hhc--CCcCcEEEcCCCCH
Confidence 00 1234688999996 689999999999999865 4 3899999998742 011 12346888888888
Q ss_pred HHHHHHHHHccEEEeCCCCCCCcHHHHHHHHcCCceEEcCCcccccceecCcceEEecccccccccCCccCHHHHHHHHH
Q 007247 468 PLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVR 547 (611)
Q Consensus 468 ~~~~~i~~~aDv~l~pS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~~la~~i~ 547 (611)
+.+..+|+.||++++||.+|+||++++||||||+|||++ .+|..|++.++.+|+++ +++|+++++++|.
T Consensus 306 ~~l~~~~~~adv~v~pS~~E~~g~~~lEAmA~G~PVV~~-~~g~~e~v~~~~~G~lv----------~~~d~~~la~ai~ 374 (413)
T 2x0d_A 306 EDYADLLKRSSIGISLMISPHPSYPPLEMAHFGLRVITN-KYENKDLSNWHSNIVSL----------EQLNPENIAETLV 374 (413)
T ss_dssp HHHHHHHHHCCEEECCCSSSSCCSHHHHHHHTTCEEEEE-CBTTBCGGGTBTTEEEE----------SSCSHHHHHHHHH
T ss_pred HHHHHHHHhCCEEEEecCCCCCCcHHHHHHhCCCcEEEe-CCCcchhhhcCCCEEEe----------CCCCHHHHHHHHH
Confidence 889999999999999999999999999999999999995 56778999999999987 9999999999999
Q ss_pred HHHHhcCHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHH
Q 007247 548 RALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLE 587 (611)
Q Consensus 548 ~ll~~~~~~~~~~~~~~~~~~~fsw~~~a~~~~~~~~~l~ 587 (611)
++++++ +.+.+ ......+.|||+...++ .+.|+++.
T Consensus 375 ~ll~~~--~~~~~-~~~~~~~~~~W~~~~~~-~~~~~~l~ 410 (413)
T 2x0d_A 375 ELCMSF--NNRDV-DKKESSNMMFYINEFNE-FSFIKEIE 410 (413)
T ss_dssp HHHHHT--C--------CCBSCGGGCCCC----TTHHHHH
T ss_pred HHHcCH--HHHHH-hHHHHHHhCCHHHHHHH-HHHHHHHH
Confidence 999984 33333 11123468999999887 66666664
No 17
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=99.97 E-value=4.9e-29 Score=262.49 Aligned_cols=338 Identities=15% Similarity=0.015 Sum_probs=225.7
Q ss_pred CceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEeecCCcccccCCCceEEEEEeCCeeeEEEEEEeeecCce
Q 007247 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVD 163 (611)
Q Consensus 84 ~MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~ 163 (611)
+|||++++. + .||....+..|+++|+++||+|.++++......+.. ...|++
T Consensus 6 ~mkIl~~~~---~---~gG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~----------------------~~~g~~ 57 (364)
T 1f0k_A 6 GKRLMVMAG---G---TGGHVFPGLAVAHHLMAQGWQVRWLGTADRMEADLV----------------------PKHGIE 57 (364)
T ss_dssp -CEEEEECC---S---SHHHHHHHHHHHHHHHTTTCEEEEEECTTSTHHHHG----------------------GGGTCE
T ss_pred CcEEEEEeC---C---CccchhHHHHHHHHHHHcCCEEEEEecCCcchhhhc----------------------cccCCc
Confidence 389999973 2 478888899999999999999999997632111100 012444
Q ss_pred EEEEeCccchhhhcCCCCccccCCCCCCCCcchHHHHHHHHHHHHHhhHHhccCCCCCCCCCCCCCeEEEecCCccchHH
Q 007247 164 RVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIP 243 (611)
Q Consensus 164 ~~~i~~~~~~~~~~~~~~~~iy~~~~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Dvivh~hd~~~~~~~ 243 (611)
++.+..+.+... .... ......++......+.++++.. +|| +||+|.....+..
T Consensus 58 ~~~~~~~~~~~~-------~~~~------~~~~~~~~~~~~~~l~~~l~~~------------~pD-vv~~~~~~~~~~~ 111 (364)
T 1f0k_A 58 IDFIRISGLRGK-------GIKA------LIAAPLRIFNAWRQARAIMKAY------------KPD-VVLGMGGYVSGPG 111 (364)
T ss_dssp EEECCCCCCTTC-------CHHH------HHTCHHHHHHHHHHHHHHHHHH------------CCS-EEEECSSTTHHHH
T ss_pred eEEecCCccCcC-------ccHH------HHHHHHHHHHHHHHHHHHHHhc------------CCC-EEEEeCCcCchHH
Confidence 444332211100 0000 0001111111223333344433 699 8899865433333
Q ss_pred HHHHHhccCCCCCCCceEEEEEecCccccccCcccccccCCCcccccccccccCCCCCCCCcchhHhHHHhhhccEEEec
Q 007247 244 CYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTV 323 (611)
Q Consensus 244 ~~l~~~~~~~~~~~~~k~v~~iH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~vi~v 323 (611)
..+... .++|+|++.|+... + ...+...+.+|.+++.
T Consensus 112 ~~~~~~-------~~~p~v~~~~~~~~-~-----------------------------------~~~~~~~~~~d~v~~~ 148 (364)
T 1f0k_A 112 GLAAWS-------LGIPVVLHEQNGIA-G-----------------------------------LTNKWLAKIATKVMQA 148 (364)
T ss_dssp HHHHHH-------TTCCEEEEECSSSC-C-----------------------------------HHHHHHTTTCSEEEES
T ss_pred HHHHHH-------cCCCEEEEecCCCC-c-----------------------------------HHHHHHHHhCCEEEec
Confidence 333333 48999999995321 0 0112345679999998
Q ss_pred CHHHHHHHHcCcCCCcccchhhhccceeEeeCCcccCCcCCCCccccccccCcchhhhccHHHHHHHHHHhCCCCCCCCc
Q 007247 324 SPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIP 403 (611)
Q Consensus 324 S~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~Ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~ 403 (611)
++.. + + ++.+|+||+|...+.+.. .+++++++. +.+
T Consensus 149 ~~~~---------~--~--------~~~~i~n~v~~~~~~~~~-----------------------~~~~~~~~~--~~~ 184 (364)
T 1f0k_A 149 FPGA---------F--P--------NAEVVGNPVRTDVLALPL-----------------------PQQRLAGRE--GPV 184 (364)
T ss_dssp STTS---------S--S--------SCEECCCCCCHHHHTSCC-----------------------HHHHHTTCC--SSE
T ss_pred Chhh---------c--C--------CceEeCCccchhhcccch-----------------------hhhhcccCC--CCc
Confidence 7643 1 1 577899999977665421 134556543 334
Q ss_pred -EEEEEcCcccccCHHHHHHHHHhcccCCcE-EEEEeCCCchhHHHHHHHHHHCC-CceEEecccChHHHHHHHHHccEE
Q 007247 404 -VIGFIGRLEEQKGSDILAAAIPHFIKENVQ-IIVLGTGKKPMEKQLEQLEILYP-EKARGVAKFNIPLAHMIIAGADFI 480 (611)
Q Consensus 404 -~il~iGrl~~~Kg~d~li~a~~~l~~~~~~-lvivG~g~~~~~~~l~~l~~~~~-~~v~~~~~~~~~~~~~i~~~aDv~ 480 (611)
++++.|++.++||.+.+++|++++.+ +++ ++++|+|+ . +.++++..+++ +++.+.+.. +.+..+|+.||++
T Consensus 185 ~il~~~g~~~~~k~~~~li~a~~~l~~-~~~~l~i~G~~~--~-~~l~~~~~~~~~~~v~~~g~~--~~~~~~~~~ad~~ 258 (364)
T 1f0k_A 185 RVLVVGGSQGARILNQTMPQVAAKLGD-SVTIWHQSGKGS--Q-QSVEQAYAEAGQPQHKVTEFI--DDMAAAYAWADVV 258 (364)
T ss_dssp EEEEECTTTCCHHHHHHHHHHHHHHGG-GEEEEEECCTTC--H-HHHHHHHHHTTCTTSEEESCC--SCHHHHHHHCSEE
T ss_pred EEEEEcCchHhHHHHHHHHHHHHHhcC-CcEEEEEcCCch--H-HHHHHHHhhcCCCceEEecch--hhHHHHHHhCCEE
Confidence 45566799999999999999999966 788 57788887 2 55666666554 467777655 3456799999999
Q ss_pred EeCCCCCCCcHHHHHHHHcCCceEEcCCcccc--------cceecCcceEEecccccccccCCccC--HHHHHHHHHHHH
Q 007247 481 LIPSRFEPCGLIQLHAMRYGTVPIVASTGGLV--------DTVEEGFTGFQMGSFSVDCEAVDPVD--VAAVSTTVRRAL 550 (611)
Q Consensus 481 l~pS~~E~~gl~~lEAma~G~PvI~s~~gg~~--------e~v~~g~~G~l~~~~~~~~~~v~~~d--~~~la~~i~~ll 550 (611)
++||. |++++|||+||+|||+++.+|.. ++++++ .|+++ +++| +++++++|.++
T Consensus 259 v~~sg----~~~~~EAma~G~Pvi~~~~~g~~~~q~~~~~~~~~~g-~g~~~----------~~~d~~~~~la~~i~~l- 322 (364)
T 1f0k_A 259 VCRSG----ALTVSEIAAAGLPALFVPFQHKDRQQYWNALPLEKAG-AAKII----------EQPQLSVDAVANTLAGW- 322 (364)
T ss_dssp EECCC----HHHHHHHHHHTCCEEECCCCCTTCHHHHHHHHHHHTT-SEEEC----------CGGGCCHHHHHHHHHTC-
T ss_pred EECCc----hHHHHHHHHhCCCEEEeeCCCCchhHHHHHHHHHhCC-cEEEe----------ccccCCHHHHHHHHHhc-
Confidence 99994 99999999999999999999874 355444 59986 8888 99999999998
Q ss_pred HhcCHHHHHHHHHHHH--HhhCCchHHHHHHHHHHHHHH
Q 007247 551 ATYGTQALAEMMKNGM--AQDLSWKGPAKKWEETLLNLE 587 (611)
Q Consensus 551 ~~~~~~~~~~~~~~~~--~~~fsw~~~a~~~~~~~~~l~ 587 (611)
+ ++.+.++++++. .+.|+|+.++++|+++|++..
T Consensus 323 -~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~ 358 (364)
T 1f0k_A 323 -S--RETLLTMAERARAASIPDATERVANEVSRVARALE 358 (364)
T ss_dssp -C--HHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHTTC-
T ss_pred -C--HHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHH
Confidence 5 777778877764 368999999999999998654
No 18
>2hy7_A Glucuronosyltransferase GUMK; glycosyltransferases, xanthan, membrane-associated proteins; 1.90A {Xanthomonas campestris} PDB: 2q6v_A* 3cv3_A* 3cuy_A*
Probab=99.97 E-value=4.5e-30 Score=275.81 Aligned_cols=202 Identities=15% Similarity=0.117 Sum_probs=163.1
Q ss_pred hHhHHHhhhccEEEecCHHHHHHHHcCcCCCcccchhhhccceeEeeCCcccCCcCCCCccccccccCcchhhhccHHHH
Q 007247 308 NWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLK 387 (611)
Q Consensus 308 ~~~k~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~Ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 387 (611)
.+++..++.+|.++++|+..++.+.+ ++ ++.+||||+|.+.|.+....
T Consensus 170 ~~~~~~~~~ad~vi~~S~~~~~~~~~---~~----------~i~vipngvd~~~f~~~~~~------------------- 217 (406)
T 2hy7_A 170 REFDRVAPTLDVIALVSPAMAAEVVS---RD----------NVFHVGHGVDHNLDQLGDPS------------------- 217 (406)
T ss_dssp HHHHHHGGGCSEEEESCGGGGGGCSC---ST----------TEEECCCCBCTTHHHHHCSC-------------------
T ss_pred HHHHHHHHhCCEEEEcCHHHHHHHHh---cC----------CEEEEcCCcChHhcCccccc-------------------
Confidence 45677889999999999999887664 22 68999999998776432110
Q ss_pred HHHHHHhCCCCCCCCcEEEEEcCcccccCHHHHHHHHHhcccCCcEEEEEeCCCchhHHHHHHHHHHCCCceEEecccCh
Q 007247 388 EALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNI 467 (611)
Q Consensus 388 ~~~~~~~gl~~~~~~~~il~iGrl~~~Kg~d~li~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~ 467 (611)
+ .++.++|+|+||+.+.||+ ++++.+. .++++|+|+|+|+ .+++ ...+++.+.+..+.
T Consensus 218 ---------~-~~~~~~i~~vGrl~~~Kg~---~~~l~~~-~~~~~l~ivG~g~------~~~~--~l~~~V~f~G~~~~ 275 (406)
T 2hy7_A 218 ---------P-YAEGIHAVAVGSMLFDPEF---FVVASKA-FPQVTFHVIGSGM------GRHP--GYGDNVIVYGEMKH 275 (406)
T ss_dssp ---------S-CCSSEEEEEECCTTBCHHH---HHHHHHH-CTTEEEEEESCSS------CCCT--TCCTTEEEECCCCH
T ss_pred ---------c-cCCCcEEEEEeccccccCH---HHHHHHh-CCCeEEEEEeCch------HHhc--CCCCCEEEcCCCCH
Confidence 1 1233789999999999998 4444332 3789999999986 1111 23467999988888
Q ss_pred HHHHHHHHHccEEEeCCCCCCCcHHHHHHH-------HcCCceEEcCCcccccceecCcceEE-ecccccccccCCccCH
Q 007247 468 PLAHMIIAGADFILIPSRFEPCGLIQLHAM-------RYGTVPIVASTGGLVDTVEEGFTGFQ-MGSFSVDCEAVDPVDV 539 (611)
Q Consensus 468 ~~~~~i~~~aDv~l~pS~~E~~gl~~lEAm-------a~G~PvI~s~~gg~~e~v~~g~~G~l-~~~~~~~~~~v~~~d~ 539 (611)
+.+..+|+.||++++||..|+||++++||| +||+|||+|+. +.++.+|++ + +++|+
T Consensus 276 ~~l~~~~~~adv~v~ps~~E~~~~~~lEAm~Kl~eYla~G~PVIas~~------v~~~~~G~l~v----------~~~d~ 339 (406)
T 2hy7_A 276 AQTIGYIKHARFGIAPYASEQVPVYLADSSMKLLQYDFFGLPAVCPNA------VVGPYKSRFGY----------TPGNA 339 (406)
T ss_dssp HHHHHHHHTCSEEECCBSCSCCCTTHHHHCHHHHHHHHHTCCEEEEGG------GTCSCSSEEEE----------CTTCH
T ss_pred HHHHHHHHhcCEEEECCCcccCchHHHHHHHHHHHHhhCCCcEEEehh------cccCcceEEEe----------CCCCH
Confidence 888899999999999999999999999999 99999999987 667889998 7 99999
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCchHHHHHHHHH--HHHHHH
Q 007247 540 AAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEET--LLNLEV 588 (611)
Q Consensus 540 ~~la~~i~~ll~~~~~~~~~~~~~~~~~~~fsw~~~a~~~~~~--~~~l~~ 588 (611)
++++++|.++++++. . ...++|||+.++++++++ |+++..
T Consensus 340 ~~la~ai~~ll~~~~--------~-~~~~~~sw~~~a~~~~~~~~y~~~~~ 381 (406)
T 2hy7_A 340 DSVIAAITQALEAPR--------V-RYRQCLNWSDTTDRVLDPRAYPETRL 381 (406)
T ss_dssp HHHHHHHHHHHHCCC--------C-CCSCCCBHHHHHHHHHCGGGSGGGBS
T ss_pred HHHHHHHHHHHhCcc--------h-hhhhcCCHHHHHHHHHHhhcccccCc
Confidence 999999999999844 1 235789999999999999 887664
No 19
>1l5w_A Maltodextrin phosphorylase; enzymatic catalysis, substrate complex, trans; HET: GLC PLP; 1.80A {Escherichia coli} SCOP: c.87.1.4 PDB: 1l5v_A* 1l6i_A* 2asv_A* 2av6_A* 2aw3_A* 2azd_A* 1qm5_A* 1e4o_A* 2ecp_A* 1ahp_A*
Probab=99.96 E-value=4.4e-28 Score=270.35 Aligned_cols=371 Identities=15% Similarity=0.174 Sum_probs=267.8
Q ss_pred hHHHH---HHHHHHHHHh-hHHhccCCCCCCCCCCCCCeEEEecCCccchHHH-HHHHhccCCCC-----C--CCceEEE
Q 007247 196 NQLRF---SLLCQAALEA-PRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPC-YLKTMYKPKGM-----Y--KSAKVVF 263 (611)
Q Consensus 196 ~~~r~---~~~~~~~~~~-~~~l~~~~~~~~~~~~~~Dvivh~hd~~~~~~~~-~l~~~~~~~~~-----~--~~~k~v~ 263 (611)
..+|+ .+|+.+.++. ++.+..... -+..--+|| +||+||||+++++. +++.....+|+ + .+.+++|
T Consensus 265 k~lRL~Qe~ff~~a~lq~ilr~~~~~~~-~~~~l~~p~-viHlNDtHpal~i~ElmR~l~d~~~~~~d~A~~i~~~~~vy 342 (796)
T 1l5w_A 265 KKLRLMQQYFQCACSVADILRRHHLAGR-KLHELADYE-VIQLNDTHPTIAIPELLRVLIDEHQMSWDDAWAITSKTFAY 342 (796)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTC-CGGGHHHHE-EEEEESSTTTTHHHHHHHHHHHHSCCCHHHHHHHHTTTEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChhhcCCcc-EEEecCCccHhHHHHHHHHHhhhcCCCHHHHHHHhhccEEE
Confidence 34555 5778888875 554321000 000000478 99999999999888 66544321111 1 3778999
Q ss_pred EEecCccccc--cCcccccccCCCcccc----------cc-----------cccccCCCCCCCCcchhHhHHHhhhccEE
Q 007247 264 CIHNIAYQGR--FAFEDFGLLNLPAQFK----------SS-----------FDFIDGYNKPVRGRKINWMKAGILESDMV 320 (611)
Q Consensus 264 ~iH~~~~~~~--~~~~~~~~~~~~~~~~----------~~-----------~~~~~~~~~~~~~~~~~~~k~~~~~ad~v 320 (611)
|+|++.++|. |+.+.+..+- |+.+. .. +. ..+. .....+++++.++..|+.|
T Consensus 343 T~HTl~~egle~wp~~l~~~~l-pr~~~ii~~I~~~f~~~~~~~~~~~~~~~~-~~~i---~~~~~vnMa~lai~~S~~V 417 (796)
T 1l5w_A 343 TNHTLMPEALERWDVKLVKGLL-PRHMQIINEINTRFKTLVEKTWPGDEKVWA-KLAV---VHDKQVHMANLCVVGGFAV 417 (796)
T ss_dssp ECCCCSGGGSCEEEHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHSTTCHHHHH-HHCS---EETTEEEHHHHHHHHSSEE
T ss_pred EecCCcHhhhhcCCHHHHHHHh-HHHHHHHhccCHHHHHHHHHhcCCcHHHHh-hhhc---ccCCcccHHHHHHHhcCcc
Confidence 9999999985 6655443211 11110 00 00 0000 0113578899999999999
Q ss_pred EecCHHHHHHHHcCcCCCcccchhhhccceeEeeCCcccCCc----CCCCccccccccC----------------cch--
Q 007247 321 LTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEW----NPLTDKYIGVKYD----------------AST-- 378 (611)
Q Consensus 321 i~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~Ngvd~~~~----~p~~~~~~~~~~~----------------~~~-- 378 (611)
.+||+-+.+.+... .++ +... +.+.++..|.||||...| +|..++.+...|+ ..+
T Consensus 418 NgVS~lH~e~ik~~-~f~-~~~~-~~p~k~~~iTNGI~~rrWl~~~NP~l~~li~~~~g~~w~~d~~~l~~l~~~~~d~~ 494 (796)
T 1l5w_A 418 NGVAALHSDLVVKD-LFP-EYHQ-LWPNKFHNVTNGITPRRWIKQCNPALAALLDKSLQKEWANDLDQLINLEKFADDAK 494 (796)
T ss_dssp EESSHHHHHHHHHT-TSH-HHHH-HCGGGEEECCCCBCHHHHTTTTCHHHHHHHHHHCSSCCTTCGGGGGGGGGGGGCHH
T ss_pred ccccHHHHHHHHhH-Hhh-HHHH-hCccccCCCcCCCcHHHhhcccCHhHHHHHHHhcCcccccCHHHHHHHHhcCCCHH
Confidence 99999999999752 222 1111 234589999999999999 7877777777776 443
Q ss_pred ----hhhccHHHHHH----HHHHhCCCCCCCCcEEEEEcCcccccCHHH-HHHHHHhccc---------CCcEEEEEeCC
Q 007247 379 ----VMDAKPLLKEA----LQAEVGLPVDRNIPVIGFIGRLEEQKGSDI-LAAAIPHFIK---------ENVQIIVLGTG 440 (611)
Q Consensus 379 ----~~~~~~~~~~~----~~~~~gl~~~~~~~~il~iGrl~~~Kg~d~-li~a~~~l~~---------~~~~lvivG~g 440 (611)
+.+.|..+|.+ +++++|++.+++.++++++.|+.++||+++ ++..+.++.+ .++++++.|++
T Consensus 495 ~~~~l~~~K~~nK~~L~~~l~~~~Gl~vdpd~l~~~~vkRl~eYKRq~Lnil~ii~~~~~i~~~~~~~~~p~q~If~GKA 574 (796)
T 1l5w_A 495 FRQQYREIKQANKVRLAEFVKVRTGIEINPQAIFDIQIKRLHEYKRQHLNLLHILALYKEIRENPQADRVPRVFLFGAKA 574 (796)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCCCTTSEEEEEESCCCGGGTHHHHHHHHHHHHHHHHTCTTCCCCCEEEEEECCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCcceEeeeecchhhcccCEeHHHHHHHHHHHhcCCCCCCCCeEEEEEecC
Confidence 34566667777 589999999999999999999999999999 8888887755 47999999999
Q ss_pred CchhHHH------HHHHHH------HCCC--ceEEecccChHHHHHHHHHccEEEeCCC--CCCCcHHHHHHHHcCCceE
Q 007247 441 KKPMEKQ------LEQLEI------LYPE--KARGVAKFNIPLAHMIIAGADFILIPSR--FEPCGLIQLHAMRYGTVPI 504 (611)
Q Consensus 441 ~~~~~~~------l~~l~~------~~~~--~v~~~~~~~~~~~~~i~~~aDv~l~pS~--~E~~gl~~lEAma~G~PvI 504 (611)
.+.++.. +..++. .+++ +|.+...|+..+++.++++||++++||+ +|+||+..+-+|.+|++.|
T Consensus 575 ~P~y~~aK~iIk~i~~va~~in~Dp~~~~~lKVvfl~nY~vslA~~I~~gaDv~l~~S~a~~EAsGTs~MKam~NGaL~i 654 (796)
T 1l5w_A 575 APGYYLAKNIIFAINKVADVINNDPLVGDKLKVVFLPDYCVSAAEKLIPAADISEQISTAGKEASGTGNMKLALNGALTV 654 (796)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHTCTTTGGGEEEEECSSCCHHHHHHHGGGCSEEEECCCTTTCCCCSHHHHHHHTTCEEE
T ss_pred ChhHHHHHHHHHHHHHHHHHhccccccCCceEEEEECCCCHHHHHHHhhhcceeecCCCCCCCCCchHHHHHHHcCCeee
Confidence 8655544 777776 5667 8999999999999999999999999999 8999999999999999999
Q ss_pred EcCCcccccceec--CcceEEecccccccccCCccCHHHHH---HHHHHHHHhcC-HHHHHHHHHHHHHhhCCchHHHHH
Q 007247 505 VASTGGLVDTVEE--GFTGFQMGSFSVDCEAVDPVDVAAVS---TTVRRALATYG-TQALAEMMKNGMAQDLSWKGPAKK 578 (611)
Q Consensus 505 ~s~~gg~~e~v~~--g~~G~l~~~~~~~~~~v~~~d~~~la---~~i~~ll~~~~-~~~~~~~~~~~~~~~fsw~~~a~~ 578 (611)
.+-.|...|+.++ .+|||+|| . +++++. .+..+..+-+. .+.+.++..+.+...|||... .+
T Consensus 655 GtLDGanvEi~e~vG~~NgF~FG----------~-~~~ev~~l~~~~y~a~~~y~~~~~~~~vvd~~~~g~fs~~~~-~~ 722 (796)
T 1l5w_A 655 GTLDGANVEIAEKVGEENIFIFG----------H-TVEQVKAILAKGYDPVKWRKKDKVLDAVLKELESGKYSDGDK-HA 722 (796)
T ss_dssp ECSCTTHHHHHHHHCGGGSEECS----------C-CHHHHHHHHHHCCCHHHHHHHCHHHHHHHHHHHHTTTTTTCT-TT
T ss_pred cCcCCeeeehhhccCCCcEEEec----------C-CHHHHHHHHHcccCHHHHhhcCHHHHHHHHHHHcCCCCCCcH-HH
Confidence 9988998888765 46999994 2 555555 33322222221 246788888888999999986 88
Q ss_pred HHHHHHHHHH
Q 007247 579 WEETLLNLEV 588 (611)
Q Consensus 579 ~~~~~~~l~~ 588 (611)
|.++|.+++.
T Consensus 723 y~~Ly~~L~~ 732 (796)
T 1l5w_A 723 FDQMLHSIGK 732 (796)
T ss_dssp THHHHHHTST
T ss_pred HHHHHHHHhc
Confidence 9999999864
No 20
>2c4m_A Glycogen phosphorylase; allosteric control, phosphate dependence, starch degrading, transferase, glycosyltransferase; HET: PLP; 1.9A {Corynebacterium callunae}
Probab=99.95 E-value=1.3e-27 Score=266.68 Aligned_cols=473 Identities=15% Similarity=0.138 Sum_probs=312.6
Q ss_pred ccccHHHHhccchHHHHhCCCeEEEEeecCCcc--------------cccCCC----------ceEEEEEeCCeeeEEEE
Q 007247 99 KTGGLGDVLGGLPPALAANGHRVMTIAPRYDQY--------------KDAWDT----------DVVIELKVGDKIEKVRF 154 (611)
Q Consensus 99 ~~GG~~~~~~~La~~L~~~Gh~V~vit~~~~~~--------------~~~~~~----------~~~~~~~~~~~~~~~~~ 154 (611)
..||+|+........++..|.-.+-+..+|... .+.|.. ...+.+++++..-..-.
T Consensus 112 gnGGLGrLAac~ldS~a~l~~p~~G~Gl~Y~~G~F~Q~i~dG~Q~E~~d~wl~~g~pwe~~r~~~~~~V~f~g~~v~a~~ 191 (796)
T 2c4m_A 112 GNGGLGRLAACFLDSAVTQDYPVTGYGLLYRFGLFRQSFNEGFQVEKPDPWREEEYPFTIRRASDQLVVCFDDMKTRAIP 191 (796)
T ss_dssp CCSHHHHHHHHHHHHHHHTTCCEEEEEECCSSCSCEEEEETTEEEEECCCSSSSCCTTSEECGGGCEEEEETTEEEEEEE
T ss_pred CCCcHHHHHHHHHHHHHhCCCCeEEEeecccCCCeEEEeeCCEEEeeCCccccCCCceeEecCCcEEEEEeCCEEEEEEE
Confidence 579999999999999999999999998887521 121211 22344455543211111
Q ss_pred EEeeecC-----ce---EEEEeCc-cch-h-------------hhcCCCC-ccccCCCCCCCCcchHHHH---HHHHHHH
Q 007247 155 FHCHKRG-----VD---RVFVDHP-WFL-A-------------KVWGKTQ-SKIYGPRTGEDYQDNQLRF---SLLCQAA 207 (611)
Q Consensus 155 ~~~~~~g-----v~---~~~i~~~-~~~-~-------------~~~~~~~-~~iy~~~~~~~~~~~~~r~---~~~~~~~ 207 (611)
......| +. .+..... .|. . +.+.+.- ..+|+..+ .+....+|+ .+|+.+.
T Consensus 192 yd~pi~gy~~~~~n~lrlW~a~~~~~f~l~~fn~gdy~~a~~~~~~~~~It~~LYp~D~--~~~Gk~lRL~Qe~ff~~a~ 269 (796)
T 2c4m_A 192 YDMPITGYGTHNVGTLRLWKAEPWEEFDYDAFNAQRFTDAIIERERVSDICRVLYPNDT--TYEGKKLRVRQQYFFTSAS 269 (796)
T ss_dssp EEEEECCTTCCCCEEEEEEEEEESSSSCHHHHHTTCHHHHHHHHHHHHHHHHSSSCCCS--SHHHHHHHHHHHHHHHHHH
T ss_pred EeccccCcCCCceEEEEEEecccccccchhhccCcchhhhhhchHhhhchhhcCcCCCC--CcchHHHHHHhHHHHHHHH
Confidence 1112212 11 1111100 010 0 0000000 13554321 122235555 5778888
Q ss_pred HHh-hHHhccCCCCCCCCCCCCCeEEEecCCccchHHH-HHHHhccCCCC-----C--CCceEEEEEecCccccc--cCc
Q 007247 208 LEA-PRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPC-YLKTMYKPKGM-----Y--KSAKVVFCIHNIAYQGR--FAF 276 (611)
Q Consensus 208 ~~~-~~~l~~~~~~~~~~~~~~Dvivh~hd~~~~~~~~-~l~~~~~~~~~-----~--~~~k~v~~iH~~~~~~~--~~~ 276 (611)
++. ++.+..... -+..--+|| +||+||||+++++. +++.....+|+ + .+.+++||+|++.++|. |+.
T Consensus 270 lq~ilr~~~~~~~-~l~~l~~p~-viHlNDtHpal~i~ElmR~l~d~~~~~~d~A~~i~~~~~vyT~HTl~~egle~wp~ 347 (796)
T 2c4m_A 270 LQAMIQDHLAHHK-DLSNFAEFH-SVQLNDTHPVLAIPELMRLLMDEHDMGWEESWAIVSKTFAYTNHTVLTEALEQWDE 347 (796)
T ss_dssp HHHHHHHHHHHSS-CSTTHHHHE-EEEEESSTTTTHHHHHHHHHHHHSCCCHHHHHHHHHHHEEEECCCSSSTTSCEEEH
T ss_pred HHHHHHHHHHhCC-ChhhcCCCe-EEEeCCChHHhHHHHHHHHHhhhcCCCHHHHHHHhhccEEEEecCchHHHhhhCCH
Confidence 874 554311000 000000478 99999999999888 66544211111 0 36789999999999986 665
Q ss_pred ccccccC---------CCcccccccccccC------CCCCCCCcchhHhHHHhhhccEEEecCHHHHHHHHcCcCCCccc
Q 007247 277 EDFGLLN---------LPAQFKSSFDFIDG------YNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVEL 341 (611)
Q Consensus 277 ~~~~~~~---------~~~~~~~~~~~~~~------~~~~~~~~~~~~~k~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~ 341 (611)
..+..+- ++..+........+ .........+++++.++..|+.|.+||+-+.+.+... .++ ..
T Consensus 348 ~l~~~~lpr~~~ii~~I~~~~~~~~~~~~~~~~~~~~~~i~~~~~vnMa~lai~~S~~VNgVS~lHae~ik~~-~f~-~~ 425 (796)
T 2c4m_A 348 QIFQQLFWRVWEIIAEIDRRFRLERAADGLDEETINRMAPIQHGTVHMAWIACYAAYSINGVAALHTEIIKAE-TLA-DW 425 (796)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHCSEETTEEEHHHHHHHHCSEEEESSHHHHHHHHHT-TTH-HH
T ss_pred HHHHHHhHHHHHHHcCcCHHHHHHHHhcCCcHhhhhcccceeCCcccHHHHHHHhcCceeeccHHHHHHhhhh-hhh-hH
Confidence 5543211 11111110000000 0000012357899999999999999999999999852 222 11
Q ss_pred chhhhccceeEeeCCcccCCc----CCCCccccccccC-----------------cch------hhhccHHHHHH----H
Q 007247 342 DNIIRKTGIKGIVNGMDVQEW----NPLTDKYIGVKYD-----------------AST------VMDAKPLLKEA----L 390 (611)
Q Consensus 342 ~~~~~~~~i~vI~Ngvd~~~~----~p~~~~~~~~~~~-----------------~~~------~~~~~~~~~~~----~ 390 (611)
-. +.+.++..|.||||...| +|..++.+...|+ ..+ +.+.|..+|.+ +
T Consensus 426 ~~-~~p~kf~~iTNGI~~rrWl~~~NP~l~~li~~~~g~~~w~~d~~~l~~l~~~~~d~~~~~~l~~~K~~nK~~L~~~l 504 (796)
T 2c4m_A 426 YA-LWPEKFNNKTNGVTPRRWLRMINPGLSDLLTRLSGSDDWVTDLDELKKLRSYADDKSVLEELRAIKAANKQDFAEWI 504 (796)
T ss_dssp HH-HCGGGEEECCCCBCTCCCCCTTCHHHHHHHHHHHSSSGGGGCGGGGGGGGGGGGCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH-cCccccccccCCcchHHhhcccCHhHHHHHHHhcCchhhhhChHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 234589999999999999 7877777766666 443 34566667777 5
Q ss_pred HHHhCCCCCCCCcEEEEEcCcccccCHHH-HHHHHHhccc---------CCcEEEEEeCCCchhHHH------HHHHHH-
Q 007247 391 QAEVGLPVDRNIPVIGFIGRLEEQKGSDI-LAAAIPHFIK---------ENVQIIVLGTGKKPMEKQ------LEQLEI- 453 (611)
Q Consensus 391 ~~~~gl~~~~~~~~il~iGrl~~~Kg~d~-li~a~~~l~~---------~~~~lvivG~g~~~~~~~------l~~l~~- 453 (611)
+++.|++.+++.++++++.|+.++||+++ ++..+.++.+ .++++++.|++.+.++.. +..++.
T Consensus 505 ~~~~Gl~vdpd~l~~~~vkRlheYKRq~Lnil~ii~~~~~i~~~~~~~~~p~q~If~GKA~P~y~~aK~iIk~i~~va~~ 584 (796)
T 2c4m_A 505 LERQGIEIDPESIFDVQIKRLHEYKRQLMNALYVLDLYFRIKEDGLTDIPARTVIFGAKAAPGYVRAKAIIKLINSIADL 584 (796)
T ss_dssp HHHHCCCCCTTSEEEEEECCCCGGGTHHHHHHHHHHHHHHHHTSCCCSSCCEEEEEECCCCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCCCCCcEEEEeecchhhcccCEeHHHHHHHHHHHhhCCCCCCCCeEEEEEecCCHhHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999 8888877753 379999999998655544 777776
Q ss_pred -----HCCC--ceEEecccChHHHHHHHHHccEEEeCCC--CCCCcHHHHHHHHcCCceEEcCCcccccceec--CcceE
Q 007247 454 -----LYPE--KARGVAKFNIPLAHMIIAGADFILIPSR--FEPCGLIQLHAMRYGTVPIVASTGGLVDTVEE--GFTGF 522 (611)
Q Consensus 454 -----~~~~--~v~~~~~~~~~~~~~i~~~aDv~l~pS~--~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~--g~~G~ 522 (611)
.+++ +|.+...|+..+++.++++||++++||+ +|+||+..+-+|.+|++.|.+-.|...|+.++ .+|||
T Consensus 585 in~dp~~~~~lKVvFl~nY~vslA~~I~~gaDv~l~~S~a~~EAsGTs~MKam~NGaL~iGtLDGanvEi~e~vG~~NgF 664 (796)
T 2c4m_A 585 VNNDPEVSPLLKVVFVENYNVSPAEHILPASDVSEQISTAGKEASGTSNMKFMMNGALTLGTMDGANVEIVDSVGEENAY 664 (796)
T ss_dssp HHTCTTTTTTEEEEEETTCCHHHHHHHGGGCSEEEECCCTTSCSCCHHHHHHHHTTCEEEEESSTHHHHHHHHHCGGGSE
T ss_pred hccccccCCceEEEEECCCCHHHHHHHhhhcceeecCCCCCCCCCchHHHHHHHcCCeEEeccCCeEeehhhhcCCCcEE
Confidence 6777 8999999999999999999999999999 89999999999999999999998998888765 46999
Q ss_pred EecccccccccCCccCHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHH
Q 007247 523 QMGSFSVDCEAVDPVDVAAVSTTVRRALATYG-TQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEV 588 (611)
Q Consensus 523 l~~~~~~~~~~v~~~d~~~la~~i~~ll~~~~-~~~~~~~~~~~~~~~fsw~~~a~~~~~~~~~l~~ 588 (611)
+||. ...++.++..+ .+..+-+. .+.+.++..+.+...|||... .+|.++|.+++.
T Consensus 665 ~FG~--------~~~ev~~l~~~-y~a~~~y~~~~~~~~vvd~~~~g~fs~~~~-~~y~~Ly~~L~~ 721 (796)
T 2c4m_A 665 IFGA--------RVEELPALRES-YKPYELYETVPGLKRALDALDNGTLNDNNS-GLFYDLKHSLIH 721 (796)
T ss_dssp EESC--------CTTTHHHHHHT-CCHHHHHHHSTTHHHHHHTTTSSSSCCTTC-CHHHHHHHHHHS
T ss_pred EecC--------chhhHHHHHHh-hChHHHhhcCHHHHHHHHHHHcCCCCCCCH-HHHHHHHHHHHh
Confidence 9952 23567777665 44433221 135777777777899999988 889999999874
No 21
>1uqt_A Alpha, alpha-trehalose-phosphate synthase; glycosyltransferase, transferase; HET: U2F; 2.0A {Escherichia coli} SCOP: c.87.1.6 PDB: 1uqu_A* 2wtx_A* 1gz5_A*
Probab=99.95 E-value=8.8e-27 Score=254.38 Aligned_cols=294 Identities=15% Similarity=0.140 Sum_probs=208.2
Q ss_pred CCCeEEEecCCccchHHHHHHHhccCCCCCCCceEEEEEecCccccccCccc-ccccCCCcccccccccccCCCCCCCCc
Q 007247 227 GEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFED-FGLLNLPAQFKSSFDFIDGYNKPVRGR 305 (611)
Q Consensus 227 ~~Dvivh~hd~~~~~~~~~l~~~~~~~~~~~~~k~v~~iH~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (611)
.+| |||+|||+..+++.+++... +++|+++++|... +... +..+ |
T Consensus 123 ~~D-iV~vHdyhl~~l~~~lr~~~------~~~~i~~~~H~pf-----p~~~~~~~l--p-------------------- 168 (482)
T 1uqt_A 123 DDD-IIWIHDYHLLPFAHELRKRG------VNNRIGFFLHIPF-----PTPEIFNAL--P-------------------- 168 (482)
T ss_dssp TTC-EEEEESGGGTTHHHHHHHTT------CCSCEEEECCSCC-----CCHHHHTTS--T--------------------
T ss_pred CCC-EEEEECchHHHHHHHHHHhC------CCCcEEEEEcCCC-----CCHHHHhhC--c--------------------
Confidence 369 99999999999999888753 5899999999532 2110 0000 0
Q ss_pred chhHhHHHhhhccEEEecCHHHHHHHHcCcC--CCccc------chhhhccceeEeeCCcccCCcCCCCccccccccCcc
Q 007247 306 KINWMKAGILESDMVLTVSPHYAQELVSGED--KGVEL------DNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDAS 377 (611)
Q Consensus 306 ~~~~~k~~~~~ad~vi~vS~~~~~~l~~~~~--~g~~~------~~~~~~~~i~vI~Ngvd~~~~~p~~~~~~~~~~~~~ 377 (611)
....+...+..+|.+.+.+..+.+.+.+... .+.+. ...-+..++.+||||+|.+.|.+....
T Consensus 169 ~~~~il~~ll~~d~i~f~~~~~~~~f~~~~~~~l~~~~~~~~~~~~~g~~~~v~vip~GID~~~f~~~~~~--------- 239 (482)
T 1uqt_A 169 TYDTLLEQLCDYDLLGFQTENDRLAFLDCLSNLTRVTTRSAKSHTAWGKAFRTEVYPIGIEPKEIAKQAAG--------- 239 (482)
T ss_dssp THHHHHHHHTTSSEEEESSHHHHHHHHHHHHHHSCEEEETTTEEEETTEEEEEEECCCCCCHHHHHHHHHS---------
T ss_pred cHHHHHHhhhccCeEEEECHHHHHHHHHHHHHHhCCccccCCeEEECCeEEEEEEEeccCCHHHHHHHhcC---------
Confidence 0122334556789998888877766542110 11100 000123478999999998877532100
Q ss_pred hhhhccHHHHHHHHHHhCCCCCCCCcEEEEEcCcccccCHHHHHHHHHhccc--C----CcEEEEEeCCC----c---hh
Q 007247 378 TVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--E----NVQIIVLGTGK----K---PM 444 (611)
Q Consensus 378 ~~~~~~~~~~~~~~~~~gl~~~~~~~~il~iGrl~~~Kg~d~li~a~~~l~~--~----~~~lvivG~g~----~---~~ 444 (611)
..... ...++++++ +.++|+++||+++.||++.+++|++++.+ + +++|+++|.+. + .+
T Consensus 240 ---~~~~~-~~~lr~~~~-----~~~vil~VgRl~~~Kgi~~ll~A~~~ll~~~p~~~~~v~Lv~vG~p~~~~~~~~~~l 310 (482)
T 1uqt_A 240 ---PLPPK-LAQLKAELK-----NVQNIFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAPTSRGDVQAYQDI 310 (482)
T ss_dssp ---CCCHH-HHHHHHHTT-----TCEEEEEECCBCGGGCHHHHHHHHHHHHHHCGGGTTTEEEEEECCBCSTTSHHHHHH
T ss_pred ---cchHH-HHHHHHHhC-----CCEEEEEEeCCcccCCHHHHHHHHHHHHHhCccccCcEEEEEEECCCccchHHHHHH
Confidence 00011 346777776 45799999999999999999999999865 2 57899999632 1 24
Q ss_pred HHHHHHHHHH----CC----CceEEe-cccChHHHHHHHHHccEEEeCCCCCCCcHHHHHHHHcCC-----ceEEcCCcc
Q 007247 445 EKQLEQLEIL----YP----EKARGV-AKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGT-----VPIVASTGG 510 (611)
Q Consensus 445 ~~~l~~l~~~----~~----~~v~~~-~~~~~~~~~~i~~~aDv~l~pS~~E~~gl~~lEAma~G~-----PvI~s~~gg 510 (611)
.+.+++++.+ ++ ..+.++ +.++.+.+..+|+.||++++||..||||++++|||+||+ |+|+|+.+|
T Consensus 311 ~~~l~~l~~~in~~~g~~~~~~v~~~~g~v~~~el~~ly~~ADv~v~pS~~EGfgLv~lEAmA~g~~~~~gpvV~S~~~G 390 (482)
T 1uqt_A 311 RHQLENEAGRINGKYGQLGWTPLYYLNQHFDRKLLMKIFRYSDVGLVTPLRDGMNLVAKEYVAAQDPANPGVLVLSQFAG 390 (482)
T ss_dssp HHHHHHHHHHHHHHHCBTTBCSEEEECSCCCHHHHHHHHHHCSEEEECCSSBSCCHHHHHHHHHSCTTSCCEEEEETTBG
T ss_pred HHHHHHHHHHHhhhcccCCCceEEEeCCCCCHHHHHHHHHHccEEEECCCcccCCchHHHHHHhCCCCCCCCEEEECCCC
Confidence 5556655433 11 125543 456788888999999999999999999999999999997 899999888
Q ss_pred cccceecCcceEEecccccccccCCccCHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HhhCCchHHHHHHHHHHHHH
Q 007247 511 LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGM--AQDLSWKGPAKKWEETLLNL 586 (611)
Q Consensus 511 ~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~--~~~fsw~~~a~~~~~~~~~l 586 (611)
..+.+. +|+++ +|.|++++|++|.+++++. ++.+.++++++. .+.|||+..++++++.|+++
T Consensus 391 ~~~~l~---~g~lv----------~p~d~~~lA~ai~~lL~~~-~~~r~~~~~~~~~~v~~~s~~~~a~~~l~~l~~~ 454 (482)
T 1uqt_A 391 AANELT---SALIV----------NPYDRDEVAAALDRALTMS-LAERISRHAEMLDVIVKNDINHWQECFISDLKQI 454 (482)
T ss_dssp GGGTCT---TSEEE----------CTTCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred CHHHhC---CeEEE----------CCCCHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence 888883 78887 9999999999999999862 344555555443 35699999999999999876
No 22
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=99.95 E-value=2.8e-27 Score=249.88 Aligned_cols=224 Identities=14% Similarity=0.068 Sum_probs=168.1
Q ss_pred HhHHHhh-hccEEEecCHHHHHHHHcCcCCCcccchhhhccceeEeeCC-cccCCcCCCCccccccccCcchhhhccHHH
Q 007247 309 WMKAGIL-ESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNG-MDVQEWNPLTDKYIGVKYDASTVMDAKPLL 386 (611)
Q Consensus 309 ~~k~~~~-~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~Ng-vd~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 386 (611)
+.+..+. .+|.++++|+..++.+.+ +|++.+ ++.+|+|| +|...+.+....
T Consensus 142 ~~~~~~~~~~d~ii~~s~~~~~~~~~---~g~~~~------~i~vi~n~~~d~~~~~~~~~~------------------ 194 (375)
T 3beo_A 142 MNRQLTGVMADLHFSPTAKSATNLQK---ENKDES------RIFITGNTAIDALKTTVKETY------------------ 194 (375)
T ss_dssp HHHHHHHHHCSEEEESSHHHHHHHHH---TTCCGG------GEEECCCHHHHHHHHHCCSSC------------------
T ss_pred hhhhHHhhhhheeeCCCHHHHHHHHH---cCCCcc------cEEEECChhHhhhhhhhhhhh------------------
Confidence 3344343 599999999999999875 565544 89999999 787655432100
Q ss_pred HHHHHHHhCCCCCCCCcEEEEEcCcccc-cCHHHHHHHHHhccc--CCcEEEEEeCCC-chhHHHHHHHHHHCCCceEEe
Q 007247 387 KEALQAEVGLPVDRNIPVIGFIGRLEEQ-KGSDILAAAIPHFIK--ENVQIIVLGTGK-KPMEKQLEQLEILYPEKARGV 462 (611)
Q Consensus 387 ~~~~~~~~gl~~~~~~~~il~iGrl~~~-Kg~d~li~a~~~l~~--~~~~lvivG~g~-~~~~~~l~~l~~~~~~~v~~~ 462 (611)
+..+++++ + ++.++++++||+.+. ||++.+++|++++.+ +++++++ |.|+ ..+.+.++++... .+++.+.
T Consensus 195 ~~~~~~~~--~--~~~~vl~~~gr~~~~~K~~~~li~a~~~l~~~~~~~~~i~-~~g~~~~~~~~~~~~~~~-~~~v~~~ 268 (375)
T 3beo_A 195 SHPVLEKL--G--NNRLVLMTAHRRENLGEPMRNMFRAIKRLVDKHEDVQVVY-PVHMNPVVRETANDILGD-YGRIHLI 268 (375)
T ss_dssp CCHHHHTT--T--TSEEEEEECCCGGGTTHHHHHHHHHHHHHHHHCTTEEEEE-ECCSCHHHHHHHHHHHTT-CTTEEEE
T ss_pred hHHHHHhc--c--CCCeEEEEecccccchhHHHHHHHHHHHHHhhCCCeEEEE-eCCCCHHHHHHHHHHhhc-cCCEEEe
Confidence 11233332 2 244578899999886 999999999999865 6888655 6564 2345556655322 2468877
Q ss_pred cccChHHHHHHHHHccEEEeCCCCCCCcHHHHHHHHcCCceEEcCC-cccccceecCcceEEecccccccccCCccCHHH
Q 007247 463 AKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVAST-GGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAA 541 (611)
Q Consensus 463 ~~~~~~~~~~i~~~aDv~l~pS~~E~~gl~~lEAma~G~PvI~s~~-gg~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~~ 541 (611)
+......+..+|+.||++++|| |.+++|||+||+|||+++. ||..|+++++ +|+++ ++ |+++
T Consensus 269 g~~~~~~~~~~~~~ad~~v~~s-----g~~~lEA~a~G~Pvi~~~~~~~~~e~v~~g-~g~~v----------~~-d~~~ 331 (375)
T 3beo_A 269 EPLDVIDFHNVAARSYLMLTDS-----GGVQEEAPSLGVPVLVLRDTTERPEGIEAG-TLKLA----------GT-DEET 331 (375)
T ss_dssp CCCCHHHHHHHHHTCSEEEECC-----HHHHHHHHHHTCCEEECSSCCSCHHHHHTT-SEEEC----------CS-CHHH
T ss_pred CCCCHHHHHHHHHhCcEEEECC-----CChHHHHHhcCCCEEEecCCCCCceeecCC-ceEEc----------CC-CHHH
Confidence 7666667888999999999999 7789999999999999964 9999999887 99986 65 9999
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHH--HhhCCchHHHHHHHHHHH
Q 007247 542 VSTTVRRALATYGTQALAEMMKNGM--AQDLSWKGPAKKWEETLL 584 (611)
Q Consensus 542 la~~i~~ll~~~~~~~~~~~~~~~~--~~~fsw~~~a~~~~~~~~ 584 (611)
++++|.+++++ ++.+.+|++++. .+.|+|+.+++.++++++
T Consensus 332 la~~i~~ll~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 374 (375)
T 3beo_A 332 IFSLADELLSD--KEAHDKMSKASNPYGDGRASERIVEAILKHFN 374 (375)
T ss_dssp HHHHHHHHHHC--HHHHHHHCCCCCTTCCSCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhC--hHhHhhhhhcCCCCCCCcHHHHHHHHHHHHhh
Confidence 99999999997 777778776652 367899999988887763
No 23
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.95 E-value=3.3e-27 Score=263.97 Aligned_cols=214 Identities=14% Similarity=0.072 Sum_probs=166.8
Q ss_pred hccEEEecCHHHHHHHHcCcCCCcccchhhhccceeEeeCCcccCCcCCCCccccccccCcchhhhccHHHHHHHHHHhC
Q 007247 316 ESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVG 395 (611)
Q Consensus 316 ~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~Ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 395 (611)
.+|.++++|+...+ ++ .++.+|||.++.....+... ....++++|
T Consensus 328 ~~d~~i~~s~~~~~-------~~---------~~i~~ipn~~~~~~~~~~~~-------------------~~~~r~~~~ 372 (568)
T 2vsy_A 328 LGDAFALPPALEPF-------YS---------EHVLRLQGAFQPSDTSRVVA-------------------EPPSRTQCG 372 (568)
T ss_dssp EECTTTSCTTTGGG-------CS---------SEEEECSSCSCCCCTTCCCC-------------------CCCCTGGGT
T ss_pred EECCCcCCcccccC-------Cc---------ceeEcCCCcCCCCCCCCCCC-------------------CCCCccccC
Confidence 47888888875432 21 17899999543321111100 111355677
Q ss_pred CCCCCCCcEEEEEcCcccccCHHHHHHHHHhccc--CCcEEEEEe-CCCchhHHHHHHHHHHCC---CceEEecccChHH
Q 007247 396 LPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLG-TGKKPMEKQLEQLEILYP---EKARGVAKFNIPL 469 (611)
Q Consensus 396 l~~~~~~~~il~iGrl~~~Kg~d~li~a~~~l~~--~~~~lvivG-~g~~~~~~~l~~l~~~~~---~~v~~~~~~~~~~ 469 (611)
++.+ .+++++||+.+ ||++.+++++.++.+ ++++|+|+| +|+ ..+.++++..+++ +++.+.+..+.+.
T Consensus 373 ~~~~---~~v~~~g~~~~-K~~~~li~a~~~l~~~~~~~~l~i~G~~g~--~~~~l~~~~~~~~l~~~~v~~~g~~~~~~ 446 (568)
T 2vsy_A 373 LPEQ---GVVLCCFNNSY-KLNPQSMARMLAVLREVPDSVLWLLSGPGE--ADARLRAFAHAQGVDAQRLVFMPKLPHPQ 446 (568)
T ss_dssp CCTT---SCEEEECCCGG-GCCHHHHHHHHHHHHHCTTCEEEEECCSTT--HHHHHHHHHHHTTCCGGGEEEECCCCHHH
T ss_pred CCCC---CEEEEeCCccc-cCCHHHHHHHHHHHHhCCCcEEEEecCCHH--HHHHHHHHHHHcCCChhHEEeeCCCCHHH
Confidence 7632 35669999999 999999999999865 799999999 676 5677777776653 5688888888777
Q ss_pred HHHHHHHccEEEeCCCCCCCcHHHHHHHHcCCceEE-------cCCc-------ccccceecCcceEEecccccccccCC
Q 007247 470 AHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIV-------ASTG-------GLVDTVEEGFTGFQMGSFSVDCEAVD 535 (611)
Q Consensus 470 ~~~i~~~aDv~l~pS~~E~~gl~~lEAma~G~PvI~-------s~~g-------g~~e~v~~g~~G~l~~~~~~~~~~v~ 535 (611)
+..+|+.||++|+||.+ +||++++|||+||+|||+ |+.| |+.|+|.
T Consensus 447 ~~~~~~~adv~v~ps~~-~~g~~~lEAma~G~Pvv~~~g~~~~s~~~~~~l~~~g~~e~v~------------------- 506 (568)
T 2vsy_A 447 YLARYRHADLFLDTHPY-NAHTTASDALWTGCPVLTTPGETFAARVAGSLNHHLGLDEMNV------------------- 506 (568)
T ss_dssp HHHHGGGCSEEECCSSS-CCSHHHHHHHHTTCCEEBCCCSSGGGSHHHHHHHHHTCGGGBC-------------------
T ss_pred HHHHHhcCCEEeeCCCC-CCcHHHHHHHhCCCCEEeccCCCchHHHHHHHHHHCCChhhhc-------------------
Confidence 88999999999999999 999999999999999999 9999 8888763
Q ss_pred ccCHHHHHHHHHHHHHhcCHHHHHHHHHHHH-----HhhCCchHHHHHHHHHHHHHHHcCCCC
Q 007247 536 PVDVAAVSTTVRRALATYGTQALAEMMKNGM-----AQDLSWKGPAKKWEETLLNLEVAGSEP 593 (611)
Q Consensus 536 ~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~-----~~~fsw~~~a~~~~~~~~~l~~~~~~~ 593 (611)
+|+++++++|.+++++ ++.+.+|++++. .+.|||+.++++++++|++++......
T Consensus 507 -~~~~~la~~i~~l~~~--~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~y~~~~~~~~~~ 566 (568)
T 2vsy_A 507 -ADDAAFVAKAVALASD--PAALTALHARVDVLRRASGVFHMDGFADDFGALLQALARRHGWL 566 (568)
T ss_dssp -SSHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHSSTTCHHHHHHHHHHHHHHHHHTTTCC
T ss_pred -CCHHHHHHHHHHHhcC--HHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 2889999999999998 777777776653 367999999999999999998765433
No 24
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=99.95 E-value=5.6e-27 Score=248.56 Aligned_cols=283 Identities=15% Similarity=0.076 Sum_probs=195.1
Q ss_pred CCCeEEEecCC-ccchHHHHHHHhccCCCCCCCceEEEEEecCccccccCcccccccCCCcccccccccccCCCCCCCCc
Q 007247 227 GEDVVFVANDW-HTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGR 305 (611)
Q Consensus 227 ~~Dvivh~hd~-~~~~~~~~l~~~~~~~~~~~~~k~v~~iH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (611)
+|| +||+|+. ...+....+... .++|++++.|+...... + . + .
T Consensus 86 ~pD-vv~~~~~~~~~~~~~~~a~~-------~~ip~v~~~~~~~~~~~--------------~-~----------~---~ 129 (384)
T 1vgv_A 86 KPD-VVLVHGDTTTTLATSLAAFY-------QRIPVGHVEAGLRTGDL--------------Y-S----------P---W 129 (384)
T ss_dssp CCS-EEEEETTCHHHHHHHHHHHT-------TTCCEEEESCCCCCSCT--------------T-S----------S---T
T ss_pred CCC-EEEEeCCchHHHHHHHHHHH-------HCCCEEEEecccccccc--------------c-C----------C---C
Confidence 699 8999864 333333333332 48999998885321000 0 0 0 0
Q ss_pred chhHhHHH-hhhccEEEecCHHHHHHHHcCcCCCcccchhhhccceeEeeCCc-ccCCcCCCCccccccccCcchhhhcc
Q 007247 306 KINWMKAG-ILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGM-DVQEWNPLTDKYIGVKYDASTVMDAK 383 (611)
Q Consensus 306 ~~~~~k~~-~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~Ngv-d~~~~~p~~~~~~~~~~~~~~~~~~~ 383 (611)
...+.+.. .+.+|.++++|+..++.+.+ +|++.+ ++.+++||+ |...+.+... ...
T Consensus 130 ~~~~~~~~~~~~~d~ii~~s~~~~~~l~~---~g~~~~------~i~vi~n~~~d~~~~~~~~~-------------~~~ 187 (384)
T 1vgv_A 130 PEEANRTLTGHLAMYHFSPTETSRQNLLR---ENVADS------RIFITGNTVIDALLWVRDQV-------------MSS 187 (384)
T ss_dssp THHHHHHHHHTTCSEEEESSHHHHHHHHH---TTCCGG------GEEECCCHHHHHHHHHHHHT-------------TTC
T ss_pred chHhhHHHHHhhccEEEcCcHHHHHHHHH---cCCChh------hEEEeCChHHHHHHhhhhcc-------------ccc
Confidence 11223333 34599999999999998875 566544 789999995 4321111000 000
Q ss_pred HHHHHHHHHHhC-CCCCCCCcEEEEEcCcccc-cCHHHHHHHHHhccc--CCcEEEEEeCCCchhHHHHHHHHHHCCCce
Q 007247 384 PLLKEALQAEVG-LPVDRNIPVIGFIGRLEEQ-KGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILYPEKA 459 (611)
Q Consensus 384 ~~~~~~~~~~~g-l~~~~~~~~il~iGrl~~~-Kg~d~li~a~~~l~~--~~~~lvivG~g~~~~~~~l~~l~~~~~~~v 459 (611)
......+++++| ++.+ +.++++++||+.++ ||++.+++|++++.+ ++++|++++.....+.+.++++.... +++
T Consensus 188 ~~~~~~~~~~~~~~~~~-~~~vl~~~gr~~~~~kg~~~li~a~~~l~~~~~~~~l~i~~g~~~~~~~~l~~~~~~~-~~v 265 (384)
T 1vgv_A 188 DKLRSELAANYPFIDPD-KKMILVTGHRRESFGRGFEEICHALADIATTHQDIQIVYPVHLNPNVREPVNRILGHV-KNV 265 (384)
T ss_dssp HHHHHHHHTTCTTCCTT-SEEEEEECCCBSSCCHHHHHHHHHHHHHHHHCTTEEEEEECCBCHHHHHHHHHHHTTC-TTE
T ss_pred hhhhHHHHHhccccCCC-CCEEEEEeCCccccchHHHHHHHHHHHHHhhCCCeEEEEEcCCCHHHHHHHHHHhhcC-CCE
Confidence 001234566677 6432 33578899999986 999999999999865 68999886332223566666664332 468
Q ss_pred EEecccChHHHHHHHHHccEEEeCCCCCCCcHHHHHHHHcCCceEEcCC-cccccceecCcceEEecccccccccCCccC
Q 007247 460 RGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVAST-GGLVDTVEEGFTGFQMGSFSVDCEAVDPVD 538 (611)
Q Consensus 460 ~~~~~~~~~~~~~i~~~aDv~l~pS~~E~~gl~~lEAma~G~PvI~s~~-gg~~e~v~~g~~G~l~~~~~~~~~~v~~~d 538 (611)
.+.+....+.+..+|+.||++++|| |.+++|||+||+|||+++. ||..|++++| +|+++ ++ |
T Consensus 266 ~~~g~~~~~~~~~~~~~ad~~v~~S-----g~~~lEA~a~G~PvI~~~~~~~~~e~v~~g-~g~lv----------~~-d 328 (384)
T 1vgv_A 266 ILIDPQEYLPFVWLMNHAWLILTDS-----GGIQEEAPSLGKPVLVMRDTTERPEAVTAG-TVRLV----------GT-D 328 (384)
T ss_dssp EEECCCCHHHHHHHHHHCSEEEESS-----STGGGTGGGGTCCEEEESSCCSCHHHHHHT-SEEEE----------CS-S
T ss_pred EEeCCCCHHHHHHHHHhCcEEEECC-----cchHHHHHHcCCCEEEccCCCCcchhhhCC-ceEEe----------CC-C
Confidence 7765555567778999999999999 4458999999999999986 9999999888 99987 66 9
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHH--HhhCCchHHHHHHHHHHHHHHH
Q 007247 539 VAAVSTTVRRALATYGTQALAEMMKNGM--AQDLSWKGPAKKWEETLLNLEV 588 (611)
Q Consensus 539 ~~~la~~i~~ll~~~~~~~~~~~~~~~~--~~~fsw~~~a~~~~~~~~~l~~ 588 (611)
+++++++|.+++++ ++.+.+|++++. .+.|+|+.+++.++++|++++.
T Consensus 329 ~~~la~~i~~ll~d--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 378 (384)
T 1vgv_A 329 KQRIVEEVTRLLKD--ENEYQAMSRAHNPYGDGQACSRILEALKNNRISLGS 378 (384)
T ss_dssp HHHHHHHHHHHHHC--HHHHHHHHSSCCTTCCSCHHHHHHHHHHHTCCCC--
T ss_pred HHHHHHHHHHHHhC--hHHHhhhhhccCCCcCCCHHHHHHHHHHHHHHhhcc
Confidence 99999999999997 777888876653 4678999999999888877664
No 25
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=99.94 E-value=1.6e-25 Score=215.47 Aligned_cols=184 Identities=30% Similarity=0.511 Sum_probs=156.9
Q ss_pred EeeCCcccCCcC--CCCccccccccCcchhhhccHHHHHHHHHHhCCCCCCCCcEEEEEcCcc-cccCHHHHHHHHHhcc
Q 007247 352 GIVNGMDVQEWN--PLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLE-EQKGSDILAAAIPHFI 428 (611)
Q Consensus 352 vI~Ngvd~~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~il~iGrl~-~~Kg~d~li~a~~~l~ 428 (611)
+||||+|.+.|. |... .....+..+++++|++ +.++|+|+||+. +.||++.+++++.++.
T Consensus 1 gipngvd~~~f~~~~~~~--------------~~~~~~~~~r~~~~~~---~~~~i~~~G~~~~~~K~~~~li~a~~~l~ 63 (200)
T 2bfw_A 1 GSHNGIDCSFWNESYLTG--------------SRDERKKSLLSKFGMD---EGVTFMFIGRFDRGQKGVDVLLKAIEILS 63 (200)
T ss_dssp ----CCCTTTSSGGGSCS--------------CHHHHHHHHHHHTTCC---SCEEEEEESCBCSSSSCHHHHHHHHHHHT
T ss_pred CCCCccChhhcccccccc--------------chhhHHHHHHHHcCCC---CCCEEEEeeccccccCCHHHHHHHHHHHH
Confidence 489999999998 7531 1122356788999987 345999999999 9999999999999995
Q ss_pred --c--CCcEEEEEeCCCchhHHHHHHHHHHCCCceEE-ecccChHHHHHHHHHccEEEeCCCCCCCcHHHHHHHHcCCce
Q 007247 429 --K--ENVQIIVLGTGKKPMEKQLEQLEILYPEKARG-VAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVP 503 (611)
Q Consensus 429 --~--~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~-~~~~~~~~~~~i~~~aDv~l~pS~~E~~gl~~lEAma~G~Pv 503 (611)
+ ++++|+|+|.+++.+.+.++++..+++ ++.+ .+..+.+.+..+++.||++++||.+|+||++++|||+||+||
T Consensus 64 ~~~~~~~~~l~i~G~~~~~~~~~l~~~~~~~~-~v~~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~Pv 142 (200)
T 2bfw_A 64 SKKEFQEMRFIIIGKGDPELEGWARSLEEKHG-NVKVITEMLSREFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIP 142 (200)
T ss_dssp TSGGGGGEEEEEECCBCHHHHHHHHHHHHHCT-TEEEECSCCCHHHHHHHHTTCSEEEECCSCCSSCHHHHHHHHTTCEE
T ss_pred hhccCCCeEEEEECCCChHHHHHHHHHHHhcC-CEEEEeccCCHHHHHHHHHHCCEEEECCCCCCccHHHHHHHHCCCCE
Confidence 4 689999999988667788888888877 7888 888888888899999999999999999999999999999999
Q ss_pred EEcCCcccccceecCcceEEecccccccccCCccCHHHHHHHHHHHHH-hcCHHHHHHHHHHHH
Q 007247 504 IVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALA-TYGTQALAEMMKNGM 566 (611)
Q Consensus 504 I~s~~gg~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~~la~~i~~ll~-~~~~~~~~~~~~~~~ 566 (611)
|+++.|++.|++ ++.+|+++ +++|+++++++|.++++ + ++.+.+|++++.
T Consensus 143 I~~~~~~~~e~~-~~~~g~~~----------~~~~~~~l~~~i~~l~~~~--~~~~~~~~~~a~ 193 (200)
T 2bfw_A 143 IASAVGGLRDII-TNETGILV----------KAGDPGELANAILKALELS--RSDLSKFRENCK 193 (200)
T ss_dssp EEESCHHHHHHC-CTTTCEEE----------CTTCHHHHHHHHHHHHHCC--HHHHHHHHHHHH
T ss_pred EEeCCCChHHHc-CCCceEEe----------cCCCHHHHHHHHHHHHhcC--HHHHHHHHHHHH
Confidence 999999999999 89999987 89999999999999999 8 777777777764
No 26
>3t5t_A Putative glycosyltransferase; GTB fold, pseudoglycosyltransferase; 1.70A {Streptomyces hygroscopicus} PDB: 4f97_A* 4f96_B* 4f9f_A* 3t7d_A*
Probab=99.94 E-value=4e-25 Score=239.06 Aligned_cols=293 Identities=14% Similarity=0.161 Sum_probs=212.5
Q ss_pred CCeEEEecCCccchHHHHHHHhccCCCCCCCceEEEEEecCccccccCcccc-cccCCCcccccccccccCCCCCCCCcc
Q 007247 228 EDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDF-GLLNLPAQFKSSFDFIDGYNKPVRGRK 306 (611)
Q Consensus 228 ~Dvivh~hd~~~~~~~~~l~~~~~~~~~~~~~k~v~~iH~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (611)
-| +|..||+|..++|.+++... +++++.|.+|.. ||...+ . -+|.. .
T Consensus 150 ~D-~VwVhDYhL~llp~~lR~~~------~~~~igfFlHiP-----fPs~e~f~--~Lp~~------------------~ 197 (496)
T 3t5t_A 150 DP-VYLVHDYQLVGVPALLREQR------PDAPILLFVHIP-----WPSADYWR--ILPKE------------------I 197 (496)
T ss_dssp SC-EEEEESGGGTTHHHHHHHHC------TTSCEEEECCSC-----CCCHHHHT--TSCHH------------------H
T ss_pred CC-EEEEeCccHhHHHHHHHhhC------CCCeEEEEEcCC-----CCCHHHHh--hCcHh------------------H
Confidence 47 99999999999999999876 789999999943 322110 1 01100 0
Q ss_pred hhHhHHHhhhccEEEecCHHHHHHHHcCcC--C-Ccccch-------hhhccceeEeeCCcccCCcCCCCccccccccCc
Q 007247 307 INWMKAGILESDMVLTVSPHYAQELVSGED--K-GVELDN-------IIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDA 376 (611)
Q Consensus 307 ~~~~k~~~~~ad~vi~vS~~~~~~l~~~~~--~-g~~~~~-------~~~~~~i~vI~Ngvd~~~~~p~~~~~~~~~~~~ 376 (611)
...+-.++..+|.|.+.++.+++.+.+.+. . |.+.+. .-+..++.++|+|+|+..|.+....
T Consensus 198 r~ell~gll~~DligF~t~~y~~~Fl~~~~r~l~g~~~~~~~~~v~~~gr~v~v~viP~GID~~~f~~~~~~-------- 269 (496)
T 3t5t_A 198 RTGILHGMLPATTIGFFADRWCRNFLESVADLLPDARIDREAMTVEWRGHRTRLRTMPLGYSPLTLDGRNPQ-------- 269 (496)
T ss_dssp HHHHHHHHTTSSEEEESSHHHHHHHHHHHHHHCTTCEEETTTTEEEETTEEEEEEECCCCBCGGGC----CC--------
T ss_pred HHHHHHHHHhCCEEEEecHHHHHHHHHHHHHHhcCCcccccCCeEEECCEEEEEEEeccEeCHHHhchhhHH--------
Confidence 133456788999999999999987654221 1 322110 0123478899999999998765320
Q ss_pred chhhhccHHHHHHHHHHhCCCCCCCCcEEEEEcCcccccCHHHHHHHHHhccc--C---CcEEEEEeCCC-------chh
Q 007247 377 STVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--E---NVQIIVLGTGK-------KPM 444 (611)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~gl~~~~~~~~il~iGrl~~~Kg~d~li~a~~~l~~--~---~~~lvivG~g~-------~~~ 444 (611)
...+++++++ ++++|+++||+++.||++.+++|+ ++.+ + ++.|+++|... .++
T Consensus 270 ---------~~~~lr~~~~-----~~~lIl~VgRLd~~KGi~~lL~Af-~ll~~~P~~~~v~Lv~Vg~psr~~~~~y~~l 334 (496)
T 3t5t_A 270 ---------LPEGIEEWAD-----GHRLVVHSGRTDPIKNAERAVRAF-VLAARGGGLEKTRMLVRMNPNRLYVPANADY 334 (496)
T ss_dssp ---------CCTTHHHHHT-----TSEEEEEEEESSGGGCHHHHHHHH-HHHHHTSSCTTEEEEEEEECCCTTSHHHHHH
T ss_pred ---------HHHHHHHHhC-----CceEEEEcccCccccCHHHHHHHH-HHHHhCcccceEEEEEEECCCCCCchHHHHH
Confidence 0134666666 457999999999999999999999 7754 4 36788887421 134
Q ss_pred HHHHHHHHHHC----CC-ceEEecccChHHHHHHHHHccEEEeCCCCCCCcHHHHHHHHcC---CceEEcCCccccccee
Q 007247 445 EKQLEQLEILY----PE-KARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYG---TVPIVASTGGLVDTVE 516 (611)
Q Consensus 445 ~~~l~~l~~~~----~~-~v~~~~~~~~~~~~~i~~~aDv~l~pS~~E~~gl~~lEAma~G---~PvI~s~~gg~~e~v~ 516 (611)
.+++++++.+. +. .+.+.+..+.+.+..+|+.||++++||..||||++.+|||+|| .|+|+|..+|..+.+.
T Consensus 335 ~~~l~~lv~~in~~~g~~~V~f~g~v~~~el~aly~~ADv~vv~SlrEGfgLv~~EamA~~~~~g~lVlSe~aGa~~~l~ 414 (496)
T 3t5t_A 335 VHRVETAVAEANAELGSDTVRIDNDNDVNHTIACFRRADLLIFNSTVDGQNLSTFEAPLVNERDADVILSETCGAAEVLG 414 (496)
T ss_dssp HHHHHHHHHHHHHHHCTTSEEEEECCCHHHHHHHHHHCSEEEECCSSBSCCSHHHHHHHHCSSCCEEEEETTBTTHHHHG
T ss_pred HHHHHHHHHHhccccCCcCEEEeCCCCHHHHHHHHHhccEEEECcccccCChhHHHHHHhCCCCCCEEEeCCCCCHHHhC
Confidence 55666665432 11 4777777778888899999999999999999999999999997 8999999999888884
Q ss_pred cCcceEEecccccccccCCccCHHHHHHHHHHHHHhcCHHHHHHHHHHH--HHhhCCchHHHHHHHHHHHHHHH
Q 007247 517 EGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNG--MAQDLSWKGPAKKWEETLLNLEV 588 (611)
Q Consensus 517 ~g~~G~l~~~~~~~~~~v~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~--~~~~fsw~~~a~~~~~~~~~l~~ 588 (611)
.+|+++ +|.|++++|++|.++|+++ ++++.++.++. ....+++...++.+++-+.....
T Consensus 415 --~~allV----------nP~D~~~lA~AI~~aL~m~-~~er~~r~~~~~~~V~~~d~~~W~~~fl~~L~~~~~ 475 (496)
T 3t5t_A 415 --EYCRSV----------NPFDLVEQAEAISAALAAG-PRQRAEAAARRRDAARPWTLEAWVQAQLDGLAADHA 475 (496)
T ss_dssp --GGSEEE----------CTTBHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHHH
T ss_pred --CCEEEE----------CCCCHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHhhccc
Confidence 368887 9999999999999999984 33334443333 35789999999999888877654
No 27
>2gj4_A Glycogen phosphorylase, muscle form; transferase; HET: PLR 2TH; 1.60A {Oryctolagus cuniculus} SCOP: c.87.1.4 PDB: 2gm9_A* 1abb_A* 3nc4_A* 3l79_A* 2pyd_A* 2pyi_A* 3l7a_A* 3l7b_A* 3l7c_A* 3l7d_A* 2qnb_A* 1c8l_A* 1axr_A* 1gpy_A* 1e1y_A* 1lwo_A* 1pyg_A* 1uzu_A* 1lwn_A* 1xkx_A* ...
Probab=99.93 E-value=4.4e-25 Score=247.06 Aligned_cols=338 Identities=17% Similarity=0.174 Sum_probs=249.5
Q ss_pred CCCeEEEecCCccchHHH-HHHHhccCCCCC-------CCceEEEEEecCccccc--cCcccccccCCCccc--------
Q 007247 227 GEDVVFVANDWHTSLIPC-YLKTMYKPKGMY-------KSAKVVFCIHNIAYQGR--FAFEDFGLLNLPAQF-------- 288 (611)
Q Consensus 227 ~~Dvivh~hd~~~~~~~~-~l~~~~~~~~~~-------~~~k~v~~iH~~~~~~~--~~~~~~~~~~~~~~~-------- 288 (611)
.|| +||+||||+++++. +++..+..+++- ....++||+|++.++|. |+...+..+- |..+
T Consensus 320 ~p~-viHlNDtHpal~i~ElmR~l~d~~~l~~d~A~~i~~~~~vfT~HTl~~eglE~wp~~l~~~lL-Pr~~~ii~~in~ 397 (824)
T 2gj4_A 320 DKV-AIQLNDTHPSLAIPELMRVLVDLERLDWDKAWEVTVKTCAYTNHTVLPEALERWPVHLLETLL-PRHLQIIYEINQ 397 (824)
T ss_dssp HHE-EEEEESSTTTTHHHHHHHHHHHTSCCCHHHHHHHHHHHEEEECCCCCGGGSCEEEHHHHHHHC-HHHHHHHHHHHH
T ss_pred CCc-EEEccCCchHhHHHHHHHHHHHhcCCCHHHHHHHhcCcEEEEeCCChHHHhhhchHHHHHHhC-chHHHHHHHHHH
Confidence 478 99999999999888 665543222210 23459999999999998 8766654321 1110
Q ss_pred ----------------ccccccccCCCCCCCCcchhHhHHHhhhccEEEecCHHHHHHHHcCcCCCcccchhhhccceeE
Q 007247 289 ----------------KSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKG 352 (611)
Q Consensus 289 ----------------~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~v 352 (611)
...+..++.- ....+++++.++..|+.|.+||+-+.+.+... .++ +.-. ..+.++..
T Consensus 398 ~f~~~~~~~~~~~~~~~~~~~~i~~~----~~~~vnMa~lai~~S~~VNgVS~lH~e~ik~~-~f~-~~~~-~~p~k~~~ 470 (824)
T 2gj4_A 398 RFLNRVAAAFPGDVDRLRRMSLVEEG----AVKRINMAHLCIAGSHAVNGVARIHSEILKKT-IFK-DFYE-LEPHKFQN 470 (824)
T ss_dssp HHHHHHHHHSTTCHHHHHHHCSEECS----SSCEEEHHHHHHHTCSCEEESSHHHHHHHHHT-TTH-HHHH-HCGGGEEE
T ss_pred HHHHHHHHHcCCcHHHHHhhhhhhhc----CCCcccHHHHHHHhcCceeeEcHHHHHHHhhH-HhH-HHHH-cChhhccc
Confidence 0001111100 12467899999999999999999999999742 222 1111 23458999
Q ss_pred eeCCcccCCc----CCCCccccccc-----------------cCc-chhh----hccHHHHHH----HHHHhCCCCCCCC
Q 007247 353 IVNGMDVQEW----NPLTDKYIGVK-----------------YDA-STVM----DAKPLLKEA----LQAEVGLPVDRNI 402 (611)
Q Consensus 353 I~Ngvd~~~~----~p~~~~~~~~~-----------------~~~-~~~~----~~~~~~~~~----~~~~~gl~~~~~~ 402 (611)
|.||||...| +|..++.+... |.. .++. +.|..+|.+ ++++.|++.+++.
T Consensus 471 iTNGI~~rrWl~~~NP~l~~lI~~~ig~~W~~~~~~l~~L~~y~~d~~~~~~~~~~K~~nK~~la~~l~~~~Gl~vdpd~ 550 (824)
T 2gj4_A 471 KTNGITPRRWLVLCNPGLAEIIAERIGEEYISDLDQLRKLLSYVDDEAFIRDVAKVKQENKLKFAAYLEREYKVHINPNS 550 (824)
T ss_dssp CCCCBCTCCCCCCTCHHHHHHHHHHHCSGGGGCGGGGGGGGGGTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCTTS
T ss_pred ccCCcChhhhcccCCHhHHHHHHHhcCchhhhCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCc
Confidence 9999999999 77666555544 654 2331 455556666 8899999999999
Q ss_pred cEEEEEcCcccccCHHHH-HHHHHhcc---c-C-----CcEEEEEeCCCchhHHH------HHHHHHHC------CC--c
Q 007247 403 PVIGFIGRLEEQKGSDIL-AAAIPHFI---K-E-----NVQIIVLGTGKKPMEKQ------LEQLEILY------PE--K 458 (611)
Q Consensus 403 ~~il~iGrl~~~Kg~d~l-i~a~~~l~---~-~-----~~~lvivG~g~~~~~~~------l~~l~~~~------~~--~ 458 (611)
++++++.|+.++||++++ +..+.++. + + +++|++.|++.+.++.. +..++..+ ++ +
T Consensus 551 l~~g~vkRl~eYKRq~L~~l~~i~~~~~i~~~~~~~~~p~q~If~GKA~P~y~~aK~iIkli~~va~~in~Dp~v~~~lK 630 (824)
T 2gj4_A 551 LFDVQVKRIHEYKRQLLNCLHVITLYNRIKKEPNKFVVPRTVMIGGKAAPGYHMAKMIIKLITAIGDVVNHDPVVGDRLR 630 (824)
T ss_dssp EEEEEESCCCGGGTHHHHHHHHHHHHHHHHHCTTSCCCCEEEEEECCCCTTCHHHHHHHHHHHHHHHHHTTCTTTGGGEE
T ss_pred ceEeeeecchhhcchhhHHHHHHHHHHHHHhCCCCCCCCEEEEEEEeCCHhHHHHHHHHHHHHHHHHHhccCcccCCceE
Confidence 999999999999999998 88887774 2 2 67999999998655444 77777644 45 7
Q ss_pred eEEecccChHHHHHHHHHccEEEeCCC--CCCCcHHHHHHHHcCCceEEcCCccccccee--cCcceEEecccccccccC
Q 007247 459 ARGVAKFNIPLAHMIIAGADFILIPSR--FEPCGLIQLHAMRYGTVPIVASTGGLVDTVE--EGFTGFQMGSFSVDCEAV 534 (611)
Q Consensus 459 v~~~~~~~~~~~~~i~~~aDv~l~pS~--~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~--~g~~G~l~~~~~~~~~~v 534 (611)
+.+...|+..+++.++++||++++||+ +|+||+..+-||.+|++.|++-.|...|+.+ ..+|||+||
T Consensus 631 VvFl~nYdvslA~~I~~gaDv~l~~S~ag~EAsGTs~MKamlNGaLtigtlDGanvEi~e~vG~~Ngf~FG--------- 701 (824)
T 2gj4_A 631 VIFLENYRVSLAEKVIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTMDGANVEMAEEAGEENFFIFG--------- 701 (824)
T ss_dssp EEEETTCCHHHHHHHGGGCSEEEECCCTTSCSCCSHHHHHHHTTCEEEECSCTTHHHHHHHHCGGGSEECS---------
T ss_pred EEEECCCCHHHHHHHhhhcceeecCCCCCCCCCchHHHHHHHcCceEEEEecCccchhhhccCCCCEEEeC---------
Confidence 899999999999999999999999999 8999999999999999999999998888764 356899984
Q ss_pred CccCHHHHHHHHH-------HHHHhcCHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHH
Q 007247 535 DPVDVAAVSTTVR-------RALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEV 588 (611)
Q Consensus 535 ~~~d~~~la~~i~-------~ll~~~~~~~~~~~~~~~~~~~fsw~~~a~~~~~~~~~l~~ 588 (611)
. .++++ ..+. .+.+. .+.+.++..+.+...|||... ++|..+|.+++.
T Consensus 702 -~-~~~ev-~~l~~~~~~a~~~Y~~--~~~l~~v~d~i~~g~fs~~~~-~~y~~ly~~l~~ 756 (824)
T 2gj4_A 702 -M-RVEDV-DRLDQRGYNAQEYYDR--IPELRQIIEQLSSGFFSPKQP-DLFKDIVNMLMH 756 (824)
T ss_dssp -C-CHHHH-HHHHHHCCCHHHHHHH--CHHHHHHHHHHHHTTTCTTST-TTTHHHHHHHHH
T ss_pred -C-cHHHH-HHHHHcCCCHHHHhcC--CHHHHHHHHHHHhCCCCCCCh-HHHHHHHHHHHc
Confidence 2 25555 3432 12222 356777777778899999998 889999999874
No 28
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=99.92 E-value=2.3e-24 Score=201.01 Aligned_cols=160 Identities=16% Similarity=0.165 Sum_probs=133.0
Q ss_pred CcEEEEEcCcccccCHHHHHHHHHhccc-CCcEEEEEeCCCchhHHHHHHHHHHCCCceEEecccChHHHHHHHHHccEE
Q 007247 402 IPVIGFIGRLEEQKGSDILAAAIPHFIK-ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFI 480 (611)
Q Consensus 402 ~~~il~iGrl~~~Kg~d~li~a~~~l~~-~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~i~~~aDv~ 480 (611)
+++|+|+||+.+.||++.+++|+.++.+ ++++|+|+|+|+ ..+.++++..+++.++.+ +..+.+.+..+|+.||++
T Consensus 2 ~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~~~~l~i~G~g~--~~~~~~~~~~~~~~~v~~-g~~~~~~~~~~~~~adv~ 78 (166)
T 3qhp_A 2 PFKIAMVGRYSNEKNQSVLIKAVALSKYKQDIVLLLKGKGP--DEKKIKLLAQKLGVKAEF-GFVNSNELLEILKTCTLY 78 (166)
T ss_dssp CEEEEEESCCSTTTTHHHHHHHHHTCTTGGGEEEEEECCST--THHHHHHHHHHHTCEEEC-CCCCHHHHHHHHTTCSEE
T ss_pred ceEEEEEeccchhcCHHHHHHHHHHhccCCCeEEEEEeCCc--cHHHHHHHHHHcCCeEEE-eecCHHHHHHHHHhCCEE
Confidence 3689999999999999999999999965 699999999987 467777777776666666 666778888999999999
Q ss_pred EeCCCCCCCcHHHHHHHHcCC-ceEE-cCCcccccceecCcceEEecccccccccCCccCHHHHHHHHHHHHHhcCHHHH
Q 007247 481 LIPSRFEPCGLIQLHAMRYGT-VPIV-ASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQAL 558 (611)
Q Consensus 481 l~pS~~E~~gl~~lEAma~G~-PvI~-s~~gg~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~~la~~i~~ll~~~~~~~~ 558 (611)
++||.+|+||++++|||+||+ |||+ ++.|+..+++.++.+ ++ +++|+++++++|.+++++ ++.+
T Consensus 79 v~ps~~e~~~~~~~Eama~G~vPvi~~~~~~~~~~~~~~~~~--~~----------~~~~~~~l~~~i~~l~~~--~~~~ 144 (166)
T 3qhp_A 79 VHAANVESEAIACLEAISVGIVPVIANSPLSATRQFALDERS--LF----------EPNNAKDLSAKIDWWLEN--KLER 144 (166)
T ss_dssp EECCCSCCCCHHHHHHHHTTCCEEEECCTTCGGGGGCSSGGG--EE----------CTTCHHHHHHHHHHHHHC--HHHH
T ss_pred EECCcccCccHHHHHHHhcCCCcEEeeCCCCchhhhccCCce--EE----------cCCCHHHHHHHHHHHHhC--HHHH
Confidence 999999999999999999998 9999 568999999988766 33 889999999999999997 7777
Q ss_pred HHHHHHHH--HhhCCchHHHHH
Q 007247 559 AEMMKNGM--AQDLSWKGPAKK 578 (611)
Q Consensus 559 ~~~~~~~~--~~~fsw~~~a~~ 578 (611)
.++++++. .++|||+.++++
T Consensus 145 ~~~~~~~~~~~~~~s~~~~~~~ 166 (166)
T 3qhp_A 145 ERMQNEYAKSALNYTLENSVIQ 166 (166)
T ss_dssp HHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHCChhhhhcC
Confidence 77777663 488999998764
No 29
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=99.91 E-value=4.1e-22 Score=210.72 Aligned_cols=221 Identities=14% Similarity=0.052 Sum_probs=162.9
Q ss_pred hhhccEEEecCHHHHHHHHcCcCCCcccchhhhccceeEeeCCc-ccCCcCCCCccccccccCcchhhhccHHHHHHHHH
Q 007247 314 ILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGM-DVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQA 392 (611)
Q Consensus 314 ~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~Ngv-d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (611)
...+|.++++|+..++.+.+ +|++.+ ++.+++|++ |...+.+. +..+++
T Consensus 144 ~~~~~~~~~~s~~~~~~l~~---~g~~~~------ki~vi~n~~~d~~~~~~~---------------------~~~~~~ 193 (376)
T 1v4v_A 144 DVLTDLDFAPTPLAKANLLK---EGKREE------GILVTGQTGVDAVLLAAK---------------------LGRLPE 193 (376)
T ss_dssp HHHCSEEEESSHHHHHHHHT---TTCCGG------GEEECCCHHHHHHHHHHH---------------------HCCCCT
T ss_pred HHHhceeeCCCHHHHHHHHH---cCCCcc------eEEEECCchHHHHhhhhh---------------------hhHHHH
Confidence 45689999999999999885 566544 788999864 42111000 000111
Q ss_pred HhCCCCCCCCcEEEEEcCcccccCHHHHHHHHHhccc--CCcEEEEE-eCCCchhHHHHHHHHHHCCCceEEecccChHH
Q 007247 393 EVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVL-GTGKKPMEKQLEQLEILYPEKARGVAKFNIPL 469 (611)
Q Consensus 393 ~~gl~~~~~~~~il~iGrl~~~Kg~d~li~a~~~l~~--~~~~lviv-G~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~ 469 (611)
++ + ++.++++++||+..+||++.+++|++++.+ ++++++++ |++. ...+.++++... .+++.+.+......
T Consensus 194 ~~--~--~~~~vl~~~gr~~~~k~~~~ll~a~~~l~~~~~~~~lv~~~g~~~-~~~~~l~~~~~~-~~~v~~~g~~g~~~ 267 (376)
T 1v4v_A 194 GL--P--EGPYVTVTMHRRENWPLLSDLAQALKRVAEAFPHLTFVYPVHLNP-VVREAVFPVLKG-VRNFVLLDPLEYGS 267 (376)
T ss_dssp TC--C--SSCEEEECCCCGGGGGGHHHHHHHHHHHHHHCTTSEEEEECCSCH-HHHHHHHHHHTT-CTTEEEECCCCHHH
T ss_pred hc--C--CCCEEEEEeCcccchHHHHHHHHHHHHHHhhCCCeEEEEECCCCH-HHHHHHHHHhcc-CCCEEEECCCCHHH
Confidence 11 1 234567789999989999999999999865 68998886 6553 345666666433 24677776555556
Q ss_pred HHHHHHHccEEEeCCCCCCCcHHHHHHHHcCCceEEc-CCcccccceecCcceEEecccccccccCCccCHHHHHHHHHH
Q 007247 470 AHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVA-STGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRR 548 (611)
Q Consensus 470 ~~~i~~~aDv~l~pS~~E~~gl~~lEAma~G~PvI~s-~~gg~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~~la~~i~~ 548 (611)
+..+|+.||+++.|| | |+ ++|||+||+|+|++ +.||..++++++ +|+++ + .|+++++++|.+
T Consensus 268 ~~~~~~~ad~~v~~S--~--g~-~lEA~a~G~PvI~~~~~~~~~~~~~~g-~g~lv----------~-~d~~~la~~i~~ 330 (376)
T 1v4v_A 268 MAALMRASLLLVTDS--G--GL-QEEGAALGVPVVVLRNVTERPEGLKAG-ILKLA----------G-TDPEGVYRVVKG 330 (376)
T ss_dssp HHHHHHTEEEEEESC--H--HH-HHHHHHTTCCEEECSSSCSCHHHHHHT-SEEEC----------C-SCHHHHHHHHHH
T ss_pred HHHHHHhCcEEEECC--c--CH-HHHHHHcCCCEEeccCCCcchhhhcCC-ceEEC----------C-CCHHHHHHHHHH
Confidence 778999999999999 2 44 88999999999997 478888887654 79875 4 599999999999
Q ss_pred HHHhcCHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHcCC
Q 007247 549 ALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGS 591 (611)
Q Consensus 549 ll~~~~~~~~~~~~~~~~~~~fsw~~~a~~~~~~~~~l~~~~~ 591 (611)
++++ ++.+.+|+++ .+.|+|...++++.+.+++++....
T Consensus 331 ll~d--~~~~~~~~~~--~~~~~~~~~~~~i~~~i~~~~~~~~ 369 (376)
T 1v4v_A 331 LLEN--PEELSRMRKA--KNPYGDGKAGLMVARGVAWRLGLGP 369 (376)
T ss_dssp HHTC--HHHHHHHHHS--CCSSCCSCHHHHHHHHHHHHTTSSC
T ss_pred HHhC--hHhhhhhccc--CCCCCCChHHHHHHHHHHHHhcccc
Confidence 9997 7778888753 4678888999999999998876433
No 30
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=99.86 E-value=4.8e-21 Score=181.11 Aligned_cols=141 Identities=16% Similarity=0.205 Sum_probs=125.6
Q ss_pred CCCcEEEEEcCcccccCHHHHHHHHHhcccCCcEEEEEeCCCc--hhHHHHHHHHHHCCCceEEecccChHHHHHHHHHc
Q 007247 400 RNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKK--PMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGA 477 (611)
Q Consensus 400 ~~~~~il~iGrl~~~Kg~d~li~a~~~l~~~~~~lvivG~g~~--~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~i~~~a 477 (611)
.+.++|+|+|++.+.||++.+++++.++ ++++|+|+|.++. .+.+.++++....++++.+.+..+.+.+..+++.|
T Consensus 21 ~~~~~i~~~G~~~~~Kg~~~li~a~~~l--~~~~l~i~G~~~~~~~l~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~a 98 (177)
T 2f9f_A 21 CYGDFWLSVNRIYPEKRIELQLEVFKKL--QDEKLYIVGWFSKGDHAERYARKIMKIAPDNVKFLGSVSEEELIDLYSRC 98 (177)
T ss_dssp CCCSCEEEECCSSGGGTHHHHHHHHHHC--TTSCEEEEBCCCTTSTHHHHHHHHHHHSCTTEEEEESCCHHHHHHHHHHC
T ss_pred CCCCEEEEEeccccccCHHHHHHHHHhC--CCcEEEEEecCccHHHHHHHHHhhhcccCCcEEEeCCCCHHHHHHHHHhC
Confidence 3567899999999999999999999998 6899999999873 45555554444566789999888988888999999
Q ss_pred cEEEeCCCCCCCcHHHHHHHHcCCceEEcCCcccccceecCcceEEecccccccccCCccCHHHHHHHHHHHHHhc
Q 007247 478 DFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY 553 (611)
Q Consensus 478 Dv~l~pS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~~la~~i~~ll~~~ 553 (611)
|++++||..|+||++++|||+||+|||+++.|+..|++.++.+|++ + +.|+++++++|.++++++
T Consensus 99 di~v~ps~~e~~~~~~~Eama~G~PvI~~~~~~~~e~i~~~~~g~~----------~-~~d~~~l~~~i~~l~~~~ 163 (177)
T 2f9f_A 99 KGLLCTAKDEDFGLTPIEAMASGKPVIAVNEGGFKETVINEKTGYL----------V-NADVNEIIDAMKKVSKNP 163 (177)
T ss_dssp SEEEECCSSCCSCHHHHHHHHTTCCEEEESSHHHHHHCCBTTTEEE----------E-CSCHHHHHHHHHHHHHCT
T ss_pred CEEEeCCCcCCCChHHHHHHHcCCcEEEeCCCCHHHHhcCCCccEE----------e-CCCHHHHHHHHHHHHhCH
Confidence 9999999999999999999999999999999999999999999996 3 789999999999999984
No 31
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=99.83 E-value=2.6e-19 Score=189.77 Aligned_cols=186 Identities=13% Similarity=0.043 Sum_probs=137.1
Q ss_pred HhHHHhhhccEEEecCHHHHHHHHcCcCCCcccchhhhccceeEeeCCcccCCcCCCCccccccccCcchhhhccHHHHH
Q 007247 309 WMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKE 388 (611)
Q Consensus 309 ~~k~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~Ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 388 (611)
+++..+..+|.++++|+..++.+.+ +|++ ++.+|+|+. |.+...+
T Consensus 146 ~~~~~~~~~d~ii~~S~~~~~~l~~---~g~~--------ki~vi~n~~----f~~~~~~-------------------- 190 (374)
T 2xci_A 146 IEKILSKKFDLIIMRTQEDVEKFKT---FGAK--------RVFSCGNLK----FICQKGK-------------------- 190 (374)
T ss_dssp HHHHHHTTCSEEEESCHHHHHHHHT---TTCC--------SEEECCCGG----GCCCCCS--------------------
T ss_pred HHHHHHHhCCEEEECCHHHHHHHHH---cCCC--------eEEEcCCCc----cCCCcCh--------------------
Confidence 4566788999999999999999986 4543 688999973 2221100
Q ss_pred HHHHHhCCCCCCCCcEEEEEcCcccccCHHHHHHHHHhccc--CCcEEEEEeCCCchhHHHHHHHHHHCCCc--------
Q 007247 389 ALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILYPEK-------- 458 (611)
Q Consensus 389 ~~~~~~gl~~~~~~~~il~iGrl~~~Kg~d~li~a~~~l~~--~~~~lvivG~g~~~~~~~l~~l~~~~~~~-------- 458 (611)
++ .+ +.+++++.|+ ..||.+.+++|++++.+ ++++|+|+|+|+. ..+.++++..+.+..
T Consensus 191 --~~--~l----~~~vi~~~~~--~~k~~~~ll~A~~~l~~~~p~~~lvivG~g~~-~~~~l~~~~~~~gl~~~~~~~~~ 259 (374)
T 2xci_A 191 --GI--KL----KGEFIVAGSI--HTGEVEIILKAFKEIKKTYSSLKLILVPRHIE-NAKIFEKKARDFGFKTSFFENLE 259 (374)
T ss_dssp --CC--CC----SSCEEEEEEE--CGGGHHHHHHHHHHHHTTCTTCEEEEEESSGG-GHHHHHHHHHHTTCCEEETTCCC
T ss_pred --hh--hh----cCCEEEEEeC--CCchHHHHHHHHHHHHhhCCCcEEEEECCCHH-HHHHHHHHHHHCCCceEEecCCC
Confidence 00 01 1256777665 46899999999999965 6899999998863 224556666554421
Q ss_pred --eEEecccChHHHHHHHHHccEEEeCCCC-CCCcHHHHHHHHcCCceEEc-CCcccccceecC-cceEEeccccccccc
Q 007247 459 --ARGVAKFNIPLAHMIIAGADFILIPSRF-EPCGLIQLHAMRYGTVPIVA-STGGLVDTVEEG-FTGFQMGSFSVDCEA 533 (611)
Q Consensus 459 --v~~~~~~~~~~~~~i~~~aDv~l~pS~~-E~~gl~~lEAma~G~PvI~s-~~gg~~e~v~~g-~~G~l~~~~~~~~~~ 533 (611)
+.. ..+. +.+..+|+.||++++||.+ |++|++++|||+||+|||++ +.+++.|++.+. .+|+++
T Consensus 260 ~~v~~-~~~~-~dl~~~y~~aDv~vl~ss~~e~gg~~~lEAmA~G~PVI~~~~~~~~~e~~~~~~~~G~l~--------- 328 (374)
T 2xci_A 260 GDVIL-VDRF-GILKELYPVGKIAIVGGTFVNIGGHNLLEPTCWGIPVIYGPYTHKVNDLKEFLEKEGAGF--------- 328 (374)
T ss_dssp SSEEE-CCSS-SCHHHHGGGEEEEEECSSSSSSCCCCCHHHHTTTCCEEECSCCTTSHHHHHHHHHTTCEE---------
T ss_pred CcEEE-ECCH-HHHHHHHHhCCEEEECCcccCCCCcCHHHHHHhCCCEEECCCccChHHHHHHHHHCCCEE---------
Confidence 222 2222 3456799999998888765 67899999999999999985 689999988763 467776
Q ss_pred CCccCHHHHHHHHHHHHHh
Q 007247 534 VDPVDVAAVSTTVRRALAT 552 (611)
Q Consensus 534 v~~~d~~~la~~i~~ll~~ 552 (611)
.++|+++|+++|.+++++
T Consensus 329 -~~~d~~~La~ai~~ll~d 346 (374)
T 2xci_A 329 -EVKNETELVTKLTELLSV 346 (374)
T ss_dssp -ECCSHHHHHHHHHHHHHS
T ss_pred -EeCCHHHHHHHHHHHHhH
Confidence 779999999999999986
No 32
>3rhz_A GTF3, nucleotide sugar synthetase-like protein; glycosyltransferase, transferase; HET: UDP; 1.90A {Streptococcus parasanguinis} PDB: 3qkw_A*
Probab=99.81 E-value=3.7e-18 Score=177.85 Aligned_cols=220 Identities=16% Similarity=0.082 Sum_probs=156.9
Q ss_pred CCceEEEEEecCccccccCcccccccCCCcccccccccccCCCCCCCCcchhHhHHHhhhccEEEecCHHHHHHHHcCcC
Q 007247 257 KSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGED 336 (611)
Q Consensus 257 ~~~k~v~~iH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~vi~vS~~~~~~l~~~~~ 336 (611)
.++|+++++||+.+.. +. .. . .....++..++.||.|+++|+.+++.+.+
T Consensus 101 ~~~k~i~~ihDl~pl~-~~----------~~-------------~---~~~~~E~~~y~~aD~Ii~~S~~~~~~l~~--- 150 (339)
T 3rhz_A 101 YDIKIVLFIHDVVPLM-FS----------GN-------------F---YLMDRTIAYYNKADVVVAPSQKMIDKLRD--- 150 (339)
T ss_dssp SSCEEEEEESCCHHHH-CG----------GG-------------G---GGHHHHHHHHTTCSEEEESCHHHHHHHHH---
T ss_pred cCCEEEEEecccHHhh-Cc----------cc-------------h---hhHHHHHHHHHHCCEEEECCHHHHHHHHH---
Confidence 3899999999875521 10 00 0 12235678899999999999999999986
Q ss_pred CCcccchhhhccceeEeeCCcccCCcCCCCccccccccCcchhhhccHHHHHHHHHHhCCCCCCCCcEEEEEcCcccccC
Q 007247 337 KGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKG 416 (611)
Q Consensus 337 ~g~~~~~~~~~~~i~vI~Ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~il~iGrl~~~Kg 416 (611)
+|++.. ++..+++ |+...+.. .....+.++|+|+|++.....
T Consensus 151 ~G~~~~------ki~~~~~------~~~~~~~~--------------------------~~~~~~~~~i~yaG~l~k~~~ 192 (339)
T 3rhz_A 151 FGMNVS------KTVVQGM------WDHPTQAP--------------------------MFPAGLKREIHFPGNPERFSF 192 (339)
T ss_dssp TTCCCS------EEEECCS------CCCCCCCC--------------------------CCCCEEEEEEEECSCTTTCGG
T ss_pred cCCCcC------ceeecCC------CCccCccc--------------------------ccccCCCcEEEEeCCcchhhH
Confidence 566533 4533332 21111000 001124478999999995322
Q ss_pred HHHHHHHHHhcccCCcEEEEEeCCCchhHHHHHHHHHHCCCceEEecccChHHHHHHHHHccEEEeCCCC-------CCC
Q 007247 417 SDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRF-------EPC 489 (611)
Q Consensus 417 ~d~li~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~i~~~aDv~l~pS~~-------E~~ 489 (611)
+..+ .++++|+|+|+|+.. .++ ++.+.+.++.+.++.+++.+|+.++.... .++
T Consensus 193 -------L~~l-~~~~~f~ivG~G~~~----------~l~-nV~f~G~~~~~el~~~l~~~~~~lv~~~~~~~~y~~~~~ 253 (339)
T 3rhz_A 193 -------VKEW-KYDIPLKVYTWQNVE----------LPQ-NVHKINYRPDEQLLMEMSQGGFGLVWMDDKDKEYQSLYC 253 (339)
T ss_dssp -------GGGC-CCSSCEEEEESCCCC----------CCT-TEEEEECCCHHHHHHHHHTEEEEECCCCGGGHHHHTTCC
T ss_pred -------HHhC-CCCCeEEEEeCCccc----------CcC-CEEEeCCCCHHHHHHHHHhCCEEEEECCCchhHHHHhcC
Confidence 2223 378999999999853 244 79999999999999999999998886211 246
Q ss_pred cHHHHHHHHcCCceEEcCCcccccceecCcceEEecccccccccCCccCHHHHHHHHHHHHHhcCHHHHHHHHHHHH--H
Q 007247 490 GLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGM--A 567 (611)
Q Consensus 490 gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~--~ 567 (611)
|.+++||||||+|||+++.+++.++|+++++|+.+ .+.++++++|..+. ++.+.+|++++. .
T Consensus 254 P~Kl~eymA~G~PVI~~~~~~~~~~v~~~~~G~~~------------~~~~e~~~~i~~l~----~~~~~~m~~na~~~a 317 (339)
T 3rhz_A 254 SYKLGSFLAAGIPVIVQEGIANQELIENNGLGWIV------------KDVEEAIMKVKNVN----EDEYIELVKNVRSFN 317 (339)
T ss_dssp CHHHHHHHHHTCCEEEETTCTTTHHHHHHTCEEEE------------SSHHHHHHHHHHCC----HHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHcCCCEEEccChhHHHHHHhCCeEEEe------------CCHHHHHHHHHHhC----HHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999976 36889998888763 456788888874 3
Q ss_pred hhCCchHHHHHH
Q 007247 568 QDLSWKGPAKKW 579 (611)
Q Consensus 568 ~~fsw~~~a~~~ 579 (611)
+.++|....++.
T Consensus 318 ~~~~~~~f~k~~ 329 (339)
T 3rhz_A 318 PILRKGFFTRRL 329 (339)
T ss_dssp HHHHTTHHHHHH
T ss_pred HHhhccHHHHHH
Confidence 556666665544
No 33
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=99.80 E-value=9e-18 Score=179.65 Aligned_cols=226 Identities=12% Similarity=0.063 Sum_probs=160.7
Q ss_pred hHHHhh-hccEEEecCHHHHHHHHcCcCCCcccchhhhccceeEeeCC-cccCCcCCCCccccccccCcchhhhccHHHH
Q 007247 310 MKAGIL-ESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNG-MDVQEWNPLTDKYIGVKYDASTVMDAKPLLK 387 (611)
Q Consensus 310 ~k~~~~-~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~Ng-vd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 387 (611)
.+..+. .+|.+++.|+..++.+.+ .|++.+ ++.++.|. +|...+.+.... +
T Consensus 162 ~r~~~~~~a~~~~~~se~~~~~l~~---~Gi~~~------~i~vvGn~~~D~~~~~~~~~~------------------~ 214 (403)
T 3ot5_A 162 NRQLTGVMADIHFSPTKQAKENLLA---EGKDPA------TIFVTGNTAIDALKTTVQKDY------------------H 214 (403)
T ss_dssp HHHHHHHHCSEEEESSHHHHHHHHH---TTCCGG------GEEECCCHHHHHHHHHSCTTC------------------C
T ss_pred HHHHHHHhcCEEECCCHHHHHHHHH---cCCCcc------cEEEeCCchHHHHHhhhhhhc------------------c
Confidence 344343 589999999999999986 677655 88888884 554333221100 0
Q ss_pred HHHHHHhCCCCCCCCcEEEEEcCccc-ccCHHHHHHHHHhccc--CCcEEEEEeCCCchhHHHHHHHHHHCCCceEEecc
Q 007247 388 EALQAEVGLPVDRNIPVIGFIGRLEE-QKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAK 464 (611)
Q Consensus 388 ~~~~~~~gl~~~~~~~~il~iGrl~~-~Kg~d~li~a~~~l~~--~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~ 464 (611)
...++++ + ++..++++.||.+. .|+++.+++|+.++.+ +++++++.+...+...+.++++.... .++.....
T Consensus 215 ~~~~~~l--~--~~~~vlv~~~r~~~~~~~l~~ll~a~~~l~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~-~~v~l~~~ 289 (403)
T 3ot5_A 215 HPILENL--G--DNRLILMTAHRRENLGEPMQGMFEAVREIVESREDTELVYPMHLNPAVREKAMAILGGH-ERIHLIEP 289 (403)
T ss_dssp CHHHHSC--T--TCEEEEECCCCHHHHTTHHHHHHHHHHHHHHHCTTEEEEEECCSCHHHHHHHHHHHTTC-TTEEEECC
T ss_pred hHHHHhc--c--CCCEEEEEeCcccccCcHHHHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHhCCC-CCEEEeCC
Confidence 1223333 2 23345667788754 3778999999999875 78999887432233556666543222 45777777
Q ss_pred cChHHHHHHHHHccEEEeCCCCCCCcHHHHHHHHcCCceEEc-CCcccccceecCcceEEecccccccccCCccCHHHHH
Q 007247 465 FNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVA-STGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVS 543 (611)
Q Consensus 465 ~~~~~~~~i~~~aDv~l~pS~~E~~gl~~lEAma~G~PvI~s-~~gg~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~~la 543 (611)
.....+..+|+.||+++.+| |.+.+|||++|+|+|+. +.++..|.++.| +|+++ .+ |+++++
T Consensus 290 l~~~~~~~l~~~ad~vv~~S-----Gg~~~EA~a~g~PvV~~~~~~~~~e~v~~g-~~~lv----------~~-d~~~l~ 352 (403)
T 3ot5_A 290 LDAIDFHNFLRKSYLVFTDS-----GGVQEEAPGMGVPVLVLRDTTERPEGIEAG-TLKLI----------GT-NKENLI 352 (403)
T ss_dssp CCHHHHHHHHHHEEEEEECC-----HHHHHHGGGTTCCEEECCSSCSCHHHHHHT-SEEEC----------CS-CHHHHH
T ss_pred CCHHHHHHHHHhcCEEEECC-----ccHHHHHHHhCCCEEEecCCCcchhheeCC-cEEEc----------CC-CHHHHH
Confidence 77667778999999999888 55569999999999999 678888888665 88875 44 999999
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHH
Q 007247 544 TTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEV 588 (611)
Q Consensus 544 ~~i~~ll~~~~~~~~~~~~~~~~~~~fsw~~~a~~~~~~~~~l~~ 588 (611)
+++.+++++ ++.+.+|+++ ...|.....+++..+++.+.+.
T Consensus 353 ~ai~~ll~~--~~~~~~m~~~--~~~~g~~~aa~rI~~~l~~~l~ 393 (403)
T 3ot5_A 353 KEALDLLDN--KESHDKMAQA--ANPYGDGFAANRILAAIKSHFE 393 (403)
T ss_dssp HHHHHHHHC--HHHHHHHHHS--CCTTCCSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHcC--HHHHHHHHhh--cCcccCCcHHHHHHHHHHHHhC
Confidence 999999997 7777777654 3457777788888888887765
No 34
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=99.79 E-value=5.2e-18 Score=181.12 Aligned_cols=229 Identities=14% Similarity=0.076 Sum_probs=158.2
Q ss_pred hHHH-hhhccEEEecCHHHHHHHHcCcCCCcccchhhhccceeEeeCC-cccCCcCCCCccccccccCcchhhhccHHHH
Q 007247 310 MKAG-ILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNG-MDVQEWNPLTDKYIGVKYDASTVMDAKPLLK 387 (611)
Q Consensus 310 ~k~~-~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~Ng-vd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 387 (611)
.+.. -..+|.+++.|+..++.+.+ .|++.+ ++.++.|. +|...+.+.. ...+...+
T Consensus 159 ~r~~~~~~a~~~~~~se~~~~~l~~---~G~~~~------ki~vvGn~~~d~~~~~~~~-------------~~~~~~~~ 216 (396)
T 3dzc_A 159 NRKLTAALTQYHFAPTDTSRANLLQ---ENYNAE------NIFVTGNTVIDALLAVREK-------------IHTDMDLQ 216 (396)
T ss_dssp HHHHHHHTCSEEEESSHHHHHHHHH---TTCCGG------GEEECCCHHHHHHHHHHHH-------------HHHCHHHH
T ss_pred HHHHHHHhcCEEECCCHHHHHHHHH---cCCCcC------cEEEECCcHHHHHHHhhhh-------------cccchhhH
Confidence 3443 35789999999999999886 677655 78888885 3432111100 00000113
Q ss_pred HHHHHHhC-CCCCCCCcEEEEEcCccc-ccCHHHHHHHHHhccc--CCcEEEEE-eCCCchhHHHHHHHHHHCCCceEEe
Q 007247 388 EALQAEVG-LPVDRNIPVIGFIGRLEE-QKGSDILAAAIPHFIK--ENVQIIVL-GTGKKPMEKQLEQLEILYPEKARGV 462 (611)
Q Consensus 388 ~~~~~~~g-l~~~~~~~~il~iGrl~~-~Kg~d~li~a~~~l~~--~~~~lviv-G~g~~~~~~~l~~l~~~~~~~v~~~ 462 (611)
.++++++| ++.+ +..++++.+|.+. .|+++.+++|++++.+ +++++++. |.+ +...+.++++... ..++...
T Consensus 217 ~~~r~~lg~l~~~-~~~vlv~~hR~~~~~~~~~~ll~A~~~l~~~~~~~~~v~~~g~~-~~~~~~l~~~~~~-~~~v~~~ 293 (396)
T 3dzc_A 217 ATLESQFPMLDAS-KKLILVTGHRRESFGGGFERICQALITTAEQHPECQILYPVHLN-PNVREPVNKLLKG-VSNIVLI 293 (396)
T ss_dssp HHHHHTCTTCCTT-SEEEEEECSCBCCCTTHHHHHHHHHHHHHHHCTTEEEEEECCBC-HHHHHHHHHHTTT-CTTEEEE
T ss_pred HHHHHHhCccCCC-CCEEEEEECCcccchhHHHHHHHHHHHHHHhCCCceEEEEeCCC-hHHHHHHHHHHcC-CCCEEEe
Confidence 66778888 4432 2334455656543 4789999999999875 68999886 544 3355566654322 2457776
Q ss_pred cccChHHHHHHHHHccEEEeCCCCCCCcHHHHHHHHcCCceEEc-CCcccccceecCcceEEecccccccccCCccCHHH
Q 007247 463 AKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVA-STGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAA 541 (611)
Q Consensus 463 ~~~~~~~~~~i~~~aDv~l~pS~~E~~gl~~lEAma~G~PvI~s-~~gg~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~~ 541 (611)
..........+|+.||+++.+| + | +++|||++|+|+|++ +.++..|++++| +++++ . .|+++
T Consensus 294 ~~lg~~~~~~l~~~ad~vv~~S---G-g-~~~EA~a~G~PvV~~~~~~~~~e~v~~G-~~~lv----------~-~d~~~ 356 (396)
T 3dzc_A 294 EPQQYLPFVYLMDRAHIILTDS---G-G-IQEEAPSLGKPVLVMRETTERPEAVAAG-TVKLV----------G-TNQQQ 356 (396)
T ss_dssp CCCCHHHHHHHHHHCSEEEESC---S-G-GGTTGGGGTCCEEECCSSCSCHHHHHHT-SEEEC----------T-TCHHH
T ss_pred CCCCHHHHHHHHHhcCEEEECC---c-c-HHHHHHHcCCCEEEccCCCcchHHHHcC-ceEEc----------C-CCHHH
Confidence 6666555668999999999998 3 4 449999999999999 678888888777 56764 3 48999
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhhCCchHHHHHHHHHHH
Q 007247 542 VSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLL 584 (611)
Q Consensus 542 la~~i~~ll~~~~~~~~~~~~~~~~~~~fsw~~~a~~~~~~~~ 584 (611)
++++|.+++++ ++.+.+|++++ ..|.....++++.++++
T Consensus 357 l~~ai~~ll~d--~~~~~~m~~~~--~~~~~~~aa~ri~~~l~ 395 (396)
T 3dzc_A 357 ICDALSLLLTD--PQAYQAMSQAH--NPYGDGKACQRIADILA 395 (396)
T ss_dssp HHHHHHHHHHC--HHHHHHHHTSC--CTTCCSCHHHHHHHHHH
T ss_pred HHHHHHHHHcC--HHHHHHHhhcc--CCCcCChHHHHHHHHHh
Confidence 99999999998 77777777653 45777777777776654
No 35
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=99.78 E-value=2.6e-18 Score=183.61 Aligned_cols=160 Identities=15% Similarity=0.057 Sum_probs=120.5
Q ss_pred CCcEEEEEcCcccccCHHHHHHHHHhcccCCcEEEEEeCCCchhHHHHHHHHHHCCCceEEecccChHHHHHHHHHccEE
Q 007247 401 NIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFI 480 (611)
Q Consensus 401 ~~~~il~iGrl~~~Kg~d~li~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~i~~~aDv~ 480 (611)
+..++++.|++. .++.+.+.++++.+.+.++++++++.+.. ..+.++ ..++++.+.+..+ ...+++.||++
T Consensus 242 ~~~vlv~~G~~~-~~~~~~~~~~~~~l~~~~~~~~~~~g~~~-~~~~l~----~~~~~v~~~~~~~---~~~~l~~ad~~ 312 (412)
T 3otg_A 242 RPLVYLTLGTSS-GGTVEVLRAAIDGLAGLDADVLVASGPSL-DVSGLG----EVPANVRLESWVP---QAALLPHVDLV 312 (412)
T ss_dssp SCEEEEECTTTT-CSCHHHHHHHHHHHHTSSSEEEEECCSSC-CCTTCC----CCCTTEEEESCCC---HHHHGGGCSEE
T ss_pred CCEEEEEcCCCC-cCcHHHHHHHHHHHHcCCCEEEEEECCCC-Chhhhc----cCCCcEEEeCCCC---HHHHHhcCcEE
Confidence 345678889986 78888888888887666788887776542 111121 2345677766552 55799999999
Q ss_pred EeCCCCCCCcHHHHHHHHcCCceEEcCCc----ccccceecCcceEEecccccccccCCcc--CHHHHHHHHHHHHHhcC
Q 007247 481 LIPSRFEPCGLIQLHAMRYGTVPIVASTG----GLVDTVEEGFTGFQMGSFSVDCEAVDPV--DVAAVSTTVRRALATYG 554 (611)
Q Consensus 481 l~pS~~E~~gl~~lEAma~G~PvI~s~~g----g~~e~v~~g~~G~l~~~~~~~~~~v~~~--d~~~la~~i~~ll~~~~ 554 (611)
|.++ .+.+++|||++|+|+|+...+ +..+.+.+.++|+++ +++ |+++++++|.+++++
T Consensus 313 v~~~----g~~t~~Ea~a~G~P~v~~p~~~~q~~~~~~v~~~g~g~~~----------~~~~~~~~~l~~ai~~ll~~-- 376 (412)
T 3otg_A 313 VHHG----GSGTTLGALGAGVPQLSFPWAGDSFANAQAVAQAGAGDHL----------LPDNISPDSVSGAAKRLLAE-- 376 (412)
T ss_dssp EESC----CHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHHTSEEEC----------CGGGCCHHHHHHHHHHHHHC--
T ss_pred EECC----chHHHHHHHHhCCCEEecCCchhHHHHHHHHHHcCCEEec----------CcccCCHHHHHHHHHHHHhC--
Confidence 9765 348999999999999996654 467888888899986 666 899999999999998
Q ss_pred HHHHHHHHHHH--HHhhCCchHHHHHHHHHHHH
Q 007247 555 TQALAEMMKNG--MAQDLSWKGPAKKWEETLLN 585 (611)
Q Consensus 555 ~~~~~~~~~~~--~~~~fsw~~~a~~~~~~~~~ 585 (611)
++.+.+|++.+ +.+.++|+.+++.+++++.+
T Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 409 (412)
T 3otg_A 377 ESYRAGARAVAAEIAAMPGPDEVVRLLPGFASR 409 (412)
T ss_dssp HHHHHHHHHHHHHHHHSCCHHHHHTTHHHHHC-
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 66666666554 45778999999999988753
No 36
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=99.69 E-value=9.3e-15 Score=154.17 Aligned_cols=163 Identities=13% Similarity=0.091 Sum_probs=107.4
Q ss_pred cEEEEEcCcccccCHHHHHHHHHhccc-CCcEEEEEeCCCchhHHHHHHHHHHCCCceEEecccChHHHHHHHHHccEEE
Q 007247 403 PVIGFIGRLEEQKGSDILAAAIPHFIK-ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFIL 481 (611)
Q Consensus 403 ~~il~iGrl~~~Kg~d~li~a~~~l~~-~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~i~~~aDv~l 481 (611)
.++++.|++...+..+.+.+++..+.. .+++++++. |...++. +.+.....+.++.... |..+ +..+|+.||++|
T Consensus 182 ~ilv~gGs~g~~~~~~~~~~al~~l~~~~~~~vi~~~-G~~~~~~-~~~~~~~~~~~~~v~~-f~~d-m~~~l~~aDlvI 257 (365)
T 3s2u_A 182 NLLVLGGSLGAEPLNKLLPEALAQVPLEIRPAIRHQA-GRQHAEI-TAERYRTVAVEADVAP-FISD-MAAAYAWADLVI 257 (365)
T ss_dssp EEEECCTTTTCSHHHHHHHHHHHTSCTTTCCEEEEEC-CTTTHHH-HHHHHHHTTCCCEEES-CCSC-HHHHHHHCSEEE
T ss_pred EEEEECCcCCccccchhhHHHHHhcccccceEEEEec-Ccccccc-ccceeccccccccccc-chhh-hhhhhccceEEE
Confidence 345566788888888999999999865 456655433 3332433 3334445554555443 3333 557999999999
Q ss_pred eCCCCCCCcHHHHHHHHcCCceEEcCCccc--------ccceecCcceEEecccccccccCCcc--CHHHHHHHHHHHHH
Q 007247 482 IPSRFEPCGLIQLHAMRYGTVPIVASTGGL--------VDTVEEGFTGFQMGSFSVDCEAVDPV--DVAAVSTTVRRALA 551 (611)
Q Consensus 482 ~pS~~E~~gl~~lEAma~G~PvI~s~~gg~--------~e~v~~g~~G~l~~~~~~~~~~v~~~--d~~~la~~i~~ll~ 551 (611)
.-+ -++++.|+|++|+|+|....... .+.+.+.+.|+++ +.. ++++|+++|.++++
T Consensus 258 ~ra----G~~Tv~E~~a~G~P~Ilip~p~~~~~~Q~~NA~~l~~~G~a~~l----------~~~~~~~~~L~~~i~~ll~ 323 (365)
T 3s2u_A 258 CRA----GALTVSELTAAGLPAFLVPLPHAIDDHQTRNAEFLVRSGAGRLL----------PQKSTGAAELAAQLSEVLM 323 (365)
T ss_dssp ECC----CHHHHHHHHHHTCCEEECC-----CCHHHHHHHHHHTTTSEEEC----------CTTTCCHHHHHHHHHHHHH
T ss_pred ecC----CcchHHHHHHhCCCeEEeccCCCCCcHHHHHHHHHHHCCCEEEe----------ecCCCCHHHHHHHHHHHHC
Confidence 543 36899999999999998765432 2345566678875 433 68999999999999
Q ss_pred hcCHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHH
Q 007247 552 TYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLE 587 (611)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~fsw~~~a~~~~~~~~~l~ 587 (611)
| ++.+.+|++++.. +.....+++..+.++++.
T Consensus 324 d--~~~~~~m~~~a~~--~~~~~aa~~ia~~i~~la 355 (365)
T 3s2u_A 324 H--PETLRSMADQARS--LAKPEATRTVVDACLEVA 355 (365)
T ss_dssp C--THHHHHHHHHHHH--TCCTTHHHHHHHHHHHHC
T ss_pred C--HHHHHHHHHHHHh--cCCccHHHHHHHHHHHHH
Confidence 8 7888899888643 333334555555555443
No 37
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus}
Probab=99.65 E-value=6.7e-15 Score=158.27 Aligned_cols=161 Identities=12% Similarity=0.058 Sum_probs=111.5
Q ss_pred CCcEEEEEcCcccccCHHHHHHHHHhccc-CCcEE-EEEeCCCchhHHHHHHHHHHCCCceEEecccChHHHHHHHHHcc
Q 007247 401 NIPVIGFIGRLEEQKGSDILAAAIPHFIK-ENVQI-IVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGAD 478 (611)
Q Consensus 401 ~~~~il~iGrl~~~Kg~d~li~a~~~l~~-~~~~l-vivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~i~~~aD 478 (611)
+.+++++.|++. .++.+.+.++++.+.+ +++++ +++|.+.. .+.++ ..++++...+..+.. .+|+.||
T Consensus 232 ~~~v~v~~Gs~~-~~~~~~~~~~~~~l~~~~~~~~~~~~G~~~~--~~~l~----~~~~~v~~~~~~~~~---~~l~~ad 301 (430)
T 2iyf_A 232 EKVVLVSLGSAF-TKQPAFYRECVRAFGNLPGWHLVLQIGRKVT--PAELG----ELPDNVEVHDWVPQL---AILRQAD 301 (430)
T ss_dssp SEEEEEECTTTC-C-CHHHHHHHHHHHTTCTTEEEEEECC---C--GGGGC----SCCTTEEEESSCCHH---HHHTTCS
T ss_pred CCeEEEEcCCCC-CCcHHHHHHHHHHHhcCCCeEEEEEeCCCCC--hHHhc----cCCCCeEEEecCCHH---HHhhccC
Confidence 346788999998 5666665555555544 57888 46787652 11121 245668776655543 5899999
Q ss_pred EEEeCCCCCCCcHHHHHHHHcCCceEEcCCcc----cccceecCcceEEecccccccccCCcc--CHHHHHHHHHHHHHh
Q 007247 479 FILIPSRFEPCGLIQLHAMRYGTVPIVASTGG----LVDTVEEGFTGFQMGSFSVDCEAVDPV--DVAAVSTTVRRALAT 552 (611)
Q Consensus 479 v~l~pS~~E~~gl~~lEAma~G~PvI~s~~gg----~~e~v~~g~~G~l~~~~~~~~~~v~~~--d~~~la~~i~~ll~~ 552 (611)
+++..+- +++++|||++|+|+|+...++ ..+.+.+.+.|+.+ +++ |+++++++|.+++++
T Consensus 302 ~~v~~~G----~~t~~Ea~~~G~P~i~~p~~~~q~~~a~~~~~~g~g~~~----------~~~~~~~~~l~~~i~~ll~~ 367 (430)
T 2iyf_A 302 LFVTHAG----AGGSQEGLATATPMIAVPQAVDQFGNADMLQGLGVARKL----------ATEEATADLLRETALALVDD 367 (430)
T ss_dssp EEEECCC----HHHHHHHHHTTCCEEECCCSHHHHHHHHHHHHTTSEEEC----------CCC-CCHHHHHHHHHHHHHC
T ss_pred EEEECCC----ccHHHHHHHhCCCEEECCCccchHHHHHHHHHcCCEEEc----------CCCCCCHHHHHHHHHHHHcC
Confidence 9987542 379999999999999998765 45667777889976 555 889999999999987
Q ss_pred cCHHHHHHHHHHH--HHhhCCchHHHHHHHHHHHHHH
Q 007247 553 YGTQALAEMMKNG--MAQDLSWKGPAKKWEETLLNLE 587 (611)
Q Consensus 553 ~~~~~~~~~~~~~--~~~~fsw~~~a~~~~~~~~~l~ 587 (611)
++.+.++++.+ +.+.++++.+++.+++++.+..
T Consensus 368 --~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 402 (430)
T 2iyf_A 368 --PEVARRLRRIQAEMAQEGGTRRAADLIEAELPARH 402 (430)
T ss_dssp --HHHHHHHHHHHHHHHHHCHHHHHHHHHHTTSCC--
T ss_pred --HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhhccc
Confidence 55555555443 3456788988888888776543
No 38
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=99.64 E-value=1.6e-15 Score=161.49 Aligned_cols=153 Identities=13% Similarity=0.110 Sum_probs=99.8
Q ss_pred CCcEEEEEcCccccc----------CHHHHHHHHHhcccCCcEEEEEeCCCchhHHHHHHHHHHCCCceEEecccChHHH
Q 007247 401 NIPVIGFIGRLEEQK----------GSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLA 470 (611)
Q Consensus 401 ~~~~il~iGrl~~~K----------g~d~li~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~ 470 (611)
..+++++.|++...| .++.+++++.++ ++++++++++.. .+.++ ..++++......+ .
T Consensus 227 ~~~v~v~~G~~~~~~~~~~~~~~~~~~~~~~~al~~~---~~~~v~~~~~~~--~~~l~----~~~~~v~~~~~~~---~ 294 (398)
T 4fzr_A 227 QPRLCLTFGTRVPLPNTNTIPGGLSLLQALSQELPKL---GFEVVVAVSDKL--AQTLQ----PLPEGVLAAGQFP---L 294 (398)
T ss_dssp SCEEECC----------------CCSHHHHHHHGGGG---TCEEEECCCC--------------CCTTEEEESCCC---H
T ss_pred CCEEEEEccCcccccccccccchHHHHHHHHHHHHhC---CCEEEEEeCCcc--hhhhc----cCCCcEEEeCcCC---H
Confidence 345778889996544 466666666665 789999887652 22222 3466787776653 4
Q ss_pred HHHHHHccEEEeCCCCCCCcHHHHHHHHcCCceEEc----CCcccccceecCcceEEecccccccccCCcc--CHHHHHH
Q 007247 471 HMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVA----STGGLVDTVEEGFTGFQMGSFSVDCEAVDPV--DVAAVST 544 (611)
Q Consensus 471 ~~i~~~aDv~l~pS~~E~~gl~~lEAma~G~PvI~s----~~gg~~e~v~~g~~G~l~~~~~~~~~~v~~~--d~~~la~ 544 (611)
..+++.||++|. ++-+.+++|||++|+|+|+. +..+..+.+.+.++|+++ ++. |++++++
T Consensus 295 ~~ll~~ad~~v~----~gG~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~~~~~g~g~~~----------~~~~~~~~~l~~ 360 (398)
T 4fzr_A 295 SAIMPACDVVVH----HGGHGTTLTCLSEGVPQVSVPVIAEVWDSARLLHAAGAGVEV----------PWEQAGVESVLA 360 (398)
T ss_dssp HHHGGGCSEEEE----CCCHHHHHHHHHTTCCEEECCCSGGGHHHHHHHHHTTSEEEC----------C-------CHHH
T ss_pred HHHHhhCCEEEe----cCCHHHHHHHHHhCCCEEecCCchhHHHHHHHHHHcCCEEec----------CcccCCHHHHHH
Confidence 468999999995 44478999999999999994 445677888888999986 655 7899999
Q ss_pred HHHHHHHhcCHHHHHHHHHHH--HHhhCCchHHHHHHHH
Q 007247 545 TVRRALATYGTQALAEMMKNG--MAQDLSWKGPAKKWEE 581 (611)
Q Consensus 545 ~i~~ll~~~~~~~~~~~~~~~--~~~~fsw~~~a~~~~~ 581 (611)
+|.+++++ +..+.+|.+.+ +.+..+|+.+++.+++
T Consensus 361 ai~~ll~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 397 (398)
T 4fzr_A 361 ACARIRDD--SSYVGNARRLAAEMATLPTPADIVRLIEQ 397 (398)
T ss_dssp HHHHHHHC--THHHHHHHHHHHHHTTSCCHHHHHHHHTC
T ss_pred HHHHHHhC--HHHHHHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 99999998 55555555544 4577888888877653
No 39
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=99.56 E-value=2.6e-14 Score=151.51 Aligned_cols=158 Identities=14% Similarity=0.134 Sum_probs=109.3
Q ss_pred CcEEEEEcCcccccCH-HHHHHHHHhccc-CCcEEEEEeCCCchhHHHHHHHHHHCCCceEEecccChHHHHHHHHHccE
Q 007247 402 IPVIGFIGRLEEQKGS-DILAAAIPHFIK-ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADF 479 (611)
Q Consensus 402 ~~~il~iGrl~~~Kg~-d~li~a~~~l~~-~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~i~~~aDv 479 (611)
..++++.|++...|+. ..+++++.+..+ ++++++++|++.. .+.++ ..+.++......+.. .+++.||+
T Consensus 219 ~~vlv~~G~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~~~~~--~~~l~----~~~~~v~~~~~~~~~---~ll~~ad~ 289 (391)
T 3tsa_A 219 RRVCICMGRMVLNATGPAPLLRAVAAATELPGVEAVIAVPPEH--RALLT----DLPDNARIAESVPLN---LFLRTCEL 289 (391)
T ss_dssp EEEEEECCHHHHHHHCSHHHHHHHHHHHTSTTEEEEEECCGGG--GGGCT----TCCTTEEECCSCCGG---GTGGGCSE
T ss_pred CEEEEEcCCCCCcccchHHHHHHHHHhccCCCeEEEEEECCcc--hhhcc----cCCCCEEEeccCCHH---HHHhhCCE
Confidence 3566777998765443 555555544422 5899999987652 11121 345567766554433 46799999
Q ss_pred EEeCCCCCCCcHHHHHHHHcCCceEEc----CCcccccceecCcceEEecccccccccCCc----cCHHHHHHHHHHHHH
Q 007247 480 ILIPSRFEPCGLIQLHAMRYGTVPIVA----STGGLVDTVEEGFTGFQMGSFSVDCEAVDP----VDVAAVSTTVRRALA 551 (611)
Q Consensus 480 ~l~pS~~E~~gl~~lEAma~G~PvI~s----~~gg~~e~v~~g~~G~l~~~~~~~~~~v~~----~d~~~la~~i~~ll~ 551 (611)
+|.. +-+.+++|||++|+|+|+. +..+..+.+.+.+.|+++ ++ .|+++++++|.++++
T Consensus 290 ~v~~----~G~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~~~~~g~g~~~----------~~~~~~~~~~~l~~ai~~ll~ 355 (391)
T 3tsa_A 290 VICA----GGSGTAFTATRLGIPQLVLPQYFDQFDYARNLAAAGAGICL----------PDEQAQSDHEQFTDSIATVLG 355 (391)
T ss_dssp EEEC----CCHHHHHHHHHTTCCEEECCCSTTHHHHHHHHHHTTSEEEC----------CSHHHHTCHHHHHHHHHHHHT
T ss_pred EEeC----CCHHHHHHHHHhCCCEEecCCcccHHHHHHHHHHcCCEEec----------CcccccCCHHHHHHHHHHHHc
Confidence 9953 4457999999999999994 445567778888899986 66 689999999999999
Q ss_pred hcCHHHHHHHHHHH--HHhhCCchHHHHHHHHHHH
Q 007247 552 TYGTQALAEMMKNG--MAQDLSWKGPAKKWEETLL 584 (611)
Q Consensus 552 ~~~~~~~~~~~~~~--~~~~fsw~~~a~~~~~~~~ 584 (611)
+ +..+.+|.+.+ +....+++.+++.+++++.
T Consensus 356 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 388 (391)
T 3tsa_A 356 D--TGFAAAAIKLSDEITAMPHPAALVRTLENTAA 388 (391)
T ss_dssp C--THHHHHHHHHHHHHHTSCCHHHHHHHHHHC--
T ss_pred C--HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 8 55555554433 4577888888887776543
No 40
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=99.53 E-value=2.6e-13 Score=144.37 Aligned_cols=154 Identities=13% Similarity=0.083 Sum_probs=109.4
Q ss_pred CCcEEEEEcCcccc-cCHHHHHHHHHhcccCCcEEEEEeCCCchhHHHHHHHHHHCCCceEEecccChHHHHHHHHHccE
Q 007247 401 NIPVIGFIGRLEEQ-KGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADF 479 (611)
Q Consensus 401 ~~~~il~iGrl~~~-Kg~d~li~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~i~~~aDv 479 (611)
+.+++++.|++... ++.+.+.++++.+.+.++++++++++.. .+.++ ..+.++......+ ...+++.||+
T Consensus 232 ~~~v~v~~G~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~g~~~--~~~l~----~~~~~v~~~~~~~---~~~ll~~ad~ 302 (398)
T 3oti_A 232 RPEVAITMGTIELQAFGIGAVEPIIAAAGEVDADFVLALGDLD--ISPLG----TLPRNVRAVGWTP---LHTLLRTCTA 302 (398)
T ss_dssp SCEEEECCTTTHHHHHCGGGHHHHHHHHHTSSSEEEEECTTSC--CGGGC----SCCTTEEEESSCC---HHHHHTTCSE
T ss_pred CCEEEEEcCCCccccCcHHHHHHHHHHHHcCCCEEEEEECCcC--hhhhc----cCCCcEEEEccCC---HHHHHhhCCE
Confidence 34577888999665 4655555555555445899999988753 11111 3456787776653 3468999999
Q ss_pred EEeCCCCCCCcHHHHHHHHcCCceEE----cCCcccc--cceecCcceEEecccccccccCCcc--CHHHHHHHHHHHHH
Q 007247 480 ILIPSRFEPCGLIQLHAMRYGTVPIV----ASTGGLV--DTVEEGFTGFQMGSFSVDCEAVDPV--DVAAVSTTVRRALA 551 (611)
Q Consensus 480 ~l~pS~~E~~gl~~lEAma~G~PvI~----s~~gg~~--e~v~~g~~G~l~~~~~~~~~~v~~~--d~~~la~~i~~ll~ 551 (611)
+|.. +-+.+++|||++|+|+|+ .+..+.. +.+.+.+.|+.+ ++. +.++++ ++++
T Consensus 303 ~v~~----~G~~t~~Eal~~G~P~v~~p~~~dq~~~a~~~~~~~~g~g~~~----------~~~~~~~~~l~----~ll~ 364 (398)
T 3oti_A 303 VVHH----GGGGTVMTAIDAGIPQLLAPDPRDQFQHTAREAVSRRGIGLVS----------TSDKVDADLLR----RLIG 364 (398)
T ss_dssp EEEC----CCHHHHHHHHHHTCCEEECCCTTCCSSCTTHHHHHHHTSEEEC----------CGGGCCHHHHH----HHHH
T ss_pred EEEC----CCHHHHHHHHHhCCCEEEcCCCchhHHHHHHHHHHHCCCEEee----------CCCCCCHHHHH----HHHc
Confidence 9953 445799999999999999 5667788 889888999986 555 566666 7788
Q ss_pred hcCHHHHHHHHHHH--HHhhCCchHHHHHHHHHH
Q 007247 552 TYGTQALAEMMKNG--MAQDLSWKGPAKKWEETL 583 (611)
Q Consensus 552 ~~~~~~~~~~~~~~--~~~~fsw~~~a~~~~~~~ 583 (611)
+ +..+.+|.+.+ +....+|+.+++.+++++
T Consensus 365 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 396 (398)
T 3oti_A 365 D--ESLRTAAREVREEMVALPTPAETVRRIVERI 396 (398)
T ss_dssp C--HHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred C--HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 7 55555555444 467889999998887765
No 41
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=99.53 E-value=1.5e-12 Score=138.10 Aligned_cols=157 Identities=15% Similarity=0.066 Sum_probs=106.9
Q ss_pred CCcEEEEEcCccccc--CHHHHHHHHHhcccCCcEEEE-EeCCCchhHHHHHHHHHHCCCceEEecccChHHHHHHHHHc
Q 007247 401 NIPVIGFIGRLEEQK--GSDILAAAIPHFIKENVQIIV-LGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGA 477 (611)
Q Consensus 401 ~~~~il~iGrl~~~K--g~d~li~a~~~l~~~~~~lvi-vG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~i~~~a 477 (611)
...++++.|+....+ .+..+++++.. .++++++ +|++.. .+.++ ..+.++......+.. .+++.|
T Consensus 231 ~~~v~v~~G~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~~~~--~~~~~----~~~~~v~~~~~~~~~---~ll~~a 298 (402)
T 3ia7_A 231 APVLLVSLGNQFNEHPEFFRACAQAFAD---TPWHVVMAIGGFLD--PAVLG----PLPPNVEAHQWIPFH---SVLAHA 298 (402)
T ss_dssp CCEEEEECCSCSSCCHHHHHHHHHHHTT---SSCEEEEECCTTSC--GGGGC----SCCTTEEEESCCCHH---HHHTTE
T ss_pred CCEEEEECCCCCcchHHHHHHHHHHHhc---CCcEEEEEeCCcCC--hhhhC----CCCCcEEEecCCCHH---HHHhhC
Confidence 345678889987655 34444444443 3577666 555431 11111 245667766655543 699999
Q ss_pred cEEEeCCCCCCCcHHHHHHHHcCCceEEcCC-----cccccceecCcceEEecccccccccCCcc--CHHHHHHHHHHHH
Q 007247 478 DFILIPSRFEPCGLIQLHAMRYGTVPIVAST-----GGLVDTVEEGFTGFQMGSFSVDCEAVDPV--DVAAVSTTVRRAL 550 (611)
Q Consensus 478 Dv~l~pS~~E~~gl~~lEAma~G~PvI~s~~-----gg~~e~v~~g~~G~l~~~~~~~~~~v~~~--d~~~la~~i~~ll 550 (611)
|++|..+- ..+++|||++|+|+|+... .+..+.+.+.+.|..+ ..+ ++++++++|.+++
T Consensus 299 d~~v~~~G----~~t~~Ea~~~G~P~v~~p~~~~~q~~~a~~~~~~g~g~~~----------~~~~~~~~~l~~~~~~ll 364 (402)
T 3ia7_A 299 RACLTHGT----TGAVLEAFAAGVPLVLVPHFATEAAPSAERVIELGLGSVL----------RPDQLEPASIREAVERLA 364 (402)
T ss_dssp EEEEECCC----HHHHHHHHHTTCCEEECGGGCGGGHHHHHHHHHTTSEEEC----------CGGGCSHHHHHHHHHHHH
T ss_pred CEEEECCC----HHHHHHHHHhCCCEEEeCCCcccHHHHHHHHHHcCCEEEc----------cCCCCCHHHHHHHHHHHH
Confidence 99997653 3788999999999995543 4667777888899876 555 8999999999999
Q ss_pred HhcCHHHHHHHHHHH--HHhhCCchHHHHHHHHHHHH
Q 007247 551 ATYGTQALAEMMKNG--MAQDLSWKGPAKKWEETLLN 585 (611)
Q Consensus 551 ~~~~~~~~~~~~~~~--~~~~fsw~~~a~~~~~~~~~ 585 (611)
++ +..+.++.+.+ +.+..+++..++.+++++.+
T Consensus 365 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 399 (402)
T 3ia7_A 365 AD--SAVRERVRRMQRDILSSGGPARAADEVEAYLGR 399 (402)
T ss_dssp HC--HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred cC--HHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhh
Confidence 98 55444444333 45667888888888887754
No 42
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=99.48 E-value=2.7e-12 Score=137.07 Aligned_cols=157 Identities=14% Similarity=0.042 Sum_probs=105.1
Q ss_pred CCcEEEEEcCcccccC--HHHHHHHHHhcccCCcEEEE-EeCCCchhHHHHHHHHHHCCCceEEecccChHHHHHHHHHc
Q 007247 401 NIPVIGFIGRLEEQKG--SDILAAAIPHFIKENVQIIV-LGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGA 477 (611)
Q Consensus 401 ~~~~il~iGrl~~~Kg--~d~li~a~~~l~~~~~~lvi-vG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~i~~~a 477 (611)
...++++.|+...... +..+++++.++ ++++++ +|.+.. .+.++ ..+.++......+.. .+++.|
T Consensus 247 ~~~v~v~~Gs~~~~~~~~~~~~~~al~~~---~~~~v~~~g~~~~--~~~l~----~~~~~v~~~~~~~~~---~ll~~a 314 (415)
T 3rsc_A 247 LPVVLVSLGTTFNDRPGFFRDCARAFDGQ---PWHVVMTLGGQVD--PAALG----DLPPNVEAHRWVPHV---KVLEQA 314 (415)
T ss_dssp CCEEEEECTTTSCCCHHHHHHHHHHHTTS---SCEEEEECTTTSC--GGGGC----CCCTTEEEESCCCHH---HHHHHE
T ss_pred CCEEEEECCCCCCChHHHHHHHHHHHhcC---CcEEEEEeCCCCC--hHHhc----CCCCcEEEEecCCHH---HHHhhC
Confidence 3456778898864432 44444444443 588877 565431 11111 245667776555543 689999
Q ss_pred cEEEeCCCCCCCcHHHHHHHHcCCceEEc----CCcccccceecCcceEEecccccccccCCcc--CHHHHHHHHHHHHH
Q 007247 478 DFILIPSRFEPCGLIQLHAMRYGTVPIVA----STGGLVDTVEEGFTGFQMGSFSVDCEAVDPV--DVAAVSTTVRRALA 551 (611)
Q Consensus 478 Dv~l~pS~~E~~gl~~lEAma~G~PvI~s----~~gg~~e~v~~g~~G~l~~~~~~~~~~v~~~--d~~~la~~i~~ll~ 551 (611)
|++|..+- ..+++|||++|+|+|+. +.....+.+.+.+.|..+ ..+ ++++++++|.++++
T Consensus 315 d~~v~~~G----~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~l~~~g~g~~~----------~~~~~~~~~l~~~i~~ll~ 380 (415)
T 3rsc_A 315 TVCVTHGG----MGTLMEALYWGRPLVVVPQSFDVQPMARRVDQLGLGAVL----------PGEKADGDTLLAAVGAVAA 380 (415)
T ss_dssp EEEEESCC----HHHHHHHHHTTCCEEECCCSGGGHHHHHHHHHHTCEEEC----------CGGGCCHHHHHHHHHHHHT
T ss_pred CEEEECCc----HHHHHHHHHhCCCEEEeCCcchHHHHHHHHHHcCCEEEc----------ccCCCCHHHHHHHHHHHHc
Confidence 99997642 36889999999999995 444466777777888875 554 89999999999999
Q ss_pred hcCHHHHHHHHHHH--HHhhCCchHHHHHHHHHHHH
Q 007247 552 TYGTQALAEMMKNG--MAQDLSWKGPAKKWEETLLN 585 (611)
Q Consensus 552 ~~~~~~~~~~~~~~--~~~~fsw~~~a~~~~~~~~~ 585 (611)
+ +..+.++.+.+ +....+++..++.+++++..
T Consensus 381 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 414 (415)
T 3rsc_A 381 D--PALLARVEAMRGHVRRAGGAARAADAVEAYLAR 414 (415)
T ss_dssp C--HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred C--HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc
Confidence 8 55555444333 45667888888887777653
No 43
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii}
Probab=99.46 E-value=3.9e-13 Score=142.60 Aligned_cols=190 Identities=19% Similarity=0.140 Sum_probs=132.2
Q ss_pred hhccEEEecCHHHHHHHHcCcCCCcccchhhhccceeEeeCC-cccCCcCCCCccccccccCcchhhhccHHHHHHHHHH
Q 007247 315 LESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNG-MDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAE 393 (611)
Q Consensus 315 ~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~Ng-vd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (611)
..+|.+++.++..++.+.+ .|++.+ ++.++.|. +|...+. .....+.+++++
T Consensus 145 ~~a~~~~~~te~~~~~l~~---~G~~~~------~I~vtGnp~~D~~~~~------------------~~~~~~~~~~~~ 197 (385)
T 4hwg_A 145 HISDVNITLTEHARRYLIA---EGLPAE------LTFKSGSHMPEVLDRF------------------MPKILKSDILDK 197 (385)
T ss_dssp HHCSEEEESSHHHHHHHHH---TTCCGG------GEEECCCSHHHHHHHH------------------HHHHHHCCHHHH
T ss_pred hhhceeecCCHHHHHHHHH---cCCCcC------cEEEECCchHHHHHHh------------------hhhcchhHHHHH
Confidence 4689999999999999886 677655 78888874 3421110 011234467888
Q ss_pred hCCCCCCCCcEEEEEcCcc---cccCHHHHHHHHHhcccC-CcEEEEEeCCCchhHHHHHHH-H-HHCCCceEEecccCh
Q 007247 394 VGLPVDRNIPVIGFIGRLE---EQKGSDILAAAIPHFIKE-NVQIIVLGTGKKPMEKQLEQL-E-ILYPEKARGVAKFNI 467 (611)
Q Consensus 394 ~gl~~~~~~~~il~iGrl~---~~Kg~d~li~a~~~l~~~-~~~lvivG~g~~~~~~~l~~l-~-~~~~~~v~~~~~~~~ 467 (611)
+|++. +..+++..+|.+ ..|+++.+++|+.++.+. ++++++... +...+.++++ . .....++.....+..
T Consensus 198 lgl~~--~~~iLvt~hr~e~~~~~~~l~~ll~al~~l~~~~~~~vv~p~~--p~~~~~l~~~~~~~~~~~~v~l~~~lg~ 273 (385)
T 4hwg_A 198 LSLTP--KQYFLISSHREENVDVKNNLKELLNSLQMLIKEYNFLIIFSTH--PRTKKRLEDLEGFKELGDKIRFLPAFSF 273 (385)
T ss_dssp TTCCT--TSEEEEEECCC-----CHHHHHHHHHHHHHHHHHCCEEEEEEC--HHHHHHHHTSGGGGGTGGGEEECCCCCH
T ss_pred cCCCc--CCEEEEEeCCchhcCcHHHHHHHHHHHHHHHhcCCeEEEEECC--hHHHHHHHHHHHHhcCCCCEEEEcCCCH
Confidence 99864 335666677764 347899999999998653 687777543 3355555554 2 111235766656666
Q ss_pred HHHHHHHHHccEEEeCCCCCCCcHHHHHHHHcCCceEEcCCc-ccccceecCcceEEecccccccccCCccCHHHHHHHH
Q 007247 468 PLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTG-GLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTV 546 (611)
Q Consensus 468 ~~~~~i~~~aDv~l~pS~~E~~gl~~lEAma~G~PvI~s~~g-g~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~~la~~i 546 (611)
.....+++.||+++.+| |.++.||+++|+|+|+.... +..|.++.| +++++ . .|.+++++++
T Consensus 274 ~~~~~l~~~adlvvt~S-----Ggv~~EA~alG~Pvv~~~~~ter~e~v~~G-~~~lv----------~-~d~~~i~~ai 336 (385)
T 4hwg_A 274 TDYVKLQMNAFCILSDS-----GTITEEASILNLPALNIREAHERPEGMDAG-TLIMS----------G-FKAERVLQAV 336 (385)
T ss_dssp HHHHHHHHHCSEEEECC-----TTHHHHHHHTTCCEEECSSSCSCTHHHHHT-CCEEC----------C-SSHHHHHHHH
T ss_pred HHHHHHHHhCcEEEECC-----ccHHHHHHHcCCCEEEcCCCccchhhhhcC-ceEEc----------C-CCHHHHHHHH
Confidence 56678999999999777 55789999999999998654 357777665 66654 3 4899999999
Q ss_pred HHHHHh
Q 007247 547 RRALAT 552 (611)
Q Consensus 547 ~~ll~~ 552 (611)
.+++++
T Consensus 337 ~~ll~d 342 (385)
T 4hwg_A 337 KTITEE 342 (385)
T ss_dssp HHHHTT
T ss_pred HHHHhC
Confidence 999987
No 44
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae}
Probab=99.45 E-value=8.7e-12 Score=131.75 Aligned_cols=153 Identities=13% Similarity=0.109 Sum_probs=104.8
Q ss_pred CcEEEEEcCcccc-------cCHHHHHHHHHhcccCCcEEEEEeCCCchhHHHHHHHHHHCCCceEEecccChHHHHHHH
Q 007247 402 IPVIGFIGRLEEQ-------KGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMII 474 (611)
Q Consensus 402 ~~~il~iGrl~~~-------Kg~d~li~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~i~ 474 (611)
..++++.|++... +.++.+++++.++ ++++++++++. ..+.++. .++++.. ...+. .+++
T Consensus 211 ~~v~v~~Gs~~~~~~~~~~~~~~~~~~~al~~~---~~~~~~~~g~~--~~~~l~~----~~~~v~~-~~~~~---~~~l 277 (384)
T 2p6p_A 211 QRVLVTSGSRVAKESYDRNFDFLRGLAKDLVRW---DVELIVAAPDT--VAEALRA----EVPQARV-GWTPL---DVVA 277 (384)
T ss_dssp CEEEEECSSSSSCCSSCCCCTTHHHHHHHHHTT---TCEEEEECCHH--HHHHHHH----HCTTSEE-ECCCH---HHHG
T ss_pred CEEEEECCCCCccccccccHHHHHHHHHHHhcC---CcEEEEEeCCC--CHHhhCC----CCCceEE-cCCCH---HHHH
Confidence 4578889999865 6778888888765 78888876542 2222322 3456766 44432 3588
Q ss_pred HHccEEEeCCCCCCCcHHHHHHHHcCCceEEcCCcc----cccceecCcceEEecccccccccCCcc--CHHHHHHHHHH
Q 007247 475 AGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGG----LVDTVEEGFTGFQMGSFSVDCEAVDPV--DVAAVSTTVRR 548 (611)
Q Consensus 475 ~~aDv~l~pS~~E~~gl~~lEAma~G~PvI~s~~gg----~~e~v~~g~~G~l~~~~~~~~~~v~~~--d~~~la~~i~~ 548 (611)
+.||++|..+ -+++++|||++|+|+|+...++ ..+.+.+.+.|+.+ ++. +.++++++|.+
T Consensus 278 ~~~d~~v~~~----G~~t~~Ea~~~G~P~v~~p~~~dq~~~a~~~~~~g~g~~~----------~~~~~~~~~l~~~i~~ 343 (384)
T 2p6p_A 278 PTCDLLVHHA----GGVSTLTGLSAGVPQLLIPKGSVLEAPARRVADYGAAIAL----------LPGEDSTEAIADSCQE 343 (384)
T ss_dssp GGCSEEEECS----CTTHHHHHHHTTCCEEECCCSHHHHHHHHHHHHHTSEEEC----------CTTCCCHHHHHHHHHH
T ss_pred hhCCEEEeCC----cHHHHHHHHHhCCCEEEccCcccchHHHHHHHHCCCeEec----------CcCCCCHHHHHHHHHH
Confidence 9999999763 3468999999999999998754 66667777789876 543 78999999999
Q ss_pred HHHhcCHHHHHHHHHHH--HHhhCCchHHHHHHHHHH
Q 007247 549 ALATYGTQALAEMMKNG--MAQDLSWKGPAKKWEETL 583 (611)
Q Consensus 549 ll~~~~~~~~~~~~~~~--~~~~fsw~~~a~~~~~~~ 583 (611)
++++ +..+.++.+.+ +...-.-+.+++.+++++
T Consensus 344 ll~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 378 (384)
T 2p6p_A 344 LQAK--DTYARRAQDLSREISGMPLPATVVTALEQLA 378 (384)
T ss_dssp HHHC--HHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHcC--HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 9997 55555554433 233344555555444443
No 45
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=99.24 E-value=3e-10 Score=122.52 Aligned_cols=154 Identities=16% Similarity=0.093 Sum_probs=106.2
Q ss_pred CcEEEEEcCccc-----ccCHHHHHHHHHhcccCCcEEEEEeCCCchhHHHHHHHHHHCCCceEEecccChHHHHHHHHH
Q 007247 402 IPVIGFIGRLEE-----QKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAG 476 (611)
Q Consensus 402 ~~~il~iGrl~~-----~Kg~d~li~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~i~~~ 476 (611)
..++++.|++.. .|.+..+++++..+ ++++++++.+.. . +.++ ..++++......+. ..++..
T Consensus 268 ~~v~v~~Gs~~~~~~~~~~~~~~~~~al~~~---~~~~v~~~g~~~-~-~~l~----~~~~~v~~~~~~~~---~~ll~~ 335 (441)
T 2yjn_A 268 RRVCLTLGISSRENSIGQVSIEELLGAVGDV---DAEIIATFDAQQ-L-EGVA----NIPDNVRTVGFVPM---HALLPT 335 (441)
T ss_dssp CEEEEEC----------CCSTTTTHHHHHTS---SSEEEECCCTTT-T-SSCS----SCCSSEEECCSCCH---HHHGGG
T ss_pred CEEEEECCCCcccccChHHHHHHHHHHHHcC---CCEEEEEECCcc-h-hhhc----cCCCCEEEecCCCH---HHHHhh
Confidence 347788899875 48888999999876 688888776542 1 1111 24566776655553 357899
Q ss_pred ccEEEeCCCCCCCcHHHHHHHHcCCceEEcCCcc----cccceecCcceEEecccccccccCCcc--CHHHHHHHHHHHH
Q 007247 477 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGG----LVDTVEEGFTGFQMGSFSVDCEAVDPV--DVAAVSTTVRRAL 550 (611)
Q Consensus 477 aDv~l~pS~~E~~gl~~lEAma~G~PvI~s~~gg----~~e~v~~g~~G~l~~~~~~~~~~v~~~--d~~~la~~i~~ll 550 (611)
||++|.. +-+.+++|||++|+|+|+....+ ..+.+.+.+.|+.+ +.. ++++++++|.+++
T Consensus 336 ad~~V~~----~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~----------~~~~~~~~~l~~~i~~ll 401 (441)
T 2yjn_A 336 CAATVHH----GGPGSWHTAAIHGVPQVILPDGWDTGVRAQRTQEFGAGIAL----------PVPELTPDQLRESVKRVL 401 (441)
T ss_dssp CSEEEEC----CCHHHHHHHHHTTCCEEECCCSHHHHHHHHHHHHHTSEEEC----------CTTTCCHHHHHHHHHHHH
T ss_pred CCEEEEC----CCHHHHHHHHHhCCCEEEeCCcccHHHHHHHHHHcCCEEEc----------ccccCCHHHHHHHHHHHh
Confidence 9999963 33579999999999999998743 56667777889876 544 8899999999999
Q ss_pred HhcCHHHHHHHHHHH--HHhhCCchHHHHHHHHHH
Q 007247 551 ATYGTQALAEMMKNG--MAQDLSWKGPAKKWEETL 583 (611)
Q Consensus 551 ~~~~~~~~~~~~~~~--~~~~fsw~~~a~~~~~~~ 583 (611)
++ +..+.++.+.+ +.....++.+++.+++++
T Consensus 402 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 434 (441)
T 2yjn_A 402 DD--PAHRAGAARMRDDMLAEPSPAEVVGICEELA 434 (441)
T ss_dssp HC--HHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred cC--HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 97 55555554433 356677777777776654
No 46
>1ygp_A Yeast glycogen phosphorylase; phosphorylated form, glycosyltransferase; HET: PLP; 2.80A {Saccharomyces cerevisiae} SCOP: c.87.1.4
Probab=99.13 E-value=1.1e-08 Score=114.27 Aligned_cols=294 Identities=17% Similarity=0.183 Sum_probs=188.7
Q ss_pred CCeEEEecCCccchHHHH-HHHhccCCCCC-------CCceEEEEEecCcccc--ccCcccccccCC-------------
Q 007247 228 EDVVFVANDWHTSLIPCY-LKTMYKPKGMY-------KSAKVVFCIHNIAYQG--RFAFEDFGLLNL------------- 284 (611)
Q Consensus 228 ~Dvivh~hd~~~~~~~~~-l~~~~~~~~~~-------~~~k~v~~iH~~~~~~--~~~~~~~~~~~~------------- 284 (611)
+. +||.||-|.+++..- ++.+...+|+- ....++||.|...+.+ +++.+.+..+-.
T Consensus 360 ~~-~ihlNDtHpalai~ELmR~L~d~~gl~wd~Aw~iv~~t~~yTnHT~lpealE~wpv~l~~~lLpr~~~II~ein~~f 438 (879)
T 1ygp_A 360 QV-AIQLNDTHPTLAIVELQRVLVDLEKLDWHEAWDIVTKTFAYTNHTVMQEALEKWPRRLFGHLLPRHLEIIYDINWFF 438 (879)
T ss_dssp HE-EEEEESSTTTHHHHHHHHHHHHTTCCCHHHHHHHHHHHEEEEECCCSGGGSCEEEHHHHHHHCHHHHHHHHHHHHHH
T ss_pred ce-EEEccCCcHHHHHHHHHHHHhhhcCCCHHHHHHHHHHheeeecCcCchHhhccCCHHHHHHHCCcHHHHHHHHHHHH
Confidence 45 999999888664444 43332222220 2357899999886644 344443322100
Q ss_pred --------Cc--ccccccccccCCCCCCCCcchhHhHHHhhhccEEEecCHHHHHHHHcCcCCCcccchhhhccceeEee
Q 007247 285 --------PA--QFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIV 354 (611)
Q Consensus 285 --------~~--~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ 354 (611)
+. .....+..++.-. ..+.+++-..++..+..|-.||.-..+.+++. .--+..++.+..++.-+.
T Consensus 439 ~~~~~~~~~~d~~~~~~l~ii~~~~---~~~~v~MA~LAi~~S~~vNGVs~LH~ev~k~~--~f~df~~l~P~~kf~n~T 513 (879)
T 1ygp_A 439 LEDVAKKFPKDVDLLSRISIIEENS---PERQIRMAFLAIVGSHKVNGVVELHSELIKTT--IFKDFIKFYGPSKFVNVT 513 (879)
T ss_dssp HHHHHHHSTTCTHHHHHHCSEECCS---SSCEEEHHHHHHHHEEEEEESSHHHHHHHHHT--TTHHHHHHHCGGGEEECC
T ss_pred HHHHHHHcCCCHHHHHhcceeccCC---CcceeehHHHHHHhcCceeEehHHHHHHHHHH--HhHHHHHhCCCCcccCcC
Confidence 00 0000111111100 00245666678889999999999998887542 111122233333888999
Q ss_pred CCcccCCcCCCCccc--------cc---cc-------------c-Cc----chhhhccHHHHH----HHHHHh-CCCCC-
Q 007247 355 NGMDVQEWNPLTDKY--------IG---VK-------------Y-DA----STVMDAKPLLKE----ALQAEV-GLPVD- 399 (611)
Q Consensus 355 Ngvd~~~~~p~~~~~--------~~---~~-------------~-~~----~~~~~~~~~~~~----~~~~~~-gl~~~- 399 (611)
|||....|-....+. +. .. | +. ..+.+.|..+|. .+++.. |+..+
T Consensus 514 NGVt~rrWl~~~Np~L~~Li~~~iG~~~~~W~~d~~~L~~l~~~~~D~~f~~~l~~iK~~nK~~La~~i~~~~~g~~ld~ 593 (879)
T 1ygp_A 514 NGITPRRWLKQANPSLAKLISETLNDPTEEYLLDMAKLTQLEKYVEDKEFLKKWNQVKLNNKIRLVDLIKKENDGVDIIN 593 (879)
T ss_dssp CCBCHHHHTTTTCHHHHHHHHHHTTCTTCGGGTCGGGGGGGGGGGGCTHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCSC
T ss_pred CCcCCchhhhhcCHHHHHHHHHhcCCChhhhhhCHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCcEecC
Confidence 999887774211111 11 00 1 11 112233333333 355667 88888
Q ss_pred ----CCCcEEEEEcCcccccCHHH-HHHHHHhccc------------------CCcEEEEEeCCCc------hhHHHHHH
Q 007247 400 ----RNIPVIGFIGRLEEQKGSDI-LAAAIPHFIK------------------ENVQIIVLGTGKK------PMEKQLEQ 450 (611)
Q Consensus 400 ----~~~~~il~iGrl~~~Kg~d~-li~a~~~l~~------------------~~~~lvivG~g~~------~~~~~l~~ 450 (611)
++...++++-|+.++|...+ ++..+.++.+ .++++++.|...+ .+.+.+-.
T Consensus 594 ~~~~p~sLfdvq~KR~heYKRq~LniL~ii~ry~~Ik~~~~~~~~p~~~~~~~~P~~~IFaGKAaP~y~~aK~iIklI~~ 673 (879)
T 1ygp_A 594 REYLDDTLFDMQVKRIHEYKRQQLNVFGIIYRYLAMKNMLKNGASIEEVARKYPRKVSIFGGKSAPGYYMAKLIIKLINC 673 (879)
T ss_dssp STTGGGCEEEEEESCCCGGGTHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHSCCEEEEEECCCCTTCHHHHHHHHHHHH
T ss_pred CCCCCCeeeeeeeehhhHhHHHHHHHHHHHHHHHHHHhCccccCCCcccccCCCCeEEEEeccCCCCcHHHHHHHHHHHH
Confidence 78899999999999999999 6766554421 3688999998653 33444444
Q ss_pred HHH------HCCC--ceEEecccChHHHHHHHHHccEEEeCCCC--CCCcHHHHHHHHcCCceEEcCCcccccceec--C
Q 007247 451 LEI------LYPE--KARGVAKFNIPLAHMIIAGADFILIPSRF--EPCGLIQLHAMRYGTVPIVASTGGLVDTVEE--G 518 (611)
Q Consensus 451 l~~------~~~~--~v~~~~~~~~~~~~~i~~~aDv~l~pS~~--E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~--g 518 (611)
++. ...+ +|.++..++..++..++.+||+....|+. |.+|..=+-+|..|.+.|++-.|..+|+.++ +
T Consensus 674 va~~iN~Dp~v~~~LKVVFlenY~VslAe~iipaaDvseqistag~EASGTsnMKfalNGaLtlgtlDGanvEi~e~vG~ 753 (879)
T 1ygp_A 674 VADIVNNDESIEHLLKVVFVADYNVSKAEIIIPASDLSEHISTAGTEASGTSNMKFVMNGGLIIGTVDGANVEITREIGE 753 (879)
T ss_dssp HHHHHTTCGGGTTSEEEEEETTCCHHHHHHHGGGCSEEEECCCTTCCSCCHHHHHHHTTTCEEEEESCTHHHHHHHHHCG
T ss_pred HHHHhccChhhCCceEEEEeCCCCHHHHHHhhhhhhhhhhCCCCCccccCchhhHHHHcCCeeeecccchhHHHHHHcCc
Confidence 443 1233 68899999999999999999999999875 9999999999999999999999999999876 5
Q ss_pred cceEEeccc
Q 007247 519 FTGFQMGSF 527 (611)
Q Consensus 519 ~~G~l~~~~ 527 (611)
+|+|+||..
T Consensus 754 eN~fiFG~~ 762 (879)
T 1ygp_A 754 DNVFLFGNL 762 (879)
T ss_dssp GGSEEESCC
T ss_pred ccEEEccCC
Confidence 699999953
No 47
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus}
Probab=99.10 E-value=1.4e-08 Score=108.50 Aligned_cols=157 Identities=9% Similarity=-0.017 Sum_probs=99.1
Q ss_pred CCcEEEEEcCcccccCHHHHHHHHHhcccCCcEEE-EEeCCCchhHHHHHHHHHHCCCceEEecccChHHHHHHHHHccE
Q 007247 401 NIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQII-VLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADF 479 (611)
Q Consensus 401 ~~~~il~iGrl~~~Kg~d~li~a~~~l~~~~~~lv-ivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~i~~~aDv 479 (611)
+..++++.|+.. .+..+.+.++++.+.+.+++++ ++|.+.. . +.+ ...++++......+.. .+++.||+
T Consensus 255 ~~~v~v~~Gs~~-~~~~~~~~~~~~al~~~~~~~~~~~g~~~~-~-~~~----~~~~~~v~~~~~~~~~---~~l~~~d~ 324 (424)
T 2iya_A 255 RPVLLIALGSAF-TDHLDFYRTCLSAVDGLDWHVVLSVGRFVD-P-ADL----GEVPPNVEVHQWVPQL---DILTKASA 324 (424)
T ss_dssp CCEEEEECCSSS-CCCHHHHHHHHHHHTTCSSEEEEECCTTSC-G-GGG----CSCCTTEEEESSCCHH---HHHTTCSE
T ss_pred CCEEEEEcCCCC-cchHHHHHHHHHHHhcCCcEEEEEECCcCC-h-HHh----ccCCCCeEEecCCCHH---HHHhhCCE
Confidence 345677889887 4444444444454544577874 4676542 1 111 1245667766554443 58999999
Q ss_pred EEeCCCCCCCcHHHHHHHHcCCceEEcCCcc----cccceecCcceEEecccccccccCCcc--CHHHHHHHHHHHHHhc
Q 007247 480 ILIPSRFEPCGLIQLHAMRYGTVPIVASTGG----LVDTVEEGFTGFQMGSFSVDCEAVDPV--DVAAVSTTVRRALATY 553 (611)
Q Consensus 480 ~l~pS~~E~~gl~~lEAma~G~PvI~s~~gg----~~e~v~~g~~G~l~~~~~~~~~~v~~~--d~~~la~~i~~ll~~~ 553 (611)
+|..+ -.++++|||++|+|+|+....+ ..+.+.+.+.|+.+ +.. +.++++++|.+++++
T Consensus 325 ~v~~~----G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~----------~~~~~~~~~l~~~i~~ll~~- 389 (424)
T 2iya_A 325 FITHA----GMGSTMEALSNAVPMVAVPQIAEQTMNAERIVELGLGRHI----------PRDQVTAEKLREAVLAVASD- 389 (424)
T ss_dssp EEECC----CHHHHHHHHHTTCCEEECCCSHHHHHHHHHHHHTTSEEEC----------CGGGCCHHHHHHHHHHHHHC-
T ss_pred EEECC----chhHHHHHHHcCCCEEEecCccchHHHHHHHHHCCCEEEc----------CcCCCCHHHHHHHHHHHHcC-
Confidence 88632 2379999999999999997643 34556667788875 544 889999999999987
Q ss_pred CHHHHHHHHHHH--HHhhCCchHHHHHHHHHH
Q 007247 554 GTQALAEMMKNG--MAQDLSWKGPAKKWEETL 583 (611)
Q Consensus 554 ~~~~~~~~~~~~--~~~~fsw~~~a~~~~~~~ 583 (611)
++.+.++.+.+ +......+..++.+++++
T Consensus 390 -~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 420 (424)
T 2iya_A 390 -PGVAERLAAVRQEIREAGGARAAADILEGIL 420 (424)
T ss_dssp -HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 54444443322 233444555555555544
No 48
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=99.00 E-value=1.6e-08 Score=106.85 Aligned_cols=153 Identities=16% Similarity=0.122 Sum_probs=90.6
Q ss_pred CcEEEEEcCccccc-CHHHHHHHHHhcccCCcEEEEEeCCCchhHHHHHHHHHHCCCceEEecccChHHHHHHHHHccEE
Q 007247 402 IPVIGFIGRLEEQK-GSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFI 480 (611)
Q Consensus 402 ~~~il~iGrl~~~K-g~d~li~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~i~~~aDv~ 480 (611)
.+++++.|++...+ +.+.+.+++..+.+.+.++++.+.+... ......++++......+. ..++..||++
T Consensus 238 ~~v~vs~Gs~~~~~~~~~~~~~~~~~l~~~~~~~v~~~~~~~~------~~~~~~~~~v~~~~~~p~---~~lL~~~~~~ 308 (400)
T 4amg_A 238 RRIAVTLGSIDALSGGIAKLAPLFSEVADVDAEFVLTLGGGDL------ALLGELPANVRVVEWIPL---GALLETCDAI 308 (400)
T ss_dssp CEEEECCCSCC--CCSSSTTHHHHHHGGGSSSEEEEECCTTCC------CCCCCCCTTEEEECCCCH---HHHHTTCSEE
T ss_pred cEEEEeCCcccccCccHHHHHHHHHHhhccCceEEEEecCccc------cccccCCCCEEEEeecCH---HHHhhhhhhe
Confidence 35666788876544 3455556666666667888777655421 011234566765555443 2578999998
Q ss_pred EeCCCCCCCcHHHHHHHHcCCceEEcCCcc----cccceecCcceEEecccccccccCCccCHHHHHHHHHHHHHhcCHH
Q 007247 481 LIPSRFEPCGLIQLHAMRYGTVPIVASTGG----LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQ 556 (611)
Q Consensus 481 l~pS~~E~~gl~~lEAma~G~PvI~s~~gg----~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~~la~~i~~ll~~~~~~ 556 (611)
|.- +-..+++|||++|+|+|+....+ ..+.+.+.+.|+.+ +. .+..+++|.++|+| +.
T Consensus 309 v~h----~G~~s~~Eal~~GvP~v~~P~~~dQ~~na~~v~~~G~g~~l----------~~--~~~~~~al~~lL~d--~~ 370 (400)
T 4amg_A 309 IHH----GGSGTLLTALAAGVPQCVIPHGSYQDTNRDVLTGLGIGFDA----------EA--GSLGAEQCRRLLDD--AG 370 (400)
T ss_dssp EEC----CCHHHHHHHHHHTCCEEECCC---CHHHHHHHHHHTSEEEC----------CT--TTCSHHHHHHHHHC--HH
T ss_pred ecc----CCccHHHHHHHhCCCEEEecCcccHHHHHHHHHHCCCEEEc----------CC--CCchHHHHHHHHcC--HH
Confidence 842 34578999999999999965443 44556666678764 33 34467899999997 43
Q ss_pred HHHHHH--HHHHHhhCCchHHHHHHHH
Q 007247 557 ALAEMM--KNGMAQDLSWKGPAKKWEE 581 (611)
Q Consensus 557 ~~~~~~--~~~~~~~fsw~~~a~~~~~ 581 (611)
.+..+. ++.++..=+....++.+++
T Consensus 371 ~r~~a~~l~~~~~~~~~~~~~a~~le~ 397 (400)
T 4amg_A 371 LREAALRVRQEMSEMPPPAETAAXLVA 397 (400)
T ss_dssp HHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 222211 1123333355555555544
No 49
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A*
Probab=98.91 E-value=8.4e-08 Score=102.09 Aligned_cols=158 Identities=13% Similarity=0.054 Sum_probs=100.4
Q ss_pred CCcEEEEEcCcc-cccCHHHHHHHHHhcccCCcEEEEEeCCCchhHHHHHHHHHHCCCceEEecccChHHHHHHHHHccE
Q 007247 401 NIPVIGFIGRLE-EQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADF 479 (611)
Q Consensus 401 ~~~~il~iGrl~-~~Kg~d~li~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~i~~~aDv 479 (611)
..+++++.|++. ..+..+.+++++.++ ++++++.++... .. . ...+.++......+. ..++..||+
T Consensus 221 ~~~Vlv~~Gs~~~~~~~~~~~~~al~~~---~~~vv~~~g~~~-~~----~--~~~~~~v~~~~~~~~---~~ll~~~d~ 287 (404)
T 3h4t_A 221 SPPVYVGFGSGPAPAEAARVAIEAVRAQ---GRRVVLSSGWAG-LG----R--IDEGDDCLVVGEVNH---QVLFGRVAA 287 (404)
T ss_dssp SCCEEECCTTSCCCTTHHHHHHHHHHHT---TCCEEEECTTTT-CC----C--SSCCTTEEEESSCCH---HHHGGGSSE
T ss_pred CCeEEEECCCCCCcHHHHHHHHHHHHhC---CCEEEEEeCCcc-cc----c--ccCCCCEEEecCCCH---HHHHhhCcE
Confidence 346778889988 667778888888776 677777654331 10 0 123556776655443 357899999
Q ss_pred EEeCCCCCCCcHHHHHHHHcCCceEEcCCccc----ccceecCcceEEecccccccccCCccCHHHHHHHHHHHHHhcCH
Q 007247 480 ILIPSRFEPCGLIQLHAMRYGTVPIVASTGGL----VDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGT 555 (611)
Q Consensus 480 ~l~pS~~E~~gl~~lEAma~G~PvI~s~~gg~----~e~v~~g~~G~l~~~~~~~~~~v~~~d~~~la~~i~~ll~~~~~ 555 (611)
+|..+- ..++.||+++|+|+|+....+- .+.+.+.+.|..+. ....+.++++++|.++++ +
T Consensus 288 ~v~~gG----~~t~~Eal~~GvP~v~~p~~~dQ~~na~~~~~~G~g~~l~--------~~~~~~~~l~~ai~~ll~---~ 352 (404)
T 3h4t_A 288 VVHHGG----AGTTTAVTRAGAPQVVVPQKADQPYYAGRVADLGVGVAHD--------GPTPTVESLSAALATALT---P 352 (404)
T ss_dssp EEECCC----HHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHHTSEEECS--------SSSCCHHHHHHHHHHHTS---H
T ss_pred EEECCc----HHHHHHHHHcCCCEEEcCCcccHHHHHHHHHHCCCEeccC--------cCCCCHHHHHHHHHHHhC---H
Confidence 995442 3789999999999999865442 33455666788650 122378999999999986 3
Q ss_pred HHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHc
Q 007247 556 QALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVA 589 (611)
Q Consensus 556 ~~~~~~~~~~~~~~fsw~~~a~~~~~~~~~l~~~ 589 (611)
..+..+.+. .+.+.- .-+++..+.+++++..
T Consensus 353 ~~~~~~~~~--~~~~~~-~~~~~~~~~i~~~~~~ 383 (404)
T 3h4t_A 353 GIRARAAAV--AGTIRT-DGTTVAAKLLLEAISR 383 (404)
T ss_dssp HHHHHHHHH--HTTCCC-CHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHH--HHHHhh-hHHHHHHHHHHHHHhh
Confidence 333333322 233433 4455555555555543
No 50
>3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A {Actinobacillus pleuropneumoniae serovaorganism_taxid} PDB: 3q3h_A* 3q3i_A
Probab=98.88 E-value=1.3e-08 Score=111.84 Aligned_cols=176 Identities=13% Similarity=0.114 Sum_probs=121.7
Q ss_pred HhCCCCCCCCcEEEEEcCcccccCHHHHHHHHHhccc--CCcEEE--EEeCCCc---hhHHHHHHHHHHCCCceEEeccc
Q 007247 393 EVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--ENVQII--VLGTGKK---PMEKQLEQLEILYPEKARGVAKF 465 (611)
Q Consensus 393 ~~gl~~~~~~~~il~iGrl~~~Kg~d~li~a~~~l~~--~~~~lv--ivG~g~~---~~~~~l~~l~~~~~~~v~~~~~~ 465 (611)
.+|++.+.+.++++..+++ .|..+.+++++.++.+ |+..+. ++|.+.. ...+.+.+.... +++.+.+..
T Consensus 432 ~~~lp~~~G~v~Fg~fn~~--~Ki~p~~l~~WarIL~~vP~s~L~l~~~g~~~g~~~~~~~~~~~~GI~--~Rv~F~g~~ 507 (631)
T 3q3e_A 432 DYLLRENPEVVNIGIASTT--MKLNPYFLEALKAIRDRAKVKVHFHFALGQSNGITHPYVERFIKSYLG--DSATAHPHS 507 (631)
T ss_dssp CCCCCSCCSEEEEEEEECS--TTCCHHHHHHHHHHHHHCSSEEEEEEEESSCCGGGHHHHHHHHHHHHG--GGEEEECCC
T ss_pred cccCCcCCCeEEEEECCcc--ccCCHHHHHHHHHHHHhCCCcEEEEEecCCCchhhHHHHHHHHHcCCC--ccEEEcCCC
Confidence 3566644346778888875 6889999999998876 666553 3674332 223333333333 468888777
Q ss_pred ChHHHHHHHHHccEEEeCCCCCCCcHHHHHHHHcCCceEEcCCccccccee------cCcceEEecccccccccCCccCH
Q 007247 466 NIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVE------EGFTGFQMGSFSVDCEAVDPVDV 539 (611)
Q Consensus 466 ~~~~~~~i~~~aDv~l~pS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~------~g~~G~l~~~~~~~~~~v~~~d~ 539 (611)
+.+.....++.+|++|-|+.+++ |++.+|||+||+|||+....++..-+. -|-.+++ -..|.
T Consensus 508 p~~e~la~y~~aDIfLDpfpy~G-gtTtlEALwmGVPVVTl~G~~~asRvgaSlL~~~GLpE~L-----------IA~d~ 575 (631)
T 3q3e_A 508 PYHQYLRILHNCDMMVNPFPFGN-TNGIIDMVTLGLVGVCKTGAEVHEHIDEGLFKRLGLPEWL-----------IANTV 575 (631)
T ss_dssp CHHHHHHHHHTCSEEECCSSSCC-SHHHHHHHHTTCCEEEECCSSHHHHHHHHHHHHTTCCGGG-----------EESSH
T ss_pred CHHHHHHHHhcCcEEEeCCcccC-ChHHHHHHHcCCCEEeccCCcHHHHhHHHHHHhcCCCcce-----------ecCCH
Confidence 77776689999999999998755 999999999999999987665554442 1222321 13679
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----hCCchHHHHHHHHHHHHHHH
Q 007247 540 AAVSTTVRRALATYGTQALAEMMKNGMAQ-----DLSWKGPAKKWEETLLNLEV 588 (611)
Q Consensus 540 ~~la~~i~~ll~~~~~~~~~~~~~~~~~~-----~fsw~~~a~~~~~~~~~l~~ 588 (611)
+++++...++..| ++.+.++.++.... -|+ ...+++++.|++++.
T Consensus 576 eeYv~~Av~La~D--~~~l~~LR~~Lr~~~~~spLFd--~~~~~~e~~ye~~~~ 625 (631)
T 3q3e_A 576 DEYVERAVRLAEN--HQERLELRRYIIENNGLNTLFT--GDPRPMGQVFLEKLN 625 (631)
T ss_dssp HHHHHHHHHHHHC--HHHHHHHHHHHHHSCCHHHHTC--SCCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC--HHHHHHHHHHHHHHhhhCCCcc--hhHHHHHHHHHHHHH
Confidence 9999999999998 77777776665432 333 556677777776654
No 51
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}
Probab=98.79 E-value=3.2e-08 Score=91.87 Aligned_cols=123 Identities=11% Similarity=0.065 Sum_probs=93.6
Q ss_pred CCcEEEEEcCcc---cccCHHHHHHHHHhcccCCcEEEEEeCCCchhHHHHHHHHHHCCCceEEecccChHHHHHHH--H
Q 007247 401 NIPVIGFIGRLE---EQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMII--A 475 (611)
Q Consensus 401 ~~~~il~iGrl~---~~Kg~d~li~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~i~--~ 475 (611)
...++++.|++. +.|.+..+++++.++ +.++++++++... ...+.++......+.. .++ +
T Consensus 21 ~~~vlv~~Gs~~~~~~~~~~~~~~~al~~~---~~~~~~~~g~~~~---------~~~~~~v~~~~~~~~~---~~l~~~ 85 (170)
T 2o6l_A 21 NGVVVFSLGSMVSNMTEERANVIASALAQI---PQKVLWRFDGNKP---------DTLGLNTRLYKWIPQN---DLLGHP 85 (170)
T ss_dssp TCEEEEECCSCCTTCCHHHHHHHHHHHTTS---SSEEEEECCSSCC---------TTCCTTEEEESSCCHH---HHHTST
T ss_pred CCEEEEECCCCcccCCHHHHHHHHHHHHhC---CCeEEEEECCcCc---------ccCCCcEEEecCCCHH---HHhcCC
Confidence 346788899985 678888888888765 5788888765421 1245568777666553 355 9
Q ss_pred HccEEEeCCCCCCCcHHHHHHHHcCCceEEcCCc----ccccceecCcceEEecccccccccCCcc--CHHHHHHHHHHH
Q 007247 476 GADFILIPSRFEPCGLIQLHAMRYGTVPIVASTG----GLVDTVEEGFTGFQMGSFSVDCEAVDPV--DVAAVSTTVRRA 549 (611)
Q Consensus 476 ~aDv~l~pS~~E~~gl~~lEAma~G~PvI~s~~g----g~~e~v~~g~~G~l~~~~~~~~~~v~~~--d~~~la~~i~~l 549 (611)
.||++|.. +-+.+++|||++|+|+|+.... +..+.+.+.+.|+.+ ++. +.++++++|.++
T Consensus 86 ~ad~~I~~----~G~~t~~Ea~~~G~P~i~~p~~~~Q~~na~~l~~~g~g~~~----------~~~~~~~~~l~~~i~~l 151 (170)
T 2o6l_A 86 KTRAFITH----GGANGIYEAIYHGIPMVGIPLFADQPDNIAHMKARGAAVRV----------DFNTMSSTDLLNALKRV 151 (170)
T ss_dssp TEEEEEEC----CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHTTTSEEEC----------CTTTCCHHHHHHHHHHH
T ss_pred CcCEEEEc----CCccHHHHHHHcCCCEEeccchhhHHHHHHHHHHcCCeEEe----------ccccCCHHHHHHHHHHH
Confidence 99999964 3468999999999999999864 346667778889976 555 889999999999
Q ss_pred HHh
Q 007247 550 LAT 552 (611)
Q Consensus 550 l~~ 552 (611)
+++
T Consensus 152 l~~ 154 (170)
T 2o6l_A 152 IND 154 (170)
T ss_dssp HHC
T ss_pred HcC
Confidence 987
No 52
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=98.72 E-value=2.4e-06 Score=90.92 Aligned_cols=155 Identities=13% Similarity=0.056 Sum_probs=101.0
Q ss_pred CcEEEEEcCcc---cccCHHHHHHHHHhcccCCcEEEEE-eCCCchhHHHHHHHHHHCCCceEEecccChHHHHHHHHHc
Q 007247 402 IPVIGFIGRLE---EQKGSDILAAAIPHFIKENVQIIVL-GTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGA 477 (611)
Q Consensus 402 ~~~il~iGrl~---~~Kg~d~li~a~~~l~~~~~~lviv-G~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~i~~~a 477 (611)
..++++.|++. ..+..+.++++++.+ +++++++ |.+... . ...++++......+. ..++..|
T Consensus 238 ~~v~v~~Gs~~~~~~~~~~~~~~~al~~~---~~~~v~~~g~~~~~----~----~~~~~~v~~~~~~~~---~~ll~~~ 303 (416)
T 1rrv_A 238 PPVHIGFGSSSGRGIADAAKVAVEAIRAQ---GRRVILSRGWTELV----L----PDDRDDCFAIDEVNF---QALFRRV 303 (416)
T ss_dssp CCEEECCTTCCSHHHHHHHHHHHHHHHHT---TCCEEEECTTTTCC----C----SCCCTTEEEESSCCH---HHHGGGS
T ss_pred CeEEEecCCCCccChHHHHHHHHHHHHHC---CCeEEEEeCCcccc----c----cCCCCCEEEeccCCh---HHHhccC
Confidence 45778889985 567778888888776 5677665 655421 1 234566766655543 3578999
Q ss_pred cEEEeCCCCCCCcHHHHHHHHcCCceEEcCCcc----cccceecCcceEEecccccccccCCccCHHHHHHHHHHHHHhc
Q 007247 478 DFILIPSRFEPCGLIQLHAMRYGTVPIVASTGG----LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY 553 (611)
Q Consensus 478 Dv~l~pS~~E~~gl~~lEAma~G~PvI~s~~gg----~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~~la~~i~~ll~~~ 553 (611)
|++|.- +-..+++||+++|+|+|+....+ ..+.+.+.+.|+.+. .+..+.++++++|.++ ++
T Consensus 304 d~~v~~----~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~--------~~~~~~~~l~~~i~~l-~~- 369 (416)
T 1rrv_A 304 AAVIHH----GSAGTEHVATRAGVPQLVIPRNTDQPYFAGRVAALGIGVAHD--------GPTPTFESLSAALTTV-LA- 369 (416)
T ss_dssp SEEEEC----CCHHHHHHHHHHTCCEEECCCSBTHHHHHHHHHHHTSEEECS--------SSCCCHHHHHHHHHHH-TS-
T ss_pred CEEEec----CChhHHHHHHHcCCCEEEccCCCCcHHHHHHHHHCCCccCCC--------CCCCCHHHHHHHHHHh-hC-
Confidence 999963 22469999999999999976543 444566677888651 1235789999999999 76
Q ss_pred CHHHHHHHHHHHHHhhCCchHHHHHHHHHH-HHHHH
Q 007247 554 GTQALAEMMKNGMAQDLSWKGPAKKWEETL-LNLEV 588 (611)
Q Consensus 554 ~~~~~~~~~~~~~~~~fsw~~~a~~~~~~~-~~l~~ 588 (611)
+..+.++.+. .+.+.-..-. +..+.+ +.+..
T Consensus 370 -~~~~~~~~~~--~~~~~~~~~~-~~~~~i~e~~~~ 401 (416)
T 1rrv_A 370 -PETRARAEAV--AGMVLTDGAA-AAADLVLAAVGR 401 (416)
T ss_dssp -HHHHHHHHHH--TTTCCCCHHH-HHHHHHHHHHHC
T ss_pred -HHHHHHHHHH--HHHHhhcCcH-HHHHHHHHHHhc
Confidence 5444444332 2333334444 555555 66554
No 53
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=98.15 E-value=1e-05 Score=86.01 Aligned_cols=155 Identities=17% Similarity=0.095 Sum_probs=106.2
Q ss_pred CcEEEEEcCc-ccccCHHHHHHHHHhcccCCcEEEEE-eCCCchhHHHHHHHHHHCCCceEEecccChHHHHHHHHHccE
Q 007247 402 IPVIGFIGRL-EEQKGSDILAAAIPHFIKENVQIIVL-GTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADF 479 (611)
Q Consensus 402 ~~~il~iGrl-~~~Kg~d~li~a~~~l~~~~~~lviv-G~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~i~~~aDv 479 (611)
..++++.|++ ...+..+.++++++++ +.+++++ |.+... . ...++++......+.. .++..||+
T Consensus 239 ~~v~v~~Gs~~~~~~~~~~~~~al~~~---~~~~v~~~g~~~~~----~----~~~~~~v~~~~~~~~~---~~l~~~d~ 304 (415)
T 1iir_A 239 PPVYLGFGSLGAPADAVRVAIDAIRAH---GRRVILSRGWADLV----L----PDDGADCFAIGEVNHQ---VLFGRVAA 304 (415)
T ss_dssp CCEEEECC---CCHHHHHHHHHHHHHT---TCCEEECTTCTTCC----C----SSCGGGEEECSSCCHH---HHGGGSSE
T ss_pred CeEEEeCCCCCCcHHHHHHHHHHHHHC---CCeEEEEeCCCccc----c----cCCCCCEEEeCcCChH---HHHhhCCE
Confidence 4678889999 5888889999999887 4566665 655421 0 2234567665555542 46899999
Q ss_pred EEeCCCCCCCcHHHHHHHHcCCceEEcCCcc----cccceecCcceEEecccccccccCCc--cCHHHHHHHHHHHHHhc
Q 007247 480 ILIPSRFEPCGLIQLHAMRYGTVPIVASTGG----LVDTVEEGFTGFQMGSFSVDCEAVDP--VDVAAVSTTVRRALATY 553 (611)
Q Consensus 480 ~l~pS~~E~~gl~~lEAma~G~PvI~s~~gg----~~e~v~~g~~G~l~~~~~~~~~~v~~--~d~~~la~~i~~ll~~~ 553 (611)
+|..+ -..+++|||++|+|+|+....+ ..+.+.+.+.|+.+ +. .+.++++++|.++ ++
T Consensus 305 ~v~~~----G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~----------~~~~~~~~~l~~~i~~l-~~- 368 (415)
T 1iir_A 305 VIHHG----GAGTTHVAARAGAPQILLPQMADQPYYAGRVAELGVGVAH----------DGPIPTFDSLSAALATA-LT- 368 (415)
T ss_dssp EEECC----CHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHHTSEEEC----------SSSSCCHHHHHHHHHHH-TS-
T ss_pred EEeCC----ChhHHHHHHHcCCCEEECCCCCccHHHHHHHHHCCCcccC----------CcCCCCHHHHHHHHHHH-cC-
Confidence 99643 2369999999999999987654 45566677788875 43 3789999999999 76
Q ss_pred CHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHc
Q 007247 554 GTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVA 589 (611)
Q Consensus 554 ~~~~~~~~~~~~~~~~fsw~~~a~~~~~~~~~l~~~ 589 (611)
+..+.++.+ ..+.+....-+++..+.+++++..
T Consensus 369 -~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~ 401 (415)
T 1iir_A 369 -PETHARATA--VAGTIRTDGAAVAARLLLDAVSRE 401 (415)
T ss_dssp -HHHHHHHHH--HHHHSCSCHHHHHHHHHHHHHHTC
T ss_pred -HHHHHHHHH--HHHHHhhcChHHHHHHHHHHHHhc
Confidence 444444333 234456677777777878777654
No 54
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=97.47 E-value=0.0036 Score=71.34 Aligned_cols=182 Identities=13% Similarity=-0.015 Sum_probs=122.6
Q ss_pred HHHhCCCCCCCCcEEEEEcCcccccCHHHHHHHHHhccc--CCcEEEEEeCCCchhHHHHHHHHHHCC---CceEEeccc
Q 007247 391 QAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILYP---EKARGVAKF 465 (611)
Q Consensus 391 ~~~~gl~~~~~~~~il~iGrl~~~Kg~d~li~a~~~l~~--~~~~lvivG~g~~~~~~~l~~l~~~~~---~~v~~~~~~ 465 (611)
|..+|||. +.+++++..++ .|=-+..++++.++.+ |+.+|++..... ..++.+++...+.+ +++.+....
T Consensus 514 R~~~gLp~--~~v~f~~fN~~--~Ki~p~~~~~W~~IL~~vP~S~L~Ll~~~~-~~~~~l~~~~~~~gi~~~r~~f~~~~ 588 (723)
T 4gyw_A 514 RSQYGLPE--DAIVYCNFNQL--YKIDPSTLQMWANILKRVPNSVLWLLRFPA-VGEPNIQQYAQNMGLPQNRIIFSPVA 588 (723)
T ss_dssp GGGGTCCT--TSEEEECCSCG--GGCCHHHHHHHHHHHHHCSSEEEEEEETTG-GGHHHHHHHHHHTTCCGGGEEEEECC
T ss_pred hhhcCCCC--CCEEEEeCCcc--ccCCHHHHHHHHHHHHhCCCCeEEEEeCcH-HHHHHHHHHHHhcCCCcCeEEECCCC
Confidence 56678885 44666666555 4555777777777766 899999887654 34556666666544 467777766
Q ss_pred ChHHHHHHHHHccEEEeCCCCCCCcHHHHHHHHcCCceEEcCCcccccceecC---cceEEecccccccccCCccCHHHH
Q 007247 466 NIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEG---FTGFQMGSFSVDCEAVDPVDVAAV 542 (611)
Q Consensus 466 ~~~~~~~i~~~aDv~l~pS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g---~~G~l~~~~~~~~~~v~~~d~~~l 542 (611)
+.+..-..+..+|++|=|.-+ +-+.+.+||+.+|+|||+-....+..-+... ..|+ -++ -..|.++.
T Consensus 589 ~~~~~l~~~~~~Di~LDt~p~-~g~tT~~eal~~GvPvvt~~g~~~~sR~~~s~l~~~gl--------~e~-ia~~~~~Y 658 (723)
T 4gyw_A 589 PKEEHVRRGQLADVCLDTPLC-NGHTTGMDVLWAGTPMVTMPGETLASRVAASQLTCLGC--------LEL-IAKNRQEY 658 (723)
T ss_dssp CHHHHHHHGGGCSEEECCSSS-CCSHHHHHHHHTTCCEEBCCCSSGGGTHHHHHHHHHTC--------GGG-BCSSHHHH
T ss_pred CHHHHHHHhCCCeEEeCCCCc-CCHHHHHHHHHcCCCEEEccCCCccHhHHHHHHHHcCC--------ccc-ccCCHHHH
Confidence 666555688999999987766 4489999999999999997643322211100 0011 011 23688999
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHH---HH--hhCCchHHHHHHHHHHHHHHHc
Q 007247 543 STTVRRALATYGTQALAEMMKNG---MA--QDLSWKGPAKKWEETLLNLEVA 589 (611)
Q Consensus 543 a~~i~~ll~~~~~~~~~~~~~~~---~~--~~fsw~~~a~~~~~~~~~l~~~ 589 (611)
.+...++..| ++.+.++.++- +. .-|+-+..++.+++.|+++...
T Consensus 659 ~~~a~~la~d--~~~l~~lr~~l~~~~~~s~l~d~~~~~~~le~a~~~~w~r 708 (723)
T 4gyw_A 659 EDIAVKLGTD--LEYLKKVRGKVWKQRISSPLFNTKQYTMELERLYLQMWEH 708 (723)
T ss_dssp HHHHHHHHHC--HHHHHHHHHHHHHHHHHSSTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcC--HHHHHHHHHHHHHHHHhCcCcCHHHHHHHHHHHHHHHHHH
Confidence 9999998888 55444443332 22 3589999999999999999864
No 55
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula}
Probab=97.23 E-value=0.026 Score=58.19 Aligned_cols=111 Identities=13% Similarity=0.124 Sum_probs=73.4
Q ss_pred HHHHHhCCCCCCCCcEEEEEcCcccccCH--HHHHHHHHhcccCCcEEEEEeCCCchhHHHHHHHHHHCCCceEEe-ccc
Q 007247 389 ALQAEVGLPVDRNIPVIGFIGRLEEQKGS--DILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGV-AKF 465 (611)
Q Consensus 389 ~~~~~~gl~~~~~~~~il~iGrl~~~Kg~--d~li~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~-~~~ 465 (611)
.+.++.|++.+ +..+++..|.-.+.|.+ +.+.+.++.|.+.+++++++|+.. -.+..+++....+.++... +..
T Consensus 174 ~~l~~~g~~~~-~~~i~i~pga~~~~k~wp~~~~~~l~~~l~~~g~~vvl~g~~~--e~~~~~~i~~~~~~~~~~l~g~~ 250 (349)
T 3tov_A 174 EFYSSHGLTDT-DILIGFNIGSAVPEKRWPAERFAHVADYFGRLGYKTVFFGGPM--DLEMVQPVVEQMETKPIVATGKF 250 (349)
T ss_dssp HHHHHTTCCTT-CCEEEEECCCSSGGGCCCHHHHHHHHHHHHHHTCEEEECCCTT--THHHHHHHHHTCSSCCEECTTCC
T ss_pred HHHHHcCCCCC-CCEEEEeCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEeCcc--hHHHHHHHHHhcccccEEeeCCC
Confidence 34456676532 22344556655556654 578888888876688999988654 3455666665554333333 345
Q ss_pred ChHHHHHHHHHccEEEeCCCCCCCcHHHHHHHHcCCceEEcC
Q 007247 466 NIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVAS 507 (611)
Q Consensus 466 ~~~~~~~i~~~aDv~l~pS~~E~~gl~~lEAma~G~PvI~s~ 507 (611)
+-.++..+++.||++|-.- .|..-+ |.++|+|+|+--
T Consensus 251 sl~e~~ali~~a~~~i~~D----sG~~Hl-Aaa~g~P~v~lf 287 (349)
T 3tov_A 251 QLGPLAAAMNRCNLLITND----SGPMHV-GISQGVPIVALY 287 (349)
T ss_dssp CHHHHHHHHHTCSEEEEES----SHHHHH-HHTTTCCEEEEC
T ss_pred CHHHHHHHHHhCCEEEECC----CCHHHH-HHhcCCCEEEEE
Confidence 5566778999999999753 366666 899999999864
No 56
>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7
Probab=96.48 E-value=0.023 Score=58.19 Aligned_cols=113 Identities=16% Similarity=0.178 Sum_probs=74.7
Q ss_pred HHHHHHHhCCCCCCCCcEEEEEcC-cccccCHH--HHHHHHHhcccCCcEEEEEeCCCchhHHHHHHHHHHCC----Cce
Q 007247 387 KEALQAEVGLPVDRNIPVIGFIGR-LEEQKGSD--ILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYP----EKA 459 (611)
Q Consensus 387 ~~~~~~~~gl~~~~~~~~il~iGr-l~~~Kg~d--~li~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~~----~~v 459 (611)
.+.+++.+|+..+ +..+++..|. ..+.|.+. .+.++++.|.+.+++++++|...+ .+..+++....+ .++
T Consensus 167 ~~~~~~~~~~~~~-~~~i~l~pga~~~~~k~wp~~~~~~l~~~L~~~~~~vvl~g~~~e--~~~~~~i~~~~~~~~~~~~ 243 (348)
T 1psw_A 167 KSYTCNQFSLSSE-RPMIGFCPGAEFGPAKRWPHYHYAELAKQLIDEGYQVVLFGSAKD--HEAGNEILAALNTEQQAWC 243 (348)
T ss_dssp HHHHHHHTTCCSS-SCEEEEECCCTTCGGGSCCHHHHHHHHHHHHHTTCEEEECCCGGG--HHHHHHHHTTSCHHHHTTE
T ss_pred HHHHHHHhCCCCC-CcEEEEECCCCccccCCCCHHHHHHHHHHHHHCCCeEEEEeChhh--HHHHHHHHHhhhhccccce
Confidence 4456677776532 2345566676 55667654 888888888767899999886542 344555554332 134
Q ss_pred EEe-cccChHHHHHHHHHccEEEeCCCCCCCcHHHHHHHHcCCceEEcC
Q 007247 460 RGV-AKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVAS 507 (611)
Q Consensus 460 ~~~-~~~~~~~~~~i~~~aDv~l~pS~~E~~gl~~lEAma~G~PvI~s~ 507 (611)
... +..+-.++..+++.||++|-.. .|..-+ |.++|+|+|+--
T Consensus 244 ~~l~g~~sl~e~~ali~~a~l~I~~D----sg~~Hl-Aaa~g~P~v~lf 287 (348)
T 1psw_A 244 RNLAGETQLDQAVILIAACKAIVTND----SGLMHV-AAALNRPLVALY 287 (348)
T ss_dssp EECTTTSCHHHHHHHHHTSSEEEEES----SHHHHH-HHHTTCCEEEEE
T ss_pred EeccCcCCHHHHHHHHHhCCEEEecC----CHHHHH-HHHcCCCEEEEE
Confidence 333 3345566778999999999875 355555 999999999853
No 57
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=95.87 E-value=0.04 Score=55.07 Aligned_cols=94 Identities=12% Similarity=0.050 Sum_probs=60.4
Q ss_pred cEEEEEcCcccccCHHHHHHHHHhcccCCcEEEEEeCCCchhHHHHHHHHHHCCCceEEecccChHHHHHHHHHccEEEe
Q 007247 403 PVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILI 482 (611)
Q Consensus 403 ~~il~iGrl~~~Kg~d~li~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~i~~~aDv~l~ 482 (611)
.++++.|..+...-.+.+++++.+. .. -.+|.|.+.+. .+.+++...+.+ ++.... |..+ +..+|+.||++|.
T Consensus 159 ~ILv~~GG~d~~~l~~~vl~~L~~~--~~-i~vv~G~~~~~-~~~l~~~~~~~~-~v~v~~-~~~~-m~~~m~~aDlvI~ 231 (282)
T 3hbm_A 159 DFFICMGGTDIKNLSLQIASELPKT--KI-ISIATSSSNPN-LKKLQKFAKLHN-NIRLFI-DHEN-IAKLMNESNKLII 231 (282)
T ss_dssp EEEEECCSCCTTCHHHHHHHHSCTT--SC-EEEEECTTCTT-HHHHHHHHHTCS-SEEEEE-SCSC-HHHHHHTEEEEEE
T ss_pred eEEEEECCCchhhHHHHHHHHhhcC--CC-EEEEECCCchH-HHHHHHHHhhCC-CEEEEe-CHHH-HHHHHHHCCEEEE
Confidence 3566778766544334445554432 23 34667888653 455555555444 465543 4333 5579999999997
Q ss_pred CCCCCCCcHHHHHHHHcCCceEEcCC
Q 007247 483 PSRFEPCGLIQLHAMRYGTVPIVAST 508 (611)
Q Consensus 483 pS~~E~~gl~~lEAma~G~PvI~s~~ 508 (611)
+ .|.++.|++++|+|.|.-..
T Consensus 232 ~-----gG~T~~E~~~~g~P~i~ip~ 252 (282)
T 3hbm_A 232 S-----ASSLVNEALLLKANFKAICY 252 (282)
T ss_dssp E-----SSHHHHHHHHTTCCEEEECC
T ss_pred C-----CcHHHHHHHHcCCCEEEEeC
Confidence 3 36899999999999888653
No 58
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=95.08 E-value=0.35 Score=54.89 Aligned_cols=231 Identities=11% Similarity=0.062 Sum_probs=119.3
Q ss_pred HhhhccEEEecCHHHHHHHHcCcCCCcccchhhhccceeEeeCCccc--CCcCCCCccccccccCcchhhhccHHHHHHH
Q 007247 313 GILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDV--QEWNPLTDKYIGVKYDASTVMDAKPLLKEAL 390 (611)
Q Consensus 313 ~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~Ngvd~--~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (611)
.....|.+++.|+...+.+.+ .++.+.+ + ++.-|..- ..++.. ......+.+
T Consensus 475 ~~~~~D~~~~~s~~~~~~~~~--~f~~~~~------~--i~~~G~PR~D~l~~~~----------------~~~~~~~~~ 528 (729)
T 3l7i_A 475 ETSRWDYLISPNRYSTEIFRS--AFWMDEE------R--ILEIGYPRNDVLVNRA----------------NDQEYLDEI 528 (729)
T ss_dssp HHTTCSEEEESSHHHHHHHHH--HTCCCGG------G--EEESCCGGGHHHHHST----------------TCHHHHHHH
T ss_pred hhccCCEEEeCCHHHHHHHHH--HhCCCcc------e--EEEcCCCchHHHhccc----------------chHHHHHHH
Confidence 345689999999999988875 3554432 2 33344311 011111 112346678
Q ss_pred HHHhCCCCCCCCcEEEEEcCcccc----cC-----HHHHHHHHHhcccCCcEEEEEeCCCchhHHHHHHHHHHCCCceEE
Q 007247 391 QAEVGLPVDRNIPVIGFIGRLEEQ----KG-----SDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARG 461 (611)
Q Consensus 391 ~~~~gl~~~~~~~~il~iGrl~~~----Kg-----~d~li~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~ 461 (611)
+++++++. ++++|+|.-..... +| ...-++.+.+...+++.|++-. .+...+.+. + ..+.+.+..
T Consensus 529 ~~~~~~~~--~kk~ILyaPT~r~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~li~r~--Hp~~~~~~~-~-~~~~~~~~~ 602 (729)
T 3l7i_A 529 RTHLNLPS--DKKVIMYAPTWRDDEFVSKGKYLFELKIDLDNLYKELGDDYVILLRM--HYLISNALD-L-SGYENFAID 602 (729)
T ss_dssp HHHTTCCS--SCEEEEECCCCCGGGCCGGGSSCCCCTTCHHHHHHHHTTTEEEEECC--CHHHHTTCC-C-TTCTTTEEE
T ss_pred HHHhCCCC--CCeEEEEeeeeeCCccccccccccchhhHHHHHHHHcCCCeEEEEec--Ccchhcccc-c-cccCCcEEe
Confidence 88999874 56899999776543 11 1122333333333577766643 221111110 0 112233333
Q ss_pred ecccChHHHHHHHHHccEEEeCCCCCCCcHHHHHHHHcCCceEEcCCcccccceecCcceEEecccccccccCCccCHHH
Q 007247 462 VAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAA 541 (611)
Q Consensus 462 ~~~~~~~~~~~i~~~aDv~l~pS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~~ 541 (611)
...+ +.+.+++..||++|- -++-++.|++..++|||.-.. ...+... ...|+.+. +..+.--.-..|.++
T Consensus 603 ~~~~--~di~~ll~~aD~lIT-----DySSv~fD~~~l~kPiif~~~-D~~~Y~~-~~rg~y~d-~~~~~pg~~~~~~~e 672 (729)
T 3l7i_A 603 VSNY--NDVSELFLISDCLIT-----DYSSVMFDYGILKRPQFFFAY-DIDKYDK-GLRGFYMN-YMEDLPGPIYTEPYG 672 (729)
T ss_dssp CTTC--SCHHHHHHTCSEEEE-----SSCTHHHHHGGGCCCEEEECT-TTTTTTS-SCCSBSSC-TTSSSSSCEESSHHH
T ss_pred CCCC--cCHHHHHHHhCEEEe-----echHHHHhHHhhCCCEEEecC-CHHHHhh-ccCCcccC-hhHhCCCCeECCHHH
Confidence 3222 235579999999983 256789999999999997631 1111111 11233220 000000001367899
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhhCCch--HHHHHHHHHHHHHH
Q 007247 542 VSTTVRRALATYGTQALAEMMKNGMAQDLSWK--GPAKKWEETLLNLE 587 (611)
Q Consensus 542 la~~i~~ll~~~~~~~~~~~~~~~~~~~fsw~--~~a~~~~~~~~~l~ 587 (611)
|.++|...... ...+.+..++...+-+.++ ..+++..+.+.+..
T Consensus 673 L~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~dg~as~ri~~~i~~~~ 718 (729)
T 3l7i_A 673 LAKELKNLDKV--QQQYQEKIDAFYDRFCSVDNGKASQYIGDLIHKDI 718 (729)
T ss_dssp HHHHHTTHHHH--HHHTHHHHHHHHHHHSTTCCSCHHHHHHHHHHHHH
T ss_pred HHHHHhhhhcc--chhHHHHHHHHHHHhCCccCChHHHHHHHHHHhcC
Confidence 99999988764 3333333333333333333 45666555544433
No 59
>2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis, glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP: c.87.1.10 PDB: 2c1z_A* 2c9z_A*
Probab=94.37 E-value=0.17 Score=54.01 Aligned_cols=131 Identities=11% Similarity=0.010 Sum_probs=75.3
Q ss_pred CCcEEEEEcCcccccCHHHHHHHHHhcccCCcEEEEE-eCCCc-hhHHHHHHHHHHCCCceEEecccChHHHHHHHH--H
Q 007247 401 NIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVL-GTGKK-PMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--G 476 (611)
Q Consensus 401 ~~~~il~iGrl~~~Kg~d~li~a~~~l~~~~~~lviv-G~g~~-~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~i~~--~ 476 (611)
+..+++..|.+... ..+.+.+.+..|.+.+++++++ |.... ...+.+ ....+.++.... |-.+ . .+++ .
T Consensus 271 ~~vv~vs~GS~~~~-~~~~~~~~~~~l~~~~~~~lw~~~~~~~~~l~~~~---~~~~~~~~~v~~-w~pq-~-~vL~h~~ 343 (456)
T 2c1x_A 271 TSVVYISFGTVTTP-PPAEVVALSEALEASRVPFIWSLRDKARVHLPEGF---LEKTRGYGMVVP-WAPQ-A-EVLAHEA 343 (456)
T ss_dssp TCEEEEECCSSCCC-CHHHHHHHHHHHHHHTCCEEEECCGGGGGGSCTTH---HHHHTTTEEEES-CCCH-H-HHHTSTT
T ss_pred cceEEEecCccccC-CHHHHHHHHHHHHhcCCeEEEEECCcchhhCCHHH---HhhcCCceEEec-CCCH-H-HHhcCCc
Confidence 34566677877643 3344444444443335666554 43221 111111 111234455444 4333 2 4788 6
Q ss_pred ccEEEeCCCCCCCcHHHHHHHHcCCceEEcCCcc----cccceecC-cceEEecccccccccCCc--cCHHHHHHHHHHH
Q 007247 477 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGG----LVDTVEEG-FTGFQMGSFSVDCEAVDP--VDVAAVSTTVRRA 549 (611)
Q Consensus 477 aDv~l~pS~~E~~gl~~lEAma~G~PvI~s~~gg----~~e~v~~g-~~G~l~~~~~~~~~~v~~--~d~~~la~~i~~l 549 (611)
+|++| ++ +=.++++||+++|+|.|+-...+ ....+.+. +.|..+ +. -+.++++++|+++
T Consensus 344 ~~~fv--th--~G~~S~~Eal~~GvP~i~~P~~~dQ~~Na~~l~~~~g~g~~l----------~~~~~~~~~l~~~i~~l 409 (456)
T 2c1x_A 344 VGAFV--TH--CGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRI----------EGGVFTKSGLMSCFDQI 409 (456)
T ss_dssp EEEEE--EC--CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTSCCEEEC----------GGGSCCHHHHHHHHHHH
T ss_pred CCEEE--ec--CCcchHHHHHHhCceEEecCChhhHHHHHHHHHHHhCeEEEe----------cCCCcCHHHHHHHHHHH
Confidence 66766 33 22478999999999999986532 23344455 678765 32 3689999999999
Q ss_pred HHh
Q 007247 550 LAT 552 (611)
Q Consensus 550 l~~ 552 (611)
+++
T Consensus 410 l~~ 412 (456)
T 2c1x_A 410 LSQ 412 (456)
T ss_dssp HHS
T ss_pred HCC
Confidence 987
No 60
>3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold, GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A {Medicago truncatula} SCOP: c.87.1.0 PDB: 3hbj_A*
Probab=94.19 E-value=0.24 Score=52.95 Aligned_cols=135 Identities=13% Similarity=0.020 Sum_probs=80.2
Q ss_pred CcEEEEEcCcccccCHHHHHHHHHhcccCCcEEEEEeCCCchhHHHHHHHHHHCCCceEEecccChHHHHHHHHHccEEE
Q 007247 402 IPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFIL 481 (611)
Q Consensus 402 ~~~il~iGrl~~~Kg~d~li~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~i~~~aDv~l 481 (611)
..+++..|.+... ..+.+.+.+..|.+.+.+++++-.+.. ....-+.+....++++... .|-.+ ..+++.+++.+
T Consensus 274 ~vVyvsfGS~~~~-~~~~~~el~~~l~~~~~~flw~~~~~~-~~~lp~~~~~~~~~~~~vv-~w~Pq--~~vL~h~~v~~ 348 (454)
T 3hbf_A 274 SVVYISFGSVVTP-PPHELTALAESLEECGFPFIWSFRGDP-KEKLPKGFLERTKTKGKIV-AWAPQ--VEILKHSSVGV 348 (454)
T ss_dssp CEEEEECCSSCCC-CHHHHHHHHHHHHHHCCCEEEECCSCH-HHHSCTTHHHHTTTTEEEE-SSCCH--HHHHHSTTEEE
T ss_pred ceEEEecCCCCcC-CHHHHHHHHHHHHhCCCeEEEEeCCcc-hhcCCHhHHhhcCCceEEE-eeCCH--HHHHhhcCcCe
Confidence 3456677877642 234444444444333667766543321 1111112223334556655 44333 25899999777
Q ss_pred eCCCCCCCc-HHHHHHHHcCCceEEcCCcc----cccceecC-cceEEecccccccccCCccCHHHHHHHHHHHHHh
Q 007247 482 IPSRFEPCG-LIQLHAMRYGTVPIVASTGG----LVDTVEEG-FTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (611)
Q Consensus 482 ~pS~~E~~g-l~~lEAma~G~PvI~s~~gg----~~e~v~~g-~~G~l~~~~~~~~~~v~~~d~~~la~~i~~ll~~ 552 (611)
+-++ +| .+++||+++|+|.|+-...+ ....+.+. +.|..+. -..-+.++++++|++++++
T Consensus 349 fvtH---~G~~S~~Eal~~GvP~i~~P~~~DQ~~Na~~v~~~~g~Gv~l~--------~~~~~~~~l~~av~~ll~~ 414 (454)
T 3hbf_A 349 FLTH---SGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIGVGVD--------NGVLTKESIKKALELTMSS 414 (454)
T ss_dssp EEEC---CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHTTSCSEEECG--------GGSCCHHHHHHHHHHHHSS
T ss_pred EEec---CCcchHHHHHHcCCCEecCcccccHHHHHHHHHHhhCeeEEec--------CCCCCHHHHHHHHHHHHCC
Confidence 6676 44 68999999999999976533 23344453 6787651 0124689999999999976
No 61
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation, isoflavonoid, uridine diphosphate glycosyltransferase; 2.10A {Medicago truncatula} SCOP: c.87.1.10
Probab=93.63 E-value=0.58 Score=50.21 Aligned_cols=133 Identities=6% Similarity=-0.083 Sum_probs=77.6
Q ss_pred CcEEEEEcCcccccCHHHHHHHHHhcccCCcEEEEEeCCC-----c-hhHHHHHHHHHHCCCceEEecccChHHHHHHHH
Q 007247 402 IPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGK-----K-PMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA 475 (611)
Q Consensus 402 ~~~il~iGrl~~~Kg~d~li~a~~~l~~~~~~lvivG~g~-----~-~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~i~~ 475 (611)
..+++..|.+.. ...+.+.+.+..|.+.+.+++++-... . .+.+.+ ....++++.... |-.+. .+++
T Consensus 296 ~vv~vs~GS~~~-~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~l~~~~---~~~~~~~~~v~~-~~pq~--~~L~ 368 (482)
T 2pq6_A 296 SVVYVNFGSTTV-MTPEQLLEFAWGLANCKKSFLWIIRPDLVIGGSVIFSSEF---TNEIADRGLIAS-WCPQD--KVLN 368 (482)
T ss_dssp CEEEEECCSSSC-CCHHHHHHHHHHHHHTTCEEEEECCGGGSTTTGGGSCHHH---HHHHTTTEEEES-CCCHH--HHHT
T ss_pred ceEEEecCCccc-CCHHHHHHHHHHHHhcCCcEEEEEcCCccccccccCcHhH---HHhcCCCEEEEe-ecCHH--HHhc
Confidence 345666777653 233444444444444467877764321 0 011222 222345566554 43332 4897
Q ss_pred HccEEEeCCCCCCCcHHHHHHHHcCCceEEcCCcc----ccccee-cCcceEEecccccccccCCccCHHHHHHHHHHHH
Q 007247 476 GADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGG----LVDTVE-EGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRAL 550 (611)
Q Consensus 476 ~aDv~l~pS~~E~~gl~~lEAma~G~PvI~s~~gg----~~e~v~-~g~~G~l~~~~~~~~~~v~~~d~~~la~~i~~ll 550 (611)
.+++-++-++ +=.++++||+++|+|.|+-...+ ....+. +-+.|+.+. ..-+.++++++|++++
T Consensus 369 h~~~~~~vth--~G~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~---------~~~~~~~l~~~i~~ll 437 (482)
T 2pq6_A 369 HPSIGGFLTH--CGWNSTTESICAGVPMLCWPFFADQPTDCRFICNEWEIGMEID---------TNVKREELAKLINEVI 437 (482)
T ss_dssp STTEEEEEEC--CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTSCCEEECC---------SSCCHHHHHHHHHHHH
T ss_pred CCCCCEEEec--CCcchHHHHHHcCCCEEecCcccchHHHHHHHHHHhCEEEEEC---------CCCCHHHHHHHHHHHH
Confidence 7776444455 22468999999999999987543 222332 456777651 2347899999999999
Q ss_pred Hh
Q 007247 551 AT 552 (611)
Q Consensus 551 ~~ 552 (611)
++
T Consensus 438 ~~ 439 (482)
T 2pq6_A 438 AG 439 (482)
T ss_dssp TS
T ss_pred cC
Confidence 87
No 62
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase, N-glucosyltransferase, UDP-glucose- dependent, plant glycosyltransferase; HET: UDP; 1.45A {Arabidopsis thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Probab=93.16 E-value=0.97 Score=48.51 Aligned_cols=136 Identities=10% Similarity=-0.025 Sum_probs=77.8
Q ss_pred CCcEEEEEcCcccccCHHHHHHHHHhcccCCcEEEEEeCCCc--------------hhHHHH-HHHHHHCCCceEEeccc
Q 007247 401 NIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKK--------------PMEKQL-EQLEILYPEKARGVAKF 465 (611)
Q Consensus 401 ~~~~il~iGrl~~~Kg~d~li~a~~~l~~~~~~lvivG~g~~--------------~~~~~l-~~l~~~~~~~v~~~~~~ 465 (611)
+..+++..|.+.. ...+.+.+.+..|.+.+.+++++-.... .....+ +.......++-.....|
T Consensus 268 ~~vvyvs~GS~~~-~~~~~~~~~~~al~~~~~~~lw~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~g~~v~~w 346 (480)
T 2vch_A 268 GSVLYVSFGSGGT-LTCEQLNELALGLADSEQRFLWVIRSPSGIANSSYFDSHSQTDPLTFLPPGFLERTKKRGFVIPFW 346 (480)
T ss_dssp TCEEEEECTTTCC-CCHHHHHHHHHHHHHTTCEEEEEECCCCSSTTTTTTCC--CSCGGGGSCTTHHHHTTTTEEEEESC
T ss_pred CceEEEecccccC-CCHHHHHHHHHHHHhcCCcEEEEECCccccccccccccccccchhhhcCHHHHHHhCCCeEEEeCc
Confidence 3456777888753 3445555555555444677766543211 010000 00111111111222224
Q ss_pred ChHHHHHHHHHccEEEeCCCCCCCc-HHHHHHHHcCCceEEcCCcc----cccce-ecCcceEEecccccccccCC----
Q 007247 466 NIPLAHMIIAGADFILIPSRFEPCG-LIQLHAMRYGTVPIVASTGG----LVDTV-EEGFTGFQMGSFSVDCEAVD---- 535 (611)
Q Consensus 466 ~~~~~~~i~~~aDv~l~pS~~E~~g-l~~lEAma~G~PvI~s~~gg----~~e~v-~~g~~G~l~~~~~~~~~~v~---- 535 (611)
-... .+++.+++.++-++ +| ++++||+++|+|.|+-...+ ....+ ++-+.|..+ +
T Consensus 347 ~Pq~--~vL~h~~v~~fvtH---gG~~S~~Eal~~GvP~i~~P~~~DQ~~na~~l~~~~G~g~~l----------~~~~~ 411 (480)
T 2vch_A 347 APQA--QVLAHPSTGGFLTH---CGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDIRAALRP----------RAGDD 411 (480)
T ss_dssp CCHH--HHHHSTTEEEEEEC---CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTTCCEECC----------CCCTT
T ss_pred cCHH--HHhCCCCcCeEEec---ccchhHHHHHHcCCCEEeccccccchHHHHHHHHHhCeEEEe----------ecccC
Confidence 3332 58999997666666 34 68999999999999976543 23333 455677754 3
Q ss_pred -ccCHHHHHHHHHHHHHh
Q 007247 536 -PVDVAAVSTTVRRALAT 552 (611)
Q Consensus 536 -~~d~~~la~~i~~ll~~ 552 (611)
.-+.++++++|++++++
T Consensus 412 ~~~~~~~l~~av~~vl~~ 429 (480)
T 2vch_A 412 GLVRREEVARVVKGLMEG 429 (480)
T ss_dssp SCCCHHHHHHHHHHHHTS
T ss_pred CccCHHHHHHHHHHHhcC
Confidence 24789999999999973
No 63
>2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A {Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A*
Probab=91.17 E-value=1.5 Score=44.09 Aligned_cols=139 Identities=12% Similarity=0.104 Sum_probs=82.8
Q ss_pred cEEEEEcCcccccCH--HHHHHHHHhcccCCcEEEEEeCCCchhHHHHHHHHHHCCCceEEecccChHHHHHHHHHccEE
Q 007247 403 PVIGFIGRLEEQKGS--DILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFI 480 (611)
Q Consensus 403 ~~il~iGrl~~~Kg~--d~li~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~i~~~aDv~ 480 (611)
.+++..|.=.+.|.+ +.+.+.++.|.+.++++++.+.++. -.+..+++....++ +...+..+-.++..+++.||++
T Consensus 180 ~i~l~pga~~~~k~wp~~~~~~l~~~L~~~~~~vvl~~g~~~-e~~~~~~i~~~~~~-~~l~g~~sl~el~ali~~a~l~ 257 (326)
T 2gt1_A 180 YAVFLHATTRDDKHWPEEHWRELIGLLADSGIRIKLPWGAPH-EEERAKRLAEGFAY-VEVLPKMSLEGVARVLAGAKFV 257 (326)
T ss_dssp EEEEECCCSSGGGSCCHHHHHHHHHHTTTTCCEEEECCSSHH-HHHHHHHHHTTCTT-EEECCCCCHHHHHHHHHTCSEE
T ss_pred EEEEEeCCCCccccCCHHHHHHHHHHHHHCCCcEEEecCCHH-HHHHHHHHHhhCCc-ccccCCCCHHHHHHHHHhCCEE
Confidence 455666655556654 4888888888777899888743432 23445555554443 4444455666777899999999
Q ss_pred EeCCCCCCCcHHHHHHHHcCCceEEcCCcccccceec-CcceEEe-cccccccccCCccCHHHHHHHHHHHHHh
Q 007247 481 LIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEE-GFTGFQM-GSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (611)
Q Consensus 481 l~pS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~-g~~G~l~-~~~~~~~~~v~~~d~~~la~~i~~ll~~ 552 (611)
|-.- .|..=+ |.++|+|+|+--...-+..... +.....+ ++ ..| +..=+++++.+++.++++.
T Consensus 258 I~~D----SG~~Hl-Aaa~g~P~v~lfg~t~p~~~~P~~~~~~~~~~~--~~c--m~~I~~~~V~~~i~~~l~~ 322 (326)
T 2gt1_A 258 VSVD----TGLSHL-TAALDRPNITVYGPTDPGLIGGYGKNQMVCRAP--GNE--LSQLTANAVKQFIEENAEK 322 (326)
T ss_dssp EEES----SHHHHH-HHHTTCCEEEEESSSCHHHHCCCSSSEEEEECG--GGC--GGGCCHHHHHHHHHHTTTT
T ss_pred EecC----CcHHHH-HHHcCCCEEEEECCCChhhcCCCCCCceEecCC--ccc--ccCCCHHHHHHHHHHHHHH
Confidence 9664 366666 7779999998632221111111 1111111 10 111 2445788888888887764
No 64
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase; HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10 PDB: 2acw_A*
Probab=89.49 E-value=6.6 Score=41.67 Aligned_cols=136 Identities=11% Similarity=0.076 Sum_probs=74.8
Q ss_pred CcEEEEEcCcccccCHHHHHHHHHhcccCCcEEEEEeCCC-chhHHHHH-HHHHHCCCceEEecccChHHHHHHHH--Hc
Q 007247 402 IPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGK-KPMEKQLE-QLEILYPEKARGVAKFNIPLAHMIIA--GA 477 (611)
Q Consensus 402 ~~~il~iGrl~~~Kg~d~li~a~~~l~~~~~~lvivG~g~-~~~~~~l~-~l~~~~~~~v~~~~~~~~~~~~~i~~--~a 477 (611)
..+++..|.+...-+.+.+.+++..|.+.+.+++++-... ..+.+.+. .... ++++.... |-.+. .+++ .+
T Consensus 277 ~vv~vs~GS~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~l~~~~~~~~~~--~~~~~v~~-w~pq~--~vL~h~~~ 351 (463)
T 2acv_A 277 SVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLWSNSAEKKVFPEGFLEWMEL--EGKGMICG-WAPQV--EVLAHKAI 351 (463)
T ss_dssp CEEEEECCSSCCCCCHHHHHHHHHHHHHHTCEEEEECCCCGGGSCTTHHHHHHH--HCSEEEES-SCCHH--HHHHSTTE
T ss_pred ceEEEEeccccccCCHHHHHHHHHHHHhCCCcEEEEECCCcccCChhHHHhhcc--CCCEEEEc-cCCHH--HHhCCCcc
Confidence 4566777887622233444444444433467776654332 11211121 1110 23454444 43332 4776 56
Q ss_pred cEEEeCCCCCCCcHHHHHHHHcCCceEEcCCcc----cccc-eecCcceEEec-ccccccccCC--ccCHHHHHHHHHHH
Q 007247 478 DFILIPSRFEPCGLIQLHAMRYGTVPIVASTGG----LVDT-VEEGFTGFQMG-SFSVDCEAVD--PVDVAAVSTTVRRA 549 (611)
Q Consensus 478 Dv~l~pS~~E~~gl~~lEAma~G~PvI~s~~gg----~~e~-v~~g~~G~l~~-~~~~~~~~v~--~~d~~~la~~i~~l 549 (611)
|++|. + +=.++++||+++|+|.|+-...+ .... +++.+.|+.+. ... -. .-+.++++++|+++
T Consensus 352 ~~fvt--h--~G~~s~~Eal~~GvP~i~~P~~~dQ~~Na~~lv~~~g~g~~l~~~~~-----~~~~~~~~~~l~~ai~~l 422 (463)
T 2acv_A 352 GGFVS--H--CGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRVDYR-----KGSDVVAAEEIEKGLKDL 422 (463)
T ss_dssp EEEEE--C--CCHHHHHHHHHTTCCEEECCCSTTHHHHHHHHHHTSCCEEESCSSCC-----TTCCCCCHHHHHHHHHHH
T ss_pred CeEEe--c--CCchhHHHHHHcCCCeeeccchhhhHHHHHHHHHHcCeEEEEecccC-----CCCccccHHHHHHHHHHH
Confidence 66663 3 22478999999999999986533 2333 45666777541 000 01 24789999999999
Q ss_pred HH
Q 007247 550 LA 551 (611)
Q Consensus 550 l~ 551 (611)
++
T Consensus 423 l~ 424 (463)
T 2acv_A 423 MD 424 (463)
T ss_dssp TC
T ss_pred Hh
Confidence 96
No 65
>2jzc_A UDP-N-acetylglucosamine transferase subunit ALG13; rossmann-like fold, endoplasmic reticulum, glycosyltransferase, structural genomics; NMR {Saccharomyces cerevisiae} PDB: 2ks6_A
Probab=86.43 E-value=1 Score=43.00 Aligned_cols=41 Identities=20% Similarity=0.217 Sum_probs=30.3
Q ss_pred ccChHHHHHHHH-HccEEEeCCCCCCCcHHHHHHHHcCCceEEcCCc
Q 007247 464 KFNIPLAHMIIA-GADFILIPSRFEPCGLIQLHAMRYGTVPIVASTG 509 (611)
Q Consensus 464 ~~~~~~~~~i~~-~aDv~l~pS~~E~~gl~~lEAma~G~PvI~s~~g 509 (611)
.|..+ +..+|+ .||++|.= +=..+++|++++|+|.|+-...
T Consensus 120 ~f~~~-m~~~l~~~AdlvIsh----aGagTv~Eal~~G~P~IvVP~~ 161 (224)
T 2jzc_A 120 DFSTK-MQSIIRDYSDLVISH----AGTGSILDSLRLNKPLIVCVND 161 (224)
T ss_dssp CSSSS-HHHHHHHHCSCEEES----SCHHHHHHHHHTTCCCCEECCS
T ss_pred eccch-HHHHHHhcCCEEEEC----CcHHHHHHHHHhCCCEEEEcCc
Confidence 44333 556899 99999943 3357899999999998886543
No 66
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=78.76 E-value=1.8 Score=42.93 Aligned_cols=44 Identities=16% Similarity=0.103 Sum_probs=29.2
Q ss_pred ccCCCceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEee
Q 007247 80 VCGVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAP 126 (611)
Q Consensus 80 ~~~~~MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~ 126 (611)
.-|+.||||+|... |. ..+=...+......+|.+.||+|+++-.
T Consensus 18 ~~m~~MKiLII~aH--P~-~~S~n~aL~~~~~~~l~~~G~eV~v~DL 61 (280)
T 4gi5_A 18 LYFQSMKVLLIYAH--PE-PRSLNGALKNFAIRHLQQAGHEVQVSDL 61 (280)
T ss_dssp ----CCEEEEEECC--SC-TTSHHHHHHHHHHHHHHHTTCEEEEEET
T ss_pred chhhCCeEEEEEeC--CC-CccHHHHHHHHHHHHHHHCCCeEEEEEc
Confidence 34778999999975 64 2222344556677889999999999853
No 67
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=76.25 E-value=29 Score=28.88 Aligned_cols=109 Identities=13% Similarity=0.142 Sum_probs=67.8
Q ss_pred CcEEEEEeCCCchhHHHHHHHHHHCCCceEEecccChHHHHHHHH--HccEEEeCCCC-CCCcHHHHHHHHc-----CCc
Q 007247 431 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMRY-----GTV 502 (611)
Q Consensus 431 ~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~i~~--~aDv~l~pS~~-E~~gl~~lEAma~-----G~P 502 (611)
..+++|+.+.. ...+.++.+....+-.+. ..-+.+.+-..+. ..|++++-... +.-|+.+++.+.. .+|
T Consensus 6 ~~~iLivdd~~-~~~~~l~~~l~~~g~~v~--~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~~ 82 (140)
T 3grc_A 6 RPRILICEDDP-DIARLLNLMLEKGGFDSD--MVHSAAQALEQVARRPYAAMTVDLNLPDQDGVSLIRALRRDSRTRDLA 82 (140)
T ss_dssp CSEEEEECSCH-HHHHHHHHHHHHTTCEEE--EECSHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHTSGGGTTCE
T ss_pred CCCEEEEcCCH-HHHHHHHHHHHHCCCeEE--EECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCcccCCCC
Confidence 45677777544 345555555555442232 2223443333443 35888876554 4567888888765 677
Q ss_pred eEEcCCcc----cc-cceecCcceEEecccccccccCCccCHHHHHHHHHHHHHh
Q 007247 503 PIVASTGG----LV-DTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (611)
Q Consensus 503 vI~s~~gg----~~-e~v~~g~~G~l~~~~~~~~~~v~~~d~~~la~~i~~ll~~ 552 (611)
+|+-.... .. +.+..|..+++. .|.+.+++..+|.++++.
T Consensus 83 ii~~s~~~~~~~~~~~~~~~g~~~~l~----------kP~~~~~l~~~i~~~l~~ 127 (140)
T 3grc_A 83 IVVVSANAREGELEFNSQPLAVSTWLE----------KPIDENLLILSLHRAIDN 127 (140)
T ss_dssp EEEECTTHHHHHHHHCCTTTCCCEEEC----------SSCCHHHHHHHHHHHHHH
T ss_pred EEEEecCCChHHHHHHhhhcCCCEEEe----------CCCCHHHHHHHHHHHHHh
Confidence 77654322 22 445567788876 899999999999999986
No 68
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=73.23 E-value=40 Score=28.19 Aligned_cols=111 Identities=10% Similarity=0.024 Sum_probs=69.9
Q ss_pred CcEEEEEeCCCchhHHHHHHHHHHCCCceEEecccChHHHHHHHHH--ccEEEeCCCC-CCCcHHHHHHHHc-----CCc
Q 007247 431 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAG--ADFILIPSRF-EPCGLIQLHAMRY-----GTV 502 (611)
Q Consensus 431 ~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~i~~~--aDv~l~pS~~-E~~gl~~lEAma~-----G~P 502 (611)
..+++|+.+.. ...+.++.+....+........-+...+...+.. .|++++-... +.-|+.+++.+.. .+|
T Consensus 5 ~~~ILivdd~~-~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~p 83 (144)
T 3kht_A 5 SKRVLVVEDNP-DDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQAKYDLIILDIGLPIANGFEVMSAVRKPGANQHTP 83 (144)
T ss_dssp CEEEEEECCCH-HHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHTTCCCSEEEECTTCGGGCHHHHHHHHHSSSTTTTCC
T ss_pred CCEEEEEeCCH-HHHHHHHHHHHhcCCCeeEEEECCHHHHHHHhhcCCCCEEEEeCCCCCCCHHHHHHHHHhcccccCCC
Confidence 46777777644 3555666665555533222223344444444443 5888876554 4567888888765 577
Q ss_pred eEEcCCcc----cccceecCcceEEecccccccccCCcc-CHHHHHHHHHHHHHh
Q 007247 503 PIVASTGG----LVDTVEEGFTGFQMGSFSVDCEAVDPV-DVAAVSTTVRRALAT 552 (611)
Q Consensus 503 vI~s~~gg----~~e~v~~g~~G~l~~~~~~~~~~v~~~-d~~~la~~i~~ll~~ 552 (611)
+|+-.... ..+.+..|..+++. .|. +.+++.++|.++++.
T Consensus 84 ii~~s~~~~~~~~~~~~~~ga~~~l~----------Kp~~~~~~l~~~i~~~l~~ 128 (144)
T 3kht_A 84 IVILTDNVSDDRAKQCMAAGASSVVD----------KSSNNVTDFYGRIYAIFSY 128 (144)
T ss_dssp EEEEETTCCHHHHHHHHHTTCSEEEE----------CCTTSHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHcCCCEEEE----------CCCCcHHHHHHHHHHHHHH
Confidence 76644322 23345567888987 888 999999999999875
No 69
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=72.85 E-value=38 Score=28.25 Aligned_cols=108 Identities=14% Similarity=0.229 Sum_probs=67.9
Q ss_pred cEEEEEeCCCchhHHHHHHHHHHCCCceEEecccChHHHHHHHH----HccEEEeCCCC-CCCcHHHHHHHHc---CCce
Q 007247 432 VQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA----GADFILIPSRF-EPCGLIQLHAMRY---GTVP 503 (611)
Q Consensus 432 ~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~i~~----~aDv~l~pS~~-E~~gl~~lEAma~---G~Pv 503 (611)
.+++|+.+.+ ...+.++.+....+..+. ..-+.+.....+. ..|++++-... +.-|+.+++.+.. .+|+
T Consensus 4 ~~ilivdd~~-~~~~~l~~~l~~~g~~v~--~~~~~~~a~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~i 80 (143)
T 3jte_A 4 AKILVIDDES-TILQNIKFLLEIDGNEVL--TASSSTEGLRIFTENCNSIDVVITDMKMPKLSGMDILREIKKITPHMAV 80 (143)
T ss_dssp CEEEEECSCH-HHHHHHHHHHHHTTCEEE--EESSHHHHHHHHHHTTTTCCEEEEESCCSSSCHHHHHHHHHHHCTTCEE
T ss_pred CEEEEEcCCH-HHHHHHHHHHHhCCceEE--EeCCHHHHHHHHHhCCCCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeE
Confidence 4677777644 355556665555553332 2224444444454 56888876554 4567777776653 5676
Q ss_pred EEcCC-cc---cccceecCcceEEecccccccccCCccCHHHHHHHHHHHHHh
Q 007247 504 IVAST-GG---LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (611)
Q Consensus 504 I~s~~-gg---~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~~la~~i~~ll~~ 552 (611)
|+-.. .. ..+.+..|..+++. .|.+.+++..+|..+++.
T Consensus 81 i~ls~~~~~~~~~~~~~~g~~~~l~----------kp~~~~~l~~~l~~~~~~ 123 (143)
T 3jte_A 81 IILTGHGDLDNAILAMKEGAFEYLR----------KPVTAQDLSIAINNAINR 123 (143)
T ss_dssp EEEECTTCHHHHHHHHHTTCSEEEE----------SSCCHHHHHHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHHhCcceeEe----------CCCCHHHHHHHHHHHHHH
Confidence 65432 22 33455668888987 899999999999999875
No 70
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=71.88 E-value=2.5 Score=43.97 Aligned_cols=37 Identities=22% Similarity=0.250 Sum_probs=29.9
Q ss_pred ceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEeec
Q 007247 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (611)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~~ 127 (611)
|||++++. | .+|--.-...|+++|+++||+|+++++.
T Consensus 1 M~Il~~~~---~---~~GHv~P~l~la~~L~~~Gh~V~~~~~~ 37 (415)
T 1iir_A 1 MRVLLATC---G---SRGDTEPLVALAVRVRDLGADVRMCAPP 37 (415)
T ss_dssp CEEEEECC---S---CHHHHHHHHHHHHHHHHTTCEEEEEECG
T ss_pred CeEEEEcC---C---CchhHHHHHHHHHHHHHCCCeEEEEcCH
Confidence 89999852 3 3555556777999999999999999976
No 71
>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}
Probab=70.54 E-value=2.4 Score=41.74 Aligned_cols=27 Identities=33% Similarity=0.516 Sum_probs=22.0
Q ss_pred ccHHHHhccchHHHHhCCCeEEEEeec
Q 007247 101 GGLGDVLGGLPPALAANGHRVMTIAPR 127 (611)
Q Consensus 101 GG~~~~~~~La~~L~~~Gh~V~vit~~ 127 (611)
||.|.+-..|++.|.++||+|++++.+
T Consensus 7 GatGfIG~~L~~~L~~~G~~V~~l~R~ 33 (298)
T 4b4o_A 7 GGTGFIGTALTQLLNARGHEVTLVSRK 33 (298)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 566656667999999999999999754
No 72
>2hy5_A Putative sulfurtransferase DSRE; DSRE, DSRF, sulfur, structural genomics, PSI, protein initiative, berkeley structural genomics center, BSGC, TRAN; 1.72A {Allochromatium vinosum} SCOP: c.114.1.1 PDB: 2hyb_A
Probab=69.31 E-value=4.9 Score=34.50 Aligned_cols=40 Identities=15% Similarity=0.194 Sum_probs=30.8
Q ss_pred ceEEEEeeeecCccccccHHHHhccchHHHHhCCCeE-EEEeec
Q 007247 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRV-MTIAPR 127 (611)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V-~vit~~ 127 (611)
||++|+... +|+ ..-.......++.++.+.||+| .|+...
T Consensus 1 mk~~iiv~~-~p~--~~~~~~~al~~a~a~~~~g~~v~~vff~~ 41 (130)
T 2hy5_A 1 MKFALQINE-GPY--QHQASDSAYQFAKAALEKGHEIFRVFFYH 41 (130)
T ss_dssp CEEEEEECS-CTT--TSTHHHHHHHHHHHHHHTTCEEEEEEECG
T ss_pred CEEEEEEeC-CCC--CcHHHHHHHHHHHHHHhcCCeeCEEEEec
Confidence 789999876 675 3345566788999999999999 777644
No 73
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=68.45 E-value=48 Score=27.16 Aligned_cols=110 Identities=12% Similarity=0.064 Sum_probs=67.1
Q ss_pred cEEEEEeCCCchhHHHHHHHHHHCCCceEEecccChHHHHHHHH---------HccEEEeCCCC-CCCcHHHHHHHH---
Q 007247 432 VQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA---------GADFILIPSRF-EPCGLIQLHAMR--- 498 (611)
Q Consensus 432 ~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~i~~---------~aDv~l~pS~~-E~~gl~~lEAma--- 498 (611)
.+++|+.+.. ...+.+.......+........-+...+...+. ..|++++-... +.-|+-+++.+.
T Consensus 3 ~~ilivdd~~-~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~ 81 (140)
T 1k68_A 3 KKIFLVEDNK-ADIRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGEYANASRPDLILLXLNLPKKDGREVLAEIKSDP 81 (140)
T ss_dssp CEEEEECCCH-HHHHHHHHHHHTCSSCCEEEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSCSSSCHHHHHHHHHHST
T ss_pred CeEEEEeCCH-HHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHcccccccCCCCcEEEEecCCCcccHHHHHHHHHcCc
Confidence 4667777544 355556555555443112222234444444554 47888876554 446777777775
Q ss_pred --cCCceEEcCCcc----cccceecCcceEEecccccccccCCccCHHHHHHHHHHHHHh
Q 007247 499 --YGTVPIVASTGG----LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (611)
Q Consensus 499 --~G~PvI~s~~gg----~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~~la~~i~~ll~~ 552 (611)
..+|+|+-.... ..+.+..|..+++. .|-+.+++...|.++++.
T Consensus 82 ~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~----------kP~~~~~l~~~i~~~~~~ 131 (140)
T 1k68_A 82 TLKRIPVVVLSTSINEDDIFHSYDLHVNCYIT----------KSANLSQLFQIVKGIEEF 131 (140)
T ss_dssp TGGGSCEEEEESCCCHHHHHHHHHTTCSEEEE----------CCSSHHHHHHHHHHHHHH
T ss_pred ccccccEEEEecCCcHHHHHHHHHhchhheec----------CCCCHHHHHHHHHHHHHH
Confidence 356766543222 23344557788887 899999999999998874
No 74
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=68.42 E-value=51 Score=27.52 Aligned_cols=109 Identities=15% Similarity=0.116 Sum_probs=65.5
Q ss_pred CcEEEEEeCCCchhHHHHHHHHHHCCCceEEecccChHHHHHHHH--HccEEEeCCCC-CCCcHHHHHHHHc-----CCc
Q 007247 431 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMRY-----GTV 502 (611)
Q Consensus 431 ~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~i~~--~aDv~l~pS~~-E~~gl~~lEAma~-----G~P 502 (611)
..+++|+.+... ..+.+.......+ +.....-+.......+. ..|++++-... +.-|+.+++.+.. .+|
T Consensus 8 ~~~iLivd~~~~-~~~~l~~~L~~~g--~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~p 84 (147)
T 2zay_A 8 WWRIMLVDTQLP-ALAASISALSQEG--FDIIQCGNAIEAVPVAVKTHPHLIITEANMPKISGMDLFNSLKKNPQTASIP 84 (147)
T ss_dssp CEEEEEECTTGG-GGHHHHHHHHHHT--EEEEEESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHTSTTTTTSC
T ss_pred CceEEEEeCCHH-HHHHHHHHHHHcC--CeEEEeCCHHHHHHHHHcCCCCEEEEcCCCCCCCHHHHHHHHHcCcccCCCC
Confidence 567778876553 3333333333333 22222223333333333 36888876544 4467888888764 577
Q ss_pred eEEcC-Ccc---cccceecCcceEEecccccccccCCccCHHHHHHHHHHHHHh
Q 007247 503 PIVAS-TGG---LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (611)
Q Consensus 503 vI~s~-~gg---~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~~la~~i~~ll~~ 552 (611)
+|+-. ... ..+.+..|..+++. .|.+.+++...|..++..
T Consensus 85 ii~ls~~~~~~~~~~~~~~g~~~~l~----------kp~~~~~L~~~i~~~~~~ 128 (147)
T 2zay_A 85 VIALSGRATAKEEAQLLDMGFIDFIA----------KPVNAIRLSARIKRVLKL 128 (147)
T ss_dssp EEEEESSCCHHHHHHHHHHTCSEEEE----------SSCCHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHhCCCCEEEe----------CCCCHHHHHHHHHHHHHH
Confidence 66543 322 22334567889987 899999999999999876
No 75
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=68.34 E-value=41 Score=28.46 Aligned_cols=111 Identities=13% Similarity=0.118 Sum_probs=67.7
Q ss_pred CcEEEEEeCCCchhHHHHHHHHHHCCCceEEecccChHHHHHHHH-----------HccEEEeCCCC-CCCcHHHHHHHH
Q 007247 431 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA-----------GADFILIPSRF-EPCGLIQLHAMR 498 (611)
Q Consensus 431 ~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~i~~-----------~aDv~l~pS~~-E~~gl~~lEAma 498 (611)
..+++|+.+.+ ...+.++.+....+........-+...+...+. ..|++++-... +.-|+-+++.+.
T Consensus 4 ~~~ILivddd~-~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~dliilD~~l~~~~g~~~~~~lr 82 (152)
T 3heb_A 4 SVTIVMIEDDL-GHARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDKSGRVSAGRAQLVLLDLNLPDMTGIDILKLVK 82 (152)
T ss_dssp -CEEEEECCCH-HHHHHHHHHHHHTTCCCCEEEESSHHHHHHHHHCTTSSSGGGTTCBEEEEECSBCSSSBHHHHHHHHH
T ss_pred CceEEEEeCCH-HHHHHHHHHHHhCCCcceEEEeCCHHHHHHHHhccccccccccCCCCEEEEeCCCCCCcHHHHHHHHH
Confidence 45777777654 355566666555543112222234444444552 46888876544 456788888876
Q ss_pred c-----CCceEEcCCcc----cccceecCcceEEecccccccccCCccCHHHHHHHHHHHHHh
Q 007247 499 Y-----GTVPIVASTGG----LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (611)
Q Consensus 499 ~-----G~PvI~s~~gg----~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~~la~~i~~ll~~ 552 (611)
. .+|+|+-.... ..+.+..|..+++. .|-+.+++.++|.++...
T Consensus 83 ~~~~~~~~pii~~t~~~~~~~~~~~~~~g~~~~l~----------KP~~~~~l~~~i~~~~~~ 135 (152)
T 3heb_A 83 ENPHTRRSPVVILTTTDDQREIQRCYDLGANVYIT----------KPVNYENFANAIRQLGLF 135 (152)
T ss_dssp HSTTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEE----------CCSSHHHHHHHHHHHHHH
T ss_pred hcccccCCCEEEEecCCCHHHHHHHHHCCCcEEEe----------CCCCHHHHHHHHHHHHHH
Confidence 5 56766643322 23344567888887 899999999999988653
No 76
>2d1p_A TUSD, hypothetical UPF0163 protein YHEN; tRNA modification, sulfur transfer, structural genomics, translation; 2.15A {Escherichia coli} SCOP: c.114.1.1
Probab=68.00 E-value=5.4 Score=34.95 Aligned_cols=41 Identities=20% Similarity=0.202 Sum_probs=32.0
Q ss_pred CceEEEEeeeecCccccccHHHHhccchHHHHhCCCeE-EEEeec
Q 007247 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRV-MTIAPR 127 (611)
Q Consensus 84 ~MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V-~vit~~ 127 (611)
.||++|+... +|+ ..-.......++.++.+.||+| .|+--.
T Consensus 12 ~~~~~ivv~~-~Py--g~~~a~~Al~~A~aala~g~eV~~VFf~~ 53 (140)
T 2d1p_A 12 SMRFAIVVTG-PAY--GTQQASSAFQFAQALIADGHELSSVFFYR 53 (140)
T ss_dssp CCEEEEEECS-CSS--SSSHHHHHHHHHHHHHHTTCEEEEEEECG
T ss_pred ceEEEEEEcC-CCC--CcHHHHHHHHHHHHHHHCCCccCEEEEec
Confidence 5999999886 676 3445666788999999999999 777543
No 77
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=66.83 E-value=57 Score=27.49 Aligned_cols=111 Identities=18% Similarity=0.227 Sum_probs=65.0
Q ss_pred CcEEEEEeCCCchhHHHHHHHHHHCCCceEEecccChHHHHHHHH--HccEEEeCCCC-CCCcHHHHHHHHc---CCceE
Q 007247 431 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMRY---GTVPI 504 (611)
Q Consensus 431 ~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~i~~--~aDv~l~pS~~-E~~gl~~lEAma~---G~PvI 504 (611)
..+++|+.+.. ...+.++.+....+........-+.+.+...+. ..|++++-... +.-|+.+++.+.. .+|+|
T Consensus 20 m~~iLivdd~~-~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ii 98 (150)
T 4e7p_A 20 HMKVLVAEDQS-MLRDAMCQLLTLQPDVESVLQAKNGQEAIQLLEKESVDIAILDVEMPVKTGLEVLEWIRSEKLETKVV 98 (150)
T ss_dssp CEEEEEECSCH-HHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHTTSCCSEEEECSSCSSSCHHHHHHHHHHTTCSCEEE
T ss_pred ccEEEEEcCCH-HHHHHHHHHHHhCCCcEEEEEECCHHHHHHHhhccCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEE
Confidence 35666666543 344455555444432122122223333333443 35777776543 4567777777654 56666
Q ss_pred EcCCcc----cccceecCcceEEecccccccccCCccCHHHHHHHHHHHHHh
Q 007247 505 VASTGG----LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (611)
Q Consensus 505 ~s~~gg----~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~~la~~i~~ll~~ 552 (611)
+-.... ..+.+..|..+++. .|.+.+++.++|.++++.
T Consensus 99 ~ls~~~~~~~~~~~~~~g~~~~l~----------Kp~~~~~l~~~i~~~~~~ 140 (150)
T 4e7p_A 99 VVTTFKRAGYFERAVKAGVDAYVL----------KERSIADLMQTLHTVLEG 140 (150)
T ss_dssp EEESCCCHHHHHHHHHTTCSEEEE----------TTSCHHHHHHHHHHHHTT
T ss_pred EEeCCCCHHHHHHHHHCCCcEEEe----------cCCCHHHHHHHHHHHHcC
Confidence 543322 33445567889987 899999999999999875
No 78
>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=62.94 E-value=8 Score=37.96 Aligned_cols=44 Identities=18% Similarity=0.068 Sum_probs=32.8
Q ss_pred HHHHHHHccEEEeCCCCCCCcHHHHHHHHcCCceEEcCCccccc
Q 007247 470 AHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVD 513 (611)
Q Consensus 470 ~~~i~~~aDv~l~pS~~E~~gl~~lEAma~G~PvI~s~~gg~~e 513 (611)
+.+++..+|+++--+..+..--.+..++..|+|+|+..+|...+
T Consensus 67 l~~ll~~~DVVIDfT~p~a~~~~~~~al~~G~~vVigTTG~s~~ 110 (272)
T 4f3y_A 67 IERVCAEADYLIDFTLPEGTLVHLDAALRHDVKLVIGTTGFSEP 110 (272)
T ss_dssp HHHHHHHCSEEEECSCHHHHHHHHHHHHHHTCEEEECCCCCCHH
T ss_pred HHHHhcCCCEEEEcCCHHHHHHHHHHHHHcCCCEEEECCCCCHH
Confidence 44678899999987765544445677899999999988775443
No 79
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=60.55 E-value=78 Score=26.83 Aligned_cols=109 Identities=16% Similarity=0.157 Sum_probs=67.7
Q ss_pred CcEEEEEeCCCchhHHHHHHHHHHCCCceEEecccChHHHHHHHH--HccEEEeCCCC-CCCcHHHHHHHH-----cCCc
Q 007247 431 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMR-----YGTV 502 (611)
Q Consensus 431 ~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~i~~--~aDv~l~pS~~-E~~gl~~lEAma-----~G~P 502 (611)
..+++|+.+.. ...+.++++....+-.+ ...-+...+...+. ..|++++-... +.-|+.+++.+. ..+|
T Consensus 7 ~~~ILivdd~~-~~~~~l~~~L~~~g~~v--~~~~~~~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~p 83 (154)
T 3gt7_A 7 AGEILIVEDSP-TQAEHLKHILEETGYQT--EHVRNGREAVRFLSLTRPDLIISDVLMPEMDGYALCRWLKGQPDLRTIP 83 (154)
T ss_dssp CCEEEEECSCH-HHHHHHHHHHHTTTCEE--EEESSHHHHHHHHTTCCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSC
T ss_pred CCcEEEEeCCH-HHHHHHHHHHHHCCCEE--EEeCCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCCCcCCCC
Confidence 56777777644 34555555555444223 22224444444443 35888876554 456788888775 3567
Q ss_pred eEEcCC-cc---cccceecCcceEEecccccccccCCccCHHHHHHHHHHHHHh
Q 007247 503 PIVAST-GG---LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (611)
Q Consensus 503 vI~s~~-gg---~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~~la~~i~~ll~~ 552 (611)
+|+-.. .. ..+.+..|..+++. .|-+.+++...|.++++.
T Consensus 84 ii~~s~~~~~~~~~~~~~~g~~~~l~----------KP~~~~~l~~~i~~~l~~ 127 (154)
T 3gt7_A 84 VILLTILSDPRDVVRSLECGADDFIT----------KPCKDVVLASHVKRLLSG 127 (154)
T ss_dssp EEEEECCCSHHHHHHHHHHCCSEEEE----------SSCCHHHHHHHHHHHHHH
T ss_pred EEEEECCCChHHHHHHHHCCCCEEEe----------CCCCHHHHHHHHHHHHHH
Confidence 766432 22 23344567888887 899999999999999976
No 80
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation, isoflavonoid, uridine diphosphate glycosyltransferase; 2.10A {Medicago truncatula} SCOP: c.87.1.10
Probab=60.41 E-value=6.4 Score=41.94 Aligned_cols=40 Identities=15% Similarity=0.191 Sum_probs=30.3
Q ss_pred CCCceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEeec
Q 007247 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (611)
Q Consensus 82 ~~~MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~~ 127 (611)
+++++|+++.. | ..|--.-+..|++.|+++||+|+++++.
T Consensus 6 ~~~~~vl~~p~---p---~~GHi~P~l~La~~L~~rG~~VT~v~t~ 45 (482)
T 2pq6_A 6 NRKPHVVMIPY---P---VQGHINPLFKLAKLLHLRGFHITFVNTE 45 (482)
T ss_dssp --CCEEEEECC---S---SHHHHHHHHHHHHHHHHTTCEEEEEEEH
T ss_pred CCCCEEEEecC---c---cchhHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 44578998873 4 2454556788999999999999999876
No 81
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=60.31 E-value=67 Score=27.37 Aligned_cols=112 Identities=13% Similarity=0.190 Sum_probs=70.7
Q ss_pred ccCCcEEEEEeCCCchhHHHHHHHHHHCCCceEEecccChHHHHHHHHH--ccEEEeCCCC-CCCcHHHHHHHH-----c
Q 007247 428 IKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAG--ADFILIPSRF-EPCGLIQLHAMR-----Y 499 (611)
Q Consensus 428 ~~~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~i~~~--aDv~l~pS~~-E~~gl~~lEAma-----~ 499 (611)
.+++.+++|+-+.+ ...+.++.+-...+-.... ..-++...-..++. .|++++=-.. +--|+-+++.+. .
T Consensus 9 m~k~~rILiVDD~~-~~r~~l~~~L~~~G~~~v~-~a~~g~~al~~~~~~~~DlillD~~MP~mdG~el~~~ir~~~~~~ 86 (134)
T 3to5_A 9 LNKNMKILIVDDFS-TMRRIVKNLLRDLGFNNTQ-EADDGLTALPMLKKGDFDFVVTDWNMPGMQGIDLLKNIRADEELK 86 (134)
T ss_dssp CCTTCCEEEECSCH-HHHHHHHHHHHHTTCCCEE-EESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHSTTTT
T ss_pred hCCCCEEEEEeCCH-HHHHHHHHHHHHcCCcEEE-EECCHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHhCCCCC
Confidence 34578888887644 4566666666665522221 12345444444443 5777765443 456888888885 4
Q ss_pred CCceEEcC-Ccccc---cceecCcceEEecccccccccCCccCHHHHHHHHHHHHH
Q 007247 500 GTVPIVAS-TGGLV---DTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALA 551 (611)
Q Consensus 500 G~PvI~s~-~gg~~---e~v~~g~~G~l~~~~~~~~~~v~~~d~~~la~~i~~ll~ 551 (611)
.+|||.-. .+... +..+-|.++|+. .|-+++++.+.|.++++
T Consensus 87 ~ipvI~lTa~~~~~~~~~~~~~Ga~~yl~----------KP~~~~~L~~~i~~~l~ 132 (134)
T 3to5_A 87 HLPVLMITAEAKREQIIEAAQAGVNGYIV----------KPFTAATLKEKLDKIFE 132 (134)
T ss_dssp TCCEEEEESSCCHHHHHHHHHTTCCEEEE----------SSCCHHHHHHHHHHHCC
T ss_pred CCeEEEEECCCCHHHHHHHHHCCCCEEEE----------CCCCHHHHHHHHHHHHh
Confidence 67877644 33322 234468889987 99999999999998875
No 82
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=59.91 E-value=40 Score=27.88 Aligned_cols=106 Identities=12% Similarity=0.213 Sum_probs=57.3
Q ss_pred CcEEEEEeCCCchhHHHHHHHHHHCCCceEEecccChHHHHHHHH--HccEEEeCCCCCCCcHHHHHHHHc---CCceEE
Q 007247 431 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRFEPCGLIQLHAMRY---GTVPIV 505 (611)
Q Consensus 431 ~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~i~~--~aDv~l~pS~~E~~gl~~lEAma~---G~PvI~ 505 (611)
..+++|+.+.. ...+.+..+....+-.+. ..-+.+.....+. ..|++++| +.-|+.+++.+.. .+|+|+
T Consensus 18 ~~~ilivdd~~-~~~~~l~~~L~~~g~~v~--~~~~~~~al~~l~~~~~dlvi~~---~~~g~~~~~~l~~~~~~~~ii~ 91 (137)
T 2pln_A 18 SMRVLLIEKNS-VLGGEIEKGLNVKGFMAD--VTESLEDGEYLMDIRNYDLVMVS---DKNALSFVSRIKEKHSSIVVLV 91 (137)
T ss_dssp CSEEEEECSCH-HHHHHHHHHHHHTTCEEE--EESCHHHHHHHHHHSCCSEEEEC---STTHHHHHHHHHHHSTTSEEEE
T ss_pred CCeEEEEeCCH-HHHHHHHHHHHHcCcEEE--EeCCHHHHHHHHHcCCCCEEEEc---CccHHHHHHHHHhcCCCccEEE
Confidence 45566665443 233444444433332222 2223333323333 34777722 3346666666653 677666
Q ss_pred cC-Ccc---cccceecCcceEEecccccccccCCcc-CHHHHHHHHHHHHHh
Q 007247 506 AS-TGG---LVDTVEEGFTGFQMGSFSVDCEAVDPV-DVAAVSTTVRRALAT 552 (611)
Q Consensus 506 s~-~gg---~~e~v~~g~~G~l~~~~~~~~~~v~~~-d~~~la~~i~~ll~~ 552 (611)
-. ... ..+.+..|..+++. .|. +.+++...|..++..
T Consensus 92 ls~~~~~~~~~~~~~~g~~~~l~----------kP~~~~~~l~~~i~~~~~~ 133 (137)
T 2pln_A 92 SSDNPTSEEEVHAFEQGADDYIA----------KPYRSIKALVARIEARLRF 133 (137)
T ss_dssp EESSCCHHHHHHHHHTTCSEEEE----------SSCSCHHHHHHHHHHHTC-
T ss_pred EeCCCCHHHHHHHHHcCCceeee----------CCCCCHHHHHHHHHHHHhh
Confidence 43 222 23344567788887 888 999999999988764
No 83
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=59.71 E-value=5.8 Score=37.38 Aligned_cols=39 Identities=23% Similarity=0.385 Sum_probs=26.3
Q ss_pred cccCCCceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEeec
Q 007247 79 IVCGVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (611)
Q Consensus 79 ~~~~~~MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~~ 127 (611)
....++|+|++.+. +||+|. .+++.|.++||+|.+++..
T Consensus 16 ~~~l~~~~ilVtGa-------tG~iG~---~l~~~L~~~G~~V~~~~R~ 54 (236)
T 3e8x_A 16 NLYFQGMRVLVVGA-------NGKVAR---YLLSELKNKGHEPVAMVRN 54 (236)
T ss_dssp -----CCEEEEETT-------TSHHHH---HHHHHHHHTTCEEEEEESS
T ss_pred ccCcCCCeEEEECC-------CChHHH---HHHHHHHhCCCeEEEEECC
Confidence 34456788877664 466664 5778899999999999765
No 84
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=59.42 E-value=74 Score=26.22 Aligned_cols=110 Identities=6% Similarity=0.022 Sum_probs=66.5
Q ss_pred CCcEEEEEeCCCchhHHHHHHHHHHCCCceEEecccChHHHHHHHHH--ccEEEeCCCC-CCCcHHHHHHHHc-----CC
Q 007247 430 ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAG--ADFILIPSRF-EPCGLIQLHAMRY-----GT 501 (611)
Q Consensus 430 ~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~i~~~--aDv~l~pS~~-E~~gl~~lEAma~-----G~ 501 (611)
...+++|+.+.. ...+.+..+....+-.+. ..-+.+.....+.. .|++++-... +.-|+.+++.+.. .+
T Consensus 6 ~~~~iLivdd~~-~~~~~l~~~L~~~g~~v~--~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~ 82 (142)
T 3cg4_A 6 HKGDVMIVDDDA-HVRIAVKTILSDAGFHII--SADSGGQCIDLLKKGFSGVVLLDIMMPGMDGWDTIRAILDNSLEQGI 82 (142)
T ss_dssp CCCEEEEECSCH-HHHHHHHHHHHHTTCEEE--EESSHHHHHHHHHTCCCEEEEEESCCSSSCHHHHHHHHHHTTCCTTE
T ss_pred CCCeEEEEcCCH-HHHHHHHHHHHHCCeEEE--EeCCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhcccCCC
Confidence 356777777654 344555555544442232 22234444344443 5777775544 4467788888764 45
Q ss_pred ceEEc-CCc---ccccceecCcceEEecccccccccCCccCHHHHHHHHHHHHHh
Q 007247 502 VPIVA-STG---GLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (611)
Q Consensus 502 PvI~s-~~g---g~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~~la~~i~~ll~~ 552 (611)
|+|+- ... ...+.+..|..+++. .|-+.+++.+.|..++..
T Consensus 83 pii~~s~~~~~~~~~~~~~~g~~~~l~----------kp~~~~~l~~~i~~~~~~ 127 (142)
T 3cg4_A 83 AIVMLTAKNAPDAKMIGLQEYVVDYIT----------KPFDNEDLIEKTTFFMGF 127 (142)
T ss_dssp EEEEEECTTCCCCSSTTGGGGEEEEEE----------SSCCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHhcCccEEEe----------CCCCHHHHHHHHHHHHHH
Confidence 66653 322 234455567778876 899999999999998874
No 85
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=58.95 E-value=66 Score=27.11 Aligned_cols=111 Identities=14% Similarity=0.121 Sum_probs=62.4
Q ss_pred CcEEEEEeCCCchhHHHHHHHHHHCCCceEEecccChHHHHHHHHH---ccEEEeCCCC-CCCcHHHHHHHHc---CCce
Q 007247 431 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAG---ADFILIPSRF-EPCGLIQLHAMRY---GTVP 503 (611)
Q Consensus 431 ~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~i~~~---aDv~l~pS~~-E~~gl~~lEAma~---G~Pv 503 (611)
..+++|+.+.+ ...+.++.+....++.......-+.......+.. .|++++-... +.-|+.+++.+.. .+|+
T Consensus 3 ~~~iLivdd~~-~~~~~l~~~L~~~~g~~~v~~~~~~~~a~~~l~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~i 81 (154)
T 2qsj_A 3 LTVVLIVDDHH-LIRAGAKNLLEGAFSGMRVEGAETVSDALAFLEADNTVDLILLDVNLPDAEAIDGLVRLKRFDPSNAV 81 (154)
T ss_dssp CEEEEEECSCH-HHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHTTCCCSEEEECC------CHHHHHHHHHHCTTSEE
T ss_pred ccEEEEEcCCH-HHHHHHHHHHHhCCCceEEEEecCHHHHHHHHhccCCCCEEEEeCCCCCCchHHHHHHHHHhCCCCeE
Confidence 35677777554 3455555555444221111222244444445544 6888876544 3356777776653 6777
Q ss_pred EEcCCcc----cccceecCcceEEecccccccccCCccCHHHHHHHHHHHHHh
Q 007247 504 IVASTGG----LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (611)
Q Consensus 504 I~s~~gg----~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~~la~~i~~ll~~ 552 (611)
|+-.... ..+.+..|..+++. .|.+.+++.+.|..++..
T Consensus 82 i~ls~~~~~~~~~~~~~~g~~~~l~----------kp~~~~~L~~~l~~~~~~ 124 (154)
T 2qsj_A 82 ALISGETDHELIRAALEAGADGFIP----------KSADPQVLIHAVSLILEG 124 (154)
T ss_dssp EEC-----CHHHHHHHHTTCCBBCC----------TTSCHHHHHHHHHHHHTT
T ss_pred EEEeCCCCHHHHHHHHHccCCEEEe----------CCCCHHHHHHHHHHHHcC
Confidence 7654322 23344457777865 889999999999999876
No 86
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=58.61 E-value=76 Score=26.09 Aligned_cols=111 Identities=14% Similarity=0.177 Sum_probs=66.5
Q ss_pred CcEEEEEeCCCchhHHHHHHHHHH-CCCceEEecccChHHHHHHHH--HccEEEeCCCC-CCCcHHHHHHHHc-----CC
Q 007247 431 NVQIIVLGTGKKPMEKQLEQLEIL-YPEKARGVAKFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMRY-----GT 501 (611)
Q Consensus 431 ~~~lvivG~g~~~~~~~l~~l~~~-~~~~v~~~~~~~~~~~~~i~~--~aDv~l~pS~~-E~~gl~~lEAma~-----G~ 501 (611)
..+++|+.+.+ ...+.+..+... .+-.+.. ..-+.+.....+. ..|++++-... +.-|+.+++.+.. .+
T Consensus 8 ~~~iLivdd~~-~~~~~l~~~L~~~~~~~~v~-~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~ 85 (143)
T 3cnb_A 8 DFSILIIEDDK-EFADMLTQFLENLFPYAKIK-IAYNPFDAGDLLHTVKPDVVMLDLMMVGMDGFSICHRIKSTPATANI 85 (143)
T ss_dssp -CEEEEECSCH-HHHHHHHHHHHHHCTTCEEE-EECSHHHHHHHHHHTCCSEEEEETTCTTSCHHHHHHHHHTSTTTTTS
T ss_pred CceEEEEECCH-HHHHHHHHHHHhccCccEEE-EECCHHHHHHHHHhcCCCEEEEecccCCCcHHHHHHHHHhCccccCC
Confidence 56777777654 344555555444 4433111 1223333333443 36888876554 4467778887765 56
Q ss_pred ceEEc-CCcc---cccceecCcceEEecccccccccCCccCHHHHHHHHHHHHHhc
Q 007247 502 VPIVA-STGG---LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY 553 (611)
Q Consensus 502 PvI~s-~~gg---~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~~la~~i~~ll~~~ 553 (611)
|+|+- .... ..+.+..|..+++. .|.+.+++.+.|..+++..
T Consensus 86 ~ii~~s~~~~~~~~~~~~~~g~~~~l~----------kP~~~~~l~~~i~~~~~~~ 131 (143)
T 3cnb_A 86 IVIAMTGALTDDNVSRIVALGAETCFG----------KPLNFTLLEKTIKQLVEQK 131 (143)
T ss_dssp EEEEEESSCCHHHHHHHHHTTCSEEEE----------SSCCHHHHHHHHHHHHHTT
T ss_pred cEEEEeCCCCHHHHHHHHhcCCcEEEe----------CCCCHHHHHHHHHHHHHhh
Confidence 76654 3322 23344567788887 8999999999999998863
No 87
>3ty2_A 5'-nucleotidase SURE; surviVal protein, phosphatase, hydrolase; HET: MSE; 1.89A {Coxiella burnetii} SCOP: c.106.1.0
Probab=55.64 E-value=7.3 Score=37.83 Aligned_cols=41 Identities=22% Similarity=0.227 Sum_probs=28.6
Q ss_pred CCCceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEeecCCc
Q 007247 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQ 130 (611)
Q Consensus 82 ~~~MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~~~~~ 130 (611)
.++||||+.+.. .. ...-+..|.++|.+ +|+|+|++|...+
T Consensus 9 ~~~m~ILlTNDD-Gi------~apGi~aL~~~l~~-~~~V~VVAP~~~~ 49 (261)
T 3ty2_A 9 TPKLRLLLSNDD-GV------YAKGLAILAKTLAD-LGEVDVVAPDRNR 49 (261)
T ss_dssp --CCEEEEECSS-CT------TCHHHHHHHHHHTT-TSEEEEEEESSCC
T ss_pred CCCCeEEEEcCC-CC------CCHHHHHHHHHHHh-cCCEEEEecCCCC
Confidence 446999988865 11 22246678888877 8999999998543
No 88
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=55.40 E-value=92 Score=26.10 Aligned_cols=111 Identities=9% Similarity=0.065 Sum_probs=65.9
Q ss_pred CcEEEEEeCCCchhHHHHHHHHHHCCCceEEecccChHHHHHHHH---------HccEEEeCCCC-CCCcHHHHHHHHc-
Q 007247 431 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA---------GADFILIPSRF-EPCGLIQLHAMRY- 499 (611)
Q Consensus 431 ~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~i~~---------~aDv~l~pS~~-E~~gl~~lEAma~- 499 (611)
..+++|+.+.+ ...+.++.+....+........-+....-..+. ..|++++-... +.-|+-+++.+..
T Consensus 8 ~~~ILivdd~~-~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~~~~~~~~dlillD~~lp~~~g~~l~~~l~~~ 86 (149)
T 1i3c_A 8 PKVILLVEDSK-ADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGEYENSPRPNLILLDLNLPKKDGREVLAEIKQN 86 (149)
T ss_dssp CEEEEEECCCH-HHHHHHHHHHHSCCSCEEEEEECSHHHHHHHHTTCGGGTTCCCCSEEEECSCCSSSCHHHHHHHHHHC
T ss_pred CCeEEEEECCH-HHHHHHHHHHHhcCCCccEEEeCCHHHHHHHHHhccccccCCCCCEEEEeCCCCCCcHHHHHHHHHhC
Confidence 46677777543 355555555554432112222223444434554 36888876544 3457777877753
Q ss_pred ----CCceEEc-CCcc---cccceecCcceEEecccccccccCCccCHHHHHHHHHHHHHh
Q 007247 500 ----GTVPIVA-STGG---LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (611)
Q Consensus 500 ----G~PvI~s-~~gg---~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~~la~~i~~ll~~ 552 (611)
.+|+|.- .... ..+.++.|..+++. .|.+.+++.+.|+.++..
T Consensus 87 ~~~~~~piiils~~~~~~~~~~~~~~ga~~~l~----------KP~~~~~L~~~i~~~~~~ 137 (149)
T 1i3c_A 87 PDLKRIPVVVLTTSHNEDDVIASYELHVNCYLT----------KSRNLKDLFKMVQGIESF 137 (149)
T ss_dssp TTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEE----------CCSSHHHHHHHHHHHHHH
T ss_pred cCcCCCeEEEEECCCChHHHHHHHHcCCcEEEE----------CCCCHHHHHHHHHHHHHH
Confidence 4676654 3322 23344567889987 899999999999887653
No 89
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=55.22 E-value=92 Score=26.42 Aligned_cols=108 Identities=18% Similarity=0.155 Sum_probs=62.1
Q ss_pred cEEEEEeCCCchhHHHHHHHHHHCCCceEEecccChHHHHHHHH----HccEEEeCCCC-CCCcHHHHHHHHc---CCce
Q 007247 432 VQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA----GADFILIPSRF-EPCGLIQLHAMRY---GTVP 503 (611)
Q Consensus 432 ~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~i~~----~aDv~l~pS~~-E~~gl~~lEAma~---G~Pv 503 (611)
.+++|+.+.. ...+.++.+....+-.+.. ..-+...+...+. ..|++++-... +.-|+.+++.+.. .+|+
T Consensus 37 ~~Ilivdd~~-~~~~~l~~~L~~~g~~v~~-~~~~~~~al~~l~~~~~~~dliilD~~l~~~~g~~~~~~lr~~~~~~~i 114 (157)
T 3hzh_A 37 FNVLIVDDSV-FTVKQLTQIFTSEGFNIID-TAADGEEAVIKYKNHYPNIDIVTLXITMPKMDGITCLSNIMEFDKNARV 114 (157)
T ss_dssp CEEEEECSCH-HHHHHHHHHHHHTTCEEEE-EESSHHHHHHHHHHHGGGCCEEEECSSCSSSCHHHHHHHHHHHCTTCCE
T ss_pred eEEEEEeCCH-HHHHHHHHHHHhCCCeEEE-EECCHHHHHHHHHhcCCCCCEEEEeccCCCccHHHHHHHHHhhCCCCcE
Confidence 5666666543 3444555544444422221 2223333333333 34888876554 4457777766643 5676
Q ss_pred EEcCCcc----cccceecCcceEEecccccccccCCccCHHHHHHHHHHHHH
Q 007247 504 IVASTGG----LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALA 551 (611)
Q Consensus 504 I~s~~gg----~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~~la~~i~~ll~ 551 (611)
|+-.... ..+.+..|..+++. .|-+.+++.+.|.++++
T Consensus 115 i~ls~~~~~~~~~~~~~~g~~~~l~----------KP~~~~~l~~~i~~~l~ 156 (157)
T 3hzh_A 115 IMISALGKEQLVKDCLIKGAKTFIV----------KPLDRAKVLQRVMSVFV 156 (157)
T ss_dssp EEEESCCCHHHHHHHHHTTCSEEEE----------SSCCHHHHHHHHHHTTC
T ss_pred EEEeccCcHHHHHHHHHcCCCEEEe----------CCCCHHHHHHHHHHHhc
Confidence 6643322 23344567888887 89999999999988764
No 90
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Probab=54.95 E-value=9 Score=34.77 Aligned_cols=35 Identities=20% Similarity=0.180 Sum_probs=25.2
Q ss_pred CCceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEeec
Q 007247 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (611)
Q Consensus 83 ~~MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~~ 127 (611)
+.|+|++++. +|++| ..+++.|.++||+|.+++..
T Consensus 2 ~~~~ilVtGa-------tG~iG---~~l~~~l~~~g~~V~~~~r~ 36 (206)
T 1hdo_A 2 AVKKIAIFGA-------TGQTG---LTTLAQAVQAGYEVTVLVRD 36 (206)
T ss_dssp CCCEEEEEST-------TSHHH---HHHHHHHHHTTCEEEEEESC
T ss_pred CCCEEEEEcC-------CcHHH---HHHHHHHHHCCCeEEEEEeC
Confidence 3477776553 35555 45788899999999998755
No 91
>3mc3_A DSRE/DSRF-like family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.49A {Sulfolobus solfataricus}
Probab=54.42 E-value=13 Score=32.01 Aligned_cols=42 Identities=14% Similarity=-0.137 Sum_probs=31.5
Q ss_pred CCceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEeec
Q 007247 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (611)
Q Consensus 83 ~~MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~~ 127 (611)
+.+|++||... .|+ ...-......+|...++.||+|.|+...
T Consensus 14 ~~~kl~ii~~s-gP~--~~~~~~~al~lA~~A~a~g~eV~vFf~~ 55 (134)
T 3mc3_A 14 QXXXILIVVTH-GPE--DLDRTYAPLFMASISASMEYETSVFFMI 55 (134)
T ss_dssp CCCEEEEEECC-CGG--GTHHHHHHHHHHHHHHHTTCEEEEEECT
T ss_pred ccceEEEEEcc-CCC--CHHHHHHHHHHHHHHHHCCCCEEEEEEe
Confidence 35789999876 565 3445556677888888999999988755
No 92
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=54.13 E-value=87 Score=25.43 Aligned_cols=109 Identities=14% Similarity=0.124 Sum_probs=64.3
Q ss_pred cEEEEEeCCCchhHHHHHHHHHHCCCceEEecccChHHHHHHH--HHccEEEeCCCC-CCCcHHHHHHHHc---CCceEE
Q 007247 432 VQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMII--AGADFILIPSRF-EPCGLIQLHAMRY---GTVPIV 505 (611)
Q Consensus 432 ~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~i~--~~aDv~l~pS~~-E~~gl~~lEAma~---G~PvI~ 505 (611)
++++|+.+.. ...+.++.+....+-.+..... +.+.....+ ...|++++-... +.-|+.+++.+.. .+|+|.
T Consensus 2 ~~ilivdd~~-~~~~~l~~~L~~~g~~v~~~~~-~~~~a~~~~~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ii~ 79 (134)
T 3f6c_A 2 LNAIIIDDHP-LAIAAIRNLLIKNDIEILAELT-EGGSAVQRVETLKPDIVIIDVDIPGVNGIQVLETLRKRQYSGIIII 79 (134)
T ss_dssp EEEEEECCCH-HHHHHHHHHHHHTTEEEEEEES-SSTTHHHHHHHHCCSEEEEETTCSSSCHHHHHHHHHHTTCCSEEEE
T ss_pred eEEEEEcCCH-HHHHHHHHHHhhCCcEEEEEcC-CHHHHHHHHHhcCCCEEEEecCCCCCChHHHHHHHHhcCCCCeEEE
Confidence 4667777544 3555566655555422321221 222222223 346888876554 4567777777654 456655
Q ss_pred cC-Cc---ccccceecCcceEEecccccccccCCccCHHHHHHHHHHHHHh
Q 007247 506 AS-TG---GLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (611)
Q Consensus 506 s~-~g---g~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~~la~~i~~ll~~ 552 (611)
-. .. ...+.+..|..+++. .|-+.+++.++|..+++.
T Consensus 80 ~s~~~~~~~~~~~~~~g~~~~l~----------kp~~~~~l~~~i~~~~~~ 120 (134)
T 3f6c_A 80 VSAKNDHFYGKHCADAGANGFVS----------KKEGMNNIIAAIEAAKNG 120 (134)
T ss_dssp EECC---CTHHHHHHTTCSEEEE----------GGGCTHHHHHHHHHHHTT
T ss_pred EeCCCChHHHHHHHHhCCCEEEe----------CCCCHHHHHHHHHHHHCC
Confidence 33 22 233344567888987 889999999999999875
No 93
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=54.10 E-value=97 Score=25.96 Aligned_cols=111 Identities=17% Similarity=0.136 Sum_probs=64.6
Q ss_pred CCcEEEEEeCCCchhHHHHHHHHHHCCCceEEe-cccChHHHHHHH--HHccEEEeCCCC-CCCcHHHHHHHHc---CCc
Q 007247 430 ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGV-AKFNIPLAHMII--AGADFILIPSRF-EPCGLIQLHAMRY---GTV 502 (611)
Q Consensus 430 ~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~-~~~~~~~~~~i~--~~aDv~l~pS~~-E~~gl~~lEAma~---G~P 502 (611)
...+++|+.+.. ...+.++.+....+. .... ..-+...+...+ ...|++++-... +.-|+.+++.+.. .+|
T Consensus 14 ~~~~iLivdd~~-~~~~~l~~~L~~~~~-~~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ 91 (152)
T 3eul_A 14 EKVRVVVGDDHP-LFREGVVRALSLSGS-VNVVGEADDGAAALELIKAHLPDVALLDYRMPGMDGAQVAAAVRSYELPTR 91 (152)
T ss_dssp CCEEEEEECSSH-HHHHHHHHHHHHHSS-EEEEEEESSHHHHHHHHHHHCCSEEEEETTCSSSCHHHHHHHHHHTTCSCE
T ss_pred ceEEEEEEcCCH-HHHHHHHHHHhhCCC-eEEEEEeCCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCe
Confidence 356677777543 244444444444332 1111 112333333333 346887775543 4557777777654 566
Q ss_pred eEEcC-Ccc---cccceecCcceEEecccccccccCCccCHHHHHHHHHHHHHh
Q 007247 503 PIVAS-TGG---LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (611)
Q Consensus 503 vI~s~-~gg---~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~~la~~i~~ll~~ 552 (611)
+|+-. ... ..+.+..|..+++. .|.+.+++.++|.+++..
T Consensus 92 ii~~s~~~~~~~~~~~~~~g~~~~l~----------Kp~~~~~l~~~i~~~~~~ 135 (152)
T 3eul_A 92 VLLISAHDEPAIVYQALQQGAAGFLL----------KDSTRTEIVKAVLDCAKG 135 (152)
T ss_dssp EEEEESCCCHHHHHHHHHTTCSEEEE----------TTCCHHHHHHHHHHHHHC
T ss_pred EEEEEccCCHHHHHHHHHcCCCEEEe----------cCCCHHHHHHHHHHHHcC
Confidence 66543 222 23445567889987 899999999999999986
No 94
>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}
Probab=53.65 E-value=9.5 Score=37.74 Aligned_cols=43 Identities=19% Similarity=0.060 Sum_probs=30.7
Q ss_pred HHHHHHHccEEEeCCCCCCCcHHHHHHHHcCCceEEcCCcccc
Q 007247 470 AHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLV 512 (611)
Q Consensus 470 ~~~i~~~aDv~l~pS~~E~~gl~~lEAma~G~PvI~s~~gg~~ 512 (611)
+.+++..+|+++--+..+..--.+..++..|+|+|+..+|...
T Consensus 82 l~~ll~~aDVvIDFT~p~a~~~~~~~~l~~Gv~vViGTTG~~~ 124 (288)
T 3ijp_A 82 PESAFSNTEGILDFSQPQASVLYANYAAQKSLIHIIGTTGFSK 124 (288)
T ss_dssp HHHHTTSCSEEEECSCHHHHHHHHHHHHHHTCEEEECCCCCCH
T ss_pred HHHHhcCCCEEEEcCCHHHHHHHHHHHHHcCCCEEEECCCCCH
Confidence 4457789999996665443333356688999999998887543
No 95
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase, N-glucosyltransferase, UDP-glucose- dependent, plant glycosyltransferase; HET: UDP; 1.45A {Arabidopsis thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Probab=51.77 E-value=8.7 Score=40.93 Aligned_cols=40 Identities=15% Similarity=0.044 Sum_probs=29.6
Q ss_pred CCceEEEEeeeecCccccccHHHHhccchHHHHhC-CCeEEEEeecC
Q 007247 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAAN-GHRVMTIAPRY 128 (611)
Q Consensus 83 ~~MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~-Gh~V~vit~~~ 128 (611)
++|+|+++.. | ..|--.-+..|++.|+++ ||+|+++++..
T Consensus 5 ~~~~vl~~p~---p---~~GHv~P~l~La~~L~~r~Gh~Vt~~t~~~ 45 (480)
T 2vch_A 5 KTPHVAIIPS---P---GMGHLIPLVEFAKRLVHLHGLTVTFVIAGE 45 (480)
T ss_dssp -CCEEEEECC---S---CHHHHHHHHHHHHHHHHHHCCEEEEEECCS
T ss_pred CCcEEEEecC---c---chhHHHHHHHHHHHHHhCCCCEEEEEECCC
Confidence 4578888863 3 234444677899999998 99999998763
No 96
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=51.57 E-value=14 Score=33.77 Aligned_cols=41 Identities=10% Similarity=0.068 Sum_probs=32.1
Q ss_pred CCCceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEeec
Q 007247 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (611)
Q Consensus 82 ~~~MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~~ 127 (611)
|+.|||++|... | .|-...+...+++.+.+.|++|.++...
T Consensus 3 M~M~kilii~~S--~---~g~T~~la~~i~~~l~~~g~~v~~~~l~ 43 (200)
T 2a5l_A 3 MSSPYILVLYYS--R---HGATAEMARQIARGVEQGGFEARVRTVP 43 (200)
T ss_dssp --CCEEEEEECC--S---SSHHHHHHHHHHHHHHHTTCEEEEEBCC
T ss_pred CCcceEEEEEeC--C---CChHHHHHHHHHHHHhhCCCEEEEEEhh
Confidence 334699999864 4 5778888889999999999999988654
No 97
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=51.56 E-value=1e+02 Score=25.37 Aligned_cols=107 Identities=11% Similarity=0.084 Sum_probs=60.3
Q ss_pred cEEEEEeCCCchhHHHHHHHHHHCCCceEEecccChHHHHHHH--HHccEEEeCCCC-CCCcHHHHHHHH-----cCCce
Q 007247 432 VQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMII--AGADFILIPSRF-EPCGLIQLHAMR-----YGTVP 503 (611)
Q Consensus 432 ~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~i~--~~aDv~l~pS~~-E~~gl~~lEAma-----~G~Pv 503 (611)
.+++|+.+.. ...+.++++.... ..+. ..-+...+...+ ...|++++-... +.-|+.+++.+. ..+|+
T Consensus 4 ~~iLivdd~~-~~~~~l~~~l~~~-~~v~--~~~~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~i 79 (140)
T 3n53_A 4 KKILIIDQQD-FSRIELKNFLDSE-YLVI--ESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPL 79 (140)
T ss_dssp CEEEEECSCH-HHHHHHHHHHTTT-SEEE--EESSHHHHHHHHHHHCCSEEEEETTC------CHHHHHHTSTTCTTCCE
T ss_pred CEEEEEeCCH-HHHHHHHHHHHhc-ceEE--EeCCHHHHHHHHhcCCCCEEEEeCCCCCCcHHHHHHHHHcCcccCCCCE
Confidence 4566666543 3444455444433 2222 222333333333 345888876544 345666666665 46777
Q ss_pred EEcCCc----ccccceecCcceEEecccccccccCCccCHHHHHHHHHHHHHh
Q 007247 504 IVASTG----GLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (611)
Q Consensus 504 I~s~~g----g~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~~la~~i~~ll~~ 552 (611)
|+-... ...+.+..|..+++. .|.+.+++...|..++..
T Consensus 80 i~~s~~~~~~~~~~~~~~g~~~~l~----------KP~~~~~l~~~i~~~~~~ 122 (140)
T 3n53_A 80 ILLFSSEHKEAIVNGLHSGADDYLT----------KPFNRNDLLSRIEIHLRT 122 (140)
T ss_dssp EEEECC----CTTTTTTCCCSEEEE----------SSCCHHHHHHHHHHHHHH
T ss_pred EEEecCCCHHHHHHHHhcCCCeeee----------CCCCHHHHHHHHHHHHhh
Confidence 654322 234455567788887 899999999999999875
No 98
>2hy5_B Intracellular sulfur oxidation protein DSRF; DSRE, DSRF, sulfur, structural genomics, PSI, protein initiative, berkeley structural genomics center, BSGC, TRAN; 1.72A {Allochromatium vinosum} SCOP: c.114.1.1 PDB: 2hyb_B
Probab=50.84 E-value=12 Score=32.46 Aligned_cols=42 Identities=12% Similarity=-0.001 Sum_probs=30.1
Q ss_pred CCc-eEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEeec
Q 007247 83 VGL-NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (611)
Q Consensus 83 ~~M-kIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~~ 127 (611)
..| |++|+... +|+ ..-...-...++.++++.||+|.|+--.
T Consensus 3 ~~Mkk~~ivv~~-~P~--g~~~~~~al~~a~a~~a~~~~v~Vff~~ 45 (136)
T 2hy5_B 3 EVVKKFMYLNRK-APY--GTIYAWEALEVVLIGAAFDQDVCVLFLD 45 (136)
T ss_dssp --CCEEEEEECS-CTT--TSSHHHHHHHHHHHHGGGCCEEEEEECG
T ss_pred cchhEEEEEEeC-CCC--CcHHHHHHHHHHHHHHhCCCCEEEEEEh
Confidence 347 49999875 676 2235555777899999999999988744
No 99
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=50.28 E-value=96 Score=24.91 Aligned_cols=109 Identities=13% Similarity=0.202 Sum_probs=64.3
Q ss_pred CcEEEEEeCCCchhHHHHHHHHHHCCC-ceEEecccChHHHHHHHH--HccEEEeCCCC-CCCcHHHHHHHHc-----CC
Q 007247 431 NVQIIVLGTGKKPMEKQLEQLEILYPE-KARGVAKFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMRY-----GT 501 (611)
Q Consensus 431 ~~~lvivG~g~~~~~~~l~~l~~~~~~-~v~~~~~~~~~~~~~i~~--~aDv~l~pS~~-E~~gl~~lEAma~-----G~ 501 (611)
..+++|+.+.+ ...+.++.+....+- .+.. .-+....-..+. ..|++++-... +.-|+.+++.+.. .+
T Consensus 4 ~~~ilivdd~~-~~~~~l~~~l~~~~~~~v~~--~~~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~l~~~l~~~~~~~~~ 80 (128)
T 1jbe_A 4 ELKFLVVDDFS-TMRRIVRNLLKELGFNNVEE--AEDGVDALNKLQAGGYGFVISDWNMPNMDGLELLKTIRAXXAMSAL 80 (128)
T ss_dssp TCCEEEECSCH-HHHHHHHHHHHHTTCCCEEE--ESSHHHHHHHHTTCCCCEEEEESCCSSSCHHHHHHHHHC--CCTTC
T ss_pred ccEEEEECCCH-HHHHHHHHHHHHcCCcEEEe--eCCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhcccCCC
Confidence 45677776544 345555555544432 1221 123333333443 35888775544 3457888888764 46
Q ss_pred ceEEcC-Ccc---cccceecCcceEEecccccccccCCccCHHHHHHHHHHHHHh
Q 007247 502 VPIVAS-TGG---LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (611)
Q Consensus 502 PvI~s~-~gg---~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~~la~~i~~ll~~ 552 (611)
|+|.-. ... ..+.++.|..+++. .|-+.+++.+.|.++++.
T Consensus 81 ~ii~~s~~~~~~~~~~~~~~ga~~~l~----------KP~~~~~l~~~i~~~~~~ 125 (128)
T 1jbe_A 81 PVLMVTAEAKKENIIAAAQAGASGYVV----------KPFTAATLEEKLNKIFEK 125 (128)
T ss_dssp CEEEEESSCCHHHHHHHHHTTCSEEEE----------SSCCHHHHHHHHHHHHHH
T ss_pred cEEEEecCccHHHHHHHHHhCcCceee----------cCCCHHHHHHHHHHHHHH
Confidence 666543 222 23345567788887 899999999999988763
No 100
>1jx7_A Hypothetical protein YCHN; NEW fold, hexamer, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 2.80A {Escherichia coli} SCOP: c.114.1.1
Probab=50.17 E-value=14 Score=30.55 Aligned_cols=40 Identities=18% Similarity=0.061 Sum_probs=29.7
Q ss_pred ceEEEEeeeecCccccccHHHHhccchHHHHhC-CC-eEEEEeec
Q 007247 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAAN-GH-RVMTIAPR 127 (611)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~-Gh-~V~vit~~ 127 (611)
||++|+... .|+ ..........++.++.+. || +|.|+...
T Consensus 2 ~k~~ii~~~-~p~--~~~~~~~al~~a~~~~~~~g~~~v~vff~~ 43 (117)
T 1jx7_A 2 QKIVIVANG-APY--GSESLFNSLRLAIALREQESNLDLRLFLMS 43 (117)
T ss_dssp CEEEEEECC-CTT--TCSHHHHHHHHHHHHHHHCTTCEEEEEECG
T ss_pred cEEEEEEcC-CCC--CcHHHHHHHHHHHHHHhcCCCccEEEEEEc
Confidence 488888876 565 334455577888999888 99 99888754
No 101
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}
Probab=49.83 E-value=10 Score=34.89 Aligned_cols=33 Identities=27% Similarity=0.463 Sum_probs=24.6
Q ss_pred ceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEeec
Q 007247 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (611)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~~ 127 (611)
|||++++. +|++| ..+++.|.++||+|.+++.+
T Consensus 1 MkvlVtGa-------tG~iG---~~l~~~L~~~g~~V~~~~R~ 33 (221)
T 3ew7_A 1 MKIGIIGA-------TGRAG---SRILEEAKNRGHEVTAIVRN 33 (221)
T ss_dssp CEEEEETT-------TSHHH---HHHHHHHHHTTCEEEEEESC
T ss_pred CeEEEEcC-------CchhH---HHHHHHHHhCCCEEEEEEcC
Confidence 77766653 36666 45788899999999999765
No 102
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=49.36 E-value=1e+02 Score=25.68 Aligned_cols=109 Identities=17% Similarity=0.112 Sum_probs=62.3
Q ss_pred CcEEEEEeCCCchhHHHHHHHHHHCCCceEEecccChHHHHHHHH--HccEEEeCCCC-CCCcHHHHHHHH-------cC
Q 007247 431 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMR-------YG 500 (611)
Q Consensus 431 ~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~i~~--~aDv~l~pS~~-E~~gl~~lEAma-------~G 500 (611)
..+++|+.+.. ...+.++.+....+..+.. .-+.+..-..+. ..|++++-... +.-|+-+++.+. ..
T Consensus 14 ~~~iLivdd~~-~~~~~l~~~L~~~g~~v~~--~~~~~~al~~~~~~~~dlvl~D~~mp~~~g~~~~~~lr~~~~~~~~~ 90 (143)
T 3m6m_D 14 SMRMLVADDHE-ANRMVLQRLLEKAGHKVLC--VNGAEQVLDAMAEEDYDAVIVDLHMPGMNGLDMLKQLRVMQASGMRY 90 (143)
T ss_dssp -CEEEEECSSH-HHHHHHHHHHHC--CEEEE--ESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHHHHTTCCC
T ss_pred cceEEEEeCCH-HHHHHHHHHHHHcCCeEEE--eCCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhchhccCCC
Confidence 46777777543 3445555554444322322 223333333443 36888875543 445777777774 13
Q ss_pred CceEEcCCcccc----cceecCcceEEecccccccccCCccCHHHHHHHHHHHHHh
Q 007247 501 TVPIVASTGGLV----DTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (611)
Q Consensus 501 ~PvI~s~~gg~~----e~v~~g~~G~l~~~~~~~~~~v~~~d~~~la~~i~~ll~~ 552 (611)
+|+|+.....-. +....|..+|+. .|-+.+++.++|.++...
T Consensus 91 ~pii~~s~~~~~~~~~~~~~~Ga~~~l~----------KP~~~~~L~~~l~~~~~~ 136 (143)
T 3m6m_D 91 TPVVVLSADVTPEAIRACEQAGARAFLA----------KPVVAAKLLDTLADLAVS 136 (143)
T ss_dssp CCEEEEESCCCHHHHHHHHHTTCSEEEE----------SSCCHHHHHHHHHHHC--
T ss_pred CeEEEEeCCCCHHHHHHHHHcChhheee----------CCCCHHHHHHHHHHHHHh
Confidence 677665433322 334457788987 999999999999988654
No 103
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=49.13 E-value=1.1e+02 Score=25.18 Aligned_cols=109 Identities=16% Similarity=0.128 Sum_probs=67.6
Q ss_pred CcEEEEEeCCCchhHHHHHHHHHHCCCceEEecccChHHHHHHHH---HccEEEeCCCC-C-CCcHHHHHHHH--cCCce
Q 007247 431 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA---GADFILIPSRF-E-PCGLIQLHAMR--YGTVP 503 (611)
Q Consensus 431 ~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~i~~---~aDv~l~pS~~-E-~~gl~~lEAma--~G~Pv 503 (611)
+.+++|+.+.+ ...+.++.+....+-.+. ...+.......+. ..|++++-... + .-|+.+++.+. ..+|+
T Consensus 5 ~~~ilivdd~~-~~~~~l~~~L~~~g~~v~--~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~i 81 (140)
T 3h5i_A 5 DKKILIVEDSK-FQAKTIANILNKYGYTVE--IALTGEAAVEKVSGGWYPDLILMDIELGEGMDGVQTALAIQQISELPV 81 (140)
T ss_dssp -CEEEEECSCH-HHHHHHHHHHHHTTCEEE--EESSHHHHHHHHHTTCCCSEEEEESSCSSSCCHHHHHHHHHHHCCCCE
T ss_pred CcEEEEEeCCH-HHHHHHHHHHHHcCCEEE--EecChHHHHHHHhcCCCCCEEEEeccCCCCCCHHHHHHHHHhCCCCCE
Confidence 45677777644 345555555555543232 2334444444553 35888876654 4 56777777665 36777
Q ss_pred EEcCCcc----cccceecCcceEEecccccccccCCccCHHHHHHHHHHHHHh
Q 007247 504 IVASTGG----LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (611)
Q Consensus 504 I~s~~gg----~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~~la~~i~~ll~~ 552 (611)
|+-.... ..+.+..|..+++. .|.+.+++...|.++++.
T Consensus 82 i~ls~~~~~~~~~~~~~~g~~~~l~----------KP~~~~~l~~~i~~~l~~ 124 (140)
T 3h5i_A 82 VFLTAHTEPAVVEKIRSVTAYGYVM----------KSATEQVLITIVEMALRL 124 (140)
T ss_dssp EEEESSSSCCCCGGGGGSCEEEEEE----------TTCCHHHHHHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHhCCCcEEEe----------CCCCHHHHHHHHHHHHHH
Confidence 6643222 33445567788887 899999999999999875
No 104
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=48.84 E-value=1.1e+02 Score=24.98 Aligned_cols=111 Identities=12% Similarity=0.071 Sum_probs=64.7
Q ss_pred CCcEEEEEeCCCchhHHHHHHHHHHCCCceEEecccChHHHHHHHH--HccEEEeCCCC--CCCcHHHHHHHH--cCCce
Q 007247 430 ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRF--EPCGLIQLHAMR--YGTVP 503 (611)
Q Consensus 430 ~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~i~~--~aDv~l~pS~~--E~~gl~~lEAma--~G~Pv 503 (611)
...+++|+.+.+ ...+.++......+-.+.. ..-+.+.....+. ..|++++-... +.-|+.+++.+. ..+|+
T Consensus 8 ~~~~iLivdd~~-~~~~~l~~~L~~~g~~v~~-~~~~~~~a~~~~~~~~~dlii~d~~~~~~~~g~~~~~~l~~~~~~~i 85 (140)
T 3cg0_A 8 DLPGVLIVEDGR-LAAATLRIQLESLGYDVLG-VFDNGEEAVRCAPDLRPDIALVDIMLCGALDGVETAARLAAGCNLPI 85 (140)
T ss_dssp CCCEEEEECCBH-HHHHHHHHHHHHHTCEEEE-EESSHHHHHHHHHHHCCSEEEEESSCCSSSCHHHHHHHHHHHSCCCE
T ss_pred CCceEEEEECCH-HHHHHHHHHHHHCCCeeEE-EECCHHHHHHHHHhCCCCEEEEecCCCCCCCHHHHHHHHHhCCCCCE
Confidence 356777777644 3444444444443322321 1223333333333 36888876544 245666666655 47887
Q ss_pred EEcCC-cc---cccceecCcceEEecccccccccCCccCHHHHHHHHHHHHHh
Q 007247 504 IVAST-GG---LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (611)
Q Consensus 504 I~s~~-gg---~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~~la~~i~~ll~~ 552 (611)
|+-.. .. ..+.+..|..+++. .|.+.+++...|.++++.
T Consensus 86 i~ls~~~~~~~~~~~~~~g~~~~l~----------kp~~~~~l~~~i~~~~~~ 128 (140)
T 3cg0_A 86 IFITSSQDVETFQRAKRVNPFGYLA----------KPVAADTLHRSIEMAIHK 128 (140)
T ss_dssp EEEECCCCHHHHHHHHTTCCSEEEE----------ESCCHHHHHHHHHHHHHH
T ss_pred EEEecCCCHHHHHHHHhcCCCEEEe----------CCCCHHHHHHHHHHHHhc
Confidence 76432 22 22344567788886 899999999999999875
No 105
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=48.28 E-value=74 Score=26.09 Aligned_cols=108 Identities=18% Similarity=0.192 Sum_probs=63.2
Q ss_pred cEEEEEeCCCchhHHHHHHHHHHCCCceEEecccChHHHHHHHHH--ccEEEeCCCC------CCCcHHHHHHHH---cC
Q 007247 432 VQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAG--ADFILIPSRF------EPCGLIQLHAMR---YG 500 (611)
Q Consensus 432 ~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~i~~~--aDv~l~pS~~------E~~gl~~lEAma---~G 500 (611)
.+++|+.+.. ...+.++......+-.+. ..-+.......+.. .|++++-... +.-|+.+++.+. ..
T Consensus 4 ~~ilivdd~~-~~~~~l~~~L~~~g~~v~--~~~~~~~a~~~l~~~~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~~~~ 80 (140)
T 2qr3_A 4 GTIIIVDDNK-GVLTAVQLLLKNHFSKVI--TLSSPVSLSTVLREENPEVVLLDMNFTSGINNGNEGLFWLHEIKRQYRD 80 (140)
T ss_dssp CEEEEECSCH-HHHHHHHHHHTTTSSEEE--EECCHHHHHHHHHHSCEEEEEEETTTTC-----CCHHHHHHHHHHHCTT
T ss_pred ceEEEEeCCH-HHHHHHHHHHHhCCcEEE--EeCCHHHHHHHHHcCCCCEEEEeCCcCCCCCCCccHHHHHHHHHhhCcC
Confidence 4667776543 344555555444432232 22233444344443 5777765443 335666666664 36
Q ss_pred CceEEcCCcc----cccceecCcceEEecccccccccCCccCHHHHHHHHHHHHHh
Q 007247 501 TVPIVASTGG----LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (611)
Q Consensus 501 ~PvI~s~~gg----~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~~la~~i~~ll~~ 552 (611)
+|+|+-.... ..+.+..|..+++. .|.+.+++.+.|..++..
T Consensus 81 ~~ii~ls~~~~~~~~~~~~~~g~~~~l~----------kp~~~~~l~~~l~~~~~~ 126 (140)
T 2qr3_A 81 LPVVLFTAYADIDLAVRGIKEGASDFVV----------KPWDNQKLLETLLNAASQ 126 (140)
T ss_dssp CCEEEEEEGGGHHHHHHHHHTTCCEEEE----------ESCCHHHHHHHHHHHHTC
T ss_pred CCEEEEECCCCHHHHHHHHHcCchheee----------CCCCHHHHHHHHHHHHHh
Confidence 7776643222 23344567788887 899999999999999875
No 106
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}
Probab=48.26 E-value=11 Score=34.81 Aligned_cols=33 Identities=24% Similarity=0.515 Sum_probs=24.2
Q ss_pred ceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEeec
Q 007247 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (611)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~~ 127 (611)
|||++++. +|++| ..+++.|.++||+|.+++..
T Consensus 1 MkilVtGa-------tG~iG---~~l~~~L~~~g~~V~~~~R~ 33 (224)
T 3h2s_A 1 MKIAVLGA-------TGRAG---SAIVAEARRRGHEVLAVVRD 33 (224)
T ss_dssp CEEEEETT-------TSHHH---HHHHHHHHHTTCEEEEEESC
T ss_pred CEEEEEcC-------CCHHH---HHHHHHHHHCCCEEEEEEec
Confidence 67665553 35555 45788899999999999754
No 107
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=48.14 E-value=1.1e+02 Score=24.90 Aligned_cols=109 Identities=15% Similarity=0.156 Sum_probs=66.1
Q ss_pred CcEEEEEeCCCchhHHHHHHHHHHCCCceEEecccChHHHHHHHH--HccEEEeCCCC-CCCcHHHHHHHHc---CCceE
Q 007247 431 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMRY---GTVPI 504 (611)
Q Consensus 431 ~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~i~~--~aDv~l~pS~~-E~~gl~~lEAma~---G~PvI 504 (611)
..+++|+.+.. ...+.++.+.......+... -+...+...+. ..|++++-... +.-|+.+++.+.. .+|+|
T Consensus 7 ~~~ilivdd~~-~~~~~l~~~L~~~~~~v~~~--~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii 83 (137)
T 3hdg_A 7 ALKILIVEDDT-DAREWLSTIISNHFPEVWSA--GDGEEGERLFGLHAPDVIITDIRMPKLGGLEMLDRIKAGGAKPYVI 83 (137)
T ss_dssp CCCEEEECSCH-HHHHHHHHHHHTTCSCEEEE--SSHHHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHHTTCCCEEE
T ss_pred ccEEEEEeCCH-HHHHHHHHHHHhcCcEEEEE--CCHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEE
Confidence 46777777654 34445555544433223222 23333333333 46888876554 4567777776654 56777
Q ss_pred EcCCcc----cccceecCcceEEecccccccccCCccCHHHHHHHHHHHHHh
Q 007247 505 VASTGG----LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (611)
Q Consensus 505 ~s~~gg----~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~~la~~i~~ll~~ 552 (611)
+-.... ..+.+..|..+++. .|-+.+++.+.|.++++.
T Consensus 84 ~~s~~~~~~~~~~~~~~g~~~~l~----------kP~~~~~l~~~i~~~~~~ 125 (137)
T 3hdg_A 84 VISAFSEMKYFIKAIELGVHLFLP----------KPIEPGRLMETLEDFRHI 125 (137)
T ss_dssp ECCCCCCHHHHHHHHHHCCSEECC----------SSCCHHHHHHHHHHHHHH
T ss_pred EEecCcChHHHHHHHhCCcceeEc----------CCCCHHHHHHHHHHHHHH
Confidence 654332 23345567788875 899999999999999875
No 108
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=48.11 E-value=1.2e+02 Score=25.33 Aligned_cols=108 Identities=15% Similarity=0.205 Sum_probs=63.6
Q ss_pred CcEEEEEeCCCchhHHHHHHHHHHCCCceEEecccChHHHHHHHHH---ccEEEeCCCC-CCCcHHHHHHHHc---CCce
Q 007247 431 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAG---ADFILIPSRF-EPCGLIQLHAMRY---GTVP 503 (611)
Q Consensus 431 ~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~i~~~---aDv~l~pS~~-E~~gl~~lEAma~---G~Pv 503 (611)
..+++|+.+.. ...+.+..+... + ......-+.......+.. .|++++-... +.-|+.+++.+.. .+|+
T Consensus 4 ~~~ILivdd~~-~~~~~l~~~L~~-~--~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~i 79 (151)
T 3kcn_A 4 NERILLVDDDY-SLLNTLKRNLSF-D--FEVTTCESGPEALACIKKSDPFSVIMVDMRMPGMEGTEVIQKARLISPNSVY 79 (151)
T ss_dssp CCEEEEECSCH-HHHHHHHHHHTT-T--SEEEEESSHHHHHHHHHHSCCCSEEEEESCCSSSCHHHHHHHHHHHCSSCEE
T ss_pred CCeEEEEeCCH-HHHHHHHHHhcc-C--ceEEEeCCHHHHHHHHHcCCCCCEEEEeCCCCCCcHHHHHHHHHhcCCCcEE
Confidence 35677777654 234444444332 2 222222344444344443 3888875543 4567777776653 5666
Q ss_pred EEcC-Ccc---cccceecC-cceEEecccccccccCCccCHHHHHHHHHHHHHh
Q 007247 504 IVAS-TGG---LVDTVEEG-FTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (611)
Q Consensus 504 I~s~-~gg---~~e~v~~g-~~G~l~~~~~~~~~~v~~~d~~~la~~i~~ll~~ 552 (611)
|+-. ... ..+.+..| ..+++. .|-+.+++.++|..+++.
T Consensus 80 i~~s~~~~~~~~~~~~~~g~~~~~l~----------KP~~~~~L~~~i~~~l~~ 123 (151)
T 3kcn_A 80 LMLTGNQDLTTAMEAVNEGQVFRFLN----------KPCQMSDIKAAINAGIKQ 123 (151)
T ss_dssp EEEECGGGHHHHHHHHHHTCCSEEEE----------SSCCHHHHHHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHHcCCeeEEEc----------CCCCHHHHHHHHHHHHHH
Confidence 6543 222 23344556 678887 899999999999999985
No 109
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=47.28 E-value=1.2e+02 Score=24.97 Aligned_cols=107 Identities=17% Similarity=0.198 Sum_probs=62.0
Q ss_pred EEEEEeCCCchhHHHHHHHHHHCCCceEEecccChHHHHHHHH--HccEEEeCCCC-CCCcHHHHHHHH---cCCceEEc
Q 007247 433 QIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMR---YGTVPIVA 506 (611)
Q Consensus 433 ~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~i~~--~aDv~l~pS~~-E~~gl~~lEAma---~G~PvI~s 506 (611)
+++|+.+.+. ..+.++.+....+-.+. ..-+....-..+. ..|++++-... +.-|+.+++.+. ..+|+|.-
T Consensus 6 ~ILivdd~~~-~~~~l~~~L~~~g~~v~--~~~~~~~a~~~l~~~~~dlvllD~~l~~~~g~~l~~~l~~~~~~~~ii~l 82 (137)
T 3cfy_A 6 RVLLVEDSTS-LAILYKQYVKDEPYDIF--HVETGRDAIQFIERSKPQLIILDLKLPDMSGEDVLDWINQNDIPTSVIIA 82 (137)
T ss_dssp EEEEECSCTT-HHHHHHHHTTTSSSEEE--EESSHHHHHHHHHHHCCSEEEECSBCSSSBHHHHHHHHHHTTCCCEEEEE
T ss_pred eEEEEeCCHH-HHHHHHHHHHhcCceEE--EeCCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 5667766542 44455544443332222 2223333333333 46888875544 345777777665 35666654
Q ss_pred C-Ccc---cccceecCcceEEecccccccccCCccCHHHHHHHHHHHHHh
Q 007247 507 S-TGG---LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (611)
Q Consensus 507 ~-~gg---~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~~la~~i~~ll~~ 552 (611)
. ... ..+.+..|..+++. .|.+.+++...|..++..
T Consensus 83 s~~~~~~~~~~~~~~ga~~~l~----------KP~~~~~L~~~i~~~~~~ 122 (137)
T 3cfy_A 83 TAHGSVDLAVNLIQKGAEDFLE----------KPINADRLKTSVALHLKR 122 (137)
T ss_dssp ESSCCHHHHHHHHHTTCSEEEE----------SSCCHHHHHHHHHHHHHH
T ss_pred EecCcHHHHHHHHHCCccEEEe----------CCCCHHHHHHHHHHHHHH
Confidence 3 222 23344567788987 899999999999988764
No 110
>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}
Probab=46.94 E-value=40 Score=33.92 Aligned_cols=44 Identities=23% Similarity=0.310 Sum_probs=33.8
Q ss_pred HHHHHHHccEEEe--CCCCCCC---cHHHHHHHHcCCceEEcCCccccc
Q 007247 470 AHMIIAGADFILI--PSRFEPC---GLIQLHAMRYGTVPIVASTGGLVD 513 (611)
Q Consensus 470 ~~~i~~~aDv~l~--pS~~E~~---gl~~lEAma~G~PvI~s~~gg~~e 513 (611)
+.++++.||++.+ |..-|+. +-..+..|--|.-+|-+.-|++.+
T Consensus 188 l~ell~~sDivslh~Plt~~T~~li~~~~l~~mk~~a~lIN~aRG~iVd 236 (334)
T 3kb6_A 188 LDELLKESDVISLHVPYTKETHHMINEERISLMKDGVYLINTARGKVVD 236 (334)
T ss_dssp HHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTEEEEECSCGGGBC
T ss_pred HHHHHhhCCEEEEcCCCChhhccCcCHHHHhhcCCCeEEEecCcccccc
Confidence 4568999999875 5555664 456888888898899998888665
No 111
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=46.88 E-value=1.3e+02 Score=25.24 Aligned_cols=109 Identities=17% Similarity=0.258 Sum_probs=61.8
Q ss_pred CcEEEEEeCCCchhHHHHHHHHHHCCCceEEecccChHHHHHHHH--HccEEEeCCCC-CCCcHHHHHHHH---cCCceE
Q 007247 431 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMR---YGTVPI 504 (611)
Q Consensus 431 ~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~i~~--~aDv~l~pS~~-E~~gl~~lEAma---~G~PvI 504 (611)
..+++|+.+.. ...+.++.+....+-.+. ..-+.......+. ..|++++-... +.-|+.+++.+. ..+|+|
T Consensus 14 ~~~ILivdd~~-~~~~~l~~~L~~~g~~v~--~~~~~~~a~~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii 90 (153)
T 3hv2_A 14 RPEILLVDSQE-VILQRLQQLLSPLPYTLH--FARDATQALQLLASREVDLVISAAHLPQMDGPTLLARIHQQYPSTTRI 90 (153)
T ss_dssp CCEEEEECSCH-HHHHHHHHHHTTSSCEEE--EESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHHCTTSEEE
T ss_pred CceEEEECCCH-HHHHHHHHHhcccCcEEE--EECCHHHHHHHHHcCCCCEEEEeCCCCcCcHHHHHHHHHhHCCCCeEE
Confidence 45566666543 234444444444332222 2223333333333 34777775543 455777776665 367776
Q ss_pred EcCCcc----cccceecC-cceEEecccccccccCCccCHHHHHHHHHHHHHh
Q 007247 505 VASTGG----LVDTVEEG-FTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (611)
Q Consensus 505 ~s~~gg----~~e~v~~g-~~G~l~~~~~~~~~~v~~~d~~~la~~i~~ll~~ 552 (611)
+-.... ..+.+..| ..+++. .|-+.+++..+|..+++.
T Consensus 91 ~~s~~~~~~~~~~~~~~g~~~~~l~----------KP~~~~~l~~~i~~~l~~ 133 (153)
T 3hv2_A 91 LLTGDPDLKLIAKAINEGEIYRYLS----------KPWDDQELLLALRQALEH 133 (153)
T ss_dssp EECCCCCHHHHHHHHHTTCCSEEEC----------SSCCHHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHhCCCcceEEe----------CCCCHHHHHHHHHHHHHH
Confidence 644332 22334456 678876 899999999999999875
No 112
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=46.62 E-value=88 Score=25.78 Aligned_cols=109 Identities=13% Similarity=0.170 Sum_probs=64.1
Q ss_pred CcEEEEEeCCCchhHHHHHHHHHHCCCceEEecccChHHHHHHHH--HccEEEeCCCC-CCCcHHHHHHHHc--CCceEE
Q 007247 431 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMRY--GTVPIV 505 (611)
Q Consensus 431 ~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~i~~--~aDv~l~pS~~-E~~gl~~lEAma~--G~PvI~ 505 (611)
..+++|+.+.+ ...+.+..+....+-.+. ..-+....-..+. ..|++++-... +.-|+.+++.+.. .+|+|.
T Consensus 4 ~~~Ilivdd~~-~~~~~l~~~L~~~g~~v~--~~~~~~~al~~~~~~~~dlvllD~~l~~~~g~~l~~~l~~~~~~~ii~ 80 (136)
T 2qzj_A 4 QTKILIIDGDK-DNCQKLKGFLEEKGISID--LAYNCEEAIGKIFSNKYDLIFLEIILSDGDGWTLCKKIRNVTTCPIVY 80 (136)
T ss_dssp CCEEEEECSCH-HHHHHHHHHHHTTTCEEE--EESSHHHHHHHHHHCCCSEEEEESEETTEEHHHHHHHHHTTCCCCEEE
T ss_pred CCeEEEEcCCH-HHHHHHHHHHHHCCCEEE--EECCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHccCCCCCEEE
Confidence 45677777654 344555555444332222 2223333333443 35888765443 3356777777753 567665
Q ss_pred cC-Ccc---cccceecCcceEEecccccccccCCccCHHHHHHHHHHHHHh
Q 007247 506 AS-TGG---LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (611)
Q Consensus 506 s~-~gg---~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~~la~~i~~ll~~ 552 (611)
-. ... ..+.++.|..+++. .|-+.+++...|..++..
T Consensus 81 ls~~~~~~~~~~~~~~ga~~~l~----------KP~~~~~L~~~l~~~~~~ 121 (136)
T 2qzj_A 81 MTYINEDQSILNALNSGGDDYLI----------KPLNLEILYAKVKAILRR 121 (136)
T ss_dssp EESCCCHHHHHHHHHTTCCEEEE----------SSCCHHHHHHHHHHHHHH
T ss_pred EEcCCCHHHHHHHHHcCCcEEEE----------CCCCHHHHHHHHHHHHHH
Confidence 43 222 23345567889987 899999999999988764
No 113
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=46.56 E-value=44 Score=31.65 Aligned_cols=35 Identities=14% Similarity=0.083 Sum_probs=23.3
Q ss_pred CceEEEEeeeecCccccccHHHHhccchHHHHhC--CCeEEEEeec
Q 007247 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAAN--GHRVMTIAPR 127 (611)
Q Consensus 84 ~MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~--Gh~V~vit~~ 127 (611)
+|||+|+.+- .+.....+..+|.+. +++|..|..+
T Consensus 22 ~~rI~~l~SG---------~g~~~~~~l~~l~~~~~~~~I~~Vvt~ 58 (229)
T 3auf_A 22 MIRIGVLISG---------SGTNLQAILDGCREGRIPGRVAVVISD 58 (229)
T ss_dssp CEEEEEEESS---------CCHHHHHHHHHHHTTSSSEEEEEEEES
T ss_pred CcEEEEEEeC---------CcHHHHHHHHHHHhCCCCCeEEEEEcC
Confidence 4799999742 223566677788766 6787666544
No 114
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=46.24 E-value=1.2e+02 Score=24.60 Aligned_cols=109 Identities=14% Similarity=0.193 Sum_probs=65.5
Q ss_pred cEEEEEeCCCchhHHHHHHHHHHCCCceEEecccChHHHHHHH-H--HccEEEeCCCC-CCCcHHHHHHHHc-----CCc
Q 007247 432 VQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMII-A--GADFILIPSRF-EPCGLIQLHAMRY-----GTV 502 (611)
Q Consensus 432 ~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~i~-~--~aDv~l~pS~~-E~~gl~~lEAma~-----G~P 502 (611)
.+++|+.+.+ ...+.++.+....+-.... ...+.......+ . ..|++++-... +.-|+.+++.+.. .+|
T Consensus 6 ~~iLivdd~~-~~~~~l~~~L~~~g~~~v~-~~~~~~~a~~~~~~~~~~dlvi~D~~~p~~~g~~~~~~lr~~~~~~~~p 83 (129)
T 3h1g_A 6 MKLLVVDDSS-TMRRIIKNTLSRLGYEDVL-EAEHGVEAWEKLDANADTKVLITDWNMPEMNGLDLVKKVRSDSRFKEIP 83 (129)
T ss_dssp CCEEEECSCH-HHHHHHHHHHHHTTCCCEE-EESSHHHHHHHHHHCTTCCEEEECSCCSSSCHHHHHHHHHTSTTCTTCC
T ss_pred cEEEEEeCCH-HHHHHHHHHHHHcCCcEEE-EeCCHHHHHHHHHhCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCCe
Confidence 4567776543 3555565555554422111 122333332333 2 36888765443 4568888888764 567
Q ss_pred eEEcC-Ccc---cccceecCcceEEecccccccccCCccCHHHHHHHHHHHHHh
Q 007247 503 PIVAS-TGG---LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (611)
Q Consensus 503 vI~s~-~gg---~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~~la~~i~~ll~~ 552 (611)
+|.-. ... ..+.+..|..+|+. .|-+.+++.+.|+.++..
T Consensus 84 ii~~s~~~~~~~~~~~~~~g~~~~l~----------KP~~~~~L~~~l~~~l~~ 127 (129)
T 3h1g_A 84 IIMITAEGGKAEVITALKAGVNNYIV----------KPFTPQVLKEKLEVVLGT 127 (129)
T ss_dssp EEEEESCCSHHHHHHHHHHTCCEEEE----------SCCCHHHHHHHHHHHHCC
T ss_pred EEEEeCCCChHHHHHHHHcCccEEEe----------CCCCHHHHHHHHHHHhcc
Confidence 66643 332 23344567889987 999999999999998753
No 115
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=46.23 E-value=66 Score=25.16 Aligned_cols=107 Identities=12% Similarity=0.021 Sum_probs=60.5
Q ss_pred cEEEEEeCCCchhHHHHHHHHHHCCCceEEecccChHHHHHHHH--HccEEEeCCCC-CCCcHHHHHHHH-----cCCce
Q 007247 432 VQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMR-----YGTVP 503 (611)
Q Consensus 432 ~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~i~~--~aDv~l~pS~~-E~~gl~~lEAma-----~G~Pv 503 (611)
.+++|+.+.+ ...+.+.......+-++.. .-+.+.....+. ..|++++-... +.-|..+++.+. ..+|+
T Consensus 2 ~~iliv~~~~-~~~~~l~~~l~~~g~~v~~--~~~~~~~~~~l~~~~~dlii~d~~~~~~~~~~~~~~l~~~~~~~~~~i 78 (119)
T 2j48_A 2 GHILLLEEED-EAATVVCEMLTAAGFKVIW--LVDGSTALDQLDLLQPIVILMAWPPPDQSCLLLLQHLREHQADPHPPL 78 (119)
T ss_dssp CEEEEECCCH-HHHHHHHHHHHHTTCEEEE--ESCHHHHHHHHHHHCCSEEEEECSTTCCTHHHHHHHHHHTCCCSSCCC
T ss_pred CEEEEEeCCH-HHHHHHHHHHHhCCcEEEE--ecCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhccccCCCCE
Confidence 3566776544 3444555544444433332 223333333333 35888776544 445777888775 45676
Q ss_pred EEc-CCcccccceecCcceEEecccccccccCCccCHHHHHHHHHHHHH
Q 007247 504 IVA-STGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALA 551 (611)
Q Consensus 504 I~s-~~gg~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~~la~~i~~ll~ 551 (611)
|+- ......+....|..+++. .|-+.+++.+.|.+++.
T Consensus 79 i~~~~~~~~~~~~~~g~~~~l~----------kp~~~~~l~~~l~~~~~ 117 (119)
T 2j48_A 79 VLFLGEPPVDPLLTAQASAILS----------KPLDPQLLLTTLQGLCP 117 (119)
T ss_dssp EEEESSCCSSHHHHHHCSEECS----------SCSTTHHHHHHHHTTCC
T ss_pred EEEeCCCCchhhhhcCHHHhcc----------CCCCHHHHHHHHHHHhc
Confidence 653 322222445556677765 78899999998877653
No 116
>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1
Probab=46.10 E-value=85 Score=28.87 Aligned_cols=129 Identities=15% Similarity=0.148 Sum_probs=66.1
Q ss_pred cCHHHHHHHHHhcccCCcEEEEEeCCCchhHHHHHHHHHHCCCceEEecc----------------cChH-HHHHHHHHc
Q 007247 415 KGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAK----------------FNIP-LAHMIIAGA 477 (611)
Q Consensus 415 Kg~d~li~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~----------------~~~~-~~~~i~~~a 477 (611)
.+.+..-+..+.|.+.++.++- |.+.. ......+-+.+.+..+..+.. ..-. .-..+...|
T Consensus 42 ~~~~~A~~lg~~LA~~G~~vVs-Gg~~G-iM~aa~~gAl~~GG~~iGVlP~e~~~~~~~~~~~~~~~~f~~Rk~~m~~~s 119 (195)
T 1rcu_A 42 ELRDICLELGRTLAKKGYLVFN-GGRDG-VMELVSQGVREAGGTVVGILPDEEAGNPYLSVAVKTGLDFQMRSFVLLRNA 119 (195)
T ss_dssp GGHHHHHHHHHHHHHTTCEEEE-CCSSH-HHHHHHHHHHHTTCCEEEEESTTCCCCTTCSEEEECCCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHCCCEEEe-CCHHH-HHHHHHHHHHHcCCcEEEEeCCcccCCCCcceeeecCCCHHHHHHHHHHhC
Confidence 5666666666666667777655 74432 444444333333222222211 1111 222467788
Q ss_pred cEEEeCCCCCCCcH--HHHHHHHcCCceEEcCC-cccccceecC-cce-EEecccccccccCCccCHHHHHHHHHHH
Q 007247 478 DFILIPSRFEPCGL--IQLHAMRYGTVPIVAST-GGLVDTVEEG-FTG-FQMGSFSVDCEAVDPVDVAAVSTTVRRA 549 (611)
Q Consensus 478 Dv~l~pS~~E~~gl--~~lEAma~G~PvI~s~~-gg~~e~v~~g-~~G-~l~~~~~~~~~~v~~~d~~~la~~i~~l 549 (611)
|.+|+-. -++|. -+.||+..++||++-+. |...+.+..- ..| |+- +-..+ .+.-.+|++++.+.|.+.
T Consensus 120 da~Ivlp--GG~GTL~E~~eal~~~kPV~lln~~g~w~~~l~~~~~~G~fi~-~~~~~-~i~~~~~~ee~~~~l~~~ 192 (195)
T 1rcu_A 120 DVVVSIG--GEIGTAIEILGAYALGKPVILLRGTGGWTDRISQVLIDGKYLD-NRRIV-EIHQAWTVEEAVQIIEQI 192 (195)
T ss_dssp SEEEEES--CCHHHHHHHHHHHHTTCCEEEETTSCHHHHHGGGGCBTTTBSS-TTCCS-CEEEESSHHHHHHHHHTC
T ss_pred CEEEEec--CCCcHHHHHHHHHhcCCCEEEECCCCccHHHHHHHHHcCCcCC-HHHcC-eEEEeCCHHHHHHHHHHH
Confidence 9877643 24565 48899999999999864 4433333210 112 210 00000 011357888888877653
No 117
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=45.76 E-value=14 Score=35.27 Aligned_cols=39 Identities=23% Similarity=0.363 Sum_probs=28.9
Q ss_pred CCceEEEEeeeecCccccccHH--HHhccchHHHHhCCCeEEEEeec
Q 007247 83 VGLNILFVGTEVAPWSKTGGLG--DVLGGLPPALAANGHRVMTIAPR 127 (611)
Q Consensus 83 ~~MkIl~v~~~~~P~~~~GG~~--~~~~~La~~L~~~Gh~V~vit~~ 127 (611)
++|||+.|++. .||.| ....+||.+|+++|++|.+|=..
T Consensus 4 ~~~~vI~v~s~------kGGvGKTt~a~~LA~~la~~g~~VlliD~D 44 (257)
T 1wcv_1 4 AKVRRIALANQ------KGGVGKTTTAINLAAYLARLGKRVLLVDLD 44 (257)
T ss_dssp -CCCEEEECCS------SCCHHHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCCEEEEEEeC------CCCchHHHHHHHHHHHHHHCCCCEEEEECC
Confidence 35777777642 45554 67788999999999999999644
No 118
>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}
Probab=45.28 E-value=12 Score=38.10 Aligned_cols=30 Identities=23% Similarity=0.417 Sum_probs=24.6
Q ss_pred CceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEE
Q 007247 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTI 124 (611)
Q Consensus 84 ~MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vi 124 (611)
.|||++|+.- | .|+. +|..|+++|++|+|+
T Consensus 1 sm~V~IVGaG--p----aGl~-----~A~~L~~~G~~v~v~ 30 (412)
T 4hb9_A 1 SMHVGIIGAG--I----GGTC-----LAHGLRKHGIKVTIY 30 (412)
T ss_dssp CCEEEEECCS--H----HHHH-----HHHHHHHTTCEEEEE
T ss_pred CCEEEEECcC--H----HHHH-----HHHHHHhCCCCEEEE
Confidence 3899999863 3 5655 788999999999998
No 119
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=45.03 E-value=18 Score=32.03 Aligned_cols=38 Identities=16% Similarity=0.144 Sum_probs=30.7
Q ss_pred ceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEeec
Q 007247 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (611)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~~ 127 (611)
|||+++.. .+ +|....+...++..|.+.|++|.++-..
T Consensus 1 Mkv~IvY~--S~---tGnT~~~A~~ia~~l~~~g~~v~~~~~~ 38 (161)
T 3hly_A 1 MSVLIGYL--SD---YGYSDRLSQAIGRGLVKTGVAVEMVDLR 38 (161)
T ss_dssp -CEEEEEC--TT---STTHHHHHHHHHHHHHHTTCCEEEEETT
T ss_pred CEEEEEEE--CC---ChHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 78888864 24 6999999999999999999999888543
No 120
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}
Probab=44.59 E-value=15 Score=34.13 Aligned_cols=33 Identities=21% Similarity=0.411 Sum_probs=23.7
Q ss_pred ceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEeec
Q 007247 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (611)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~~ 127 (611)
|||++++. +|++| ..+++.|.++||+|.++...
T Consensus 5 ~~ilItGa-------tG~iG---~~l~~~L~~~g~~V~~~~r~ 37 (227)
T 3dhn_A 5 KKIVLIGA-------SGFVG---SALLNEALNRGFEVTAVVRH 37 (227)
T ss_dssp CEEEEETC-------CHHHH---HHHHHHHHTTTCEEEEECSC
T ss_pred CEEEEEcC-------CchHH---HHHHHHHHHCCCEEEEEEcC
Confidence 56665543 35555 45788899999999999765
No 121
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=44.57 E-value=1.3e+02 Score=24.51 Aligned_cols=109 Identities=19% Similarity=0.216 Sum_probs=66.4
Q ss_pred CcEEEEEeCCCchhHHHHHHHHHHCCCceEEecccChHHHHHHHH--H-ccEEEeCCCC-CCCcHHHHHHHHc----CCc
Q 007247 431 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--G-ADFILIPSRF-EPCGLIQLHAMRY----GTV 502 (611)
Q Consensus 431 ~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~i~~--~-aDv~l~pS~~-E~~gl~~lEAma~----G~P 502 (611)
..+++|+.+.. ...+.++.+....+-.+.. .-+.......+. . .|++++-... +.-|+.+++.+.. .+|
T Consensus 7 ~~~ilivdd~~-~~~~~l~~~L~~~g~~v~~--~~~~~~a~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~ 83 (136)
T 3hdv_A 7 RPLVLVVDDNA-VNREALILYLKSRGIDAVG--ADGAEEARLYLHYQKRIGLMITDLRMQPESGLDLIRTIRASERAALS 83 (136)
T ss_dssp CCEEEEECSCH-HHHHHHHHHHHHTTCCEEE--ESSHHHHHHHHHHCTTEEEEEECSCCSSSCHHHHHHHHHTSTTTTCE
T ss_pred CCeEEEECCCH-HHHHHHHHHHHHcCceEEE--eCCHHHHHHHHHhCCCCcEEEEeccCCCCCHHHHHHHHHhcCCCCCC
Confidence 45777777654 3455555555554433433 223333333333 2 5777776544 5567888887764 356
Q ss_pred eEEcCCcc----cccceecCcceEEecccccccccCCccCHHHHHHHHHHHHHh
Q 007247 503 PIVASTGG----LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (611)
Q Consensus 503 vI~s~~gg----~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~~la~~i~~ll~~ 552 (611)
+|+..... ..+.+..|..+++. .|-+.+++.+.|++++..
T Consensus 84 ii~~s~~~~~~~~~~~~~~g~~~~l~----------KP~~~~~l~~~i~~~~~~ 127 (136)
T 3hdv_A 84 IIVVSGDTDVEEAVDVMHLGVVDFLL----------KPVDLGKLLELVNKELKI 127 (136)
T ss_dssp EEEEESSCCHHHHHHHHHTTCSEEEE----------SSCCHHHHHHHHHHHHC-
T ss_pred EEEEeCCCChHHHHHHHhCCcceEEe----------CCCCHHHHHHHHHHHhcC
Confidence 66543322 23344567888987 899999999999998875
No 122
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=44.04 E-value=1.4e+02 Score=24.95 Aligned_cols=108 Identities=16% Similarity=0.175 Sum_probs=63.6
Q ss_pred cEEEEEeCCCchhHHHHHHHHHHCCCceEEecccChHHHHHHHH--HccEEEeCCCC-CCCcHHHHHHHH---cCCceEE
Q 007247 432 VQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMR---YGTVPIV 505 (611)
Q Consensus 432 ~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~i~~--~aDv~l~pS~~-E~~gl~~lEAma---~G~PvI~ 505 (611)
.+++|+.+.+ ...+.+..+....+-.+. ..-+.......+. ..|++++-... +.-|+.+++.+. ..+|+|+
T Consensus 4 ~~ILivdd~~-~~~~~l~~~L~~~g~~v~--~~~~~~~a~~~l~~~~~dliild~~l~~~~g~~~~~~l~~~~~~~pii~ 80 (155)
T 1qkk_A 4 PSVFLIDDDR-DLRKAMQQTLELAGFTVS--SFASATEALAGLSADFAGIVISDIRMPGMDGLALFRKILALDPDLPMIL 80 (155)
T ss_dssp CEEEEECSCH-HHHHHHHHHHHHTTCEEE--EESCHHHHHHTCCTTCCSEEEEESCCSSSCHHHHHHHHHHHCTTSCEEE
T ss_pred CEEEEEeCCH-HHHHHHHHHHHHcCcEEE--EECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEE
Confidence 4667776544 344455554444442232 2223333333332 35888775544 345676776664 3677766
Q ss_pred cCC-cc---cccceecCcceEEecccccccccCCccCHHHHHHHHHHHHHh
Q 007247 506 AST-GG---LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (611)
Q Consensus 506 s~~-gg---~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~~la~~i~~ll~~ 552 (611)
-.. .. ..+.+..|..+++. .|.+.+++...|..++..
T Consensus 81 ls~~~~~~~~~~~~~~g~~~~l~----------kP~~~~~L~~~i~~~~~~ 121 (155)
T 1qkk_A 81 VTGHGDIPMAVQAIQDGAYDFIA----------KPFAADRLVQSARRAEEK 121 (155)
T ss_dssp EECGGGHHHHHHHHHTTCCEEEE----------SSCCHHHHHHHHHHHHHH
T ss_pred EECCCChHHHHHHHhcCCCeEEe----------CCCCHHHHHHHHHHHHHH
Confidence 432 22 23344567788887 899999999999999875
No 123
>3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ...
Probab=44.01 E-value=17 Score=34.46 Aligned_cols=40 Identities=18% Similarity=0.109 Sum_probs=29.7
Q ss_pred CceEEEEeeeecCcccccc-HHHHhccchHHHHhCCCeEEEEeec
Q 007247 84 GLNILFVGTEVAPWSKTGG-LGDVLGGLPPALAANGHRVMTIAPR 127 (611)
Q Consensus 84 ~MkIl~v~~~~~P~~~~GG-~~~~~~~La~~L~~~Gh~V~vit~~ 127 (611)
.|||++|... |. .++ ...+...+...|.+.||+|.++-..
T Consensus 1 ~mkiLiI~gs--pr--~~S~t~~l~~~~~~~l~~~g~ev~~~dL~ 41 (228)
T 3tem_A 1 GKKVLIVYAH--QE--PKSFNGSLKNVAVDELSRQGCTVTVSDLY 41 (228)
T ss_dssp CCEEEEEECC--SC--TTSHHHHHHHHHHHHHHHHTCEEEEEETT
T ss_pred CCEEEEEEeC--CC--CCCHHHHHHHHHHHHHHHCCCEEEEEEhh
Confidence 4899999975 53 344 4556666778888889999999654
No 124
>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*
Probab=43.95 E-value=50 Score=31.63 Aligned_cols=78 Identities=13% Similarity=0.123 Sum_probs=46.9
Q ss_pred EEEEEeC-CCchhHHHHHHHHHHCCC-ceEEecccChHHHHHHHH-HccEEEeCCCCCCCcHHHHHHHHcCCceEEcCCc
Q 007247 433 QIIVLGT-GKKPMEKQLEQLEILYPE-KARGVAKFNIPLAHMIIA-GADFILIPSRFEPCGLIQLHAMRYGTVPIVASTG 509 (611)
Q Consensus 433 ~lvivG~-g~~~~~~~l~~l~~~~~~-~v~~~~~~~~~~~~~i~~-~aDv~l~pS~~E~~gl~~lEAma~G~PvI~s~~g 509 (611)
++.|+|. |. +-+.+.+.....++ .+........+ +..++. .+|+++=-+..+..--.+..+...|+|+|+..+|
T Consensus 2 kV~V~Ga~G~--mG~~i~~~~~~~~~~elva~~d~~~d-l~~~~~~~~DvvIDfT~p~a~~~~~~~a~~~g~~~VigTTG 78 (245)
T 1p9l_A 2 RVGVLGAKGK--VGTTMVRAVAAADDLTLSAELDAGDP-LSLLTDGNTEVVIDFTHPDVVMGNLEFLIDNGIHAVVGTTG 78 (245)
T ss_dssp EEEEETTTSH--HHHHHHHHHHHCTTCEEEEEECTTCC-THHHHHTTCCEEEECSCTTTHHHHHHHHHHTTCEEEECCCC
T ss_pred EEEEECCCCH--HHHHHHHHHHhCCCCEEEEEEccCCC-HHHHhccCCcEEEEccChHHHHHHHHHHHHcCCCEEEcCCC
Confidence 6788884 76 66666666554432 23333322222 223454 7999995555555434455678899999998776
Q ss_pred cccc
Q 007247 510 GLVD 513 (611)
Q Consensus 510 g~~e 513 (611)
...|
T Consensus 79 ~~~e 82 (245)
T 1p9l_A 79 FTAE 82 (245)
T ss_dssp CCHH
T ss_pred CCHH
Confidence 5444
No 125
>1kjn_A MTH0777; hypotethical protein, structural genomics, PSI, protein structure initiative; 2.20A {Methanothermobacterthermautotrophicus} SCOP: c.115.1.1
Probab=43.42 E-value=27 Score=30.62 Aligned_cols=42 Identities=19% Similarity=-0.018 Sum_probs=28.6
Q ss_pred cCCCceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEee
Q 007247 81 CGVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAP 126 (611)
Q Consensus 81 ~~~~MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~ 126 (611)
....||++++-. | |. ..-.--..-.|+..|.++||+|+|-..
T Consensus 3 ~~~~m~~LilLG-C-PE--~Pvq~p~~lYl~~~Lk~~G~~v~VA~n 44 (157)
T 1kjn_A 3 TESTGKALMVLG-C-PE--SPVQIPLAIYTSHKLKKKGFRVTVTAN 44 (157)
T ss_dssp ---CCEEEEECC-C-SC--STTHHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred cccceeeeEEec-C-CC--CcchhhHHHHHHHHHHhcCCeeEEecC
Confidence 345699888853 2 32 233555777889999999999999863
No 126
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=43.40 E-value=2.3e+02 Score=27.24 Aligned_cols=118 Identities=12% Similarity=0.100 Sum_probs=69.9
Q ss_pred CcEEEEEcCccc--ccCHHHHHHHHHhcccCCcEEEEEeCCCchhHHHHHHHHHHCCCceEEeccc--ChHHHHHHHHHc
Q 007247 402 IPVIGFIGRLEE--QKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKF--NIPLAHMIIAGA 477 (611)
Q Consensus 402 ~~~il~iGrl~~--~Kg~d~li~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~--~~~~~~~i~~~a 477 (611)
.|+++ .+-.++ +.|++.+++.+.+. .+.-+|+.+-+.+-...+.+...+++-...+.+.. +.+.+..+.+.+
T Consensus 96 ~Pivl-m~Y~npv~~~g~e~f~~~~~~a---Gvdgvii~Dlp~ee~~~~~~~~~~~gl~~i~liaP~t~~eri~~i~~~~ 171 (267)
T 3vnd_A 96 MPIGL-LLYANLVFANGIDEFYTKAQAA---GVDSVLIADVPVEESAPFSKAAKAHGIAPIFIAPPNADADTLKMVSEQG 171 (267)
T ss_dssp CCEEE-EECHHHHHHHCHHHHHHHHHHH---TCCEEEETTSCGGGCHHHHHHHHHTTCEEECEECTTCCHHHHHHHHHHC
T ss_pred CCEEE-EecCcHHHHhhHHHHHHHHHHc---CCCEEEeCCCCHhhHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHhC
Confidence 35444 455444 67999999998887 77788888876444455556666666444444433 446777788888
Q ss_pred c-EEEeCCCCCCCcHH------HHHHHH-----cCCceEEcCCccc--cc----ceecCcceEEec
Q 007247 478 D-FILIPSRFEPCGLI------QLHAMR-----YGTVPIVASTGGL--VD----TVEEGFTGFQMG 525 (611)
Q Consensus 478 D-v~l~pS~~E~~gl~------~lEAma-----~G~PvI~s~~gg~--~e----~v~~g~~G~l~~ 525 (611)
+ ++.+.|.....|.. +.|.+. ..+|+++ .+|+ .| .+..+-.|+++|
T Consensus 172 ~gfvY~vS~~GvTG~~~~~~~~~~~~v~~vr~~~~~pv~v--GfGI~~~e~~~~~~~~gADgvVVG 235 (267)
T 3vnd_A 172 EGYTYLLSRAGVTGTESKAGEPIENILTQLAEFNAPPPLL--GFGIAEPEQVRAAIKAGAAGAISG 235 (267)
T ss_dssp CSCEEESCCCCCC--------CHHHHHHHHHTTTCCCEEE--CSSCCSHHHHHHHHHTTCSEEEEC
T ss_pred CCcEEEEecCCCCCCccCCcHHHHHHHHHHHHhcCCCEEE--ECCcCCHHHHHHHHHcCCCEEEEC
Confidence 6 55554654333321 222222 3677776 3444 23 444677899885
No 127
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=43.03 E-value=1.3e+02 Score=24.12 Aligned_cols=109 Identities=14% Similarity=0.233 Sum_probs=64.8
Q ss_pred CcEEEEEeCCCchhHHHHHHHHHHCCCceEEecccChHHHHHHHHH--ccEEEeCCCC-CCCcHHHHHHHH---cCCceE
Q 007247 431 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAG--ADFILIPSRF-EPCGLIQLHAMR---YGTVPI 504 (611)
Q Consensus 431 ~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~i~~~--aDv~l~pS~~-E~~gl~~lEAma---~G~PvI 504 (611)
+.+++|+.+.+ ...+.+..+....+-.+. ..-+....-..+.. .|++++-... +.-|+-+++.+. ..+|+|
T Consensus 3 ~~~ilivdd~~-~~~~~l~~~l~~~~~~v~--~~~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii 79 (126)
T 1dbw_A 3 DYTVHIVDDEE-PVRKSLAFMLTMNGFAVK--MHQSAEAFLAFAPDVRNGVLVTDLRMPDMSGVELLRNLGDLKINIPSI 79 (126)
T ss_dssp CCEEEEEESSH-HHHHHHHHHHHHTTCEEE--EESCHHHHHHHGGGCCSEEEEEECCSTTSCHHHHHHHHHHTTCCCCEE
T ss_pred CCEEEEEcCCH-HHHHHHHHHHHhCCcEEE--EeCCHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHhcCCCCCEE
Confidence 35677777654 344555555444443232 22234433334433 5777765443 345677777664 356766
Q ss_pred EcC-Ccc---cccceecCcceEEecccccccccCCccCHHHHHHHHHHHHHh
Q 007247 505 VAS-TGG---LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (611)
Q Consensus 505 ~s~-~gg---~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~~la~~i~~ll~~ 552 (611)
.-. ... ..+.++.|..+++. .|.+.+++.+.|.+++..
T Consensus 80 ~~s~~~~~~~~~~~~~~ga~~~l~----------Kp~~~~~l~~~i~~~~~~ 121 (126)
T 1dbw_A 80 VITGHGDVPMAVEAMKAGAVDFIE----------KPFEDTVIIEAIERASEH 121 (126)
T ss_dssp EEECTTCHHHHHHHHHTTCSEEEE----------SSCCHHHHHHHHHHHHTT
T ss_pred EEECCCCHHHHHHHHHhCHHHhee----------CCCCHHHHHHHHHHHHHh
Confidence 543 322 23345567889987 899999999999988764
No 128
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=42.69 E-value=1.3e+02 Score=24.14 Aligned_cols=110 Identities=16% Similarity=0.073 Sum_probs=62.7
Q ss_pred CcEEEEEeCCCchhHHHHHHHHHHCCCceEEecccChHHHHHHHH---HccEEEeCCCC-C-CCcHHHHHHHHc---CCc
Q 007247 431 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA---GADFILIPSRF-E-PCGLIQLHAMRY---GTV 502 (611)
Q Consensus 431 ~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~i~~---~aDv~l~pS~~-E-~~gl~~lEAma~---G~P 502 (611)
..+++|+.+.+ ...+.++......+-.+. ..-+.......+. ..|++++-... + .-|+.+++.+.. .+|
T Consensus 5 ~~~ilivdd~~-~~~~~l~~~L~~~g~~v~--~~~~~~~a~~~l~~~~~~dlvi~d~~l~~~~~g~~~~~~l~~~~~~~~ 81 (132)
T 2rdm_A 5 AVTILLADDEA-ILLLDFESTLTDAGFLVT--AVSSGAKAIEMLKSGAAIDGVVTDIRFCQPPDGWQVARVAREIDPNMP 81 (132)
T ss_dssp SCEEEEECSSH-HHHHHHHHHHHHTTCEEE--EESSHHHHHHHHHTTCCCCEEEEESCCSSSSCHHHHHHHHHHHCTTCC
T ss_pred CceEEEEcCcH-HHHHHHHHHHHHcCCEEE--EECCHHHHHHHHHcCCCCCEEEEeeeCCCCCCHHHHHHHHHhcCCCCC
Confidence 46777777654 344555554444443333 2234444434443 36888875544 3 457777776653 677
Q ss_pred eEEcCCcccccceecC--cceEEecccccccccCCccCHHHHHHHHHHHHHhc
Q 007247 503 PIVASTGGLVDTVEEG--FTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY 553 (611)
Q Consensus 503 vI~s~~gg~~e~v~~g--~~G~l~~~~~~~~~~v~~~d~~~la~~i~~ll~~~ 553 (611)
+|.-....-.+....+ ..+++. .|-+.+++...|.+++...
T Consensus 82 ii~~s~~~~~~~~~~~~~~~~~l~----------kP~~~~~l~~~i~~~~~~~ 124 (132)
T 2rdm_A 82 IVYISGHAALEWASNGVPDSIILE----------KPFTSAQLITAVSQLLNAR 124 (132)
T ss_dssp EEEEESSCCTTHHHHSCTTCEEEE----------SSCCHHHHHHHHHHHHHTT
T ss_pred EEEEeCCccHHHHHhhcCCcceEe----------CCCCHHHHHHHHHHHHhcC
Confidence 7664332222222211 125765 8999999999999998764
No 129
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=42.63 E-value=23 Score=30.45 Aligned_cols=38 Identities=26% Similarity=0.338 Sum_probs=31.2
Q ss_pred ceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEeec
Q 007247 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (611)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~~ 127 (611)
|||+++... .+|....+...++..|.+.|++|.++...
T Consensus 2 ~ki~I~y~S-----~tGnT~~~A~~ia~~l~~~g~~v~~~~~~ 39 (148)
T 3f6r_A 2 SKVLIVFGS-----STGNTESIAQKLEELIAAGGHEVTLLNAA 39 (148)
T ss_dssp CEEEEEEEC-----SSSHHHHHHHHHHHHHHTTTCEEEEEETT
T ss_pred CeEEEEEEC-----CCchHHHHHHHHHHHHHhCCCeEEEEehh
Confidence 688877643 36889999999999999999999998654
No 130
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=42.53 E-value=18 Score=32.91 Aligned_cols=38 Identities=18% Similarity=0.138 Sum_probs=31.0
Q ss_pred CceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEeec
Q 007247 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (611)
Q Consensus 84 ~MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~~ 127 (611)
.|||++|... .|-...+...++..+.+.|++|.++-..
T Consensus 4 mmkilii~~S------~g~T~~la~~i~~~l~~~g~~v~~~~l~ 41 (199)
T 2zki_A 4 KPNILVLFYG------YGSIVELAKEIGKGAEEAGAEVKIRRVR 41 (199)
T ss_dssp CCEEEEEECC------SSHHHHHHHHHHHHHHHHSCEEEEEECC
T ss_pred CcEEEEEEeC------ccHHHHHHHHHHHHHHhCCCEEEEEehh
Confidence 4899999753 4678888888999999899999988654
No 131
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=42.40 E-value=1.3e+02 Score=24.13 Aligned_cols=109 Identities=17% Similarity=0.175 Sum_probs=62.5
Q ss_pred CcEEEEEeCCCchhHHHHHHHHHHCCCceEEecccChHHHHHHHH--HccEEEeCCCC-CCCcHHHHHHHHc---CCceE
Q 007247 431 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMRY---GTVPI 504 (611)
Q Consensus 431 ~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~i~~--~aDv~l~pS~~-E~~gl~~lEAma~---G~PvI 504 (611)
+.+++|+.+.+ ...+.++.+....+..+. ..-+.......+. ..|++++-... +.-|+.+++.+.. .+|+|
T Consensus 7 ~~~ilivdd~~-~~~~~l~~~L~~~g~~v~--~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii 83 (130)
T 3eod_A 7 GKQILIVEDEQ-VFRSLLDSWFSSLGATTV--LAADGVDALELLGGFTPDLMICDIAMPRMNGLKLLEHIRNRGDQTPVL 83 (130)
T ss_dssp TCEEEEECSCH-HHHHHHHHHHHHTTCEEE--EESCHHHHHHHHTTCCCSEEEECCC-----CHHHHHHHHHTTCCCCEE
T ss_pred CCeEEEEeCCH-HHHHHHHHHHHhCCceEE--EeCCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEE
Confidence 46777877654 345555555555543332 2234444444443 35888876543 4457777777654 46766
Q ss_pred EcCCcc----cccceecCcceEEecccccccccCCcc-CHHHHHHHHHHHHHh
Q 007247 505 VASTGG----LVDTVEEGFTGFQMGSFSVDCEAVDPV-DVAAVSTTVRRALAT 552 (611)
Q Consensus 505 ~s~~gg----~~e~v~~g~~G~l~~~~~~~~~~v~~~-d~~~la~~i~~ll~~ 552 (611)
+-.... ..+.+..|..+++. .|- +.+++.+.+.+++..
T Consensus 84 ~~t~~~~~~~~~~~~~~g~~~~l~----------KP~~~~~~l~~~i~~~l~~ 126 (130)
T 3eod_A 84 VISATENMADIAKALRLGVEDVLL----------KPVKDLNRLREMVFACLYP 126 (130)
T ss_dssp EEECCCCHHHHHHHHHHCCSEEEE----------SCC---CHHHHHHHHHHC-
T ss_pred EEEcCCCHHHHHHHHHcCCCEEEe----------CCCCcHHHHHHHHHHHhch
Confidence 543222 23345568888887 787 899999999998864
No 132
>2d1p_B TUSC, hypothetical UPF0116 protein YHEM; tRNA modification, sulfur transfer, structural genomics, translation; 2.15A {Escherichia coli} SCOP: c.114.1.1
Probab=42.16 E-value=24 Score=29.62 Aligned_cols=39 Identities=21% Similarity=0.029 Sum_probs=28.8
Q ss_pred eEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEeec
Q 007247 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (611)
Q Consensus 86 kIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~~ 127 (611)
|++|+... +|+ ..-.+.-...++.++.+.||+|.|+-..
T Consensus 3 k~~~vv~~-~P~--g~~~~~~al~~a~a~~a~~~~v~vff~~ 41 (119)
T 2d1p_B 3 RIAFVFST-APH--GTAAGREGLDALLATSALTDDLAVFFIA 41 (119)
T ss_dssp CEEEEECS-CTT--TSTHHHHHHHHHHHHHTTCSCEEEEECG
T ss_pred EEEEEEcC-CCC--CcHHHHHHHHHHHHHHhCCCCEEEEEeh
Confidence 58888876 676 2234455668899999999999888644
No 133
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}
Probab=41.68 E-value=14 Score=34.25 Aligned_cols=33 Identities=27% Similarity=0.495 Sum_probs=24.6
Q ss_pred ceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEeec
Q 007247 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (611)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~~ 127 (611)
|||++++. +|++| ..+++.|.++||+|.+++..
T Consensus 1 M~ilItGa-------tG~iG---~~l~~~L~~~g~~V~~~~R~ 33 (219)
T 3dqp_A 1 MKIFIVGS-------TGRVG---KSLLKSLSTTDYQIYAGARK 33 (219)
T ss_dssp CEEEEEST-------TSHHH---HHHHHHHTTSSCEEEEEESS
T ss_pred CeEEEECC-------CCHHH---HHHHHHHHHCCCEEEEEECC
Confidence 67766553 35555 45788899999999999865
No 134
>3bq9_A Predicted rossmann fold nucleotide-binding domain containing protein; structural genomics, PSI-2, protein structure initiative; 1.80A {Idiomarina baltica}
Probab=41.17 E-value=2.4e+02 Score=29.39 Aligned_cols=136 Identities=14% Similarity=0.073 Sum_probs=75.5
Q ss_pred CCcEEEEEcCcccccCHHHHHHHHHhcc----cCCcEEEEEeCCCchhHHHHHHHHHH------CCCceEEecc-c----
Q 007247 401 NIPVIGFIGRLEEQKGSDILAAAIPHFI----KENVQIIVLGTGKKPMEKQLEQLEIL------YPEKARGVAK-F---- 465 (611)
Q Consensus 401 ~~~~il~iGrl~~~Kg~d~li~a~~~l~----~~~~~lvivG~g~~~~~~~l~~l~~~------~~~~v~~~~~-~---- 465 (611)
.+.+++|.|.-.. + +...+++.++- +.++.+ |.|.|+.-|+...+.-... .+..+.++.. +
T Consensus 144 ~~~ivVv~GSs~~--~-~~~Ye~A~eLGr~LA~~G~~L-VtGGG~GlMEaa~aGA~~a~s~qr~~GG~vIGIiP~~L~~~ 219 (460)
T 3bq9_A 144 EPNMVVCWGGHSI--N-EIEYKYTKDVGYHIGLRGLNI-CTGCGPGAMKGPMKGATIGHAKQRVEGGRYLGLTEPGIIAA 219 (460)
T ss_dssp CSCEEEEECCSSC--C-HHHHHHHHHHHHHHHHTTCEE-EECCSSGGGTHHHHHHHHHHHHTTCSSCCEEEEECTTTTTT
T ss_pred CCCEEEEEcCCCC--C-CHHHHHHHHHHHHHHHCCCEE-EeCCcHHHhhHHHhhHHhhcccccCCCCEEEEEeChhhhhh
Confidence 3346777765432 2 22234444443 356665 5566666665666555544 2344554431 1
Q ss_pred -------------C--hHHHHHHHHHccEEEeCCCCCCCcHH--HHHHHH---------cCCceEEcC---Ccc-cccc-
Q 007247 466 -------------N--IPLAHMIIAGADFILIPSRFEPCGLI--QLHAMR---------YGTVPIVAS---TGG-LVDT- 514 (611)
Q Consensus 466 -------------~--~~~~~~i~~~aDv~l~pS~~E~~gl~--~lEAma---------~G~PvI~s~---~gg-~~e~- 514 (611)
. ......++..||++|.-. -|+|.. ++|++. .++|||..+ +.| ...+
T Consensus 220 E~~N~~vtelIiv~~m~eRK~~mv~~SDAfIaLP--GG~GTLeELfEaLT~~QLg~~k~~~kPVVLlg~~n~~gywd~Ll 297 (460)
T 3bq9_A 220 EPPNPIVNELVILPDIEKRLEAFVRCAHGIVIFP--GGAGTAEELLYLLGILMHPDNQRQSLPVILTGPASSRDYFEALD 297 (460)
T ss_dssp SCCCTTCSEEEECSSHHHHHHHHHHHCSEEEECS--CSHHHHHHHHHHHHHHTSGGGTTCCCCEEEEECGGGHHHHHHHH
T ss_pred hhcCCCCCeEEEECCHHHHHHHHHHhCCEEEEcC--CCcchHHHHHHHHHHHhhccccCCCCCEEEEecCCccchhhHHH
Confidence 0 111224778899877533 467775 888887 488999985 222 2222
Q ss_pred --ee----c-CcceEEecccccccccCCccCHHHHHHHHHHHHHh
Q 007247 515 --VE----E-GFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (611)
Q Consensus 515 --v~----~-g~~G~l~~~~~~~~~~v~~~d~~~la~~i~~ll~~ 552 (611)
+. + ....+++ -.+|++++++.|...+..
T Consensus 298 ~~l~~~l~~~~~~~~ii----------v~ddpeEal~~l~~~~~~ 332 (460)
T 3bq9_A 298 EFIGATIGDEARQLYKI----------IIDDPAAVAQHMHAGMAA 332 (460)
T ss_dssp HHHHHHTCTTGGGGCEE----------EESCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcchhhcCcEE----------EeCCHHHHHHHHHHHHHH
Confidence 11 1 1112221 358999999999888775
No 135
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=41.00 E-value=2e+02 Score=26.66 Aligned_cols=109 Identities=12% Similarity=0.105 Sum_probs=64.3
Q ss_pred CcEEEEEeCCCchhHHHHHHHHHHCCCceEEecccChHHHHHHHH--HccEEEeCCCC-CCCcHHHHHHHHc---CCceE
Q 007247 431 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMRY---GTVPI 504 (611)
Q Consensus 431 ~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~i~~--~aDv~l~pS~~-E~~gl~~lEAma~---G~PvI 504 (611)
..+++|+.+.+ ...+.+..+....+-.+. ..-+...+-..+. ..|++++--.. +.-|+-+++.+.. .+|+|
T Consensus 23 ~~~ILivdd~~-~~~~~l~~~L~~~g~~v~--~~~~~~~al~~~~~~~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii 99 (250)
T 3r0j_A 23 EARVLVVDDEA-NIVELLSVSLKFQGFEVY--TATNGAQALDRARETRPDAVILDVXMPGMDGFGVLRRLRADGIDAPAL 99 (250)
T ss_dssp SCEEEEECSCH-HHHHHHHHHHHHTTCEEE--EESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHTTCCCCEE
T ss_pred CceEEEEECCH-HHHHHHHHHHHHCCCEEE--EECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEE
Confidence 45677776543 244444444444432222 2223433333332 36887775443 4467777777753 56766
Q ss_pred EcCC-cc---cccceecCcceEEecccccccccCCccCHHHHHHHHHHHHHh
Q 007247 505 VAST-GG---LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (611)
Q Consensus 505 ~s~~-gg---~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~~la~~i~~ll~~ 552 (611)
.-.. .. ..+.+..|..+++. .|.+.+++...|..++..
T Consensus 100 ~lt~~~~~~~~~~~~~~Ga~~yl~----------Kp~~~~~L~~~i~~~~~~ 141 (250)
T 3r0j_A 100 FLTARDSLQDKIAGLTLGGDDYVT----------KPFSLEEVVARLRVILRR 141 (250)
T ss_dssp EEECSTTHHHHHHHHTSTTCEEEE----------SSCCHHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHHcCCcEEEe----------CCCCHHHHHHHHHHHHHh
Confidence 5432 22 23345567889987 899999999999999863
No 136
>2phj_A 5'-nucleotidase SURE; SURE protein, putative acid phosphatase, structural genomics, 3-D structure, mixed alpha/beta protein, NPPSFA; 1.50A {Aquifex aeolicus VF5} PDB: 2wqk_A
Probab=40.98 E-value=17 Score=35.16 Aligned_cols=38 Identities=29% Similarity=0.448 Sum_probs=28.5
Q ss_pred ceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEeecCCc
Q 007247 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQ 130 (611)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~~~~~ 130 (611)
||||+.+.. |=...-+..|.++|.+.| +|+|++|...+
T Consensus 2 M~ILlTNDD-------Gi~apGi~aL~~~l~~~g-~V~VVAP~~~~ 39 (251)
T 2phj_A 2 PTFLLVNDD-------GYFSPGINALREALKSLG-RVVVVAPDRNL 39 (251)
T ss_dssp CEEEEECSS-------CTTCHHHHHHHHHHTTTS-EEEEEEESSCC
T ss_pred CEEEEECCC-------CCCCHHHHHHHHHHHhcC-CEEEEecCCCc
Confidence 899988865 112234777899999988 99999998543
No 137
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=40.88 E-value=26 Score=29.33 Aligned_cols=33 Identities=30% Similarity=0.586 Sum_probs=23.7
Q ss_pred CceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEeec
Q 007247 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (611)
Q Consensus 84 ~MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~~ 127 (611)
.|||++++. |.+| ..+++.|.+.||+|+++...
T Consensus 4 ~m~i~IiG~--------G~iG---~~~a~~L~~~g~~v~~~d~~ 36 (140)
T 1lss_A 4 GMYIIIAGI--------GRVG---YTLAKSLSEKGHDIVLIDID 36 (140)
T ss_dssp -CEEEEECC--------SHHH---HHHHHHHHHTTCEEEEEESC
T ss_pred CCEEEEECC--------CHHH---HHHHHHHHhCCCeEEEEECC
Confidence 588888863 3333 34788899999999998654
No 138
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=40.85 E-value=1.4e+02 Score=24.01 Aligned_cols=107 Identities=11% Similarity=0.017 Sum_probs=62.8
Q ss_pred cEEEEEeCCCchhHHHHHHHHHHCCCceEEecccChHHHHHHHH--HccEEEeCCCC-CCCcHHHHHHHHc-----CCce
Q 007247 432 VQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMRY-----GTVP 503 (611)
Q Consensus 432 ~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~i~~--~aDv~l~pS~~-E~~gl~~lEAma~-----G~Pv 503 (611)
.+++|+.+.. ...+.++.+.. .. ......-+.......+. ..|++++-... +.-|+.+++.+.. .+|+
T Consensus 5 ~~ilivdd~~-~~~~~l~~~l~-~~--~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pi 80 (133)
T 3nhm_A 5 PKVLIVENSW-TMRETLRLLLS-GE--FDCTTAADGASGLQQALAHPPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPV 80 (133)
T ss_dssp CEEEEECSCH-HHHHHHHHHHT-TT--SEEEEESSHHHHHHHHHHSCCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCE
T ss_pred CEEEEEcCCH-HHHHHHHHHHh-CC--cEEEEECCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCE
Confidence 4667776543 24444444443 22 22222223443333443 35888776544 4567778877764 6777
Q ss_pred EEcCCcc---cccceecCcceEEecccccccccCCccCHHHHHHHHHHHHHh
Q 007247 504 IVASTGG---LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (611)
Q Consensus 504 I~s~~gg---~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~~la~~i~~ll~~ 552 (611)
|+-.... ..+.+..|..+++. .|-+.+++.+.|.++++.
T Consensus 81 i~~s~~~~~~~~~~~~~g~~~~l~----------KP~~~~~l~~~i~~~l~~ 122 (133)
T 3nhm_A 81 IFVSGYAPRTEGPADQPVPDAYLV----------KPVKPPVLIAQLHALLAR 122 (133)
T ss_dssp EEEESCCC-----TTSCCCSEEEE----------SSCCHHHHHHHHHHHHHH
T ss_pred EEEeCCCcHhHHHHhhcCCceEEe----------ccCCHHHHHHHHHHHHhh
Confidence 6643221 23345567778876 899999999999999986
No 139
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=40.41 E-value=1.5e+02 Score=24.25 Aligned_cols=109 Identities=10% Similarity=0.092 Sum_probs=66.7
Q ss_pred CcEEEEEeCCCchhHHHHHHHHHHCCC--ceEEecccChHHHHHHHH------------HccEEEeCCCC-CCCcHHHHH
Q 007247 431 NVQIIVLGTGKKPMEKQLEQLEILYPE--KARGVAKFNIPLAHMIIA------------GADFILIPSRF-EPCGLIQLH 495 (611)
Q Consensus 431 ~~~lvivG~g~~~~~~~l~~l~~~~~~--~v~~~~~~~~~~~~~i~~------------~aDv~l~pS~~-E~~gl~~lE 495 (611)
..+++|+.+.+ ...+.++.+....+. .+. ..-+.......+. ..|++++-... +.-|+.+++
T Consensus 6 ~~~iLivdd~~-~~~~~l~~~L~~~g~~~~v~--~~~~~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~ 82 (149)
T 1k66_A 6 TQPLLVVEDSD-EDFSTFQRLLQREGVVNPIY--RCITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNLPGTDGREVLQ 82 (149)
T ss_dssp TSCEEEECCCH-HHHHHHHHHHHHTTBCSCEE--EECSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCCSSSCHHHHHH
T ss_pred CccEEEEECCH-HHHHHHHHHHHHcCCCceEE--EECCHHHHHHHHHhcccccCcccCCCCcEEEEECCCCCCCHHHHHH
Confidence 45677777544 345555555555442 232 2223444444554 36888876554 446778888
Q ss_pred HHH-----cCCceEEcCCcc----cccceecCcceEEecccccccccCCccCHHHHHHHHHHHHHh
Q 007247 496 AMR-----YGTVPIVASTGG----LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (611)
Q Consensus 496 Ama-----~G~PvI~s~~gg----~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~~la~~i~~ll~~ 552 (611)
.+. ..+|+|+-.... ..+.+..|..+++. .|.+.+++.+.|.++++.
T Consensus 83 ~l~~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~----------kP~~~~~l~~~i~~~~~~ 138 (149)
T 1k66_A 83 EIKQDEVLKKIPVVIMTTSSNPKDIEICYSYSISSYIV----------KPLEIDRLTETVQTFIKY 138 (149)
T ss_dssp HHTTSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEE----------CCSSHHHHHHHHHHHHHH
T ss_pred HHHhCcccCCCeEEEEeCCCCHHHHHHHHHCCCCEEEe----------CCCCHHHHHHHHHHHHHH
Confidence 776 356766543222 23344567788887 899999999999998864
No 140
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=40.33 E-value=1.5e+02 Score=24.22 Aligned_cols=108 Identities=14% Similarity=0.111 Sum_probs=65.4
Q ss_pred cEEEEEeCCCchhHHHHHHHHHHCCCceEEecccChHHHHHHHH--HccEEEeCCCC-CCCcHHHHHHHHc-----CCce
Q 007247 432 VQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMRY-----GTVP 503 (611)
Q Consensus 432 ~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~i~~--~aDv~l~pS~~-E~~gl~~lEAma~-----G~Pv 503 (611)
.+++|+.+.+ ...+.+..+....+-.+. ..-+....-..+. ..|++++-... +.-|+-+++.+.. .+|+
T Consensus 5 ~~iLivdd~~-~~~~~l~~~L~~~g~~v~--~~~~~~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~lr~~~~~~~~pi 81 (136)
T 3t6k_A 5 HTLLIVDDDD-TVAEMLELVLRGAGYEVR--RAASGEEALQQIYKNLPDALICDVLLPGIDGYTLCKRVRQHPLTKTLPI 81 (136)
T ss_dssp CEEEEECSCH-HHHHHHHHHHHHTTCEEE--EESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHSGGGTTCCE
T ss_pred CEEEEEeCCH-HHHHHHHHHHHHCCCEEE--EeCCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHcCCCcCCccE
Confidence 4566666543 345555555555442232 2224444333443 35888875544 4457777777753 5677
Q ss_pred EEcCC-cc---cccceecCcceEEecccccccccCCccCHHHHHHHHHHHHHh
Q 007247 504 IVAST-GG---LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (611)
Q Consensus 504 I~s~~-gg---~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~~la~~i~~ll~~ 552 (611)
|.-.. +. ..+.+..|..+|+. .|-+.+++...|.+++..
T Consensus 82 i~~t~~~~~~~~~~~~~~ga~~~l~----------KP~~~~~L~~~i~~~l~~ 124 (136)
T 3t6k_A 82 LMLTAQGDISAKIAGFEAGANDYLA----------KPFEPQELVYRVKNILAR 124 (136)
T ss_dssp EEEECTTCHHHHHHHHHHTCSEEEE----------TTCCHHHHHHHHHHHHHC
T ss_pred EEEecCCCHHHHHHHHhcCcceEEe----------CCCCHHHHHHHHHHHHhc
Confidence 65433 22 22344567888987 999999999999999875
No 141
>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}
Probab=39.91 E-value=19 Score=34.78 Aligned_cols=35 Identities=34% Similarity=0.391 Sum_probs=24.9
Q ss_pred CCCceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEeec
Q 007247 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (611)
Q Consensus 82 ~~~MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~~ 127 (611)
|++|||++++ . |++| ..|++.|.++||+|.+++..
T Consensus 1 M~~~~ilVtG-a-------G~iG---~~l~~~L~~~g~~V~~~~r~ 35 (286)
T 3gpi_A 1 MSLSKILIAG-C-------GDLG---LELARRLTAQGHEVTGLRRS 35 (286)
T ss_dssp -CCCCEEEEC-C-------SHHH---HHHHHHHHHTTCCEEEEECT
T ss_pred CCCCcEEEEC-C-------CHHH---HHHHHHHHHCCCEEEEEeCC
Confidence 4567887665 1 4444 34788899999999999765
No 142
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=39.18 E-value=86 Score=26.04 Aligned_cols=67 Identities=19% Similarity=0.351 Sum_probs=44.3
Q ss_pred HccEEEeCCCC-CCCcHHHHHHHHc---CCceEEcCC-cc---cccceecCcceEEecccccccccCCccCHHHHHHHHH
Q 007247 476 GADFILIPSRF-EPCGLIQLHAMRY---GTVPIVAST-GG---LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVR 547 (611)
Q Consensus 476 ~aDv~l~pS~~-E~~gl~~lEAma~---G~PvI~s~~-gg---~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~~la~~i~ 547 (611)
..|++++-... +.-|+.+++.+.. .+|+|+-.. .. ..+.+..|..+++. .|-+.+++...|.
T Consensus 67 ~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~----------Kp~~~~~L~~~i~ 136 (146)
T 4dad_A 67 AFDILMIDGAALDTAELAAIEKLSRLHPGLTCLLVTTDASSQTLLDAMRAGVRDVLR----------WPLEPRALDDALK 136 (146)
T ss_dssp TCSEEEEECTTCCHHHHHHHHHHHHHCTTCEEEEEESCCCHHHHHHHHTTTEEEEEE----------SSCCHHHHHHHHH
T ss_pred CCCEEEEeCCCCCccHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHhCCceeEc----------CCCCHHHHHHHHH
Confidence 46777775543 3345666666543 567665432 22 23345567788887 8999999999999
Q ss_pred HHHHh
Q 007247 548 RALAT 552 (611)
Q Consensus 548 ~ll~~ 552 (611)
++++.
T Consensus 137 ~~~~~ 141 (146)
T 4dad_A 137 RAAAQ 141 (146)
T ss_dssp HHHHT
T ss_pred HHHhh
Confidence 98875
No 143
>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*
Probab=38.56 E-value=17 Score=36.03 Aligned_cols=38 Identities=29% Similarity=0.458 Sum_probs=27.1
Q ss_pred ccCCCceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEeec
Q 007247 80 VCGVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (611)
Q Consensus 80 ~~~~~MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~~ 127 (611)
...++|+|++.+. +|++| ..|++.|.++||+|.++...
T Consensus 16 ~~~~~~~vlVTGa-------sG~iG---~~l~~~L~~~g~~V~~~~r~ 53 (330)
T 2pzm_A 16 PRGSHMRILITGG-------AGCLG---SNLIEHWLPQGHEILVIDNF 53 (330)
T ss_dssp STTTCCEEEEETT-------TSHHH---HHHHHHHGGGTCEEEEEECC
T ss_pred ccCCCCEEEEECC-------CCHHH---HHHHHHHHHCCCEEEEEECC
Confidence 3455788776653 36666 45788899999999998754
No 144
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=38.38 E-value=29 Score=32.73 Aligned_cols=40 Identities=10% Similarity=0.094 Sum_probs=32.6
Q ss_pred CCceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEee
Q 007247 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAP 126 (611)
Q Consensus 83 ~~MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~ 126 (611)
.+||.+||+..- ..-|-..+...|+++|+++|++|..+=|
T Consensus 2 ~~mk~i~Itgt~----t~vGKT~vt~~L~~~l~~~G~~V~~~KP 41 (228)
T 3of5_A 2 NAMKKFFIIGTD----TEVGKTYISTKLIEVCEHQNIKSLCLKP 41 (228)
T ss_dssp TTCEEEEEEESS----SSSCHHHHHHHHHHHHHHTTCCEEEECS
T ss_pred CCCcEEEEEeCC----CCCCHHHHHHHHHHHHHHCCCeeEEecc
Confidence 468999998752 2457788899999999999999998754
No 145
>2e6c_A 5'-nucleotidase SURE; SURE protein, cowith manganese ION and AMP hydrolase; 2.05A {Thermus thermophilus} PDB: 2e6b_A 2e69_A 2e6e_A 2e6g_A 2e6h_A
Probab=38.32 E-value=19 Score=34.55 Aligned_cols=38 Identities=26% Similarity=0.320 Sum_probs=27.8
Q ss_pred ceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEeecCCc
Q 007247 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQ 130 (611)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~~~~~ 130 (611)
||||+.+.. .. ...-+..|+++|.+.| +|+|++|...+
T Consensus 1 M~ILlTNDD-Gi------~apGi~aL~~~l~~~g-~V~VVAP~~~~ 38 (244)
T 2e6c_A 1 MRILVTNDD-GI------YSPGLWALAEAASQFG-EVFVAAPDTEQ 38 (244)
T ss_dssp CEEEEECSS-CT------TCHHHHHHHHHHTTTS-EEEEEEECSSC
T ss_pred CeEEEEcCC-CC------CcHhHHHHHHHHHhCC-CEEEEecCCCC
Confidence 789888765 11 2233677889998888 99999998543
No 146
>3qvl_A Putative hydantoin racemase; isomerase; HET: 5HY; 1.82A {Klebsiella pneumoniae subsp} PDB: 3qvk_A* 3qvj_A
Probab=38.22 E-value=95 Score=29.55 Aligned_cols=39 Identities=21% Similarity=0.487 Sum_probs=23.5
Q ss_pred CceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEeec
Q 007247 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (611)
Q Consensus 84 ~MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~~ 127 (611)
.|||++|++. .+-.....+...++.++.-|.+|..+|+.
T Consensus 1 ~mrilvINPn-----ts~~~T~~i~~~~~~~~~p~~~i~~~t~~ 39 (245)
T 3qvl_A 1 SVRIQVINPN-----TSLAMTETIGAAARAVAAPGTEILAVCPR 39 (245)
T ss_dssp CEEEEEECSS-----CCHHHHHHHHHHHHHHCCTTEEEEEECCS
T ss_pred CCEEEEEeCC-----CCHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 3899999964 22334444455555555556666666654
No 147
>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*
Probab=37.82 E-value=19 Score=35.72 Aligned_cols=35 Identities=29% Similarity=0.327 Sum_probs=24.1
Q ss_pred CCceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEeec
Q 007247 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (611)
Q Consensus 83 ~~MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~~ 127 (611)
++|+|++.+. +|++| ..+++.|.++||+|.++...
T Consensus 2 ~~~~vlVtGa-------tG~iG---~~l~~~L~~~G~~V~~~~r~ 36 (345)
T 2z1m_A 2 SGKRALITGI-------RGQDG---AYLAKLLLEKGYEVYGADRR 36 (345)
T ss_dssp -CCEEEEETT-------TSHHH---HHHHHHHHHTTCEEEEECSC
T ss_pred CCCEEEEECC-------CChHH---HHHHHHHHHCCCEEEEEECC
Confidence 4577765543 35555 45788899999999988654
No 148
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=37.65 E-value=36 Score=32.77 Aligned_cols=41 Identities=24% Similarity=0.186 Sum_probs=33.7
Q ss_pred CCCceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEee
Q 007247 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAP 126 (611)
Q Consensus 82 ~~~MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~ 126 (611)
.+.||.+||+..- ..-|-..+...|+++|.++|++|..+=|
T Consensus 23 ~~~m~~i~Itgt~----t~vGKT~vt~gL~~~l~~~G~~V~~fKP 63 (251)
T 3fgn_A 23 QSHMTILVVTGTG----TGVGKTVVCAALASAARQAGIDVAVCKP 63 (251)
T ss_dssp CSSCEEEEEEESS----TTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred ccCCCEEEEEeCC----CCCcHHHHHHHHHHHHHHCCCeEEEEee
Confidence 4568999998751 2467888899999999999999999875
No 149
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=37.63 E-value=31 Score=31.68 Aligned_cols=39 Identities=21% Similarity=0.074 Sum_probs=32.1
Q ss_pred CceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEeec
Q 007247 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (611)
Q Consensus 84 ~MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~~ 127 (611)
.|||++|... | .|-...+...+++.+.+.|++|.++-..
T Consensus 6 mmkilii~~S--~---~g~T~~la~~i~~~l~~~g~~v~~~~l~ 44 (211)
T 1ydg_A 6 PVKLAIVFYS--S---TGTGYAMAQEAAEAGRAAGAEVRLLKVR 44 (211)
T ss_dssp CCEEEEEECC--S---SSHHHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CCeEEEEEEC--C---CChHHHHHHHHHHHHhcCCCEEEEEecc
Confidence 5899999853 4 5778888888999999999999998654
No 150
>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6
Probab=37.28 E-value=26 Score=35.19 Aligned_cols=35 Identities=20% Similarity=0.227 Sum_probs=24.6
Q ss_pred CCCceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEeec
Q 007247 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (611)
Q Consensus 82 ~~~MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~~ 127 (611)
|+.|||++|+. |..|. .++..|++.||+|+++...
T Consensus 2 m~~mki~iiG~--------G~~G~---~~a~~L~~~g~~V~~~~r~ 36 (359)
T 1bg6_A 2 IESKTYAVLGL--------GNGGH---AFAAYLALKGQSVLAWDID 36 (359)
T ss_dssp --CCEEEEECC--------SHHHH---HHHHHHHHTTCEEEEECSC
T ss_pred CCcCeEEEECC--------CHHHH---HHHHHHHhCCCEEEEEeCC
Confidence 45689999973 44443 3677889999999988643
No 151
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Probab=37.08 E-value=26 Score=30.03 Aligned_cols=38 Identities=21% Similarity=0.129 Sum_probs=30.4
Q ss_pred ceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEeec
Q 007247 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (611)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~~ 127 (611)
|||+++... + +|....+...++..+.+.|++|.++...
T Consensus 1 mki~iiy~S--~---~Gnt~~~a~~i~~~l~~~g~~v~~~~~~ 38 (147)
T 1f4p_A 1 PKALIVYGS--T---TGNTEYTAETIARELADAGYEVDSRDAA 38 (147)
T ss_dssp CEEEEEEEC--S---SSHHHHHHHHHHHHHHHHTCEEEEEEGG
T ss_pred CeEEEEEEC--C---cCHHHHHHHHHHHHHHhcCCeeEEEehh
Confidence 788888642 3 5888889999999999999999888543
No 152
>1j9j_A Stationary phase surviVal protein; SURE protein, unknown function; 1.90A {Thermotoga maritima} SCOP: c.106.1.1 PDB: 1ilv_A 1j9k_A* 1j9l_A*
Probab=36.85 E-value=21 Score=34.38 Aligned_cols=38 Identities=18% Similarity=0.271 Sum_probs=27.7
Q ss_pred ceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEeecCCc
Q 007247 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQ 130 (611)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~~~~~ 130 (611)
||||+.+.. .. ...-+..|+++|.+.| +|+|++|...+
T Consensus 1 M~ILlTNDD-Gi------~apGi~aL~~~l~~~g-~V~VVAP~~~~ 38 (247)
T 1j9j_A 1 MRILVTNDD-GI------QSKGIIVLAELLSEEH-EVFVVAPDKER 38 (247)
T ss_dssp CEEEEECSS-CT------TCHHHHHHHHHHTTTS-EEEEEEESSCC
T ss_pred CeEEEEcCC-CC------CcHhHHHHHHHHHhCC-CEEEEecCCCC
Confidence 789888765 11 2223667889998888 99999998543
No 153
>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}
Probab=36.14 E-value=21 Score=35.84 Aligned_cols=35 Identities=29% Similarity=0.320 Sum_probs=25.8
Q ss_pred CCCceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEeec
Q 007247 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (611)
Q Consensus 82 ~~~MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~~ 127 (611)
|+.|||++|+. |.+|. .++..|++.||+|+++...
T Consensus 1 M~~mkI~IiGa--------G~~G~---~~a~~L~~~g~~V~~~~r~ 35 (335)
T 3ghy_A 1 MSLTRICIVGA--------GAVGG---YLGARLALAGEAINVLARG 35 (335)
T ss_dssp -CCCCEEEESC--------CHHHH---HHHHHHHHTTCCEEEECCH
T ss_pred CCCCEEEEECc--------CHHHH---HHHHHHHHCCCEEEEEECh
Confidence 34689999984 44443 3677899999999999753
No 154
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=36.11 E-value=25 Score=33.70 Aligned_cols=37 Identities=22% Similarity=0.211 Sum_probs=27.4
Q ss_pred ceEEEEeeeecCcccccc--HHHHhccchHHHHhCCCeEEEEeec
Q 007247 85 LNILFVGTEVAPWSKTGG--LGDVLGGLPPALAANGHRVMTIAPR 127 (611)
Q Consensus 85 MkIl~v~~~~~P~~~~GG--~~~~~~~La~~L~~~Gh~V~vit~~ 127 (611)
|||+.|++. .|| -.....+||.+|+++|++|.++=..
T Consensus 18 ~~vI~v~s~------kGGvGKTT~a~nLA~~la~~G~~VlliD~D 56 (262)
T 2ph1_A 18 KSRIAVMSG------KGGVGKSTVTALLAVHYARQGKKVGILDAD 56 (262)
T ss_dssp SCEEEEECS------SSCTTHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CeEEEEEcC------CCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 566666542 354 4567888999999999999998654
No 155
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=35.73 E-value=1.7e+02 Score=23.38 Aligned_cols=106 Identities=14% Similarity=0.112 Sum_probs=63.8
Q ss_pred EEEEEeCCCchhHHHHHHHHHHCCCceEEecccChHHHHHHHH--HccEEEeCCCC-CCCcHHHHHHHHc-----CCceE
Q 007247 433 QIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMRY-----GTVPI 504 (611)
Q Consensus 433 ~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~i~~--~aDv~l~pS~~-E~~gl~~lEAma~-----G~PvI 504 (611)
+++|+.+.+ ...+.++.+....+-.+. ..-+....-..+. ..|++++-... +.-|+.+++.+.. .+|+|
T Consensus 4 ~ILivdd~~-~~~~~l~~~l~~~g~~v~--~~~~~~~al~~l~~~~~dlvllD~~~p~~~g~~~~~~l~~~~~~~~~pii 80 (122)
T 3gl9_A 4 KVLLVDDSA-VLRKIVSFNLKKEGYEVI--EAENGQIALEKLSEFTPDLIVLXIMMPVMDGFTVLKKLQEKEEWKRIPVI 80 (122)
T ss_dssp EEEEECSCH-HHHHHHHHHHHHTTCEEE--EESSHHHHHHHHTTBCCSEEEECSCCSSSCHHHHHHHHHTSTTTTTSCEE
T ss_pred eEEEEeCCH-HHHHHHHHHHHHCCcEEE--EeCCHHHHHHHHHhcCCCEEEEeccCCCCcHHHHHHHHHhcccccCCCEE
Confidence 456666543 344555555554442232 2234444444444 35888775543 4567888888753 57766
Q ss_pred EcC-Ccc---cccceecCcceEEecccccccccCCccCHHHHHHHHHHHHH
Q 007247 505 VAS-TGG---LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALA 551 (611)
Q Consensus 505 ~s~-~gg---~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~~la~~i~~ll~ 551 (611)
.-. .+. ..+....|..+|+. .|-+.+++...|.++++
T Consensus 81 ~~s~~~~~~~~~~~~~~Ga~~~l~----------KP~~~~~L~~~i~~~l~ 121 (122)
T 3gl9_A 81 VLTAKGGEEDESLALSLGARKVMR----------KPFSPSQFIEEVKHLLN 121 (122)
T ss_dssp EEESCCSHHHHHHHHHTTCSEEEE----------SSCCHHHHHHHHHHHHC
T ss_pred EEecCCchHHHHHHHhcChhhhcc----------CCCCHHHHHHHHHHHhc
Confidence 543 332 22234567888987 89999999999998874
No 156
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Probab=35.50 E-value=21 Score=35.65 Aligned_cols=36 Identities=19% Similarity=0.182 Sum_probs=24.9
Q ss_pred CCCceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEeec
Q 007247 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (611)
Q Consensus 82 ~~~MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~~ 127 (611)
|.+|+|++++. +|++|. .++++|.+.||+|.+++..
T Consensus 8 M~~~~IlVtGa-------tG~iG~---~l~~~L~~~g~~V~~l~R~ 43 (346)
T 3i6i_A 8 SPKGRVLIAGA-------TGFIGQ---FVATASLDAHRPTYILARP 43 (346)
T ss_dssp ---CCEEEECT-------TSHHHH---HHHHHHHHTTCCEEEEECS
T ss_pred CCCCeEEEECC-------CcHHHH---HHHHHHHHCCCCEEEEECC
Confidence 44678887764 355664 4677899999999999865
No 157
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=34.45 E-value=21 Score=33.41 Aligned_cols=35 Identities=17% Similarity=0.345 Sum_probs=27.5
Q ss_pred ceEEEEeeeecCcccccc--HHHHhccchHHHHhCCCeEEEEeec
Q 007247 85 LNILFVGTEVAPWSKTGG--LGDVLGGLPPALAANGHRVMTIAPR 127 (611)
Q Consensus 85 MkIl~v~~~~~P~~~~GG--~~~~~~~La~~L~~~Gh~V~vit~~ 127 (611)
|||++ +. .|| -.....+||..|+++|++|.+|=..
T Consensus 1 mkI~v-s~-------kGGvGKTt~a~~LA~~la~~g~~VlliD~D 37 (254)
T 3kjh_A 1 MKLAV-AG-------KGGVGKTTVAAGLIKIMASDYDKIYAVDGD 37 (254)
T ss_dssp CEEEE-EC-------SSSHHHHHHHHHHHHHHTTTCSCEEEEEEC
T ss_pred CEEEE-ec-------CCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 78888 53 244 5567778999999999999999655
No 158
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=34.44 E-value=1.9e+02 Score=23.58 Aligned_cols=108 Identities=13% Similarity=0.147 Sum_probs=62.3
Q ss_pred CcEEEEEeCCCchhHHHHHHHHHHCCCceEEecccChHHHHHHHH--HccEEEeCCCC-CCCcHHHHHHHH---cCCceE
Q 007247 431 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMR---YGTVPI 504 (611)
Q Consensus 431 ~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~i~~--~aDv~l~pS~~-E~~gl~~lEAma---~G~PvI 504 (611)
..+++|+.+.. ...+.++......+-.+. ..-+.......+. ..|++++-. . +.-|+.+++.+. ..+|+|
T Consensus 4 ~~~iLivdd~~-~~~~~l~~~L~~~g~~v~--~~~~~~~a~~~l~~~~~dlvi~d~-~~~~~g~~~~~~l~~~~~~~pii 79 (142)
T 2qxy_A 4 TPTVMVVDESR-ITFLAVKNALEKDGFNVI--WAKNEQEAFTFLRREKIDLVFVDV-FEGEESLNLIRRIREEFPDTKVA 79 (142)
T ss_dssp CCEEEEECSCH-HHHHHHHHHHGGGTCEEE--EESSHHHHHHHHTTSCCSEEEEEC-TTTHHHHHHHHHHHHHCTTCEEE
T ss_pred CCeEEEEeCCH-HHHHHHHHHHHhCCCEEE--EECCHHHHHHHHhccCCCEEEEeC-CCCCcHHHHHHHHHHHCCCCCEE
Confidence 35667776543 344555555444432232 2223333333443 358877765 4 234555666554 357766
Q ss_pred EcC-Ccc---cccceecCcceEEecccccccccCCccCHHHHHHHHHHHHHh
Q 007247 505 VAS-TGG---LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (611)
Q Consensus 505 ~s~-~gg---~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~~la~~i~~ll~~ 552 (611)
+-. ... ..+.+..|..+++. .|.+.+++...|.+++..
T Consensus 80 ~ls~~~~~~~~~~~~~~g~~~~l~----------kP~~~~~l~~~i~~~~~~ 121 (142)
T 2qxy_A 80 VLSAYVDKDLIINSVKAGAVDYIL----------KPFRLDYLLERVKKIISS 121 (142)
T ss_dssp EEESCCCHHHHHHHHHHTCSCEEE----------SSCCHHHHHHHHHHHHHC
T ss_pred EEECCCCHHHHHHHHHCCcceeEe----------CCCCHHHHHHHHHHHHhh
Confidence 543 222 23344557788886 899999999999999875
No 159
>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}
Probab=34.35 E-value=26 Score=32.91 Aligned_cols=25 Identities=36% Similarity=0.590 Sum_probs=18.8
Q ss_pred cccHHHHhccchHHHHhCCCeEEEEeec
Q 007247 100 TGGLGDVLGGLPPALAANGHRVMTIAPR 127 (611)
Q Consensus 100 ~GG~~~~~~~La~~L~~~Gh~V~vit~~ 127 (611)
.||+| ..+++.|+++||+|.++...
T Consensus 10 sg~iG---~~l~~~L~~~g~~V~~~~r~ 34 (255)
T 2dkn_A 10 ASGIG---AALKELLARAGHTVIGIDRG 34 (255)
T ss_dssp TSHHH---HHHHHHHHHTTCEEEEEESS
T ss_pred CcHHH---HHHHHHHHhCCCEEEEEeCC
Confidence 35555 45788899999999988644
No 160
>1l5x_A SurviVal protein E; structural genomics, putative acid phosphatase, mixed alpha/ protein, N-terminal rossmann-fold like; 2.00A {Pyrobaculum aerophilum} SCOP: c.106.1.1
Probab=34.17 E-value=23 Score=34.73 Aligned_cols=38 Identities=21% Similarity=0.176 Sum_probs=27.7
Q ss_pred ceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEeecCCc
Q 007247 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQ 130 (611)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~~~~~ 130 (611)
||||+.+.. .. ...-+..|+++|.+.| +|+|++|...+
T Consensus 1 M~ILlTNDD-Gi------~ApGi~aL~~aL~~~g-~V~VVAP~~~q 38 (280)
T 1l5x_A 1 MKILVTNDD-GV------HSPGLRLLYQFALSLG-DVDVVAPESPK 38 (280)
T ss_dssp CEEEEECSS-CT------TCHHHHHHHHHHGGGS-EEEEEEESSCT
T ss_pred CeEEEEcCC-CC------CcHhHHHHHHHHHhCC-CEEEEecCCCC
Confidence 899888765 11 2223667889998888 99999998543
No 161
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=34.10 E-value=33 Score=31.26 Aligned_cols=40 Identities=13% Similarity=0.061 Sum_probs=30.5
Q ss_pred ceEEEEeeeecCccccccHHHHhccchHH-HHhCCCeEEEEeec
Q 007247 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPA-LAANGHRVMTIAPR 127 (611)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~La~~-L~~~Gh~V~vit~~ 127 (611)
|||++|... |. +.|-...+...++.. |.+.|++|.++-..
T Consensus 3 mkilii~gS--~r-~~g~t~~la~~i~~~~l~~~g~~v~~~dl~ 43 (197)
T 2vzf_A 3 YSIVAISGS--PS-RNSTTAKLAEYALAHVLARSDSQGRHIHVI 43 (197)
T ss_dssp EEEEEEECC--SS-TTCHHHHHHHHHHHHHHHHSSEEEEEEEGG
T ss_pred ceEEEEECC--CC-CCChHHHHHHHHHHHHHHHCCCeEEEEEcc
Confidence 799999864 43 345577777778888 88899999988643
No 162
>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*
Probab=34.06 E-value=27 Score=33.07 Aligned_cols=34 Identities=26% Similarity=0.524 Sum_probs=24.1
Q ss_pred ceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEeec
Q 007247 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (611)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~~ 127 (611)
||.++|+.- .||+| ..+++.|+++|++|.++..+
T Consensus 1 mk~vlVTGa------s~gIG---~~~a~~l~~~G~~V~~~~r~ 34 (257)
T 1fjh_A 1 MSIIVISGC------ATGIG---AATRKVLEAAGHQIVGIDIR 34 (257)
T ss_dssp CCEEEEETT------TSHHH---HHHHHHHHHTTCEEEEEESS
T ss_pred CCEEEEeCC------CCHHH---HHHHHHHHHCCCEEEEEeCC
Confidence 666666631 45665 45788899999999888644
No 163
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=33.84 E-value=35 Score=32.76 Aligned_cols=42 Identities=14% Similarity=-0.028 Sum_probs=29.9
Q ss_pred CCceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEeec
Q 007247 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (611)
Q Consensus 83 ~~MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~~ 127 (611)
..|||++|... |. +.|-...++..++..+.+.|++|.++-..
T Consensus 33 ~~mkIliI~GS--~r-~~s~t~~La~~~~~~l~~~g~eve~idL~ 74 (247)
T 2q62_A 33 HRPRILILYGS--LR-TVSYSRLLAEEARRLLEFFGAEVKVFDPS 74 (247)
T ss_dssp SCCEEEEEECC--CC-SSCHHHHHHHHHHHHHHHTTCEEEECCCT
T ss_pred CCCeEEEEEcc--CC-CCCHHHHHHHHHHHHHhhCCCEEEEEEhh
Confidence 45899999975 53 23334556666788888889999988643
No 164
>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus}
Probab=33.64 E-value=1.4e+02 Score=29.72 Aligned_cols=85 Identities=8% Similarity=0.046 Sum_probs=54.3
Q ss_pred HHHHHHhCCCCCCCCcEEEEEcCcccccCHHHHHHHHHhcccCCcEEEEEeCCC----chhHHHHHHHHHHCCCceEEec
Q 007247 388 EALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGK----KPMEKQLEQLEILYPEKARGVA 463 (611)
Q Consensus 388 ~~~~~~~gl~~~~~~~~il~iGrl~~~Kg~d~li~a~~~l~~~~~~lvivG~g~----~~~~~~l~~l~~~~~~~v~~~~ 463 (611)
-.+++.+|-- +...|.|+|-+ ..=..-++.++..+ ++++.++++.. +++.+.+++.+.+.+.++...-
T Consensus 146 ~Ti~e~~g~l---~glkva~vGD~--~rva~Sl~~~~~~~---G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~v~~~~ 217 (323)
T 3gd5_A 146 LTIRENFGRL---AGLKLAYVGDG--NNVAHSLLLGCAKV---GMSIAVATPEGFTPDPAVSARASEIAGRTGAEVQILR 217 (323)
T ss_dssp HHHHHHHSCC---TTCEEEEESCC--CHHHHHHHHHHHHH---TCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEES
T ss_pred HHHHHHhCCC---CCCEEEEECCC--CcHHHHHHHHHHHc---CCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEEEC
Confidence 3566777732 34689999998 22256677777776 78999999843 2344555555555554444321
Q ss_pred ccChHHHHHHHHHccEEEeCCC
Q 007247 464 KFNIPLAHMIIAGADFILIPSR 485 (611)
Q Consensus 464 ~~~~~~~~~i~~~aDv~l~pS~ 485 (611)
.+.+.+.+||++.....
T Consensus 218 -----d~~eav~~aDvvyt~~w 234 (323)
T 3gd5_A 218 -----DPFEAARGAHILYTDVW 234 (323)
T ss_dssp -----CHHHHHTTCSEEEECCC
T ss_pred -----CHHHHhcCCCEEEEece
Confidence 23457899998877654
No 165
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=33.54 E-value=1.9e+02 Score=23.47 Aligned_cols=111 Identities=7% Similarity=0.011 Sum_probs=67.3
Q ss_pred CcEEEEEeCCCchhHHHHHHHHHHCCCceEEecccChHHHHHHHHH-------ccEEEeCCCC-CCCcHHHHHHHHc---
Q 007247 431 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAG-------ADFILIPSRF-EPCGLIQLHAMRY--- 499 (611)
Q Consensus 431 ~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~i~~~-------aDv~l~pS~~-E~~gl~~lEAma~--- 499 (611)
..+++|+.+.. .....++.+....+........-+.......+.. .|++++-... +.-|+.+++.+..
T Consensus 9 ~~~iLivdd~~-~~~~~l~~~l~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~ 87 (146)
T 3ilh_A 9 IDSVLLIDDDD-IVNFLNTTIIRMTHRVEEIQSVTSGNAAINKLNELYAAGRWPSIICIDINMPGINGWELIDLFKQHFQ 87 (146)
T ss_dssp EEEEEEECSCH-HHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHTSSCCCSEEEEESSCSSSCHHHHHHHHHHHCG
T ss_pred cceEEEEeCCH-HHHHHHHHHHHhcCCCeeeeecCCHHHHHHHHHHhhccCCCCCEEEEcCCCCCCCHHHHHHHHHHhhh
Confidence 35677777553 3455566655554431122222244444455554 6888876554 4567777777654
Q ss_pred ----CCceEEcCCcc----cccceecC-cceEEecccccccccCCccCHHHHHHHHHHHHHh
Q 007247 500 ----GTVPIVASTGG----LVDTVEEG-FTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (611)
Q Consensus 500 ----G~PvI~s~~gg----~~e~v~~g-~~G~l~~~~~~~~~~v~~~d~~~la~~i~~ll~~ 552 (611)
.+|+|...... ..+....| ..+++. .|-+.+++.++|.+....
T Consensus 88 ~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~~l~----------KP~~~~~L~~~i~~~~~~ 139 (146)
T 3ilh_A 88 PMKNKSIVCLLSSSLDPRDQAKAEASDWVDYYVS----------KPLTANALNNLYNKVLNE 139 (146)
T ss_dssp GGTTTCEEEEECSSCCHHHHHHHHHCSSCCEEEC----------SSCCHHHHHHHHHHHHCC
T ss_pred hccCCCeEEEEeCCCChHHHHHHHhcCCcceeee----------CCCCHHHHHHHHHHHHHh
Confidence 56666544332 22334445 677876 899999999999998875
No 166
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=33.52 E-value=35 Score=32.08 Aligned_cols=42 Identities=19% Similarity=0.191 Sum_probs=27.8
Q ss_pred CceEEEEeeeecCcc--ccccHH-HHhccchHHHHhCCCeEEEEeec
Q 007247 84 GLNILFVGTEVAPWS--KTGGLG-DVLGGLPPALAANGHRVMTIAPR 127 (611)
Q Consensus 84 ~MkIl~v~~~~~P~~--~~GG~~-~~~~~La~~L~~~Gh~V~vit~~ 127 (611)
.|||++|... |.. ..++.. ..+..+...+.+.||+|.++-..
T Consensus 25 M~kiLiI~gs--p~~~~s~~s~n~~L~~~~~~~l~~~g~ev~~~dL~ 69 (218)
T 3rpe_A 25 MSNVLIINAM--KEFAHSKGALNLTLTNVAADFLRESGHQVKITTVD 69 (218)
T ss_dssp CCCEEEEECC--CCBTTBCSHHHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred CcceEEEEeC--CCcccCCChHHHHHHHHHHHHHhhCCCEEEEEECC
Confidence 3689999874 531 123433 44455666777899999998764
No 167
>2v4n_A Multifunctional protein SUR E; hydrolase, surviVal protein, stationary phase, phosph mononucleotidase, divalent metal ION; 1.7A {Salmonella typhimurium} PDB: 2v4o_A
Probab=33.32 E-value=27 Score=33.77 Aligned_cols=39 Identities=21% Similarity=0.286 Sum_probs=27.9
Q ss_pred CceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEeecCCc
Q 007247 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQ 130 (611)
Q Consensus 84 ~MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~~~~~ 130 (611)
.||||+.+.. .. ...-+..|+++|.+.| +|+|++|...+
T Consensus 1 ~M~ILlTNDD-Gi------~apGi~aL~~~L~~~g-~V~VVAP~~~~ 39 (254)
T 2v4n_A 1 SMRILLSNDD-GV------HAPGIQTLAKALREFA-DVQVVAPDRNR 39 (254)
T ss_dssp CCEEEEECSS-CT------TCHHHHHHHHHHTTTS-EEEEEEESSCC
T ss_pred CCeEEEEcCC-CC------CCHHHHHHHHHHHhCC-cEEEEeeCCCC
Confidence 4899988865 12 2224667888888876 99999998543
No 168
>1xv5_A AGT, DNA alpha-glucosyltransferase; HET: DNA CME UDP; 1.73A {Enterobacteria phage T4} PDB: 1y6f_A* 1y6g_A* 1ya6_A* 1y8z_A*
Probab=33.17 E-value=3e+02 Score=25.47 Aligned_cols=146 Identities=16% Similarity=0.169 Sum_probs=84.5
Q ss_pred EEEEEcCcccccCHHHHHHHHHhcccC-CcEEEEEeCCCchhHHHHHHHHHH--------------CCCc-eEEecccCh
Q 007247 404 VIGFIGRLEEQKGSDILAAAIPHFIKE-NVQIIVLGTGKKPMEKQLEQLEIL--------------YPEK-ARGVAKFNI 467 (611)
Q Consensus 404 ~il~iGrl~~~Kg~d~li~a~~~l~~~-~~~lvivG~g~~~~~~~l~~l~~~--------------~~~~-v~~~~~~~~ 467 (611)
+=-++||-..+||.-.+.+--+++.+| .-.-++-|-....-.-.+++.... .|+. ....--+-.
T Consensus 199 inrwigrtttwkgfyqmfdfhekflkpagkstvmeglerspafiaikekgipyeyygnreidkmnlapnqpaqildcyin 278 (401)
T 1xv5_A 199 INRWIGRTTTWKGFYQMFDFHEKFLKPAGKSTVMEGLERSPAFIAIKEKGIPYEYYGNREIDKMNLAPNQPAQILDCYIN 278 (401)
T ss_dssp EEEEECCSCGGGCHHHHHHHHHHTTTTTTCEEEEECCCCSHHHHHHHHTTCCEEEECGGGGGGCCCSSSCCEEEESCCCH
T ss_pred hhhhhcccchhHhHHHHhhHHHHhcCccchhhhhhhhhcCCceEEEcccCCchhhcCcchhhhhcCCCCCcchhhhheec
Confidence 446899999999999999999999885 344455554321111111111100 0111 111111222
Q ss_pred HHHHHHHHHccEEEeCCCC------CCCcHHHHHHHHcCCceEEcC-Ccccccc------eecCcceEEecccccccccC
Q 007247 468 PLAHMIIAGADFILIPSRF------EPCGLIQLHAMRYGTVPIVAS-TGGLVDT------VEEGFTGFQMGSFSVDCEAV 534 (611)
Q Consensus 468 ~~~~~i~~~aDv~l~pS~~------E~~gl~~lEAma~G~PvI~s~-~gg~~e~------v~~g~~G~l~~~~~~~~~~v 534 (611)
..+-+-+..+.+...-|.. -..-..-+|--+||+.+|--. +|..-.. +.....|++ ++
T Consensus 279 semlermsksgfgyqlsklnqkylqrsleythlelgacgtipvfwkstgenlkfrvdntpltshdsgii---------wf 349 (401)
T 1xv5_A 279 SEMLERMSKSGFGYQLSKLNQKYLQRSLEYTHLELGACGTIPVFWKSTGENLKFRVDNTPLTSHDSGII---------WF 349 (401)
T ss_dssp HHHHHHHHTEEEEEECCCCCGGGCSSCCCHHHHHHHHHTSEEEEEHHHHHHSBCTTTCCBGGGSCCSCE---------EE
T ss_pred HHHHHHhhhcCcccchHHHHHHHHHhhhhhheeecccccceeeeecccCcceEEEecCCcccccCCceE---------Ee
Confidence 2333467777777766642 345678999999999777654 3321111 112334554 35
Q ss_pred CccCHHHHHHHHHHHHHhcCHHHHHH
Q 007247 535 DPVDVAAVSTTVRRALATYGTQALAE 560 (611)
Q Consensus 535 ~~~d~~~la~~i~~ll~~~~~~~~~~ 560 (611)
+.+|.+.--+.|+++-.+ ...+.+
T Consensus 350 dendmestferikelssd--ralydr 373 (401)
T 1xv5_A 350 DENDMESTFERIKELSSD--RALYDR 373 (401)
T ss_dssp CTTCHHHHHHHHHHHHTC--HHHHHH
T ss_pred cCCchHHHHHHHHHhccc--hhhhhH
Confidence 999999998999888776 444433
No 169
>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}
Probab=33.10 E-value=20 Score=36.11 Aligned_cols=39 Identities=15% Similarity=0.202 Sum_probs=25.2
Q ss_pred cccCCCceEEEEeeeecCccccccHHHHhccchHHHHhC-CCeEEEEeec
Q 007247 79 IVCGVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAAN-GHRVMTIAPR 127 (611)
Q Consensus 79 ~~~~~~MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~-Gh~V~vit~~ 127 (611)
+..|++|||++++. +|.+| ..|++.|.++ ||+|.++...
T Consensus 19 ~~~m~~~~vlVtGa-------tG~iG---~~l~~~L~~~~g~~V~~~~r~ 58 (372)
T 3slg_A 19 PGSMKAKKVLILGV-------NGFIG---HHLSKRILETTDWEVFGMDMQ 58 (372)
T ss_dssp ----CCCEEEEESC-------SSHHH---HHHHHHHHHHSSCEEEEEESC
T ss_pred CcccCCCEEEEECC-------CChHH---HHHHHHHHhCCCCEEEEEeCC
Confidence 34455678776553 35555 4577888887 9999999855
No 170
>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}
Probab=32.90 E-value=27 Score=32.62 Aligned_cols=35 Identities=14% Similarity=0.189 Sum_probs=25.2
Q ss_pred CCCceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEeec
Q 007247 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (611)
Q Consensus 82 ~~~MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~~ 127 (611)
|+.|||++|.. |. +-..++..|++.||+|+++..+
T Consensus 21 m~mmkI~IIG~--------G~---mG~~la~~l~~~g~~V~~v~~r 55 (220)
T 4huj_A 21 QSMTTYAIIGA--------GA---IGSALAERFTAAQIPAIIANSR 55 (220)
T ss_dssp GGSCCEEEEEC--------HH---HHHHHHHHHHHTTCCEEEECTT
T ss_pred hcCCEEEEECC--------CH---HHHHHHHHHHhCCCEEEEEECC
Confidence 44689999983 33 3345788899999999985433
No 171
>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*
Probab=32.89 E-value=26 Score=34.86 Aligned_cols=40 Identities=25% Similarity=0.271 Sum_probs=24.3
Q ss_pred ccccCCCceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEeec
Q 007247 78 MIVCGVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (611)
Q Consensus 78 ~~~~~~~MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~~ 127 (611)
....+++|+|++.+. +|++| ..|++.|.++||+|.++...
T Consensus 21 ~~~~~~~~~vlVtGa-------tG~iG---~~l~~~L~~~g~~V~~~~r~ 60 (343)
T 2b69_A 21 GHMEKDRKRILITGG-------AGFVG---SHLTDKLMMDGHEVTVVDNF 60 (343)
T ss_dssp ------CCEEEEETT-------TSHHH---HHHHHHHHHTTCEEEEEECC
T ss_pred cccccCCCEEEEEcC-------ccHHH---HHHHHHHHHCCCEEEEEeCC
Confidence 334455677765543 35555 45778899999999998754
No 172
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=32.74 E-value=3e+02 Score=26.49 Aligned_cols=118 Identities=10% Similarity=0.008 Sum_probs=70.0
Q ss_pred CcEEEEEcCcc--cccCHHHHHHHHHhcccCCcEEEEEeCCCchhHHHHHHHHHHCCCceEEeccc--ChHHHHHHHHHc
Q 007247 402 IPVIGFIGRLE--EQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKF--NIPLAHMIIAGA 477 (611)
Q Consensus 402 ~~~il~iGrl~--~~Kg~d~li~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~--~~~~~~~i~~~a 477 (611)
.|+++ .+-.+ .+.|.+.+++.+.+. .+.-+|+.+-+.+-.+.+.+...+++....+++.. +.+.+..+.+.+
T Consensus 98 ~Pivl-m~Y~n~v~~~g~~~f~~~~~~a---GvdGvIipDlp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~~ 173 (271)
T 3nav_A 98 TPIGL-LMYANLVYARGIDDFYQRCQKA---GVDSVLIADVPTNESQPFVAAAEKFGIQPIFIAPPTASDETLRAVAQLG 173 (271)
T ss_dssp SCEEE-EECHHHHHHTCHHHHHHHHHHH---TCCEEEETTSCGGGCHHHHHHHHHTTCEEEEEECTTCCHHHHHHHHHHC
T ss_pred CCEEE-EecCcHHHHHhHHHHHHHHHHC---CCCEEEECCCCHHHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHHC
Confidence 35554 45444 467999999988886 77888888877544555666667776555555544 346666777777
Q ss_pred cEEEe-CCCCC------CCcHHHHHHHH-----cCCceEEcCCccc--cc----ceecCcceEEec
Q 007247 478 DFILI-PSRFE------PCGLIQLHAMR-----YGTVPIVASTGGL--VD----TVEEGFTGFQMG 525 (611)
Q Consensus 478 Dv~l~-pS~~E------~~gl~~lEAma-----~G~PvI~s~~gg~--~e----~v~~g~~G~l~~ 525 (611)
+-|++ -|... .++..+.|.+. ..+|+++ .+|+ +| .+..+-.|.++|
T Consensus 174 ~gfiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~~~Pv~v--GfGIst~e~~~~~~~~gADgvIVG 237 (271)
T 3nav_A 174 KGYTYLLSRAGVTGAETKANMPVHALLERLQQFDAPPALL--GFGISEPAQVKQAIEAGAAGAISG 237 (271)
T ss_dssp CSCEEECCCC--------CCHHHHHHHHHHHHTTCCCEEE--CSSCCSHHHHHHHHHTTCSEEEES
T ss_pred CCeEEEEeccCCCCcccCCchhHHHHHHHHHHhcCCCEEE--ECCCCCHHHHHHHHHcCCCEEEEC
Confidence 43343 34431 23333333332 3688887 3333 23 444677888886
No 173
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=32.65 E-value=61 Score=30.29 Aligned_cols=34 Identities=15% Similarity=0.149 Sum_probs=22.8
Q ss_pred ceEEEEeeeecCccccccHHHHhccchHHHHhCCC--eEEEEeec
Q 007247 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGH--RVMTIAPR 127 (611)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh--~V~vit~~ 127 (611)
|||+|+.+- .+.....+..+|.+.+| +|..|..+
T Consensus 2 ~rI~vl~SG---------~g~~~~~~l~~l~~~~~~~~i~~Vvs~ 37 (216)
T 2ywr_A 2 LKIGVLVSG---------RGSNLQAIIDAIESGKVNASIELVISD 37 (216)
T ss_dssp EEEEEEECS---------CCHHHHHHHHHHHTTSSCEEEEEEEES
T ss_pred CEEEEEEeC---------CcHHHHHHHHHHHhCCCCCeEEEEEeC
Confidence 689988642 23456778888888888 66555444
No 174
>3q0i_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 1.89A {Vibrio cholerae}
Probab=32.42 E-value=31 Score=34.55 Aligned_cols=35 Identities=26% Similarity=0.420 Sum_probs=23.5
Q ss_pred CCCceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEeec
Q 007247 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (611)
Q Consensus 82 ~~~MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~~ 127 (611)
|++|||+|+++ |. +.....++|.+.||+|..|..+
T Consensus 5 ~~~mrivf~Gt---~~--------fa~~~L~~L~~~~~~v~~Vvt~ 39 (318)
T 3q0i_A 5 SQSLRIVFAGT---PD--------FAARHLAALLSSEHEIIAVYTQ 39 (318)
T ss_dssp --CCEEEEECC---SH--------HHHHHHHHHHTSSSEEEEEECC
T ss_pred ccCCEEEEEec---CH--------HHHHHHHHHHHCCCcEEEEEcC
Confidence 56899999985 32 2233457777889999877665
No 175
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=32.35 E-value=1.3e+02 Score=26.27 Aligned_cols=109 Identities=13% Similarity=0.181 Sum_probs=65.9
Q ss_pred CcEEEEEeCCCchhHHHHHHHHHHCCCceEEecccChHHHHHHHHH--ccEEEeCCCC-CCCcHHHHHHHHc---CCceE
Q 007247 431 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAG--ADFILIPSRF-EPCGLIQLHAMRY---GTVPI 504 (611)
Q Consensus 431 ~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~i~~~--aDv~l~pS~~-E~~gl~~lEAma~---G~PvI 504 (611)
..+++|+.+.+ ...+.+..+....+-.+ ...-+....-..+.. .|++++-... +.-|+-+++.+.. .+|+|
T Consensus 7 ~~~iLivdd~~-~~~~~l~~~L~~~g~~v--~~~~~~~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii 83 (184)
T 3rqi_A 7 DKNFLVIDDNE-VFAGTLARGLERRGYAV--RQAHNKDEALKLAGAEKFEFITVXLHLGNDSGLSLIAPLCDLQPDARIL 83 (184)
T ss_dssp CCEEEEECSCH-HHHHHHHHHHHHTTCEE--EEECSHHHHHHHHTTSCCSEEEECSEETTEESHHHHHHHHHHCTTCEEE
T ss_pred CCeEEEEcCCH-HHHHHHHHHHHHCCCEE--EEeCCHHHHHHHHhhCCCCEEEEeccCCCccHHHHHHHHHhcCCCCCEE
Confidence 45677776544 34555555555544222 222344444444433 5877765443 3457777776653 67776
Q ss_pred EcC-Ccc---cccceecCcceEEecccccccccCCccCHHHHHHHHHHHHHh
Q 007247 505 VAS-TGG---LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (611)
Q Consensus 505 ~s~-~gg---~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~~la~~i~~ll~~ 552 (611)
+-. ... ..+.+..|..+|+. .|-+.+++..+|..++..
T Consensus 84 ~lt~~~~~~~~~~a~~~Ga~~~l~----------KP~~~~~L~~~i~~~~~~ 125 (184)
T 3rqi_A 84 VLTGYASIATAVQAVKDGADNYLA----------KPANVESILAALQTNASE 125 (184)
T ss_dssp EEESSCCHHHHHHHHHHTCSEEEE----------SSCCHHHHHHHTSTTHHH
T ss_pred EEeCCCCHHHHHHHHHhCHHHhee----------CCCCHHHHHHHHHHHHHH
Confidence 643 322 23345568889987 899999999999988765
No 176
>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Bacillus cereus}
Probab=32.23 E-value=36 Score=31.73 Aligned_cols=37 Identities=24% Similarity=0.125 Sum_probs=28.4
Q ss_pred CCceEEEEeeeecCccccccHHHH--hccchHHHHhCCCeEEEEeec
Q 007247 83 VGLNILFVGTEVAPWSKTGGLGDV--LGGLPPALAANGHRVMTIAPR 127 (611)
Q Consensus 83 ~~MkIl~v~~~~~P~~~~GG~~~~--~~~La~~L~~~Gh~V~vit~~ 127 (611)
+++||++.. +||.+.+ ...|.+.|.+.|++|.++...
T Consensus 4 ~~k~Illgi--------TGsiaayk~~~~ll~~L~~~g~eV~vv~T~ 42 (207)
T 3mcu_A 4 KGKRIGFGF--------TGSHCTYEEVMPHLEKLIAEGAEVRPVVSY 42 (207)
T ss_dssp TTCEEEEEE--------CSCGGGGTTSHHHHHHHHHTTCEEEEEECC
T ss_pred CCCEEEEEE--------EChHHHHHHHHHHHHHHHhCCCEEEEEEeh
Confidence 356777655 3566656 678999999999999999765
No 177
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=32.19 E-value=35 Score=30.84 Aligned_cols=39 Identities=10% Similarity=0.180 Sum_probs=28.7
Q ss_pred ceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEeec
Q 007247 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (611)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~~ 127 (611)
|||+.|++.- ..-|-.....+|+..|+++|++|.++-..
T Consensus 1 M~vi~v~s~k----gG~GKTt~a~~la~~la~~g~~vlliD~D 39 (206)
T 4dzz_A 1 MKVISFLNPK----GGSGKTTAVINIATALSRSGYNIAVVDTD 39 (206)
T ss_dssp CEEEEECCSS----TTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CeEEEEEeCC----CCccHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 7777776531 12345667788999999999999999654
No 178
>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}
Probab=32.17 E-value=25 Score=35.87 Aligned_cols=36 Identities=17% Similarity=0.226 Sum_probs=25.1
Q ss_pred cCCCceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEeec
Q 007247 81 CGVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (611)
Q Consensus 81 ~~~~MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~~ 127 (611)
+++.|||.||.. |- +-..++..|++.||+|.++...
T Consensus 19 Mm~~mkIgiIGl--------G~---mG~~~A~~L~~~G~~V~v~dr~ 54 (358)
T 4e21_A 19 YFQSMQIGMIGL--------GR---MGADMVRRLRKGGHECVVYDLN 54 (358)
T ss_dssp ---CCEEEEECC--------SH---HHHHHHHHHHHTTCEEEEECSC
T ss_pred hhcCCEEEEECc--------hH---HHHHHHHHHHhCCCEEEEEeCC
Confidence 456799999973 22 3345789999999999988543
No 179
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=32.12 E-value=2.2e+02 Score=23.63 Aligned_cols=110 Identities=15% Similarity=0.223 Sum_probs=64.8
Q ss_pred CcEEEEEeCCCchhHHHHHHHHHHCCCceEEe-cccChHHHHHHHH--HccEEEeCCCC-CCCcHHHHHHHHc---CCce
Q 007247 431 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGV-AKFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMRY---GTVP 503 (611)
Q Consensus 431 ~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~-~~~~~~~~~~i~~--~aDv~l~pS~~-E~~gl~~lEAma~---G~Pv 503 (611)
..+++|+.+.+ ...+.++.+.....+ +... ...+.......+. ..|++++-... +.-|+.+++.+.. .+|+
T Consensus 5 ~~~ILivdd~~-~~~~~l~~~L~~~~~-~~v~~~~~~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~i 82 (153)
T 3cz5_A 5 TARIMLVDDHP-IVREGYRRLIERRPG-YAVVAEAADAGEAYRLYRETTPDIVVMDLTLPGPGGIEATRHIRQWDGAARI 82 (153)
T ss_dssp CEEEEEECSCH-HHHHHHHHHHTTSTT-EEEEEEESSHHHHHHHHHTTCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCE
T ss_pred ccEEEEECCcH-HHHHHHHHHHhhCCC-cEEEEEeCCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHHhCCCCeE
Confidence 45677777543 345555555444222 3322 2223343434443 35888875544 4456777776653 6776
Q ss_pred EEcC-Ccc---cccceecCcceEEecccccccccCCccCHHHHHHHHHHHHHh
Q 007247 504 IVAS-TGG---LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (611)
Q Consensus 504 I~s~-~gg---~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~~la~~i~~ll~~ 552 (611)
|+-. ... ..+.+..|..+++. .|.+.+++.+.|.+++..
T Consensus 83 i~ls~~~~~~~~~~~~~~g~~~~l~----------kp~~~~~L~~~i~~~~~~ 125 (153)
T 3cz5_A 83 LIFTMHQGSAFALKAFEAGASGYVT----------KSSDPAELVQAIEAILAG 125 (153)
T ss_dssp EEEESCCSHHHHHHHHHTTCSEEEE----------TTSCTTHHHHHHHHHTTT
T ss_pred EEEECCCCHHHHHHHHHCCCcEEEe----------cCCCHHHHHHHHHHHHhC
Confidence 6643 222 23344567788887 888999999999998875
No 180
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=32.05 E-value=1.9e+02 Score=22.89 Aligned_cols=106 Identities=19% Similarity=0.207 Sum_probs=62.1
Q ss_pred EEEEEeCCCchhHHHHHHHHHHCCCceEEecccChHHHHHHHH--HccEEEeCCCC-CCCcHHHHHHHH--cCCceEEcC
Q 007247 433 QIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMR--YGTVPIVAS 507 (611)
Q Consensus 433 ~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~i~~--~aDv~l~pS~~-E~~gl~~lEAma--~G~PvI~s~ 507 (611)
+++|+.+.+ ...+.++......+-.+. ..-+....-..+. ..|++++-... +.-|+.+++.+. ..+|+|.-.
T Consensus 4 ~ilivdd~~-~~~~~l~~~L~~~g~~v~--~~~~~~~al~~~~~~~~dlii~D~~~p~~~g~~~~~~lr~~~~~~ii~~t 80 (120)
T 3f6p_A 4 KILVVDDEK-PIADILEFNLRKEGYEVH--CAHDGNEAVEMVEELQPDLILLDIMLPNKDGVEVCREVRKKYDMPIIMLT 80 (120)
T ss_dssp EEEEECSCH-HHHHHHHHHHHHTTCEEE--EESSHHHHHHHHHTTCCSEEEEETTSTTTHHHHHHHHHHTTCCSCEEEEE
T ss_pred eEEEEECCH-HHHHHHHHHHHhCCEEEE--EeCCHHHHHHHHhhCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEEE
Confidence 566666543 344555554444442232 2224444434443 35887775543 345667776664 366766543
Q ss_pred Ccc----cccceecCcceEEecccccccccCCccCHHHHHHHHHHHHH
Q 007247 508 TGG----LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALA 551 (611)
Q Consensus 508 ~gg----~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~~la~~i~~ll~ 551 (611)
... ..+.+..|..+|+. .|-+.+++...|..++.
T Consensus 81 ~~~~~~~~~~~~~~ga~~~l~----------KP~~~~~l~~~i~~~l~ 118 (120)
T 3f6p_A 81 AKDSEIDKVIGLEIGADDYVT----------KPFSTRELLARVKANLR 118 (120)
T ss_dssp ESSCHHHHHHHHHTTCCEEEE----------ESCCHHHHHHHHHHHHT
T ss_pred CCCChHHHHHHHhCCcceeEc----------CCCCHHHHHHHHHHHHh
Confidence 222 22344567889987 89999999999988775
No 181
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=31.79 E-value=51 Score=27.21 Aligned_cols=44 Identities=14% Similarity=0.188 Sum_probs=29.8
Q ss_pred CCceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEeecCCccc
Q 007247 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYK 132 (611)
Q Consensus 83 ~~MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~~~~~~~ 132 (611)
+.|||+.++.. ....+.++..+-++..++|.+|.+.+..+.+..
T Consensus 5 ~~mkIlL~C~a------GmSTsllv~km~~~a~~~gi~v~i~a~~~~~~~ 48 (108)
T 3nbm_A 5 KELKVLVLCAG------SGTSAQLANAINEGANLTEVRVIANSGAYGAHY 48 (108)
T ss_dssp CCEEEEEEESS------SSHHHHHHHHHHHHHHHHTCSEEEEEEETTSCT
T ss_pred cCceEEEECCC------CCCHHHHHHHHHHHHHHCCCceEEEEcchHHHH
Confidence 47999999963 233444555566667778999999875554433
No 182
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=31.67 E-value=1.4e+02 Score=24.32 Aligned_cols=109 Identities=15% Similarity=0.122 Sum_probs=66.4
Q ss_pred CcEEEEEeCCCchhHHHHHHHHHH-CCCceEEecccChHHHHHHHHH---ccEEEeCCCCC--CCcHHHHHHHHc-----
Q 007247 431 NVQIIVLGTGKKPMEKQLEQLEIL-YPEKARGVAKFNIPLAHMIIAG---ADFILIPSRFE--PCGLIQLHAMRY----- 499 (611)
Q Consensus 431 ~~~lvivG~g~~~~~~~l~~l~~~-~~~~v~~~~~~~~~~~~~i~~~---aDv~l~pS~~E--~~gl~~lEAma~----- 499 (611)
..+++|+.+.. .....++.+... .+-.+. ..-+...+...+.. .|++++-.... .-|+.+++.+..
T Consensus 4 ~~~ilivdd~~-~~~~~l~~~L~~~~~~~v~--~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~ 80 (140)
T 3lua_A 4 DGTVLLIDYFE-YEREKTKIIFDNIGEYDFI--EVENLKKFYSIFKDLDSITLIIMDIAFPVEKEGLEVLSAIRNNSRTA 80 (140)
T ss_dssp CCEEEEECSCH-HHHHHHHHHHHHHCCCEEE--EECSHHHHHTTTTTCCCCSEEEECSCSSSHHHHHHHHHHHHHSGGGT
T ss_pred CCeEEEEeCCH-HHHHHHHHHHHhccCccEE--EECCHHHHHHHHhcCCCCcEEEEeCCCCCCCcHHHHHHHHHhCcccC
Confidence 35677776544 344555555544 432232 22244444344444 68888766543 246667776654
Q ss_pred CCceEEcCCcc----cccceecCcceEEecccccccccCCccCHHHHHHHHHHHHHh
Q 007247 500 GTVPIVASTGG----LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (611)
Q Consensus 500 G~PvI~s~~gg----~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~~la~~i~~ll~~ 552 (611)
.+|+|.-.... ..+.+..|..+++. .|-+.+++.++|..+++.
T Consensus 81 ~~~ii~ls~~~~~~~~~~~~~~g~~~~l~----------KP~~~~~l~~~i~~~~~~ 127 (140)
T 3lua_A 81 NTPVIIATKSDNPGYRHAALKFKVSDYIL----------KPYPTKRLENSVRSVLKI 127 (140)
T ss_dssp TCCEEEEESCCCHHHHHHHHHSCCSEEEE----------SSCCTTHHHHHHHHHHCC
T ss_pred CCCEEEEeCCCCHHHHHHHHHcCCCEEEE----------CCCCHHHHHHHHHHHHHh
Confidence 67777644322 23344567788887 899999999999999876
No 183
>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}
Probab=31.55 E-value=93 Score=30.34 Aligned_cols=91 Identities=16% Similarity=0.109 Sum_probs=56.0
Q ss_pred cEEEEEcCcccccCHHHHHHHHHhcccCCcEEEEEeCCCchhHHHHHHHHHHCCCceEEecccChHHHHHHHHHccEEEe
Q 007247 403 PVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILI 482 (611)
Q Consensus 403 ~~il~iGrl~~~Kg~d~li~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~i~~~aDv~l~ 482 (611)
..|+++|-=. -|...+++++.+. ++++++-+-+.. .+..+++..+++... +.. ..++++..|++++
T Consensus 7 ~~igiIG~G~--~g~~~~~~~l~~~--~~~~l~av~d~~---~~~~~~~a~~~~~~~-----~~~--~~~ll~~~D~V~i 72 (308)
T 3uuw_A 7 IKMGMIGLGS--IAQKAYLPILTKS--ERFEFVGAFTPN---KVKREKICSDYRIMP-----FDS--IESLAKKCDCIFL 72 (308)
T ss_dssp CEEEEECCSH--HHHHHTHHHHTSC--SSSEEEEEECSC---HHHHHHHHHHHTCCB-----CSC--HHHHHTTCSEEEE
T ss_pred CcEEEEecCH--HHHHHHHHHHHhC--CCeEEEEEECCC---HHHHHHHHHHcCCCC-----cCC--HHHHHhcCCEEEE
Confidence 4677777521 1222344555443 678888655554 344555666655211 222 3346669999998
Q ss_pred CCCCCCCcHHHHHHHHcCCceEEcC
Q 007247 483 PSRFEPCGLIQLHAMRYGTVPIVAS 507 (611)
Q Consensus 483 pS~~E~~gl~~lEAma~G~PvI~s~ 507 (611)
.+......-.+.+|+..|++|++-.
T Consensus 73 ~tp~~~h~~~~~~al~~gk~vl~EK 97 (308)
T 3uuw_A 73 HSSTETHYEIIKILLNLGVHVYVDK 97 (308)
T ss_dssp CCCGGGHHHHHHHHHHTTCEEEECS
T ss_pred eCCcHhHHHHHHHHHHCCCcEEEcC
Confidence 8876555556788999999999864
No 184
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=31.41 E-value=1.9e+02 Score=22.74 Aligned_cols=107 Identities=16% Similarity=0.134 Sum_probs=61.9
Q ss_pred EEEEEeCCCchhHHHHHHHHHHCCCceEEecccChHHHHHHHH--HccEEEeCCCC-CCCcHHHHHHHHc-----CCceE
Q 007247 433 QIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMRY-----GTVPI 504 (611)
Q Consensus 433 ~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~i~~--~aDv~l~pS~~-E~~gl~~lEAma~-----G~PvI 504 (611)
+++|+.+.+ ...+.++.+....+-.+. ...+.......+. ..|++++-... +.-|+.+++.+.. .+|+|
T Consensus 3 ~ilivdd~~-~~~~~l~~~L~~~~~~v~--~~~~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii 79 (124)
T 1mb3_A 3 KVLIVEDNE-LNMKLFHDLLEAQGYETL--QTREGLSALSIARENKPDLILMDIQLPEISGLEVTKWLKEDDDLAHIPVV 79 (124)
T ss_dssp EEEEECSCH-HHHHHHHHHHHHTTCEEE--EESCHHHHHHHHHHHCCSEEEEESBCSSSBHHHHHHHHHHSTTTTTSCEE
T ss_pred EEEEEcCCH-HHHHHHHHHHHHcCcEEE--EeCCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHcCccccCCcEE
Confidence 456666543 344555555444443232 2233333333333 36888875543 3457777777753 56776
Q ss_pred EcCCcc----cccceecCcceEEecccccccccCCccCHHHHHHHHHHHHHh
Q 007247 505 VASTGG----LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (611)
Q Consensus 505 ~s~~gg----~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~~la~~i~~ll~~ 552 (611)
.-.... ..+.++.|..+++. .|-+.+++...|.+++..
T Consensus 80 ~~s~~~~~~~~~~~~~~g~~~~l~----------KP~~~~~l~~~i~~~~~~ 121 (124)
T 1mb3_A 80 AVTAFAMKGDEERIREGGCEAYIS----------KPISVVHFLETIKRLLER 121 (124)
T ss_dssp EEC------CHHHHHHHTCSEEEC----------SSCCHHHHHHHHHHHHSC
T ss_pred EEECCCCHHHHHHHHhCCCCEEEe----------CCCCHHHHHHHHHHHHhc
Confidence 643222 23334567788876 899999999999988753
No 185
>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A*
Probab=31.39 E-value=45 Score=32.36 Aligned_cols=41 Identities=20% Similarity=0.067 Sum_probs=28.6
Q ss_pred CceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEeec
Q 007247 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (611)
Q Consensus 84 ~MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~~ 127 (611)
.||||+|... |. ..|=...+...++..|.+.||+|.++-..
T Consensus 2 MmkiLiI~gS--pr-~~s~t~~la~~~~~~l~~~g~eV~~~dL~ 42 (273)
T 1d4a_A 2 GRRALIVLAH--SE-RTSFNYAMKEAAAAALKKKGWEVVESDLY 42 (273)
T ss_dssp CCEEEEEECC--SC-TTSHHHHHHHHHHHHHHHTTCEEEEEETT
T ss_pred CCEEEEEEeC--CC-CccHHHHHHHHHHHHHHhCCCeEEEEEcc
Confidence 3799999975 53 22224455555677788899999998654
No 186
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=31.09 E-value=54 Score=31.90 Aligned_cols=52 Identities=15% Similarity=0.209 Sum_probs=34.8
Q ss_pred CcEEEEEcCcccccCHHHHHHHHHhcccCCcEEEEEeCCCc-hhHHHHHHHHHH
Q 007247 402 IPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKK-PMEKQLEQLEIL 454 (611)
Q Consensus 402 ~~~il~iGrl~~~Kg~d~li~a~~~l~~~~~~lvivG~g~~-~~~~~l~~l~~~ 454 (611)
..+|+|++.-.. -.-..++++++++++.++.+.++|=|.. .-.+.|+.+...
T Consensus 108 ~rIIlf~ds~~~-~~~~~l~~lak~lkk~gI~v~vIgFG~~~~n~~kLe~l~~~ 160 (268)
T 4b4t_W 108 QRIVAFVCSPIS-DSRDELIRLAKTLKKNNVAVDIINFGEIEQNTELLDEFIAA 160 (268)
T ss_dssp EEEEEEECSCCS-SCHHHHHHHHHHHHHHTEEEEEEEESSCCSSCCHHHHHHHH
T ss_pred eEEEEEECCCCC-CCHHHHHHHHHHHHHcCCEEEEEEeCCCccchHHHHHHHHH
Confidence 346777766433 2557788888888888898888887642 234556666554
No 187
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*
Probab=31.04 E-value=37 Score=31.19 Aligned_cols=25 Identities=12% Similarity=0.199 Sum_probs=18.9
Q ss_pred cccHHHHhccchHHHH-hCCCeEEEEeec
Q 007247 100 TGGLGDVLGGLPPALA-ANGHRVMTIAPR 127 (611)
Q Consensus 100 ~GG~~~~~~~La~~L~-~~Gh~V~vit~~ 127 (611)
.||+| ..+++.|. +.||+|.++..+
T Consensus 14 sg~iG---~~~~~~l~~~~g~~V~~~~r~ 39 (221)
T 3r6d_A 14 AGQIA---QXLTATLLTYTDMHITLYGRQ 39 (221)
T ss_dssp TSHHH---HHHHHHHHHHCCCEEEEEESS
T ss_pred CcHHH---HHHHHHHHhcCCceEEEEecC
Confidence 46666 45777888 899999998754
No 188
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=30.95 E-value=36 Score=33.11 Aligned_cols=38 Identities=29% Similarity=0.397 Sum_probs=27.7
Q ss_pred CceEEEEeeeecCccccc--cHHHHhccchHHHHhCCCeEEEEeec
Q 007247 84 GLNILFVGTEVAPWSKTG--GLGDVLGGLPPALAANGHRVMTIAPR 127 (611)
Q Consensus 84 ~MkIl~v~~~~~P~~~~G--G~~~~~~~La~~L~~~Gh~V~vit~~ 127 (611)
.|||+.|+.. .| |-.....+|+.+|+++|++|.+|=..
T Consensus 3 M~kvI~v~s~------KGGvGKTT~a~nLA~~La~~G~~VlliD~D 42 (286)
T 2xj4_A 3 ETRVIVVGNE------KGGAGKSTIAVHLVTALLYGGAKVAVIDLD 42 (286)
T ss_dssp -CEEEEECCS------SSCTTHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCeEEEEEcC------CCCCCHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 3566666643 34 45567888999999999999998654
No 189
>2ixd_A LMBE-related protein; hexamer, deacetylase, rossman fold, zinc-dependent metalloenzyme, hydrolase; 1.8A {Bacillus cereus}
Probab=30.84 E-value=41 Score=32.11 Aligned_cols=42 Identities=19% Similarity=0.087 Sum_probs=27.7
Q ss_pred CCCceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEeecCC
Q 007247 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYD 129 (611)
Q Consensus 82 ~~~MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~~~~ 129 (611)
|++++|++|++. |.+..= ..+.....++++|++|.+++...+
T Consensus 1 ~~~~~vL~v~aH--PDDe~l----~~Ggtia~~~~~G~~V~vv~lT~G 42 (242)
T 2ixd_A 1 MSGLHILAFGAH--ADDVEI----GMAGTIAKYTKQGYEVGICDLTEA 42 (242)
T ss_dssp -CCCSEEEEESS--TTHHHH----HHHHHHHHHHHTTCCEEEEEEECC
T ss_pred CCCccEEEEEeC--CChHHH----hHHHHHHHHHHCCCeEEEEEEcCC
Confidence 457899999985 764331 223344556779999999986533
No 190
>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}
Probab=30.79 E-value=26 Score=32.68 Aligned_cols=34 Identities=18% Similarity=0.379 Sum_probs=23.2
Q ss_pred ceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEeec
Q 007247 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (611)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~~ 127 (611)
||+++|+.- .||+| ..+++.|+++|++|.++..+
T Consensus 1 Mk~vlVTGa------s~gIG---~~~a~~l~~~G~~V~~~~r~ 34 (230)
T 3guy_A 1 MSLIVITGA------SSGLG---AELAKLYDAEGKATYLTGRS 34 (230)
T ss_dssp --CEEEEST------TSHHH---HHHHHHHHHTTCCEEEEESC
T ss_pred CCEEEEecC------CchHH---HHHHHHHHHCCCEEEEEeCC
Confidence 676666632 35666 45788999999999888654
No 191
>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}
Probab=30.69 E-value=30 Score=34.40 Aligned_cols=33 Identities=39% Similarity=0.605 Sum_probs=24.8
Q ss_pred CceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEeec
Q 007247 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (611)
Q Consensus 84 ~MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~~ 127 (611)
.|||++|+. |..|. .++..|++.||+|+++...
T Consensus 2 ~mkI~IiGa--------GaiG~---~~a~~L~~~g~~V~~~~r~ 34 (320)
T 3i83_A 2 SLNILVIGT--------GAIGS---FYGALLAKTGHCVSVVSRS 34 (320)
T ss_dssp -CEEEEESC--------CHHHH---HHHHHHHHTTCEEEEECST
T ss_pred CCEEEEECc--------CHHHH---HHHHHHHhCCCeEEEEeCC
Confidence 489999974 55553 3667789999999999764
No 192
>1ybx_A Conserved hypothetical protein; ST genomics, PSI, protein structure initiative, southeast COLL for structural genomics, secsg; HET: MSE; 1.80A {Clostridium thermocellum}
Probab=30.54 E-value=1.2e+02 Score=26.46 Aligned_cols=51 Identities=24% Similarity=0.346 Sum_probs=38.4
Q ss_pred CCceEEcCCcccccceecCcceEEecccccccccCCccCHHHHHHHHHHHHHh
Q 007247 500 GTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (611)
Q Consensus 500 G~PvI~s~~gg~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~~la~~i~~ll~~ 552 (611)
.+-+-.+..||++.+.-+|..-++ +...|.++++|.|++.|.+.|..++++
T Consensus 66 ~~eveg~sGgGlVkVtvnG~~ev~--~I~Idp~lldpeD~E~LeDLI~aAvNd 116 (143)
T 1ybx_A 66 EKTVEASAGGGAVTVVATGRKDIK--EITIKPEVVDPDDVEMLQDLILAAVNE 116 (143)
T ss_dssp HCEEEEEETTTTEEEEEETTCCEE--EEEECGGGCCTTCHHHHHHHHHHHHHH
T ss_pred cCEEEEEECCCEEEEEEecCceEE--EEEECHHHcCCcCHHHHHHHHHHHHHH
Confidence 455677777888888777643332 456677788999999999999999886
No 193
>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*
Probab=30.41 E-value=26 Score=34.86 Aligned_cols=38 Identities=29% Similarity=0.358 Sum_probs=23.4
Q ss_pred ccCCCceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEeec
Q 007247 80 VCGVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (611)
Q Consensus 80 ~~~~~MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~~ 127 (611)
...++|+|++.+. +|++| ..|++.|.++||+|.++...
T Consensus 15 ~~~~~~~vlVtGa-------tG~iG---~~l~~~L~~~G~~V~~~~r~ 52 (347)
T 4id9_A 15 VPRGSHMILVTGS-------AGRVG---RAVVAALRTQGRTVRGFDLR 52 (347)
T ss_dssp ------CEEEETT-------TSHHH---HHHHHHHHHTTCCEEEEESS
T ss_pred cccCCCEEEEECC-------CChHH---HHHHHHHHhCCCEEEEEeCC
Confidence 3345677776553 35555 45778899999999998654
No 194
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*
Probab=30.39 E-value=21 Score=32.95 Aligned_cols=40 Identities=10% Similarity=0.083 Sum_probs=22.3
Q ss_pred cCCCceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEE-EE
Q 007247 81 CGVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVM-TI 124 (611)
Q Consensus 81 ~~~~MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~-vi 124 (611)
.|.+|||++|... |. .+|....+.+......+.|++|. ++
T Consensus 3 ~M~~mkIl~I~GS--~r--~~s~t~~la~~~~~~~~~g~~v~~~i 43 (199)
T 4hs4_A 3 TTSPLHFVTLLGS--LR--KASFNAAVARALPEIAPEGIAITPLG 43 (199)
T ss_dssp --CCEEEEEEECC--CS--TTCHHHHHHHHHHHHCCTTEEEEECC
T ss_pred CCCCCEEEEEEcC--CC--CCChHHHHHHHHHHHccCCCEEEEEE
Confidence 4667999999975 43 34544333333333334678877 44
No 195
>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}
Probab=30.13 E-value=34 Score=33.77 Aligned_cols=32 Identities=28% Similarity=0.304 Sum_probs=24.5
Q ss_pred CceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEeec
Q 007247 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (611)
Q Consensus 84 ~MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~~ 127 (611)
+|||++|+. |.+|. .++..|+ .||+|+++...
T Consensus 2 ~mkI~IiGa--------Ga~G~---~~a~~L~-~g~~V~~~~r~ 33 (307)
T 3ego_A 2 SLKIGIIGG--------GSVGL---LCAYYLS-LYHDVTVVTRR 33 (307)
T ss_dssp CCEEEEECC--------SHHHH---HHHHHHH-TTSEEEEECSC
T ss_pred CCEEEEECC--------CHHHH---HHHHHHh-cCCceEEEECC
Confidence 589999984 66664 3566688 89999999754
No 196
>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Probab=30.08 E-value=15 Score=38.83 Aligned_cols=112 Identities=17% Similarity=0.193 Sum_probs=65.6
Q ss_pred EEEEEcCcccccCHHHHHHHHHhcccCCcEEEEEeCCC------------------chhHHHHHHHHHHCCCceEEeccc
Q 007247 404 VIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGK------------------KPMEKQLEQLEILYPEKARGVAKF 465 (611)
Q Consensus 404 ~il~iGrl~~~Kg~d~li~a~~~l~~~~~~lvivG~g~------------------~~~~~~l~~l~~~~~~~v~~~~~~ 465 (611)
.+.++|. .+.++.+.+.+....++--+++|+|.|. +.-.+..+.++.++++-+...+.-
T Consensus 211 ~v~~i~~---~~~i~~~~~~~g~~~~~~~~v~I~GgG~ig~~lA~~L~~~~~v~iIE~d~~r~~~la~~l~~~~Vi~GD~ 287 (461)
T 4g65_A 211 EVFFVAA---SNHIRSVMSELQRLEKPYRRIMIVGGGNIGASLAKRLEQTYSVKLIERNLQRAEKLSEELENTIVFCGDA 287 (461)
T ss_dssp EEEEEEE---TTTHHHHHHHTTGGGSCCCEEEEECCSHHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHCTTSEEEESCT
T ss_pred EEEEEec---cchHHHHHHhhccccccccEEEEEcchHHHHHHHHHhhhcCceEEEecCHHHHHHHHHHCCCceEEeccc
Confidence 3444443 4455666665554433344677777764 113466777777777544444443
Q ss_pred -ChHHHH-HHHHHccEEEeCCCC-CCCcHHHHHHHHcCCceEEcC--CcccccceecC
Q 007247 466 -NIPLAH-MIIAGADFILIPSRF-EPCGLIQLHAMRYGTVPIVAS--TGGLVDTVEEG 518 (611)
Q Consensus 466 -~~~~~~-~i~~~aDv~l~pS~~-E~~gl~~lEAma~G~PvI~s~--~gg~~e~v~~g 518 (611)
+.+.+. +=+..+|+++..... |.-=++.+-|-.+|++-+.+. .....++++..
T Consensus 288 td~~~L~ee~i~~~D~~ia~T~~De~Ni~~~llAk~~gv~kvIa~vn~~~~~~l~~~~ 345 (461)
T 4g65_A 288 ADQELLTEENIDQVDVFIALTNEDETNIMSAMLAKRMGAKKVMVLIQRGAYVDLVQGG 345 (461)
T ss_dssp TCHHHHHHTTGGGCSEEEECCSCHHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHCSS
T ss_pred cchhhHhhcCchhhcEEEEcccCcHHHHHHHHHHHHcCCccccccccccchhhhhhcc
Confidence 333332 346788999887765 444456777888999866654 34455555543
No 197
>2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae}
Probab=30.05 E-value=35 Score=32.47 Aligned_cols=26 Identities=31% Similarity=0.422 Sum_probs=20.8
Q ss_pred ccccHHHHhccchHHHHhCCCeEEEEeec
Q 007247 99 KTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (611)
Q Consensus 99 ~~GG~~~~~~~La~~L~~~Gh~V~vit~~ 127 (611)
+.|+.| ..+|++++++|++|++++..
T Consensus 27 SSG~mG---~aiA~~~~~~Ga~V~lv~~~ 52 (232)
T 2gk4_A 27 STGHLG---KIITETLLSAGYEVCLITTK 52 (232)
T ss_dssp CCCHHH---HHHHHHHHHTTCEEEEEECT
T ss_pred CCCHHH---HHHHHHHHHCCCEEEEEeCC
Confidence 356666 44799999999999999865
No 198
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}
Probab=29.75 E-value=33 Score=33.87 Aligned_cols=34 Identities=29% Similarity=0.409 Sum_probs=24.6
Q ss_pred CceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEeec
Q 007247 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (611)
Q Consensus 84 ~MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~~ 127 (611)
.|||++.+. +|++| ..|++.|.++||+|.+++..
T Consensus 13 ~M~ilVtGa-------tG~iG---~~l~~~L~~~g~~V~~~~r~ 46 (342)
T 2x4g_A 13 HVKYAVLGA-------TGLLG---HHAARAIRAAGHDLVLIHRP 46 (342)
T ss_dssp CCEEEEEST-------TSHHH---HHHHHHHHHTTCEEEEEECT
T ss_pred CCEEEEECC-------CcHHH---HHHHHHHHHCCCEEEEEecC
Confidence 478776553 35555 45778899999999998755
No 199
>3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG, structural protein structure initiative, midwest center for structural genomics; 2.10A {Bacillus halodurans}
Probab=29.19 E-value=38 Score=31.44 Aligned_cols=37 Identities=19% Similarity=0.122 Sum_probs=28.3
Q ss_pred CCceEEEEeeeecCccccccHHHH--hccchHHHHhCCCeEEEEeec
Q 007247 83 VGLNILFVGTEVAPWSKTGGLGDV--LGGLPPALAANGHRVMTIAPR 127 (611)
Q Consensus 83 ~~MkIl~v~~~~~P~~~~GG~~~~--~~~La~~L~~~Gh~V~vit~~ 127 (611)
+++||++-- +|+.+.+ ...|.+.|.+.|++|.++...
T Consensus 6 ~~k~I~lgi--------TGs~aa~~k~~~ll~~L~~~g~eV~vv~T~ 44 (201)
T 3lqk_A 6 AGKHVGFGL--------TGSHCTYHEVLPQMERLVELGAKVTPFVTH 44 (201)
T ss_dssp TTCEEEEEC--------CSCGGGGGGTHHHHHHHHHTTCEEEEECSS
T ss_pred CCCEEEEEE--------EChHHHHHHHHHHHHHHhhCCCEEEEEECh
Confidence 356777654 3555655 788999999999999999765
No 200
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=29.03 E-value=2.5e+02 Score=23.29 Aligned_cols=110 Identities=17% Similarity=0.216 Sum_probs=64.4
Q ss_pred CCcEEEEEeCCCchhHHHHHHHHHHCCCceEEecccChHHHHHHHH--HccEEEeCCCC-CCCcHHHHHHHH---cCCce
Q 007247 430 ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMR---YGTVP 503 (611)
Q Consensus 430 ~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~i~~--~aDv~l~pS~~-E~~gl~~lEAma---~G~Pv 503 (611)
...+++|+.+.+ ...+.+.......+-.+. ..-+.......+. ..|++++-... +.-|+.+++.+. ..+|+
T Consensus 6 ~~~~iLivdd~~-~~~~~l~~~L~~~g~~v~--~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~i 82 (154)
T 2rjn_A 6 KNYTVMLVDDEQ-PILNSLKRLIKRLGCNII--TFTSPLDALEALKGTSVQLVISDMRMPEMGGEVFLEQVAKSYPDIER 82 (154)
T ss_dssp SCCEEEEECSCH-HHHHHHHHHHHTTTCEEE--EESCHHHHHHHHTTSCCSEEEEESSCSSSCHHHHHHHHHHHCTTSEE
T ss_pred CCCeEEEEcCCH-HHHHHHHHHHHHcCCeEE--EeCCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHHhCCCCcE
Confidence 356777777654 344555555444442232 2223444434443 35888875543 345676676664 36776
Q ss_pred EEcCC-cc---cccceecC-cceEEecccccccccCCccCHHHHHHHHHHHHHh
Q 007247 504 IVAST-GG---LVDTVEEG-FTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (611)
Q Consensus 504 I~s~~-gg---~~e~v~~g-~~G~l~~~~~~~~~~v~~~d~~~la~~i~~ll~~ 552 (611)
|+-.. .. ..+.+..| ..+++. .|.+.+++...|..++..
T Consensus 83 i~ls~~~~~~~~~~~~~~g~~~~~l~----------kP~~~~~L~~~i~~~~~~ 126 (154)
T 2rjn_A 83 VVISGYADAQATIDAVNRGKISRFLL----------KPWEDEDVFKVVEKGLQL 126 (154)
T ss_dssp EEEECGGGHHHHHHHHHTTCCSEEEE----------SSCCHHHHHHHHHHHHHH
T ss_pred EEEecCCCHHHHHHHHhccchheeee----------CCCCHHHHHHHHHHHHHH
Confidence 65432 22 22233345 678886 899999999999998875
No 201
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=29.02 E-value=3.2e+02 Score=24.55 Aligned_cols=109 Identities=17% Similarity=0.156 Sum_probs=65.9
Q ss_pred CcEEEEEeCCCchhHHHHHHHHHHCCCceEEecccChHHHHHHHH--HccEEEeCCCC-CCCcHHHHHHHH---cCCceE
Q 007247 431 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMR---YGTVPI 504 (611)
Q Consensus 431 ~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~i~~--~aDv~l~pS~~-E~~gl~~lEAma---~G~PvI 504 (611)
..+++|+.+.+ ...+.+..+....+-.+. ..-+.......+. ..|++++-... +.-|+.+++.+. ..+|+|
T Consensus 7 ~~~ilivdd~~-~~~~~l~~~L~~~g~~v~--~~~~~~~a~~~~~~~~~dlvllD~~l~~~~g~~~~~~l~~~~~~~~ii 83 (233)
T 1ys7_A 7 SPRVLVVDDDS-DVLASLERGLRLSGFEVA--TAVDGAEALRSATENRPDAIVLDINMPVLDGVSVVTALRAMDNDVPVC 83 (233)
T ss_dssp CCEEEEECSCH-HHHHHHHHHHHHTTCEEE--EESSHHHHHHHHHHSCCSEEEEESSCSSSCHHHHHHHHHHTTCCCCEE
T ss_pred CCeEEEEeCCH-HHHHHHHHHHHhCCCEEE--EECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEE
Confidence 45677777654 344455554444432232 2224443333443 35888775543 446777777775 367776
Q ss_pred EcCC-c---ccccceecCcceEEecccccccccCCccCHHHHHHHHHHHHHh
Q 007247 505 VAST-G---GLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (611)
Q Consensus 505 ~s~~-g---g~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~~la~~i~~ll~~ 552 (611)
.-.. . ...+.+..|..+++. .|.+.+++...|..++..
T Consensus 84 ~lt~~~~~~~~~~~~~~ga~~~l~----------Kp~~~~~L~~~i~~~~~~ 125 (233)
T 1ys7_A 84 VLSARSSVDDRVAGLEAGADDYLV----------KPFVLAELVARVKALLRR 125 (233)
T ss_dssp EEECCCTTTCCCTTTTTTCSEEEE----------SSCCHHHHHHHHHHHHHH
T ss_pred EEEcCCCHHHHHHHHHcCCCEEEe----------CCCCHHHHHHHHHHHHhh
Confidence 6432 2 234455567889987 899999999999998864
No 202
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}
Probab=29.00 E-value=28 Score=32.52 Aligned_cols=25 Identities=16% Similarity=0.142 Sum_probs=19.4
Q ss_pred cccHHHHhccchHHHHhCC-CeEEEEeec
Q 007247 100 TGGLGDVLGGLPPALAANG-HRVMTIAPR 127 (611)
Q Consensus 100 ~GG~~~~~~~La~~L~~~G-h~V~vit~~ 127 (611)
.||+| ..+++.|.++| ++|.++...
T Consensus 32 tG~iG---~~l~~~L~~~G~~~V~~~~R~ 57 (236)
T 3qvo_A 32 GGQIA---RHVINQLADKQTIKQTLFARQ 57 (236)
T ss_dssp TSHHH---HHHHHHHTTCTTEEEEEEESS
T ss_pred CcHHH---HHHHHHHHhCCCceEEEEEcC
Confidence 46666 45788899999 899988755
No 203
>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}
Probab=28.93 E-value=29 Score=33.89 Aligned_cols=33 Identities=27% Similarity=0.451 Sum_probs=24.1
Q ss_pred CceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEeec
Q 007247 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (611)
Q Consensus 84 ~MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~~ 127 (611)
.|||++|+. |..| ..++..|++.||+|+++..+
T Consensus 3 ~m~i~iiG~--------G~~G---~~~a~~l~~~g~~V~~~~r~ 35 (316)
T 2ew2_A 3 AMKIAIAGA--------GAMG---SRLGIMLHQGGNDVTLIDQW 35 (316)
T ss_dssp -CEEEEECC--------SHHH---HHHHHHHHHTTCEEEEECSC
T ss_pred CCeEEEECc--------CHHH---HHHHHHHHhCCCcEEEEECC
Confidence 489999874 3344 34678899999999998653
No 204
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=28.89 E-value=2.4e+02 Score=23.09 Aligned_cols=66 Identities=14% Similarity=0.201 Sum_probs=42.1
Q ss_pred ccEEEeCCCC-CCCcHHHHHHHH---cCCceEEcCC-c---ccccceecCcceEEecccccccccCCccCHHHHHHHHHH
Q 007247 477 ADFILIPSRF-EPCGLIQLHAMR---YGTVPIVAST-G---GLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRR 548 (611)
Q Consensus 477 aDv~l~pS~~-E~~gl~~lEAma---~G~PvI~s~~-g---g~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~~la~~i~~ 548 (611)
.|++++-... +.-|+-+++.+. ..+|+|.-.. . ...+.+..|..+++. .|-+.+++.++|.+
T Consensus 50 ~dlvllD~~lp~~~g~~l~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~----------KP~~~~~L~~~i~~ 119 (141)
T 3cu5_A 50 PNVLLTDVRMPRMDGIELVDNILKLYPDCSVIFMSGYSDKEYLKAAIKFRAIRYVE----------KPIDPSEIMDALKQ 119 (141)
T ss_dssp CSEEEEESCCSSSCHHHHHHHHHHHCTTCEEEEECCSTTTCCC------CCCEEEC----------SSCCHHHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEeCCCcHHHHHHHHhCCccEEEe----------CCCCHHHHHHHHHH
Confidence 5888875443 345777777664 4677665432 2 233445567788876 89999999999998
Q ss_pred HHHh
Q 007247 549 ALAT 552 (611)
Q Consensus 549 ll~~ 552 (611)
++..
T Consensus 120 ~~~~ 123 (141)
T 3cu5_A 120 SIQT 123 (141)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8864
No 205
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=28.87 E-value=38 Score=33.76 Aligned_cols=32 Identities=28% Similarity=0.405 Sum_probs=25.6
Q ss_pred CceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEe
Q 007247 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIA 125 (611)
Q Consensus 84 ~MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit 125 (611)
.|||.||. .||.| +..+|+.|.++||+|++.=
T Consensus 4 ~~~i~~iG--------iGg~G--ms~~A~~L~~~G~~V~~~D 35 (326)
T 3eag_A 4 MKHIHIIG--------IGGTF--MGGLAAIAKEAGFEVSGCD 35 (326)
T ss_dssp CCEEEEES--------CCSHH--HHHHHHHHHHTTCEEEEEE
T ss_pred CcEEEEEE--------ECHHH--HHHHHHHHHhCCCEEEEEc
Confidence 46898888 47777 4467888999999999874
No 206
>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*
Probab=28.50 E-value=23 Score=34.65 Aligned_cols=35 Identities=14% Similarity=0.306 Sum_probs=23.3
Q ss_pred CCCceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEee
Q 007247 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAP 126 (611)
Q Consensus 82 ~~~MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~ 126 (611)
|++|||++++. +|++| ..|++.|.++||+|.++..
T Consensus 1 M~~~~ilVtGa-------tG~iG---~~l~~~L~~~g~~v~~~~r 35 (321)
T 1e6u_A 1 MAKQRVFIAGH-------RGMVG---SAIRRQLEQRGDVELVLRT 35 (321)
T ss_dssp -CCEEEEEETT-------TSHHH---HHHHHHHTTCTTEEEECCC
T ss_pred CCCCEEEEECC-------CcHHH---HHHHHHHHhCCCeEEEEec
Confidence 34578765543 35555 4578889999999888653
No 207
>2vvp_A Ribose-5-phosphate isomerase B; RPIB, RV2465C, RARE sugar, carbohydrate metabolism, pentose phosphate pathway; HET: R52 5RP; 1.65A {Mycobacterium tuberculosis} SCOP: c.121.1.1 PDB: 2vvo_A* 2vvq_A* 2bes_A* 2bet_A* 1usl_A
Probab=28.43 E-value=37 Score=30.33 Aligned_cols=37 Identities=14% Similarity=0.255 Sum_probs=25.0
Q ss_pred CCCceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEee
Q 007247 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAP 126 (611)
Q Consensus 82 ~~~MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~ 126 (611)
|++|||++-+.+ +|.. +=..|...|.+.||+|.=+.+
T Consensus 1 m~~MkIaigsDh-------aG~~-lK~~i~~~L~~~G~eV~D~G~ 37 (162)
T 2vvp_A 1 MSGMRVYLGADH-------AGYE-LKQRIIEHLKQTGHEPIDCGA 37 (162)
T ss_dssp --CCEEEEEECH-------HHHH-HHHHHHHHHHHTTCEEEECSC
T ss_pred CCCCEEEEEeCc-------hhHH-HHHHHHHHHHHCCCEEEEeCC
Confidence 345898777653 4444 334477789999999988764
No 208
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Probab=28.42 E-value=31 Score=34.25 Aligned_cols=36 Identities=19% Similarity=0.146 Sum_probs=25.5
Q ss_pred CCCceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEeec
Q 007247 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (611)
Q Consensus 82 ~~~MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~~ 127 (611)
+++|+|++++. +|++| ..|++.|.++||+|.++...
T Consensus 23 ~~~~~vlVtGa-------tG~iG---~~l~~~L~~~g~~V~~~~r~ 58 (351)
T 3ruf_A 23 FSPKTWLITGV-------AGFIG---SNLLEKLLKLNQVVIGLDNF 58 (351)
T ss_dssp HSCCEEEEETT-------TSHHH---HHHHHHHHHTTCEEEEEECC
T ss_pred CCCCeEEEECC-------CcHHH---HHHHHHHHHCCCEEEEEeCC
Confidence 34577776543 35555 45788899999999999764
No 209
>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}
Probab=28.15 E-value=35 Score=32.71 Aligned_cols=37 Identities=19% Similarity=0.193 Sum_probs=25.8
Q ss_pred CCCceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEeec
Q 007247 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (611)
Q Consensus 82 ~~~MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~~ 127 (611)
|..+|+++|+.- .||+| ..+++.|+++|++|.++..+
T Consensus 23 m~~~k~vlITGa------s~gIG---~a~a~~l~~~G~~V~~~~~~ 59 (272)
T 4e3z_A 23 MSDTPVVLVTGG------SRGIG---AAVCRLAARQGWRVGVNYAA 59 (272)
T ss_dssp -CCSCEEEETTT------TSHHH---HHHHHHHHHTTCEEEEEESS
T ss_pred ccCCCEEEEECC------CchHH---HHHHHHHHHCCCEEEEEcCC
Confidence 445677777732 45665 46888999999999887544
No 210
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=28.12 E-value=2.3e+02 Score=22.69 Aligned_cols=108 Identities=14% Similarity=0.078 Sum_probs=62.7
Q ss_pred cEEEEEeCCCchhHHHHHHHHHHCCCceEEecccChHHHHHHHH--HccEEEeCCCC-CCCcHHHHHHHH---cCCceEE
Q 007247 432 VQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMR---YGTVPIV 505 (611)
Q Consensus 432 ~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~i~~--~aDv~l~pS~~-E~~gl~~lEAma---~G~PvI~ 505 (611)
.+++|+.+.. ...+.+.......+-.+. ..-+....-..+. ..|++++-... +.-|+.+++.+. ..+|+|.
T Consensus 4 ~~ilivdd~~-~~~~~l~~~L~~~g~~v~--~~~~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~ 80 (136)
T 1mvo_A 4 KKILVVDDEE-SIVTLLQYNLERSGYDVI--TASDGEEALKKAETEKPDLIVLDVMLPKLDGIEVCKQLRQQKLMFPILM 80 (136)
T ss_dssp CEEEEECSCH-HHHHHHHHHHHHTTCEEE--EESSHHHHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEE
T ss_pred CEEEEEECCH-HHHHHHHHHHHHCCcEEE--EecCHHHHHHHHhhcCCCEEEEecCCCCCCHHHHHHHHHcCCCCCCEEE
Confidence 4567777543 344455554444432232 2223333333333 36888775544 345777777665 3567665
Q ss_pred c-CCcc---cccceecCcceEEecccccccccCCccCHHHHHHHHHHHHHh
Q 007247 506 A-STGG---LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (611)
Q Consensus 506 s-~~gg---~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~~la~~i~~ll~~ 552 (611)
- .... ..+.+..|..+++. .|.+.+++...|..++..
T Consensus 81 ~s~~~~~~~~~~~~~~g~~~~l~----------KP~~~~~l~~~i~~~~~~ 121 (136)
T 1mvo_A 81 LTAKDEEFDKVLGLELGADDYMT----------KPFSPREVNARVKAILRR 121 (136)
T ss_dssp EECTTCCCCHHHHHHTTCCEEEE----------SSCCHHHHHHHHHHHHHT
T ss_pred EECCCCHHHHHHHHhCCCCEEEE----------CCCCHHHHHHHHHHHHHh
Confidence 3 3322 22234567788887 899999999999998875
No 211
>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=28.04 E-value=24 Score=34.55 Aligned_cols=33 Identities=18% Similarity=0.348 Sum_probs=25.0
Q ss_pred CceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEeec
Q 007247 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (611)
Q Consensus 84 ~MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~~ 127 (611)
.|||++|+. |..|. .++..|++.||+|+++...
T Consensus 2 ~mkI~iiGa--------Ga~G~---~~a~~L~~~g~~V~~~~r~ 34 (294)
T 3g17_A 2 SLSVAIIGP--------GAVGT---TIAYELQQSLPHTTLIGRH 34 (294)
T ss_dssp -CCEEEECC--------SHHHH---HHHHHHHHHCTTCEEEESS
T ss_pred CcEEEEECC--------CHHHH---HHHHHHHHCCCeEEEEEec
Confidence 489999984 55554 3667788899999999765
No 212
>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.60A {Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A
Probab=28.03 E-value=1.5e+02 Score=26.72 Aligned_cols=136 Identities=12% Similarity=0.046 Sum_probs=70.3
Q ss_pred cEEEEEcC-c--ccccCHHHHHHHHHhcccCCcEEEEEeCCCchhHHHHHHHHHHCCCceEEecc-cChHHH--------
Q 007247 403 PVIGFIGR-L--EEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAK-FNIPLA-------- 470 (611)
Q Consensus 403 ~~il~iGr-l--~~~Kg~d~li~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~-~~~~~~-------- 470 (611)
+.|..+|. - ....+.+..-+..+.|.+.++.++- |.+..-......+-+.+.+..+..+.. .+.+..
T Consensus 14 ~~VaV~Gs~~~g~~~~~~~~A~~lg~~La~~g~~lVs-GGg~~Gim~aa~~gAl~~gG~tigVlP~~~~~~~~~~~~~~i 92 (176)
T 2iz6_A 14 PIIGVMGPGKADTAENQLVMANELGKQIATHGWILLT-GGRSLGVMHEAMKGAKEAGGTTIGVLPGPDTSEISDAVDIPI 92 (176)
T ss_dssp CEEEEECCCGGGCCHHHHHHHHHHHHHHHHTTCEEEE-ECSSSSHHHHHHHHHHHTTCCEEEEECC-----CCTTCSEEE
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEE-CCCccCHhHHHHHHHHHcCCEEEEEeCchhhhhhccCCceeE
Confidence 34444443 3 2344445555555555556777654 545222444444444444444444322 111111
Q ss_pred ---------HHHHHHccEEEeCCCCCCCcH--HHHHHHHcCCceEEcCCcccc-cceecC-cceEEecccccccccCCcc
Q 007247 471 ---------HMIIAGADFILIPSRFEPCGL--IQLHAMRYGTVPIVASTGGLV-DTVEEG-FTGFQMGSFSVDCEAVDPV 537 (611)
Q Consensus 471 ---------~~i~~~aDv~l~pS~~E~~gl--~~lEAma~G~PvI~s~~gg~~-e~v~~g-~~G~l~~~~~~~~~~v~~~ 537 (611)
..+...+|.+|.-. -++|. .+.||+..++||++-+.-+.. .++.+. ...+. -.+
T Consensus 93 ~~~~~~~Rk~~m~~~sda~Ivlp--Gg~GTL~E~~~al~~~kpV~~l~~~~~~~gfi~~~~~~~i~-----------~~~ 159 (176)
T 2iz6_A 93 VTGLGSARDNINALSSNVLVAVG--MGPGTAAEVALALKAKKPVVLLGTQPEAEKFFTSLDAGLVH-----------VAA 159 (176)
T ss_dssp ECCCCSSSCCCCGGGCSEEEEES--CCHHHHHHHHHHHHTTCCEEEESCCHHHHHHHHHHCTTTEE-----------EES
T ss_pred EcCCHHHHHHHHHHhCCEEEEec--CCccHHHHHHHHHHhCCcEEEEcCcccccccCChhhcCeEE-----------EcC
Confidence 02445677765432 13554 488899999999998752211 122221 12232 468
Q ss_pred CHHHHHHHHHHHHHh
Q 007247 538 DVAAVSTTVRRALAT 552 (611)
Q Consensus 538 d~~~la~~i~~ll~~ 552 (611)
|++++.+.|.+.++.
T Consensus 160 ~~~e~~~~l~~~~~~ 174 (176)
T 2iz6_A 160 DVAGAIAAVKQLLAK 174 (176)
T ss_dssp SHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHh
Confidence 899999999887754
No 213
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=27.83 E-value=51 Score=29.65 Aligned_cols=38 Identities=11% Similarity=0.136 Sum_probs=31.4
Q ss_pred ceEEEEeeeecCccccccHHHHhccchHHHHh-CCCeEEEEeec
Q 007247 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAA-NGHRVMTIAPR 127 (611)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~-~Gh~V~vit~~ 127 (611)
|||++|... | .|-...+...++..+.+ .|++|.++-..
T Consensus 2 mkilii~~S--~---~g~t~~la~~i~~~l~~~~g~~v~~~~l~ 40 (198)
T 3b6i_A 2 AKVLVLYYS--M---YGHIETMARAVAEGASKVDGAEVVVKRVP 40 (198)
T ss_dssp CEEEEEECC--S---SSHHHHHHHHHHHHHHTSTTCEEEEEECC
T ss_pred CeEEEEEeC--C---CcHHHHHHHHHHHHHhhcCCCEEEEEEcc
Confidence 799999754 4 57788888889999998 89999998654
No 214
>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A
Probab=27.73 E-value=2.6e+02 Score=27.57 Aligned_cols=87 Identities=13% Similarity=0.072 Sum_probs=55.8
Q ss_pred HHHHHHHhCCCCCCCCcEEEEEcCcccccCHHHHHHHHHhcccCCcEEEEEeCCC----chhHHHHHHHHHHCCCceEEe
Q 007247 387 KEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGK----KPMEKQLEQLEILYPEKARGV 462 (611)
Q Consensus 387 ~~~~~~~~gl~~~~~~~~il~iGrl~~~Kg~d~li~a~~~l~~~~~~lvivG~g~----~~~~~~l~~l~~~~~~~v~~~ 462 (611)
--.+++..|-- +...|.|+|-+ ...=..-++.++.++ ++++.++|+.. +++.+.+++.+.+.+.++...
T Consensus 136 l~Ti~e~~g~l---~gl~va~vGD~-~~rva~Sl~~~~~~~---g~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~~~~~ 208 (307)
T 2i6u_A 136 LQTIAERKGAL---RGLRLSYFGDG-ANNMAHSLLLGGVTA---GIHVTVAAPEGFLPDPSVRAAAERRAQDTGASVTVT 208 (307)
T ss_dssp HHHHHHHHSCC---TTCEEEEESCT-TSHHHHHHHHHHHHT---TCEEEEECCTTSCCCHHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHhCCc---CCeEEEEECCC-CcCcHHHHHHHHHHC---CCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEE
Confidence 33466666632 33689999997 333356777888877 78999999853 234445555655655444433
Q ss_pred cccChHHHHHHHHHccEEEeCCC
Q 007247 463 AKFNIPLAHMIIAGADFILIPSR 485 (611)
Q Consensus 463 ~~~~~~~~~~i~~~aDv~l~pS~ 485 (611)
..+.+.+.+||++.....
T Consensus 209 -----~d~~eav~~aDvvy~~~w 226 (307)
T 2i6u_A 209 -----ADAHAAAAGADVLVTDTW 226 (307)
T ss_dssp -----SCHHHHHTTCSEEEECCS
T ss_pred -----ECHHHHhcCCCEEEecce
Confidence 123457899999887554
No 215
>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}
Probab=27.65 E-value=39 Score=33.34 Aligned_cols=33 Identities=33% Similarity=0.458 Sum_probs=23.7
Q ss_pred CceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEeec
Q 007247 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (611)
Q Consensus 84 ~MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~~ 127 (611)
.|||++|+. |..|.. ++..|++.||+|+++...
T Consensus 2 ~mkI~IiGa--------GaiG~~---~a~~L~~~g~~V~~~~r~ 34 (312)
T 3hn2_A 2 SLRIAIVGA--------GALGLY---YGALLQRSGEDVHFLLRR 34 (312)
T ss_dssp --CEEEECC--------STTHHH---HHHHHHHTSCCEEEECST
T ss_pred CCEEEEECc--------CHHHHH---HHHHHHHCCCeEEEEEcC
Confidence 489999984 444433 567789999999999764
No 216
>3tqq_A Methionyl-tRNA formyltransferase; protein synthesis; 2.00A {Coxiella burnetii}
Probab=27.59 E-value=52 Score=32.80 Aligned_cols=34 Identities=32% Similarity=0.489 Sum_probs=23.8
Q ss_pred CCceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEeec
Q 007247 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (611)
Q Consensus 83 ~~MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~~ 127 (611)
++|||+|+++ |. +.....++|.+.||+|..|..+
T Consensus 1 ~~mrivf~Gt---p~--------fa~~~L~~L~~~~~~v~~Vvt~ 34 (314)
T 3tqq_A 1 MSLKIVFAGT---PQ--------FAVPTLRALIDSSHRVLAVYTQ 34 (314)
T ss_dssp CCCEEEEEEC---SG--------GGHHHHHHHHHSSSEEEEEECC
T ss_pred CCcEEEEECC---CH--------HHHHHHHHHHHCCCeEEEEEeC
Confidence 3699999986 32 1223457788889999877665
No 217
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=27.51 E-value=58 Score=29.22 Aligned_cols=40 Identities=0% Similarity=0.003 Sum_probs=28.9
Q ss_pred ceEEEEeeeecCccccccHHHHhccchHHHHhC------CCeEEEEeec
Q 007247 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAAN------GHRVMTIAPR 127 (611)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~------Gh~V~vit~~ 127 (611)
|||++|... |. +.|-...++..++..+.+. |++|.++-..
T Consensus 1 Mkilii~gS--~r-~~~~t~~la~~~~~~l~~~~~~~~~g~~v~~~dl~ 46 (191)
T 1t0i_A 1 MKVGIIMGS--VR-AKRVCPEIAAYVKRTIENSEELIDQKLKIQVVDLQ 46 (191)
T ss_dssp CEEEEEECC--CC-SSCSHHHHHHHHHHHHHTCTTTTTTTCEEEEECHH
T ss_pred CeEEEEeCC--CC-CCCchHHHHHHHHHHHHHhhccCCCCceEEEEehh
Confidence 899999875 53 2355666667777778776 7999998643
No 218
>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}
Probab=27.29 E-value=33 Score=33.63 Aligned_cols=34 Identities=24% Similarity=0.199 Sum_probs=24.3
Q ss_pred CceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEeec
Q 007247 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (611)
Q Consensus 84 ~MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~~ 127 (611)
+|+|++++. +|++|. .++++|.++||+|.+++..
T Consensus 4 ~~~ilVtGa-------tG~iG~---~l~~~L~~~g~~V~~~~R~ 37 (321)
T 3c1o_A 4 MEKIIIYGG-------TGYIGK---FMVRASLSFSHPTFIYARP 37 (321)
T ss_dssp CCCEEEETT-------TSTTHH---HHHHHHHHTTCCEEEEECC
T ss_pred ccEEEEEcC-------CchhHH---HHHHHHHhCCCcEEEEECC
Confidence 466766553 355554 4778899999999998765
No 219
>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0
Probab=27.26 E-value=41 Score=33.15 Aligned_cols=35 Identities=26% Similarity=0.269 Sum_probs=24.5
Q ss_pred CCceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEeec
Q 007247 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (611)
Q Consensus 83 ~~MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~~ 127 (611)
++|+|++.+. +||+| ..+++.|.++||+|.++...
T Consensus 4 ~~~~vlVTGa-------tG~iG---~~l~~~L~~~G~~V~~~~r~ 38 (341)
T 3enk_A 4 TKGTILVTGG-------AGYIG---SHTAVELLAHGYDVVIADNL 38 (341)
T ss_dssp SSCEEEEETT-------TSHHH---HHHHHHHHHTTCEEEEECCC
T ss_pred CCcEEEEecC-------CcHHH---HHHHHHHHHCCCcEEEEecC
Confidence 3566655442 36666 45788899999999998654
No 220
>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*
Probab=27.05 E-value=42 Score=31.47 Aligned_cols=34 Identities=24% Similarity=0.198 Sum_probs=23.7
Q ss_pred ceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEeec
Q 007247 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (611)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~~ 127 (611)
+|.++|+.- .||+| ..+++.|+++|++|.++..+
T Consensus 7 ~k~vlVTGa------s~gIG---~~ia~~l~~~G~~V~~~~r~ 40 (241)
T 1dhr_A 7 ARRVLVYGG------RGALG---SRCVQAFRARNWWVASIDVV 40 (241)
T ss_dssp CCEEEEETT------TSHHH---HHHHHHHHTTTCEEEEEESS
T ss_pred CCEEEEECC------CcHHH---HHHHHHHHhCCCEEEEEeCC
Confidence 455566531 46666 45788899999999988654
No 221
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=27.02 E-value=3.4e+02 Score=24.19 Aligned_cols=108 Identities=15% Similarity=0.133 Sum_probs=60.4
Q ss_pred CcEEEEEeCCCchhHHHHHHHHHHCCCceEEecccChHHHHHHHH---------------HccEEEeCCCC-CCCcHHHH
Q 007247 431 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA---------------GADFILIPSRF-EPCGLIQL 494 (611)
Q Consensus 431 ~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~i~~---------------~aDv~l~pS~~-E~~gl~~l 494 (611)
+.+++|+.+.+ ...+.+..+....+-. .....-+...+-.++. ..|++|+-... +.-|+-++
T Consensus 61 ~~~ILiVdDd~-~~~~~l~~~L~~~g~~-~v~~a~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~~lp~~~G~el~ 138 (206)
T 3mm4_A 61 GKRVLVVDDNF-ISRKVATGKLKKMGVS-EVEQCDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDCQMPEMDGYEAT 138 (206)
T ss_dssp TCEEEEECSCH-HHHHHHHHHHHHTTCS-EEEEESSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEESCCSSSCHHHHH
T ss_pred CCEEEEEeCCH-HHHHHHHHHHHHcCCC-eeeeeCCHHHHHHHHHhhcccccccccccCCCCCEEEEcCCCCCCCHHHHH
Confidence 45677776543 3445555555554421 1112223333333443 36888875544 44577777
Q ss_pred HHHH-------cCCceEEcCC-c-c---cccceecCcceEEecccccccccCCccCHHHHHHHHHHHHHh
Q 007247 495 HAMR-------YGTVPIVAST-G-G---LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (611)
Q Consensus 495 EAma-------~G~PvI~s~~-g-g---~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~~la~~i~~ll~~ 552 (611)
+.+. ..+|+|+-.. . . ..+.+..|..+|+. .|-+ +|.+.|.++++.
T Consensus 139 ~~lr~~~~~~~~~~piI~ls~~~~~~~~~~~~~~~Ga~~~l~----------KP~~--~L~~~i~~~l~~ 196 (206)
T 3mm4_A 139 REIRKVEKSYGVRTPIIAVSGHDPGSEEARETIQAGMDAFLD----------KSLN--QLANVIREIESK 196 (206)
T ss_dssp HHHHHHHHTTTCCCCEEEEESSCCCHHHHHHHHHHTCSEEEE----------TTCT--THHHHHHHHC--
T ss_pred HHHHhhhhhcCCCCcEEEEECCCCcHHHHHHHHhCCCCEEEc----------CcHH--HHHHHHHHHHhh
Confidence 7765 4577766443 2 1 22344567788886 6766 899999888875
No 222
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=27.02 E-value=2.5e+02 Score=22.62 Aligned_cols=109 Identities=14% Similarity=0.159 Sum_probs=63.2
Q ss_pred cEEEEEeCCCchhHHHHHHHHHHCCCceEEeccc-ChHHHHHHHH--HccEEEeCCCC-CCCcHHHHHHHHc---CCceE
Q 007247 432 VQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKF-NIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMRY---GTVPI 504 (611)
Q Consensus 432 ~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~-~~~~~~~i~~--~aDv~l~pS~~-E~~gl~~lEAma~---G~PvI 504 (611)
.+++|+.+.+ ...+.+..+....+. +...... +....-..+. ..|++++-... +.-|+-+++.+.. .+|+|
T Consensus 4 ~~Ilivdd~~-~~~~~l~~~l~~~~~-~~~v~~~~~~~~al~~~~~~~~dlvilD~~lp~~~g~~~~~~l~~~~~~~~ii 81 (133)
T 3b2n_A 4 TSLIIAEDQN-MLRQAMVQLIKLHGD-FEILADTDNGLDAMKLIEEYNPNVVILDIEMPGMTGLEVLAEIRKKHLNIKVI 81 (133)
T ss_dssp EEEEEECSCH-HHHHHHHHHHHHHSS-EEEEEEESCHHHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHHTTCSCEEE
T ss_pred eEEEEECCCH-HHHHHHHHHHhhCCC-cEEEEEcCCHHHHHHHHhhcCCCEEEEecCCCCCCHHHHHHHHHHHCCCCcEE
Confidence 3566666543 345555555444332 2222222 3333333333 46888876554 3457777777753 56766
Q ss_pred Ec-CCcc---cccceecCcceEEecccccccccCCccCHHHHHHHHHHHHHh
Q 007247 505 VA-STGG---LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (611)
Q Consensus 505 ~s-~~gg---~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~~la~~i~~ll~~ 552 (611)
.- .... ..+.+..|..+++. .|.+.+++.+.|.+++..
T Consensus 82 ~ls~~~~~~~~~~~~~~ga~~~l~----------Kp~~~~~L~~~i~~~~~~ 123 (133)
T 3b2n_A 82 IVTTFKRPGYFEKAVVNDVDAYVL----------KERSIEELVETINKVNNG 123 (133)
T ss_dssp EEESCCCHHHHHHHHHTTCSEEEE----------TTSCHHHHHHHHHHHHC-
T ss_pred EEecCCCHHHHHHHHHcCCcEEEE----------CCCCHHHHHHHHHHHHcC
Confidence 54 3322 33445567889987 899999999999988764
No 223
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=26.99 E-value=20 Score=32.57 Aligned_cols=41 Identities=7% Similarity=-0.059 Sum_probs=22.7
Q ss_pred CCCceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEee
Q 007247 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAP 126 (611)
Q Consensus 82 ~~~MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~ 126 (611)
+..|||++|... |. +.|-...++..++..+. .|++|.++-.
T Consensus 4 ~~~Mkilii~gS--~r-~~g~t~~la~~i~~~l~-~g~~v~~~dl 44 (193)
T 1rtt_A 4 SDDIKVLGISGS--LR-SGSYNSAALQEAIGLVP-PGMSIELADI 44 (193)
T ss_dssp ---CEEEEEESC--CS-TTCHHHHHHHHHHTTCC-TTCEEEECCC
T ss_pred CCCceEEEEECC--CC-CCChHHHHHHHHHHhcc-CCCeEEEEeH
Confidence 346899999864 53 22333333444444444 5888888754
No 224
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=26.87 E-value=56 Score=31.56 Aligned_cols=41 Identities=20% Similarity=0.362 Sum_probs=31.3
Q ss_pred CCceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEeec
Q 007247 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (611)
Q Consensus 83 ~~MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~~ 127 (611)
.+||++.|++. -| .-|-.....+||..|++.|.+|.+|-..
T Consensus 80 ~~~kvI~vts~-kg---G~GKTt~a~nLA~~lA~~G~rVLLID~D 120 (271)
T 3bfv_A 80 SAVQSIVITSE-AP---GAGKSTIAANLAVAYAQAGYKTLIVDGD 120 (271)
T ss_dssp CCCCEEEEECS-ST---TSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCCeEEEEECC-CC---CCcHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 46788888763 12 2356678889999999999999999654
No 225
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=26.82 E-value=2.4e+02 Score=22.44 Aligned_cols=109 Identities=17% Similarity=0.170 Sum_probs=63.2
Q ss_pred CcEEEEEeCCCchhHHHHHHHHHHCCCceEEecccChHHHHHHHH--HccEEEeCCCC-CCCcHHHHHHHHc-----CCc
Q 007247 431 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMRY-----GTV 502 (611)
Q Consensus 431 ~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~i~~--~aDv~l~pS~~-E~~gl~~lEAma~-----G~P 502 (611)
..+++|+.+.+ ...+.++.+....+-.+. ..-+.......+. ..|++++-... +.-|+.+++.+.. ..|
T Consensus 6 ~~~ilivdd~~-~~~~~l~~~L~~~g~~v~--~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~ 82 (132)
T 3lte_A 6 SKRILVVDDDQ-AMAAAIERVLKRDHWQVE--IAHNGFDAGIKLSTFEPAIMTLDLSMPKLDGLDVIRSLRQNKVANQPK 82 (132)
T ss_dssp -CEEEEECSCH-HHHHHHHHHHHHTTCEEE--EESSHHHHHHHHHHTCCSEEEEESCBTTBCHHHHHHHHHTTTCSSCCE
T ss_pred CccEEEEECCH-HHHHHHHHHHHHCCcEEE--EeCCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhcCccCCCe
Confidence 45677776543 344555555444432232 2223333333333 45777776554 4567888888763 244
Q ss_pred eEEcCCcc---cccceecCcceEEecccccccccCCccCHHHHHHHHHHHHHh
Q 007247 503 PIVASTGG---LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (611)
Q Consensus 503 vI~s~~gg---~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~~la~~i~~ll~~ 552 (611)
+|.+.... ..+.+..|..+++. .|.+.+++.+.|.+....
T Consensus 83 ii~~~~~~~~~~~~~~~~g~~~~l~----------kP~~~~~l~~~i~~~~~~ 125 (132)
T 3lte_A 83 ILVVSGLDKAKLQQAVTEGADDYLE----------KPFDNDALLDRIHDLVNE 125 (132)
T ss_dssp EEEECCSCSHHHHHHHHHTCCEEEC----------SSCCHHHHHHHHHHHHC-
T ss_pred EEEEeCCChHHHHHHHHhChHHHhh----------CCCCHHHHHHHHHHHcCC
Confidence 55443322 22344567888876 899999999999988764
No 226
>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A
Probab=26.71 E-value=33 Score=31.92 Aligned_cols=36 Identities=22% Similarity=0.362 Sum_probs=25.3
Q ss_pred CCCceEEEEeeeecCccccccHHHHhccchHHHHhCCC--eEEEEeec
Q 007247 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGH--RVMTIAPR 127 (611)
Q Consensus 82 ~~~MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh--~V~vit~~ 127 (611)
|++|+|++.+. .||+|. .+++.|.++|| +|.++...
T Consensus 16 m~~~~vlVtGa-------sg~iG~---~l~~~L~~~G~~~~V~~~~r~ 53 (242)
T 2bka_A 16 MQNKSVFILGA-------SGETGR---VLLKEILEQGLFSKVTLIGRR 53 (242)
T ss_dssp HTCCEEEEECT-------TSHHHH---HHHHHHHHHTCCSEEEEEESS
T ss_pred hcCCeEEEECC-------CcHHHH---HHHHHHHcCCCCCEEEEEEcC
Confidence 34567665553 466664 47888999999 99998754
No 227
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=26.63 E-value=2.4e+02 Score=22.33 Aligned_cols=108 Identities=14% Similarity=0.144 Sum_probs=63.7
Q ss_pred cEEEEEeCCCchhHHHHHHHHHHCCCceEEecccChHHHHHHHH--HccEEEeCCCC-CCCcHHHHHHHHc-----CCce
Q 007247 432 VQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMRY-----GTVP 503 (611)
Q Consensus 432 ~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~i~~--~aDv~l~pS~~-E~~gl~~lEAma~-----G~Pv 503 (611)
.+++|+.+.. ...+.++.+....+ ......-+...+...+. ..|++++-... +.-|+.+++.+.. .+|+
T Consensus 4 ~~ilivdd~~-~~~~~l~~~L~~~g--~~v~~~~~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~i 80 (127)
T 3i42_A 4 QQALIVEDYQ-AAAETFKELLEMLG--FQADYVMSGTDALHAMSTRGYDAVFIDLNLPDTSGLALVKQLRALPMEKTSKF 80 (127)
T ss_dssp EEEEEECSCH-HHHHHHHHHHHHTT--EEEEEESSHHHHHHHHHHSCCSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEE
T ss_pred ceEEEEcCCH-HHHHHHHHHHHHcC--CCEEEECCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCE
Confidence 4677777544 35555665555544 22222224444434443 35887775543 5567788877754 4676
Q ss_pred EEcCCccc---ccceecCcceEEecccccccccCCccCHHHHHHHHHHHHHh
Q 007247 504 IVASTGGL---VDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (611)
Q Consensus 504 I~s~~gg~---~e~v~~g~~G~l~~~~~~~~~~v~~~d~~~la~~i~~ll~~ 552 (611)
|+-....- .+.+..|..+++. .|-+.+++.+++......
T Consensus 81 i~~s~~~~~~~~~~~~~g~~~~l~----------KP~~~~~L~~~i~~~~~~ 122 (127)
T 3i42_A 81 VAVSGFAKNDLGKEACELFDFYLE----------KPIDIASLEPILQSIEGH 122 (127)
T ss_dssp EEEECC-CTTCCHHHHHHCSEEEE----------SSCCHHHHHHHHHHHC--
T ss_pred EEEECCcchhHHHHHHHhhHHhee----------CCCCHHHHHHHHHHhhcc
Confidence 65432221 3344557778876 999999999999987664
No 228
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=26.60 E-value=34 Score=31.49 Aligned_cols=29 Identities=38% Similarity=0.578 Sum_probs=23.0
Q ss_pred ceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEE
Q 007247 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTI 124 (611)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vi 124 (611)
..|++|.. .| .|+. +|..|+++|++|+|+
T Consensus 3 ~dV~IIGa--Gp----aGL~-----aA~~La~~G~~V~v~ 31 (336)
T 3kkj_A 3 VPIAIIGT--GI----AGLS-----AAQALTAAGHQVHLF 31 (336)
T ss_dssp CCEEEECC--SH----HHHH-----HHHHHHHTTCCEEEE
T ss_pred CCEEEECc--CH----HHHH-----HHHHHHHCCCCEEEE
Confidence 45888885 24 4566 888999999999999
No 229
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=26.59 E-value=55 Score=32.02 Aligned_cols=43 Identities=12% Similarity=-0.017 Sum_probs=30.6
Q ss_pred CCCceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEeec
Q 007247 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (611)
Q Consensus 82 ~~~MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~~ 127 (611)
+.+|||++|... |. +.|-...++..+++.+.+.|++|.++-..
T Consensus 56 ~~~mKILiI~GS--~R-~~S~T~~La~~~~~~l~~~G~eveiidL~ 98 (279)
T 2fzv_A 56 APPVRILLLYGS--LR-ARSFSRLAVEEAARLLQFFGAETRIFDPS 98 (279)
T ss_dssp CSCCEEEEEESC--CS-SSCHHHHHHHHHHHHHHHTTCEEEEBCCT
T ss_pred CCCCEEEEEEeC--CC-CCCHHHHHHHHHHHHHhhCCCEEEEEehh
Confidence 346899999975 53 23334556666788888889999998644
No 230
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=26.58 E-value=30 Score=33.12 Aligned_cols=38 Identities=18% Similarity=0.198 Sum_probs=27.8
Q ss_pred CCceEEEEeeeecCcccccc--HHHHhccchHHHHhCCCeEEEEeec
Q 007247 83 VGLNILFVGTEVAPWSKTGG--LGDVLGGLPPALAANGHRVMTIAPR 127 (611)
Q Consensus 83 ~~MkIl~v~~~~~P~~~~GG--~~~~~~~La~~L~~~Gh~V~vit~~ 127 (611)
++|||+.|++. .|| -.....+||.+|+ +|++|.+|=..
T Consensus 25 ~~~~vI~v~s~------kGGvGKTT~a~~LA~~la-~g~~VlliD~D 64 (267)
T 3k9g_A 25 KKPKIITIASI------KGGVGKSTSAIILATLLS-KNNKVLLIDMD 64 (267)
T ss_dssp -CCEEEEECCS------SSSSCHHHHHHHHHHHHT-TTSCEEEEEEC
T ss_pred CCCeEEEEEeC------CCCchHHHHHHHHHHHHH-CCCCEEEEECC
Confidence 35777766643 354 4567788999999 99999999655
No 231
>2pi1_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, 3D-structure, structural genomics, NPPSFA; HET: MSE NAD; 2.12A {Aquifex aeolicus VF5} PDB: 3kb6_A*
Probab=26.49 E-value=1.9e+02 Score=28.83 Aligned_cols=44 Identities=23% Similarity=0.311 Sum_probs=31.8
Q ss_pred HHHHHHHccEEEe--CCCCCC---CcHHHHHHHHcCCceEEcCCccccc
Q 007247 470 AHMIIAGADFILI--PSRFEP---CGLIQLHAMRYGTVPIVASTGGLVD 513 (611)
Q Consensus 470 ~~~i~~~aDv~l~--pS~~E~---~gl~~lEAma~G~PvI~s~~gg~~e 513 (611)
+.++++.||++++ |...|+ ++-..++.|--|.-+|-+..|++.+
T Consensus 188 l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~aRg~~vd 236 (334)
T 2pi1_A 188 LDELLKESDVISLHVPYTKETHHMINEERISLMKDGVYLINTARGKVVD 236 (334)
T ss_dssp HHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTEEEEECSCGGGBC
T ss_pred HHHHHhhCCEEEEeCCCChHHHHhhCHHHHhhCCCCcEEEECCCCcccC
Confidence 5578999999876 333344 4456788888888888888887554
No 232
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=26.44 E-value=2.6e+02 Score=22.68 Aligned_cols=111 Identities=10% Similarity=0.086 Sum_probs=63.9
Q ss_pred CCcEEEEEeCCCchhHHHHHHHHHHCCCceEEe-cccChHHHHHHHH--HccEEEeCCCC-CCCcHHHHHHHHc---CCc
Q 007247 430 ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGV-AKFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMRY---GTV 502 (611)
Q Consensus 430 ~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~-~~~~~~~~~~i~~--~aDv~l~pS~~-E~~gl~~lEAma~---G~P 502 (611)
...+++|+.+.+. ..+.+..+....++ +... ..-+...+...+. ..|++++-... +.-|+.+++.+.. ..|
T Consensus 8 ~~~~iLivdd~~~-~~~~l~~~L~~~~~-~~~v~~~~~~~~al~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ 85 (143)
T 2qv0_A 8 EKMKVIIVEDEFL-AQQELSWLINTHSQ-MEIVGSFDDGLDVLKFLQHNKVDAIFLDINIPSLDGVLLAQNISQFAHKPF 85 (143)
T ss_dssp --CEEEEECSCHH-HHHHHHHHHHHHSC-CEEEEEESCHHHHHHHHHHCCCSEEEECSSCSSSCHHHHHHHHTTSTTCCE
T ss_pred CceEEEEEcCCHH-HHHHHHHHHHhCCC-ceEEEEeCCHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHccCCCce
Confidence 3567788876543 44445444443321 2212 2223333333443 35888876544 4467778887764 344
Q ss_pred eEE-cCC-cccccceecCcceEEecccccccccCCccCHHHHHHHHHHHHHh
Q 007247 503 PIV-AST-GGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (611)
Q Consensus 503 vI~-s~~-gg~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~~la~~i~~ll~~ 552 (611)
+|. +.. ....+.+..|..+++. .|-+.+++...|.+++..
T Consensus 86 ii~~s~~~~~~~~~~~~g~~~~l~----------KP~~~~~l~~~i~~~~~~ 127 (143)
T 2qv0_A 86 IVFITAWKEHAVEAFELEAFDYIL----------KPYQESRIINMLQKLTTA 127 (143)
T ss_dssp EEEEESCCTTHHHHHHTTCSEEEE----------SSCCHHHHHHHHHHHHHH
T ss_pred EEEEeCCHHHHHHHHhCCcceEEe----------CCCCHHHHHHHHHHHHHH
Confidence 443 332 2233344567788887 899999999999998875
No 233
>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*
Probab=26.40 E-value=43 Score=31.11 Aligned_cols=34 Identities=21% Similarity=0.351 Sum_probs=24.6
Q ss_pred ceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEeec
Q 007247 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (611)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~~ 127 (611)
||.++|+.- .||+| ..+++.|+++|++|.++...
T Consensus 2 ~k~vlITGa------s~gIG---~~ia~~l~~~G~~V~~~~r~ 35 (235)
T 3l77_A 2 MKVAVITGA------SRGIG---EAIARALARDGYALALGARS 35 (235)
T ss_dssp CCEEEEESC------SSHHH---HHHHHHHHHTTCEEEEEESC
T ss_pred CCEEEEECC------CcHHH---HHHHHHHHHCCCEEEEEeCC
Confidence 677777632 35666 46889999999998887644
No 234
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=26.16 E-value=2.6e+02 Score=22.57 Aligned_cols=109 Identities=5% Similarity=0.079 Sum_probs=60.6
Q ss_pred CCcEEEEEeCCCchhHHHHHHHHHHCCCceEEecccChHHHHHHHH---HccEEEeCCCC-CCCcHHHHHHHHc---CCc
Q 007247 430 ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA---GADFILIPSRF-EPCGLIQLHAMRY---GTV 502 (611)
Q Consensus 430 ~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~i~~---~aDv~l~pS~~-E~~gl~~lEAma~---G~P 502 (611)
+..+++|+.+.. ...+.+.......+-.+. ..-+.......+. ..|++++-... +.-|+.+++.+.. .+|
T Consensus 14 ~~~~ilivdd~~-~~~~~l~~~L~~~g~~v~--~~~~~~~al~~l~~~~~~dlvilD~~l~~~~g~~~~~~l~~~~~~~~ 90 (138)
T 2b4a_A 14 QPFRVTLVEDEP-SHATLIQYHLNQLGAEVT--VHPSGSAFFQHRSQLSTCDLLIVSDQLVDLSIFSLLDIVKEQTKQPS 90 (138)
T ss_dssp CCCEEEEECSCH-HHHHHHHHHHHHTTCEEE--EESSHHHHHHTGGGGGSCSEEEEETTCTTSCHHHHHHHHTTSSSCCE
T ss_pred CCCeEEEECCCH-HHHHHHHHHHHHcCCEEE--EeCCHHHHHHHHHhCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCC
Confidence 456777777544 344445544444432222 2223333333443 36888876544 3457778888764 566
Q ss_pred eEEc--CCcccccceecCcceEEecccccccccCCccCHHHHHHHHHHHHHh
Q 007247 503 PIVA--STGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (611)
Q Consensus 503 vI~s--~~gg~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~~la~~i~~ll~~ 552 (611)
+|.- ....... ..--..+++. .|.+.+++...|.+++..
T Consensus 91 ii~ls~~~~~~~~-~~~~~~~~l~----------KP~~~~~L~~~i~~~~~~ 131 (138)
T 2b4a_A 91 VLILTTGRHELIE-SSEHNLSYLQ----------KPFAISELRAAIDYHKPS 131 (138)
T ss_dssp EEEEESCC--CCC-CSSSCEEEEE----------SSCCHHHHHHHHHHTCCC
T ss_pred EEEEECCCCCHHH-HHHHHHheee----------CCCCHHHHHHHHHHHHHh
Confidence 6553 3222211 1111567776 889999999999988764
No 235
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=26.15 E-value=2.7e+02 Score=25.90 Aligned_cols=67 Identities=16% Similarity=0.161 Sum_probs=36.3
Q ss_pred HHccEEEeCCCC-C----CCcHHHHHHHH--cCCceEEcCCcc----cccceecCcceEEecccccccccCCccCHHHHH
Q 007247 475 AGADFILIPSRF-E----PCGLIQLHAMR--YGTVPIVASTGG----LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVS 543 (611)
Q Consensus 475 ~~aDv~l~pS~~-E----~~gl~~lEAma--~G~PvI~s~~gg----~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~~la 543 (611)
.+++.+++.+.. + +..+..++.+. .++|+|++..-. +.++.+-|..|+++|+--.. .+.++.+..
T Consensus 164 ~G~~~i~~~~~~~~g~~~g~~~~~i~~l~~~~~ipvia~GGI~~~~d~~~~~~~Gadgv~vgsal~~----~~~~~~~~~ 239 (252)
T 1ka9_F 164 LGAGEILLTSMDRDGTKEGYDLRLTRMVAEAVGVPVIASGGAGRMEHFLEAFQAGAEAALAASVFHF----GEIPIPKLK 239 (252)
T ss_dssp HTCCEEEEEETTTTTTCSCCCHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHT----TSSCHHHHH
T ss_pred cCCCEEEEecccCCCCcCCCCHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHCCCHHHHHHHHHHc----CCCCHHHHH
Confidence 347877765432 2 23466666654 389999974211 22334446788888743221 333555554
Q ss_pred HH
Q 007247 544 TT 545 (611)
Q Consensus 544 ~~ 545 (611)
+.
T Consensus 240 ~~ 241 (252)
T 1ka9_F 240 RY 241 (252)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 236
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=25.98 E-value=2.8e+02 Score=24.27 Aligned_cols=106 Identities=14% Similarity=0.052 Sum_probs=59.5
Q ss_pred CcEEEEEeCCCchhHHHHHHHHHHCCCceEEecccChHHHHHHHHHccEEEeCCCCCCC-cHHHHHHHH---cCCceEEc
Q 007247 431 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPC-GLIQLHAMR---YGTVPIVA 506 (611)
Q Consensus 431 ~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~i~~~aDv~l~pS~~E~~-gl~~lEAma---~G~PvI~s 506 (611)
+.+++|+.+.+. ..+.+..+....+-.+.....-. +. +-...|++++-....+. |+ +.+.+. ..+|+|.-
T Consensus 12 ~~~iLivdd~~~-~~~~l~~~L~~~g~~v~~~~~~~-~a---l~~~~dlvl~D~~mp~~~g~-l~~~~~~~~~~~~ii~l 85 (196)
T 1qo0_D 12 ELQVLVLNPPGE-VSDALVLQLIRIGCSVRQCWPPP-EA---FDVPVDVVFTSIFQNRHHDE-IAALLAAGTPRTTLVAL 85 (196)
T ss_dssp GCEEEEESCTTH-HHHHHHHHHHHHTCEEEEECSCC-SS---CSSCCSEEEEECCSSTHHHH-HHHHHHHSCTTCEEEEE
T ss_pred CCeEEEEcCChh-HHHHHHHHHHHcCCeEEEecCch-hh---CCCCCCEEEEeCCCCccchH-HHHHHhccCCCCCEEEE
Confidence 467778776653 33334433333332233222111 11 11356888775554332 55 666555 45777654
Q ss_pred -CCcc---cccceecCcceEEecccccccccCCccCHHHHHHHHHHHHHh
Q 007247 507 -STGG---LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (611)
Q Consensus 507 -~~gg---~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~~la~~i~~ll~~ 552 (611)
..+. ..+.+..|..+++. .|-+.+++...|..++..
T Consensus 86 t~~~~~~~~~~a~~~ga~~~l~----------KP~~~~~L~~~l~~~~~~ 125 (196)
T 1qo0_D 86 VEYESPAVLSQIIELECHGVIT----------QPLDAHRVLPVLVSARRI 125 (196)
T ss_dssp ECCCSHHHHHHHHHHTCSEEEE----------SSCCGGGHHHHHHHHHHH
T ss_pred EcCCChHHHHHHHHcCCCeeEe----------cCcCHHHHHHHHHHHHHH
Confidence 3322 22344557888987 888999999999988865
No 237
>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2
Probab=25.92 E-value=48 Score=31.57 Aligned_cols=33 Identities=21% Similarity=0.368 Sum_probs=23.1
Q ss_pred eEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEeec
Q 007247 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (611)
Q Consensus 86 kIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~~ 127 (611)
|.++|+.- .||+|. .+++.|+++|++|.++..+
T Consensus 8 k~vlVTGa------s~gIG~---~ia~~l~~~G~~V~~~~r~ 40 (267)
T 2gdz_A 8 KVALVTGA------AQGIGR---AFAEALLLKGAKVALVDWN 40 (267)
T ss_dssp CEEEEETT------TSHHHH---HHHHHHHHTTCEEEEEESC
T ss_pred CEEEEECC------CCcHHH---HHHHHHHHCCCEEEEEECC
Confidence 55566531 466664 4788899999999988643
No 238
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=25.88 E-value=40 Score=34.17 Aligned_cols=37 Identities=16% Similarity=0.273 Sum_probs=27.6
Q ss_pred ceEEEEeeeecCccccccH--HHHhccchHHHHhCCCeEEEEeec
Q 007247 85 LNILFVGTEVAPWSKTGGL--GDVLGGLPPALAANGHRVMTIAPR 127 (611)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~--~~~~~~La~~L~~~Gh~V~vit~~ 127 (611)
|||+.|.+. .||+ .+.+.+||.+|++.|++|.+|=..
T Consensus 1 MkvIav~s~------KGGvGKTT~a~nLA~~LA~~G~rVLlID~D 39 (361)
T 3pg5_A 1 MRTISFFNN------KGGVGKTTLSTNVAHYFALQGKRVLYVDCD 39 (361)
T ss_dssp CEEEEBCCS------SCCHHHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CeEEEEEcC------CCCCcHHHHHHHHHHHHHhCCCcEEEEEcC
Confidence 676666643 4554 456677999999999999999654
No 239
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=25.83 E-value=80 Score=25.78 Aligned_cols=45 Identities=7% Similarity=-0.127 Sum_probs=31.8
Q ss_pred CCCceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEeecCCccc
Q 007247 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYK 132 (611)
Q Consensus 82 ~~~MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~~~~~~~ 132 (611)
|..|||+.++.. .-+.+.++..+-+.+.++|.++.+......+..
T Consensus 1 M~mkkIll~Cg~------G~sTS~l~~k~~~~~~~~gi~~~i~a~~~~~~~ 45 (106)
T 1e2b_A 1 MEKKHIYLFSSA------GMSTSLLVSKMRAQAEKYEVPVIIEAFPETLAG 45 (106)
T ss_dssp CCCEEEEEECSS------STTTHHHHHHHHHHHHHSCCSEEEEEECSSSTT
T ss_pred CCCcEEEEECCC------chhHHHHHHHHHHHHHHCCCCeEEEEecHHHHH
Confidence 345789999864 224456677788888899999998876655433
No 240
>1p9o_A Phosphopantothenoylcysteine synthetase; ligase; 2.30A {Homo sapiens} SCOP: c.72.3.1
Probab=25.74 E-value=52 Score=32.77 Aligned_cols=23 Identities=17% Similarity=0.034 Sum_probs=19.0
Q ss_pred HHhccchHHHHhCCCeEEEEeec
Q 007247 105 DVLGGLPPALAANGHRVMTIAPR 127 (611)
Q Consensus 105 ~~~~~La~~L~~~Gh~V~vit~~ 127 (611)
.+-..+|+++.++|++|++++..
T Consensus 66 kmG~aiAe~~~~~Ga~V~lv~g~ 88 (313)
T 1p9o_A 66 RRGATSAEAFLAAGYGVLFLYRA 88 (313)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEET
T ss_pred HHHHHHHHHHHHCCCEEEEEecC
Confidence 34455899999999999999865
No 241
>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*
Probab=25.74 E-value=40 Score=34.37 Aligned_cols=34 Identities=21% Similarity=0.288 Sum_probs=25.4
Q ss_pred CCCceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEee
Q 007247 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAP 126 (611)
Q Consensus 82 ~~~MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~ 126 (611)
++.++|++|..- | .|+. +|..|+++|++|+|+=.
T Consensus 21 ~~~~dV~IVGaG--~----aGl~-----~A~~La~~G~~V~v~E~ 54 (407)
T 3rp8_A 21 QGHMKAIVIGAG--I----GGLS-----AAVALKQSGIDCDVYEA 54 (407)
T ss_dssp --CCEEEEECCS--H----HHHH-----HHHHHHHTTCEEEEEES
T ss_pred CCCCEEEEECCC--H----HHHH-----HHHHHHhCCCCEEEEeC
Confidence 456899999853 2 4555 78889999999999943
No 242
>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*
Probab=25.65 E-value=42 Score=33.83 Aligned_cols=25 Identities=32% Similarity=0.323 Sum_probs=19.0
Q ss_pred cccHHHHhccchHHHHhCCCeEEEEeec
Q 007247 100 TGGLGDVLGGLPPALAANGHRVMTIAPR 127 (611)
Q Consensus 100 ~GG~~~~~~~La~~L~~~Gh~V~vit~~ 127 (611)
+|++| ..|++.|.++||+|.++...
T Consensus 37 tG~IG---~~l~~~L~~~g~~V~~~~r~ 61 (381)
T 1n7h_A 37 TGQDG---SYLTEFLLGKGYEVHGLIRR 61 (381)
T ss_dssp TSHHH---HHHHHHHHHTTCEEEEEECC
T ss_pred CchHH---HHHHHHHHHCCCEEEEEecC
Confidence 35555 45788899999999998754
No 243
>2nzw_A Alpha1,3-fucosyltransferase; FUCT, GT 10; 1.90A {Helicobacter pylori} SCOP: c.87.1.11 PDB: 2nzx_A* 2nzy_A*
Probab=25.62 E-value=94 Score=31.70 Aligned_cols=79 Identities=14% Similarity=0.084 Sum_probs=52.5
Q ss_pred HHHHHccEEEeC--CCCCCC-cHHHHHHHHcCCceEEcCCcccccceecCcceEEecccccccccCCccCHHHHHHHHHH
Q 007247 472 MIIAGADFILIP--SRFEPC-GLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRR 548 (611)
Q Consensus 472 ~i~~~aDv~l~p--S~~E~~-gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~~la~~i~~ 548 (611)
++++..-+.|.- |..+.+ -=++.+|+.+|+.+|+-....+.+.+.. ..|+- + -+-.++++||+.|+.
T Consensus 227 ~~l~~YKFyLafENs~c~dYvTEK~~~al~~g~VPI~~G~~~~~~~~Pp--~SfI~----~----~dF~s~~~La~yL~~ 296 (371)
T 2nzw_A 227 EFLSQYKFNLCFENTQGYGYVTEKIIDAYFSHTIPIYWGSPSVAKDFNP--KSFVN----V----HDFKNFDEAIDYIKY 296 (371)
T ss_dssp HHHTTEEEEEEECSSCCTTCCCTHHHHHHHTTCEEEEESCTTGGGTSCG--GGSEE----G----GGSSSHHHHHHHHHH
T ss_pred HHHhcCcEEEEEeccCCCCcccHHHHHHHhCCeEEEEECCCchhhhCCC--CceEE----c----ccCCCHHHHHHHHHH
Confidence 466777766542 333332 3367899999999888766666666643 23431 1 155789999999999
Q ss_pred HHHhcCHHHHHHHH
Q 007247 549 ALATYGTQALAEMM 562 (611)
Q Consensus 549 ll~~~~~~~~~~~~ 562 (611)
|-+| +.++.+.-
T Consensus 297 L~~n--~~~Y~~y~ 308 (371)
T 2nzw_A 297 LHTH--KNAYLDML 308 (371)
T ss_dssp HHTC--HHHHHHHH
T ss_pred HhcC--HHHHHHHH
Confidence 9887 76766554
No 244
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=25.57 E-value=50 Score=31.14 Aligned_cols=40 Identities=8% Similarity=-0.005 Sum_probs=30.3
Q ss_pred ceEEEEeeeecCccccccHHHHhccchHHHHhC-CCeEEEEeec
Q 007247 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAAN-GHRVMTIAPR 127 (611)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~-Gh~V~vit~~ 127 (611)
|||++|... |. ..|-...++..++..|.+. |++|.++-..
T Consensus 2 mkIliI~gS--~r-~~s~T~~la~~i~~~l~~~~g~~v~~~dl~ 42 (242)
T 1sqs_A 2 NKIFIYAGV--RN-HNSKTLEYTKRLSSIISSRNNVDISFRTPF 42 (242)
T ss_dssp CEEEEEECC--CC-TTCHHHHHHHHHHHHHHHHSCCEEEEECTT
T ss_pred CeEEEEECC--CC-CCChHHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 799999864 54 3355677777788888887 9999988644
No 245
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=25.43 E-value=4.2e+02 Score=24.71 Aligned_cols=110 Identities=11% Similarity=0.118 Sum_probs=66.4
Q ss_pred CCcEEEEEeCCCchhHHHHHHHHHHCCCceEEecccChHHHHHHHHH---ccEEEeCCCC-CCCcHHHHHHHHc-----C
Q 007247 430 ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAG---ADFILIPSRF-EPCGLIQLHAMRY-----G 500 (611)
Q Consensus 430 ~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~i~~~---aDv~l~pS~~-E~~gl~~lEAma~-----G 500 (611)
...+++|+-+.+. ..+.+..........+ ...-+....-..+.. .|++++--.. +.-|+-+++.+.. .
T Consensus 123 ~~~~ILivDD~~~-~~~~l~~~L~~~~~~v--~~a~~~~eal~~l~~~~~~dlvllD~~mP~~dG~~l~~~lr~~~~~~~ 199 (259)
T 3luf_A 123 QQIEVLVVDDSRT-SRHRTMAQLRKQLLQV--HEASHAREALATLEQHPAIRLVLVDYYMPEIDGISLVRMLRERYSKQQ 199 (259)
T ss_dssp TTCEEEEECSCHH-HHHHHHHHHHTTTCEE--EEESSHHHHHHHHHHCTTEEEEEECSCCSSSCHHHHHHHHHHHCCTTT
T ss_pred CCCcEEEEeCCHH-HHHHHHHHHHHcCcEE--EEeCCHHHHHHHHhcCCCCCEEEEcCCCCCCCHHHHHHHHHhccCCCC
Confidence 5678888876542 3344444333333222 222344444445543 4777765443 4467888777753 4
Q ss_pred CceEEc-CCcc---cccceecCcceEEecccccccccCCccCHHHHHHHHHHHHHh
Q 007247 501 TVPIVA-STGG---LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (611)
Q Consensus 501 ~PvI~s-~~gg---~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~~la~~i~~ll~~ 552 (611)
+|+|+. .... ..+.++.|..+|+. .|-+.+++...|.++++.
T Consensus 200 ~~ii~~s~~~~~~~~~~a~~~Ga~~yl~----------KP~~~~~L~~~i~~~l~~ 245 (259)
T 3luf_A 200 LAIIGISVSDKRGLSARYLKQGANDFLN----------QPFEPEELQCRVSHNLEA 245 (259)
T ss_dssp SEEEEEECSSSSSHHHHHHHTTCSEEEE----------SSCCHHHHHHHHHHHHHH
T ss_pred CeEEEEEccCCHHHHHHHHhcChhheEc----------CCCCHHHHHHHHHHHHHh
Confidence 677643 3222 22234568889987 999999999999998875
No 246
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Probab=25.21 E-value=39 Score=33.32 Aligned_cols=32 Identities=6% Similarity=0.050 Sum_probs=26.0
Q ss_pred CceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEeec
Q 007247 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (611)
Q Consensus 84 ~MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~~ 127 (611)
+|||++++. | ....+++++.++||+|.++.+.
T Consensus 2 ~m~Ililg~---------g---~~~~l~~a~~~~G~~v~~~~~~ 33 (334)
T 2r85_A 2 KVRIATYAS---------H---SALQILKGAKDEGFETIAFGSS 33 (334)
T ss_dssp CSEEEEESS---------T---THHHHHHHHHHTTCCEEEESCG
T ss_pred ceEEEEECC---------h---hHHHHHHHHHhCCCEEEEEECC
Confidence 589999884 2 3456889999999999999876
No 247
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=25.15 E-value=2.7e+02 Score=22.36 Aligned_cols=108 Identities=13% Similarity=0.147 Sum_probs=63.4
Q ss_pred cEEEEEeCCCchhHHHHHHHHHHCCCceEEecccChHHHHHHHH--HccEEEeCCCC-CCCcHHHHHHHH---cCCceEE
Q 007247 432 VQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMR---YGTVPIV 505 (611)
Q Consensus 432 ~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~i~~--~aDv~l~pS~~-E~~gl~~lEAma---~G~PvI~ 505 (611)
.+++|+.+.+ ...+.++.+....+-.+. ..-+....-..+. ..|++++-... +.-|+.+++.+. .++|+|.
T Consensus 4 ~~Ilivdd~~-~~~~~l~~~L~~~g~~v~--~~~~~~~al~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~ 80 (132)
T 3crn_A 4 KRILIVDDDT-AILDSTKQILEFEGYEVE--IAATAGEGLAKIENEFFNLALFXIKLPDMEGTELLEKAHKLRPGMKKIM 80 (132)
T ss_dssp CEEEEECSCH-HHHHHHHHHHHHTTCEEE--EESSHHHHHHHHHHSCCSEEEECSBCSSSBHHHHHHHHHHHCTTSEEEE
T ss_pred cEEEEEeCCH-HHHHHHHHHHHHCCceEE--EeCCHHHHHHHHhcCCCCEEEEecCCCCCchHHHHHHHHhhCCCCcEEE
Confidence 4566776544 344555555444442232 2223333333443 35888875543 335677777664 3567665
Q ss_pred c-CCcc---cccceecCcceEEecccccccccCCccCHHHHHHHHHHHHHh
Q 007247 506 A-STGG---LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (611)
Q Consensus 506 s-~~gg---~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~~la~~i~~ll~~ 552 (611)
- .... ..+.+..|..+++. .|.+.+++..+|.+++..
T Consensus 81 ~s~~~~~~~~~~~~~~ga~~~l~----------KP~~~~~L~~~i~~~~~~ 121 (132)
T 3crn_A 81 VTGYASLENSVFSLNAGADAYIM----------KPVNPRDLLEKIKEKLDE 121 (132)
T ss_dssp EESCCCHHHHHHHHHTTCSEEEE----------SSCCHHHHHHHHHHHHHH
T ss_pred EeccccHHHHHHHHhccchhhcc----------CCCCHHHHHHHHHHHHhc
Confidence 4 3322 23345567889987 899999999999998864
No 248
>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}
Probab=24.97 E-value=1.1e+02 Score=30.43 Aligned_cols=93 Identities=16% Similarity=0.202 Sum_probs=59.1
Q ss_pred CcEEEEEcCcccccCHHHHHHHHHhcccCCcEEEEEeCCCchhHHHHHHHHHHCCCceEEecccChHHHHHHHHH--ccE
Q 007247 402 IPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAG--ADF 479 (611)
Q Consensus 402 ~~~il~iGrl~~~Kg~d~li~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~i~~~--aDv 479 (611)
...++.+|-=.- |...++.++..+ ++++++-+.+.+ .+..++++.+++.. .. |. ...++++. .|+
T Consensus 23 mirigiIG~G~i--g~~~~~~~~~~~--~~~~lvav~d~~---~~~a~~~a~~~g~~-~~---y~--d~~ell~~~~iDa 89 (350)
T 4had_A 23 MLRFGIISTAKI--GRDNVVPAIQDA--ENCVVTAIASRD---LTRAREMADRFSVP-HA---FG--SYEEMLASDVIDA 89 (350)
T ss_dssp CEEEEEESCCHH--HHHTHHHHHHHC--SSEEEEEEECSS---HHHHHHHHHHHTCS-EE---ES--SHHHHHHCSSCSE
T ss_pred ccEEEEEcChHH--HHHHHHHHHHhC--CCeEEEEEECCC---HHHHHHHHHHcCCC-ee---eC--CHHHHhcCCCCCE
Confidence 356888875211 122345666655 688988777665 34566777776621 11 21 23456654 689
Q ss_pred EEeCCCCCCCcHHHHHHHHcCCceEEcC
Q 007247 480 ILIPSRFEPCGLIQLHAMRYGTVPIVAS 507 (611)
Q Consensus 480 ~l~pS~~E~~gl~~lEAma~G~PvI~s~ 507 (611)
+++.+....-.-..++|+..|++|+|-.
T Consensus 90 V~I~tP~~~H~~~~~~al~aGkhVl~EK 117 (350)
T 4had_A 90 VYIPLPTSQHIEWSIKAADAGKHVVCEK 117 (350)
T ss_dssp EEECSCGGGHHHHHHHHHHTTCEEEECS
T ss_pred EEEeCCCchhHHHHHHHHhcCCEEEEeC
Confidence 9888876555566789999999999865
No 249
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=24.95 E-value=58 Score=29.30 Aligned_cols=41 Identities=5% Similarity=-0.006 Sum_probs=29.2
Q ss_pred ceEEEEeeeecCccccccHHHHhccchHHHHhCC--CeEEEEeec
Q 007247 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANG--HRVMTIAPR 127 (611)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~G--h~V~vit~~ 127 (611)
|||++|... |....|-...++..++..+.+.| ++|.++-..
T Consensus 2 mkilii~~S--~~~~~s~t~~la~~~~~~l~~~g~~~~v~~~dl~ 44 (201)
T 1t5b_A 2 SKVLVLKSS--ILAGYSQSGQLTDYFIEQWREKHVADEITVRDLA 44 (201)
T ss_dssp CEEEEEECC--SSGGGCHHHHHHHHHHHHHHHHCTTCEEEEEETT
T ss_pred CeEEEEEeC--CCCCCChHHHHHHHHHHHHHHhCCCCeEEEEecc
Confidence 799999864 53112556666777888888876 899888654
No 250
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=24.93 E-value=51 Score=30.67 Aligned_cols=41 Identities=10% Similarity=0.040 Sum_probs=28.9
Q ss_pred CCceEEEEeeeecCccccccHHHHhccchHHHHhC-CCeEEEEeec
Q 007247 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAAN-GHRVMTIAPR 127 (611)
Q Consensus 83 ~~MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~-Gh~V~vit~~ 127 (611)
.+|||+.|++.- + .-|-.....+||.+|+++ |++|.++=..
T Consensus 2 ~~~~vI~v~s~k-G---GvGKTt~a~~LA~~la~~~g~~VlliD~D 43 (245)
T 3ea0_A 2 NAKRVFGFVSAK-G---GDGGSCIAANFAFALSQEPDIHVLAVDIS 43 (245)
T ss_dssp -CCEEEEEEESS-T---TSSHHHHHHHHHHHHTTSTTCCEEEEECC
T ss_pred CCCeEEEEECCC-C---CcchHHHHHHHHHHHHhCcCCCEEEEECC
Confidence 357776666531 1 234566778899999999 9999999655
No 251
>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}
Probab=24.86 E-value=45 Score=32.49 Aligned_cols=25 Identities=20% Similarity=0.213 Sum_probs=18.8
Q ss_pred cccHHHHhccchHHHHhCCCeEEEEeec
Q 007247 100 TGGLGDVLGGLPPALAANGHRVMTIAPR 127 (611)
Q Consensus 100 ~GG~~~~~~~La~~L~~~Gh~V~vit~~ 127 (611)
+|++| ..|++.|.++||+|.++...
T Consensus 21 tG~iG---~~l~~~L~~~G~~V~~~~r~ 45 (321)
T 2pk3_A 21 AGFVG---KYLANHLTEQNVEVFGTSRN 45 (321)
T ss_dssp TSHHH---HHHHHHHHHTTCEEEEEESC
T ss_pred CChHH---HHHHHHHHHCCCEEEEEecC
Confidence 35555 55788899999999998654
No 252
>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}
Probab=24.69 E-value=43 Score=35.68 Aligned_cols=34 Identities=26% Similarity=0.554 Sum_probs=25.4
Q ss_pred CceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEeec
Q 007247 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (611)
Q Consensus 84 ~MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~~ 127 (611)
+|||++.+. +|.+| ..|++.|.++||+|.+++..
T Consensus 147 ~m~VLVTGa-------tG~IG---~~l~~~L~~~G~~V~~l~R~ 180 (516)
T 3oh8_A 147 PLTVAITGS-------RGLVG---RALTAQLQTGGHEVIQLVRK 180 (516)
T ss_dssp CCEEEEEST-------TSHHH---HHHHHHHHHTTCEEEEEESS
T ss_pred CCEEEEECC-------CCHHH---HHHHHHHHHCCCEEEEEECC
Confidence 588876653 35555 45788899999999999765
No 253
>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}
Probab=24.68 E-value=43 Score=31.04 Aligned_cols=25 Identities=32% Similarity=0.413 Sum_probs=19.0
Q ss_pred cccHHHHhccchHHHHhCCCeEEEEeec
Q 007247 100 TGGLGDVLGGLPPALAANGHRVMTIAPR 127 (611)
Q Consensus 100 ~GG~~~~~~~La~~L~~~Gh~V~vit~~ 127 (611)
.||+| ..+++.|+++|++|.++...
T Consensus 14 sggiG---~~~a~~l~~~G~~V~~~~r~ 38 (234)
T 2ehd_A 14 SRGIG---EATARLLHAKGYRVGLMARD 38 (234)
T ss_dssp TSHHH---HHHHHHHHHTTCEEEEEESC
T ss_pred CcHHH---HHHHHHHHHCCCEEEEEECC
Confidence 35555 45888899999999888643
No 254
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=24.61 E-value=4.2e+02 Score=24.51 Aligned_cols=66 Identities=15% Similarity=0.170 Sum_probs=42.5
Q ss_pred ccEEEeCCCC-CCCcHHHHHHHH---cCCceEEcCCcc----cccceecCcceEEecccccccccCCccCHHHHHHHHHH
Q 007247 477 ADFILIPSRF-EPCGLIQLHAMR---YGTVPIVASTGG----LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRR 548 (611)
Q Consensus 477 aDv~l~pS~~-E~~gl~~lEAma---~G~PvI~s~~gg----~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~~la~~i~~ 548 (611)
.|++++--.. +.-|+.+++.+. ..+|+|+-.... ..+.+..|..+++. .|-+.+++.+.|.+
T Consensus 174 ~dlvl~D~~mp~~~G~~l~~~ir~~~~~~piI~lt~~~~~~~~~~~~~~G~~~~l~----------KP~~~~~L~~~l~~ 243 (254)
T 2ayx_A 174 IDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLS----------KPVTLDVIKQTLTL 243 (254)
T ss_dssp CSEEEEEESSCSSCCHHHHHHHHHHHCCSCEEEEESSTTSHHHHHHHHCCCEEEEE----------SSCCHHHHHHHHHH
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCCCcEEEEECCCCHHHHHHHHHcCCceEEE----------CCCCHHHHHHHHHH
Confidence 4766653322 334666555553 467877643322 22334457788887 89999999999999
Q ss_pred HHHh
Q 007247 549 ALAT 552 (611)
Q Consensus 549 ll~~ 552 (611)
++..
T Consensus 244 ~~~~ 247 (254)
T 2ayx_A 244 YAER 247 (254)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8864
No 255
>3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa, nitroreductase, flavodoxin, oxidoreductase; HET: FMN NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* 3keg_A*
Probab=24.61 E-value=51 Score=30.36 Aligned_cols=40 Identities=18% Similarity=0.050 Sum_probs=28.3
Q ss_pred ceEEEEeeeecCcccccc-HHHHhccchHHHHhC--CCeEEEEeec
Q 007247 85 LNILFVGTEVAPWSKTGG-LGDVLGGLPPALAAN--GHRVMTIAPR 127 (611)
Q Consensus 85 MkIl~v~~~~~P~~~~GG-~~~~~~~La~~L~~~--Gh~V~vit~~ 127 (611)
|||++|... |. ..+| ...+...++..+.+. |++|.++-..
T Consensus 2 mkiLii~gS--pr-~~~s~t~~l~~~~~~~~~~~~~g~~v~~~dL~ 44 (212)
T 3r6w_A 2 SRILAVHAS--PR-GERSQSRRLAEVFLAAYREAHPQARVARREVG 44 (212)
T ss_dssp CCEEEEECC--SC-STTCHHHHHHHHHHHHHHHHCTTCCEEEEESS
T ss_pred CEEEEEEeC--CC-CCCCHHHHHHHHHHHHHHHhCCCCeEEEEECC
Confidence 899999974 53 2133 455666677788777 9999998654
No 256
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=24.31 E-value=65 Score=31.08 Aligned_cols=39 Identities=21% Similarity=0.155 Sum_probs=28.1
Q ss_pred CceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEeec
Q 007247 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (611)
Q Consensus 84 ~MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~~ 127 (611)
+||++.|+ . -+ .-|-.+...+||.+|+++|++|.+|=..
T Consensus 1 ~MkvIavs-~-KG---GvGKTT~a~nLA~~La~~G~rVlliD~D 39 (289)
T 2afh_E 1 AMRQCAIY-G-KG---GIGKSTTTQNLVAALAEMGKKVMIVGCD 39 (289)
T ss_dssp CCEEEEEE-E-CT---TSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CceEEEEe-C-CC---cCcHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 47877665 2 11 2355567789999999999999998544
No 257
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase; HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10 PDB: 2acw_A*
Probab=24.30 E-value=37 Score=35.77 Aligned_cols=39 Identities=10% Similarity=0.176 Sum_probs=29.8
Q ss_pred CceEEEEeeeecCccccccHHHHhccchHHHHhC--CCeEEEEeecC
Q 007247 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAAN--GHRVMTIAPRY 128 (611)
Q Consensus 84 ~MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~--Gh~V~vit~~~ 128 (611)
+++|+++.. | ..|--.=+..|++.|+++ ||+|+++++..
T Consensus 9 ~~~vv~~p~---p---~~GHi~P~l~La~~L~~r~pG~~Vt~v~t~~ 49 (463)
T 2acv_A 9 NSELIFIPA---P---GIGHLASALEFAKLLTNHDKNLYITVFCIKF 49 (463)
T ss_dssp CEEEEEECC---S---STTTHHHHHHHHHHHHHTCTTEEEEEEECCC
T ss_pred CCEEEEEcC---c---ccchHHHHHHHHHHHHhcCCCcEEEEEEcCC
Confidence 578888863 4 244444677899999999 99999998763
No 258
>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*
Probab=24.17 E-value=46 Score=33.98 Aligned_cols=35 Identities=34% Similarity=0.421 Sum_probs=25.2
Q ss_pred CCCceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEeec
Q 007247 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (611)
Q Consensus 82 ~~~MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~~ 127 (611)
|+.|+|++|+.- .+|+. .|..|+++|++|+|+=.+
T Consensus 1 m~~~~v~iiG~G------~~Gl~-----~A~~l~~~g~~v~v~E~~ 35 (384)
T 2bi7_A 1 MKSKKILIVGAG------FSGAV-----IGRQLAEKGHQVHIIDQR 35 (384)
T ss_dssp -CCCEEEEECCS------HHHHH-----HHHHHHTTTCEEEEEESS
T ss_pred CCcCCEEEECcC------HHHHH-----HHHHHHHCCCcEEEEEec
Confidence 345899999852 23444 677889999999999644
No 259
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=24.12 E-value=71 Score=30.43 Aligned_cols=40 Identities=18% Similarity=0.253 Sum_probs=32.2
Q ss_pred CCceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEee
Q 007247 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAP 126 (611)
Q Consensus 83 ~~MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~ 126 (611)
+.||.+||+.. . ..-|-..+...|+++|+++|++|..+=|
T Consensus 19 ~m~k~i~ItgT-~---t~vGKT~vs~gL~~~L~~~G~~V~~fKP 58 (242)
T 3qxc_A 19 FQGHMLFISAT-N---TNAGKTTCARLLAQYCNACGVKTILLKP 58 (242)
T ss_dssp CCCEEEEEEES-S---TTSSHHHHHHHHHHHHHHTTCCEEEECC
T ss_pred hcCcEEEEEeC-C---CCCcHHHHHHHHHHHHHhCCCceEEEee
Confidence 45789999875 1 2457777889999999999999999865
No 260
>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}
Probab=24.06 E-value=2.3e+02 Score=28.90 Aligned_cols=81 Identities=16% Similarity=0.205 Sum_probs=48.8
Q ss_pred CcEEEEEeCCCchhHHHHHHHHHHCCCceEEeccc--------ChHHHHHHHHHccEEEe--CCCCC----C---CcHHH
Q 007247 431 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKF--------NIPLAHMIIAGADFILI--PSRFE----P---CGLIQ 493 (611)
Q Consensus 431 ~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~--------~~~~~~~i~~~aDv~l~--pS~~E----~---~gl~~ 493 (611)
+-++-|+|-|. +-..+.+.....+-++..+-.. ....+.++++.||++++ |...| + ++-..
T Consensus 119 gktvGIIGlG~--IG~~vA~~l~a~G~~V~~~d~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~g~~~T~~li~~~~ 196 (381)
T 3oet_A 119 DRTIGIVGVGN--VGSRLQTRLEALGIRTLLCDPPRAARGDEGDFRTLDELVQEADVLTFHTPLYKDGPYKTLHLADETL 196 (381)
T ss_dssp GCEEEEECCSH--HHHHHHHHHHHTTCEEEEECHHHHHTTCCSCBCCHHHHHHHCSEEEECCCCCCSSTTCCTTSBCHHH
T ss_pred CCEEEEEeECH--HHHHHHHHHHHCCCEEEEECCChHHhccCcccCCHHHHHhhCCEEEEcCcCCccccccchhhcCHHH
Confidence 34566666665 4455544444444333332211 11224578999999876 43434 3 34568
Q ss_pred HHHHHcCCceEEcCCccccc
Q 007247 494 LHAMRYGTVPIVASTGGLVD 513 (611)
Q Consensus 494 lEAma~G~PvI~s~~gg~~e 513 (611)
++.|--|.-+|-+..|++.+
T Consensus 197 l~~mk~gailIN~aRG~vvd 216 (381)
T 3oet_A 197 IRRLKPGAILINACRGPVVD 216 (381)
T ss_dssp HHHSCTTEEEEECSCGGGBC
T ss_pred HhcCCCCcEEEECCCCcccC
Confidence 88888899899988888665
No 261
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=23.93 E-value=34 Score=31.40 Aligned_cols=38 Identities=13% Similarity=0.052 Sum_probs=27.7
Q ss_pred ceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEeec
Q 007247 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (611)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~~ 127 (611)
|||++|... |. .++ ..+...++.++.+.|++|.++-..
T Consensus 2 mkiLiI~gs--p~--~~~-s~l~~~l~~~~~~~g~ev~~~dL~ 39 (192)
T 3f2v_A 2 PKTLIILAH--PN--ISQ-STVHKHWSDAVRQHTDRFTVHELY 39 (192)
T ss_dssp CCEEEEECC--TT--GGG-CSHHHHHHHHHTTCTTTEEEEEHH
T ss_pred CEEEEEEeC--CC--ccH-HHHHHHHHHHHHhCCCeEEEEEch
Confidence 799999974 64 222 356677778888889999988643
No 262
>2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii}
Probab=23.84 E-value=2.5e+02 Score=28.31 Aligned_cols=87 Identities=9% Similarity=0.029 Sum_probs=55.5
Q ss_pred HHHHHHHhCCCCCCCCcEEEEEcCcccccCHHHHHHHHHhcccCCcEEEEEeCCC----chhHHHHHHHHHHCCCceEEe
Q 007247 387 KEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGK----KPMEKQLEQLEILYPEKARGV 462 (611)
Q Consensus 387 ~~~~~~~~gl~~~~~~~~il~iGrl~~~Kg~d~li~a~~~l~~~~~~lvivG~g~----~~~~~~l~~l~~~~~~~v~~~ 462 (611)
--.+++.+|-- +...|.|+|-+ ...=..-++.++.++ ++++.++++.. +++.+.+++.+.+.+.++...
T Consensus 164 l~Ti~E~~g~l---~gl~va~vGD~-~~rva~Sl~~~~~~l---G~~v~~~~P~~l~p~~~~~~~~~~~a~~~G~~v~~~ 236 (359)
T 2w37_A 164 FMTVKENFGKL---QGLTLTFMGDG-RNNVANSLLVTGAIL---GVNIHIVAPKALFPTEETQNIAKGFAEKSGAKLVIT 236 (359)
T ss_dssp HHHHHHHHSCC---TTCEEEEESCT-TSHHHHHHHHHHHHH---TCEEEEECCGGGSCCHHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHhCCc---CCeEEEEECCC-ccchHHHHHHHHHHc---CCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEE
Confidence 33466666632 33689999997 233356677777777 78999999843 234455566666665445433
Q ss_pred cccChHHHHHHHHHccEEEeCCC
Q 007247 463 AKFNIPLAHMIIAGADFILIPSR 485 (611)
Q Consensus 463 ~~~~~~~~~~i~~~aDv~l~pS~ 485 (611)
..+.+.+.+||++.....
T Consensus 237 -----~d~~eav~~aDvvytd~w 254 (359)
T 2w37_A 237 -----DDLDEGLKGSNVVYTDVW 254 (359)
T ss_dssp -----SCHHHHHTTCSEEEECCS
T ss_pred -----eCHHHHhcCCCEEEEccc
Confidence 223457899998877554
No 263
>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*
Probab=23.82 E-value=53 Score=31.50 Aligned_cols=32 Identities=31% Similarity=0.411 Sum_probs=23.7
Q ss_pred ceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEeec
Q 007247 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (611)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~~ 127 (611)
|||++|+. |..| ..++..|++.||+|+++...
T Consensus 1 m~i~iiG~--------G~~G---~~~a~~l~~~g~~V~~~~r~ 32 (291)
T 1ks9_A 1 MKITVLGC--------GALG---QLWLTALCKQGHEVQGWLRV 32 (291)
T ss_dssp CEEEEECC--------SHHH---HHHHHHHHHTTCEEEEECSS
T ss_pred CeEEEECc--------CHHH---HHHHHHHHhCCCCEEEEEcC
Confidence 78888873 3333 35788899999999998644
No 264
>3ph3_A Ribose-5-phosphate isomerase; alpha-beta-alpha sandwich fold; HET: RB5; 2.07A {Clostridium thermocellum} SCOP: c.121.1.1 PDB: 3ph4_A*
Probab=23.74 E-value=61 Score=29.08 Aligned_cols=43 Identities=16% Similarity=0.245 Sum_probs=26.0
Q ss_pred cccccCCCceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEeec
Q 007247 77 LMIVCGVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (611)
Q Consensus 77 ~~~~~~~~MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~~ 127 (611)
+...-.++|||++-+.. +|.+ +=..|...|.+.||+|.=+.+.
T Consensus 13 ~~~~~~~~MkIaIgsDh-------aG~~-lK~~i~~~L~~~G~eV~D~G~~ 55 (169)
T 3ph3_A 13 GLVPRGSHMKIGIGSDH-------GGYN-LKREIADFLKKRGYEVIDFGTH 55 (169)
T ss_dssp --------CEEEEEECG-------GGHH-HHHHHHHHHHHTTCEEEECCCC
T ss_pred CCcccCCCCEEEEEeCc-------hHHH-HHHHHHHHHHHCCCEEEEcCCC
Confidence 34444567999887754 5555 4455778899999999877653
No 265
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=23.66 E-value=2.7e+02 Score=21.89 Aligned_cols=107 Identities=13% Similarity=0.157 Sum_probs=61.9
Q ss_pred EEEEEeCCCchhHHHHHHHHHHCCCceEEecccChHHHHHHHH--HccEEEeCCCC-CCCcHHHHHHHH-----cCCceE
Q 007247 433 QIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMR-----YGTVPI 504 (611)
Q Consensus 433 ~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~i~~--~aDv~l~pS~~-E~~gl~~lEAma-----~G~PvI 504 (611)
+++|+.+.+ ...+.++......+-.+. ..-+....-..+. ..|++++-... +.-|+.+++.+. ..+|+|
T Consensus 4 ~ilivdd~~-~~~~~l~~~l~~~g~~v~--~~~~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii 80 (127)
T 2jba_A 4 RILVVEDEA-PIREMVCFVLEQNGFQPV--EAEDYDSAVNQLNEPWPDLILLAWMLPGGSGIQFIKHLRRESMTRDIPVV 80 (127)
T ss_dssp EEEEECSCH-HHHHHHHHHHHHTTCEEE--EECSHHHHHTTCSSSCCSEEEEESEETTEEHHHHHHHHHTSTTTTTSCEE
T ss_pred EEEEEcCCH-HHHHHHHHHHHHCCceEE--EeCCHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHhCcccCCCCEE
Confidence 566666544 344455554444432232 2223333322222 35877765443 335777787775 356766
Q ss_pred EcC-Cc---ccccceecCcceEEecccccccccCCccCHHHHHHHHHHHHHh
Q 007247 505 VAS-TG---GLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (611)
Q Consensus 505 ~s~-~g---g~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~~la~~i~~ll~~ 552 (611)
.-. .. ...+.++.|..+++. .|.+.+++...|..++..
T Consensus 81 ~~s~~~~~~~~~~~~~~ga~~~l~----------Kp~~~~~l~~~i~~~~~~ 122 (127)
T 2jba_A 81 MLTARGEEEDRVRGLETGADDCIT----------KPFSPKELVARIKAVMRR 122 (127)
T ss_dssp EEEETTHHHHHHTTCCCSCSEEEE----------ESCCHHHHHHHHHHHHHC
T ss_pred EEeCCCCHHHHHHHHhcCCCeEEe----------CCCCHHHHHHHHHHHHhc
Confidence 543 22 234455667788887 889999999999988764
No 266
>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}
Probab=23.57 E-value=98 Score=30.89 Aligned_cols=44 Identities=27% Similarity=0.342 Sum_probs=30.6
Q ss_pred HHHHHHHccEEEe--CCCCCC---CcHHHHHHHHcCCceEEcCCccccc
Q 007247 470 AHMIIAGADFILI--PSRFEP---CGLIQLHAMRYGTVPIVASTGGLVD 513 (611)
Q Consensus 470 ~~~i~~~aDv~l~--pS~~E~---~gl~~lEAma~G~PvI~s~~gg~~e 513 (611)
+.++++.||++++ |...++ ++-..++.|.-|.-+|-+..|++.+
T Consensus 192 l~ell~~aDvV~~~~p~t~~t~~li~~~~l~~mk~ga~lin~srg~~vd 240 (331)
T 1xdw_A 192 LDEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQLVD 240 (331)
T ss_dssp HHHHHHHCSEEEECCCCCTTTCCSBCHHHHHTSCTTEEEEECSCGGGBC
T ss_pred HHHHHhhCCEEEEecCCchHHHHHhCHHHHhhCCCCcEEEECCCccccc
Confidence 4568899999886 333343 3345788888888888888777554
No 267
>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A*
Probab=23.53 E-value=41 Score=33.29 Aligned_cols=24 Identities=17% Similarity=0.180 Sum_probs=17.6
Q ss_pred ccHHHHhccchHHHHhC--CCeEEEEeec
Q 007247 101 GGLGDVLGGLPPALAAN--GHRVMTIAPR 127 (611)
Q Consensus 101 GG~~~~~~~La~~L~~~--Gh~V~vit~~ 127 (611)
|++| ..+++.|.++ ||+|.++...
T Consensus 14 G~iG---~~l~~~L~~~~~g~~V~~~~r~ 39 (348)
T 1oc2_A 14 GFIG---SNFVHYVYNNHPDVHVTVLDKL 39 (348)
T ss_dssp SHHH---HHHHHHHHHHCTTCEEEEEECC
T ss_pred cHHH---HHHHHHHHHhCCCCEEEEEeCC
Confidence 5555 4577888888 8999988653
No 268
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A
Probab=23.52 E-value=1.7e+02 Score=24.07 Aligned_cols=38 Identities=18% Similarity=0.264 Sum_probs=21.4
Q ss_pred cEEEEEcCcccccCHHHHHHHHHhccc-------CCcEEEEEeCCC
Q 007247 403 PVIGFIGRLEEQKGSDILAAAIPHFIK-------ENVQIIVLGTGK 441 (611)
Q Consensus 403 ~~il~iGrl~~~Kg~d~li~a~~~l~~-------~~~~lvivG~g~ 441 (611)
..|++.|.+... .-+.+.+.+..+-- .+..++|+|...
T Consensus 36 ~~~v~TG~l~~~-~R~e~~~~i~~~Gg~v~~sVSkkTd~LV~G~~~ 80 (109)
T 2k6g_A 36 LIFVITGVLESI-ERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDS 80 (109)
T ss_dssp CEEEEESBCSSC-CHHHHHHHHHHTTCEEESSCCTTCCEEEECBCC
T ss_pred CEEEEeeeCCCC-CHHHHHHHHHHcCCEeeCcccCCceEEEECCCC
Confidence 478888887532 22444444444421 366677777643
No 269
>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}
Probab=23.32 E-value=41 Score=34.10 Aligned_cols=34 Identities=26% Similarity=0.369 Sum_probs=25.5
Q ss_pred CCceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEeec
Q 007247 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (611)
Q Consensus 83 ~~MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~~ 127 (611)
+.|||++|.. |..| ..++..|++.||+|+++...
T Consensus 28 ~~mkI~VIGa--------G~mG---~alA~~La~~G~~V~l~~r~ 61 (356)
T 3k96_A 28 FKHPIAILGA--------GSWG---TALALVLARKGQKVRLWSYE 61 (356)
T ss_dssp CCSCEEEECC--------SHHH---HHHHHHHHTTTCCEEEECSC
T ss_pred cCCeEEEECc--------cHHH---HHHHHHHHHCCCeEEEEeCC
Confidence 4689999984 3333 33788899999999988754
No 270
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=23.32 E-value=1.4e+02 Score=27.95 Aligned_cols=103 Identities=10% Similarity=0.055 Sum_probs=58.0
Q ss_pred EEEEcC-cccccCHHHHHHHHHhcccCCcEEEEEeCCC--c---hhHHHHHHHHHHCCCceEEecccChHHHHHHHHHcc
Q 007247 405 IGFIGR-LEEQKGSDILAAAIPHFIKENVQIIVLGTGK--K---PMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGAD 478 (611)
Q Consensus 405 il~iGr-l~~~Kg~d~li~a~~~l~~~~~~lvivG~g~--~---~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~i~~~aD 478 (611)
++..+. +....=++.+.++++++...+.+++|+..+. . .+...+.+.-.+.+-++...-.++. ..+.+..||
T Consensus 4 lL~S~~~~~~~~~l~~~~~~l~~~~~~~~~i~iI~~a~~~~~~~~~~~~~~~al~~lG~~~~~v~~~~d--~~~~l~~ad 81 (229)
T 1fy2_A 4 LLLSNSTLPGKAWLEHALPLIANQLNGRRSAVFIPFAGVTQTWDEYTDKTAEVLAPLGVNVTGIHRVAD--PLAAIEKAE 81 (229)
T ss_dssp EEESCSCCTTSCTTTTTHHHHHHHHTTCCEEEEECTTCCSSCHHHHHHHHHHHHGGGTCEEEETTSSSC--HHHHHHHCS
T ss_pred EEEcCCCCCCCcHHHHHHHHHHHHhcCCCeEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEecccc--HHHHHhcCC
Confidence 344433 4333234445666666655667888888763 1 2333333333444433332211222 225788999
Q ss_pred EEEeCCCCCC-----------CcHHHHHHHHcCCceEEcCCcc
Q 007247 479 FILIPSRFEP-----------CGLIQLHAMRYGTVPIVASTGG 510 (611)
Q Consensus 479 v~l~pS~~E~-----------~gl~~lEAma~G~PvI~s~~gg 510 (611)
.+++|- -+. +--.+-|+...|+|++.+..|-
T Consensus 82 ~I~lpG-G~~~~~~~~l~~~gl~~~l~~~~~~G~p~~G~sAG~ 123 (229)
T 1fy2_A 82 IIIVGG-GNTFQLLKESRERGLLAPMADRVKRGALYIGWSAGA 123 (229)
T ss_dssp EEEECC-SCHHHHHHHHHHTTCHHHHHHHHHTTCEEEEETHHH
T ss_pred EEEECC-CcHHHHHHHHHHCChHHHHHHHHHcCCEEEEECHHH
Confidence 999997 222 2235777878999999988664
No 271
>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0
Probab=23.19 E-value=47 Score=31.48 Aligned_cols=35 Identities=23% Similarity=0.227 Sum_probs=25.6
Q ss_pred CceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEeec
Q 007247 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (611)
Q Consensus 84 ~MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~~ 127 (611)
.||.++|+.- .||+| ..+++.|+++|++|.++..+
T Consensus 6 ~~k~vlVTGa------s~gIG---~~~a~~l~~~G~~v~~~~~~ 40 (264)
T 3i4f_A 6 FVRHALITAG------TKGLG---KQVTEKLLAKGYSVTVTYHS 40 (264)
T ss_dssp CCCEEEETTT------TSHHH---HHHHHHHHHTTCEEEEEESS
T ss_pred ccCEEEEeCC------CchhH---HHHHHHHHHCCCEEEEEcCC
Confidence 4677777732 35555 46889999999999988654
No 272
>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*
Probab=23.16 E-value=2.1e+02 Score=28.65 Aligned_cols=44 Identities=25% Similarity=0.272 Sum_probs=32.3
Q ss_pred HHHHHHHccEEEeC--CCCCC---CcHHHHHHHHcCCceEEcCCccccc
Q 007247 470 AHMIIAGADFILIP--SRFEP---CGLIQLHAMRYGTVPIVASTGGLVD 513 (611)
Q Consensus 470 ~~~i~~~aDv~l~p--S~~E~---~gl~~lEAma~G~PvI~s~~gg~~e 513 (611)
+.++++.||++++. ...|+ ++-..+..|--|.-+|-+..|++.+
T Consensus 194 l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vd 242 (343)
T 2yq5_A 194 FDTVLKEADIVSLHTPLFPSTENMIGEKQLKEMKKSAYLINCARGELVD 242 (343)
T ss_dssp HHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECSCGGGBC
T ss_pred HHHHHhcCCEEEEcCCCCHHHHHHhhHHHHhhCCCCcEEEECCCChhhh
Confidence 45789999998763 33344 4456788888899999888887655
No 273
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*
Probab=23.14 E-value=2.6e+02 Score=25.86 Aligned_cols=59 Identities=14% Similarity=0.104 Sum_probs=33.6
Q ss_pred HHHHHHHH-HccEEEeCCCC-----CCCcHHHHHHHHc--CCceEEcCC-c---ccccceec---CcceEEecc
Q 007247 468 PLAHMIIA-GADFILIPSRF-----EPCGLIQLHAMRY--GTVPIVAST-G---GLVDTVEE---GFTGFQMGS 526 (611)
Q Consensus 468 ~~~~~i~~-~aDv~l~pS~~-----E~~gl~~lEAma~--G~PvI~s~~-g---g~~e~v~~---g~~G~l~~~ 526 (611)
+.+..+.. ++|.+++.++. .++.+..++.+.- ++|+|++.. . .+.++.+. |..|+++|+
T Consensus 153 e~~~~~~~~G~~~i~~~~~~~~~~~~g~~~~~~~~l~~~~~ipvia~GGI~~~~d~~~~~~~~~~Gad~v~vG~ 226 (244)
T 2y88_A 153 DVLERLDSEGCSRFVVTDITKDGTLGGPNLDLLAGVADRTDAPVIASGGVSSLDDLRAIATLTHRGVEGAIVGK 226 (244)
T ss_dssp HHHHHHHHTTCCCEEEEETTTTTTTSCCCHHHHHHHHTTCSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEECH
T ss_pred HHHHHHHhCCCCEEEEEecCCccccCCCCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHhhccCCCCEEEEcH
Confidence 33333443 37877665532 3456666666654 788988632 1 12234444 778888874
No 274
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=23.08 E-value=4.2e+02 Score=23.96 Aligned_cols=108 Identities=16% Similarity=0.149 Sum_probs=63.3
Q ss_pred cEEEEEeCCCchhHHHHHHHHHHCCCceEEecccChHHHHHHHH--HccEEEeCCCC-CCCcHHHHHHHHc--CCceEEc
Q 007247 432 VQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMRY--GTVPIVA 506 (611)
Q Consensus 432 ~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~i~~--~aDv~l~pS~~-E~~gl~~lEAma~--G~PvI~s 506 (611)
.+++|+.+.+ ...+.+..+....+-.+.. .-+.......+. ..|++++-... +.-|+.+++.+.. .+|+|.-
T Consensus 6 ~~ILivdd~~-~~~~~l~~~L~~~g~~v~~--~~~~~~al~~l~~~~~dlvilD~~l~~~~g~~~~~~lr~~~~~~ii~l 82 (238)
T 2gwr_A 6 QRILVVDDDA-SLAEMLTIVLRGEGFDTAV--IGDGTQALTAVRELRPDLVLLDLMLPGMNGIDVCRVLRADSGVPIVML 82 (238)
T ss_dssp CEEEEECSCH-HHHHHHHHHHHHTTCEEEE--ECCGGGHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHHTTCCCCEEEE
T ss_pred CeEEEEeCCH-HHHHHHHHHHHHCCCEEEE--ECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCCCCcEEEE
Confidence 4667776544 3444555544443322322 223333323333 46888775543 4457777777753 6787764
Q ss_pred C-Ccc---cccceecCcceEEecccccccccCCccCHHHHHHHHHHHHHh
Q 007247 507 S-TGG---LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (611)
Q Consensus 507 ~-~gg---~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~~la~~i~~ll~~ 552 (611)
. ... ..+.+..|..|++. .|.+.+++..+|..++..
T Consensus 83 t~~~~~~~~~~~~~~Ga~~~l~----------Kp~~~~~L~~~i~~~~~~ 122 (238)
T 2gwr_A 83 TAKTDTVDVVLGLESGADDYIM----------KPFKPKELVARVRARLRR 122 (238)
T ss_dssp EETTCCSCHHHHHHTTCCEEEE----------ESCCHHHHHHHHHHHCCC
T ss_pred eCCCCHHHHHHHHHCCCCEEEe----------CCCCHHHHHHHHHHHHhh
Confidence 3 222 23344567889987 899999999999988753
No 275
>3p0r_A Azoreductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.80A {Bacillus anthracis}
Probab=23.08 E-value=63 Score=29.85 Aligned_cols=42 Identities=10% Similarity=0.095 Sum_probs=28.0
Q ss_pred CceEEEEeeeecCcccccc-HHHHhccchHHHHhC--CCeEEEEeec
Q 007247 84 GLNILFVGTEVAPWSKTGG-LGDVLGGLPPALAAN--GHRVMTIAPR 127 (611)
Q Consensus 84 ~MkIl~v~~~~~P~~~~GG-~~~~~~~La~~L~~~--Gh~V~vit~~ 127 (611)
.|||++|... |....++ ...++..+...+.+. |++|.++-..
T Consensus 4 M~kiLiI~gS--pr~~~~S~s~~l~~~~~~~~~~~~~g~ev~~~dL~ 48 (211)
T 3p0r_A 4 MTKVLFVKAN--NRPAEQAVSVKLYEAFLASYKEAHPNDTVVELDLY 48 (211)
T ss_dssp CCEEEEEECC--CSCTTTCHHHHHHHHHHHHHHHHCTTSEEEEEEGG
T ss_pred cCEEEEEEeC--CCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEEECC
Confidence 4799999975 4211344 444555667777776 8999988644
No 276
>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2
Probab=23.02 E-value=51 Score=33.07 Aligned_cols=25 Identities=36% Similarity=0.347 Sum_probs=19.1
Q ss_pred cccHHHHhccchHHHHhCCCeEEEEeec
Q 007247 100 TGGLGDVLGGLPPALAANGHRVMTIAPR 127 (611)
Q Consensus 100 ~GG~~~~~~~La~~L~~~Gh~V~vit~~ 127 (611)
+|++| ..+++.|.++||+|.++...
T Consensus 33 tG~iG---~~l~~~L~~~g~~V~~~~r~ 57 (375)
T 1t2a_A 33 TGQDG---SYLAEFLLEKGYEVHGIVRR 57 (375)
T ss_dssp TSHHH---HHHHHHHHHTTCEEEEEECC
T ss_pred CchHH---HHHHHHHHHCCCEEEEEECC
Confidence 35555 45788899999999998754
No 277
>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A*
Probab=23.01 E-value=3e+02 Score=27.42 Aligned_cols=87 Identities=13% Similarity=0.100 Sum_probs=55.4
Q ss_pred HHHHHH-hCCCCCCCCcEEEEEcCcccccCHHHHHHHHHhcccCCcEEEEEeCCC----chhHHHHHHHHHHCCCceEEe
Q 007247 388 EALQAE-VGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGK----KPMEKQLEQLEILYPEKARGV 462 (611)
Q Consensus 388 ~~~~~~-~gl~~~~~~~~il~iGrl~~~Kg~d~li~a~~~l~~~~~~lvivG~g~----~~~~~~l~~l~~~~~~~v~~~ 462 (611)
-.+++. .|-.. +...|.|+|-. ...=..-++.++.++ ++++.++++.. +++.+.+++.+.+.+.++...
T Consensus 142 ~Ti~e~~~g~~l--~gl~ia~vGD~-~~~va~Sl~~~~~~~---G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~ 215 (333)
T 1duv_G 142 LTMQEHLPGKAF--NEMTLVYAGDA-RNNMGNSMLEAAALT---GLDLRLVAPQACWPEAALVTECRALAQQNGGNITLT 215 (333)
T ss_dssp HHHHHHSTTCCG--GGCEEEEESCT-TSHHHHHHHHHHHHH---CCEEEEECCGGGCCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHhcCCCC--CCcEEEEECCC-ccchHHHHHHHHHHc---CCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEE
Confidence 345666 56111 33689999997 233356677777777 78999999843 234455666666766444433
Q ss_pred cccChHHHHHHHHHccEEEeCCC
Q 007247 463 AKFNIPLAHMIIAGADFILIPSR 485 (611)
Q Consensus 463 ~~~~~~~~~~i~~~aDv~l~pS~ 485 (611)
..+.+.+.+||++.....
T Consensus 216 -----~d~~eav~~aDvvytd~w 233 (333)
T 1duv_G 216 -----EDVAKGVEGADFIYTDVW 233 (333)
T ss_dssp -----SCHHHHHTTCSEEEECCS
T ss_pred -----ECHHHHhCCCCEEEeCCc
Confidence 123457899998877554
No 278
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=22.94 E-value=2.7e+02 Score=21.61 Aligned_cols=107 Identities=11% Similarity=0.188 Sum_probs=59.5
Q ss_pred EEEEEeCCCchhHHHHHHHHHHCCCceEEecccChHHHHHHH--HHccEEEeCCCC-CCCcHHHHHHHH--cCCceEEc-
Q 007247 433 QIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMII--AGADFILIPSRF-EPCGLIQLHAMR--YGTVPIVA- 506 (611)
Q Consensus 433 ~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~i~--~~aDv~l~pS~~-E~~gl~~lEAma--~G~PvI~s- 506 (611)
+++|+.+.+ ...+.+.......+..+. ...+....-..+ ...|++++-... +.-|+.+++.+. ..+|+|.-
T Consensus 3 ~ilivdd~~-~~~~~l~~~l~~~~~~v~--~~~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ii~~s 79 (121)
T 1zh2_A 3 NVLIVEDEQ-AIRRFLRTALEGDGMRVF--EAETLQRGLLEAATRKPDLIILDLGLPDGDGIEFIRDLRQWSAVPVIVLS 79 (121)
T ss_dssp EEEEECSCH-HHHHHHHHHHHTTTCEEE--EESSHHHHHHHHHHHCCSEEEEESEETTEEHHHHHHHHHTTCCCCEEEEE
T ss_pred EEEEEeCCH-HHHHHHHHHHhcCCCEEE--EeCCHHHHHHHHhcCCCCEEEEeCCCCCCcHHHHHHHHHhCCCCcEEEEE
Confidence 456666543 344455554444332222 222332222222 246887764433 335677777775 34666553
Q ss_pred CCcc---cccceecCcceEEecccccccccCCccCHHHHHHHHHHHHHh
Q 007247 507 STGG---LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (611)
Q Consensus 507 ~~gg---~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~~la~~i~~ll~~ 552 (611)
.... ..+.++.|..+++. .|.+.+++...|..++..
T Consensus 80 ~~~~~~~~~~~~~~g~~~~l~----------Kp~~~~~l~~~i~~~~~~ 118 (121)
T 1zh2_A 80 ARSEESDKIAALDAGADDYLS----------KPFGIGELQARLRVALRR 118 (121)
T ss_dssp SCCSHHHHHHHHHHTCSEEEE----------SSCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhcCCCeEEe----------CCcCHHHHHHHHHHHHHh
Confidence 3322 23344567788887 899999999999888763
No 279
>1bvy_F Protein (cytochrome P450 BM-3); fatty acid monooxygenase, hemoprotein, flavoprotein, electron transfer, oxidoreductase; HET: HEM FMN; 2.03A {Bacillus megaterium} SCOP: c.23.5.1
Probab=22.92 E-value=58 Score=29.74 Aligned_cols=39 Identities=13% Similarity=0.077 Sum_probs=31.1
Q ss_pred CceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEeec
Q 007247 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (611)
Q Consensus 84 ~MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~~ 127 (611)
.|||+++-. +.+|..+.+...|+..|.+.|++|.++...
T Consensus 21 ~~kv~IvY~-----S~tGnTe~~A~~ia~~l~~~g~~v~v~~l~ 59 (191)
T 1bvy_F 21 NTPLLVLYG-----SNMGTAEGTARDLADIAMSKGFAPQVATLD 59 (191)
T ss_dssp CCCEEEEEE-----CSSSHHHHHHHHHHHHHHTTTCCCEEEEGG
T ss_pred CCeEEEEEE-----CCChHHHHHHHHHHHHHHhCCCceEEeeHH
Confidence 467776643 237999999999999999999999987654
No 280
>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A
Probab=22.88 E-value=1.1e+02 Score=30.31 Aligned_cols=46 Identities=9% Similarity=0.050 Sum_probs=31.7
Q ss_pred HHHHHHHHHccEEEeC--CCCCCC---cHHHHHHHHcCCceEEcCCccccc
Q 007247 468 PLAHMIIAGADFILIP--SRFEPC---GLIQLHAMRYGTVPIVASTGGLVD 513 (611)
Q Consensus 468 ~~~~~i~~~aDv~l~p--S~~E~~---gl~~lEAma~G~PvI~s~~gg~~e 513 (611)
..+.++++.||++++. ...|+. +-..+..|--|.-+|-+..|++.+
T Consensus 185 ~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd 235 (315)
T 3pp8_A 185 EELRAFLNQTRVLINLLPNTAQTVGIINSELLDQLPDGAYVLNLARGVHVQ 235 (315)
T ss_dssp HHHHHHHHTCSEEEECCCCCGGGTTCBSHHHHTTSCTTEEEEECSCGGGBC
T ss_pred CCHHHHHhhCCEEEEecCCchhhhhhccHHHHhhCCCCCEEEECCCChhhh
Confidence 4567899999998764 333443 445677777787788888777554
No 281
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=22.83 E-value=4e+02 Score=23.63 Aligned_cols=108 Identities=13% Similarity=0.151 Sum_probs=64.9
Q ss_pred cEEEEEeCCCchhHHHHHHHHHHCCCceEEecccChHHHHHHHH--HccEEEeCCCC-CCCcHHHHHHHH---cCCceEE
Q 007247 432 VQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMR---YGTVPIV 505 (611)
Q Consensus 432 ~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~i~~--~aDv~l~pS~~-E~~gl~~lEAma---~G~PvI~ 505 (611)
.+++|+.+.+ ...+.+..+....+-.+. ...+.......+. ..|++++-... +.-|+.+++.+. ..+|+|.
T Consensus 3 ~~ilivdd~~-~~~~~l~~~L~~~g~~v~--~~~~~~~a~~~~~~~~~dlvllD~~l~~~~g~~~~~~lr~~~~~~~ii~ 79 (225)
T 1kgs_A 3 VRVLVVEDER-DLADLITEALKKEMFTVD--VCYDGEEGMYMALNEPFDVVILDIMLPVHDGWEILKSMRESGVNTPVLM 79 (225)
T ss_dssp CEEEEECSSH-HHHHHHHHHHHHTTCEEE--EESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHTTCCCCEEE
T ss_pred ceEEEEeCCH-HHHHHHHHHHHHCCCEEE--EECCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 4566766543 344555555444432232 2234444333443 35888775543 445777777775 3677766
Q ss_pred cCC-c---ccccceecCcceEEecccccccccCCccCHHHHHHHHHHHHHh
Q 007247 506 AST-G---GLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (611)
Q Consensus 506 s~~-g---g~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~~la~~i~~ll~~ 552 (611)
-.. . ...+.+..|..+++. .|.+.+++..+|..++..
T Consensus 80 ls~~~~~~~~~~~~~~ga~~~l~----------Kp~~~~~l~~~i~~~~~~ 120 (225)
T 1kgs_A 80 LTALSDVEYRVKGLNMGADDYLP----------KPFDLRELIARVRALIRR 120 (225)
T ss_dssp EESSCHHHHHHHTCCCCCSEEEE----------SSCCHHHHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHhCCccEEEe----------CCCCHHHHHHHHHHHHhh
Confidence 432 2 233455667889987 899999999999998864
No 282
>2vo1_A CTP synthase 1; pyrimidine biosynthesis, glutamine amidotransferase, phosphorylation, amidotransferase, cytidine 5-prime triphos synthetase, UTP; 2.8A {Homo sapiens} SCOP: c.37.1.10 PDB: 3ihl_A*
Probab=22.78 E-value=84 Score=30.52 Aligned_cols=43 Identities=19% Similarity=0.162 Sum_probs=34.1
Q ss_pred CCCceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEeec
Q 007247 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (611)
Q Consensus 82 ~~~MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~~ 127 (611)
|+.||-.||+.-. .+.=|-|....+|..-|..+|++|+++-..
T Consensus 20 ~~~~KyIfVTGGV---vS~lGKGi~aaSlg~lLk~~G~~Vt~~K~D 62 (295)
T 2vo1_A 20 FQSMKYILVTGGV---ISGIGKGIIASSVGTILKSCGLHVTSIKID 62 (295)
T ss_dssp -CCCEEEEEEECS---SSSSSHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred cccceEEEEcCCc---ccccccHHHHHHHHHHHHHCCCcceeeecc
Confidence 5689999999754 234577778888999999999999999643
No 283
>3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase, MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans} PDB: 4f8y_A*
Probab=22.78 E-value=53 Score=29.96 Aligned_cols=38 Identities=26% Similarity=0.341 Sum_probs=25.2
Q ss_pred ceEEEEeeeecCcccccc-HHHHhccchHHHHhCCCeEEEEeec
Q 007247 85 LNILFVGTEVAPWSKTGG-LGDVLGGLPPALAANGHRVMTIAPR 127 (611)
Q Consensus 85 MkIl~v~~~~~P~~~~GG-~~~~~~~La~~L~~~Gh~V~vit~~ 127 (611)
|||++|... |. .++ ...++..+...+ +.|++|.++-..
T Consensus 1 MkiLiI~gs--pr--~~s~t~~l~~~~~~~~-~~g~~v~~~dL~ 39 (196)
T 3lcm_A 1 MKILIVYTH--PN--PTSFNAEILKQVQTNL-SKEHTVSTLDLY 39 (196)
T ss_dssp CEEEEEECC--SC--TTSHHHHHHHHHHHHS-CTTSEEEEEETT
T ss_pred CEEEEEEeC--CC--CCChHHHHHHHHHHHh-cCCCeEEEEEcc
Confidence 899999975 53 344 333444455555 679999998654
No 284
>4ekn_B Aspartate carbamoyltransferase; atcase, aspartate transcarbamoylase, pyrimidine biosynthesis thermostability, substrate channeling; 2.50A {Methanocaldococcus jannaschii} PDB: 3e2p_A 2rgw_A
Probab=22.77 E-value=2e+02 Score=28.33 Aligned_cols=112 Identities=19% Similarity=0.150 Sum_probs=63.4
Q ss_pred eeCCcccCCcCCCCccccccccCcchhhhccHHHHHHHHHHhCCCCCCCCcEEEEEcCcccccCHHHHHHHHHhcccCCc
Q 007247 353 IVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENV 432 (611)
Q Consensus 353 I~Ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~il~iGrl~~~Kg~d~li~a~~~l~~~~~ 432 (611)
|.|+.|-..+.|... -.+--.+++.+|-- +...|.|+|-+....=..-++.++.++ +++
T Consensus 121 VINag~g~~~HPtQ~----------------LaDl~Ti~e~~g~l---~glkva~vGD~~~~rva~Sl~~~~~~~--~G~ 179 (306)
T 4ekn_B 121 IINAGDGSNQHPTQT----------------LLDLYTIMREIGRI---DGIKIAFVGDLKYGRTVHSLVYALSLF--ENV 179 (306)
T ss_dssp EEESCSSSSCCHHHH----------------HHHHHHHHHHHSCS---TTCEEEEESCTTTCHHHHHHHHHHHTS--SSC
T ss_pred EEeCCCCCCcCcHHH----------------HHHHHHHHHHhCCc---CCCEEEEEcCCCCCcHHHHHHHHHHhc--CCC
Confidence 458877666666421 12233566777632 346899999775433356677777776 478
Q ss_pred EEEEEeCCCchhHHHHHHHHHHCCCceEEecccChHHHHHHHHHccEEEeCCCC-CCCc
Q 007247 433 QIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRF-EPCG 490 (611)
Q Consensus 433 ~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~i~~~aDv~l~pS~~-E~~g 490 (611)
++.++++..-...+.+.+...+.+.++...- + +.+.+++||++...... |.++
T Consensus 180 ~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~--d---~~eav~~aDvvy~~~~q~er~~ 233 (306)
T 4ekn_B 180 EMYFVSPKELRLPKDIIEDLKAKNIKFYEKE--S---LDDLDDDIDVLYVTRIQKERFP 233 (306)
T ss_dssp EEEEECCGGGCCCHHHHHHHHHTTCCEEEES--C---GGGCCTTCSEEEECCCCGGGCC
T ss_pred EEEEECCcccccCHHHHHHHHHcCCEEEEEc--C---HHHHhcCCCEEEeCCcccccCC
Confidence 8999997431122333333334444443321 2 22468899988765432 4554
No 285
>3dff_A Teicoplanin pseudoaglycone deacetylases ORF2; lipoglycopeptide, zinc dependen hydrolase; HET: MSE PG4; 1.60A {Actinoplanes teichomyceticus} PDB: 2x9l_A* 3dfk_A* 3dfm_A 2xad_A*
Probab=22.76 E-value=72 Score=30.93 Aligned_cols=40 Identities=13% Similarity=0.052 Sum_probs=27.2
Q ss_pred CceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEeecCC
Q 007247 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYD 129 (611)
Q Consensus 84 ~MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~~~~ 129 (611)
+++||+|+++ |.+..= .++.+...++++|++|.+++...+
T Consensus 7 ~~rvLvv~aH--PDDe~l----g~GGtia~~~~~G~~V~vv~~T~G 46 (273)
T 3dff_A 7 ATRLLAISPH--LDDAVL----SFGAGLAQAAQDGANVLVYTVFAG 46 (273)
T ss_dssp -CEEEEEESS--TTHHHH----HHHHHHHHHHHTTCEEEEEETTCC
T ss_pred CCCEEEEEeC--CChHHH----hHHHHHHHHHHCCCcEEEEEEeCC
Confidence 6899999985 764322 233455567788999999986533
No 286
>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A*
Probab=22.71 E-value=72 Score=30.40 Aligned_cols=45 Identities=11% Similarity=-0.073 Sum_probs=26.7
Q ss_pred CCceEEEEeeeecCc----cccccHH-HHhccchHHHHhCCCeEEEEeec
Q 007247 83 VGLNILFVGTEVAPW----SKTGGLG-DVLGGLPPALAANGHRVMTIAPR 127 (611)
Q Consensus 83 ~~MkIl~v~~~~~P~----~~~GG~~-~~~~~La~~L~~~Gh~V~vit~~ 127 (611)
.++||++|.+.+.-+ ...-|.. .=+..-...|.+.|++|+++++.
T Consensus 2 ~m~kvlivlt~~~~~~~~~g~~tG~~~~E~~~p~~~l~~aG~~V~iaS~~ 51 (244)
T 3kkl_A 2 TPKRALISLTSYHGPFYKDGAKTGVFVVEILRSFDTFEKHGFEVDFVSET 51 (244)
T ss_dssp -CCEEEEECCCCCCCCSTTSCCCCBCHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCCEEEEEECCCCcccCCCCCcCcccHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 346899998764211 0111322 12233345688999999999987
No 287
>1fmt_A Methionyl-tRNA FMet formyltransferase; initiator tRNA, translation initiation; 2.00A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 2fmt_A* 3r8x_A
Probab=22.38 E-value=78 Score=31.47 Aligned_cols=35 Identities=31% Similarity=0.463 Sum_probs=23.4
Q ss_pred CCCceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEeec
Q 007247 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (611)
Q Consensus 82 ~~~MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~~ 127 (611)
+++|||+|+++ |. +.....++|.+.||+|..|..+
T Consensus 1 s~~mrIvf~Gt---~~--------fa~~~L~~L~~~~~~i~~Vvt~ 35 (314)
T 1fmt_A 1 SESLRIIFAGT---PD--------FAARHLDALLSSGHNVVGVFTQ 35 (314)
T ss_dssp CCCCEEEEEEC---SH--------HHHHHHHHHHHTTCEEEEEECC
T ss_pred CCCCEEEEEec---CH--------HHHHHHHHHHHCCCcEEEEEeC
Confidence 35799999986 32 2223346677789999866655
No 288
>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}
Probab=22.33 E-value=54 Score=29.48 Aligned_cols=33 Identities=27% Similarity=0.547 Sum_probs=22.8
Q ss_pred CceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEeec
Q 007247 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (611)
Q Consensus 84 ~MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~~ 127 (611)
+|||++.+. .||+| ..+++.|+ +|++|.++...
T Consensus 3 kM~vlVtGa-------sg~iG---~~~~~~l~-~g~~V~~~~r~ 35 (202)
T 3d7l_A 3 AMKILLIGA-------SGTLG---SAVKERLE-KKAEVITAGRH 35 (202)
T ss_dssp SCEEEEETT-------TSHHH---HHHHHHHT-TTSEEEEEESS
T ss_pred CcEEEEEcC-------CcHHH---HHHHHHHH-CCCeEEEEecC
Confidence 578665543 36666 44778888 89999988644
No 289
>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}
Probab=22.33 E-value=53 Score=31.10 Aligned_cols=36 Identities=33% Similarity=0.424 Sum_probs=25.0
Q ss_pred cCCCceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEeec
Q 007247 81 CGVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (611)
Q Consensus 81 ~~~~MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~~ 127 (611)
....|||.||.. |..| ..|+..|++.||+|+++...
T Consensus 16 ~~~~~kIgiIG~--------G~mG---~alA~~L~~~G~~V~~~~r~ 51 (245)
T 3dtt_A 16 YFQGMKIAVLGT--------GTVG---RTMAGALADLGHEVTIGTRD 51 (245)
T ss_dssp ---CCEEEEECC--------SHHH---HHHHHHHHHTTCEEEEEESC
T ss_pred ccCCCeEEEECC--------CHHH---HHHHHHHHHCCCEEEEEeCC
Confidence 345789999973 3333 44788899999999988644
No 290
>2bw0_A 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase; nucleotide biosynthesis, oxidoreductase; 1.7A {Homo sapiens} SCOP: b.46.1.1 c.65.1.1 PDB: 2cfi_A* 1s3i_A
Probab=22.30 E-value=75 Score=31.84 Aligned_cols=35 Identities=17% Similarity=0.142 Sum_probs=23.6
Q ss_pred CCCceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEeec
Q 007247 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (611)
Q Consensus 82 ~~~MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~~ 127 (611)
|++|||+|++. | .+...+.++|.+.||+|..|...
T Consensus 20 ~~~mrIvf~G~---~--------~fa~~~L~~L~~~~~~i~~Vvt~ 54 (329)
T 2bw0_A 20 FQSMKIAVIGQ---S--------LFGQEVYCHLRKEGHEVVGVFTV 54 (329)
T ss_dssp -CCCEEEEECC---H--------HHHHHHHHHHHHTTCEEEEEEEC
T ss_pred CCCCEEEEEcC---c--------HHHHHHHHHHHHCCCeEEEEEeC
Confidence 45699999952 2 23334567788889998876654
No 291
>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0
Probab=22.24 E-value=59 Score=30.40 Aligned_cols=34 Identities=32% Similarity=0.510 Sum_probs=24.2
Q ss_pred ceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEeec
Q 007247 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (611)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~~ 127 (611)
||+++|+.- .||+| ..+++.|+++|++|.++..+
T Consensus 3 ~k~vlVTGa------s~GIG---~a~a~~l~~~G~~V~~~~r~ 36 (235)
T 3l6e_A 3 LGHIIVTGA------GSGLG---RALTIGLVERGHQVSMMGRR 36 (235)
T ss_dssp CCEEEEEST------TSHHH---HHHHHHHHHTTCEEEEEESC
T ss_pred CCEEEEECC------CCHHH---HHHHHHHHHCCCEEEEEECC
Confidence 466666632 46666 45788999999999888654
No 292
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=22.20 E-value=1.1e+02 Score=28.44 Aligned_cols=37 Identities=16% Similarity=0.174 Sum_probs=23.3
Q ss_pred CCCceEEEEeeeecCccccccHHHHhccchHHHHhCC--CeEEEEeec
Q 007247 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANG--HRVMTIAPR 127 (611)
Q Consensus 82 ~~~MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~G--h~V~vit~~ 127 (611)
|.++||+++.+ |.|..+..|..++.+.+ ++|..+..+
T Consensus 5 m~~~ri~vl~S---------G~gsnl~all~~~~~~~l~~~I~~Visn 43 (209)
T 4ds3_A 5 MKRNRVVIFIS---------GGGSNMEALIRAAQAPGFPAEIVAVFSD 43 (209)
T ss_dssp -CCEEEEEEES---------SCCHHHHHHHHHHTSTTCSEEEEEEEES
T ss_pred CCCccEEEEEE---------CCcHHHHHHHHHHHcCCCCcEEEEEEEC
Confidence 55788988764 23445667777776543 577766654
No 293
>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2
Probab=22.17 E-value=36 Score=32.98 Aligned_cols=34 Identities=26% Similarity=0.413 Sum_probs=24.1
Q ss_pred CceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEeec
Q 007247 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (611)
Q Consensus 84 ~MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~~ 127 (611)
+|+|++++. +|++|. .++++|.++||+|.+++..
T Consensus 4 ~~~ilVtGa-------tG~iG~---~l~~~L~~~g~~V~~l~R~ 37 (308)
T 1qyc_A 4 RSRILLIGA-------TGYIGR---HVAKASLDLGHPTFLLVRE 37 (308)
T ss_dssp CCCEEEEST-------TSTTHH---HHHHHHHHTTCCEEEECCC
T ss_pred CCEEEEEcC-------CcHHHH---HHHHHHHhCCCCEEEEECC
Confidence 466766653 355554 4678899999999988754
No 294
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=22.12 E-value=71 Score=29.95 Aligned_cols=39 Identities=18% Similarity=0.212 Sum_probs=28.3
Q ss_pred ceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEeec
Q 007247 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (611)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~~ 127 (611)
|||+.|++.- ..-|-.....+||.+|+++|++|.++=..
T Consensus 2 ~~vi~v~s~k----gGvGKTt~a~~LA~~la~~g~~VlliD~D 40 (260)
T 3q9l_A 2 ARIIVVTSGK----GGVGKTTSSAAIATGLAQKGKKTVVIDFA 40 (260)
T ss_dssp CEEEEEECSS----TTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CeEEEEECCC----CCCcHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 4666666431 12256678889999999999999999655
No 295
>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A*
Probab=22.06 E-value=30 Score=32.91 Aligned_cols=34 Identities=21% Similarity=0.145 Sum_probs=23.7
Q ss_pred ceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEeec
Q 007247 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (611)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~~ 127 (611)
||+++|+.- .||+|. .+++.|+++|++|.++..+
T Consensus 1 Mk~vlVTGa------s~gIG~---~ia~~l~~~G~~V~~~~r~ 34 (254)
T 1zmt_A 1 MSTAIVTNV------KHFGGM---GSALRLSEAGHTVACHDES 34 (254)
T ss_dssp -CEEEESST------TSTTHH---HHHHHHHHTTCEEEECCGG
T ss_pred CeEEEEeCC------CchHHH---HHHHHHHHCCCEEEEEeCC
Confidence 677777632 456663 5788899999999887543
No 296
>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*
Probab=22.04 E-value=51 Score=31.12 Aligned_cols=35 Identities=20% Similarity=0.287 Sum_probs=24.0
Q ss_pred CceEEEEeeeecCccccccHHHHhccchHHHHh-CCCeEEEEeec
Q 007247 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAA-NGHRVMTIAPR 127 (611)
Q Consensus 84 ~MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~-~Gh~V~vit~~ 127 (611)
.+|.++|+.- .||+| ..+++.|++ .|++|.++...
T Consensus 3 ~~k~vlITGa------sggIG---~~~a~~L~~~~g~~V~~~~r~ 38 (276)
T 1wma_A 3 GIHVALVTGG------NKGIG---LAIVRDLCRLFSGDVVLTARD 38 (276)
T ss_dssp CCCEEEESSC------SSHHH---HHHHHHHHHHSSSEEEEEESS
T ss_pred CCCEEEEeCC------CcHHH---HHHHHHHHHhcCCeEEEEeCC
Confidence 3555666531 46666 457888999 99999888644
No 297
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=21.99 E-value=3.5e+02 Score=25.36 Aligned_cols=85 Identities=14% Similarity=0.061 Sum_probs=44.2
Q ss_pred HHHHHHHHhcccCCcEEEEEeCCCchhHHHHHHHHHHCCCceEEeccc-ChHHHH-HHHHHccEEEeCCCCCCCcHHHHH
Q 007247 418 DILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKF-NIPLAH-MIIAGADFILIPSRFEPCGLIQLH 495 (611)
Q Consensus 418 d~li~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~-~~~~~~-~i~~~aDv~l~pS~~E~~gl~~lE 495 (611)
+..++.++.+.+-.++++=+--..+.-.+.++++.+++++-+.+.+.. +.+... .+-++||+++.|... .-++-.
T Consensus 46 ~~a~~~a~al~~gGi~~iEvt~~t~~a~e~I~~l~~~~~~~~iGaGTVlt~~~a~~Ai~AGA~fIvsP~~~---~~vi~~ 122 (232)
T 4e38_A 46 EDIIPLGKVLAENGLPAAEITFRSDAAVEAIRLLRQAQPEMLIGAGTILNGEQALAAKEAGATFVVSPGFN---PNTVRA 122 (232)
T ss_dssp GGHHHHHHHHHHTTCCEEEEETTSTTHHHHHHHHHHHCTTCEEEEECCCSHHHHHHHHHHTCSEEECSSCC---HHHHHH
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHhCCCCEEeECCcCCHHHHHHHHHcCCCEEEeCCCC---HHHHHH
Confidence 344455555544455544443333335566777777776544554443 333333 466788888877632 122233
Q ss_pred HHHcCCceEE
Q 007247 496 AMRYGTVPIV 505 (611)
Q Consensus 496 Ama~G~PvI~ 505 (611)
+-.+|+|++.
T Consensus 123 ~~~~gi~~ip 132 (232)
T 4e38_A 123 CQEIGIDIVP 132 (232)
T ss_dssp HHHHTCEEEC
T ss_pred HHHcCCCEEc
Confidence 4455666554
No 298
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=21.81 E-value=72 Score=28.64 Aligned_cols=38 Identities=13% Similarity=0.080 Sum_probs=31.2
Q ss_pred ceEEEEeeeecCccccccHHHHhccchHHHHh-CCCeEEEEeec
Q 007247 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAA-NGHRVMTIAPR 127 (611)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~-~Gh~V~vit~~ 127 (611)
|||++|... + +|....+...++..+.+ .|++|.++...
T Consensus 5 ~kiliiy~S--~---~GnT~~~a~~i~~~l~~~~g~~v~~~~l~ 43 (188)
T 2ark_A 5 GKVLVIYDT--R---TGNTKKMAELVAEGARSLEGTEVRLKHVD 43 (188)
T ss_dssp EEEEEEECC--S---SSHHHHHHHHHHHHHHTSTTEEEEEEETT
T ss_pred CEEEEEEEC--C---CcHHHHHHHHHHHHHhhcCCCeEEEEEhh
Confidence 689998753 3 58888899999999998 99999988654
No 299
>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1
Probab=21.68 E-value=4e+02 Score=24.74 Aligned_cols=85 Identities=12% Similarity=0.073 Sum_probs=52.7
Q ss_pred HHHHHHHHhcccCCcEEEEEeCCCchhHHHHHHHHHHCCCceEEeccc-ChHHHH-HHHHHccEEEeCCCCCCCcHHHHH
Q 007247 418 DILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKF-NIPLAH-MIIAGADFILIPSRFEPCGLIQLH 495 (611)
Q Consensus 418 d~li~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~-~~~~~~-~i~~~aDv~l~pS~~E~~gl~~lE 495 (611)
+.+++.++.+.+-.+.++=+......-.+.++++.+++++-+.+.+.. ..+... .+-.+||+++.|... .-++-.
T Consensus 29 ~~~~~~~~al~~gGv~~iel~~k~~~~~~~i~~l~~~~~~l~vgaGtvl~~d~~~~A~~aGAd~v~~p~~d---~~v~~~ 105 (224)
T 1vhc_A 29 DDILPLADTLAKNGLSVAEITFRSEAAADAIRLLRANRPDFLIAAGTVLTAEQVVLAKSSGADFVVTPGLN---PKIVKL 105 (224)
T ss_dssp GGHHHHHHHHHHTTCCEEEEETTSTTHHHHHHHHHHHCTTCEEEEESCCSHHHHHHHHHHTCSEEECSSCC---HHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEeccCchHHHHHHHHHHhCcCcEEeeCcEeeHHHHHHHHHCCCCEEEECCCC---HHHHHH
Confidence 345556666655567776667655556778888988888645444333 344443 467889999888532 122344
Q ss_pred HHHcCCceEE
Q 007247 496 AMRYGTVPIV 505 (611)
Q Consensus 496 Ama~G~PvI~ 505 (611)
+-.+|.|+|.
T Consensus 106 ar~~g~~~i~ 115 (224)
T 1vhc_A 106 CQDLNFPITP 115 (224)
T ss_dssp HHHTTCCEEC
T ss_pred HHHhCCCEEe
Confidence 5557777665
No 300
>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}
Probab=21.68 E-value=4.9e+02 Score=25.25 Aligned_cols=107 Identities=12% Similarity=0.087 Sum_probs=61.9
Q ss_pred EEEEEcCccccc-CHHHHHHHHHhcccCCcEEEEEeCCCc---hhHHHHHHHHHHCCC-ceEEecc-----cChHHHHHH
Q 007247 404 VIGFIGRLEEQK-GSDILAAAIPHFIKENVQIIVLGTGKK---PMEKQLEQLEILYPE-KARGVAK-----FNIPLAHMI 473 (611)
Q Consensus 404 ~il~iGrl~~~K-g~d~li~a~~~l~~~~~~lvivG~g~~---~~~~~l~~l~~~~~~-~v~~~~~-----~~~~~~~~i 473 (611)
.++.+|.-+... +..++-+.++....++.+++++.+... .+.+...+.-.+++- .+..+.- .+.+...+.
T Consensus 28 ~l~iiGGgedk~~~~~i~~~~v~lagg~~~~I~~IptAs~~~~~~~~~~~~~f~~lG~~~v~~L~i~~r~~a~~~~~~~~ 107 (291)
T 3en0_A 28 AILIIGGAEDKVHGREILQTFWSRSGGNDAIIGIIPSASREPLLIGERYQTIFSDMGVKELKVLDIRDRAQGDDSGYRLF 107 (291)
T ss_dssp CEEEECSSCCSSSCCHHHHHHHHHTTGGGCEEEEECTTCSSHHHHHHHHHHHHHHHCCSEEEECCCCSGGGGGCHHHHHH
T ss_pred eEEEEECCCCccChHHHHHHHHHHcCCCCCeEEEEeCCCCChHHHHHHHHHHHHHcCCCeeEEEEecCccccCCHHHHHH
Confidence 455666655433 344444445544445678888877442 233334444334443 3433322 223444568
Q ss_pred HHHccEEEeCCC--------CCCCcH--HHHHHHHcC-CceEEcCCcc
Q 007247 474 IAGADFILIPSR--------FEPCGL--IQLHAMRYG-TVPIVASTGG 510 (611)
Q Consensus 474 ~~~aDv~l~pS~--------~E~~gl--~~lEAma~G-~PvI~s~~gg 510 (611)
+..||+++++-= +...++ .+.|+...| +|++.++.|.
T Consensus 108 l~~ad~I~v~GGnt~~l~~~l~~t~l~~~L~~~~~~G~~~~~GtSAGA 155 (291)
T 3en0_A 108 VEQCTGIFMTGGDQLRLCGLLADTPLMDRIRQRVHNGEISLAGTSAGA 155 (291)
T ss_dssp HHHCSEEEECCSCHHHHHHHHTTCHHHHHHHHHHHTTSSEEEEETHHH
T ss_pred HhcCCEEEECCCCHHHHHHHHHhCCHHHHHHHHHHCCCeEEEEeCHHH
Confidence 999999998751 233444 577888899 8999888764
No 301
>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}
Probab=21.63 E-value=2.6e+02 Score=28.51 Aligned_cols=44 Identities=34% Similarity=0.404 Sum_probs=31.1
Q ss_pred HHHHHHHccEEEe--CCCCC----C---CcHHHHHHHHcCCceEEcCCccccc
Q 007247 470 AHMIIAGADFILI--PSRFE----P---CGLIQLHAMRYGTVPIVASTGGLVD 513 (611)
Q Consensus 470 ~~~i~~~aDv~l~--pS~~E----~---~gl~~lEAma~G~PvI~s~~gg~~e 513 (611)
+.++++.||++++ |...+ + ++-..++.|.-|..+|-+..|++.+
T Consensus 161 l~ell~~aDvV~l~~Plt~~g~~~T~~li~~~~l~~mk~gailIN~sRG~vvd 213 (380)
T 2o4c_A 161 LERLLAEADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASRGAVVD 213 (380)
T ss_dssp HHHHHHHCSEEEECCCCCSSSSSCCTTSBCHHHHHTSCTTEEEEECSCGGGBC
T ss_pred HHHHHHhCCEEEEeccCccccccchhhhcCHHHHhhCCCCcEEEECCCCcccC
Confidence 4568999999886 43334 3 3345788888888888888777655
No 302
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=21.62 E-value=98 Score=27.06 Aligned_cols=39 Identities=10% Similarity=0.007 Sum_probs=31.5
Q ss_pred CceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEeec
Q 007247 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (611)
Q Consensus 84 ~MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~~ 127 (611)
..||++|.. .+ +|....+...++..|.+.|++|.++-..
T Consensus 4 ~~kv~IvY~--S~---~GnT~~iA~~ia~~l~~~g~~v~~~~~~ 42 (159)
T 3fni_A 4 ETSIGVFYV--SE---YGYSDRLAQAIINGITKTGVGVDVVDLG 42 (159)
T ss_dssp CCEEEEEEC--TT---STTHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCEEEEEEE--CC---ChHHHHHHHHHHHHHHHCCCeEEEEECc
Confidence 357777764 24 6999999999999999999999888654
No 303
>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*
Probab=21.56 E-value=58 Score=33.10 Aligned_cols=36 Identities=22% Similarity=0.231 Sum_probs=26.9
Q ss_pred cCCCceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEeec
Q 007247 81 CGVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (611)
Q Consensus 81 ~~~~MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~~ 127 (611)
.++.++|++|..- .+|+. +|..|++.|++|+|+=..
T Consensus 23 ~~~~~dV~IVGaG------~aGl~-----~A~~L~~~G~~v~v~E~~ 58 (398)
T 2xdo_A 23 LLSDKNVAIIGGG------PVGLT-----MAKLLQQNGIDVSVYERD 58 (398)
T ss_dssp CCTTCEEEEECCS------HHHHH-----HHHHHHTTTCEEEEEECS
T ss_pred ccCCCCEEEECCC------HHHHH-----HHHHHHHCCCCEEEEeCC
Confidence 3456789999852 24555 788899999999999543
No 304
>3dfi_A Pseudoaglycone deacetylase DBV21; single alpha-beta domain, hydrolase; 2.10A {Actinoplanes teichomyceticus}
Probab=21.55 E-value=86 Score=30.31 Aligned_cols=40 Identities=13% Similarity=0.048 Sum_probs=27.6
Q ss_pred CceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEeecCC
Q 007247 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYD 129 (611)
Q Consensus 84 ~MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~~~~ 129 (611)
.|+||+|+++ |.+..= .++.+...++++|++|.+++-..+
T Consensus 7 ~~rvLvv~aH--PDDe~l----~~GGtia~~~~~G~~V~vv~~T~G 46 (270)
T 3dfi_A 7 RTRILAISPH--LDDAVL----SVGASLAQAEQDGGKVTVFTVFAG 46 (270)
T ss_dssp CSEEEEEESS--TTHHHH----HHHHHHHHHHHTTCEEEEEESSCC
T ss_pred CCCEEEEEeC--CchHHH----hhHHHHHHHHhCCCeEEEEEEeCC
Confidence 5899999985 764332 233455556788999999986533
No 305
>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2
Probab=21.47 E-value=57 Score=32.06 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=17.9
Q ss_pred ccHHHHhccchHHHHhCCCeEEEEee
Q 007247 101 GGLGDVLGGLPPALAANGHRVMTIAP 126 (611)
Q Consensus 101 GG~~~~~~~La~~L~~~Gh~V~vit~ 126 (611)
|++| ..+++.|.++||+|.++..
T Consensus 11 G~iG---~~l~~~L~~~g~~V~~~~r 33 (347)
T 1orr_A 11 GFLG---SNLASFALSQGIDLIVFDN 33 (347)
T ss_dssp SHHH---HHHHHHHHHTTCEEEEEEC
T ss_pred chhH---HHHHHHHHhCCCEEEEEeC
Confidence 5555 4578889999999999864
No 306
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=21.43 E-value=85 Score=30.76 Aligned_cols=41 Identities=24% Similarity=0.334 Sum_probs=31.4
Q ss_pred CCceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEeec
Q 007247 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (611)
Q Consensus 83 ~~MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~~ 127 (611)
.++|++.|++. -| .-|-..+..+||..|++.|.+|.+|-..
T Consensus 102 ~~~kvI~vts~-kg---G~GKTtva~nLA~~lA~~G~rVLLID~D 142 (299)
T 3cio_A 102 TENNILMITGA-TP---DSGKTFVSSTLAAVIAQSDQKVLFIDAD 142 (299)
T ss_dssp CSCCEEEEEES-SS---SSCHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCCeEEEEECC-CC---CCChHHHHHHHHHHHHhCCCcEEEEECC
Confidence 46788888763 12 2366778899999999999999999654
No 307
>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1
Probab=21.41 E-value=1.9e+02 Score=28.76 Aligned_cols=44 Identities=16% Similarity=0.180 Sum_probs=30.9
Q ss_pred HHHHHHHccEEEeCC--CCCC---CcHHHHHHHHcCCceEEcCCccccc
Q 007247 470 AHMIIAGADFILIPS--RFEP---CGLIQLHAMRYGTVPIVASTGGLVD 513 (611)
Q Consensus 470 ~~~i~~~aDv~l~pS--~~E~---~gl~~lEAma~G~PvI~s~~gg~~e 513 (611)
+.++++.||++++.- ..++ ++-..++.|.-|.-+|-+..|++.+
T Consensus 191 l~ell~~aDvV~~~~P~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd 239 (333)
T 1dxy_A 191 LEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLID 239 (333)
T ss_dssp HHHHHHHCSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCTTSBC
T ss_pred HHHHHhcCCEEEEcCCCchhHHHHhCHHHHhhCCCCcEEEECCCCcccC
Confidence 456889999987643 3233 3445788888888888888777544
No 308
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=21.39 E-value=1.8e+02 Score=24.19 Aligned_cols=109 Identities=9% Similarity=0.010 Sum_probs=61.8
Q ss_pred CCcEEEEEeCCCchhHHHHHHHHHHCCCceEEecccChHHHHHHHHH--ccEEEeCCCC-CCCcHHHHHHHH-cCCceEE
Q 007247 430 ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAG--ADFILIPSRF-EPCGLIQLHAMR-YGTVPIV 505 (611)
Q Consensus 430 ~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~i~~~--aDv~l~pS~~-E~~gl~~lEAma-~G~PvI~ 505 (611)
...+++|+-+.+. ..+.++.+-...+-.+.. ..-+++..-+++.. .|++++=-.. +.-|+-+++.+. .++|+|.
T Consensus 7 r~~rILiVdD~~~-~~~~l~~~L~~~G~~v~~-~a~~g~eAl~~~~~~~~DlvllDi~mP~~~G~el~~~lr~~~ipvI~ 84 (123)
T 2lpm_A 7 RRLRVLVVEDESM-IAMLIEDTLCELGHEVAA-TASRMQEALDIARKGQFDIAIIDVNLDGEPSYPVADILAERNVPFIF 84 (123)
T ss_dssp CCCCEEEESSSTT-TSHHHHHHHHHHCCCCCB-CSCCHHHHHHHHHHCCSSEEEECSSSSSCCSHHHHHHHHHTCCSSCC
T ss_pred CCCEEEEEeCCHH-HHHHHHHHHHHCCCEEEE-EECCHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHcCCCCEEE
Confidence 4567777776542 344444444443322211 12245554455544 4777765443 445777777764 5788776
Q ss_pred cC-CcccccceecCcceEEecccccccccCCccCHHHHHHHHHHHH
Q 007247 506 AS-TGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRAL 550 (611)
Q Consensus 506 s~-~gg~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~~la~~i~~ll 550 (611)
-. .+......+-+..+|+. .|-+.+++.++|.+++
T Consensus 85 lTa~~~~~~~~~~g~~~yl~----------KP~~~~~L~~~l~~~~ 120 (123)
T 2lpm_A 85 ATGYGSKGLDTRYSNIPLLT----------KPFLDSELEAVLVQIS 120 (123)
T ss_dssp BCTTCTTSCCSSSCSCSCBC----------SSSSHHHHHHHHSTTC
T ss_pred EecCccHHHHHhCCCCcEEE----------CCCCHHHHHHHHHHHH
Confidence 43 33222222335566654 9999999999887764
No 309
>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}
Probab=21.35 E-value=58 Score=31.82 Aligned_cols=26 Identities=19% Similarity=0.217 Sum_probs=18.7
Q ss_pred cHHHHhccchHHHHhCCCeEEEEeec
Q 007247 102 GLGDVLGGLPPALAANGHRVMTIAPR 127 (611)
Q Consensus 102 G~~~~~~~La~~L~~~Gh~V~vit~~ 127 (611)
|.|..-..|++.|.++||+|.++...
T Consensus 9 atG~iG~~l~~~L~~~g~~V~~~~r~ 34 (330)
T 2c20_A 9 GAGYIGSHAVKKLVDEGLSVVVVDNL 34 (330)
T ss_dssp TTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CCcHHHHHHHHHHHhCCCEEEEEeCC
Confidence 33333356788899999999998643
No 310
>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*
Probab=21.33 E-value=2.1e+02 Score=28.40 Aligned_cols=92 Identities=11% Similarity=0.069 Sum_probs=56.5
Q ss_pred CcEEEEEcCcccccCHHHHHHHHHhcccCCcEEEEEeCCCchhHHHHHHHHHHCCCceEEecccChHHHHHHHH--HccE
Q 007247 402 IPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADF 479 (611)
Q Consensus 402 ~~~il~iGrl~~~Kg~d~li~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~i~~--~aDv 479 (611)
+..|+++|-=.- |...+++++.+. ++++++-+-+.+ .+..++++.+++ +... ....++++ ..|+
T Consensus 27 ~~rigiIG~G~~--g~~~~~~~l~~~--~~~~l~av~d~~---~~~~~~~a~~~g--~~~~-----~~~~~ll~~~~~D~ 92 (350)
T 3rc1_A 27 PIRVGVIGCADI--AWRRALPALEAE--PLTEVTAIASRR---WDRAKRFTERFG--GEPV-----EGYPALLERDDVDA 92 (350)
T ss_dssp CEEEEEESCCHH--HHHTHHHHHHHC--TTEEEEEEEESS---HHHHHHHHHHHC--SEEE-----ESHHHHHTCTTCSE
T ss_pred ceEEEEEcCcHH--HHHHHHHHHHhC--CCeEEEEEEcCC---HHHHHHHHHHcC--CCCc-----CCHHHHhcCCCCCE
Confidence 357888886221 112345666554 678887555444 344555666554 2222 22345665 5899
Q ss_pred EEeCCCCCCCcHHHHHHHHcCCceEEcC
Q 007247 480 ILIPSRFEPCGLIQLHAMRYGTVPIVAS 507 (611)
Q Consensus 480 ~l~pS~~E~~gl~~lEAma~G~PvI~s~ 507 (611)
+++.+....-.-.+.+|+..|++|++-.
T Consensus 93 V~i~tp~~~h~~~~~~al~aGk~Vl~EK 120 (350)
T 3rc1_A 93 VYVPLPAVLHAEWIDRALRAGKHVLAEK 120 (350)
T ss_dssp EEECCCGGGHHHHHHHHHHTTCEEEEES
T ss_pred EEECCCcHHHHHHHHHHHHCCCcEEEeC
Confidence 9988766555556788999999999865
No 311
>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*
Probab=21.16 E-value=2.1e+02 Score=28.46 Aligned_cols=44 Identities=23% Similarity=0.167 Sum_probs=30.2
Q ss_pred HHHHHHHccEEEeCCC--CCC---CcHHHHHHHHcCCceEEcCCccccc
Q 007247 470 AHMIIAGADFILIPSR--FEP---CGLIQLHAMRYGTVPIVASTGGLVD 513 (611)
Q Consensus 470 ~~~i~~~aDv~l~pS~--~E~---~gl~~lEAma~G~PvI~s~~gg~~e 513 (611)
+.++++.||++++.-. .+. ++-..++.|.-|.-+|....|++.+
T Consensus 193 l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~arg~~vd 241 (333)
T 1j4a_A 193 LDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVD 241 (333)
T ss_dssp HHHHHHHCSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGGGBC
T ss_pred HHHHHhhCCEEEEcCCCcHHHHHHHhHHHHhhCCCCcEEEECCCCcccC
Confidence 4568899999887433 233 3345778888888888887776544
No 312
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=21.06 E-value=3.4e+02 Score=22.08 Aligned_cols=92 Identities=17% Similarity=0.136 Sum_probs=42.2
Q ss_pred CcEEEEEeCCCchhHHHHHHHHHHCCCceEEe-cccChHHHHHHHH---HccEEEeCCCC-CCCcHHHHHHHH--cCCce
Q 007247 431 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGV-AKFNIPLAHMIIA---GADFILIPSRF-EPCGLIQLHAMR--YGTVP 503 (611)
Q Consensus 431 ~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~-~~~~~~~~~~i~~---~aDv~l~pS~~-E~~gl~~lEAma--~G~Pv 503 (611)
+.+++|+.+ +......++.+....++ +... ..-+.......+. ..|++++-... +.-|+.+++.+. ...|+
T Consensus 13 ~~~vlivdd-~~~~~~~l~~~L~~~~~-~~~v~~~~~~~~al~~l~~~~~~dlvilD~~l~~~~g~~~~~~lr~~~~~~i 90 (145)
T 3kyj_B 13 PYNVMIVDD-AAMMRLYIASFIKTLPD-FKVVAQAANGQEALDKLAAQPNVDLILLDIEMPVMDGMEFLRHAKLKTRAKI 90 (145)
T ss_dssp SEEEEEECS-CHHHHHHHHHHHTTCTT-EEEEEEESSHHHHHHHHHHCTTCCEEEECTTSCCCTTCHHHHHHHHHCCCEE
T ss_pred CCeEEEEcC-CHHHHHHHHHHHHhCCC-ceEEEEECCHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCe
Confidence 344444443 33345555555544422 2222 1223333333333 35887776544 345666666654 23444
Q ss_pred EEcCC--c-c---cccceecCcceEEe
Q 007247 504 IVAST--G-G---LVDTVEEGFTGFQM 524 (611)
Q Consensus 504 I~s~~--g-g---~~e~v~~g~~G~l~ 524 (611)
|.-.. . . ..+.+..|..+|+.
T Consensus 91 iil~~~~~~~~~~~~~~~~~ga~~~l~ 117 (145)
T 3kyj_B 91 CMLSSVAVSGSPHAARARELGADGVVA 117 (145)
T ss_dssp C-CBSSCSTTSSHHHHHHHTTCSCCCB
T ss_pred EEEEEeccCChHHHHHHHhCCCCEEEe
Confidence 33222 1 1 22344557777765
No 313
>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}
Probab=21.04 E-value=60 Score=32.12 Aligned_cols=34 Identities=32% Similarity=0.508 Sum_probs=23.8
Q ss_pred CCCceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEeec
Q 007247 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (611)
Q Consensus 82 ~~~MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~~ 127 (611)
...|||++|+. |..|. .++..|++.||+|+++ .+
T Consensus 17 ~~~~kI~IiGa--------Ga~G~---~~a~~L~~~G~~V~l~-~~ 50 (318)
T 3hwr_A 17 FQGMKVAIMGA--------GAVGC---YYGGMLARAGHEVILI-AR 50 (318)
T ss_dssp ---CEEEEESC--------SHHHH---HHHHHHHHTTCEEEEE-CC
T ss_pred ccCCcEEEECc--------CHHHH---HHHHHHHHCCCeEEEE-Ec
Confidence 44789999984 44443 3677789999999999 54
No 314
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}
Probab=21.03 E-value=61 Score=31.19 Aligned_cols=35 Identities=29% Similarity=0.314 Sum_probs=24.0
Q ss_pred CceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEeec
Q 007247 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (611)
Q Consensus 84 ~MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~~ 127 (611)
..|+++|+.- .||+| ..+++.|+++|++|.++...
T Consensus 23 ~~k~~lVTGa------s~GIG---~aia~~la~~G~~V~~~~r~ 57 (279)
T 3sju_A 23 RPQTAFVTGV------SSGIG---LAVARTLAARGIAVYGCARD 57 (279)
T ss_dssp --CEEEEEST------TSHHH---HHHHHHHHHTTCEEEEEESC
T ss_pred CCCEEEEeCC------CCHHH---HHHHHHHHHCCCEEEEEeCC
Confidence 4567777732 46666 45788999999999887643
No 315
>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}
Probab=21.01 E-value=2.3e+02 Score=28.34 Aligned_cols=92 Identities=12% Similarity=0.135 Sum_probs=58.3
Q ss_pred CcEEEEEcCcccccCHHHHHHHHHhcccCCcEEEEEeCCCchhHHHHHHHHHHCCCceEEecccChHHHHHHHHH--ccE
Q 007247 402 IPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAG--ADF 479 (611)
Q Consensus 402 ~~~il~iGrl~~~Kg~d~li~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~i~~~--aDv 479 (611)
+..|+.+|-= .-+...++.++. .++++++-+-+.. .+..++++.+++. ... + ....++++. .|+
T Consensus 26 ~irvgiiG~G--~~~~~~~~~~~~---~~~~~lvav~d~~---~~~a~~~a~~~~~-~~~---~--~~~~~ll~~~~vD~ 91 (361)
T 3u3x_A 26 ELRFAAVGLN--HNHIYGQVNCLL---RAGARLAGFHEKD---DALAAEFSAVYAD-ARR---I--ATAEEILEDENIGL 91 (361)
T ss_dssp CCEEEEECCC--STTHHHHHHHHH---HTTCEEEEEECSC---HHHHHHHHHHSSS-CCE---E--SCHHHHHTCTTCCE
T ss_pred CcEEEEECcC--HHHHHHHHHHhh---cCCcEEEEEEcCC---HHHHHHHHHHcCC-Ccc---c--CCHHHHhcCCCCCE
Confidence 3578888842 224344555554 2688988777665 4455667777652 111 1 123456664 799
Q ss_pred EEeCCCCCCCcHHHHHHHHcCCceEEcC
Q 007247 480 ILIPSRFEPCGLIQLHAMRYGTVPIVAS 507 (611)
Q Consensus 480 ~l~pS~~E~~gl~~lEAma~G~PvI~s~ 507 (611)
+++.+....-.-.+.+|+..|++|+|-.
T Consensus 92 V~I~tp~~~H~~~~~~al~aGkhVl~EK 119 (361)
T 3u3x_A 92 IVSAAVSSERAELAIRAMQHGKDVLVDK 119 (361)
T ss_dssp EEECCCHHHHHHHHHHHHHTTCEEEEES
T ss_pred EEEeCChHHHHHHHHHHHHCCCeEEEeC
Confidence 9887765444456789999999999865
No 316
>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis}
Probab=20.84 E-value=3.4e+02 Score=27.10 Aligned_cols=85 Identities=12% Similarity=0.063 Sum_probs=54.6
Q ss_pred HHHHHHhCCCCCCCCcEEEEEcCcccccCHHHHHHHHHhcccCCcEEEEEeCCC----chhHHHHHHHHHHCCCceEEec
Q 007247 388 EALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGK----KPMEKQLEQLEILYPEKARGVA 463 (611)
Q Consensus 388 ~~~~~~~gl~~~~~~~~il~iGrl~~~Kg~d~li~a~~~l~~~~~~lvivG~g~----~~~~~~l~~l~~~~~~~v~~~~ 463 (611)
-.+++..|-- +...|.|+|-+ ..=..-++.++.++ ++++.++++.. +++.+.+++.+.+.+.++...-
T Consensus 168 ~TI~E~~G~l---~glkva~vGD~--~nva~Sl~~~~~~~---G~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~v~~~~ 239 (340)
T 4ep1_A 168 MTIYEETNTF---KGIKLAYVGDG--NNVCHSLLLASAKV---GMHMTVATPVGYRPNEEIVKKALAIAKETGAEIEILH 239 (340)
T ss_dssp HHHHHHHSCC---TTCEEEEESCC--CHHHHHHHHHHHHH---TCEEEEECCTTCCCCHHHHHHHHHHHHHHCCCEEEES
T ss_pred HHHHHHhCCC---CCCEEEEECCC--chhHHHHHHHHHHc---CCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEEC
Confidence 3566777732 34689999987 22346677788777 78999999843 2344555555556554444321
Q ss_pred ccChHHHHHHHHHccEEEeCCC
Q 007247 464 KFNIPLAHMIIAGADFILIPSR 485 (611)
Q Consensus 464 ~~~~~~~~~i~~~aDv~l~pS~ 485 (611)
.+.+.+.+||++.....
T Consensus 240 -----d~~eav~~aDVvyt~~w 256 (340)
T 4ep1_A 240 -----NPELAVNEADFIYTDVW 256 (340)
T ss_dssp -----CHHHHHTTCSEEEECCC
T ss_pred -----CHHHHhCCCCEEEecCc
Confidence 23457899999877554
No 317
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=20.81 E-value=4.9e+02 Score=24.01 Aligned_cols=120 Identities=15% Similarity=0.035 Sum_probs=62.1
Q ss_pred cEEEEEc-CcccccCHHHHHHHHHhcccCCcEEEEEeCCCchhHHHHHHHHHHCCCceEEeccc--ChHHHHHHHHHcc-
Q 007247 403 PVIGFIG-RLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKF--NIPLAHMIIAGAD- 478 (611)
Q Consensus 403 ~~il~iG-rl~~~Kg~d~li~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~--~~~~~~~i~~~aD- 478 (611)
|+.+..+ +.....|.+..++.+.+. .+..+++|+-.....+.+.+..++++.++...... ..+.+..+...+|
T Consensus 82 pv~~~~~~~~~~~~~~~~~~~~~~~~---Gad~v~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~t~~e~~~~~~~~~d~ 158 (248)
T 1geq_A 82 PIVLMTYYNPIYRAGVRNFLAEAKAS---GVDGILVVDLPVFHAKEFTEIAREEGIKTVFLAAPNTPDERLKVIDDMTTG 158 (248)
T ss_dssp CEEEEECHHHHHHHCHHHHHHHHHHH---TCCEEEETTCCGGGHHHHHHHHHHHTCEEEEEECTTCCHHHHHHHHHHCSS
T ss_pred CEEEEeccchhhhcCHHHHHHHHHHC---CCCEEEECCCChhhHHHHHHHHHHhCCCeEEEECCCCHHHHHHHHHhcCCC
Confidence 5554432 323345556666666655 67888888755333344444455555444333322 3445556777788
Q ss_pred EEEeCCCC--C----CCcH---HHHHHHHc--CCceEEcCC----cccccceecCcceEEec
Q 007247 479 FILIPSRF--E----PCGL---IQLHAMRY--GTVPIVAST----GGLVDTVEEGFTGFQMG 525 (611)
Q Consensus 479 v~l~pS~~--E----~~gl---~~lEAma~--G~PvI~s~~----gg~~e~v~~g~~G~l~~ 525 (611)
++.+-+.. . +++. ..++.+.. ++|+++.-. ..+.+++..|..|+++|
T Consensus 159 ~i~~~~~~G~~g~~~~~~~~~~~~i~~l~~~~~~pi~~~GGI~~~e~i~~~~~~Gad~vivG 220 (248)
T 1geq_A 159 FVYLVSLYGTTGAREEIPKTAYDLLRRAKRICRNKVAVGFGVSKREHVVSLLKEGANGVVVG 220 (248)
T ss_dssp EEEEECCC-------CCCHHHHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEEC
T ss_pred eEEEEECCccCCCCCCCChhHHHHHHHHHhhcCCCEEEEeecCCHHHHHHHHHcCCCEEEEc
Confidence 54332321 1 1222 24444433 788887531 11223445678888886
No 318
>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}
Probab=20.79 E-value=56 Score=31.31 Aligned_cols=34 Identities=26% Similarity=0.442 Sum_probs=24.3
Q ss_pred ceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEeec
Q 007247 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (611)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~~ 127 (611)
+|+++|+.- .||+| ..+++.|+++|++|.++...
T Consensus 5 ~k~vlVTGa------s~gIG---~~~a~~l~~~G~~V~~~~r~ 38 (281)
T 3m1a_A 5 AKVWLVTGA------SSGFG---RAIAEAAVAAGDTVIGTARR 38 (281)
T ss_dssp CCEEEETTT------TSHHH---HHHHHHHHHTTCEEEEEESS
T ss_pred CcEEEEECC------CChHH---HHHHHHHHHCCCEEEEEeCC
Confidence 566666631 45666 45888999999999888654
No 319
>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}
Probab=20.79 E-value=62 Score=31.88 Aligned_cols=36 Identities=19% Similarity=0.343 Sum_probs=24.0
Q ss_pred CCCceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEeec
Q 007247 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (611)
Q Consensus 82 ~~~MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~~ 127 (611)
.++|+|++.+. +|++| ..+++.|.++||+|.++...
T Consensus 19 ~~~~~vlVTGa-------tG~iG---~~l~~~L~~~g~~V~~~~r~ 54 (333)
T 2q1w_A 19 SHMKKVFITGI-------CGQIG---SHIAELLLERGDKVVGIDNF 54 (333)
T ss_dssp --CCEEEEETT-------TSHHH---HHHHHHHHHTTCEEEEEECC
T ss_pred CCCCEEEEeCC-------ccHHH---HHHHHHHHHCCCEEEEEECC
Confidence 33566665543 35555 45778899999999998754
No 320
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=20.68 E-value=3.1e+02 Score=21.42 Aligned_cols=108 Identities=11% Similarity=0.166 Sum_probs=61.6
Q ss_pred cEEEEEeCCCchhHHHHHHHHHHCCCceEEecccChHHHHHHHH--HccEEEeCCCC-CCCcHHHHHHHH--cCCceEEc
Q 007247 432 VQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMR--YGTVPIVA 506 (611)
Q Consensus 432 ~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~i~~--~aDv~l~pS~~-E~~gl~~lEAma--~G~PvI~s 506 (611)
.+++|+.+.+ ...+.++......+-.+. ..-+.......+. ..|++++-... +.-|+.+++.+. ..+|+|.-
T Consensus 4 ~~ilivdd~~-~~~~~l~~~l~~~~~~v~--~~~~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ii~~ 80 (123)
T 1xhf_A 4 PHILIVEDEL-VTRNTLKSIFEAEGYDVF--EATDGAEMHQILSEYDINLVIMDINLPGKNGLLLARELREQANVALMFL 80 (123)
T ss_dssp CEEEEECSCH-HHHHHHHHHHHTTTCEEE--EESSHHHHHHHHHHSCCSEEEECSSCSSSCHHHHHHHHHHHCCCEEEEE
T ss_pred ceEEEEeCCH-HHHHHHHHHHhhCCcEEE--EeCCHHHHHHHHhcCCCCEEEEcCCCCCCCHHHHHHHHHhCCCCcEEEE
Confidence 3566666543 344445554444332222 2223333333443 35888775544 335666666664 46776654
Q ss_pred C-Ccc---cccceecCcceEEecccccccccCCccCHHHHHHHHHHHHHh
Q 007247 507 S-TGG---LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (611)
Q Consensus 507 ~-~gg---~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~~la~~i~~ll~~ 552 (611)
. ... ..+.++.|..+++. .|-+.+++...+..++..
T Consensus 81 s~~~~~~~~~~~~~~g~~~~l~----------KP~~~~~l~~~i~~~~~~ 120 (123)
T 1xhf_A 81 TGRDNEVDKILGLEIGADDYIT----------KPFNPRELTIRARNLLSR 120 (123)
T ss_dssp ESCCSHHHHHHHHHHTCSEEEE----------SSCCHHHHHHHHHHHHHH
T ss_pred ECCCChHHHHHHHhcCcceEEe----------CCCCHHHHHHHHHHHHHH
Confidence 3 222 22344567788987 899999999999887753
No 321
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=20.64 E-value=3.4e+02 Score=25.09 Aligned_cols=108 Identities=14% Similarity=0.067 Sum_probs=58.8
Q ss_pred cEEEEEeCCCchhHHHHHHHHHHCCCceEEecccChHHHHHHHH--HccEEEeCCCC-CCCcHHHHHHHHc--CCceEEc
Q 007247 432 VQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMRY--GTVPIVA 506 (611)
Q Consensus 432 ~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~i~~--~aDv~l~pS~~-E~~gl~~lEAma~--G~PvI~s 506 (611)
.+++|+.+.+ ...+.+..+....+..+ ....+.......+. ..|++++-... +.-|+.+++.+.. .+|+|+-
T Consensus 38 ~~ILivdd~~-~~~~~l~~~L~~~g~~v--~~~~~~~~al~~~~~~~~DlvllD~~lp~~~G~~l~~~lr~~~~~~iI~l 114 (249)
T 3q9s_A 38 QRILVIEDDH-DIANVLRMDLTDAGYVV--DHADSAMNGLIKAREDHPDLILLDLGLPDFDGGDVVQRLRKNSALPIIVL 114 (249)
T ss_dssp CEEEEECSCH-HHHHHHHHHHHTTTCEE--EEESSHHHHHHHHHHSCCSEEEEECCSCHHHHHHHHHHHHTTCCCCEEEE
T ss_pred CEEEEEECCH-HHHHHHHHHHHHCCCEE--EEeCCHHHHHHHHhcCCCCEEEEcCCCCCCCHHHHHHHHHcCCCCCEEEE
Confidence 4566665443 23444444443333212 11223333322332 35777765443 2346666666653 4666654
Q ss_pred CCcc----cccceecCcceEEecccccccccCCccCHHHHHHHHHHHHHh
Q 007247 507 STGG----LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (611)
Q Consensus 507 ~~gg----~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~~la~~i~~ll~~ 552 (611)
.... ..+.+..|..||+. .|.+.+++..+|..++..
T Consensus 115 t~~~~~~~~~~a~~~Ga~~yl~----------Kp~~~~~L~~~i~~~l~~ 154 (249)
T 3q9s_A 115 TARDTVEEKVRLLGLGADDYLI----------KPFHPDELLARVKVQLRQ 154 (249)
T ss_dssp ESCCSHHHHHHHHHHTCSEEEE----------SSCCHHHHHHHHHHHHCC
T ss_pred ECCCCHHHHHHHHHCCCcEEEE----------CCCCHHHHHHHHHHHHhh
Confidence 3322 23344567889987 899999999999998863
No 322
>2p0o_A Hypothetical protein DUF871; structural genomics, TIM barrel, PF05 2, protein structure initiative, midwest center for structu genomics; 2.15A {Enterococcus faecalis}
Probab=20.62 E-value=3.9e+02 Score=27.05 Aligned_cols=99 Identities=22% Similarity=0.318 Sum_probs=59.5
Q ss_pred CHHHHHHHHcCcCCCcccchhhhccceeEeeCCcccCCcCCCCccccccccCcchhhhccHHHHHHHHHHhCCCCCCCCc
Q 007247 324 SPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIP 403 (611)
Q Consensus 324 S~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~Ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~ 403 (611)
++.+.+.+.+ ++.+.+ ++...+| |-|.+...++.+ --..+++.-+++|+.
T Consensus 124 ~~~~l~~l~~---~~~n~~------~l~a~HN------FYPr~~TGLs~~---------~f~~~n~~~k~~Gi~------ 173 (372)
T 2p0o_A 124 TLEEVAELKA---HQADFS------RLEAWHN------YYPRPETGIGTT---------FFNEKNRWLKELGLQ------ 173 (372)
T ss_dssp CHHHHHHHHH---TTCCGG------GEEEECC------CCCSTTCSBCHH---------HHHHHHHHHHHTTCE------
T ss_pred CHHHHHHHHH---cCCChH------HeEEeec------cCCCCCCCCCHH---------HHHHHHHHHHHCCCc------
Confidence 5677777776 666655 7888887 334433222211 123466677778874
Q ss_pred EEEEEcC--------------cccccCHHHHHHHHHhcccCCcEEEEEeCCCchhHHHHHHHHH
Q 007247 404 VIGFIGR--------------LEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEI 453 (611)
Q Consensus 404 ~il~iGr--------------l~~~Kg~d~li~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~ 453 (611)
+..|+.. ++.+.+....++|...+....+.-|++|+... -++.++++..
T Consensus 174 t~AFI~g~~~~rGPl~eGLPTLE~HR~~~~~~~a~~L~~~~~iD~V~IGd~~~-S~~el~~l~~ 236 (372)
T 2p0o_A 174 VFTFVPGDGQTRGPIFAGLPTLEKHRGQNPFAAAVGLMADPYVDAVYIGDPTI-SERTMAQFGY 236 (372)
T ss_dssp EEEEECCSSSCCTTTCSCCCSBGGGTTSCHHHHHHHHHHSTTCCEEEECSSCC-CHHHHHHHHH
T ss_pred EEEEecCCCccCCCccCCCCchHHhCCCCHHHHHHHHHhcCCCCEEEECCCCC-CHHHHHHHHH
Confidence 4555543 55677777777777665545788899999542 2344444443
No 323
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=20.59 E-value=3.2e+02 Score=24.35 Aligned_cols=106 Identities=12% Similarity=0.122 Sum_probs=62.7
Q ss_pred EEEEEeCCCchhHHHHHHHHHHCCCceEEecccChHHHHHHHHHccEEEeCCCC-CCCcHHHHHHHH---cCCceEEcCC
Q 007247 433 QIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRF-EPCGLIQLHAMR---YGTVPIVAST 508 (611)
Q Consensus 433 ~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~i~~~aDv~l~pS~~-E~~gl~~lEAma---~G~PvI~s~~ 508 (611)
+++|+.+.+ ...+.+..+....+ .+. ...+.......+...|++++-... +.-|+.+++.+. ..+|+|.-..
T Consensus 4 ~ilivdd~~-~~~~~l~~~L~~~~-~v~--~~~~~~~al~~~~~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii~lt~ 79 (220)
T 1p2f_A 4 KIAVVDDDK-NILKKVSEKLQQLG-RVK--TFLTGEDFLNDEEAFHVVVLDVMLPDYSGYEICRMIKETRPETWVILLTL 79 (220)
T ss_dssp EEEEECSCH-HHHHHHHHHHTTTE-EEE--EESSHHHHHHCCSCCSEEEEESBCSSSBHHHHHHHHHHHCTTSEEEEEES
T ss_pred eEEEEeCCH-HHHHHHHHHHHhCC-CEE--EECCHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEEEEc
Confidence 566666543 34455555544433 222 112333332223567888875443 445777777665 4677766432
Q ss_pred -cc---cccceecCcceEEecccccccccCCccCHHHHHHHHHHHHHh
Q 007247 509 -GG---LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (611)
Q Consensus 509 -gg---~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~~la~~i~~ll~~ 552 (611)
.. ..+.+..|..|++. .|.+.+++.++|..++..
T Consensus 80 ~~~~~~~~~~~~~ga~~~l~----------Kp~~~~~L~~~i~~~~~~ 117 (220)
T 1p2f_A 80 LSDDESVLKGFEAGADDYVT----------KPFNPEILLARVKRFLER 117 (220)
T ss_dssp CCSHHHHHHHHHHTCSEEEE----------SSCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHcCCCEEEE----------CCCCHHHHHHHHHHHHcc
Confidence 22 23344567889987 899999999999998864
No 324
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=20.55 E-value=2.8e+02 Score=24.41 Aligned_cols=36 Identities=14% Similarity=0.023 Sum_probs=24.0
Q ss_pred HHHHHccEEEeCCC---C-CCCcHH---HHHHHHcCCceEEcC
Q 007247 472 MIIAGADFILIPSR---F-EPCGLI---QLHAMRYGTVPIVAS 507 (611)
Q Consensus 472 ~i~~~aDv~l~pS~---~-E~~gl~---~lEAma~G~PvI~s~ 507 (611)
..+..||++|.--. - +.-..+ +--|.+.|+|||+-.
T Consensus 63 ~~i~~aD~vVA~ldpf~g~~~D~GTafEiGyA~AlgKPVi~l~ 105 (161)
T 2f62_A 63 QMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAALNKMVLTFT 105 (161)
T ss_dssp HHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHhCCEEEEEecCCCCCCCCCcHHHHHHHHHHCCCEEEEEE
Confidence 58999999876532 1 222334 444778999999843
No 325
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=20.53 E-value=3.1e+02 Score=21.46 Aligned_cols=107 Identities=17% Similarity=0.197 Sum_probs=61.2
Q ss_pred cEEEEEeCCCchhHHHHHHHHHHCCCceEEecccChHHHHHHHH--HccEEEeCCCC-CCCcHHHHHHHH---cCCceEE
Q 007247 432 VQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMR---YGTVPIV 505 (611)
Q Consensus 432 ~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~i~~--~aDv~l~pS~~-E~~gl~~lEAma---~G~PvI~ 505 (611)
.+++|+.+.+ ...+.++.+....+-.+. ..-+....-..+. ..|++++-... +.-|+-+++.+. ..+|+|.
T Consensus 4 ~~ilivdd~~-~~~~~l~~~l~~~~~~v~--~~~~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~ 80 (124)
T 1srr_A 4 EKILIVDDQS-GIRILLNEVFNKEGYQTF--QAANGLQALDIVTKERPDLVLLDMKIPGMDGIEILKRMKVIDENIRVII 80 (124)
T ss_dssp CEEEEECSCH-HHHHHHHHHHHTTTCEEE--EESSHHHHHHHHHHHCCSEEEEESCCTTCCHHHHHHHHHHHCTTCEEEE
T ss_pred ceEEEEeCCH-HHHHHHHHHHHHCCcEEE--EeCCHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHhCCCCCEEE
Confidence 3566776543 344555555444332222 2223333333332 46888875443 335666666664 3677665
Q ss_pred cC-Ccc---cccceecCcceEEecccccccccCCccCHHHHHHHHHHHHH
Q 007247 506 AS-TGG---LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALA 551 (611)
Q Consensus 506 s~-~gg---~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~~la~~i~~ll~ 551 (611)
-. ... ..+....|..+++. .|.+.+++.+.|.+++.
T Consensus 81 ~s~~~~~~~~~~~~~~g~~~~l~----------KP~~~~~l~~~i~~~~~ 120 (124)
T 1srr_A 81 MTAYGELDMIQESKELGALTHFA----------KPFDIDEIRDAVKKYLP 120 (124)
T ss_dssp EESSCCHHHHHHHHHHTCCCEEE----------SSCCHHHHHHHHHHHSC
T ss_pred EEccCchHHHHHHHhcChHhhcc----------CCCCHHHHHHHHHHHhc
Confidence 43 322 22334457778876 89999999999988765
No 326
>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii}
Probab=20.47 E-value=52 Score=32.27 Aligned_cols=35 Identities=17% Similarity=0.271 Sum_probs=22.6
Q ss_pred CCCceEEEEeeeecCccccccHHHHhccchHHHHhCC--CeEEEEee
Q 007247 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANG--HRVMTIAP 126 (611)
Q Consensus 82 ~~~MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~G--h~V~vit~ 126 (611)
|++|||++.+. +|++| ..+++.|.++| |+|.++..
T Consensus 1 M~~m~vlVTGa-------tG~iG---~~l~~~L~~~g~~~~V~~~~r 37 (336)
T 2hun_A 1 MHSMKLLVTGG-------MGFIG---SNFIRYILEKHPDWEVINIDK 37 (336)
T ss_dssp --CCEEEEETT-------TSHHH---HHHHHHHHHHCTTCEEEEEEC
T ss_pred CCCCeEEEECC-------CchHH---HHHHHHHHHhCCCCEEEEEec
Confidence 45688765543 35555 45678888886 88888764
No 327
>2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold, electron transport; NMR {Escherichia coli} PDB: 2hnb_A
Probab=20.45 E-value=67 Score=27.44 Aligned_cols=36 Identities=25% Similarity=0.311 Sum_probs=28.8
Q ss_pred ceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEe
Q 007247 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIA 125 (611)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit 125 (611)
|||+++-. +.+|....+...++..|.+.|++|.++.
T Consensus 2 ~ki~I~Y~-----S~tGnT~~~A~~ia~~l~~~g~~v~~~~ 37 (147)
T 2hna_A 2 ADITLISG-----STLGGAEYVAEHLAEKLEEAGFTTETLH 37 (147)
T ss_dssp CSEEEECC-----TTSCCCHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CeEEEEEE-----CCchHHHHHHHHHHHHHHHCCCceEEec
Confidence 56766642 2479999999999999999999998773
No 328
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=20.39 E-value=3e+02 Score=21.30 Aligned_cols=107 Identities=11% Similarity=0.159 Sum_probs=61.9
Q ss_pred EEEEEeCCCchhHHHHHHHHHHCCCceEEecccChHHHHHHHH--HccEEEeCCCC-CCCcHHHHHHHHc---CCceEEc
Q 007247 433 QIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMRY---GTVPIVA 506 (611)
Q Consensus 433 ~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~i~~--~aDv~l~pS~~-E~~gl~~lEAma~---G~PvI~s 506 (611)
+++|+.+.+ .....+.......+-.+. ..-+.......+. ..|++++-... +.-|+.+++.+.. .+|+|.-
T Consensus 2 ~ilivdd~~-~~~~~l~~~l~~~g~~v~--~~~~~~~a~~~~~~~~~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii~~ 78 (121)
T 2pl1_A 2 RVLVVEDNA-LLRHHLKVQIQDAGHQVD--DAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVL 78 (121)
T ss_dssp EEEEECSCH-HHHHHHHHHHHHTTCEEE--EESSHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHHTTCCSCEEEE
T ss_pred eEEEEeCcH-HHHHHHHHHHhhcCCEEE--EeCCHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 456666543 344455554444442232 2223333333443 35888775443 3457777777753 5666654
Q ss_pred -CCcc---cccceecCcceEEecccccccccCCccCHHHHHHHHHHHHHh
Q 007247 507 -STGG---LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (611)
Q Consensus 507 -~~gg---~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~~la~~i~~ll~~ 552 (611)
.... ..+.++.|..+++. .|-+.+++...+..++..
T Consensus 79 s~~~~~~~~~~~~~~g~~~~l~----------kp~~~~~l~~~i~~~~~~ 118 (121)
T 2pl1_A 79 TARESWQDKVEVLSAGADDYVT----------KPFHIEEVMARMQALMRR 118 (121)
T ss_dssp ESCCCHHHHHHHHHTTCSEEEE----------SSCCHHHHHHHHHHHHHH
T ss_pred ecCCCHHHHHHHHHcCccceEE----------CCCCHHHHHHHHHHHHHh
Confidence 3332 23344567788987 899999999999988763
No 329
>2fb6_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.46A {Bacteroides thetaiotaomicron}
Probab=20.36 E-value=63 Score=26.98 Aligned_cols=40 Identities=10% Similarity=-0.070 Sum_probs=28.5
Q ss_pred CceEEEEeeeecCccccccHHHHhccchHHHHhCC--CeEEEEeec
Q 007247 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANG--HRVMTIAPR 127 (611)
Q Consensus 84 ~MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~G--h~V~vit~~ 127 (611)
.||++||...-.|. -.......+|..+.++| |+|.|+...
T Consensus 7 ~~K~~ivi~s~d~~----~~~~~al~~A~~a~~~G~~~eV~i~~~G 48 (117)
T 2fb6_A 7 NDKLTILWTTDNKD----TVFNMLAMYALNSKNRGWWKHINIILWG 48 (117)
T ss_dssp TSEEEEEECCCCHH----HHHHTHHHHHHHHHHHTSCSEEEEEECS
T ss_pred CCeEEEEEEcCChH----HHHHHHHHHHHHHHHcCCCCcEEEEEEC
Confidence 48999998763231 12245777888888999 899999744
No 330
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=20.31 E-value=3.2e+02 Score=25.47 Aligned_cols=117 Identities=13% Similarity=0.147 Sum_probs=60.8
Q ss_pred HHHHHHHHhcccCCcEEEEEeCCCchhHHHHHHHHHHCCCceEEe-cccChHHHHHHHHHccEEEeCCCCCCCcHHHHHH
Q 007247 418 DILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGV-AKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHA 496 (611)
Q Consensus 418 d~li~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~-~~~~~~~~~~i~~~aDv~l~pS~~E~~gl~~lEA 496 (611)
......+..|.+.+.+++++-.. ....++++..... +... ..|..+ .+.++|+++...-.+.....+.++
T Consensus 41 ~va~~ka~~Ll~~GA~VtVvap~---~~~~l~~l~~~~~--i~~i~~~~~~~----dL~~adLVIaAT~d~~~N~~I~~~ 111 (223)
T 3dfz_A 41 TIATRRIKGFLQEGAAITVVAPT---VSAEINEWEAKGQ--LRVKRKKVGEE----DLLNVFFIVVATNDQAVNKFVKQH 111 (223)
T ss_dssp HHHHHHHHHHGGGCCCEEEECSS---CCHHHHHHHHTTS--CEEECSCCCGG----GSSSCSEEEECCCCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEEEECCC---CCHHHHHHHHcCC--cEEEECCCCHh----HhCCCCEEEECCCCHHHHHHHHHH
Confidence 45555566666656666666543 2344566655432 3332 233332 467899888766554444445554
Q ss_pred HHcCCceEEcCCccccc-----ceecCcceEEecccccccccCCccCHHHHHHHHHHHHHh
Q 007247 497 MRYGTVPIVASTGGLVD-----TVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (611)
Q Consensus 497 ma~G~PvI~s~~gg~~e-----~v~~g~~G~l~~~~~~~~~~v~~~d~~~la~~i~~ll~~ 552 (611)
...|+||-+.+.....+ ++..+.--+-+ -..+..-.+|..|++-++.
T Consensus 112 ak~gi~VNvvD~p~~~~f~~Paiv~rg~l~iaI---------ST~G~sP~la~~iR~~ie~ 163 (223)
T 3dfz_A 112 IKNDQLVNMASSFSDGNIQIPAQFSRGRLSLAI---------STDGASPLLTKRIKEDLSS 163 (223)
T ss_dssp SCTTCEEEC-----CCSEECCEEEEETTEEEEE---------ECTTSCHHHHHHHHHHHHH
T ss_pred HhCCCEEEEeCCcccCeEEEeeEEEeCCEEEEE---------ECCCCCcHHHHHHHHHHHH
Confidence 45899988888765444 34433222211 0234455777777777764
No 331
>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}
Probab=20.25 E-value=74 Score=28.94 Aligned_cols=40 Identities=10% Similarity=0.150 Sum_probs=28.1
Q ss_pred ceEEEEeeeecCcc-ccccHHHHhccchHHHHhCC--CeEEEEee
Q 007247 85 LNILFVGTEVAPWS-KTGGLGDVLGGLPPALAANG--HRVMTIAP 126 (611)
Q Consensus 85 MkIl~v~~~~~P~~-~~GG~~~~~~~La~~L~~~G--h~V~vit~ 126 (611)
|||++|... |.. ..|-...++..++..+.+.| ++|.++-.
T Consensus 2 ~kilii~gS--~r~~~~s~t~~la~~~~~~~~~~g~~~~v~~~dL 44 (208)
T 2hpv_A 2 SKLLVVKAH--PLTKEESRSVRALETFLASYRETNPSDEIEILDV 44 (208)
T ss_dssp CEEEEEECC--SSCTTTCHHHHHHHHHHHHHHHHCTTSEEEEEET
T ss_pred CeEEEEEec--CCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEeeC
Confidence 799999874 531 12445556666788888887 99998853
No 332
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=20.09 E-value=3.1e+02 Score=21.31 Aligned_cols=107 Identities=7% Similarity=0.069 Sum_probs=62.6
Q ss_pred cEEEEEeCCCchhHHHHHHHHHHCCCceEEecccChHHHHHHHH--HccEEEeCCCC--CCCcHHHHHHHH-----cCCc
Q 007247 432 VQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRF--EPCGLIQLHAMR-----YGTV 502 (611)
Q Consensus 432 ~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~i~~--~aDv~l~pS~~--E~~gl~~lEAma-----~G~P 502 (611)
.+++|+.+.+ ...+.+.......+-++. ..-+.......+. ..|++++-... +.-|..+++.+. ..+|
T Consensus 6 ~~ilivdd~~-~~~~~l~~~L~~~g~~v~--~~~~~~~a~~~~~~~~~dlvi~d~~~~~~~~g~~~~~~l~~~~~~~~~~ 82 (127)
T 2gkg_A 6 KKILIVESDT-ALSATLRSALEGRGFTVD--ETTDGKGSVEQIRRDRPDLVVLAVDLSAGQNGYLICGKLKKDDDLKNVP 82 (127)
T ss_dssp CEEEEECSCH-HHHHHHHHHHHHHTCEEE--EECCHHHHHHHHHHHCCSEEEEESBCGGGCBHHHHHHHHHHSTTTTTSC
T ss_pred CeEEEEeCCH-HHHHHHHHHHHhcCceEE--EecCHHHHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCccccCCC
Confidence 3667776544 244444444443332232 2223333333333 36888775443 335777777775 3678
Q ss_pred eEEcCCcc----cccceecCcceEEecccccccccCCccCHHHHHHHHHHHHHh
Q 007247 503 PIVASTGG----LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (611)
Q Consensus 503 vI~s~~gg----~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~~la~~i~~ll~~ 552 (611)
+|+. ... ..+.+..|..+++. .|-+.+++.+.|.+++..
T Consensus 83 ii~~-~~~~~~~~~~~~~~g~~~~l~----------kp~~~~~l~~~i~~~~~~ 125 (127)
T 2gkg_A 83 IVII-GNPDGFAQHRKLKAHADEYVA----------KPVDADQLVERAGALIGF 125 (127)
T ss_dssp EEEE-ECGGGHHHHHHSTTCCSEEEE----------SSCCHHHHHHHHHHHHCC
T ss_pred EEEE-ecCCchhHHHHHHhCcchhee----------CCCCHHHHHHHHHHHHcC
Confidence 7776 322 22344567778886 899999999999988754
No 333
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=20.05 E-value=43 Score=28.51 Aligned_cols=33 Identities=27% Similarity=0.231 Sum_probs=24.4
Q ss_pred CceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEeec
Q 007247 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (611)
Q Consensus 84 ~MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~~ 127 (611)
..+|++++. |.+-..+++.|.+.||+|+++..+
T Consensus 7 ~~~viIiG~-----------G~~G~~la~~L~~~g~~v~vid~~ 39 (140)
T 3fwz_A 7 CNHALLVGY-----------GRVGSLLGEKLLASDIPLVVIETS 39 (140)
T ss_dssp CSCEEEECC-----------SHHHHHHHHHHHHTTCCEEEEESC
T ss_pred CCCEEEECc-----------CHHHHHHHHHHHHCCCCEEEEECC
Confidence 356777762 334456888999999999999865
No 334
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=20.04 E-value=51 Score=31.90 Aligned_cols=42 Identities=10% Similarity=-0.001 Sum_probs=26.8
Q ss_pred CceEEEEeeeecCccccccHHHHhccchHHHHhCCCeEEEEeec
Q 007247 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (611)
Q Consensus 84 ~MkIl~v~~~~~P~~~~GG~~~~~~~La~~L~~~Gh~V~vit~~ 127 (611)
+|||+++.....+. ..-.-.....+++++.++||+|.++.+.
T Consensus 2 ~~~i~il~gg~s~e--~~~s~~~~~~l~~al~~~G~~v~~~~~~ 43 (306)
T 1iow_A 2 TDKIAVLLGGTSAE--REVSLNSGAAVLAGLREGGIDAYPVDPK 43 (306)
T ss_dssp CCEEEEECCCSSTT--HHHHHHHHHHHHHHHHHTTCEEEEECTT
T ss_pred CcEEEEEeCCCCcc--ceEcHHhHHHHHHHHHHCCCeEEEEecC
Confidence 58999998532110 0000012346899999999999999765
No 335
>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}
Probab=20.03 E-value=1e+02 Score=29.62 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=19.8
Q ss_pred cccHHHHhccchHHHHhCCCeEEEEeec
Q 007247 100 TGGLGDVLGGLPPALAANGHRVMTIAPR 127 (611)
Q Consensus 100 ~GG~~~~~~~La~~L~~~Gh~V~vit~~ 127 (611)
.||+| ..+++.|+++|++|.++...
T Consensus 25 s~gIG---~~~a~~L~~~G~~V~~~~r~ 49 (291)
T 3rd5_A 25 NSGLG---AVTARELARRGATVIMAVRD 49 (291)
T ss_dssp SSHHH---HHHHHHHHHTTCEEEEEESC
T ss_pred CChHH---HHHHHHHHHCCCEEEEEECC
Confidence 46777 45788999999999988754
Done!