Query 007251
Match_columns 611
No_of_seqs 301 out of 2374
Neff 6.9
Searched_HMMs 46136
Date Thu Mar 28 21:01:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007251.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007251hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02286 arginine-tRNA ligase 100.0 9E-125 2E-129 1055.2 56.2 537 73-611 5-542 (576)
2 COG0018 ArgS Arginyl-tRNA synt 100.0 4E-124 8E-129 1037.9 51.2 525 67-611 3-540 (577)
3 KOG4426 Arginyl-tRNA synthetas 100.0 4E-123 8E-128 953.7 46.7 562 43-611 49-615 (656)
4 PRK12451 arginyl-tRNA syntheta 100.0 2E-115 5E-120 978.2 54.4 520 67-611 3-527 (562)
5 TIGR00456 argS arginyl-tRNA sy 100.0 4E-107 8E-112 914.7 54.9 518 68-611 2-529 (566)
6 PRK01611 argS arginyl-tRNA syn 100.0 1E-97 2E-102 829.0 48.9 461 63-609 1-469 (507)
7 KOG1195 Arginyl-tRNA synthetas 100.0 1.9E-87 4E-92 704.9 35.8 498 90-611 25-531 (567)
8 PF00750 tRNA-synt_1d: tRNA sy 100.0 2.6E-77 5.6E-82 637.0 24.1 339 166-516 2-354 (354)
9 cd00671 ArgRS_core catalytic c 100.0 1.3E-53 2.9E-58 424.7 23.2 209 185-453 1-212 (212)
10 PTZ00399 cysteinyl-tRNA-synthe 100.0 1.1E-33 2.4E-38 320.8 26.3 328 182-606 57-437 (651)
11 PLN02946 cysteine-tRNA ligase 100.0 8.6E-32 1.9E-36 297.7 26.2 319 182-605 77-442 (557)
12 PRK00260 cysS cysteinyl-tRNA s 100.0 7.8E-31 1.7E-35 289.1 27.8 309 182-606 20-375 (463)
13 PRK11893 methionyl-tRNA synthe 100.0 3.9E-30 8.5E-35 287.9 28.4 328 184-608 1-428 (511)
14 TIGR00398 metG methionyl-tRNA 100.0 6.2E-30 1.3E-34 287.4 29.8 328 187-609 2-457 (530)
15 COG0215 CysS Cysteinyl-tRNA sy 100.0 3.5E-29 7.5E-34 268.0 22.4 251 182-522 19-314 (464)
16 TIGR00435 cysS cysteinyl-tRNA 100.0 2E-28 4.4E-33 269.6 28.3 248 182-523 18-312 (465)
17 PRK14536 cysS cysteinyl-tRNA s 100.0 2.3E-28 5.1E-33 267.9 25.5 337 182-603 20-404 (490)
18 PRK14534 cysS cysteinyl-tRNA s 100.0 4.5E-28 9.7E-33 264.5 25.9 259 184-522 20-326 (481)
19 PRK14535 cysS cysteinyl-tRNA s 100.0 1.4E-27 2.9E-32 265.8 25.7 309 182-603 245-612 (699)
20 PRK00133 metG methionyl-tRNA s 100.0 2.7E-27 5.9E-32 272.3 28.9 323 184-609 2-456 (673)
21 PRK12418 cysteinyl-tRNA synthe 100.0 6.1E-27 1.3E-31 250.0 27.2 303 181-605 5-362 (384)
22 PF01406 tRNA-synt_1e: tRNA sy 100.0 7E-28 1.5E-32 246.7 15.3 247 181-521 4-297 (300)
23 TIGR03447 mycothiol_MshC cyste 100.0 1.1E-26 2.3E-31 249.2 24.3 250 183-521 34-334 (411)
24 PRK12268 methionyl-tRNA synthe 99.9 2.2E-26 4.7E-31 260.2 26.8 331 184-609 3-463 (556)
25 COG0143 MetG Methionyl-tRNA sy 99.9 4.2E-26 9.1E-31 252.6 28.1 330 183-608 4-463 (558)
26 PRK12267 methionyl-tRNA synthe 99.9 5.5E-26 1.2E-30 260.9 26.3 326 184-608 4-428 (648)
27 PLN02224 methionine-tRNA ligas 99.9 2.1E-25 4.5E-30 251.8 27.0 329 181-608 66-495 (616)
28 cd00668 Ile_Leu_Val_MetRS_core 99.9 5.2E-24 1.1E-28 224.2 21.4 253 185-514 1-312 (312)
29 PLN02610 probable methionyl-tR 99.9 9.1E-23 2E-27 236.7 28.1 333 183-608 16-484 (801)
30 KOG2007 Cysteinyl-tRNA synthet 99.9 3.2E-23 6.9E-28 219.4 20.3 328 181-606 51-425 (586)
31 cd00812 LeuRS_core catalytic c 99.9 2E-23 4.2E-28 219.9 16.1 240 185-516 1-314 (314)
32 cd00814 MetRS_core catalytic c 99.9 8.4E-23 1.8E-27 215.6 20.1 240 185-514 1-319 (319)
33 cd00674 LysRS_core_class_I cat 99.9 3.7E-22 7.9E-27 211.4 22.2 258 184-518 19-318 (353)
34 cd00672 CysRS_core catalytic c 99.9 7.3E-22 1.6E-26 196.4 18.6 192 182-515 17-213 (213)
35 cd00818 IleRS_core catalytic c 99.9 1.1E-21 2.4E-26 208.6 19.9 256 185-514 2-338 (338)
36 PRK13208 valS valyl-tRNA synth 99.9 2.6E-20 5.7E-25 218.7 30.7 128 183-350 37-169 (800)
37 cd00817 ValRS_core catalytic c 99.9 3E-21 6.4E-26 208.6 21.0 132 185-353 2-138 (382)
38 cd07956 Anticodon_Ia_Arg Antic 99.9 2.1E-22 4.5E-27 191.2 9.5 119 493-611 2-120 (156)
39 PRK05729 valS valyl-tRNA synth 99.9 3.3E-20 7.2E-25 219.4 29.8 137 434-606 507-646 (874)
40 cd00802 class_I_aaRS_core cata 99.9 8.5E-22 1.8E-26 184.1 12.1 143 188-452 1-143 (143)
41 TIGR00464 gltX_bact glutamyl-t 99.9 2.9E-21 6.3E-26 212.8 17.0 138 364-524 172-313 (470)
42 TIGR00422 valS valyl-tRNA synt 99.9 2.4E-19 5.3E-24 212.0 30.9 135 435-605 513-649 (861)
43 PRK01406 gltX glutamyl-tRNA sy 99.8 2.1E-20 4.6E-25 206.1 14.3 137 364-524 182-322 (476)
44 COG0525 ValS Valyl-tRNA synthe 99.8 3.5E-18 7.6E-23 195.2 31.7 139 427-605 508-649 (877)
45 KOG0436 Methionyl-tRNA synthet 99.8 1.2E-18 2.7E-23 181.1 23.0 315 194-607 49-475 (578)
46 PRK00750 lysK lysyl-tRNA synth 99.8 6.8E-19 1.5E-23 196.1 21.1 256 185-516 24-321 (510)
47 TIGR00392 ileS isoleucyl-tRNA 99.8 2.7E-18 5.9E-23 203.2 27.1 168 398-605 567-739 (861)
48 PRK06039 ileS isoleucyl-tRNA s 99.8 2.6E-17 5.7E-22 196.4 31.6 140 434-605 579-720 (975)
49 PF09334 tRNA-synt_1g: tRNA sy 99.8 1.5E-18 3.3E-23 187.6 16.7 113 187-352 2-117 (391)
50 PRK14900 valS valyl-tRNA synth 99.8 1.1E-16 2.3E-21 191.8 31.5 139 436-608 527-668 (1052)
51 PRK14895 gltX glutamyl-tRNA sy 99.8 5.2E-18 1.1E-22 186.3 17.7 245 185-524 4-311 (513)
52 PLN02943 aminoacyl-tRNA ligase 99.8 1.3E-16 2.8E-21 189.7 27.3 131 183-350 87-222 (958)
53 PRK05743 ileS isoleucyl-tRNA s 99.7 5.9E-16 1.3E-20 183.6 28.4 163 398-605 548-717 (912)
54 PRK12558 glutamyl-tRNA synthet 99.7 1.8E-17 4E-22 180.1 13.6 196 306-524 51-311 (445)
55 TIGR00467 lysS_arch lysyl-tRNA 99.7 5.5E-17 1.2E-21 179.9 17.3 256 184-519 18-317 (515)
56 PTZ00419 valyl-tRNA synthetase 99.7 1E-15 2.2E-20 183.5 28.7 133 182-350 58-195 (995)
57 PF03485 Arg_tRNA_synt_N: Argi 99.7 9.1E-18 2E-22 143.2 7.6 82 70-157 2-85 (85)
58 PRK13804 ileS isoleucyl-tRNA s 99.7 3.5E-15 7.7E-20 177.6 28.7 135 437-605 620-755 (961)
59 PLN02843 isoleucyl-tRNA synthe 99.7 6.9E-15 1.5E-19 175.2 29.4 172 398-605 567-744 (974)
60 TIGR00395 leuS_arch leucyl-tRN 99.7 1.2E-14 2.5E-19 173.1 30.6 137 183-350 24-167 (938)
61 PLN02381 valyl-tRNA synthetase 99.7 1.6E-14 3.5E-19 173.1 31.5 132 183-350 127-263 (1066)
62 PLN02882 aminoacyl-tRNA ligase 99.7 2.6E-14 5.7E-19 172.2 31.9 132 183-350 37-173 (1159)
63 TIGR00396 leuS_bact leucyl-tRN 99.7 1.3E-14 2.7E-19 170.8 27.0 166 398-604 523-725 (842)
64 cd00808 GluRS_core catalytic c 99.6 2E-15 4.4E-20 152.1 14.2 215 191-523 6-233 (239)
65 PRK00390 leuS leucyl-tRNA synt 99.6 8.8E-14 1.9E-18 163.3 29.3 140 415-605 547-687 (805)
66 PRK12410 glutamylglutaminyl-tR 99.6 3.2E-15 6.9E-20 162.0 15.7 138 364-524 165-305 (433)
67 PLN02627 glutamyl-tRNA synthet 99.6 4.1E-15 8.9E-20 163.9 15.3 136 364-524 224-365 (535)
68 PLN02563 aminoacyl-tRNA ligase 99.6 2.9E-13 6.2E-18 160.2 26.7 119 447-604 723-843 (963)
69 PF00133 tRNA-synt_1: tRNA syn 99.6 2.8E-14 6.2E-19 162.8 17.7 133 182-350 21-158 (601)
70 PF05746 DALR_1: DALR anticodo 99.6 2.5E-15 5.5E-20 135.6 6.9 82 530-611 1-82 (119)
71 cd00418 GlxRS_core catalytic c 99.6 1.8E-14 4E-19 144.2 13.2 215 191-523 6-224 (230)
72 COG0495 LeuS Leucyl-tRNA synth 99.5 4.4E-13 9.5E-18 154.2 23.1 114 184-350 34-152 (814)
73 PRK04156 gltX glutamyl-tRNA sy 99.5 3.4E-14 7.3E-19 158.3 13.3 229 183-521 99-400 (567)
74 PF01921 tRNA-synt_1f: tRNA sy 99.5 1.7E-14 3.8E-19 151.8 10.1 258 183-517 22-323 (360)
75 PF00749 tRNA-synt_1c: tRNA sy 99.5 1E-13 2.2E-18 145.9 14.9 238 191-519 6-312 (314)
76 cd09287 GluRS_non_core catalyt 99.5 4.9E-14 1.1E-18 141.7 11.2 167 190-453 5-172 (240)
77 COG1384 LysS Lysyl-tRNA synthe 99.5 2.1E-13 4.6E-18 147.3 13.2 263 184-521 19-323 (521)
78 COG0008 GlnS Glutamyl- and glu 99.5 3.5E-13 7.6E-18 147.7 14.8 138 367-524 184-323 (472)
79 KOG0432 Valyl-tRNA synthetase 99.5 2E-11 4.3E-16 137.6 28.9 154 437-600 583-756 (995)
80 TIGR03838 queuosine_YadB gluta 99.5 3.1E-13 6.7E-18 138.8 13.1 183 192-460 6-241 (272)
81 smart00836 DALR_1 DALR anticod 99.4 9.3E-13 2E-17 119.6 7.7 82 530-611 1-85 (122)
82 PRK05710 glutamyl-Q tRNA(Asp) 99.4 5.1E-12 1.1E-16 131.3 13.4 136 310-460 58-248 (299)
83 PLN03233 putative glutamate-tR 99.3 1.8E-11 3.8E-16 135.2 12.9 185 184-452 10-251 (523)
84 PTZ00402 glutamyl-tRNA synthet 99.3 2.8E-11 6E-16 135.1 13.2 237 183-523 50-352 (601)
85 cd00807 GlnRS_core catalytic c 99.2 3.9E-11 8.5E-16 120.4 9.4 217 191-523 6-228 (238)
86 COG0060 IleS Isoleucyl-tRNA sy 99.2 4.1E-11 8.9E-16 139.3 10.9 162 398-605 558-727 (933)
87 TIGR00463 gltX_arch glutamyl-t 99.2 7.5E-11 1.6E-15 131.6 12.0 234 184-520 92-390 (560)
88 PLN02907 glutamate-tRNA ligase 99.2 8.8E-11 1.9E-15 135.5 12.6 239 184-523 212-512 (722)
89 KOG1247 Methionyl-tRNA synthet 99.2 4.3E-10 9.2E-15 117.9 14.3 332 181-608 11-472 (567)
90 PRK05347 glutaminyl-tRNA synth 99.1 3.4E-10 7.3E-15 125.6 14.0 115 364-520 189-331 (554)
91 KOG1149 Glutamyl-tRNA syntheta 99.1 2.5E-10 5.5E-15 120.3 12.3 135 363-523 211-352 (524)
92 PRK12300 leuS leucyl-tRNA synt 99.1 5E-10 1.1E-14 133.3 16.4 165 392-608 529-696 (897)
93 PTZ00427 isoleucine-tRNA ligas 99.1 3.3E-10 7.1E-15 137.0 13.9 170 398-605 676-854 (1205)
94 TIGR00440 glnS glutaminyl-tRNA 99.0 5.7E-09 1.2E-13 115.7 15.5 113 392-519 196-325 (522)
95 PLN02859 glutamine-tRNA ligase 99.0 3.9E-09 8.4E-14 120.9 13.2 53 392-455 455-507 (788)
96 PRK14703 glutaminyl-tRNA synth 98.9 1.3E-08 2.8E-13 117.7 16.3 58 158-226 12-69 (771)
97 PTZ00437 glutaminyl-tRNA synth 98.8 3.5E-08 7.6E-13 109.7 11.6 40 184-226 50-89 (574)
98 PLN02959 aminoacyl-tRNA ligase 98.7 2E-07 4.3E-12 113.0 14.8 151 398-598 674-831 (1084)
99 PTZ00427 isoleucine-tRNA ligas 98.6 3.3E-07 7.2E-12 111.3 14.9 137 183-355 101-242 (1205)
100 PLN02959 aminoacyl-tRNA ligase 98.5 1.1E-06 2.4E-11 106.5 13.2 167 183-350 44-239 (1084)
101 KOG0435 Leucyl-tRNA synthetase 98.2 7.8E-07 1.7E-11 98.7 4.3 114 183-350 57-175 (876)
102 KOG0433 Isoleucyl-tRNA synthet 98.2 9.6E-06 2.1E-10 91.0 11.1 178 394-606 563-745 (937)
103 PRK12300 leuS leucyl-tRNA synt 98.1 9.5E-06 2.1E-10 97.1 9.5 123 199-350 1-128 (897)
104 COG0060 IleS Isoleucyl-tRNA sy 97.5 0.00014 3.1E-09 85.7 6.4 130 184-350 49-183 (933)
105 PRK13354 tyrosyl-tRNA syntheta 97.3 0.0011 2.3E-08 72.7 10.6 61 391-461 184-244 (410)
106 KOG0434 Isoleucyl-tRNA synthet 97.3 0.002 4.4E-08 72.4 11.6 169 392-605 553-733 (1070)
107 PRK05912 tyrosyl-tRNA syntheta 97.2 0.0013 2.9E-08 72.0 9.8 60 391-460 186-245 (408)
108 PRK08560 tyrosyl-tRNA syntheta 97.1 0.0025 5.4E-08 68.0 10.1 64 392-465 167-233 (329)
109 TIGR00233 trpS tryptophanyl-tR 97.1 0.0049 1.1E-07 65.7 11.9 67 392-460 138-206 (328)
110 PTZ00126 tyrosyl-tRNA syntheta 97.0 0.0064 1.4E-07 66.1 12.6 60 392-460 209-271 (383)
111 PRK12285 tryptophanyl-tRNA syn 97.0 0.0062 1.3E-07 65.8 12.2 59 398-464 206-269 (368)
112 PLN02486 aminoacyl-tRNA ligase 96.9 0.0089 1.9E-07 64.9 12.4 57 400-464 224-283 (383)
113 COG0162 TyrS Tyrosyl-tRNA synt 96.1 0.0097 2.1E-07 64.7 6.2 51 398-456 183-233 (401)
114 TIGR00234 tyrS tyrosyl-tRNA sy 96.0 0.04 8.8E-07 59.9 10.4 55 398-460 180-234 (377)
115 KOG0433 Isoleucyl-tRNA synthet 95.6 0.076 1.7E-06 60.7 10.7 122 195-357 66-194 (937)
116 KOG0434 Isoleucyl-tRNA synthet 95.5 0.039 8.4E-07 62.5 7.8 130 185-350 39-173 (1070)
117 PTZ00348 tyrosyl-tRNA syntheta 95.4 0.087 1.9E-06 61.2 10.8 64 392-464 174-240 (682)
118 KOG0435 Leucyl-tRNA synthetase 94.9 0.16 3.5E-06 57.7 10.6 40 447-515 617-657 (876)
119 KOG1147 Glutamyl-tRNA syntheta 94.4 0.13 2.7E-06 57.0 8.0 41 310-350 253-294 (712)
120 KOG0437 Leucyl-tRNA synthetase 94.4 0.2 4.2E-06 57.5 9.6 171 182-358 42-250 (1080)
121 cd00805 TyrRS_core catalytic c 94.2 0.034 7.5E-07 57.6 3.0 57 398-463 154-210 (269)
122 cd07375 Anticodon_Ia_like Anti 94.1 0.29 6.4E-06 42.7 8.6 75 530-607 10-84 (117)
123 KOG0437 Leucyl-tRNA synthetase 93.9 0.25 5.5E-06 56.6 9.2 61 427-519 693-754 (1080)
124 cd00395 Tyr_Trp_RS_core cataly 93.9 0.059 1.3E-06 56.0 4.1 64 392-464 152-215 (273)
125 PRK12556 tryptophanyl-tRNA syn 93.4 0.059 1.3E-06 57.6 3.3 65 392-460 148-215 (332)
126 COG0180 TrpS Tryptophanyl-tRNA 93.1 0.069 1.5E-06 56.3 3.2 65 400-464 150-216 (314)
127 PF00579 tRNA-synt_1b: tRNA sy 92.4 0.097 2.1E-06 54.8 3.0 67 393-465 149-217 (292)
128 PRK12284 tryptophanyl-tRNA syn 92.2 0.15 3.2E-06 56.1 4.3 65 392-460 147-215 (431)
129 cd00806 TrpRS_core catalytic c 90.4 0.31 6.6E-06 50.9 4.4 66 393-460 137-205 (280)
130 PRK00927 tryptophanyl-tRNA syn 89.3 0.39 8.4E-06 51.4 4.1 71 392-464 137-213 (333)
131 PRK12282 tryptophanyl-tRNA syn 87.0 0.67 1.5E-05 49.6 4.2 63 393-460 142-209 (333)
132 cd07957 Anticodon_Ia_Met Antic 85.5 5.5 0.00012 35.4 8.9 69 534-607 13-81 (129)
133 PRK12283 tryptophanyl-tRNA syn 85.3 0.81 1.7E-05 49.9 3.7 38 190-234 6-44 (398)
134 PRK01233 glyS glycyl-tRNA synt 82.5 6.4 0.00014 46.2 9.7 82 527-610 568-649 (682)
135 cd07958 Anticodon_Ia_Leu_BEm A 81.5 3.9 8.4E-05 35.8 6.0 72 534-608 13-84 (117)
136 TIGR00211 glyS glycyl-tRNA syn 79.8 10 0.00022 44.6 10.1 82 527-610 578-659 (691)
137 cd07959 Anticodon_Ia_Leu_AEc A 79.1 15 0.00032 32.2 9.0 68 535-608 14-82 (117)
138 KOG1148 Glutaminyl-tRNA synthe 77.9 2.3 5E-05 48.0 3.9 59 183-242 246-332 (764)
139 PLN02886 aminoacyl-tRNA ligase 72.5 4.2 9.2E-05 44.4 4.2 38 190-233 50-87 (389)
140 COG0751 GlyS Glycyl-tRNA synth 70.1 22 0.00047 41.5 9.3 82 527-610 577-658 (691)
141 cd00805 TyrRS_core catalytic c 69.7 4.7 0.0001 41.8 3.7 40 190-235 4-44 (269)
142 COG4746 Uncharacterized protei 66.7 15 0.00032 30.5 5.2 70 65-136 2-78 (80)
143 PRK14908 glycyl-tRNA synthetas 65.9 34 0.00074 41.8 10.2 77 527-610 893-969 (1000)
144 PF00579 tRNA-synt_1b: tRNA sy 65.4 6.5 0.00014 41.1 3.8 43 184-233 4-46 (292)
145 cd00806 TrpRS_core catalytic c 61.7 8.3 0.00018 40.3 3.7 39 190-233 3-41 (280)
146 cd07962 Anticodon_Ia_Val Antic 55.7 32 0.00069 31.3 6.1 48 561-608 41-90 (135)
147 cd00395 Tyr_Trp_RS_core cataly 54.6 14 0.00031 38.4 4.0 38 190-233 3-41 (273)
148 PLN02886 aminoacyl-tRNA ligase 46.9 15 0.00032 40.3 2.8 28 392-421 183-210 (389)
149 cd07961 Anticodon_Ia_Ile_ABEc 43.3 56 0.0012 31.4 6.0 45 561-605 46-90 (183)
150 PRK12282 tryptophanyl-tRNA syn 40.2 29 0.00062 37.3 3.7 40 190-235 6-45 (333)
151 PRK00927 tryptophanyl-tRNA syn 39.6 21 0.00046 38.2 2.5 41 190-236 5-45 (333)
152 PRK12284 tryptophanyl-tRNA syn 39.1 30 0.00065 38.4 3.7 40 190-233 6-45 (431)
153 cd07960 Anticodon_Ia_Ile_BEm A 38.4 85 0.0018 30.0 6.4 46 561-606 43-90 (180)
154 PRK12556 tryptophanyl-tRNA syn 37.5 26 0.00057 37.6 2.9 40 190-233 7-46 (332)
155 PF03464 eRF1_2: eRF1 domain 2 36.9 1.2E+02 0.0026 27.7 6.9 75 125-217 56-131 (133)
156 KOG4368 Predicted RNA binding 36.0 26 0.00057 39.6 2.6 50 181-235 123-172 (757)
157 PF00975 Thioesterase: Thioest 31.9 40 0.00087 33.0 3.0 31 201-231 71-101 (229)
158 KOG2623 Tyrosyl-tRNA synthetas 27.5 90 0.002 34.1 4.8 57 396-459 228-285 (467)
159 PF08373 RAP: RAP domain; Int 27.5 46 0.001 25.5 2.0 35 196-230 4-40 (58)
160 cd01134 V_A-ATPase_A V/A-type 24.9 9.4E+02 0.02 26.3 14.4 130 126-271 171-303 (369)
161 KOG2713 Mitochondrial tryptoph 24.7 27 0.00058 36.5 0.2 56 392-454 154-218 (347)
162 TIGR01042 V-ATPase_V1_A V-type 24.6 5.7E+02 0.012 29.7 10.7 83 182-271 289-374 (591)
163 cd02156 nt_trans nucleotidyl t 24.1 40 0.00086 29.3 1.2 15 191-206 4-18 (105)
164 TIGR01043 ATP_syn_A_arch ATP s 23.4 8.5E+02 0.018 28.3 11.8 83 182-271 283-368 (578)
165 COG0180 TrpS Tryptophanyl-tRNA 21.8 53 0.0012 34.9 1.8 39 190-233 9-47 (314)
166 COG1656 Uncharacterized conser 21.7 66 0.0014 30.9 2.2 22 212-233 17-38 (165)
No 1
>PLN02286 arginine-tRNA ligase
Probab=100.00 E-value=8.6e-125 Score=1055.18 Aligned_cols=537 Identities=80% Similarity=1.287 Sum_probs=482.3
Q ss_pred HHHHHHHHhcCCCCCCCccccccc-CCCCcccccchhHHHHHHhcCCCCCCCChHHHHHHHHHhCCCCCCcceeEEecCc
Q 007251 73 KVFDLALKATVPNETDVRPLIAAC-TAKFGDYQCNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPPSEMIESCSVAGPG 151 (611)
Q Consensus 73 ~~i~~a~~~~~~~~~~~~~~v~~~-~~~~GD~~~n~A~~lak~~k~~~~~~~~P~~iA~~l~~~l~~~~~i~~vevagpG 151 (611)
..+.+++...++........++.| +++|||||||+||.|||.++++|++.++|++||++|++.|...+.|++|+|+|||
T Consensus 5 ~~~~~~l~~~~~~~~~~~~~i~~~~~~~~GD~a~n~a~~lak~~~~~~~~~k~P~~iA~~i~~~l~~~~~i~~v~vagpG 84 (576)
T PLN02286 5 KLFEASLRLTVPDEPSVEPLVAACTNPKFGDYQCNNAMGLWSKLKGKGTSFKNPRAVAQAIVKNLPASEMIESTSVAGPG 84 (576)
T ss_pred HHHHHHHHHhcCcccccCeEEecCCCCCCCCcccchHHHHHHHhCccccccCCHHHHHHHHHHhCccccceeeEEEcCCC
Confidence 334444444443112223556656 7899999999999999999989988899999999999999766779999999999
Q ss_pred eeEeecCHHHHHHHHHHHHHcCCCCCCccCCCceEEEEecCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccC
Q 007251 152 FVNVVLSKNWMAKNIQKMLVDGIETWAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVG 231 (611)
Q Consensus 152 fIN~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~kV~Ve~~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~V~r~~yin 231 (611)
||||+|++.++.+.+..++..+..++.+..++++|+||||||||||||||||+|||||||+|||||+++||+|+|+||||
T Consensus 85 fiNf~l~~~~l~~~l~~~~~~~~~~g~~~~~~~~v~VEfsSpNp~kplHvGHlRsaiiGdsLaril~~~G~~V~r~nyin 164 (576)
T PLN02286 85 FVNVRLSASWLAKRIERMLVDGIDTWAPTLPVKRAVVDFSSPNIAKEMHVGHLRSTIIGDTLARMLEFSGVEVLRRNHVG 164 (576)
T ss_pred eEEEEECHHHHHHHHHHHHHcCcccCCCCCCCceEEEEecCCCCCCCCccccccchhhHHHHHHHHHHcCCceEEEEeec
Confidence 99999999999999998887665533333456899999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHhhCCCCCccccchHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHH
Q 007251 232 DWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKE 311 (611)
Q Consensus 232 D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~~~~~~~d~~~~~~a~~~~~~le~gd~e~~~~w~~~~~~~~~~ 311 (611)
|||+||++++.++...+|+.+.+.+.+|.++..+|+++++.++++|++++++++.+.+||+||+++.++|++++++++.+
T Consensus 165 D~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~l~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~lw~~~~~~~~~~ 244 (576)
T PLN02286 165 DWGTQFGMLIEHLFEKFPNWESVSDQAIGDLQEFYKAAKKRFDEDEEFKARAQQAVVRLQGGDPEYRAAWAKICEISRRE 244 (576)
T ss_pred chHHHHHHHHHHHHHhcCcccccCcccHHHHHHHHHHhhhhccCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 99999999998887777765445667899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCeeeecccccccCcHHHHHHHHHhCCCceeecccEEEeccCCCCCeEEEccCCcccccCcchhHHHhhhhc
Q 007251 312 FDKVYKRLRVDLEEKGESFYNPYIPGVIDELSKQGLVEESQGARVIFIEGVNIPLIIVKSDGGFNYASTDLAALWYRLNE 391 (611)
Q Consensus 312 ~~~~~~~LgV~f~~~~Es~y~~~v~~vi~~L~~~G~~~e~dGa~~~~~~g~~~d~Vl~ksDG~~tY~t~DiA~~~~r~~~ 391 (611)
|+++|++|||+||..+||+|.+.++++++.|+++|++|++|||+|+++++.++|+||+||||++||+|+|||||+||++.
T Consensus 245 ~~~~y~~l~V~fd~~ges~y~~~~~~vi~~L~~~g~~~e~dGa~~v~l~~~~~~~vl~ksDGt~tY~t~DIA~~~~k~~~ 324 (576)
T PLN02286 245 FEKVYQRLRVELEEKGESFYNPYIPGVIEELESKGLVVESDGARVIFVEGFDIPLIVVKSDGGFNYASTDLAALWYRLNE 324 (576)
T ss_pred HHHHHHHhCCeeeecCchhhhhhHHHHHHHHHHCCCEEeeCCceEeeccCCCCceEEEECCCchhhHHHHHHHHHHHHhc
Confidence 99999999999977789999998999999999999999999999999887667999999999999999999999999987
Q ss_pred cCCCeEEEEEeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEeeeeEEcCCCceeeeccCCcccHHHHHHHHHHHHHH
Q 007251 392 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKA 471 (611)
Q Consensus 392 ~~~d~iIyV~g~dq~~hf~~l~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~dG~kmSkR~G~~v~l~dLldea~~~a~~ 471 (611)
+++|++|||||++|++||+||+++++++||.++ ++..++.|+.||||++.+|+|||||+|++|+|+|||++++.+|.+
T Consensus 325 ~~~d~~IyVvg~~q~~hf~~v~~~l~~lG~~~~--~~~~~l~h~~~g~V~~~~g~kmStR~G~~v~L~dlldea~~~a~~ 402 (576)
T PLN02286 325 EKAEWIIYVTDVGQQQHFDMVFKAAKRAGWLPE--DTYPRLEHVGFGLVLGEDGKRFRTRSGEVVRLVDLLDEAKSRSKA 402 (576)
T ss_pred cCCCEEEEEEeCcHHHHHHHHHHHHHHcCCCcc--ccCCceEEEeeccEECCCCCcccCCCCCeeEHHHHHHHHHHHHHH
Confidence 899999999999999999999999999998521 123579999999998888999999999999999999999999999
Q ss_pred HHHHhcCCCCCCHHHHHHHHhhcCcchhhhhhccCCCCCcccccccccccccCChHHHHHHHHHHHHHHHHHhCCChhhh
Q 007251 472 VLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHARICSIIRKSGKDIEEL 551 (611)
Q Consensus 472 ~~~~r~~~~~~~~~e~~~~a~~vg~~avRy~~L~~~~~~~~~Fd~d~~~~~~gnt~~ylqYa~aRi~SIlrKa~~~~~~~ 551 (611)
.+.++++.+++++++.+++|+.+|++|+||++|++++.++++||||++++++|||+|||||||||+||||||++......
T Consensus 403 ~~~~~~~~~~~~~~~~~~~a~~vg~~Airy~~L~~~~~~~~~Fd~d~~l~~~g~t~pYlQYahAR~~SIlrKa~~~~~~~ 482 (576)
T PLN02286 403 ALIERGKDSEWTPEELEQAAEAVGYGAVKYADLKNNRLTNYTFSFDQMLDLKGNTAVYLLYAHARICSIIRKSGKDIDEL 482 (576)
T ss_pred HHHhccCccccchhhHHHHHHHhhhhhhhhhhhhcCCCCCCccCHHHHHhhcCCChHHHHHHHHHHHHHHHhccCccccc
Confidence 99998777789999999999999999999999999999999999999999999999999999999999999996432111
Q ss_pred hhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhchhhcccCC
Q 007251 552 KKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNCQVQ 611 (611)
Q Consensus 552 ~~~~~~~l~~~~e~~L~~~l~~fp~~v~~a~~~~~P~~l~~yL~~La~~fn~fY~~~~Vl 611 (611)
.......+.++.|++|+++|++||++|.+|+++++||.||+||++||+.||+||++||||
T Consensus 483 ~~~~~~~l~~~~E~~L~~~l~~fp~vv~~a~~~~~P~~l~~Yl~~LA~~F~~fY~~~~Vl 542 (576)
T PLN02286 483 KKTGKIVLDHPDERALGLHLLQFPEVVEEACTDLLPNRLCEYLYNLSEKFTKFYSNCKVN 542 (576)
T ss_pred cccccccCCCHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhcCccC
Confidence 111123467899999999999999999999999999999999999999999999999996
No 2
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.8e-124 Score=1037.89 Aligned_cols=525 Identities=36% Similarity=0.588 Sum_probs=463.3
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCccccccc-CCCCcccccchhHHHHHHhcCCCCCCCChHHHHHHHHHhCCCCCCccee
Q 007251 67 VKRELEKVFDLALKATVPNETDVRPLIAAC-TAKFGDYQCNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPPSEMIESC 145 (611)
Q Consensus 67 ~~~~~~~~i~~a~~~~~~~~~~~~~~v~~~-~~~~GD~~~n~A~~lak~~k~~~~~~~~P~~iA~~l~~~l~~~~~i~~v 145 (611)
+++.+++.|.+++.+.........+.+++| +++|||||||+||.|||.++ +||++||++|+++|+..+.|++|
T Consensus 3 i~~~l~~~i~~~l~~~~~~~~~~~~~ve~~~~~~~GD~a~n~a~~laK~~~------~~P~eiA~~i~~~l~~~~~~~~v 76 (577)
T COG0018 3 IKQLLKEKIAEALSAAGLDVEEIEILVEPPKDPEHGDFATNIAFQLAKKLG------KNPREIAEEIAEKLDTDEIIEKV 76 (577)
T ss_pred HHHHHHHHHHHHHHHhhccccccccceecCCCCCcccccchHHHHHhhhcC------CCHHHHHHHHHHhccccCcEeEE
Confidence 344455555555554431112345667766 78999999999999999999 99999999999999887789999
Q ss_pred EEecCceeEeecCHHHHHHHHHHHHHcCCC-C-CCccCCCceEEEEecCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCe
Q 007251 146 SVAGPGFVNVVLSKNWMAKNIQKMLVDGIE-T-WAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVE 223 (611)
Q Consensus 146 evagpGfIN~~l~~~~~~~~~~~~l~~~~~-~-~~~~~~~~kV~Ve~~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~ 223 (611)
+++|||||||+|++.++.+.+.+++.++.. + ....++|++|+||||||||||||||||+|||||||+|||+|+++||+
T Consensus 77 eiaGpgfINf~l~~~~~~~~~~~~l~~~~~~~G~~~~~~~~kV~iE~sSaNptkplHiGHlR~aiiGDsLaril~~~Gy~ 156 (577)
T COG0018 77 EIAGPGFINFFLSPEFLAELLLEILEKGDDRYGRSKLGKGKKVVIEYSSANPTGPLHIGHLRNAIIGDSLARILEFLGYD 156 (577)
T ss_pred EEcCCCEEEEEECHHHHHHHHHHHHHhcccccCccccCCCCEEEEEEeCCCCCCCcccchhhhhHHHHHHHHHHHHcCCC
Confidence 999999999999999999999999976444 3 44457899999999999999999999999999999999999999999
Q ss_pred EEEEeccCCchhHHHHHHHHHHhhCCCCCccccchHHHHHHHHHHHhcccCCChHHH-HHHHHHHHHHccCChHHHHHHH
Q 007251 224 VLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFK-ERAQQAVVRLQSGEPKYHEAWA 302 (611)
Q Consensus 224 V~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~~~~~~~d~~~~-~~a~~~~~~le~gd~e~~~~w~ 302 (611)
|+|+|||||||+||++|+.++.....+......+++..+.++|++.++.++++|+.. +++++.+.++|.||+++ ++|+
T Consensus 157 V~r~~yvnD~G~Q~~~l~~~~~~~~~e~~~~~~~~~~~lg~~y~~i~~~~~~~~~~~~~~~~~~~~k~e~~d~~~-~lw~ 235 (577)
T COG0018 157 VTRENYVNDWGTQIGMLALSYEKRGREALGLTPEPDGYLGEYYVKIAKDLEEDPGNDEEEAREEVEKLESGDEEA-ELWR 235 (577)
T ss_pred eeEEeeECcHHHHHHHHHHHHHHhccccccCCCCcchHHHHHHHHHHHHHHhCcccchHHHHHHHHHHhcCChHH-HHHH
Confidence 999999999999999999888765544221123456777788999998887777633 78999999999999999 9999
Q ss_pred HHHHHHHHHHHHHHHhcCCeee-e--cccccccCcHHHHHHHHHhCCCceeecccEEEecc-----CCCCCeEEEccCCc
Q 007251 303 QICEISRKEFDKVYKRLRVDLE-E--KGESFYNPYIPGVIDELSKQGLVEESQGARVIFIE-----GVNIPLIIVKSDGG 374 (611)
Q Consensus 303 ~~~~~~~~~~~~~~~~LgV~f~-~--~~Es~y~~~v~~vi~~L~~~G~~~e~dGa~~~~~~-----g~~~d~Vl~ksDG~ 374 (611)
++++.++++|+++|++|||+|| | +||++|++.+.++++.|+++|++|+++||+|++++ |+++|+||+|||||
T Consensus 236 ~~v~~~l~~~k~~l~~l~V~fD~~~~E~e~~~~~~~~~vv~~L~~~~~~~e~~GA~~vdl~~~~~~gd~~~~vl~KSDGt 315 (577)
T COG0018 236 KFVDLSLEGIKETLDRLGVKFDVYDSEGESFYNGKVEKVVEDLEEKGLLYEDDGALVVDLLKFKKFGDDKDRVLQKSDGT 315 (577)
T ss_pred HHHHHHHHHHHHHHHHhCcccceeeccchhhhcccHHHHHHHHHhcCCEeeeCCeEEEehhhhhhcCCCCCeEEEEcCCC
Confidence 9999999999999999999995 4 47899999999999999999999999999998874 78899999999999
Q ss_pred ccccCcchhHHHhhhhccCCCeEEEEEeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEeeeeEEcCCCceeeeccCC
Q 007251 375 FNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSE 454 (611)
Q Consensus 375 ~tY~t~DiA~~~~r~~~~~~d~iIyV~g~dq~~hf~~l~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~dG~kmSkR~G~ 454 (611)
++|+|+|||||.||++ +++|++|||||+||++||+|++.+++++||.++ ...+.|++||+|++.+|+|||||.|+
T Consensus 316 ~lY~t~DIAy~~~K~~-~~~d~~IyV~gadq~~~~~ql~~~l~~~g~~~~----~~~~~h~~~~l~~~~~g~kmStR~G~ 390 (577)
T COG0018 316 YLYFTRDIAYHLYKFE-RGFDKLIYVLGADQHGHFKQLKAVLELLGYGPD----KEVLLHQGVGLVRGGEGVKMSTRAGN 390 (577)
T ss_pred eeeehhHHHHHHHHHh-cCCCEEEEEeCCcchhHHHHHHHHHHHhcCCCc----cceEEEEEEeeeECCCCccccccCCc
Confidence 9999999999999995 999999999999999999999999999999642 25789999999999999999999999
Q ss_pred cccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhcCcchhhhhhccCCCCCcccccccccccccCChHHHHHHHH
Q 007251 455 VVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAH 534 (611)
Q Consensus 455 ~v~l~dLldea~~~a~~~~~~r~~~~~~~~~e~~~~a~~vg~~avRy~~L~~~~~~~~~Fd~d~~~~~~gnt~~ylqYa~ 534 (611)
+|+++|++|++.+||.+.+.++ +..+ +++|+.+|+||+||++|++++.++++||||++++++|||+|||||||
T Consensus 391 ~vtl~dllde~~era~~~~~~~-~~~~------~~iA~~vgi~Avry~~l~~~~~~~~~Fd~d~~lsfegNt~pYvQYA~ 463 (577)
T COG0018 391 VVTLDDLLDEAGERAPEEMEEK-EEKN------EEIAEVVGIDAVRYADLSRSRDKDYVFDWDKALSFEGNTAPYVQYAH 463 (577)
T ss_pred eEEHHHHHHHHHHHhhhHhhhh-hhhh------HHHHHHhhhhhHHHHHHhcCCCCCcEeeHHHHHhccCCCchhHHHHH
Confidence 9999999999999999999876 4322 89999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCChhhhh-hcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhchhhcccCC
Q 007251 535 ARICSIIRKSGKDIEELK-KTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNCQVQ 611 (611)
Q Consensus 535 aRi~SIlrKa~~~~~~~~-~~~~~~l~~~~e~~L~~~l~~fp~~v~~a~~~~~P~~l~~yL~~La~~fn~fY~~~~Vl 611 (611)
||+||||||++....... ..+ ..+.++.|++|+++|++||++|++|+++++||+||.||++||+.||+||++||||
T Consensus 464 ARi~SIlrka~e~~~~~~~~~~-~~l~~~~E~~L~~~L~~fp~vl~~aa~~~~Ph~la~YL~~LA~~Fn~fY~~~~Vl 540 (577)
T COG0018 464 ARICSILRKAGEDELDLSTEAD-ALLTELEERELVKKLLEFPEVLEEAAEELEPHRLANYLYDLAGSFNSFYNACPVL 540 (577)
T ss_pred HHHHHHHHhccccccccccccc-hhccChHHHHHHHHHHHhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhCCcC
Confidence 999999999975321111 111 2467888999999999999999999999999999999999999999999999997
No 3
>KOG4426 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.8e-123 Score=953.65 Aligned_cols=562 Identities=60% Similarity=1.022 Sum_probs=524.1
Q ss_pred hhhhhhccccccccccchhhhHHhHHHHHHHHHHHHHHhcCCCCCCCccccccc-CCCCcccccchhHHHHHHhcCCCCC
Q 007251 43 RLALAATKTRSITSMATEEENTGNVKRELEKVFDLALKATVPNETDVRPLIAAC-TAKFGDYQCNNAMGLWSKIKGKGTE 121 (611)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~~~~~~~~~v~~~-~~~~GD~~~n~A~~lak~~k~~~~~ 121 (611)
+.|+..-..+..+..+..++.+.+++.++.+++..|++.++|+..++++++.++ +++|||||||.||.|++.+|+++.+
T Consensus 49 k~r~sil~KSia~~~a~~~~~~~ni~~~L~~lF~~aik~a~Pd~~~vp~liaps~~~kFGDYQCNnAMgl~~~lK~kg~~ 128 (656)
T KOG4426|consen 49 KYRLSILEKSIAEEAAKNEKFTSNIFRRLQSLFDVAIKLAFPDLPDVPLLIAPSPNAKFGDYQCNNAMGLSSKLKGKGIN 128 (656)
T ss_pred HHHHHHHHHHHHHHhhcCccccccHHHHHHHHHHHHHHHhCCCCCCCCceeccCcccccccccccchhhHHHHHhhcCCc
Confidence 444444444444566666778889999999999999999999766778888765 7899999999999999999999988
Q ss_pred CCChHHHHHHHHHhCCCCCCcceeEEecCceeEeecCHHHHHHHHHHHHHcCCCCCCccCCCceEEEEecCCCCCCCCcc
Q 007251 122 FKGPQPVGQAIMKNLPPSEMIESCSVAGPGFVNVVLSKNWMAKNIQKMLVDGIETWAPKLRVKKAVVDFSSPNIAKEMHV 201 (611)
Q Consensus 122 ~~~P~~iA~~l~~~l~~~~~i~~vevagpGfIN~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~kV~Ve~~SpNp~kplHv 201 (611)
+ +|++||++|..+++.++.|++++|+||||||++|+.+|+...+..++.+|-. .|....++|+|||||||++|.|||
T Consensus 129 ~-~P~~va~~l~~~lP~se~vEk~~iagpGFiNv~Ls~d~~~~~i~nll~~GV~--~P~l~~KrvlVDFSSPNIAKeMHV 205 (656)
T KOG4426|consen 129 K-RPRDVAQELQKHLPTSEMVEKCEIAGPGFINVFLSKDYMSKQISNLLVNGVK--LPTLSVKRVLVDFSSPNIAKEMHV 205 (656)
T ss_pred c-CcHHHHHHHHhhCCchhhhhhhcccCCceEEEEechHHHHHHHHHHHHcCCC--CcccceeeEEEecCCCcHHHHhhh
Confidence 5 5999999999999998999999999999999999999999999999987755 444556999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCccccchHHHHHHHHHHHhcccCCChHHHH
Q 007251 202 GHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFKE 281 (611)
Q Consensus 202 GHlRsaiiGDsLariL~~~Gy~V~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~~~~~~~d~~~~~ 281 (611)
||+|||||||+|||+|++.|++|.|.|||||||+|||||+++++++||+.... .++|.+|+-+|++.+++|+.|++|++
T Consensus 206 GHLRSTIIGdsl~RllE~~~~dVlR~NHvGDWGTQFGMLIahL~dkFPd~l~v-sp~IgDLQvFYkeSKkrFD~deeFKk 284 (656)
T KOG4426|consen 206 GHLRSTIIGDSLCRLLEFSGVDVLRRNHVGDWGTQFGMLIAHLFDKFPDYLSV-SPPIGDLQVFYKESKKRFDEDEEFKK 284 (656)
T ss_pred hhhhhhhHhHHHHHHHHhcCcceEeeccccchHHHHHHHHHHHHHhCCchhcc-CCCchhHHHHHHHHHhccCcCHHHHH
Confidence 99999999999999999999999999999999999999999999999986653 35999999999999999999999999
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHhcCCeeeecccccccCcHHHHHHHHHhCCCceeecccEEEeccC
Q 007251 282 RAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGESFYNPYIPGVIDELSKQGLVEESQGARVIFIEG 361 (611)
Q Consensus 282 ~a~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~LgV~f~~~~Es~y~~~v~~vi~~L~~~G~~~e~dGa~~~~~~g 361 (611)
+|.+.+++||.|||..++.|..+|+.|+++|+++|++|+|+....|||||++.+.+++++|+.+|++.++||+-+++.+|
T Consensus 285 rAyq~VV~LQggdp~~~kAW~~ICdvSr~ef~kvY~rLdi~l~e~GESFYq~~m~~vveel~~kglvee~~Gr~i~f~~g 364 (656)
T KOG4426|consen 285 RAYQAVVRLQGGDPDIRKAWALICDVSRKEFQKVYNRLDISLKERGESFYQDRMAEVVEELKSKGLVEEDDGRRIMFPEG 364 (656)
T ss_pred HHHHHeeecccCCChHHHHHHHHHHhhHHHHHHHHHHhcchHhhcchhhhhhHHHHHHHHHhcCCceeecCCceEeccCC
Confidence 99999999999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred CCCCeEEEccCCcccccCcchhHHHhhhhccCCCeEEEEEeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEeeeeEE
Q 007251 362 VNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVL 441 (611)
Q Consensus 362 ~~~d~Vl~ksDG~~tY~t~DiA~~~~r~~~~~~d~iIyV~g~dq~~hf~~l~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~ 441 (611)
.+.|..++||||++||.|+|+|+.+||+.+..+||+|||+|.+|+.||..+|++++..||.. +..+++.||+||+|+
T Consensus 365 ~~IPLtvVKSDGGftYdtsDlaAl~yRl~EEkadwiIYVvD~GQs~Hf~t~fkAar~~gwld---~~~~RV~HvgFGlVL 441 (656)
T KOG4426|consen 365 CDIPLTVVKSDGGFTYDTSDLAALKYRLNEEKADWIIYVVDSGQSQHFNTIFKAARKAGWLD---PTYPRVEHVGFGLVL 441 (656)
T ss_pred CCcceEEEecCCCcccccchHHHHHHHHHHhhcCeEEEEeeCchhHHHHHHHHHHHHcCccC---CCccceeeeeeeeEE
Confidence 99999999999999999999999999999999999999999999999999999999999973 667899999999999
Q ss_pred cCCCceeeeccCCcccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhcCcchhhhhhccCCCCCccccccccccc
Q 007251 442 GEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLN 521 (611)
Q Consensus 442 ~~dG~kmSkR~G~~v~l~dLldea~~~a~~~~~~r~~~~~~~~~e~~~~a~~vg~~avRy~~L~~~~~~~~~Fd~d~~~~ 521 (611)
|.||+|+.||.|.+|.|-|||+|++.|+++.+.+||++..|++||+...++.+|.++++|.+|++++.++|.|++|+|++
T Consensus 442 GeD~KkFkTRsgetVrL~DLLdEg~kRs~~~Liergrdk~~tpeeL~~a~eavayGciKYaDL~hnR~~dY~FSFDkML~ 521 (656)
T KOG4426|consen 442 GEDKKKFKTRSGETVRLLDLLDEGKKRSKEKLIERGRDKVLTPEELDAAQEAVAYGCIKYADLSHNRITDYIFSFDKMLE 521 (656)
T ss_pred ccCcccccccccceeeHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhcchhHhhhccccccceeeeHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCChHHHHHHHHHHHHHHHHHhCCC----hhhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Q 007251 522 DKGNTAVYLLYAHARICSIIRKSGKD----IEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNL 597 (611)
Q Consensus 522 ~~gnt~~ylqYa~aRi~SIlrKa~~~----~~~~~~~~~~~l~~~~e~~L~~~l~~fp~~v~~a~~~~~P~~l~~yL~~L 597 (611)
-.|||++|+.|||+|||||.||++.+ +..+.......|+|+.||+|.++|.+|++.|+++.+++-||.+|+|+|+|
T Consensus 522 DrGnTAvYLLYa~tRIcSI~rksg~d~~~l~~~lkkT~ki~LDH~~E~kLg~~lLkf~e~v~~~~~~L~lh~lC~y~y~l 601 (656)
T KOG4426|consen 522 DRGNTAVYLLYAYTRICSIARKSGKDNVDLIKELKKTGKIALDHEKEWKLGKHLLKFAEIVEKALDSLFLHVLCDYLYEL 601 (656)
T ss_pred ccCcceehhHHHHHHHHHHHHHcCCchhhHHHHHHhcCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999876 22233333456889999999999999999999999999999999999999
Q ss_pred HHHHhchhhcccCC
Q 007251 598 SEYFTRFYSNCQVQ 611 (611)
Q Consensus 598 a~~fn~fY~~~~Vl 611 (611)
|..|+.||++|.|.
T Consensus 602 ~t~Ft~FY~~Cyv~ 615 (656)
T KOG4426|consen 602 ATLFTEFYDSCYVI 615 (656)
T ss_pred HHHHHHHhhccEEe
Confidence 99999999999873
No 4
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2.3e-115 Score=978.16 Aligned_cols=520 Identities=33% Similarity=0.534 Sum_probs=459.0
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCccccccc-CCCCcccccchhHHHHHHhcCCCCCCCChHHHHHHHHHhCCCCCCccee
Q 007251 67 VKRELEKVFDLALKATVPNETDVRPLIAAC-TAKFGDYQCNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPPSEMIESC 145 (611)
Q Consensus 67 ~~~~~~~~i~~a~~~~~~~~~~~~~~v~~~-~~~~GD~~~n~A~~lak~~k~~~~~~~~P~~iA~~l~~~l~~~~~i~~v 145 (611)
+++.+++.|.+++....+.. ...+.+++| +++||||||| +|.|||.++ ++|++||++|++.|.. +.|++|
T Consensus 3 ~~~~i~~~l~~~l~~~~~~~-~~~~~i~~~~~~~~GD~~~~-~~~lak~~~------~~P~~iA~~i~~~l~~-~~i~~v 73 (562)
T PRK12451 3 YKTQFAESLSNIFTNELTQQ-QILDLIETPKQDEFGDAAFP-CFSLAKQYK------KAPAIIAKEVAEKLSD-PFFTKV 73 (562)
T ss_pred HHHHHHHHHHHHHHhhcccc-ccceeeecCCCCCCCcccch-HHHHHHHcC------CCHHHHHHHHHHhccc-ccccee
Confidence 45566777777776433211 112445655 7899999999 699999999 9999999999999965 368999
Q ss_pred EEecCceeEeecCHHHHHHHH-HHHHHcCCCCCC-ccCCCceEEEEecCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCe
Q 007251 146 SVAGPGFVNVVLSKNWMAKNI-QKMLVDGIETWA-PKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVE 223 (611)
Q Consensus 146 evagpGfIN~~l~~~~~~~~~-~~~l~~~~~~~~-~~~~~~kV~Ve~~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~ 223 (611)
+++|| ||||+|+++++.+.+ ..++..+..++. +.+++++|+||||||||||||||||+|||||||+|||+|+++||+
T Consensus 74 e~~g~-fiN~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~vE~sSpNp~kplHvGH~R~aiiGd~l~ril~~~G~~ 152 (562)
T PRK12451 74 EAVGP-YVNVFFNRETVSDAVLKTILAEKEEYGQNHFGCEKTVVIDYSSPNIAKPFSMGHLRSTMIGNALKHIAEKCGYE 152 (562)
T ss_pred EeeCC-EEEEEECHHHHHHHHHHHHHhhHhhcCCCccCCCCEEEEEecCCCCCCCcccchhhhHHHHHHHHHHHHHCCCC
Confidence 99996 999999999997775 467665554322 224578999999999999999999999999999999999999999
Q ss_pred EEEEeccCCchhHHHHHHHHHHhhCCCCCccccchHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHH
Q 007251 224 VLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQ 303 (611)
Q Consensus 224 V~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~~~~~~~d~~~~~~a~~~~~~le~gd~e~~~~w~~ 303 (611)
|+|+|||||||+||++++.++ .++++....++.++.++..+|+++++.++++|++++++++.+.+||+||+++.++|+.
T Consensus 153 V~r~nyinD~G~Q~~~l~~~~-~~~~~~~~~~~~~~~~l~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~ 231 (562)
T PRK12451 153 VVGINYIGDWGTQFGKLITAY-KKWGNEAVVKEDPIRELFKLYVQFHEEVKDDEELEEEGRAWFKKLEEGDEEAVELWNW 231 (562)
T ss_pred eEEEeeecCchHHHHHHHHHH-HHhCCccccccCchHHHHHHHHHHHHhhccChhHHHHHHHHHHHhhCCCHHHHHHHHH
Confidence 999999999999999999776 4455433335568999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCeeeec-ccccccCcHHHHHHHHHhCCCceeecccEEEeccCC-CCCeEEEccCCcccccCcc
Q 007251 304 ICEISRKEFDKVYKRLRVDLEEK-GESFYNPYIPGVIDELSKQGLVEESQGARVIFIEGV-NIPLIIVKSDGGFNYASTD 381 (611)
Q Consensus 304 ~~~~~~~~~~~~~~~LgV~f~~~-~Es~y~~~v~~vi~~L~~~G~~~e~dGa~~~~~~g~-~~d~Vl~ksDG~~tY~t~D 381 (611)
++++++++|+++|++|||+||++ +||+|.+.+++++++|+++|++|++|||+|+++++. ++|+||+||||++||+|+|
T Consensus 232 ~~~~~l~~~~~~~~~l~V~fD~~~~es~~~~~~~~v~~~L~~~g~~~e~dGa~~~~~~~~g~~~~vl~ksDGt~~Y~t~D 311 (562)
T PRK12451 232 FRHESLKEFSRIYELLGVEFTNFQGEAFYNDLMEDFIGILEEHDLLEESEGALVVNLEEEGMPPCLIRKSDGATIYATRD 311 (562)
T ss_pred HHHHHHHHHHHHHHHcCCCceeecchHhhhhhHHHHHHHHHHCCCEEecCCeEEEEecccCCCceEEEeCCCccccchhH
Confidence 99999999999999999999764 789999889999999999999999999999998743 2799999999999999999
Q ss_pred hhHHHhhhhccCCCeEEEEEeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEeeeeEEcCCCceeeeccCCcccHHHH
Q 007251 382 LAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDL 461 (611)
Q Consensus 382 iA~~~~r~~~~~~d~iIyV~g~dq~~hf~~l~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~dG~kmSkR~G~~v~l~dL 461 (611)
||||.||++.+++|++|||||+||++||+|++++++++||. ++.++.|+.||+|++ +|+|||||+|++|+|+||
T Consensus 312 iA~~~~k~~~~~~d~~IyV~g~dq~~h~~~l~~~~~~lg~~-----~~~~l~h~~~g~V~~-~g~kmStR~G~~v~l~dL 385 (562)
T PRK12451 312 LTAALYRQNTFGFDKALYVVGPEQSLHFNQFFTVLKKLGYT-----WVDGMEHVPFGLILK-DGKKMSTRKGRVVLLEEV 385 (562)
T ss_pred HHHHHHHhhccCCCEEEEEeCCcHHHHHHHHHHHHHHcCCC-----cccCeEEEeeeeEec-CCCCCcCCCCCeeEHHHH
Confidence 99999999878999999999999999999999999999994 235799999999985 677999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhcCcchhhhhhccCCCCCcccccccccccccCChHHHHHHHHHHHHHHH
Q 007251 462 LDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHARICSII 541 (611)
Q Consensus 462 ldea~~~a~~~~~~r~~~~~~~~~e~~~~a~~vg~~avRy~~L~~~~~~~~~Fd~d~~~~~~gnt~~ylqYa~aRi~SIl 541 (611)
|++++.+|.+.+.+|++. + ++.+++|+.+|++|+||++|++++.++++||||++++++|||+|||||||||+|||+
T Consensus 386 ldea~~~a~~~~~~~~~~--l--~~~~~~a~~vg~~Airy~~l~~~~~~~~~Fd~d~~l~~~g~t~pYiQYa~AR~~SIl 461 (562)
T PRK12451 386 LEEAIELAKQNIEEKNPN--L--KQKEEVAKQVGVGAVIFHDLKNERMHNIEFSLENMLKFEGETGPYVQYTHARACSIL 461 (562)
T ss_pred HHHHHHHHHHHHHhhccc--c--ccHHHHHHHhccceeeeHHhhcCCCCCceECHHHHhCcCCCccHHHHHHHHHHHHHH
Confidence 999999999999988653 4 346789999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhchhhcccCC
Q 007251 542 RKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNCQVQ 611 (611)
Q Consensus 542 rKa~~~~~~~~~~~~~~l~~~~e~~L~~~l~~fp~~v~~a~~~~~P~~l~~yL~~La~~fn~fY~~~~Vl 611 (611)
||++.+.. ..+ ..+.++.|++|+..+..||+++.+++++++||.+|+|+++||..||+||+.|+||
T Consensus 462 rka~~~~~---~~~-~~l~~~~E~~Ll~~L~~~~~~v~~a~e~~ep~~~~~yl~~LA~~fN~fy~~~~Vl 527 (562)
T PRK12451 462 RKESVEFE---TCT-FALKDDYSWSVVKLLNKFPQVIEAAFNKNEPSVISKYVLDVAQSFNKYYGNVRIL 527 (562)
T ss_pred HhcCCCcc---ccc-cCCCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 99863221 111 2366899999999999999999999999999999999999999999999999997
No 5
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=100.00 E-value=3.6e-107 Score=914.67 Aligned_cols=518 Identities=36% Similarity=0.564 Sum_probs=450.7
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCccccccc-CCCCcccccchhHHHHHHhcCCCCCCCChHHHHHHHHHhCCCCCCcceeE
Q 007251 68 KRELEKVFDLALKATVPNETDVRPLIAAC-TAKFGDYQCNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPPSEMIESCS 146 (611)
Q Consensus 68 ~~~~~~~i~~a~~~~~~~~~~~~~~v~~~-~~~~GD~~~n~A~~lak~~k~~~~~~~~P~~iA~~l~~~l~~~~~i~~ve 146 (611)
++.+++.|.+++....... ...+.+++| ++.|||||||+||.|||.++ ++|++||++|++.|...+.|++|+
T Consensus 2 ~~~i~~~~~~~l~~~~~~~-~~~~~i~~~~~~~~GD~~~~~a~~lak~~~------~~P~~iA~~i~~~l~~~~~i~~ve 74 (566)
T TIGR00456 2 KTLLKDEISAALLKAGLSK-ESEILLEETPNPEFGDYASNIAFPLAKVLK------KNPRAIAEEIVLKLKTGEIIEKVE 74 (566)
T ss_pred hHHHHHHHHHHHHhccccc-ccceeeecCCCCCCCccccHHHHHHHHHcC------CCHHHHHHHHHHhCCCcCcEeEEE
Confidence 3456666666665432111 112445655 78999999999999999999 999999999999997667899999
Q ss_pred EecCceeEeecCHHHHHHHH-HHHHHcCCCCC-CccCCCceEEEEecCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCeE
Q 007251 147 VAGPGFVNVVLSKNWMAKNI-QKMLVDGIETW-APKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEV 224 (611)
Q Consensus 147 vagpGfIN~~l~~~~~~~~~-~~~l~~~~~~~-~~~~~~~kV~Ve~~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~V 224 (611)
++|| ||||+|+++++.+.+ ..++..+..++ .+.+ +++|+||||||||+|||||||+||+++||+|+|+|+++||+|
T Consensus 75 ~~gp-fiN~~l~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~v~ve~~spn~~~~~hiGh~r~~~~gd~l~r~~~~~g~~v 152 (566)
T TIGR00456 75 AAGP-FINFFLSPQKLLERLIQKILTQKEDYGSKKLK-NKKIIIEFSSANPAGPLHIGHLRNAIIGDSLARILEFLGYDV 152 (566)
T ss_pred EeCC-EEEEEEcHHHHHHHHHHHHHhcccccCCCCCC-CCeEEEEecCCCCCCCCchhhhHHHHHHHHHHHHHHHCCCCe
Confidence 9998 999999998777774 46766555432 2333 789999999999999999999999999999999999999999
Q ss_pred EEEeccCCchhHHHHHHHHHHhhCCCCC-ccccchHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHH
Q 007251 225 LRRNHVGDWGTQFGMLIEYLFEKFPNSE-DANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQ 303 (611)
Q Consensus 225 ~r~~yinD~G~Q~~~l~~~~~~~~~~~~-~~~~~~i~~l~~~y~~~~~~~~~d~~~~~~a~~~~~~le~gd~e~~~~w~~ 303 (611)
.|+|||||||+||++++.++.....+.. .....++.++...|+++++.++.++++++++++.+.+||+||+++.++|+.
T Consensus 153 ~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~~d~~~~~~w~~ 232 (566)
T TIGR00456 153 IREYYVNDWGRQFGLLALGVEKFGNEKLNEAVKKPDHGLEGFYVEINKRLEENEELEEEARELFVKLESGDEEAIKLWKR 232 (566)
T ss_pred eEEeeecchHHHHHHHHHHHHHhCCccccCcccCChHHHHHHHHHHHHHHhhCccHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 9999999999999999988754433211 123456777888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCeee-ec--ccccccCcHHHHHHHHHhCCCceeecccEEEecc--CCC-CCeEEEccCCcccc
Q 007251 304 ICEISRKEFDKVYKRLRVDLE-EK--GESFYNPYIPGVIDELSKQGLVEESQGARVIFIE--GVN-IPLIIVKSDGGFNY 377 (611)
Q Consensus 304 ~~~~~~~~~~~~~~~LgV~f~-~~--~Es~y~~~v~~vi~~L~~~G~~~e~dGa~~~~~~--g~~-~d~Vl~ksDG~~tY 377 (611)
++++++++|+++|++|||+|| |+ +|++|.+.++++++.|+++|++|++ ||+|++++ |++ +|+||+||||++||
T Consensus 233 ~~~~~l~~~~~~~~~l~V~fD~~~~E~e~~~~~~~~~v~~~L~~~g~~~~~-Ga~~~~~~~~~d~~~~~vl~ksDGt~~Y 311 (566)
T TIGR00456 233 LVEYSLEGIKETLARLNIHFDSFVWEGESVKNGMVPKVLEDLKEKGLVVED-GALWLDLTLFGDKDKDRVLQKSDGTYLY 311 (566)
T ss_pred HHHHHHHHHHHHHHHcCCceeeeeccccccccccHHHHHHHHHHCCCEEEc-CCEEEEcccccCCCCCeEEEECCCCcee
Confidence 999999999999999999996 55 6788999999999999999999987 99999987 455 79999999999999
Q ss_pred cCcchhHHHhhhhccCCCeEEEEEeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEeeeeEEcCCCceeeeccCCccc
Q 007251 378 ASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVR 457 (611)
Q Consensus 378 ~t~DiA~~~~r~~~~~~d~iIyV~g~dq~~hf~~l~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~dG~kmSkR~G~~v~ 457 (611)
+|+|||||.||++. ++|++|||||++|++||++++++++++|+. ++.++.|++||+|.+ .|||||+||+|+
T Consensus 312 ~t~DiA~~~~k~~~-~~d~iI~V~g~~q~~h~~~v~~~l~~lG~~-----~~~~l~h~~~~~V~~---~kmSkr~Gn~V~ 382 (566)
T TIGR00456 312 LTRDIAYHLDKLER-GFDKMIYVWGSDHHLHIAQFFAILEKLGFY-----KKKELIHLNFGMVPL---GSMKTRRGNVIS 382 (566)
T ss_pred chhhHHHHHHHHhc-CCCEEEEEecCcHHHHHHHHHHHHHHcCCC-----CCCceEEEEEEEEEC---CCCCccCCceee
Confidence 99999999999964 999999999999999999999999999984 246799999999975 479999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhcCcchhhhhhccCCCCCcccccccccccccCChHHHHHHHHHHH
Q 007251 458 LVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHARI 537 (611)
Q Consensus 458 l~dLldea~~~a~~~~~~r~~~~~~~~~e~~~~a~~vg~~avRy~~L~~~~~~~~~Fd~d~~~~~~gnt~~ylqYa~aRi 537 (611)
++|+++++..||.+.+.++++. +.+++++.+|+||+||++|++++.++++|||++++++++|+++|+||+|||+
T Consensus 383 ~~dll~~~~~ra~~~i~~~~~~------~~~~~~~~vg~dAvRy~~L~~~~~~d~~Fd~d~~~~~~~n~~~yiqYa~aR~ 456 (566)
T TIGR00456 383 LDNLLDEASKRAGNVITIKNDL------EEEDVADAVGIGAVRYFDLSQNRETHYVFDWDAMLSFEGNTAPYIQYAHARI 456 (566)
T ss_pred HHHHHHHHHHHHHHHHHhcCCc------cHHHHHHHhcccceeeHHhhcCCCCCceecHHHHhccCCCCchhHHHHHHHH
Confidence 9999999999999999888553 5678999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhchhhcccCC
Q 007251 538 CSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNCQVQ 611 (611)
Q Consensus 538 ~SIlrKa~~~~~~~~~~~~~~l~~~~e~~L~~~l~~fp~~v~~a~~~~~P~~l~~yL~~La~~fn~fY~~~~Vl 611 (611)
|||+||++.+...... .+..+.++.|+.|+..+.+||+++.+++++++||.+|+|+++||..||+||++||||
T Consensus 457 ~SIlrK~~~~~~~~~~-~~~~~~~~~e~~Ll~~l~~~~~~v~~a~~~~~p~~~~~~l~~La~~~N~yy~~~~Vl 529 (566)
T TIGR00456 457 CSILRKADIDGEKLIA-DDFSLLEEKEKELLKLLLQFPDVLEEAAEELEPHVLTNYLYELASLFSSFYKACPVL 529 (566)
T ss_pred HHHHHhcccccccccc-cccCCCCHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhcCccC
Confidence 9999998643211101 112244788999999999999999999999999999999999999999999999997
No 6
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1e-97 Score=829.03 Aligned_cols=461 Identities=36% Similarity=0.551 Sum_probs=403.9
Q ss_pred hHHhHHHHHHHHHHHHHHhcCCCCCCCccccccc-CCCCcccccchhHHHHHHhcCCCCCCCChHHHHHHHHHhCCCCCC
Q 007251 63 NTGNVKRELEKVFDLALKATVPNETDVRPLIAAC-TAKFGDYQCNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPPSEM 141 (611)
Q Consensus 63 ~~~~~~~~~~~~i~~a~~~~~~~~~~~~~~v~~~-~~~~GD~~~n~A~~lak~~k~~~~~~~~P~~iA~~l~~~l~~~~~ 141 (611)
|++++++.+.+.+.+++........ ....++.| ++++|||+||+||.|||.++ ++|++||++|++.
T Consensus 1 ~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~gd~~~~~a~~lak~~~------~~p~~ia~~i~~~------ 67 (507)
T PRK01611 1 MMMDIKELLAEALAAALEAGGLPEL-PAVLIERPKDPEHGDYATNVAMQLAKKLK------KNPREIAEEIVEA------ 67 (507)
T ss_pred ChHHHHHHHHHHHHHHHHhcccccc-ccceeecCCCCCccCeecHHHHHHHHHcC------CCHHHHHHHHHhh------
Confidence 3556778888888888865321111 12335555 78999999999999999999 9999999999975
Q ss_pred cceeEEecCceeEeecCHHHHHHHHHHHHHcCCC-CCCccCCCceEEEEecCCCCCCCCcchhhhHHHHHHHHHHHHHHC
Q 007251 142 IESCSVAGPGFVNVVLSKNWMAKNIQKMLVDGIE-TWAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFS 220 (611)
Q Consensus 142 i~~vevagpGfIN~~l~~~~~~~~~~~~l~~~~~-~~~~~~~~~kV~Ve~~SpNp~kplHvGHlRsaiiGDsLariL~~~ 220 (611)
|++|+++|||||||+|++.++.+.+.+++..+.. |..+.+++++|+||||||||+|||||||+|++++||+|+|+|+++
T Consensus 68 i~~v~~~~~gfiN~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~Ie~~spnp~g~lHiGH~R~~iigD~laR~lr~~ 147 (507)
T PRK01611 68 IEKVEIAGPGFINFFLDPAALAELVLAILEAGERYGRSDIGKGKKVVVEYVSANPTGPLHVGHLRSAVIGDALARILEFA 147 (507)
T ss_pred eeEEEEeCCCEEEEEECHHHHHHHHHHHHhchhhcCCCcCCCCCEEEEEecCCCCCCCCcCCchHHHHHHHHHHHHHHHc
Confidence 7999999999999999999999999888765544 322335788999999999999999999999999999999999999
Q ss_pred CCeEEEEeccCCchhHHHHHHHHHHhhCCCCCccccchHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHH
Q 007251 221 NVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEA 300 (611)
Q Consensus 221 Gy~V~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~~~~~~~d~~~~~~a~~~~~~le~gd~e~~~~ 300 (611)
||+|+++||+||||+|+++++... ...
T Consensus 148 G~~V~~~~~i~D~G~qi~~~a~~~-----------------------------------------------------~~~ 174 (507)
T PRK01611 148 GYDVTREYYVNDAGTQIGMLIASL-----------------------------------------------------ELL 174 (507)
T ss_pred CCcEEEEeeeCCccHHHHHHHHHH-----------------------------------------------------HHH
Confidence 999999999999999999875321 016
Q ss_pred HHHHHHHHHHHHHHHHHhcCCeee-ecc--cccccCcHHHHHHHHHhCCCce-eecccEEEecc--CCCCCeEEEccCCc
Q 007251 301 WAQICEISRKEFDKVYKRLRVDLE-EKG--ESFYNPYIPGVIDELSKQGLVE-ESQGARVIFIE--GVNIPLIIVKSDGG 374 (611)
Q Consensus 301 w~~~~~~~~~~~~~~~~~LgV~f~-~~~--Es~y~~~v~~vi~~L~~~G~~~-e~dGa~~~~~~--g~~~d~Vl~ksDG~ 374 (611)
|+++++.+++.|+++|++|||+|| |.+ |+.+.+.++++++.|+++|++| +++|++||+++ |+++|+||+||||+
T Consensus 175 ~~~~~~~~~~~~~~~l~~LgI~~D~~~~es~~~~~~~~~~~~~~L~~~G~~y~~~~Ga~~~~~~~~~~~~~~vl~ksdG~ 254 (507)
T PRK01611 175 WRKAVDISLDEIKEDLDRLGVHFDVWFSESELYYNGKVDEVVEDLKEKGLLYVESDGALWVRLTEFGDDKDRVLIKSDGT 254 (507)
T ss_pred HHHHHHHHHHHHHHHHHHcCCeeeEEeecCcchhcchHHHHHHHHHHCCCEEEeeCCcEEEEchhhCCCCCeEEEECCCC
Confidence 888999999999999999999995 544 4466889999999999999999 99999999987 56679999999999
Q ss_pred ccccCcchhHHHhhhhccCCCeEEEEEeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEeeeeEEcCCCceeeeccCC
Q 007251 375 FNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSE 454 (611)
Q Consensus 375 ~tY~t~DiA~~~~r~~~~~~d~iIyV~g~dq~~hf~~l~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~dG~kmSkR~G~ 454 (611)
+||+|+|||||.||++. +|++|||||++|++||++++++++++|+.+ +....+.|+.||+|++++|+|||||+||
T Consensus 255 ~~Y~t~Dia~~~~k~~~--~d~~i~V~g~~q~~hf~~~~~~~~~lg~~~---~~~~~~~h~~~glv~~~~g~KMSkR~Gn 329 (507)
T PRK01611 255 YTYFTRDIAYHLYKFER--FDRVIYVVGADHHGHFKRLKAALKALGYDP---DALEVLLHQMVGLVRGGEGVKMSTRAGN 329 (507)
T ss_pred ccchHHHHHHHHHHHhh--cCEEEEEECCChHHHHHHHHHHHHHcCCCc---ccceEEEEEEEEeeECCCCCcccCCCCc
Confidence 99999999999999964 899999999999999999999999999853 1223489999999999999999999999
Q ss_pred cccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhcCcchhhhhhccCCCCCcccccccccccccCChHHHHHHHH
Q 007251 455 VVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAH 534 (611)
Q Consensus 455 ~v~l~dLldea~~~a~~~~~~r~~~~~~~~~e~~~~a~~vg~~avRy~~L~~~~~~~~~Fd~d~~~~~~gnt~~ylqYa~ 534 (611)
+|+++||++++..+|.+.+.++ ++|+++|+||+||++|+.++.++++|||++++++++|+++|+||+|
T Consensus 330 ~i~l~dll~~a~g~~~~~~~~~------------~~a~~vgidAiR~~~L~~~~~~~~~Fd~~~~~~~~~~~~~yvqYa~ 397 (507)
T PRK01611 330 VVTLDDLLDEAVGRARELIEEK------------EIAEAVGIDAVRYFDLSRSRDKDLDFDLDLALSFEGNNPPYVQYAH 397 (507)
T ss_pred eeEHHHHHHHHHHHHHHHHHhh------------hhhhhhccceeEehhhhcCCCCCCccCHHHHHhhcCCCcHHHHHHH
Confidence 9999999999999999988764 7899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhchhhccc
Q 007251 535 ARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNCQ 609 (611)
Q Consensus 535 aRi~SIlrKa~~~~~~~~~~~~~~l~~~~e~~L~~~l~~fp~~v~~a~~~~~P~~l~~yL~~La~~fn~fY~~~~ 609 (611)
+|+|||++|++..... ... ..+.++.|++|+..|.+||+++.+|+++++||.+|+||++||+.||+||++||
T Consensus 398 aR~~sil~k~~~~~~~--~~~-~~l~~~~e~~Ll~~L~~~~~~v~~a~~~~~p~~l~~yl~~la~~f~~fY~~~~ 469 (507)
T PRK01611 398 ARICSILRKAAEAGID--LLL-ALLTEEEEKELIKKLAEFPEVVESAAEELEPHRIANYLYELAGAFHSFYNRVL 469 (507)
T ss_pred HHHHHHHHhhhccCcc--ccc-cccCCHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHCC
Confidence 9999999998532111 001 12557899999999999999999999999999999999999999999999998
No 7
>KOG1195 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.9e-87 Score=704.94 Aligned_cols=498 Identities=31% Similarity=0.475 Sum_probs=438.6
Q ss_pred ccccccc-CCCCcccccchhHHHHHHhcCCCCCCCChHHHHHHHHHhCCCCCCcceeEEecCceeEeecCHHHHHHHHHH
Q 007251 90 RPLIAAC-TAKFGDYQCNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPPSEMIESCSVAGPGFVNVVLSKNWMAKNIQK 168 (611)
Q Consensus 90 ~~~v~~~-~~~~GD~~~n~A~~lak~~k~~~~~~~~P~~iA~~l~~~l~~~~~i~~vevagpGfIN~~l~~~~~~~~~~~ 168 (611)
.+..|.. +++-||.-.+.. .++ -.|.+.|.+.++.++....++++...|| |++|+|++..+.+.+..
T Consensus 25 ~~~le~~~~~~r~~~~~~lp-----~i~------~~~~~~a~~~~e~~~~~~~v~~~~~~~~-~~~f~ln~~~~~k~~l~ 92 (567)
T KOG1195|consen 25 PPALEQSNSMDRPDLLLPLP-----RIR------VQGKEDALRWAEALPCNRIVEEVGASGP-FVQFFLNRRRLIKSVLP 92 (567)
T ss_pred HHHHHhhccCCCCCccccCc-----ccc------cCCHHHHHHHHHhcccccchHHHhcCCC-eEEEEecHHHHHHHHHH
Confidence 3445555 557788765432 233 3455999999999988788999999997 99999999999988775
Q ss_pred HH-HcCCC-CCCccCCCceEEEEecCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHh
Q 007251 169 ML-VDGIE-TWAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFE 246 (611)
Q Consensus 169 ~l-~~~~~-~~~~~~~~~kV~Ve~~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~G~Q~~~l~~~~~~ 246 (611)
++ ++++. |....+.+++|+|||||||++||+||||+|+||||..++|+.+..||+|++.||+||||+|||+++..+ .
T Consensus 93 ~i~~~~~~~g~~~~~~~k~iVVefSSPNIAK~FHvGhLRsTiiG~flanl~e~~G~~Vtr~NYLGDWGkQFgll~~g~-~ 171 (567)
T KOG1195|consen 93 IIEEQREKYGKNELGSGKKIVVEFSSPNIAKPFHVGHLRSTIIGNFLANLHEALGWEVTRVNYLGDWGKQFGLLALGF-Q 171 (567)
T ss_pred HHHHHhcccCccccccCceEEEEecCCCcccccccchhhhhhhhhHhhhhHHhhCCceeehhhhhHHHHHhhHHhccH-H
Confidence 55 44444 444457799999999999999999999999999999999999999999999999999999999987543 4
Q ss_pred hCCCCCccccchHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHhcCCeee-e
Q 007251 247 KFPNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLE-E 325 (611)
Q Consensus 247 ~~~~~~~~~~~~i~~l~~~y~~~~~~~~~d~~~~~~a~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~LgV~f~-~ 325 (611)
++++++...-++|.+|.+.|+++++..+.+++..+.|++.+.+||.||.+++.+|++|++.+.+.+.++|+||||+|| |
T Consensus 172 ~~g~e~~L~~~pI~hL~dvYVk~nk~~~~~~~~~~~are~f~rlE~~d~e~~k~Wqrfr~lsIe~l~~~Y~Rl~v~FD~y 251 (567)
T KOG1195|consen 172 LYGDEEELQLNPIKHLFDVYVKINKDAEKDPDTAEEAREFFKRLEDGDEEHLKLWQRFRDLSIEKLIKTYNRLNVKFDEY 251 (567)
T ss_pred hhCchhhhccchHHHHHHHHHHhhhhhhhCcchHHHHHHHHHHHhcccHHHHHHHHHhhhhhHHHHHHHHHHhceeeeec
Confidence 556555566799999999999999988888888999999999999999999999999999999999999999999995 6
Q ss_pred cccc-cccCcHHHHHHHHHhCCCceeecccEEEeccCCCC---CeEEEccCCcccccCcchhHHHhhhhccCCCeEEEEE
Q 007251 326 KGES-FYNPYIPGVIDELSKQGLVEESQGARVIFIEGVNI---PLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVT 401 (611)
Q Consensus 326 ~~Es-~y~~~v~~vi~~L~~~G~~~e~dGa~~~~~~g~~~---d~Vl~ksDG~~tY~t~DiA~~~~r~~~~~~d~iIyV~ 401 (611)
.+|| .++..++.+++.+++.|++.+.+|+.||++++.++ -.+++||||+++|.|||||+++.|...+.+|++|||+
T Consensus 252 ~gESqv~~e~~~~~~d~~rs~~l~~e~dG~~vidL~~~~~~~~~~~V~ksdgttLYltRdiaaal~Rl~~y~fdr~iYVv 331 (567)
T KOG1195|consen 252 SGESQVSNEKMQEALDLLRSANLTEEIDGTIVIDLSKIDKKAGKAVVQKSDGTTLYLTRDIAAALDRLEKYSFDRLIYVV 331 (567)
T ss_pred cchHHHHHHHHHHHHHHHHhcCCcccCCCcEEEEecccCcccceEEEEcCCCceehHHHHHHHHHHHHHhcCcceEEEEe
Confidence 7898 66788999999999999999999999999986443 4678999999999999999999999999999999999
Q ss_pred eCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEeeeeEEcCCCceeeeccCCcccHHHHHHHHHHHHHHHHHHhcCCCC
Q 007251 402 DVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKE 481 (611)
Q Consensus 402 g~dq~~hf~~l~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~dG~kmSkR~G~~v~l~dLldea~~~a~~~~~~r~~~~~ 481 (611)
+..|+.||.++|.+++++|+ +|+.+++||+||+|.| ||||+|+++.++|+++++.+.+++.|...... .
T Consensus 332 d~~Q~~hf~~lf~ilk~mg~-----~~a~~~qHV~~G~v~G-----msTRkG~~~fl~dil~e~re~m~e~M~s~~t~-~ 400 (567)
T KOG1195|consen 332 DSQQKDHFCQLFEILKKMGF-----DWAKKLQHVNFGRVQG-----MSTRKGKVVFLDDILEEAREQMLEVMASNKTK-P 400 (567)
T ss_pred chHHHHHHHHHHHHHHHhCc-----hhhhhcceeccccccc-----ccccCCceeeHHHHHHHHHHHHHHHHHhccCC-C
Confidence 99999999999999999999 5788999999999875 99999999999999999999999998865322 5
Q ss_pred CCHHHHHHHHhhcCcchhhhhhccCCCCCcccccccccccccCChHHHHHHHHHHHHHHHHHhCC-ChhhhhhcCCCCCC
Q 007251 482 WTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHARICSIIRKSGK-DIEELKKTGSLVLD 560 (611)
Q Consensus 482 ~~~~e~~~~a~~vg~~avRy~~L~~~~~~~~~Fd~d~~~~~~gnt~~ylqYa~aRi~SIlrKa~~-~~~~~~~~~~~~l~ 560 (611)
...++.+++|+.+|+.|+.+.+++..+.++|.|+|+++.+++|+||+|+||+|+|+.|++||.+. ....+...+...++
T Consensus 401 ~~~~~~~~vad~lg~sAviv~d~k~rr~s~yeF~w~~~~~~~gdtg~yLQY~HsRL~Slerk~~~~~~~~l~~~d~~~l~ 480 (567)
T KOG1195|consen 401 VQMANPDEVADRLGLSAVIVQDFKGRRISNYEFSWNRVLSFEGDTGPYLQYTHSRLRSLERKFSDVTLDDLDEIDFSLLT 480 (567)
T ss_pred CCCCCHHHHHHHHhhHHHHHHHHHHHhcccceEEhhhhheecCCchHHHHHHHHHHHHHHHhccccCchhhhccchhhcC
Confidence 66677889999999999999999999999999999999999999999999999999999999863 22223333445677
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhchhhcccCC
Q 007251 561 HADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNCQVQ 611 (611)
Q Consensus 561 ~~~e~~L~~~l~~fp~~v~~a~~~~~P~~l~~yL~~La~~fn~fY~~~~Vl 611 (611)
+|....|+..|++||+++++++++++|+.++.||+.||.+++++|..-+|+
T Consensus 481 ep~~~~Lv~~L~~fp~vve~s~e~lE~~~lV~YL~~La~a~s~~yk~l~V~ 531 (567)
T KOG1195|consen 481 EPDALLLVRLLLQFPEVVEKSMEQLEPCTLVTYLFKLAHAVSSAYKILWVK 531 (567)
T ss_pred ChhHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHhHHhheeec
Confidence 888778999999999999999999999999999999999999999987774
No 8
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=100.00 E-value=2.6e-77 Score=637.03 Aligned_cols=339 Identities=39% Similarity=0.602 Sum_probs=284.0
Q ss_pred HHHHHHcCCCCCCccCCCceEEEEecCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHH
Q 007251 166 IQKMLVDGIETWAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLF 245 (611)
Q Consensus 166 ~~~~l~~~~~~~~~~~~~~kV~Ve~~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~G~Q~~~l~~~~~ 245 (611)
|.++|.+++.+....+++++|+||||||||||||||||+|||||||+|||||+++||+|+++|||||||+||++++.++.
T Consensus 2 i~~il~~~~~y~~~~~~~~kv~VE~sSpNp~kplHvGHlR~~iiGd~laril~~~G~~V~r~nyigD~G~Q~~~l~~~~~ 81 (354)
T PF00750_consen 2 INEILEKGEEYGSEKGKGKKVVVEFSSPNPTKPLHVGHLRNTIIGDSLARILEAAGYDVTRENYIGDWGTQIGLLAASYK 81 (354)
T ss_dssp HHHHHHHGGGTT--TTTSEEEEEEE---BTTSS-BHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEBTTSHHHHHHHHHHH
T ss_pred HHHHHhcchhcccccCCCCEEEEEecCCCCCCCCcCCcchhhhhhHHHHHHHHHcCCeeeeEEEECCCCHHHHHHHHHHH
Confidence 56777777765334578999999999999999999999999999999999999999999999999999999999997775
Q ss_pred hhCCCCCccccchHHHHHHHHHHHhcccCC-------ChHHHHHHHHHHHHHccCChHHHHHHHH-HHHHHHHHHHHHHH
Q 007251 246 EKFPNSEDANETAIGELQEFYRRSKNRFDS-------DPAFKERAQQAVVRLQSGEPKYHEAWAQ-ICEISRKEFDKVYK 317 (611)
Q Consensus 246 ~~~~~~~~~~~~~i~~l~~~y~~~~~~~~~-------d~~~~~~a~~~~~~le~gd~e~~~~w~~-~~~~~~~~~~~~~~ 317 (611)
....+ +....+++.++.+.|...+..... .+++.+++++.+.++|+|+++..+.|++ +++. ++++|+
T Consensus 82 ~~~~~-~~~~~~~~~~l~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~~~~~~~~~----~k~~l~ 156 (354)
T PF00750_consen 82 KFGDE-ELLEEDPIKHLEDLYVGANKRDEADEIAEKEPEELEEEAREYLKKLEQGDEEFRELWQKYILEW----SKETLQ 156 (354)
T ss_dssp HHHHH-HTSHSSCHHHHHHHHHHHHHHHHHTTCSSGCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHHHHH----HHHHHH
T ss_pred hhhhh-hhcccccccchhhhhhhhhhhhhhhhhccccccccccccceeeeecccccHHHHHHHHHHHHHH----HHHHHH
Confidence 43321 111346788888888876653322 2348899999999999999999999987 5554 555888
Q ss_pred hcCCeee-ec--ccccccCcHHHHHHHHHhCCCceeecccEEEecc--CCCCCeEEEccCCcccccCcchhHHHhhhhcc
Q 007251 318 RLRVDLE-EK--GESFYNPYIPGVIDELSKQGLVEESQGARVIFIE--GVNIPLIIVKSDGGFNYASTDLAALWYRLNEE 392 (611)
Q Consensus 318 ~LgV~f~-~~--~Es~y~~~v~~vi~~L~~~G~~~e~dGa~~~~~~--g~~~d~Vl~ksDG~~tY~t~DiA~~~~r~~~~ 392 (611)
+|+|.|| |+ +||+|.+.++++++.|+++|+++++|||+|++++ |+++|+||+||||++||+|+|||||+||+..+
T Consensus 157 ~l~i~fDv~~~E~Es~~~~~v~~vl~~L~e~g~~~~~dGa~~i~~~~~g~~k~~Vl~ksDGt~~Y~trDiA~~~~r~~~~ 236 (354)
T PF00750_consen 157 RLYIRFDVWFDESESFYSGKVDEVLERLKEKGLLYESDGALWIDLTKFGDDKDRVLRKSDGTSTYLTRDIAYHLYRFEEY 236 (354)
T ss_dssp HTT---SEEEEHCHHHHTTHHHHHHHHHHCTTTEEEETTEEEEEGCCTSTSS-EEEEETTSEB-HHHHHHHHHHHHHCCS
T ss_pred HHHHHhCcCcccchhhhhhHHHHHHHHHHhCCcEEecCCcEEEechhcCCCCcceEEcCCCceEEEcchHHHHHHHHhhh
Confidence 8888884 44 7889999999999999999999999999999998 88899999999999999999999999999889
Q ss_pred CCCeEEEEEeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEeeeeEEcCCCc-eeeeccCCcccHHHHHHHHHHHHHH
Q 007251 393 KAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGK-RLRTRFSEVVRLVDLLDEAKNRSKA 471 (611)
Q Consensus 393 ~~d~iIyV~g~dq~~hf~~l~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~dG~-kmSkR~G~~v~l~dLldea~~~a~~ 471 (611)
++|++|||||++|++||++++++++++|+.+ ...++.|++||+|++++|+ |||||+|++|+|+|||+++.++|.+
T Consensus 237 ~~d~~iyV~~~~q~~hf~~l~~~l~~lg~~~----~~~~~~H~~~g~vl~~~gk~~mstR~G~~i~l~dllde~~~~a~~ 312 (354)
T PF00750_consen 237 GFDKIIYVVGADQKGHFKQLFAILEALGYDP----EAVKLQHVSFGVVLLKDGKVKMSTRKGNVITLDDLLDEAVERALE 312 (354)
T ss_dssp S-SEEEEEEEGGGHHHHHHHHHHHHHTT-HH----HHCTEEEEEE-EEEETTBEESS-TTTTSSTBHHHHHHHHHHHHHH
T ss_pred ccccEEEEecCchhhHHHHHHHHHHHhCCCC----CCCEEEEEEEEEEEcCCCCccccCCCCCceEHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999843 3678999999999999998 9999999999999999999999999
Q ss_pred HHHHhcCCCCCCHHHHHHHHhhcCcchhhhhhccCCCCCcccccc
Q 007251 472 VLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSF 516 (611)
Q Consensus 472 ~~~~r~~~~~~~~~e~~~~a~~vg~~avRy~~L~~~~~~~~~Fd~ 516 (611)
+.++++. +++++.+++|+.+|++|+||++|+.++.+++.|||
T Consensus 313 -~~~~~~~--~~~~~~~~~a~~vg~~Ai~y~~l~~~~~~~~~Fdw 354 (354)
T PF00750_consen 313 -IMEKNPD--LSEEEREEIAEQVGVGAIRYFDLSQKRNKDYVFDW 354 (354)
T ss_dssp -HHHHHTT--CTHCHHHHHHHHHHHHHHHHHHHSS-TTS-EEEEC
T ss_pred -HHhcccC--CChhhHHHHHHHhhhhHHHHHHHhccCCCCceecC
Confidence 7776544 89999999999999999999999999999999998
No 9
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=100.00 E-value=1.3e-53 Score=424.65 Aligned_cols=209 Identities=36% Similarity=0.551 Sum_probs=193.5
Q ss_pred eEEEEecCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCccccchHHHHHH
Q 007251 185 KAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQE 264 (611)
Q Consensus 185 kV~Ve~~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~ 264 (611)
+|+||||||||+||+||||+||+++||+|+|+|+++||+|+++||+||||.||++++...
T Consensus 1 ~v~ve~~spN~~~~~HiGH~R~~vigD~l~R~l~~~G~~V~~~~~~~D~G~qi~~~a~~~-------------------- 60 (212)
T cd00671 1 KILVEFVSANPTGPLHVGHLRNAIIGDSLARILEFLGYDVTREYYINDWGRQIGLLILSL-------------------- 60 (212)
T ss_pred CeEEEecCCCCCCCccccccHHHHHHHHHHHHHHHCCCcEEEEeccCCcHHHHHHHHHHH--------------------
Confidence 589999999999999999999999999999999999999999999999999999775321
Q ss_pred HHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHhcCCeee-ecccccccCcHHHHHHHHH
Q 007251 265 FYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLE-EKGESFYNPYIPGVIDELS 343 (611)
Q Consensus 265 ~y~~~~~~~~~d~~~~~~a~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~LgV~f~-~~~Es~y~~~v~~vi~~L~ 343 (611)
..|+++++.+.+.|+++|++|||.|+ |.+||.+.+.+.++++.|+
T Consensus 61 ----------------------------------~~~~~~~~~~~~~~~~~~~~L~i~~d~~~~es~~~~~~~~~i~~L~ 106 (212)
T cd00671 61 ----------------------------------EKWRKLVEESIKADLETYGRLDVRFDVWFGESSYLGLMGKVVELLE 106 (212)
T ss_pred ----------------------------------HHHHHHHHHHHHHHHHHHHHhCCcCceecchhhhhhHHHHHHHHHH
Confidence 11888999999999999999999995 6788888889999999999
Q ss_pred hCCCceeecccEEEecc--CCCCCeEEEccCCcccccCcchhHHHhhhhccCCCeEEEEEeCCccccHHHHHHHHHHcCC
Q 007251 344 KQGLVEESQGARVIFIE--GVNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGW 421 (611)
Q Consensus 344 ~~G~~~e~dGa~~~~~~--g~~~d~Vl~ksDG~~tY~t~DiA~~~~r~~~~~~d~iIyV~g~dq~~hf~~l~~~~~~lG~ 421 (611)
++|++|+.+|++|++++ ++.+|+||+||||+++|.|+||||+++|+. +++|++|||+|++|..||++++++++++|+
T Consensus 107 ~~g~~~~~~g~~~~~~~~~~~~~d~vl~rsdG~~~Y~~~DlA~~~~~~~-~~~~~~i~v~g~~~~~~~~~~~~~~~~lg~ 185 (212)
T cd00671 107 ELGLLYEEDGALWLDLTEFGDDKDRVLVRSDGTYTYFTRDIAYHLDKFE-RGADKIIYVVGADHHGHFKRLFAALELLGY 185 (212)
T ss_pred HCCCEEEeCCcEEEechhhCCCCCeEEEECCCCccchHHHHHHHHHHHh-cCCCEEEEEECCCHHHHHHHHHHHHHHcCC
Confidence 99999999999999987 456799999999999999999999999995 899999999999999999999999999998
Q ss_pred CCCCCCCCCcEEEEeeeeEEcCCCceeeeccC
Q 007251 422 LSADDSTYPKASHVGFGLVLGEDGKRLRTRFS 453 (611)
Q Consensus 422 ~~~~~~~~~~~~Hv~~g~V~~~dG~kmSkR~G 453 (611)
. ++.++.|++||+|++++|+|||||+|
T Consensus 186 ~-----~~~~~~h~~~~~v~~~~~~kmS~R~G 212 (212)
T cd00671 186 D-----EAKKLEHLLYGMVNLPKEGKMSTRAG 212 (212)
T ss_pred C-----CCCCeEEEEEEeEEcCCCCCCCCCCC
Confidence 4 24689999999999988999999998
No 10
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=100.00 E-value=1.1e-33 Score=320.83 Aligned_cols=328 Identities=16% Similarity=0.192 Sum_probs=248.3
Q ss_pred CCceEEEEecCCCCCCCCcchhhhHHHHHHHHHHHHH-HCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCccccchHH
Q 007251 182 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLE-FSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIG 260 (611)
Q Consensus 182 ~~~kV~Ve~~SpNp~kplHvGHlRsaiiGDsLariL~-~~Gy~V~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~i~ 260 (611)
.+++|-++.|+|+++++.||||+|++|..|+|+|+|+ +.||+|..+..|+|.|..|
T Consensus 57 ~~~~v~~Y~CGPTvYd~~HiGhart~v~~Dil~R~l~~~~Gy~V~~v~nitDidDKI----------------------- 113 (651)
T PTZ00399 57 NGRQVRWYTCGPTVYDSSHLGHARTYVTFDIIRRILEDYFGYDVFYVMNITDIDDKI----------------------- 113 (651)
T ss_pred CCCeeEEEEeCCCccCCcccccchHHHHHHHHHHHHHHhcCCceEEEeCCCCcchHH-----------------------
Confidence 4678999999999999999999999999999999999 9999999999999987522
Q ss_pred HHHHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHhcCCee-eecc-cccccCcHHHH
Q 007251 261 ELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDL-EEKG-ESFYNPYIPGV 338 (611)
Q Consensus 261 ~l~~~y~~~~~~~~~d~~~~~~a~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~LgV~f-~~~~-Es~y~~~v~~v 338 (611)
..++.+. | +..|+++++.+...|.+++++|||.. ++.+ -+.|.+.|.++
T Consensus 114 -----i~~A~~~--------------------g----~~~~~el~~~~~~~f~~d~~~Lni~~p~~~~r~tehi~~ii~~ 164 (651)
T PTZ00399 114 -----IKRAREE--------------------K----LSIFLELARKWEKEFFEDMKALNVRPPDVITRVSEYVPEIVDF 164 (651)
T ss_pred -----HHHHHHh--------------------C----CCcHHHHHHHHHHHHHHHHHHcCCCCCccccCcCccHHHHHHH
Confidence 2222211 1 01245678888899999999999997 5543 37888889999
Q ss_pred HHHHHhCCCceeecccEEEeccCCC-----CCe---------EEEccCCcc-----ccc---CcchhHHHhhhhc-----
Q 007251 339 IDELSKQGLVEESQGARVIFIEGVN-----IPL---------IIVKSDGGF-----NYA---STDLAALWYRLNE----- 391 (611)
Q Consensus 339 i~~L~~~G~~~e~dGa~~~~~~g~~-----~d~---------Vl~ksDG~~-----tY~---t~DiA~~~~r~~~----- 391 (611)
++.|.++|++|+.+|.++|++.... ... ... ..|.. .+. ..|.| +||...
T Consensus 165 i~~Li~~G~aY~~~gsvyFd~~~f~~~~~~Yg~L~p~~~~~~~~~-~~g~~~l~~~~~~Kr~~~DFa--LWk~~kpgep~ 241 (651)
T PTZ00399 165 IQKIIDNGFAYESNGSVYFDVEAFRKAGHVYPKLEPESVADEDRI-AEGEGALGKVSGEKRSPNDFA--LWKASKPGEPS 241 (651)
T ss_pred HHHHHHCCCEEEECCeEEEEchhcccchhhHHhhChhhcCCHHHH-hcccCCccccCcCCCCCccHH--hhCCCCCCCCC
Confidence 9999999999999999999886321 000 000 01110 112 23444 555321
Q ss_pred ----cC---CC--------------eEEEEEeCCccccHHHH-HHHHHHcCCCCCCCCCCCcEEEEeeeeEEcCCCceee
Q 007251 392 ----EK---AE--------------WIIYVTDVGQQLHFDMV-FSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLR 449 (611)
Q Consensus 392 ----~~---~d--------------~iIyV~g~dq~~hf~~l-~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~dG~kmS 449 (611)
|| +. ..++|++.+.++.|++. .++++.-.+.+ ..+|+..|.|.+| |. .+|+|||
T Consensus 242 W~SpwG~GrPGWHiECsam~~~~lg~~~DIh~gG~DL~FPHHeNEiAQseA~~~-~~~~v~y~~H~G~--L~-i~G~KMS 317 (651)
T PTZ00399 242 WDSPWGKGRPGWHIECSAMASNILGDPIDIHSGGIDLKFPHHDNELAQSEAYFD-KHQWVNYFLHSGH--LH-IKGLKMS 317 (651)
T ss_pred CCCCCCCCCCCchHHHHHHHHHHcCCcceeeccCCCCCCCcchhHHHHHHHhhC-CCCCCcEEEEEEE--EE-eccchhh
Confidence 11 11 23688888888877753 34443222221 1267889999955 65 5788999
Q ss_pred eccCCcccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhcCcchhhhhhccCCCCCcccccccccccccCChHHH
Q 007251 450 TRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVY 529 (611)
Q Consensus 450 kR~G~~v~l~dLldea~~~a~~~~~~r~~~~~~~~~e~~~~a~~vg~~avRy~~L~~~~~~~~~Fd~d~~~~~~gnt~~y 529 (611)
||.||+|++.|+|++ +|++++||++|+.++.++++|+++.+.+..+....|
T Consensus 318 KSLGNfItp~dlLek-----------------------------ygaDaLR~~lLs~~~~~dldFS~e~l~~a~~~~~~l 368 (651)
T PTZ00399 318 KSLKNFITIRQALSK-----------------------------YTARQIRLLFLLHKWDKPMNYSDESMDEAIEKDKVF 368 (651)
T ss_pred hcCCCcccHHHHHHH-----------------------------cChHHHHHHHHhcCCCCCCccCHHHHHHHHHHHHHH
Confidence 999999999999998 799999999999999999999999988776666678
Q ss_pred HHHHHHHHHHHHHHhCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HhcchHHHHHHHHHHHHHHhchhh
Q 007251 530 LLYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEAL-TNLLPNVVCEYLYNLSEYFTRFYS 606 (611)
Q Consensus 530 lqYa~aRi~SIlrKa~~~~~~~~~~~~~~l~~~~e~~L~~~l~~fp~~v~~a~-~~~~P~~l~~yL~~La~~fn~fY~ 606 (611)
.+| ++|+++++++.... . ...+ .+.+++|+..+..+++.+.+|+ ++++++.++.+|++|+..+|.||+
T Consensus 369 ~n~-~~rl~s~l~~~~~~-----~--~~~~-~~~d~~Ll~~l~~~~~~v~~Am~Ddfnt~~Al~~L~eLv~~~N~yi~ 437 (651)
T PTZ00399 369 FNF-FANVKIKLRESELT-----S--PQKW-TQHDFELNELFEETKSAVHAALLDNFDTPEALQALQKLISATNTYLN 437 (651)
T ss_pred HHH-HHHHHHHHhhcccc-----c--cccC-CHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHh
Confidence 887 89999998864311 0 1112 4667889999999999999998 779999999999999999999996
No 11
>PLN02946 cysteine-tRNA ligase
Probab=100.00 E-value=8.6e-32 Score=297.70 Aligned_cols=319 Identities=15% Similarity=0.096 Sum_probs=236.8
Q ss_pred CCceEEEEecCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCccccchHHH
Q 007251 182 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 261 (611)
Q Consensus 182 ~~~kV~Ve~~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~ 261 (611)
.+++|-++.|+|+|+++.||||+|+.|..|+|+|+|++.||+|..+..++|.|..|-
T Consensus 77 ~~~~v~~Y~CGpTvYd~~HIGhaR~~V~~Dvl~R~Lr~~Gy~V~~V~niTDiDDKIi----------------------- 133 (557)
T PLN02946 77 VEGKVGMYVCGVTAYDLSHIGHARVYVTFDVLYRYLKHLGYEVRYVRNFTDVDDKII----------------------- 133 (557)
T ss_pred CCCceeEEEeCCccCCCCccccchhhHHHHHHHHHHHhcCCcEEEEECCCCccCHHH-----------------------
Confidence 467899999999999999999999999999999999999999999999999875332
Q ss_pred HHHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHhcCCee-eec-ccccccCcHHHHH
Q 007251 262 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDL-EEK-GESFYNPYIPGVI 339 (611)
Q Consensus 262 l~~~y~~~~~~~~~d~~~~~~a~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~LgV~f-~~~-~Es~y~~~v~~vi 339 (611)
.++.+. | ..|+++++.+.+.|.+++++|||.. +.. ..+.|.+.+.+++
T Consensus 134 -----~~A~~~--------------------g-----~~~~ela~~y~~~f~~d~~~LnI~~p~~~pratehi~~ii~~i 183 (557)
T PLN02946 134 -----ARANEL--------------------G-----EDPISLSRRYCEEFLSDMAYLHCLPPSVEPRVSDHIPQIIDMI 183 (557)
T ss_pred -----HHHHHc--------------------C-----CCHHHHHHHHHHHHHHHHHHCCCCCCCeecCcchhHHHHHHHH
Confidence 122111 1 1135677888899999999999985 333 3578888999999
Q ss_pred HHHHhCCCceeecccEEEecc------------------C----------CCCCeEEEcc--CCcccccCcc--------
Q 007251 340 DELSKQGLVEESQGARVIFIE------------------G----------VNIPLIIVKS--DGGFNYASTD-------- 381 (611)
Q Consensus 340 ~~L~~~G~~~e~dGa~~~~~~------------------g----------~~~d~Vl~ks--DG~~tY~t~D-------- 381 (611)
+.|.++|++|+.+|.+||++. | +..|++|+|. .|.+.|-++-
T Consensus 184 ~~Li~kG~aY~~~g~VYFdv~~f~~YG~Ls~~~l~~l~~g~rv~~~~~K~np~DFaLWK~~k~ge~~W~SPWG~GRPGWH 263 (557)
T PLN02946 184 KQILDNGCAYRVDGDVYFSVDKFPEYGKLSGRKLEDNRAGERVAVDSRKKNPADFALWKAAKEGEPFWDSPWGPGRPGWH 263 (557)
T ss_pred HHHHHCCCEEEECCeEEEecCcchhhhhcCCCChhHhhcCCCCCcccccCCccccceeccCCCCCCCccCCCCCCCCcHH
Confidence 999999999999999999874 1 1247889885 5666555531
Q ss_pred --hhHHHhhhhccCCCeEEEEEeCCccccHHHH---HHHHHH-cCCCCCCCCCCCcEEEEeeeeEEcCCCceeeeccCCc
Q 007251 382 --LAALWYRLNEEKAEWIIYVTDVGQQLHFDMV---FSAAKR-AGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEV 455 (611)
Q Consensus 382 --iA~~~~r~~~~~~d~iIyV~g~dq~~hf~~l---~~~~~~-lG~~~~~~~~~~~~~Hv~~g~V~~~dG~kmSkR~G~~ 455 (611)
+++...++ .| ..++|+|.+.++.|++. .+..++ .|. .++..|.|. |+|+ .+|+|||||.||+
T Consensus 264 IECSaMs~~~--lG--~~~DIH~GG~DL~FPHHENEiAQsea~~g~-----~~a~yW~H~--G~v~-~~G~KMSKSlGN~ 331 (557)
T PLN02946 264 IECSAMSAAY--LG--HSFDIHGGGMDLVFPHHENEIAQSCAACCD-----SNISYWIHN--GFVT-VDSEKMSKSLGNF 331 (557)
T ss_pred HHHHHHHHHH--cC--CCeeEeccccccCCCcccchHHHHHHHhCC-----CCCceeeEe--eEEE-eCCCCcCCcCCCc
Confidence 23223333 22 35789999988877743 233333 343 467789996 7787 6899999999999
Q ss_pred ccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhcCcchhhhhhccCCCCCcccccccccccccCChHHHHHHHHH
Q 007251 456 VRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHA 535 (611)
Q Consensus 456 v~l~dLldea~~~a~~~~~~r~~~~~~~~~e~~~~a~~vg~~avRy~~L~~~~~~~~~Fd~d~~~~~~gnt~~ylqYa~a 535 (611)
++++|++++ +|.+++||++|+.++.++++|+++.+... .+...|+||+++
T Consensus 332 itl~dll~~-----------------------------y~~dalR~~lLs~hyr~~l~fs~e~L~~a-~~~l~~l~~~~~ 381 (557)
T PLN02946 332 FTIRQVIDL-----------------------------YHPLALRLFLLGTHYRSPINYSDVQLESA-SERIFYIYQTLH 381 (557)
T ss_pred CCHHHHHHh-----------------------------cCccceeeeeeccCCCCCcEecHHHHHHH-HHHHHHHHHHHH
Confidence 999999998 69999999999999999999999985443 344559999999
Q ss_pred HHHHHHHHhCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHhchh
Q 007251 536 RICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALT-NLLPNVVCEYLYNLSEYFTRFY 605 (611)
Q Consensus 536 Ri~SIlrKa~~~~~~~~~~~~~~l~~~~e~~L~~~l~~fp~~v~~a~~-~~~P~~l~~yL~~La~~fn~fY 605 (611)
|+++++++...... . . ..+ ..+...+..+.+.+.+|++ ++.-..+...|+++++..|++.
T Consensus 382 ~~~~~l~~~~~~~~-----~-~--~~~--~~~~~~~~~~~~~f~~Al~DDlntp~Al~~l~~~vk~~N~~~ 442 (557)
T PLN02946 382 DCEESLQQHDSTFE-----K-D--SVP--PDTLNCINKFHDEFVTSMSDDLHTPVALAALSEPLKTINDLL 442 (557)
T ss_pred HHHHHhhhhccccc-----c-c--ccc--hhhHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHh
Confidence 99999876421100 0 0 000 1122234455666666664 4777778888888888888765
No 12
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=99.98 E-value=7.8e-31 Score=289.11 Aligned_cols=309 Identities=19% Similarity=0.234 Sum_probs=233.5
Q ss_pred CCceEEEEecCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCccccchHHH
Q 007251 182 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 261 (611)
Q Consensus 182 ~~~kV~Ve~~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~ 261 (611)
.+++|.+..|+|+|+|++||||+|+.++.|+|+|+|+..||+|..+..++|.|..+-.-
T Consensus 20 ~~~~v~~yvcgPtvy~~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~tD~ddki~~~--------------------- 78 (463)
T PRK00260 20 EPGKVKMYVCGPTVYDYAHIGHARSFVVFDVLRRYLRYLGYKVTYVRNITDIDDKIIKR--------------------- 78 (463)
T ss_pred CCCcceEEEeCCccCCCcccccchhHHHHHHHHHHHHhcCCceEEeecCCCCcHHHHHH---------------------
Confidence 35689999999999999999999999999999999999999999999999987533211
Q ss_pred HHHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHhcCCee-eeccc-ccccCcHHHHH
Q 007251 262 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDL-EEKGE-SFYNPYIPGVI 339 (611)
Q Consensus 262 l~~~y~~~~~~~~~d~~~~~~a~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~LgV~f-~~~~E-s~y~~~v~~vi 339 (611)
+.+ .| ..|+++++.+.+.|++++++|||.+ +++.. +.|.+.+.+++
T Consensus 79 -------A~~--------------------~g-----~~~~e~~~~~~~~f~~~~~~Lgi~~~d~~~r~t~~~~~~~~~i 126 (463)
T PRK00260 79 -------ANE--------------------EG-----ESIKELTERYIAAFHEDMDALNVLPPDIEPRATEHIPEIIELI 126 (463)
T ss_pred -------HHH--------------------cC-----CCHHHHHHHHHHHHHHHHHHcCCCCCCccccccccHHHHHHHH
Confidence 111 11 2356788889999999999999965 77653 67888899999
Q ss_pred HHHHhCCCceeecccEEEecc------------------C----------CCCCeEEEcc--CCcccccCc---------
Q 007251 340 DELSKQGLVEESQGARVIFIE------------------G----------VNIPLIIVKS--DGGFNYAST--------- 380 (611)
Q Consensus 340 ~~L~~~G~~~e~dGa~~~~~~------------------g----------~~~d~Vl~ks--DG~~tY~t~--------- 380 (611)
++|.++|++|+.+|.++|+++ | +..|++|+|. .|.+.+.++
T Consensus 127 ~~L~~kG~aY~~~~~Vyfdv~~~~~yg~ls~~~~~~~~~~~~~~~~~~K~~~~DF~Lwk~~~~~~~~w~s~~g~grpgWh 206 (463)
T PRK00260 127 ERLIDKGHAYEADGDVYFDVRKFPDYGKLSGRNLDELQAGARVEVAEEKRDPLDFALWKAAKPGEPSWESPWGKGRPGWH 206 (463)
T ss_pred HHHHHCCCEEEecCeEEEecccccccccCCCCCHHHHhccCcCCcccCCCCccccceecCCCCCCCCCCCCCCCCCCChh
Confidence 999999999999999999874 1 1147888886 455545443
Q ss_pred -chhHHHhhhhccCCCeEEEEEeCCccccHHHH-HHHHH--H-cCCCCCCCCCCCcEEEEeeeeEEcCCCceeeeccCCc
Q 007251 381 -DLAALWYRLNEEKAEWIIYVTDVGQQLHFDMV-FSAAK--R-AGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEV 455 (611)
Q Consensus 381 -DiA~~~~r~~~~~~d~iIyV~g~dq~~hf~~l-~~~~~--~-lG~~~~~~~~~~~~~Hv~~g~V~~~dG~kmSkR~G~~ 455 (611)
++++..+++ .| ..++|++.+.++.|+++ ..+++ + .| . +|+..|.|. |+|. .+|+|||||+||+
T Consensus 207 iecsam~~~~--lg--~~~Dih~gG~DlifpHh~neiaqs~a~~g-~----p~~~~w~H~--g~v~-~~G~KMSKS~GN~ 274 (463)
T PRK00260 207 IECSAMSTKY--LG--ETFDIHGGGADLIFPHHENEIAQSEAATG-K----PFANYWMHN--GFVT-VNGEKMSKSLGNF 274 (463)
T ss_pred HHHHHHHHHh--cC--CCcceecCccccCCCchHhHHHHHHHhcC-C----CcceEEEEc--cEEc-cCCCcccCcCCCC
Confidence 343334443 23 24566766666545533 23333 3 45 2 677889998 6675 7899999999999
Q ss_pred ccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhcCcchhhhhhccCCCCCcccccccccccccCChHHHHHHHHH
Q 007251 456 VRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHA 535 (611)
Q Consensus 456 v~l~dLldea~~~a~~~~~~r~~~~~~~~~e~~~~a~~vg~~avRy~~L~~~~~~~~~Fd~d~~~~~~gnt~~ylqYa~a 535 (611)
|++.|++++ +|++++||++|+.++.++++|+++.+... +..+.
T Consensus 275 i~~~dll~~-----------------------------~~~d~lR~~ll~~~~~~~~~fs~~~l~~a--------~~~~~ 317 (463)
T PRK00260 275 FTIRDLLKK-----------------------------YDPEVLRFFLLSAHYRSPLNFSEEALEQA--------KKALE 317 (463)
T ss_pred CCHHHHHHH-----------------------------cCchHhHHHHHhCCCCCCCccCHHHHHHH--------HHHHH
Confidence 999999998 69999999999999999999999875432 23456
Q ss_pred HHHHHHHHhCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHhchhh
Q 007251 536 RICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALT-NLLPNVVCEYLYNLSEYFTRFYS 606 (611)
Q Consensus 536 Ri~SIlrKa~~~~~~~~~~~~~~l~~~~e~~L~~~l~~fp~~v~~a~~-~~~P~~l~~yL~~La~~fn~fY~ 606 (611)
|+.+.++.... .+.+..+...+..+.+.+.+|++ ++....++..|+++++.+|.+.+
T Consensus 318 rl~~~~~~~~~--------------~~~d~~~~~~l~~~~~~~~~al~ddln~~~Al~~l~~lv~~~n~~~~ 375 (463)
T PRK00260 318 RLYNALAETAL--------------GEDDEALLAELEEFKERFIEAMDDDFNTPEALAVLFELAREINRALE 375 (463)
T ss_pred HHHHHHHHhhh--------------ccchhhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhh
Confidence 66666665420 01123456677788888999995 89999999999999999998764
No 13
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=99.97 E-value=3.9e-30 Score=287.86 Aligned_cols=328 Identities=18% Similarity=0.174 Sum_probs=232.6
Q ss_pred ceEEEEecCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCccccchHHHHH
Q 007251 184 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQ 263 (611)
Q Consensus 184 ~kV~Ve~~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~ 263 (611)
++++|--+-|+|+|++||||+|+.++.|+++|.++..||+|..+..++|+|..+-.-+.
T Consensus 1 ~~~~i~~~~P~~~g~~HiGh~~~~~~~Dv~~R~~r~~G~~v~~v~g~dd~g~~i~~~a~--------------------- 59 (511)
T PRK11893 1 KKFYITTPIYYPNGKPHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIQRKAE--------------------- 59 (511)
T ss_pred CCEEEecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCcEEecCCCCCCChHHHHHHH---------------------
Confidence 46888899999999999999999999999999999999999999999999875432110
Q ss_pred HHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHhcCCeeeec-cc--ccccCcHHHHHH
Q 007251 264 EFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEK-GE--SFYNPYIPGVID 340 (611)
Q Consensus 264 ~~y~~~~~~~~~d~~~~~~a~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~LgV~f~~~-~E--s~y~~~v~~vi~ 340 (611)
+. .. ++ +++++.+...|++++++|||.+|.+ .+ ..|.+.+.++++
T Consensus 60 -------~~-g~------------------~~------~~~~~~~~~~~~~~l~~l~I~~D~~~~t~~~~~~~~v~~~~~ 107 (511)
T PRK11893 60 -------EA-GI------------------SP------QELADRNSAAFKRLWEALNISYDDFIRTTDPRHKEAVQEIFQ 107 (511)
T ss_pred -------Hc-CC------------------CH------HHHHHHHHHHHHHHHHHhCCCcCCceeCCCHHHHHHHHHHHH
Confidence 00 00 11 3467778889999999999999643 33 346788999999
Q ss_pred HHHhCCCceeecccEEEeccC--C--------------------------------------------------------
Q 007251 341 ELSKQGLVEESQGARVIFIEG--V-------------------------------------------------------- 362 (611)
Q Consensus 341 ~L~~~G~~~e~dGa~~~~~~g--~-------------------------------------------------------- 362 (611)
.|.++|++|+.++.+++...- .
T Consensus 108 ~L~~~G~iY~~~~~~~~~~~~~~~l~~~~l~~~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~ 187 (511)
T PRK11893 108 RLLANGDIYLGKYEGWYCVRCEEFYTESELIEDGYRCPPTGAPVEWVEEESYFFRLSKYQDKLLELYEANPDFIQPASRR 187 (511)
T ss_pred HHHHCCCEEEeeeeeeccccccccCCHHHhcCCCCCCCCCCCcceEEecCeEEEEcHHHHHHHHHHHHhCCCccCCHHHH
Confidence 999999999877655443210 0
Q ss_pred ----------CCCeEEEccCC---c--------cc--ccCcchhHH---Hh---------hhh-ccCCCeEEEEEeCCcc
Q 007251 363 ----------NIPLIIVKSDG---G--------FN--YASTDLAAL---WY---------RLN-EEKAEWIIYVTDVGQQ 406 (611)
Q Consensus 363 ----------~~d~Vl~ksDG---~--------~t--Y~t~DiA~~---~~---------r~~-~~~~d~iIyV~g~dq~ 406 (611)
..|..|.|++. . .. ++..=++|. -+ .+. -+..| +++.|.|+.
T Consensus 188 ~~~~~~l~~~~~D~~isR~~~~WGipiP~~~~~~~~vWfda~~~y~s~~~~p~~~~~~~~~~~~~~~~D--~~~~G~D~~ 265 (511)
T PRK11893 188 NEVISFVKSGLKDLSISRTNFDWGIPVPGDPKHVIYVWFDALTNYLTALGYPDDEELLAELFNKYWPAD--VHLIGKDIL 265 (511)
T ss_pred HHHHHHHHCCCCCcccCCCCCCCCccCCCCCCceEEEEecCcHHHHhHhccccccccchhHHHhcCCCc--ceEeccccc
Confidence 01222323110 0 01 110001110 00 000 02222 344555554
Q ss_pred c-cHHHHHHHHHHcCCCCCCCCCCCcEEEEeeeeEEcCCCceeeeccCCcccHHHHHHHHHHHHHHHHHHhcCCCCCCHH
Q 007251 407 L-HFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEE 485 (611)
Q Consensus 407 ~-hf~~l~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~dG~kmSkR~G~~v~l~dLldea~~~a~~~~~~r~~~~~~~~~ 485 (611)
. |.--..+++.++|+ +++..+.| +|+|+. +|+|||||+||+|++.|++++
T Consensus 266 ~~h~~~~~a~~~a~~~-----~~p~~~~~--~g~v~~-~G~KMSKS~GN~i~~~dll~~--------------------- 316 (511)
T PRK11893 266 RFHAVYWPAFLMAAGL-----PLPKRVFA--HGFLTL-DGEKMSKSLGNVIDPFDLVDE--------------------- 316 (511)
T ss_pred ccchhHHHHHHHhCCC-----CCCCEEEe--eccEEE-CCeeecccCCcEEcHHHHHHH---------------------
Confidence 3 22222244455554 23444444 477875 899999999999999999998
Q ss_pred HHHHHHhhcCcchhhhhhccCCC-CCccccccccccc-ccCChHHHHHHHHHHHHHHHHHhCCChhhhhhcCCCCCCCHH
Q 007251 486 ELEQTAEAVGYGAAKYFDLKNNR-LTNYTFSFDQMLN-DKGNTAVYLLYAHARICSIIRKSGKDIEELKKTGSLVLDHAD 563 (611)
Q Consensus 486 e~~~~a~~vg~~avRy~~L~~~~-~~~~~Fd~d~~~~-~~gnt~~ylqYa~aRi~SIlrKa~~~~~~~~~~~~~~l~~~~ 563 (611)
+|+|++||++++..+ .++++||++.+.. .+++.+++++|.++|+.+++++...+. ++. ...+ .+.
T Consensus 317 --------~g~DalR~~ll~~~~~~~d~~Fs~~~~~~~~~~~l~~~l~n~~~r~~~~~~~~~~~~--~~~--~~~~-~~~ 383 (511)
T PRK11893 317 --------YGVDAVRYFLLREIPFGQDGDFSREAFINRINADLANDLGNLAQRTLSMIAKNFDGK--VPE--PGAL-TEA 383 (511)
T ss_pred --------cCcHHHHHHHHhcCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCC--Cccc-chh
Confidence 699999999999855 7999999999865 567788999999999999998863221 111 1112 345
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhchhhcc
Q 007251 564 ERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNC 608 (611)
Q Consensus 564 e~~L~~~l~~fp~~v~~a~~~~~P~~l~~yL~~La~~fn~fY~~~ 608 (611)
++.|+..+..+++.+.+++++++|+.+++++++++..+|.|++.+
T Consensus 384 d~~l~~~l~~~~~~v~~~~~~~~~~~a~~~l~~l~~~~n~y~~~~ 428 (511)
T PRK11893 384 DEALLEAAAALLERVRAAMDNLAFDKALEAILALVRAANKYIDEQ 428 (511)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhC
Confidence 678999999999999999999999999999999999999999865
No 14
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=99.97 E-value=6.2e-30 Score=287.43 Aligned_cols=328 Identities=16% Similarity=0.195 Sum_probs=230.4
Q ss_pred EEEecCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCccccchHHHHHHHH
Q 007251 187 VVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFY 266 (611)
Q Consensus 187 ~Ve~~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~~y 266 (611)
+|.-.-|||+|++||||+|+.++.|+|+|.++..|++|..+..++|.|..+-..+
T Consensus 2 ~it~~~P~~ng~lHiGH~~~~~~aDvl~R~~r~~G~~V~~v~g~D~~g~~i~~~a------------------------- 56 (530)
T TIGR00398 2 LITTALPYANGKPHLGHAYTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKA------------------------- 56 (530)
T ss_pred EEecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCeEEEecccCCCCcHHHHHH-------------------------
Confidence 4667789999999999999999999999999999999999999999886442211
Q ss_pred HHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHhcCCeeeecc---cccccCcHHHHHHHHH
Q 007251 267 RRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKG---ESFYNPYIPGVIDELS 343 (611)
Q Consensus 267 ~~~~~~~~~d~~~~~~a~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~LgV~f~~~~---Es~y~~~v~~vi~~L~ 343 (611)
.+. .. + ++++++.+.+.|+++|++|||.+|++. ++.|.+.+++++++|.
T Consensus 57 ---~~~-g~------------------~------~~e~~~~~~~~~~~~l~~LgI~~D~~~~t~~~~~~~~v~~~~~~L~ 108 (530)
T TIGR00398 57 ---EQE-GL------------------T------PKELVDKYHEEFKDDWKWLNISFDRFIRTTDEEHKEIVQKIFQKLK 108 (530)
T ss_pred ---HHc-CC------------------C------HHHHHHHHHHHHHHHHHHhCCCCCCCccCCCHHHHHHHHHHHHHHH
Confidence 000 00 1 235788889999999999999997543 4567888999999999
Q ss_pred hCCCceeecccEEEecc-----------CC----------------------------------CCCeEEEccC------
Q 007251 344 KQGLVEESQGARVIFIE-----------GV----------------------------------NIPLIIVKSD------ 372 (611)
Q Consensus 344 ~~G~~~e~dGa~~~~~~-----------g~----------------------------------~~d~Vl~ksD------ 372 (611)
++|++|+.++.+++... |. +.+.+.+...
T Consensus 109 ~kG~iY~~~~~v~~~~~~~~~l~~~~v~g~cp~c~~~~~~g~~ce~cg~~~~~~~l~~p~~~~~~~~~e~~~~~~~f~~l 188 (530)
T TIGR00398 109 ENGYIYEKEIKQLYCPECEMFLPDRYVEGTCPKCGSEDARGDHCEVCGRHLEPTELINPRCKICGAKPELRDSEHYFFRL 188 (530)
T ss_pred HCCCEEEeeeEEEecCCCCcCCchhhhcCCCCCCCCcccccchhhhccccCCHHHhcCCccccCCCcceEEecceEEEEh
Confidence 99999987765555321 10 0000000000
Q ss_pred --------------------------------------------------------CcccccCcc--hhHHH---hh---
Q 007251 373 --------------------------------------------------------GGFNYASTD--LAALW---YR--- 388 (611)
Q Consensus 373 --------------------------------------------------------G~~tY~t~D--iA~~~---~r--- 388 (611)
|...|.--| ++|.- +.
T Consensus 189 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~iSR~~~~WGipvP~~~~~~~yvW~da~~~y~~~~~~~~~~ 268 (530)
T TIGR00398 189 SAFEKELEEWIRKNPESGSPASNVKNKAQNWLKGGLKDLAITRDLVYWGIPVPNDPNKVVYVWFDALIGYISSLGILSGD 268 (530)
T ss_pred HHHHHHHHHHHHhCCccCCCcHHHHHHHHHHHhCCCCCccccCcCCCCCeeCCCCCCcEEEEeecchHHhHhhhccccCC
Confidence 001111111 01100 00
Q ss_pred ---hh-ccCC---CeEEEEEeCCccccHHHHH-HHHHHcCCCCCCCCCCCcEEEEeeeeEEcCCCceeeeccCCcccHHH
Q 007251 389 ---LN-EEKA---EWIIYVTDVGQQLHFDMVF-SAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVD 460 (611)
Q Consensus 389 ---~~-~~~~---d~iIyV~g~dq~~hf~~l~-~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~dG~kmSkR~G~~v~l~d 460 (611)
+. -|.. .+++++.|.|...+..-++ +++.++|+. +.. .|+.+|+|+.+ |+|||||+||+|+++|
T Consensus 269 ~~~~~~~w~~~~~~~~v~~~G~Di~~~h~~~~~a~l~~~~~~-----~~~--~~~~~g~v~~~-g~KmSKS~Gn~i~~~d 340 (530)
T TIGR00398 269 TEDWKKWWNNDEDAELIHFIGKDIVRFHTIYWPAMLMGLGLP-----LPT--QVFSHGYLTVE-GGKMSKSLGNVVDPSD 340 (530)
T ss_pred hhhHHHhCCCCCCceEEEEEecccchhHHHHHHHHHHhCCCC-----CCC--EEEeeccEEEC-CceecccCCceecHHH
Confidence 00 0111 1234444444432221222 345667763 222 45567989866 9999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhcCcchhhhhhccCC-CCCcccccccccccc-cCChHHHHHHHHHHHH
Q 007251 461 LLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNN-RLTNYTFSFDQMLND-KGNTAVYLLYAHARIC 538 (611)
Q Consensus 461 Lldea~~~a~~~~~~r~~~~~~~~~e~~~~a~~vg~~avRy~~L~~~-~~~~~~Fd~d~~~~~-~gnt~~ylqYa~aRi~ 538 (611)
++++ +|.|++||++++.. ..+|.+||++.+... +.+...+++|+++|+.
T Consensus 341 ~i~~-----------------------------~g~D~lR~~l~~~~~~~~d~~f~~~~l~~~~n~~l~~~l~n~~~r~~ 391 (530)
T TIGR00398 341 LLAR-----------------------------FGADILRYYLLKERPLGKDGDFSWEDFVERVNADLANKLGNLLNRTL 391 (530)
T ss_pred HHHH-----------------------------cCchHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998 69999999999976 589999999997654 3455679999999999
Q ss_pred HHHHHhCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhchhhccc
Q 007251 539 SIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNCQ 609 (611)
Q Consensus 539 SIlrKa~~~~~~~~~~~~~~l~~~~e~~L~~~l~~fp~~v~~a~~~~~P~~l~~yL~~La~~fn~fY~~~~ 609 (611)
+++.+...+. ++. ....++.++.|+..+.++++.+.+++++++|+.+++++++|+..+|.||+.++
T Consensus 392 ~~~~~~~~~~--~~~---~~~~~~~d~~ll~~l~~~~~~v~~a~e~~~~~~a~~~l~~l~~~~n~Yi~~~k 457 (530)
T TIGR00398 392 GFIKKYFNGV--LPS---EDITDEEDKKLLKLINEALEQIDEAIESFEFRKALREIMKLADRGNKYIDENK 457 (530)
T ss_pred HHHHHhcCCc--CCC---CcccchhhHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9998753221 111 11224668889999999999999999999999999999999999999998764
No 15
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=3.5e-29 Score=267.98 Aligned_cols=251 Identities=17% Similarity=0.193 Sum_probs=195.8
Q ss_pred CCceEEEEecCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCccccchHHH
Q 007251 182 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 261 (611)
Q Consensus 182 ~~~kV~Ve~~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~ 261 (611)
.+.+|-++.|+|+|+...||||+|+.|..|+|.|+|++.||.|..+.+|+|..-
T Consensus 19 ~~~~V~mYvCGpTVYd~~HIGhaRt~V~fDvl~R~L~~~Gy~V~yV~NiTDIDD-------------------------- 72 (464)
T COG0215 19 DPGKVKMYVCGPTVYDYAHIGHARTYVVFDVLRRYLRYLGYKVTYVRNITDIDD-------------------------- 72 (464)
T ss_pred CCCeEEEEecCCccCCccccccCcceehHHHHHHHHHHhCCeEEEEeccccccH--------------------------
Confidence 345599999999999999999999999999999999999999999999999632
Q ss_pred HHHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHhcCCee-eeccc-ccccCcHHHHH
Q 007251 262 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDL-EEKGE-SFYNPYIPGVI 339 (611)
Q Consensus 262 l~~~y~~~~~~~~~d~~~~~~a~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~LgV~f-~~~~E-s~y~~~v~~vi 339 (611)
++..++.+. |- .|+++++.+.++|.++++.|||.. +..+. +.|.+.|.++|
T Consensus 73 --KIi~rA~~~--------------------g~-----~~~ev~~~~i~~f~~D~~aL~v~~p~~~PraTe~I~~iI~~I 125 (464)
T COG0215 73 --KIINRAREE--------------------GL-----SIREVAERYIAAFFEDMDALNVLPPDIEPRATEHIDEIIEFI 125 (464)
T ss_pred --HHHHHHHHh--------------------CC-----CHHHHHHHHHHHHHHHHHHhCCCCCcccCcHhhCHHHHHHHH
Confidence 223333221 11 357788999999999999999975 66654 78888999999
Q ss_pred HHHHhCCCceee-cccEEEecc---------C--------------------CCCCeEEEcc--CCcccccCcc------
Q 007251 340 DELSKQGLVEES-QGARVIFIE---------G--------------------VNIPLIIVKS--DGGFNYASTD------ 381 (611)
Q Consensus 340 ~~L~~~G~~~e~-dGa~~~~~~---------g--------------------~~~d~Vl~ks--DG~~tY~t~D------ 381 (611)
+.|.++|++|+. +|.++|++. + ++.|+||+|+ .|.|.|-++-
T Consensus 126 ~~LiekG~AY~~~~G~VYFdv~~f~~YG~LS~~~~le~l~~gar~~~~~~Krnp~DFvLWK~sk~gEp~W~SPWG~GRPG 205 (464)
T COG0215 126 EKLIEKGYAYVADDGDVYFDVSKFKDYGKLSGRDSLEELQAGARVEVDEEKRNPLDFVLWKAAKPGEPSWDSPWGKGRPG 205 (464)
T ss_pred HHHHHCCceEEecCCcEEEecccchhhHhhcCCCChhHHhhccccccccccCCchhheeeccCCCCCCCCCCCCCCCCCc
Confidence 999999999998 789999873 1 1248899985 5667776642
Q ss_pred ----hhHHHhhhhccCCCeEEEEEeCCccccHHHH-HHHHHHcCCCCCCCCCCCcEEEEeeeeEEcCCCceeeeccCCcc
Q 007251 382 ----LAALWYRLNEEKAEWIIYVTDVGQQLHFDMV-FSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVV 456 (611)
Q Consensus 382 ----iA~~~~r~~~~~~d~iIyV~g~dq~~hf~~l-~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~dG~kmSkR~G~~v 456 (611)
+++...++ ....++|+|.+.++-|++. .++++.-...+ ..+|+..|+|. |||. -+|+|||||.||++
T Consensus 206 WHIECSaM~~~~----LG~~~DIHgGG~DLiFPHHENEiAQsea~~g-~~~~a~yWmH~--G~l~-i~geKMSKSLGNfi 277 (464)
T COG0215 206 WHIECSAMSTKY----LGETFDIHGGGSDLIFPHHENEIAQSEAATG-VKPFAKYWMHN--GFLN-IDGEKMSKSLGNFI 277 (464)
T ss_pred hhHHHHHHHHHH----hCCCcceecCcccccCCCcccHHHHHHhhhC-CCcceeEeEEc--ceee-ecCcCcccccCCee
Confidence 22222222 2244689999998877754 45554322211 02678999999 6575 68999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhcCcchhhhhhccCCCCCcccccccccccc
Q 007251 457 RLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLND 522 (611)
Q Consensus 457 ~l~dLldea~~~a~~~~~~r~~~~~~~~~e~~~~a~~vg~~avRy~~L~~~~~~~~~Fd~d~~~~~ 522 (611)
++.|+|++ ++..++||++|+.+..++++|+.+.+.+.
T Consensus 278 ti~d~l~~-----------------------------~~p~~lR~~lls~HYR~pl~fsee~L~~A 314 (464)
T COG0215 278 TVRDLLKK-----------------------------YDPEVLRLFLLSSHYRSPLDFSEELLEEA 314 (464)
T ss_pred EHHHHHhh-----------------------------cCHHHHHHHHHHHHhCCccccCHHHHHHH
Confidence 99999998 68899999999999999999999987653
No 16
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=99.97 E-value=2e-28 Score=269.59 Aligned_cols=248 Identities=19% Similarity=0.238 Sum_probs=189.9
Q ss_pred CCceEEEEecCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCccccchHHH
Q 007251 182 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 261 (611)
Q Consensus 182 ~~~kV~Ve~~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~ 261 (611)
.+++|.+..|+|+|++++||||+|+.|.+|+++|+|+..||+|..+..++|.|..+-.
T Consensus 18 ~~~~v~~yvcgptvy~~~HiGhar~~v~~Dvl~R~lr~~G~~V~~v~n~tD~ddkIi~---------------------- 75 (465)
T TIGR00435 18 VQGKVKMYVCGPTVYDYCHIGHARTAIVFDVLRRYLRYLGYKVQYVQNITDIDDKIIK---------------------- 75 (465)
T ss_pred CCCcceEEEecCccCCCcccccchHHHHHHHHHHHHHHcCCcEEEEEeeCCccHHHHH----------------------
Confidence 3568999999999999999999999999999999999999999999999998763321
Q ss_pred HHHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHhcCCeeee-c-ccccccCcHHHHH
Q 007251 262 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEE-K-GESFYNPYIPGVI 339 (611)
Q Consensus 262 l~~~y~~~~~~~~~d~~~~~~a~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~LgV~f~~-~-~Es~y~~~v~~vi 339 (611)
++.+. |- .++++++.+.+.|.++|++|||.++. . ..+.|.+.+.+++
T Consensus 76 ------~A~~~--------------------g~-----~~~e~a~~~~~~f~~dl~~LgI~~d~~~~raT~hi~~i~~~i 124 (465)
T TIGR00435 76 ------RAREN--------------------GE-----SVYEVSERFIEAYFEDMKALNVLPPDLEPRATEHIDEIIEFI 124 (465)
T ss_pred ------HHHHc--------------------CC-----CHHHHHHHHHHHHHHHHHHhCCCCCcCCccccccHHHHHHHH
Confidence 11110 10 12467888899999999999999944 3 4688889999999
Q ss_pred HHHHhCCCceeec-ccEEEecc------------------C----------CCCCeEEEcc--CCcccccCc--------
Q 007251 340 DELSKQGLVEESQ-GARVIFIE------------------G----------VNIPLIIVKS--DGGFNYAST-------- 380 (611)
Q Consensus 340 ~~L~~~G~~~e~d-Ga~~~~~~------------------g----------~~~d~Vl~ks--DG~~tY~t~-------- 380 (611)
+.|.++|++|+.+ |++||++. | +..|++|+|+ .|.+.+.++
T Consensus 125 ~~L~ekG~aY~~~~g~vyfdv~~~~~yG~ls~~~~~~~~~~~~~~~~~~K~~p~DF~Lwk~~~~~~~~w~spwG~grpgW 204 (465)
T TIGR00435 125 EQLIEKGYAYVSDNGDVYFDVSKFKDYGKLSKQDLDQLEAGARVDVDEAKRNKLDFVLWKSSKEGEPKWDSPWGKGRPGW 204 (465)
T ss_pred HHHHHCCCEEEecCCcEEEeccccchhccCCCCCHHHHhcccccCcccccCCCCCceeeCCCCCCCCCCcCCCCCCCCCc
Confidence 9999999999998 99999863 1 1257889875 455555442
Q ss_pred --chhHHHhhhhccCCCeEEEEEeCCccccHHH---HHHHHHH-cCCCCCCCCCCCcEEEEeeeeEEcCCCceeeeccCC
Q 007251 381 --DLAALWYRLNEEKAEWIIYVTDVGQQLHFDM---VFSAAKR-AGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSE 454 (611)
Q Consensus 381 --DiA~~~~r~~~~~~d~iIyV~g~dq~~hf~~---l~~~~~~-lG~~~~~~~~~~~~~Hv~~g~V~~~dG~kmSkR~G~ 454 (611)
.+++..+++ .|. .++|++.+.+..|++ ..+..++ .|. +++..|.|. |+|. .+|+|||||+||
T Consensus 205 hiecsam~~~~--lg~--~~Dih~gG~Dl~fpHhene~aqs~a~~g~-----~~~~~~~h~--g~v~-~~g~KMSKS~GN 272 (465)
T TIGR00435 205 HIECSAMNDKY--LGD--QIDIHGGGVDLIFPHHENEIAQSEAAFGK-----QLAKYWMHN--GFLM-IDNEKMSKSLGN 272 (465)
T ss_pred HhHHHHHHHHh--cCC--CceeeccccccccchHHHHHHHHHHhcCC-----CCCcEEEEe--eEEE-ecCccccccCCC
Confidence 244444444 232 245566665554443 3333333 353 567788995 7776 689999999999
Q ss_pred cccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhcCcchhhhhhccCCCCCccccccccccccc
Q 007251 455 VVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDK 523 (611)
Q Consensus 455 ~v~l~dLldea~~~a~~~~~~r~~~~~~~~~e~~~~a~~vg~~avRy~~L~~~~~~~~~Fd~d~~~~~~ 523 (611)
+|++.|++++ +|++++||++|+.++.++++|+++.+.+..
T Consensus 273 ~i~~~dll~~-----------------------------~~~dalR~~ll~~~~~~~l~fs~~~l~~a~ 312 (465)
T TIGR00435 273 FFTVRDVLKN-----------------------------YDPEILRYFLLSVHYRSPLDFSEELLEAAK 312 (465)
T ss_pred cCCHHHHHHH-----------------------------CCHHHHHHHHHhCCCCCCCccCHHHHHHHH
Confidence 9999999998 699999999999999999999999876543
No 17
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.96 E-value=2.3e-28 Score=267.86 Aligned_cols=337 Identities=13% Similarity=0.097 Sum_probs=224.4
Q ss_pred CCceEEEEecCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCccccchHHH
Q 007251 182 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 261 (611)
Q Consensus 182 ~~~kV~Ve~~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~ 261 (611)
.+++|-++.|+|+|+++.||||+|+.|..|+|+|+|+..||+|..+.+|+|.|+..+ +.+ .+++.|.
T Consensus 20 ~~~~v~mYvCGpTvy~~~HiGhar~~v~~Dvl~R~l~~~G~~V~~v~NiTDv~hl~~----------~~D--e~ddKii- 86 (490)
T PRK14536 20 EHGHVRLYGCGPTVYNYAHIGNLRTYVFQDTLRRTLHFLGYRVTHVMNITDVGHLTD----------DAD--SGEDKMV- 86 (490)
T ss_pred CCCceEEEeeCCccCCCcccchhHHHHHHHHHHHHHHhcCCceEEEEeecccccccc----------CCc--CCChHHH-
Confidence 456899999999999999999999999999999999999999999999999985332 111 1344332
Q ss_pred HHHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHhcCCee-eecc-cccccCcHHHHH
Q 007251 262 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDL-EEKG-ESFYNPYIPGVI 339 (611)
Q Consensus 262 l~~~y~~~~~~~~~d~~~~~~a~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~LgV~f-~~~~-Es~y~~~v~~vi 339 (611)
.++.+ .|- .|+++++.+.+.|.+++++|||.+ ++++ .+.|.+.+.+++
T Consensus 87 -----~~A~~--------------------~g~-----~~~e~a~~~~~~f~~d~~~Lni~~~~~~~rat~hi~~ii~~i 136 (490)
T PRK14536 87 -----KSAQE--------------------HGK-----SVLEIAAHYTAAFFRDTARLNIERPSIVCNATEHIQDMIALI 136 (490)
T ss_pred -----HHHHH--------------------cCC-----CHHHHHHHHHHHHHHHHHHcCCCCCceecCcccHHHHHHHHH
Confidence 22211 111 135788899999999999999998 5554 477888899999
Q ss_pred HHHHhCCCceeecccEEEecc------------------C----------CCCCeEEEcc----CC-cccccCcc-----
Q 007251 340 DELSKQGLVEESQGARVIFIE------------------G----------VNIPLIIVKS----DG-GFNYASTD----- 381 (611)
Q Consensus 340 ~~L~~~G~~~e~dGa~~~~~~------------------g----------~~~d~Vl~ks----DG-~~tY~t~D----- 381 (611)
+.|.++|++|+.+|.+||++. | +..|++|+|. .| .+.+-++-
T Consensus 137 ~~L~~kG~aY~~~~~vyFdv~~~~~YG~Ls~~~~~~l~~g~~v~~~~~K~np~DFaLWK~~~~~~~~~~~W~SpWG~GRP 216 (490)
T PRK14536 137 KRLEARGHTYCAGGNVYFDIRTFPSYGSLASAAVEDLQAGARIEHDTNKRNPHDFVLWFTRSKFENHALTWDSPWGRGYP 216 (490)
T ss_pred HHHHHCCCEEEECCeEEEeCCcccchhhhcCCCHHHhhcCCcCCCCCCCCCchhchhcccccCCCCCCCcccCCCCCCCC
Confidence 999999999999999999763 1 1146777653 12 23444321
Q ss_pred -----hhHHHhhhhccCCCeEEEEEeCCccccHHHH-HHHHHHcCCCCCCCCCCCcEEEEeeeeEEcCCCceeeeccCCc
Q 007251 382 -----LAALWYRLNEEKAEWIIYVTDVGQQLHFDMV-FSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEV 455 (611)
Q Consensus 382 -----iA~~~~r~~~~~~d~iIyV~g~dq~~hf~~l-~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~dG~kmSkR~G~~ 455 (611)
+++...++ .|. .++|+|.+.++.|++. .++++..++.. .+|+..|.|. |++. .+|+|||||.||+
T Consensus 217 GWHIECsaMs~~~--lg~--~~DIH~GG~DliFPHHeneiAqs~a~~g--~~~~~~w~h~--g~l~-~~g~KMSKSlGN~ 287 (490)
T PRK14536 217 GWHIECSAMSMKY--LGE--QCDIHIGGVDHIRVHHTNEIAQCEAATG--KPWVRYWLHH--EFLL-MNKGKMSKSAGQF 287 (490)
T ss_pred ChHHHHHHHHHHH--cCC--ceeEEeccccCCCcchhhHHHHHHHhcC--CCcceEEEEc--CEEe-ecCccccccCCCc
Confidence 12222222 232 3588888888877753 34443322211 1678889998 5565 6788999999999
Q ss_pred ccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhcCcchhhhhhccCCCCCcccccccccccccCChHHHHHHHHH
Q 007251 456 VRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHA 535 (611)
Q Consensus 456 v~l~dLldea~~~a~~~~~~r~~~~~~~~~e~~~~a~~vg~~avRy~~L~~~~~~~~~Fd~d~~~~~~gnt~~ylqYa~a 535 (611)
++++||++++ ++.+++||++|+.++.++++|+++.+.+... +--.++.++.
T Consensus 288 itl~dll~~g----------------------------~~~~alR~~lls~~yr~~l~Fs~e~l~~a~~-~~~rl~~~~~ 338 (490)
T PRK14536 288 LTLSSLQEKG----------------------------FQPLDYRFFLLGGHYRSQLAFSWEALKTAKA-ARRSLVRRVA 338 (490)
T ss_pred ccHHHHHhcC----------------------------CCHHHHHHHHHhCCCCCCCCCCHHHHHHHHH-HHHHHHHHHH
Confidence 9999999984 5778999999999999999999999876432 2223433444
Q ss_pred HHHHHHHHhCCChhhhhhcCC-CCCCCHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHhc
Q 007251 536 RICSIIRKSGKDIEELKKTGS-LVLDHADERALGLHLLHFSEVIEEALT-NLLPNVVCEYLYNLSEYFTR 603 (611)
Q Consensus 536 Ri~SIlrKa~~~~~~~~~~~~-~~l~~~~e~~L~~~l~~fp~~v~~a~~-~~~P~~l~~yL~~La~~fn~ 603 (611)
++...+ ....... .... ....+.....+...+..+...+.+|+. ++.-..+...|+++++..|.
T Consensus 339 ~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~f~~al~dDlntp~Al~~l~~~~~~~n~ 404 (490)
T PRK14536 339 RVVDAA---RATTGSV-RGTLAECAAERVAESRASESELLLTDFRAALEDDFSTPKALSELQKLVKDTSV 404 (490)
T ss_pred HHHHhh---hcccccc-cccccccccccccchhhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhhh
Confidence 442211 1000000 0000 000000000111223445566666654 56777778888998888774
No 18
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.96 E-value=4.5e-28 Score=264.45 Aligned_cols=259 Identities=17% Similarity=0.195 Sum_probs=194.4
Q ss_pred ceEEEEecCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCccccchHHHHH
Q 007251 184 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQ 263 (611)
Q Consensus 184 ~kV~Ve~~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~ 263 (611)
++|-++.|+|+|+.++||||+|+.|..|+|+|+|+..||+|..+.+|+|.|+.-| ++. .+++.|.
T Consensus 20 ~~v~mY~CGpTVYd~~HiGh~r~~v~~Dvl~R~l~~~G~~V~~v~NiTDIghltg-----------~~D-~gddKIi--- 84 (481)
T PRK14534 20 SDVKVYACGPTVYNYAHIGNFRTYIFEDLLIKSLRLLKYNVNYAMNITDIGHLTG-----------DFD-DGEDKVV--- 84 (481)
T ss_pred CceEEEeCCCCCCCCCCccchhHHHHHHHHHHHHHHcCCceEEEEeccccccccC-----------Ccc-CCCcHHH---
Confidence 5899999999999999999999999999999999999999999999999986322 211 1344343
Q ss_pred HHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHhcCCee-eecc-cccccCcHHHHHHH
Q 007251 264 EFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDL-EEKG-ESFYNPYIPGVIDE 341 (611)
Q Consensus 264 ~~y~~~~~~~~~d~~~~~~a~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~LgV~f-~~~~-Es~y~~~v~~vi~~ 341 (611)
.++.+ +|- .|+++++.+.+.|.+++++|||.+ ++.+ .+.|.+.+.++++.
T Consensus 85 ---~~A~~--------------------~g~-----~~~e~a~~~~~~f~~d~~~Lni~~~~~~p~atehi~~~i~~i~~ 136 (481)
T PRK14534 85 ---KAARE--------------------RGL-----TVYEISRFFTEAFFDDCKKLNIVYPDKVLVASEYIPIMIEVVKV 136 (481)
T ss_pred ---HHHHH--------------------cCC-----CHHHHHHHHHHHHHHHHHHcCCCCCceecCccchHHHHHHHHHH
Confidence 22221 121 245788889999999999999998 4443 46777889999999
Q ss_pred HHhCCCceeecccEEEecc---------C---------------------CCCCeEEEc-----cCCcccccCc------
Q 007251 342 LSKQGLVEESQGARVIFIE---------G---------------------VNIPLIIVK-----SDGGFNYAST------ 380 (611)
Q Consensus 342 L~~~G~~~e~dGa~~~~~~---------g---------------------~~~d~Vl~k-----sDG~~tY~t~------ 380 (611)
|.++|++|+.+|.+||++. | +..|++|+| .+|.+++-++
T Consensus 137 L~~kG~aY~~~~~vyFdv~~~~~YG~ls~~~l~~l~~~~~~~v~~~~~K~np~DFaLWK~~~~~~~~~~~w~spWG~GrP 216 (481)
T PRK14534 137 LEENGFTYFVNGNVYFDTSCFKSYGQMAGINLNDFKDMSVSRVEIDKSKRNKSDFVLWFTNSKFKDQEMKWDSPWGFGYP 216 (481)
T ss_pred HHHCCCEEEECCeEEEecccccchhhhcCCCHHHHhhhccCcCCcccCCCCcccchhcCcCCcCCCCCCeecCCCCCcCC
Confidence 9999999999999999763 1 114677886 3566666553
Q ss_pred ----chhHHHhhhhccCCCeEEEEEeCCccccHHHH-HHHHHHcCCCCCCCCCCCcEEEEeeeeEEcCCCceeeeccCCc
Q 007251 381 ----DLAALWYRLNEEKAEWIIYVTDVGQQLHFDMV-FSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEV 455 (611)
Q Consensus 381 ----DiA~~~~r~~~~~~d~iIyV~g~dq~~hf~~l-~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~dG~kmSkR~G~~ 455 (611)
.+++..++. ++ ..++|+|.+.+..|++. .++++..+... .+++..|.|. |+|+ -+|+|||||.||+
T Consensus 217 gWHiECsam~~~~--lg--~~~DIH~GG~DliFPHHene~Aqs~a~~g--~~~~~~W~H~--g~l~-~~g~KMSKSlGN~ 287 (481)
T PRK14534 217 SWHLECAAMNLEY--FK--STLDIHLGGVDHIGVHHINEIAIAECYLN--KKWCDMFVHG--EFLI-MEYEKMSKSNNNF 287 (481)
T ss_pred cHHHHHHHHHHHH--cC--CcceEEecccccCCCcchhHHHHHhhhcC--CCcceEEEEe--cEEE-ecCceecccCCCc
Confidence 123333332 23 34678877777766643 34443322211 1577889999 5566 4688999999999
Q ss_pred ccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhcCcchhhhhhccCCCCCcccccccccccc
Q 007251 456 VRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLND 522 (611)
Q Consensus 456 v~l~dLldea~~~a~~~~~~r~~~~~~~~~e~~~~a~~vg~~avRy~~L~~~~~~~~~Fd~d~~~~~ 522 (611)
++++||++++ ++.+++||++|+.++.++++||++.+.+.
T Consensus 288 i~l~dll~~~----------------------------~~~~alR~~lls~~yr~~l~Fs~e~l~~a 326 (481)
T PRK14534 288 ITIKDLEDQG----------------------------FSPLDFRYFCLTAHYRTQLKFTFNNLKAC 326 (481)
T ss_pred ccHHHHHhcC----------------------------CChhHHHHHHHhCCCCCCCCCCHHHHHHH
Confidence 9999999974 57789999999999999999999998764
No 19
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.96 E-value=1.4e-27 Score=265.84 Aligned_cols=309 Identities=15% Similarity=0.202 Sum_probs=217.8
Q ss_pred CCceEEEEecCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCccccchHHH
Q 007251 182 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 261 (611)
Q Consensus 182 ~~~kV~Ve~~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~ 261 (611)
.+++|-++.|+|+|+.+.||||+|+.|..|+|+|+|+..||+|..+..++|.|..|-
T Consensus 245 ~~~~V~mYvCGPTVYd~~HIGHaRt~V~~DVL~R~Lr~~Gy~V~fV~NiTD~DDKII----------------------- 301 (699)
T PRK14535 245 DPENVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLRECGYPLTYVRNITDIDDKII----------------------- 301 (699)
T ss_pred CCCceEEEecCCcCCCCCcccchhHHHHHHHHHHHHHHcCCceEEEeCCcccchHHH-----------------------
Confidence 357899999999999999999999999999999999999999999999999875332
Q ss_pred HHHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHhcCCee-eec-ccccccCcHHHHH
Q 007251 262 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDL-EEK-GESFYNPYIPGVI 339 (611)
Q Consensus 262 l~~~y~~~~~~~~~d~~~~~~a~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~LgV~f-~~~-~Es~y~~~v~~vi 339 (611)
.++.+. | ..|+++++.+.+.|.+++++|||.. ++. ..+.|.+.+.+++
T Consensus 302 -----~~A~e~--------------------G-----~sp~ela~~y~~~F~~d~~~LnI~~p~~~praTeHI~~ii~lI 351 (699)
T PRK14535 302 -----ARAAEN--------------------G-----ETIGELTARFIQAMHEDADALGVLRPDIEPKATENIPQMIAMI 351 (699)
T ss_pred -----HHHHHc--------------------C-----CCHHHHHHHHHHHHHHHHHHcCCCCCcEeeCccchHHHHHHHH
Confidence 122111 1 1135677888899999999999998 443 3578888999999
Q ss_pred HHHHhCCCceee-cccEEEecc-----C-----------------------CCCCeEEEcc--CCcccccCcc-------
Q 007251 340 DELSKQGLVEES-QGARVIFIE-----G-----------------------VNIPLIIVKS--DGGFNYASTD------- 381 (611)
Q Consensus 340 ~~L~~~G~~~e~-dGa~~~~~~-----g-----------------------~~~d~Vl~ks--DG~~tY~t~D------- 381 (611)
+.|.++|++|+. +|.+||++. | +..|++|+|+ .|.+.+-++-
T Consensus 352 ~~LidkG~AYe~~~gsVYFdV~~f~~YG~LS~~~~~~l~~g~rve~d~~Krnp~DFaLWK~sk~Gep~W~SPWG~GRPGW 431 (699)
T PRK14535 352 ETLIQNGKAYPAANGDVYYAVREFAAYGQLSGKSLDDLRAGERVEVDGFKRDPLDFVLWKAAKAGEPAWESPWGNGRPGW 431 (699)
T ss_pred HHHHHCCCEEEeCCCCEEEecccccccccccCCChHHhcCCCccccccccCCccccceeccCCCCCCCccCCCCCCCCch
Confidence 999999999986 688999763 1 1247888884 4666555431
Q ss_pred ---hhHHHhhhhccCCCeEEEEEeCCccccHHHH---HHHHHH-cCCCCCC-----------CCCCCcEEEEeeeeEEcC
Q 007251 382 ---LAALWYRLNEEKAEWIIYVTDVGQQLHFDMV---FSAAKR-AGWLSAD-----------DSTYPKASHVGFGLVLGE 443 (611)
Q Consensus 382 ---iA~~~~r~~~~~~d~iIyV~g~dq~~hf~~l---~~~~~~-lG~~~~~-----------~~~~~~~~Hv~~g~V~~~ 443 (611)
+++...++ .| ..++|+|.+.++.|++. .+..++ .|....+ .+|+..|+|. |+|+ .
T Consensus 432 HIECSAMs~~~--LG--~~~DIHgGG~DLiFPHHENEiAQseA~~g~~~~~~~~~~~~~~~~~~~aryWmHn--G~V~-v 504 (699)
T PRK14535 432 HIECSAMSENL--FG--DTFDIHGGGADLQFPHHENEIAQSVGATGHTCGHHHAQTHHGQSIASHVKYWLHN--GFIR-V 504 (699)
T ss_pred HHHHHHHHHHH--cC--CcceeECCccccCCCCCccHHHHHHHhhCCCcccccccccccccccccccEEEEC--CeEe-e
Confidence 23223333 23 34789999988877743 233333 3431000 1478889999 6676 6
Q ss_pred CCceeeeccCCcccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhcCcchhhhhhccCCCCCccccccccccccc
Q 007251 444 DGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDK 523 (611)
Q Consensus 444 dG~kmSkR~G~~v~l~dLldea~~~a~~~~~~r~~~~~~~~~e~~~~a~~vg~~avRy~~L~~~~~~~~~Fd~d~~~~~~ 523 (611)
+|+|||||.||++++.|++++ +|++++||++|+.++.++++|+++.+.+..
T Consensus 505 dGeKMSKSLGN~it~~dlLe~-----------------------------ygpdalRl~lLsshYRspL~fS~e~Le~Ak 555 (699)
T PRK14535 505 DGEKMSKSLGNFFTIREVLKQ-----------------------------YDPEVVRFFILRAHYRSPLNYSDAHLDDAK 555 (699)
T ss_pred CCCccCCCCCCcCCHHHHHHh-----------------------------CCHHHHHHHHHcCCCCCCCCcCHHHHHHHH
Confidence 899999999999999999998 799999999999999999999999875532
Q ss_pred CChHHHHHHHHHHHHHHHHHhCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHh
Q 007251 524 GNTAVYLLYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALT-NLLPNVVCEYLYNLSEYFT 602 (611)
Q Consensus 524 gnt~~ylqYa~aRi~SIlrKa~~~~~~~~~~~~~~l~~~~e~~L~~~l~~fp~~v~~a~~-~~~P~~l~~yL~~La~~fn 602 (611)
. +..|+...++.... . . . .+...+..+++.+.+|++ ++.-..+...|+++++..|
T Consensus 556 ~--------~l~Rl~~~l~~~~~----~---~-~--------~~~~~l~~~~~~f~~AL~DDlntp~Ala~L~~lvk~iN 611 (699)
T PRK14535 556 G--------ALTRLYTTLKNTPA----A---E-F--------MLSENVNDYTRRFYAAMNDDFGTVEAVAVLFELAGEVN 611 (699)
T ss_pred H--------HHHHHHHHHHhhhh----c---c-c--------hhhhhHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHH
Confidence 1 22344433333210 0 0 0 011123345555555554 4566666667777777766
Q ss_pred c
Q 007251 603 R 603 (611)
Q Consensus 603 ~ 603 (611)
+
T Consensus 612 ~ 612 (699)
T PRK14535 612 K 612 (699)
T ss_pred H
Confidence 5
No 20
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=99.96 E-value=2.7e-27 Score=272.26 Aligned_cols=323 Identities=15% Similarity=0.183 Sum_probs=225.0
Q ss_pred ceEEEEecCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCccccchHHHHH
Q 007251 184 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQ 263 (611)
Q Consensus 184 ~kV~Ve~~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~ 263 (611)
++++|.-.=|+|+|++||||+|+.++.|+++|.+|..||+|......+|.|..+...+.
T Consensus 2 ~~~~itt~~py~ng~~HiGH~~~~l~aDv~aR~~r~~G~~V~~~~g~D~hG~~i~~~A~--------------------- 60 (673)
T PRK00133 2 RKILVTCALPYANGPIHLGHLVEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAE--------------------- 60 (673)
T ss_pred CCEEEeCCCCCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEeCccCCCChHHHHHHH---------------------
Confidence 46788888889999999999999999999999999999999999988887764432210
Q ss_pred HHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHhcCCeeeecc---cccccCcHHHHHH
Q 007251 264 EFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKG---ESFYNPYIPGVID 340 (611)
Q Consensus 264 ~~y~~~~~~~~~d~~~~~~a~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~LgV~f~~~~---Es~y~~~v~~vi~ 340 (611)
+. .. +| +++++.+.+.|++++++|||.++++. +..|...++++++
T Consensus 61 -------~~-g~------------------~p------~e~~~~~~~~~~~~~~~l~i~~d~f~rtt~~~h~~~v~~~~~ 108 (673)
T PRK00133 61 -------KE-GI------------------TP------EELIARYHAEHKRDFAGFGISFDNYGSTHSEENRELAQEIYL 108 (673)
T ss_pred -------Hc-CC------------------CH------HHHHHHHHHHHHHHHHHhCCCCCCCccCCcHHHHHHHHHHHH
Confidence 00 01 11 35678888999999999999997653 3357788999999
Q ss_pred HHHhCCCceeecccEEEecc-----------------------CCC----------------------CCeEEEccCCcc
Q 007251 341 ELSKQGLVEESQGARVIFIE-----------------------GVN----------------------IPLIIVKSDGGF 375 (611)
Q Consensus 341 ~L~~~G~~~e~dGa~~~~~~-----------------------g~~----------------------~d~Vl~ksDG~~ 375 (611)
+|.++|++|+.++.+|+... |+. .+..++.. .
T Consensus 109 ~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~g~cp~C~~~d~~g~~ce~cg~~~~~~~l~~~~~~~~g~~~e~~~~---~ 185 (673)
T PRK00133 109 KLKENGYIYEKTIEQLYDPEKGMFLPDRFVKGTCPKCGAEDQYGDNCEVCGATYSPTELINPKSAISGATPVLKES---E 185 (673)
T ss_pred HHHHCCCEEEeeeEEEEeCCCCCCccchheecccCCCCCcccCCchhhhccccCChHhhcCCccccCCCcceEEec---c
Confidence 99999999987766665421 100 00000000 0
Q ss_pred cccCc--chh----HHHh---------------------------hhhcc-C------CCeEEEEE--------------
Q 007251 376 NYAST--DLA----ALWY---------------------------RLNEE-K------AEWIIYVT-------------- 401 (611)
Q Consensus 376 tY~t~--DiA----~~~~---------------------------r~~~~-~------~d~iIyV~-------------- 401 (611)
.|+.+ +.+ -++. |-..| | .+++||||
T Consensus 186 ~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~ISR~~~W~GipvP~~~~~~iyVW~dal~~Yl~~~~~~ 265 (673)
T PRK00133 186 HFFFKLPRFEEFLKEWITRSGELQPNVANKMKEWLEEGLQDWDISRDAPYFGFEIPGAPGKVFYVWLDAPIGYISSTKNL 265 (673)
T ss_pred eEEEEHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhCCCcccceeeeCCccceECCCCCCeEEEEcccchhhhhHHHhhh
Confidence 11110 000 0000 00012 1 23455554
Q ss_pred -------------------------eCCccccHHHHH-HHHHHcCCCCCCCCCCCcEEEEeeeeEEcCCCceeeeccCCc
Q 007251 402 -------------------------DVGQQLHFDMVF-SAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEV 455 (611)
Q Consensus 402 -------------------------g~dq~~hf~~l~-~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~dG~kmSkR~G~~ 455 (611)
|.|-..++...| +++.++|+. +.. ..+.+|+|+. +|+|||||+||+
T Consensus 266 ~~~~~~~~~~~~w~~~~~~~~v~~iGkDi~~fH~i~wpa~l~a~g~~-----lP~--~v~~hg~v~~-~G~KMSKS~GNv 337 (673)
T PRK00133 266 CDKRGGLDWDEYWKKDSDTELYHFIGKDIIYFHTLFWPAMLEGAGYR-----LPT--NVFAHGFLTV-EGAKMSKSRGTF 337 (673)
T ss_pred cccccchhHHHhcCCCCCceEEEEEeecchhHHHHHHHHHHHhCCCC-----CCC--EEeeeccEEe-cCCcccccCCcc
Confidence 433322111222 334566763 222 3345688987 899999999999
Q ss_pred ccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhcCcchhhhhhccCCC-C-Cccccccccccc-ccCChHH-HHH
Q 007251 456 VRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNR-L-TNYTFSFDQMLN-DKGNTAV-YLL 531 (611)
Q Consensus 456 v~l~dLldea~~~a~~~~~~r~~~~~~~~~e~~~~a~~vg~~avRy~~L~~~~-~-~~~~Fd~d~~~~-~~gnt~~-ylq 531 (611)
|++.|++++ +|.|++|||+|+..+ . +|.+|||+.+.. .+.+... +.+
T Consensus 338 V~p~dlie~-----------------------------ygaDalR~~ll~~~~~~~~D~~Fs~~~~~~~~n~~l~~~l~N 388 (673)
T PRK00133 338 IWARTYLDH-----------------------------LDPDYLRYYLAAKLPETIDDLDFNWEDFQQRVNSELVGKVVN 388 (673)
T ss_pred cCHHHHHHH-----------------------------cCchHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999998 799999999998876 4 699999998754 3444444 555
Q ss_pred HHHHHHHHHHHHhCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhchhhccc
Q 007251 532 YAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNCQ 609 (611)
Q Consensus 532 Ya~aRi~SIlrKa~~~~~~~~~~~~~~l~~~~e~~L~~~l~~fp~~v~~a~~~~~P~~l~~yL~~La~~fn~fY~~~~ 609 (611)
+++ |+++++++...+. + + ..+.+++|+..+.++++.+.+++++++|+.+++++++++..+|.|++.++
T Consensus 389 l~~-R~~~~~~k~~~~~--~----~---~~~~d~~ll~~l~~~~~~v~~a~e~~~~~~a~~~l~~l~~~~N~yi~~~k 456 (673)
T PRK00133 389 FAS-RTAGFINKRFDGK--L----P---DALADPELLEEFEAAAEKIAEAYEAREFRKALREIMALADFANKYVDDNE 456 (673)
T ss_pred HHH-HHHHHHHHhcCCC--C----C---CCcccHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 555 9999998753221 1 0 13457889999999999999999999999999999999999999998764
No 21
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=99.96 E-value=6.1e-27 Score=249.98 Aligned_cols=303 Identities=16% Similarity=0.126 Sum_probs=214.3
Q ss_pred CCCceEEEEecCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCccccchHH
Q 007251 181 LRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIG 260 (611)
Q Consensus 181 ~~~~kV~Ve~~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~i~ 260 (611)
..|.+|-+..|+|+|.+++||||+|+.|..|+|+|+|+..||+|..+..++|.|..|-.
T Consensus 5 ~~~~~v~~YvCGpTvY~~~HIGh~r~~V~~Dvl~R~lr~~G~~V~~V~nitD~ddKIi~--------------------- 63 (384)
T PRK12418 5 APGGTATMYVCGITPYDATHLGHAATYLAFDLVNRVWRDAGHDVHYVQNVTDVDDPLLE--------------------- 63 (384)
T ss_pred CCCCeeEEEecCCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEEecCCcchHHHH---------------------
Confidence 34558999999999999999999999999999999999999999999999998864422
Q ss_pred HHHHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHhcCCe-eeec-ccccccCcHHHH
Q 007251 261 ELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVD-LEEK-GESFYNPYIPGV 338 (611)
Q Consensus 261 ~l~~~y~~~~~~~~~d~~~~~~a~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~LgV~-f~~~-~Es~y~~~v~~v 338 (611)
++.+. | ..++++++.+.+.|.+++++|||. ++.+ .-+.+.+.+.++
T Consensus 64 -------~A~~~--------------------G-----~~~~e~a~~~~~~f~~d~~~Lni~~~~~~~raTe~i~~~~~~ 111 (384)
T PRK12418 64 -------RAARD--------------------G-----VDWRDLAEREIALFREDMEALRVLPPRDYVGAVESIPEVVEL 111 (384)
T ss_pred -------HHHHc--------------------C-----CCHHHHHHHHHHHHHHHHHHhCCCCCCccccCCCCHHHHHHH
Confidence 11111 1 013467788889999999999984 5433 345667889999
Q ss_pred HHHHHhCCCceeecc----cEEEecc-----C-------------------C--C------CCeEEEcc--CCcccccCc
Q 007251 339 IDELSKQGLVEESQG----ARVIFIE-----G-------------------V--N------IPLIIVKS--DGGFNYAST 380 (611)
Q Consensus 339 i~~L~~~G~~~e~dG----a~~~~~~-----g-------------------~--~------~d~Vl~ks--DG~~tY~t~ 380 (611)
++.|.++|++|+.+| .+||++. | + + .|++|+|+ .|.+.|-++
T Consensus 112 i~~L~~kG~aY~~~~~~~~~VYFdv~~~~~YG~ls~~~~~~~~~~~~~~~~~~~~~~K~~p~DFaLWK~~~~~~~~w~sp 191 (384)
T PRK12418 112 VEKLLASGAAYVVDDEEYPDVYFSVDATPQFGYESGYDRATMLELFAERGGDPDRPGKRDPLDALLWRAARPGEPSWPSP 191 (384)
T ss_pred HHHHHHCCCEEEeCCCCCccEEEecCchhhcccccCCCHHHHHhhhcccccCcccccCCCcccceeeccCCCCCCcccCC
Confidence 999999999999988 8999863 1 0 0 25667664 344444443
Q ss_pred c----------hhHHHhhhhccCCCeEEEEEeCCccccHHHH-HHHH--HH-cCCCCCCCCCCCcEEEEeeeeEEcCCCc
Q 007251 381 D----------LAALWYRLNEEKAEWIIYVTDVGQQLHFDMV-FSAA--KR-AGWLSADDSTYPKASHVGFGLVLGEDGK 446 (611)
Q Consensus 381 D----------iA~~~~r~~~~~~d~iIyV~g~dq~~hf~~l-~~~~--~~-lG~~~~~~~~~~~~~Hv~~g~V~~~dG~ 446 (611)
- +++...++ .+ ..++|++.+.++-|+++ .+++ ++ .|- .+|+..|.|. |+| ..+|+
T Consensus 192 wG~GRPGWHiECsam~~~~--lg--~~~DIH~GG~DL~FPHHeneiaq~~a~~g~----~~~~~~w~H~--g~l-~~~G~ 260 (384)
T PRK12418 192 FGPGRPGWHIECSAIALNR--LG--SGFDIQGGGSDLIFPHHEFSAAHAEAATGE----RRFARHYVHA--GMI-GLDGE 260 (384)
T ss_pred CCCCCChhHHHHHHHHHHH--cC--CCcccccCccccccchhHhHHHHHHHhcCC----CCcceEEEEC--CEE-CCCCC
Confidence 1 23223332 22 34678888877777754 3333 33 343 2578889997 545 57999
Q ss_pred eeeeccCCcccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhcCcchhhhhhccCCCCCcccccccccccccCCh
Q 007251 447 RLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNT 526 (611)
Q Consensus 447 kmSkR~G~~v~l~dLldea~~~a~~~~~~r~~~~~~~~~e~~~~a~~vg~~avRy~~L~~~~~~~~~Fd~d~~~~~~gnt 526 (611)
|||||.||++++.|+++.. ..++++||++|+.++.++++|+++.+.+...
T Consensus 261 KMSKSlGN~i~~~ell~~G----------------------------~d~~~lR~~lls~~yr~~l~fs~e~l~~a~~-- 310 (384)
T PRK12418 261 KMSKSRGNLVFVSRLRAAG----------------------------VDPAAIRLALLAGHYRADREWTDAVLAEAEA-- 310 (384)
T ss_pred cccCcCCCcCCHHHHHhcc----------------------------CChhheeEEEeccCCCCCcccCHHHHHHHHH--
Confidence 9999999999999987641 2344899999999999999999998754221
Q ss_pred HHHHHHHHHHHHHHHHHhCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHhchh
Q 007251 527 AVYLLYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALT-NLLPNVVCEYLYNLSEYFTRFY 605 (611)
Q Consensus 527 ~~ylqYa~aRi~SIlrKa~~~~~~~~~~~~~~l~~~~e~~L~~~l~~fp~~v~~a~~-~~~P~~l~~yL~~La~~fn~fY 605 (611)
.+.|+.+.++... .+ .+..+.+.+.+|+. ++....+...|+++++..|.+-
T Consensus 311 ------~l~r~~~~~~~~~---------------~~-------~~~~~~~~f~~al~dDlnt~~a~~~l~~~~~~~n~~~ 362 (384)
T PRK12418 311 ------RLARWRAAAALPA---------------GP-------DAADVVARVRAALADDLDTPGALAAVDGWATDALEGG 362 (384)
T ss_pred ------HHHHHHHHHhccc---------------cc-------hHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhcc
Confidence 2234433332210 00 12234555666665 4788888899999999998875
No 22
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=99.95 E-value=7e-28 Score=246.65 Aligned_cols=247 Identities=21% Similarity=0.251 Sum_probs=173.2
Q ss_pred CCCceEEEEecCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCccccchHH
Q 007251 181 LRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIG 260 (611)
Q Consensus 181 ~~~~kV~Ve~~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~i~ 260 (611)
..+++|-+..|+|+|....||||+|+.|..|+|.|+|++.||+|..+..|+|..-
T Consensus 4 ~~~~~v~~Y~CGPTVYd~~HiGhaR~~v~~D~l~R~L~~~g~~V~~V~NiTDiDD------------------------- 58 (300)
T PF01406_consen 4 LNPGKVRMYVCGPTVYDYAHIGHARTYVFFDVLRRYLEYLGYDVTYVMNITDIDD------------------------- 58 (300)
T ss_dssp SCTTEEEEEEEEEBTTS--BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEB-SSH-------------------------
T ss_pred CCCCeEEEEcCCCCCCCCCCCcceeeeeeHHHHHHHHHHcCCeEEEEEeccccch-------------------------
Confidence 3578999999999999999999999999999999999999999999999999742
Q ss_pred HHHHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHhcCCee-eecc-cccccCcHHHH
Q 007251 261 ELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDL-EEKG-ESFYNPYIPGV 338 (611)
Q Consensus 261 ~l~~~y~~~~~~~~~d~~~~~~a~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~LgV~f-~~~~-Es~y~~~v~~v 338 (611)
++++++.+. | ..|+++++.+.+.|.+++++|||.- +.++ -|.+.+.+.+.
T Consensus 59 ---Kii~~A~~~--------------------g-----~~~~ela~~y~~~f~~dm~~Lnv~~p~~~prate~i~~ii~~ 110 (300)
T PF01406_consen 59 ---KIIKRAREE--------------------G-----VSPQELARRYEEEFFEDMKALNVLPPDHYPRATEHIPEIIEL 110 (300)
T ss_dssp ---HHHHHHHHT--------------------T-----S-HHHHHHHHHHHHHHHHHHTT----SEEEEGGGGHHHHHHH
T ss_pred ---HHHHHHHhc--------------------c-----CCHHHHHHHHHHHHHHHHHHcCCCCCccccchhccHHHHHHH
Confidence 223333221 1 1256778888999999999999997 5544 47788889999
Q ss_pred HHHHHhCCCceeec-ccEEEecc-----C-----------------------CCCCeEEEcc--CCcccccCc-------
Q 007251 339 IDELSKQGLVEESQ-GARVIFIE-----G-----------------------VNIPLIIVKS--DGGFNYAST------- 380 (611)
Q Consensus 339 i~~L~~~G~~~e~d-Ga~~~~~~-----g-----------------------~~~d~Vl~ks--DG~~tY~t~------- 380 (611)
++.|.++|++|+.+ |.++|+++ | +..|++|+|. .|.+.|-++
T Consensus 111 i~~Li~~G~AY~~~~g~VYFdv~~~~~YG~Ls~~~~~~l~~~~~~~~~~~K~~p~DFaLWK~~~~~e~~w~spwG~GRPG 190 (300)
T PF01406_consen 111 IEKLIDKGHAYESEDGSVYFDVSKFPDYGKLSNQDLEDLEAGARVEVDYEKRNPRDFALWKAAKPGEPSWDSPWGKGRPG 190 (300)
T ss_dssp HHHHHHTTSEEEETTSEEEE-CCGSTTTTTTTT-SHHHHHHCHHHTT-TTSSSTT-EEEEEE--TTS--B--TTSSEEE-
T ss_pred HHHHHHCCCeEEcCCCcEEEeeccccccccccccchhhHHhhhhcccccccCCCcceeeeecccccCCcccCCCccCcCc
Confidence 99999999999998 99999874 1 1258899886 344555442
Q ss_pred ---chhHHHhhhhccCCCeEEEEEeCCccccHHHH---HHHHHHc-CCCCCCCCCCCcEEEEeeeeEEcCCCceeeeccC
Q 007251 381 ---DLAALWYRLNEEKAEWIIYVTDVGQQLHFDMV---FSAAKRA-GWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFS 453 (611)
Q Consensus 381 ---DiA~~~~r~~~~~~d~iIyV~g~dq~~hf~~l---~~~~~~l-G~~~~~~~~~~~~~Hv~~g~V~~~dG~kmSkR~G 453 (611)
-+++...++ +| ..|+|+|.+.++-|++. .+..+++ |. +|+..|.|. |+|. -+|+|||||.|
T Consensus 191 WHiECsam~~~~--lG--~~~DIH~GG~DL~FPHHENEiAqs~a~~g~-----~~a~~W~H~--g~l~-~~g~KMSKSlg 258 (300)
T PF01406_consen 191 WHIECSAMSMKY--LG--DTFDIHGGGIDLIFPHHENEIAQSEAATGK-----PFANYWMHN--GHLN-VDGEKMSKSLG 258 (300)
T ss_dssp HHHHHHHHHHHH--HT--TSEEEEEEEGGGTTTHHHHHHHHHHHHHSS------SEEEEEEE----EE-ETTCE--TTTT
T ss_pred eeeehHHHHHHH--cC--CCceEEccccccCCCCccchHHHHHHhhCc-----hHHHHHHHH--HHHh-hcCccccccCC
Confidence 233333343 33 23888888888877754 3334444 42 688999999 6576 57899999999
Q ss_pred CcccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhcCcchhhhhhccCCCCCccccccccccc
Q 007251 454 EVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLN 521 (611)
Q Consensus 454 ~~v~l~dLldea~~~a~~~~~~r~~~~~~~~~e~~~~a~~vg~~avRy~~L~~~~~~~~~Fd~d~~~~ 521 (611)
|+++++|+++. +..+++||++|+.+..++++|+++.+.+
T Consensus 259 N~~~i~dll~~-----------------------------~~~~~lR~~~l~~hYr~~l~~s~~~l~~ 297 (300)
T PF01406_consen 259 NFITIRDLLKK-----------------------------YSPDALRLFLLSTHYRKPLNFSEENLEE 297 (300)
T ss_dssp ---BHHHHHTT-----------------------------S-HHHHHHHHHTS-TTS-EEE-HHHHHH
T ss_pred CEEEHHHHhhc-----------------------------CCHHHHHHHHhcCCCCCccccCHHHHHH
Confidence 99999999987 6889999999999999999999997754
No 23
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=99.95 E-value=1.1e-26 Score=249.21 Aligned_cols=250 Identities=17% Similarity=0.147 Sum_probs=184.9
Q ss_pred CceEEEEecCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCccccchHHHH
Q 007251 183 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 262 (611)
Q Consensus 183 ~~kV~Ve~~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l 262 (611)
+++|-+..|+|.|++++||||+|+.|..|+|+|+|+..||+|..+..++|.|..|-.
T Consensus 34 ~~~v~~YvCGpTvY~~~HIGhart~V~~Dvl~R~lr~~G~~V~fV~nitD~dDKIi~----------------------- 90 (411)
T TIGR03447 34 GPEAGMYVCGITPYDATHLGHAATYLTFDLVNRVWRDAGHRVHYVQNVTDVDDPLFE----------------------- 90 (411)
T ss_pred CCcceEEEeCCccCCCcccccchHHHHHHHHHHHHHhcCCceEEeeCCCchhHHHHH-----------------------
Confidence 568999999999999999999999999999999999999999999999998864422
Q ss_pred HHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHhcCCe-ee-ecccccccCcHHHHHH
Q 007251 263 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVD-LE-EKGESFYNPYIPGVID 340 (611)
Q Consensus 263 ~~~y~~~~~~~~~d~~~~~~a~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~LgV~-f~-~~~Es~y~~~v~~vi~ 340 (611)
++.+. | ..++++++.+...|.+++++|||. ++ +..-+.+.+.+.++++
T Consensus 91 -----~A~~~--------------------g-----~t~~ela~~y~~~f~~d~~~Lni~~~d~~~RaTe~i~~ii~~i~ 140 (411)
T TIGR03447 91 -----RAERD--------------------G-----VDWRELGTSQIDLFREDMEALRVLPPRDYIGAVESIDEVIEMVE 140 (411)
T ss_pred -----HHHHc--------------------C-----CCHHHHHHHHHHHHHHHHHHcCCCCCCcccCCCCCHHHHHHHHH
Confidence 11111 1 112467788889999999999987 44 3334666788999999
Q ss_pred HHHhCCCceeecc----cEEEecc-----C----C-----------------C------CCeEEEcc--CCcccccCcc-
Q 007251 341 ELSKQGLVEESQG----ARVIFIE-----G----V-----------------N------IPLIIVKS--DGGFNYASTD- 381 (611)
Q Consensus 341 ~L~~~G~~~e~dG----a~~~~~~-----g----~-----------------~------~d~Vl~ks--DG~~tY~t~D- 381 (611)
.|.++|++|+.+| .+||++. | . + .|++|+|. .|.+.|-++-
T Consensus 141 ~L~~kG~aY~~~~~~~~~VYFdv~~~~~YG~Ls~~~~~~~~~~~~~~~~~~~~~~K~~p~DFaLWK~~~~~e~~w~spwG 220 (411)
T TIGR03447 141 KLLAAGAAYEVEGPEYPDVYFSIEATEQFGYESGYDRATMLELFAERGGDPDRPGKRDPLDALLWRAAREGEPSWDSPFG 220 (411)
T ss_pred HHHHCCCEEecCCCCcCcEEEeccchhccccccCCCHHHHHhhhcccccCcccccCCCCcccceeCCCCCCCCCccCCCC
Confidence 9999999999887 7999863 1 0 1 25666663 3444444321
Q ss_pred ---------hhHHHhhhhccCCCeEEEEEeCCccccHHHH-HHHHHHcCCCCCCCCCCCcEEEEeeeeEEcCCCceeeec
Q 007251 382 ---------LAALWYRLNEEKAEWIIYVTDVGQQLHFDMV-FSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTR 451 (611)
Q Consensus 382 ---------iA~~~~r~~~~~~d~iIyV~g~dq~~hf~~l-~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~dG~kmSkR 451 (611)
+++...++ .| ..++|++.+.++.|+++ +++++.....+ ..+|+..|.|. |+|. .+|+|||||
T Consensus 221 ~GRPGWHiECsam~~~~--lg--~~~Dih~GG~DLifpHheneiaq~~A~~g-~~~~~~~w~H~--g~l~-~~G~KMSKS 292 (411)
T TIGR03447 221 PGRPGWHIECSAIATNR--LG--AGFDIQGGGSDLIFPHHEFSAAHAEAATG-VRRMARHYVHA--GMIG-LDGEKMSKS 292 (411)
T ss_pred CCCChhHHHHHHHHHHH--cC--CceecccCcccccccchHhHHHHHHHhcC-CCCcceEEEEC--CEEC-cCCCCccCc
Confidence 22222232 22 34788888877777754 34443222211 12688899998 5564 789999999
Q ss_pred cCCcccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhcCcchhhhhhccCCCCCccccccccccc
Q 007251 452 FSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLN 521 (611)
Q Consensus 452 ~G~~v~l~dLldea~~~a~~~~~~r~~~~~~~~~e~~~~a~~vg~~avRy~~L~~~~~~~~~Fd~d~~~~ 521 (611)
.||++++.|+++.. .+.+++||++|+.++.++++|+.+.+.+
T Consensus 293 lGN~i~~~dl~~~g----------------------------~dp~~lRl~lls~~Yr~pl~fs~e~l~~ 334 (411)
T TIGR03447 293 LGNLVFVSKLRAAG----------------------------VDPAAIRLGLLAGHYRQDRDWTDAVLAE 334 (411)
T ss_pred CCCCCCHHHHHhcC----------------------------CCcccEEEEEecCCCCCCCccCHHHHHH
Confidence 99999999987652 4677999999999999999999998755
No 24
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=99.95 E-value=2.2e-26 Score=260.20 Aligned_cols=331 Identities=14% Similarity=0.130 Sum_probs=225.7
Q ss_pred ceEEEEecCCCCCCCCcchhhhHH-HHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCccccchHHHH
Q 007251 184 KKAVVDFSSPNIAKEMHVGHLRST-IIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 262 (611)
Q Consensus 184 ~kV~Ve~~SpNp~kplHvGHlRsa-iiGDsLariL~~~Gy~V~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l 262 (611)
++++|.-.-|+|+|.+||||+|+. ++.|+++|.+|..|++|.....++|.|..+..-+.
T Consensus 3 ~~~~i~~~~py~ng~~HiGH~~~~~~~~D~~~R~~r~~G~~v~~~~g~d~~g~~i~~~a~-------------------- 62 (556)
T PRK12268 3 MRILITSAWPYANGPLHLGHLAGSGLPADVFARYQRLKGNEVLFVSGSDEHGTPIELAAK-------------------- 62 (556)
T ss_pred CcEEEecCCCCCCCCccccccccchhHHHHHHHHHHhcCCceEecCcCCCcccHHHHHHH--------------------
Confidence 468899999999999999999999 99999999999999999999999998865432210
Q ss_pred HHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHhcCCeeeecc---cccccCcHHHHH
Q 007251 263 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKG---ESFYNPYIPGVI 339 (611)
Q Consensus 263 ~~~y~~~~~~~~~d~~~~~~a~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~LgV~f~~~~---Es~y~~~v~~vi 339 (611)
+. .. + .+++++.+.+.|++.+++|||.++++. +..|...+.+++
T Consensus 63 --------~~-g~------------------~------~~~~~~~~~~~~~~~~~~l~i~~d~~~~t~~~~~~~~~~~~~ 109 (556)
T PRK12268 63 --------KE-GV------------------T------PQELADKYHEEHKEDFKKLGISYDLFTRTTSPNHHEVVQEFF 109 (556)
T ss_pred --------Hc-CC------------------C------HHHHHHHHHHHHHHHHHHcCCcCCCCcCCCCHHHHHHHHHHH
Confidence 00 00 1 134677778899999999999987543 235678899999
Q ss_pred HHHHhCCCceeecccEEEecc-----------C------------CC---------------------------------
Q 007251 340 DELSKQGLVEESQGARVIFIE-----------G------------VN--------------------------------- 363 (611)
Q Consensus 340 ~~L~~~G~~~e~dGa~~~~~~-----------g------------~~--------------------------------- 363 (611)
++|.++|++|+.++.+++... | +.
T Consensus 110 ~~L~~~G~~y~~~~~~~~~~~~~~~l~~~~v~g~cp~c~~~~~~G~~ce~cg~~~~~~~l~~p~~~~~~~~~e~~~~~qw 189 (556)
T PRK12268 110 LKLYENGYIYKKTIEQAYCPSDGRFLPDRYVEGTCPYCGYEGARGDQCDNCGALLDPTDLINPRSKISGSTPEFRETEHF 189 (556)
T ss_pred HHHHHCCCeEEeeeEEEecCCCCcCcCccceeccCCCCCCcccCCchhhhccccCChHHhcCCccccCCCcCeEEecceE
Confidence 999999999987665555321 1 00
Q ss_pred -------------------------------------CCeEEEc------------cCCcccccCcch--hHH---Hh--
Q 007251 364 -------------------------------------IPLIIVK------------SDGGFNYASTDL--AAL---WY-- 387 (611)
Q Consensus 364 -------------------------------------~d~Vl~k------------sDG~~tY~t~Di--A~~---~~-- 387 (611)
.|.-+-| .+|...|..-|. +|. ..
T Consensus 190 F~~l~~~~~~l~~~~~~~~~~p~~~~~~~~~~l~~~l~Dw~ISR~~~WGipiP~~~~~~~~iyvW~da~~~y~~~~~~~~ 269 (556)
T PRK12268 190 FLDLPAFAERLRAWIESSGDWPPNVLNFTLNWLKEGLKPRAITRDLDWGIPVPWPGFEGKVFYVWFDAVIGYISASKEWA 269 (556)
T ss_pred EEEhHHHHHHHHHHHhhccCCCHHHHHHHHHHHhCCCCCcCceeeCCCCeeCCCCCCCCcEEEEeehHhhHHHHHHHHHH
Confidence 0000000 011222221120 110 00
Q ss_pred h-------hh-cc-CC-CeEEEEEeCCccccHHHHH-HHHHHcCCCCCCCCCCCcEEEEeeeeEEcCCCceeeeccCCcc
Q 007251 388 R-------LN-EE-KA-EWIIYVTDVGQQLHFDMVF-SAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVV 456 (611)
Q Consensus 388 r-------~~-~~-~~-d~iIyV~g~dq~~hf~~l~-~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~dG~kmSkR~G~~v 456 (611)
+ +. -| .. -..+.|.|.|+......++ .++.+.|..- .++ ..++.+|+|+. +|+|||||+||+|
T Consensus 270 ~~~g~~~~~~~~w~ds~~~~~~~~G~D~~~Fh~~~~p~~l~~~~~~~---~~P--~~v~~~G~v~~-~G~KMSKS~GN~I 343 (556)
T PRK12268 270 ERTGDPEAWKEFWLDPETKSYYFIGKDNIPFHSIIWPAMLLGSGEPL---KLP--DEIVSSEYLTL-EGGKFSKSRGWGI 343 (556)
T ss_pred HhcCCchHHHHHhCCCCCeEEEEEeeccCcchHHHHHHHHHhcCCCC---CCC--CEeeccCCEEE-CCeeeccCCCccc
Confidence 0 00 00 00 0134455555543222223 3345566210 122 25667788874 7999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhcCcchhhhhhccCCC-CCcccccccccccc-cCChHH-HHHHH
Q 007251 457 RLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNR-LTNYTFSFDQMLND-KGNTAV-YLLYA 533 (611)
Q Consensus 457 ~l~dLldea~~~a~~~~~~r~~~~~~~~~e~~~~a~~vg~~avRy~~L~~~~-~~~~~Fd~d~~~~~-~gnt~~-ylqYa 533 (611)
++.|++++ +|.||+||++++..+ ..|.+||++.+... +.+... +.+|+
T Consensus 344 ~p~dli~~-----------------------------yGaDalR~~ll~~~~~~~d~~f~~~~~~~~~~~~~~~~l~n~~ 394 (556)
T PRK12268 344 WVDDALER-----------------------------YPPDYLRYYLAANAPENSDTDFTWEEFVRRVNSELADKYGNLV 394 (556)
T ss_pred CHHHHHHH-----------------------------cCcHHHHHHHHhcCCCCCCCCCCHHHHHHHHhHHhhhhHHHHH
Confidence 99999998 699999999998865 58999999986543 333343 55555
Q ss_pred HHHHHHHHHHhCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhchhhccc
Q 007251 534 HARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNCQ 609 (611)
Q Consensus 534 ~aRi~SIlrKa~~~~~~~~~~~~~~l~~~~e~~L~~~l~~fp~~v~~a~~~~~P~~l~~yL~~La~~fn~fY~~~~ 609 (611)
+|+++++++...+. ++ ... .++.+++|+..+..+++.+.+++++++++.+++++++++..+|.|++..+
T Consensus 395 -~r~~~~~~~~~~~~--~~---~~~-~~~~d~~ll~~l~~~~~~v~~~~~~~~~~~a~~~l~~~~~~~n~yi~~~k 463 (556)
T PRK12268 395 -NRVLSFIEKYFGGI--VP---PGE-LGDEDRELIAEAEALFKEVGELLEAGEFKKALEEIMELAREANKYLDEKA 463 (556)
T ss_pred -HHHHHHHHHhcCCc--CC---CCc-CCcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCC
Confidence 79999988753221 11 111 24567889999999999999999999999999999999999999997643
No 25
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=4.2e-26 Score=252.64 Aligned_cols=330 Identities=19% Similarity=0.253 Sum_probs=233.0
Q ss_pred CceEEEEecCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCccccchHHHH
Q 007251 183 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 262 (611)
Q Consensus 183 ~~kV~Ve~~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l 262 (611)
.++++|--.=|.|+|++|+||+++++.+|++||.+|..|++|..+...++.|+.|..-+.
T Consensus 4 ~~~~~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A~-------------------- 63 (558)
T COG0143 4 MKKILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAE-------------------- 63 (558)
T ss_pred CCcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCeEEEEeccCCCCCHHHHHHH--------------------
Confidence 468999899999999999999999999999999999999999999988888875543221
Q ss_pred HHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHhcCCeeeecc---cccccCcHHHHH
Q 007251 263 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKG---ESFYNPYIPGVI 339 (611)
Q Consensus 263 ~~~y~~~~~~~~~d~~~~~~a~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~LgV~f~~~~---Es~y~~~v~~vi 339 (611)
+. .. +| +++|+...+.|+++++.|||+||.+. +..|.+.+++++
T Consensus 64 --------~~-g~------------------tP------~el~d~~~~~~~~~~~~l~IsfD~F~rTt~~~h~~~vq~~f 110 (558)
T COG0143 64 --------KE-GI------------------TP------QELVDKNHEEFKELFKALNISFDNFIRTTSPEHKELVQEFF 110 (558)
T ss_pred --------Hc-CC------------------CH------HHHHHHHHHHHHHHHHHhCCcccccccCCCHHHHHHHHHHH
Confidence 10 01 22 46788888899999999999997653 356778899999
Q ss_pred HHHHhCCCceeec--ccEEEecc---------C------------C---------C-----CCeEEEccCC------ccc
Q 007251 340 DELSKQGLVEESQ--GARVIFIE---------G------------V---------N-----IPLIIVKSDG------GFN 376 (611)
Q Consensus 340 ~~L~~~G~~~e~d--Ga~~~~~~---------g------------~---------~-----~d~Vl~ksDG------~~t 376 (611)
+.|.++|++|+.+ |.+|...+ | | . .|+-+ .+.+ +..
T Consensus 111 ~~L~~~G~I~~~~~~~~Yc~~~e~fl~dr~v~g~cp~cg~~~arGD~Ce~Cg~~~~P~~l~~p~~~-i~g~~p~~r~~~h 189 (558)
T COG0143 111 LKLYENGDIYLREYEGLYCVSCERFLPDRYVEGTCPKCGGEDARGDQCENCGRTLDPTELINPVCV-ISGATPEVREEEH 189 (558)
T ss_pred HHHHHCCCEeccceeeeEcccccccccchheeccCCCcCccccCcchhhhccCcCCchhcCCCeeE-eeCCCccccccee
Confidence 9999999999753 66655432 1 0 0 12111 1222 223
Q ss_pred ccCcchh-H-----HHhh-----------------h-----h---------cc------CCCeEEEEEeCCccccHHHH-
Q 007251 377 YASTDLA-A-----LWYR-----------------L-----N---------EE------KAEWIIYVTDVGQQLHFDMV- 412 (611)
Q Consensus 377 Y~t~DiA-~-----~~~r-----------------~-----~---------~~------~~d~iIyV~g~dq~~hf~~l- 412 (611)
|+.+ +. + .+++ + + .| ..+++||||-....+|...+
T Consensus 190 yFf~-L~~~~~~L~~~~~~~~~~~~p~~~~ne~~~~i~~GL~d~~IsR~~~~WGipvP~~p~kv~YVWfDAligYisa~~ 268 (558)
T COG0143 190 YFFR-LSKFQDKLLEWYESNPDFIWPANRRNEVLNFLKEGLKDLSITRTDLDWGIPVPGDPGKVIYVWFDALIGYISALG 268 (558)
T ss_pred EEEE-HHHhHHHHHHHHHhCccccCChHHHHHHHHHHHccCcccceecCCCCCCccCCCCCCCEEEEeeccHHHHHHHhc
Confidence 3321 11 0 0000 0 0 01 24566666644433333222
Q ss_pred -------------------------------------H-HHHHHcCCCCCCCCCCCcEEEEeeeeEEcCCCceeeeccCC
Q 007251 413 -------------------------------------F-SAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSE 454 (611)
Q Consensus 413 -------------------------------------~-~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~dG~kmSkR~G~ 454 (611)
+ +.+...|.. .+.++ +.+|+++ .+|+|||||+||
T Consensus 269 ~~~~~~~~~~~~~~W~~~~~e~vhfIGKDii~FHav~wPamL~~~~~~-----lP~~i--~ahg~l~-~~G~KmSKSrG~ 340 (558)
T COG0143 269 ELAEIGDDEDFKKFWPADDTELVHFIGKDIIRFHAVYWPAMLMAAGLP-----LPTRI--FAHGFLT-LEGQKMSKSRGN 340 (558)
T ss_pred chhccCChHHHHhhCCCCCceEEEEeccccCcchhhHHHHHHHhCCCC-----CCCEE--EeeeeEE-ECCccccccCCc
Confidence 2 112333331 11111 2568877 567799999999
Q ss_pred cccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhcCcchhhhhhccCCC-CCcccccccccccc-cCChHHHHHH
Q 007251 455 VVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNR-LTNYTFSFDQMLND-KGNTAVYLLY 532 (611)
Q Consensus 455 ~v~l~dLldea~~~a~~~~~~r~~~~~~~~~e~~~~a~~vg~~avRy~~L~~~~-~~~~~Fd~d~~~~~-~gnt~~ylqY 532 (611)
+|.+.+++++ +|+|++|||+++..+ .+|.+|+|+.+.+. |.+.++-+++
T Consensus 341 ~V~~~~~~~~-----------------------------~~~D~lRYyL~~~~p~~~D~dFs~~~f~~rvN~dL~n~lgN 391 (558)
T COG0143 341 VVDPDELLEQ-----------------------------YGVDALRYYLARELPEGSDGDFSWEDFVERVNADLANKLGN 391 (558)
T ss_pred EEeHHHHHHH-----------------------------cCchHhHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999 799999999999987 68999999999885 5565555555
Q ss_pred HHHHHHHHHHHhCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhchhhcc
Q 007251 533 AHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNC 608 (611)
Q Consensus 533 a~aRi~SIlrKa~~~~~~~~~~~~~~l~~~~e~~L~~~l~~fp~~v~~a~~~~~P~~l~~yL~~La~~fn~fY~~~ 608 (611)
-.+|+.|++.|...+.. +.... ...+.+.+++..+....+.+.++++.++.+++++-+++|+...|+|+++.
T Consensus 392 l~~R~~~fi~k~~~g~v--p~~~~--~~~~~d~~~~~~~~~~~~~~~~~~e~~~~~~Al~~i~~l~~~~N~Yi~~~ 463 (558)
T COG0143 392 LANRTLGFINKYFDGVV--PAAGA--PDLEEDEELLALAREALEAVAEAMEKYEFRKALEEIMALASRANKYIDEQ 463 (558)
T ss_pred HHHHHHHHHHhccCCcC--Ccccc--ccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcC
Confidence 55899999999865431 11111 11256778999999999999999999999999999999999999999764
No 26
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=99.95 E-value=5.5e-26 Score=260.89 Aligned_cols=326 Identities=16% Similarity=0.164 Sum_probs=225.8
Q ss_pred ceEEEEecCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCccccchHHHHH
Q 007251 184 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQ 263 (611)
Q Consensus 184 ~kV~Ve~~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~ 263 (611)
++++|--.=|+|+|++||||+|+.+++|+++|.+|..|++|......+|+|..+..-+.
T Consensus 4 ~~~~it~~~py~ng~~HiGH~~~~~~aDv~~R~~r~~G~~v~~~~g~D~~g~~i~~~A~--------------------- 62 (648)
T PRK12267 4 KTFYITTPIYYPNGKPHIGHAYTTIAADALARYKRLQGYDVFFLTGTDEHGQKIQQAAE--------------------- 62 (648)
T ss_pred CCEEEeeCCCCCCCCcccccchHHHHHHHHHHHHHhcCCceEeecCCCCcchHHHHHHH---------------------
Confidence 57888889999999999999999999999999999999999999999999875432110
Q ss_pred HHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHhcCCeeeec-cc--ccccCcHHHHHH
Q 007251 264 EFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEK-GE--SFYNPYIPGVID 340 (611)
Q Consensus 264 ~~y~~~~~~~~~d~~~~~~a~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~LgV~f~~~-~E--s~y~~~v~~vi~ 340 (611)
+. .. + .+++++.+.+.|+++|++|||.||++ .+ ..|.+.++++++
T Consensus 63 -------~~-g~------------------~------~~e~~d~~~~~fk~~l~~lgI~~D~f~rTt~~~h~~~v~~~~~ 110 (648)
T PRK12267 63 -------KA-GK------------------T------PQEYVDEISAGFKELWKKLDISYDKFIRTTDERHKKVVQKIFE 110 (648)
T ss_pred -------Hc-CC------------------C------HHHHHHHHHHHHHHHHHHcCCCCCCCeeCCCHHHHHHHHHHHH
Confidence 00 00 1 13578888999999999999999754 33 346678999999
Q ss_pred HHHhCCCceeec--ccEEEeccCC---------------CCCeEEEccCCcccccC------------------------
Q 007251 341 ELSKQGLVEESQ--GARVIFIEGV---------------NIPLIIVKSDGGFNYAS------------------------ 379 (611)
Q Consensus 341 ~L~~~G~~~e~d--Ga~~~~~~g~---------------~~d~Vl~ksDG~~tY~t------------------------ 379 (611)
.|.++|++|+.+ |.+|..++.. ..+.+.+.++ .|+.
T Consensus 111 ~L~~kG~IY~~~~~~~yc~~~~~~l~~~~l~~~~~c~~cg~~~e~~~~~---~~f~~l~~~~~~l~~~~~~~~~~~~p~~ 187 (648)
T PRK12267 111 KLYEQGDIYKGEYEGWYCVSCETFFTESQLVDGGKCPDCGREVELVKEE---SYFFRMSKYQDRLLEYYEENPDFIQPES 187 (648)
T ss_pred HHHHCCCEEEeeEEEeecCCCCccCChHHhccCCcCCCCCCcCeEEecc---eEEEEcHHHHHHHHHHHhhCCcccCCHH
Confidence 999999999753 5554433200 0011111100 1110
Q ss_pred --------------cchhHHHhhhhccC------CCeEEEE--------------------------------EeCCccc
Q 007251 380 --------------TDLAALWYRLNEEK------AEWIIYV--------------------------------TDVGQQL 407 (611)
Q Consensus 380 --------------~DiA~~~~r~~~~~------~d~iIyV--------------------------------~g~dq~~ 407 (611)
+|++-...++ .|| .+++||| .|.|+..
T Consensus 188 ~~~~~~~~~l~~~l~D~~ISR~~~-~WGipvP~~~~~v~yVWfDA~~~y~s~~~~~~~~~~~~~~~wp~~~~~~GkDii~ 266 (648)
T PRK12267 188 RKNEMINNFIKPGLEDLSISRTSF-DWGIPVPFDPKHVVYVWIDALLNYITALGYGSDDDELFKKFWPADVHLVGKDILR 266 (648)
T ss_pred HHHHHHHHHhhCCCCCcccCCCCC-CcceECCCCCCCEEEEcccchHHHHHHcCCCCCCchHHHhhcccceEEEeeeecc
Confidence 0111000000 011 2355555 4444433
Q ss_pred cHHHHH-HHHHHcCCCCCCCCCCCcEEEEeeeeEEcCCCceeeeccCCcccHHHHHHHHHHHHHHHHHHhcCCCCCCHHH
Q 007251 408 HFDMVF-SAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEE 486 (611)
Q Consensus 408 hf~~l~-~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~dG~kmSkR~G~~v~l~dLldea~~~a~~~~~~r~~~~~~~~~e 486 (611)
+..-++ .++.++|+.+ .. ..+.+|+++. +|+|||||+||+|++.|+++.
T Consensus 267 fH~i~wpa~l~~~~~~~-----p~--~v~~hg~l~~-eg~KMSKS~GN~i~p~d~l~~---------------------- 316 (648)
T PRK12267 267 FHAIYWPIMLMALGLPL-----PK--KVFAHGWWLM-KDGKMSKSKGNVVDPEELVDR---------------------- 316 (648)
T ss_pred hhHHHHHHHHHhCCCCC-----Cc--EEEecceEEE-CCceecccCCcccCHHHHHHH----------------------
Confidence 222222 4456677642 22 2234588875 689999999999999999998
Q ss_pred HHHHHhhcCcchhhhhhccCC-CCCcccccccccccc-cCChHHHHHHHHHHHHHHHHHhCCChhhhhhcCCCCCCCHHH
Q 007251 487 LEQTAEAVGYGAAKYFDLKNN-RLTNYTFSFDQMLND-KGNTAVYLLYAHARICSIIRKSGKDIEELKKTGSLVLDHADE 564 (611)
Q Consensus 487 ~~~~a~~vg~~avRy~~L~~~-~~~~~~Fd~d~~~~~-~gnt~~ylqYa~aRi~SIlrKa~~~~~~~~~~~~~~l~~~~e 564 (611)
+|+|++|||+++.. ..+|.+|+|+.+.+. +.+.+.-+.+...|+.+++.+...+. ++. ...+ .+.+
T Consensus 317 -------ygaD~lR~~L~~~~~~~~D~~fs~~~~~~~~n~~l~~~lgNl~~R~~~~~~~~~~~~--~p~--~~~~-~~~D 384 (648)
T PRK12267 317 -------YGLDALRYYLLREVPFGSDGDFSPEALVERINSDLANDLGNLLNRTVAMINKYFDGE--IPA--PGNV-TEFD 384 (648)
T ss_pred -------cCCcHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCc--CCC--CCCC-chhh
Confidence 79999999999764 578999999998663 44445556667789988887753221 111 0111 3456
Q ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhchhhcc
Q 007251 565 RALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNC 608 (611)
Q Consensus 565 ~~L~~~l~~fp~~v~~a~~~~~P~~l~~yL~~La~~fn~fY~~~ 608 (611)
++|+..+..+.+.+.+++++++++.+++-+++++...|.|.+.+
T Consensus 385 ~~ll~~l~~~~~~v~~~~e~~~~~~al~~i~~~~~~~N~Yi~~~ 428 (648)
T PRK12267 385 EELIALAEETLKNYEELMEELQFSRALEEVWKLISRANKYIDET 428 (648)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC
Confidence 78999999999999999999999999999999999999998765
No 27
>PLN02224 methionine-tRNA ligase
Probab=99.94 E-value=2.1e-25 Score=251.85 Aligned_cols=329 Identities=16% Similarity=0.224 Sum_probs=225.7
Q ss_pred CCCceEEEEecCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCccccchHH
Q 007251 181 LRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIG 260 (611)
Q Consensus 181 ~~~~kV~Ve~~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~i~ 260 (611)
+.+++++|.-.=|+|+|++||||+|+++++|+++|.++..||+|.....++|+|.++..-+..
T Consensus 66 ~~~~~~~ittp~pY~NG~~HiGHa~~~~~aDviaR~~r~~G~~V~fv~G~DehG~kI~~~A~~----------------- 128 (616)
T PLN02224 66 DEADTFVLTTPLYYVNAPPHMGSAYTTIAADSIARFQRLLGKKVIFITGTDEHGEKIATSAAA----------------- 128 (616)
T ss_pred CCCCeEEEeCCCCCCCCCCchhccHHHHHHHHHHHHHHhcCCceEEecCcCCcchHHHHHHHH-----------------
Confidence 567789998888899999999999999999999999999999999999999999876533210
Q ss_pred HHHHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHhcCCeeeec---ccccccCcHHH
Q 007251 261 ELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEK---GESFYNPYIPG 337 (611)
Q Consensus 261 ~l~~~y~~~~~~~~~d~~~~~~a~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~LgV~f~~~---~Es~y~~~v~~ 337 (611)
. .. +| +++|+.+...|++.+++|||.+|.+ .+..|...+++
T Consensus 129 -----------~-g~------------------~p------~e~~~~~~~~~~~~~~~l~I~~D~f~rTt~~~h~~~vq~ 172 (616)
T PLN02224 129 -----------N-GR------------------NP------PEHCDIISQSYRTLWKDLDIAYDKFIRTTDPKHEAIVKE 172 (616)
T ss_pred -----------c-CC------------------Ch------HHHHHHHHHHHHHHHHHcCCCCCcCeeCCCHHHHHHHHH
Confidence 0 00 11 2456666778899999999999654 24467778999
Q ss_pred HHHHHHhCCCceeec--ccEEEeccC--CC-------------CCeEEEccCCcccccCc--------------------
Q 007251 338 VIDELSKQGLVEESQ--GARVIFIEG--VN-------------IPLIIVKSDGGFNYAST-------------------- 380 (611)
Q Consensus 338 vi~~L~~~G~~~e~d--Ga~~~~~~g--~~-------------~d~Vl~ksDG~~tY~t~-------------------- 380 (611)
++..|.++|++|+.+ |.+|..++- ++ .+.+++..+ .|+.+
T Consensus 173 ~f~~L~~~G~Iy~~~~~~~yc~~ce~f~~~~~l~~~~~~~~~~~~~~~~~e~---~~ff~Ls~~~~~L~~~~~~~~~~~~ 249 (616)
T PLN02224 173 FYARVFANGDIYRADYEGLYCVNCEEYKDEKELLENNCCPVHQMPCVARKED---NYFFALSKYQKPLEDILAQNPRFVQ 249 (616)
T ss_pred HHHHHHHCCCEEEeeeeeeecCCCCCCCCHHHHcCCCCCCCCCCcceEEecc---eEEEEhHHHHHHHHHHHHhCCCccC
Confidence 999999999999754 555543320 00 010111100 11110
Q ss_pred -----------------chhHHHhhhhccC------CCeEEEE-----------------------------------Ee
Q 007251 381 -----------------DLAALWYRLNEEK------AEWIIYV-----------------------------------TD 402 (611)
Q Consensus 381 -----------------DiA~~~~r~~~~~------~d~iIyV-----------------------------------~g 402 (611)
|++-..... .|| .+++||| .|
T Consensus 250 p~~~~~~~~~~l~~gL~d~~ISR~~~-~WGIpvP~~~~~viYVWfDAl~~Yls~~~~~~~~~~~~~~~~~~w~~~v~~iG 328 (616)
T PLN02224 250 PSYRLNEVQSWIKSGLRDFSISRALV-DWGIPVPDDDKQTIYVWFDALLGYISALTEDNKQQNLETAVSFGWPASLHLIG 328 (616)
T ss_pred CHHHHHHHHHHHhcCCCCccccCCCC-CCceECCCCCCcEEEEehhhHHHHHHHhcccccccccchhhccCCCcceEEEe
Confidence 000000000 011 2344454 44
Q ss_pred CCccccHHHHH-HHHHHcCCCCCCCCCCCcEEEEeeeeEEcCCCceeeeccCCcccHHHHHHHHHHHHHHHHHHhcCCCC
Q 007251 403 VGQQLHFDMVF-SAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKE 481 (611)
Q Consensus 403 ~dq~~hf~~l~-~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~dG~kmSkR~G~~v~l~dLldea~~~a~~~~~~r~~~~~ 481 (611)
.|...+...++ +++.++|+. ++..+. .+|++. .+|+|||||+||+|.+.|++++
T Consensus 329 KDii~fH~i~wpa~l~~~g~~-----~P~~i~--~~g~l~-~eG~KMSKS~GN~i~p~e~l~~----------------- 383 (616)
T PLN02224 329 KDILRFHAVYWPAMLMSAGLE-----LPKMVF--GHGFLT-KDGMKMGKSLGNTLEPFELVQK----------------- 383 (616)
T ss_pred ecccccHHHHHHHHHHHCCCC-----CCcEEE--ecccEe-cCCccccccCCccCCHHHHHHH-----------------
Confidence 44433222222 233456662 333333 347765 7899999999999999999998
Q ss_pred CCHHHHHHHHhhcCcchhhhhhccCCC-CCcccccccccccc-cCChHHHHHHHHHHHHHHHHHhCCChhhhhhcCCCCC
Q 007251 482 WTEEELEQTAEAVGYGAAKYFDLKNNR-LTNYTFSFDQMLND-KGNTAVYLLYAHARICSIIRKSGKDIEELKKTGSLVL 559 (611)
Q Consensus 482 ~~~~e~~~~a~~vg~~avRy~~L~~~~-~~~~~Fd~d~~~~~-~gnt~~ylqYa~aRi~SIlrKa~~~~~~~~~~~~~~l 559 (611)
+|+|++|||+++..+ .++.+|+++.+.+. +.+.+.-+.+...|+.++..+...+. ++. + ...
T Consensus 384 ------------ygaD~~R~yLl~~~p~~~d~~fs~~~~~~~~NseLan~lgNll~R~l~~~~k~~~~~--~~~-~-~~~ 447 (616)
T PLN02224 384 ------------FGPDAVRYFFLREVEFGNDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKKNCEST--LVE-D-STV 447 (616)
T ss_pred ------------cCcHHHHHHHHhcCCCcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--CCC-c-ccc
Confidence 799999999999866 68899999987653 44455555566689888888764321 111 1 011
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhchhhcc
Q 007251 560 DHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNC 608 (611)
Q Consensus 560 ~~~~e~~L~~~l~~fp~~v~~a~~~~~P~~l~~yL~~La~~fn~fY~~~ 608 (611)
.+.+.+|+..+....+.+.+++++++.+.+++.+++++...|.|.+.+
T Consensus 448 -~~~d~~l~~~l~~li~~v~~~me~~~~~~Al~~i~el~~~~N~Yi~~~ 495 (616)
T PLN02224 448 -AAEGVPLKDTVEKLVEKAQTNYENLSLSSACEAVLEIGNAGNTYMDQR 495 (616)
T ss_pred -ccccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhC
Confidence 223456899999999999999999999999999999999999998865
No 28
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=99.92 E-value=5.2e-24 Score=224.17 Aligned_cols=253 Identities=17% Similarity=0.145 Sum_probs=178.1
Q ss_pred eEEEEecCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCccccchHHHHHH
Q 007251 185 KAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQE 264 (611)
Q Consensus 185 kV~Ve~~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~ 264 (611)
|.+|...-|||+|++||||+|+.++.|+++|.++..||+|.....++|.|..+..-+... +..
T Consensus 1 ~~~i~~~pP~~~g~~HiGH~~~~i~~D~i~R~~r~~G~~v~~~~g~D~~g~~i~~~a~~~----~~~------------- 63 (312)
T cd00668 1 KFYVTTPPPYANGSLHLGHALTHIIADFIARYKRMRGYEVPFLPGWDTHGLPIELKAERK----GGR------------- 63 (312)
T ss_pred CEEEecCCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCCCCCccCCCCHHHHHHHHHh----cCc-------------
Confidence 357788999999999999999999999999999999999999999988887655432211 000
Q ss_pred HHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHhcCCeeeec-----ccccccCcHHHHH
Q 007251 265 FYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEK-----GESFYNPYIPGVI 339 (611)
Q Consensus 265 ~y~~~~~~~~~d~~~~~~a~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~LgV~f~~~-----~Es~y~~~v~~vi 339 (611)
.....+ ..+..+.++++++.+.+.|++++++|||.++|. .+..|.+.+.+++
T Consensus 64 -------~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~l~~lgI~~Dw~~~~~T~~~~~~~~v~~~f 120 (312)
T cd00668 64 -------KKKTIW----------------IEEFREDPKEFVEEMSGEHKEDFRRLGISYDWSDEYITTEPEYSKAVELIF 120 (312)
T ss_pred -------cccccc----------------HHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCCeECCCHHHHHHHHHHH
Confidence 000111 012234556788999999999999999999843 1235667899999
Q ss_pred HHHHhCCCcee------ecccEEEecc------------C----------------CCCCeEEEccC--C-----ccccc
Q 007251 340 DELSKQGLVEE------SQGARVIFIE------------G----------------VNIPLIIVKSD--G-----GFNYA 378 (611)
Q Consensus 340 ~~L~~~G~~~e------~dGa~~~~~~------------g----------------~~~d~Vl~ksD--G-----~~tY~ 378 (611)
+.|.++|++|+ .+..+|++++ + ...|..|-|.- | -.+|.
T Consensus 121 ~~L~~~G~iY~~~~~v~~~~~~f~~~~~l~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~d~~isR~~~WG~~~P~~~i~~ 200 (312)
T cd00668 121 SRLYEKGLIYRGTHPVRITEQWFFDMPKFKEKLLKALRRGKIVPEHVKNRMEAWLESLLDWAISRQRYWGTPLPEDVFDV 200 (312)
T ss_pred HHHHHCCCEEeecceeEeeeeEEEEcHHHHHHHHHHHhcCCcCChHHHHHHHHHHhCCCCeEEeccCCCCCcCCcccccc
Confidence 99999999999 4555666552 1 11255554431 2 22333
Q ss_pred Ccchh--HHH---hhh-----hc-cCCCeEEEEEeCCcc-ccHHHHHHHHHHcCCCCCCCCCCCcEEEEeeeeEEcCCCc
Q 007251 379 STDLA--ALW---YRL-----NE-EKAEWIIYVTDVGQQ-LHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGK 446 (611)
Q Consensus 379 t~DiA--~~~---~r~-----~~-~~~d~iIyV~g~dq~-~hf~~l~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~dG~ 446 (611)
--|-+ |.. +.. .. +.. -|++.|.||. .|+....+++.++|... ++. .|+.+|+|+..+|+
T Consensus 201 Wfds~~~~~~~~~~~~~~~~~~~~~~~--di~~~G~D~~~~h~~~~~~~~~~~~~~~---~~~---~~~~~g~~~~~~g~ 272 (312)
T cd00668 201 WFDSGIGPLGSLGYPEEKEWFKDSYPA--DWHLIGKDILRGWANFWITMLVALFGEI---PPK---NLLVHGFVLDEGGQ 272 (312)
T ss_pred hhhccHHHHHHcCCCccchhhhhcCCc--eEEEEecchhhhHHHHHHHHHHHhcCCC---Ccc---eeEECcEEEcCCCc
Confidence 22211 211 110 00 123 4889999998 78888888888877531 122 44456889988879
Q ss_pred eeeeccCCcccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhcCcchhhhhhccCCC-CCcccc
Q 007251 447 RLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNR-LTNYTF 514 (611)
Q Consensus 447 kmSkR~G~~v~l~dLldea~~~a~~~~~~r~~~~~~~~~e~~~~a~~vg~~avRy~~L~~~~-~~~~~F 514 (611)
|||||+||+|+++|++++ +|.||+||++++..+ .+|.+|
T Consensus 273 KmSKS~gn~v~~~d~~~~-----------------------------~~~da~R~~l~~~~~~~~d~~~ 312 (312)
T cd00668 273 KMSKSKGNVIDPSDVVEK-----------------------------YGADALRYYLTSLAPYGDDIRL 312 (312)
T ss_pred cccccCCCcCCHHHHHHH-----------------------------cCcHHHHHHHHhcCCccCCCCC
Confidence 999999999999999998 699999999998874 666655
No 29
>PLN02610 probable methionyl-tRNA synthetase
Probab=99.91 E-value=9.1e-23 Score=236.70 Aligned_cols=333 Identities=13% Similarity=0.131 Sum_probs=221.9
Q ss_pred CceEEEEecCCCCCCCCcchhhhHH-HHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCccccchHHH
Q 007251 183 VKKAVVDFSSPNIAKEMHVGHLRST-IIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 261 (611)
Q Consensus 183 ~~kV~Ve~~SpNp~kplHvGHlRsa-iiGDsLariL~~~Gy~V~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~ 261 (611)
.++++|--.=|+|+|++||||++++ +..|++||.+|..|++|....-.++.|+.+..-+.
T Consensus 16 ~~~~~ITt~~pY~Ng~~HlGH~~~~~l~aDv~aRy~r~~G~~v~f~~GtDehG~~i~~~A~------------------- 76 (801)
T PLN02610 16 KRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKAL------------------- 76 (801)
T ss_pred CCCEEEeCCCCCCCCCcccchhhhhHHHHHHHHHHHHhCCCceEecccccCCcHHHHHHHH-------------------
Confidence 4579999999999999999999975 66899999999999999999988888875432210
Q ss_pred HHHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHhcCCeeeecc---cccccCcHHHH
Q 007251 262 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKG---ESFYNPYIPGV 338 (611)
Q Consensus 262 l~~~y~~~~~~~~~d~~~~~~a~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~LgV~f~~~~---Es~y~~~v~~v 338 (611)
+. .. .| +++|+.+.+.|++++++|||.||.+. +..|...++++
T Consensus 77 ---------~~-g~------------------~p------~e~~d~~~~~~~~~~~~l~i~~D~f~rT~~~~h~~~vq~~ 122 (801)
T PLN02610 77 ---------EE-NC------------------TP------KEICDKYHAIHKEVYDWFDISFDKFGRTSTPQQTEICQAI 122 (801)
T ss_pred ---------Hc-CC------------------CH------HHHHHHHHHHHHHHHHHcCCccccCccCCCHHHHHHHHHH
Confidence 00 01 11 45677778889999999999997552 34567789999
Q ss_pred HHHHHhCCCceeec--ccEEEecc---------C--------------C----------------------CCCeEEEcc
Q 007251 339 IDELSKQGLVEESQ--GARVIFIE---------G--------------V----------------------NIPLIIVKS 371 (611)
Q Consensus 339 i~~L~~~G~~~e~d--Ga~~~~~~---------g--------------~----------------------~~d~Vl~ks 371 (611)
+..|.++|++|+.. |.+|..++ | + ..+.+++.+
T Consensus 123 f~~L~~~G~Iy~~~~~~~yc~~~e~fl~d~~v~G~CP~~~C~~~~a~Gd~Ce~Cg~~~~p~eLi~p~c~~~g~~~~~~~~ 202 (801)
T PLN02610 123 FKKLMENNWLSENTMQQLYCDTCQKFLADRLVEGTCPTEGCNYDSARGDQCEKCGKLLNPTELIDPKCKVCKNTPRIRDT 202 (801)
T ss_pred HHHHHHCCCEEEeeEEEeecCCCCCCcchHHhcCcCCccccCccccccchhhhccccCChhhhcCCcccCCCCcceEEEc
Confidence 99999999999743 44433221 1 0 000011100
Q ss_pred CCcccccCc--chh----HHH--------h---------hh-----h--------ccC--------CCeEEEE-------
Q 007251 372 DGGFNYAST--DLA----ALW--------Y---------RL-----N--------EEK--------AEWIIYV------- 400 (611)
Q Consensus 372 DG~~tY~t~--DiA----~~~--------~---------r~-----~--------~~~--------~d~iIyV------- 400 (611)
..|+.+ ..+ -++ | ++ . .|| .+++|||
T Consensus 203 ---~~~ff~Ls~~~~~L~~~~~~~~~~~~~~~n~~~~~~~~l~~gL~d~~IsR~~~WGipvP~~~~~~~v~YVWfDAl~~ 279 (801)
T PLN02610 203 ---DHLFLELPLLKDKLVEYINETSVAGGWSQNAIQTTNAWLRDGLKPRCITRDLKWGVPVPLEKYKDKVFYVWFDAPIG 279 (801)
T ss_pred ---ceEEEEhHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhCCCCCcceeeecCCcccCCCCCCCCcEEEEehhhHHH
Confidence 111110 000 000 0 00 0 010 2355555
Q ss_pred ---------------------------EeCCccccHHHHH-HHHHHcCCCCCCCCCCCcEEEEeeeeEEcCCCceeeecc
Q 007251 401 ---------------------------TDVGQQLHFDMVF-SAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRF 452 (611)
Q Consensus 401 ---------------------------~g~dq~~hf~~l~-~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~dG~kmSkR~ 452 (611)
+|.|-..++..++ +++.++|... +... ..+.+|+++ .+|+|||||+
T Consensus 280 Yis~~~~~~~~~~~~W~~~~~~~~~hfiGKDi~~fH~i~wPa~L~a~g~~~---~~p~--~i~~~g~l~-~eG~KMSKS~ 353 (801)
T PLN02610 280 YVSITACYTPEWEKWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENW---TMMK--TISVTEYLN-YEGGKFSKSK 353 (801)
T ss_pred HHHHHhhhhhHHHHhcCCcccceEEEEEeeecchhHHHHHHHHHHhCCCCc---CCCC--EEEeccCEe-cCCceecCcC
Confidence 4444322222333 3345556310 0112 223457776 6889999999
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhcCcchhhhhhccCCC-CCcccccccccccc-cCChHHHH
Q 007251 453 SEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNR-LTNYTFSFDQMLND-KGNTAVYL 530 (611)
Q Consensus 453 G~~v~l~dLldea~~~a~~~~~~r~~~~~~~~~e~~~~a~~vg~~avRy~~L~~~~-~~~~~Fd~d~~~~~-~gnt~~yl 530 (611)
||+|.+.++++.. +|+|++|||+++..+ .+|.+|+|+.+.+. |.+.+.-+
T Consensus 354 GNvV~p~~~i~~~----------------------------yg~D~lRyyLl~~~p~~~D~dFs~~~f~~~~NsdL~n~l 405 (801)
T PLN02610 354 GVGVFGNDAKDTN----------------------------IPVEVWRYYLLTNRPEVSDTLFTWADLQAKLNSELLNNL 405 (801)
T ss_pred CcccCHHHHHhcc----------------------------CCchHhHHHhhhcCCCCCCCcCCHHHHHHHHHHHHHHHH
Confidence 9999999999841 699999999999876 68999999998875 55566655
Q ss_pred HHHHHHHHHHHHH----hCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhchhh
Q 007251 531 LYAHARICSIIRK----SGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYS 606 (611)
Q Consensus 531 qYa~aRi~SIlrK----a~~~~~~~~~~~~~~l~~~~e~~L~~~l~~fp~~v~~a~~~~~P~~l~~yL~~La~~fn~fY~ 606 (611)
.+-..|+.+++.+ ...+. ++... .....+.+.+|+..+.+..+.+.+++++++++.+++-+++++...|+|.+
T Consensus 406 GNlv~R~~~~i~~~~~k~~~g~--vp~~~-~~~~~~~d~~Ll~~~~~~i~~v~~~me~~~~~~Al~~I~~l~~~~NkYIe 482 (801)
T PLN02610 406 GNFINRVLSFIAKPPGAGYGSV--IPDAP-GAESHPLTKKLAEKVGKLVEQYVEAMEKVKLKQGLKTAMSISSEGNAYLQ 482 (801)
T ss_pred HHHHHHHHHHHHhhhhhccCCc--CCCcc-ccccchhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 5666899999884 33221 11100 00012335679999999999999999999999999999999999999998
Q ss_pred cc
Q 007251 607 NC 608 (611)
Q Consensus 607 ~~ 608 (611)
..
T Consensus 483 ~~ 484 (801)
T PLN02610 483 ES 484 (801)
T ss_pred hc
Confidence 64
No 30
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=3.2e-23 Score=219.41 Aligned_cols=328 Identities=16% Similarity=0.187 Sum_probs=220.0
Q ss_pred CCCceEEEEecCCCCCCCCcchhhhHHHHHHHHHHHHH-HCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCccccchH
Q 007251 181 LRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLE-FSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAI 259 (611)
Q Consensus 181 ~~~~kV~Ve~~SpNp~kplHvGHlRsaiiGDsLariL~-~~Gy~V~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~i 259 (611)
..+++|-.+.|+|+++..-||||+|++|-.|.|.|+|+ +.||+|+.+.+|+|...
T Consensus 51 ~~~~~v~wY~CGpTvYD~SHmGHArsYVsfDIlrRiL~dyfgy~V~~vmNiTDVDD------------------------ 106 (586)
T KOG2007|consen 51 NNGNKVTWYICGPTVYDSSHMGHARSYVSFDILRRILRDYFGYDVTFVMNITDVDD------------------------ 106 (586)
T ss_pred CCCCeEEEEEecCcccchhhhhhhhhhhhHHHHHHHHHHHcCcceEEEecccchhH------------------------
Confidence 35778999999999999999999999999999999999 99999999999999653
Q ss_pred HHHHHHHHHHh-cccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHhcCCee-eeccc-ccccCcHH
Q 007251 260 GELQEFYRRSK-NRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDL-EEKGE-SFYNPYIP 336 (611)
Q Consensus 260 ~~l~~~y~~~~-~~~~~d~~~~~~a~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~LgV~f-~~~~E-s~y~~~v~ 336 (611)
+++.+++ +.+.+.| ..|.+....+.++|.+++.+|+|-. +..+. |.|.+.|.
T Consensus 107 ----KII~RAr~~~m~e~~---------------------~~l~~~F~~~e~eF~~DM~~LnvLpPtv~tRVSeyvp~II 161 (586)
T KOG2007|consen 107 ----KIIKRARKEEMGEKP---------------------LSLSERFCYYEEEFLQDMAALNVLPPTVQTRVSEYVPQII 161 (586)
T ss_pred ----HHHHHhhhhhhccch---------------------hhHHHHHHHHHHHHHHHHHHhCCCCCcccchhhhchHHHH
Confidence 2223332 1111111 2232222266789999999999996 65443 88889999
Q ss_pred HHHHHHHhCCCceeecccEEEeccCCC--C------CeEEEccCCccc----ccCcchhHHHhhhh------------cc
Q 007251 337 GVIDELSKQGLVEESQGARVIFIEGVN--I------PLIIVKSDGGFN----YASTDLAALWYRLN------------EE 392 (611)
Q Consensus 337 ~vi~~L~~~G~~~e~dGa~~~~~~g~~--~------d~Vl~ksDG~~t----Y~t~DiA~~~~r~~------------~~ 392 (611)
..|++++++|++|..||.++|++...+ . ...+.-+.|... =-..|.| +||-. ..
T Consensus 162 ~fIqkIIdnG~aY~~dGsVYFdv~kf~~~YgKL~G~~~~~~~gEg~l~ds~KR~p~DFA--LWKAsK~gEP~WeSPWG~G 239 (586)
T KOG2007|consen 162 KFIQKIIDNGYAYAVDGSVYFDVDKFPHSYGKLVGQRKNLQEGEGVLSDSRKRSPADFA--LWKASKPGEPSWESPWGKG 239 (586)
T ss_pred HHHHHHHhCCceeeeCCcEEEecccccchhhhhcCchhhcccCcCccccccCCChhhhh--hhhhcCCCCCCCCCCCCCC
Confidence 999999999999999999999986211 0 001111222111 0123444 44421 12
Q ss_pred CCCeE--------------EEEEeCCccccHHHH-HHHHHHcCCCCCCCCCCCcEEEEeeeeEEcCCCceeeeccCCccc
Q 007251 393 KAEWI--------------IYVTDVGQQLHFDMV-FSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVR 457 (611)
Q Consensus 393 ~~d~i--------------IyV~g~dq~~hf~~l-~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~dG~kmSkR~G~~v~ 457 (611)
.+.|. ++|+|.+-++-|++. .++++.--+.. ++.|...|.|. |.+. .+|.|||||.+|++|
T Consensus 240 RPGWHIECSaMas~~lG~~lDIH~GG~DL~FPHHeNEiAQ~eA~~~-~~~wVnYflHt--GhL~-i~g~KMSKSLkNFiT 315 (586)
T KOG2007|consen 240 RPGWHIECSAMASAILGSQLDIHGGGIDLAFPHHENEIAQSEAAFD-DSQWVNYFLHT--GHLT-INGEKMSKSLKNFIT 315 (586)
T ss_pred CCCceeeeHHHHHHhhccccceecCcccccCCCcccHHHHHHHHhc-CCccceeEEEc--Ceee-eccchhhhhhcccee
Confidence 34444 478888888877753 34443222221 13588999999 5465 568999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhcCcchhhhhhccCCCCCccccccccccc---ccCChHHHHHHHH
Q 007251 458 LVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLN---DKGNTAVYLLYAH 534 (611)
Q Consensus 458 l~dLldea~~~a~~~~~~r~~~~~~~~~e~~~~a~~vg~~avRy~~L~~~~~~~~~Fd~d~~~~---~~gnt~~ylqYa~ 534 (611)
+.|+|+. +.+.++|.++|..+..++++|+-..|.. ++.-...|. |.
T Consensus 316 Ike~Lk~-----------------------------~sp~qLRl~fl~~~wr~~ldYs~s~m~~a~q~e~~~~~ff-~~- 364 (586)
T KOG2007|consen 316 IKEALKK-----------------------------YSPRQLRLAFLLHQWRSPLDYSDSTMEQALQLEKSLNNFF-LD- 364 (586)
T ss_pred HHHHHHh-----------------------------cCHHHHHHHHHHHHhcCcCCchHHHHHHHHHHHHHHHHHH-HH-
Confidence 9999998 6889999999999999999998775543 221111110 00
Q ss_pred HHHHHHHHHhCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HhcchHHHHHHHHHHHHHHhchhh
Q 007251 535 ARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEAL-TNLLPNVVCEYLYNLSEYFTRFYS 606 (611)
Q Consensus 535 aRi~SIlrKa~~~~~~~~~~~~~~l~~~~e~~L~~~l~~fp~~v~~a~-~~~~P~~l~~yL~~La~~fn~fY~ 606 (611)
+ ..+.+.+ . +..-..+.|.+|...+..-...|..|. +++.--.+.+.+.+|....|.|..
T Consensus 365 ~--~al~~~~--~--------~~~~~~~~e~~l~~~~~~t~~~vh~al~d~~dT~~v~~~~~~lvs~~N~~i~ 425 (586)
T KOG2007|consen 365 V--KALLRGA--K--------PFEKLSEKEAELLEDFGKTQTAVHAALCDNFDTPRVMEAIRELVSQGNAYIR 425 (586)
T ss_pred H--HHHHhcc--c--------hhhccChHHHHHHHhhhhHHHHHHHHHHhccccHHHHHHHHHHHhhhhHHHH
Confidence 1 1112111 0 011125667778888777777776664 556666777777788777777664
No 31
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=99.90 E-value=2e-23 Score=219.92 Aligned_cols=240 Identities=18% Similarity=0.173 Sum_probs=168.6
Q ss_pred eEEEEecCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCccccchHHHHHH
Q 007251 185 KAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQE 264 (611)
Q Consensus 185 kV~Ve~~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~ 264 (611)
|++|-..=|+|+|++||||+|+.+++|+++|.++..|++|.....++|+|..+-..+..
T Consensus 1 k~~it~~~Py~ng~~HiGH~~~~v~~Dv~~R~lr~~G~~V~~v~g~Dd~g~~i~~~a~~--------------------- 59 (314)
T cd00812 1 KFYILVMFPYPSGALHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAENAAIK--------------------- 59 (314)
T ss_pred CeEEecCCCCCCCCccccchHHHHHHHHHHHHHHHcCCCcCCCCCcCCCCCHHHHHHHH---------------------
Confidence 46788889999999999999999999999999999999999999999998754322110
Q ss_pred HHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHhcCCeeeecc-----cccccCcHHHHH
Q 007251 265 FYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKG-----ESFYNPYIPGVI 339 (611)
Q Consensus 265 ~y~~~~~~~~~d~~~~~~a~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~LgV~f~~~~-----Es~y~~~v~~vi 339 (611)
. .. + ++++++.+.+.|++++++|||.++|.. ...|...+++++
T Consensus 60 -------~-g~------------------~------~~e~~~~~~~~~~~~~~~lgi~~d~~~~~~t~~~~~~~~v~~~f 107 (314)
T cd00812 60 -------I-GR------------------D------PEDWTEYNIKKMKEQLKRMGFSYDWRREFTTCDPEYYKFTQWLF 107 (314)
T ss_pred -------c-CC------------------C------HHHHHHHHHHHHHHHHHHhccceecccccccCCHHHHHHHHHHH
Confidence 0 00 1 245778888899999999999998632 223455688888
Q ss_pred HHHHhCCCceeecccEEEe---------c--c------------CCC------------CCeEEEcc--CCcc------c
Q 007251 340 DELSKQGLVEESQGARVIF---------I--E------------GVN------------IPLIIVKS--DGGF------N 376 (611)
Q Consensus 340 ~~L~~~G~~~e~dGa~~~~---------~--~------------g~~------------~d~Vl~ks--DG~~------t 376 (611)
..|.++|++|+.++.+++. + + ... .+ +-|. =|.+ .
T Consensus 108 ~~L~~~G~iy~~~~~v~~~~~~~~~f~~l~~~~~~~~l~~~l~~~~~~p~~~~~~~~~~l~--isR~~~wGipvP~~~~i 185 (314)
T cd00812 108 LKLYEKGLAYKKEAPVNWCKLLDQWFLKYSETEWKEKLLKDLEKLDGWPEEVRAMQENWIG--CSRQRYWGTPIPWTDTM 185 (314)
T ss_pred HHHHHCCCEEecCceeeeeCccceEEEEcCcHHHHHHHHHHHHhcCcCCHHHHHHHHHHhe--eeeecCCcCCcCccccc
Confidence 9999999999988766553 2 1 000 00 1111 1322 1
Q ss_pred ccCcchh-----HH----------------Hhhhhcc-CCCeEEEEEeCCc---c-ccHHHHHHHHHHcCCCCCCCCCCC
Q 007251 377 YASTDLA-----AL----------------WYRLNEE-KAEWIIYVTDVGQ---Q-LHFDMVFSAAKRAGWLSADDSTYP 430 (611)
Q Consensus 377 Y~t~DiA-----~~----------------~~r~~~~-~~d~iIyV~g~dq---~-~hf~~l~~~~~~lG~~~~~~~~~~ 430 (611)
|...|-. |. ...+..| ..| |+|+|.|| + .|+....+++..+|+.. ..+..
T Consensus 186 ~~w~ds~~y~~~y~~~~~~~~~~~~~~~~~~~~~~~w~p~d--i~v~G~D~i~~h~~~~~~~~~~l~~~g~~~--~~~~~ 261 (314)
T cd00812 186 ESLSDSTWYYARYTDAHNLEQPYEGDLEFDREEFEYWYPVD--IYIGGKEHAPNHLLYSRFNHKALFDEGLVT--DEPPK 261 (314)
T ss_pred ccccccHHHHHHHHhcccccCcchhhhhhhHHHHHHhCCCe--eeecchhHHHHHHHHHHHHHHHHcCccccc--ccCcH
Confidence 2222211 11 0011112 334 89999998 4 34456667777778510 01233
Q ss_pred cEEEEeeeeEEcCCCceeeeccCCcccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhcCcchhhhhhccCCCCC
Q 007251 431 KASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLT 510 (611)
Q Consensus 431 ~~~Hv~~g~V~~~dG~kmSkR~G~~v~l~dLldea~~~a~~~~~~r~~~~~~~~~e~~~~a~~vg~~avRy~~L~~~~~~ 510 (611)
.+. .+|+|+. +|+|||||+||+|+++|++++ +|.||+||++++..+ +
T Consensus 262 ~~~--~~g~v~~-~g~KmSkS~Gn~v~~~dll~~-----------------------------~~~Da~R~~ll~~~~-~ 308 (314)
T cd00812 262 GLI--VQGMVLL-EGEKMSKSKGNVVTPDEAIKK-----------------------------YGADAARLYILFAAP-P 308 (314)
T ss_pred Hhe--ecceEec-CccccCCcCCCCCCHHHHHHH-----------------------------hCcHHHHHHHHhcCC-c
Confidence 444 4588885 789999999999999999998 599999999999988 9
Q ss_pred cccccc
Q 007251 511 NYTFSF 516 (611)
Q Consensus 511 ~~~Fd~ 516 (611)
+++|||
T Consensus 309 ~~~f~~ 314 (314)
T cd00812 309 DADFDW 314 (314)
T ss_pred CCCCCC
Confidence 999997
No 32
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=99.90 E-value=8.4e-23 Score=215.64 Aligned_cols=240 Identities=17% Similarity=0.237 Sum_probs=165.4
Q ss_pred eEEEEecCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCccccchHHHHHH
Q 007251 185 KAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQE 264 (611)
Q Consensus 185 kV~Ve~~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~ 264 (611)
+++|--.-|+|+|++||||+|+.++.|+++|.++..|++|..+..++|.|..+..-+
T Consensus 1 ~~~it~~~Py~ng~~HlGH~~~~~~~Dv~~R~~r~~G~~V~~~~g~Dd~g~~i~~~a----------------------- 57 (319)
T cd00814 1 KVLITTALPYVNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKA----------------------- 57 (319)
T ss_pred CEEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHhCCCcccccCccCCCCcHHHHHH-----------------------
Confidence 356778889999999999999999999999999999999999999999886543211
Q ss_pred HHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHhcCCeeeec---ccccccCcHHHHHHH
Q 007251 265 FYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEK---GESFYNPYIPGVIDE 341 (611)
Q Consensus 265 ~y~~~~~~~~~d~~~~~~a~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~LgV~f~~~---~Es~y~~~v~~vi~~ 341 (611)
.+. .. + ++++++.+.+.|+++|++|||.||.+ +++.|.+.+.+++++
T Consensus 58 -----~~~-g~------------------~------~~e~~~~~~~~~~~~l~~LgI~~D~~~~tt~~~~~~~v~~i~~~ 107 (319)
T cd00814 58 -----EEE-GV------------------T------PQELCDKYHEIFKDLFKWLNISFDYFIRTTSPRHKEIVQEFFKK 107 (319)
T ss_pred -----HHc-CC------------------C------HHHHHHHHHHHHHHHHHHcCCcCCCCeeCCCHHHHHHHHHHHHH
Confidence 000 00 1 24678899999999999999999643 244577889999999
Q ss_pred HHhCCCceeec-------------------ccEEEecc------------CC-------------------CCCeEEEcc
Q 007251 342 LSKQGLVEESQ-------------------GARVIFIE------------GV-------------------NIPLIIVKS 371 (611)
Q Consensus 342 L~~~G~~~e~d-------------------Ga~~~~~~------------g~-------------------~~d~Vl~ks 371 (611)
|.++|++|+.+ ..++|+++ +. -.|.-+-|.
T Consensus 108 L~ekG~iY~~~~~~~yc~~~~~~l~e~~~~~~~ff~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~l~d~~isR~ 187 (319)
T cd00814 108 LYENGYIYEGEYEGLYCVSCERFLPEWREEEHYFFRLSKFQDRLLEWLEKNPDFIWPENARNEVLSWLKEGLKDLSITRD 187 (319)
T ss_pred HHHCCCEEeeeeeeeECCCCCcEeeEEEeeeeEEEEhHHHHHHHHHHHHhCCccCCCHHHHHHHHHHHhCCCcccCCCcc
Confidence 99999999754 23334432 00 011112221
Q ss_pred -----------CCcccccCcch--hHH------Hhhh-----hccCCCeEEEEEeCCccccHHHHH-HHHHHcCCCCCCC
Q 007251 372 -----------DGGFNYASTDL--AAL------WYRL-----NEEKAEWIIYVTDVGQQLHFDMVF-SAAKRAGWLSADD 426 (611)
Q Consensus 372 -----------DG~~tY~t~Di--A~~------~~r~-----~~~~~d~iIyV~g~dq~~hf~~l~-~~~~~lG~~~~~~ 426 (611)
.|...|.--|. +|. .++. -..+....+++.|.|+..++..++ +++.++|+.
T Consensus 188 ~~~WGipvp~~~~~~~yvWfda~~~y~~~~~~~~~~~~~~~~~~~~~~~~v~~~G~D~~~fh~~~~pa~l~~~~~~---- 263 (319)
T cd00814 188 LFDWGIPVPLDPGKVIYVWFDALIGYISATGYYNEEWGNSWWWKDGWPELVHFIGKDIIRFHAIYWPAMLLGAGLP---- 263 (319)
T ss_pred CcccCeeCCCCCCcEEEEehhhHHHHHHHcccccccccchhhhhcCCCceEEEEeechhhhhHHHHHHHHHhCCCC----
Confidence 12333433331 111 0000 001223578899999876554454 445667763
Q ss_pred CCCCcEEEEeeeeEEcCCCceeeeccCCcccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhcCcchhhhhhccC
Q 007251 427 STYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKN 506 (611)
Q Consensus 427 ~~~~~~~Hv~~g~V~~~dG~kmSkR~G~~v~l~dLldea~~~a~~~~~~r~~~~~~~~~e~~~~a~~vg~~avRy~~L~~ 506 (611)
+...+. .+|+++. +|+|||||+||+|++.|++++ +|+|++||++++.
T Consensus 264 -~~~~~~--~~~~~~~-~g~kmSkS~gn~i~~~~~l~~-----------------------------~~~d~~R~~l~~~ 310 (319)
T cd00814 264 -LPTRIV--AHGYLTV-EGKKMSKSRGNVVDPDDLLER-----------------------------YGADALRYYLLRE 310 (319)
T ss_pred -CCcEee--eeeeEEE-CCeeecccCCcccCHHHHHHH-----------------------------cCchHHHHHHHhc
Confidence 234443 3577875 589999999999999999998 6999999999998
Q ss_pred CC-CCcccc
Q 007251 507 NR-LTNYTF 514 (611)
Q Consensus 507 ~~-~~~~~F 514 (611)
.+ .+|.+|
T Consensus 311 ~~~~~d~~f 319 (319)
T cd00814 311 RPEGKDSDF 319 (319)
T ss_pred CCCCCCCCC
Confidence 76 456655
No 33
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=99.89 E-value=3.7e-22 Score=211.40 Aligned_cols=258 Identities=18% Similarity=0.241 Sum_probs=176.4
Q ss_pred ceEEEEecCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCC-CccccchHHHH
Q 007251 184 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNS-EDANETAIGEL 262 (611)
Q Consensus 184 ~kV~Ve~~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~G~Q~~~l~~~~~~~~~~~-~~~~~~~i~~l 262 (611)
.+++| -|+..|+|++||||+|..+.+|+++|.|+..|++|..++..+|+|. +.++-. ..|+. +.+.|.++..+
T Consensus 19 ~~~~v-~tgi~psG~~HIG~~~e~i~~D~i~R~lr~~G~~v~~v~~~Dd~d~-lrKvp~----~l~~~~~~~~G~pi~~i 92 (353)
T cd00674 19 EKYVV-ASGISPSGHIHIGNFREVITADLVARALRDLGFEVRLIYSWDDYDR-LRKVPP----NVPESYEQYIGMPLSSV 92 (353)
T ss_pred CeEEE-ecCCCCCCCcccCccHHHHHHHHHHHHHHHcCCCEEEEEEEcCCCc-cccccc----chhhHHHHhcCccchhc
Confidence 46777 4556799999999999999999999999999999999999999975 322100 00100 00112222211
Q ss_pred HHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHhcCCeeeecc--cccccCc-HHHHH
Q 007251 263 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKG--ESFYNPY-IPGVI 339 (611)
Q Consensus 263 ~~~y~~~~~~~~~d~~~~~~a~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~LgV~f~~~~--Es~y~~~-v~~vi 339 (611)
. +| .|- -..+++.+...|++.+++|||++++++ |...++. .+.+.
T Consensus 93 p------------~p--------------~g~------~~~~~d~~~~~f~~~l~~lgi~~d~~~~T~~y~~g~~~~~i~ 140 (353)
T cd00674 93 P------------DP--------------FGC------CESYAEHFERPFEESLEKLGIEVEFISQSQMYKSGLYDENIL 140 (353)
T ss_pred h------------hh--------------cCC------CHHHHHHHHHHHHHHHHHcCCeeeeeecCCchhhchHHHHHH
Confidence 0 10 011 125678889999999999999997654 3333544 55666
Q ss_pred HHHHhCCCcee----------ecccEEEe--cc--CCCCCeEEEcc---CCcccccCc-------ch----hHHHhhhhc
Q 007251 340 DELSKQGLVEE----------SQGARVIF--IE--GVNIPLIIVKS---DGGFNYAST-------DL----AALWYRLNE 391 (611)
Q Consensus 340 ~~L~~~G~~~e----------~dGa~~~~--~~--g~~~d~Vl~ks---DG~~tY~t~-------Di----A~~~~r~~~ 391 (611)
..|++++.+.+ .++..-|. ++ |... ..++.- .|+.+|.+. |+ +-.-||+ +
T Consensus 141 ~~L~~~~~I~~i~~~~~~~~~~~~~~P~~p~c~~cg~~~-~~v~~~d~~~~~v~y~c~cG~~g~~~~~~g~~KL~Wr~-d 218 (353)
T cd00674 141 IALEKRDEIMAILNEYRGRELQETWYPFMPYCEKCGKDT-TTVEAYDAKAGTVTYKCECGHEETVDIRTGRGKLTWRV-D 218 (353)
T ss_pred HHHHHCChHHHHHHHhcCCccCCCceeeeeecCCcCcce-eEEEEEeCCCCeEEEEcCCCCEEEEeecCCCcccCCCC-C
Confidence 77888887642 23333332 12 4221 222222 245667542 23 1234554 3
Q ss_pred cCCCe-----EEEEEeCCcccc---HHHHHHHHH-HcCCCCCCCCCCCcEEEEeeeeEEcCCCceeeeccCCcccHHHHH
Q 007251 392 EKAEW-----IIYVTDVGQQLH---FDMVFSAAK-RAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLL 462 (611)
Q Consensus 392 ~~~d~-----iIyV~g~dq~~h---f~~l~~~~~-~lG~~~~~~~~~~~~~Hv~~g~V~~~dG~kmSkR~G~~v~l~dLl 462 (611)
|.+.| -+=++|.||..| |.++.++++ .+|+.+ + .|+.||||+..+|+|||||+||+|+++|+|
T Consensus 219 W~~rW~~l~Vd~E~~GkDh~~~ggs~~~~~~i~~~ilg~~~------P--~~~~ye~V~l~gg~KMSKSkGnvI~~~dll 290 (353)
T cd00674 219 WPMRWAILGVDFEPFGKDHASAGGSYDTGKEIAREIFGGEP------P--VPVMYEFIGLKGGGKMSSSKGNVITPSDWL 290 (353)
T ss_pred chhhhhhcCCCEEeeCccccccccHHHHHHHHHHHHhCCCC------C--eEEEeeeEEeCCCCccCCCCCCcCCHHHHH
Confidence 43332 245799999999 999999998 999853 2 567889999877779999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhcCcchhhhhhccCC-CCCcccccccc
Q 007251 463 DEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNN-RLTNYTFSFDQ 518 (611)
Q Consensus 463 dea~~~a~~~~~~r~~~~~~~~~e~~~~a~~vg~~avRy~~L~~~-~~~~~~Fd~d~ 518 (611)
++ ++++++||++++.. +.+++.||++.
T Consensus 291 ~~-----------------------------~~~dalR~~~l~~~~~~~~i~Fd~~~ 318 (353)
T cd00674 291 EV-----------------------------APPEVLRYLYARRKNPEKHIGFDLDI 318 (353)
T ss_pred HH-----------------------------hChHHHHHHHHhCCCCCCCCCcChhH
Confidence 98 58999999999988 78899999864
No 34
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.88 E-value=7.3e-22 Score=196.39 Aligned_cols=192 Identities=19% Similarity=0.222 Sum_probs=142.4
Q ss_pred CCceEEEEecCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCccccchHHH
Q 007251 182 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 261 (611)
Q Consensus 182 ~~~kV~Ve~~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~ 261 (611)
.++++-+.-|+|.|++++||||+|+.++.|+++|.++..||+|.....++|.|..+-.-+
T Consensus 17 ~~~~~~~y~~gpt~y~~~HiGH~r~~v~~Dvl~R~lr~~G~~V~~~~g~dd~g~ki~~~A-------------------- 76 (213)
T cd00672 17 NPGLVTMYVCGPTVYDYAHIGHARTYVVFDVLRRYLEDLGYKVRYVQNITDIDDKIIKRA-------------------- 76 (213)
T ss_pred CCCCceEEEeCCccCCCcccccchhHHHHHHHHHHHHhcCCeeEEEeecCCCCCHHHHHH--------------------
Confidence 357789999999999999999999999999999999999999999999999886543221
Q ss_pred HHHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHhcCCee-eecccccccCcHHHHHH
Q 007251 262 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDL-EEKGESFYNPYIPGVID 340 (611)
Q Consensus 262 l~~~y~~~~~~~~~d~~~~~~a~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~LgV~f-~~~~Es~y~~~v~~vi~ 340 (611)
.+. | .-|+++++.+.+.|++++++|||.+ +.+.-.
T Consensus 77 --------~~~--------------------g-----~~p~e~~~~~~~~f~~~~~~l~i~~~d~~~rt----------- 112 (213)
T cd00672 77 --------REE--------------------G-----LSWKEVADYYTKEFFEDMKALNVLPPDVVPRV----------- 112 (213)
T ss_pred --------HHc--------------------C-----CCHHHHHHHHHHHHHHHHHHcCCCCCCcceee-----------
Confidence 110 0 1135677888889999999999998 544332
Q ss_pred HHHhCCCceeecccEEEeccCCCCCeEEEccCCcccccCcchhHHHhhhhccCCCeEEEEEeCCccccHH---HHHHHHH
Q 007251 341 ELSKQGLVEESQGARVIFIEGVNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFD---MVFSAAK 417 (611)
Q Consensus 341 ~L~~~G~~~e~dGa~~~~~~g~~~d~Vl~ksDG~~tY~t~DiA~~~~r~~~~~~d~iIyV~g~dq~~hf~---~l~~~~~ 417 (611)
+... +++...++-... ++|.+.+.+..|+ .......
T Consensus 113 ------------------------------------Wh~e-c~am~~~~lg~~----~dih~~G~Dl~fpH~~~~~a~~~ 151 (213)
T cd00672 113 ------------------------------------WHIE-CSAMAMKYLGET----FDIHGGGVDLIFPHHENEIAQSE 151 (213)
T ss_pred ------------------------------------hhHH-HHHHHHHHcCCC----ccEEeecCCCCcChHHHHHHHHH
Confidence 3433 333333332222 3445444444444 3333334
Q ss_pred Hc-CCCCCCCCCCCcEEEEeeeeEEcCCCceeeeccCCcccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhcCc
Q 007251 418 RA-GWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGY 496 (611)
Q Consensus 418 ~l-G~~~~~~~~~~~~~Hv~~g~V~~~dG~kmSkR~G~~v~l~dLldea~~~a~~~~~~r~~~~~~~~~e~~~~a~~vg~ 496 (611)
++ |. +++..|.|. |+|. .+|+|||||+||+|+++|++++ +|.
T Consensus 152 a~~g~-----~~~~~~~h~--~~v~-~~g~KMSKs~Gn~v~~~dll~~-----------------------------~~~ 194 (213)
T cd00672 152 AATGK-----PFARYWLHT--GHLT-IDGEKMSKSLGNFITVRDALKK-----------------------------YDP 194 (213)
T ss_pred HHhCC-----CCCcEEEEE--EEEe-ccCcchhhcCCCccCHHHHHHH-----------------------------cCH
Confidence 33 43 467788998 6675 6888999999999999999998 699
Q ss_pred chhhhhhccCCCCCccccc
Q 007251 497 GAAKYFDLKNNRLTNYTFS 515 (611)
Q Consensus 497 ~avRy~~L~~~~~~~~~Fd 515 (611)
|++||++|+.++.++++||
T Consensus 195 da~R~~~l~~~~~~~l~f~ 213 (213)
T cd00672 195 EVLRLALLSSHYRSPLDFS 213 (213)
T ss_pred HHHHHHHHhCCcCCCCCCC
Confidence 9999999999999999986
No 35
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=99.88 E-value=1.1e-21 Score=208.57 Aligned_cols=256 Identities=18% Similarity=0.195 Sum_probs=168.5
Q ss_pred eEEEEecCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCccccchHHHHHH
Q 007251 185 KAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQE 264 (611)
Q Consensus 185 kV~Ve~~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~ 264 (611)
+..|--.-|||+|++||||+|+.++.|+++|.++..||+|.....++|+|..+..-+.. +.+-.. ...+.+
T Consensus 2 ~f~i~~~pP~vnG~lHiGHa~~~~~~Dvl~Ry~r~~G~~V~~~~g~D~hG~~ie~ka~k---~lg~~~---~~~~~~--- 72 (338)
T cd00818 2 EFVFHDGPPYANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGLPIELKVEK---ELGISG---KKDIEK--- 72 (338)
T ss_pred CeEEecCCCCCCCCchHHHHHHHHHHHHHHHHHHhcCCccCCcCCcCCCCchhHHHHHH---HhCCCC---Ccchhh---
Confidence 46677788999999999999999999999999999999999999999999877643321 011000 000000
Q ss_pred HHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHhcCCeeeec-----ccccccCcHHHHH
Q 007251 265 FYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEK-----GESFYNPYIPGVI 339 (611)
Q Consensus 265 ~y~~~~~~~~~d~~~~~~a~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~LgV~f~~~-----~Es~y~~~v~~vi 339 (611)
-+..+..+.++++++.+.+.|.+.+++|||.++|. .+..|.+.+.+++
T Consensus 73 ---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~lgi~~~~~~~~~T~~~~~~~~v~~~f 125 (338)
T cd00818 73 ---------------------------MGIAEFNAKCREFALRYVDEQEEQFQRLGVWVDWENPYKTMDPEYMESVWWVF 125 (338)
T ss_pred ---------------------------cCHHHHHHHHHHHHHHHHHHHHHHHHHhCceecCCCCeECCCHHHHHHHHHHH
Confidence 01112344567888999999999999999976532 2456778899999
Q ss_pred HHHHhCCCceeecccEEEec------------c------------------------------------------CCCCC
Q 007251 340 DELSKQGLVEESQGARVIFI------------E------------------------------------------GVNIP 365 (611)
Q Consensus 340 ~~L~~~G~~~e~dGa~~~~~------------~------------------------------------------g~~~d 365 (611)
.+|.++|++|+.++-+++.+ + |-..|
T Consensus 126 ~~L~~~G~iY~~~~~v~~~v~~~~~~qwf~~l~~~~~~l~~~~~~~~~~P~~~~~~~~~~l~~l~dw~iSR~~~WGip~P 205 (338)
T cd00818 126 KQLHEKGLLYRGYKVVPWPLIYRATPQWFIRVTKIKDRLLEANDKVNWIPEWVKNRFGNWLENRRDWCISRQRYWGTPIP 205 (338)
T ss_pred HHHHHCCCEeccCCeeeeEEEEEecCeEEEEcHHHHHHHHHHHhcCcEECHHHHHHHHHHHhcchhcceeeecccCceee
Confidence 99999999998776544321 1 00011
Q ss_pred eEEEccC--------CcccccCcc--hhHHH---h-----hhhc-cCCCeEEEEEeCCccc-cHHHHH-HHHHHcCCCCC
Q 007251 366 LIIVKSD--------GGFNYASTD--LAALW---Y-----RLNE-EKAEWIIYVTDVGQQL-HFDMVF-SAAKRAGWLSA 424 (611)
Q Consensus 366 ~Vl~ksD--------G~~tY~t~D--iA~~~---~-----r~~~-~~~d~iIyV~g~dq~~-hf~~l~-~~~~~lG~~~~ 424 (611)
.-...++ ....|.--| +.+.. + .++. +..| +.+.|.|+.. ||..+. .++...|..
T Consensus 206 ~~~~~~~~~~~~~~~~~v~~vWfda~~~~~~~~~~~~~~~~~~~~~p~d--~~~~GkDii~~wf~~~~~~~~~~~~~~-- 281 (338)
T cd00818 206 VWYCEDCGEVLVRRVPDVLDVWFDSGSMPYAQLHYPFENEDFEELFPAD--FILEGSDQTRGWFYSLLLLSTALFGKA-- 281 (338)
T ss_pred EEEecCCCeEEEecCCceEEEEEeCCCCHHHHcCCCCcchhhhccCCCe--EEeecchHHhHHHHHHHHHHHHhcCCC--
Confidence 1111122 123332111 11211 1 0111 2333 5678999864 565543 333344443
Q ss_pred CCCCCCcEEEEeeeeEEcCCCceeeeccCCcccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhcCcchhhhhhc
Q 007251 425 DDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDL 504 (611)
Q Consensus 425 ~~~~~~~~~Hv~~g~V~~~dG~kmSkR~G~~v~l~dLldea~~~a~~~~~~r~~~~~~~~~e~~~~a~~vg~~avRy~~L 504 (611)
++...+ .+|+++..+|+|||||+||+|+++|++++ +|+|++||+++
T Consensus 282 --p~~~~~---~hg~~~~~~g~KmSKS~gn~i~~~~~~~~-----------------------------~~~D~~R~~l~ 327 (338)
T cd00818 282 --PYKNVI---VHGFVLDEDGRKMSKSLGNYVDPQEVVDK-----------------------------YGADALRLWVA 327 (338)
T ss_pred --ccceEE---EEeeEECCCCCCCCCCCCCcCCHHHHHHH-----------------------------cCcHHHHHHHH
Confidence 222233 34788878899999999999999999998 69999999999
Q ss_pred cCC-CCCcccc
Q 007251 505 KNN-RLTNYTF 514 (611)
Q Consensus 505 ~~~-~~~~~~F 514 (611)
+.. ..+|+.|
T Consensus 328 ~~~~~~~d~~~ 338 (338)
T cd00818 328 SSDVYAEDLRF 338 (338)
T ss_pred hCCCccCCCCC
Confidence 887 4677655
No 36
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=99.87 E-value=2.6e-20 Score=218.66 Aligned_cols=128 Identities=18% Similarity=0.254 Sum_probs=96.2
Q ss_pred CceEEEEecCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCccccchHHHH
Q 007251 183 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 262 (611)
Q Consensus 183 ~~kV~Ve~~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l 262 (611)
.++.+|...-|||||+|||||+++.+++|+++|.++..||+|....-.+.+|..+...+... .+-
T Consensus 37 ~~~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~R~~r~~G~~v~~~~G~D~~Glpie~~~ek~---~g~------------ 101 (800)
T PRK13208 37 KPVYSIDTPPPTVSGSLHIGHVFSYTHTDFIARYQRMRGYNVFFPQGWDDNGLPTERKVEKY---YGI------------ 101 (800)
T ss_pred CCcEEEecCcCCCCCCccHHHHHhHHHHHHHHHHHHcCCCcccCCCCcCCCcchHHHHHHHH---hCC------------
Confidence 46789989999999999999999999999999999999999999998888887665432110 010
Q ss_pred HHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHhcCCeeeecc-----cccccCcHHH
Q 007251 263 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKG-----ESFYNPYIPG 337 (611)
Q Consensus 263 ~~~y~~~~~~~~~d~~~~~~a~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~LgV~f~~~~-----Es~y~~~v~~ 337 (611)
++. +-|.++.++..+++++.+.+.+++.+++||+.+||.. +..|...+..
T Consensus 102 -------------~~~------------~~~~~~f~~~~~~~~~~~~~~~~~~~~~lg~s~Dw~~~~~T~d~~~~~~v~~ 156 (800)
T PRK13208 102 -------------RKD------------DISREEFIELCRELTDEDEKKFRELWRRLGLSVDWSLEYQTISPEYRRISQK 156 (800)
T ss_pred -------------Ccc------------cCCHHHHHHHHHHHHHHHHHHHHHHHHHhCeeeccCCCcccCCHHHHHHHHH
Confidence 000 0011122333455677888889999999999998743 3345667999
Q ss_pred HHHHHHhCCCcee
Q 007251 338 VIDELSKQGLVEE 350 (611)
Q Consensus 338 vi~~L~~~G~~~e 350 (611)
++.+|.++|++|+
T Consensus 157 ~f~~L~~~Gliy~ 169 (800)
T PRK13208 157 SFLDLYKKGLIYR 169 (800)
T ss_pred HHHHHHHCCCeee
Confidence 9999999999986
No 37
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=99.87 E-value=3e-21 Score=208.55 Aligned_cols=132 Identities=19% Similarity=0.220 Sum_probs=98.6
Q ss_pred eEEEEecCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCccccchHHHHHH
Q 007251 185 KAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQE 264 (611)
Q Consensus 185 kV~Ve~~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~ 264 (611)
+.+|...-|+|+|++||||+|+.++.|+++|.++..|++|......+|.|..+...+.... +. .+..+
T Consensus 2 ~f~i~~~pPy~nG~lHiGH~~~~~~~Dv~~Ry~r~~G~~V~~~~G~D~hG~pie~~a~k~~---~~----~~~~~----- 69 (382)
T cd00817 2 VFVIDTPPPNVTGSLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEKKL---GI----EGKTR----- 69 (382)
T ss_pred cEEEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhcCCcccccCccCCCCChHHHHHHHHh---cc----cccch-----
Confidence 5678899999999999999999999999999999999999999999999987654432110 00 00000
Q ss_pred HHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHhcCCeeeec-----ccccccCcHHHHH
Q 007251 265 FYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEK-----GESFYNPYIPGVI 339 (611)
Q Consensus 265 ~y~~~~~~~~~d~~~~~~a~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~LgV~f~~~-----~Es~y~~~v~~vi 339 (611)
.+.+ ..+..+.++++++.+.+.+++.+++|||.+||. .+..|...+++++
T Consensus 70 --------~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~lgi~~Dw~~~~~T~~~~~~~~v~~~f 124 (382)
T cd00817 70 --------HDLG-----------------REEFLEKCWEWKEESGGKIREQLKRLGASVDWSREYFTMDPGLSRAVQEAF 124 (382)
T ss_pred --------hcCC-----------------HHHHHHHHHHHHHHHHHHHHHHHHHhCceeecCCCcCCCCHHHHHHHHHHH
Confidence 0001 112234456778888999999999999999852 1334567799999
Q ss_pred HHHHhCCCceeecc
Q 007251 340 DELSKQGLVEESQG 353 (611)
Q Consensus 340 ~~L~~~G~~~e~dG 353 (611)
.+|.++|++|+.+.
T Consensus 125 ~~L~~~G~iy~~~~ 138 (382)
T cd00817 125 VRLYEKGLIYRDNR 138 (382)
T ss_pred HHHHHCCCEEeeee
Confidence 99999999997543
No 38
>cd07956 Anticodon_Ia_Arg Anticodon-binding domain of arginyl tRNA synthetases. This domain is found in arginyl tRNA synthetases (ArgRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ArgRS catalyzes the transfer of arginine to the 3'-end of its tRNA.
Probab=99.87 E-value=2.1e-22 Score=191.16 Aligned_cols=119 Identities=45% Similarity=0.802 Sum_probs=105.0
Q ss_pred hcCcchhhhhhccCCCCCcccccccccccccCChHHHHHHHHHHHHHHHHHhCCChhhhhhcCCCCCCCHHHHHHHHHHH
Q 007251 493 AVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLL 572 (611)
Q Consensus 493 ~vg~~avRy~~L~~~~~~~~~Fd~d~~~~~~gnt~~ylqYa~aRi~SIlrKa~~~~~~~~~~~~~~l~~~~e~~L~~~l~ 572 (611)
++|+||+||++|++++.++++|||+++++++||+++|+||+|+|++||++|++.........+...+.++.|+.|+..+.
T Consensus 2 ~i~~~a~~~~~l~~~~~~~~~fd~~~~~~~~~~~~~yi~ya~aRi~nIl~k~~~~~~~~~~~~~~ll~~~~E~~L~~~l~ 81 (156)
T cd07956 2 EVGVGAVKYQDLSNKRIKDYTFDWERMLSFEGDTGPYLQYAHARLCSILRKAGETIEAEADADLSLLPEPDERDLILLLA 81 (156)
T ss_pred ccchhHHHHHHHhcCCCCCceecHHHHHhhcCCCchhHHHHHHHHHHHHHhCCCcCccccccchhhcCCHHHHHHHHHHH
Confidence 37999999999999999999999999999999999999999999999999986311100012223466889999999999
Q ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHhchhhcccCC
Q 007251 573 HFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNCQVQ 611 (611)
Q Consensus 573 ~fp~~v~~a~~~~~P~~l~~yL~~La~~fn~fY~~~~Vl 611 (611)
.||+++.+++++.+||.+++||++|+..||+||++|+|+
T Consensus 82 ~~~~~i~~~~~~~~~~~l~~~l~~L~~~~~~ffd~v~V~ 120 (156)
T cd07956 82 KFPEVVKNAAETLEPHTIATYLFDLAHAFSKFYNACPVL 120 (156)
T ss_pred HhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCccc
Confidence 999999999999999999999999999999999999985
No 39
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=99.87 E-value=3.3e-20 Score=219.37 Aligned_cols=137 Identities=20% Similarity=0.231 Sum_probs=103.7
Q ss_pred EEeeeeEEcCCCceeeeccCCcccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhcCcchhhhhhccC-CCCCcc
Q 007251 434 HVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKN-NRLTNY 512 (611)
Q Consensus 434 Hv~~g~V~~~dG~kmSkR~G~~v~l~dLldea~~~a~~~~~~r~~~~~~~~~e~~~~a~~vg~~avRy~~L~~-~~~~~~ 512 (611)
++.+|+|++.+|+|||||+||+|++.|++++ +|.||+||++++. .+.+|+
T Consensus 507 v~~hG~v~d~~G~KMSKSlGNvIdP~dvi~~-----------------------------yGaDalR~~ll~~~~~~~Di 557 (874)
T PRK05729 507 VYIHGLVRDEQGRKMSKSKGNVIDPLDLIDK-----------------------------YGADALRFTLAALASPGRDI 557 (874)
T ss_pred eEEeeeEECCCCCCcccCCCCCCCHHHHHHH-----------------------------hChHHHHHHHHhCCCCCCCc
Confidence 3455999989999999999999999999998 6999999999988 568899
Q ss_pred cccccccccccCChHHHHHHHHHHHHHHH-HHhCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Q 007251 513 TFSFDQMLNDKGNTAVYLLYAHARICSII-RKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVC 591 (611)
Q Consensus 513 ~Fd~d~~~~~~gnt~~ylqYa~aRi~SIl-rKa~~~~~~~~~~~~~~l~~~~e~~L~~~l~~fp~~v~~a~~~~~P~~l~ 591 (611)
+||++.+.... |..+-+ +..+|.+++. .+... ...+ ....+ ++.+++++..+..+.+.+.+++++++++.++
T Consensus 558 ~fs~~~l~~~~-~~~nkl-~N~~Rf~~~~~~~~~~--~~~~--~~~~~-~~~D~wil~~l~~~~~~v~~~~e~y~f~~a~ 630 (874)
T PRK05729 558 RFDEERVEGYR-NFANKL-WNASRFVLMNLEGADV--GELP--DPEEL-SLADRWILSRLNRTVAEVTEALDKYRFDEAA 630 (874)
T ss_pred eeCHHHHHHHH-HHHHHH-HHHHHHHHHhcccCCc--cccc--ccccC-CHHHHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence 99999975543 223333 2356766542 11110 0110 00112 4567889999999999999999999999999
Q ss_pred HHHHHHH-HHHhchhh
Q 007251 592 EYLYNLS-EYFTRFYS 606 (611)
Q Consensus 592 ~yL~~La-~~fn~fY~ 606 (611)
+.+++++ ..|.+||=
T Consensus 631 ~~l~~f~~~~~~~~Yl 646 (874)
T PRK05729 631 RALYEFIWNEFCDWYL 646 (874)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999998 57877773
No 40
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.87 E-value=8.5e-22 Score=184.14 Aligned_cols=143 Identities=22% Similarity=0.213 Sum_probs=118.5
Q ss_pred EEecCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCccccchHHHHHHHHH
Q 007251 188 VDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYR 267 (611)
Q Consensus 188 Ve~~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~ 267 (611)
|++|+|||+|++||||+|+++++|+++|.|+..||+|...++++|||.|++..+...
T Consensus 1 ~~~~~p~~~~~~HlGh~~~~~~~d~~~r~lr~~G~~v~~~~~~dd~~~~~~~~a~~~----------------------- 57 (143)
T cd00802 1 TTFSGITPNGYLHIGHLRTIVTFDFLAQAYRKLGYKVRCIALIDDAGGLIGDPANKK----------------------- 57 (143)
T ss_pred CEecCCCCCCCccHhHHHHHHHHHHHHHHHHHcCCCeEEEeeeCCCchHHHHHHHhc-----------------------
Confidence 579999999999999999999999999999999999999999999999987653100
Q ss_pred HHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHhcCCeeeecccccccCcHHHHHHHHHhCCC
Q 007251 268 RSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGESFYNPYIPGVIDELSKQGL 347 (611)
Q Consensus 268 ~~~~~~~~d~~~~~~a~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~LgV~f~~~~Es~y~~~v~~vi~~L~~~G~ 347 (611)
...|+++++.+.+.|++.|+
T Consensus 58 ------------------------------~~~~~~~~~~~~~~~~~~~~------------------------------ 77 (143)
T cd00802 58 ------------------------------GENAKAFVERWIERIKEDVE------------------------------ 77 (143)
T ss_pred ------------------------------CCCHHHHHHHHHHHHHHHHH------------------------------
Confidence 02345677777777887777
Q ss_pred ceeecccEEEeccCCCCCeEEEccCCcccccCcchhHHHhhhhccCCCeEEEEEeCCccccHHHHHHHHHHcCCCCCCCC
Q 007251 348 VEESQGARVIFIEGVNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDS 427 (611)
Q Consensus 348 ~~e~dGa~~~~~~g~~~d~Vl~ksDG~~tY~t~DiA~~~~r~~~~~~d~iIyV~g~dq~~hf~~l~~~~~~lG~~~~~~~ 427 (611)
|.+.++|...++...+ +.|++.|.||..|+++.+.+++++|..
T Consensus 78 -----------------------------y~~~~~a~~~~~~~~~---~~i~~~G~Dq~~h~~~~~~i~~~~~~~----- 120 (143)
T cd00802 78 -----------------------------YMFLQAADFLLLYETE---CDIHLGGSDQLGHIELGLELLKKAGGP----- 120 (143)
T ss_pred -----------------------------HHHHHHHHHHHHhhCC---cEEEEechhHHHHHHHHHHHHHHhCCC-----
Confidence 9999988777765333 679999999999999999999999863
Q ss_pred CCCcEEEEeeeeEEcCCCceeeecc
Q 007251 428 TYPKASHVGFGLVLGEDGKRLRTRF 452 (611)
Q Consensus 428 ~~~~~~Hv~~g~V~~~dG~kmSkR~ 452 (611)
. ...|+.||+|++.+|+|||||+
T Consensus 121 ~--~p~~~~~~~l~~~~g~KmSks~ 143 (143)
T cd00802 121 A--RPFGLTFGRVMGADGTKMSKSK 143 (143)
T ss_pred C--CceEEEeCCeECCCCCcCCCCC
Confidence 1 2356667999988889999985
No 41
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=99.86 E-value=2.9e-21 Score=212.82 Aligned_cols=138 Identities=17% Similarity=0.252 Sum_probs=111.7
Q ss_pred CCeEEEccCCcccccCcchhHHHhhhhccCCCeEEEEEeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEeeeeEEcC
Q 007251 364 IPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGE 443 (611)
Q Consensus 364 ~d~Vl~ksDG~~tY~t~DiA~~~~r~~~~~~d~iIyV~g~dq~~hf~~l~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~ 443 (611)
.|.||+|+||+|||. +|++.++. ..+++++| +|.||..|+++++.+++++|+. .+.+.|+++ +.+.
T Consensus 172 ~D~Vl~RsdG~ptY~---~A~~vdD~-~~~ithvI--rG~d~~~~t~~~~~l~~aLg~~------~p~~~H~p~--l~~~ 237 (470)
T TIGR00464 172 DDFVILRSDGSPTYN---FAVVVDDY-LMKITHVI--RGEDHISNTPKQILIYQALGWK------IPVFAHLPM--ILDE 237 (470)
T ss_pred CCeEEEecCCCcccc---cHHHHHHH-hCCCCEEE--ECchhhcCHHHHHHHHHHcCCC------CCeEEEEee--eecC
Confidence 589999999999999 89999998 57999998 9999999999999999999984 468999988 4568
Q ss_pred CCceeeeccCCcccHHHHHHHH-HHHHHHHHHHhcCCCCCCHH---HHHHHHhhcCcchhhhhhccCCCCCccccccccc
Q 007251 444 DGKRLRTRFSEVVRLVDLLDEA-KNRSKAVLIERGKDKEWTEE---ELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQM 519 (611)
Q Consensus 444 dG~kmSkR~G~~v~l~dLldea-~~~a~~~~~~r~~~~~~~~~---e~~~~a~~vg~~avRy~~L~~~~~~~~~Fd~d~~ 519 (611)
+|+|||||+| .+++++|++++ ...|......+ .+|++. +... ..++++||+|+..+.+++.|||+++
T Consensus 238 ~g~kLSKR~g-~~~l~~l~~~g~~p~a~~~~~~~---lG~~~~~~~e~~~-----~~~~i~~f~l~~~~~~~~~fd~~kL 308 (470)
T TIGR00464 238 DGKKLSKRDG-ATSIMQFKEQGYLPEALINYLAL---LGWSPPDDQEFFS-----LEELIEIFSLNRVSKSPAKFDWKKL 308 (470)
T ss_pred CCccccccCC-CccHHHHHHCCCCHHHHHHHHHH---cCCCCCCccccCC-----HHHHHHhcCcccCCCCCCeecHHHH
Confidence 8999999999 88999999997 44565554443 122211 1111 1278999999999999999999997
Q ss_pred ccccC
Q 007251 520 LNDKG 524 (611)
Q Consensus 520 ~~~~g 524 (611)
..+|+
T Consensus 309 ~~~N~ 313 (470)
T TIGR00464 309 QWLNA 313 (470)
T ss_pred HHHHH
Confidence 77764
No 42
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=99.85 E-value=2.4e-19 Score=211.99 Aligned_cols=135 Identities=18% Similarity=0.221 Sum_probs=99.0
Q ss_pred EeeeeEEcCCCceeeeccCCcccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhcCcchhhhhhccCCC-CCccc
Q 007251 435 VGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNR-LTNYT 513 (611)
Q Consensus 435 v~~g~V~~~dG~kmSkR~G~~v~l~dLldea~~~a~~~~~~r~~~~~~~~~e~~~~a~~vg~~avRy~~L~~~~-~~~~~ 513 (611)
+.+|+|++.+|+|||||+||+|++.|++++ +|.|++||++++..+ .+|++
T Consensus 513 ~~hG~v~d~~G~KMSKS~GN~i~p~~~i~~-----------------------------ygaDalR~~l~~~~~~~~d~~ 563 (861)
T TIGR00422 513 YIHGLVRDEQGRKMSKSLGNVIDPLDVIEK-----------------------------YGADALRFTLASLVTPGDDIN 563 (861)
T ss_pred EEeeEEECCCCCCCCcCCCCCCCHHHHHHH-----------------------------hChHHHHHHHHhCCCCCCCce
Confidence 345999988999999999999999999998 699999999998876 89999
Q ss_pred ccccccccccCChHHHHHHHHHHHHHHHHHhCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Q 007251 514 FSFDQMLNDKGNTAVYLLYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEY 593 (611)
Q Consensus 514 Fd~d~~~~~~gnt~~ylqYa~aRi~SIlrKa~~~~~~~~~~~~~~l~~~~e~~L~~~l~~fp~~v~~a~~~~~P~~l~~y 593 (611)
|+++.+.... |...-+-+ ..|...+.-+.. + .++. .... ..+.+++|+..+....+.+.+++++++.+.+++.
T Consensus 564 f~~~~~~~~~-~~~nkl~N-~~rf~~~~~~~~-~--~~~~-~~~~-~~~~D~wil~~l~~~~~~v~~~~e~~~f~~A~~~ 636 (861)
T TIGR00422 564 FDWKRVESAR-NFLNKLWN-ASRFVLMNLSDD-L--ELSG-GEEK-LSLADRWILSKLNRTIKEVRKALDKYRFAEAAKA 636 (861)
T ss_pred ecHHHHHHHH-HHHHHHHH-HHHHHHhccccc-c--cccc-cccc-CCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 9999875432 22222222 345443321110 0 0100 0011 2456788999999999999999999999999999
Q ss_pred HHHHH-HHHhchh
Q 007251 594 LYNLS-EYFTRFY 605 (611)
Q Consensus 594 L~~La-~~fn~fY 605 (611)
++++. ..|.++|
T Consensus 637 l~~f~~~~~~n~Y 649 (861)
T TIGR00422 637 LYEFIWNDFCDWY 649 (861)
T ss_pred HHHHHHHHHHHHH
Confidence 99996 5666665
No 43
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=99.83 E-value=2.1e-20 Score=206.08 Aligned_cols=137 Identities=18% Similarity=0.260 Sum_probs=109.9
Q ss_pred CCeEEEccCCcccccCcch-hHHHhhhhccCCCeEEEEEeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEeeeeEEc
Q 007251 364 IPLIIVKSDGGFNYASTDL-AALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLG 442 (611)
Q Consensus 364 ~d~Vl~ksDG~~tY~t~Di-A~~~~r~~~~~~d~iIyV~g~dq~~hf~~l~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~ 442 (611)
.|.||+||||+|||.++|+ ++|.+++ +++| +|.||..|.+++..+++++|+. .+.+.|+++ +.+
T Consensus 182 ~D~Vl~RsDG~ptY~~a~vVdD~~~~i-----thvI--rG~d~~~~t~~q~~l~~alG~~------~p~~~H~pl--i~~ 246 (476)
T PRK01406 182 DDFVILRSDGTPTYNFAVVVDDHLMGI-----THVI--RGEDHLSNTPKQILLYEALGWE------VPVFAHLPL--ILG 246 (476)
T ss_pred CCcEEEecCCCccccchHHHHHHHcCC-----CEEE--ECchhhcCHHHHHHHHHHhCCC------CCeEEEeee--eeC
Confidence 5899999999999999998 7787665 7887 9999999999999999999984 367999987 556
Q ss_pred CCCceeeeccCCcccHHHHHHHH-HHHHHHHHHHhcCCCCCCH--HHHHHHHhhcCcchhhhhhccCCCCCccccccccc
Q 007251 443 EDGKRLRTRFSEVVRLVDLLDEA-KNRSKAVLIERGKDKEWTE--EELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQM 519 (611)
Q Consensus 443 ~dG~kmSkR~G~~v~l~dLldea-~~~a~~~~~~r~~~~~~~~--~e~~~~a~~vg~~avRy~~L~~~~~~~~~Fd~d~~ 519 (611)
.+|+|||||+| .++++++++++ ...|......+ .+|++ +|... -.+++++|+|+..+.+++.|||+++
T Consensus 247 ~~g~klSKR~g-~~~l~~l~~~G~~p~Ai~n~l~~---lG~s~~~~e~~~-----~~~~i~~f~l~~~~~s~~~fd~~kL 317 (476)
T PRK01406 247 PDGKKLSKRHG-ATSVEQYRDMGYLPEALLNYLAL---LGWSHGDQEIFS-----LEELIELFDLERVSKSPARFDIKKL 317 (476)
T ss_pred CCCCcccCcCC-ccCHHHHHHCCCCHHHHHHHHHH---hCCCCCccccCC-----HHHHHHhcChhhCCCCCccccHHHH
Confidence 89999999999 88999999987 44555554433 12221 11111 1278999999999999999999999
Q ss_pred ccccC
Q 007251 520 LNDKG 524 (611)
Q Consensus 520 ~~~~g 524 (611)
..+|+
T Consensus 318 ~~~N~ 322 (476)
T PRK01406 318 DWLNG 322 (476)
T ss_pred HHHHH
Confidence 88874
No 44
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=3.5e-18 Score=195.21 Aligned_cols=139 Identities=19% Similarity=0.232 Sum_probs=104.5
Q ss_pred CCCCcEEEEeeeeEEcCCCceeeeccCCcccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhcCcchhhhhhccC
Q 007251 427 STYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKN 506 (611)
Q Consensus 427 ~~~~~~~Hv~~g~V~~~dG~kmSkR~G~~v~l~dLldea~~~a~~~~~~r~~~~~~~~~e~~~~a~~vg~~avRy~~L~~ 506 (611)
||...+.| |+|.+++|+|||||+||+|.+.|++++ +|.||+||++...
T Consensus 508 PFk~V~ih---GLVrDe~G~KMSKS~GNvIDP~d~I~~-----------------------------yGaDAlRf~la~~ 555 (877)
T COG0525 508 PFKDVYIH---GLVRDEQGRKMSKSKGNVIDPLDVIDK-----------------------------YGADALRFTLASL 555 (877)
T ss_pred CccEEEEe---eeEEcCCCCCCcccCCCcCCHHHHHHH-----------------------------hChHHHHHHHHhc
Confidence 34444444 999999999999999999999999998 7999999999988
Q ss_pred -CCCCcccccccccccccCChHHHHHHHHHHHHHHHH-HhCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 007251 507 -NRLTNYTFSFDQMLNDKGNTAVYLLYAHARICSIIR-KSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTN 584 (611)
Q Consensus 507 -~~~~~~~Fd~d~~~~~~gnt~~ylqYa~aRi~SIlr-Ka~~~~~~~~~~~~~~l~~~~e~~L~~~l~~fp~~v~~a~~~ 584 (611)
++..|+.||++++.... |-++-+ +..+|...+.. +.+ ..+. .. ...++.+++++..+.+..+.+.+++++
T Consensus 556 ~~~G~Di~~~~~~~~~~r-nF~nKl-WNa~Rfv~~~~~~~~--~~~~---~~-~~~~~~drWIls~l~~~v~~v~~~ld~ 627 (877)
T COG0525 556 ASPGRDINFDEKRVEGYR-NFLNKL-WNATRFVLMNLDDLG--PDDL---DL-LALSLADRWILSRLNETVKEVTEALDN 627 (877)
T ss_pred cCCCcccCcCHHHHHHHH-HHHHHH-HhHHHHHHhcccccC--cccc---cc-cccchHHHHHHHHHHHHHHHHHHHHHh
Confidence 67899999999986421 112212 44456554422 111 1010 00 111577899999999999999999999
Q ss_pred cchHHHHHHHHHHH-HHHhchh
Q 007251 585 LLPNVVCEYLYNLS-EYFTRFY 605 (611)
Q Consensus 585 ~~P~~l~~yL~~La-~~fn~fY 605 (611)
|+...+++.||++. ..|-.+|
T Consensus 628 y~f~~a~~~ly~F~W~~fcD~Y 649 (877)
T COG0525 628 YRFDEAARALYEFIWNDFCDWY 649 (877)
T ss_pred hhHHHHHHHHHHHhHHHHHHHH
Confidence 99999999999976 7777777
No 45
>KOG0436 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=1.2e-18 Score=181.09 Aligned_cols=315 Identities=18% Similarity=0.213 Sum_probs=207.6
Q ss_pred CCCCCCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCccccchHHHHHHHHHHHhccc
Q 007251 194 NIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRF 273 (611)
Q Consensus 194 Np~kplHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~~~~~ 273 (611)
.|+-+.|+||+.++++.|+|||.-+..|-.|....-.+..|-.|...++. +
T Consensus 49 YvNAaPHlGhlYS~llaDai~R~q~lkg~~v~fsTGTDEHGlKIqtaaat--------------------------n--- 99 (578)
T KOG0436|consen 49 YVNAAPHLGHLYSTLLADAIARFQRLKGKKVIFSTGTDEHGLKIQTAAAT--------------------------N--- 99 (578)
T ss_pred ecCCCcchhHHHHHHHHHHHHHHHhhcCCceEeecCCCccchhhhhhHhh--------------------------c---
Confidence 56778999999999999999999999999988877555555433322110 0
Q ss_pred CCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHhcCCeee-e--cccccccCcHHHHHHHHHhCCCcee
Q 007251 274 DSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLE-E--KGESFYNPYIPGVIDELSKQGLVEE 350 (611)
Q Consensus 274 ~~d~~~~~~a~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~LgV~f~-~--~~Es~y~~~v~~vi~~L~~~G~~~e 350 (611)
.- +| .++||..-..|.+..+..||.++ + ..+..|...|++..+.+.++|.+|.
T Consensus 100 G~------------------~P------~e~cDr~s~~f~qL~k~~gi~yt~FIRTTdpkH~a~Vqefw~~~~knG~iy~ 155 (578)
T KOG0436|consen 100 GR------------------NP------PELCDRISQSFRQLWKDAGIAYTKFIRTTDPKHEAIVQEFWARVFKNGDIYR 155 (578)
T ss_pred CC------------------Ch------HHHHhhhhHHHHHHHHHhCcchhheeecCCchHHHHHHHHHHHHHhCCceee
Confidence 00 11 35678777888999999999984 3 2466777789999999999999996
Q ss_pred e--cccEEEecc---------------C------CCCCeEEEccCCcccccCc------chhHHHh--------------
Q 007251 351 S--QGARVIFIE---------------G------VNIPLIIVKSDGGFNYAST------DLAALWY-------------- 387 (611)
Q Consensus 351 ~--dGa~~~~~~---------------g------~~~d~Vl~ksDG~~tY~t~------DiA~~~~-------------- 387 (611)
. +|++|+..+ | ...|++-.+.+ .|+.+ -+--|+-
T Consensus 156 g~~eGwYcvsdEtf~pEskv~k~p~~~gk~vsmEsg~~vv~~kE~---NY~FrLSkfqk~l~d~lrkNP~fvqPs~~~~q 232 (578)
T KOG0436|consen 156 GDYEGWYCVSDETFYPESKVLKNPCPPGKVVSMESGNPVVWRKED---NYFFRLSKFQKPLEDHLRKNPRFVQPSYFHNQ 232 (578)
T ss_pred ecccceEeccccccCCHHHHhcCCCCCCceeeeccCCceeEeccc---ceeeeHHhhhhHHHHHHhcCCCccCchHHHHH
Confidence 4 688888543 1 01233333323 45432 0000100
Q ss_pred -------------------hhhcc------CCCeEEEEE-----------------------------------eCCccc
Q 007251 388 -------------------RLNEE------KAEWIIYVT-----------------------------------DVGQQL 407 (611)
Q Consensus 388 -------------------r~~~~------~~d~iIyV~-----------------------------------g~dq~~ 407 (611)
|+ .| +....|||| |.|-..
T Consensus 233 Vl~~lktglpDlSISRpsarl-~WGIPvP~ddsQtIYVWfDAL~nYiSvig~~~~~~N~k~~ls~~wPat~HvIGKDIlr 311 (578)
T KOG0436|consen 233 VLSWLKTGLPDLSISRPSARL-DWGIPVPGDDSQTIYVWFDALLNYISVIGYPNKQQNLKTALSFGWPATLHVIGKDILR 311 (578)
T ss_pred HHHHHHcCCCcccccChhhhc-ccCCCCCCCCcceEEEeHHHHhhHHHhhcCCchhccccceeecCCCceeeehhhhhhh
Confidence 00 12 123456666 222111
Q ss_pred cHHHH-H-HHHHHcCCCCCCCCCCCcEEEEeeeeEEcCCCceeeeccCCcccHHHHHHHHHHHHHHHHHHhcCCCCCCHH
Q 007251 408 HFDMV-F-SAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEE 485 (611)
Q Consensus 408 hf~~l-~-~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~dG~kmSkR~G~~v~l~dLldea~~~a~~~~~~r~~~~~~~~~ 485 (611)
|..+ + +.+.++|.+. +..+ +.+|..+ .+|.|||||.||+|.+.++++.
T Consensus 312 -FHavYWPafLmaAGlpl-----P~~I--~vHghwt-~ngmKMsKSLGNvvdP~~l~~k--------------------- 361 (578)
T KOG0436|consen 312 -FHAVYWPAFLMAAGLPL-----PKMI--FVHGHWT-KNGMKMSKSLGNVVDPFELVQK--------------------- 361 (578)
T ss_pred -hhhhhhHHHHHhcCCCC-----ccEE--EEeeeee-ecceecchhhccccCHHHHHHH---------------------
Confidence 1111 0 2234455521 1111 1235444 6899999999999999999998
Q ss_pred HHHHHHhhcCcchhhhhhccCC-CCCcccccccccccc-cCChHHHHHHHHHHHHH--HHHHhCCChhhhhhcCCCCCCC
Q 007251 486 ELEQTAEAVGYGAAKYFDLKNN-RLTNYTFSFDQMLND-KGNTAVYLLYAHARICS--IIRKSGKDIEELKKTGSLVLDH 561 (611)
Q Consensus 486 e~~~~a~~vg~~avRy~~L~~~-~~~~~~Fd~d~~~~~-~gnt~~ylqYa~aRi~S--IlrKa~~~~~~~~~~~~~~l~~ 561 (611)
+|+|++|||+|++. ...|.+|+.+++... |...+.-+....+|+++ +.-+..+.. +.. + .....
T Consensus 362 --------ygvD~vRyflLr~~~l~~Dgdy~eekl~k~~n~~La~~lG~LlnRc~gkkln~sn~e~~--l~~-~-s~~v~ 429 (578)
T KOG0436|consen 362 --------YGVDAVRYFLLREGELGNDGDYSEEKLIKIVNAHLANTLGNLLNRCLGKKLNISNCEST--LVV-D-SPTVA 429 (578)
T ss_pred --------hCccceeeEeeeccccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHhhcccChhccccc--ccc-C-Ccchh
Confidence 79999999999996 478999999998775 45566667777789987 433221110 000 0 10111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhchhhc
Q 007251 562 ADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSN 607 (611)
Q Consensus 562 ~~e~~L~~~l~~fp~~v~~a~~~~~P~~l~~yL~~La~~fn~fY~~ 607 (611)
.+...|+..+...|++..+.++++....+++.+..+..+-|.|...
T Consensus 430 ae~~~lv~~v~kl~ev~a~~~d~f~~~~ale~V~si~n~~ntlvq~ 475 (578)
T KOG0436|consen 430 AEGEPLVDTVEKLPEVAATNYDNFSLYSALEAVLSIGNAGNTLVQQ 475 (578)
T ss_pred hccchHHHHHHHhHHHHHhhcccccHHHHHHHHHHHHHhhhhhhhh
Confidence 2223699999999999999999999999999999999999999864
No 46
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=99.81 E-value=6.8e-19 Score=196.05 Aligned_cols=256 Identities=15% Similarity=0.206 Sum_probs=166.6
Q ss_pred eEEEEecCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCC---CccccchHHH
Q 007251 185 KAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNS---EDANETAIGE 261 (611)
Q Consensus 185 kV~Ve~~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~G~Q~~~l~~~~~~~~~~~---~~~~~~~i~~ 261 (611)
.++|+ |+..|+|++||||+|..+.+|+++|.|+..|++|..++..+|+|. +.++ ....|+. +.+-|.++..
T Consensus 24 ~~~~~-~g~~psG~~HiG~~~e~~~~d~v~r~lr~~G~~v~~i~~~Dd~d~-lRkv----p~~~p~~~~~~~~~G~pl~~ 97 (510)
T PRK00750 24 PVVVE-TGIGPSGLPHIGNFREVARTDMVRRALRDLGIKTRLIFFSDDMDG-LRKV----PDNVPNQEMLEEYLGKPLTE 97 (510)
T ss_pred cEEEE-eCCCCCCCcccccccchhhHHHHHHHHHHcCCcEEEEEEEecCCc-cccc----CCCCCchHHHHHhcCccccc
Confidence 36664 555799999999999999999999999999999999999999985 1111 0000100 0001111110
Q ss_pred HHHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeccc-ccc-cCcH-HHH
Q 007251 262 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-SFY-NPYI-PGV 338 (611)
Q Consensus 262 l~~~y~~~~~~~~~d~~~~~~a~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~LgV~f~~~~E-s~y-~~~v-~~v 338 (611)
+ .+| .|. .+.+++.+...|++.+++|||++++++. ..| ++.. +.+
T Consensus 98 ~------------p~p--------------~G~------~~~~~~~~~~~~~~~~~~~gi~~d~~~~t~~y~~g~~~~~i 145 (510)
T PRK00750 98 I------------PDP--------------FGC------HESYAEHFNAPLREFLDRFGIEYEFISATECYKSGRYDEAI 145 (510)
T ss_pred C------------CCC--------------CCC------chHHHHHHHHHHHHHHHHcCCceEEEehhhhhccCchHHHH
Confidence 0 111 111 2457888899999999999999976543 344 4443 344
Q ss_pred HHHHHhCCCcee----------ecccEEEe--cc--CCCCCeEEEcc---CCcccccCc-------chh----HHHhhhh
Q 007251 339 IDELSKQGLVEE----------SQGARVIF--IE--GVNIPLIIVKS---DGGFNYAST-------DLA----ALWYRLN 390 (611)
Q Consensus 339 i~~L~~~G~~~e----------~dGa~~~~--~~--g~~~d~Vl~ks---DG~~tY~t~-------DiA----~~~~r~~ 390 (611)
...|++++.+.+ .++..-|. ++ |.....++..- +|+.+|.+. |+- -.-||+
T Consensus 146 ~~~l~~~~~i~~il~~~~~~~~~~~~~P~~pic~~cg~~~~~~~~~~d~~~~~v~y~~~cG~~~~~~~~~g~~KL~Wr~- 224 (510)
T PRK00750 146 LTALENRDEIMEILLPYLGEERQATYSPFLPICPKCGKVLTTPVISYDAEAGTVTYDCECGHEGEVPVTGGHGKLQWKV- 224 (510)
T ss_pred HHHHHhHHHHHHHHHHhcCCccCCCeeeeeeeCCCCCccceEEEEEEeCCCCEEEEEcCCCCEEEEecCCCCcccCCCC-
Confidence 455566665432 23333332 12 43322223222 244566432 221 223443
Q ss_pred ccCC-----CeEEEEEeCCccc-cHHHHHHHHH-HcCCCCCCCCCCCcEEEEeeeeEEcCCCceeeeccCCcccHHHHHH
Q 007251 391 EEKA-----EWIIYVTDVGQQL-HFDMVFSAAK-RAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLD 463 (611)
Q Consensus 391 ~~~~-----d~iIyV~g~dq~~-hf~~l~~~~~-~lG~~~~~~~~~~~~~Hv~~g~V~~~dG~kmSkR~G~~v~l~dLld 463 (611)
+|.+ +--+-+.|.||.. ++.....+++ .+|+.+ + .|+.||+|++.+|+|||||+||+|+++|+++
T Consensus 225 dW~~rW~~l~Vd~e~~GkDh~~~s~~~~~~i~~~ilg~~~------P--~~~~y~~v~~~~G~KMSKSkGN~i~~~d~l~ 296 (510)
T PRK00750 225 DWPMRWAALGVDFEPFGKDHASASYDTSKKIAREILGGEP------P--EPFVYELFLDKKGEKISKSKGNVITIEDWLE 296 (510)
T ss_pred CcHHHHHHcCCCEEeeCcccCcchHHHHHHHHHHHcCCCC------C--eeeeeeeEEeCCCCcccccCCCccCHHHHHH
Confidence 2221 1235679999999 9999999998 999853 2 3456799998779999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHhhcCcchhhhhhc-cCCCCCcccccc
Q 007251 464 EAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDL-KNNRLTNYTFSF 516 (611)
Q Consensus 464 ea~~~a~~~~~~r~~~~~~~~~e~~~~a~~vg~~avRy~~L-~~~~~~~~~Fd~ 516 (611)
. ++++++|||++ +.++.++++|++
T Consensus 297 ~-----------------------------~~pd~lR~~l~~~~~~~~~~~f~~ 321 (510)
T PRK00750 297 Y-----------------------------APPESLRLFMFARPKPAKRLDFDV 321 (510)
T ss_pred H-----------------------------CCHHHHHHHHHhCCCCCCCCcccH
Confidence 8 68999997766 556789999988
No 47
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=99.81 E-value=2.7e-18 Score=203.23 Aligned_cols=168 Identities=13% Similarity=0.145 Sum_probs=115.6
Q ss_pred EEEEeCCccc-cHHHHH-HHHHHcCCCCCCCCCCCcEEEEeeeeEEcCCCceeeeccCCcccHHHHHHHHHHHHHHHHHH
Q 007251 398 IYVTDVGQQL-HFDMVF-SAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIE 475 (611)
Q Consensus 398 IyV~g~dq~~-hf~~l~-~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~dG~kmSkR~G~~v~l~dLldea~~~a~~~~~~ 475 (611)
++|.|.||.. ||..+. ..+...|.. ++. .++.+|+|++.+|+|||||+||+|++.|++++
T Consensus 567 ~~i~G~Di~r~Wf~~~~~~~~~~~~~~----P~k---~v~~hG~vl~~~G~KMSKSkGNvI~p~d~i~~----------- 628 (861)
T TIGR00392 567 FILEGSDQTRGWFYSSLAIGTALFGQA----PYK---NVITHGFTLDEKGRKMSKSLGNVVDPLKVINK----------- 628 (861)
T ss_pred EEEEecchhccHHHHHHHHHHHHcCCC----ChH---hhEecceEECCCCCCcCCCCCCCCCHHHHHHH-----------
Confidence 4566666643 444332 222233442 222 23346899988999999999999999999998
Q ss_pred hcCCCCCCHHHHHHHHhhcCcchhhhhhccCCCCCcccccccccccccCChHHHHHHHHHHHH--HHHHHhCCChhhhhh
Q 007251 476 RGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHARIC--SIIRKSGKDIEELKK 553 (611)
Q Consensus 476 r~~~~~~~~~e~~~~a~~vg~~avRy~~L~~~~~~~~~Fd~d~~~~~~gnt~~ylqYa~aRi~--SIlrKa~~~~~~~~~ 553 (611)
+|+|++||++++..+.+|++|+++.+....++....+.++..++. +.+.+.......+
T Consensus 629 ------------------yGaDalR~~ll~~~~~~D~~fs~~~l~~~~~~~~n~l~N~~~~~~~~~~l~~~~~~~~~~-- 688 (861)
T TIGR00392 629 ------------------YGADILRLYVASSDPWEDLRFSDEILKQVVEKYRKIRWNTYRFLLTYANLDKFDPLFNSV-- 688 (861)
T ss_pred ------------------cCHHHHHHHHHhCCCCCCceECHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCcccccc--
Confidence 799999999999977899999999976544333332222222332 4454432100000
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-Hhchh
Q 007251 554 TGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEY-FTRFY 605 (611)
Q Consensus 554 ~~~~~l~~~~e~~L~~~l~~fp~~v~~a~~~~~P~~l~~yL~~La~~-fn~fY 605 (611)
....+ .+.++.|+..+..+.+.+.+++++++++.+++++++++.. |+++|
T Consensus 689 -~~~~l-~~~d~~ll~~l~~~~~~v~~~~e~~~~~~a~~~l~~f~~~~l~n~Y 739 (861)
T TIGR00392 689 -AVEKF-PEEDRWILSRLNSLVEEVNEALEKYNFHKVLRALQDFIVEELSNWY 739 (861)
T ss_pred -ccccC-CHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 00112 4567889999999999999999999999999999999876 87777
No 48
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=99.80 E-value=2.6e-17 Score=196.39 Aligned_cols=140 Identities=18% Similarity=0.220 Sum_probs=101.2
Q ss_pred EEeeeeEEcCCCceeeeccCCcccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhcCcchhhhhhccCCC-CCcc
Q 007251 434 HVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNR-LTNY 512 (611)
Q Consensus 434 Hv~~g~V~~~dG~kmSkR~G~~v~l~dLldea~~~a~~~~~~r~~~~~~~~~e~~~~a~~vg~~avRy~~L~~~~-~~~~ 512 (611)
++.+|+|++.+|+|||||+||+|++.|++++ +|+||+||++++..+ .+|+
T Consensus 579 v~~hG~Vld~~G~KMSKSlGNvIdP~dli~~-----------------------------yGaDalR~~lls~~~~~~D~ 629 (975)
T PRK06039 579 VLVHGHVLDEDGQKMSKSLGNYVDPFEVFDK-----------------------------YGADALRWYLLSSSAPWEDL 629 (975)
T ss_pred EEEeeeEECCCCCCcCCCCCCcCCHHHHHHH-----------------------------hChHHHHHHHHhCCCCCCCc
Confidence 3456899988999999999999999999998 699999999999875 8999
Q ss_pred cccccccccc-cCChHHHHHHHHHHHHHHHHHhCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Q 007251 513 TFSFDQMLND-KGNTAVYLLYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVC 591 (611)
Q Consensus 513 ~Fd~d~~~~~-~gnt~~ylqYa~aRi~SIlrKa~~~~~~~~~~~~~~l~~~~e~~L~~~l~~fp~~v~~a~~~~~P~~l~ 591 (611)
+||++.+++. ++.. .-+-+++.++....+-.+.+.... ......+ ++.+++|+..+..++..+.+++++++++.++
T Consensus 630 ~fs~~~~~~~~~~~l-~kl~N~~~f~~~y~~~~~~~~~~~-~~~~~~~-~~~D~wils~l~~li~~v~~a~e~y~~~~A~ 706 (975)
T PRK06039 630 RFSEDGVREVVRKFL-LTLWNVYSFFVLYANLDGFDYPPA-EDEVDSL-NELDRWILSRLNSLVKEVTEALDNYDITKAA 706 (975)
T ss_pred eechhHHHHHHHHHH-HHHHHHHHHHHHHhhhccCCcccc-ccccccC-CHHHHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence 9999995543 2211 112122222211111001000000 0001112 4678889999999999999999999999999
Q ss_pred HHHHHHHHHHhchh
Q 007251 592 EYLYNLSEYFTRFY 605 (611)
Q Consensus 592 ~yL~~La~~fn~fY 605 (611)
+.|++++..|++||
T Consensus 707 ~~l~~f~~~lsn~Y 720 (975)
T PRK06039 707 RAIRDFVDDLSNWY 720 (975)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999988
No 49
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=99.79 E-value=1.5e-18 Score=187.65 Aligned_cols=113 Identities=18% Similarity=0.378 Sum_probs=84.6
Q ss_pred EEEecCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCccccchHHHHHHHH
Q 007251 187 VVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFY 266 (611)
Q Consensus 187 ~Ve~~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~~y 266 (611)
+|--.=|.|+|++||||+.+++.+|++||.+|..|++|......++.|+.+..-+.
T Consensus 2 ~ITt~~pY~Ng~lHlGH~~~~l~ADv~aR~~r~~G~~v~~~tGtDehG~~i~~~A~------------------------ 57 (391)
T PF09334_consen 2 YITTPIPYPNGDLHLGHLYPYLAADVLARYLRLRGHDVLFVTGTDEHGSKIETAAE------------------------ 57 (391)
T ss_dssp EEEEEEEETSSS-BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEE-SSHHHHHHHH------------------------
T ss_pred EEecCCCCCCCCCCCChhHHHHHHHHHHHHHhhcccceeeEEecchhhHHHHHHHH------------------------
Confidence 45555688999999999999999999999999999999999999998875543221
Q ss_pred HHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHhcCCeeeecc---cccccCcHHHHHHHHH
Q 007251 267 RRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKG---ESFYNPYIPGVIDELS 343 (611)
Q Consensus 267 ~~~~~~~~~d~~~~~~a~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~LgV~f~~~~---Es~y~~~v~~vi~~L~ 343 (611)
+. .. +| +++|+.....|++.+++|||.+|.+. +..|...+++++++|.
T Consensus 58 ----~~-g~------------------~p------~~~~~~~~~~~~~~~~~~~I~~D~F~rTt~~~h~~~v~~i~~~L~ 108 (391)
T PF09334_consen 58 ----KQ-GI------------------DP------EEFCDKYSAKFKELLEALNISYDRFIRTTDDRHKEFVQEIFKRLY 108 (391)
T ss_dssp ----HT-TS-------------------H------HHHHHHHHHHHHHHHHHTT---SEEEETTSHHHHHHHHHHHHHHH
T ss_pred ----Hc-CC------------------CH------HHHHHHHHHHHHHHHHHcCCCCcceeCCCCHHHHHHHHHHHHHHH
Confidence 00 11 12 35677788899999999999997553 4567788999999999
Q ss_pred hCCCceeec
Q 007251 344 KQGLVEESQ 352 (611)
Q Consensus 344 ~~G~~~e~d 352 (611)
++|++|+.+
T Consensus 109 ~~G~I~~~~ 117 (391)
T PF09334_consen 109 DNGYIYKRE 117 (391)
T ss_dssp HTTSEEEEE
T ss_pred hcCceeecc
Confidence 999999754
No 50
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=99.78 E-value=1.1e-16 Score=191.82 Aligned_cols=139 Identities=13% Similarity=0.088 Sum_probs=99.1
Q ss_pred eeeeEEcCCCceeeeccCCcccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhcCcchhhhhhccC-CCCCcccc
Q 007251 436 GFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKN-NRLTNYTF 514 (611)
Q Consensus 436 ~~g~V~~~dG~kmSkR~G~~v~l~dLldea~~~a~~~~~~r~~~~~~~~~e~~~~a~~vg~~avRy~~L~~-~~~~~~~F 514 (611)
.+|||++.+|+|||||+||+|++.|++++ +|.|++||++++. ...+|++|
T Consensus 527 ~hG~v~d~~G~KMSKSkGNvIdP~dvIe~-----------------------------yGaDalR~~L~~~~~~g~D~~f 577 (1052)
T PRK14900 527 LHPMVRDEKGQKMSKTKGNVIDPLVITEQ-----------------------------YGADALRFTLAALTAQGRDIKL 577 (1052)
T ss_pred ecccEECCCCCCccCCCCCCCCHHHHHHH-----------------------------hCcHHHHHHHHhcCCCCCCCcc
Confidence 34899988999999999999999999998 7999999999987 46789999
Q ss_pred cccccccccCChHHHHHHHHHHHHHHHHHhCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Q 007251 515 SFDQMLNDKGNTAVYLLYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYL 594 (611)
Q Consensus 515 d~d~~~~~~gnt~~ylqYa~aRi~SIlrKa~~~~~~~~~~~~~~l~~~~e~~L~~~l~~fp~~v~~a~~~~~P~~l~~yL 594 (611)
+++.+.... +...-+-+ .+|...+..+.. ....... ....+ .+.+++++..+......+.+++++++.+.+++.+
T Consensus 578 s~~~l~~~~-~f~nkl~N-~~R~~~~~~~~~-~~~~~~~-~~~~~-~~~D~wils~l~~~i~~v~~~~e~y~f~~A~~~i 652 (1052)
T PRK14900 578 AKERIEGYR-AFANKLWN-ASRFALMNLSGY-QERGEDP-ARLAR-TPADRWILARLQRAVNETVEALEAFRFNDAANAV 652 (1052)
T ss_pred cHHHHHHHH-HHHHHHHH-HHHHHHHhhhcc-Ccccccc-ccccc-CHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 999874332 33332333 356554322211 0000000 00112 3557789999999999999999999999999999
Q ss_pred HHHH--HHHhchhhcc
Q 007251 595 YNLS--EYFTRFYSNC 608 (611)
Q Consensus 595 ~~La--~~fn~fY~~~ 608 (611)
+++. ...|.|.+.+
T Consensus 653 ~~f~~~~~~n~Yie~~ 668 (1052)
T PRK14900 653 YAFVWHELCDWYIELA 668 (1052)
T ss_pred HHHHHHhhhHHHHHhc
Confidence 9997 3444444433
No 51
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=99.77 E-value=5.2e-18 Score=186.32 Aligned_cols=245 Identities=17% Similarity=0.203 Sum_probs=166.4
Q ss_pred eEEEEecCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCccccchHHHHHH
Q 007251 185 KAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQE 264 (611)
Q Consensus 185 kV~Ve~~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~ 264 (611)
+|.+ =-.|.|||+|||||+|++++--..|| ..-|-=+.| |.|...
T Consensus 4 ~vrt-RFAPSPTG~lHiG~artAL~n~l~Ar--~~gG~fiLR---IEDTD~----------------------------- 48 (513)
T PRK14895 4 NVIT-RFAPSPTGFLHIGSARTALFNYLFAR--HHNGKFLLR---IEDTDK----------------------------- 48 (513)
T ss_pred CeeE-eeCCCCCCCccHHHHHHHHHHHHHHH--HcCCEEEEE---ECCCCc-----------------------------
Confidence 3444 34699999999999999999999988 344444444 333211
Q ss_pred HHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHhcCCeeee--cccccccCcHHHHHHHH
Q 007251 265 FYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEE--KGESFYNPYIPGVIDEL 342 (611)
Q Consensus 265 ~y~~~~~~~~~d~~~~~~a~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~LgV~f~~--~~Es~y~~~v~~vi~~L 342 (611)
. +....+.+.+.++|+.||+..|. +..|.+.+...+++++|
T Consensus 49 ------~-------------------------------R~~~~~~~~i~~~L~WLGl~wDe~py~QSeR~~~Y~~~a~~L 91 (513)
T PRK14895 49 ------E-------------------------------RSTKEAVEAIFSGLKWLGLDWNGEVIFQSKRNNLYKEAALKL 91 (513)
T ss_pred ------c-------------------------------ccChHHHHHHHHHHHHcCCCCCCCceeEeCcHHHHHHHHHHH
Confidence 0 01122334566688888888752 22344444567888888
Q ss_pred HhCCCceee-------------------------------------ccc--EEEecc------------C-------CCC
Q 007251 343 SKQGLVEES-------------------------------------QGA--RVIFIE------------G-------VNI 364 (611)
Q Consensus 343 ~~~G~~~e~-------------------------------------dGa--~~~~~~------------g-------~~~ 364 (611)
.++|.+|.. .+. +-|+++ | .-.
T Consensus 92 i~~G~AY~CfCt~eel~~~r~~~~~~~~~~~Y~~~cr~~~~~~~~~~~~~~iR~k~p~~~~~~~~D~v~G~~~~~~~~~~ 171 (513)
T PRK14895 92 LQNGKAYYCFTRQEEIERQRQQALENKQHFIFNSEWRDKDPSIYPTDIKPVIRLKTPREGSITIHDTLQGEVVIENSHID 171 (513)
T ss_pred HHcCCeEEecCcHHHHHHHHHhhhccCCCCCCChhhcccChhhhhcCCCeeEEEEcCCCCceEEEeecccceecccccCC
Confidence 888888720 011 112221 1 125
Q ss_pred CeEEEccCCcccccCcchhHHHhhhhccCCCeEEEEEeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEeeeeEEcCC
Q 007251 365 PLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGED 444 (611)
Q Consensus 365 d~Vl~ksDG~~tY~t~DiA~~~~r~~~~~~d~iIyV~g~dq~~hf~~l~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~d 444 (611)
|.||+|+||+|||.+ |++.++. ..+++++| +|.||..|.+++..+++++|+. .+.+.|+++ |++.+
T Consensus 172 D~Vi~RsDG~ptY~~---a~vVDD~-~m~ithVI--RG~d~~~~t~~q~~l~~aLG~~------~p~~~H~pl--v~~~~ 237 (513)
T PRK14895 172 DMVLLRADGTATYML---AVVVDDH-DMGITHII--RGDDHLTNAARQLAIYQAFGYA------VPSMTHIPL--IHGAD 237 (513)
T ss_pred CcEEEEeCCCcchhh---HHHHHHH-hcCCCEEE--ECchHhhhHHHHHHHHHHcCCC------CCeEEEEEe--EEcCC
Confidence 899999999999996 4778887 46999998 9999999999999999999984 468999976 88899
Q ss_pred CceeeeccCCcccHHHHHHHHHH-H-HHHHHHHhcCCCCCCHHHHHHHHhhcCc-chhhhhhccCCCCCccccccccccc
Q 007251 445 GKRLRTRFSEVVRLVDLLDEAKN-R-SKAVLIERGKDKEWTEEELEQTAEAVGY-GAAKYFDLKNNRLTNYTFSFDQMLN 521 (611)
Q Consensus 445 G~kmSkR~G~~v~l~dLldea~~-~-a~~~~~~r~~~~~~~~~e~~~~a~~vg~-~avRy~~L~~~~~~~~~Fd~d~~~~ 521 (611)
|+|||||.|. +.+.++.+++.. . ..+.+..-| |+..+. +.+.. +.+..|.+.+-..++..||++++..
T Consensus 238 g~KLSKR~g~-~~i~~~r~~G~~Peai~n~la~LG----~s~~~~----e~~~~~el~~~F~~~~v~~s~~~FD~~KL~w 308 (513)
T PRK14895 238 GAKLSKRHGA-LGIEAYKDMGYLPESLCNYLLRLG----WSHGDD----EIISMTQAIDWFNLDSLGKSPSKLDFAKMNS 308 (513)
T ss_pred CCccccccCc-hhHHHHHHCCCCHHHHHHHHHHhC----CCCCCc----CCCCHHHHHhhCCHHhCcCCcCcCCHHHHHH
Confidence 9999999995 478888876543 2 233333212 221100 01222 2467888988888999999999988
Q ss_pred ccC
Q 007251 522 DKG 524 (611)
Q Consensus 522 ~~g 524 (611)
+|+
T Consensus 309 lN~ 311 (513)
T PRK14895 309 LNA 311 (513)
T ss_pred HHH
Confidence 774
No 52
>PLN02943 aminoacyl-tRNA ligase
Probab=99.76 E-value=1.3e-16 Score=189.69 Aligned_cols=131 Identities=15% Similarity=0.185 Sum_probs=94.3
Q ss_pred CceEEEEecCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCccccchHHHH
Q 007251 183 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 262 (611)
Q Consensus 183 ~~kV~Ve~~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l 262 (611)
+++.+|...-||+||.|||||+++.++.|+++|..+..||+|....-.+.+|-.+...+..
T Consensus 87 ~~~f~i~~pPP~~tG~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gl~~e~~vek------------------- 147 (958)
T PLN02943 87 GDPFVIPMPPPNVTGSLHMGHAMFVTLEDIMVRYNRMKGRPTLWIPGTDHAGIATQLVVEK------------------- 147 (958)
T ss_pred CCCEEEecCCCCCCCchhHHHHHHHHHHHHHHHHHHhcCCeeecCCCCCcccchhHHHHHH-------------------
Confidence 4458888888999999999999999999999999999999999988888877644433211
Q ss_pred HHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeccc-----ccccCcHHH
Q 007251 263 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-----SFYNPYIPG 337 (611)
Q Consensus 263 ~~~y~~~~~~~~~d~~~~~~a~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~LgV~f~~~~E-----s~y~~~v~~ 337 (611)
.+.+.+. ++ .+. |-++.++..+++++.+...+++.+++||+.+||..+ ..|...+.+
T Consensus 148 --~l~~~~~----~~--~~~----------~re~f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~~ 209 (958)
T PLN02943 148 --MLASEGI----KR--TDL----------GRDEFTKRVWEWKEKYGGTITNQIKRLGASCDWSRERFTLDEQLSRAVVE 209 (958)
T ss_pred --HHHHcCC----Ch--hhC----------CHHHHHHHHHHHHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHHHHH
Confidence 0110000 00 000 111223333456677788899999999999998544 244567999
Q ss_pred HHHHHHhCCCcee
Q 007251 338 VIDELSKQGLVEE 350 (611)
Q Consensus 338 vi~~L~~~G~~~e 350 (611)
++.+|.++|++|+
T Consensus 210 ~F~~l~~~Gliyr 222 (958)
T PLN02943 210 AFVRLHEKGLIYQ 222 (958)
T ss_pred HHHHHHHCCCEEe
Confidence 9999999999984
No 53
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=99.74 E-value=5.9e-16 Score=183.62 Aligned_cols=163 Identities=17% Similarity=0.203 Sum_probs=111.9
Q ss_pred EEEEeCCccc-cHHHH-HHHHHHcCCCCCCCCCCCcEEEEeeeeEEcCCCceeeeccCCcccHHHHHHHHHHHHHHHHHH
Q 007251 398 IYVTDVGQQL-HFDMV-FSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIE 475 (611)
Q Consensus 398 IyV~g~dq~~-hf~~l-~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~dG~kmSkR~G~~v~l~dLldea~~~a~~~~~~ 475 (611)
+|+.|.||.. +|..+ +..+...|.. ++...+. +|+|++.+|+|||||+||+|++.|++++
T Consensus 548 l~~~G~Di~r~Wf~~~l~~~~~~~g~~----P~k~vl~---HG~vld~~G~KMSKSlGNvIdP~~ii~~----------- 609 (912)
T PRK05743 548 LYLEGSDQHRGWFQSSLLTSVATRGKA----PYKQVLT---HGFTVDGKGRKMSKSLGNVIDPQDVIKK----------- 609 (912)
T ss_pred EEEecccccchHHHHHHHHHHHhcCCC----ccceeEE---eeeEECCCCCCCCCCCCCcCCHHHHHHh-----------
Confidence 5777888764 55543 2333334543 3333333 4889988999999999999999999998
Q ss_pred hcCCCCCCHHHHHHHHhhcCcchhhhhhccCCCCCcccccccccccccCChHHHHHHHHHHHHHHHHHh--C-CChhhhh
Q 007251 476 RGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHARICSIIRKS--G-KDIEELK 552 (611)
Q Consensus 476 r~~~~~~~~~e~~~~a~~vg~~avRy~~L~~~~~~~~~Fd~d~~~~~~gnt~~ylqYa~aRi~SIlrKa--~-~~~~~~~ 552 (611)
+|+|++||++++..+.+|++|+.+.+.... +.. .++...+|-. + .+.....
T Consensus 610 ------------------yGaDalR~~ll~~~~~~D~~~s~~~l~~~~-~~~-------~kl~N~~rf~~~nl~~~~~~~ 663 (912)
T PRK05743 610 ------------------YGADILRLWVASTDYSGDVRISDEILKQVA-EAY-------RRIRNTLRFLLGNLNDFDPAK 663 (912)
T ss_pred ------------------cChHHHHHHHHhcCCCCCeeecHHHHHHHH-HHH-------HHHHHHHHHHHhCccCCCccc
Confidence 799999999999888999999988765411 111 1222222211 1 0100000
Q ss_pred h-cCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH-HHHhchh
Q 007251 553 K-TGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLS-EYFTRFY 605 (611)
Q Consensus 553 ~-~~~~~l~~~~e~~L~~~l~~fp~~v~~a~~~~~P~~l~~yL~~La-~~fn~fY 605 (611)
. .....+ .+.++.++..+..+.+.+.+++++++.+.+++.+++++ ..+.++|
T Consensus 664 ~~~~~~~l-~~~D~~il~~l~~~~~~v~~~~e~~~f~~a~~~l~~f~~~~ls~~Y 717 (912)
T PRK05743 664 DAVPYEEL-LELDRWALHRLAELQEEILEAYENYDFHKVYQKLHNFCSVDLSAFY 717 (912)
T ss_pred ccCCchhC-CHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhhhceee
Confidence 0 000112 45678899999999999999999999999999999998 4777766
No 54
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=99.73 E-value=1.8e-17 Score=180.08 Aligned_cols=196 Identities=16% Similarity=0.202 Sum_probs=136.8
Q ss_pred HHHHHHHHHHHHhcCCeee-ecccccccCcHHHHHHHHHhCCCcee----------------ecc---------------
Q 007251 306 EISRKEFDKVYKRLRVDLE-EKGESFYNPYIPGVIDELSKQGLVEE----------------SQG--------------- 353 (611)
Q Consensus 306 ~~~~~~~~~~~~~LgV~f~-~~~Es~y~~~v~~vi~~L~~~G~~~e----------------~dG--------------- 353 (611)
+.+.+.+.++|++|||++| ++.||...+.+.++++.|.++|++|. ..|
T Consensus 51 ~~~~~~I~e~L~wLGI~~De~y~QSer~~~y~~~~e~L~e~G~AY~C~Ct~eel~~~r~~~~~~~~~~~y~~~cr~l~~~ 130 (445)
T PRK12558 51 QEYADAIAEDLKWLGINWDRTFRQSDRFDRYDEAAEKLKAAGRLYPCYETPEELELKRKIQLSRGLPPIYDRAALKLTEE 130 (445)
T ss_pred HHHHHHHHHHHHHcCCCCCccccHHHHHHHHHHHHHHHHHCCCEEEecCchHHHHHHHHHHHhCCCCCCCCcccccCCHH
Confidence 4456778889999999996 56676555678999999999999883 011
Q ss_pred ------------cEEEecc-----------C-------CCCCeEEEccCCcccccCcchhHHHhhhhccCCCeEEEEEeC
Q 007251 354 ------------ARVIFIE-----------G-------VNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDV 403 (611)
Q Consensus 354 ------------a~~~~~~-----------g-------~~~d~Vl~ksDG~~tY~t~DiA~~~~r~~~~~~d~iIyV~g~ 403 (611)
++-|+++ | .-.|.||.|+||.|||.. |...+-. ..+.+|+| .|.
T Consensus 131 ~~~~~~~~g~~~~iR~k~~~~~~~~~D~i~G~~~~~~~~~~D~Vi~R~dg~PtY~f---A~vVDD~-~m~ITHVi--RG~ 204 (445)
T PRK12558 131 EKAALEAEGRKPHWRFKLDDEPISWDDLIRGEQSIDAASLSDPVLIRADGSYLYTL---PSVVDDI-DMGITHII--RGE 204 (445)
T ss_pred HHHhHHhcCCCceEEEecCCCceEEEEEeeeEeecccccCCCeEEEecCCCccccc---cceeccc-cCCCCEEE--ech
Confidence 1112211 1 125889999999999974 4444443 35778885 899
Q ss_pred CccccHHHHHHHHHHcCCCCCCCCCCCcEEEEeeeeEEcCCCceeeeccCCcccHHHHHHHHHH--HHHHHHHHhcCCCC
Q 007251 404 GQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKN--RSKAVLIERGKDKE 481 (611)
Q Consensus 404 dq~~hf~~l~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~dG~kmSkR~G~~v~l~dLldea~~--~a~~~~~~r~~~~~ 481 (611)
||...-+....+.+++||. .+.+.|+ .++++++|+|+|||.|. +++.++.+++.. ...+.+..-|
T Consensus 205 d~l~~t~~q~~l~~alg~~------~P~f~H~--pli~~~~g~KLSKR~g~-~sv~~~r~~G~~Peai~n~la~lG---- 271 (445)
T PRK12558 205 DHVTNTAVQIQIFEALGAK------PPVFAHL--SLLTGADGKGLSKRLGG-LSIRSLREDGIEPMAIASLLARLG---- 271 (445)
T ss_pred hhhhCCHHHHHHHHHhCCC------CCeEEEc--ccccCCCcccccccCCC-cCHHHHHHCCCCHHHHHHHHHHHc----
Confidence 9977666666888999995 3689999 55899999999999994 689988887543 2333333322
Q ss_pred CCHHHHHHHHhhcCc-chhhhhhccCCCCCcccccccccccccC
Q 007251 482 WTEEELEQTAEAVGY-GAAKYFDLKNNRLTNYTFSFDQMLNDKG 524 (611)
Q Consensus 482 ~~~~e~~~~a~~vg~-~avRy~~L~~~~~~~~~Fd~d~~~~~~g 524 (611)
|+..+ ++ .+.. +.+..|.+.+-..++..||.+++..+|+
T Consensus 272 ~s~~~-~e---~~~~~eli~~F~l~~~~~~~~~fd~~KL~w~N~ 311 (445)
T PRK12558 272 TSDPV-EP---YTSMEELAESFDLSSFSRAPAKFDPEDLERLNA 311 (445)
T ss_pred CCCCC-cc---cCCHHHHHHhCCHhhCCCccccCCHHHHHHHHH
Confidence 22110 00 0121 2467889988888999999999988874
No 55
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=99.73 E-value=5.5e-17 Score=179.91 Aligned_cols=256 Identities=16% Similarity=0.160 Sum_probs=156.4
Q ss_pred ceEEEEecCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCC-CC----ccccch
Q 007251 184 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPN-SE----DANETA 258 (611)
Q Consensus 184 ~kV~Ve~~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~G~Q~~~l~~~~~~~~~~-~~----~~~~~~ 258 (611)
++++|+-.=. |+|++||||+|..+.+|+++|.|+..|++|..++..+|+.. +.+ .|+ .+ .+-|.+
T Consensus 18 ~~~~~~tg~~-psG~~HiG~~~e~~~~d~v~r~~r~~g~~~~~i~~~Dd~D~-lRK--------vp~~~p~~~~~ylG~P 87 (515)
T TIGR00467 18 NLYTVASGIT-PSGHIHIGNFREVITADAIARALRDSGSEARFIYIADNYDP-LRK--------VYPFLPEELETYLGMP 87 (515)
T ss_pred CeEEEecCCC-CCCCccccchhhhhHHHHHHHHHHHcCCCEEEEEEEcCCcc-ccc--------ccccccHHHHHhCCCc
Confidence 3688865444 99999999999999999999999999999999999999964 111 121 00 001111
Q ss_pred HHHHHHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeccc-ccc-cCcHH
Q 007251 259 IGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-SFY-NPYIP 336 (611)
Q Consensus 259 i~~l~~~y~~~~~~~~~d~~~~~~a~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~LgV~f~~~~E-s~y-~~~v~ 336 (611)
|.. -.|| +-. -..+.+.+...|.+.++.|||++++.+- ..| ++...
T Consensus 88 l~~------------vpdp------------------~g~--~~s~~~h~~~~~~~~l~~~gi~~e~~s~te~Y~sG~~~ 135 (515)
T TIGR00467 88 LTR------------IPDP------------------EGC--KTSYAEHFLIPFLESLPVLGINPEFIRASKQYTSGLYA 135 (515)
T ss_pred cee------------cCCC------------------CCC--cHHHHHHHHHHHHHHHHHcCCeEEEEEHHHhhhcCChH
Confidence 110 0122 111 1456788889999999999999865432 344 33322
Q ss_pred HHHH-HHHhCCCc----------eeecccEEEe--cc--CCCCCeEE-EccCCcccccC-------cch----hHHHhhh
Q 007251 337 GVID-ELSKQGLV----------EESQGARVIF--IE--GVNIPLII-VKSDGGFNYAS-------TDL----AALWYRL 389 (611)
Q Consensus 337 ~vi~-~L~~~G~~----------~e~dGa~~~~--~~--g~~~d~Vl-~ksDG~~tY~t-------~Di----A~~~~r~ 389 (611)
+.+. .|+...-+ ...++..-|. ++ |.....++ ...+.+.+|.+ .|+ +-.-||+
T Consensus 136 ~~i~~~L~~~~~I~~il~~~~~~~~~~~~~P~~pic~~cGrv~~~~~~~~~~~~v~Y~c~cG~~g~~~~~~g~~KL~Wkv 215 (515)
T TIGR00467 136 SQIKIALDHRKEISEILNEYRTSKLEENWYPISVFCENCGRDTTTVNNYDNEYSIEYSCECGNQESVDIYTGAIKLPWRV 215 (515)
T ss_pred HHHHHHHHhHHHHHHHHHHhcCCccCCCceeeeeecCCcCccCceEEEecCCceEEEEcCCCCEEEEeecCCCcccCCCC
Confidence 2222 22222211 1223444332 12 32211222 11223455543 222 1233444
Q ss_pred hccCCCeEE-----EEEeCCccc----cHHHHHHHHHHcCCCCCCCCCCCcEEEEeeeeE-EcCCCceeeeccCCcccHH
Q 007251 390 NEEKAEWII-----YVTDVGQQL----HFDMVFSAAKRAGWLSADDSTYPKASHVGFGLV-LGEDGKRLRTRFSEVVRLV 459 (611)
Q Consensus 390 ~~~~~d~iI-----yV~g~dq~~----hf~~l~~~~~~lG~~~~~~~~~~~~~Hv~~g~V-~~~dG~kmSkR~G~~v~l~ 459 (611)
+|.+-|.+ =-+|.||+. |-.....+.+.+|..| + .++.|+|| +..+|+|||||+||+++++
T Consensus 216 -dW~~RW~~lgV~~Ep~GkDH~~~ggsy~~~~~ia~~~l~~~~---P-----~~~~ye~v~L~~~g~KMSKS~Gn~itl~ 286 (515)
T TIGR00467 216 -DWPARWKIEKVTFEPAGKDHAAAGGSYDTGVNIAKEIFQYSP---P-----VTVQYEWISLKGKGGKMSSSKGDVISVK 286 (515)
T ss_pred -CcHhhHhhhCcccccCCCCccCccCCchhHHHHHHHHhCCCC---C-----cCcEEEEEEEcCCCccccCCCCCCccHH
Confidence 33333221 236888876 4556544446887643 1 22345666 4456789999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhcCcchhhhhhccCCCCCccccccccc
Q 007251 460 DLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQM 519 (611)
Q Consensus 460 dLldea~~~a~~~~~~r~~~~~~~~~e~~~~a~~vg~~avRy~~L~~~~~~~~~Fd~d~~ 519 (611)
|++++ ++++++||++++.++.++++||++.+
T Consensus 287 dll~~-----------------------------~~pdalR~~~l~~~~~~~ldFd~~~l 317 (515)
T TIGR00467 287 DVLEV-----------------------------YTPEITRFLFARTKPEFHISFDLDVI 317 (515)
T ss_pred HHHHH-----------------------------cCHHHHHHHHhccCCCCCCcCCHHHH
Confidence 99998 58999999999999999999999854
No 56
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=99.73 E-value=1e-15 Score=183.53 Aligned_cols=133 Identities=19% Similarity=0.231 Sum_probs=95.2
Q ss_pred CCceEEEEecCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCccccchHHH
Q 007251 182 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 261 (611)
Q Consensus 182 ~~~kV~Ve~~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~ 261 (611)
..++.+|...-|||||.|||||+++.++.|+++|..+..||+|....-.+.+|-.+...++.-
T Consensus 58 ~~~~f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~v~~~~G~D~~Gl~~~~~vE~~----------------- 120 (995)
T PTZ00419 58 SGKKFVIVLPPPNVTGYLHIGHALTGAIQDSLIRYHRMKGDETLWVPGTDHAGIATQVVVEKK----------------- 120 (995)
T ss_pred CCCeEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCCchhhHHHHHHH-----------------
Confidence 356789999999999999999999999999999999999999999888888875443222110
Q ss_pred HHHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeccc-----ccccCcHH
Q 007251 262 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-----SFYNPYIP 336 (611)
Q Consensus 262 l~~~y~~~~~~~~~d~~~~~~a~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~LgV~f~~~~E-----s~y~~~v~ 336 (611)
+..+.+ .++ . +-|.++.++..+++++.+...+++.+++||+.+||..+ ..|...+.
T Consensus 121 ---l~~~~~----~~~--~----------~~~~e~f~~~~~~w~~~~~~~~~~~~~~lG~~~DW~~~~~T~d~~~~~~v~ 181 (995)
T PTZ00419 121 ---LMKEEN----KTR--H----------DLGREEFLKKVWEWKDKHGNNICNQLRRLGSSLDWSREVFTMDEQRSKAVK 181 (995)
T ss_pred ---HHHhcC----CCh--H----------HcCHHHHHHHHHHHHHHHHHHHHHHHHHhCceeeCCCCcCcCCHHHHHHHH
Confidence 000000 000 0 01122333344455677778899999999999998543 23445789
Q ss_pred HHHHHHHhCCCcee
Q 007251 337 GVIDELSKQGLVEE 350 (611)
Q Consensus 337 ~vi~~L~~~G~~~e 350 (611)
+++..|.++|++|+
T Consensus 182 ~~F~~l~~~Gliyr 195 (995)
T PTZ00419 182 EAFVRLYEDGLIYR 195 (995)
T ss_pred HHHHHHHHCCCEEe
Confidence 99999999999983
No 57
>PF03485 Arg_tRNA_synt_N: Arginyl tRNA synthetase N terminal domain; InterPro: IPR005148 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found at the N terminus of Arginyl tRNA synthetase, also called additional domain 1 (Add-1). It is about 140 residues long and it has been suggested that this domain will be involved in tRNA recognition [].; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1F7V_A 1F7U_A 1BS2_A 2ZUE_A 2ZUF_A 1IQ0_A 3GDZ_B.
Probab=99.72 E-value=9.1e-18 Score=143.18 Aligned_cols=82 Identities=39% Similarity=0.596 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHhcC-CCCCCCccccccc-CCCCcccccchhHHHHHHhcCCCCCCCChHHHHHHHHHhCCCCCCcceeEE
Q 007251 70 ELEKVFDLALKATV-PNETDVRPLIAAC-TAKFGDYQCNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPPSEMIESCSV 147 (611)
Q Consensus 70 ~~~~~i~~a~~~~~-~~~~~~~~~v~~~-~~~~GD~~~n~A~~lak~~k~~~~~~~~P~~iA~~l~~~l~~~~~i~~vev 147 (611)
.+++.|++++.+.+ .......+.|+.| ++++||||||+||.+||.+| ++|++||++|++.|..++.|++|+|
T Consensus 2 ~l~~~i~~~l~~~~~~~~~~~~~~i~~~~~~~~GD~~~n~a~~lak~~k------~~P~~iA~~i~~~l~~~~~i~~vev 75 (85)
T PF03485_consen 2 QLKKAISEALKKAFGIDLEEIEIQIEKPPNPKFGDYQTNIAFRLAKKLK------KNPREIAEEIAEKLEKSPIIEKVEV 75 (85)
T ss_dssp HHHHHHHHHHHHCHSTTCCCHGGGEEE-SSGGG-SEEEEHHHHHHHHTT------S-HHHHHHHHHHCHCTTTTEEEEEE
T ss_pred hHHHHHHHHHHHHhcccccccceEEEcCCCCCceeeeccchHHHHHHcC------CCHHHHHHHHHHhcCCCCCEEEEEE
Confidence 35555666665542 1122345667755 88999999999999999999 9999999999999988888999999
Q ss_pred ecCceeEeec
Q 007251 148 AGPGFVNVVL 157 (611)
Q Consensus 148 agpGfIN~~l 157 (611)
+|||||||+|
T Consensus 76 ~gpGFiN~~L 85 (85)
T PF03485_consen 76 AGPGFINFFL 85 (85)
T ss_dssp ETTTEEEEEE
T ss_pred cCCcEEEEeC
Confidence 9999999986
No 58
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=99.70 E-value=3.5e-15 Score=177.56 Aligned_cols=135 Identities=14% Similarity=0.146 Sum_probs=98.7
Q ss_pred eeeEEcCCCceeeeccCCcccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhcCcchhhhhhccCCCCCcccccc
Q 007251 437 FGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSF 516 (611)
Q Consensus 437 ~g~V~~~dG~kmSkR~G~~v~l~dLldea~~~a~~~~~~r~~~~~~~~~e~~~~a~~vg~~avRy~~L~~~~~~~~~Fd~ 516 (611)
+|+|++.+|+|||||+||+|++.+++++ +|+|++||++++..+.+|++|++
T Consensus 620 HG~vld~~G~KMSKSlGNvIdP~~ii~~-----------------------------yGaD~lRl~lls~~~~~D~~fs~ 670 (961)
T PRK13804 620 HGFTLDEKGEKMSKSLGNTVSPQDVIKQ-----------------------------SGADILRLWVASVDYSDDQRIGK 670 (961)
T ss_pred eccEECCCCCCccCCCCCcCCHHHHHHh-----------------------------cCHHHHHHHHHhCCCCCCcccCH
Confidence 4889988999999999999999999998 79999999999988899999999
Q ss_pred cccccccCChHHHHHHHHHHHHHHHHHhCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Q 007251 517 DQMLNDKGNTAVYLLYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYN 596 (611)
Q Consensus 517 d~~~~~~gnt~~ylqYa~aRi~SIlrKa~~~~~~~~~~~~~~l~~~~e~~L~~~l~~fp~~v~~a~~~~~P~~l~~yL~~ 596 (611)
+.+... .+....+.++..++.+.+.+.......+ ....+ .+.++.|+..+..+.+.+.+++++++.+.+++.+++
T Consensus 671 ~~l~~~-~~~~~kL~N~~rf~l~nl~~~~~~~~~~---~~~~~-~~~D~wil~~l~~~~~~v~~~~e~y~f~~a~~~l~~ 745 (961)
T PRK13804 671 EILKQV-SETYRKLRNTLRWLLGNLAHFDPGEDVV---AYADL-PELERYMLHRLNELDGLVREAYDAYDFKRIYKALVN 745 (961)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHhccccCCcccccC---Chhhc-CHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 976442 1222233333322222222211000000 00112 345678999999999999999999999999999999
Q ss_pred HH-HHHhchh
Q 007251 597 LS-EYFTRFY 605 (611)
Q Consensus 597 La-~~fn~fY 605 (611)
++ ..+.+||
T Consensus 746 f~~~~lsn~Y 755 (961)
T PRK13804 746 FVNVDLSAFY 755 (961)
T ss_pred HHHHHHHHHH
Confidence 98 6887776
No 59
>PLN02843 isoleucyl-tRNA synthetase
Probab=99.69 E-value=6.9e-15 Score=175.17 Aligned_cols=172 Identities=16% Similarity=0.192 Sum_probs=110.5
Q ss_pred EEEEeCCccc-cHHHH-HHHHHHcCCCCCCCCCCCcEEEEeeeeEEcCCCceeeeccCCcccHHHHHHHHHHHHHHHHHH
Q 007251 398 IYVTDVGQQL-HFDMV-FSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIE 475 (611)
Q Consensus 398 IyV~g~dq~~-hf~~l-~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~dG~kmSkR~G~~v~l~dLldea~~~a~~~~~~ 475 (611)
+++.|.||.. ||..+ +..+...|.. ++...+.| |+|++.+|+|||||.||+|++.|+++.... +
T Consensus 567 l~~eG~Di~rgWf~s~l~~~~~~~g~~----Pfk~v~~H---G~vld~~G~KMSKSlGNvI~p~~vi~~~~~-------~ 632 (974)
T PLN02843 567 LYLEGSDQHRGWFQSSLLTSVATKGKA----PYKSVLTH---GFVLDEKGFKMSKSLGNVVDPRLVIEGGKN-------Q 632 (974)
T ss_pred eeeeeccccchHHHHHHHHHHHhcCCC----ccceEEEe---ccEECCCCCCcCCCCCCcCCHHHHHhhccc-------c
Confidence 4566666654 45543 2333344543 33444555 889988999999999999999999994200 0
Q ss_pred hcCCCCCCHHHHHHHHhhcCcchhhhhhccCCCCCcccccccccccccCChHHHHHHHHHHHHHHHHHhCCChhhhh--h
Q 007251 476 RGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHARICSIIRKSGKDIEELK--K 553 (611)
Q Consensus 476 r~~~~~~~~~e~~~~a~~vg~~avRy~~L~~~~~~~~~Fd~d~~~~~~gnt~~ylqYa~aRi~SIlrKa~~~~~~~~--~ 553 (611)
+ .-.++|+|++||++++.+..+|+.|+.+.+.... -.+.|+.+.+|-.-.+..... .
T Consensus 633 ~-------------~~~~yGaD~lR~~l~~~~~~~d~~~s~~~l~~~~--------~~~~kl~n~~rf~lgnl~~~~~~~ 691 (974)
T PLN02843 633 K-------------QEPAYGADVLRLWVASVDYTGDVLIGPQILKQMS--------DIYRKLRGTLRYLLGNLHDWKPDN 691 (974)
T ss_pred c-------------cccccChHHHHHHHHhcccCCCceeCHHHHHHHH--------HHHHHHHHHHHHHHhCccCCCccc
Confidence 0 0002799999999999888999999988764321 122344444433211110000 0
Q ss_pred -cCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH-HHHhchh
Q 007251 554 -TGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLS-EYFTRFY 605 (611)
Q Consensus 554 -~~~~~l~~~~e~~L~~~l~~fp~~v~~a~~~~~P~~l~~yL~~La-~~fn~fY 605 (611)
.....+ .+.++.++..+..+.+.+.+++++++.+.+++.+++++ ..+.++|
T Consensus 692 ~~~~~~~-~~~D~wiLskL~~li~~v~~aye~y~f~~A~~~i~~f~~~dlsn~Y 744 (974)
T PLN02843 692 AVPYEDL-PSIDKYALFQLENVVNEIEESYDNYQFFKIFQILQRFTIVDLSNFY 744 (974)
T ss_pred ccCcccc-CHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhHHH
Confidence 000112 34578899999999999999999999999999999874 3344444
No 60
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=99.69 E-value=1.2e-14 Score=173.14 Aligned_cols=137 Identities=20% Similarity=0.229 Sum_probs=97.9
Q ss_pred CceEEEEecCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCccccchHHHH
Q 007251 183 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 262 (611)
Q Consensus 183 ~~kV~Ve~~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l 262 (611)
.++..|-..=||+||+||+||+++.++.|+++|..|..||+|.+..-....|+.+...+..+..+.+. .+
T Consensus 24 ~~kf~i~~ppPy~nG~lH~GH~~~~~~~D~~aRy~Rm~G~~vl~p~G~d~~G~pi~~~aek~~~~~~~-------~~--- 93 (938)
T TIGR00395 24 REKFFLTMAYPYLNGVMHAGHCRTFTIPEVSARFERMKGKNVLFPLGFHVTGTPILGLAELIKRRDEL-------TI--- 93 (938)
T ss_pred CCceEEecCCCCCCCCcccchhhhhhHHHHHHHHHHhcCCccCCCCccCCCCCchHHHHHHhhhhhhh-------cc---
Confidence 46799999999999999999999999999999999999999999988888888776554333211000 00
Q ss_pred HHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHH--HHHHHHHHHHHHHHHHhcCCeeeeccc-----ccccCcH
Q 007251 263 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAW--AQICEISRKEFDKVYKRLRVDLEEKGE-----SFYNPYI 335 (611)
Q Consensus 263 ~~~y~~~~~~~~~d~~~~~~a~~~~~~le~gd~e~~~~w--~~~~~~~~~~~~~~~~~LgV~f~~~~E-----s~y~~~v 335 (611)
+.|.. ..+. ++.+..+.+ +.+++.+...+++.+++||+.+||..+ ..|...+
T Consensus 94 -~~~~~---~~~i-----------------~~~~i~~~~~~~~~~~~~~~~~~~~~~~lG~s~DW~r~~~T~dp~y~~~v 152 (938)
T TIGR00395 94 -KNYTE---VHAI-----------------PREELLKFTDPEYIVEYFSREAESACKSMGYSIDWRRSFKTTDPYYDRFI 152 (938)
T ss_pred -ccchh---hccC-----------------CHHHHHhhcCHHHHHHHHHHHHHHHHHHhCceEECCCCccCCChhHHHHH
Confidence 00000 0000 111111221 355677778899999999999998643 3455679
Q ss_pred HHHHHHHHhCCCcee
Q 007251 336 PGVIDELSKQGLVEE 350 (611)
Q Consensus 336 ~~vi~~L~~~G~~~e 350 (611)
..++.+|.++|++|.
T Consensus 153 ~~~f~~L~e~G~iy~ 167 (938)
T TIGR00395 153 EWQMNKLKELGLIVK 167 (938)
T ss_pred HHHHHHHHHCCCEec
Confidence 999999999999983
No 61
>PLN02381 valyl-tRNA synthetase
Probab=99.69 E-value=1.6e-14 Score=173.08 Aligned_cols=132 Identities=19% Similarity=0.245 Sum_probs=95.3
Q ss_pred CceEEEEecCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCccccchHHHH
Q 007251 183 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 262 (611)
Q Consensus 183 ~~kV~Ve~~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l 262 (611)
.++..|...-||+||+|||||+++.++.|+++|+.+..||+|....-.+.+|-.+...+.. ..
T Consensus 127 ~~~f~i~~ppPy~nG~lHiGHa~~~ti~Dii~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek---~l-------------- 189 (1066)
T PLN02381 127 KPPFVIVLPPPNVTGALHIGHALTAAIEDTIIRWKRMSGYNALWVPGVDHAGIATQVVVEK---KL-------------- 189 (1066)
T ss_pred CCcEEEEeCCCCCCCCccHHHHHHHHHHHHHHHHHHhCCCcccccCCCCCCcChHHHHHHH---Hh--------------
Confidence 4568899999999999999999999999999999999999999999888888655433210 00
Q ss_pred HHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeccc-----ccccCcHHH
Q 007251 263 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-----SFYNPYIPG 337 (611)
Q Consensus 263 ~~~y~~~~~~~~~d~~~~~~a~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~LgV~f~~~~E-----s~y~~~v~~ 337 (611)
..+.+ .++ .+ -|.++.++..+++++.+...+++.+++||+.+||..+ ..|...+..
T Consensus 190 ---~~~~~----~~~--~~----------~~re~f~~~~~~~~~~~~~~~~~q~~~lG~s~Dw~~~~~T~d~~~~~~v~~ 250 (1066)
T PLN02381 190 ---MRERH----LTR--HD----------IGREEFVSEVWKWKDEYGGTILNQLRRLGASLDWSRECFTMDEQRSKAVTE 250 (1066)
T ss_pred ---HhhcC----CCh--hh----------CCHHHHHHHHHHHHHHHHHHHHHHHHHhCchhccCCccccCCHHHHHHHHH
Confidence 00000 000 00 0112223334455677778899999999999998544 244567999
Q ss_pred HHHHHHhCCCcee
Q 007251 338 VIDELSKQGLVEE 350 (611)
Q Consensus 338 vi~~L~~~G~~~e 350 (611)
++..|.++|++|+
T Consensus 251 ~F~~L~~~GlIyr 263 (1066)
T PLN02381 251 AFVRLYKEGLIYR 263 (1066)
T ss_pred HHHHHHHCCCEEe
Confidence 9999999999984
No 62
>PLN02882 aminoacyl-tRNA ligase
Probab=99.68 E-value=2.6e-14 Score=172.25 Aligned_cols=132 Identities=20% Similarity=0.204 Sum_probs=96.7
Q ss_pred CceEEEEecCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCccccchHHHH
Q 007251 183 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 262 (611)
Q Consensus 183 ~~kV~Ve~~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l 262 (611)
.++.++.-.-||+||++|+||+++.++.|+++|..+..||+|.+..-.+..|..+...+.. ..+-. ..+.|.+
T Consensus 37 ~~~f~~~dgPPyanG~~HiGH~~~~~ikDii~Ry~rm~G~~V~~~~GwD~hGlPiE~~vek---~lgi~---~~~~i~~- 109 (1159)
T PLN02882 37 LPEYIFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMTGHHVTRRFGWDCHGLPVEYEIDK---KLGIK---RRDDVLK- 109 (1159)
T ss_pred CCCEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCcccccCccCCCCcHHHHHHHH---HcCCC---Cccchhh-
Confidence 3468888999999999999999999999999999999999999999888888876544311 11100 0011110
Q ss_pred HHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHhcCCeeeecc-----cccccCcHHH
Q 007251 263 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKG-----ESFYNPYIPG 337 (611)
Q Consensus 263 ~~~y~~~~~~~~~d~~~~~~a~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~LgV~f~~~~-----Es~y~~~v~~ 337 (611)
-|-.+..+..+.++..+.+.+++.+++||+.+||.. +..|...+..
T Consensus 110 -----------------------------~g~~~f~~~c~~~~~~~~~~~~~~~~rlG~~~D~~~~y~T~d~~~~~~v~~ 160 (1159)
T PLN02882 110 -----------------------------MGIDKYNEECRSIVTRYSKEWEKTVTRTGRWIDFENDYKTMDPKFMESVWW 160 (1159)
T ss_pred -----------------------------cCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEECCCCcCcCCHHHHHHHHH
Confidence 011223344556777788889999999998887642 2345567999
Q ss_pred HHHHHHhCCCcee
Q 007251 338 VIDELSKQGLVEE 350 (611)
Q Consensus 338 vi~~L~~~G~~~e 350 (611)
++.+|.++|++|+
T Consensus 161 ~f~~l~~kGliyr 173 (1159)
T PLN02882 161 VFKQLFEKGLVYK 173 (1159)
T ss_pred HHHHHHHCCCEEe
Confidence 9999999999984
No 63
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=99.67 E-value=1.3e-14 Score=170.82 Aligned_cols=166 Identities=13% Similarity=0.198 Sum_probs=110.2
Q ss_pred EEEEeCCcc-cc--HHH-HHHHHHHcCCCCCCCCCCCcEEEEeeeeEEc----CCCc-----------------------
Q 007251 398 IYVTDVGQQ-LH--FDM-VFSAAKRAGWLSADDSTYPKASHVGFGLVLG----EDGK----------------------- 446 (611)
Q Consensus 398 IyV~g~dq~-~h--f~~-l~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~----~dG~----------------------- 446 (611)
+||.|.||. .| +.+ ...++...|+.+...|+...+. .|||++ ++|+
T Consensus 523 ~yi~G~dhailHLlyaRf~~~~l~~~~~~~~~~Pfk~l~~---~G~Vl~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ 599 (842)
T TIGR00396 523 LYIGGAEHAILHLLYARFWHKFLYDIGYVSTKEPFKKLIN---QGMVLGFYYPPNGKSPPDELTERDEKAKDKSGGELVV 599 (842)
T ss_pred EeeccHHHHHHHHHHHHHHHHHHHhccccCCCccHHHHhc---cceEEeeeecCCCCccChhhhccccccccccCCcccc
Confidence 455666662 23 222 2234455565443233433333 399998 8888
Q ss_pred ----eeeeccCCcccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhcCcchhhhhhccC-CCCCccccccccccc
Q 007251 447 ----RLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKN-NRLTNYTFSFDQMLN 521 (611)
Q Consensus 447 ----kmSkR~G~~v~l~dLldea~~~a~~~~~~r~~~~~~~~~e~~~~a~~vg~~avRy~~L~~-~~~~~~~Fd~d~~~~ 521 (611)
|||||+||+|++.|++++ +|.|++||+++.. .+..+++|+.+.+..
T Consensus 600 ~~~~KMSKS~GN~v~p~~ii~~-----------------------------ygaDalRl~~l~~~~~~~d~~~~~~~l~~ 650 (842)
T TIGR00396 600 VGYEKMSKSKGNGIDPQEIVKK-----------------------------HGADALRLYIMFMGPIAASLEWNDSGLEG 650 (842)
T ss_pred cchhhhhhcCCCcCCHHHHHHH-----------------------------cCchHHHHHHHhcCCcCCCCccCHHHHHH
Confidence 999999999999999998 7999999999965 678899998887643
Q ss_pred ccCChHHHHHHHHHHHHHHHHHhCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHH
Q 007251 522 DKGNTAVYLLYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLL-PNVVCEYLYNLSEY 600 (611)
Q Consensus 522 ~~gnt~~ylqYa~aRi~SIlrKa~~~~~~~~~~~~~~l~~~~e~~L~~~l~~fp~~v~~a~~~~~-P~~l~~yL~~La~~ 600 (611)
.. -.+.|+.++++............+...+ .+.+++|+..+.++-..+.++++++. .+.+...++++...
T Consensus 651 ~~--------~~l~kl~~~~~~~~~~~~~~~~~~~~~l-~~~d~~il~~l~~~i~~v~~~~e~y~~fn~ai~~l~~f~n~ 721 (842)
T TIGR00396 651 AR--------RFLDRVWNLFYNILGELDGKTYLTPTIL-EEAQKELRRDVHKFLKKVTEDLEKLESFNTAISAMMILLNA 721 (842)
T ss_pred HH--------HHHHHHHHHHHHHHhhhcccccCCcccC-CHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 21 1223454444432100000000000112 35678899999999999999999988 99999999999988
Q ss_pred Hhch
Q 007251 601 FTRF 604 (611)
Q Consensus 601 fn~f 604 (611)
++++
T Consensus 722 L~~~ 725 (842)
T TIGR00396 722 LYKA 725 (842)
T ss_pred HHhh
Confidence 7774
No 64
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.64 E-value=2e-15 Score=152.07 Aligned_cols=215 Identities=20% Similarity=0.182 Sum_probs=142.0
Q ss_pred cCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCccccchHHHHHHHHHHHh
Q 007251 191 SSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSK 270 (611)
Q Consensus 191 ~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~~ 270 (611)
-.|+|||+||+||+|++++....||- ..| ...--|.|... +
T Consensus 6 fAPsPtG~LHlG~~~~al~n~l~ar~--~~G---~~ilRieDtd~--------------~-------------------- 46 (239)
T cd00808 6 FAPSPTGFLHIGGARTALFNYLFARK--HGG---KFILRIEDTDQ--------------E-------------------- 46 (239)
T ss_pred eCCCCCCcccHHHHHHHHHHHHHHHH--cCC---eEEEEECcCCC--------------C--------------------
Confidence 36999999999999999999999885 334 22233444211 0
Q ss_pred cccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHhcCCeeee----------cccccccCcHHHHHH
Q 007251 271 NRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEE----------KGESFYNPYIPGVID 340 (611)
Q Consensus 271 ~~~~~d~~~~~~a~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~LgV~f~~----------~~Es~y~~~v~~vi~ 340 (611)
+ . ...+.+.+.++++.||+..|. +..|.+.+...++++
T Consensus 47 -r--~-----------------------------~~~~~~~i~~dL~wlGl~~d~~~~~~g~~~~~~QS~r~~~y~~~~~ 94 (239)
T cd00808 47 -R--S-----------------------------VPEAEEAILEALKWLGLDWDEGPDVGGPYGPYRQSERLEIYRKYAE 94 (239)
T ss_pred -C--C-----------------------------chHHHHHHHHHHHHcCCCCCcCCccCCCCCCEeeeCCHHHHHHHHH
Confidence 0 0 011234566689999999864 223444456778888
Q ss_pred HHHhCCCceeecccEEEeccCCCCCeEEEccCCcccccCcchhHHHhhhhccCCCeEEEEEeCCccccHHHHHHHHHHcC
Q 007251 341 ELSKQGLVEESQGARVIFIEGVNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAG 420 (611)
Q Consensus 341 ~L~~~G~~~e~dGa~~~~~~g~~~d~Vl~ksDG~~tY~t~DiA~~~~r~~~~~~d~iIyV~g~dq~~hf~~l~~~~~~lG 420 (611)
+|.++| ||.++|.. |...+.. ..+.+++ |+|.||..|-+++..+++++|
T Consensus 95 ~L~~~g-------------------------dg~ptY~~---a~~vDD~-~~~ithV--iRG~D~~~~t~~q~~l~~aLg 143 (239)
T cd00808 95 KLLEKG-------------------------DGFPTYHL---ANVVDDH-LMGITHV--IRGEEHLSSTPKQILLYEALG 143 (239)
T ss_pred HHHHcC-------------------------CCCccccc---HHHHhHH-hcCCCEE--EEChhhhhChHHHHHHHHHcC
Confidence 898877 89999985 4444554 4688888 599999999999999999999
Q ss_pred CCCCCCCCCCcEEEEeeeeEEcCCCceeeeccCCcccHHHHHHHHHH-HHH-HHHHHhcCCCCCCHHHHHHHHhhcCc-c
Q 007251 421 WLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKN-RSK-AVLIERGKDKEWTEEELEQTAEAVGY-G 497 (611)
Q Consensus 421 ~~~~~~~~~~~~~Hv~~g~V~~~dG~kmSkR~G~~v~l~dLldea~~-~a~-~~~~~r~~~~~~~~~e~~~~a~~vg~-~ 497 (611)
+. .+.+.|+ .++.+.+|.|||||.|+ .++..+.+++.. .|. ..+..-|-...-. .+. ..+ +
T Consensus 144 ~~------~p~~~h~--pll~~~~g~KLSKR~~~-~~l~~lr~~G~~p~ai~~~l~~lG~~~~~~-~~~------~~~~~ 207 (239)
T cd00808 144 WE------PPKFAHL--PLILNPDGKKLSKRKGD-TSISDYREEGYLPEALLNYLALLGWSPPDG-EEF------FTLEE 207 (239)
T ss_pred CC------CCceEee--ccccCCCCCcccCCCCC-ccHHHHHHCCCCHHHHHHHHHHcCCCCCCC-CCc------CCHHH
Confidence 95 3567888 55778899999999997 688888775433 222 2222212110000 000 111 1
Q ss_pred hhhhhhccCCCCCccccccccccccc
Q 007251 498 AAKYFDLKNNRLTNYTFSFDQMLNDK 523 (611)
Q Consensus 498 avRy~~L~~~~~~~~~Fd~d~~~~~~ 523 (611)
.+..|.+..-..++..||++++..+|
T Consensus 208 l~~~f~~~~~~~~~~~~d~~kL~~~n 233 (239)
T cd00808 208 LIELFDLERVSKSPAIFDPEKLDWLN 233 (239)
T ss_pred HHhcCCHhhCCcCcCcCCHHHHHHHH
Confidence 35567777766788888888876554
No 65
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=99.63 E-value=8.8e-14 Score=163.28 Aligned_cols=140 Identities=16% Similarity=0.215 Sum_probs=100.5
Q ss_pred HHHHcCCCCCCCCCCCcEEEEeeeeEEcCCCceeeeccCCcccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhc
Q 007251 415 AAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAV 494 (611)
Q Consensus 415 ~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~dG~kmSkR~G~~v~l~dLldea~~~a~~~~~~r~~~~~~~~~e~~~~a~~v 494 (611)
++..+|+.+...|+ ..+.|. ||| |||||+||+|++.|++++ +
T Consensus 547 ~l~~~~~~~~~~Pf-k~v~~~--G~v------KMSKS~GN~i~p~~~i~~-----------------------------y 588 (805)
T PRK00390 547 VLRDLGLVSSDEPF-KKLLTQ--GMV------KMSKSKGNVVDPDDIIEK-----------------------------Y 588 (805)
T ss_pred HHHHhhcccCCcch-hhheec--CcE------EeCCCCCCCCCHHHHHHH-----------------------------c
Confidence 34455543322233 345555 767 899999999999999998 7
Q ss_pred CcchhhhhhccC-CCCCcccccccccccccCChHHHHHHHHHHHHHHHHHhCCChhhhhhcCCCCCCCHHHHHHHHHHHH
Q 007251 495 GYGAAKYFDLKN-NRLTNYTFSFDQMLNDKGNTAVYLLYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLH 573 (611)
Q Consensus 495 g~~avRy~~L~~-~~~~~~~Fd~d~~~~~~gnt~~ylqYa~aRi~SIlrKa~~~~~~~~~~~~~~l~~~~e~~L~~~l~~ 573 (611)
|.|++||++++. ++.++++|+.+.+... +-.+.|+.+.++......... + ... .+.+++|+..+.+
T Consensus 589 gaD~lRl~l~~~~~~~~d~~~s~~~l~~~--------~~~l~kl~~~~~~~~~~~~~~---~-~~~-~~~D~~il~~l~~ 655 (805)
T PRK00390 589 GADTARLFEMFAGPPEKDLEWSDSGVEGA--------YRFLQRVWRLVVDAKGEAGAL---D-VAA-LSEDKELRRKLHK 655 (805)
T ss_pred ChHHHHHHHHhcCCccCCcccCHHHHHHH--------HHHHHHHHHHHHHhhhccccc---C-ccc-ChhhHHHHHHHHH
Confidence 999999999885 6789999998876432 112345555554411111000 1 111 2456889999999
Q ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHhchh
Q 007251 574 FSEVIEEALTNLLPNVVCEYLYNLSEYFTRFY 605 (611)
Q Consensus 574 fp~~v~~a~~~~~P~~l~~yL~~La~~fn~fY 605 (611)
+...+.+++++++.+.++..|+++...+++||
T Consensus 656 ~i~~v~~~~e~~~f~~ai~~l~~f~n~lsk~~ 687 (805)
T PRK00390 656 TIKKVTEDIERLRFNTAIAALMELVNALYKAE 687 (805)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988
No 66
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=99.63 E-value=3.2e-15 Score=161.99 Aligned_cols=138 Identities=17% Similarity=0.192 Sum_probs=97.3
Q ss_pred CCeEEEccCCcccccCcchhHHHhhhhccCCCeEEEEEeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEeeeeEEcC
Q 007251 364 IPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGE 443 (611)
Q Consensus 364 ~d~Vl~ksDG~~tY~t~DiA~~~~r~~~~~~d~iIyV~g~dq~~hf~~l~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~ 443 (611)
.|.||.|+||.|||.. |...+-. ..+.+|+| .|.||...-+....+.+++||.+ ++.+.|+ .++++.
T Consensus 165 ~D~Vi~R~Dg~PtY~f---A~vVDD~-~mgIThVi--RG~d~l~~tp~Qi~Ly~aLg~~~-----pp~f~Hl--pli~~~ 231 (433)
T PRK12410 165 DSFVILRADKTPTYNF---ACAVDDM-LYDISLII--RGEDHVSNTPKQILIREALGYNK-----EITYAHL--PIILNE 231 (433)
T ss_pred CCeEEEcCCCCccccc---cchhchh-hcCCCEEE--echhhhhCcHHHHHHHHHcCCCC-----CCeEEEe--eeeeCC
Confidence 4789999999999974 5444544 35778885 89999776666668889999952 2478999 458899
Q ss_pred CCceeeeccCCcccHHHHHHHHHH--HHHHHHHHhcCCCCCCHHHHHHHHhhcCc-chhhhhhccCCCCCcccccccccc
Q 007251 444 DGKRLRTRFSEVVRLVDLLDEAKN--RSKAVLIERGKDKEWTEEELEQTAEAVGY-GAAKYFDLKNNRLTNYTFSFDQML 520 (611)
Q Consensus 444 dG~kmSkR~G~~v~l~dLldea~~--~a~~~~~~r~~~~~~~~~e~~~~a~~vg~-~avRy~~L~~~~~~~~~Fd~d~~~ 520 (611)
+|+|||||.| ..++.++.+.+.. ...+.+..-|-.. ++|+ +.. +.+..|.+..-..++..||++++.
T Consensus 232 ~g~KLSKR~~-~~~v~~~r~~G~~PeAi~n~l~~lG~~~---~~e~------~~~~eli~~F~~~~i~~~~~~~d~~kL~ 301 (433)
T PRK12410 232 EGKKMSKRDN-ASSVKWLLEQGFLPSAIANYLILLGNKT---PKEI------FTLEEAIEWFDIEKISKSPAKFDLKKLR 301 (433)
T ss_pred CCCeeecccC-hhhHHHHHHCCCCHHHHHHHHHHhCCCC---cccc------cCHHHHHHhCCHhhCCCccccCCHHHHH
Confidence 9999999999 4578888876543 2233333222111 1111 221 356788888888899999999998
Q ss_pred cccC
Q 007251 521 NDKG 524 (611)
Q Consensus 521 ~~~g 524 (611)
.+|+
T Consensus 302 ~~N~ 305 (433)
T PRK12410 302 FINR 305 (433)
T ss_pred HHHH
Confidence 8774
No 67
>PLN02627 glutamyl-tRNA synthetase
Probab=99.62 E-value=4.1e-15 Score=163.88 Aligned_cols=136 Identities=15% Similarity=0.164 Sum_probs=97.4
Q ss_pred CCeEEEccCCcccccCcchhHHHhhhhccCCCeEEEEEeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEeeeeEEcC
Q 007251 364 IPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGE 443 (611)
Q Consensus 364 ~d~Vl~ksDG~~tY~t~DiA~~~~r~~~~~~d~iIyV~g~dq~~hf~~l~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~ 443 (611)
.|.||.|+||.|||.. |...+-. ..+.+|+| .|.||...-++...+.+++||. .+.+.|+ .+|+++
T Consensus 224 ~D~Vi~R~DG~PtY~f---A~vVDD~-~mgITHVi--RG~D~l~nTpkQi~ly~aLg~~------~P~f~Hl--pli~~~ 289 (535)
T PLN02627 224 GDFVLLRSNGQPVYNF---CVAVDDA-TMGITHVI--RAEEHLPNTLRQALIYKALGFP------MPRFAHV--SLILAP 289 (535)
T ss_pred CCeEEEecCCCccccc---cceeccc-ccCCcEEE--echhhhcChHHHHHHHHHcCCC------CCeEEEc--cceeCC
Confidence 4889999999999974 4444444 35778885 8999977666666889999995 3578999 458999
Q ss_pred CCceeeeccCCcccHHHHHHHHHH-H-HHHHHHHhcCCCCCCH---HHHHHHHhhcCc-chhhhhhccCCCCCccccccc
Q 007251 444 DGKRLRTRFSEVVRLVDLLDEAKN-R-SKAVLIERGKDKEWTE---EELEQTAEAVGY-GAAKYFDLKNNRLTNYTFSFD 517 (611)
Q Consensus 444 dG~kmSkR~G~~v~l~dLldea~~-~-a~~~~~~r~~~~~~~~---~e~~~~a~~vg~-~avRy~~L~~~~~~~~~Fd~d 517 (611)
+|+|||||.| .+++.++.+.+.. . ..+.+..- +|++ +|+ +.. +.+..|++..-..++..||.+
T Consensus 290 ~g~KLSKR~~-~~~v~~~r~~G~~PeAi~nyla~L----Gws~~~~~e~------~~~~eli~~F~l~~v~~s~~~fD~~ 358 (535)
T PLN02627 290 DRSKLSKRHG-ATSVGQFREMGYLPDAMVNYLALL----GWNDGTENEI------FTLEELVEKFSIDRINKSGAVFDST 358 (535)
T ss_pred CCCccccccC-CccHHHHHHCCCCHHHHHHHHHHh----CCCCCCCCCc------CCHHHHHHhCCHhhCCCcccccCHH
Confidence 9999999998 5588888876543 2 22333221 2221 111 121 246788898888899999999
Q ss_pred ccccccC
Q 007251 518 QMLNDKG 524 (611)
Q Consensus 518 ~~~~~~g 524 (611)
++..+|+
T Consensus 359 KL~wlN~ 365 (535)
T PLN02627 359 KLKWMNG 365 (535)
T ss_pred HHHHHHH
Confidence 9988874
No 68
>PLN02563 aminoacyl-tRNA ligase
Probab=99.58 E-value=2.9e-13 Score=160.23 Aligned_cols=119 Identities=14% Similarity=0.190 Sum_probs=82.0
Q ss_pred eeeeccCCcccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhcCcchhhhhhccCCC-CCcccccccccccccCC
Q 007251 447 RLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNR-LTNYTFSFDQMLNDKGN 525 (611)
Q Consensus 447 kmSkR~G~~v~l~dLldea~~~a~~~~~~r~~~~~~~~~e~~~~a~~vg~~avRy~~L~~~~-~~~~~Fd~d~~~~~~gn 525 (611)
|||||+||+|.+.+++++ +|+|++|||++...+ ..+..|+.+.+. |
T Consensus 723 KMSKSKGNvVdP~eiI~k-----------------------------YGADaLRl~ll~~ap~~dd~~w~~~~V~---g- 769 (963)
T PLN02563 723 KMSKSRGNVVNPDDVVSE-----------------------------YGADSLRLYEMFMGPLRDSKTWSTSGVE---G- 769 (963)
T ss_pred ccccccCCcCCHHHHHHH-----------------------------cCcHHHHHHHHhCCCcccccccCHHHHH---H-
Confidence 999999999999999998 799999999998765 456666644432 1
Q ss_pred hHHHHHHHHHHHHHHHHHhC-CChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhch
Q 007251 526 TAVYLLYAHARICSIIRKSG-KDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRF 604 (611)
Q Consensus 526 t~~ylqYa~aRi~SIlrKa~-~~~~~~~~~~~~~l~~~~e~~L~~~l~~fp~~v~~a~~~~~P~~l~~yL~~La~~fn~f 604 (611)
...++ .|+-.+..... .+. .... .........+.+++..+......+.+++++++.+.++..+++++...+++
T Consensus 770 ~~rfL----~rlwn~~~~~~~~~~-~~~~-~~~~~~~~~d~~ll~kl~~~ikkVte~~e~y~FntAi~~lmef~n~l~~~ 843 (963)
T PLN02563 770 VHRFL----GRTWRLVVGAPLPDG-SFRD-GTVVTDEEPSLEQLRLLHKCIAKVTEEIESTRFNTAISAMMEFTNAAYKW 843 (963)
T ss_pred HHHHH----HHHHHHHHHhhhccc-ccCc-cccccCCcchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhCc
Confidence 12244 34444433320 000 0000 00001113456788999999999999999999999999999999887764
No 69
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=99.58 E-value=2.8e-14 Score=162.78 Aligned_cols=133 Identities=21% Similarity=0.278 Sum_probs=92.0
Q ss_pred CCceEEEEecCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCccccchHHH
Q 007251 182 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 261 (611)
Q Consensus 182 ~~~kV~Ve~~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~ 261 (611)
+.++..|-..-||+||+||+||++|.++.|+++|..+..||+|....-.+-.|..+...+.. .++... +..
T Consensus 21 ~~~~f~i~~~PPy~nG~lH~GH~~~~~~~D~i~Ry~rm~G~~v~~~~G~D~~Glpie~~vek---~l~~~~---~~~--- 91 (601)
T PF00133_consen 21 NKPKFFIHDPPPYANGDLHIGHALNKTIKDIIARYKRMQGYNVLFPPGWDCHGLPIEAKVEK---KLGIKE---KKD--- 91 (601)
T ss_dssp TSGEEEEEE---BTSSS-BHHHHHHHHHHHHHHHHHHCTTSEEEEEEEEB--SHHHHHHHHH---HTTTTS---HHH---
T ss_pred CCCcEEEEeCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCcEeCCCCCcCCCCcchhhhHHH---hhcccc---ccc---
Confidence 36788888999999999999999999999999999999999999999999999887654321 111100 000
Q ss_pred HHHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeccc-----ccccCcHH
Q 007251 262 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-----SFYNPYIP 336 (611)
Q Consensus 262 l~~~y~~~~~~~~~d~~~~~~a~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~LgV~f~~~~E-----s~y~~~v~ 336 (611)
... -|.++.++..+++++...+.+++.+++||+.+||..+ ..|...+.
T Consensus 92 --------~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~y~~~v~ 144 (601)
T PF00133_consen 92 --------RKD-------------------LGREEFREECREWAEEFIEEQKEQFKRLGVSIDWDREYFTMDPEYEKFVW 144 (601)
T ss_dssp --------CSC-------------------STHHHHHHHHHHHHHHHHHHHHHHHHHTT--SECTCEEETTSHHHHHHHH
T ss_pred --------ccc-------------------cccccchhhhcchhhhhhhhhhhhhhheeeecccCCceEECCccHhHHHH
Confidence 000 1122333444556777888999999999999987533 34556789
Q ss_pred HHHHHHHhCCCcee
Q 007251 337 GVIDELSKQGLVEE 350 (611)
Q Consensus 337 ~vi~~L~~~G~~~e 350 (611)
.++.+|.++|++|.
T Consensus 145 ~~F~~l~~kglIyr 158 (601)
T PF00133_consen 145 WQFKKLYEKGLIYR 158 (601)
T ss_dssp HHHHHHHHTTSEEE
T ss_pred HHHHHHHhcCcEEe
Confidence 99999999999984
No 70
>PF05746 DALR_1: DALR anticodon binding domain; InterPro: IPR008909 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids [].; GO: 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1F7V_A 1F7U_A 1BS2_A 1IQ0_A.
Probab=99.58 E-value=2.5e-15 Score=135.64 Aligned_cols=82 Identities=35% Similarity=0.631 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHhCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhchhhccc
Q 007251 530 LLYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNCQ 609 (611)
Q Consensus 530 lqYa~aRi~SIlrKa~~~~~~~~~~~~~~l~~~~e~~L~~~l~~fp~~v~~a~~~~~P~~l~~yL~~La~~fn~fY~~~~ 609 (611)
|||||+|++||+||++.............+.+++|++|++.+.+||+++.+++++++||.+|+||++||..||+||++|+
T Consensus 1 v~Ya~aRi~sIl~k~~~~~~~~~~~~~~~~~~~~e~~L~~~l~~~~~~l~~a~~~~~p~~l~~yL~~La~~f~~fy~~~~ 80 (119)
T PF05746_consen 1 VQYAYARISSILRKAEESGINDEYDDDFLLEEEEERELLKQLARFPDVLEKAAKDLEPHKLCDYLYELAQAFNSFYDNVR 80 (119)
T ss_dssp HHHHHHHHHHHHHHCTCTTCCCCHCCHHHS-SHHHHHHHHHHCTHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHS-
T ss_pred ChHHHHHHHHHHHcCCCcCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 79999999999999975321100001111468899999999999999999999999999999999999999999999999
Q ss_pred CC
Q 007251 610 VQ 611 (611)
Q Consensus 610 Vl 611 (611)
|+
T Consensus 81 I~ 82 (119)
T PF05746_consen 81 IL 82 (119)
T ss_dssp ST
T ss_pred cc
Confidence 86
No 71
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=99.57 E-value=1.8e-14 Score=144.17 Aligned_cols=215 Identities=19% Similarity=0.152 Sum_probs=143.7
Q ss_pred cCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCccccchHHHHHHHHHHHh
Q 007251 191 SSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSK 270 (611)
Q Consensus 191 ~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~~ 270 (611)
-.|+|||+||+||+|++++....||-. .|-=+.| |.|...
T Consensus 6 FAPsPtG~lHlG~~r~al~n~l~Ar~~--~G~~iLR---ieDtD~----------------------------------- 45 (230)
T cd00418 6 FAPSPTGYLHIGHARTALFNFAFARKY--GGKFILR---IEDTDP----------------------------------- 45 (230)
T ss_pred eCCCCCCcccHHHHHHHHHHHHHHHHc--CCeEEEE---eCcCCC-----------------------------------
Confidence 369999999999999999999998864 3443333 233211
Q ss_pred cccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHhcCCeeee--cccccccCcHHHHHHHHHhCCCc
Q 007251 271 NRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEE--KGESFYNPYIPGVIDELSKQGLV 348 (611)
Q Consensus 271 ~~~~~d~~~~~~a~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~LgV~f~~--~~Es~y~~~v~~vi~~L~~~G~~ 348 (611)
. +....+.+.+.++++.||+..|. +..|.+.+...+.+++|.++|
T Consensus 46 -------~------------------------R~~~~~~~~I~~dL~wlGl~wd~~~~~QS~r~~~y~~~~~~L~~~g-- 92 (230)
T cd00418 46 -------E------------------------RSRPEYVESILEDLKWLGLDWDEGPYRQSDRFDLYRAYAEELIKKG-- 92 (230)
T ss_pred -------C------------------------CCChHHHHHHHHHHHHcCCCCCCCeeehhcCHHHHHHHHHHHHHcC--
Confidence 0 00112234667799999999863 334555566788999999988
Q ss_pred eeecccEEEeccCCCCCeEEEccCCcccccCcchhHHHhhhhccCCCeEEEEEeCCccccHHHHHHHHHHcCCCCCCCCC
Q 007251 349 EESQGARVIFIEGVNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDST 428 (611)
Q Consensus 349 ~e~dGa~~~~~~g~~~d~Vl~ksDG~~tY~t~DiA~~~~r~~~~~~d~iIyV~g~dq~~hf~~l~~~~~~lG~~~~~~~~ 428 (611)
|.|+|. +|...+-. ..+.+++| .|.||...-++...+++++|+.
T Consensus 93 ------------------------g~p~Y~---la~vvDD~-~~gIThVi--RG~D~l~st~~q~~l~~~Lg~~------ 136 (230)
T cd00418 93 ------------------------GYPLYN---FVHPVDDA-LMGITHVL--RGEDHLDNTPIQDWLYEALGWE------ 136 (230)
T ss_pred ------------------------CCcccc---cccccccc-ccCCCEEE--ECHhhhhchHHHHHHHHHcCCC------
Confidence 888886 45555544 46788885 8999988777777889999994
Q ss_pred CCcEEEEeeeeEEcCCCceeeeccCCcccHHHHHHHHHH-HHH-HHHHHhcCCCCCCHHHHHHHHhhcCcchhhhhhccC
Q 007251 429 YPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKN-RSK-AVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKN 506 (611)
Q Consensus 429 ~~~~~Hv~~g~V~~~dG~kmSkR~G~~v~l~dLldea~~-~a~-~~~~~r~~~~~~~~~e~~~~a~~vg~~avRy~~L~~ 506 (611)
.+.+.|+ .++++.+|+|||||.|+ .++.++.+++.. .|+ ..+..-|-... ++.+...+. +++..|.+..
T Consensus 137 ~P~~~H~--pll~~~~g~KLSKr~~~-~~i~~~r~~G~~p~ai~~~l~~lG~~~~-~~~~~~~~~-----~li~~f~~~~ 207 (230)
T cd00418 137 PPRFYHF--PRLLLEDGTKLSKRKLN-TTLRALRRRGYLPEALRNYLALIGWSKP-DGHELFTLE-----EMIAAFSVER 207 (230)
T ss_pred CCeEEEe--eeeeCCCCCCccCcCCC-cCHHHHHHCCCcHHHHHHHHHHcCCCCC-CCccccCHH-----HHHHhcCHhh
Confidence 3678888 55888999999999996 688888775332 222 22221121110 001111111 2466777777
Q ss_pred CCCCccccccccccccc
Q 007251 507 NRLTNYTFSFDQMLNDK 523 (611)
Q Consensus 507 ~~~~~~~Fd~d~~~~~~ 523 (611)
-..++..||++++..+|
T Consensus 208 ~~~~~~~~d~~kL~~~N 224 (230)
T cd00418 208 VNSADATFDWAKLEWLN 224 (230)
T ss_pred CCCCCcccCHHHHHHHH
Confidence 77788899999876654
No 72
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=4.4e-13 Score=154.16 Aligned_cols=114 Identities=23% Similarity=0.276 Sum_probs=86.2
Q ss_pred ceEEEEecCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCccccchHHHHH
Q 007251 184 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQ 263 (611)
Q Consensus 184 ~kV~Ve~~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~ 263 (611)
+|.-|=.-=|-|+|.|||||+|+..+||++||+.|..||+|..=.-..=+ |-|+...+
T Consensus 34 ~Kfyvl~mfPYpSG~LHvGH~r~Yti~Dv~aRykRm~GyNVL~PMGwdaf----------------------GlPae~~A 91 (814)
T COG0495 34 EKFYVLVMFPYPSGALHVGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAF----------------------GLPAENAA 91 (814)
T ss_pred CceEEEeCCCCCCCCcccCccccccHHHHHHHHHHhcCCeecccCccccc----------------------CchHHHHH
Confidence 47777788899999999999999999999999999999999985533333 33443221
Q ss_pred HHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeccc-----ccccCcHHHH
Q 007251 264 EFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-----SFYNPYIPGV 338 (611)
Q Consensus 264 ~~y~~~~~~~~~d~~~~~~a~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~LgV~f~~~~E-----s~y~~~v~~v 338 (611)
. +... +| +.+.+...+.+++.+++||..+||..| ..|...++..
T Consensus 92 ~-------~~~~------------------~P------~~wt~~ni~~~k~qlk~lG~siDW~Ref~T~Dp~Yyk~~QW~ 140 (814)
T COG0495 92 I-------KIGT------------------DP------AKWTYYNIAYMKKQLKSLGFSIDWRREFATCDPEYYKWIQWQ 140 (814)
T ss_pred H-------HhCC------------------Ch------HHHHHHHHHHHHHHHHHhCCccccccceecCCccHHHHHHHH
Confidence 0 0111 23 233556677888999999999998654 3577789999
Q ss_pred HHHHHhCCCcee
Q 007251 339 IDELSKQGLVEE 350 (611)
Q Consensus 339 i~~L~~~G~~~e 350 (611)
+-+|.++|++|.
T Consensus 141 F~kL~ekGL~y~ 152 (814)
T COG0495 141 FLKLYEKGLAYR 152 (814)
T ss_pred HHHHHHCCCEEe
Confidence 999999999984
No 73
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=99.54 E-value=3.4e-14 Score=158.31 Aligned_cols=229 Identities=17% Similarity=0.095 Sum_probs=150.2
Q ss_pred CceEEEEecCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCccccchHHHH
Q 007251 183 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 262 (611)
Q Consensus 183 ~~kV~Ve~~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l 262 (611)
+++|+. .+.|+|||+|||||+|++++-+.+|| +|+....--+.|....+.
T Consensus 99 ~g~V~t-RFaPsPtG~LHIGharaalln~~~Ar-----~~~G~~iLRidDTDpk~~------------------------ 148 (567)
T PRK04156 99 KGKVVM-RFAPNPSGPLHLGHARAAILNDEYAK-----MYGGKFILRFEDTDPRTK------------------------ 148 (567)
T ss_pred CCeEEE-EeCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEeEccCCCCcc------------------------
Confidence 456766 58999999999999999999999999 455555554555422100
Q ss_pred HHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHhcCCeeee-cccccccCcHHHHHHH
Q 007251 263 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEE-KGESFYNPYIPGVIDE 341 (611)
Q Consensus 263 ~~~y~~~~~~~~~d~~~~~~a~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~LgV~f~~-~~Es~y~~~v~~vi~~ 341 (611)
+ . ...+.+.|.++++.||+..|. ..-|.|.+...+++++
T Consensus 149 ---------R--~-----------------------------~~e~~~~I~edL~wLGl~wD~~~~qSdr~~~y~~~a~~ 188 (567)
T PRK04156 149 ---------R--P-----------------------------DPEAYDMILEDLKWLGVKWDEVVIQSDRLEIYYEYARK 188 (567)
T ss_pred ---------c--c-----------------------------hHHHHHHHHHHHHHcCCCCCCccCcccCHHHHHHHHHH
Confidence 0 0 011224567789999997742 2346666677888899
Q ss_pred HHhCCCceee----------------------------------------cccEEEeccCC-------CCCeEEEccCCc
Q 007251 342 LSKQGLVEES----------------------------------------QGARVIFIEGV-------NIPLIIVKSDGG 374 (611)
Q Consensus 342 L~~~G~~~e~----------------------------------------dGa~~~~~~g~-------~~d~Vl~ksDG~ 374 (611)
|.++|++|.. +|..++++..+ -.|.|+.|.++.
T Consensus 189 Li~~G~AY~C~cs~ee~~~~r~~g~~~~~R~~~~ee~l~~~e~m~~G~~~~g~~vlR~k~d~~~~n~~~rD~v~~R~~~~ 268 (567)
T PRK04156 189 LIEMGGAYVCTCDPEEFKELRDAGKPCPHRDKSPEENLELWEKMLDGEYKEGEAVVRVKTDLEHPNPSVRDWVAFRIVKT 268 (567)
T ss_pred HHHcCCCccCCCCHHHHHHHHhcCCCCCCcCCCHHHHHHHHHHhhcCccccCCeEEEEECcccCCCCCccccEEEEEcCC
Confidence 9999988841 11223333211 135667666332
Q ss_pred ---------ccccCcchhHHHhhhhccCCCeEEEEEeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEeeeeEEcCCC
Q 007251 375 ---------FNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDG 445 (611)
Q Consensus 375 ---------~tY~t~DiA~~~~r~~~~~~d~iIyV~g~dq~~hf~~l~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~dG 445 (611)
..|.+=|+|...+-. ..|.+++| .|.||..+-++...+.++|||. .+.+.|+ ++++ .+|
T Consensus 269 ~h~~~Gd~~~i~PtY~fA~~VDD~-l~GITHVi--Rg~d~~~~t~~Q~~l~~~Lg~~------~P~~~H~--~~L~-~~g 336 (567)
T PRK04156 269 PHPRVGDKYRVWPTYNFAVAVDDH-LLGVTHVL--RGKDHIDNTEKQRYIYDYFGWE------YPETIHY--GRLK-IEG 336 (567)
T ss_pred CccccCCCeEEEEEeccCceeeec-CCCCCeEE--cccccccChHHHHHHHHHcCCC------CceEEEc--ceec-CCC
Confidence 123333555444433 35777875 8999988777777888999984 3678888 5566 578
Q ss_pred ceeeecc-------C--------CcccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhcCcchhhhhhccCCC-C
Q 007251 446 KRLRTRF-------S--------EVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNR-L 509 (611)
Q Consensus 446 ~kmSkR~-------G--------~~v~l~dLldea~~~a~~~~~~r~~~~~~~~~e~~~~a~~vg~~avRy~~L~~~~-~ 509 (611)
.|||||+ | +..++..|...+ +-+.|+|.|++.... .
T Consensus 337 ~kLSKR~~~~~i~~g~~~gWDDpr~~Tl~~lrrrG----------------------------~~PeAi~~fl~~lG~s~ 388 (567)
T PRK04156 337 FVLSTSKIRKGIEEGEYSGWDDPRLPTLRALRRRG----------------------------ILPEAIRELIIEVGVKE 388 (567)
T ss_pred ceeecccchhccccCccccccCCchHHHHHHHHcC----------------------------CCHHHHHHHHHHhCCCC
Confidence 8999998 3 223455444442 467889999987765 4
Q ss_pred Cccccccccccc
Q 007251 510 TNYTFSFDQMLN 521 (611)
Q Consensus 510 ~~~~Fd~d~~~~ 521 (611)
++..|+|+.+.+
T Consensus 389 ~~~~~~~~~L~~ 400 (567)
T PRK04156 389 TDATISWENLYA 400 (567)
T ss_pred CCcccCHHHHHH
Confidence 889999998643
No 74
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=99.54 E-value=1.7e-14 Score=151.77 Aligned_cols=258 Identities=16% Similarity=0.210 Sum_probs=127.6
Q ss_pred CceEEEEecCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCC--CccccchHH
Q 007251 183 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNS--EDANETAIG 260 (611)
Q Consensus 183 ~~kV~Ve~~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~G~Q~~~l~~~~~~~~~~~--~~~~~~~i~ 260 (611)
.+.++| -++..|.|+.|||++|..+.++.++|.|+..|++|..++..+|... +.++ ....|+. +.+-+.++.
T Consensus 22 ~~~~v~-~sG~sPSG~~HIGn~rEv~~~~~V~~al~~~g~~~r~i~~~DD~D~-lRKv----P~~~p~~~~~~ylg~Plt 95 (360)
T PF01921_consen 22 KEPYVF-ASGISPSGLPHIGNFREVLRADMVARALRDRGKDVRLIYFSDDMDP-LRKV----PPNVPNPELEKYLGKPLT 95 (360)
T ss_dssp -SEEEE-EEEE--SS---HHHHHHHHHHHHHHHHHHTTT-EEEEEEEE-TTSB----------TTS-CC-CCCCTTSBTT
T ss_pred CccEEE-ecCCCCCCCcccccccchhhHHHHHHHHHHcCCCEEEEEEeecCCc-ccCC----CCCCChHHHHHhcCCccc
Confidence 345655 7999999999999999999999999999999999999999999876 2221 1222332 112223332
Q ss_pred HHHHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHhcCCeeeecc-ccccc-CcHHHH
Q 007251 261 ELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKG-ESFYN-PYIPGV 338 (611)
Q Consensus 261 ~l~~~y~~~~~~~~~d~~~~~~a~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~LgV~f~~~~-Es~y~-~~v~~v 338 (611)
++ .||. |. ...+.+.+...|.+.|+.|||++++.+ ...|. +...+.
T Consensus 96 ~V------------PdP~--------------G~------~~SyaeH~~~~~~~~L~~~gie~e~~s~te~Y~sG~y~~~ 143 (360)
T PF01921_consen 96 RV------------PDPF--------------GC------HESYAEHFNAPFEEFLDEFGIEYEFISQTEMYRSGRYDEQ 143 (360)
T ss_dssp TS------------B-TT--------------SS------SSCHHHHHHHHHHHHHHTTT---EEEECCCCCCTTTTHHH
T ss_pred cC------------CCCC--------------CC------CccHHHHHHHHHHHHHHHcCCceEEEeHHHhhhCCchHHH
Confidence 11 1221 00 113467788899999999999985433 34453 332221
Q ss_pred H-HHHHhCCCce----------eecccEEEe--cc--CC-CCCeEEEcc--CCcccccCcchhH------------HHhh
Q 007251 339 I-DELSKQGLVE----------ESQGARVIF--IE--GV-NIPLIIVKS--DGGFNYASTDLAA------------LWYR 388 (611)
Q Consensus 339 i-~~L~~~G~~~----------e~dGa~~~~--~~--g~-~~d~Vl~ks--DG~~tY~t~DiA~------------~~~r 388 (611)
+ ..|+++.-+. ..++...|. ++ |. +...|+--. .++.+|.++.+++ .-||
T Consensus 144 i~~aL~~~~~I~~Il~~~~~~~~~~~y~Pf~piC~~cGri~tt~v~~~d~~~~~v~Y~c~~cG~~g~~~i~~g~gKL~Wk 223 (360)
T PF01921_consen 144 IRTALENRDEIREILNEYRGRERPETYSPFLPICEKCGRIDTTEVTEYDPEGGTVTYRCEECGHEGEVDITGGNGKLQWK 223 (360)
T ss_dssp HCHHHHTHHHHHHHHHHHHHHT--TT--SEEEEETTTEE--EEEEEEE--SSSEEEEE--TTS---EEETTTT-EEE-HH
T ss_pred HHHHHHhHHHHHHHHHHhcCcCCCCCeeeeeeeccccCCcccceeeEeecCCCEEEEEecCCCCEEEEecCCCcccccCC
Confidence 1 1222221111 123333221 22 22 111222212 4566676643332 2344
Q ss_pred h------hccCCCeEEEEEeCCccc---cHHHHHHHH-HHcCCCCCCCCCCCcEEEEeeeeEEcCCCceeeeccCCcccH
Q 007251 389 L------NEEKAEWIIYVTDVGQQL---HFDMVFSAA-KRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRL 458 (611)
Q Consensus 389 ~------~~~~~d~iIyV~g~dq~~---hf~~l~~~~-~~lG~~~~~~~~~~~~~Hv~~g~V~~~dG~kmSkR~G~~v~l 458 (611)
+ ...+.| +=--|.||.. -+..-..++ +.+|+.| + .++.|+|++...|.|||||+||++++
T Consensus 224 vDW~mRW~~lgVd--fEp~GKDH~~~GGS~d~~~~I~~~i~g~~p------P--~~~~YE~~~~~g~~kmSsSkG~~~t~ 293 (360)
T PF01921_consen 224 VDWPMRWAALGVD--FEPFGKDHASPGGSYDTSKRIAREILGYEP------P--VPFPYEFFLDKGGGKMSSSKGNGITP 293 (360)
T ss_dssp HHHHHHHHHTT-S--EEEEEHHHHCTTSHHHHHHHHHHHCC-------------EEEEE--EEES--------------H
T ss_pred CcChhhhhhcCce--eccCCCccCCCCCChhhHHHHHHHHhCCCC------C--CCCCeeEEEeCCCcccccCCCCccCH
Confidence 3 123433 2236888876 777777888 7889864 1 78899999988777999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhcCcchhhhhhccCCCCCccccccc
Q 007251 459 VDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFD 517 (611)
Q Consensus 459 ~dLldea~~~a~~~~~~r~~~~~~~~~e~~~~a~~vg~~avRy~~L~~~~~~~~~Fd~d 517 (611)
+|+|+- ..+..+||++++.+|.+..+|+++
T Consensus 294 ~e~L~~-----------------------------~~PE~lr~l~~~~~P~~~~~~~~~ 323 (360)
T PF01921_consen 294 EEWLEY-----------------------------APPESLRYLMARTKPNKAKDFSFD 323 (360)
T ss_dssp HHHHTT-----------------------------S-HHHHHHHHHCS-TTS-EEE--S
T ss_pred HHHHHh-----------------------------cCHHHHHHHHcccCCCcceEeccC
Confidence 999997 367889999999999999999988
No 75
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=99.53 E-value=1e-13 Score=145.94 Aligned_cols=238 Identities=20% Similarity=0.218 Sum_probs=148.0
Q ss_pred cCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCccccchHHHHHHHHHHHh
Q 007251 191 SSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSK 270 (611)
Q Consensus 191 ~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~~ 270 (611)
-.|+|||+|||||+|++++-..+|| +..|-=+.|. .|... .
T Consensus 6 FAPsPtG~lHiG~~r~al~n~~~Ar--~~~G~~iLRi---eDtD~--------------~-------------------- 46 (314)
T PF00749_consen 6 FAPSPTGYLHIGHARTALLNYLFAR--KYGGKFILRI---EDTDP--------------E-------------------- 46 (314)
T ss_dssp E---SSSS-BHHHHHHHHHHHHHHH--HTTSEEEEEE---ETSST--------------T--------------------
T ss_pred eCCCCCCCcccchhHHHHHHHHHHh--ccCceEEEec---ccccc--------------c--------------------
Confidence 4799999999999999999999998 4556655552 23211 0
Q ss_pred cccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHhcCCeeee--cccccccCcHHHHHHHHHhCCCc
Q 007251 271 NRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEE--KGESFYNPYIPGVIDELSKQGLV 348 (611)
Q Consensus 271 ~~~~~d~~~~~~a~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~LgV~f~~--~~Es~y~~~v~~vi~~L~~~G~~ 348 (611)
+....+.+.+.++|+.||+..|. +..|.+.+...+++++|.++|.+
T Consensus 47 --------------------------------R~~~~~~~~i~~~L~wlGl~~D~~~~~QS~r~~~Y~~~~~~L~~~g~a 94 (314)
T PF00749_consen 47 --------------------------------RCRPEFYDAILEDLRWLGLEWDYGPYYQSDRLEIYQEAAEKLIDKGKA 94 (314)
T ss_dssp --------------------------------TCHHHHHHHHHHHHHHHT---STCEEEGGGGHHHHHHHHHHHHHTTSE
T ss_pred --------------------------------cchhhHHHHHHhheeEEEEecCCeEEeHHHHHHHHHHHHHHHhhcCCC
Confidence 00112234566688888888752 22455555667888888888888
Q ss_pred ee----------------e---------------------------cccEEEecc--------------C-------CCC
Q 007251 349 EE----------------S---------------------------QGARVIFIE--------------G-------VNI 364 (611)
Q Consensus 349 ~e----------------~---------------------------dGa~~~~~~--------------g-------~~~ 364 (611)
|. . ++..++++. | ...
T Consensus 95 Y~C~Csr~~l~~~r~~~~~~~~~~~~~y~~~c~~~~~~~~~~~~~~~~~~~iRlk~~~~~~~~~~D~v~g~i~~~~~~~~ 174 (314)
T PF00749_consen 95 YPCFCSREELKAAREAQEGAGCPHRPRYPGTCRELTEEEMRAGLAKGGPAVIRLKVPMESPIAFRDLVRGRIIFDPSDLG 174 (314)
T ss_dssp EEEESEHHHHHHHHHHHHHTTSTTTTSBHHHHHCHHHHHHHHHHHTTTSEEEEE-SSSTCCEEEEETTTEEEEEEGGGSB
T ss_pred ccccCCHHHHHHHHHHhhccCCCccccchhhhhhhhHHHHHhhhccCCceeeeeecccccccccccCcceeeeeccccCC
Confidence 73 0 111222221 0 115
Q ss_pred CeEEEccCCcccccCcchhHHHhhhhccCCCeEEEEEeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEeeeeEEcCC
Q 007251 365 PLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGED 444 (611)
Q Consensus 365 d~Vl~ksDG~~tY~t~DiA~~~~r~~~~~~d~iIyV~g~dq~~hf~~l~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~d 444 (611)
|+|+.|+||.|+|. +|...+-. ..+.+++| .|.|+...-++...+.++||+. .+.+.|++ ++++.+
T Consensus 175 D~vi~r~dg~ptY~---fA~vVDD~-~~gITHVi--RG~D~l~~t~~Q~~L~~~Lg~~------~P~~~H~p--l~l~~~ 240 (314)
T PF00749_consen 175 DFVIRRSDGYPTYH---FAVVVDDH-LMGITHVI--RGEDLLSSTPRQILLYEALGWP------PPPYAHLP--LILNED 240 (314)
T ss_dssp TEEEESTTSEB-HH---HHHHHHHH-HTT-SEEE--EEGGGTTCHHHHHHHHHHCTSS------S-EEEEEE--EEEETT
T ss_pred chhccccccCcccc---cceeeccc-ccccCeEE--EccccccccHHHHHHHHHhCCC------CcceEeee--eeecCC
Confidence 89999999999997 67777765 46788885 9999987766666889999995 26788984 477899
Q ss_pred CceeeeccCCcc-cHHHHHHHHHH--HHHHHHHHhcCCCCCCHHHHHHHHhhcCcchhhhhhccCCCCCccccccccc
Q 007251 445 GKRLRTRFSEVV-RLVDLLDEAKN--RSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQM 519 (611)
Q Consensus 445 G~kmSkR~G~~v-~l~dLldea~~--~a~~~~~~r~~~~~~~~~e~~~~a~~vg~~avRy~~L~~~~~~~~~Fd~d~~ 519 (611)
|+|+|||+|... .+.++.+.... ..++.+..+| |+++...++.. -.+.++.|+++....+...||.+++
T Consensus 241 g~kLSKR~~~~~i~~~~~r~~g~~~~~~l~~L~~lG----~~~~~~~e~~~--~~~~~~~f~~~~~~~~~~~fd~~kL 312 (314)
T PF00749_consen 241 GKKLSKRKGAKSIELGDYREWGDPPEATLNYLARLG----WSPEAIREFFS--LDELIKQFDLSKISKSPAVFDRKKL 312 (314)
T ss_dssp SSBSSTTCSHHBHHHHHHHHTT-THHHHHHHHHHTT----B-HCTHHCHHH--HHHHHHHC-GGGBHSSHEEHHHHHH
T ss_pred CcEechhhccccccccccccCCCCHHHHHHHHHHhc----CCcchhhhhcC--HHHHHHHhhHhhccCchHHhCHHHh
Confidence 999999999553 36777766544 2445555443 44322222221 1345677778887788888887764
No 76
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=99.52 E-value=4.9e-14 Score=141.70 Aligned_cols=167 Identities=16% Similarity=0.046 Sum_probs=116.5
Q ss_pred ecCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCccccchHHHHHHHHHHH
Q 007251 190 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRS 269 (611)
Q Consensus 190 ~~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~ 269 (611)
=+.|+|||+||+||+|++++.+.+|| +|++...--|.|..... +
T Consensus 5 RfaPsPtG~lHiG~~rtal~~~l~Ar-----~~~G~~ilRieDtD~~r---------------------~---------- 48 (240)
T cd09287 5 RFAPNPNGPLHLGHARAAILNGEYAK-----MYGGKFILRFDDTDPRT---------------------K---------- 48 (240)
T ss_pred eCCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEeeCcCCCCc---------------------c----------
Confidence 47899999999999999999999999 67777777677753210 0
Q ss_pred hcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHhcCCeeee-cccccccCcHHHHHHHHHhCCCc
Q 007251 270 KNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEE-KGESFYNPYIPGVIDELSKQGLV 348 (611)
Q Consensus 270 ~~~~~~d~~~~~~a~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~LgV~f~~-~~Es~y~~~v~~vi~~L~~~G~~ 348 (611)
. ..+.+.+.|.++++.||+..|. ...|.+.+...+++++|.++|.+
T Consensus 49 ----~-----------------------------~~~~~~~~i~~dL~wLGl~~d~~~~qS~r~~~y~~~~~~Li~~G~a 95 (240)
T cd09287 49 ----R-----------------------------PDPEAYDMIPEDLEWLGVKWDEVVIASDRIELYYEYARKLIEMGGA 95 (240)
T ss_pred ----c-----------------------------chHHHHHHHHHHHHHcCCCCCCccchhccHHHHHHHHHHHHHcCCc
Confidence 0 0112223477799999997752 22455556788899999999999
Q ss_pred eeecccEEEeccCCCCCeEEEccCCcccccCcchhHHHhhhhccCCCeEEEEEeCCccccHHHHHHHHHHcCCCCCCCCC
Q 007251 349 EESQGARVIFIEGVNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDST 428 (611)
Q Consensus 349 ~e~dGa~~~~~~g~~~d~Vl~ksDG~~tY~t~DiA~~~~r~~~~~~d~iIyV~g~dq~~hf~~l~~~~~~lG~~~~~~~~ 428 (611)
|... -.| .+.++ .|+|. +|...+-. ..+.+++| .|.|+...-++...+.+++|+.
T Consensus 96 Y~~~------~~~--~~~~i-----~ptY~---la~vVDD~-~~gIThVi--Rg~d~~~~t~~q~~l~~~Lg~~------ 150 (240)
T cd09287 96 YVHP------RTG--SKYRV-----WPTLN---FAVAVDDH-LLGVTHVL--RGKDHIDNTEKQRYIYEYFGWE------ 150 (240)
T ss_pred ccCc------ccC--CcEEE-----EEccc---cceeeecc-ccCCCeEE--echhhhhCCHHHHHHHHHcCCC------
Confidence 9610 011 23333 26664 45444444 35777775 8999988777766888999984
Q ss_pred CCcEEEEeeeeEEcCCCceeeeccC
Q 007251 429 YPKASHVGFGLVLGEDGKRLRTRFS 453 (611)
Q Consensus 429 ~~~~~Hv~~g~V~~~dG~kmSkR~G 453 (611)
.+.+.|++. +++ +|+|||||++
T Consensus 151 ~P~~~H~pl--l~~-~~~kLSKR~~ 172 (240)
T cd09287 151 YPETIHWGR--LKI-EGGKLSTSKI 172 (240)
T ss_pred CCcEEeeee--ecC-CCCeeccccc
Confidence 357789854 664 5799999995
No 77
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=99.48 E-value=2.1e-13 Score=147.33 Aligned_cols=263 Identities=18% Similarity=0.243 Sum_probs=164.7
Q ss_pred ceEEEEecCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCccccchHHHHH
Q 007251 184 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQ 263 (611)
Q Consensus 184 ~kV~Ve~~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~ 263 (611)
..++| =++..|.|..|||++|-.+.||+++|.|+..|++|..++..+|+.. + ++..++.+ +. +..
T Consensus 19 ~~~~v-~tGisPSG~~HIGn~rEv~t~d~V~ralr~~g~~~r~I~~~DD~D~-l-------Rkvp~~lp---~~---~~~ 83 (521)
T COG1384 19 DEYVV-ATGISPSGLIHIGNFREVLTADAVRRALRDRGDEVRLIYISDDYDP-L-------RKVPRNLP---DP---EEL 83 (521)
T ss_pred CcEEE-ecCcCCCCCcccccHHHHHHHHHHHHHHHHcCCceEEEEEccCCcc-c-------ccCCCCCC---Ch---HHH
Confidence 46777 5899999999999999999999999999999999999999999975 1 11111111 00 000
Q ss_pred HHHHHHhcccC--CChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHhcCCeeeecc-cccc-cCcHHHHH
Q 007251 264 EFYRRSKNRFD--SDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKG-ESFY-NPYIPGVI 339 (611)
Q Consensus 264 ~~y~~~~~~~~--~d~~~~~~a~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~LgV~f~~~~-Es~y-~~~v~~vi 339 (611)
+-|.. .-+. .||. | ....+.++..+.|.+.++.|||..++.+ ...| ++...+++
T Consensus 84 e~Ylg--~Plt~IPdP~--------------G------~~~Sya~hf~~~f~~~l~~~Gi~~E~~s~se~Yk~G~~~~~i 141 (521)
T COG1384 84 EQYLG--MPLTEIPDPF--------------G------CCDSYAEHFLRPFEEFLDEFGIEVEFVSATELYKSGLYDEAI 141 (521)
T ss_pred HHHcC--CccccCCCCc--------------c------ccchHHHHHHHHHHHHHHhcCCceEEEEhHHhhhcccHHHHH
Confidence 11110 0001 1221 1 1124567888899999999999986543 2344 33222222
Q ss_pred HHHHh-CCCc----------eeecccEEEe--cc--CC-CCCeEE-EccCCcccccCcc-------hh----HHHhhhhc
Q 007251 340 DELSK-QGLV----------EESQGARVIF--IE--GV-NIPLII-VKSDGGFNYASTD-------LA----ALWYRLNE 391 (611)
Q Consensus 340 ~~L~~-~G~~----------~e~dGa~~~~--~~--g~-~~d~Vl-~ksDG~~tY~t~D-------iA----~~~~r~~~ 391 (611)
....+ +.-+ ...++++-|. ++ |. ....|+ +..+|+.+|.+.+ |- -.-||+ +
T Consensus 142 ~~ale~rdeI~~il~~~~~~~~~e~~~P~~piC~kcGri~~t~v~~~d~~~~v~Y~Ce~Gh~g~v~ir~g~~KL~WRv-d 220 (521)
T COG1384 142 RIALERRDEIMEILNEYRGRELEEDWSPFMPICEKCGRILTTPVIEWDGEGTVEYRCECGHEGEVDIRGGEGKLPWRV-D 220 (521)
T ss_pred HHHHhhHHHHHHHHHHhcCCcccCCceeccccccccCCcceeEEEEecCCceEEEEecCCccceeeccccCcccccCc-C
Confidence 21111 1100 1123333331 22 43 222222 3334577777653 31 234565 4
Q ss_pred cCCCeEEE-E----EeCCcc---ccHHHHHHHHH-HcCCCCCCCCCCCcEEEEeeeeEEcCCCceeeeccCCcccHHHHH
Q 007251 392 EKAEWIIY-V----TDVGQQ---LHFDMVFSAAK-RAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLL 462 (611)
Q Consensus 392 ~~~d~iIy-V----~g~dq~---~hf~~l~~~~~-~lG~~~~~~~~~~~~~Hv~~g~V~~~dG~kmSkR~G~~v~l~dLl 462 (611)
|++-|.+- | .|.||. +-+.....|++ .+|+.| | .++.|.|+++..|.|||||+|++|+++|+|
T Consensus 221 Wp~RW~~lgVd~EPfGKDH~a~ggSydtg~~I~~ei~g~~p---P-----~~~~YE~i~lkg~~~mSsSkG~~i~~~dwl 292 (521)
T COG1384 221 WPMRWAALGVDFEPFGKDHAAAGGSYDTGKRIAREIFGYEP---P-----VPFVYEWILLKGGGKMSSSKGNVISLSDWL 292 (521)
T ss_pred ccchhhccCcccccCCcccccccCchHHHHHHHHHhcCCCC---C-----CCCceEEEEecCCcccccCCCcEEcHHHHH
Confidence 55544331 1 366664 35667778886 789854 1 466789998877789999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhcCcchhhhhhccCCCCCcccccccc-ccc
Q 007251 463 DEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQ-MLN 521 (611)
Q Consensus 463 dea~~~a~~~~~~r~~~~~~~~~e~~~~a~~vg~~avRy~~L~~~~~~~~~Fd~d~-~~~ 521 (611)
+-+ .+..+||++++.+|.++.+||++. +++
T Consensus 293 ev~-----------------------------~pE~lry~~~r~kP~r~~~~d~~~~il~ 323 (521)
T COG1384 293 EVA-----------------------------PPEVLRYLIARTKPNRHIDFDFDLGILK 323 (521)
T ss_pred Hhc-----------------------------CHhHeeeeeeecCCCcceecCCCCChhH
Confidence 983 678899999999999999999887 544
No 78
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=99.48 E-value=3.5e-13 Score=147.66 Aligned_cols=138 Identities=20% Similarity=0.193 Sum_probs=97.8
Q ss_pred EEEccCCcccccCcchhHHHhhhhccCCCeEEEEEeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEeeeeEEcCCCc
Q 007251 367 IIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGK 446 (611)
Q Consensus 367 Vl~ksDG~~tY~t~DiA~~~~r~~~~~~d~iIyV~g~dq~~hf~~l~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~dG~ 446 (611)
|+.|+||.|||.. |-..+-. ..|.+|+| .|.||...-++...+.+++||. .+.+.|+ ++|++.+|+
T Consensus 184 v~~r~dg~ptY~f---avvvDD~-~mgITHvi--RG~d~~~nt~~q~~l~~~lg~~------~P~~~H~--~li~~~~g~ 249 (472)
T COG0008 184 VILRYDGYPTYNF---AVVVDDH-LMGITHVL--RGEDHLDNTPRQIWLYEALGWP------PPVYAHL--PLLLNEDGK 249 (472)
T ss_pred eeecCCCCcccce---eeeechh-hcCCceEE--echhhccCCHHHHHHHHHcCCC------CCcEEEe--eeeecCCCC
Confidence 9999999999964 4333333 35778886 8999988877777889999995 3678898 678889999
Q ss_pred eeeeccCCcccHHHHHHHHHH--HHHHHHHHhcCCCCCCHHHHHHHHhhcCcchhhhhhccCCCCCcccccccccccccC
Q 007251 447 RLRTRFSEVVRLVDLLDEAKN--RSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKG 524 (611)
Q Consensus 447 kmSkR~G~~v~l~dLldea~~--~a~~~~~~r~~~~~~~~~e~~~~a~~vg~~avRy~~L~~~~~~~~~Fd~d~~~~~~g 524 (611)
|||||+| .+.+.++.+++.. +....+.-++. .++++..+...... .+.+|++.....+...||++++...++
T Consensus 250 kLSKr~~-~~~~~~~~~~G~~~~al~~~~allg~--~~~~~~~e~f~~~~---~~~~fd~~~~~~~~~~fd~~kL~~~n~ 323 (472)
T COG0008 250 KLSKRKG-AVSIGEYRVEGWLPPALPNLLALLGR--GYPPEAIEIFSLEE---GIKWFDLTIVSKSPAAFDRKKLDWLNP 323 (472)
T ss_pred eecCccC-ccccchhhhcCCCcHHHHHHHHHhcC--CCChhhHHHHHHHH---HHhhhhhhhhhcccccccHHHhHhhhH
Confidence 9999999 7788876655433 22222222221 23344444444333 477889988889999999999876653
No 79
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.48 E-value=2e-11 Score=137.59 Aligned_cols=154 Identities=15% Similarity=0.224 Sum_probs=96.4
Q ss_pred eeeEEcCCCceeeeccCCcccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHh----hc-------Ccchhhhhhcc
Q 007251 437 FGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAE----AV-------GYGAAKYFDLK 505 (611)
Q Consensus 437 ~g~V~~~dG~kmSkR~G~~v~l~dLldea~~~a~~~~~~r~~~~~~~~~e~~~~a~----~v-------g~~avRy~~L~ 505 (611)
+|||.+..|+|||||.||+|++-|+++-+. ++.+.++-...++++.|++..+. .+ |.||+||.+++
T Consensus 583 H~mVRDa~GRKMSKSLGNVIDPlDVI~Gis---le~L~~~L~~gNLdp~Ev~~a~~gq~kdFPnGIpeCGtDALRFaL~s 659 (995)
T KOG0432|consen 583 HGLVRDAHGRKMSKSLGNVIDPLDVIDGIS---LEKLHAKLLSGNLDPREVEKAKKGQKKDFPNGIPECGTDALRFALCS 659 (995)
T ss_pred chhhccccccccchhhccccCHHHHhcccc---HHHHHHHHHcCCCCHHHHHHHHHHHHhhcCCCCcccchHHHHHHHHH
Confidence 478999999999999999999999998542 22333332234567777666432 23 99999999999
Q ss_pred CCC-CCcccccccccccccCChHHHHH--HHHHHHHHHHHHhCCChhhhhhcCCCCCCCH-HHHHHHHHHHHHHHHHHHH
Q 007251 506 NNR-LTNYTFSFDQMLNDKGNTAVYLL--YAHARICSIIRKSGKDIEELKKTGSLVLDHA-DERALGLHLLHFSEVIEEA 581 (611)
Q Consensus 506 ~~~-~~~~~Fd~d~~~~~~gnt~~ylq--Ya~aRi~SIlrKa~~~~~~~~~~~~~~l~~~-~e~~L~~~l~~fp~~v~~a 581 (611)
... ..|+.+|...+.... -|.+ |..+|- ++...+.+..+.+ .......+. -+.+++..|+.-.+.+.++
T Consensus 660 ~~~~~~dInLDv~rv~g~r----~FcNKlWNa~rF--~l~~lg~~~~p~~-~~~~~~~~~~~d~WIlsrL~~av~~~~~~ 732 (995)
T KOG0432|consen 660 YTTQGRDINLDVLRVEGYR----HFCNKLWNATRF--ALQRLGENFVPSP-TEDLSGNESLVDEWILSRLAEAVEEVNES 732 (995)
T ss_pred ccccCccccccHHHHhhHH----HHHHHHHHHHHH--HHHhcccCCCCCc-ccccCCCcchhHHHHHHHHHHHHHHHHhh
Confidence 865 679999887654310 0111 111111 1222232211100 011111121 4567999999999999999
Q ss_pred HHhcchHHHHH-----HHHHHHHH
Q 007251 582 LTNLLPNVVCE-----YLYNLSEY 600 (611)
Q Consensus 582 ~~~~~P~~l~~-----yL~~La~~ 600 (611)
+++++.+.++. +|++||+.
T Consensus 733 ~~~~~f~~at~a~~~Fwl~~lCDV 756 (995)
T KOG0432|consen 733 LEARNFHLATSALYAFWLYDLCDV 756 (995)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHH
Confidence 99999988875 44555554
No 80
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=99.48 E-value=3.1e-13 Score=138.81 Aligned_cols=183 Identities=17% Similarity=0.200 Sum_probs=127.1
Q ss_pred CCCCCCCCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCccccchHHHHHHHHHHHhc
Q 007251 192 SPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSKN 271 (611)
Q Consensus 192 SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~~~ 271 (611)
.|+|||+|||||+|++++-..+|| +.-|-=+.| |.|... +
T Consensus 6 APSPtG~lHiG~~rtAL~n~l~Ar--~~gG~~iLR---iEDtD~--------------~--------------------- 45 (272)
T TIGR03838 6 APSPSGPLHFGSLVAALGSYLDAR--AHGGRWLVR---IEDLDP--------------P--------------------- 45 (272)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEE---eCcCCC--------------C---------------------
Confidence 599999999999999999999998 345554444 333211 0
Q ss_pred ccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHhcCCeeee--cccccccCcHHHHHHHHHhCCCce
Q 007251 272 RFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEE--KGESFYNPYIPGVIDELSKQGLVE 349 (611)
Q Consensus 272 ~~~~d~~~~~~a~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~LgV~f~~--~~Es~y~~~v~~vi~~L~~~G~~~ 349 (611)
+ ....+.+.+.++|+.||+..|. ...|.+.+...+++++|.++|.+|
T Consensus 46 R-------------------------------~~~~~~~~I~~dL~wLGl~wDe~~~~QS~r~~~Y~~~~~~L~~~G~aY 94 (272)
T TIGR03838 46 R-------------------------------EVPGAADDILRTLEAYGLHWDGEVVYQSQRHALYQAALDRLLAAGLAY 94 (272)
T ss_pred C-------------------------------CChHHHHHHHHHHHHcCCCCCCCeeeeeCCHHHHHHHHHHHHHcCCEE
Confidence 0 0112234567789999999862 234555566788999999999888
Q ss_pred e-------------e-----cc--------------cEEEecc-----------C--------CCCCeEEEccCCccccc
Q 007251 350 E-------------S-----QG--------------ARVIFIE-----------G--------VNIPLIIVKSDGGFNYA 378 (611)
Q Consensus 350 e-------------~-----dG--------------a~~~~~~-----------g--------~~~d~Vl~ksDG~~tY~ 378 (611)
. . +| ++-+++. | ...|.||.|+||.|||.
T Consensus 95 ~C~Ct~eel~~~~~~~~~~y~~~cr~~~~~~~~~~~~~Rlk~~~~~~~~~D~~~g~~~~~~~~~~~D~vi~R~Dg~ptY~ 174 (272)
T TIGR03838 95 PCQCTRKEIAAAAGDGGGIYPGTCRNGLLGRPARPAAWRLRVPDGVIAFDDRLQGPQQQDLAAAVGDFVLRRADGLFAYQ 174 (272)
T ss_pred ecCCCHHHHHHHhcCCCCCCCchhhcccccccCCCceEEEecCCCCceEEEeeeeEEEecCcccCCCEEEEecCCCcccc
Confidence 2 0 01 1112221 1 12578999999999997
Q ss_pred CcchhHHHhhhhccCCCeEEEEEeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEeeeeEEcCCCceeeeccCCcccH
Q 007251 379 STDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRL 458 (611)
Q Consensus 379 t~DiA~~~~r~~~~~~d~iIyV~g~dq~~hf~~l~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~dG~kmSkR~G~~v~l 458 (611)
+|...+-. ..+.+++| .|.||...-++...+.+++||. .+.+.|+ ++|++.+|+|+|||+|.. .+
T Consensus 175 ---fA~vVDD~-~~gIThVi--RG~D~l~~t~~q~~l~~aLg~~------~P~y~H~--pll~~~~g~kLSKR~~~~-~i 239 (272)
T TIGR03838 175 ---LAVVVDDA-AQGITHVV--RGADLLDSTPRQIYLQRLLGLP------PPRYLHL--PLVVNADGEKLSKQNGAP-AL 239 (272)
T ss_pred ---Chhhhhcc-cCCCCEEE--eCHhhhhccHHHHHHHHHhCCC------CCeEEec--hhhhCCCCCeeeccCCcc-ch
Confidence 46555554 46788885 8999987776666889999995 3578998 558889999999999954 45
Q ss_pred HH
Q 007251 459 VD 460 (611)
Q Consensus 459 ~d 460 (611)
++
T Consensus 240 ~~ 241 (272)
T TIGR03838 240 DL 241 (272)
T ss_pred hc
Confidence 44
No 81
>smart00836 DALR_1 DALR anticodon binding domain. This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids PUBMED:10447505.
Probab=99.38 E-value=9.3e-13 Score=119.56 Aligned_cols=82 Identities=40% Similarity=0.720 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHhCCC---hhhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhchhh
Q 007251 530 LLYAHARICSIIRKSGKD---IEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYS 606 (611)
Q Consensus 530 lqYa~aRi~SIlrKa~~~---~~~~~~~~~~~l~~~~e~~L~~~l~~fp~~v~~a~~~~~P~~l~~yL~~La~~fn~fY~ 606 (611)
+||+|+|++||++|++.. .......+...+.++.|+.|+..+..||+++..++.+.+|+.+|+|+++|+..||+||+
T Consensus 1 iqY~~~Ri~nIl~k~~~~~~~~~~~~~~~~~l~~~~~E~~L~~~i~~~~~~i~~~~~~~~~~~l~~~l~~L~~~~~~fy~ 80 (122)
T smart00836 1 VQYAHARICSILRKAGEAGLTLPDIADADLSLLTEPEELALLRLLARFPEVLEAAAETLEPHRLANYLYDLASAFHSFYN 80 (122)
T ss_pred CcHHHHHHHHHHHHHHhcCCCccccccchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHc
Confidence 589999999999998631 11100112233568999999999999999999999999999999999999999999999
Q ss_pred cccCC
Q 007251 607 NCQVQ 611 (611)
Q Consensus 607 ~~~Vl 611 (611)
+|+|+
T Consensus 81 ~v~V~ 85 (122)
T smart00836 81 KCRVL 85 (122)
T ss_pred cCccc
Confidence 99985
No 82
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=99.37 E-value=5.1e-12 Score=131.31 Aligned_cols=136 Identities=20% Similarity=0.207 Sum_probs=95.7
Q ss_pred HHHHHHHHhcCCeeee--cccccccCcHHHHHHHHHhCCCcee-----------e----------cc-------------
Q 007251 310 KEFDKVYKRLRVDLEE--KGESFYNPYIPGVIDELSKQGLVEE-----------S----------QG------------- 353 (611)
Q Consensus 310 ~~~~~~~~~LgV~f~~--~~Es~y~~~v~~vi~~L~~~G~~~e-----------~----------dG------------- 353 (611)
+.+.++|+.||+..|. +..|.+.+...+++++|.++|.+|. . +|
T Consensus 58 ~~I~~dL~wlGl~wDe~~~~QS~r~~~Y~~~~~~L~~~G~aY~C~Ctr~el~~~~~~~~~~~~~y~g~cr~~~~~~~~~~ 137 (299)
T PRK05710 58 DAILADLEWLGLHWDGPVLYQSQRHDAYRAALDRLRAQGLVYPCFCSRKEIAAAAPAPPDGGGIYPGTCRDLLHGPRNPP 137 (299)
T ss_pred HHHHHHHHHCCCCCCCCceEeeccHHHHHHHHHHHHHCCCceecCCCHHHHHHHhhhccCCCCcCCCccccCCccccCCc
Confidence 4566689999998862 2234445567788899999998882 0 11
Q ss_pred cEEEecc-----------C--------CCCCeEEEccCCcccccCcchhHHHhhhhccCCCeEEEEEeCCccccHHHHHH
Q 007251 354 ARVIFIE-----------G--------VNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFS 414 (611)
Q Consensus 354 a~~~~~~-----------g--------~~~d~Vl~ksDG~~tY~t~DiA~~~~r~~~~~~d~iIyV~g~dq~~hf~~l~~ 414 (611)
++-|+++ | .-.|.||.|+||.|+|. +|...+-. ..+.+++| .|.|+...-++...
T Consensus 138 ~iRlk~~~~~~~~~D~~~G~~~~~~~~~~~D~Vi~R~dg~ptY~---lA~vVDD~-~~gIThVv--RG~D~l~~t~~Q~~ 211 (299)
T PRK05710 138 AWRLRVPDAVIAFDDRLQGRQHQDLALAVGDFVLRRADGLFAYQ---LAVVVDDA-LQGVTHVV--RGADLLDSTPRQIY 211 (299)
T ss_pred eEEEEcCCCceEEEEecceeEeeCCCCCCCCEEEEecCCCcccc---chhHHhcc-cCCCCEEE--eChhhhhcCHHHHH
Confidence 1112221 1 12588999999999997 46666655 46788885 89998776555557
Q ss_pred HHHHcCCCCCCCCCCCcEEEEeeeeEEcCCCceeeeccCCcccHHH
Q 007251 415 AAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVD 460 (611)
Q Consensus 415 ~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~dG~kmSkR~G~~v~l~d 460 (611)
+.++|||. .+.+.|+ .+|++.+|+|||||.|.. .+++
T Consensus 212 l~~aLg~~------~P~y~H~--pll~~~~g~kLSKr~~~~-~i~~ 248 (299)
T PRK05710 212 LQQLLGLP------TPRYLHL--PLVLNADGQKLSKQNGAP-ALDA 248 (299)
T ss_pred HHHHcCCC------CCeEEEe--ecccCCCCCcccccCCcc-chhh
Confidence 88999995 3678998 558889999999999854 4444
No 83
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=99.29 E-value=1.8e-11 Score=135.24 Aligned_cols=185 Identities=17% Similarity=0.140 Sum_probs=117.0
Q ss_pred ceEEEEecCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCccccchHHHHH
Q 007251 184 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQ 263 (611)
Q Consensus 184 ~kV~Ve~~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~ 263 (611)
++|+. =-.|+|||+|||||+|++++-..+||- +.|-=+.| +.|... +
T Consensus 10 g~v~t-RFAPsPtG~LHiGharaAlln~l~Ar~--~gG~~iLR---iEDTDp--------------~------------- 56 (523)
T PLN03233 10 GQIVT-RFPPEPSGYLHIGHAKAALLNDYYARR--YKGRLILR---FDDTNP--------------S------------- 56 (523)
T ss_pred CeEEE-eeCCCCCCcccHHHHHHHHHHHHHHHH--hCCEEEEE---ECCCCC--------------C-------------
Confidence 45555 557999999999999999999999984 34544444 233211 0
Q ss_pred HHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHhcCCeeee-cccccccCcHHHHHHHH
Q 007251 264 EFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEE-KGESFYNPYIPGVIDEL 342 (611)
Q Consensus 264 ~~y~~~~~~~~~d~~~~~~a~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~LgV~f~~-~~Es~y~~~v~~vi~~L 342 (611)
+....+.+.+.++++.||+..|. ...|.|.+...++.++|
T Consensus 57 ---------------------------------------R~~~e~~~~I~~dL~WLGl~wD~~~~qSdr~~~y~~~a~~L 97 (523)
T PLN03233 57 ---------------------------------------KEKAEFEESIIEDLGKIEIKPDSVSFTSDYFEPIRCYAIIL 97 (523)
T ss_pred ---------------------------------------ccchHHHHHHHHHHHHhCCCCCCCccccccHHHHHHHHHHH
Confidence 00112234556677777777642 22355555566777777
Q ss_pred HhCCCcee----------------------------------------ecccEEEeccCC-------CCCeEEEccCCcc
Q 007251 343 SKQGLVEE----------------------------------------SQGARVIFIEGV-------NIPLIIVKSDGGF 375 (611)
Q Consensus 343 ~~~G~~~e----------------------------------------~dGa~~~~~~g~-------~~d~Vl~ksDG~~ 375 (611)
.++|.+|. .+|..++++..+ -.|.|+.|+||++
T Consensus 98 i~~G~AY~C~cs~eel~~~r~~~~~~~~R~~s~ee~l~~~~~m~~G~~~~~~~~lR~K~d~~~~n~~~~D~Vi~R~d~~~ 177 (523)
T PLN03233 98 IEEGLAYMDDTPQEEMKKERADRAESKHRNQSPEEALEMFKEMCSGKEEGGAWCLRAKIDMQSDNGTLRDPVLFRQNTTP 177 (523)
T ss_pred HHcCCeEecCCCHHHHHHHHhhhccCccccCCHHHHHHHHHHHhcccccCCCeEEEEeCcccCCCCCCcCCEEEEEcCCc
Confidence 77777762 123444444321 1478999999863
Q ss_pred c---------ccCcchhHHHhhhhccCCCeEEEEEeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEeeeeEEcCCCc
Q 007251 376 N---------YASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGK 446 (611)
Q Consensus 376 t---------Y~t~DiA~~~~r~~~~~~d~iIyV~g~dq~~hf~~l~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~dG~ 446 (611)
- |-|=|+|....-. ..+.+|+| .|.||..+-++...+.+++|+. .+.+ |. |+.+ +..|.
T Consensus 178 h~~~Gd~~~~~PtY~fA~~VDD~-l~gITHvi--Rg~E~~~~t~~q~~l~~aLg~~------~P~~-~~-f~rl-n~~~~ 245 (523)
T PLN03233 178 HHRSGTAYKAYPTYDLACPIVDS-IEGVTHAL--RTTEYDDRDAQFFWIQKALGLR------RPRI-HA-FARM-NFMNT 245 (523)
T ss_pred ccccCCcccceeccCCceeeecc-ccCCCeEE--echhhhcCCHHHHHHHHHhCCC------CCee-ee-eEEE-CCCCC
Confidence 2 2222345444433 35777875 8999988877777888999984 2444 43 6654 57888
Q ss_pred eeeecc
Q 007251 447 RLRTRF 452 (611)
Q Consensus 447 kmSkR~ 452 (611)
|||||+
T Consensus 246 kLSKR~ 251 (523)
T PLN03233 246 VLSKRK 251 (523)
T ss_pred cccccC
Confidence 999997
No 84
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=99.27 E-value=2.8e-11 Score=135.10 Aligned_cols=237 Identities=15% Similarity=0.122 Sum_probs=142.6
Q ss_pred CceEEEEecCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCccccchHHHH
Q 007251 183 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 262 (611)
Q Consensus 183 ~~kV~Ve~~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l 262 (611)
+++|+. =-.|+|||+|||||+|++++-..+||- +.|-=+.| +.|... +-
T Consensus 50 ~~~v~t-RFAPsPtGyLHIGharaAllN~l~Ar~--~gG~~iLR---iEDTDp--------------~R----------- 98 (601)
T PTZ00402 50 EGKVVT-RFPPEASGFLHIGHAKAALINSMLADK--YKGKLVFR---FDDTNP--------------SK----------- 98 (601)
T ss_pred CCeeEE-eeCCCCCCcccHHHHHHHHHHHHHHHH--hCCEEEEE---EcCCCC--------------cc-----------
Confidence 345655 557999999999999999999999984 34544444 233221 00
Q ss_pred HHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHhcCCeeee--cccccccCcHHHHHH
Q 007251 263 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEE--KGESFYNPYIPGVID 340 (611)
Q Consensus 263 ~~~y~~~~~~~~~d~~~~~~a~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~LgV~f~~--~~Es~y~~~v~~vi~ 340 (611)
. ...+.+.+.++++.||+..|. ...|.|.+...++.+
T Consensus 99 ------------~-----------------------------~~e~~d~IleDL~WLGl~wDe~~~~QSdr~d~y~e~a~ 137 (601)
T PTZ00402 99 ------------E-----------------------------KEHFEQAILDDLATLGVSWDVGPTYSSDYMDLMYEKAE 137 (601)
T ss_pred ------------c-----------------------------CHHHHHHHHHHHHHCCCCCCCceeeccccHHHHHHHHH
Confidence 0 011223455577777776542 223555555666777
Q ss_pred HHHhCCCcee----------------------------------------ecccEEEeccC-------CCCCeEEEccC-
Q 007251 341 ELSKQGLVEE----------------------------------------SQGARVIFIEG-------VNIPLIIVKSD- 372 (611)
Q Consensus 341 ~L~~~G~~~e----------------------------------------~dGa~~~~~~g-------~~~d~Vl~ksD- 372 (611)
+|.++|++|. .+|..+++..- .-.|.|+.|.+
T Consensus 138 ~Li~~G~AY~c~cs~eei~~~r~~g~p~~~R~~s~ee~l~~~~~m~~g~~~~~~~~lR~kid~~~~n~~~rD~Vl~R~~~ 217 (601)
T PTZ00402 138 ELIKKGLAYCDKTPREEMQKCRFDGVPTKYRDISVEETKRLWNEMKKGSAEGQETCLRAKISVDNENKAMRDPVIYRVNL 217 (601)
T ss_pred HHHHcCCEEEecCCHHHHHHHHhCCCCCCCCCCCHHHHHHHHHhccccccCCCceEEEEecccCCCCCCccCCEEEEEcC
Confidence 7777777662 01233333220 11366777754
Q ss_pred -----------CcccccCcchhHHHhhhhccCCCeEEEEEeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEeeeeEE
Q 007251 373 -----------GGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVL 441 (611)
Q Consensus 373 -----------G~~tY~t~DiA~~~~r~~~~~~d~iIyV~g~dq~~hf~~l~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~ 441 (611)
|-|+|. +|....-. ..+.+|+| .|.|+..+-++...+.++||+. .+.+.|.+ . +
T Consensus 218 ~~h~rtGdk~dgyPtYd---fA~vVDD~-l~gITHvl--Rg~E~l~~tp~q~~L~~aLg~~------~P~~~h~~--r-L 282 (601)
T PTZ00402 218 TPHARQGTKYKAYPTYD---FCCPIIDS-VEGVTHAL--RTNEYHDRNDQYYWFCDALGIR------KPIVEDFS--R-L 282 (601)
T ss_pred CcccccCCCCceeeccC---cceeeEcc-ccCCceEe--echhhhhCcHHHHHHHHHhCCC------CceEEEEe--e-E
Confidence 555554 44444333 35777875 8999988877777888999995 36788884 4 5
Q ss_pred cCCCceeeeccCCcccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHH----hhcCcchhhhhhccC-CCCCcccccc
Q 007251 442 GEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTA----EAVGYGAAKYFDLKN-NRLTNYTFSF 516 (611)
Q Consensus 442 ~~dG~kmSkR~G~~v~l~dLldea~~~a~~~~~~r~~~~~~~~~e~~~~a----~~vg~~avRy~~L~~-~~~~~~~Fd~ 516 (611)
+.+|.|||||++ ..++++.. -.+|++...-.+. +-+-++++|=|+... ...++..|||
T Consensus 283 n~~g~kLSKRkl-----~~lv~~g~------------v~GWdDprlpTi~glrRrG~~peai~~f~~~~Gvsk~~~~~d~ 345 (601)
T PTZ00402 283 NMEYSVMSKRKL-----TQLVDTHV------------VDGWDDPRFPTVRALVRRGLKMEALRQFVQEQGMSKTVNFMEW 345 (601)
T ss_pred cCCCCcccccCC-----hhhhhcCc------------ccccCCCccHhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCH
Confidence 689999999998 44555431 1223221111111 223455666555555 4568889999
Q ss_pred ccccccc
Q 007251 517 DQMLNDK 523 (611)
Q Consensus 517 d~~~~~~ 523 (611)
+++...+
T Consensus 346 ~~L~~~n 352 (601)
T PTZ00402 346 SKLWYFN 352 (601)
T ss_pred HHHHHHH
Confidence 9886554
No 85
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=99.21 E-value=3.9e-11 Score=120.45 Aligned_cols=217 Identities=15% Similarity=0.075 Sum_probs=131.3
Q ss_pred cCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCccccchHHHHHHHHHHHh
Q 007251 191 SSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSK 270 (611)
Q Consensus 191 ~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~~ 270 (611)
-.|+|||+||+||+|++++....||-. .|-=+.| |.|...
T Consensus 6 FAPsPtG~lHlG~~~~al~~~l~Ar~~--~G~~iLR---ieDtD~----------------------------------- 45 (238)
T cd00807 6 FPPEPNGYLHIGHAKAILLNFGYAKKY--GGRCNLR---FDDTNP----------------------------------- 45 (238)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHh--CCEEEEE---ecCCCC-----------------------------------
Confidence 469999999999999999999999863 4543333 233211
Q ss_pred cccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHhcCCeeee-cccccccCcHHHHHHHHHhCCCce
Q 007251 271 NRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEE-KGESFYNPYIPGVIDELSKQGLVE 349 (611)
Q Consensus 271 ~~~~~d~~~~~~a~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~LgV~f~~-~~Es~y~~~v~~vi~~L~~~G~~~ 349 (611)
. +....+.+.+.++|+.||+..|. ...|.+.+...+++++|.++|.+|
T Consensus 46 -------~------------------------R~~~~~~~~I~~dL~wlGl~wD~~~~QS~r~~~Y~~~~~~L~~~g~aY 94 (238)
T cd00807 46 -------E------------------------KEEEEYVDSIKEDVKWLGIKPYKVTYASDYFDQLYEYAEQLIKKGKAY 94 (238)
T ss_pred -------c------------------------ccchHHHHHHHHHHHHcCCCCCCceecccCHHHHHHHHHHHHHcCCee
Confidence 0 00122234667799999999862 224555567789999999999999
Q ss_pred eecccEEEeccCCCCCeEEEccCCcccccCcchhHHHhhhhccCCCeEEEEEeCCccccHHHHHHHHHHcCCCCCCCCCC
Q 007251 350 ESQGARVIFIEGVNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTY 429 (611)
Q Consensus 350 e~dGa~~~~~~g~~~d~Vl~ksDG~~tY~t~DiA~~~~r~~~~~~d~iIyV~g~dq~~hf~~l~~~~~~lG~~~~~~~~~ 429 (611)
..- .+|+ +.++ .|+|. +|...+-. ..+.+++| .|.|+...-++...+.+++|+.+
T Consensus 95 ~~~------~~~~--~~~i-----~ptY~---lA~vVDD~-~~gIThVv--RG~D~l~~t~~Q~~l~~aLg~~~------ 149 (238)
T cd00807 95 VHH------RTGD--KWCI-----YPTYD---FAHPIVDS-IEGITHSL--CTLEFEDRRPSYYWLCDALRLYR------ 149 (238)
T ss_pred cCC------CCCC--CEEE-----Eeccc---cceEeecc-ccCCCeEE--echhhhcCCHHHHHHHHHcCCCC------
Confidence 821 0111 2222 36664 55555544 35778885 89999776666667889999952
Q ss_pred CcEEEEeeeeEEcCCCceeeeccCCcccHHHHH----HHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhcCcchhhhhhcc
Q 007251 430 PKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLL----DEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLK 505 (611)
Q Consensus 430 ~~~~Hv~~g~V~~~dG~kmSkR~G~~v~l~dLl----dea~~~a~~~~~~r~~~~~~~~~e~~~~a~~vg~~avRy~~L~ 505 (611)
+.+.|. +.+ +.+|.|||||.|.. .+++.. +.........+..+| +-++|++-|+..
T Consensus 150 P~~~~~--~hl-n~~g~kLSKR~~~~-~i~~g~~~~wddpr~~~~~~l~~~G----------------~~peal~~~l~~ 209 (238)
T cd00807 150 PHQWEF--SRL-NLTYTVMSKRKLLQ-LVDEGYVDGWDDPRLPTLRGLRRRG----------------VTPEAIRQFILR 209 (238)
T ss_pred CceeEE--EEE-CCCCCCccCcCchh-ccccCCcccccCcchHHHHHHHHcC----------------CCHHHHHHHHHH
Confidence 333333 334 68999999999632 111100 000000011112211 234566666655
Q ss_pred CC-CCCccccccccccccc
Q 007251 506 NN-RLTNYTFSFDQMLNDK 523 (611)
Q Consensus 506 ~~-~~~~~~Fd~d~~~~~~ 523 (611)
-. ..++..|||+++..+|
T Consensus 210 lG~s~~~~~~~~~~l~~~n 228 (238)
T cd00807 210 QGVSKADSTIDWDKLEACV 228 (238)
T ss_pred hCCCCCCcccCHHHHHHHH
Confidence 43 5689999999876543
No 86
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.21 E-value=4.1e-11 Score=139.31 Aligned_cols=162 Identities=19% Similarity=0.219 Sum_probs=116.3
Q ss_pred EEEEeCCccc-cHHHHH-HHHHHcCCCCCCCCCCCcEEEEeeeeEEcCCCceeeeccCCcccHHHHHHHHHHHHHHHHHH
Q 007251 398 IYVTDVGQQL-HFDMVF-SAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIE 475 (611)
Q Consensus 398 IyV~g~dq~~-hf~~l~-~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~dG~kmSkR~G~~v~l~dLldea~~~a~~~~~~ 475 (611)
+|+-|.||+. -|.... ......|-. +....+.| |++++++|+|||||.||+|.+.|++++
T Consensus 558 ~~lEGsDQ~RGWF~Ssl~~s~a~~~~a----PYk~vltH---GfvlDe~GrKMSKSlGN~v~P~~V~~~----------- 619 (933)
T COG0060 558 FYLEGSDQTRGWFYSSLLTSTALFGRA----PYKNVLTH---GFVLDEKGRKMSKSLGNVVDPQDVIDK----------- 619 (933)
T ss_pred EEEEeccccchhHHHHHHHHHHHcCCc----hHHHHhhc---ccEECCCCCCccccCCCcCCHHHHHHh-----------
Confidence 6789999975 454332 223344543 23333444 889999999999999999999999998
Q ss_pred hcCCCCCCHHHHHHHHhhcCcchhhhhhccCCCCCcccccccccccccCChHHHHHHHHHHHHHHHHHh-----CCChhh
Q 007251 476 RGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHARICSIIRKS-----GKDIEE 550 (611)
Q Consensus 476 r~~~~~~~~~e~~~~a~~vg~~avRy~~L~~~~~~~~~Fd~d~~~~~~gnt~~ylqYa~aRi~SIlrKa-----~~~~~~ 550 (611)
+|.|++|++.++..+..|+.|+++.+..... ++.|+...+|=. +.++..
T Consensus 620 ------------------yGADiLRLwv~ssd~~~dl~~s~~il~~~~~--------~~r~irNt~rF~l~nl~~fdp~~ 673 (933)
T COG0060 620 ------------------YGADILRLWVASSDYWEDLRFSDEILKQVRE--------VYRKIRNTYRFLLGNLDDFDPKK 673 (933)
T ss_pred ------------------hCchheeeeeeecCchhccccCHHHHHHHHH--------HHHHHHHHHHHHHHhccCCCccc
Confidence 7999999999999999999999998433211 122332222211 111111
Q ss_pred hhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH-HHHhchh
Q 007251 551 LKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLS-EYFTRFY 605 (611)
Q Consensus 551 ~~~~~~~~l~~~~e~~L~~~l~~fp~~v~~a~~~~~P~~l~~yL~~La-~~fn~fY 605 (611)
. ......+ .+.++.++..+..+...+.+++++|+.|.+++.|.+++ ..+++||
T Consensus 674 ~-~~~~~~~-~~~Drwil~rl~~l~~~v~eaye~y~f~~v~~~l~~F~~~dLS~~Y 727 (933)
T COG0060 674 D-AVLPEEL-RELDRWILSRLNSLVKEVREAYENYDFHKVVRALMNFVSEDLSNWY 727 (933)
T ss_pred c-ccchhhc-chhHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhHHH
Confidence 0 0000011 34578899999999999999999999999999999999 9999999
No 87
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=99.20 E-value=7.5e-11 Score=131.63 Aligned_cols=234 Identities=15% Similarity=0.092 Sum_probs=140.1
Q ss_pred ceEEEEecCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCccccchHHHHH
Q 007251 184 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQ 263 (611)
Q Consensus 184 ~kV~Ve~~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~ 263 (611)
++|+. =-.|+|||+|||||+|++++-+.+||- |+....--+.|... .
T Consensus 92 ~~vvt-RFaPsPtG~LHiGharaalln~~~Ar~-----~~G~~iLRidDTDp--------------~------------- 138 (560)
T TIGR00463 92 GEVVM-RFAPNPSGPLHIGHARAAILNQYFAKK-----YKGKLIIRFDDTDP--------------R------------- 138 (560)
T ss_pred CeeEE-EeCCCCCCCccHHHHHHHHHHHHHHHh-----cCCEEEEEeCcCCc--------------c-------------
Confidence 45655 557999999999999999999999962 33333333444321 0
Q ss_pred HHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHhcCCeee-ecccccccCcHHHHHHHH
Q 007251 264 EFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLE-EKGESFYNPYIPGVIDEL 342 (611)
Q Consensus 264 ~~y~~~~~~~~~d~~~~~~a~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~LgV~f~-~~~Es~y~~~v~~vi~~L 342 (611)
+ .. ..+.+.|.++++.||+..+ ....|.|.+...++++.|
T Consensus 139 --------R--~~-----------------------------~e~~~~I~edL~wLGi~~d~~~~qSd~~~~y~~~a~~L 179 (560)
T TIGR00463 139 --------R--VK-----------------------------PEAYDMILEDLDWLGVKGDEVVYQSDRIEEYYDYCRKL 179 (560)
T ss_pred --------c--cc-----------------------------HHHHHHHHHHHHHcCCCCCccccccccHHHHHHHHHHH
Confidence 0 00 1123456778999999874 233566767788888999
Q ss_pred HhCCCceee----------------------------------------cccEEEeccC-------CCCCeEEEccCCcc
Q 007251 343 SKQGLVEES----------------------------------------QGARVIFIEG-------VNIPLIIVKSDGGF 375 (611)
Q Consensus 343 ~~~G~~~e~----------------------------------------dGa~~~~~~g-------~~~d~Vl~ksDG~~ 375 (611)
.++|++|.. +|..++++.- .-.|.|+.|.++++
T Consensus 180 i~~G~AY~C~cs~eei~~~r~~g~~~~cR~~s~eenl~~fe~m~~g~~~~~~~~lR~K~d~~~~n~~~rD~V~~R~~~~~ 259 (560)
T TIGR00463 180 IEMGKAYVCDCPPEEFRELRNDGVACACRDRSVEENLEIWEEMLNGTEEGGKVVVRAKTDYKHKNPAIRDWVIFRINKTP 259 (560)
T ss_pred HHcCCceeecCCHHHHHHHHhCCCCCCccCCCHHHHHHHHHHHhcccccCCCeEEEEECCCcCCCccccCcEEEEecCCC
Confidence 999988830 1222443321 11367788887654
Q ss_pred c---------ccCcchhHHHhhhhccCCCeEEEEEeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEeeeeEEcCCCc
Q 007251 376 N---------YASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGK 446 (611)
Q Consensus 376 t---------Y~t~DiA~~~~r~~~~~~d~iIyV~g~dq~~hf~~l~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~dG~ 446 (611)
- |.|=|+|....-. ..|.+|+| .|.|+...-.+...+..++|+. .+.+.|.+ ++.+.+|.
T Consensus 260 h~~~Gd~~~~~PtYdfA~~VDD~-l~gITHvi--Rg~E~~~nT~rq~yl~~~lg~~------~P~~~h~~--~l~~~~~~ 328 (560)
T TIGR00463 260 HPRTGDKYKVYPTMDFSVPIDDH-LLGVTHVL--RGKDHIDNERKQQYIYMYFGWE------LPEFIHWG--RLKINDVR 328 (560)
T ss_pred ccccCCEEEEEeccccceEeecc-cCCCCeEE--echhhhcCCHHHHHHHHHcCCC------CCeEEEEc--ceecCCCc
Confidence 3 3333455444433 35777775 7888866333444556788984 35788884 57778888
Q ss_pred eeeeccCCcccHHHHHHHH-------HHHHHHHHHHhcCCCCCCHHHHHHHHhhcCcchhhhhhccCCC-CCcccccccc
Q 007251 447 RLRTRFSEVVRLVDLLDEA-------KNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNR-LTNYTFSFDQ 518 (611)
Q Consensus 447 kmSkR~G~~v~l~dLldea-------~~~a~~~~~~r~~~~~~~~~e~~~~a~~vg~~avRy~~L~~~~-~~~~~Fd~d~ 518 (611)
++|||..-- .|.+.. ..-....+..|| +-++|+|-|++.... .++..++|+.
T Consensus 329 kLskk~k~~----~l~~g~~~gWdDPr~~ti~~lrrrG----------------~~peAi~~f~~~~G~s~~~~~i~~~~ 388 (560)
T TIGR00463 329 TLSTSSKLK----GIVRGDYSGWDDPRLPTLRAVRRRG----------------ITPEAIRNFMLSIGVKRNDVNLSWKN 388 (560)
T ss_pred Eecchhhhh----hhhccCccCcCCccHHHHHHHHHCC----------------CCHHHHHHHHHHhCCCCCCceeeHHH
Confidence 999876411 111100 000122233332 345778877777753 5677888887
Q ss_pred cc
Q 007251 519 ML 520 (611)
Q Consensus 519 ~~ 520 (611)
+-
T Consensus 389 l~ 390 (560)
T TIGR00463 389 IY 390 (560)
T ss_pred HH
Confidence 53
No 88
>PLN02907 glutamate-tRNA ligase
Probab=99.19 E-value=8.8e-11 Score=135.46 Aligned_cols=239 Identities=14% Similarity=0.123 Sum_probs=145.8
Q ss_pred ceEEEEecCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCccccchHHHHH
Q 007251 184 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQ 263 (611)
Q Consensus 184 ~kV~Ve~~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~ 263 (611)
++|+. =-.|+|||+|||||+|++++...+|| .+-|-=+.| +.|... +
T Consensus 212 ~~v~t-RFaPsPtG~LHiG~ar~al~n~~~Ar--~~~G~~iLR---~eDTdp--------------~------------- 258 (722)
T PLN02907 212 GKVCT-RFPPEPSGYLHIGHAKAALLNQYFAR--RYKGKLIVR---FDDTNP--------------S------------- 258 (722)
T ss_pred CceEE-eeCCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEE---ecCCCC--------------C-------------
Confidence 45555 55799999999999999999999998 345554444 233211 0
Q ss_pred HHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHhcCCeeee-cccccccCcHHHHHHHH
Q 007251 264 EFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEE-KGESFYNPYIPGVIDEL 342 (611)
Q Consensus 264 ~~y~~~~~~~~~d~~~~~~a~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~LgV~f~~-~~Es~y~~~v~~vi~~L 342 (611)
+ . ...+.+.+.++++.||+..|. ...|.|.+...+..++|
T Consensus 259 --------r--~-----------------------------~~e~~~~I~~dl~wLG~~~d~~~~qS~r~~~y~~~a~~L 299 (722)
T PLN02907 259 --------K--E-----------------------------SDEFVENILKDIETLGIKYDAVTYTSDYFPQLMEMAEKL 299 (722)
T ss_pred --------c--C-----------------------------ChHHHHHHHHHHHHcCCCCCCcccccccHHHHHHHHHHH
Confidence 0 0 012234566688888888752 23455656677888888
Q ss_pred HhCCCceee----------------------------------------cccEEEeccC-------CCCCeEEEccCCcc
Q 007251 343 SKQGLVEES----------------------------------------QGARVIFIEG-------VNIPLIIVKSDGGF 375 (611)
Q Consensus 343 ~~~G~~~e~----------------------------------------dGa~~~~~~g-------~~~d~Vl~ksDG~~ 375 (611)
.++|.+|.. +|..+++..- .-.|.|+.|.||++
T Consensus 300 i~~G~aY~~~~~~~~~~~~~~~~~~~~~R~~~~ee~~~~~~~m~~g~~~~~~~~lR~k~d~~~~n~~~~D~v~~R~~~~~ 379 (722)
T PLN02907 300 IKEGKAYVDDTPREQMRKERMDGIESKCRNNSVEENLRLWKEMIAGSERGLQCCVRGKLDMQDPNKSLRDPVYYRCNPTP 379 (722)
T ss_pred HHcCCeeecCCCHHHHHHHHhcCCCCCccCCCHHHHHHHHHHHhcccccCCCeEEEEEcccCCCCCCcccCEEEEecCCc
Confidence 888888721 1222333221 11377888998844
Q ss_pred cccC---------cchhHHHhhhhccCCCeEEEEEeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEeeeeEEcCCCc
Q 007251 376 NYAS---------TDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGK 446 (611)
Q Consensus 376 tY~t---------~DiA~~~~r~~~~~~d~iIyV~g~dq~~hf~~l~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~dG~ 446 (611)
-+.+ =|+|....-. ..+.+|+| .|.||..+-++...+.++||+.. +...| |+.+ +.+|.
T Consensus 380 h~~~gd~~~~~PtY~fa~~vdD~-~~gIThvl--Rg~e~~~~t~~q~~l~~~lg~~~------p~~~~--f~~l-~~~~~ 447 (722)
T PLN02907 380 HHRIGSKYKVYPTYDFACPFVDA-LEGVTHAL--RSSEYHDRNAQYYRILEDMGLRK------VHIWE--FSRL-NFVYT 447 (722)
T ss_pred ccccCCccceeeccCCceEEEcc-cCCCceEe--ecHhhhhChHHHHHHHHHcCCCC------CeeEE--EEEE-cCCCc
Confidence 3222 2234333322 35677775 89999888777778899999842 22333 4554 47888
Q ss_pred eeeeccCCcccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhh----cCcchhhhhhccCC-CCCccccccccccc
Q 007251 447 RLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEA----VGYGAAKYFDLKNN-RLTNYTFSFDQMLN 521 (611)
Q Consensus 447 kmSkR~G~~v~l~dLldea~~~a~~~~~~r~~~~~~~~~e~~~~a~~----vg~~avRy~~L~~~-~~~~~~Fd~d~~~~ 521 (611)
+||||+ +..++++. .-.+|++..+-.+... +-++|++-|++... ..++..|||+++.+
T Consensus 448 ~lSKR~-----l~~~v~~g------------~v~Gwddpr~pt~~~~rrrG~~~eai~~f~~~~g~s~~~~~~~~~~l~~ 510 (722)
T PLN02907 448 LLSKRK-----LQWFVDNG------------KVEGWDDPRFPTVQGIVRRGLKIEALKQFILSQGASKNLNLMEWDKLWT 510 (722)
T ss_pred cccccc-----hHhHhhcC------------cccCCCCCCcccHHHHHHcCCCHHHHHHHHHHhCCCcCCccccHHHHHH
Confidence 999998 56666653 2223433221111111 44677777776664 46788999998765
Q ss_pred cc
Q 007251 522 DK 523 (611)
Q Consensus 522 ~~ 523 (611)
.|
T Consensus 511 ~n 512 (722)
T PLN02907 511 IN 512 (722)
T ss_pred HH
Confidence 44
No 89
>KOG1247 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.16 E-value=4.3e-10 Score=117.86 Aligned_cols=332 Identities=15% Similarity=0.191 Sum_probs=210.5
Q ss_pred CCCceEEEEecCCCCCCCCcchhhhH-HHHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCccccchH
Q 007251 181 LRVKKAVVDFSSPNIAKEMHVGHLRS-TIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAI 259 (611)
Q Consensus 181 ~~~~kV~Ve~~SpNp~kplHvGHlRs-aiiGDsLariL~~~Gy~V~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~i 259 (611)
.+...+++--.=|-++...|+|+.-+ ...+|+.||+.++.|+...+..-.+.+|+...+
T Consensus 11 ~n~rnilitsalpyvnnvphlgNIIg~vlsAdV~Aryc~~r~~~~~yicGTDEYgtatet-------------------- 70 (567)
T KOG1247|consen 11 PNERNILITSALPYVNNVPHLGNIIGSVLSADVFARYCPLRGPNTLYICGTDEYGTATET-------------------- 70 (567)
T ss_pred CCccceeeecccceecccccccceeeEEeehhhhcccccCCCCceEEeccccccchhhHH--------------------
Confidence 34567888888888899999999774 445999999999999999888766666653221
Q ss_pred HHHHHHHHHHhcccCCChHHHHHHHHHHHHHccC-ChHHHHHHHHHHHHHHHHHHHHHHhcCCeeeecccc---cccCcH
Q 007251 260 GELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSG-EPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGES---FYNPYI 335 (611)
Q Consensus 260 ~~l~~~y~~~~~~~~~d~~~~~~a~~~~~~le~g-d~e~~~~w~~~~~~~~~~~~~~~~~LgV~f~~~~Es---~y~~~v 335 (611)
..+|+| .| +++|+....-++..|+.++|.||+++.. -..+..
T Consensus 71 ----------------------------kaleeg~tP------~elcdKyh~ihk~vy~Wf~IdfD~fgrtTT~~qT~i~ 116 (567)
T KOG1247|consen 71 ----------------------------KALEEGLTP------QELCDKYHGIHKVVYDWFKIDFDEFGRTTTKTQTEIC 116 (567)
T ss_pred ----------------------------HHHHccCCH------HHHHHhcchhHHHHHHhhcccccccCcccCcchhHHH
Confidence 111222 12 4678888888999999999999988752 224678
Q ss_pred HHHHHHHHhCCCceeec--ccEEEe---------cc------------CC---------------CCCeEEEccCCcccc
Q 007251 336 PGVIDELSKQGLVEESQ--GARVIF---------IE------------GV---------------NIPLIIVKSDGGFNY 377 (611)
Q Consensus 336 ~~vi~~L~~~G~~~e~d--Ga~~~~---------~~------------g~---------------~~d~Vl~ksDG~~tY 377 (611)
+.++..|.++|++-+.. --.|-. ++ || ++.+.+.+ -+|+|
T Consensus 117 Q~iF~kl~~ng~~se~tv~qLyC~vc~~fladr~veg~cp~C~yd~ARGDqcd~cG~l~N~~el~~pkc~ic~--~~p~~ 194 (567)
T KOG1247|consen 117 QDIFSKLYDNGYLSEQTVKQLYCEVCDTFLADRFVEGKCPFCGYDDARGDQCDKCGKLVNAAELKIPKCKICQ--AGPVV 194 (567)
T ss_pred HHHhhchhhcCCcccceeeeEEehhhcccccchhhhccCCCCCCccccchhhhhhhhhcCHHHhcCcchheec--cCCee
Confidence 88999999999876532 111110 01 11 01111111 11222
Q ss_pred cCc-----ch---------------------------hHHHhhhh----------cc--------CCCeEEEEEeCCccc
Q 007251 378 AST-----DL---------------------------AALWYRLN----------EE--------KAEWIIYVTDVGQQL 407 (611)
Q Consensus 378 ~t~-----Di---------------------------A~~~~r~~----------~~--------~~d~iIyV~g~dq~~ 407 (611)
..+ |+ .-.|-|.. .| --|+++|||-....+
T Consensus 195 ~~t~h~Fl~L~kl~~~lee~~~~~~~~~~WS~Na~~it~sWlk~gl~pRCiTRDLkWGtpVPle~fk~KVfYVWFDA~IG 274 (567)
T KOG1247|consen 195 RQTQHLFLSLDKLEPRLEEWLRRTLVEGDWSQNAQNITRSWLKDGLKPRCITRDLKWGTPVPLEKFKDKVFYVWFDAPIG 274 (567)
T ss_pred eeeeEEEEEhHHhHHHHHHHHHhccccCCCccchHHHHHHHHHccccccccccccccCCCcChhhhcccEEEEEEcCcce
Confidence 211 11 11111100 11 137999999776555
Q ss_pred cHH----------HHH------HHHHHcCCCCC--C------------CCCCCcEEEEe-eeeEEcCCCceeeeccCCcc
Q 007251 408 HFD----------MVF------SAAKRAGWLSA--D------------DSTYPKASHVG-FGLVLGEDGKRLRTRFSEVV 456 (611)
Q Consensus 408 hf~----------~l~------~~~~~lG~~~~--~------------~~~~~~~~Hv~-~g~V~~~dG~kmSkR~G~~v 456 (611)
+.. +.+ +..+.||.+.- | +.| ..+.|++ -..++-++| |+|||+|..|
T Consensus 275 Ylsit~~yt~ew~kWwknpE~v~LyqFmgKDNVpFHtviFP~s~lgt~en~-t~v~~l~aTeYLnyE~g-KFSKSrgvGv 352 (567)
T KOG1247|consen 275 YLSITKNYTDEWEKWWKNPENVELYQFMGKDNVPFHTVIFPCSQLGTEENY-TVVHHLSATEYLNYEDG-KFSKSRGVGV 352 (567)
T ss_pred EEEeehhhhHHHHHHhcCHhhhhHHHHhccCCCcceeeecchhhhcCCCCc-hhheeechhhhhccccC-cccccccccc
Confidence 422 111 34455664210 0 011 1122221 012344566 7999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhcCcchhhhhhccCCCC-Cccccccccccccc-----CChHHHH
Q 007251 457 RLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRL-TNYTFSFDQMLNDK-----GNTAVYL 530 (611)
Q Consensus 457 ~l~dLldea~~~a~~~~~~r~~~~~~~~~e~~~~a~~vg~~avRy~~L~~~~~-~~~~Fd~d~~~~~~-----gnt~~yl 530 (611)
.=.++-+.. ++++..||++|+..|. +|..|+|+++.... +|.|+||
T Consensus 353 FG~~aqd~g----------------------------i~~~vWRyYLl~~RPEssDs~Fsw~df~~k~nseLl~NLGNFv 404 (567)
T KOG1247|consen 353 FGNDAQDTG----------------------------IPASVWRYYLLYIRPESSDSAFSWDDFVLKVNSELLNNLGNFV 404 (567)
T ss_pred cccccccCC----------------------------CCHHHHHHHHhhccCcccCCcCcHHHHHHHhhHHHHHHHHHHH
Confidence 887777763 6888999999999885 79999999987643 3677787
Q ss_pred HHHHHHHHHHHHHhCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhchhhcc
Q 007251 531 LYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNC 608 (611)
Q Consensus 531 qYa~aRi~SIlrKa~~~~~~~~~~~~~~l~~~~e~~L~~~l~~fp~~v~~a~~~~~P~~l~~yL~~La~~fn~fY~~~ 608 (611)
+|+.+.......+. ++. ..+++. ...|+..+..+-....++++.-......+-+++++..-|.|....
T Consensus 405 ----NR~l~fv~~~~~g~--Vp~---~~~~~~-~~~~~~dv~~~~~~y~~~me~vklr~~l~~~m~is~~GNqylQ~~ 472 (567)
T KOG1247|consen 405 ----NRVLKFVAAKYNGV--VPE---MELTSG-DKKLLEDVNELLAKYVAAMEKVKLREALKTAMEISRRGNQYLQEN 472 (567)
T ss_pred ----HHHHHHHHHhhCCc--ccc---eeecCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhcc
Confidence 68888765432222 111 223333 567888888888888888888888889999999999999987654
No 90
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=99.15 E-value=3.4e-10 Score=125.63 Aligned_cols=115 Identities=10% Similarity=-0.019 Sum_probs=73.0
Q ss_pred CCeEEEcc-------CC-----cccccCcchhHHHhhhhccCCCeEEEEEeCCccccHHHHHHHHHHcCCCCCCCCCCCc
Q 007251 364 IPLIIVKS-------DG-----GFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPK 431 (611)
Q Consensus 364 ~d~Vl~ks-------DG-----~~tY~t~DiA~~~~r~~~~~~d~iIyV~g~dq~~hf~~l~~~~~~lG~~~~~~~~~~~ 431 (611)
.|.|+.|+ +| .|||. +|....-. ..+.+|+| .|.+|..+-++...+.+++|+.. .+.
T Consensus 189 rD~Vi~R~~~~~H~r~G~k~~iyPtYd---fA~~vdD~-l~gITHvl--Rg~E~~~~t~~~~~i~~alg~~~-----~P~ 257 (554)
T PRK05347 189 RDPVLYRIRHAHHHRTGDKWCIYPMYD---FAHCISDA-IEGITHSL--CTLEFEDHRPLYDWVLDNLPIPP-----HPR 257 (554)
T ss_pred CCCEEEEecCCCCCccCCceeeecCcC---ccceeecc-ccCCceEE--eccccccChHHHHHHHHHcCCCC-----CCc
Confidence 37788887 46 56664 45444333 35778886 89999888888878899998621 132
Q ss_pred EEEEeeeeEEcCCCceeeeccCCc------c---------cHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhcCc
Q 007251 432 ASHVGFGLVLGEDGKRLRTRFSEV------V---------RLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGY 496 (611)
Q Consensus 432 ~~Hv~~g~V~~~dG~kmSkR~G~~------v---------~l~dLldea~~~a~~~~~~r~~~~~~~~~e~~~~a~~vg~ 496 (611)
.. .|+.+ +.+|.+||||++.. | |+..|.+.+ +-+
T Consensus 258 ~~--~F~rl-n~~~~~LSKRkl~~lV~~g~v~GWDDPRl~Ti~~lrrrG----------------------------~~P 306 (554)
T PRK05347 258 QY--EFSRL-NLTYTVMSKRKLKQLVEEKHVDGWDDPRMPTISGLRRRG----------------------------YTP 306 (554)
T ss_pred eE--EEEEE-CCCCCccccccchhccccCcccCccCCcchhHHHHHHCC----------------------------CCH
Confidence 22 24554 46889999999642 1 455555553 345
Q ss_pred chhhhhhccCCC-CCcccccccccc
Q 007251 497 GAAKYFDLKNNR-LTNYTFSFDQML 520 (611)
Q Consensus 497 ~avRy~~L~~~~-~~~~~Fd~d~~~ 520 (611)
+|++-|++.... .++..++|+.+-
T Consensus 307 eAi~nf~~~lG~s~~~~~i~~~~L~ 331 (554)
T PRK05347 307 ESIREFCERIGVTKQDSVIDMSMLE 331 (554)
T ss_pred HHHHHHHHHhCCCCCCCeecHHHHH
Confidence 666666666543 456677777653
No 91
>KOG1149 consensus Glutamyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis]
Probab=99.15 E-value=2.5e-10 Score=120.30 Aligned_cols=135 Identities=18% Similarity=0.172 Sum_probs=88.5
Q ss_pred CCCeEEEccCCcccccCcchhHHHhhhhccCCCeEEEEEeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEeeeeEEc
Q 007251 363 NIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLG 442 (611)
Q Consensus 363 ~~d~Vl~ksDG~~tY~t~DiA~~~~r~~~~~~d~iIyV~g~dq~~hf~~l~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~ 442 (611)
..|.||+||||-|||.. |...+.. ..+..|+| .|.+|.---.....+.+++||.| +++.|++. +++
T Consensus 211 ~gD~VvmKSDgfPTYHf---AnVVDDh-~M~IsHVi--RGeEWlpST~KH~lLYkAfgW~p------PkFaHlpL--l~n 276 (524)
T KOG1149|consen 211 EGDPVVMKSDGFPTYHF---ANVVDDH-LMGISHVI--RGEEWLPSTLKHILLYKAFGWQP------PKFAHLPL--LLN 276 (524)
T ss_pred CCCcEEEecCCCcceee---eeeecch-hcchhhee--ecchhccccHHHHHHHHHhCCCC------Cceeeeee--eec
Confidence 46789999999999985 3333322 24566775 78887654444446779999964 68999965 778
Q ss_pred CCCceeeeccCCcccHHHHHHHHHH--HHHHHHHHhc-----CCCCCCHHHHHHHHhhcCcchhhhhhccCCCCCccccc
Q 007251 443 EDGKRLRTRFSEVVRLVDLLDEAKN--RSKAVLIERG-----KDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFS 515 (611)
Q Consensus 443 ~dG~kmSkR~G~~v~l~dLldea~~--~a~~~~~~r~-----~~~~~~~~e~~~~a~~vg~~avRy~~L~~~~~~~~~Fd 515 (611)
+||+|+|||.|.+ .+..+.+++.- ..++.+.--| .+..++-+|. +--|.+.+-..++..+|
T Consensus 277 ~d~sKLSKRqgD~-~vs~~~e~G~LPeallN~ial~Gwg~~~~~~f~sl~eL-----------ieqF~i~~ltk~~a~ld 344 (524)
T KOG1149|consen 277 PDGSKLSKRQGDA-SVSHYREQGYLPEALLNYIALLGWGFRTENEFFSLEEL-----------IEQFSIERLTKSNAILD 344 (524)
T ss_pred CCcchhhhhcCcc-hHHHHHHcCCChHHHHHHHHHcCCCcccccccccHHHH-----------HHHhchhhhcccccccC
Confidence 9999999999954 67777776532 2333333221 2223333333 22455666666777888
Q ss_pred cccccccc
Q 007251 516 FDQMLNDK 523 (611)
Q Consensus 516 ~d~~~~~~ 523 (611)
.+++..+|
T Consensus 345 ~ekL~~~N 352 (524)
T KOG1149|consen 345 SEKLRFLN 352 (524)
T ss_pred HHHHHHHH
Confidence 88776655
No 92
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=99.15 E-value=5e-10 Score=133.29 Aligned_cols=165 Identities=12% Similarity=0.074 Sum_probs=115.9
Q ss_pred cCCCeEEEEEeCCccc-cHHHHHHHHHHcCCCCCCCCCCCcEEEEeeeeEEcCCCceeeeccCCcccHHHHHHHHHHHHH
Q 007251 392 EKAEWIIYVTDVGQQL-HFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSK 470 (611)
Q Consensus 392 ~~~d~iIyV~g~dq~~-hf~~l~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~dG~kmSkR~G~~v~l~dLldea~~~a~ 470 (611)
+.+| +++.|.||.. |.- .+.....+.+.. .+|+..+.+ +|+|+. +|+|||||+||+|++.|++++
T Consensus 529 ~P~D--~~~~GkDii~~Hl~-~~~~~~~a~~~~--~~~Pk~v~~--hG~vl~-~G~KMSKS~GNvVdp~eii~~------ 594 (897)
T PRK12300 529 YPVD--WRHSGKDLIPNHLT-FFIFNHVAIFPE--EKWPRGIVV--NGFVLL-EGKKMSKSKGNVIPLRKAIEE------ 594 (897)
T ss_pred CCce--EEEeeeccCccHHH-HHHHHHHHhcCC--CccCcEEEE--cceEEE-CCccccCcCCCCCCHHHHHHH------
Confidence 3556 6789999954 211 111122222321 134445544 488886 899999999999999999998
Q ss_pred HHHHHhcCCCCCCHHHHHHHHhhcCcchhhhhhccC-CCCCcccccccccccccCChHHHHHHHHHHHHHHHHHhCCChh
Q 007251 471 AVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKN-NRLTNYTFSFDQMLNDKGNTAVYLLYAHARICSIIRKSGKDIE 549 (611)
Q Consensus 471 ~~~~~r~~~~~~~~~e~~~~a~~vg~~avRy~~L~~-~~~~~~~Fd~d~~~~~~gnt~~ylqYa~aRi~SIlrKa~~~~~ 549 (611)
+|+|++||++++. ....|.+|+++.+... +.+ ..|+.++.++......
T Consensus 595 -----------------------yGaDalRl~L~~~~~~~~D~~fs~~~v~~~----~~~----l~r~~~~~~~~~~~~~ 643 (897)
T PRK12300 595 -----------------------YGADVVRLYLTSSAELLQDADWREKEVESV----RRQ----LERFYELAKELIEIGG 643 (897)
T ss_pred -----------------------cChHHHHHHHHhCCCCCCCCccCHHHHHHH----HHH----HHHHHHHHHHHhcCCC
Confidence 7999999999986 5689999999876432 222 3577777776522110
Q ss_pred hhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHH-HHHHHHhchhhcc
Q 007251 550 ELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLY-NLSEYFTRFYSNC 608 (611)
Q Consensus 550 ~~~~~~~~~l~~~~e~~L~~~l~~fp~~v~~a~~~~~P~~l~~yL~-~La~~fn~fY~~~ 608 (611)
. ..+ .+.+++++..+..+.+.+.+++++++++.+++.++ .+...+|.|.+.+
T Consensus 644 -----~-~~~-~~~D~wils~l~~~i~~v~~~~e~~~~~~A~~~i~~~l~~~~n~Yi~~~ 696 (897)
T PRK12300 644 -----E-EEL-RFIDKWLLSRLNRIIKETTEAMESFQTRDAVQEAFYELLNDLRWYLRRV 696 (897)
T ss_pred -----c-ccc-CHhHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 0 111 34567899999999999999999999999998875 7888888766544
No 93
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=99.13 E-value=3.3e-10 Score=136.97 Aligned_cols=170 Identities=15% Similarity=0.169 Sum_probs=111.3
Q ss_pred EEEEeCCccc-cHHHHHH-HHHHcCCCCCCCCCCCcEEEEeeeeEEcCCCceeeeccCCcccHHHHHHHHHHHHHHHHHH
Q 007251 398 IYVTDVGQQL-HFDMVFS-AAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIE 475 (611)
Q Consensus 398 IyV~g~dq~~-hf~~l~~-~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~dG~kmSkR~G~~v~l~dLldea~~~a~~~~~~ 475 (611)
+++.|.||.. +|..+.. .....|-. |+...+. +|+|++++|+|||||+||+|.+.+++++
T Consensus 676 ~i~eG~Dq~rgWf~s~l~~s~~l~~~~----PfK~Vlv---HG~Vld~dG~KMSKSlGNvIDP~evI~k----------- 737 (1205)
T PTZ00427 676 FIAEGLDQTRGWFYTLLVISTLLFDKA----PFKNLIC---NGLVLASDGKKMSKRLKNYPDPLYILDK----------- 737 (1205)
T ss_pred EEEEecchhccHHHHHHHHHHHhcCCC----CcceeEE---ccEEEcCCCCCcccCCCCCCCHHHHHHh-----------
Confidence 3456777644 5554432 23344543 3433344 4999999999999999999999999998
Q ss_pred hcCCCCCCHHHHHHHHhhcCcchhhhhhccCCC--CCcccccccccccc-cCChHHHHHHHHHHHHHH-HHHhCC-Chhh
Q 007251 476 RGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNR--LTNYTFSFDQMLND-KGNTAVYLLYAHARICSI-IRKSGK-DIEE 550 (611)
Q Consensus 476 r~~~~~~~~~e~~~~a~~vg~~avRy~~L~~~~--~~~~~Fd~d~~~~~-~gnt~~ylqYa~aRi~SI-lrKa~~-~~~~ 550 (611)
+|+||+||++++... ..++.|+++.+.+. +....+. |...|-... +..+.. +...
T Consensus 738 ------------------YGADaLR~~Lls~~~~~~~Dl~Fse~~v~e~~r~~l~kl--wN~~rF~~~~i~~~~~~~~~~ 797 (1205)
T PTZ00427 738 ------------------YGADSLRLYLINSVAVRAENLKFQEKGVNEVVKSFILPF--YHSFRFFSQEVTRYECLNKKQ 797 (1205)
T ss_pred ------------------cCCcHHHHHHHhcCCCCCcccccCHHHHHHHHHHHHHHH--HHHHHHHHhcccccccccccc
Confidence 799999999998743 58999999886432 1111111 111122211 111100 0000
Q ss_pred hh-hcCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhchh
Q 007251 551 LK-KTGS-LVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFY 605 (611)
Q Consensus 551 ~~-~~~~-~~l~~~~e~~L~~~l~~fp~~v~~a~~~~~P~~l~~yL~~La~~fn~fY 605 (611)
.. .... ..-..+.+++|+..+..+.+.+.+++++|+++.+++.++++...+..||
T Consensus 798 f~~~~~~~~~~~~~~DrWILs~l~~li~~v~~~me~Y~f~~A~~~i~~Fi~~lsnwY 854 (1205)
T PTZ00427 798 FLFNTDYIYKNDNIMDQWIFSSVQSLTKSVHTEMKAYKLYNVLPKLLQFIENLTNWY 854 (1205)
T ss_pred CCcCcccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHH
Confidence 00 0000 0012456788999999999999999999999999999999998899998
No 94
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=99.00 E-value=5.7e-09 Score=115.67 Aligned_cols=113 Identities=12% Similarity=-0.001 Sum_probs=66.1
Q ss_pred cCCCeEEEEEeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEeeeeEEcCCCceeeeccCCc---------------c
Q 007251 392 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEV---------------V 456 (611)
Q Consensus 392 ~~~d~iIyV~g~dq~~hf~~l~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~dG~kmSkR~G~~---------------v 456 (611)
.+.+|+| .|.+|..+-.+-..+.+.+|+.. .+. +..|+.+ +.+|.|||||++.. .
T Consensus 196 ~gITHvi--Rg~E~~~nt~~Y~~~~~~l~~~~-----~P~--~~~F~rl-n~~~~kLSKRk~~~~V~~g~v~GWdDPRl~ 265 (522)
T TIGR00440 196 ENITHSL--CTLEFQDNRRLYDWVLDNIHIFP-----RPA--QYEFSRL-NLEGTVLSKRKLAQLVDDKFVRGWDDPRMP 265 (522)
T ss_pred CCCceEe--ecHhhhhcHHHHHHHHHhcCccC-----CCc--eEEEEEE-CCCCCCcccccchhccccCcccCCCCCccc
Confidence 4667775 78888777665556667777631 122 2245654 57899999999875 3
Q ss_pred cHHHHHHHHHH-HH-HHHHHHhcCCCCCCHHHHHHHHhhcCcchhhhhhccCCCCCccccccccc
Q 007251 457 RLVDLLDEAKN-RS-KAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQM 519 (611)
Q Consensus 457 ~l~dLldea~~-~a-~~~~~~r~~~~~~~~~e~~~~a~~vg~~avRy~~L~~~~~~~~~Fd~d~~ 519 (611)
++..+.+.+.. .| .+.+..-|-...-+..++..+. ..+|.|++...+.....||..++
T Consensus 266 Ti~~lrrrG~~PeAi~nfl~~lG~s~~~~~~e~~~l~-----~~~r~f~~~~~~r~~av~d~~kl 325 (522)
T TIGR00440 266 TISGLRRRGYTPASIREFCNRIGVTKQDNNIEVVRLE-----SCIREDLNENAPRAMAVIDPVEV 325 (522)
T ss_pred cHHHHHHCCCCHHHHHHHHHHhCCCCCCCceehhhHH-----HHHHHhhhhcCcccccccccceE
Confidence 77888776543 22 2233332211110001111111 24677888888888888888877
No 95
>PLN02859 glutamine-tRNA ligase
Probab=98.97 E-value=3.9e-09 Score=120.87 Aligned_cols=53 Identities=9% Similarity=0.010 Sum_probs=39.6
Q ss_pred cCCCeEEEEEeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEeeeeEEcCCCceeeeccCCc
Q 007251 392 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEV 455 (611)
Q Consensus 392 ~~~d~iIyV~g~dq~~hf~~l~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~dG~kmSkR~G~~ 455 (611)
.+.+|+| .|.+|..+-+...-+++++|+. .+.+.|. + .++.+|.+||||++..
T Consensus 455 egITHvL--Rg~E~~~~~~~y~wl~~aLg~~------~P~~~~f--~-rLn~~~t~LSKRkl~~ 507 (788)
T PLN02859 455 ENITHSL--CTLEFETRRASYYWLLDSLGLY------QPYVWEY--S-RLNVTNTVMSKRKLNR 507 (788)
T ss_pred cCCceEe--echhhhcCCHHHHHHHHHcCCC------CCcEEee--e-eECCCCCcccCcCchh
Confidence 4666665 7888877777666788999984 3566776 5 4578999999999754
No 96
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=98.95 E-value=1.3e-08 Score=117.66 Aligned_cols=58 Identities=26% Similarity=0.375 Sum_probs=39.5
Q ss_pred CHHHHHHHHHHHHHcCCCCCCccCCCceEEEEecCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCeEEE
Q 007251 158 SKNWMAKNIQKMLVDGIETWAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLR 226 (611)
Q Consensus 158 ~~~~~~~~~~~~l~~~~~~~~~~~~~~kV~Ve~~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~V~r 226 (611)
+..|+...+.+-+..|. .++|+. =-.|+|||+|||||+|++++-..+||- +.|-=+.|
T Consensus 12 ~~~f~~~~~~~~l~~g~--------~~~v~t-RFaPsPtG~lHiGhar~alln~~~A~~--~~G~~~LR 69 (771)
T PRK14703 12 SPNFITEIIEEDLEAGR--------YPRVVT-RFPPEPNGYLHIGHAKSILLNFGIARD--YGGRCHLR 69 (771)
T ss_pred chhHHHHHHHHHHhcCC--------CCceEE-EeCcCCCCcccHHHHHHHHHHHHHHHH--hCCEEEEE
Confidence 34566666665554332 224554 557999999999999999999999985 34543333
No 97
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=98.77 E-value=3.5e-08 Score=109.73 Aligned_cols=40 Identities=25% Similarity=0.222 Sum_probs=31.0
Q ss_pred ceEEEEecCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCeEEE
Q 007251 184 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLR 226 (611)
Q Consensus 184 ~kV~Ve~~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~V~r 226 (611)
++|++ =-.|+|||+|||||+|++++-..+||-. -|-=+.|
T Consensus 50 gkv~t-RFaPsPtG~LHiGharaalln~~~Ar~~--gG~~iLR 89 (574)
T PTZ00437 50 GKPYF-RFPPEPNGFLHIGHAKSMNLNFGSARAH--GGKCYLR 89 (574)
T ss_pred CcEEE-EeCCCCCCcccHHHHHHHHHHHHHHHHh--CCEEEEE
Confidence 45665 4579999999999999999999999853 4543334
No 98
>PLN02959 aminoacyl-tRNA ligase
Probab=98.67 E-value=2e-07 Score=112.97 Aligned_cols=151 Identities=11% Similarity=0.093 Sum_probs=95.4
Q ss_pred EEEEeCCccc-cHHHHH-HHHHHcCCCCCCCCCCCcEEEEeeeeEEcCCCceeeeccCCcccHHHHHHHHHHHHHHHHHH
Q 007251 398 IYVTDVGQQL-HFDMVF-SAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIE 475 (611)
Q Consensus 398 IyV~g~dq~~-hf~~l~-~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~dG~kmSkR~G~~v~l~dLldea~~~a~~~~~~ 475 (611)
+++.|.||.. ||.... ......|- .+|...+.. .|+|+ .+|+|||||+||+|++.|++++
T Consensus 674 l~~sG~Dii~~wl~~~l~~~~al~~~----~P~p~~v~v--~G~V~-~~G~KMSKSkGNvI~p~diI~k----------- 735 (1084)
T PLN02959 674 LRVSGKDLIQNHLTFAIYNHTAIWAE----EHWPRGFRC--NGHLM-LNSEKMSKSTGNFLTLRQAIEE----------- 735 (1084)
T ss_pred EEEecccHHHHHHHHHHHHHHHhcCC----CCCCceEEE--ccEEe-cCCcCccccCCCcCCHHHHHHH-----------
Confidence 5667777643 443221 11112232 245433433 37787 7899999999999999999998
Q ss_pred hcCCCCCCHHHHHHHHhhcCcchhhhhhccCC-CCCcccccccccccccCChHHHHHHHHHHHHHHHH---HhCCChhhh
Q 007251 476 RGKDKEWTEEELEQTAEAVGYGAAKYFDLKNN-RLTNYTFSFDQMLNDKGNTAVYLLYAHARICSIIR---KSGKDIEEL 551 (611)
Q Consensus 476 r~~~~~~~~~e~~~~a~~vg~~avRy~~L~~~-~~~~~~Fd~d~~~~~~gnt~~ylqYa~aRi~SIlr---Ka~~~~~~~ 551 (611)
+|.|++||++++.. ...|.+|+++.+.. +. .|+.+.++ ..-......
T Consensus 736 ------------------yGADalRl~la~~~~~~~D~nF~~k~~n~-----~~------~~l~n~~~~~~~~~~~~~~~ 786 (1084)
T PLN02959 736 ------------------FSADATRFALADAGDGVDDANFVFETANA-----AI------LRLTKEIAWMEEVLAAESSL 786 (1084)
T ss_pred ------------------hCchHHHHHHhhcCCccCCCCccHHHHHH-----HH------HHHHHHHHHHHHhhhhhccc
Confidence 79999999999874 45788998775432 11 12222211 100000000
Q ss_pred hhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH-HHHH
Q 007251 552 KKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYL-YNLS 598 (611)
Q Consensus 552 ~~~~~~~l~~~~e~~L~~~l~~fp~~v~~a~~~~~P~~l~~yL-~~La 598 (611)
. ....+ ...+++++..|......+.+++++++.+.++..+ |+|-
T Consensus 787 ~--~~~~~-~~~D~wils~l~~~i~~v~~a~e~y~f~~A~~~~~Yel~ 831 (1084)
T PLN02959 787 R--TGPPS-TYADRVFENEINIAIAETEKNYEAMMFREALKSGFYDLQ 831 (1084)
T ss_pred C--CcccC-CHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 0 00112 4567889999999999999999999999988863 4343
No 99
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=98.63 E-value=3.3e-07 Score=111.31 Aligned_cols=137 Identities=22% Similarity=0.148 Sum_probs=99.3
Q ss_pred CceEEEEecCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCccccchHHHH
Q 007251 183 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 262 (611)
Q Consensus 183 ~~kV~Ve~~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l 262 (611)
+++.++.-.-||+||.+||||+++.++.|+++|..+..||+|.+..-.+..|..+...+.. ..+-. ..+.|.
T Consensus 101 ~~~Fv~~~gPPyanG~lHiGHal~~tikDii~Ry~rm~G~~V~~~~GwD~hGlPiE~~vEk---~lg~~---~k~~i~-- 172 (1205)
T PTZ00427 101 KKAYIFYDGPPFATGLPHYGHLLAGIIKDCVTRYFYQCGFSVERKFGWDCHGLPIEYEIEK---ENNIN---KKEDIL-- 172 (1205)
T ss_pred CCcEEEecCCCCCCCCcchhHHHHHHHHHHHHHHHHcCCCeeccCCccCCCCcHHHHHHHH---HhCCC---cccchh--
Confidence 4568888899999999999999999999999999999999999999888888777644321 11100 001111
Q ss_pred HHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHhcCCeeeecc-----cccccCcHHH
Q 007251 263 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKG-----ESFYNPYIPG 337 (611)
Q Consensus 263 ~~~y~~~~~~~~~d~~~~~~a~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~LgV~f~~~~-----Es~y~~~v~~ 337 (611)
+ -|-++..+..++++..+...+++.+++||+..||.. +..|...+..
T Consensus 173 ------------------~----------~g~~~f~e~c~~~~~~~~~~~~~~~~rlG~~iDw~~~y~T~d~~~~~~v~~ 224 (1205)
T PTZ00427 173 ------------------K----------MGIDVYNEKCRGIVLKYSNEWVKTVERIGRWIDFKNDYKTMDKTFMESVWW 224 (1205)
T ss_pred ------------------h----------cCHHHHHHHHHHHHHHHHHHHHHHHHHhCcEEecCCCcCcCCHHHHHHHHH
Confidence 0 011223344556677778889999999998877643 2345567999
Q ss_pred HHHHHHhCCCceeecccE
Q 007251 338 VIDELSKQGLVEESQGAR 355 (611)
Q Consensus 338 vi~~L~~~G~~~e~dGa~ 355 (611)
++.+|.++|++|+..--+
T Consensus 225 ~f~~L~ekGlIYr~~k~V 242 (1205)
T PTZ00427 225 VFSELYKNNYVYKSFKVM 242 (1205)
T ss_pred HHHHHHHCCCEEecceee
Confidence 999999999999855433
No 100
>PLN02959 aminoacyl-tRNA ligase
Probab=98.46 E-value=1.1e-06 Score=106.47 Aligned_cols=167 Identities=14% Similarity=0.144 Sum_probs=104.2
Q ss_pred CceEEEEecCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHH---hhCCCCCccc--cc
Q 007251 183 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLF---EKFPNSEDAN--ET 257 (611)
Q Consensus 183 ~~kV~Ve~~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~G~Q~~~l~~~~~---~~~~~~~~~~--~~ 257 (611)
..+..|.+.=|++||+|||||++|.++.|+++|..+..||+|.+..-....|..+...+..+. +.++.....+ +.
T Consensus 44 ~~kf~i~~ppPY~NG~lHiGHa~t~t~~D~i~Rykrm~G~~vlfp~G~d~tGlPIe~~aek~~~ei~~~g~~~~~~~~~~ 123 (1084)
T PLN02959 44 GEKFFGNFPYPYMNGLLHLGHAFSLSKLEFAAAYHRLRGANVLLPFAFHCTGMPIKASADKLAREIQQYGNPPVFPEEDE 123 (1084)
T ss_pred CCcEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCccCCCCCcCCCCccHHHHHHHHHHHHHHcCCCcccccccc
Confidence 357889999999999999999999999999999999999999999999999999987765543 2233210000 00
Q ss_pred hHHHHHHHHHHH--hcccCCChHHHHHHHHHHHHHcc-----------CCh-HHHHHH---HHHHHHHHHHHHHHHHhcC
Q 007251 258 AIGELQEFYRRS--KNRFDSDPAFKERAQQAVVRLQS-----------GEP-KYHEAW---AQICEISRKEFDKVYKRLR 320 (611)
Q Consensus 258 ~i~~l~~~y~~~--~~~~~~d~~~~~~a~~~~~~le~-----------gd~-e~~~~w---~~~~~~~~~~~~~~~~~Lg 320 (611)
...+.... ... ...-....+|.+.+++...+.-. |-| +.+..+ ...++.+-..+++++++||
T Consensus 124 ~~~~~~~~-~~~~~~~~~~~~~~f~~~~~k~~~k~~~~~~~~~~~~~~~~~~~~i~~f~dp~~~~~yF~~~~~~~~k~lG 202 (1084)
T PLN02959 124 DEAAAVAA-AKAEAEAAAAPPDKFKGKKSKAVAKSGTQKYQWEIMRSFGLPDSEIAKFQDPYHWLSYFPPLAKEDLKAFG 202 (1084)
T ss_pred cccccccc-cccccccccccHHHHHHHHHHHHHHhCCchHHHHHHhhcCCchhhhhhccCHHHHHHhccHHHHHHHHHhC
Confidence 00000000 000 00000112355555544433110 101 111111 1123444467788999999
Q ss_pred Ceeeeccc-------ccccCcHHHHHHHHHhCCCcee
Q 007251 321 VDLEEKGE-------SFYNPYIPGVIDELSKQGLVEE 350 (611)
Q Consensus 321 V~f~~~~E-------s~y~~~v~~vi~~L~~~G~~~e 350 (611)
+..||..+ ..|...+...+.+|.++|++|.
T Consensus 203 ~~iDW~r~f~T~d~np~y~~~v~wqf~~L~ekG~I~~ 239 (1084)
T PLN02959 203 LGCDWRRSFITTDVNPYYDAFVRWQFRKLKKKGKIVK 239 (1084)
T ss_pred ceEeCCCCcCCCCCChhHHHHHHHHHHHHHHCCCEEe
Confidence 99998643 2355679999999999999996
No 101
>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.24 E-value=7.8e-07 Score=98.66 Aligned_cols=114 Identities=22% Similarity=0.357 Sum_probs=78.3
Q ss_pred CceEEEEecCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCccccchHHHH
Q 007251 183 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 262 (611)
Q Consensus 183 ~~kV~Ve~~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l 262 (611)
++|.++ --=|.|.|.|||||.|-..|-|+|||+.|.+||+|+.-.-.+-+|- |. +.
T Consensus 57 k~KYiL-sMFPYPSG~LHiGHvRVYTIsD~laRf~rm~GynVihPMGWDaFGL-------------PA---------EN- 112 (876)
T KOG0435|consen 57 KKKYIL-SMFPYPSGALHIGHVRVYTISDILARFYRMKGYNVIHPMGWDAFGL-------------PA---------EN- 112 (876)
T ss_pred CCceEE-EecCCCCCcccccceEEEEehHHHHHHHHhcCceeecCCcccccCC-------------ch---------hh-
Confidence 444544 3459999999999999999999999999999999987554443332 11 00
Q ss_pred HHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeccc-----ccccCcHHH
Q 007251 263 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-----SFYNPYIPG 337 (611)
Q Consensus 263 ~~~y~~~~~~~~~d~~~~~~a~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~LgV~f~~~~E-----s~y~~~v~~ 337 (611)
.+.++ ..+ | +.|. ..-.+.+++.+++||+.|||..| ..|-...+-
T Consensus 113 -----AAier-gv~------------------P---~sWT---~~NI~~Mk~Ql~~lg~~FDWdrEiSTC~PdYYKWTQw 162 (876)
T KOG0435|consen 113 -----AAIER-GVH------------------P---ASWT---INNIAKMKQQLKSLGISFDWDREISTCEPDYYKWTQW 162 (876)
T ss_pred -----HHHhc-CCC------------------c---hhhh---HHHHHHHHHHHHHcCcccccccccccCCcchhHHHHH
Confidence 00011 011 1 2231 12235678899999999999755 345566788
Q ss_pred HHHHHHhCCCcee
Q 007251 338 VIDELSKQGLVEE 350 (611)
Q Consensus 338 vi~~L~~~G~~~e 350 (611)
++=.|-++|++|.
T Consensus 163 iFlkLfe~GLAYq 175 (876)
T KOG0435|consen 163 IFLKLFEKGLAYQ 175 (876)
T ss_pred HHHHHHHhhhhhc
Confidence 9999999999995
No 102
>KOG0433 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.17 E-value=9.6e-06 Score=90.99 Aligned_cols=178 Identities=14% Similarity=0.121 Sum_probs=105.3
Q ss_pred CCeEE--EEEeCCccc-cHHHHHHHH-HHcCCCCCCCCCCCcEEEEeeeeEEcCCCceeeeccCCcccHHHHHHHHHHHH
Q 007251 394 AEWII--YVTDVGQQL-HFDMVFSAA-KRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRS 469 (611)
Q Consensus 394 ~d~iI--yV~g~dq~~-hf~~l~~~~-~~lG~~~~~~~~~~~~~Hv~~g~V~~~dG~kmSkR~G~~v~l~dLldea~~~a 469 (611)
.+++. |.-|.||+. -|+-..... ..-+.. |....+.| |+++++.|.|||||.||+|+++.+++--
T Consensus 563 ~~~~aDv~LEG~DQ~rGWFQSsLLTsvA~q~kA----PYk~vivH---GFtlDE~G~KMSKSlGNVidP~~v~~G~---- 631 (937)
T KOG0433|consen 563 REHVADVYLEGVDQFRGWFQSSLLTSVAVQNKA----PYKKVIVH---GFTLDENGNKMSKSLGNVVDPTMVTDGS---- 631 (937)
T ss_pred CCcceeeEEecchhcchHHHHHHHHHHHHhccC----Cchheeee---eeEecCCccchhhcccCcCCHHHHhCCc----
Confidence 44444 456999865 666432211 122332 23344555 8899999999999999999999998851
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHhhcCcchhhhhhccCCCCCcccccccccccccCChHHHHHHHHHHHHHHHHHhCCChh
Q 007251 470 KAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHARICSIIRKSGKDIE 549 (611)
Q Consensus 470 ~~~~~~r~~~~~~~~~e~~~~a~~vg~~avRy~~L~~~~~~~~~Fd~d~~~~~~gnt~~ylqYa~aRi~SIlrKa~~~~~ 549 (611)
++.+ .+|+|.+||+........+......-+.+.. +..--+..+..=+.+-+...+....
T Consensus 632 -------~k~p------------ayGaD~LR~WVA~~~~t~d~~iGp~il~qv~-e~l~K~R~T~RfllGnl~d~~~~~~ 691 (937)
T KOG0433|consen 632 -------LKQP------------AYGADGLRFWVAGSENTGESKIGPKILDQVD-EKLIKFRNTFRFLLGNLQDFDGKQV 691 (937)
T ss_pred -------ccCC------------CccccceeeeeecccccCceecCHHHHHHHH-HHHHHHHhHHHHHhhcccccCCccc
Confidence 2222 1799999999986666666655554433211 1000000000000011111110000
Q ss_pred hhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH-HHHHHhchhh
Q 007251 550 ELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYN-LSEYFTRFYS 606 (611)
Q Consensus 550 ~~~~~~~~~l~~~~e~~L~~~l~~fp~~v~~a~~~~~P~~l~~yL~~-La~~fn~fY~ 606 (611)
.++- ..+ ---++-++.+|..+...+++.+++|+..+++.-|.. +...++.||-
T Consensus 692 ~~p~---~dl-~~iDq~~L~ql~~~~~~i~e~Y~~Y~f~kVv~~lq~F~~~~lSa~Yf 745 (937)
T KOG0433|consen 692 KFPL---KDL-RYIDQYMLQQLDAIVKRIIELYNDYKFRKVVNDLQQFLQRNLSAFYF 745 (937)
T ss_pred cccc---hhh-hhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhHHHH
Confidence 0110 001 112566888999999999999999999999998877 6788899884
No 103
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=98.08 E-value=9.5e-06 Score=97.12 Aligned_cols=123 Identities=24% Similarity=0.335 Sum_probs=84.9
Q ss_pred CcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCccccchHHHHHHHHHHHhcccCCChH
Q 007251 199 MHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPA 278 (611)
Q Consensus 199 lHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~~~~~~~d~~ 278 (611)
|||||+|+.++.|+++|..+..||+|.+..-.+-.|..+...+..+.. + +.+.. +.+++ .+...+
T Consensus 1 lHiGH~~~~t~~D~i~Ry~rm~G~~Vl~~~G~d~~GlPie~~ae~~~~--~------~~~~~---~~~~~---~~gi~~- 65 (897)
T PRK12300 1 LHVGHGRTYTIGDVIARYKRMRGYNVLFPMAFHVTGTPILGIAERIAR--G------DPETI---ELYKS---LYGIPE- 65 (897)
T ss_pred CccchhHHHHHHHHHHHHHHcCCCcCCCCCCCCCCCcCHHHHHHHhhc--c------chhHH---HHHHH---HcCCCH-
Confidence 799999999999999999999999999998888888877655432211 0 11110 11111 111110
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeccc-----ccccCcHHHHHHHHHhCCCcee
Q 007251 279 FKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-----SFYNPYIPGVIDELSKQGLVEE 350 (611)
Q Consensus 279 ~~~~a~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~LgV~f~~~~E-----s~y~~~v~~vi~~L~~~G~~~e 350 (611)
+.+.++ +++ +.+++.+...+++.+++||+.+||..+ ..|...+..++.+|.++|++|.
T Consensus 66 ------~~i~~f--~~~------~~~~~~~~~~~~~~~~~lG~~~DW~r~y~T~dp~y~~~v~w~F~~L~ekGliyr 128 (897)
T PRK12300 66 ------EELEKF--KDP------EYIVEYFSEEAKEDMKRIGYSIDWRREFTTTDPEYSKFIEWQFRKLKEKGLIVK 128 (897)
T ss_pred ------HHHHHh--cCH------HHHHHHhHHHHHHHHHHhCcEEeCCCCeECCChhHHHHHHHHHHHHHHCCCEec
Confidence 111111 122 356778888999999999999998643 3556779999999999999996
No 104
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.49 E-value=0.00014 Score=85.66 Aligned_cols=130 Identities=21% Similarity=0.252 Sum_probs=86.3
Q ss_pred ceEEEEecCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCccccchHHHHH
Q 007251 184 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQ 263 (611)
Q Consensus 184 ~kV~Ve~~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~ 263 (611)
++.+.-=.-|-.||.+||||+-|-||=|++.|.....||+|.++.--+-.|-.|..-+. ++++-
T Consensus 49 ~~FvfhDGPPyANG~iHiGHalnKilKDiI~Ry~~m~G~~v~~~pGWDcHGLPIE~~ve---k~lg~------------- 112 (933)
T COG0060 49 PKFVLHDGPPYANGNIHIGHALNKILKDIIVRYKTMQGYDVPYVPGWDCHGLPIELKVE---KKLGI------------- 112 (933)
T ss_pred CcEEEeCCCCCCCCCcchhhhHHHhhhhhhhhhhcccCCcCCCCCCCcCCCchHHHHHH---HHhCC-------------
Confidence 34445456788999999999999999999999999999999987765555544442110 11110
Q ss_pred HHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHhcCCeeeecc-----cccccCcHHHH
Q 007251 264 EFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKG-----ESFYNPYIPGV 338 (611)
Q Consensus 264 ~~y~~~~~~~~~d~~~~~~a~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~LgV~f~~~~-----Es~y~~~v~~v 338 (611)
.++..++ -|-.+.++.+++++....+..++.++||||--||.. ...|...+-.+
T Consensus 113 -----~k~~i~~----------------~~~~efr~~Cr~~a~~~v~~q~~~f~RLGv~~Dw~npY~Tmd~~ye~~~~~~ 171 (933)
T COG0060 113 -----GKKDIES----------------FGVEEFREKCREFALEQVDEQKEQFKRLGVWGDWENPYKTMDPSYEESVWWA 171 (933)
T ss_pred -----Ccchhhh----------------cCHHHHHHHHHHHHHHHHHHHHHHHHhheEeeccCCCeecCCHHHHHHHHHH
Confidence 0000000 011233445556666677888889999999987732 12233456778
Q ss_pred HHHHHhCCCcee
Q 007251 339 IDELSKQGLVEE 350 (611)
Q Consensus 339 i~~L~~~G~~~e 350 (611)
+.++.++|++|+
T Consensus 172 f~~~~~kGllyr 183 (933)
T COG0060 172 FKELYEKGLLYR 183 (933)
T ss_pred HHHHHHCCCeec
Confidence 899999999996
No 105
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=97.34 E-value=0.0011 Score=72.71 Aligned_cols=61 Identities=13% Similarity=0.096 Sum_probs=45.7
Q ss_pred ccCCCeEEEEEeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEeeeeEEcCCCceeeeccCCcccHHHH
Q 007251 391 EEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDL 461 (611)
Q Consensus 391 ~~~~d~iIyV~g~dq~~hf~~l~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~dG~kmSkR~G~~v~l~dL 461 (611)
..+++ +=+.|.||..|+..-..+++.+|... + .++..-++.+.+|.|||||.||.|.|+|=
T Consensus 184 ~~~~~--iq~gG~DQ~~ni~~grdl~~r~~~~~------~--~~lt~PlL~g~dG~KMsKS~~naI~L~d~ 244 (410)
T PRK13354 184 KEDVD--LQIGGTDQWGNILMGRDLQRKLEGEE------Q--FGLTMPLLEGADGTKMGKSAGGAIWLDPE 244 (410)
T ss_pred cCCCC--EEEecHHHHHHHHHHHHHHHHhCCCC------c--eEeccCCccCCCCCccCCCCCCceeccCC
Confidence 34665 33589999999999989999998731 1 22223457788999999999999988764
No 106
>KOG0434 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.27 E-value=0.002 Score=72.35 Aligned_cols=169 Identities=17% Similarity=0.206 Sum_probs=111.5
Q ss_pred cCCCeEEEEEeCCccc-cHHHHHHHH-HHcCCCCCCCCCCCcEEEEeeeeEEcCCCceeeeccCCcccHHHHHHHHHHHH
Q 007251 392 EKAEWIIYVTDVGQQL-HFDMVFSAA-KRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRS 469 (611)
Q Consensus 392 ~~~d~iIyV~g~dq~~-hf~~l~~~~-~~lG~~~~~~~~~~~~~Hv~~g~V~~~dG~kmSkR~G~~v~l~dLldea~~~a 469 (611)
+.+|.|- -|-||.. -|-.+.-+. ..+|-+| + . .-+..|+|+-+||+|||||..|+-.+..++++
T Consensus 553 fPadFIa--EGlDQTRGWFYTL~VlsT~LF~kpp----f-k--NvIvnGlVLAeDG~KMSKrlkNYPdP~~iink----- 618 (1070)
T KOG0434|consen 553 FPADFIA--EGLDQTRGWFYTLLVLSTALFGKPP----F-K--NVIVNGLVLAEDGKKMSKRLKNYPDPSLIINK----- 618 (1070)
T ss_pred CchHhhh--hccccccchhhHHHHHHHHHcCCCc----c-h--heeEeeeEEecccHHHhhhhhcCCCHHHHHHh-----
Confidence 4455432 4666643 454443322 3446532 2 2 22345999999999999999999999999998
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHhhcCcchhhhhhccCC--CCCcccccccccccccC-------Ch-HHHHHHHHHHHHH
Q 007251 470 KAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNN--RLTNYTFSFDQMLNDKG-------NT-AVYLLYAHARICS 539 (611)
Q Consensus 470 ~~~~~~r~~~~~~~~~e~~~~a~~vg~~avRy~~L~~~--~~~~~~Fd~d~~~~~~g-------nt-~~ylqYa~aRi~S 539 (611)
+|.||+|.+++... +..++.|.-+.++..-. |. .+|+|.+. |
T Consensus 619 ------------------------YGADalRlYLInSPVvraE~LkFkeeGVrevvk~v~lPW~NsyrF~~qn~~-~--- 670 (1070)
T KOG0434|consen 619 ------------------------YGADALRLYLINSPVVRAENLKFKEEGVREVVKDVLLPWYNSYRFLVQNAA-L--- 670 (1070)
T ss_pred ------------------------hcchheeeeeecCccccccccccchhhHHHHHHhhhhhhhHHHHHHHHHHH-H---
Confidence 79999999999885 46789999888776432 22 34566432 1
Q ss_pred HHHHhCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhchh
Q 007251 540 IIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFY 605 (611)
Q Consensus 540 IlrKa~~~~~~~~~~~~~~l~~~~e~~L~~~l~~fp~~v~~a~~~~~P~~l~~yL~~La~~fn~fY 605 (611)
+.|-. +..-.. .+...-.+--+++++.....+..-+++-|++|+...+.--|..+.+.+.+||
T Consensus 671 -~~~~~-g~~f~~-~~~~~S~NvmDrWI~a~~qslv~fv~~eM~~YrLytVvp~llkfiD~LTNwY 733 (1070)
T KOG0434|consen 671 -LKKET-GKDFVF-DDSVTSSNVMDRWILASTQSLVGFVREEMDQYRLYTVVPRLLKFIDELTNWY 733 (1070)
T ss_pred -hcccc-CCcccc-ccccccchhHHHHHHHHHHHHHHHHHHHHHheehhhhHHHHHHHHHHhhhhh
Confidence 23321 110000 0111111334678999999999999999999998888888888888888877
No 107
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=97.23 E-value=0.0013 Score=72.00 Aligned_cols=60 Identities=17% Similarity=0.105 Sum_probs=44.9
Q ss_pred ccCCCeEEEEEeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEeeeeEEcCCCceeeeccCCcccHHH
Q 007251 391 EEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVD 460 (611)
Q Consensus 391 ~~~~d~iIyV~g~dq~~hf~~l~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~dG~kmSkR~G~~v~l~d 460 (611)
.++++ |=+.|.||..|+..-..+++.+|..+ ..++..-++.+.+|+|||||.||.|.|+|
T Consensus 186 ~~~~~--i~~gG~DQ~~ni~~grdla~r~~~~~--------~~~l~~plL~~~~G~KMsKS~~naI~L~d 245 (408)
T PRK05912 186 RYGCD--LQLGGSDQWGNILSGRDLQRRYGGKP--------QFGLTMPLLTGLDGKKMGKSEGNAVWLDE 245 (408)
T ss_pred cCCCC--EEeccHHHHHHHHHHHHHHHHhCCCC--------eEEEecCCcCCCCCCcccCCCCCceeCCC
Confidence 34555 33589999999998888899887531 12222345778899999999999998886
No 108
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=97.10 E-value=0.0025 Score=67.97 Aligned_cols=64 Identities=17% Similarity=0.213 Sum_probs=46.4
Q ss_pred cCCCeEEEEEeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEeeeeEEcCCCc--eeeecc-CCcccHHHHHHHH
Q 007251 392 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGK--RLRTRF-SEVVRLVDLLDEA 465 (611)
Q Consensus 392 ~~~d~iIyV~g~dq~~hf~~l~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~dG~--kmSkR~-G~~v~l~dLldea 465 (611)
.++|.+ .+|.||..|+..-..+++.+|+. .+...+. -+|.+-+|. |||||. |+.|.|.|=-+++
T Consensus 167 ~~ad~v--pvG~DQ~~h~~l~Rdia~~~n~~------~p~~l~~--~~l~~L~g~~~KMSKS~p~~~I~L~D~~~~I 233 (329)
T PRK08560 167 LDVDIA--VGGMDQRKIHMLAREVLPKLGYK------KPVCIHT--PLLTGLDGGGIKMSKSKPGSAIFVHDSPEEI 233 (329)
T ss_pred hCCCEE--EechhHHHHHHHHHHhhHhcCCC------CceEEEc--CccCCCCCCCCCCcCCCCCCeecccCCHHHH
Confidence 356754 48999999999888999998873 1223333 456666776 999999 9999887644443
No 109
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=97.07 E-value=0.0049 Score=65.71 Aligned_cols=67 Identities=18% Similarity=0.231 Sum_probs=42.3
Q ss_pred cCCCeEEEEEeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEee-eeEEcCCCceeeeccCC-cccHHH
Q 007251 392 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGF-GLVLGEDGKRLRTRFSE-VVRLVD 460 (611)
Q Consensus 392 ~~~d~iIyV~g~dq~~hf~~l~~~~~~lG~~~~~~~~~~~~~Hv~~-g~V~~~dG~kmSkR~G~-~v~l~d 460 (611)
+++|.+ .+|.||..|+.--..+++.+|..-.+.-..+...|..+ --+.+.+|+|||||.++ .|.|.|
T Consensus 138 ~~~d~v--pvG~DQ~~h~elaRdia~r~n~~~~~~f~~P~~l~~~~~~~l~gl~~~KMSKS~~~s~I~L~D 206 (328)
T TIGR00233 138 YQADLV--PVGIDQDQHLELTRDLAERFNKKFKNFFPKPESLISKFFPRLMGLSGKKMSKSDPNSAIFLTD 206 (328)
T ss_pred cCCCee--ecccccHHHHHHHHHHHHHhhhhcCcccCCChhhhccccCCCCCCCCCcCCCCCCCCeEeecC
Confidence 356644 48999999999999999998821000000122333222 12455667899999997 887765
No 110
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=97.04 E-value=0.0064 Score=66.05 Aligned_cols=60 Identities=12% Similarity=0.073 Sum_probs=42.2
Q ss_pred cCCCeEEEEEeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEeeeeEEcC-CC-ceeeeccCC-cccHHH
Q 007251 392 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGE-DG-KRLRTRFSE-VVRLVD 460 (611)
Q Consensus 392 ~~~d~iIyV~g~dq~~hf~~l~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~-dG-~kmSkR~G~-~v~l~d 460 (611)
.++|.+ .+|.||..|+.-...++..+|+.+ .+.+.|. .+|.+- || +|||||.+| .|.+.|
T Consensus 209 l~adiv--pvG~DQ~~~~~LaRdia~~~~~~~-----~~~~~~~--~~lpgL~dg~~KMSKS~~ns~I~L~D 271 (383)
T PTZ00126 209 LKADIC--QLGMDQRKVNMLAREYCDKKKIKK-----KPIILSH--HMLPGLLEGQEKMSKSDPNSAIFMED 271 (383)
T ss_pred cCCCEE--EeCccHHHHHHHHHHHHHHhCCCC-----Cceeecc--cccccCCCCCCCCCcCCCCCeecCCC
Confidence 456754 489999999998888899999632 1223344 446555 45 699999987 587765
No 111
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=97.02 E-value=0.0062 Score=65.85 Aligned_cols=59 Identities=17% Similarity=0.320 Sum_probs=43.2
Q ss_pred EEEEeCCccccHHHHHHHHHHc----CCCCCCCCCCCcEEEEeeeeEEcCCCceeeecc-CCcccHHHHHHH
Q 007251 398 IYVTDVGQQLHFDMVFSAAKRA----GWLSADDSTYPKASHVGFGLVLGEDGKRLRTRF-SEVVRLVDLLDE 464 (611)
Q Consensus 398 IyV~g~dq~~hf~~l~~~~~~l----G~~~~~~~~~~~~~Hv~~g~V~~~dG~kmSkR~-G~~v~l~dLlde 464 (611)
+-.+|.||..|+.....++..+ |+.. +...|.. ++.+-+|.|||||. ++.|.|.|=-++
T Consensus 206 lvPvG~DQ~~h~~ltRdiA~r~n~~~gf~~------P~~l~~~--~lpgL~G~KMSkS~~~s~I~L~D~p~~ 269 (368)
T PRK12285 206 LVPVGIDQDPHIRLTRDIAERLHGGYGFIK------PSSTYHK--FMPGLTGGKMSSSKPESAIYLTDDPET 269 (368)
T ss_pred EEEeccchHHHHHHHHHHHHHHhhhcCCCC------chhHhhh--cccCCCCCcCCCCCCCCeeeccCCHHH
Confidence 4468999999999999999988 8742 2333432 46677888999998 678887764333
No 112
>PLN02486 aminoacyl-tRNA ligase
Probab=96.92 E-value=0.0089 Score=64.89 Aligned_cols=57 Identities=19% Similarity=0.261 Sum_probs=39.9
Q ss_pred EEeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEeeeeEEcCCC--ceeeeccCC-cccHHHHHHH
Q 007251 400 VTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDG--KRLRTRFSE-VVRLVDLLDE 464 (611)
Q Consensus 400 V~g~dq~~hf~~l~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~dG--~kmSkR~G~-~v~l~dLlde 464 (611)
=+|.||..|+.....+++.+|+. .+...|..+ +-+-+| .|||||.+| .|.|.|=-++
T Consensus 224 PvG~DQd~~~~ltRdia~r~~~~------kp~~~~~~~--lp~L~g~~~KMSkS~~nsaI~L~D~p~~ 283 (383)
T PLN02486 224 PCAIDQDPYFRMTRDVAPRLGYY------KPALIESRF--FPALQGESGKMSASDPNSAIYVTDTPKE 283 (383)
T ss_pred ecccchHHHHHHHHHHHHHhCCC------Ccceecccc--ccCCCCCCCcCcCcCCCCeeeccCCHHH
Confidence 36999999999999999999873 123445333 333333 599999987 6888773333
No 113
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.09 E-value=0.0097 Score=64.74 Aligned_cols=51 Identities=18% Similarity=0.077 Sum_probs=36.9
Q ss_pred EEEEeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEeeeeEEcCCCceeeeccCCcc
Q 007251 398 IYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVV 456 (611)
Q Consensus 398 IyV~g~dq~~hf~~l~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~dG~kmSkR~G~~v 456 (611)
+=+-|.||..-+-.-...++.+|+. .+...|++ ++.+.+|.||||+.|+.+
T Consensus 183 lq~GG~DQ~~ni~~grdl~rr~g~~------~~~~lt~P--LL~~ldG~KmgKs~~~a~ 233 (401)
T COG0162 183 LQLGGSDQWGNILAGRDLIRRLGQK------KVVGLTTP--LLTGLDGKKMGKSEGGAV 233 (401)
T ss_pred hhcCChHHHHHHHHHHHHHHHhCCC------CeEEEEec--cccCCCCCcccccCCCce
Confidence 3456888876655555777888883 24456664 488899999999999843
No 114
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=95.99 E-value=0.04 Score=59.89 Aligned_cols=55 Identities=13% Similarity=-0.006 Sum_probs=40.0
Q ss_pred EEEEeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEeeeeEEcCCCceeeeccCCcccHHH
Q 007251 398 IYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVD 460 (611)
Q Consensus 398 IyV~g~dq~~hf~~l~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~dG~kmSkR~G~~v~l~d 460 (611)
+-+.|.||..|+.....+++..+... . .-+..-++.+.+|.|||||.||.|.+++
T Consensus 180 i~~gG~DQ~~ni~~g~dLar~~~~~~------~--~~~t~pLl~~~dg~KmgKS~~~~i~l~~ 234 (377)
T TIGR00234 180 LQIGGSDQWGNIRKGRDLIRRNLPSL------G--FGLTVPLLTPADGEKMGKSGGGAVSLDE 234 (377)
T ss_pred eeEecchhHHHHHHHHHHHHHhcCCC------c--eeeceeeecCCCCCCccCCCCCcccCCc
Confidence 55789999999999888888776421 1 1122234667789999999998887754
No 115
>KOG0433 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=95.61 E-value=0.076 Score=60.71 Aligned_cols=122 Identities=16% Similarity=0.136 Sum_probs=79.6
Q ss_pred CCCCCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCccccchHHHHHHHHHHHhcccC
Q 007251 195 IAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFD 274 (611)
Q Consensus 195 p~kplHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~~~~~~ 274 (611)
-+|.+|+||++|-|+-|.+-|++-..|..|..+.-.+=.| -+|.-+ +........-+
T Consensus 66 anG~lhlghalnkILkdIinr~~laqg~~alyvpGwDchG----------------------LPiEs~-kalssl~~~~~ 122 (937)
T KOG0433|consen 66 ANGNLHLGHALNKILKDIINRILLAQGKSALYVPGWDCHG----------------------LPIEST-KALSSLTESEG 122 (937)
T ss_pred cCCCccchHHHHHHHHHHHHHHHHhcCceeccCCCCCcCC----------------------CchHHH-HHhhhhhhccc
Confidence 6799999999999999999999999999887765444333 333211 11110000000
Q ss_pred CChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHhcCCeeeecccccc-------cCcHHHHHHHHHhCCC
Q 007251 275 SDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGESFY-------NPYIPGVIDELSKQGL 347 (611)
Q Consensus 275 ~d~~~~~~a~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~LgV~f~~~~Es~y-------~~~v~~vi~~L~~~G~ 347 (611)
+- -.-|+++.-+.+++...+..++.+.++||--||. .-| .-.--+++..|.++|+
T Consensus 123 ~~----------------s~leiR~~Ar~fA~~AIk~Q~e~F~r~gv~aDW~--n~Y~T~~~~ye~aQL~iF~~lyekgL 184 (937)
T KOG0433|consen 123 SR----------------TPLEIRAKARIFADEAIKKQMEAFRRWGVTADWE--NPYVTKSPSYEAAQLDIFAKLYEKGL 184 (937)
T ss_pred cC----------------CcHHHHHHHHHHHHHHHHHHHHHHHHheeeccCC--CceeecChHHHHHHHHHHHHHHhccc
Confidence 00 0113334445567777788889999999998884 444 2234578899999999
Q ss_pred ceeecccEEE
Q 007251 348 VEESQGARVI 357 (611)
Q Consensus 348 ~~e~dGa~~~ 357 (611)
+|.+.--+++
T Consensus 185 vyR~~KPVyW 194 (937)
T KOG0433|consen 185 VYRSFKPVYW 194 (937)
T ss_pred eeccCCccee
Confidence 9976555544
No 116
>KOG0434 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=95.50 E-value=0.039 Score=62.49 Aligned_cols=130 Identities=23% Similarity=0.318 Sum_probs=81.7
Q ss_pred eEEEEecCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCccccchHHHHHH
Q 007251 185 KAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQE 264 (611)
Q Consensus 185 kV~Ve~~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~ 264 (611)
+....=.-|=.||-.|-||+-...|-|++-|+.-..||.|.|.+-.+-.|..+.--+.
T Consensus 39 ~ftFyDGPPFATGlPHyGHiLa~TIKDiVtRya~~~G~hVeRRFGWD~HGlPVE~eID---------------------- 96 (1070)
T KOG0434|consen 39 KFTFYDGPPFATGLPHYGHILASTIKDIVTRYATQTGHHVERRFGWDTHGLPVEYEID---------------------- 96 (1070)
T ss_pred ceeeccCCccccCCCccchhhhhhHHHHHHHHhhccccceeeecccccCCCccceeec----------------------
Confidence 3444445677899999999999999999999999999999999977777754421110
Q ss_pred HHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHhcC--Ceeeeccccccc---CcHHHHH
Q 007251 265 FYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLR--VDLEEKGESFYN---PYIPGVI 339 (611)
Q Consensus 265 ~y~~~~~~~~~d~~~~~~a~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~Lg--V~f~~~~Es~y~---~~v~~vi 339 (611)
+.... ..++.+.+| |=..+-+.++.++-.+-.+-+++..||| |.|+.-..++|- +.+=.++
T Consensus 97 ------KkLgI------~g~~dV~km--GI~kYN~ECR~IVmrYssEWe~tv~RlGRWidF~ndYkTmyp~FMESvWwvF 162 (1070)
T KOG0434|consen 97 ------KKLGI------TGRDDVMKM--GIDKYNNECRKIVMRYSSEWEKTVERLGRWIDFDNDYKTLYPSFMESVWWVF 162 (1070)
T ss_pred ------hhcCC------CCHHHHHHH--hHHhHhHHHHHHHHHHHHHHHHHHHhhccceeccCCcceecHHHHHHHHHHH
Confidence 00000 000111111 1112223344555555667778899998 566321134443 2344689
Q ss_pred HHHHhCCCcee
Q 007251 340 DELSKQGLVEE 350 (611)
Q Consensus 340 ~~L~~~G~~~e 350 (611)
++|-++|++|.
T Consensus 163 keL~~kglVYR 173 (1070)
T KOG0434|consen 163 KELHEKGLVYR 173 (1070)
T ss_pred HHHHhcCceec
Confidence 99999999985
No 117
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=95.44 E-value=0.087 Score=61.15 Aligned_cols=64 Identities=13% Similarity=0.064 Sum_probs=42.4
Q ss_pred cCCCeEEEEEeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEeeeeEEcCC-C-ceeeecc-CCcccHHHHHHH
Q 007251 392 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGED-G-KRLRTRF-SEVVRLVDLLDE 464 (611)
Q Consensus 392 ~~~d~iIyV~g~dq~~hf~~l~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~d-G-~kmSkR~-G~~v~l~dLlde 464 (611)
+++|.+ .+|.||..|+.-...++..+|..+ .+.+.|. .++.+-+ | .|||||. +|+|.+.|=-++
T Consensus 174 l~adiv--pvG~DQ~qh~eLaRdia~~~g~~~-----kpvil~~--~~LpGL~gg~~KMSKS~p~naI~L~Dspe~ 240 (682)
T PTZ00348 174 LKADIC--QLGLDQRKVNMLAREYCDLIGRKL-----KPVILSH--HMLAGLKQGQAKMSKSDPDSAIFMEDTEED 240 (682)
T ss_pred cCCCEE--EeCccHHHHHHHHHHHHHHhCCCC-----Cceeccc--ccCcCCCCCCCcCCCCCCCCeecccCCHHH
Confidence 356654 389999999988888888888532 1223343 3344443 3 5999999 689988763333
No 118
>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=94.94 E-value=0.16 Score=57.65 Aligned_cols=40 Identities=13% Similarity=0.154 Sum_probs=34.2
Q ss_pred eeeeccCCcccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhcCcchhhhhhccCCC-CCccccc
Q 007251 447 RLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNR-LTNYTFS 515 (611)
Q Consensus 447 kmSkR~G~~v~l~dLldea~~~a~~~~~~r~~~~~~~~~e~~~~a~~vg~~avRy~~L~~~~-~~~~~Fd 515 (611)
|||||++|+|.+.|++++ .|+|++|.+.|-..+ ..++..|
T Consensus 617 KMSKSK~NGVdP~~~v~~-----------------------------yG~D~tRl~ilf~ap~~~~~nW~ 657 (876)
T KOG0435|consen 617 KMSKSKHNGVDPADVVLE-----------------------------YGVDTTRLYILFAAPPRDPINWN 657 (876)
T ss_pred HhhhcccCCCCHHHHHHH-----------------------------hCchHHHHHHHhhCCcccccccc
Confidence 899999999999999999 699999999888765 5555544
No 119
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=94.44 E-value=0.13 Score=57.05 Aligned_cols=41 Identities=17% Similarity=-0.005 Sum_probs=31.9
Q ss_pred HHHHHHHHhcCCeeee-cccccccCcHHHHHHHHHhCCCcee
Q 007251 310 KEFDKVYKRLRVDLEE-KGESFYNPYIPGVIDELSKQGLVEE 350 (611)
Q Consensus 310 ~~~~~~~~~LgV~f~~-~~Es~y~~~v~~vi~~L~~~G~~~e 350 (611)
..+.+++..|||..+. ...|.|-+.+......|...|.+|.
T Consensus 253 ~~IleDl~~LgIkpd~~TyTSDyF~~i~dycv~likeGKAYv 294 (712)
T KOG1147|consen 253 DVILEDLSLLGIKPDRVTYTSDYFDEIMDYCVKLIKEGKAYV 294 (712)
T ss_pred HHHHHHHHHhCcCcceeeechhhHHHHHHHHHHHHhcCcccc
Confidence 4566689999999853 3467887778888888989998884
No 120
>KOG0437 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=94.39 E-value=0.2 Score=57.52 Aligned_cols=171 Identities=17% Similarity=0.208 Sum_probs=100.6
Q ss_pred CCceEEEEecCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHh---hCCCCCccccch
Q 007251 182 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFE---KFPNSEDANETA 258 (611)
Q Consensus 182 ~~~kV~Ve~~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~G~Q~~~l~~~~~~---~~~~~~~~~~~~ 258 (611)
...|..|-|.=|..+|.||+||+-|.-=-|.-+-.-|..|++|..-+-.-=.|..|.-.+..|.. .||.....+.+.
T Consensus 42 ~~~Kff~tfpyPYMNG~LHlGH~FslSK~eFa~~y~rL~Gk~vLfPfgFHCTGMPI~A~AdKLkrEie~fG~ppdf~~e~ 121 (1080)
T KOG0437|consen 42 SKPKFFVTFPYPYMNGRLHLGHAFSLSKVEFASGYERLQGKNVLFPFGFHCTGMPIKASADKLKREIELFGCPPDFPEEE 121 (1080)
T ss_pred ccCceeEeccccccCceeeccceeehhhhHHHHHHHHhcCceEEeecccccCCCccHHhHHHHHHHHHHhCCCCCCchhh
Confidence 35689999999999999999999999999999999999999999988777778877655554432 232211111111
Q ss_pred HHHHHHHHHHHhcc-cCCChHH-----HHHHH--------HHHHHHccCChHHH-----HHHHHHHHHHHHHHHHHHHhc
Q 007251 259 IGELQEFYRRSKNR-FDSDPAF-----KERAQ--------QAVVRLQSGEPKYH-----EAWAQICEISRKEFDKVYKRL 319 (611)
Q Consensus 259 i~~l~~~y~~~~~~-~~~d~~~-----~~~a~--------~~~~~le~gd~e~~-----~~w~~~~~~~~~~~~~~~~~L 319 (611)
..++. .+.+.. .-.++.+ +..|+ +.+..|---|+|+. .-|- ..+--.-.+++.++
T Consensus 122 eeEv~---eev~~~~~~~~~k~kgKKsk~aaK~g~~kYQw~IM~slGl~deEI~~F~d~~~WL---~yFPpLc~~dlk~~ 195 (1080)
T KOG0437|consen 122 EEEVE---EEVKTEDAIEDVKFKGKKSKAAAKTGGQKYQWEIMESLGLPDEEIKKFADPKHWL---YYFPPLCERDLKRF 195 (1080)
T ss_pred hhhhh---hcccccccccccccccchhhHHHhhcccchhHHHHHHcCCCHHHhhcccChhHHH---HhCChHHHHHHHHh
Confidence 11110 000000 0000011 11122 23333322233321 2231 11222334589999
Q ss_pred CCeeeeccc-------ccccCcHHHHHHHHHhCCCce---------eecccEEEe
Q 007251 320 RVDLEEKGE-------SFYNPYIPGVIDELSKQGLVE---------ESQGARVIF 358 (611)
Q Consensus 320 gV~f~~~~E-------s~y~~~v~~vi~~L~~~G~~~---------e~dGa~~~~ 358 (611)
|...||... .+|...|..-+..|++.|.+. ..||-=|.+
T Consensus 196 gl~iDWRRSFITTDvNpYyDsFVRWQ~n~L~~~gkI~fgkRyTIyspkDgQpCmD 250 (1080)
T KOG0437|consen 196 GLGIDWRRSFITTDVNPYYDSFVRWQFNKLKEAGKIKFGKRYTIYSPKDGQPCMD 250 (1080)
T ss_pred CCCcceeeeeeecccchhHHHHHHHHHHHHHhcCCcccCcceeeecCCCCCcccc
Confidence 999998632 244556888899999999874 356655654
No 121
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=94.17 E-value=0.034 Score=57.64 Aligned_cols=57 Identities=14% Similarity=0.195 Sum_probs=43.8
Q ss_pred EEEEeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEeeeeEEcCCCceeeeccCCcccHHHHHH
Q 007251 398 IYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLD 463 (611)
Q Consensus 398 IyV~g~dq~~hf~~l~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~dG~kmSkR~G~~v~l~dLld 463 (611)
+-++|.||..|+..-..+++.+++.. + .++...++.+.+|+|||||.|+.+. ..+.|
T Consensus 154 l~~~G~DQ~~~i~~~rd~a~r~~~~~------~--~~l~~~ll~~l~G~KMSKS~~~~~~-i~l~d 210 (269)
T cd00805 154 LQLGGSDQRGNITLGRDLIRKLGYKK------V--VGLTTPLLTGLDGGKMSKSEGNAIW-DPVLD 210 (269)
T ss_pred eeEecHHHHHHHHHHHHHHHHhCCCC------c--EEEeeccccCCCCCcccCCCCCccc-ccCCC
Confidence 44699999999999999999998741 2 3334456888899999999999985 44444
No 122
>cd07375 Anticodon_Ia_like Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains. This domain is found in a variety of class Ia aminoacyl tRNA synthetases, C-terminal to the catalytic core domain. It recognizes and specifically binds to the anticodon of the tRNA. Aminoacyl tRNA synthetases catalyze the transfer of cognate amino acids to the 3'-end of their tRNAs by specifically recognizing cognate from non-cognate amino acids. Members include valyl-, leucyl-, isoleucyl-, cysteinyl-, arginyl-, and methionyl-tRNA synthethases. This superfamily also includes a domain from MshC, an enzyme in the mycothiol biosynthetic pathway.
Probab=94.11 E-value=0.29 Score=42.67 Aligned_cols=75 Identities=21% Similarity=0.265 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHhCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhchhhc
Q 007251 530 LLYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSN 607 (611)
Q Consensus 530 lqYa~aRi~SIlrKa~~~~~~~~~~~~~~l~~~~e~~L~~~l~~fp~~v~~a~~~~~P~~l~~yL~~La~~fn~fY~~ 607 (611)
.++.+.|+++.+.+...+..+ .... ....+.+.+|+..+..+++.+.+++++++++.++..+++++...|.|++.
T Consensus 10 ~~n~~~r~~~~~~~~~~~~~~--~~~~-~~~~~~d~~l~~~~~~~~~~~~~~~e~~~~~~a~~~i~~~~~~~n~y~~~ 84 (117)
T cd07375 10 FLNRLYRLLSFFRKALGGTQP--KWDN-ELLEEADRELLARLQEFIKRTTNALEALDPTTAVQELFKFTNELNWYLDE 84 (117)
T ss_pred HHHHHHHHHHHHHHhcCCCCC--CcCh-hhcCHhhHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccHHHHH
Confidence 556778999887765422110 0000 01145578899999999999999999999999999999999999988863
No 123
>KOG0437 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=93.90 E-value=0.25 Score=56.65 Aligned_cols=61 Identities=7% Similarity=0.095 Sum_probs=44.0
Q ss_pred CCCCcEEEEeeeeEEcCCCceeeeccCCcccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhcCcchhhhhhccC
Q 007251 427 STYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKN 506 (611)
Q Consensus 427 ~~~~~~~Hv~~g~V~~~dG~kmSkR~G~~v~l~dLldea~~~a~~~~~~r~~~~~~~~~e~~~~a~~vg~~avRy~~L~~ 506 (611)
.|+..+--. |.++ -+++|||||.||+.||++-+++ +|+|+.|+.+...
T Consensus 693 ~WPkgiraN--GHLm-LNsEKMSKSTGNfmTL~qaieK-----------------------------Fgad~tRlalAda 740 (1080)
T KOG0437|consen 693 KWPKGIRAN--GHLM-LNSEKMSKSTGNFMTLEQAIEK-----------------------------FGADGTRLALADA 740 (1080)
T ss_pred cCccceeeC--ceEE-ecchhhccccCCeeeHHHHHHH-----------------------------hCccceeeeeecc
Confidence 454444433 4443 3467999999999999999998 8999999988766
Q ss_pred C-CCCccccccccc
Q 007251 507 N-RLTNYTFSFDQM 519 (611)
Q Consensus 507 ~-~~~~~~Fd~d~~ 519 (611)
. ...|.+|....+
T Consensus 741 GD~veDANF~ea~A 754 (1080)
T KOG0437|consen 741 GDGVEDANFVEANA 754 (1080)
T ss_pred cCCcccchhHHhcc
Confidence 3 346777765544
No 124
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=93.89 E-value=0.059 Score=56.03 Aligned_cols=64 Identities=16% Similarity=0.026 Sum_probs=46.9
Q ss_pred cCCCeEEEEEeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEeeeeEEcCCCceeeeccCCcccHHHHHHH
Q 007251 392 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDE 464 (611)
Q Consensus 392 ~~~d~iIyV~g~dq~~hf~~l~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~dG~kmSkR~G~~v~l~dLlde 464 (611)
.+++.+ .+|.||..|+..-..+++.++..+ .+...+. -++.+.+|.|||||.||.+.++.+.|.
T Consensus 152 ~~~~~v--p~G~DQ~~~i~l~rdla~r~n~~~-----~p~~l~~--p~l~~l~G~KMSKS~~~~i~l~~~~ds 215 (273)
T cd00395 152 EGCDIQ--PGGSDQWGNITLGRELARRFNGFT-----IAEGLTI--PLVTKLDGPKFGKSESGPKWLDTEKTS 215 (273)
T ss_pred cCCcEE--EecHHHHHHHHHHHHHHHHhCCCC-----CCeEEee--ccccCCCCCcCCCCCCCCccccccCCC
Confidence 455544 589999999999999998885321 1223444 357888999999999999877666654
No 125
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=93.45 E-value=0.059 Score=57.60 Aligned_cols=65 Identities=18% Similarity=0.258 Sum_probs=42.1
Q ss_pred cCCCeEEEEEeCCccccHHHHHHHHHHcCCCCCCCCCCCcEE---EEeeeeEEcCCCceeeeccCCcccHHH
Q 007251 392 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKAS---HVGFGLVLGEDGKRLRTRFSEVVRLVD 460 (611)
Q Consensus 392 ~~~d~iIyV~g~dq~~hf~~l~~~~~~lG~~~~~~~~~~~~~---Hv~~g~V~~~dG~kmSkR~G~~v~l~d 460 (611)
+++|.+ -+|.||..|+.....+++.++..-.+.-..+... |. -++-+-+|+|||||.||.|.|.|
T Consensus 148 ~~~d~V--pvG~DQ~qhleLtRdiA~rfn~~yg~~f~~P~~~~~~~~--~~l~gLdg~KMSKS~~n~I~L~D 215 (332)
T PRK12556 148 FQATHV--PVGKDQIQHIEIARDIATYFNHTFGDTFTLPEYVIQEEG--AILPGLDGRKMSKSYGNVIPLFA 215 (332)
T ss_pred ccCCEE--EeccccHHHHHHHHHHHHHHHHhccccCCCceecccccc--ccccCCCCCCCCCCCCCcccccC
Confidence 355644 4899999999999898888772100000012111 33 33666788999999999887654
No 126
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=93.15 E-value=0.069 Score=56.28 Aligned_cols=65 Identities=18% Similarity=0.200 Sum_probs=40.4
Q ss_pred EEeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEeeeeEEcCCC-ceeeeccCC-cccHHHHHHH
Q 007251 400 VTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDG-KRLRTRFSE-VVRLVDLLDE 464 (611)
Q Consensus 400 V~g~dq~~hf~~l~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~dG-~kmSkR~G~-~v~l~dLlde 464 (611)
=+|.||+.|+..-..+++.++..-...-..+...+..-..|.+-+| +|||||.+| +|.|.|=-++
T Consensus 150 PVG~DQ~qHleLtRDiA~rfn~~y~~~f~~P~~~~~~~~~i~gL~g~~KMSkS~~ns~I~L~D~~~~ 216 (314)
T COG0180 150 PVGEDQDQHLELTRDIARRFNHLYGEVFPLPEALISKVARLPGLDGPGKMSKSDPNSAIFLLDDPKT 216 (314)
T ss_pred ccCCCchHHHHHHHHHHHHHHhhcCCccCCccccccCCCcccCCCCCCcccccCCCCeeeccCCHHH
Confidence 3899999999999999998872100000011222221134655666 799999999 7776553333
No 127
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=92.36 E-value=0.097 Score=54.79 Aligned_cols=67 Identities=19% Similarity=0.266 Sum_probs=47.0
Q ss_pred CCCeEEEEEeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEeeeeEEcCCCc-eeeeccCC-cccHHHHHHHH
Q 007251 393 KAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGK-RLRTRFSE-VVRLVDLLDEA 465 (611)
Q Consensus 393 ~~d~iIyV~g~dq~~hf~~l~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~dG~-kmSkR~G~-~v~l~dLldea 465 (611)
++| +=+.|.||..|+.....+++.+|+... -..+...+. .++.+.+|. |||||.|| .|.|.|=-+++
T Consensus 149 ~~~--~~~~G~DQ~~~~~l~rd~a~k~~~~~~--~~~p~~l~~--~~l~~l~G~~KMSKS~~ns~I~L~d~~~~i 217 (292)
T PF00579_consen 149 KAD--LVPGGIDQRGHIELARDLARKFNYKEI--FPKPAGLTS--PLLPGLDGQKKMSKSDPNSAIFLDDSPEEI 217 (292)
T ss_dssp THS--EEEEEGGGHHHHHHHHHHHHHHTHHST--SSS-EEEEE--TCBBSTTSSSBTTTTTTGGS-BTTTTHHHH
T ss_pred ccc--cccccchHHHHHHHHHHHHhhhccccc--ccCchheee--ccccccCCccccCccCCccEEEEeccchhH
Confidence 445 346899999999999999999987300 012334444 467888898 99999999 88887665553
No 128
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=92.23 E-value=0.15 Score=56.06 Aligned_cols=65 Identities=18% Similarity=0.187 Sum_probs=42.8
Q ss_pred cCCCeEEEEEeCCccccHHHHHHHHHHcCCCC--CC--CCCCCcEEEEeeeeEEcCCCceeeeccCCcccHHH
Q 007251 392 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLS--AD--DSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVD 460 (611)
Q Consensus 392 ~~~d~iIyV~g~dq~~hf~~l~~~~~~lG~~~--~~--~~~~~~~~Hv~~g~V~~~dG~kmSkR~G~~v~l~d 460 (611)
+++|.+- +|.||..|...-..+++.++..- +. .|......|+ -.|.+-+|+|||||.||.|.|.|
T Consensus 147 y~ad~VP--VG~DQ~qHlELaRdIA~rFN~~yg~~~F~~Pe~~i~~~~--~~I~gLdg~KMSKS~~n~I~L~D 215 (431)
T PRK12284 147 FNAHKVP--VGRDQIQHIEMARDIAQRFNHLYGGEFFVLPEAVIEESV--ATLPGLDGRKMSKSYDNTIPLFA 215 (431)
T ss_pred cCCCEEE--EcchhHHHHHHHHHHHHHHhhhcCCcccCCCcccccccc--ccccCCCCccccCCCCCEeeecC
Confidence 3566554 89999999999889988876311 00 0111111222 34666788999999999997765
No 129
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=90.43 E-value=0.31 Score=50.93 Aligned_cols=66 Identities=21% Similarity=0.226 Sum_probs=41.8
Q ss_pred CCCeEEEEEeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEeeeeEEcCCC--ceeeeccC-CcccHHH
Q 007251 393 KAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDG--KRLRTRFS-EVVRLVD 460 (611)
Q Consensus 393 ~~d~iIyV~g~dq~~hf~~l~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~dG--~kmSkR~G-~~v~l~d 460 (611)
+++.+ .+|.||..|+.....+++.++..-...-..+...|....+|.+-+| +|||||.| +.|.|.|
T Consensus 137 ~~~~v--pvG~DQ~~h~~l~Rdia~r~n~~~~~~~~~P~~l~~~~~~i~~l~g~~~KMSKS~~~~~I~L~d 205 (280)
T cd00806 137 KACLV--PVGIDQDPHLELTRDIARRFNKLYGEIFPKPAALLSKGAFLPGLQGPSKKMSKSDPNNAIFLTD 205 (280)
T ss_pred cCCEE--eeccccHHHHHHHHHHHHHhccccccccCCCeeeccCCCccccCCCCCCcccCCCCCCeEEeeC
Confidence 44443 4699999999999999999982100000123334431233545554 59999999 9998875
No 130
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=89.26 E-value=0.39 Score=51.43 Aligned_cols=71 Identities=20% Similarity=0.241 Sum_probs=44.9
Q ss_pred cCCCeEEEEEeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEee-eeEEcCCCc--eeeeccC---CcccHHHHHHH
Q 007251 392 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGF-GLVLGEDGK--RLRTRFS---EVVRLVDLLDE 464 (611)
Q Consensus 392 ~~~d~iIyV~g~dq~~hf~~l~~~~~~lG~~~~~~~~~~~~~Hv~~-g~V~~~dG~--kmSkR~G---~~v~l~dLlde 464 (611)
+++|.+ .+|.||..|+.....+++.++..-...-..+...|..+ .+|.+-+|. |||||.+ +.|.+.|=-++
T Consensus 137 ~~~div--pvG~DQ~~h~elaRdia~~~n~~~~~~f~~P~~i~~~~~~~l~gL~g~~~KMSKS~~~~~~~I~l~D~~~~ 213 (333)
T PRK00927 137 YKADLV--PVGEDQKQHLELTRDIARRFNNLYGEVFPVPEPLIPKVGARVMGLDGPTKKMSKSDPNDNNTINLLDDPKT 213 (333)
T ss_pred cCCCEE--eeccchHHHHHHHHHHHHHhhhhccccCCCChhhhccccccccCCCCCCCCCCCCCCCCCCeEEeeCCHHH
Confidence 356655 48999999999999999888741000000223333323 345555665 9999999 89988763333
No 131
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=87.01 E-value=0.67 Score=49.62 Aligned_cols=63 Identities=19% Similarity=0.251 Sum_probs=40.8
Q ss_pred CCCeEEEEEeCCccccHHHHHHHHHHcCCCCCCCCC--CCc--EEEEeeeeEEcCCC-ceeeeccCCcccHHH
Q 007251 393 KAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDST--YPK--ASHVGFGLVLGEDG-KRLRTRFSEVVRLVD 460 (611)
Q Consensus 393 ~~d~iIyV~g~dq~~hf~~l~~~~~~lG~~~~~~~~--~~~--~~Hv~~g~V~~~dG-~kmSkR~G~~v~l~d 460 (611)
++|.+ .+|.||..|+.....+++.+|..-. .+. .+. ..|. -+|.+-+| +|||||.++.|.|.|
T Consensus 142 ~~d~v--pvG~DQ~~h~~laRdiA~~~n~~~~-~~~~~~p~~~~~~~--~~i~~L~g~~KMSKS~~~~I~L~D 209 (333)
T PRK12282 142 KATLV--PVGDDQLPMIEQTREIVRRFNSLYG-TDVLVEPEALLPEA--GRLPGLDGKAKMSKSLGNAIYLSD 209 (333)
T ss_pred CCCEE--EeccccHHHHHHHHHHHHHHhhhcC-CccccCchhcccCC--CcccCCCCCCcCCCCCCCeeeeeC
Confidence 55644 4899999999999999998883100 000 011 1121 23544455 699999999988766
No 132
>cd07957 Anticodon_Ia_Met Anticodon-binding domain of methionyl tRNA synthetases. This domain is found in methionyl tRNA synthetases (MetRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon (CAU). MetRS catalyzes the transfer of methionine to the 3'-end of its tRNA.
Probab=85.51 E-value=5.5 Score=35.43 Aligned_cols=69 Identities=14% Similarity=0.077 Sum_probs=52.5
Q ss_pred HHHHHHHHHHhCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhchhhc
Q 007251 534 HARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSN 607 (611)
Q Consensus 534 ~aRi~SIlrKa~~~~~~~~~~~~~~l~~~~e~~L~~~l~~fp~~v~~a~~~~~P~~l~~yL~~La~~fn~fY~~ 607 (611)
..|+.++..+...+.. +. ...+ ++.+.+++..+.+....+.+++++++++.++.-+++++...|+|.+.
T Consensus 13 l~r~~~~~~~~~~~~~--~~--~~~~-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~n~y~~~ 81 (129)
T cd07957 13 VNRTLNMASKYFGGVV--PE--FGGL-TEEDEELLEEAEELLEEVAEAMEELEFRKALEEIMELARAANKYIDE 81 (129)
T ss_pred HHHHHHHHHHHcCCcC--CC--CCCC-CcccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhcc
Confidence 3788888877643321 11 1111 34466799999999999999999999999999999999999988764
No 133
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=85.29 E-value=0.81 Score=49.93 Aligned_cols=38 Identities=21% Similarity=0.390 Sum_probs=26.0
Q ss_pred ecCCCCCCCCcchhhhHHHHHHHHHHHHH-HCCCeEEEEeccCCch
Q 007251 190 FSSPNIAKEMHVGHLRSTIIGDSLARMLE-FSNVEVLRRNHVGDWG 234 (611)
Q Consensus 190 ~~SpNp~kplHvGHlRsaiiGDsLariL~-~~Gy~V~r~~yinD~G 234 (611)
|++--|+|.||+||.-+++ .+..+ ..|+++ -+.|-||=
T Consensus 6 ~sGiqPSG~~HLGnylG~i-----k~wv~lq~~~~~--~~~IADlH 44 (398)
T PRK12283 6 LSGMRPTGRLHLGHYHGVL-----KNWVKLQHEYEC--FFFVADWH 44 (398)
T ss_pred EEEeCCCCcchHHHHHHHH-----HHHHHHhcCCcE--EEEeecHH
Confidence 7888999999999976644 34333 236665 35677763
No 134
>PRK01233 glyS glycyl-tRNA synthetase subunit beta; Validated
Probab=82.51 E-value=6.4 Score=46.18 Aligned_cols=82 Identities=22% Similarity=0.242 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHHHHhCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhchhh
Q 007251 527 AVYLLYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYS 606 (611)
Q Consensus 527 ~~ylqYa~aRi~SIlrKa~~~~~~~~~~~~~~l~~~~e~~L~~~l~~fp~~v~~a~~~~~P~~l~~yL~~La~~fn~fY~ 606 (611)
..-+.-++-|+..|++|....... ..++..+.+++|+.|...+......+..+....+...+..+|.+|....+.|++
T Consensus 568 ~~~l~~~~kRv~NIl~k~~~~~~~--~v~~~l~~~~~E~~L~~~~~~~~~~~~~~~~~~~y~~~l~~l~~L~~~Id~FFD 645 (682)
T PRK01233 568 FKALAAANKRVSNILKKAEGKVSG--EVDPALFEEPAEKALYAALEELKPKVEPALAAGDYQAALEALAALRPPVDAFFD 645 (682)
T ss_pred HHHHHHHHHHHHHHHhccccccCC--ccChhHcCCHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhhhHHHHHhC
Confidence 334666899999999987532110 123345778999999999999988888888888888999999999999999999
Q ss_pred cccC
Q 007251 607 NCQV 610 (611)
Q Consensus 607 ~~~V 610 (611)
+.-|
T Consensus 646 ~VmV 649 (682)
T PRK01233 646 NVMV 649 (682)
T ss_pred CCee
Confidence 8654
No 135
>cd07958 Anticodon_Ia_Leu_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes bacterial and eukaryotic mitochondrial members, as well as LeuRS from the archaeal Halobacteria. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=81.49 E-value=3.9 Score=35.77 Aligned_cols=72 Identities=13% Similarity=0.185 Sum_probs=53.4
Q ss_pred HHHHHHHHHHhCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhchhhcc
Q 007251 534 HARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNC 608 (611)
Q Consensus 534 ~aRi~SIlrKa~~~~~~~~~~~~~~l~~~~e~~L~~~l~~fp~~v~~a~~~~~P~~l~~yL~~La~~fn~fY~~~ 608 (611)
..|+-++.++...+. .+......+ .+.++.++..+.+..+.+.+++++++.+.++.-+++++..+|+|++..
T Consensus 13 l~R~~~~~~~~~~~~--~~~~~~~~~-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~n~~~~~~ 84 (117)
T cd07958 13 LNRVWRLVTELAEAL--AAPAAAAEL-SEEDKELRRKLHKTIKKVTEDIERLRFNTAIAALMELVNALYKYKKKD 84 (117)
T ss_pred HHHHHHHHHHHHhhc--ccccccccc-chhhHHHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhccc
Confidence 368888887753221 111000112 345677999999999999999999999999999999999999998753
No 136
>TIGR00211 glyS glycyl-tRNA synthetase, tetrameric type, beta subunit. The glycyl-tRNA synthetases differ even among the eubacteria in oligomeric structure. In Escherichia coli and most others, it is a heterodimer of two alpha chains and two beta chains, encoded by tandem genes. The genes are similar, but fused, in Chlamydia trachomatis. By contrast, the glycyl-tRNA synthetases of Thermus thermophilus and of archaea and eukaryotes differ considerably; they are homodimeric, mutually similar, and not detected by this model.
Probab=79.82 E-value=10 Score=44.64 Aligned_cols=82 Identities=20% Similarity=0.210 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHHHHhCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhchhh
Q 007251 527 AVYLLYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYS 606 (611)
Q Consensus 527 ~~ylqYa~aRi~SIlrKa~~~~~~~~~~~~~~l~~~~e~~L~~~l~~fp~~v~~a~~~~~P~~l~~yL~~La~~fn~fY~ 606 (611)
..-+.-++.|+..|++|....... ..+...+.+++|+.|...+..+-..+...+..-+-..+...|.+|....+.|++
T Consensus 578 ~~~l~~a~kRv~NIl~k~~~~~~~--~v~~~l~~~~~E~~L~~~~~~~~~~~~~~~~~~~y~~~l~~l~~L~~~Id~FFD 655 (691)
T TIGR00211 578 AEALAAANKRVANILKKGNPVLSS--EIQANLFKEPKEKALFEAVLAIKMNAQESFESGDYETALEALAELRAPVDEFFD 655 (691)
T ss_pred HHHHHHHHHHHHHHHhcccccccC--ccChhHcCCHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHhhhHHHHHhC
Confidence 345667899999999997522110 123345779999999999999877777777666778889999999999999999
Q ss_pred cccC
Q 007251 607 NCQV 610 (611)
Q Consensus 607 ~~~V 610 (611)
+.-|
T Consensus 656 ~VmV 659 (691)
T TIGR00211 656 SVMV 659 (691)
T ss_pred CCEe
Confidence 8654
No 137
>cd07959 Anticodon_Ia_Leu_AEc Anticodon-binding domain of archaeal and eukaryotic cytoplasmic leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes archaeal and eukaryotic cytoplasmic members. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=79.15 E-value=15 Score=32.15 Aligned_cols=68 Identities=15% Similarity=0.013 Sum_probs=51.3
Q ss_pred HHHHHHHHHhCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH-HHHHHHHhchhhcc
Q 007251 535 ARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYL-YNLSEYFTRFYSNC 608 (611)
Q Consensus 535 aRi~SIlrKa~~~~~~~~~~~~~~l~~~~e~~L~~~l~~fp~~v~~a~~~~~P~~l~~yL-~~La~~fn~fY~~~ 608 (611)
.|+.++.++...+. .+. ..+ ++.++.++..+......+.+++++++++.++..+ +++....|.|.+.+
T Consensus 14 ~R~~~~~~~~~~~~--~~~---~~~-~~~d~~~~~~~~~~i~~v~~~~~~~~f~~a~~~~~~~~~~~~~~Y~~~~ 82 (117)
T cd07959 14 ERFYELAEELIETE--GEL---EEL-TFIDRWLLSRLNRLIKETTEAYENMQFREALKEGLYELQNDLDWYRERG 82 (117)
T ss_pred HHHHHHHHHHHhcc--CCc---ccc-chhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 68888888742211 111 112 4567889999999999999999999999999997 99999888776543
No 138
>KOG1148 consensus Glutaminyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=77.87 E-value=2.3 Score=47.98 Aligned_cols=59 Identities=20% Similarity=0.205 Sum_probs=47.8
Q ss_pred CceEEEEecCCCCCCCCcchhhhHHH----------------------------HHHHHHHHHHHCCCeEEEEeccCCch
Q 007251 183 VKKAVVDFSSPNIAKEMHVGHLRSTI----------------------------IGDSLARMLEFSNVEVLRRNHVGDWG 234 (611)
Q Consensus 183 ~~kV~Ve~~SpNp~kplHvGHlRsai----------------------------iGDsLariL~~~Gy~V~r~~yinD~G 234 (611)
|++|+- ---|-|+|.|||||+.... ..++|..+-+++||+-.++.|--|.=
T Consensus 246 GGkV~T-RFPPEPNG~LHIGHaKAInvNFgyAk~~~G~cyLRfDDTNPEkEee~yf~sI~e~V~WLG~~P~kvTysSDyF 324 (764)
T KOG1148|consen 246 GGKVVT-RFPPEPNGILHIGHAKAINVNFGYAKAHGGVCYLRFDDTNPEKEEEEYFESIKEMVAWLGFEPYKVTYSSDYF 324 (764)
T ss_pred CCeeEE-eCCCCCCceeeecchhheeechhhhhhhCCeEEEecCCCCcchhhHHHHHHHHHHHHHhCCCceeeecchhHH
Confidence 556654 5579999999999987432 45899999999999999999999997
Q ss_pred hHHHHHHH
Q 007251 235 TQFGMLIE 242 (611)
Q Consensus 235 ~Q~~~l~~ 242 (611)
.|+-.++.
T Consensus 325 dqLy~~av 332 (764)
T KOG1148|consen 325 DQLYELAV 332 (764)
T ss_pred HHHHHHHH
Confidence 77765553
No 139
>PLN02886 aminoacyl-tRNA ligase
Probab=72.51 E-value=4.2 Score=44.39 Aligned_cols=38 Identities=18% Similarity=0.251 Sum_probs=27.4
Q ss_pred ecCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCc
Q 007251 190 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 233 (611)
Q Consensus 190 ~~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~ 233 (611)
|++--|||.+|+||.-+++ .-...+-+ ||++. +.|-||
T Consensus 50 ~sGiqPSG~lHLGnylGai--~~~v~lQ~--~~~~~--~~IADl 87 (389)
T PLN02886 50 VSGVQPTGSIHLGNYLGAI--KNWVALQE--TYDTF--FCVVDL 87 (389)
T ss_pred EEEECCCCccHHHHHHHHH--HHHHHHhc--cCCEE--EEEecH
Confidence 8999999999999976665 33334433 78763 567776
No 140
>COG0751 GlyS Glycyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis]
Probab=70.10 E-value=22 Score=41.50 Aligned_cols=82 Identities=23% Similarity=0.244 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHHHHhCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhchhh
Q 007251 527 AVYLLYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYS 606 (611)
Q Consensus 527 ~~ylqYa~aRi~SIlrKa~~~~~~~~~~~~~~l~~~~e~~L~~~l~~fp~~v~~a~~~~~P~~l~~yL~~La~~fn~fY~ 606 (611)
+--+--++.|+..|+.|....... ..++..+.++.|..|...+..+...+..+...-+-..+...|.+|..-...|++
T Consensus 577 ~~~l~~a~kRv~nIl~k~~~~~~~--~v~~~Lf~~~~E~~L~~a~~~~~~~~~~a~a~~~y~~al~~L~~L~~pId~FFd 654 (691)
T COG0751 577 AKALAAANKRVSNILAKAEKKLSG--TVDPSLFEEDAEKALFEALQALKPKVAEALAEKDYQDALAALAELRPPIDEFFD 654 (691)
T ss_pred hHHHHHHHHHHHHHHHhcccccCC--ccChHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhHHHHhc
Confidence 333446889999999998631111 123455678999999999999999999999888888888999999999999998
Q ss_pred cccC
Q 007251 607 NCQV 610 (611)
Q Consensus 607 ~~~V 610 (611)
+.-|
T Consensus 655 ~VmV 658 (691)
T COG0751 655 NVMV 658 (691)
T ss_pred Ccee
Confidence 8654
No 141
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=69.67 E-value=4.7 Score=41.80 Aligned_cols=40 Identities=23% Similarity=0.322 Sum_probs=29.5
Q ss_pred ecCCCCCC-CCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCchh
Q 007251 190 FSSPNIAK-EMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGT 235 (611)
Q Consensus 190 ~~SpNp~k-plHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~G~ 235 (611)
|++--||| .||+||+-.. . .+.++.++ |++| ...|+||=.
T Consensus 4 y~G~~PTg~~lHLG~~~~~-~--~~~~lq~~-g~~~--~ilI~D~~a 44 (269)
T cd00805 4 YIGFDPTAPSLHLGHLVPL-M--KLRDFQQA-GHEV--IVLIGDATA 44 (269)
T ss_pred EEeeCCCCCcccHHHHHHH-H--HHHHHHHC-CCeE--EEEECCCee
Confidence 78889999 8999997743 2 56666664 9886 456788743
No 142
>COG4746 Uncharacterized protein conserved in archaea [Function unknown]
Probab=66.75 E-value=15 Score=30.48 Aligned_cols=70 Identities=20% Similarity=0.233 Sum_probs=46.3
Q ss_pred HhHHHHHHHHHHHHHHhc-CCCCCCCccccc-cc-CC----CCcccccchhHHHHHHhcCCCCCCCChHHHHHHHHHhC
Q 007251 65 GNVKRELEKVFDLALKAT-VPNETDVRPLIA-AC-TA----KFGDYQCNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNL 136 (611)
Q Consensus 65 ~~~~~~~~~~i~~a~~~~-~~~~~~~~~~v~-~~-~~----~~GD~~~n~A~~lak~~k~~~~~~~~P~~iA~~l~~~l 136 (611)
+.+++.++..|.+++... +|... ...++. .| -+ +-|+.+.. |+.++|.+-...-..|+|.++|..|+++.
T Consensus 2 m~v~~e~~~qiv~~~k~a~fPInn-~~eL~~ALP~G~dttc~~G~~e~t-A~E~~kLlT~~DFPfk~a~~vad~iv~~~ 78 (80)
T COG4746 2 MTVREEIREQIVEALKGADFPINN-PEELVAALPSGPDTTCESGGVEVT-AAEAGKLLTDADFPFKSAEQVADTIVNKA 78 (80)
T ss_pred ccHHHHHHHHHHHHHccCCCCCCC-HHHHHHhccCCCCCCccCCCeeee-HHHHHhhccccCCCCCCHHHHHHHHHHhc
Confidence 456777888888877642 44211 111221 22 11 56777765 78899888767777899999999999865
No 143
>PRK14908 glycyl-tRNA synthetase; Provisional
Probab=65.93 E-value=34 Score=41.83 Aligned_cols=77 Identities=18% Similarity=0.109 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHHhCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhchhh
Q 007251 527 AVYLLYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYS 606 (611)
Q Consensus 527 ~~ylqYa~aRi~SIlrKa~~~~~~~~~~~~~~l~~~~e~~L~~~l~~fp~~v~~a~~~~~P~~l~~yL~~La~~fn~fY~ 606 (611)
..-+.-++.|+..|++|.... . .+...+.+++|+.|...+......+... .-+-..+...|.+|....+.|++
T Consensus 893 ~~~l~~a~kRv~NIl~k~~~~--~---vd~~Lf~~~~E~~L~~a~~~~~~~~~~~--~~dy~~al~~La~L~~~Id~FFD 965 (1000)
T PRK14908 893 FAEIAAALNRLKRILASLSFS--V---TDASLLLEPAELNLKQALDAFREELTEL--PIDLKDYVAAAAELPQAVNTFFD 965 (1000)
T ss_pred HHHHHHHHHHHHHHHhhcCCC--c---cChhhcCCHHHHHHHHHHHHHHHHHHHh--hhhHHHHHHHHHhhhhHHHHHhC
Confidence 345667899999999997521 1 2334567899999999998887777655 23556677889999999999999
Q ss_pred cccC
Q 007251 607 NCQV 610 (611)
Q Consensus 607 ~~~V 610 (611)
+.-|
T Consensus 966 ~VmV 969 (1000)
T PRK14908 966 EVLV 969 (1000)
T ss_pred CCEe
Confidence 8654
No 144
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=65.45 E-value=6.5 Score=41.11 Aligned_cols=43 Identities=21% Similarity=0.403 Sum_probs=29.4
Q ss_pred ceEEEEecCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCc
Q 007251 184 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 233 (611)
Q Consensus 184 ~kV~Ve~~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~ 233 (611)
++..| |++-.|||+||+||+=... -+.++.+ .|++|.. -|+||
T Consensus 4 ~~~~~-y~G~~PTg~lHlG~l~~~~---~~~~lq~-~g~~~~i--~iaD~ 46 (292)
T PF00579_consen 4 KPFRV-YTGIDPTGDLHLGHLVPIM---KLIWLQK-AGFKVII--LIADL 46 (292)
T ss_dssp SSEEE-EEEEESSSS-BHHHHHHHH---HHHHHHH-TTSEEEE--EEEHH
T ss_pred CCcEE-EEeECCCCcccchHHHHHH---HHHHHHh-cCCccce--Eecch
Confidence 34555 8999999999999876554 3444444 7998776 45665
No 145
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=61.70 E-value=8.3 Score=40.26 Aligned_cols=39 Identities=18% Similarity=0.198 Sum_probs=27.7
Q ss_pred ecCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCc
Q 007251 190 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 233 (611)
Q Consensus 190 ~~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~ 233 (611)
|++--|||.||+||.-+++.- ..-|..+|++|.. .|.|+
T Consensus 3 ~tG~~PTG~lHLG~~~~al~~---~~~lQ~ag~~~~~--~IaD~ 41 (280)
T cd00806 3 LSGIQPSGSLHLGHYLGAFRF---WVWLQEAGYELFF--FIADL 41 (280)
T ss_pred EEeeCCCchhhHHHHHHHHHH---HHHHHhCCCCEEE--Eecch
Confidence 678899999999998775542 2333455887654 47776
No 146
>cd07962 Anticodon_Ia_Val Anticodon-binding domain of valyl tRNA synthetases. This domain is found in valyl tRNA synthetases (ValRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ValRS catalyzes the transfer of valine to the 3'-end of its tRNA.
Probab=55.71 E-value=32 Score=31.29 Aligned_cols=48 Identities=19% Similarity=0.139 Sum_probs=42.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH--HHhchhhcc
Q 007251 561 HADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSE--YFTRFYSNC 608 (611)
Q Consensus 561 ~~~e~~L~~~l~~fp~~v~~a~~~~~P~~l~~yL~~La~--~fn~fY~~~ 608 (611)
.+.+..++..+..+++.+.+++++++.+.++..+++++. ..|.|.+.+
T Consensus 41 ~~~d~~l~~~~~~~~~~~~~~~e~~~~~~al~~i~~~~~~~~~N~Yi~~~ 90 (135)
T cd07962 41 SLADRWILSRLNKTVEEVTEALENYRFSEAATALYEFFWNDFCDWYLELV 90 (135)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhHHHHHHh
Confidence 355678999999999999999999999999999999986 788888754
No 147
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=54.56 E-value=14 Score=38.37 Aligned_cols=38 Identities=16% Similarity=0.239 Sum_probs=25.5
Q ss_pred ecCCCCCC-CCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCc
Q 007251 190 FSSPNIAK-EMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 233 (611)
Q Consensus 190 ~~SpNp~k-plHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~ 233 (611)
|++--||| .||+||+-. -. ..+.|...|++|.. -|+|+
T Consensus 3 y~G~~PTg~~lHlGh~~~---l~-~~~~lq~~g~~~~~--~I~d~ 41 (273)
T cd00395 3 YCGIDPTADSLHIGHLIG---LL-TFRRFQHAGHRPIF--LIGGQ 41 (273)
T ss_pred EEeEcCCCCCccHHHHHH---HH-HHHHHHHCCCCEEE--EEecC
Confidence 67888999 699999654 12 23334456988754 46665
No 148
>PLN02886 aminoacyl-tRNA ligase
Probab=46.89 E-value=15 Score=40.25 Aligned_cols=28 Identities=18% Similarity=0.247 Sum_probs=22.2
Q ss_pred cCCCeEEEEEeCCccccHHHHHHHHHHcCC
Q 007251 392 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGW 421 (611)
Q Consensus 392 ~~~d~iIyV~g~dq~~hf~~l~~~~~~lG~ 421 (611)
+++|.+ -+|.||..|+.....+++.++.
T Consensus 183 ~~a~~V--PVG~DQ~qH~eLtRdiA~rfN~ 210 (389)
T PLN02886 183 YQADLV--PVGEDQKQHLELTRDIAERVNN 210 (389)
T ss_pred cCCCeE--EEccchHHHHHHHHHHHHHHhh
Confidence 356654 4899999999999899888764
No 149
>cd07961 Anticodon_Ia_Ile_ABEc Anticodon-binding domain of archaeal, bacterial, and eukaryotic cytoplasmic isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial, archaeal, and eukaryotic cytoplasmic members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=43.31 E-value=56 Score=31.38 Aligned_cols=45 Identities=13% Similarity=0.144 Sum_probs=40.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhchh
Q 007251 561 HADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFY 605 (611)
Q Consensus 561 ~~~e~~L~~~l~~fp~~v~~a~~~~~P~~l~~yL~~La~~fn~fY 605 (611)
...++.++.++.+.-..+.+++++++.+.++..++++...+.++|
T Consensus 46 ~~~D~wil~~l~~~i~~~~~~~e~~~f~~a~~~l~~f~~~~~~~Y 90 (183)
T cd07961 46 NVLDRWILSRLNSLIKEVTEEMEAYDLYTAVRALLEFIDELTNWY 90 (183)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhH
Confidence 456788999999999999999999999999999999998776776
No 150
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=40.24 E-value=29 Score=37.27 Aligned_cols=40 Identities=13% Similarity=0.149 Sum_probs=26.7
Q ss_pred ecCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCchh
Q 007251 190 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGT 235 (611)
Q Consensus 190 ~~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~G~ 235 (611)
|++--|||++|+||.-.++. -.+-|...|. | ...|.||=.
T Consensus 6 ~sG~~PTG~~HLGn~l~~~~---~~~~lQ~~~~-~--~i~IaD~ha 45 (333)
T PRK12282 6 LTGDRPTGKLHLGHYVGSLK---NRVALQNEHE-Q--FVLIADQQA 45 (333)
T ss_pred EEeeCCCCcchHHHHHHHHH---HHHHHHhCCC-E--EEEEccchh
Confidence 78999999999999655432 1223445564 4 466888743
No 151
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=39.55 E-value=21 Score=38.24 Aligned_cols=41 Identities=15% Similarity=0.230 Sum_probs=27.9
Q ss_pred ecCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCchhH
Q 007251 190 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQ 236 (611)
Q Consensus 190 ~~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~G~Q 236 (611)
|++--|||+||+||.=+++ --+.++-+ +++| ...|.||=.+
T Consensus 5 ~~G~~PTG~lHLG~~~g~~--~~~~~lQ~--~~~~--~~~IaD~ha~ 45 (333)
T PRK00927 5 LSGIQPTGKLHLGNYLGAI--KNWVELQD--EYEC--FFCIADLHAL 45 (333)
T ss_pred EEeeCCCccchHHhHHHHH--HHHHHHHh--cCCe--EEEEecHHHH
Confidence 7888999999999977664 23444443 2555 4568887443
No 152
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=39.11 E-value=30 Score=38.37 Aligned_cols=40 Identities=15% Similarity=0.174 Sum_probs=26.9
Q ss_pred ecCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCc
Q 007251 190 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 233 (611)
Q Consensus 190 ~~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~ 233 (611)
||+--|||.+|+||.-+++- . ..++....||++ .+.|-||
T Consensus 6 lSGiqPTG~lHLGNylGaik-~-~v~lq~q~~~~~--~~~IADl 45 (431)
T PRK12284 6 LTGITTTGTPHLGNYAGAIR-P-AIAASRQPGVES--FYFLADY 45 (431)
T ss_pred EEEecCCCcchHHHHHHHHH-H-HHHHHHhCCCcE--EEEeech
Confidence 89999999999999554442 1 233444568875 4456666
No 153
>cd07960 Anticodon_Ia_Ile_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial and eukaryotic mitochondrial members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=38.42 E-value=85 Score=30.00 Aligned_cols=46 Identities=17% Similarity=0.092 Sum_probs=39.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH-HH-hchhh
Q 007251 561 HADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSE-YF-TRFYS 606 (611)
Q Consensus 561 ~~~e~~L~~~l~~fp~~v~~a~~~~~P~~l~~yL~~La~-~f-n~fY~ 606 (611)
.+.+++++..+..+...+.+++++++.+.++.-+++++. .+ |.|++
T Consensus 43 ~~~D~~il~~l~~~i~~~~~~~e~~~f~~a~~~i~~f~~~~l~n~Yi~ 90 (180)
T cd07960 43 LELDRYALHRLNELIKEVREAYENYEFHKVYQALNNFCTVDLSAFYLD 90 (180)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 455678999999999999999999999999999999985 45 55544
No 154
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=37.49 E-value=26 Score=37.55 Aligned_cols=40 Identities=15% Similarity=0.118 Sum_probs=25.4
Q ss_pred ecCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCc
Q 007251 190 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 233 (611)
Q Consensus 190 ~~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~ 233 (611)
||+--|||.||+||.-+++-- ..++... +++...+.|-||
T Consensus 7 ~sGiqPTG~~HLGnylga~k~--~~~lq~~--~~~~~~~~IADl 46 (332)
T PRK12556 7 LTGIKPTGYPHLGNYIGAIKP--ALQMAKN--YEGKALYFIADY 46 (332)
T ss_pred EEEECCCCcchHHHHHHHHHH--HHHHHHh--cCCeEEEEEech
Confidence 899999999999995444321 1223334 444445567776
No 155
>PF03464 eRF1_2: eRF1 domain 2; InterPro: IPR005141 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre. The crystal structure of human eRF1 is known []. The overall shape and dimensions of eRF1 resemble a tRNA molecule with domains 1, 2, and 3 of eRF1 corresponding to the anticodon loop, aminoacyl acceptor stem, and T stem of a tRNA molecule, respectively. The position of the essential GGQ motif at an exposed tip of domain 2 suggests that the Gln residue coordinates a water molecule to mediate the hydrolytic activity at the peptidyl transferase centre. A conserved groove on domain 1, 80 A from the GGQ motif, is proposed to form the codon recognition site []. This domain is also found in other proteins which may also be involved in translation termination ; PDB: 3AGK_A 2VGN_A 2VGM_A 3J16_A 3IZQ 3IR9_A 3OBW_A 3MCA_B 2QI2_A 3E1Y_D ....
Probab=36.88 E-value=1.2e+02 Score=27.67 Aligned_cols=75 Identities=19% Similarity=0.211 Sum_probs=40.4
Q ss_pred hHHHHHHHHHhCC-CCCCcceeEEecCceeEeecCHHHHHHHHHHHHHcCCCCCCccCCCceEEEEecCCCCCCCCcchh
Q 007251 125 PQPVGQAIMKNLP-PSEMIESCSVAGPGFVNVVLSKNWMAKNIQKMLVDGIETWAPKLRVKKAVVDFSSPNIAKEMHVGH 203 (611)
Q Consensus 125 P~~iA~~l~~~l~-~~~~i~~vevagpGfIN~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~kV~Ve~~SpNp~kplHvGH 203 (611)
-.+|++.|.+.+- ..+.+..|-|+||||. +.++......+.-.. +..++.++.+|- -|..-
T Consensus 56 ~~~i~~~l~~~f~~~~~~~~~iIiaGPGf~----k~~f~~~l~~~~~~~---------~~~~i~~~~~s~-----~~~~g 117 (133)
T PF03464_consen 56 FKEIAEALKKYFLVNFDDVKCIIIAGPGFT----KEEFYKYLKAEARRK---------DKKKIVVVDTSS-----GGESG 117 (133)
T ss_dssp HHHHHHHHHHHCCCHTTTCSEEEEEESTTH----HHHHHHHHHHHHHHH---------TCCEEEEEE-SS-----SCHHH
T ss_pred HHHHHHHHHHHhhhccccccEEEEECCHHH----HHHHHHHHHHhhHhh---------cCCEEEEEECCC-----CCHHH
Confidence 3788999998831 1245788999999963 223222222221111 124666766665 35555
Q ss_pred hhHHHHHHHHHHHH
Q 007251 204 LRSTIIGDSLARML 217 (611)
Q Consensus 204 lRsaiiGDsLariL 217 (611)
++-.+-=+.+.++|
T Consensus 118 l~Evl~~~~v~~~l 131 (133)
T PF03464_consen 118 LNEVLKRPEVQKIL 131 (133)
T ss_dssp HHHHHHSHHHHHHH
T ss_pred HHHHHHhhhHHHHh
Confidence 55555444444444
No 156
>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]
Probab=35.99 E-value=26 Score=39.65 Aligned_cols=50 Identities=20% Similarity=0.099 Sum_probs=38.2
Q ss_pred CCCceEEEEecCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCchh
Q 007251 181 LRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGT 235 (611)
Q Consensus 181 ~~~~kV~Ve~~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~G~ 235 (611)
..+|+.+.++|-..|.-.+-.||+||-|-.|.---.|+. .-+|.||||-.
T Consensus 123 s~~k~w~f~~~~s~~~~e~~~~~l~n~~~~~~~~~~lrl-----h~~ylind~~~ 172 (757)
T KOG4368|consen 123 SAGKNWMFSNAKSPPHCELMAGHLRNRITADGAHFELRL-----HLIYLINDVLH 172 (757)
T ss_pred HHhhhhhhhcCCCchHHHHHHHHHHhhhcccccchhhhh-----hhHHHHHHHHH
Confidence 457889999999888888889999998887764444432 34688999954
No 157
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=31.94 E-value=40 Score=32.95 Aligned_cols=31 Identities=29% Similarity=0.228 Sum_probs=27.4
Q ss_pred chhhhHHHHHHHHHHHHHHCCCeEEEEeccC
Q 007251 201 VGHLRSTIIGDSLARMLEFSNVEVLRRNHVG 231 (611)
Q Consensus 201 vGHlRsaiiGDsLariL~~~Gy~V~r~~yin 231 (611)
+||--+++|.=-+||.|+..|++|.++.-++
T Consensus 71 ~G~S~Gg~lA~E~A~~Le~~G~~v~~l~liD 101 (229)
T PF00975_consen 71 AGWSFGGILAFEMARQLEEAGEEVSRLILID 101 (229)
T ss_dssp EEETHHHHHHHHHHHHHHHTT-SESEEEEES
T ss_pred hccCccHHHHHHHHHHHHHhhhccCceEEec
Confidence 5999999999999999999999999988665
No 158
>KOG2623 consensus Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=27.55 E-value=90 Score=34.14 Aligned_cols=57 Identities=12% Similarity=0.022 Sum_probs=36.6
Q ss_pred eEEEEEeCCccccHHHHHHHHHHc-CCCCCCCCCCCcEEEEeeeeEEcCCCceeeeccCCcccHH
Q 007251 396 WIIYVTDVGQQLHFDMVFSAAKRA-GWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLV 459 (611)
Q Consensus 396 ~iIyV~g~dq~~hf~~l~~~~~~l-G~~~~~~~~~~~~~Hv~~g~V~~~dG~kmSkR~G~~v~l~ 459 (611)
.-+-+-|.||-++...-....+.+ +.. ....-+.+-+++..+|.|+-||.||.|.|+
T Consensus 228 ~~~QlGGsDQwGNitaG~dlI~ki~~~~-------~~vfGlT~PLlTsstG~KlGKSaGnAvWLd 285 (467)
T KOG2623|consen 228 CRFQLGGSDQWGNITAGTDLIRKIMPIQ-------AFVFGLTFPLLTSSTGAKLGKSAGNAVWLD 285 (467)
T ss_pred eeEEecccccccccchHHHHHHHhcccc-------cceeeeeeeeEecCcchhhccCCCceEEec
Confidence 445678999988876544433322 210 111223344678889999999999999765
No 159
>PF08373 RAP: RAP domain; InterPro: IPR013584 The ~60-residue RAP (an acronym for RNA-binding domain abundant in Apicomplexans) domain is found in various proteins in eukaryotes. It is particularly abundant in apicomplexans and might mediate a range of cellular functions through its potential interactions with RNA []. The RAP domain consists of multiple blocks of charged and aromatics residues and is predicted to be composed of alpha helical and beta strand structures. Two predicted loop regions that are dominated by glycine and tryptophan residues are found before and after the central beta sheet []. Some proteins known to contain a RAP domain are listed below: Human hypothetical protein MGC5297, Mammalian FAST kinase domain-containing proteins (FASTKDs), Chlamydomonas reinhardtii chloroplastic trans-splicing factor Raa3.
Probab=27.48 E-value=46 Score=25.52 Aligned_cols=35 Identities=14% Similarity=0.082 Sum_probs=22.0
Q ss_pred CCCCcchhhhHHHHHHHH--HHHHHHCCCeEEEEecc
Q 007251 196 AKEMHVGHLRSTIIGDSL--ARMLEFSNVEVLRRNHV 230 (611)
Q Consensus 196 ~kplHvGHlRsaiiGDsL--ariL~~~Gy~V~r~~yi 230 (611)
.||.|-=+-.....|.+. .|+|+.+||+|+.+.|.
T Consensus 4 dGp~hy~~~~~~~~g~t~lk~r~L~~~G~~Vi~Ip~~ 40 (58)
T PF08373_consen 4 DGPSHYYRNSNNLTGSTKLKHRHLKALGYKVISIPYY 40 (58)
T ss_pred CCcHHhhCCCCccchHHHHHHHHHHHCCCEEEEecHH
Confidence 455553221122335554 57999999999999865
No 160
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=24.85 E-value=9.4e+02 Score=26.31 Aligned_cols=130 Identities=15% Similarity=0.131 Sum_probs=72.2
Q ss_pred HHHHHHHHHhCCCCCCcceeEEecCceeEeecCHHHHHHHHHHHHHcCCCCCCccCCCceEEEEecCCCCCCCCcchhhh
Q 007251 126 QPVGQAIMKNLPPSEMIESCSVAGPGFVNVVLSKNWMAKNIQKMLVDGIETWAPKLRVKKAVVDFSSPNIAKEMHVGHLR 205 (611)
Q Consensus 126 ~~iA~~l~~~l~~~~~i~~vevagpGfIN~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~kV~Ve~~SpNp~kplHvGHlR 205 (611)
-.|+++|+++-.. + + +-.++=| -......+.+.++-+..........-.+.|+|--+|-. .-.-+.+
T Consensus 171 T~L~~~Iak~~~~-d-v--vVyv~iG-----ERg~Ev~e~l~ef~~l~~~~~~~~~m~rtvlV~nts~~----p~~~R~~ 237 (369)
T cd01134 171 TVIQQSLSKYSNS-D-I--VIYVGCG-----ERGNEMTEVLEEFPELTDPVTGEPLMKRTVLIANTSNM----PVAAREA 237 (369)
T ss_pred HHHHHHHHhCCCC-C-E--EEEEEeC-----CChHHHHHHHHHHHhhccccccCCccceEEEEEECCCC----CHHHHHH
Confidence 4666777765322 2 1 2223323 34445555555543211110011123567887555543 3556788
Q ss_pred HHHHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHH---HhhCCCCCccccchHHHHHHHHHHHhc
Q 007251 206 STIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYL---FEKFPNSEDANETAIGELQEFYRRSKN 271 (611)
Q Consensus 206 saiiGDsLariL~~~Gy~V~r~~yinD~G~Q~~~l~~~~---~~~~~~~~~~~~~~i~~l~~~y~~~~~ 271 (611)
+.-.|=++|.+++..|++|.... +|. +.++.-.+-+ ..+.|..+.|+..--.+|+++|.++..
T Consensus 238 s~yta~tiAEYfrd~G~dVll~~--Ds~-tR~A~A~REIs~~l~E~P~~~GYP~yl~s~La~~yERAG~ 303 (369)
T cd01134 238 SIYTGITIAEYFRDMGYNVALMA--DST-SRWAEALREISGRLEEMPGEEGYPAYLGARLASFYERAGR 303 (369)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEE--cCh-hHHHHHHHHHHHhcCCCCCccCcCccHHHHHHHHHHhccc
Confidence 99999999999999999999873 332 2222222111 123344455666666678888987763
No 161
>KOG2713 consensus Mitochondrial tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=24.68 E-value=27 Score=36.49 Aligned_cols=56 Identities=11% Similarity=0.030 Sum_probs=0.0
Q ss_pred cCCCeEEEEEeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEeeeeEEc---------CCCceeeeccCC
Q 007251 392 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLG---------EDGKRLRTRFSE 454 (611)
Q Consensus 392 ~~~d~iIyV~g~dq~~hf~~l~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~---------~dG~kmSkR~G~ 454 (611)
++.+++= +|.||..|..-...+++.++. .....+.-++-.++.. ...+|||||.+|
T Consensus 154 YksThVP--VGeDQsQHleL~r~lA~~fN~-----~Y~~~~fpvP~~il~~~~~rV~SL~dpekKMSKSd~n 218 (347)
T KOG2713|consen 154 YKSTHVP--VGEDQSQHLELARHLAQAFNK-----TYGTEIFPVPEQILRQSHARVMSLRDPEKKMSKSDPN 218 (347)
T ss_pred hcccccc--CCccHHHHHHHHHHHHHHHhh-----hccCeeecCcHHHHhhhhhhhhhccChhhhcccCCCC
No 162
>TIGR01042 V-ATPase_V1_A V-type (H+)-ATPase V1, A subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=24.56 E-value=5.7e+02 Score=29.71 Aligned_cols=83 Identities=16% Similarity=0.129 Sum_probs=52.1
Q ss_pred CCceEEEEecCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHH---hhCCCCCccccch
Q 007251 182 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLF---EKFPNSEDANETA 258 (611)
Q Consensus 182 ~~~kV~Ve~~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~G~Q~~~l~~~~~---~~~~~~~~~~~~~ 258 (611)
..+.|+|=-+|- ..-.-..++...|=++|.++|..||+|.-.. |-=+.++.-.+-+- .+.|..+.|+..-
T Consensus 289 m~rtvlVa~tsd----~p~~~R~~s~ytg~tiAEYfRD~G~~Vll~~---DS~tR~AeAlREIsl~lgE~P~~eGYPayl 361 (591)
T TIGR01042 289 MKRTTLVANTSN----MPVAAREASIYTGITLAEYFRDMGYNVSMMA---DSTSRWAEALREISGRLAEMPADSGYPAYL 361 (591)
T ss_pred ccceEEEEEcCC----CCHHHHHHHHHHHHHHHHHHHhcCCCEEEEe---cChHHHHHHHHHHHhccCCCCCCCCcCccH
Confidence 457788844333 4445678899999999999999999998765 33333333222111 2234444456555
Q ss_pred HHHHHHHHHHHhc
Q 007251 259 IGELQEFYRRSKN 271 (611)
Q Consensus 259 i~~l~~~y~~~~~ 271 (611)
-..|+++|.++..
T Consensus 362 ~SrLa~l~ERAG~ 374 (591)
T TIGR01042 362 GARLASFYERAGR 374 (591)
T ss_pred HHHHHHHHHhccC
Confidence 5567788887653
No 163
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=24.14 E-value=40 Score=29.33 Aligned_cols=15 Identities=20% Similarity=0.322 Sum_probs=11.7
Q ss_pred cCCCCCCCCcchhhhH
Q 007251 191 SSPNIAKEMHVGHLRS 206 (611)
Q Consensus 191 ~SpNp~kplHvGHlRs 206 (611)
+..++ +|+|.||..-
T Consensus 4 ~~G~F-dp~H~GH~~l 18 (105)
T cd02156 4 FPGEP-GYLHIGHAKL 18 (105)
T ss_pred eCCCC-CCCCHHHHHH
Confidence 35566 8999999974
No 164
>TIGR01043 ATP_syn_A_arch ATP synthase archaeal, A subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=23.39 E-value=8.5e+02 Score=28.33 Aligned_cols=83 Identities=17% Similarity=0.209 Sum_probs=54.7
Q ss_pred CCceEEEEecCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHH---hhCCCCCccccch
Q 007251 182 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLF---EKFPNSEDANETA 258 (611)
Q Consensus 182 ~~~kV~Ve~~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~G~Q~~~l~~~~~---~~~~~~~~~~~~~ 258 (611)
-.++|+| +|+....-.-..++.-.|=++|.++|..||+|.-.. |-=+.++.-.+-+- .+.|..+.|+..-
T Consensus 283 m~RTvlV----anTSn~p~~aR~~s~ytg~TiAEYfRD~G~~Vllm~---DS~sR~AeAlREIs~~lgE~P~~eGYP~yl 355 (578)
T TIGR01043 283 MERTVLI----ANTSNMPVAAREASIYTGITIAEYFRDMGYDVALMA---DSTSRWAEAMREISGRLEEMPGEEGYPAYL 355 (578)
T ss_pred ccceEEE----EECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEe---cChhHHHHHHHHHHHhcCCCCCCCCcCccH
Confidence 3578888 444455666788899999999999999999999754 33233333222111 2334445566655
Q ss_pred HHHHHHHHHHHhc
Q 007251 259 IGELQEFYRRSKN 271 (611)
Q Consensus 259 i~~l~~~y~~~~~ 271 (611)
-..|+++|.++..
T Consensus 356 ~SrLa~~yERAG~ 368 (578)
T TIGR01043 356 ASRLAEFYERAGR 368 (578)
T ss_pred HHHHHHHHHhhcc
Confidence 6678888887664
No 165
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=21.78 E-value=53 Score=34.95 Aligned_cols=39 Identities=15% Similarity=0.119 Sum_probs=25.7
Q ss_pred ecCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCc
Q 007251 190 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 233 (611)
Q Consensus 190 ~~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~ 233 (611)
+|+--|+|.||+||-=+++ -.++.-..+| +..-+.|-|+
T Consensus 9 lSG~~PSG~lHLGny~ga~----~~~v~~q~~~-~~~f~~IaDl 47 (314)
T COG0180 9 LSGIQPSGKLHLGNYLGAI----RNWVLLQEEY-YECFFFIADL 47 (314)
T ss_pred EecCCCCCCcchhHhHHHH----HHHHHHhccc-CceEEEEecH
Confidence 7999999999999975543 3445545554 3334455553
No 166
>COG1656 Uncharacterized conserved protein [Function unknown]
Probab=21.69 E-value=66 Score=30.90 Aligned_cols=22 Identities=23% Similarity=0.250 Sum_probs=17.8
Q ss_pred HHHHHHHHCCCeEEEEeccCCc
Q 007251 212 SLARMLEFSNVEVLRRNHVGDW 233 (611)
Q Consensus 212 sLariL~~~Gy~V~r~~yinD~ 233 (611)
-|||.||.+||++...+...|+
T Consensus 17 ~LARwLRllGydt~~~~~~~d~ 38 (165)
T COG1656 17 KLARWLRLLGYDTVYSSNESDD 38 (165)
T ss_pred HHHHHHHHcCCceeeeccCCcH
Confidence 4899999999999987744443
Done!