Query 007251
Match_columns 611
No_of_seqs 301 out of 2374
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 21:03:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007251.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007251hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1f7u_A Arginyl-tRNA synthetase 100.0 1E-112 5E-117 960.8 41.2 530 58-611 26-571 (607)
2 2zue_A Arginyl-tRNA synthetase 100.0 1E-109 5E-114 942.2 42.8 526 65-611 3-593 (629)
3 1iq0_A Arginyl-tRNA synthetase 100.0 8E-100 3E-104 859.1 44.7 504 67-611 2-556 (592)
4 3fnr_A Arginyl-tRNA synthetase 100.0 2.2E-89 7.5E-94 749.5 43.0 400 155-611 1-420 (464)
5 4dlp_A Aminoacyl-tRNA syntheta 100.0 7.2E-40 2.5E-44 366.7 24.9 330 182-609 23-451 (536)
6 1li5_A Cysrs, cysteinyl-tRNA s 100.0 4.9E-39 1.7E-43 352.8 25.0 308 182-607 19-372 (461)
7 3kfl_A Methionyl-tRNA syntheta 100.0 1.6E-39 5.4E-44 365.7 20.7 330 181-609 23-468 (564)
8 2csx_A Methionyl-tRNA syntheta 100.0 1.2E-36 4.1E-41 337.6 18.6 324 183-609 4-420 (497)
9 3h99_A Methionyl-tRNA syntheta 100.0 3.3E-36 1.1E-40 338.7 20.3 330 181-609 15-472 (560)
10 2d5b_A Methionyl-tRNA syntheta 100.0 3.5E-36 1.2E-40 334.0 18.9 325 183-609 2-422 (500)
11 2x1l_A Methionyl-tRNA syntheta 100.0 2.5E-35 8.6E-40 329.1 23.3 331 181-609 9-440 (524)
12 3c8z_A Cysteinyl-tRNA syntheta 100.0 5.7E-32 2E-36 293.4 25.7 301 183-603 37-390 (414)
13 3tqo_A Cysteinyl-tRNA syntheta 100.0 2.8E-31 9.7E-36 289.2 28.6 303 182-605 22-372 (462)
14 1rqg_A Methionyl-tRNA syntheta 100.0 7.9E-30 2.7E-34 293.9 25.5 326 184-608 2-473 (722)
15 3sp1_A Cysteinyl-tRNA syntheta 100.0 2.1E-29 7.1E-34 275.9 24.7 327 185-602 42-416 (501)
16 3u1f_A Methionyl-tRNA syntheta 99.9 1.2E-26 4.2E-31 259.8 24.1 328 182-607 7-450 (542)
17 1wkb_A Leucyl-tRNA synthetase; 99.9 1.7E-24 5.9E-29 253.1 28.0 136 428-608 634-771 (810)
18 2o5r_A Glutamyl-tRNA synthetas 99.9 3.5E-25 1.2E-29 243.2 17.2 282 183-524 10-334 (481)
19 1irx_A Lysyl-tRNA synthetase; 99.9 9.4E-26 3.2E-30 251.5 9.0 266 161-520 4-324 (523)
20 3al0_C Glutamyl-tRNA(Gln) amid 99.9 2.1E-24 7.2E-29 241.8 15.6 270 158-524 104-430 (592)
21 1ile_A Ilers, isoleucyl-tRNA s 99.9 1.5E-23 5.1E-28 245.2 21.9 170 398-606 547-720 (821)
22 1gax_A Valrs, valyl-tRNA synth 99.9 1.7E-22 5.6E-27 236.2 26.6 158 399-605 485-649 (862)
23 1ffy_A Isoleucyl-tRNA syntheta 99.9 6E-23 2.1E-27 241.6 22.3 164 398-606 551-721 (917)
24 2v0c_A Aminoacyl-tRNA syntheta 99.9 1.6E-21 5.5E-26 228.6 25.8 123 446-606 636-760 (878)
25 4arc_A Leucine--tRNA ligase; l 99.9 2E-20 6.9E-25 218.2 27.6 166 398-605 546-760 (880)
26 3afh_A Glutamyl-tRNA synthetas 99.8 1.6E-20 5.3E-25 206.2 18.3 246 184-524 24-326 (488)
27 3gdz_A Arginyl-tRNA synthetase 99.8 4.5E-21 1.5E-25 169.8 11.1 101 66-173 5-106 (109)
28 1nzj_A Hypothetical protein YA 99.8 3.2E-20 1.1E-24 192.1 9.7 189 190-464 9-244 (298)
29 1wz2_A Leucyl-tRNA synthetase; 99.8 3.6E-17 1.2E-21 194.0 27.5 136 428-608 634-771 (967)
30 4g6z_A Glutamate-tRNA ligase; 99.7 2E-17 6.8E-22 180.8 18.1 246 184-524 24-335 (490)
31 2cfo_A Glutamyl-tRNA synthetas 99.7 2.4E-17 8.3E-22 181.2 16.0 241 191-524 6-320 (492)
32 2ja2_A Glutamyl-tRNA synthetas 99.7 7.1E-17 2.4E-21 177.3 17.5 139 364-524 183-329 (498)
33 1j09_A Glutamyl-tRNA synthetas 99.7 1E-16 3.4E-21 175.3 17.4 138 364-523 174-314 (468)
34 4gri_A Glutamate--tRNA ligase; 99.6 3.6E-15 1.2E-19 165.2 17.0 139 364-524 204-345 (512)
35 3aii_A Glutamyl-tRNA synthetas 99.6 4.2E-15 1.4E-19 163.9 8.8 227 183-521 94-391 (553)
36 1qtq_A GLNRS, protein (glutami 99.4 4.5E-13 1.5E-17 147.8 13.8 212 160-465 9-300 (553)
37 2hz7_A Glutaminyl-tRNA synthet 99.4 1.4E-12 4.8E-17 149.7 13.7 213 159-465 48-340 (851)
38 2cyb_A Tyrosyl-tRNA synthetase 98.3 2.3E-06 7.7E-11 89.4 9.7 62 392-463 169-230 (323)
39 2dlc_X Tyrosyl-tRNA synthetase 97.9 1.8E-05 6.2E-10 84.8 9.3 63 392-464 181-245 (394)
40 1n3l_A Tyrosyl-tRNA synthetase 97.9 1.5E-05 5E-10 84.8 8.1 60 392-461 177-237 (372)
41 2zp1_A Tyrosyl-tRNA synthetase 97.4 0.00072 2.5E-08 70.2 10.7 60 392-465 162-222 (314)
42 3a04_A Tryptophanyl-tRNA synth 96.8 0.0012 4.1E-08 70.1 6.2 59 398-460 211-270 (372)
43 3p0j_A Tyrosyl-tRNA synthetase 96.4 0.0095 3.3E-07 67.9 10.7 64 392-464 182-248 (690)
44 2pid_A Tyrosyl-tRNA synthetase 95.2 0.0078 2.7E-07 63.4 2.8 59 392-460 209-267 (356)
45 2yxn_A Tyrosyl-tRNA synthetase 95.2 0.0066 2.3E-07 63.1 2.1 58 393-460 191-248 (322)
46 2ip1_A Tryptophanyl-tRNA synth 94.8 0.037 1.3E-06 59.7 6.8 63 393-465 249-314 (432)
47 2jan_A Tyrosyl-tRNA synthetase 94.4 0.018 6E-07 62.1 3.2 59 392-460 186-245 (432)
48 2g36_A Tryptophanyl-tRNA synth 94.2 0.015 5E-07 60.9 1.8 66 392-460 152-218 (340)
49 1h3f_A Tyrosyl-tRNA synthetase 94.0 0.038 1.3E-06 59.6 4.8 58 393-460 187-245 (432)
50 1r6t_A Tryptophanyl-tRNA synth 93.9 0.046 1.6E-06 59.7 5.2 59 401-467 309-370 (477)
51 1jil_A Tyrrs, tyrosyl-tRNA syn 93.7 0.041 1.4E-06 59.2 4.3 59 392-460 185-244 (420)
52 2el7_A Tryptophanyl-tRNA synth 93.7 0.025 8.5E-07 59.1 2.5 62 392-461 140-209 (337)
53 2ts1_A Tyrosyl-tRNA synthetase 93.6 0.037 1.3E-06 59.5 3.7 59 392-460 184-243 (419)
54 1r6u_A Tryptophanyl-tRNA synth 93.6 0.051 1.8E-06 58.6 4.7 58 401-466 262-322 (437)
55 3tzl_A Tryptophanyl-tRNA synth 93.3 0.016 5.4E-07 60.2 0.2 66 392-460 138-205 (322)
56 2cya_A Tyrosyl-tRNA synthetase 92.9 0.046 1.6E-06 57.7 3.1 62 392-463 176-255 (364)
57 1yi8_B Tryptophanyl-tRNA synth 92.7 0.044 1.5E-06 57.6 2.5 67 392-461 161-229 (351)
58 3i05_A Tryptophanyl-tRNA synth 92.3 0.049 1.7E-06 58.0 2.3 57 400-464 229-287 (395)
59 3hv0_A Tryptophanyl-tRNA synth 91.6 0.078 2.7E-06 56.4 2.8 57 400-464 225-284 (393)
60 3hzr_A Tryptophanyl-tRNA synth 91.3 0.15 5E-06 54.2 4.5 56 401-464 230-287 (386)
61 3vgj_A Tyrosyl-tRNA synthetase 91.3 0.14 4.8E-06 54.1 4.4 64 392-464 199-265 (373)
62 2yy5_A Tryptophanyl-tRNA synth 91.1 0.064 2.2E-06 56.2 1.5 70 392-464 146-222 (348)
63 1y42_X Tyrosyl-tRNA synthetase 91.1 0.077 2.6E-06 56.5 2.1 65 392-460 231-306 (392)
64 1i6k_A TRPRS, tryptophanyl-tRN 91.0 0.11 3.7E-06 54.0 3.1 70 392-464 136-212 (328)
65 3tze_A Tryptophanyl-tRNA synth 90.9 0.21 7.1E-06 53.3 5.3 57 400-464 248-307 (406)
66 3jxe_A Tryptophanyl-tRNA synth 90.5 0.1 3.5E-06 55.5 2.4 57 400-464 212-271 (392)
67 2j5b_A Tyrosyl-tRNA synthetase 90.4 0.16 5.6E-06 53.1 3.8 63 393-465 186-251 (348)
68 2cyc_A Tyrosyl-tRNA synthetase 87.6 0.23 7.8E-06 52.5 2.6 69 392-464 179-269 (375)
69 3foc_A Tryptophanyl-tRNA synth 87.4 0.23 7.7E-06 53.7 2.4 53 400-460 292-347 (451)
70 2el7_A Tryptophanyl-tRNA synth 82.5 0.47 1.6E-05 49.4 2.0 39 190-233 5-44 (337)
71 2g36_A Tryptophanyl-tRNA synth 80.9 0.92 3.1E-05 47.2 3.5 39 190-233 16-54 (340)
72 3prh_A Tryptophanyl-tRNA synth 77.8 0.46 1.6E-05 50.4 0.1 70 392-464 170-246 (388)
73 1i6k_A TRPRS, tryptophanyl-tRN 76.3 1 3.4E-05 46.7 2.1 38 190-233 5-42 (328)
74 3sz3_A Tryptophanyl-tRNA synth 75.3 0.68 2.3E-05 48.3 0.5 71 392-464 142-221 (341)
75 3n9i_A Tryptophanyl-tRNA synth 74.5 1.1 3.9E-05 46.6 2.0 68 392-464 151-227 (346)
76 3hzr_A Tryptophanyl-tRNA synth 74.4 2.5 8.7E-05 44.6 4.7 44 184-234 81-125 (386)
77 2cya_A Tyrosyl-tRNA synthetase 73.2 2.3 7.7E-05 44.7 3.9 38 190-233 39-76 (364)
78 1yi8_B Tryptophanyl-tRNA synth 68.5 1.6 5.6E-05 45.5 1.5 37 190-234 26-64 (351)
79 3tzl_A Tryptophanyl-tRNA synth 67.1 1.6 5.3E-05 45.1 1.0 38 190-233 7-44 (322)
80 2pid_A Tyrosyl-tRNA synthetase 64.9 4.6 0.00016 42.2 4.1 42 186-234 47-89 (356)
81 2ts1_A Tyrosyl-tRNA synthetase 61.3 6.5 0.00022 42.0 4.5 38 190-233 34-72 (419)
82 3jxe_A Tryptophanyl-tRNA synth 61.1 4.8 0.00016 42.6 3.4 41 186-233 74-115 (392)
83 2yxn_A Tyrosyl-tRNA synthetase 60.7 6 0.00021 40.7 4.0 39 190-234 37-76 (322)
84 2yy5_A Tryptophanyl-tRNA synth 60.0 2.7 9.1E-05 43.8 1.2 38 190-233 8-45 (348)
85 1jil_A Tyrrs, tyrosyl-tRNA syn 58.7 6.8 0.00023 41.8 4.1 38 190-233 36-74 (420)
86 1y42_X Tyrosyl-tRNA synthetase 58.3 6.5 0.00022 41.6 3.8 38 190-233 68-106 (392)
87 3vgj_A Tyrosyl-tRNA synthetase 56.1 8.2 0.00028 40.5 4.1 38 190-233 60-98 (373)
88 2j5b_A Tyrosyl-tRNA synthetase 55.1 10 0.00035 39.3 4.7 39 190-233 44-82 (348)
89 3sz3_A Tryptophanyl-tRNA synth 54.3 3.8 0.00013 42.6 1.2 38 190-233 10-47 (341)
90 1h3f_A Tyrosyl-tRNA synthetase 53.9 9.9 0.00034 40.7 4.4 42 190-237 41-83 (432)
91 3i05_A Tryptophanyl-tRNA synth 50.9 11 0.00037 39.9 4.1 44 184-233 77-121 (395)
92 3hv0_A Tryptophanyl-tRNA synth 47.5 11 0.00039 39.7 3.6 44 186-235 75-119 (393)
93 3prh_A Tryptophanyl-tRNA synth 47.2 6.5 0.00022 41.5 1.6 38 190-233 39-76 (388)
94 2jan_A Tyrosyl-tRNA synthetase 45.9 16 0.00055 39.0 4.5 40 190-235 36-76 (432)
95 3foc_A Tryptophanyl-tRNA synth 45.7 17 0.00059 39.1 4.6 44 184-234 90-135 (451)
96 1iio_A Conserved hypothetical 45.2 4.3 0.00015 33.3 -0.1 70 64-135 5-81 (84)
97 3n9i_A Tryptophanyl-tRNA synth 44.2 6.7 0.00023 40.8 1.1 37 190-233 19-56 (346)
98 3tze_A Tryptophanyl-tRNA synth 43.3 19 0.00064 38.2 4.4 43 184-233 100-144 (406)
99 1r6t_A Tryptophanyl-tRNA synth 43.1 20 0.00067 38.9 4.7 44 184-234 154-199 (477)
100 2ip1_A Tryptophanyl-tRNA synth 39.5 21 0.00072 38.1 4.2 42 186-233 103-145 (432)
101 1r6u_A Tryptophanyl-tRNA synth 39.4 23 0.0008 37.9 4.5 45 184-235 107-153 (437)
102 2cyc_A Tyrosyl-tRNA synthetase 36.5 18 0.00063 37.8 3.0 39 190-233 37-75 (375)
103 2vo1_A CTP synthase 1; pyrimid 27.2 46 0.0016 33.3 3.9 31 205-235 37-71 (295)
104 2c5m_A CTP synthase; cytidine 26.8 32 0.0011 34.2 2.7 32 204-235 36-71 (294)
105 2wh6_B BCL-2-like protein 11; 23.1 55 0.0019 20.3 2.2 18 589-606 7-24 (26)
106 3nva_A CTP synthase; rossman f 22.6 59 0.002 35.6 4.1 32 204-235 16-51 (535)
107 1qm9_A Polypyrimidine tract-bi 21.6 1.1E+02 0.0036 27.8 5.2 35 196-230 120-154 (198)
108 3r6u_A Choline-binding protein 21.5 57 0.002 32.5 3.5 41 197-237 12-56 (284)
No 1
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=100.00 E-value=1.4e-112 Score=960.81 Aligned_cols=530 Identities=28% Similarity=0.430 Sum_probs=452.7
Q ss_pred cchhhhHHhHHHHHHHHHHHHHHhcCCCCCCCccccccc-CCCCcccccchhHHHHHHhcCCCCCCCChHHHHHHHHHhC
Q 007251 58 ATEEENTGNVKRELEKVFDLALKATVPNETDVRPLIAAC-TAKFGDYQCNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNL 136 (611)
Q Consensus 58 ~~~~~~~~~~~~~~~~~i~~a~~~~~~~~~~~~~~v~~~-~~~~GD~~~n~A~~lak~~k~~~~~~~~P~~iA~~l~~~l 136 (611)
.+..++...+++.+.+.+.+++. .+ .....+.+++| +++||||+||+||. |.+| +||++||++|+++|
T Consensus 26 ~~~~~~~~~~~~~i~~~l~~~~~--~~-~~~~~~~v~~~~~~~~GD~a~~~~~~--k~~~------~~P~~iA~~i~~~l 94 (607)
T 1f7u_A 26 HPDVNIVDLMRNYISQELSKISG--VD-SSLIFPALEWTNTMERGDLLIPIPRL--RIKG------ANPKDLAVQWAEKF 94 (607)
T ss_dssp CTTTCHHHHHHHHHHHHHHHHHC--CC-HHHHGGGCEECSSGGGCSEEEEGGGG--CCTT------CCHHHHHHHHHHTC
T ss_pred CccccHHHHHHHHHHHHHHHHhC--CC-ccccccceeCCCCCCCCchhhHHHHH--HhcC------CCHHHHHHHHHHhc
Confidence 34444454444555544444432 11 01123356666 78999999998763 7777 99999999999999
Q ss_pred CCCCCcceeEEecCceeEeecCHHHHHHH-HHHHHHcCCC-CCCccCCCceEEEEecCCCCCCCCcchhhhHHHHHHHHH
Q 007251 137 PPSEMIESCSVAGPGFVNVVLSKNWMAKN-IQKMLVDGIE-TWAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLA 214 (611)
Q Consensus 137 ~~~~~i~~vevagpGfIN~~l~~~~~~~~-~~~~l~~~~~-~~~~~~~~~kV~Ve~~SpNp~kplHvGHlRsaiiGDsLa 214 (611)
+.++.|++++++|| ||||+|+++++.+. +..++..++. |..+.+.+++|+||||||||||||||||+||+||||+|+
T Consensus 95 ~~~~~i~~ve~ag~-fiN~~l~~~~~~~~~~~~i~~~~~~~G~~~~~~~~~V~ve~~spN~~~plHvGHlRs~iiGD~la 173 (607)
T 1f7u_A 95 PCGDFLEKVEANGP-FIQFFFNPQFLAKLVIPDILTRKEDYGSCKLVENKKVIIEFSSPNIAKPFHAGHLRSTIIGGFLA 173 (607)
T ss_dssp CCTTTEEEEEEETT-EEEEEECHHHHHHHHHHHHHHHGGGTTCCCCSSCCEEEEECCCCBTTSCCBGGGHHHHHHHHHHH
T ss_pred cccCceeEEEEcCC-EEEEEECHHHHHHHHHHHHHhhhhhcCCCcccCCCeEEEEecCCCCCCCCccchHHHHHHHHHHH
Confidence 87778999999996 99999999999975 4556666655 333446789999999999999999999999999999999
Q ss_pred HHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCccccchHHHHHHHHHHHhcccCCC-------hHHHHHHHHHH
Q 007251 215 RMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSD-------PAFKERAQQAV 287 (611)
Q Consensus 215 riL~~~Gy~V~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~~~~~~~d-------~~~~~~a~~~~ 287 (611)
|+|+++||+|+++|||||||+||++|+.+ +.++++.+....+++.++.++|+++++.++++ +.+.++|++.+
T Consensus 174 Ril~~~G~~V~~~~~i~D~G~Q~~~l~~~-~~~~g~~~~~~~~~i~~l~~~Y~~~~~~~~~~~e~g~~~~~i~~~A~~~~ 252 (607)
T 1f7u_A 174 NLYEKLGWEVIRMNYLGDWGKQFGLLAVG-FERYGNEEALVKDPIHHLFDVYVRINKDIEEEGDSIPLEQSTNGKAREYF 252 (607)
T ss_dssp HHHHHTTCEEEEEEEEBCCSHHHHHHHHH-HHHHCCHHHHHHCHHHHHHHHHHHHHHHHHHSTTSSCHHHHSSHHHHHHH
T ss_pred HHHHHcCCCeeEEEeecCcchHHHHHHHH-HHHhCchhhccCCChHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHH
Confidence 99999999999999999999999999987 45566533333457889999999999998888 88999999999
Q ss_pred HHHccCChHHHHHHHHHHHHHHHHHHHHHHhcCCee-eeccccccc-CcHHHHHHHHHhCCCceeecccEEEecc--CCC
Q 007251 288 VRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDL-EEKGESFYN-PYIPGVIDELSKQGLVEESQGARVIFIE--GVN 363 (611)
Q Consensus 288 ~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~LgV~f-~~~~Es~y~-~~v~~vi~~L~~~G~~~e~dGa~~~~~~--g~~ 363 (611)
++||+||+++.++|++++++++++|+++|++|||+| .|.+||.|. +.++++++.|+++|++|+++|++||+++ |++
T Consensus 253 ~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~L~V~fD~~~~ES~~~~~~~~~vi~~L~~kG~~ye~dGa~~~~~~~~g~~ 332 (607)
T 1f7u_A 253 KRMEDGDEEALKIWKRFREFSIEKYIDTYARLNIKYDVYSGESQVSKESMLKAIDLFKEKGLTHEDKGAVLIDLTKFNKK 332 (607)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSEEEEGGGCCHHHHHHHHHHHHHTTCEEEETTEEEEEGGGTCTT
T ss_pred HHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcceeecCcchhhhhHHHHHHHHHHhCCCEEEECCcEEEEecccCCC
Confidence 999999999999999999999999999999999999 567899887 7899999999999999999999999998 445
Q ss_pred CC-eEEEccCCcccccCcchhHHHhhhhccCCCeEEEEEeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEeeeeEEc
Q 007251 364 IP-LIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLG 442 (611)
Q Consensus 364 ~d-~Vl~ksDG~~tY~t~DiA~~~~r~~~~~~d~iIyV~g~dq~~hf~~l~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~ 442 (611)
.| +|++||||+++|+|+|||||+||+..+++|++|||||++|++||+|++++++++|+. ++..|.|++||+|.
T Consensus 333 ~d~~v~~KsDG~~~Y~t~Dia~~~~k~~~~~~d~~IyV~g~~q~~~f~q~~~~~~~lG~~-----~~~~~~Hv~fg~v~- 406 (607)
T 1f7u_A 333 LGKAIVQKSDGTTLYLTRDVGAAMDRYEKYHFDKMIYVIASQQDLHAAQFFEILKQMGFE-----WAKDLQHVNFGMVQ- 406 (607)
T ss_dssp TCEEEEECTTSCCCHHHHHHHHHHHHHHHHCCSEEEEECCGGGHHHHHHHHHHHHHTTCG-----GGGGEEEECCCCEE-
T ss_pred CCceeEeccCCCcCCCCCcHHHHHHHHhhcCCCcEEEEEcChHhhHHHHHHHHHHHcCCC-----cCcEEEEecccccc-
Confidence 55 899999999999999999999999778999999999999999999999999999993 45679999999986
Q ss_pred CCCceeeeccCCcccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhcCcchhhhhhccCCCCCcccccccccccc
Q 007251 443 EDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLND 522 (611)
Q Consensus 443 ~dG~kmSkR~G~~v~l~dLldea~~~a~~~~~~r~~~~~~~~~e~~~~a~~vg~~avRy~~L~~~~~~~~~Fd~d~~~~~ 522 (611)
|||||+||+|+|+||++++..+|...+.+ ++..-...+|.+++|++||++|+||++|+.++.++++||||+++++
T Consensus 407 ----kMSkR~G~~v~L~dLlde~~~~a~~~~~~-~~~~~~~~~e~~~~a~~vgi~avry~~Ls~~~~s~~~Fd~d~~~~~ 481 (607)
T 1f7u_A 407 ----GMSTRKGTVVFLDNILEETKEKMHEVMKK-NENKYAQIEHPEEVADLVGISAVMIQDMQGKRINNYEFKWERMLSF 481 (607)
T ss_dssp ----SCCGGGTCCCBHHHHHHHHHHHHHHHHHT-CHHHHTTCSCHHHHHHHHHHHHHHHHHHSSCTTCCEECCHHHHHCC
T ss_pred ----cccCCCCCcccHHHHHHHHHHHHHHHHHh-CcccccchhhHHHHHHHHHHHHHHHHHhccCCCCCcccCHHHHHHH
Confidence 49999999999999999999988766552 1110011357889999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHHHHHHHh-CCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Q 007251 523 KGNTAVYLLYAHARICSIIRKS-GKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYF 601 (611)
Q Consensus 523 ~gnt~~ylqYa~aRi~SIlrKa-~~~~~~~~~~~~~~l~~~~e~~L~~~l~~fp~~v~~a~~~~~P~~l~~yL~~La~~f 601 (611)
+|||||||||||||+|||+||+ +.....+...+...+.++.|++|++.|.+||++|++|+++++||++|+||++||+.|
T Consensus 482 ~g~t~pylqYa~aRi~SIlrka~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~fp~vv~~a~~~~~P~~l~~Yl~~La~~f 561 (607)
T 1f7u_A 482 EGDTGPYLQYAHSRLRSVERNASGITQEKWINADFSLLKEPAAKLLIRLLGQYPDVLRNAIKTHEPTTVVTYLFKLTHQV 561 (607)
T ss_dssp SSSSHHHHHHHHHHHHHHHHHTTTSCHHHHTTSCGGGCCSHHHHHHHHHHTTHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred hccchHHHHHHHHHHHHHHHHhcCCCcccccccchhhcCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 9999999999999999999998 433221111122336689999999999999999999999999999999999999999
Q ss_pred hchhhcccCC
Q 007251 602 TRFYSNCQVQ 611 (611)
Q Consensus 602 n~fY~~~~Vl 611 (611)
|+||++||||
T Consensus 562 n~fY~~~~Vl 571 (607)
T 1f7u_A 562 SSCYDVLWVA 571 (607)
T ss_dssp HHHHHHCCST
T ss_pred HHHHHhCCCC
Confidence 9999999997
No 2
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=100.00 E-value=1.4e-109 Score=942.21 Aligned_cols=526 Identities=24% Similarity=0.340 Sum_probs=456.7
Q ss_pred HhHHHHHHHHHHHHHHhcCCCCCCCccccccc-CCCCcccccchhHHHHHHhcCCCCCCCChHHHHHHHHHhCCC--CCC
Q 007251 65 GNVKRELEKVFDLALKATVPNETDVRPLIAAC-TAKFGDYQCNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPP--SEM 141 (611)
Q Consensus 65 ~~~~~~~~~~i~~a~~~~~~~~~~~~~~v~~~-~~~~GD~~~n~A~~lak~~k~~~~~~~~P~~iA~~l~~~l~~--~~~ 141 (611)
+++++.+.+.+.+++..... .......+++| +++|||||||+||.|||.+| ++|++||++|+++|+. ++.
T Consensus 3 ~~~~~~i~~~~~~a~~~~~~-~~~~~~~v~~~~~~~~GD~~~n~a~~lak~~~------~~P~~iA~~i~~~l~~~~~~~ 75 (629)
T 2zue_A 3 MEIRESVKERIEEIIKEIAP-QWEGEIELKETPDPKLGDFGTPIAFKLAKLLK------RPPIEIAEKIVEKLKLNLPEG 75 (629)
T ss_dssp CTTHHHHHHHHHHHHHHHCT-TCCCCCCCEECSSGGGCSEEECHHHHHHHHHT------SCHHHHHHHHHHHHTTSCCTT
T ss_pred HHHHHHHHHHHHHHHHhcCc-cccccceeeCCCCCCCCceeHHHHHHHHHHcC------CCHHHHHHHHHHHhhhccCCC
Confidence 34567777777777775432 11223346666 78999999999999999999 9999999999999976 678
Q ss_pred cceeEEecCceeEeecCHHHHH-HHHHHHHHcCCC-CCCccCCCceEEEEecCCCCCCCCcchhhhHHHHHHHHHHHHHH
Q 007251 142 IESCSVAGPGFVNVVLSKNWMA-KNIQKMLVDGIE-TWAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEF 219 (611)
Q Consensus 142 i~~vevagpGfIN~~l~~~~~~-~~~~~~l~~~~~-~~~~~~~~~kV~Ve~~SpNp~kplHvGHlRsaiiGDsLariL~~ 219 (611)
|++|+|+| |||||+|+++++. ..+..++..++. |..+.+++++|+||||||||||||||||+||+||||+|||+|++
T Consensus 76 i~~vevag-GfiN~~l~~~~~~~~~~~~i~~~~~~yG~~~~~~~~~V~ve~~spN~~~~~HiGH~Rs~iigD~laR~l~~ 154 (629)
T 2zue_A 76 IKDVKAVN-GYINVFIDYPHFARILINDILAKGDRFGSSEIGKGKKVIVEHTSVNPTKPLHMGHARNAILGDVMARILRF 154 (629)
T ss_dssp EEEEEEET-TEEEEEECHHHHHHHHHHHHHHHGGGTTCCCTTTTCEEEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEcC-CEEEEEECHHHHHHHHHHHHHhcchhcCCCccCCCCEEEEEeeCCCCCCCCccchhHHHHHHHHHHHHHHH
Confidence 99999999 9999999999555 455667766655 33344678999999999999999999999999999999999999
Q ss_pred CCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCcc----------ccchH-HHHHHHHHHHhcccCCChHHHHHHHHHHH
Q 007251 220 SNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDA----------NETAI-GELQEFYRRSKNRFDSDPAFKERAQQAVV 288 (611)
Q Consensus 220 ~Gy~V~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~----------~~~~i-~~l~~~y~~~~~~~~~d~~~~~~a~~~~~ 288 (611)
+||+|+++|||||||+||++++.+..+ ++.++.. +++++ ..+.+.|+++.+.++.+|+|++++++.+.
T Consensus 155 ~G~~V~~~~~i~D~G~Q~~~l~~~~~~-~g~~~~~~~~~~~~~~~~~~~~d~~~g~~y~~~a~~~~~~~~~~~~~~~~~~ 233 (629)
T 2zue_A 155 LGYEVEVQNYIDDLGIQFAQVYWGYLR-LKEEFERIMNELRERGLKDNPIDHALGLLYVEVNRRLEDNPELENEIRDIMK 233 (629)
T ss_dssp TTCEEEEEEEECTTSHHHHHHHHHHHH-CHHHHHHHHHHHHHHTSCSCCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred cCCCceEEecccchhHHHHHHHHHHHH-hCCcchhhhhhhcccccccCcchhhHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 999999999999999999999876542 3321111 23445 45678899988888889999999999999
Q ss_pred HHccCChHHHHHHHHHHHHHHHHHHHHHHhcCCeee-ecccccc--cCcHHHHHHHHHhCCCce-----eecccEEEecc
Q 007251 289 RLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLE-EKGESFY--NPYIPGVIDELSKQGLVE-----ESQGARVIFIE 360 (611)
Q Consensus 289 ~le~gd~e~~~~w~~~~~~~~~~~~~~~~~LgV~f~-~~~Es~y--~~~v~~vi~~L~~~G~~~-----e~dGa~~~~~~ 360 (611)
++|+|| .+|+.+|+.++++|+++|++|||+|| |.+||.| .+.++++++.|+++|++| +++|++||+++
T Consensus 234 ~~e~gd----~~~~~~~~~~~~~f~~~~~~L~I~~D~~~~es~~~~~~~v~~vi~~L~~kG~~y~~~~ge~~Ga~~v~~~ 309 (629)
T 2zue_A 234 KLESGE----LYGRKLAEEVVRAQMVTTYKLGVKYDLLVWESDIVRRKLFEIALELLSKNENFYIPSDGKYRGAFVMDLR 309 (629)
T ss_dssp HHHHSS----SCCHHHHHHHHHHHHHHHHHHTCCCSEEEEHHHHHHTTHHHHHHHHHHTSTTEECCSSSTTTTCEEEECT
T ss_pred hccccc----HHHHHHHHHHHHHHHHHHHHcCCccccccCcCccccchhHHHHHHHHHHCCCccccccCCcCCcEEEECc
Confidence 999998 89999999999999999999999994 6789988 899999999999999999 89999999998
Q ss_pred --CCCCC---eEEEccCCcccccCcchhHHHhh---------hhcc-------------------CCCeEEEEEeCCccc
Q 007251 361 --GVNIP---LIIVKSDGGFNYASTDLAALWYR---------LNEE-------------------KAEWIIYVTDVGQQL 407 (611)
Q Consensus 361 --g~~~d---~Vl~ksDG~~tY~t~DiA~~~~r---------~~~~-------------------~~d~iIyV~g~dq~~ 407 (611)
|++++ +|++||||+++|+++|+||++|| ...+ ++|++|||||.+|+.
T Consensus 310 ~~g~~~~~~~~v~~ksdG~~~Y~~~Diay~~~K~~ll~~~fr~~~~~~~~~~~~~wG~~~Pg~~~~~d~~IyV~g~~q~~ 389 (629)
T 2zue_A 310 KLFPDMKNPILVLRRSDGTATYTGKDIAYHLWKFGKIDVDLLYKEWDSTTWTTAPDGKSMPNKFGNANIVINVIGAEQKH 389 (629)
T ss_dssp TTCSSSSCCEEEEECTTSCBCHHHHHHHHHHHHTTCSCCCCEEEECSSSCEEEEEEEEECTTSSCCCSEEEEEEEGGGHH
T ss_pred ccCCccccCceEEEecCCccccchhhHHHHHHHhhcccccccCCcccccccccCCCCCCCCCccCCCCcEEEEEeCcHhh
Confidence 56666 89999999999999999999994 5444 899999999999999
Q ss_pred cHHHHHHHHHHcCCCCCCCCC-CCcEEEEeeeeEEcCCCceeeeccC--CcccHHHHHHHHHHHHHHHHHHhcCCCCCCH
Q 007251 408 HFDMVFSAAKRAGWLSADDST-YPKASHVGFGLVLGEDGKRLRTRFS--EVVRLVDLLDEAKNRSKAVLIERGKDKEWTE 484 (611)
Q Consensus 408 hf~~l~~~~~~lG~~~~~~~~-~~~~~Hv~~g~V~~~dG~kmSkR~G--~~v~l~dLldea~~~a~~~~~~r~~~~~~~~ 484 (611)
||+|++++++++|+. + +..+.|++||||+.+ |+|||||+| |+|+|+||+++++++|.+.+.++++ ++++
T Consensus 390 ~~~~l~~~l~~lG~~-----~~~~~~~h~~~g~V~~~-~~KMSkr~G~~n~v~l~dLl~e~~~~a~~~~~~~~~--~~~~ 461 (629)
T 2zue_A 390 PQLAIKYALQLLGFE-----DAAANLYHLAYEHVERP-EGKFSGRKGTWVGFTVDEVIQEAVKRARELIEEKNP--ALSD 461 (629)
T ss_dssp HHHHHHHHHHHTTCH-----HHHHTEEEEEECCEEBT-TBCCCTTTTTTTTCBHHHHHHHHHHHHHHHHHHHCT--TSCH
T ss_pred HHHHHHHHHHHcCCC-----CCCCeEEEEEeeeEEcC-CCcccCCCCCCCeeeHHHHHHHHHHHHHHHHHhcCc--ccch
Confidence 999999999999994 3 346899999999865 668999999 9999999999999999999999865 5899
Q ss_pred HHHHHHHhhcCcchhhhhhccCCCCCcccccccccccccCChHHHHHHHHHHHHHHHHHhCCChh-----hhhhcCCCCC
Q 007251 485 EELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHARICSIIRKSGKDIE-----ELKKTGSLVL 559 (611)
Q Consensus 485 ~e~~~~a~~vg~~avRy~~L~~~~~~~~~Fd~d~~~~~~gnt~~ylqYa~aRi~SIlrKa~~~~~-----~~~~~~~~~l 559 (611)
++.+++|+.+|++|+|||+|+.++.++++|||+.+++++|||+||+||||||+|||+||++.... ..+......+
T Consensus 462 ~~~~~~a~~vg~~AvRy~~L~~~~~~~~~Fd~d~~~~~~~~t~~ylqYa~aRi~Silrka~~~~~~~~~~~~~~~~~~~l 541 (629)
T 2zue_A 462 EEKAEVAEKVGIGAIRYNLIKYSPDKKIIFRWEDVLNFEGESAPYIQYAHARCSSILRKAEEEGIKVDPETLFKNADFTK 541 (629)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCTTSCEECCHHHHSCCSSSSHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHCCCSS
T ss_pred hhHHHHHHhcChhHhhHHHHhcCCCCCCeecHHHHHHHhcCchHHHHHHHHHHHHHHHhhhccccccccccccccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999853210 0001111235
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhchhhcccCC
Q 007251 560 DHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNCQVQ 611 (611)
Q Consensus 560 ~~~~e~~L~~~l~~fp~~v~~a~~~~~P~~l~~yL~~La~~fn~fY~~~~Vl 611 (611)
.++.|++|++.|.+||++|++|+++++||++|+||++||..||+||++||||
T Consensus 542 ~~~~e~~L~~~l~~fp~~v~~a~~~~~p~~l~~yl~~La~~fn~fy~~~~vl 593 (629)
T 2zue_A 542 LSERERELVIMLSKFPRIVEQAGKDVKPHLIAWFANELASLFNKFYMDHPVL 593 (629)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHHHHHCCST
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 6899999999999999999999999999999999999999999999999997
No 3
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=100.00 E-value=8.2e-100 Score=859.13 Aligned_cols=504 Identities=27% Similarity=0.360 Sum_probs=434.6
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCccccccc-CCCCcccccchhHHHHHHhcCCCCCCCChHHHHHHHHHhCCCCCCccee
Q 007251 67 VKRELEKVFDLALKATVPNETDVRPLIAAC-TAKFGDYQCNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPPSEMIESC 145 (611)
Q Consensus 67 ~~~~~~~~i~~a~~~~~~~~~~~~~~v~~~-~~~~GD~~~n~A~~lak~~k~~~~~~~~P~~iA~~l~~~l~~~~~i~~v 145 (611)
+++.+.+.|.+++..... . ....+++| +++|||||||+ |.|||.+| ++|++||++|+++|+.++.|++|
T Consensus 2 ~~~~~~~~~~~~~~~~~~-~--~~~~v~~~~~~~~gD~~~~~-~~lak~~~------~~P~~iA~~i~~~l~~~~~~~~~ 71 (592)
T 1iq0_A 2 LRRALEEAIAQALKEMGV-P--VRLKVARAPKDKPGDYGVPL-FALAKELR------KPPQAIAQELKDRLPLPEFVEEA 71 (592)
T ss_dssp CHHHHHHHHHHHHHTTSC-C--CCCCCEECSTTSSCSEEEEC-SHHHHHTT------SCHHHHHHHHHHTCCCCTTEEEE
T ss_pred hHHHHHHHHHHHHHhcCC-C--ccceeeCCCCCCCCcchhhH-HHHHHHcC------CCHHHHHHHHHHhccccCcEEEE
Confidence 346677777777775421 1 23346666 78999999995 99999999 99999999999999876789999
Q ss_pred EEecCceeEeecCHHHHHHHHH-HHHHcCCCCCCccCCCceEEEEecCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCeE
Q 007251 146 SVAGPGFVNVVLSKNWMAKNIQ-KMLVDGIETWAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEV 224 (611)
Q Consensus 146 evagpGfIN~~l~~~~~~~~~~-~~l~~~~~~~~~~~~~~kV~Ve~~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~V 224 (611)
+|+| |||||+|+++++...+. .++..+..+ + +|+||||||||+|||||||+|++|+||+|||+|+++||+|
T Consensus 72 ~~~g-gfiN~~l~~~~~~~~~~~~~~~~~~~~----g---~v~ve~~spn~~~~~HiGH~R~~iigD~laR~l~~~G~~V 143 (592)
T 1iq0_A 72 VPVG-GYLNFRLRTEALLREALRPKAPFPRRP----G---VVLVEHTSVNPNKELHVGHLRNIALGDAIARILAYAGREV 143 (592)
T ss_dssp EEET-TEEEEEECHHHHHHHHHSCCCCCCCEE----E---EEEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTEEE
T ss_pred EEcC-CEEEEEECHHHHHHHHHHHHHhcCccc----C---eEEEEeeCCCCCCCCcchHHHHHHHHHHHHHHHHHcCCce
Confidence 9999 99999999997666654 333333221 1 8999999999999999999999999999999999999999
Q ss_pred EEEeccCCchhHHHHHHHHHHhhCCCCCccccchHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHH
Q 007251 225 LRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQI 304 (611)
Q Consensus 225 ~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~~~~~~~d~~~~~~a~~~~~~le~gd~e~~~~w~~~ 304 (611)
+++|||||||+||++++.+.. +++.++.....+...+.++|+++++.++++ +|++++++.++++|+|+ . +.+
T Consensus 144 ~~~~~i~D~G~q~~~li~~~~-~~g~d~~~~~~~d~~~g~~y~~~~~~~~~~-~~~~~a~~~~~~~e~g~--~----~~~ 215 (592)
T 1iq0_A 144 LVLNYIDDTGRQAAETLFALR-HYGLTWDGKEKYDHFAGRAYVRLHQDPEYE-RLQPAIEEVLHALERGE--L----REE 215 (592)
T ss_dssp EEEEEECTTSHHHHHHHHHHH-HTTCCCCSSSCHHHHHHHHHHHHHHCTTTG-GGHHHHHHHHHHHHTTT--T----HHH
T ss_pred EEEeccCCcchHHHHHHHHHH-HhCCcccCCCCcchhHHHHHHHHHHHHHhh-hHHHHHHHHHHhCCchH--H----HHH
Confidence 999999999999999987654 355533211244567789999999888777 89999999999999998 1 889
Q ss_pred HHHHHHHHHHHHHhcCCeee-ecccccc--cCcHHHHHHHHHhCCCce-----eecccEEEecc--CCCCC---eEEEcc
Q 007251 305 CEISRKEFDKVYKRLRVDLE-EKGESFY--NPYIPGVIDELSKQGLVE-----ESQGARVIFIE--GVNIP---LIIVKS 371 (611)
Q Consensus 305 ~~~~~~~~~~~~~~LgV~f~-~~~Es~y--~~~v~~vi~~L~~~G~~~-----e~dGa~~~~~~--g~~~d---~Vl~ks 371 (611)
++.++++|+++|++|||+|| |.+||.| .+.++++++.|+++|++| +.+|++||+++ |++++ +|++||
T Consensus 216 ~~~~~~~~~~~~~~LgI~~D~~~~es~~~~~~~v~~~~~~L~~kG~~y~~~~g~~~G~~~~~~~~~g~~~~l~~~vi~ks 295 (592)
T 1iq0_A 216 VNRILLAQMATMHALNARYDLLVWESDIVRAGLLQKALALLEQSPHVFRPREGKYAGALVMDASPVIPGLEDPFFVLLRS 295 (592)
T ss_dssp HHHHHHHHHHHHHHTTCCCSEEEEHHHHHHTTHHHHHHHHHTTSTTEECCSSSTTTTCEEEECTTTSCSCSCCEEEEECT
T ss_pred HHHHHHHHHHHHHHcCCEeEEeccCCcccccchHHHHHHHHHHCCCcccCcccCcCCCEEEechhcCCCCCCCceEEEec
Confidence 99999999999999999995 6689888 889999999999999999 89999999997 56666 899999
Q ss_pred CCcccccCcchhHHHhh--------hhcc--------------------CCCeEEEEEeCCccccHHHHHHHHHHcCCCC
Q 007251 372 DGGFNYASTDLAALWYR--------LNEE--------------------KAEWIIYVTDVGQQLHFDMVFSAAKRAGWLS 423 (611)
Q Consensus 372 DG~~tY~t~DiA~~~~r--------~~~~--------------------~~d~iIyV~g~dq~~hf~~l~~~~~~lG~~~ 423 (611)
||+++|+++|+||++|| ...+ ++|++|||||.+|..||++++.+++++|+.
T Consensus 296 dG~~~Y~~~D~a~~~~Kl~l~~~~~~~~~~~~p~~r~~w~~~g~~~~~~~~~~~iyV~g~~h~~~~~~~~~~~~alG~~- 374 (592)
T 1iq0_A 296 NGTATYYAKDIAFQFWKMGILEGLRFRPYENPYYPGLRTSAPEGEAYTPKAEETINVVDVRQSHPQALVRAALALAGYP- 374 (592)
T ss_dssp TSCBCHHHHHHHHHHHHTTSSCCCEEEECCCSSCTTCEEEEEEEEECCCCCSEEEEEEESSSCCCHHHHHHHHHHTTCH-
T ss_pred CCceEEecchHHHHHHHhhhhhhhhhhhhhcCcchhhcccccCcccCCCCCCEEEEEEeccHHHHHHHHHHHHHHcCCC-
Confidence 99999999999999994 5444 899999999999999999999999999983
Q ss_pred CCCCC-CCcEEEEeeeeEEcCCCceeeeccCCcccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhcCcchhhhh
Q 007251 424 ADDST-YPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYF 502 (611)
Q Consensus 424 ~~~~~-~~~~~Hv~~g~V~~~dG~kmSkR~G~~v~l~dLldea~~~a~~~~~~r~~~~~~~~~e~~~~a~~vg~~avRy~ 502 (611)
+ +..+.|++||||+. +|+|||||+||+|+++||+++++++|.+.+.++++ +++++| ++|+.+|++++|||
T Consensus 375 ----~~~~~~~H~~~g~v~~-~g~KMSKr~Gn~v~l~dll~~~~~~~~~~~~~~~~--~~~~~e--~~a~~vg~~aiRyf 445 (592)
T 1iq0_A 375 ----ALAEKAHHLAYETVLL-EGRQMSGRKGLAVSVDEVLEEATRRARAIVEEKNP--DHPDKE--EAARMVALGAIRFS 445 (592)
T ss_dssp ----HHHTTEEEEEECCEEE-TTBCSCC----CCBHHHHHHHHHHHHHHHHHHHCT--TCSCHH--HHHHHHHHHHHHHH
T ss_pred ----CCCCcEEEEEeeEEEc-CCCcccCCCCCccCHHHHHHHHHHHHHHHHHhhCC--CCCcHH--HHHHhhcHHHHHHH
Confidence 3 45799999999986 67789999999999999999999999999998865 477665 89999999999999
Q ss_pred hccCCCCCcccccccccccccCChHHHHHHHHHHHHHHHHHhCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 007251 503 DLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEAL 582 (611)
Q Consensus 503 ~L~~~~~~~~~Fd~d~~~~~~gnt~~ylqYa~aRi~SIlrKa~~~~~~~~~~~~~~l~~~~e~~L~~~l~~fp~~v~~a~ 582 (611)
+|+.++.++++|||++++++++|+++|+||+|+|+|||++|++.+.. + + ..+.++.|++|++.|.+||+++.+|+
T Consensus 446 ~L~~~~~~~~~Fd~d~~~~~~~~~~~ylqya~aR~~sil~k~~~~~~--~--~-~~l~~~~e~~L~~~l~~~~~~v~~a~ 520 (592)
T 1iq0_A 446 MVKTEPKKQIDFRYQEALSFEGDTGPYVQYAHARAHSILRKAGEWGA--P--D-LSQATPYERALALDLLDFEEAVLEAA 520 (592)
T ss_dssp HHHSCTTSCEEECHHHHHCSSSSSHHHHHHHHHHHHHHHHHHCCCCC--C--C-GGGCCHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHhcCCCCCCeecHHHHHHHhccchHHHHHHHHHHHHHHHhhcccCC--C--c-cCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999864321 1 1 12457889999999999999999999
Q ss_pred HhcchHHHHHHHHHHHHHHhchhhcc-------cCC
Q 007251 583 TNLLPNVVCEYLYNLSEYFTRFYSNC-------QVQ 611 (611)
Q Consensus 583 ~~~~P~~l~~yL~~La~~fn~fY~~~-------~Vl 611 (611)
++++||.+|+||++||+.||+||++| |||
T Consensus 521 ~~~~p~~~~~yl~~La~~fn~fy~~~~~~~~~~~vl 556 (592)
T 1iq0_A 521 EERTPHVLAQYLLDLAASWNAYYNARENGQPATPVL 556 (592)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHHHCEETTEESSCST
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHhccccccCCcee
Confidence 99999999999999999999999999 886
No 4
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=100.00 E-value=2.2e-89 Score=749.51 Aligned_cols=400 Identities=20% Similarity=0.303 Sum_probs=342.9
Q ss_pred eecCHHHHHHHHHHHHHcCCC-CCCccCCCceEEEEecCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCc
Q 007251 155 VVLSKNWMAKNIQKMLVDGIE-TWAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 233 (611)
Q Consensus 155 ~~l~~~~~~~~~~~~l~~~~~-~~~~~~~~~kV~Ve~~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~ 233 (611)
|+|+++++.+.+.++++.++. |..+. ++++|+||||||||||||||||+||++|||+|||+++++||+|+|+||||||
T Consensus 1 ~~l~~~~~~~~l~~i~~~~~~yG~~~~-~~~~v~vE~ss~n~~~~~h~gh~r~~~~gd~~~r~~~~~G~~v~r~nyi~D~ 79 (464)
T 3fnr_A 1 MSLSKTFLNELANQALTNPNDFTKGEK-KQESFLLEYVSANPTGPLHIGHARGAVFGDTLTRLARHLGYKFNTEYYVNDA 79 (464)
T ss_dssp --CCHHHHHHHHHHHHHSGGGTTCCCC-CSCEEEEECCCCCSSSSCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEECCC
T ss_pred CEECHHHHHHHHHHHHHhHHhcCCCCC-CCCEEEEEeCCCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEeeeCCc
Confidence 689999999999999987766 33344 7899999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhh-----CCC-----CCccccchHHHHHH-HHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHH
Q 007251 234 GTQFGMLIEYLFEK-----FPN-----SEDANETAIGELQE-FYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWA 302 (611)
Q Consensus 234 G~Q~~~l~~~~~~~-----~~~-----~~~~~~~~i~~l~~-~y~~~~~~~~~d~~~~~~a~~~~~~le~gd~e~~~~w~ 302 (611)
|+||++|+.++..+ .++ ...+.++++.++++ ++.+....+. +|++...+|+
T Consensus 80 G~Q~g~l~~~~~~~y~~~~~~~~~~~p~~~y~g~~~~~~a~~~~~~~~~~~~------------------~~~~~~~~~~ 141 (464)
T 3fnr_A 80 GNQIYLLGLSILLSVKESILHENVEYPEQYYKGEYIVDLAKEAFEKFGKEFF------------------SEENIPSLAD 141 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCCCCCCCSSCCCSHHHHHHHHHHHHHHCGGGC------------------SGGGHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhcCCCCCCchhhcCccHHHHHHHHHHHhcchhhc------------------CcHHHHHHHH
Confidence 99999998776432 121 12356788888764 3333332221 1455678999
Q ss_pred HHHHHHHHHHHHHHHhcCCee-eeccc-ccccCcHHHHHHHHHhCCCceeecccEEEecc--CCCCCeEEEccCCccccc
Q 007251 303 QICEISRKEFDKVYKRLRVDL-EEKGE-SFYNPYIPGVIDELSKQGLVEESQGARVIFIE--GVNIPLIIVKSDGGFNYA 378 (611)
Q Consensus 303 ~~~~~~~~~~~~~~~~LgV~f-~~~~E-s~y~~~v~~vi~~L~~~G~~~e~dGa~~~~~~--g~~~d~Vl~ksDG~~tY~ 378 (611)
.++++++++|+++|++|||+| .|++| |+|. .+++++++|+++|++|++|||+||+++ |+++|+||+||||++||+
T Consensus 142 ~~~~~~l~~~~~~~~~l~V~fD~~~~Ess~~~-~~~~vv~~L~~~g~~~e~dGa~~~~~~~~g~~~~~vl~ksDG~~~Y~ 220 (464)
T 3fnr_A 142 WAKDKMLVLIKQNLEQAKIKIDSYVSERSYYD-ALNATLESLKEHKGIYEQEGKIWLASSQKGDEKDRVIIREDGRGTYL 220 (464)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCSCEEEGGGGST-THHHHHHHHHHTTCEEEETTEEEECGGGGTCSSCEEEECTTSCBCHH
T ss_pred HHHHHHHHHHHHHHHHhCCCceeecCHHHHHH-HHHHHHHHHHHCCCEEEeCCeEEEEecccCCCCceEEEeCCCceehh
Confidence 999999999999999999999 57899 7887 999999999999999999999999987 688899999999999999
Q ss_pred CcchhHHHhhhhccCCCeEEEEEeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEeeeeE-EcCCCc--eeeeccCCc
Q 007251 379 STDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLV-LGEDGK--RLRTRFSEV 455 (611)
Q Consensus 379 t~DiA~~~~r~~~~~~d~iIyV~g~dq~~hf~~l~~~~~~lG~~~~~~~~~~~~~Hv~~g~V-~~~dG~--kmSkR~G~~ 455 (611)
|+||||+++|+ ++++|++|||+|+||++||++++++++++|+.| .++.|+.|||| +++||+ |||||+||+
T Consensus 221 t~DiA~~~~r~-~~~~d~~Iyv~G~dq~~~f~~l~~~l~~lG~~~------~~~~h~~~g~V~l~~dG~~~KMSKr~Gn~ 293 (464)
T 3fnr_A 221 AADIVYHKDKM-SRGYGKCINIWGADHHGYIPRMKAAMEFLGFDS------NNLEIILAQMVSLLKDGEPYKMSKRAGNF 293 (464)
T ss_dssp HHHHHHHHHHH-TSSCSEEEEEEEGGGGGGHHHHHHHHHTTTCCG------GGEEEEEECCEEEEETTEECCC---CCSS
T ss_pred hHHHHHHHHHH-HcCCCeEEEEecCcHHHHHHHHHHHHHHcCCCc------cceEEEEeeeEEecCCCcccCCcCcCCCC
Confidence 99999999999 468999999999999999999999999999953 37899999999 567885 999999999
Q ss_pred ccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhcCcchhhhhhccCCCCCccccccccccccc-CChHHHHHHHH
Q 007251 456 VRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDK-GNTAVYLLYAH 534 (611)
Q Consensus 456 v~l~dLldea~~~a~~~~~~r~~~~~~~~~e~~~~a~~vg~~avRy~~L~~~~~~~~~Fd~d~~~~~~-gnt~~ylqYa~ 534 (611)
|+++|++++ +|+|++||++|+..+.++++|||+.++++. +|+++|+||||
T Consensus 294 v~l~dll~~-----------------------------~g~dalRy~~l~~~~~~d~~Fd~~~~~~~~n~npv~YlqYa~ 344 (464)
T 3fnr_A 294 ILMSDVVDE-----------------------------IGSDALRYIFLSKKCDTHLEFDISDLQKEDSSNPVYYINYAH 344 (464)
T ss_dssp CBHHHHHHH-----------------------------HCHHHHHHHTTSSCTTSCEEEEGGGGGCCSTTSHHHHHHHHH
T ss_pred CCHHHHHhh-----------------------------ccHHHHHHHHHhcCCCCCCccCHHHHHHHhCCCHHHHHHHHH
Confidence 999999998 699999999999999999999999999975 46667999999
Q ss_pred HHHHHHHHHhCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhchhhcccCC
Q 007251 535 ARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNCQVQ 611 (611)
Q Consensus 535 aRi~SIlrKa~~~~~~~~~~~~~~l~~~~e~~L~~~l~~fp~~v~~a~~~~~P~~l~~yL~~La~~fn~fY~~~~Vl 611 (611)
+|+|||+||++.....++..+...+.++ |++|+..|.+||++|.+|+++++||++|+||++||..||+||++||||
T Consensus 345 aRi~silrk~~~~~~~~~~~~~~~L~~~-e~~Ll~~L~~~~~~v~~a~~~~ep~~i~~yL~~La~~~n~fY~~~~vl 420 (464)
T 3fnr_A 345 ARIHQVFAKAGKKIDDVMKADLQSLNQD-GVNLLFEALNLKAVLNDAFEARALQKIPDYLKNLAANFHKFYNENKVV 420 (464)
T ss_dssp HHHHHHHHHTTCCTTTSTTCCCTTCCHH-HHHHHHHHHTHHHHHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHCCCT
T ss_pred HHHHHHHHHhhccCCCccccChhhCChH-HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCcCC
Confidence 9999999998643211111122345555 999999999999999999999999999999999999999999999996
No 5
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=100.00 E-value=7.2e-40 Score=366.67 Aligned_cols=330 Identities=12% Similarity=0.113 Sum_probs=240.0
Q ss_pred CCceEEEEecCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCccccchHHH
Q 007251 182 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 261 (611)
Q Consensus 182 ~~~kV~Ve~~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~ 261 (611)
+++++.|....|+||||+||||+|++++||+|+|+++..||+|.++++++|+|.++...+...
T Consensus 23 ~~~~~~i~~p~pypng~lHiGH~r~~v~~D~laR~lr~~G~~V~~~~g~dd~g~ki~~~a~~~----------------- 85 (536)
T 4dlp_A 23 SREKYYITTAIAYPNGKPHIGHAYELIATDAMARFQRLNGMDVYFLTGTDEHGIKMLQSARKE----------------- 85 (536)
T ss_dssp -CCEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHH-----------------
T ss_pred CCCCEEEeCCCCCCCCCcCcchhHHHHHHHHHHHHHHhcCCcEEEecCcCCcchHHHHHHHHc-----------------
Confidence 346899999999999999999999999999999999999999999999999998775432100
Q ss_pred HHHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHhcCCeeee-ccc--ccccCcHHHH
Q 007251 262 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEE-KGE--SFYNPYIPGV 338 (611)
Q Consensus 262 l~~~y~~~~~~~~~d~~~~~~a~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~LgV~f~~-~~E--s~y~~~v~~v 338 (611)
.. + ++++++.+.+.|++++++|||.+|. ..+ ..|.+.++++
T Consensus 86 ------------g~------------------~------~~~~~~~~~~~~~~~l~~lgi~~d~~~~t~~~~~~~~v~~~ 129 (536)
T 4dlp_A 86 ------------GI------------------T------PRDLADRNTSAFRRMAEVLNSSNDDYIRTSEERHYKASQAI 129 (536)
T ss_dssp ------------TS------------------C------HHHHHHHHHHHHHHHHHHTTCCCSEEEETTSHHHHHHHHHH
T ss_pred ------------CC------------------C------HHHHHHHHHHHHHHHHHHcCCCCCcceeCCCHHHHHHHHHH
Confidence 00 1 2356788889999999999999954 333 3578899999
Q ss_pred HHHHHhCCCceeecccEEEecc------------C---------------------------------------------
Q 007251 339 IDELSKQGLVEESQGARVIFIE------------G--------------------------------------------- 361 (611)
Q Consensus 339 i~~L~~~G~~~e~dGa~~~~~~------------g--------------------------------------------- 361 (611)
+++|.++|++|+.++.+|+... |
T Consensus 130 ~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~~~~~~~g~~c~~~g~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~~~i~P 209 (536)
T 4dlp_A 130 WQAMVANGDIYKGGYAGWYSVRDEAYYGEEETEVRADGVRYGPQGTPVEWVEEESYFFRLSAYQDKLLDLYENNPGFIMP 209 (536)
T ss_dssp HHHHHHTTCEEEEEEEEEEETTTTEEECGGGCEECTTSCEECTTSSBCEEEEEEEEEECGGGGHHHHHHHHHHCTTSEES
T ss_pred HHHHHHCCCEEEeceeeeecCCcCcccCHHHhhcCCCCCcccCCCCcceEEeccceEEecHHHHHHHHHHHHhCCCccCc
Confidence 9999999999998877765331 0
Q ss_pred -------------CCCCeEEEccC-----------Ccccc--cCcchhHH---Hh-----hhh-ccCCCeEEEEEeCCcc
Q 007251 362 -------------VNIPLIIVKSD-----------GGFNY--ASTDLAAL---WY-----RLN-EEKAEWIIYVTDVGQQ 406 (611)
Q Consensus 362 -------------~~~d~Vl~ksD-----------G~~tY--~t~DiA~~---~~-----r~~-~~~~d~iIyV~g~dq~ 406 (611)
..+|..+.|++ +...| +..+++|. -| +++ -|..| ++|+|.||.
T Consensus 210 ~~~~~~~~~~l~~~l~D~~ISR~~~~WGipiP~~~~~v~yvWfda~~~y~s~~~~~~~~~~~~~~~p~d--v~~~G~D~~ 287 (536)
T 4dlp_A 210 AERRNEIVSFVKSGLKDLSISRTTFDWGIPVPGDEKHVMYVWVDALTNYITALGYPDTTDERWAYWPAN--AHIIGKDIS 287 (536)
T ss_dssp HHHHHHHHHHHHTCCCCEECEEC--CCSCBCTTCTTSEECHHHHHHHHHHHTTTTTCTTSGGGGGCSCS--EEEEEGGGH
T ss_pred HHHHHHHHHHHhcCCCccCCccCCCcCCeeCCCCCCCceEEeeCCcHHHHHhcCCCCCchHHHhhCCcc--eEEeechHH
Confidence 11355555642 22233 33334442 11 121 13444 899999997
Q ss_pred ccHHHHH--HHHHHcCCCCCCCCCCCcEEEEeeeeEEcCCCceeeeccCCcccHHHHHHHHHHHHHHHHHHhcCCCCCCH
Q 007251 407 LHFDMVF--SAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTE 484 (611)
Q Consensus 407 ~hf~~l~--~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~dG~kmSkR~G~~v~l~dLldea~~~a~~~~~~r~~~~~~~~ 484 (611)
. |..++ +.+.++|+.+ ...+.. +|+|+. +|+|||||+||+|++.|++++
T Consensus 288 ~-fh~~~~~a~l~a~g~~~-----~~~v~~--hg~v~~-~G~KMSKS~GNvi~p~d~i~~-------------------- 338 (536)
T 4dlp_A 288 R-FHAVYWPAFLMSAQLPL-----PKRVFA--HGFLFN-RGEKMSKSVGNVIDPFELVER-------------------- 338 (536)
T ss_dssp H-HHHTHHHHHHHHTTCCC-----CSCEEE--ECCEEC-------------CCHHHHHHH--------------------
T ss_pred H-HHHHHHHHHHHHCCCCC-----CcEEEe--eeeEee-CCceecccCCCCCCHHHHHHH--------------------
Confidence 6 54444 5567788843 233332 377875 899999999999999999998
Q ss_pred HHHHHHHhhcCcchhhhhhcc-CCCCCcccccccccccc-cCChHHHHHHHHHHHHHHHHHhCCChhhhhhcCCCCCCCH
Q 007251 485 EELEQTAEAVGYGAAKYFDLK-NNRLTNYTFSFDQMLND-KGNTAVYLLYAHARICSIIRKSGKDIEELKKTGSLVLDHA 562 (611)
Q Consensus 485 ~e~~~~a~~vg~~avRy~~L~-~~~~~~~~Fd~d~~~~~-~gnt~~ylqYa~aRi~SIlrKa~~~~~~~~~~~~~~l~~~ 562 (611)
+|+|++||++++ ....+|++||++.+.+. +.+...+++|+++|+++++.+...+. ++. ....++
T Consensus 339 ---------~GaDalR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~~~~~~~--~p~---~~~~~~ 404 (536)
T 4dlp_A 339 ---------YGLDQLRYFLMREVPFGQDGSYSHEAIVNRTNADLANDLGNLAQRSLSMIAKNCEGK--VPQ---PGAFSE 404 (536)
T ss_dssp ---------HCHHHHHHHHHHHSCTTSCEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHSTTB--CCC---CCCCCH
T ss_pred ---------cCcHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC--CCC---cccCCH
Confidence 699999999999 57789999999998774 44566678888999999998874321 111 112367
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhchhhccc
Q 007251 563 DERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNCQ 609 (611)
Q Consensus 563 ~e~~L~~~l~~fp~~v~~a~~~~~P~~l~~yL~~La~~fn~fY~~~~ 609 (611)
.+++|+..+.++++.+.+++++++|+.+++++++|+..+|.||+.++
T Consensus 405 ~d~~ll~~l~~~~~~v~~a~~~~~~~~a~~~l~~l~~~~n~Y~~~~k 451 (536)
T 4dlp_A 405 ADKAILDQADAALETARKAMDDQALHLALGAIFAVVAEANRYFAGQE 451 (536)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 88999999999999999999999999999999999999999998775
No 6
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=100.00 E-value=4.9e-39 Score=352.79 Aligned_cols=308 Identities=14% Similarity=0.197 Sum_probs=238.0
Q ss_pred CCceEEEEecCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCccccchHHH
Q 007251 182 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 261 (611)
Q Consensus 182 ~~~kV~Ve~~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~ 261 (611)
.+++|.+++|||||+|++||||+|++|+||+|+|+|++.||+|..+++++|+|..|-
T Consensus 19 ~~~~v~~yv~gPt~y~~~HiGHar~~v~~D~l~R~lr~~G~~V~~v~~~tD~d~ki~----------------------- 75 (461)
T 1li5_A 19 HAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKII----------------------- 75 (461)
T ss_dssp STTEEEEEECCCBSSSCCBHHHHHHHHHHHHHHHHHHHHTCEEEEEECBBCCSHHHH-----------------------
T ss_pred CCCCeeEEEcCCcCCCCCcccccHHHHHHHHHHHHHHHcCCCEEEeecCCCCcHHHH-----------------------
Confidence 467899999999999999999999999999999999999999999999999984321
Q ss_pred HHHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHhcCCee-eec-ccccccCcHHHHH
Q 007251 262 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDL-EEK-GESFYNPYIPGVI 339 (611)
Q Consensus 262 l~~~y~~~~~~~~~d~~~~~~a~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~LgV~f-~~~-~Es~y~~~v~~vi 339 (611)
.++.+ .|. .|+++++.+.+.|+++|++|||.+ +++ .+|.|.+.+.+++
T Consensus 76 -----~~A~~--------------------~g~-----~~~~~~~~~~~~f~~~~~~LgI~~~d~~~r~t~~~~~~~~~i 125 (461)
T 1li5_A 76 -----KRANE--------------------NGE-----SFVAMVDRMIAEMHKDFDALNILRPDMEPRATHHIAEIIELT 125 (461)
T ss_dssp -----HHHHH--------------------TTC-----CHHHHHHHHHHHHHHHHHHTTCCCCSBCCBGGGCHHHHHHHH
T ss_pred -----HHHHH--------------------cCC-----CHHHHHHHHHHHHHHHHHHcCCCCCcccccccchHHHHHHHH
Confidence 11111 122 267889999999999999999998 765 4578888999999
Q ss_pred HHHHhCCCceee-cccEEEecc---------C-------------------CCCCeEEEcc--CCcccccCc--------
Q 007251 340 DELSKQGLVEES-QGARVIFIE---------G-------------------VNIPLIIVKS--DGGFNYAST-------- 380 (611)
Q Consensus 340 ~~L~~~G~~~e~-dGa~~~~~~---------g-------------------~~~d~Vl~ks--DG~~tY~t~-------- 380 (611)
+.|.++|++|+. +|++||+++ | +..|++++|+ +|.++|.++
T Consensus 126 ~~L~~~G~aY~~~~g~v~f~~~~~~~yg~lsg~~~~~l~~g~rv~~~~~k~~p~Df~lwk~~~~g~~~w~s~WG~g~PgW 205 (461)
T 1li5_A 126 EQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVDDKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGW 205 (461)
T ss_dssp HHHHHTTSEEECTTSCEEECGGGCTTTTTTTTC----------------CCSTTCEEEEEECCTTSCCBCCTTCSEEECS
T ss_pred HHHHHCCCEEEecCCCEEEecccccccccccCCCHHHhhcCCcccchhcccCccceEEEccCCCCCCcccCCCCCcCCCc
Confidence 999999999999 999999753 1 0147888886 788888653
Q ss_pred --chhHHHhhhhccCCCeEEEEEeCCccc-cHHHHHHHHHH-cCCCCCCCCCCCcEEEEeeeeEEcCCCceeeeccCCcc
Q 007251 381 --DLAALWYRLNEEKAEWIIYVTDVGQQL-HFDMVFSAAKR-AGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVV 456 (611)
Q Consensus 381 --DiA~~~~r~~~~~~d~iIyV~g~dq~~-hf~~l~~~~~~-lG~~~~~~~~~~~~~Hv~~g~V~~~dG~kmSkR~G~~v 456 (611)
.+....+++ ++....|++.|.|+.. |.....+.+.+ +|+ +++..|.|. |+|+. +|+|||||+||+|
T Consensus 206 hiecsam~~~~--lg~~~dih~gG~Dl~fpH~~~~~aq~~a~~g~-----~~~~~~~h~--g~v~~-~G~KMSKS~GN~v 275 (461)
T 1li5_A 206 HIECSAMNCKQ--LGNHFDIHGGGSDLMFPHHENEIAQSTCAHDG-----QYVNYWMHS--GMVMV-DREKMSKSLGNFF 275 (461)
T ss_dssp SHHHHHHHHHH--HCSSEEEEECBGGGTTTHHHHHHHHHHHHSSS-----CCEEEECCB--CCEEE-TTBCCCGGGTCCC
T ss_pred cchhHHHHHHH--hCCCceEEeccCccCchHHHHHHHHHHHhcCC-----CCCcEEEEe--eEEEE-CCeEccccCCCcc
Confidence 112222232 3444445555666432 22222222333 476 355678887 55764 7999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhcCcchhhhhhccCCCCCcccccccccccccCChHHHHHHHHHH
Q 007251 457 RLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHAR 536 (611)
Q Consensus 457 ~l~dLldea~~~a~~~~~~r~~~~~~~~~e~~~~a~~vg~~avRy~~L~~~~~~~~~Fd~d~~~~~~gnt~~ylqYa~aR 536 (611)
++.|++++ +|++++|||+|+.++.++++|+++.+.+. ++++.|
T Consensus 276 ~~~dll~~-----------------------------~g~dalR~~ll~~~~~~~~~fs~~~l~~~--------~~~l~r 318 (461)
T 1li5_A 276 TVRDVLKY-----------------------------YDAETVRYFLMSGHYRSQLNYSEENLKQA--------RAALER 318 (461)
T ss_dssp BHHHHHTT-----------------------------SCHHHHHHHHHSSCTTSCEEECHHHHHHH--------HHHHHH
T ss_pred ChhHHhhh-----------------------------CCHHHHHHHHHcCCcCCCCCCCHHHHHHH--------HHHHHH
Confidence 99999997 79999999999998999999999988653 577899
Q ss_pred HHHHHHHhCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HhcchHHHHHHHHHHHHHHhchhhc
Q 007251 537 ICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEAL-TNLLPNVVCEYLYNLSEYFTRFYSN 607 (611)
Q Consensus 537 i~SIlrKa~~~~~~~~~~~~~~l~~~~e~~L~~~l~~fp~~v~~a~-~~~~P~~l~~yL~~La~~fn~fY~~ 607 (611)
+.+++++... . +.. + .+..+++.+.+++ ++++++.++.+|++|+..+|+||++
T Consensus 319 l~n~~~~~~~---~--------~~~--d-----~l~~~~~~~~~am~dd~n~~~Al~~l~~l~~~~N~~~~~ 372 (461)
T 1li5_A 319 LYTALRGTDK---T--------VAP--A-----GGEAFEARFIEAMDDDFNTPEAYSVLFDMAREVNRLKAE 372 (461)
T ss_dssp HHHHHTTCCT---T--------SCC--C-----SCHHHHHHHHHHHHBTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhc---C--------CCH--H-----HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHhc
Confidence 9999976521 0 011 1 3567888999999 8999999999999999999999864
No 7
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=100.00 E-value=1.6e-39 Score=365.65 Aligned_cols=330 Identities=14% Similarity=0.119 Sum_probs=249.3
Q ss_pred CCCceEEEEecCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCccccchHH
Q 007251 181 LRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIG 260 (611)
Q Consensus 181 ~~~~kV~Ve~~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~i~ 260 (611)
++++++.|...+|||||++||||+|++++||+|||+++..||+|.++++++|+|.++...+..
T Consensus 23 ~~~~~~~i~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~dd~G~ki~~~a~~----------------- 85 (564)
T 3kfl_A 23 KKQKVFFATTPIYYVNASPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQKVAEAAAK----------------- 85 (564)
T ss_dssp -CCCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEECCSHHHHHHHHH-----------------
T ss_pred cCCCCEEEeCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCcEEEecCcCCCCcHHHHHHHH-----------------
Confidence 456899999999999999999999999999999999999999999999999999877543210
Q ss_pred HHHHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHhcCCeeeec-c--cccccCcHHH
Q 007251 261 ELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEK-G--ESFYNPYIPG 337 (611)
Q Consensus 261 ~l~~~y~~~~~~~~~d~~~~~~a~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~LgV~f~~~-~--Es~y~~~v~~ 337 (611)
...+ ++++++.+.+.|++++++|||.||.+ . +..|.+.+++
T Consensus 86 ------------~g~~------------------------p~~~~~~~~~~~~~~~~~lgi~~D~~~~t~~~~~~~~v~~ 129 (564)
T 3kfl_A 86 ------------QGVS------------------------PMDFTTSVSSEFKQCFQEMNYDMNYFIRTTNPTHEKLVQD 129 (564)
T ss_dssp ------------TTCC------------------------HHHHHHHHHHHHHHHHHHTTCCCSEEEETTSHHHHHHHHH
T ss_pred ------------cCCC------------------------HHHHHHHHHHHHHHHHHHcCCCCCccccCCCHHHHHHHHH
Confidence 0011 13467888899999999999999643 3 3467889999
Q ss_pred HHHHHHhCCCceeecccEEEecc------------C--------------------------------------------
Q 007251 338 VIDELSKQGLVEESQGARVIFIE------------G-------------------------------------------- 361 (611)
Q Consensus 338 vi~~L~~~G~~~e~dGa~~~~~~------------g-------------------------------------------- 361 (611)
++++|.++|++|+.++..|+... |
T Consensus 130 ~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~~~~~~~~~g~~c~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~ 209 (564)
T 3kfl_A 130 IWKKLAAKGDIYLGKYEGWYSVSDESFLTAQNVADGVDRDGKPCKVSLESGHVVTWVEEENYMFRLSAFRERLLKYFHDH 209 (564)
T ss_dssp HHHHHHHHTCEEEEEEEEEEETTTTEEECGGGEEEEECTTSCEEEEETTTSCBCEEEEEEEEEECGGGGHHHHHHHHHHC
T ss_pred HHHHHHHCCCEEEeeeeEEecCCcCCCCCHHHhccCcCCCCCEeccccCCCCccEEEecceeEEEHHHHHHHHHHHHHhC
Confidence 99999999999987655554321 0
Q ss_pred -------------------CCCCeEEEc---cC-----------CcccccCcc-----hhHHHh---h---------h--
Q 007251 362 -------------------VNIPLIIVK---SD-----------GGFNYASTD-----LAALWY---R---------L-- 389 (611)
Q Consensus 362 -------------------~~~d~Vl~k---sD-----------G~~tY~t~D-----iA~~~~---r---------~-- 389 (611)
...|..|.| ++ +...|+--| ++...| + +
T Consensus 210 ~~~i~P~~~~~~~~~wl~~gl~D~~ISR~~~~~~~WGipiP~~~~~v~yVWfDa~~~y~s~~~~~~~~~~~~~~~~~~~~ 289 (564)
T 3kfl_A 210 PNCIVPEFRRREVIKTVEKGLFDLSISRKRESVMNWSIPVPGDERHCIYVWLDALFNYYTGALTRVATDGTETLDEDHHA 289 (564)
T ss_dssp TTSEESHHHHHHHHHHHHHCCCCEECEEEGGGGTTCSCEETTEEEEEECHHHHHHTHHHHHHHEEECTTSCEEECSSSTT
T ss_pred CCccCCHHHHHHHHHHHhCCCCCccccCcCCCCCCCCeecCCCCCCEEEEeccCcHHHHHHhCccccccccccchhcchh
Confidence 012333333 11 122222222 222222 1 1
Q ss_pred h-ccCCCeEEEEEeCCccccHHHHH--HHHHHcCCCCCCCCCCCcEEEEeeeeEEcCCCceeeeccCCcccHHHHHHHHH
Q 007251 390 N-EEKAEWIIYVTDVGQQLHFDMVF--SAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAK 466 (611)
Q Consensus 390 ~-~~~~d~iIyV~g~dq~~hf~~l~--~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~dG~kmSkR~G~~v~l~dLldea~ 466 (611)
. -|.+| ++++|.||.. |..++ +.+.++|+.+ ...+. .+|+| +.+|+|||||+||+|++.|++++
T Consensus 290 ~~~wp~d--v~~~GkDii~-FH~~~wpa~L~a~g~~~-----~~~v~--~hg~v-~~~G~KMSKS~GNvV~p~d~i~~-- 356 (564)
T 3kfl_A 290 LNRWPAD--VHVVGKDILK-FHAIYWPAFLMSAELPL-----PERLV--SHGWW-TKDHKKISKSLGNAFDPVEKAKE-- 356 (564)
T ss_dssp TTCCSCS--EEEEEGGGHH-HHHTHHHHHHHHTTCCC-----CSCEE--EECCE-EETTEECCTTTTCCCCHHHHHHH--
T ss_pred hhcCccc--eEEEeecccc-hHHHHHHHHHHhCCCCC-----CcEEE--EcccE-eeCCccccccCCCCCCHHHHHHH--
Confidence 1 12334 8999999987 44444 6677889843 23333 34778 57899999999999999999998
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHhhcCcchhhhhhcc-CCCCCccccccccccc-ccCChHHHHHHHHHHHHHHHHHh
Q 007251 467 NRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLK-NNRLTNYTFSFDQMLN-DKGNTAVYLLYAHARICSIIRKS 544 (611)
Q Consensus 467 ~~a~~~~~~r~~~~~~~~~e~~~~a~~vg~~avRy~~L~-~~~~~~~~Fd~d~~~~-~~gnt~~ylqYa~aRi~SIlrKa 544 (611)
+|+|++||++++ ....+|++||++.+.+ .+++..++++|+++|+++++.+.
T Consensus 357 ---------------------------~G~DalR~~ll~~~~~~~D~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~~~ 409 (564)
T 3kfl_A 357 ---------------------------FGIDALKYFLMRESNFQDDGDYSDKNMVARLNGELADTLGNLVSRCVAPKINV 409 (564)
T ss_dssp ---------------------------HCHHHHHHHHHHHCCSSCCEECCHHHHHHHHHHTTTTTHHHHHHHHHCTTTST
T ss_pred ---------------------------cCcHHHHHHHHHcCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 699999999999 6778999999999987 46788999999999999998732
Q ss_pred CCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhchhhccc
Q 007251 545 GKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNCQ 609 (611)
Q Consensus 545 ~~~~~~~~~~~~~~l~~~~e~~L~~~l~~fp~~v~~a~~~~~P~~l~~yL~~La~~fn~fY~~~~ 609 (611)
. +. ++. .. ..++.+++|+..+..+++.+.+++++++|+.+++++++|+..+|+||+.++
T Consensus 410 ~-g~--~p~--~~-~~~~~d~~ll~~l~~~~~~v~~a~e~~~~~~a~~~i~~l~~~~n~Y~~~~k 468 (564)
T 3kfl_A 410 N-GM--WPE--PA-EYSESDKTLIASLNNLAGTVDHYYCLPDIQHALIAIFDVLRSLNAYVTENA 468 (564)
T ss_dssp T-SB--CCC--CC-CCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred C-Cc--CCC--CC-CCCHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHhcC
Confidence 1 11 111 11 125778899999999999999999999999999999999999999998765
No 8
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=100.00 E-value=1.2e-36 Score=337.64 Aligned_cols=324 Identities=17% Similarity=0.179 Sum_probs=237.0
Q ss_pred CceEEEEecCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCccccchHHHH
Q 007251 183 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 262 (611)
Q Consensus 183 ~~kV~Ve~~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l 262 (611)
.+++.|...+|||||++||||+|+++++|+++|+++..||+|.++..++|+|..+..-
T Consensus 4 ~~~~~i~~p~py~ng~lHiGH~~~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~---------------------- 61 (497)
T 2csx_A 4 MKKFYVTTPIYYVNDVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKK---------------------- 61 (497)
T ss_dssp SCEEEEEEEEEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHTH----------------------
T ss_pred CCcEEEecCCCCCCCccchhhHHHHHHHHHHHHHHHhcCCceeeecccCCCcHHHHHH----------------------
Confidence 4689999999999999999999999999999999999999999998888887533211
Q ss_pred HHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHhcCCeeeec---ccccccCcHHHHH
Q 007251 263 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEK---GESFYNPYIPGVI 339 (611)
Q Consensus 263 ~~~y~~~~~~~~~d~~~~~~a~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~LgV~f~~~---~Es~y~~~v~~vi 339 (611)
+.+ .|.+ ++++++.+.+.|++++++|||.+|++ ++..|.+.+.+++
T Consensus 62 ------a~~--------------------~g~~-----~~~~~~~~~~~~~~~~~~lgi~~d~~~~t~~~~~~~~~~~~~ 110 (497)
T 2csx_A 62 ------AEE--------------------LGIS-----PKELVDRNAERFKKLWEFLKIEYTKFIRTTDPYHVKFVQKVF 110 (497)
T ss_dssp ------HHH--------------------SSSC-----HHHHHHHHHHHHHHHHHHTTCCCSEEEETTSHHHHHHHHHHH
T ss_pred ------HHH--------------------cCCC-----HHHHHHHHHHHHHHHHHHhCCcCCCCccCCCHHHHHHHHHHH
Confidence 000 0110 13467888899999999999999653 3445888999999
Q ss_pred HHHHhCCCceee--cccEEEeccC-----C--------------------------------------------------
Q 007251 340 DELSKQGLVEES--QGARVIFIEG-----V-------------------------------------------------- 362 (611)
Q Consensus 340 ~~L~~~G~~~e~--dGa~~~~~~g-----~-------------------------------------------------- 362 (611)
++|.++|++|+. .|.+|+.++. .
T Consensus 111 ~~L~~~G~iY~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~wf~~l~~~~~~l~~~~~~~~~~~~p~~~~ 190 (497)
T 2csx_A 111 EECYKRGDIYLGEYEGWYCVGCEEFKSEAELAEDHTCPIHQKKCEYIKEPSYFFRLSKYQDKLLELYEKNPEFIQPDYRR 190 (497)
T ss_dssp HHHHHTTCEEEEEC---------------------------------CCEEEEECTTSSHHHHHHHHHHCTTSBCSHHHH
T ss_pred HHHHHCCCEEecceeeccCcccCeEccHHHhccCCCCCCCCCCCeEEecCceEEEcHHHHHHHHHHHHhCCCeeCcHHHH
Confidence 999999999986 4666554310 0
Q ss_pred ----------CCCeEEEc--cC---CcccccC-cchhH------------HHhh-hhccCCCeEEEEEeCCccccHHHHH
Q 007251 363 ----------NIPLIIVK--SD---GGFNYAS-TDLAA------------LWYR-LNEEKAEWIIYVTDVGQQLHFDMVF 413 (611)
Q Consensus 363 ----------~~d~Vl~k--sD---G~~tY~t-~DiA~------------~~~r-~~~~~~d~iIyV~g~dq~~hf~~l~ 413 (611)
..|..+.| ++ |.+.... .++.+ ...+ ...+++| +++.|.||.. |..++
T Consensus 191 ~~~~~~l~~~~~Dw~isR~~~~~~WG~~iP~~~~~~i~vW~ds~~~~~s~~~~~~~~~~p~d--i~~~G~D~~~-~H~~~ 267 (497)
T 2csx_A 191 NEIISFVKQGLKDLSVTRPRSRVKWGIPVPFDPEHTIYVWFDALFNYISALEDKVEIYWPAD--LHLVGKDILR-FHTVY 267 (497)
T ss_dssp HHHHHHHHHCCCCEECEEETTTCCSSEEETTEEEEEECSHHHHHTHHHHTTTTTHHHHCSCS--CEEEEGGGHH-HHHTH
T ss_pred HHHHHHHhcCCccccccccCCCCCCceecCCCCCceEEEecccchhhcccCCCcchhhCCce--EEEeecchhH-hHHHH
Confidence 01333333 22 3322210 01100 0000 0124555 7789999876 33323
Q ss_pred --HHHHHcCCCCCCCCCCCcEEEEeeeeEEcCCCceeeeccCCcccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 007251 414 --SAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTA 491 (611)
Q Consensus 414 --~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~dG~kmSkR~G~~v~l~dLldea~~~a~~~~~~r~~~~~~~~~e~~~~a 491 (611)
+.+.++|+. +...+.|. |+|+. +|+|||||+||+|++.|++++
T Consensus 268 ~~a~l~~~g~~-----~~~~~~~~--G~v~~-~G~KMSKS~GN~i~~~dli~~--------------------------- 312 (497)
T 2csx_A 268 WPAFLMSLGYE-----LPKKVFAH--GWWTV-EGKKMSKTLGNVVDPYEVVQE--------------------------- 312 (497)
T ss_dssp HHHHHHHHTCC-----CCSCEEEE--CCEES-SSSBCCTTTTCCCCHHHHHHH---------------------------
T ss_pred HHHHHHHcCCC-----CCcEEEEC--cEEEe-CCceeCCcCCCCCCHHHHHHH---------------------------
Confidence 556778874 34567776 77886 899999999999999999998
Q ss_pred hhcCcchhhhhhcc-CCCCCccccccccccccc-CChHHHHHHHHHHHHHHHHHhCCChhhhhhcCCCCCCCHHHHHHHH
Q 007251 492 EAVGYGAAKYFDLK-NNRLTNYTFSFDQMLNDK-GNTAVYLLYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGL 569 (611)
Q Consensus 492 ~~vg~~avRy~~L~-~~~~~~~~Fd~d~~~~~~-gnt~~ylqYa~aRi~SIlrKa~~~~~~~~~~~~~~l~~~~e~~L~~ 569 (611)
+|+|++||++++ .++.++++|+++.+.+.. .+..++++|+++|+++++++...+. + .++.+++|+.
T Consensus 313 --~g~DalR~~ll~~~~~~~d~~fs~~~l~~~~~~~l~~~l~n~~~R~~~~~~~~~~~~--~--------~~~~d~~l~~ 380 (497)
T 2csx_A 313 --YGLDEVRYFLLREVPFGQDGDFSKKAILNRINGELANEIGNLYSRVVNMAHKFLGGE--V--------SGARDEEYAK 380 (497)
T ss_dssp --HCHHHHHHHHHHSSCTTSCEECCHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHSTTC--B--------CCCCCTTHHH
T ss_pred --CCcHHHHHHHHhcCCcccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--C--------CchhHHHHHH
Confidence 699999999998 678999999999988754 4556789999999999999864210 1 1234567999
Q ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhchhhccc
Q 007251 570 HLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNCQ 609 (611)
Q Consensus 570 ~l~~fp~~v~~a~~~~~P~~l~~yL~~La~~fn~fY~~~~ 609 (611)
.+..+++.+.+++++++++.++.++++++..+|.|++.++
T Consensus 381 ~l~~~~~~v~~~~~~~~~~~a~~~l~~l~~~~n~y~~~~k 420 (497)
T 2csx_A 381 IAQESIKNYENYMEKVNFYKAIEEILKFTSYLNKYVDEKQ 420 (497)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999998653
No 9
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=100.00 E-value=3.3e-36 Score=338.72 Aligned_cols=330 Identities=13% Similarity=0.139 Sum_probs=241.6
Q ss_pred CCCceEEEEecCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCccccchHH
Q 007251 181 LRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIG 260 (611)
Q Consensus 181 ~~~~kV~Ve~~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~i~ 260 (611)
...+++.|--.-|+|||++||||+|++++||+|+|+++..||+|..+..++|+|.++...+...
T Consensus 15 ~~~~~~~v~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~D~~G~~i~~~a~~~---------------- 78 (560)
T 3h99_A 15 QVAKKILVTCASPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQL---------------- 78 (560)
T ss_dssp --CCEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHH----------------
T ss_pred CCCCcEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCeEEEeeeecCcCcHHHHHHHHh----------------
Confidence 3456777766678888999999999999999999999999999999999999998775432110
Q ss_pred HHHHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHhcCCeeee-ccc--ccccCcHHH
Q 007251 261 ELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEE-KGE--SFYNPYIPG 337 (611)
Q Consensus 261 ~l~~~y~~~~~~~~~d~~~~~~a~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~LgV~f~~-~~E--s~y~~~v~~ 337 (611)
.. + ++++++.+.+.|++++++|||.++. ..+ ..|.+.+++
T Consensus 79 -------------g~------------------~------~~~~~~~~~~~~~~~~~~lgi~~d~~~~t~~~~~~~~v~~ 121 (560)
T 3h99_A 79 -------------GI------------------T------PEQMIGEMSQEHQTDFAGFNISYDNYHSTHSEENRQLSEL 121 (560)
T ss_dssp -------------TS------------------C------HHHHHHHHHHHHHHHHHHTTCCCSEEEESSSHHHHHHHHH
T ss_pred -------------CC------------------C------HHHHHHHHHHHHHHHHHHcCCCCCCceeCCCHHHHHHHHH
Confidence 00 1 1345677788999999999999954 333 467788999
Q ss_pred HHHHHHhCCCceeecccEEEecc-----------------------C---------------------------------
Q 007251 338 VIDELSKQGLVEESQGARVIFIE-----------------------G--------------------------------- 361 (611)
Q Consensus 338 vi~~L~~~G~~~e~dGa~~~~~~-----------------------g--------------------------------- 361 (611)
++++|.++|++|+.++.+|+... |
T Consensus 122 ~~~~L~~~G~iy~~~~~~~~~~~~~~~l~~~~v~g~cp~c~~~~~~gd~ce~cg~~~~~~~l~~~~~~~~g~~~~~~~~~ 201 (560)
T 3h99_A 122 IYSRLKENGFIKNRTISQLYDPEKGMFLPDRFVKGTCPKCKSPDQYGDNCEVCGATYSPTELIEPKSVVSGATPVMRDSE 201 (560)
T ss_dssp HHHHHHHTTCEEEEEEEEEEETTTTEECCGGGEEEECTTTCCSSEETTBCTTTCCBCCGGGCEEEEETTTCCCCEEEEEE
T ss_pred HHHHHHHCCCEEEeeeeEeecCccCceecchhcCCCCCCCCCcccccchhhhccccCChhhhcCCccccCCCCceEEecc
Confidence 99999999999999988887331 0
Q ss_pred ------------------------------------CCCCeEEEccC---Ccc--------cccCcc--hhHH----Hhh
Q 007251 362 ------------------------------------VNIPLIIVKSD---GGF--------NYASTD--LAAL----WYR 388 (611)
Q Consensus 362 ------------------------------------~~~d~Vl~ksD---G~~--------tY~t~D--iA~~----~~r 388 (611)
...|..+.|+. |.+ .|.--| ++|. .|.
T Consensus 202 ~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~D~~IsR~~~~WG~~iP~~~~~viyvW~da~~~y~s~~~~~~ 281 (560)
T 3h99_A 202 HFFFDLPSFSEMLQAWTRSGALQEQVANKMQEWFESGLQQWDISRDAPYFGFEIPNAPGKYFYVWLDAPIGLMGSFKNLC 281 (560)
T ss_dssp EEEECGGGGHHHHHHHHHTSCSCHHHHHHHHHHHHHCCCCEECEEESSCSSCBCTTCTTEEECHHHHHHHHHHHHHHHHH
T ss_pred eEEEEHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCCCCCccccCCcCCeeCCCCCCceEEeCcccchhHHHHHHHHh
Confidence 01122233332 221 111111 2221 010
Q ss_pred --------hh-ccCCC---eEEEEEeCCccccHHHHH-HHHHHcCCCCCCCCCCCcEEEEeeeeEEcCCCceeeeccCCc
Q 007251 389 --------LN-EEKAE---WIIYVTDVGQQLHFDMVF-SAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEV 455 (611)
Q Consensus 389 --------~~-~~~~d---~iIyV~g~dq~~hf~~l~-~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~dG~kmSkR~G~~ 455 (611)
+. -|+.| .+++|+|.||..+....+ +++.++|+. ++. ..+.+|+|+. +|+|||||+||+
T Consensus 282 ~~~~~~~~~~~~wp~~~~~~~~~~~G~D~~~fh~~~~~a~l~~~g~~-----~p~--~v~~hg~v~~-~G~KMSKS~GNv 353 (560)
T 3h99_A 282 DKRGDSVSFDEYWKKDSTAELYHFIGKDIVYFLSLFWPAMLEGSNFR-----KPS--NLFVHGYVTV-NGAKMSKSRGTF 353 (560)
T ss_dssp HHHTCSSHHHHHHBTTCCSEEEEEEEGGGHHHHHTHHHHHHHHTTBC-----CCS--EEEEECCEEE-TTEECCTTTTCC
T ss_pred hccCChhhHHHhCcCCCCceeEEEeccccchhHHHHHHHHHHhCCCC-----CCc--EEEEEeEEEe-CCeeccccCCCc
Confidence 10 12233 678999999976333232 567788983 222 2334588886 899999999999
Q ss_pred ccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhcCcchhhhhhccCCC-C-Cccccccccccc-ccCChHHHHHH
Q 007251 456 VRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNR-L-TNYTFSFDQMLN-DKGNTAVYLLY 532 (611)
Q Consensus 456 v~l~dLldea~~~a~~~~~~r~~~~~~~~~e~~~~a~~vg~~avRy~~L~~~~-~-~~~~Fd~d~~~~-~~gnt~~ylqY 532 (611)
|++.|++++ +|+||+||++++..+ . .|++||++.+.+ .+.+....++|
T Consensus 354 v~p~d~i~~-----------------------------~GaDalR~~ll~~~~~~~~d~~f~~~~~~~~~~~~l~~~l~n 404 (560)
T 3h99_A 354 IKASTWLNH-----------------------------FDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVNKVVN 404 (560)
T ss_dssp CBHHHHHHH-----------------------------SCHHHHHHHHHHHCCSSCCCEEECHHHHHHHHHHHCCCCCTH
T ss_pred CCHHHHHHH-----------------------------cCcHHHHHHHHHhCCCCCCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 999999998 799999999999866 4 699999999876 34455556777
Q ss_pred HHHHHHHHHHHhCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhchhhccc
Q 007251 533 AHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNCQ 609 (611)
Q Consensus 533 a~aRi~SIlrKa~~~~~~~~~~~~~~l~~~~e~~L~~~l~~fp~~v~~a~~~~~P~~l~~yL~~La~~fn~fY~~~~ 609 (611)
+++|++++++|...+. ++ ..+.+++|+..+..+++.+.+++++++|+.+++++++|+..+|.||+.++
T Consensus 405 ~~~R~~~~~~~~~~~~--~~-------~~~~d~~ll~~l~~~~~~v~~~~e~~~~~~a~~~l~~l~~~~n~Yi~~~k 472 (560)
T 3h99_A 405 LASRNAGFINKRFDGV--LA-------SELADPQLYKTFTDAAEVIGEAWESREFGKAVREIMALADLANRYVDEQA 472 (560)
T ss_dssp HHHTTHHHHHHHSTTB--CC-------SSCSCHHHHHHHHHTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCC--CC-------CccccHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 7889999998874321 11 12346789999999999999999999999999999999999999998765
No 10
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=100.00 E-value=3.5e-36 Score=334.05 Aligned_cols=325 Identities=16% Similarity=0.131 Sum_probs=237.0
Q ss_pred CceEEEEecCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCccccchHHHH
Q 007251 183 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 262 (611)
Q Consensus 183 ~~kV~Ve~~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l 262 (611)
.+++.|...+|||+|++||||+|++++||+++|+++..||+|.+...++|+|..+-.
T Consensus 2 ~~~~~i~~p~py~~g~lHiGH~r~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~----------------------- 58 (500)
T 2d5b_A 2 EKVFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYR----------------------- 58 (500)
T ss_dssp CCEEEEECCCEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHH-----------------------
T ss_pred CCcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCceeeecccCCchHHHHH-----------------------
Confidence 368999999999999999999999999999999999999999999877777653211
Q ss_pred HHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHhcCCeeeec-c--cccccCcHHHHH
Q 007251 263 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEK-G--ESFYNPYIPGVI 339 (611)
Q Consensus 263 ~~~y~~~~~~~~~d~~~~~~a~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~LgV~f~~~-~--Es~y~~~v~~vi 339 (611)
++.+. |.+ ++++++.+.+.|+++|++|||.+|++ . +..|.+.+++++
T Consensus 59 -----~a~~~--------------------g~~-----~~~~~~~~~~~~~~~~~~lgi~~d~~~~t~~~~~~~~~~~~~ 108 (500)
T 2d5b_A 59 -----AAQAA--------------------GED-----PKAFVDRVSGRFKRAWDLLGIAYDDFIRTTEERHKKVVQLVL 108 (500)
T ss_dssp -----HHHHH--------------------TSC-----HHHHHHHHHHHHHHHHHHTTCCCSEEEETTSHHHHHHHHHHH
T ss_pred -----HHHHc--------------------CCC-----HHHHHHHHHHHHHHHHHHhCCcCCCCcccCCHHHHHHHHHHH
Confidence 11110 111 23567888899999999999999653 2 344888999999
Q ss_pred HHHHhCCCceee--cccEEEecc-----CC---------C----------------------------------------
Q 007251 340 DELSKQGLVEES--QGARVIFIE-----GV---------N---------------------------------------- 363 (611)
Q Consensus 340 ~~L~~~G~~~e~--dGa~~~~~~-----g~---------~---------------------------------------- 363 (611)
++|.++|++|+. .|.+|+.++ ++ .
T Consensus 109 ~~L~~~G~iy~~~~~~~~~~~~~~~~~~~~l~~g~c~~~~~~v~~~~~~~wf~~l~~~~~~l~~~~~~~~~~~~p~~~~~ 188 (500)
T 2d5b_A 109 KKVYEAGDIYYGEYEGLYCVSCERFYTEKELVEGLCPIHGRPVERRKEGNYFFRMEKYRPWLQEYIQENPDLIRPEGYRN 188 (500)
T ss_dssp HHHHHTTCEEEEEEEEEEETTTTEECCTTTSBTTBCTTTCSBCEEEEEEEEEECGGGGHHHHHHHHHTCTTSEESHHHHH
T ss_pred HHHHHCCCEEecceEEecCCCcCcccCchhccCCcCCCCCCeeeEEecCceEEEcHHHHHHHHHHHHhCCCeeCCHHHHH
Confidence 999999999986 465554332 10 0
Q ss_pred ----------CCeEEEc--cC---Cccc----------ccCc------chhHHHhh-hh-ccCCCeEEEEEeCCccccHH
Q 007251 364 ----------IPLIIVK--SD---GGFN----------YAST------DLAALWYR-LN-EEKAEWIIYVTDVGQQLHFD 410 (611)
Q Consensus 364 ----------~d~Vl~k--sD---G~~t----------Y~t~------DiA~~~~r-~~-~~~~d~iIyV~g~dq~~hf~ 410 (611)
.|..+-| ++ |.+. |+.. .++++..+ +. .++.| ||+.|.||.. |.
T Consensus 189 ~~~~~l~~~l~Dw~iSRp~~~~~WG~piP~~~~~v~~vWfds~~~y~~~~g~~~~~~~~~~~p~d--i~~~G~D~~~-fh 265 (500)
T 2d5b_A 189 EVLAMLAEPIGDLSISRPKSRVPWGIPLPWDENHVTFVWFDALLNYVSALDYPEGEAYRTFWPHA--WHLIGKDILK-PH 265 (500)
T ss_dssp HHHHHHTSCCCCEECEEETTTCCSSCEETTEEEEEECHHHHHHTHHHHTTTTTTCHHHHHHGGGE--EEEEEGGGHH-HH
T ss_pred HHHHHHhcCCCCeecccccccccCccccCCCCCCeeEEccccchhhHHHcCCCCCchHHHcCCCe--EEEEeechhh-hH
Confidence 1223333 22 3211 0000 01111100 10 13444 8999999977 55
Q ss_pred HHH--HHHHHcCCCCCCCCCCCcEEEEeeeeEEcCCCceeeeccCCcccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHH
Q 007251 411 MVF--SAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELE 488 (611)
Q Consensus 411 ~l~--~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~dG~kmSkR~G~~v~l~dLldea~~~a~~~~~~r~~~~~~~~~e~~ 488 (611)
.++ +.++++|+. +...+.|. |+|+.++|+|||||+||+|++.|++++
T Consensus 266 ~~~~~a~~~~~g~~-----~~~~v~~~--G~v~~~~G~KMSKS~GN~i~p~d~i~~------------------------ 314 (500)
T 2d5b_A 266 AVFWPTMLKAAGIP-----MYRHLNVG--GFLLGPDGRKMSKTLGNVVDPFALLEK------------------------ 314 (500)
T ss_dssp HTHHHHHHHHHTCC-----CCSEEEEE--CCEECTTSSCCCTTTTCCCCHHHHHHH------------------------
T ss_pred HHHHHHHHHHcCCC-----CCcEEEEC--ceEEeCCCCcccccCCCCCCHHHHHHh------------------------
Confidence 555 556678874 34567776 779977999999999999999999998
Q ss_pred HHHhhcCcchhhhhhcc-CCCCCcccccccccccccC-ChHHHHHHHHHHHHHHHHHhCCChhhhhhcCCCCCCCHHHHH
Q 007251 489 QTAEAVGYGAAKYFDLK-NNRLTNYTFSFDQMLNDKG-NTAVYLLYAHARICSIIRKSGKDIEELKKTGSLVLDHADERA 566 (611)
Q Consensus 489 ~~a~~vg~~avRy~~L~-~~~~~~~~Fd~d~~~~~~g-nt~~ylqYa~aRi~SIlrKa~~~~~~~~~~~~~~l~~~~e~~ 566 (611)
+|+|++||++++ .++.++++||++.+.+..+ ...+.++++++|+.+++++...+. ++ .+.+++
T Consensus 315 -----~g~DalR~~ll~~~~~~~d~~fs~~~~~~~~~~~l~~~l~n~~~r~~~~~~~~~~~~--~~--------~~~~~~ 379 (500)
T 2d5b_A 315 -----YGRDALRYYLLREIPYGQDTPVSEEALRTRYEADLADDLGNLVQRTRAMLFRFAEGR--IP--------EPVAGE 379 (500)
T ss_dssp -----HCHHHHHHHHHHHSCTTSCEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHSTTB--CC--------CCCCCG
T ss_pred -----cCcHHHHHHHHhcCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CC--------chhHHH
Confidence 699999999998 6789999999999876432 122345677789999888764211 11 111356
Q ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhchhhccc
Q 007251 567 LGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNCQ 609 (611)
Q Consensus 567 L~~~l~~fp~~v~~a~~~~~P~~l~~yL~~La~~fn~fY~~~~ 609 (611)
|+..+..+++.+.+++++++|+.++.+|++++..+|.||+.++
T Consensus 380 l~~~l~~~~~~v~~a~~~~~~~~a~~~l~~l~~~~n~y~~~~k 422 (500)
T 2d5b_A 380 ELAEGTGLAGRLRPLVRELKFHVALEEAMAYVKALNRYINEKK 422 (500)
T ss_dssp GGGGGGGHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8888999999999999999999999999999999999998653
No 11
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=100.00 E-value=2.5e-35 Score=329.06 Aligned_cols=331 Identities=15% Similarity=0.141 Sum_probs=238.7
Q ss_pred CCCceEEEEecCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCccccchHH
Q 007251 181 LRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIG 260 (611)
Q Consensus 181 ~~~~kV~Ve~~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~i~ 260 (611)
+..+++.|--+-|||+|++||||+|++++||+|+|+++..||+|.++..++|+|..+..-+
T Consensus 9 ~~~~~~~i~t~~P~~ng~lHiGHa~~~i~~D~l~R~~r~~G~~V~~~~g~D~~G~~i~~~a------------------- 69 (524)
T 2x1l_A 9 GGSEPFYITTAIAYPNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAETA------------------- 69 (524)
T ss_dssp --CCEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHH-------------------
T ss_pred CCCCCEEEeeCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCceeeeCCcCcccHHHHHHH-------------------
Confidence 3456888989999999999999999999999999999999999999988888775332110
Q ss_pred HHHHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHhcCCeee-eccccc--ccCcHHH
Q 007251 261 ELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLE-EKGESF--YNPYIPG 337 (611)
Q Consensus 261 ~l~~~y~~~~~~~~~d~~~~~~a~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~LgV~f~-~~~Es~--y~~~v~~ 337 (611)
.+ .|.+ ++++++.+.+.|++++++|||.+| +..++. |.+.+.+
T Consensus 70 ---------~~--------------------~g~~-----~~~~~~~~~~~~~~~~~~lgi~~d~~~~t~~~~~~~~v~~ 115 (524)
T 2x1l_A 70 ---------AK--------------------EGIP-----AAELARRNSDVFQRLQEKLNISFDRFIRTSDADHYEASKA 115 (524)
T ss_dssp ---------HH--------------------HTSC-----HHHHHHHHHHHHHHHHHHTTCCCSEEEETTSHHHHHHHHH
T ss_pred ---------HH--------------------cCCC-----HHHHHHHHHHHHHHHHHHcCCcCCCCeecCCHHHHHHHHH
Confidence 00 0111 245688888999999999999996 444544 8889999
Q ss_pred HHHHHHhCCCceeecccEEEecc------------C--------C-CCCeEEEccC------------------Cccc--
Q 007251 338 VIDELSKQGLVEESQGARVIFIE------------G--------V-NIPLIIVKSD------------------GGFN-- 376 (611)
Q Consensus 338 vi~~L~~~G~~~e~dGa~~~~~~------------g--------~-~~d~Vl~ksD------------------G~~t-- 376 (611)
++++|.++|++|+.+|.+|+... | . ..+.+.+.++ +.+.
T Consensus 116 ~~~~L~~~G~iY~~~~~v~~~~~~~t~l~~~ev~~g~~G~~c~~~~g~~v~~~~~~qwF~~l~~~~~~l~~~~~~~~~~i 195 (524)
T 2x1l_A 116 IWKRMADAGDIYLDAYKGWYSIRDERFFTENETTEQPDGTRIATETGAPVTWTEEQTYFFRLSAYTDRLLALYEEHPEFI 195 (524)
T ss_dssp HHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEEECTTSCEEETTTCCBEEEEEEEEEEECGGGSHHHHHHHHHHCGGGE
T ss_pred HHHHHHHCCCEEeeeeeeeccCccCccccHHHhccCCCCCccccccCCcceEEecCCeEeeHHHHHHHHHHHHHhCCCee
Confidence 99999999999999998887532 1 0 0111111110 0000
Q ss_pred --------------ccCcchhHHHhh--------------------------------------h-hccCCCeEEEEEeC
Q 007251 377 --------------YASTDLAALWYR--------------------------------------L-NEEKAEWIIYVTDV 403 (611)
Q Consensus 377 --------------Y~t~DiA~~~~r--------------------------------------~-~~~~~d~iIyV~g~ 403 (611)
+-.+|.+-.+.| + ..+++| +++.|.
T Consensus 196 ~p~~~~~~~~~~~~~~l~Dw~iSRqr~~WG~~iP~~~~~~~yvWfds~~~~~~~~g~p~~~~~~~~~~~p~d--i~~~G~ 273 (524)
T 2x1l_A 196 GPDARRNEIVSFVSGGLKDLSISRTTFDWGVPVPDHPDHVMYVWVDALTNYLTGVGFPDTESESFRRYWPAD--LHMIGK 273 (524)
T ss_dssp ESHHHHHHHHHHHTTCCCCEECEESSCCSSCEETTEEEEEECHHHHHHTHHHHTTTTTCTTSHHHHHHCSCS--EEEEEG
T ss_pred CCHHHHHHHHHHHHcCCcccceECCCCCcCccCCCCCCCEEEEecCCchHHHHHcCCCCCchHHHHhhCCCe--EEEEee
Confidence 001111100000 0 012344 777888
Q ss_pred CccccHHHHH--HHHHHcCCCCCCCCCCCcEEEEeeeeEEcCCCceeeeccCCcccHHHHHHHHHHHHHHHHHHhcCCCC
Q 007251 404 GQQLHFDMVF--SAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKE 481 (611)
Q Consensus 404 dq~~hf~~l~--~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~dG~kmSkR~G~~v~l~dLldea~~~a~~~~~~r~~~~~ 481 (611)
||. .|..++ +.+.++|+.+ +...+.| |+|+. +|+|||||+||+|++.|++++
T Consensus 274 D~~-~fh~~~~~a~l~~~g~~~----~~~v~~h---G~v~~-~G~KMSKS~GN~v~p~d~i~~----------------- 327 (524)
T 2x1l_A 274 DII-RFHTVYWPAFLMSAGLPL----PKRIFAH---GWLLN-RGEKMSKSIGNVVDPVNLVDT----------------- 327 (524)
T ss_dssp GGH-HHHHTHHHHHHHHHTCCC----CSCEEEE---CCEEE-CSCSEETTTEESSCHHHHHHH-----------------
T ss_pred chh-HhHHHHHHHHHHHCCCCC----CcEEEEC---cEEEe-CCcccCCcCCCCCCHHHHHHH-----------------
Confidence 886 455544 4456678742 2233444 77876 799999999999999999998
Q ss_pred CCHHHHHHHHhhcCcchhhhhhcc-CCCCCccccccccccccc-CChHHHHHHHHHHHHHHHHHhCCChhhhhhcCCCCC
Q 007251 482 WTEEELEQTAEAVGYGAAKYFDLK-NNRLTNYTFSFDQMLNDK-GNTAVYLLYAHARICSIIRKSGKDIEELKKTGSLVL 559 (611)
Q Consensus 482 ~~~~e~~~~a~~vg~~avRy~~L~-~~~~~~~~Fd~d~~~~~~-gnt~~ylqYa~aRi~SIlrKa~~~~~~~~~~~~~~l 559 (611)
+|+|++||++|+ ..+.+|++||++.+.+.. .+..+.++++..|+.+++++...+. ++ . ...
T Consensus 328 ------------~g~DalR~~ll~~~~~~~d~~fs~~~l~~~~~~~l~n~l~n~~~r~~~~~~~~~~~~--~~--~-~~~ 390 (524)
T 2x1l_A 328 ------------FGLDQVRYFLLREVPFGQDGSYNEDAIIGRVNADLANELGNLAQRSLSMVAKNLGAA--VP--D-PGE 390 (524)
T ss_dssp ------------HCHHHHHHHHHHHSCTTSCEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHSTTB--CC--C-CCC
T ss_pred ------------cChHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CC--C-ccc
Confidence 699999999998 678999999999987643 3444557777889999988753221 11 0 112
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhchhhccc
Q 007251 560 DHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNCQ 609 (611)
Q Consensus 560 ~~~~e~~L~~~l~~fp~~v~~a~~~~~P~~l~~yL~~La~~fn~fY~~~~ 609 (611)
.++.+++|+..+..+++.+.+++++++|+.++.+|++|+..+|.||+.|+
T Consensus 391 ~~~~d~~l~~~l~~~~~~v~~a~~~~~~~~a~~~l~~l~~~~n~y~~~~k 440 (524)
T 2x1l_A 391 FTDEDTALLAAADALLERVREHFDVPAMHLALEAIWSVLGAANRYFSAQE 440 (524)
T ss_dssp CCHHHHHHHHHHHTHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 35778899999999999999999999999999999999999999998764
No 12
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=100.00 E-value=5.7e-32 Score=293.36 Aligned_cols=301 Identities=13% Similarity=0.061 Sum_probs=202.1
Q ss_pred CceEEEEecCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCccccchHHHH
Q 007251 183 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 262 (611)
Q Consensus 183 ~~kV~Ve~~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l 262 (611)
+++|.++.|+|||+|++||||+|++|+||+|+|+|+..||+|..+++++|+|..+-..+
T Consensus 37 ~~~v~~y~~gPt~yg~~HiGHar~~v~~DvlaR~lr~~G~~V~~~~~~dd~g~ki~~~A--------------------- 95 (414)
T 3c8z_A 37 GPTATMYVCGITPYDATHLGHAATYLTFDLVHRLWLDAGHTVQYVQNVTDVDDPLFERA--------------------- 95 (414)
T ss_dssp CSEEEEEECCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCSCHHHHHHH---------------------
T ss_pred CCCceEEeCCCcCCCCcCccccHHHHHHHHHHHHHHHcCCCEEeCCCCCCccHHHHHHH---------------------
Confidence 56899999999999999999999999999999999999999999999999985332111
Q ss_pred HHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHhcCCe-eee-cccccccCcHHHHHH
Q 007251 263 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVD-LEE-KGESFYNPYIPGVID 340 (611)
Q Consensus 263 ~~~y~~~~~~~~~d~~~~~~a~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~LgV~-f~~-~~Es~y~~~v~~vi~ 340 (611)
.+ .|. .|+++++.+.+.|++++++|||. +++ ..++.|.+.++++++
T Consensus 96 -------~~--------------------~g~-----~~~~~~~~~~~~~~~~~~~Lgi~~~d~~~r~t~~~~~~~~~~~ 143 (414)
T 3c8z_A 96 -------ER--------------------DGI-----DWRTLGDRETQLFREDMAALRVLPPHDYVAATDAIAEVVEMVE 143 (414)
T ss_dssp -------HH--------------------HTC-----CHHHHHHHHHHHHHHHHHHTTCCCCSEEEEGGGCHHHHHHHHH
T ss_pred -------HH--------------------cCC-----CHHHHHHHHHHHHHHHHHHcCCCCCcceecccchHHHHHHHHH
Confidence 00 011 24567888999999999999999 865 456778888999999
Q ss_pred HHHhCCCceeec----ccEEEeccCC---------CCCeEEEc--c-CCcc-cc---cCcchhHHHhhhh----------
Q 007251 341 ELSKQGLVEESQ----GARVIFIEGV---------NIPLIIVK--S-DGGF-NY---ASTDLAALWYRLN---------- 390 (611)
Q Consensus 341 ~L~~~G~~~e~d----Ga~~~~~~g~---------~~d~Vl~k--s-DG~~-tY---~t~DiA~~~~r~~---------- 390 (611)
.|.++|++|+.+ |.+||+++.. +.+.++.. + +|.+ +| ..+|++ .||..
T Consensus 144 ~L~~kG~~Y~~~~~~e~~~~f~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~k~~~~D~~--lWk~~~pg~~~Wda~ 221 (414)
T 3c8z_A 144 KLLASGAAYIVEDAEYPDVYFRADATAQFGYESGYDRDTMLTLFAERGGDPDRPGKSDQLDAL--LWRAERPGEPSWPSP 221 (414)
T ss_dssp HHHHHTSEEECSCSSCCCEEECTTSSTTTTTTTCCCHHHHHHHHHHTTCCTTCTTCSSTTCEE--EEEECCTTSCCBCCT
T ss_pred HHHHCCCEEeccCCcCCCEEEEchhhhhhHhhcCCCHHHHHHHHhhccccccccccCCcchhh--hcCCCCCCCCCCCCC
Confidence 999999999998 9999987521 11111111 1 1211 22 122322 23221
Q ss_pred ------------------ccCCCeEEEEEeCCccc-cHHHHHHHHHHc-CCCCCCCCCCCcEEEEeeeeEEcCCCceeee
Q 007251 391 ------------------EEKAEWIIYVTDVGQQL-HFDMVFSAAKRA-GWLSADDSTYPKASHVGFGLVLGEDGKRLRT 450 (611)
Q Consensus 391 ------------------~~~~d~iIyV~g~dq~~-hf~~l~~~~~~l-G~~~~~~~~~~~~~Hv~~g~V~~~dG~kmSk 450 (611)
-++...-|++.|.||.. |+....+.+.++ |.. ++...+.|. |+|+ .+|+||||
T Consensus 222 ~g~g~pgWhiec~a~~~~~~g~~~di~~~G~D~~~~H~~~~~a~~~a~~g~~----~~~~~~~h~--g~v~-~~G~KMSK 294 (414)
T 3c8z_A 222 FGRGRPGWHVECSAIALTRIGTGLDIQGGGSDLIFPHHEYSAAHAESVTGER----RFARHYVHT--GMIG-WDGHKMSK 294 (414)
T ss_dssp TCSEEECHHHHHHHHHHHHTCSCEEEEEEEGGGTTTHHHHHHHHHHHHHCCS----CSEEEEEEE--CCBC---------
T ss_pred CCCCCCCccchhHHHHHHhcCCCceEEEeccccccHHHHHHHHHHHHhcCCC----CcCeEEEEc--CEEe-cCCeEccc
Confidence 01111224455887654 544444445555 763 334455665 6676 48999999
Q ss_pred ccCCcccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhcCcchhhhhhccCCCCCcccccccccccccCChHHHH
Q 007251 451 RFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYL 530 (611)
Q Consensus 451 R~G~~v~l~dLldea~~~a~~~~~~r~~~~~~~~~e~~~~a~~vg~~avRy~~L~~~~~~~~~Fd~d~~~~~~gnt~~yl 530 (611)
|+||+|++.|+++++ +|+|++||++|+.++.++++|+++.+.+...
T Consensus 295 S~GN~v~~~~ll~~g----------------------------~g~D~lR~~ll~~~~~~d~~fs~~~l~~~~~------ 340 (414)
T 3c8z_A 295 SRGNLVLVSQLRAQG----------------------------VDPSAIRLGLFSGHYREDRFWSNEVLDEANA------ 340 (414)
T ss_dssp -----CBHHHHHHTT----------------------------CCHHHHHHHHHTSCTTSCBCCCHHHHHHHHH------
T ss_pred ccCCcCCHHHHhhcc----------------------------CCcchheeEEEecCcCCCCCcCHHHHHHHHH------
Confidence 999999999999973 6999999999998889999999998765321
Q ss_pred HHHHHHHHHHHHHhCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HhcchHHHHHHHHHHHHHHhc
Q 007251 531 LYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEAL-TNLLPNVVCEYLYNLSEYFTR 603 (611)
Q Consensus 531 qYa~aRi~SIlrKa~~~~~~~~~~~~~~l~~~~e~~L~~~l~~fp~~v~~a~-~~~~P~~l~~yL~~La~~fn~ 603 (611)
.+.|+.+.+++.. .+ .+..+.+.+.+++ ++++.+.++.-+++++...|+
T Consensus 341 --~l~~l~n~~~~~~---------~~-------------~~~~~~~~v~~a~~d~~~~~~Al~~i~~~~~~~n~ 390 (414)
T 3c8z_A 341 --RLARWRSATALPE---------AP-------------DATDVIARVRQYLADDLDTPKALAALDGWCTDALS 390 (414)
T ss_dssp --HHHHHHHHHTSSC---------BS-------------CCHHHHHHHHHHHHBTCCHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHhcc---------ch-------------hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Confidence 2345555553320 00 0134566778888 799999999999999999987
No 13
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=100.00 E-value=2.8e-31 Score=289.22 Aligned_cols=303 Identities=18% Similarity=0.216 Sum_probs=220.4
Q ss_pred CCceEEEEecCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCccccchHHH
Q 007251 182 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 261 (611)
Q Consensus 182 ~~~kV~Ve~~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~ 261 (611)
.+++|.+++|+|||++++||||+|++|++|+|+|+|+..||+|..+.+++|+|..+-.
T Consensus 22 ~~~~v~~YvcGPtvy~~~HIGHaR~~v~~Dvl~R~lr~~Gy~V~~v~n~dD~ddKIi~---------------------- 79 (462)
T 3tqo_A 22 ESGKVKLYVCGMTVYDYMHIGHGRSWIIFDMVVRYLRMRGYEVTFVRNITDIDDKIIK---------------------- 79 (462)
T ss_dssp STTEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEECBBCCCHHHHH----------------------
T ss_pred CCCeEEEEeCCCcCCCCCchhhhHHHHHHHHHHHHHHHcCCceEEecCcCCCCcHHHH----------------------
Confidence 4678999999999999999999999999999999999999999999999999854321
Q ss_pred HHHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHhcCCeee-ec-ccccccCcHHHHH
Q 007251 262 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLE-EK-GESFYNPYIPGVI 339 (611)
Q Consensus 262 l~~~y~~~~~~~~~d~~~~~~a~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~LgV~f~-~~-~Es~y~~~v~~vi 339 (611)
++.+ .|. .|+++++.+.+.|++++++|||.++ ++ ..+.|.+.+.+++
T Consensus 80 ------~A~~--------------------~g~-----~~~e~a~~~~~~f~~d~~~LgI~~d~~~praTe~i~~i~~~i 128 (462)
T 3tqo_A 80 ------RAGE--------------------NKE-----SPAALAERFIQILHEDEKALRVLSPDQEPRATQYVPEIIKLI 128 (462)
T ss_dssp ------HHHH--------------------TTS-----CHHHHHHHHHHHHHHHHHHHTCCCCSBCCBGGGCHHHHHHHH
T ss_pred ------HHHH--------------------cCC-----CHHHHHHHHHHHHHHHHHHcCCCCCccccChhhHHHHHHHHH
Confidence 1111 111 1677889999999999999999994 44 4688888999999
Q ss_pred HHHHhCCCceee-cccEEEecc-----C-----------------------CCCCeEEEcc--CCcccccCcc-------
Q 007251 340 DELSKQGLVEES-QGARVIFIE-----G-----------------------VNIPLIIVKS--DGGFNYASTD------- 381 (611)
Q Consensus 340 ~~L~~~G~~~e~-dGa~~~~~~-----g-----------------------~~~d~Vl~ks--DG~~tY~t~D------- 381 (611)
++|.++|++|+. +|.+||+++ | ++.|++|+|. +|.+.+.++-
T Consensus 129 ~~L~ekG~aY~~~~g~Vyfdv~~~~~yg~Ls~~~~~~~~~g~r~~~~~~K~~p~DF~LWK~~k~~ep~W~spwG~GrPGW 208 (462)
T 3tqo_A 129 QKLLDNQYAYTGQNGDVFFDVRRFKDYGKLSHRHLDELQAGARVEVSDSKRDPLDFVLWKKAKPGEPKWDSPWGEGRPGW 208 (462)
T ss_dssp HHHHHHTSEEECTTSCEEECTTTCTTTTTTTTCSCC------------CCSSTTCEEEEEECCTTSCCBCCTTCSEEECH
T ss_pred HHHHHCCCEEEecCCcEEeccccccccccccCCChHHhhccCccccccccCCccccceeeecCCCCCcccCCCCCCCCCC
Confidence 999999999998 799999764 1 1247788775 5777666531
Q ss_pred ---hhHHHhhhhccCCCeEEEEEeCCccccHHHH---HHHHHH-cCCCCCCCCCCCcEEEEeeeeEEcCCCceeeeccCC
Q 007251 382 ---LAALWYRLNEEKAEWIIYVTDVGQQLHFDMV---FSAAKR-AGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSE 454 (611)
Q Consensus 382 ---iA~~~~r~~~~~~d~iIyV~g~dq~~hf~~l---~~~~~~-lG~~~~~~~~~~~~~Hv~~g~V~~~dG~kmSkR~G~ 454 (611)
+++...++ .| ..++|+|.+++..|+++ .+..++ .|. +++..|.|. |+|. .+|+|||||.||
T Consensus 209 HiEcsam~~~~--lG--~~~dih~gG~Dl~FpHheneiaqs~a~~g~-----p~~~~w~H~--g~v~-~~G~KMSKSlGN 276 (462)
T 3tqo_A 209 HIECSAMSSSI--LG--QPFDIHGGGLDLKFPHHENEIAQSEAGEEK-----PFVKLWMHA--GLLE-INKEKMSKSLGN 276 (462)
T ss_dssp HHHHHHHHHHH--HC--SSEEEEEEEGGGTTTHHHHHHHHHHHHHSS-----CCEEEEEEE--CCEE-ETTEECCTTTTC
T ss_pred ceehHHHHHHh--cC--CCeEEEccccccccHHHHhHHHHHHHHcCC-----CcceEEEEc--cEEe-cCCcCccccCCC
Confidence 22222222 23 23778888887777654 222333 354 467788997 6665 689999999999
Q ss_pred cccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhcCcchhhhhhccCCCCCcccccccccccccCChHHHHHHHH
Q 007251 455 VVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAH 534 (611)
Q Consensus 455 ~v~l~dLldea~~~a~~~~~~r~~~~~~~~~e~~~~a~~vg~~avRy~~L~~~~~~~~~Fd~d~~~~~~gnt~~ylqYa~ 534 (611)
+|++.|++++ +|++++||++|+.++.++++|+++.+.+.. -.+
T Consensus 277 ~i~~~dll~~-----------------------------~g~dalR~~lls~~yr~~l~fs~~~l~~a~--------~~l 319 (462)
T 3tqo_A 277 IISIREALKE-----------------------------SDVEVLRYFLLSGHYRNPLSYSKENLENGR--------LAL 319 (462)
T ss_dssp CCBHHHHHHH-----------------------------SCHHHHHHHHHHSCTTSCEEECHHHHHHHH--------HHH
T ss_pred cccHHHHHhh-----------------------------cChHHhhhhhccCCCCCCcCcCHHHHHHHH--------HHH
Confidence 9999999998 799999999999999999999999876422 123
Q ss_pred HHHHHHHHHhCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHhchh
Q 007251 535 ARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALT-NLLPNVVCEYLYNLSEYFTRFY 605 (611)
Q Consensus 535 aRi~SIlrKa~~~~~~~~~~~~~~l~~~~e~~L~~~l~~fp~~v~~a~~-~~~P~~l~~yL~~La~~fn~fY 605 (611)
.|+...++..... .+ + .+..+.+.+.+|++ ++....+...|+++++..|+..
T Consensus 320 ~rl~~~~~~~~~~-------------~~-~-----~~~~~~~~~~~a~~dD~nt~~a~~~l~~~~~~~n~~~ 372 (462)
T 3tqo_A 320 ERFYLALRGLPVV-------------NH-E-----KTSSYTDRFYEAMDDDFNTPIAFALLFEMVREINRFR 372 (462)
T ss_dssp HHHHHHHTTCCC-------------------------CHHHHHHHHHHTBTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhc-------------cc-h-----hHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHhhhh
Confidence 4555444432110 00 0 12234455566665 5666667777777777777654
No 14
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=99.97 E-value=7.9e-30 Score=293.85 Aligned_cols=326 Identities=12% Similarity=0.137 Sum_probs=234.8
Q ss_pred ceEEEEecCCCCCCCCcchhhhH-HHHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCccccchHHHH
Q 007251 184 KKAVVDFSSPNIAKEMHVGHLRS-TIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 262 (611)
Q Consensus 184 ~kV~Ve~~SpNp~kplHvGHlRs-aiiGDsLariL~~~Gy~V~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l 262 (611)
+++.|....|||+|++||||+|+ ++++|+++|++|..||+|......+++|..+..-+.
T Consensus 2 ~~~~itt~~Py~nG~lHiGHa~~~~i~~DiiaRy~rm~G~~V~~v~G~D~hG~pie~~A~-------------------- 61 (722)
T 1rqg_A 2 VRYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRAL-------------------- 61 (722)
T ss_dssp CEEEEEECCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHH--------------------
T ss_pred CCEEEecCCCCCCCchhhchhhccHHHHHHHHHHHHhcCCceEecceeCCCCHHHHHHHH--------------------
Confidence 57899999999999999999999 999999999999999999999999999875432210
Q ss_pred HHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHhcCCeeeecc---cccccCcHHHHH
Q 007251 263 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKG---ESFYNPYIPGVI 339 (611)
Q Consensus 263 ~~~y~~~~~~~~~d~~~~~~a~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~LgV~f~~~~---Es~y~~~v~~vi 339 (611)
+. .. + ++++++.+...|++++++|||.+|++. +..|...+++++
T Consensus 62 --------k~-G~------------------~------p~e~~~~~~~~~~~~~~~lgis~D~~~rT~d~~~~~~v~~~f 108 (722)
T 1rqg_A 62 --------KE-GR------------------S------PREIVDEFHEQIKITFQRAKISFDFFGRTELPIHYKLSQEFF 108 (722)
T ss_dssp --------HH-TC------------------C------HHHHHHHHHHHHHHHHHHHTCCCSEEEETTSHHHHHHHHHHH
T ss_pred --------Hc-CC------------------C------HHHHHHHHHHHHHHHHHHhCCCCCCCeeCCCHHHHHHHHHHH
Confidence 00 00 1 245688888999999999999998753 345777899999
Q ss_pred HHHHhCCCceeecccEEEecc-----------------------CC----------------------------------
Q 007251 340 DELSKQGLVEESQGARVIFIE-----------------------GV---------------------------------- 362 (611)
Q Consensus 340 ~~L~~~G~~~e~dGa~~~~~~-----------------------g~---------------------------------- 362 (611)
.+|.++|++|+.+..+++... |+
T Consensus 109 ~~L~~kG~iY~~~~~v~y~~~~~tfl~d~~v~gtcP~c~~~~~~Gd~c~~~G~~l~~~~l~~p~~~r~g~~v~~~~~~qw 188 (722)
T 1rqg_A 109 LKAYENGHLVKKVTKQAYCEHDKMFLPDRFVIGTCPYCGAEDQKGDQCEVCGRPLTPEILINPRCAICGRPISFRDSAHY 188 (722)
T ss_dssp HHHHHTTCEEEEEEEEEEBTTTTBCCCGGGCCSBCSSSCCSCCCTTTCSSSCCCCCTTSSBSCBCTTTCCBCEEEEEEEE
T ss_pred HHHHHCCCEEecceeeeecCCCCcCcchhhcccccCccCCccCCcchhhhcccccChhhccCCcccCCCcEeEEEEeccE
Confidence 999999999986655444321 00
Q ss_pred -----------------------------------CCCeEEEc--------------cCCcccccCcc--hhHHH----h
Q 007251 363 -----------------------------------NIPLIIVK--------------SDGGFNYASTD--LAALW----Y 387 (611)
Q Consensus 363 -----------------------------------~~d~Vl~k--------------sDG~~tY~t~D--iA~~~----~ 387 (611)
..|.-+-| .+|...|..-| +.|.. |
T Consensus 189 F~~l~~~~~~l~~~~~~~~wp~~~~~~~~~wl~~gl~dw~ISR~~~WG~piP~~~~g~~~~~iyvW~da~i~y~~~~~~~ 268 (722)
T 1rqg_A 189 YIKMQDFAERLKRWIEKQPWKPNVKNMVLSWIEEGLEERAITRDLNWGIPVPLDEEDMKGKVLYVWFEAPIGYISITIEH 268 (722)
T ss_dssp EECGGGTHHHHHHHHHSSCCCHHHHHHHHHHHTTCCCCEECEECCSSSCBCSCCCSSSTTCEECHHHHGGGHHHHHHHHH
T ss_pred EEEhHHHHHHHHHHHHhCCCCHHHHHHHHHHHHCCCcccceeccccCccccCccccCCCCCEEEEEeccccchhhhHHHH
Confidence 01111111 12223343333 33321 1
Q ss_pred h--------hhc-cCC-C---eEEEEEeCCccccHHHHH-HHHHHcC----------CCCCCCCCCCcEEEEeeeeEEcC
Q 007251 388 R--------LNE-EKA-E---WIIYVTDVGQQLHFDMVF-SAAKRAG----------WLSADDSTYPKASHVGFGLVLGE 443 (611)
Q Consensus 388 r--------~~~-~~~-d---~iIyV~g~dq~~hf~~l~-~~~~~lG----------~~~~~~~~~~~~~Hv~~g~V~~~ 443 (611)
. +.. |+. | ..+++.|.|+..++...+ +.+.++| + +++..+.|. |+|+.
T Consensus 269 ~~~~g~~~~~~~~w~~pd~~~~~~h~~GkDii~fH~~~wpA~l~~~~~~l~~d~~rg~-----~~Pk~v~~h--G~v~~- 340 (722)
T 1rqg_A 269 FKRIGKPNEWKKYWLNIDGQTRVIHFIGKDNIPFHAIFWPAFLMAYGKYKDEEVEAEW-----NLPYDIPAN--EYLTL- 340 (722)
T ss_dssp HHHTTCTTTTHHHHBCSSCCEEEEEEEEGGGHHHHHTHHHHHHHTTCCBCSSSCCBCB-----CCCSBCCEE--CCEEE-
T ss_pred HhhcCCchHHHhccCCCCCCCeeEEEccccccccchhhhHHHHhccCCCcccccccCC-----CCCCEEEEe--eeEEe-
Confidence 1 111 221 2 457888998765433333 3445554 3 233456655 77876
Q ss_pred CCceeeeccCCcccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhcCcchhhhhhccC-CCCCcccccccccccc
Q 007251 444 DGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKN-NRLTNYTFSFDQMLND 522 (611)
Q Consensus 444 dG~kmSkR~G~~v~l~dLldea~~~a~~~~~~r~~~~~~~~~e~~~~a~~vg~~avRy~~L~~-~~~~~~~Fd~d~~~~~ 522 (611)
+|+|||||+||+|++.|++++ +|+|++|||+++. ...+|++|+++.+.+.
T Consensus 341 ~G~KMSKS~GNvV~p~d~i~~-----------------------------ygaDalR~~ll~~~~~~~D~~fs~~~~~~~ 391 (722)
T 1rqg_A 341 EGKKFSTSRNWAIWVHEFLDV-----------------------------FPADYLRYYLTTIMPETRDSDFSFSDFKVR 391 (722)
T ss_dssp TTEECBTTTTBSCBHHHHTTT-----------------------------SCHHHHHHHHHHTCCSSSCEEECHHHHHHH
T ss_pred CCeeeeeeCCCcCCHHHHHHh-----------------------------cCchHHHHHHHhcCCCCCCCccCHHHHHHH
Confidence 899999999999999999997 7999999999998 6789999999988663
Q ss_pred -c----CChHHHHHHHHHHHHHHHHHhCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Q 007251 523 -K----GNTAVYLLYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNL 597 (611)
Q Consensus 523 -~----gnt~~ylqYa~aRi~SIlrKa~~~~~~~~~~~~~~l~~~~e~~L~~~l~~fp~~v~~a~~~~~P~~l~~yL~~L 597 (611)
+ ++.++++ +|+.+++++...+. ++. ...+ .+.+++|+..+..+++.+.+++++++++.++.++++|
T Consensus 392 ~n~~l~~~l~N~~----~R~~~~~~k~~~~~--~~~--~~~~-~~~d~~ll~~l~~~~~~v~~~~e~~~f~~A~~~i~~~ 462 (722)
T 1rqg_A 392 INEELVNNLGNFV----HRALTFVNRYFDGV--VPE--RGEL-DELDREALEEIEKAFKEVGELIMNYRFKDALKRVMSL 462 (722)
T ss_dssp HHHTTTTTHHHHH----HHHHHHHHHHSTTB--CCC--CCCC-CHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHhcCCC--CCC--cccC-CHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 2 2344444 79999998864321 111 1112 4678889999999999999999999999999999999
Q ss_pred HHHHhchhhcc
Q 007251 598 SEYFTRFYSNC 608 (611)
Q Consensus 598 a~~fn~fY~~~ 608 (611)
+...|.|++.+
T Consensus 463 ~~~~n~Yi~~~ 473 (722)
T 1rqg_A 463 ASFGNRYFDHK 473 (722)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhc
Confidence 99999998754
No 15
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=99.97 E-value=2.1e-29 Score=275.90 Aligned_cols=327 Identities=16% Similarity=0.138 Sum_probs=207.7
Q ss_pred eEEEEecCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCccccchHHHHHH
Q 007251 185 KAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQE 264 (611)
Q Consensus 185 kV~Ve~~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~ 264 (611)
+|-+..|+|+|+|++||||+|++|++|+|+|+|+..||+|..+.+|+|+|+|.|.- ++ ++++|..
T Consensus 42 ~v~~YvcgPTvYg~~HIGHar~~v~~Dvl~R~lr~~Gy~V~~v~niTDvGhltG~~----------De--hddKI~~--- 106 (501)
T 3sp1_A 42 NVKVYACGPTVYNYAHIGNFRTYIFGDLLIKTLRFLGYKVNYAMNITDIGHLTGDL----------DD--GEDKVAK--- 106 (501)
T ss_dssp CEEEEECCCBCSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEBCSCCC----------------------------
T ss_pred cceEEeCCCcCCCCcchhhhHHHHHHHHHHHHHHHcCCceeEEeeecccccccCCC----------CC--CCcHHHH---
Confidence 79999999999999999999999999999999999999999999999999987621 11 3444431
Q ss_pred HHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHhcCCeeeec--ccccccCcHHHHHHHH
Q 007251 265 FYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEK--GESFYNPYIPGVIDEL 342 (611)
Q Consensus 265 ~y~~~~~~~~~d~~~~~~a~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~LgV~f~~~--~Es~y~~~v~~vi~~L 342 (611)
++.+ +|. .|+++++.+.+.|++++++|||.++++ ..+.|.+.+.+++++|
T Consensus 107 ---~A~~--------------------~g~-----~~~e~a~~~~~~f~~d~~~Lgi~~d~~~~~~t~hi~~v~~~i~~L 158 (501)
T 3sp1_A 107 ---TARE--------------------KGL-----TVYEISEFFTEAFFNDCRKLNIVYPDKVLVASKHIPIMIEVVKIL 158 (501)
T ss_dssp -----------------------------C-----CHHHHHHHHHHHHHHHHHHTTCCCCSEEEEGGGCHHHHHHHHHHH
T ss_pred ---HHHH--------------------cCC-----CHHHHHHHHHHHHHHHHHHcCCCCCCcccCcchHHHHHHHHHHHH
Confidence 1111 111 256788999999999999999998543 3578888999999999
Q ss_pred HhCCCceeecccEEEecc-----C------------------------CCCCeEEEcc-----CCcccccCc--------
Q 007251 343 SKQGLVEESQGARVIFIE-----G------------------------VNIPLIIVKS-----DGGFNYAST-------- 380 (611)
Q Consensus 343 ~~~G~~~e~dGa~~~~~~-----g------------------------~~~d~Vl~ks-----DG~~tY~t~-------- 380 (611)
.++|++|+.+|.+||+++ | +..|++|+|. .|.+.+.++
T Consensus 159 ~~kG~aY~~~g~Vyf~v~~f~~yG~ls~~~~~~~~~~g~r~~~~~~K~~p~Df~lWk~~p~~~~~~~~W~spwG~GrPGW 238 (501)
T 3sp1_A 159 EEKKITYFSNGNVYFDTSCFKSYGEMAGIDLIDKDMTLPRVDVDKFKRNKTDFVLWFTNSKFKDQEMKWDSPWGFGYPSW 238 (501)
T ss_dssp HHTTCEEEETTEEEECGGGCTTTTTTTC-----------------CCSSTTCEEEEEECCC-----CCBCCTTCSEEECH
T ss_pred HHCCCEEEeCCcEEecCCccCCccccCCCChhhhhccCCccCcccccCCchhhHhcCCCCCCCCCCceecCCCCCCCCCc
Confidence 999999999999999763 1 1136778776 355555443
Q ss_pred --chhHHHhhhhccCCCeEEEEEeCCccc-cHHHHHHHHHHcCCCCCCCCCCCcEEEEeeeeEEcCCCceeeeccCCccc
Q 007251 381 --DLAALWYRLNEEKAEWIIYVTDVGQQL-HFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVR 457 (611)
Q Consensus 381 --DiA~~~~r~~~~~~d~iIyV~g~dq~~-hf~~l~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~dG~kmSkR~G~~v~ 457 (611)
.+++...++ ++...-|++.|.|+.- |.....+.++++.-. +++..|.|. |+|+ .+|+|||||.||+|+
T Consensus 239 hiEcsam~~~~--lg~~~DIH~gG~DLifpHheneiAqs~a~~g~----~~~~~w~H~--g~v~-~~G~KMSKSlGN~it 309 (501)
T 3sp1_A 239 HLECAAMNLEY--FKDALDIHLGGVDHIGVHHINEIAIAECFLNK----KWCDVFVHG--EFLI-MDYNKMSKSRGNFIT 309 (501)
T ss_dssp HHHHHHHHHHH--TTTCCCEEEEEGGGTTTHHHHHHHHHHHHHTS----CCCSEEEEE--CCEE-CC----------CCC
T ss_pred hHHHHHHHHHH--cCCCceEEeeccccccchHHHHHHHHHHccCC----CCCeEEEEe--eeEe-eCCeEccccCCCcCC
Confidence 122222232 3432225666666533 444333444444222 567889998 6676 589999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhcCcchhhhhhccCCCCCcccccccccccccCChHHHHHHHHHHH
Q 007251 458 LVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHARI 537 (611)
Q Consensus 458 l~dLldea~~~a~~~~~~r~~~~~~~~~e~~~~a~~vg~~avRy~~L~~~~~~~~~Fd~d~~~~~~gnt~~ylqYa~aRi 537 (611)
+.|++++. +|++++|||+|+.++.++++|+++.+.+... .+-+.+.|+
T Consensus 310 ~~dll~~g----------------------------yg~d~lR~~lls~~yr~~l~fs~~~l~~a~~----~~~~ll~rl 357 (501)
T 3sp1_A 310 VKDLEDQN----------------------------FSPLDFRYLCLTSHYRNQLKFSLDNLQASKI----ARENLINKL 357 (501)
T ss_dssp HHHHHHTT----------------------------CCHHHHHHHHHTSCTTSCEECCHHHHHHHHH----HHHHHHHHH
T ss_pred HHHHHhcC----------------------------CCHHHHHHHHHhccCCCCCccCHHHHHHHHH----hhHHHHHHH
Confidence 99999973 6999999999999999999999998764321 111224566
Q ss_pred HHHHHHhCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHh
Q 007251 538 CSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALT-NLLPNVVCEYLYNLSEYFT 602 (611)
Q Consensus 538 ~SIlrKa~~~~~~~~~~~~~~l~~~~e~~L~~~l~~fp~~v~~a~~-~~~P~~l~~yL~~La~~fn 602 (611)
...+++.............. ..+ ...+..+.+.+.+|++ ++.-..+...|+++++..|
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~--~~~-----~~~~~~~~~~f~~am~dDlnt~~al~~l~~~~~~~~ 416 (501)
T 3sp1_A 358 SYFYESLDPVDLNTLNKDLK--NFG-----FSVEKEYYDSFVEKISFDLNVAQGLALLWEIIKSDN 416 (501)
T ss_dssp HHHHHTCCHHHHHHHHSCTT--SCS-----SHHHHHHHHHHHHHHHBTSCHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHhhhccccccccc--chh-----hhhHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHhc
Confidence 66665432100000000000 000 1123445566667766 6777777788888877553
No 16
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=99.95 E-value=1.2e-26 Score=259.81 Aligned_cols=328 Identities=16% Similarity=0.138 Sum_probs=221.2
Q ss_pred CCceEEEEecCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCccccchHHH
Q 007251 182 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 261 (611)
Q Consensus 182 ~~~kV~Ve~~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~ 261 (611)
+.|+..|.-.=|+|||++||||+|+.++.|+++|.++..||+|..+.-++|+|..+-.-
T Consensus 7 ~~k~f~Ittp~pY~nG~lHiGHa~~~~~~Dii~Ry~r~~G~~v~~v~G~D~hG~~ie~~--------------------- 65 (542)
T 3u1f_A 7 VEKVFFVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEA--------------------- 65 (542)
T ss_dssp CCCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEECCSHHHHHH---------------------
T ss_pred CCCCEEEeCCCCCCCCchhhHHHHHHHHHHHHHHHHHhcCCCccccCccCcChHHHHHH---------------------
Confidence 45677888888999999999999999999999999999999999998888888643211
Q ss_pred HHHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeccc---ccccCcHHHH
Q 007251 262 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE---SFYNPYIPGV 338 (611)
Q Consensus 262 l~~~y~~~~~~~~~d~~~~~~a~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~LgV~f~~~~E---s~y~~~v~~v 338 (611)
+.+. .. ++ +++++.+.+.|++++++|||.+||+.. ..|...++++
T Consensus 66 -------a~k~-g~------------------~~------~e~~~~~~~~~~~~~~~lgi~~D~~~~T~~~~~~~~v~~~ 113 (542)
T 3u1f_A 66 -------AKQK-QV------------------SP------YDFTTAVAGEFKKCFEQMDYSIDYFIRTTNEQHKAVVKEL 113 (542)
T ss_dssp -------HHHT-TS------------------CH------HHHHHHHHHHHHHHHHHHTCCCSEEEETTCHHHHHHHHHH
T ss_pred -------HHHc-CC------------------CH------HHHHHHHHHHHHHHHHHhCCccCcCccCCCHHHHHHHHHH
Confidence 1110 01 11 346777788899999999999988654 3566789999
Q ss_pred HHHHHhCCCceeecccEEEecc-----------------CCC-------CCeEEEcc-----------------------
Q 007251 339 IDELSKQGLVEESQGARVIFIE-----------------GVN-------IPLIIVKS----------------------- 371 (611)
Q Consensus 339 i~~L~~~G~~~e~dGa~~~~~~-----------------g~~-------~d~Vl~ks----------------------- 371 (611)
+.+|.++|++|+..+.+++... |+. ...|..++
T Consensus 114 f~~L~~~G~iy~~~~~v~~~~~~~~~l~d~~v~~~~~~~g~~~~~~~~sg~~ve~~~~~~~f~~l~~~~~~l~~~~~~~~ 193 (542)
T 3u1f_A 114 WTKLEQKGDIYLGRYEGWYSISDESFLTPQNITDGVDKDGNPCKVSLESGHVVTWVSEENYMFRLSAFRERLLEWYHANP 193 (542)
T ss_dssp HHHHHHTTCEEEEEEEEEEETTTTEEECGGGEEEEECTTSCEEEEETTTCCBEEEEEEEEEEECGGGGHHHHHHHHHHCT
T ss_pred HHHHhhcCcEEecceeEEeeccCcccchhhhhhccccccCccccccCCCCCcceeeccccceecchhHHHHHHHHHhhcc
Confidence 9999999999987655544321 100 00010000
Q ss_pred ---------------------C-------------Ccc--------cccCcc--hhHHH---h----------------h
Q 007251 372 ---------------------D-------------GGF--------NYASTD--LAALW---Y----------------R 388 (611)
Q Consensus 372 ---------------------D-------------G~~--------tY~t~D--iA~~~---~----------------r 388 (611)
| |.+ .|..-| ++|.. + .
T Consensus 194 ~~~~P~~~~~~~~~~~~~~l~Dw~ISRq~~~~~~WGipiP~~~~~~~~vw~da~~~~~~~~~~~~~~~g~~~~~~d~~~~ 273 (542)
T 3u1f_A 194 GCIVPEFRRREVIRAVEKGLPDLSVSRARATLHNWAIPVPGNPDHXVYVWLDALTNYLTGSRLRVDESGKEVSLVDDFNE 273 (542)
T ss_dssp TSEESHHHHHHHHHHHHHCCCCEECEEEGGGGTTCSCEETTEEEEEECHHHHHHTHHHHHHTEEECTTSCEEEECSSGGG
T ss_pred cccCCchhhHhHhhhhhccccccCccccccCcCCCCCccCCCcCeeeeeeeccchhhhhhhhccccccCCcccccchhhh
Confidence 0 000 000000 00000 0 0
Q ss_pred hhccCCCeEEEEEeCCccccHHHHH-HHHHHcCCCCCCCCCCCcEEEEeeeeEEcCCCceeeeccCCcccHHHHHHHHHH
Q 007251 389 LNEEKAEWIIYVTDVGQQLHFDMVF-SAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKN 467 (611)
Q Consensus 389 ~~~~~~d~iIyV~g~dq~~hf~~l~-~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~dG~kmSkR~G~~v~l~dLldea~~ 467 (611)
...+.+ .+++.|.|+..++...+ +.+.++|+. +...+.|. |+|. .+|+|||||+||+|++.|++++
T Consensus 274 ~~~~p~--d~~~~G~D~~~fh~~~~~a~l~~~g~~-----~~~~v~~h--g~l~-~~G~KMSKSlGNvi~p~~~i~~--- 340 (542)
T 3u1f_A 274 LERFPA--DVHVIGKDILKFHAIYWPAFLLSAGLP-----LPKKIVAH--GWWT-KDRKKISKSLGNVFDPVEKAEE--- 340 (542)
T ss_dssp TTCCSC--SEEEEEGGGHHHHHTHHHHHHHHHTCC-----CCSCEEEE--CCCE-ETTBCCBTTTTBCCCHHHHHHH---
T ss_pred hcCCcc--eEEEecccccccccchhHHHHHhhccc-----ccceeccc--ccee-cCCceeccccCCCCChhHHHhh---
Confidence 000111 36778888754322222 334566874 34555555 6665 5799999999999999999998
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHhhcCcchhhhhhccC-CCCCcccccccccccc-cCChHHHHHHHHHHHHHHHHHhC
Q 007251 468 RSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKN-NRLTNYTFSFDQMLND-KGNTAVYLLYAHARICSIIRKSG 545 (611)
Q Consensus 468 ~a~~~~~~r~~~~~~~~~e~~~~a~~vg~~avRy~~L~~-~~~~~~~Fd~d~~~~~-~gnt~~ylqYa~aRi~SIlrKa~ 545 (611)
+|+|++|||+++. ...+|++|+++.+.+. +++..+-+.+...|+.+...+..
T Consensus 341 --------------------------ygaD~lR~~l~~~~~~~~d~~fs~~~~~~~~n~~l~n~l~N~~~r~~~~~~~~~ 394 (542)
T 3u1f_A 341 --------------------------FGYDALKYFLLRESGFSDDGDYSDKNMIARLNGELADTLGNLVMRCTSAKINVN 394 (542)
T ss_dssp --------------------------HCHHHHHHHHHHHCCTTSCCEECHHHHHHHHHHTTTTTHHHHHHHHHCTTTSTT
T ss_pred --------------------------cCchHHHHHHHhcCcccccccccHHHHHHHhhhHHHHHHHHHHHHHHHhhhccc
Confidence 6999999999985 5689999999988653 32222223333456655433221
Q ss_pred CChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhchhhc
Q 007251 546 KDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSN 607 (611)
Q Consensus 546 ~~~~~~~~~~~~~l~~~~e~~L~~~l~~fp~~v~~a~~~~~P~~l~~yL~~La~~fn~fY~~ 607 (611)
.. .+ .... ..+.+++++..+....+.+.+++++++.+.+++.+++++...|.|++.
T Consensus 395 ~~---~~--~~~~-~~~~d~~il~~l~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~n~Y~~~ 450 (542)
T 3u1f_A 395 GE---WP--SPAA-YTEEDESLIQLIKDLPGTADHYYLIPDIQKAIIAVFDVLRAINAYVTD 450 (542)
T ss_dssp SB---CC--CCCC-CCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CC---CC--ccch-hhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11 11 1112 256778899999999999999999999999999999999999999864
No 17
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=99.93 E-value=1.7e-24 Score=253.08 Aligned_cols=136 Identities=12% Similarity=0.142 Sum_probs=106.8
Q ss_pred CCCcEEEEeeeeEEcCCCceeeeccCCcccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhcCcchhhhhhc-cC
Q 007251 428 TYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDL-KN 506 (611)
Q Consensus 428 ~~~~~~Hv~~g~V~~~dG~kmSkR~G~~v~l~dLldea~~~a~~~~~~r~~~~~~~~~e~~~~a~~vg~~avRy~~L-~~ 506 (611)
++..+.|. |+|+. +|+|||||+||+|++.|++++ +|+|++||++| +.
T Consensus 634 ~pk~v~~~--G~v~~-~G~KMSKS~GNvv~p~dli~~-----------------------------yGaDalR~~ll~~~ 681 (810)
T 1wkb_A 634 WPKGIAVN--GFGTL-EGQKMSKSKGNVLNFIDAIEE-----------------------------NGADVVRLYIMSLA 681 (810)
T ss_dssp SCCEEEEE--CCEEE-TTBCCCTTTTCCCBHHHHHHH-----------------------------HCHHHHHHHHHHHC
T ss_pred cccEEEEE--eEEEe-CCeehhhcCCCcCCHHHHHHH-----------------------------cChHHHHHHHHhcC
Confidence 34566666 77875 799999999999999999998 69999999998 56
Q ss_pred CCCCcccccccccccccCChHHHHHHHHHHHHHHHHHhCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007251 507 NRLTNYTFSFDQMLNDKGNTAVYLLYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLL 586 (611)
Q Consensus 507 ~~~~~~~Fd~d~~~~~~gnt~~ylqYa~aRi~SIlrKa~~~~~~~~~~~~~~l~~~~e~~L~~~l~~fp~~v~~a~~~~~ 586 (611)
.+.+|++|+++.+... + ..+.|+.+++++...... + . .....+.+++|+..+..+.+.+.+++++++
T Consensus 682 ~~~~d~~fs~~~~~~~----~----~~l~rl~n~~~~~~~~~~--~--~-~~~~~~~d~~ll~~l~~~~~~v~~~~~~~~ 748 (810)
T 1wkb_A 682 EHDSDFDWRRKEVGKL----R----KQIERFYELISQFAEYEV--K--G-NVELKDIDRWMLHRLNKAIKETTNALEEFR 748 (810)
T ss_dssp CTTCCEEECHHHHHHH----H----HHHHHHHHHHHHHHTCCC--C--S-CCCCCHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCcccCHHHHHHH----H----HHHHHHHHHHHHHHhccC--c--c-cccCCHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 7889999999876432 2 234799998887632110 0 0 111256788899999999999999999999
Q ss_pred hHHHHHHH-HHHHHHHhchhhcc
Q 007251 587 PNVVCEYL-YNLSEYFTRFYSNC 608 (611)
Q Consensus 587 P~~l~~yL-~~La~~fn~fY~~~ 608 (611)
++.++..+ +.++..+|.|.+.+
T Consensus 749 ~~~a~~~~~~~l~~~~n~yi~~~ 771 (810)
T 1wkb_A 749 TRTAVQWAFYSIMNDLRWYLRRT 771 (810)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999865 69999999887754
No 18
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=99.92 E-value=3.5e-25 Score=243.17 Aligned_cols=282 Identities=15% Similarity=0.114 Sum_probs=175.8
Q ss_pred CceEEEEecCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCeEEE------EeccCCchhHHHHHHHHHHhhC---CCCC-
Q 007251 183 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLR------RNHVGDWGTQFGMLIEYLFEKF---PNSE- 252 (611)
Q Consensus 183 ~~kV~Ve~~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~V~r------~~yinD~G~Q~~~l~~~~~~~~---~~~~- 252 (611)
-..|++++++|||||+|||||+|++++++.+||. ..|.-|.| .+++++++.||-.-..++...+ |+.+
T Consensus 10 ~~~vv~~RfaPsPTG~LHiG~aRtAl~n~~~Ar~--~~G~~iLRieDtD~~r~~~~~~~~I~~~l~wlGl~~de~p~~gg 87 (481)
T 2o5r_A 10 HHHMVRVRFAPSPTGFLHVGGARTALFNFLFARK--EKGKFILRIEDTDLERSEREYEEKLMESLRWLGLLWDEGPDVGG 87 (481)
T ss_dssp ---CCEEEECCCCCSCCBHHHHHHHHHHHHHHHH--HTCEEEECBCCSSCCSGGGHHHHHHHHHHHHHTCCCSBBTTTBC
T ss_pred cceEEEEEECCCCCCCcCHHHHHHHHHHHHHHHH--cCCeEEEEEecCCccccHHHHHHHHHHHHHHcCCCCCCCcccCC
Confidence 3468999999999999999999999999999999 45665555 4677777777754444442222 2111
Q ss_pred ----ccccchHHH---HH-HHHHHHhccc---CCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 007251 253 ----DANETAIGE---LQ-EFYRRSKNRF---DSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRV 321 (611)
Q Consensus 253 ----~~~~~~i~~---l~-~~y~~~~~~~---~~d~~~~~~a~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~LgV 321 (611)
+++.+.+.. ++ ++..+ +..+ -..++ ++.+++....+|+
T Consensus 88 ~~g~y~QS~r~~~y~~~a~~L~~~-G~aY~c~ct~ee------------------------------l~~~r~~~~~~g~ 136 (481)
T 2o5r_A 88 DHGPYRQSERVEIYREHAERLVKE-GKAYYVYAYPEE------------------------------IEEMREKLLSEGK 136 (481)
T ss_dssp TTCCCBGGGGHHHHHHHHHHHHHT-TSEEEECCCSTT------------------------------THHHHHHHHHTTC
T ss_pred CCCceeeeccHHHHHHHHHHHHHC-CCeeEecCCHHH------------------------------HHHHHHHHHhcCC
Confidence 112222221 11 11111 1111 11111 2233344556777
Q ss_pred --eee-eccc-ccccCcHHHHHHHHHhCC-------------Ccee--ecccEEEeccCCCCCeEEEccCCcccc-cCcc
Q 007251 322 --DLE-EKGE-SFYNPYIPGVIDELSKQG-------------LVEE--SQGARVIFIEGVNIPLIIVKSDGGFNY-ASTD 381 (611)
Q Consensus 322 --~f~-~~~E-s~y~~~v~~vi~~L~~~G-------------~~~e--~dGa~~~~~~g~~~d~Vl~ksDG~~tY-~t~D 381 (611)
.++ ++++ +.. .++..+.+ +.| +.++ ..|++|+..+. -.|+||+|+||.||| ++.+
T Consensus 137 ~~~yd~~~s~r~l~---~~e~~~~~-~~G~~~~iR~k~~~~~~~~~D~~~G~~~~~~~~-~~D~Vl~RsDG~ptY~~a~v 211 (481)
T 2o5r_A 137 APHYSQEMFEKFDT---PERRREYE-EKGLRPAVFFKMPRKDYVLNDVVKGEVVFKTGA-IGDFVIMRSNGLPTYNFACV 211 (481)
T ss_dssp CCCBCGGGGTTTCC---HHHHHHHH-HTTCCCEEEECCCSSCEEEEETTTEEEEECTTS-SCBEEEECTTSCBCHHHHHH
T ss_pred CCCCCCchhhhcCC---HHHHHHHH-hcCCcceEEEEcCCCceEEEecccceeEecccc-CCCeEEEccCCCcchhhHHH
Confidence 343 2212 222 22333332 333 2233 24777776542 248999999999999 5555
Q ss_pred hhHHHhhhhccCCCeEEEEEeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEeeeeEEcCCCceeeeccCCcccHHHH
Q 007251 382 LAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDL 461 (611)
Q Consensus 382 iA~~~~r~~~~~~d~iIyV~g~dq~~hf~~l~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~dG~kmSkR~G~~v~l~dL 461 (611)
+..|. .+.+++| +|.||..|++++..+++++|+.+ +.+.|+++ +++.+|+|||||+|++ +++++
T Consensus 212 vDD~~-----~githvi--rG~D~~~~t~~q~~l~~aLG~~~------p~~~H~pl--il~~~G~KLSKR~g~~-~l~~~ 275 (481)
T 2o5r_A 212 VDDML-----MEITHVI--RGDDHLSNTLRQLALYEAFEKAP------PVFAHVST--ILGPDGKKLSKRHGAT-SVEAF 275 (481)
T ss_dssp HHHHH-----TTCSEEE--EEGGGHHHHHHHHHHHHHTTCCC------CEEEEECC--EECTTSSBCCGGGSCC-BHHHH
T ss_pred HHHHh-----CCCCeEE--EChhHHHhHHHHHHHHHHcCCCC------CeEEEEee--EECCCCCcccCcCCcc-cHHHH
Confidence 55554 4568884 99999999999999999999952 47999966 7789999999999988 89999
Q ss_pred HHHHHH-HHHHHHHHhcCCCCCCHHHHHHHHhhcC-cchhhhhhccCCCCCcccccccccccccC
Q 007251 462 LDEAKN-RSKAVLIERGKDKEWTEEELEQTAEAVG-YGAAKYFDLKNNRLTNYTFSFDQMLNDKG 524 (611)
Q Consensus 462 ldea~~-~a~~~~~~r~~~~~~~~~e~~~~a~~vg-~~avRy~~L~~~~~~~~~Fd~d~~~~~~g 524 (611)
++++.. .|+...... .+|++.... +.+. .+++++|++++.+.++..|||+++..+|+
T Consensus 276 ~~~G~~peal~~~l~~---lG~s~~~~~---e~~~~~e~i~~f~l~~~~~~~~~fd~~kl~~~n~ 334 (481)
T 2o5r_A 276 RDMGYLPEALVNYLAL---LGWSHPEGK---ELLTLEELISSFSLDRLSPNPAIFDPQKLKWMNG 334 (481)
T ss_dssp HHHTCCHHHHHHHHHT---SSBCCTTCC---CCCCHHHHHHHCCGGGBCSSCEECCHHHHHHHHH
T ss_pred HHCCCCHHHHHHHHHH---hCCCCCccc---ccCCHHHHHHhCChhhCCccCcccChHHhhhhCH
Confidence 998422 232222221 222220000 0122 26899999999999999999999999875
No 19
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=99.92 E-value=9.4e-26 Score=251.50 Aligned_cols=266 Identities=13% Similarity=0.086 Sum_probs=166.7
Q ss_pred HHHHHHHHHHHcCCCCCCccCCCceEEEEecCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCch--hHH-
Q 007251 161 WMAKNIQKMLVDGIETWAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWG--TQF- 237 (611)
Q Consensus 161 ~~~~~~~~~l~~~~~~~~~~~~~~kV~Ve~~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~G--~Q~- 237 (611)
|....+.++++.+.. ++.+++ -++|||||++||||+|+++++|+++|+|++.||+|.++++++|+| +++
T Consensus 4 W~~~~a~~~~~~~~~-------~~~yv~-~tgPsPtG~lHIGhaR~al~~D~laR~l~~~g~~v~fi~~idD~d~~rkip 75 (523)
T 1irx_A 4 WADYIADKIIRERGE-------KEKYVV-ESGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVP 75 (523)
T ss_dssp HHHHHHHHHHHHSCC-------CSEEEE-EEEECCSSCCCHHHHHHHHHHHHHHHHHHTTTCEEEEEEEECTTSBCCCCC
T ss_pred hHHHHHHHHHHhcCC-------CCeEEE-CCCCCCCCCcccCCcHHHHHHHHHHHHHHHcCCCEEEEEeeCCcchhhhhh
Confidence 455556666654321 222222 225999999999999999999999999999999999999999999 443
Q ss_pred HHHHHHHHhhCCCCCccccchHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHH
Q 007251 238 GMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYK 317 (611)
Q Consensus 238 ~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~~~~~~~d~~~~~~a~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~ 317 (611)
..+..+..+. -+.+. .+-.||+ ..|+.+++.+.+.|.++|+
T Consensus 76 ~~~~~a~~~~-------~G~~~------------------------------~~~p~p~--~~~~~~~~~~~~~~~~~l~ 116 (523)
T 1irx_A 76 RNVPQEWKDY-------LGMPI------------------------------SEVPDPW--GCHESYAEHFMRKFEEEVE 116 (523)
T ss_dssp SSSCGGGGGG-------TTSBG------------------------------GGSCCTT--SSSSSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHH-------cCCCc------------------------------ccCCcch--hhHHHHHHHHHHHHHHHHH
Confidence 0000000000 01100 0111222 1255678889999999999
Q ss_pred hcCCeeeeccccc-ccC-cHHHHHHHHHhCC----------------CceeecccEEEecc--CCCCCeEE----Ec---
Q 007251 318 RLRVDLEEKGESF-YNP-YIPGVIDELSKQG----------------LVEESQGARVIFIE--GVNIPLII----VK--- 370 (611)
Q Consensus 318 ~LgV~f~~~~Es~-y~~-~v~~vi~~L~~~G----------------~~~e~dGa~~~~~~--g~~~d~Vl----~k--- 370 (611)
+|||.+|.+.+|. |.+ .+.++++.|.++| .+|+.+ |+... +....+++ ..
T Consensus 117 ~Lgi~~D~~~~se~~~~g~~~~~i~~L~~~G~~iy~~~~~~~g~~~~~~y~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 193 (523)
T 1irx_A 117 KLGIEVDLLYASELYKRGEYSEEIRLAFEKRDKIMEILNKYREIAKQPPLPEN---WWPAMVYCPEHRREAEIIEWDGGW 193 (523)
T ss_dssp TTTCCCEEEEHHHHHHTTTTHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCCTT---CCSEEEECTTTCCEECEEEECSSS
T ss_pred HcCCCceEEechhhccchHHHHHHHHHHHchHHHHHHHHhhccccccccccCC---ceeccccchhhCCcccccccCCCC
Confidence 9999997656666 766 8999999999999 666542 44321 11111111 11
Q ss_pred ------cCCcccccC-----------cchhHHHhhhhccCCCeEEEEEeCCccc------cHHHHHHHHHHcCCCCCCCC
Q 007251 371 ------SDGGFNYAS-----------TDLAALWYRLNEEKAEWIIYVTDVGQQL------HFDMVFSAAKRAGWLSADDS 427 (611)
Q Consensus 371 ------sDG~~tY~t-----------~DiA~~~~r~~~~~~d~iIyV~g~dq~~------hf~~l~~~~~~lG~~~~~~~ 427 (611)
.+|.+.+.. .|++..++- ++..|+++|.||.. |..++. .+++|+.+
T Consensus 194 ~~~f~~~~g~~~~~d~~~G~g~~~w~~d~~~~~~~-----l~~~vd~~G~Dh~~~h~s~~~~~~i~--~~alG~~~---- 262 (523)
T 1irx_A 194 KVKYKCPEGHEGWVDIRSGNVKLRWRVDWPMRWSH-----FGVDFEPAGKDHLVAGSSYDTGKEII--KEVYGKEA---- 262 (523)
T ss_dssp CEEECCSSSCCCEECTTSSCEEECHHHHHHHHHHH-----SCCCBCCEEHHHHSTTSHHHHHHHHH--HHHHCCCC----
T ss_pred ceeeeecCCCccccCCcCCCCCCCCCcchHhhHHH-----cCCCCcCCCcCccCCCcchhhHHHHH--HHHhCCCC----
Confidence 223222111 122222221 12346688999977 444442 26889842
Q ss_pred CCCcEEEEeeeeEEcC-CCceeeeccCCcccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhcCcchhhhhhccC
Q 007251 428 TYPKASHVGFGLVLGE-DGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKN 506 (611)
Q Consensus 428 ~~~~~~Hv~~g~V~~~-dG~kmSkR~G~~v~l~dLldea~~~a~~~~~~r~~~~~~~~~e~~~~a~~vg~~avRy~~L~~ 506 (611)
+.+.|+ |+|++. +|+|||||+||+|++.|++++ ++++|+|||+++.
T Consensus 263 --p~~~h~--~~i~~~g~g~KmSKs~Gn~i~~~~~~~~-----------------------------~~pdalR~~l~~~ 309 (523)
T 1irx_A 263 --PLSLMY--EFVGIKGQKGKMSGSKGNVILLSDLYEV-----------------------------LEPGLVRFIYARH 309 (523)
T ss_dssp --CBCCEE--CCEEESCC---------CCCCHHHHHTT-----------------------------SCHHHHHHHHHSS
T ss_pred --CeEEEE--EEEEeCCCCCCCCCcCCCCCCHHHHHHH-----------------------------cCHHHHHHHHHhc
Confidence 357787 678877 799999999999999999997 7999999999998
Q ss_pred CCCCccccccc-ccc
Q 007251 507 NRLTNYTFSFD-QML 520 (611)
Q Consensus 507 ~~~~~~~Fd~d-~~~ 520 (611)
.+.++.+|+++ .+.
T Consensus 310 ~~~~~~~fs~~~~l~ 324 (523)
T 1irx_A 310 RPNKEIKIDLGLGIL 324 (523)
T ss_dssp CTTSCEEECCSTTHH
T ss_pred CCCCCceeCcchhHH
Confidence 89999999999 554
No 20
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=99.91 E-value=2.1e-24 Score=241.83 Aligned_cols=270 Identities=19% Similarity=0.189 Sum_probs=179.6
Q ss_pred CHHHHHHHHHHHHHcCCCCCCccCCCceEEEEecCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCchhHH
Q 007251 158 SKNWMAKNIQKMLVDGIETWAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQF 237 (611)
Q Consensus 158 ~~~~~~~~~~~~l~~~~~~~~~~~~~~kV~Ve~~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~G~Q~ 237 (611)
.+.|+.+.+.++++.|..+... ..++|++.|+ |||||+|||||+|++++++.+||- +.|-=+.| |.|...
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~RFa-PsPTG~LHiG~artAl~n~l~Ar~--~~G~~ilR---ieDtD~-- 173 (592)
T 3al0_C 104 GSMFITGAFFDILEVGPKKIRR--CFELVRVRFA-PSPTGHLHVGGARTALFNWMFARK--EGGKFILR---IEDTDT-- 173 (592)
T ss_dssp ----------------CCCCCC--CCCCCEEEEC-CCSSSCCBHHHHHHHHHHHHHHHH--HTCEEEEC---BCCCCS--
T ss_pred ChHHHHHHHHHHHHcChhhccc--CCCeEEEEEC-CCCCCCccHHHHHHHHHHHHHHHh--cCCcEEEE---ecCcCh--
Confidence 3567888888888877653222 2367999999 999999999999999999999984 23322222 333210
Q ss_pred HHHHHHHHhhCCCCCccccchHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHH
Q 007251 238 GMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYK 317 (611)
Q Consensus 238 ~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~~~~~~~d~~~~~~a~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~ 317 (611)
.+ . ...+.+.+.++|+
T Consensus 174 ---------------------------------~r--~-----------------------------~~~~~~~I~~dL~ 189 (592)
T 3al0_C 174 ---------------------------------ER--S-----------------------------SREYEQQILESLR 189 (592)
T ss_dssp ---------------------------------SS--C-----------------------------CHHHHHHHHHHHH
T ss_pred ---------------------------------hh--c-----------------------------cHHHHHHHHHHHH
Confidence 00 0 1223456777999
Q ss_pred hcCCeeeec----------ccccccCcHHHHHHHHHhCCCcee-----------------------ecc---cEEEecc-
Q 007251 318 RLRVDLEEK----------GESFYNPYIPGVIDELSKQGLVEE-----------------------SQG---ARVIFIE- 360 (611)
Q Consensus 318 ~LgV~f~~~----------~Es~y~~~v~~vi~~L~~~G~~~e-----------------------~dG---a~~~~~~- 360 (611)
.||+.+|.. .-|.+.+...++++.|.++|++|. .+| +++++++
T Consensus 190 wlGl~~D~~~~~gG~~gp~~qSer~~~y~~~~~~L~~~G~aY~c~ct~~el~~~~~~~Y~~~~~~~~~g~~~~iR~k~~~ 269 (592)
T 3al0_C 190 WCGLDWDEGPDIGGDFGPYRQSERLEIYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYPHEYKEKGHPVTIKFKVLP 269 (592)
T ss_dssp HTTCCCSBBTTTBCTTCCCBSTTCHHHHHHHHHHHHHTTTEEEEEEETTEEEEECCCCSSCCHHHHHTTCCEEEEECCCS
T ss_pred HcCCCCCCCCCcCCCCCCeeeeCCHHHHHHHHHHHHHcCCceEecCCHHHHHhhcCCCCCcHHHHhhcCCCceEEEECCC
Confidence 999998641 234444668899999999999996 346 6777664
Q ss_pred -----------------CCCCCeEEEccCCcccccCcchhHHHhhhhccCCCeEEEEEeCCccccHHHHHHHHHHcCCCC
Q 007251 361 -----------------GVNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLS 423 (611)
Q Consensus 361 -----------------g~~~d~Vl~ksDG~~tY~t~DiA~~~~r~~~~~~d~iIyV~g~dq~~hf~~l~~~~~~lG~~~ 423 (611)
++..|.||+|+||.|||.. |...+.. ..+.+|+| +|.||..+-++...+.+++|+.+
T Consensus 270 ~~~~~~D~v~G~~~~~~~~~~D~Vl~R~dg~ptY~~---a~vvDD~-~~githvi--rG~D~~~~t~~q~~l~~alg~~~ 343 (592)
T 3al0_C 270 GKTSFEDLLKGYMEFDNSTLEDFIIMKSNGFPTYNF---AVVVDDH-LMRISHVF--RGEDHLSNTPKQLMIYEAFGWEA 343 (592)
T ss_dssp SCCEECCTTTCSEECCSSSSCCEEEECTTSCCCHHH---HHHHHHH-HTTCSBCC--EEGGGGGGHHHHHHHHTTTTCCC
T ss_pred CCceeeecccceeeeccccCCCeEEEcCCCCeehhh---HHHHHHH-hcCCCeEE--EchhhHhCHHHHHHHHHHhCCCC
Confidence 3347899999999999984 4444544 46889985 99999999999989999999952
Q ss_pred CCCCCCCcEEEEeeeeEEcCCCceeeeccCCcccHHHHHHHHHH-HHHH-HHHHhcCCCCCCHHHHHHHHhhcCc-chhh
Q 007251 424 ADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKN-RSKA-VLIERGKDKEWTEEELEQTAEAVGY-GAAK 500 (611)
Q Consensus 424 ~~~~~~~~~~Hv~~g~V~~~dG~kmSkR~G~~v~l~dLldea~~-~a~~-~~~~r~~~~~~~~~e~~~~a~~vg~-~avR 500 (611)
+.+.|++ +|++.+|+|||||.|+ +++.++++.+.. .|+. .+.. .+|++..- +.+.. ..++
T Consensus 344 ------P~~~hlp--li~~~~g~KLSKR~g~-~~l~~~~~~G~~peal~~~l~~----lG~s~~~~----e~~s~~e~i~ 406 (592)
T 3al0_C 344 ------PVFMHIP--LILGSDRTPLSKRHGA-TSVEHFRREGILSRALMNYLAL----LGWRVEGD----EIFTIEEKLQ 406 (592)
T ss_dssp ------CBCCEEC--CCBCTTSSBCCTTTCS-SBHHHHHHTTCCHHHHHHHHTT----TTBCCCSC----SCCCTTTTGG
T ss_pred ------CeEEEee--eeeCCCCCcccccCCc-ccHHHHHHCCCCHHHHHHHHHH----hCCCCccc----ccCCHHHHHh
Confidence 5778984 5888999999999998 689999986421 2222 2221 22321000 11222 2688
Q ss_pred hhhccCCCCCcccccccccccccC
Q 007251 501 YFDLKNNRLTNYTFSFDQMLNDKG 524 (611)
Q Consensus 501 y~~L~~~~~~~~~Fd~d~~~~~~g 524 (611)
.|++..-+.++..||++++..+|+
T Consensus 407 ~f~~~~i~~~~~~fd~~kl~~~N~ 430 (592)
T 3al0_C 407 SFDPKDISNKGVIFDYQKLEWVNG 430 (592)
T ss_dssp GCCTTSBCSSCCBCCHHHHHHHHH
T ss_pred hCChhhcCcccceeCHHHHhhhhH
Confidence 999999888999999999887764
No 21
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=99.91 E-value=1.5e-23 Score=245.22 Aligned_cols=170 Identities=15% Similarity=0.190 Sum_probs=118.3
Q ss_pred EEEEeCCccc-cHHHHHHHHHHc-CCCCCCCCCCCcEEEEeeeeEEcCCCceeeeccCCcccHHHHHHHHHHHHHHHHHH
Q 007251 398 IYVTDVGQQL-HFDMVFSAAKRA-GWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIE 475 (611)
Q Consensus 398 IyV~g~dq~~-hf~~l~~~~~~l-G~~~~~~~~~~~~~Hv~~g~V~~~dG~kmSkR~G~~v~l~dLldea~~~a~~~~~~ 475 (611)
+|+.|.||.. ||..+..+..++ |.. ++...+. +|+|++.+|+|||||+||+|++.|++++
T Consensus 547 l~~~G~D~~r~w~~~~~~~~~~~~~~~----pf~~v~~---hg~vl~~~G~KMSKS~GNvV~p~dli~~----------- 608 (821)
T 1ile_A 547 FIAEGIDQTRGWFNSLHQLGVMLFGSI----AFKNVIC---HGLILDEKGQKMSKSKGNVVDPWDIIRK----------- 608 (821)
T ss_dssp BEEEEGGGGGTHHHHHHHHHHHHHSSC----SBSEEEE---ECCEECTTSSCCCTTTTCCCCHHHHHTT-----------
T ss_pred cccchhhhhccHHHHHHHHHHHhcCCC----CcceEEE---EeeEECCCCCCCCccCCCCCCHHHHHHH-----------
Confidence 6788888864 666665554443 543 2333344 4889988999999999999999999998
Q ss_pred hcCCCCCCHHHHHHHHhhcCcchhhhhhccCC-CCCcccccccccccccCChHHHHHHHHHHHHHHHHHhCCChhhhhhc
Q 007251 476 RGKDKEWTEEELEQTAEAVGYGAAKYFDLKNN-RLTNYTFSFDQMLNDKGNTAVYLLYAHARICSIIRKSGKDIEELKKT 554 (611)
Q Consensus 476 r~~~~~~~~~e~~~~a~~vg~~avRy~~L~~~-~~~~~~Fd~d~~~~~~gnt~~ylqYa~aRi~SIlrKa~~~~~~~~~~ 554 (611)
+|+|++||++++.. ..+|++||++.+.....+...-+.++..|+.......+..... ..
T Consensus 609 ------------------yGaDalR~~ll~~~~~~~d~~fs~~~l~~~~~~~~~kl~N~~~~~~~~~~~~~~~~~~--~~ 668 (821)
T 1ile_A 609 ------------------FGADALRWYIYVSAPPEADRRFGPNLVRETVRDYFLTLWNVYSFFVTYANLDRPDLKN--PP 668 (821)
T ss_dssp ------------------TCHHHHHHHHHHHSCSSSCEECCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHCCCTTS--CC
T ss_pred ------------------hCHHHHHHHHHhCCCCCCCcEecHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccc--cc
Confidence 79999999999985 7899999999876532222222333333332111111111000 00
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH-HHHhchhh
Q 007251 555 GSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLS-EYFTRFYS 606 (611)
Q Consensus 555 ~~~~l~~~~e~~L~~~l~~fp~~v~~a~~~~~P~~l~~yL~~La-~~fn~fY~ 606 (611)
....+ .+.++.|+..+..+++.+.+++++++++.++.++++++ ..++++|-
T Consensus 669 ~~~~~-~~~d~~ll~~l~~~~~~v~~a~e~~~f~~A~~~l~~f~~~~~~n~Yl 720 (821)
T 1ile_A 669 PPEKR-PEMDRWLLARMQDLIQRVTEALEAYDPTTSARALRDFVVEDLSQWYV 720 (821)
T ss_dssp CSTTS-CHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSTTTH
T ss_pred ccccC-CHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHH
Confidence 01112 56788899999999999999999999999999999999 77777763
No 22
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=99.90 E-value=1.7e-22 Score=236.16 Aligned_cols=158 Identities=16% Similarity=0.166 Sum_probs=112.6
Q ss_pred EEEeCCcc-ccHHHHHHH-HHHcCCCCCCCCCCCcEEEEeeeeEEcCCCceeeeccCCcccHHHHHHHHHHHHHHHHHHh
Q 007251 399 YVTDVGQQ-LHFDMVFSA-AKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIER 476 (611)
Q Consensus 399 yV~g~dq~-~hf~~l~~~-~~~lG~~~~~~~~~~~~~Hv~~g~V~~~dG~kmSkR~G~~v~l~dLldea~~~a~~~~~~r 476 (611)
||.|.||. .||.++... +...|.. ++...+.| |+|++.+|+|||||+||+|++.|++++
T Consensus 485 ~v~G~Dii~~W~a~~~~~~~~~~g~~----Pfk~v~~h---G~vld~~G~KMSKSlGNvIdP~dli~~------------ 545 (862)
T 1gax_A 485 LVTGYDILFLWVSRMEVSGYHFMGER----PFKTVLLH---GLVLDEKGQKMSKSKGNVIDPLEMVER------------ 545 (862)
T ss_dssp EEEEGGGTTTTHHHHHHHHHHHSSSC----SBSEEEEE---CCEECTTSCBCCTTTTCCCCHHHHHHH------------
T ss_pred EecCccccccHHHHHHHHHHHhcCCC----cccEEEEe---eeEEcCCCCCccccCCCCCCHHHHHHH------------
Confidence 44555543 245544333 3445653 23333444 889999999999999999999999998
Q ss_pred cCCCCCCHHHHHHHHhhcCcchhhhhhccC-CCCCcccccccccccccCChHHHHHHHHHHHHHHHHHhC---CChhhhh
Q 007251 477 GKDKEWTEEELEQTAEAVGYGAAKYFDLKN-NRLTNYTFSFDQMLNDKGNTAVYLLYAHARICSIIRKSG---KDIEELK 552 (611)
Q Consensus 477 ~~~~~~~~~e~~~~a~~vg~~avRy~~L~~-~~~~~~~Fd~d~~~~~~gnt~~ylqYa~aRi~SIlrKa~---~~~~~~~ 552 (611)
+|.|++||++++. .+.+|++||++.+.... | + +.|+.+..|-.. .+..+
T Consensus 546 -----------------yGaDalR~~ll~~~~~~~D~~fs~~~l~~~~-~---f----~nkl~N~~rf~~~~~~~~~~-- 598 (862)
T 1gax_A 546 -----------------YGADALRFALIYLATGGQDIRLDLRWLEMAR-N---F----ANKLYNAARFVLLSREGFQA-- 598 (862)
T ss_dssp -----------------HCHHHHHHHHHHHCCTTCCEECCHHHHHHHH-H---H----HHHHHHHHHHHHHHSSSCCC--
T ss_pred -----------------cChHHHHHHHHhcCCCCCCCccCHHHHHHHH-H---H----HHHHHHHHHHHHhcccCCCC--
Confidence 6999999999986 77899999999875532 1 2 234444443221 11000
Q ss_pred hcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH-HHHhchh
Q 007251 553 KTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLS-EYFTRFY 605 (611)
Q Consensus 553 ~~~~~~l~~~~e~~L~~~l~~fp~~v~~a~~~~~P~~l~~yL~~La-~~fn~fY 605 (611)
.... ..+.+++|+..+..+...+.+++++++++.++..+++++ ..|.+||
T Consensus 599 --~~~~-~~~~D~~il~~l~~~~~~v~~a~e~~~f~~A~~~l~~f~~~~~~n~Y 649 (862)
T 1gax_A 599 --KEDT-PTLADRFMRSRLSRGVEEITALYEALDLAQAAREVYELVWSEFCDWY 649 (862)
T ss_dssp --CBCC-CCHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTTH
T ss_pred --cccc-CCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhhHHH
Confidence 0011 256788999999999999999999999999999999999 5687777
No 23
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=99.90 E-value=6e-23 Score=241.63 Aligned_cols=164 Identities=16% Similarity=0.182 Sum_probs=123.8
Q ss_pred EEEEeCCcc-ccHHHHHHHH-HHcCCCCCCCCCCCcEEEEeeeeEEcCCCceeeeccCCcccHHHHHHHHHHHHHHHHHH
Q 007251 398 IYVTDVGQQ-LHFDMVFSAA-KRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIE 475 (611)
Q Consensus 398 IyV~g~dq~-~hf~~l~~~~-~~lG~~~~~~~~~~~~~Hv~~g~V~~~dG~kmSkR~G~~v~l~dLldea~~~a~~~~~~ 475 (611)
+|+.|.||. .||..+.... ...|.. ++...+.| |||++.+|+|||||+||+|++.|++++
T Consensus 551 l~~~G~D~~r~wf~~~l~~s~~~~g~~----Pfk~v~~h---G~V~d~~G~KMSKSlGNvV~P~dvi~~----------- 612 (917)
T 1ffy_A 551 MYLEGSDQYRGWFNSSITTSVATRGVS----PYKFLLSH---GFVMDGEGKKMSKSLGNVIVPDQVVKQ----------- 612 (917)
T ss_dssp EEEEEGGGGTTHHHHHHHHHHHHHSSC----SBSEEEEE---CCEECTTSCCCCSSSSCCCCHHHHHHH-----------
T ss_pred EEEEEecccccHHHHHHHHHHHhhCCC----cccceeEe---eeEEcCCCcCcccccCCcCChHHHHHh-----------
Confidence 789999997 4777764333 344653 23333444 889988999999999999999999998
Q ss_pred hcCCCCCCHHHHHHHHhhcCcchhhhhhccCCCCCcccccccccccccCChHHHHHHHHHHHHHHHHHhCC---Chhh-h
Q 007251 476 RGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHARICSIIRKSGK---DIEE-L 551 (611)
Q Consensus 476 r~~~~~~~~~e~~~~a~~vg~~avRy~~L~~~~~~~~~Fd~d~~~~~~gnt~~ylqYa~aRi~SIlrKa~~---~~~~-~ 551 (611)
+|.|++||++++..+.+|++|+++.+.... -++.|+.+.+|.... +... .
T Consensus 613 ------------------yGaDalR~~lls~~~~~D~~fs~~~l~~~~--------~~~~kl~n~~r~~l~nl~~~~~~~ 666 (917)
T 1ffy_A 613 ------------------KGADIARLWVSSTDYLADVRISDEILKQTS--------DDYRKIRNTLRFMLGNINDFNPDT 666 (917)
T ss_dssp ------------------TCHHHHHHHHHTSCTTSCEECCHHHHHHHH--------HHHHHHHHHHHHHHHTSTTCCHHH
T ss_pred ------------------CCHHHHHHHHhccCCCCCcccCHHHHHHHH--------HHHHHHHHHHHHHHhhhhccCccc
Confidence 799999999999888999999999875421 245677777765411 1000 0
Q ss_pred hhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH-HHhchhh
Q 007251 552 KKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSE-YFTRFYS 606 (611)
Q Consensus 552 ~~~~~~~l~~~~e~~L~~~l~~fp~~v~~a~~~~~P~~l~~yL~~La~-~fn~fY~ 606 (611)
.......+ .+.+++|+..+..+.+.+.+++++++++.++.++++++. .|++||-
T Consensus 667 ~~v~~~~l-~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~l~~~Yl 721 (917)
T 1ffy_A 667 DSIPESEL-LEVDRYLLNRLREFTASTINNYENFDYLNIYQEVQNFINVELSNFYL 721 (917)
T ss_dssp HCCCGGGS-CHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCCCCCHH
T ss_pred ccCCcccc-CHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHH
Confidence 00001112 567889999999999999999999999999999999998 7998884
No 24
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=99.88 E-value=1.6e-21 Score=228.61 Aligned_cols=123 Identities=13% Similarity=0.051 Sum_probs=98.2
Q ss_pred ceeeeccCCcccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhcCcchhhhhhcc-CCCCCcccccccccccccC
Q 007251 446 KRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLK-NNRLTNYTFSFDQMLNDKG 524 (611)
Q Consensus 446 ~kmSkR~G~~v~l~dLldea~~~a~~~~~~r~~~~~~~~~e~~~~a~~vg~~avRy~~L~-~~~~~~~~Fd~d~~~~~~g 524 (611)
+|||||+||+|++.|++++ +|.|++||++++ ..+.+|++||++.+...
T Consensus 636 ~KMSKSkGNvVdP~diI~~-----------------------------yGADalRl~ll~~~~~~~D~~fs~~~v~~~-- 684 (878)
T 2v0c_A 636 AVMSKSKGNGVMVGPFVKE-----------------------------QGADIARITILFAAPPENEMVWTEEGVQGA-- 684 (878)
T ss_dssp EECSGGGTCCCBHHHHHHH-----------------------------SCHHHHHHHHHHHSCTTSCEEECHHHHHHH--
T ss_pred HHhhccCCCcccHHHHHHH-----------------------------cCccHHHHHHhccCCCCCCceeCHHHHHHH--
Confidence 8999999999999999998 799999999998 67899999999987542
Q ss_pred ChHHHHHHHHHHHHHHHHHhCCChh-hhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhc
Q 007251 525 NTAVYLLYAHARICSIIRKSGKDIE-ELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTR 603 (611)
Q Consensus 525 nt~~ylqYa~aRi~SIlrKa~~~~~-~~~~~~~~~l~~~~e~~L~~~l~~fp~~v~~a~~~~~P~~l~~yL~~La~~fn~ 603 (611)
...+.|+.+++++...... .........+ .+.+++|+..+..+.+.+.+++++++++.++.++++++..+|+
T Consensus 685 ------~~~l~Rl~n~~~~~~~~~~~~~~~~~~~~l-~~~D~~ll~~l~~~i~~v~~~~e~~~f~~Ai~~l~~f~~~l~k 757 (878)
T 2v0c_A 685 ------WRFLNRIYRRVAEDREALLETSGVFQAEAL-EGKDRELYGKLHETLKKVTEDLEALRFNTAIAALMEFLNALYE 757 (878)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHTCCCCCCGGGC-CHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHhcccccccccCcccC-CHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhh
Confidence 2356788888876421100 0000001112 5678899999999999999999999999999999999999999
Q ss_pred hhh
Q 007251 604 FYS 606 (611)
Q Consensus 604 fY~ 606 (611)
|-+
T Consensus 758 ~~~ 760 (878)
T 2v0c_A 758 YRK 760 (878)
T ss_dssp HHH
T ss_pred hcc
Confidence 843
No 25
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=99.86 E-value=2e-20 Score=218.19 Aligned_cols=166 Identities=13% Similarity=0.236 Sum_probs=119.3
Q ss_pred EEEEeCCc-ccc--HHHHH-HHHHHcCCCCCCCCCCCcEEEEeeeeEE-------cCCCc--------------------
Q 007251 398 IYVTDVGQ-QLH--FDMVF-SAAKRAGWLSADDSTYPKASHVGFGLVL-------GEDGK-------------------- 446 (611)
Q Consensus 398 IyV~g~dq-~~h--f~~l~-~~~~~lG~~~~~~~~~~~~~Hv~~g~V~-------~~dG~-------------------- 446 (611)
+||.|.|| ..| +.+.+ +++..+|+.+.+.|+ -..+..|||+ +.+|+
T Consensus 546 ~yigG~EHailHllyaRf~~~~L~~~g~~~~~ePF---k~ll~qGmVl~~~~~~~d~~G~~~~~~~~~v~~~~~~~~~~~ 622 (880)
T 4arc_A 546 IYIGGIEHAIMHLLYFRFFHKLMRDAGMVNSDEPA---KQLLCQGMVLADAFYYVGENGERNWVSPVDAIVERDEKGRIV 622 (880)
T ss_dssp EEECCGGGTTTHHHHHHHHHHHHHHTTSCCCSCSE---EEEECCCCEEEEEEEEECTTSCEEEECSTTCEEEECTTCCEE
T ss_pred EeecchhhHHHHHHHHHHHHHHHHHhhcccCCCCh---HHeEEeceEeecceeccccCCcccccCHHHhccccccccccc
Confidence 67888888 345 35544 556778875432222 2223448885 66777
Q ss_pred ----------------eeeeccCCcccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhcCcchhhhhhccC-CCC
Q 007251 447 ----------------RLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKN-NRL 509 (611)
Q Consensus 447 ----------------kmSkR~G~~v~l~dLldea~~~a~~~~~~r~~~~~~~~~e~~~~a~~vg~~avRy~~L~~-~~~ 509 (611)
|||||+||+|++.|++++ +|.|++|||+|+. .+.
T Consensus 623 ~~~~~~G~~v~~~~~eKMSKSkGNvVdP~diIek-----------------------------YGADalRl~ll~~~~~~ 673 (880)
T 4arc_A 623 KAKDAAGHELVYTGMSKMSKSKNNGIDPQVMVER-----------------------------YGADTVRLFMMFASPAD 673 (880)
T ss_dssp EEECTTCCBCEEEEEEECCTTTTCCCCHHHHHHH-----------------------------HCHHHHHHHHHHSSCTT
T ss_pred cccccCCccccccccccccCcCCCCCCHHHHHHH-----------------------------cCchHHHHHHHhcCCCC
Confidence 999999999999999999 7999999999998 679
Q ss_pred CcccccccccccccCChHHHHHHHHHHHHHHHHHhCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-hcchH
Q 007251 510 TNYTFSFDQMLNDKGNTAVYLLYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALT-NLLPN 588 (611)
Q Consensus 510 ~~~~Fd~d~~~~~~gnt~~ylqYa~aRi~SIlrKa~~~~~~~~~~~~~~l~~~~e~~L~~~l~~fp~~v~~a~~-~~~P~ 588 (611)
++++||.+.+.... .++ .|+.++++....... ........+ .+.+++|+..+.+....+.++++ +++++
T Consensus 674 ~dl~~s~~~ie~a~----rfl----~rlwn~~~~~~~~~~-~~~~~~~~l-~~~D~~ll~~l~~~i~~V~~a~ed~~~fn 743 (880)
T 4arc_A 674 MTLEWQESGVEGAN----RFL----KRVWKLVYEHTAKGD-VAALNVDAL-TENQKALRRDVHKTIAKVTDDIGRRQTFN 743 (880)
T ss_dssp SCEECCHHHHHHHH----HHH----HHHHHHHHHHHHTCC-CCCCCSTTC-CHHHHHHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred CCcccCHHHHHHHH----HHH----HHHHHHHHHHHhccc-ccccccccC-CHHHHHHHHHHHHHHHHHHHHHHhhhchh
Confidence 99999998764321 133 566666654311000 000011122 56788899999999999999998 79999
Q ss_pred HHHHHHHHHHHHHhchh
Q 007251 589 VVCEYLYNLSEYFTRFY 605 (611)
Q Consensus 589 ~l~~yL~~La~~fn~fY 605 (611)
.++..+++|+..+|+|.
T Consensus 744 tAi~~l~efvn~l~k~~ 760 (880)
T 4arc_A 744 TAIAAIMELMNKLAKAP 760 (880)
T ss_dssp HHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 99999999999999863
No 26
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=99.84 E-value=1.6e-20 Score=206.18 Aligned_cols=246 Identities=19% Similarity=0.190 Sum_probs=173.7
Q ss_pred ceEEEEecCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCccccchHHHHH
Q 007251 184 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQ 263 (611)
Q Consensus 184 ~kV~Ve~~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~ 263 (611)
++|.+=|. |.|||+|||||+|++++--..||- +.....--|.|....
T Consensus 24 ~~v~~RFA-PsPtG~LHiG~~rtal~n~l~Ar~-----~~G~filRieDtD~~--------------------------- 70 (488)
T 3afh_A 24 ELVRVRFA-PSPTGHLHVGGARTALFNWMFARK-----EGGKFILRIEDTDTE--------------------------- 70 (488)
T ss_dssp -CCEEEEC-CCCSSSCBHHHHHHHHHHHHHHHH-----HTCEEEECBCCCCTT---------------------------
T ss_pred CCceEEEC-CCCCCCccHHHHHHHHHHHHHHHH-----cCCEEEEEEeeCCcc---------------------------
Confidence 34666554 999999999999999977777664 333444445554320
Q ss_pred HHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHhcCCeeeec----------ccccccC
Q 007251 264 EFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEK----------GESFYNP 333 (611)
Q Consensus 264 ~~y~~~~~~~~~d~~~~~~a~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~LgV~f~~~----------~Es~y~~ 333 (611)
+ . ...+.+.+.++|+.||+.+|.. .-|.+.+
T Consensus 71 --------R--~-----------------------------~~~~~~~I~~dL~wlGl~wDe~~~~gG~~gp~~QSer~~ 111 (488)
T 3afh_A 71 --------R--S-----------------------------SREYEQQILESLRWCGLDWDEGPDIGGDFGPYRQSERLE 111 (488)
T ss_dssp --------T--C-----------------------------CHHHHHHHHHHHHHTTCCCSBBTTTBCTTCCCBGGGCHH
T ss_pred --------c--c-----------------------------cHHHHHHHHHHHHHcCCCCCcCCCCCCCCCCeeeeCCHH
Confidence 0 0 1122346777999999998642 2344456
Q ss_pred cHHHHHHHHHhCCCcee-----------------------ecc---cEEEecc------------------CCCCCeEEE
Q 007251 334 YIPGVIDELSKQGLVEE-----------------------SQG---ARVIFIE------------------GVNIPLIIV 369 (611)
Q Consensus 334 ~v~~vi~~L~~~G~~~e-----------------------~dG---a~~~~~~------------------g~~~d~Vl~ 369 (611)
...++++.|.++|++|. .+| +++++++ ++..|.||+
T Consensus 112 ~y~~~~~~L~~~G~aY~c~ct~eel~~~~~~~Y~~~~~~~~~G~~~~iR~k~~~~~~~~~D~v~G~~~~~~~~~~D~Vl~ 191 (488)
T 3afh_A 112 IYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYPHEYKEKGHPVTIKFKVLPGKTSFEDLLKGYMEFDNSTLEDFIIM 191 (488)
T ss_dssp HHHHHHHHHHHTTSEEEEEECSSSTTSEEEEESSCCHHHHHTTCCEEEEECCCSSEEEEEETTTEEEEEEGGGSCCEEEE
T ss_pred HHHHHHHHHHHcCCeEecCCCHHHHHhhcCCCCCchhhHHhcCCCceEEEECCCCceeEEeccceeEeecCCCCCCeEEE
Confidence 78899999999999996 235 5666654 234689999
Q ss_pred ccCCcccccCcchhHHHhhhhccCCCeEEEEEeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEeeeeEEcCCCceee
Q 007251 370 KSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLR 449 (611)
Q Consensus 370 ksDG~~tY~t~DiA~~~~r~~~~~~d~iIyV~g~dq~~hf~~l~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~dG~kmS 449 (611)
|+||.|||. +|...+.. ..+.+|+| +|.||..+-++...+.+++|+. .+.+.|++ +|++.+|+|||
T Consensus 192 R~DG~PtY~---lA~vVDD~-~mgIThVi--RG~D~l~~tp~q~~l~~aLG~~------~P~f~H~p--li~~~~g~KLS 257 (488)
T 3afh_A 192 KSNGFPTYN---FAVVVDDH-LMRISHVF--RGEDHLSNTPKQLMIYEAFGWE------APVFMHIP--LILGSDRTPLS 257 (488)
T ss_dssp CTTSCBCHH---HHHHHHHH-HTTCSEEE--EEGGGGGGHHHHHHHHHHHTCC------CCEEEEEC--CEECTTSSBCC
T ss_pred ecCCCeehh---hHHHHHHH-hcCCCEEE--EchhhhhCHHHHHHHHHHcCCC------CCeEEEEe--eeeCCCCCccc
Confidence 999999998 45555555 46889985 9999999999998999999995 25789984 58899999999
Q ss_pred eccCCcccHHHHHHHHHH-HH-HHHHHHhcCCCCCCHHHHHHHHhhcCc-chhhhhhccCCCCCcccccccccccccC
Q 007251 450 TRFSEVVRLVDLLDEAKN-RS-KAVLIERGKDKEWTEEELEQTAEAVGY-GAAKYFDLKNNRLTNYTFSFDQMLNDKG 524 (611)
Q Consensus 450 kR~G~~v~l~dLldea~~-~a-~~~~~~r~~~~~~~~~e~~~~a~~vg~-~avRy~~L~~~~~~~~~Fd~d~~~~~~g 524 (611)
||.|+ +++.++.+.+.. .| .+.+..-| |++..- +.+.. ..++.|++..-+.++..||++++..+|+
T Consensus 258 KR~g~-~~l~~~r~~G~~peal~n~l~~lG----~s~~~~----e~~s~~e~i~~f~~~~i~~~~~~fd~~kl~~~N~ 326 (488)
T 3afh_A 258 KRHGA-TSVEHFRREGILSRALMNYLALLG----WRVEGD----EIFTIEEKLQSFDPKDISNKGVIFDYQKLEWVNG 326 (488)
T ss_dssp TTTSC-CBHHHHHHHTCCHHHHHHHHHHTT----CCCSSC----SCCCHHHHGGGCCGGGSCSSCEECCHHHHHHHHH
T ss_pred CcCCc-ccHHHHHHCCCCHHHHHHHHHHhC----CCCccc----ccCCHHHHHhhCChhhcCccccccChHHhhhccH
Confidence 99998 589999986422 22 22233222 221000 00111 2588999999889999999999887764
No 27
>3gdz_A Arginyl-tRNA synthetase; klebsiella pneumoniae subsp. pneumo 78578, structural genomics, PSI-2; HET: MSE; 2.20A {Klebsiella pneumoniae subsp}
Probab=99.84 E-value=4.5e-21 Score=169.83 Aligned_cols=101 Identities=27% Similarity=0.529 Sum_probs=86.1
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCCCccccccc-CCCCcccccchhHHHHHHhcCCCCCCCChHHHHHHHHHhCCCCCCcce
Q 007251 66 NVKRELEKVFDLALKATVPNETDVRPLIAAC-TAKFGDYQCNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPPSEMIES 144 (611)
Q Consensus 66 ~~~~~~~~~i~~a~~~~~~~~~~~~~~v~~~-~~~~GD~~~n~A~~lak~~k~~~~~~~~P~~iA~~l~~~l~~~~~i~~ 144 (611)
++++.+.+.+.+++....- ..+..+.++.| +++|||||||+||.|||.+| ++|++||++|+++|+.+++|++
T Consensus 5 ~i~~~l~~~i~~al~~~~~-~~~~~~~ve~p~~~~~GD~a~n~a~~lak~~~------~~P~~iA~~i~~~l~~~~~i~~ 77 (109)
T 3gdz_A 5 NIQALLSEKVSQALIAAGA-PADCEPQVRQSAKVQFGDYQANGVMAVAKKLG------MAPRQLAEQVLSHLDLNGIANK 77 (109)
T ss_dssp CHHHHHHHHHHHHHHHTTC-CTTCCCCEEECSSGGGCSEEECCHHHHHHHTT------SCHHHHHHHHHHHCCCTTTEEE
T ss_pred CHHHHHHHHHHHHHHHcCC-CccCCceeecCCCCCcceeecHHHHHHHHHhC------CCHHHHHHHHHHhcCcCCcEeE
Confidence 4778888888888876421 12234566766 78999999999999999999 9999999999999987788999
Q ss_pred eEEecCceeEeecCHHHHHHHHHHHHHcC
Q 007251 145 CSVAGPGFVNVVLSKNWMAKNIQKMLVDG 173 (611)
Q Consensus 145 vevagpGfIN~~l~~~~~~~~~~~~l~~~ 173 (611)
++|+|||||||+|++++|.+.+.+++.+.
T Consensus 78 vevagpGFINf~l~~~~~~~~l~~il~~~ 106 (109)
T 3gdz_A 78 VEIAGPGFINIFLDPAFLADNVNRALQSE 106 (109)
T ss_dssp EEEETTTEEEEEECHHHHHHHHHHHHTTC
T ss_pred EEEeCCCeEEEEECHHHHHHHHHHHHhcc
Confidence 99999999999999999999999998654
No 28
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=99.81 E-value=3.2e-20 Score=192.14 Aligned_cols=189 Identities=18% Similarity=0.105 Sum_probs=128.9
Q ss_pred ecCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCccccchHHHHHHHHHHH
Q 007251 190 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRS 269 (611)
Q Consensus 190 ~~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~ 269 (611)
=-.|+|||+|||||+|++++....| .+|.+...--|.|....
T Consensus 9 RFAPsPtG~LHiG~~rtal~n~l~A-----r~~~g~~ilRieDtD~~--------------------------------- 50 (298)
T 1nzj_A 9 RFAPSPSGELHFGSLIAALGSYLQA-----RARQGRWLVRIEDIDPP--------------------------------- 50 (298)
T ss_dssp EECCCTTSCCCHHHHHHHHHHHHHH-----HHTTCEEEEEECCSCGG---------------------------------
T ss_pred EECcCCCCCccHHHHHHHHHHHHHH-----HhcCCeEEEEEecCCch---------------------------------
Confidence 4579999999999999999555444 45566666666664220
Q ss_pred hcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHhcCCeeee--cccccccCcHHHHHHHHHhCCC
Q 007251 270 KNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEE--KGESFYNPYIPGVIDELSKQGL 347 (611)
Q Consensus 270 ~~~~~~d~~~~~~a~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~LgV~f~~--~~Es~y~~~v~~vi~~L~~~G~ 347 (611)
+ . ...+.+.|.++|+.|||.++. ...|.+.+...++++.|.++|+
T Consensus 51 --R--~-----------------------------~~~~~~~I~~dL~~LGl~~D~~~~~qSer~~~y~~~~~~L~~~G~ 97 (298)
T 1nzj_A 51 --R--E-----------------------------VPGAAETILRQLEHYGLHWDGDVLWQSQRHDAYREALAWLHEQGL 97 (298)
T ss_dssp --G--S-----------------------------CTTHHHHHHHHHHHTTCCCSSCCEEGGGCHHHHHHHHHHHHHTTC
T ss_pred --h--h-----------------------------HHHHHHHHHHHHHHcCCCCCCCCeeeeCCHHHHHHHHHHHHHcCC
Confidence 0 0 011235677799999999852 3346666788999999999999
Q ss_pred ceee--------------------------cccEEEecc-------------------CCCCCeEEEccCCcccccCcch
Q 007251 348 VEES--------------------------QGARVIFIE-------------------GVNIPLIIVKSDGGFNYASTDL 382 (611)
Q Consensus 348 ~~e~--------------------------dGa~~~~~~-------------------g~~~d~Vl~ksDG~~tY~t~Di 382 (611)
+|.. ..+++++++ ++..|+||+|+||.|+|. +
T Consensus 98 aY~c~ct~~~l~~~~~~Y~g~cr~~~~~g~~~~~R~r~~~~~~~f~D~~~G~~~~~~~~~~~D~VL~R~dG~PtY~---l 174 (298)
T 1nzj_A 98 SYYCTCTRARIQSIGGIYDGHCRVLHHGPDNAAVRIRQQHPVTQFTDQLRGIIHADEKLAREDFIIHRRDGLFAYN---L 174 (298)
T ss_dssp EEEECCCHHHHHHTTSSCCCTTTTTCCCSTTCEEEECCSSCCCEEEETTTEEEECCHHHHHSCCEEECTTSCBCHH---H
T ss_pred cccCcCCHHHHHHcCCCCCCccccCCcCCCCCcEEEecCCcccceehhhCcccccCcccCCCCEEEECCCCCEeee---e
Confidence 9963 136666543 123689999999999995 8
Q ss_pred hHHHhhhhccCCCeEEEEEeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEeeeeEEcCCCceeeeccCCcccHHHHH
Q 007251 383 AALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLL 462 (611)
Q Consensus 383 A~~~~r~~~~~~d~iIyV~g~dq~~hf~~l~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~dG~kmSkR~G~~v~l~dLl 462 (611)
|++.+.. ..+.+++|. |.||..+-+++..+.+++|+. .+.+.|+ ++|++.+|+|||||.|++ +++++-
T Consensus 175 a~vvdD~-~~giThvIr--G~D~l~~t~~q~~l~~alG~~------~p~~~H~--pll~~~~g~KLSKR~g~~-~v~~~~ 242 (298)
T 1nzj_A 175 AVVVDDH-FQGVTEIVR--GADLIEPTVRQISLYQLFGWK------VPDYIHL--PLALNPQGAKLSKQNHAP-ALPKGD 242 (298)
T ss_dssp HHHHHHH-HTTCCEEEE--EGGGHHHHHHHHHHHHHHTCC------CCEEEEE--CBCCC--------------CCCSSC
T ss_pred eeeeEHH-hcCCCEEEe--CccccccHHHHHHHHHHcCCC------CCeEEEe--eeeECCCCCcccccCCcc-ChhcCC
Confidence 9988877 578999885 999988888887888999995 3578899 458789999999999987 666654
Q ss_pred HH
Q 007251 463 DE 464 (611)
Q Consensus 463 de 464 (611)
++
T Consensus 243 ~~ 244 (298)
T 1nzj_A 243 PR 244 (298)
T ss_dssp CH
T ss_pred cc
Confidence 43
No 29
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=99.77 E-value=3.6e-17 Score=194.05 Aligned_cols=136 Identities=11% Similarity=0.145 Sum_probs=102.8
Q ss_pred CCCcEEEEeeeeEEcCCCceeeeccCCcccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhcCcchhhhhhc-cC
Q 007251 428 TYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDL-KN 506 (611)
Q Consensus 428 ~~~~~~Hv~~g~V~~~dG~kmSkR~G~~v~l~dLldea~~~a~~~~~~r~~~~~~~~~e~~~~a~~vg~~avRy~~L-~~ 506 (611)
++..+.|. |+|+. +|+|||||+||+|++.|++++ +|.|++||+++ +.
T Consensus 634 ~pk~v~~~--G~v~~-~G~KMSKS~GNvv~p~d~i~~-----------------------------yGaDalR~~ll~~~ 681 (967)
T 1wz2_A 634 WPKGIAVN--GFGTL-EGQKMSKSKGNVLNFIDAIEE-----------------------------NGADVVRLYIMSLA 681 (967)
T ss_dssp SCCCEEEE--CCEEE-SSSCCCTTTCCCCBHHHHHHT-----------------------------TCHHHHHHHHHHHC
T ss_pred ccceEEEe--eEEee-CCEEccccccCCCCHHHHHHH-----------------------------hChHHHHHHHHhCC
Confidence 44567766 77875 899999999999999999998 79999999997 46
Q ss_pred CCCCcccccccccccccCChHHHHHHHHHHHHHHHHHhCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007251 507 NRLTNYTFSFDQMLNDKGNTAVYLLYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLL 586 (611)
Q Consensus 507 ~~~~~~~Fd~d~~~~~~gnt~~ylqYa~aRi~SIlrKa~~~~~~~~~~~~~~l~~~~e~~L~~~l~~fp~~v~~a~~~~~ 586 (611)
.+.+|++|+.+.+... ..+ +.|+.+++++...... + ... ...+.+++++..+..+...+.+++++++
T Consensus 682 ~~~~d~~fs~~~~~~~----~~~----l~rl~n~~~~~~~~~~--~--~~~-~~~~~D~~il~~l~~~~~~v~~~~e~~~ 748 (967)
T 1wz2_A 682 EHDSDFDWRRKEVGKL----RKQ----IERFYELISQFAEYEV--K--GNV-ELKDIDRWMLHRLNKAIKETTNALEEFR 748 (967)
T ss_dssp CTTCCEEECHHHHHHH----HHH----HHHHHHHHHHHHSSCC--C--CCC-CCCHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCcccCHHHHHHH----HHH----HHHHHHHHHHHhcCCC--C--Ccc-cCCHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 7789999999876432 122 3577666665421100 0 011 1246678899999999999999999999
Q ss_pred hHHHHHHH-HHHHHHHhchhhcc
Q 007251 587 PNVVCEYL-YNLSEYFTRFYSNC 608 (611)
Q Consensus 587 P~~l~~yL-~~La~~fn~fY~~~ 608 (611)
.+.++..+ +.+...+|.|.+.+
T Consensus 749 f~~A~~~~~~~l~~~~n~Yi~~~ 771 (967)
T 1wz2_A 749 TRTAVQWAFYSIMNDLRWYLRRT 771 (967)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999865 68899998776644
No 30
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=99.74 E-value=2e-17 Score=180.82 Aligned_cols=246 Identities=17% Similarity=0.221 Sum_probs=171.3
Q ss_pred ceEEEEecCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCccccchHHHHH
Q 007251 184 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQ 263 (611)
Q Consensus 184 ~kV~Ve~~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~ 263 (611)
++|.+=|. |.|||+|||||+|++++....||- +....+--|.|...+
T Consensus 24 ~~v~~RFA-PSPTG~lHiG~~rtal~n~l~Ar~-----~~G~filRieDtD~~--------------------------- 70 (490)
T 4g6z_A 24 RPVRTRFA-PSPTGFIHLGNIRSALYPWAFARK-----MKGTFVLRIEDTDVE--------------------------- 70 (490)
T ss_dssp CCCEEEEC-CCCCSCCBHHHHHHHHHHHHHHHH-----TTCEEEEEECCCCGG---------------------------
T ss_pred CCceEEeC-CCCCCCccHHHHHHHHHHHHHHHh-----cCCeEEEEeCCCCcc---------------------------
Confidence 45777666 999999999999999987777763 334444445553210
Q ss_pred HHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHhcCCeeee--cccccccCcHHHHHHH
Q 007251 264 EFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEE--KGESFYNPYIPGVIDE 341 (611)
Q Consensus 264 ~~y~~~~~~~~~d~~~~~~a~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~LgV~f~~--~~Es~y~~~v~~vi~~ 341 (611)
+ . ...+.+.|.++|+.||+..|. +..|.+.+...+++++
T Consensus 71 --------R--~-----------------------------~~~~~~~i~~dl~wlGl~~d~~~~~qS~r~~~y~~~~~~ 111 (490)
T 4g6z_A 71 --------R--S-----------------------------SQEAVDAILEGMAWLGLDYDEGPYYQMQRMDRYREVLAQ 111 (490)
T ss_dssp --------G--C-----------------------------CHHHHHHHHHHHHHTTCCCSEEEEEGGGCHHHHHHHHHH
T ss_pred --------c--c-----------------------------cHHHHHHHHHHHHHcCCCCCCCCcccccCHHHHHHHHHH
Confidence 0 0 012334667799999999853 3356666778899999
Q ss_pred HHhCCCceee----------------cc-----------------------c-EEEec--c------------C------
Q 007251 342 LSKQGLVEES----------------QG-----------------------A-RVIFI--E------------G------ 361 (611)
Q Consensus 342 L~~~G~~~e~----------------dG-----------------------a-~~~~~--~------------g------ 361 (611)
|.++|++|.. .| . .++++ . |
T Consensus 112 Li~~G~aY~C~ct~eel~~~r~~~~~~~~~~~Y~~~cr~~~~~~~~~~~~g~~~~~R~k~~~~~~~~~~D~i~G~~~~~~ 191 (490)
T 4g6z_A 112 MQEKGLVYPCYMSTEELDALRERQRAAGEKPRYDGTWRPEPGKVLPEPPAGVAPVLRFRNPLTGTVAWDDAVKGRVEISN 191 (490)
T ss_dssp HHHTTSEEEECC-------------------CCCCTTCCCTTCCCCCCCTTCCCEEEECCCCSSEEEEEETTTEEEEEEG
T ss_pred HHHCCCEEeCCCCHHHHHHHHHHHHhcCCCCCCCcccccCChhhhhhhhcCCCceEEEecCCCCcEEEEEeeeeeeeecc
Confidence 9999998820 01 0 01111 1 1
Q ss_pred -CCCCeEEEccCCcccccCcchhHHHhhhhccCCCeEEEEEeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEeeeeE
Q 007251 362 -VNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLV 440 (611)
Q Consensus 362 -~~~d~Vl~ksDG~~tY~t~DiA~~~~r~~~~~~d~iIyV~g~dq~~hf~~l~~~~~~lG~~~~~~~~~~~~~Hv~~g~V 440 (611)
.-.|.||.|+||.|||. +|...+.. ..+.+++| .|.||...-++...+.+++||. .+.+.|++ +|
T Consensus 192 ~~~~D~Vl~R~DG~ptY~---lA~vVDD~-~mgIThVi--RG~D~l~~tprq~~l~~aLG~~------~P~f~Hlp--Li 257 (490)
T 4g6z_A 192 EELDDLVVARPDGTPMYN---FCVVVDDL-DMGITHVI--RGDDHVNNTPRQINILRALGGE------VPVYAHLP--TV 257 (490)
T ss_dssp GGCCCCEEECTTSCBCHH---HHHHHHHH-HTTCCEEE--EEGGGGGGHHHHHHHHHHTTCC------CCEEEEEC--CE
T ss_pred ccCCCeEEEeeCCCccch---hHHHHHHH-hcCCCEEE--eccccccChHHHHHHHHHcCCC------CCeEEEec--ce
Confidence 12589999999999998 67777766 47889986 7999999888888899999995 36789995 48
Q ss_pred EcCCCceeeeccCCcccHHHHHHHHHH-H-HHHHHHHhcCCCCCCHHHHHHHHhhcCc-chhhhhhccCCCCCccccccc
Q 007251 441 LGEDGKRLRTRFSEVVRLVDLLDEAKN-R-SKAVLIERGKDKEWTEEELEQTAEAVGY-GAAKYFDLKNNRLTNYTFSFD 517 (611)
Q Consensus 441 ~~~dG~kmSkR~G~~v~l~dLldea~~-~-a~~~~~~r~~~~~~~~~e~~~~a~~vg~-~avRy~~L~~~~~~~~~Fd~d 517 (611)
++.+|+|||||.|. +++.++.+++.. . ..+.+.. .+|++.+ .+.+.. +.+..|++.+-..++..||++
T Consensus 258 ~~~~g~KLSKR~g~-~sl~~~r~~G~~peal~n~l~~----lG~s~~~----~e~~s~~eli~~F~~~~~~~~~~~fd~~ 328 (490)
T 4g6z_A 258 LNEQGEKMSKRHGA-MSVMGYRDAGYLPEAVLNYLAR----LGWSHGD----AEIFTREQFVEWFDLEHLGKSPAQYDHN 328 (490)
T ss_dssp ECTTSSBCCTTTTC-CBHHHHHHTTCCHHHHHHHHHT----SSBCCTT----CCCCCHHHHHHHCCGGGBCSSCEECCHH
T ss_pred eCCCCCcccCCCCC-cCHHHHHHCCCCHHHHHHHHHH----hCCCCCC----ccccCHHHHHhhCCHhhCCCCCCccCHH
Confidence 89999999999995 789999877532 2 2333332 2232211 011222 457789999999999999999
Q ss_pred ccccccC
Q 007251 518 QMLNDKG 524 (611)
Q Consensus 518 ~~~~~~g 524 (611)
++..+|+
T Consensus 329 KL~~~N~ 335 (490)
T 4g6z_A 329 KLNWLNN 335 (490)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988774
No 31
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=99.73 E-value=2.4e-17 Score=181.23 Aligned_cols=241 Identities=19% Similarity=0.162 Sum_probs=165.9
Q ss_pred cCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCccccchHHHHHHHHHHHh
Q 007251 191 SSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSK 270 (611)
Q Consensus 191 ~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~~ 270 (611)
-.|.|||+|||||+|++++ |.|.+.+|.+..+--|.|... +
T Consensus 6 FAPSPtG~lHiG~artal~-----n~l~Ar~~~G~filRieDtD~--------------~-------------------- 46 (492)
T 2cfo_A 6 LAPSPTGNLHIGTARTAVF-----NWLYARHRGGKFILRIEDTDR--------------E-------------------- 46 (492)
T ss_dssp ECCCTTSCCBHHHHHHHHH-----HHHHHHHTTCEEEEEECCCSS--------------S--------------------
T ss_pred eCCCCCCCccHHHHHHHHH-----HHHHHHhcCCeEEEEEeeCCc--------------c--------------------
Confidence 3699999999999999998 555555677777777777632 0
Q ss_pred cccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHhcCCeeee--cccccccCcHHHHHHHHHhCCCc
Q 007251 271 NRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEE--KGESFYNPYIPGVIDELSKQGLV 348 (611)
Q Consensus 271 ~~~~~d~~~~~~a~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~LgV~f~~--~~Es~y~~~v~~vi~~L~~~G~~ 348 (611)
+ .. ..+.+.|.++|+.||+..+. +.-|.+.+...+++++|.++|++
T Consensus 47 -R--~~-----------------------------~~~~~~i~~dL~wLGl~wde~~~~QS~r~~~y~~~~~~Li~~G~A 94 (492)
T 2cfo_A 47 -R--SR-----------------------------PEYTENILEGLQWLGLTWDEGPYFQSDRLDLYRQAIQTLLDKGLA 94 (492)
T ss_dssp -S--CC-----------------------------HHHHHHHHHHHHHTTCCCSEEEEEGGGCHHHHHHHHHHHHHTTSE
T ss_pred -c--cc-----------------------------hHHHHHHHHHHHHcCCCCCCCCccccCCHHHHHHHHHHHHHCCCc
Confidence 0 00 11234566688899998742 33455556677888889888888
Q ss_pred eee-----------------------c-----------------cc-EEEe--cc------------C-------CC-CC
Q 007251 349 EES-----------------------Q-----------------GA-RVIF--IE------------G-------VN-IP 365 (611)
Q Consensus 349 ~e~-----------------------d-----------------Ga-~~~~--~~------------g-------~~-~d 365 (611)
|.. + |. .+++ ++ | .. .|
T Consensus 95 Y~c~ct~~el~~~r~~~~~~g~~~~y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~~D~v~G~~~~~~~~~~~D 174 (492)
T 2cfo_A 95 YYCYCTPEELEALRAEQKAKGQAPRYDNRHRHLTPEEQAAFEAAGRTPVIRFKIEDDRQIEWQDLVRGRVSWQGADLGGD 174 (492)
T ss_dssp EEECCCHHHHHHHHHHHHHHTCCSSCCCTTTTCCHHHHHHHHHTTCCCEEEECCCTTCEEEEEETTTEEEEEEGGGGCSS
T ss_pred eEecCCHHHHHHHHHHHHhcCCCCCCCcccccCCHHHHHHHHhCCCCceEEEEcCCCCceEEEecceeeeeecccccCCC
Confidence 830 1 21 1222 21 0 12 58
Q ss_pred eEEEccC-----CcccccCcchhHHHhhhhccCCCeEEEEEeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEeeeeE
Q 007251 366 LIIVKSD-----GGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLV 440 (611)
Q Consensus 366 ~Vl~ksD-----G~~tY~t~DiA~~~~r~~~~~~d~iIyV~g~dq~~hf~~l~~~~~~lG~~~~~~~~~~~~~Hv~~g~V 440 (611)
.||+|+| |.|+|. +|...+-. ..+.+++| .|.||..+-++...+.+++|+. .+.+.|+ ++|
T Consensus 175 ~Vl~R~d~~p~~G~PtY~---la~vvDD~-~~gIthvi--RG~D~~~~t~~q~~l~~alg~~------~P~~~H~--pli 240 (492)
T 2cfo_A 175 MVIARAAPRGEIGYPLYN---LVVVVDDI-AMGITDVI--RGEDHIGNTPKQILLYEALGAT------PPNFAHT--PLI 240 (492)
T ss_dssp EEEECSCCTTSCCCBCHH---HHHHHHHH-HTTCSEEE--EEGGGTTHHHHHHHHHHHTTCC------CCEEEEE--CCE
T ss_pred eEEEEecCCCCCCceeeh---hhhhhhhh-cCCCCeEE--EchhhhhCHHHHHHHHHHcCCC------CceEEEe--eeE
Confidence 9999999 999997 56666655 47889984 9999999888887888999994 3589999 558
Q ss_pred EcCCCceeeeccCCcccHHHHHHHHHH-HHHH-HHHHhcCCCCCCH-HHHHHHHhhcCc-chhhhhhccCCCCCcccccc
Q 007251 441 LGEDGKRLRTRFSEVVRLVDLLDEAKN-RSKA-VLIERGKDKEWTE-EELEQTAEAVGY-GAAKYFDLKNNRLTNYTFSF 516 (611)
Q Consensus 441 ~~~dG~kmSkR~G~~v~l~dLldea~~-~a~~-~~~~r~~~~~~~~-~e~~~~a~~vg~-~avRy~~L~~~~~~~~~Fd~ 516 (611)
++.+|+|||||.|++ ++.++.+.+.. .|+. .+..-| |++ .... +.+.. +.++.|++..-+.++..||+
T Consensus 241 l~~~g~KLSKr~g~~-~l~~~r~~G~~peal~~~l~~lG----~s~~~~~~---e~~~~~e~i~~f~~~~i~~~~~~~d~ 312 (492)
T 2cfo_A 241 LNSTGQKLSKRDGVT-SISDFRAMGYLAPALANYMTLLG----WSPPEGVG---ELFTLDLAAKHFSFERINKAGARFDW 312 (492)
T ss_dssp ECSSSSBCCTTSSCC-BHHHHHHTTCCHHHHHHHHHHTT----BCCCTTTC---SCCCHHHHHHHCCSTTBCSSCEECCH
T ss_pred ECCCCCEecccCCcc-cHHHHHHCCCCHHHHHHHHHHhC----CCCCCccc---cccCHHHHHhhcChhhcCccccccCH
Confidence 899999999999987 89998886422 2322 233222 221 0000 01222 34778899888888999999
Q ss_pred cccccccC
Q 007251 517 DQMLNDKG 524 (611)
Q Consensus 517 d~~~~~~g 524 (611)
+++..+|+
T Consensus 313 ~kl~~~N~ 320 (492)
T 2cfo_A 313 DKLNWLNR 320 (492)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99887764
No 32
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=99.72 E-value=7.1e-17 Score=177.32 Aligned_cols=139 Identities=16% Similarity=0.129 Sum_probs=102.7
Q ss_pred CCeEEEccCCcccccCcchhHHHhhhhccCCCeEEEEEeCCccccHHHHHHHHHHc-----CCCCCCCCCCCcEEEEeee
Q 007251 364 IPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRA-----GWLSADDSTYPKASHVGFG 438 (611)
Q Consensus 364 ~d~Vl~ksDG~~tY~t~DiA~~~~r~~~~~~d~iIyV~g~dq~~hf~~l~~~~~~l-----G~~~~~~~~~~~~~Hv~~g 438 (611)
.|.||.|+||.|||. +|...+.. ..+++++| +|.||..+-++...+.+++ |+. .+.+.|+++
T Consensus 183 ~D~Vi~R~Dg~ptY~---lA~vVDD~-~mgithvi--RG~D~~~~t~~q~~l~~aL~~~g~g~~------~P~~~h~pl- 249 (498)
T 2ja2_A 183 PDFALTRASGDPLYT---LVNPCDDA-LMKITHVL--RGEDLLPSTPRQLALHQALIRIGVAER------IPKFAHLPT- 249 (498)
T ss_dssp CCCBSBCTTSCBCHH---HHHHHHHH-HTTCCEEE--EEGGGGGGHHHHHHHHHHHHHTTSCCC------CCEEEEECC-
T ss_pred CcceeEccCCCcchh---hHHHHHhh-hcCCCEEE--EChhhhhccHHHHHHHHHHHhhcCCCC------CCeEEEeee-
Confidence 588999999999998 67666665 47899985 9999999999888888999 984 357889855
Q ss_pred eEEcCCCceeeeccCCcccHHHHHHHHHH-HH-HHHHHHhcCCCCCCHHHHHHHHhhcCc-chhhhhhccCCCCCccccc
Q 007251 439 LVLGEDGKRLRTRFSEVVRLVDLLDEAKN-RS-KAVLIERGKDKEWTEEELEQTAEAVGY-GAAKYFDLKNNRLTNYTFS 515 (611)
Q Consensus 439 ~V~~~dG~kmSkR~G~~v~l~dLldea~~-~a-~~~~~~r~~~~~~~~~e~~~~a~~vg~-~avRy~~L~~~~~~~~~Fd 515 (611)
+++.+|+|||||+|+ ++++++.+++.. .| ...+.. .+|++..-. +.+.. ..+.+|++..-+.++..||
T Consensus 250 -il~~~g~KLSKR~g~-~~l~~~r~~G~~peAl~~~l~~----lG~s~~~~~---e~~s~~eli~~f~~~~~~~~~a~fd 320 (498)
T 2ja2_A 250 -VLGEGTKKLSKRDPQ-SNLFAHRDRGFIPEGLLNYLAL----LGWSIADDH---DLFGLDEMVAAFDVADVNSSPARFD 320 (498)
T ss_dssp -EECSSSSBCCTTSGG-GBHHHHHHHTCCHHHHHHHHHT----SSCCSCSSC---CCCCHHHHHHHCCGGGCCCSCEECC
T ss_pred -eECCCCCcccccCCc-ccHHHHHhCCCCHHHHHHHHHH----hCCCCCccc---ccCCHHHHHhhCChhhcCccccccC
Confidence 888999999999997 589999986422 22 222322 122210000 00111 3588999999999999999
Q ss_pred ccccccccC
Q 007251 516 FDQMLNDKG 524 (611)
Q Consensus 516 ~d~~~~~~g 524 (611)
++++..+|+
T Consensus 321 ~~kL~~~N~ 329 (498)
T 2ja2_A 321 QKKADALNA 329 (498)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhH
Confidence 999988874
No 33
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=99.71 E-value=1e-16 Score=175.32 Aligned_cols=138 Identities=17% Similarity=0.147 Sum_probs=100.3
Q ss_pred CCeEEEccCCcccccCcchhHHHhhhhccCCCeEEEEEeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEeeeeEEcC
Q 007251 364 IPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGE 443 (611)
Q Consensus 364 ~d~Vl~ksDG~~tY~t~DiA~~~~r~~~~~~d~iIyV~g~dq~~hf~~l~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~ 443 (611)
.|.||.|+||.|||. +|...+.. ..+.+++ |+|.||..|-++...+.+++|+. .+.+.|+ .++++.
T Consensus 174 ~D~Vl~R~dg~PtY~---~a~vvDD~-~~githv--irG~D~~~~t~~q~~l~~alg~~------~p~~~h~--~li~~~ 239 (468)
T 1j09_A 174 PDVVLLKSDGYPTYH---LANVVDDH-LMGVTDV--IRAEEWLVSTPIHVLLYRAFGWE------APRFYHM--PLLRNP 239 (468)
T ss_dssp CCCEEECTTSCBCHH---HHHHHHHH-HTTCCEE--EEEGGGGGGHHHHHHHHHHHTCC------CCEEEEE--CCCBCT
T ss_pred CCeEEEecCCCeeeh---hHHHHHHH-HCCCCeE--EEChhhhhhHHHHHHHHHHcCCC------CCeEEEe--eeeeCC
Confidence 589999999999997 45555554 4688998 58999999999998999999995 2578898 558889
Q ss_pred CCceeeeccCCcccHHHHHHHHHH-HH-HHHHHHhcCCCCCCHHHHHHHHhhcCc-chhhhhhccCCCCCcccccccccc
Q 007251 444 DGKRLRTRFSEVVRLVDLLDEAKN-RS-KAVLIERGKDKEWTEEELEQTAEAVGY-GAAKYFDLKNNRLTNYTFSFDQML 520 (611)
Q Consensus 444 dG~kmSkR~G~~v~l~dLldea~~-~a-~~~~~~r~~~~~~~~~e~~~~a~~vg~-~avRy~~L~~~~~~~~~Fd~d~~~ 520 (611)
+|+|||||+|+. ++.++.+++.. .| .+.+..-| |++.+-. +.+.. ..+..|.+..-+.++..||++++.
T Consensus 240 ~g~klSKR~g~~-~l~~~~~~G~~peal~~~l~~lG----~~~~~~~---~~~~~~el~~~f~~~~~~~~~~~~d~~kl~ 311 (468)
T 1j09_A 240 DKTKISKRKSHT-SLDWYKAEGFLPEALRNYLCLMG----FSMPDGR---EIFTLEEFIQAFTWERVSLGGPVFDLEKLR 311 (468)
T ss_dssp TSCBCCTTTSCC-BHHHHHHTTCCHHHHHHHHHHHS----CCCTTCC---SCCCHHHHHHHCCGGGCCCSCCBCCHHHHH
T ss_pred CCCccccccchh-hHHHHHHCCCCHHHHHHHHHHhc----cCCcccc---cCCCHHHHHhhCChhhcCccccccChHHhh
Confidence 999999999988 89999886422 22 22233222 2110000 01222 247788998888889999999988
Q ss_pred ccc
Q 007251 521 NDK 523 (611)
Q Consensus 521 ~~~ 523 (611)
.+|
T Consensus 312 ~~N 314 (468)
T 1j09_A 312 WMN 314 (468)
T ss_dssp HHH
T ss_pred hhc
Confidence 766
No 34
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}
Probab=99.62 E-value=3.6e-15 Score=165.21 Aligned_cols=139 Identities=18% Similarity=0.244 Sum_probs=103.2
Q ss_pred CCeEEEccCCcccccCcchhHHHhhhhccCCCeEEEEEeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEeeeeEEcC
Q 007251 364 IPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGE 443 (611)
Q Consensus 364 ~d~Vl~ksDG~~tY~t~DiA~~~~r~~~~~~d~iIyV~g~dq~~hf~~l~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~ 443 (611)
.|.|+.|+||.|||. +|...+-. ..+.+++| .|.||...-++...+.+++||. .+.+.|+ .+|++.
T Consensus 204 ~D~vi~r~dg~PtY~---fA~vVDD~-~mgITHVi--RG~D~l~sTp~q~~l~~alg~~------~P~y~H~--pli~~~ 269 (512)
T 4gri_A 204 PDPVILKSDGLPTYH---LANVVDDY-LMKITHVL--RAQEWVSSGPLHVLLYKAFKWK------PPIYCHL--PMVMGN 269 (512)
T ss_dssp SSCEEECTTSCBCHH---HHHHHHHH-HTTCSEEE--EEGGGGGGHHHHHHHHHHHTCC------CCEEEEE--CCCBCT
T ss_pred CceEEEecCCccccc---ccceeccc-ccCCceec--cccccccccHHHHHHHHHcCCC------CCeEEec--chhccc
Confidence 478999999999995 78777765 46888886 9999988888777888999995 3679999 458899
Q ss_pred CCceeeeccCCcccHHHHHHHHHH--HHHHHHHHhcCCCCCCHHHHHHHHhhcCc-chhhhhhccCCCCCcccccccccc
Q 007251 444 DGKRLRTRFSEVVRLVDLLDEAKN--RSKAVLIERGKDKEWTEEELEQTAEAVGY-GAAKYFDLKNNRLTNYTFSFDQML 520 (611)
Q Consensus 444 dG~kmSkR~G~~v~l~dLldea~~--~a~~~~~~r~~~~~~~~~e~~~~a~~vg~-~avRy~~L~~~~~~~~~Fd~d~~~ 520 (611)
+|+|+|||.| ..++.++.+++.. ...+.+.--| |++.+.+ +.+.. +.+.+|++.+-..++..||++++.
T Consensus 270 ~g~kLSKR~~-~~~v~~~~~~G~lPeAl~NyLalLG----ws~~~~~---Eifs~~eli~~Fdl~~v~ks~a~fD~~KL~ 341 (512)
T 4gri_A 270 DGQKLSKRHG-STALRQFIEDGYLPEAIINYVTLLG----WSYDDKR---EFFSKNDLEQFFSIEKINKSPAIFDYHKLD 341 (512)
T ss_dssp TSSBCCTTTS-CCBHHHHHHHTCCHHHHHHHHHHSS----BCSSSSC---CCCCHHHHHHHCCGGGBCSSCCBCCHHHHH
T ss_pred cccccCcccc-cccHHHHHHcCCChHHHHHHHHHhC----CCCcccc---hhhhHHHHHHHHHhcCCCCCCccccHHHHH
Confidence 9999999999 5589999887644 3333433222 2211000 11222 357789999999999999999998
Q ss_pred cccC
Q 007251 521 NDKG 524 (611)
Q Consensus 521 ~~~g 524 (611)
.+|+
T Consensus 342 ~~N~ 345 (512)
T 4gri_A 342 FFNS 345 (512)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8874
No 35
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=99.55 E-value=4.2e-15 Score=163.93 Aligned_cols=227 Identities=15% Similarity=0.116 Sum_probs=144.6
Q ss_pred CceEEEEecCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCccccchHHHH
Q 007251 183 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 262 (611)
Q Consensus 183 ~~kV~Ve~~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l 262 (611)
+++|+. =-.|+|||+|||||+|++++-..+|| +|.+...--|.|....
T Consensus 94 ~g~v~t-RFaPsPtG~LHIGhaRtal~n~l~Ar-----~~~G~~iLRieDtD~~-------------------------- 141 (553)
T 3aii_A 94 KGEVVL-RFAPNPSGPLHIGHARAAILNHEYAR-----KYDGRLILRIEDTDPR-------------------------- 141 (553)
T ss_dssp CSCCEE-EECCCSSSSCBHHHHHHHHHHHHHHH-----HTTCEEEEEECCCCGG--------------------------
T ss_pred CCceEE-EeCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEEECcCCcc--------------------------
Confidence 345554 55799999999999999998555544 6777777777775321
Q ss_pred HHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHhcCCeeee-cccccccCcHHHHHHH
Q 007251 263 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEE-KGESFYNPYIPGVIDE 341 (611)
Q Consensus 263 ~~~y~~~~~~~~~d~~~~~~a~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~LgV~f~~-~~Es~y~~~v~~vi~~ 341 (611)
+ .. ..+.+.|.++++.||+..+. ..-|.|.+...++++.
T Consensus 142 ---------R--~~-----------------------------~e~~~~I~edL~wLGl~wd~~~~qSdr~~~y~~~~~~ 181 (553)
T 3aii_A 142 ---------R--VD-----------------------------PEAYDMIPADLEWLGVEWDETVIQSDRMETYYEYTEK 181 (553)
T ss_dssp ---------G--CC-----------------------------TTHHHHHHHHHHHHTCCCSEEEEGGGGHHHHHHHHHH
T ss_pred ---------c--cc-----------------------------HHHHHHHHHHHHHcCCCCCCCcccccCHHHHHHHHHH
Confidence 0 00 11234566789999998853 2346676778889999
Q ss_pred HHhCCCceeec-----------------------------------c---cEEEeccC-------CCCCeEEEcc-----
Q 007251 342 LSKQGLVEESQ-----------------------------------G---ARVIFIEG-------VNIPLIIVKS----- 371 (611)
Q Consensus 342 L~~~G~~~e~d-----------------------------------G---a~~~~~~g-------~~~d~Vl~ks----- 371 (611)
|.++|++|... | ..++++.. ...|.|+.|.
T Consensus 182 Li~~G~AY~c~cs~eei~~~r~~g~~~~cR~~s~ee~l~~f~~m~~G~~g~~~lR~k~d~~~~n~~~~Dfvl~R~~~~~h 261 (553)
T 3aii_A 182 LIERGGAYVCTCRPEEFRELKNRGEACHCRSLGFRENLQRWREMFEMKEGSAVVRVKTDLNHPNPAIRDWVSMRIVEAEH 261 (553)
T ss_dssp HHHTTSEEEECSCHHHHHHHHHTTCCCGGGGCCHHHHHHHHHHGGGSCTTSCEEEECCCTTCSSGGGTTCEEEEECCSCB
T ss_pred HHHcCCceeCCCCHHHHHHHhhcCCCCccccCCHHHHHHHHHHHhcCCcCceEEEEEcccccCCCCCCCcEEEEecCCCC
Confidence 99999998410 1 13333321 1246778775
Q ss_pred ----CCcccccCcchhHHHhhhhccCCCeEEEEEeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEeeeeEEcCCCce
Q 007251 372 ----DGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKR 447 (611)
Q Consensus 372 ----DG~~tY~t~DiA~~~~r~~~~~~d~iIyV~g~dq~~hf~~l~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~dG~k 447 (611)
||--.|-+=|+|...+-. ..|.+++| .|.||..+-++...+.+++|+. .+.+.|+ ++++ .+|+|
T Consensus 262 p~~Gd~~~g~PtYhfa~~vDD~-~~GIThvi--RG~D~~~nt~~Q~~l~~alG~~------~P~y~H~--~~L~-~~g~K 329 (553)
T 3aii_A 262 PRTGTRYRVYPMMNFSVAVDDH-LLGVTHVL--RGKDHLANREKQEYLYRHLGWE------PPEFIHY--GRLK-MDDVA 329 (553)
T ss_dssp TTTBTSCCEEECHHHHHHHHHH-HTTCCEEE--C-----CHHHHHHHHHHHHTCC------CCEEECC--CCBC------
T ss_pred CccCCCceeeeeeeeeeeeeec-cCCCceEe--ccHhhhhCHHHHHHHHHHcCCC------CCeEEEe--eEEe-cCCce
Confidence 210023333466655543 46888886 8999988777776777889984 2456687 5574 58999
Q ss_pred eeeccCC---------------cccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhcCcchhhhhhccCCC-CCc
Q 007251 448 LRTRFSE---------------VVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNR-LTN 511 (611)
Q Consensus 448 mSkR~G~---------------~v~l~dLldea~~~a~~~~~~r~~~~~~~~~e~~~~a~~vg~~avRy~~L~~~~-~~~ 511 (611)
||||+|+ ..++.+|++.+ +.+.|+|+|+++... .++
T Consensus 330 LSKR~~~~~v~~g~v~gWdDpr~~Ti~~lr~rG----------------------------~~PeaIr~fl~~~G~s~~~ 381 (553)
T 3aii_A 330 LSTSGAREGILRGEYSGWDDPRLGTLRAIARRG----------------------------IRPEAIRKLMVEIGVKIAD 381 (553)
T ss_dssp --CHHHHHHHHHSSCCSTTCTTSCBHHHHHHTT----------------------------CCHHHHHHHHHHHTTCSSC
T ss_pred echhhhhhhccccccccccCcchHHHHHHHHcC----------------------------CCHHHHHHHHHhcCCCCcc
Confidence 9999987 66778777763 567899999998876 588
Q ss_pred cccccccccc
Q 007251 512 YTFSFDQMLN 521 (611)
Q Consensus 512 ~~Fd~d~~~~ 521 (611)
..|||+.+.+
T Consensus 382 ~~~s~~~L~~ 391 (553)
T 3aii_A 382 STMSWKKIYG 391 (553)
T ss_dssp BCCCHHHHHH
T ss_pred ccccHHHHHH
Confidence 9999988754
No 36
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=99.44 E-value=4.5e-13 Score=147.82 Aligned_cols=212 Identities=12% Similarity=0.058 Sum_probs=137.4
Q ss_pred HHHHHHHHHHHHcCCCCCCccCCCceEEEEecCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCchhHHHH
Q 007251 160 NWMAKNIQKMLVDGIETWAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGM 239 (611)
Q Consensus 160 ~~~~~~~~~~l~~~~~~~~~~~~~~kV~Ve~~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~G~Q~~~ 239 (611)
.|+.+.+.+-|..|.. ++|++ =-.|+|||+|||||+|++++-..+|| +|.+..+--|.|....
T Consensus 9 ~fi~~~i~~dl~~~~~--------~~v~t-RFaPSPtG~LHIGhaRtal~n~l~Ar-----~~gG~fiLRieDTD~~--- 71 (553)
T 1qtq_A 9 NFIRQIIDEDLASGKH--------TTVHT-RFPPEPNGYLHIGHAKSICLNFGIAQ-----DYKGQCNLRFDDTNPV--- 71 (553)
T ss_dssp CHHHHHHHHHHHHTSC--------SSCEE-EECCCTTSCCBHHHHHHHHHHHHHHH-----HTTCEEEEEECCCCGG---
T ss_pred hHHHHHHHhHhhcCCc--------CceEE-EeCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEEECCCCch---
Confidence 4677777766655432 23443 56899999999999999999666666 5666666667765320
Q ss_pred HHHHHHhhCCCCCccccchHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHhc
Q 007251 240 LIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRL 319 (611)
Q Consensus 240 l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~~~~~~~d~~~~~~a~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~L 319 (611)
+ . ...+.+.|.++|+.|
T Consensus 72 --------------------------------R--~-----------------------------~~e~~~~I~edL~wL 88 (553)
T 1qtq_A 72 --------------------------------K--E-----------------------------DIEYVESIKNDVEWL 88 (553)
T ss_dssp --------------------------------G--C-----------------------------CHHHHHHHHHHHHHT
T ss_pred --------------------------------h--c-----------------------------CHHHHHHHHHHHHHc
Confidence 0 0 012234566688888
Q ss_pred CCeeee--cccccccCcHHHHHHHHHhCCCceee--------------------------------------------cc
Q 007251 320 RVDLEE--KGESFYNPYIPGVIDELSKQGLVEES--------------------------------------------QG 353 (611)
Q Consensus 320 gV~f~~--~~Es~y~~~v~~vi~~L~~~G~~~e~--------------------------------------------dG 353 (611)
|+..+. ..-|.|.+.+.+.+++|.++|++|.. +|
T Consensus 89 Gl~wde~~~~qSer~~~~~~~a~~Li~~G~AY~c~ct~eel~~~r~~~~~~g~~~~~R~~s~ee~~~~fe~m~~G~~~~g 168 (553)
T 1qtq_A 89 GFHWSGNVRYSSDYFDQLHAYAIELINKGLAYVDELTPEQIREYRGTLTQPGKNSPYRDRSVEENLALFEKMRAGGFEEG 168 (553)
T ss_dssp TCCCSSSCEEGGGGHHHHHHHHHHHHHTTSEEEECCCHHHHHHHHCCSSSCCCCCTTTTCCHHHHHHHHHHHHTTCSCTT
T ss_pred CCCCCCCCeehcccHHHHHHHHHHHHHCCCceecCCCHHHHHHHhcccccCCCCCccccCchhhhHhHHHHHhCCCccCC
Confidence 887732 22355555566777788888888731 11
Q ss_pred cEEEec--c--C---CCCCeEEEc---------cC---CcccccCcchhHHHhhhhccCCCeEEEEEeCCccccHHHHHH
Q 007251 354 ARVIFI--E--G---VNIPLIIVK---------SD---GGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFS 414 (611)
Q Consensus 354 a~~~~~--~--g---~~~d~Vl~k---------sD---G~~tY~t~DiA~~~~r~~~~~~d~iIyV~g~dq~~hf~~l~~ 414 (611)
..+++. + . ...|.|+.| +| |.|+|. +|...+-. ..+.+++| .|.+|..|-+....
T Consensus 169 ~~~lR~kid~~~~~~~~~D~Vl~R~~~~~h~~~~d~w~g~PtY~---la~vvDDh-~~GITHvi--Rg~e~~~n~~~q~~ 242 (553)
T 1qtq_A 169 KACLRAKIDMASPFIVMRDPVLYRIKFAEHHQTGNKWCIYPMYD---FTHCISDA-LEGITHSL--CTLEFQDNRRLYDW 242 (553)
T ss_dssp SCEEEECSCTTCSSGGGSSCEEEEECCCCBTTTBTSCSEEECHH---HHHHHHHH-HTTCSEEE--EEGGGTTTHHHHHH
T ss_pred ceEEEEecccccCCCCCCCcEEEEecCCCCCccCCCCccccccc---cccEEEec-cCCcceEe--eccchhhhHHHHHH
Confidence 122221 1 0 113678888 55 366665 66665544 46889885 89999988887777
Q ss_pred HHHHcCCCCCCCCCCCcEEEEeeeeEEcCCCceeeeccCC---------------cccHHHHHHHH
Q 007251 415 AAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSE---------------VVRLVDLLDEA 465 (611)
Q Consensus 415 ~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~dG~kmSkR~G~---------------~v~l~dLldea 465 (611)
+.+++|+.. . ++..|. +.+ +.+|+|||||+|+ +.++.++++++
T Consensus 243 l~~alg~~~----~-P~~~~f--~hL-n~~g~KLSKR~~~~~v~~g~v~gWDDPr~~Ti~~lr~rG 300 (553)
T 1qtq_A 243 VLDNITIPV----H-PRQYEF--SRL-NLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRG 300 (553)
T ss_dssp HHHTSCCSC----C-CEEEEE--CCC-CBTTSCCCHHHHHHHHHTTSSSCTTCTTSCBHHHHHHHT
T ss_pred HHHHcCCCC----C-CCeEEE--Eee-cCCCccccccccccccccCcccCCCCcchhhHHHHHHCC
Confidence 778899841 1 333344 555 5789999999986 67889998874
No 37
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=99.39 E-value=1.4e-12 Score=149.68 Aligned_cols=213 Identities=14% Similarity=0.025 Sum_probs=139.2
Q ss_pred HHHHHHHHHHHHHcCCCCCCccCCCceEEEEecCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCchhHHH
Q 007251 159 KNWMAKNIQKMLVDGIETWAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFG 238 (611)
Q Consensus 159 ~~~~~~~~~~~l~~~~~~~~~~~~~~kV~Ve~~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~G~Q~~ 238 (611)
..|+.+.+..-|..|.. ++|+. =-.|+|||+|||||+|++++-..+|| +|.+..+--|.|....
T Consensus 48 ~~fi~~ii~~dl~~g~~--------~~v~t-RFaPSPtG~LHIGhARtAL~n~l~Ar-----~~gG~fiLRIEDTD~~-- 111 (851)
T 2hz7_A 48 PNFITEIIERDLEAGKY--------PRVVT-RFPPDPSGYAHLGHVFASLLDFNTAR-----QYGGQFNLRMDDTNPE-- 111 (851)
T ss_dssp CCHHHHHHHHHHHTTSC--------SSCEE-EECCCSSSCCBHHHHHHHHHHHHHHH-----HTTCEEEEEECCCCTT--
T ss_pred HHHHHHHHHHHhhcCCc--------CceEE-EeCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEEECcCCcc--
Confidence 35777888776654432 23433 45899999999999999999655555 5677777777775320
Q ss_pred HHHHHHHhhCCCCCccccchHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHh
Q 007251 239 MLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKR 318 (611)
Q Consensus 239 ~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~~~~~~~d~~~~~~a~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~ 318 (611)
+ . ...+.+.|.++|+.
T Consensus 112 ---------------------------------R--~-----------------------------~~e~~~~IledL~w 127 (851)
T 2hz7_A 112 ---------------------------------L--A-----------------------------RQEYVDSIADDLKW 127 (851)
T ss_dssp ---------------------------------T--C-----------------------------CHHHHHHHHHHHHH
T ss_pred ---------------------------------c--c-----------------------------cHHHHHHHHHHHHH
Confidence 0 0 01223456778999
Q ss_pred cCCeee--ecccccccCcHHHHHHHHHhCCCceeec----------------c---------------------------
Q 007251 319 LRVDLE--EKGESFYNPYIPGVIDELSKQGLVEESQ----------------G--------------------------- 353 (611)
Q Consensus 319 LgV~f~--~~~Es~y~~~v~~vi~~L~~~G~~~e~d----------------G--------------------------- 353 (611)
||+..+ ...-|.|.+...++++.|.++|++|... |
T Consensus 128 LGl~wde~~~~qSer~d~y~e~a~~LI~~G~AY~c~ct~eel~~~r~~~~~~G~~s~~R~ls~ee~l~~fe~m~~G~~~~ 207 (851)
T 2hz7_A 128 LGLDWGEHFYYASDYFDRYYAYAEQLIRQGDAYVESVSPEELSRLRGNATTPGTPSPYRDRSVEENLDLLRRMKAGEFAD 207 (851)
T ss_dssp HTCCCTTCEEEGGGGHHHHHHHHHHHHHTTSEEEECSCHHHHHHHHCBTTBCCCCCTTTTCCHHHHHHHHHHHHTTCSCT
T ss_pred cCCCCCCCcccHhhhHHHHHHHHHHHHHCCCcEeecCCHHHHHHHhcchhccCCCcccccCCHHHHhhHHHHHhcCCccc
Confidence 999873 2234666677788889999999888411 1
Q ss_pred -cEEEec--c--C---CCCCeEEEccC------------CcccccCcchhHHHhhhhccCCCeEEEEEeCCccccHHHHH
Q 007251 354 -ARVIFI--E--G---VNIPLIIVKSD------------GGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVF 413 (611)
Q Consensus 354 -a~~~~~--~--g---~~~d~Vl~ksD------------G~~tY~t~DiA~~~~r~~~~~~d~iIyV~g~dq~~hf~~l~ 413 (611)
..++++ + . ...|.|+.|++ |.|+| |+|...+-. ..+.+|+| .|.||..|-....
T Consensus 208 g~~vlR~Kid~~~~~~~~~DfVl~R~~~~~h~~~gd~w~g~PtY---hfA~vVDD~-~~GITHVi--RG~D~~~n~~~q~ 281 (851)
T 2hz7_A 208 GEHVLRAKIDLTAPNMKLRDPVLYRIVNKPHFRTSDEWHIYPAY---DFEHPLQDA-IEGVTHSM--CSLEFVDNRAIYD 281 (851)
T ss_dssp TSCEEEECCCTTCSSGGGSSCEEEEECCCCBTTTBTSCSEEECH---HHHHHHHHH-HHTCSEEE--EEGGGTTTHHHHH
T ss_pred CCeeEEEeccccccCCCCCCcEEEEecCCCCCccCCCCcccccc---ceeeEeeec-cCCcceee--cchhhhhChHHHH
Confidence 112221 1 0 11377888876 23344 466655543 46888886 8999998888776
Q ss_pred HHHHHcCCCCCCCCCCCcEEEEeeeeEEcCCCceeeeccCC---------------cccHHHHHHHH
Q 007251 414 SAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSE---------------VVRLVDLLDEA 465 (611)
Q Consensus 414 ~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~dG~kmSkR~G~---------------~v~l~dLldea 465 (611)
.+.+++|+. ..+...|. +.+. .+|.|||||+|+ ..++.+|++.+
T Consensus 282 ~l~~alG~~-----~~P~~~~f--ahLn-~~g~KLSKR~g~~~v~~g~v~gwDDPr~~TI~~lr~rG 340 (851)
T 2hz7_A 282 WLMEKLNFD-----PRPHQYEF--GRRG-LEYTITSKRKLRELVQAGRVSGWDDPRMPTLRAQRRLG 340 (851)
T ss_dssp HHHHHTTCS-----SCCEEEEE--CCEE-ETTCCCCHHHHHHHHHTTSSSSTTCTTSSBHHHHHHHT
T ss_pred HHHHHcCCC-----CCCCceEE--EEec-CCCccccccccccccccCcccCCCCcchhHHHHHHHcC
Confidence 778899984 11333343 5554 578999999986 56788888874
No 38
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=98.25 E-value=2.3e-06 Score=89.45 Aligned_cols=62 Identities=16% Similarity=0.262 Sum_probs=49.4
Q ss_pred cCCCeEEEEEeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEeeeeEEcCCCceeeeccCCcccHHHHHH
Q 007251 392 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLD 463 (611)
Q Consensus 392 ~~~d~iIyV~g~dq~~hf~~l~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~dG~kmSkR~G~~v~l~dLld 463 (611)
+++|.+ ++|.||..|+..-..+++.+|+. .+...|. .++.+.+|+|||||.||+|.+.|--+
T Consensus 169 ~~~~~v--~~G~DQ~~~~~l~rdla~~~~~~------~p~~l~~--pll~~l~G~KMSKS~~n~I~l~d~p~ 230 (323)
T 2cyb_A 169 LGVDLA--VGGIDQRKIHMLARENLPRLGYS------SPVCLHT--PILVGLDGQKMSSSKGNYISVRDPPE 230 (323)
T ss_dssp TTCSEE--EEEGGGHHHHHHHHHHGGGGTCC------CCEEEEE--CCCBCTTSSBCCTTTTCSCBTTCCHH
T ss_pred cCCCEE--EechhhHHHHHHHHHHHHhcCCC------CceEEec--CcccCCCCCcccCCcCceeCCCCCHH
Confidence 577766 48999999999888888888874 2445665 55888899999999999999886433
No 39
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=97.94 E-value=1.8e-05 Score=84.76 Aligned_cols=63 Identities=13% Similarity=0.112 Sum_probs=40.5
Q ss_pred cCCCeEEEEEeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEeeeeEEcCC-CceeeeccCCc-ccHHHHHHH
Q 007251 392 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGED-GKRLRTRFSEV-VRLVDLLDE 464 (611)
Q Consensus 392 ~~~d~iIyV~g~dq~~hf~~l~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~d-G~kmSkR~G~~-v~l~dLlde 464 (611)
++++.++ .|.||..|+.....+++.+|+. .+...|.+ +|.+.+ |+|||||.||. |.|.|=-++
T Consensus 181 ~~~~~v~--~G~DQ~~~~~l~rdl~~r~~~~------~p~~l~~p--ll~gl~~G~KMSKS~~ns~I~L~D~p~~ 245 (394)
T 2dlc_X 181 LDVDCQF--GGVDQRKIFVLAEENLPSLGYK------KRAHLMNP--MVPGLAQGGKMSASDPNSKIDLLEEPKQ 245 (394)
T ss_dssp TTCSEEE--EEGGGHHHHHHHHHHGGGGTCC------CCEEEEEC--CCCCCC----------CCSCBTTCCHHH
T ss_pred hCCCEEe--cCccHHHHHHHHHHHHHHcCCC------CCEEEecc--cccCCCCCCcCCCCCCCCEEeccCCHHH
Confidence 5777664 8999999999988999999984 24556664 577888 99999999996 887664444
No 40
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=97.93 E-value=1.5e-05 Score=84.85 Aligned_cols=60 Identities=17% Similarity=0.147 Sum_probs=40.7
Q ss_pred cCCCeEEEEEeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEeeeeEEcCCCceeeeccCC-cccHHHH
Q 007251 392 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSE-VVRLVDL 461 (611)
Q Consensus 392 ~~~d~iIyV~g~dq~~hf~~l~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~dG~kmSkR~G~-~v~l~dL 461 (611)
++++.++ +|.||..|+..-..+++.+|+. .+...|. .+|.+.+|+|||||.|| .|.|.|=
T Consensus 177 ~~a~~v~--~G~DQ~~~~~l~rdl~~r~~~~------~p~~l~~--pll~gldG~KMSKS~~ns~I~L~d~ 237 (372)
T 1n3l_A 177 LKVDAQF--GGIDQRKIFTFAEKYLPALGYS------KRVHLMN--PMVPGLTGSKMSSSEEESKIDLLDR 237 (372)
T ss_dssp TTCSEEE--EEGGGHHHHHHHHHHGGGGTCC------CCEEEEE--CCCCCSSCC-------CCSCBTTCC
T ss_pred hcCCEEE--cChhHHHHHHHHHHHHHHcCCC------CCEEEec--CccCCCCcccccCCCCCCeEeccCC
Confidence 5677664 8999999999988989999874 2445565 45888899999999999 6887654
No 41
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=97.36 E-value=0.00072 Score=70.16 Aligned_cols=60 Identities=12% Similarity=0.047 Sum_probs=41.2
Q ss_pred cCCCeEEEEEeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEeeeeEEcCCC-ceeeeccCCcccHHHHHHHH
Q 007251 392 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDG-KRLRTRFSEVVRLVDLLDEA 465 (611)
Q Consensus 392 ~~~d~iIyV~g~dq~~hf~~l~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~dG-~kmSkR~G~~v~l~dLldea 465 (611)
.+++.++ +|.||..|+.....+ .- + .+...|.+ +|.+.+| +|||||.|+.|.|.|=-+++
T Consensus 162 ~~~~~v~--~G~DQ~~~~~l~R~i----~~-~-----~~~~~~~~--~l~~l~G~~KMSKS~~~~I~L~d~~~~i 222 (314)
T 2zp1_A 162 LGVDVAV--GGMEQRKIHMLAREL----LP-K-----KVVCIHNP--VLTGLDGEGKMSSSKGNFIAVDDSPEEI 222 (314)
T ss_dssp HTCSEEE--EEGGGHHHHHHHHHH----SS-S-----CCEEEEEC--CCBCTTSSSBCCTTTTCSCBTTCCHHHH
T ss_pred hCCCEEE--cChhHHHHHHHHHHh----cC-C-----CcEEeecc--ccccCCcccccCCCCcceecCCCCHHHH
Confidence 4677664 899999988544443 21 1 23455654 5778889 79999999999887655553
No 42
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=96.82 E-value=0.0012 Score=70.07 Aligned_cols=59 Identities=19% Similarity=0.249 Sum_probs=41.4
Q ss_pred EEEEeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEeeeeEEcCCCceeeecc-CCcccHHH
Q 007251 398 IYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRF-SEVVRLVD 460 (611)
Q Consensus 398 IyV~g~dq~~hf~~l~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~dG~kmSkR~-G~~v~l~d 460 (611)
+--+|.||..|+..-..++..+|.... ...+...|.. ++.+-+|.|||||. ++.|.+.|
T Consensus 211 ~VPVG~DQ~~hleltRdiA~rfn~~~~--~~~P~~~~~~--~~pgldG~KmS~S~~ns~I~l~D 270 (372)
T 3a04_A 211 VVPVGADQDPHLRLTRDLADRMAGVVE--LERPASTYHK--LQPGLDGRKMSSSRPDSTIFLTD 270 (372)
T ss_dssp EEEEEGGGHHHHHHHHHHHHHTTTTSC--CCCCEEEEEC--CCBCTTSSBCCTTSGGGSCBTTC
T ss_pred ecccchhhHHHHHHHHHHHHHhcCccc--ccChhhhhhc--ccCCCCCCccCCCCCCcccccCC
Confidence 334799999999999999999874210 1123455553 46778999999988 44676654
No 43
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=96.45 E-value=0.0095 Score=67.92 Aligned_cols=64 Identities=13% Similarity=0.075 Sum_probs=46.0
Q ss_pred cCCCeEEEEEeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEeeeeEEcC-CCc-eeeeccC-CcccHHHHHHH
Q 007251 392 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGE-DGK-RLRTRFS-EVVRLVDLLDE 464 (611)
Q Consensus 392 ~~~d~iIyV~g~dq~~hf~~l~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~-dG~-kmSkR~G-~~v~l~dLlde 464 (611)
+++|.+ .+|.||..|+..-..+++.+|+.+ .+.+.|. .+|.+- ||. |||||.| +.|.|.|=-++
T Consensus 182 ~~ad~v--pvG~DQ~~~l~l~Rdla~r~n~~~-----~p~~l~~--~~l~gL~dG~~KMSKS~~~~~I~L~D~p~~ 248 (690)
T 3p0j_A 182 LKADIC--QLGLDQRKVNMLAREYCDLIGRKL-----KPVILSH--HMLAGLKQGQAKMSKSDPDSAIFMEDTEED 248 (690)
T ss_dssp TTCSEE--CCBGGGHHHHHHHHHHHHHTTCCC-----CCEEEEB--CCCCCSSTTCSSCBTTBGGGSCBTTCCHHH
T ss_pred hCCCEE--eccccHHHHHHHHHHHHHHhCCCC-----CceEeec--CeeecCCCCCcCCCCCCCCCeeeccCCHHH
Confidence 456754 489999999999889999998742 2334454 457666 884 9999998 68877654444
No 44
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=95.17 E-value=0.0078 Score=63.38 Aligned_cols=59 Identities=12% Similarity=-0.019 Sum_probs=34.0
Q ss_pred cCCCeEEEEEeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEeeeeEEcCCCceeeeccCCcccHHH
Q 007251 392 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVD 460 (611)
Q Consensus 392 ~~~d~iIyV~g~dq~~hf~~l~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~dG~kmSkR~G~~v~l~d 460 (611)
++++.+ ++|.||..|+..-..+++.+|..+ +...+. -++.+.||+|||||.||.|.|.|
T Consensus 209 ~~~~i~--p~G~DQ~~~i~l~rdla~r~n~~~------~~~l~~--pll~~ldG~KMSKS~~naI~L~d 267 (356)
T 2pid_A 209 YGCRVQ--LGGSDQLGNIMSGYEFINKLTGED------VFGITV--PLITSTTGAKLGKSAGNAVWLNR 267 (356)
T ss_dssp HCCCEE--EEEGGGHHHHHHHHHHHHHHSSCC------CEEEEE--CCCC-------------CCBSST
T ss_pred CCCcEE--eccHHHHHHHHHHHHHHHHhCCCC------cccccc--ccccCCCcccccCCCCCeeeccC
Confidence 467754 489999999999999999998731 223343 55778899999999999998876
No 45
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=95.17 E-value=0.0066 Score=63.11 Aligned_cols=58 Identities=12% Similarity=0.030 Sum_probs=45.3
Q ss_pred CCCeEEEEEeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEeeeeEEcCCCceeeeccCCcccHHH
Q 007251 393 KAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVD 460 (611)
Q Consensus 393 ~~d~iIyV~g~dq~~hf~~l~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~dG~kmSkR~G~~v~l~d 460 (611)
+++ |=++|.||..|+..-..+++.+|..+ + ..+...++.+.+|+|||||.||.|.|.|
T Consensus 191 ~~~--v~~gG~DQ~~~i~l~rdla~r~n~~~------~--~~l~~pll~gldG~KMSKS~~n~I~L~d 248 (322)
T 2yxn_A 191 GVV--LCIGGSDQWGNITSGIDLTRRLHQNQ------V--FGLTVPLITKADGTKFGKTEGGAVWLDP 248 (322)
T ss_dssp CEE--EEEECTTCHHHHHHHHHHHHHHHCCC------C--EEEECCCCBCTTSCBTTEETTEECBSST
T ss_pred Cce--EEecCchhHHHHHHHHHHHHHhCCCC------c--eeeccCccCCCCcccccCCCCCeeeccC
Confidence 555 54679999999999999999988631 2 2333456778899999999999998886
No 46
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=94.80 E-value=0.037 Score=59.68 Aligned_cols=63 Identities=13% Similarity=0.157 Sum_probs=41.5
Q ss_pred CCCeEEEEEeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEeeeeEEcCCC--ceeeeccCC-cccHHHHHHHH
Q 007251 393 KAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDG--KRLRTRFSE-VVRLVDLLDEA 465 (611)
Q Consensus 393 ~~d~iIyV~g~dq~~hf~~l~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~dG--~kmSkR~G~-~v~l~dLldea 465 (611)
+++.+ .+|.||..|+..-..+++.+|+. .+...|. -+|.+-+| +|||||.|| .|.|.|=-+++
T Consensus 249 ~~~lv--p~G~DQ~~~i~l~Rdla~r~~~~------~p~~l~~--~ll~gLdG~~~KMSKS~~nsaI~L~d~p~~i 314 (432)
T 2ip1_A 249 TPCLI--PCAIDQDPYFRVCRDVADKLKYS------KPALLHS--RFFPALQGSTTKMSASDDTTAIFMTDTPKQI 314 (432)
T ss_dssp CCEEE--EEEGGGHHHHHHHHHHHHHHTSC------CCEEEEE--CCCCCTTC--------CGGGCCBTTCCHHHH
T ss_pred CceEE--EeccCcHHHHHHHHHHHHHhCCC------Cceeecc--ccccCCCCCccccCCCCCCCeEeccCCHHHH
Confidence 44444 48999999999988999999973 2334554 45788889 899999999 89887644443
No 47
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=94.45 E-value=0.018 Score=62.15 Aligned_cols=59 Identities=12% Similarity=0.001 Sum_probs=46.1
Q ss_pred cCCCeEEEEEeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEeeeeEEcCCCceeeeccCC-cccHHH
Q 007251 392 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSE-VVRLVD 460 (611)
Q Consensus 392 ~~~d~iIyV~g~dq~~hf~~l~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~dG~kmSkR~G~-~v~l~d 460 (611)
++++.. ++|.||..|+..-..+++.+|..+ +...+ .-++.+.||+|||||.|| .|.|+|
T Consensus 186 ~~~~i~--~gG~DQ~~ni~lgrdlarr~~~~~------~~~l~--~plL~~ldG~KMSKS~~nsaI~L~d 245 (432)
T 2jan_A 186 HGCTLQ--IGGADQWGNIIAGVRLVRQKLGAT------VHALT--VPLVTAADGTKFGKSTGGGSLWLDP 245 (432)
T ss_dssp HCCCEE--EECSTTHHHHHHHHHHHHHHHCCC------CEEEE--CCCCBCTTSCBTTBCSSSCBCBSST
T ss_pred CCCcEE--eccHHHHHHHHHHHHHHHHhCCCC------ccccc--cccccCCCcCcCCCCCCCCeEEccC
Confidence 477755 489999999999889999888632 22333 355788899999999999 898876
No 48
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=94.18 E-value=0.015 Score=60.91 Aligned_cols=66 Identities=21% Similarity=0.297 Sum_probs=44.6
Q ss_pred cCCCeEEEEEeCCccccHHHHHHHHHHcCCC-CCCCCCCCcEEEEeeeeEEcCCCceeeeccCCcccHHH
Q 007251 392 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWL-SADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVD 460 (611)
Q Consensus 392 ~~~d~iIyV~g~dq~~hf~~l~~~~~~lG~~-~~~~~~~~~~~Hv~~g~V~~~dG~kmSkR~G~~v~l~d 460 (611)
++++.+ .+|.||..|+..-..+++.+++. .+ .-..+...+...-+|.+-+|+|||||.||.|.|.|
T Consensus 152 ~~~~~v--pvG~DQ~~hi~l~rdia~r~n~~yg~-~f~~P~~~~~~~~~l~gldG~KMSKS~~n~I~L~d 218 (340)
T 2g36_A 152 YKAEGV--PVGEDQVYHIELTREIARRFNYLYDE-VFPEPEAILSRVPKLPGTDGRKMSKSYGNIINLEI 218 (340)
T ss_dssp TTCSEE--EECGGGHHHHHHHHHHHHHHHHHSCC-CCCCCEEEECCSCCCCCTTSSCCCGGGTCCCBTTC
T ss_pred hCCCEE--EcccchHHHHHHHHHHHHHhhhhccc-ccCCchhhhccccccCCCCccccCCCCCCeEeeeC
Confidence 577765 49999999999888888776421 00 00012222211245777889999999999998876
No 49
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=94.05 E-value=0.038 Score=59.63 Aligned_cols=58 Identities=14% Similarity=0.240 Sum_probs=45.6
Q ss_pred CCCeEEEEEeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEeeeeEEcCCCc-eeeeccCCcccHHH
Q 007251 393 KAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGK-RLRTRFSEVVRLVD 460 (611)
Q Consensus 393 ~~d~iIyV~g~dq~~hf~~l~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~dG~-kmSkR~G~~v~l~d 460 (611)
++|.+ .+|.||..|+..-..+++.+|..+ ....|. .++.+.||. |||||.||.|.|.|
T Consensus 187 ~~~l~--~gG~DQ~~ni~l~rdlarr~~~~~------~~~lt~--pll~gldG~~KMSKS~~n~I~L~d 245 (432)
T 1h3f_A 187 RADVE--MGGTDQRFNLLVGREVQRAYGQSP------QVCFLM--PLLVGLDGREKMSKSLDNYIGLTE 245 (432)
T ss_dssp TCSEE--EEEGGGHHHHHHHHHHHHHTTCCC------CEEEEE--CCCBCTTSSSBCCGGGTCCCBTTS
T ss_pred CccEE--EechHHHHHHHHHHHHHHHhCCCC------ceEeec--ccccCCCCccccCcCCCCeeCCCC
Confidence 46655 489999999998889999998642 223344 557888996 99999999999887
No 50
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=93.93 E-value=0.046 Score=59.72 Aligned_cols=59 Identities=20% Similarity=0.270 Sum_probs=45.4
Q ss_pred EeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEeeeeEEcCCC--ceeeeccCC-cccHHHHHHHHHH
Q 007251 401 TDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDG--KRLRTRFSE-VVRLVDLLDEAKN 467 (611)
Q Consensus 401 ~g~dq~~hf~~l~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~dG--~kmSkR~G~-~v~l~dLldea~~ 467 (611)
+|.||..|+..-..+++.+|+. .+...|. -+|.+-+| +|||||.|| .|.|.|=-+++..
T Consensus 309 vG~DQ~~~i~l~Rdla~r~~~~------~p~~l~~--pll~gLdG~~~KMSKS~~nsaI~L~d~p~~i~k 370 (477)
T 1r6t_A 309 CAIDQDPYFRMTRDVAPRIGYP------KPALLHS--TFFPALQGAQTKMSASDPNSSIFLTDTAKQIKT 370 (477)
T ss_dssp EEGGGHHHHHHHHHHGGGGTCC------CCEEEEE--CCCEETTEEEEECCTTSTTCCCBTTCCHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHhCCC------Cceeeec--ccccCCCCCccccCCCCCCCceeecCCHHHHHH
Confidence 7999999999888889999973 2334555 45788899 799999999 8988765555433
No 51
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=93.74 E-value=0.041 Score=59.16 Aligned_cols=59 Identities=20% Similarity=0.121 Sum_probs=45.7
Q ss_pred cCCCeEEEEEeCCccccHHHHHHHHHHc-CCCCCCCCCCCcEEEEeeeeEEcCCCceeeeccCCcccHHH
Q 007251 392 EKAEWIIYVTDVGQQLHFDMVFSAAKRA-GWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVD 460 (611)
Q Consensus 392 ~~~d~iIyV~g~dq~~hf~~l~~~~~~l-G~~~~~~~~~~~~~Hv~~g~V~~~dG~kmSkR~G~~v~l~d 460 (611)
++++.. ++|.||..|+..-..+++.+ |..+ +...+. -++.+.||+|||||.||.|.|+|
T Consensus 185 ~~~~i~--~gG~DQ~~ni~~grdla~r~~~~~~------~~~l~~--pll~~ldG~KMSKS~~naI~L~d 244 (420)
T 1jil_A 185 LNCKIQ--VGGSDQWGNITSGIELMRRMYGQTD------AYGLTI--PLVTKSDGKKFGKSESGAVWLDA 244 (420)
T ss_dssp HCEEEE--EEEGGGHHHHHHHHHHHHHHHCCCC------CEEEEE--CCCBCTTSCBTTBCSSSBCBSST
T ss_pred CCCcEE--eccHHHHHHHHHHHHHHHHhcCCCC------eeEeec--ccccCCccccccCCCCCeEecCC
Confidence 355533 58999999999998999998 7631 233444 45888899999999999998876
No 52
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=93.71 E-value=0.025 Score=59.10 Aligned_cols=62 Identities=23% Similarity=0.278 Sum_probs=44.7
Q ss_pred cCCCeEEEEEeCCccccHHHHHHHHHHc----C--CCCCCCCCCCcEEEEee-eeEEcCCC-ceeeeccCCcccHHHH
Q 007251 392 EKAEWIIYVTDVGQQLHFDMVFSAAKRA----G--WLSADDSTYPKASHVGF-GLVLGEDG-KRLRTRFSEVVRLVDL 461 (611)
Q Consensus 392 ~~~d~iIyV~g~dq~~hf~~l~~~~~~l----G--~~~~~~~~~~~~~Hv~~-g~V~~~dG-~kmSkR~G~~v~l~dL 461 (611)
++++.+ .+|.||..|+..-..+++.+ | +. .+...|... -+|.+-+| +|||||.||.|.|.|=
T Consensus 140 ~~~~lv--p~G~DQ~~~i~l~rdla~r~n~~~g~~f~------~P~~~~~~~~p~l~gldG~~KMSKS~~n~I~L~d~ 209 (337)
T 2el7_A 140 YKADTV--PVGEDQVQHIELTREIARRFNHLFGETFP------EPQALLNPEAPRVPGIDGKAKMSKSLGNTIGLLEP 209 (337)
T ss_dssp TTCCEE--ECCGGGCHHHHHHHHHHHHHHHHHSSCCC------CCEEECCTTSCCCBCTTSSSBCCTTTTCCCBSSSC
T ss_pred hCCcEE--EcccchHHHHHHHHHHHHHHHhhcCcccC------CCeeecccccccccCCCCccccCCCCCCeeeCcCC
Confidence 567765 48999999999888887765 5 21 233444321 35778889 8999999999988653
No 53
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=93.63 E-value=0.037 Score=59.47 Aligned_cols=59 Identities=15% Similarity=0.116 Sum_probs=44.7
Q ss_pred cCCCeEEEEEeCCccccHHHHHHHHHHc-CCCCCCCCCCCcEEEEeeeeEEcCCCceeeeccCCcccHHH
Q 007251 392 EKAEWIIYVTDVGQQLHFDMVFSAAKRA-GWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVD 460 (611)
Q Consensus 392 ~~~d~iIyV~g~dq~~hf~~l~~~~~~l-G~~~~~~~~~~~~~Hv~~g~V~~~dG~kmSkR~G~~v~l~d 460 (611)
++++.. ++|.||..|+..-..+++.+ |..+ +...+. .++.+.||+|||||.||.|.|+|
T Consensus 184 ~~~~i~--~gG~DQ~~ni~lgrdlarr~~~~~~------~~~lt~--pll~~ldG~KMSKS~~naI~L~d 243 (419)
T 2ts1_A 184 EGCRLQ--IGGSDQWGNITAGLELIRKTKGEAR------AFGLTI--PLVTKADGTKFGKTESGTIWLDK 243 (419)
T ss_dssp HCEEEE--EEEGGGHHHHHHHHHHHHHHHC--C------CEEEEE--CCCCCTTSCCTTCCSSCCCBSST
T ss_pred CCCcEE--eccHHHHHHHHHHHHHHHHhcCCCC------eeeccc--ccccCCCcccccCCCCCeEecCC
Confidence 355533 58999999999988999998 7631 233444 55788899999999999998877
No 54
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=93.56 E-value=0.051 Score=58.59 Aligned_cols=58 Identities=21% Similarity=0.272 Sum_probs=44.7
Q ss_pred EeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEeeeeEEcCCC--ceeeeccCC-cccHHHHHHHHH
Q 007251 401 TDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDG--KRLRTRFSE-VVRLVDLLDEAK 466 (611)
Q Consensus 401 ~g~dq~~hf~~l~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~dG--~kmSkR~G~-~v~l~dLldea~ 466 (611)
+|.||..|+..-..+++.+|+. .+...|. -+|.+-+| +|||||.|| .|.|.|=-+++.
T Consensus 262 vG~DQ~~~i~l~Rdla~r~~~~------~P~~l~~--pll~gLdG~~~KMSKS~~nsaI~L~D~p~~I~ 322 (437)
T 1r6u_A 262 CAIDQDPYFRMTRDVAPRIGYP------KPALLHS--TFFPALQGAQTKMSASDPNSSIFLTDTAKQIK 322 (437)
T ss_dssp EEGGGHHHHHHHHHHGGGGTCC------CCEEEEE--CCCEETTEEEEECCTTSSSSCCBTTCCHHHHH
T ss_pred eehhhHHHHHHHHHHHHHhCCC------CceEeec--ccccCCCCCccccCCCCCCCeeeccCCHHHHH
Confidence 6999999999888888999973 2334554 45788899 799999999 898876555443
No 55
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=93.33 E-value=0.016 Score=60.21 Aligned_cols=66 Identities=15% Similarity=0.224 Sum_probs=44.7
Q ss_pred cCCCeEEEEEeCCccccHHHHHHHHHHcCCC-CCCCCCCCcEEEE-eeeeEEcCCCceeeeccCCcccHHH
Q 007251 392 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWL-SADDSTYPKASHV-GFGLVLGEDGKRLRTRFSEVVRLVD 460 (611)
Q Consensus 392 ~~~d~iIyV~g~dq~~hf~~l~~~~~~lG~~-~~~~~~~~~~~Hv-~~g~V~~~dG~kmSkR~G~~v~l~d 460 (611)
+++|.+. +|.||..|+..-..+++.+|.. .+ .-..+...|. ...+|.+-+|+|||||.||.|.|.|
T Consensus 138 ~~~~~vp--vG~DQ~~hi~l~Rdia~r~n~~~g~-~f~~P~~~~~~~~~~l~~l~G~KMSKS~~n~I~L~d 205 (322)
T 3tzl_A 138 FDTRIVP--VGKDQIQHVEIARDIALKVNNEWGE-IFTLPEARVNEEVAVVVGTDGAKMSKSYQNTIDIFS 205 (322)
T ss_dssp TTCSEEE--CCGGGHHHHHHHHHHHHHHHHHHCS-CSCCCEEECCCSSCCCBCTTSSBCCGGGTCCCBSSC
T ss_pred hCCcEEE--eccchHHHHHHHHHHHHHhcccccC-CCCCchhhhccccccccCCCCCcCCCCCCCceecCC
Confidence 4677654 8999999999888888777530 00 0011233331 1345777899999999999998875
No 56
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=92.92 E-value=0.046 Score=57.67 Aligned_cols=62 Identities=16% Similarity=0.144 Sum_probs=45.6
Q ss_pred cCCCeEEEEEeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEeeeeEEcCC-----------------Cceeeec-cC
Q 007251 392 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGED-----------------GKRLRTR-FS 453 (611)
Q Consensus 392 ~~~d~iIyV~g~dq~~hf~~l~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~d-----------------G~kmSkR-~G 453 (611)
+++|.++ +|.||..|+..-..+++.+|+. .+...|. .+|.+-+ |+||||| .|
T Consensus 176 ~~~~~v~--~G~DQ~~~~~l~rdla~r~~~~------~p~~l~~--~ll~~l~g~~~~~~~~~~~~~~~~g~KMSKS~~~ 245 (364)
T 2cya_A 176 MDLDIAL--GGMDQRKAHMLARDVAEKLGRK------KPVAIHT--PIISSLQGPGRMEASQGEIDDVLAEVKMSKSKPE 245 (364)
T ss_dssp TTCSEEE--EEGGGHHHHHHHHHHHTTTTCC------CCEEEEE--CCCBCSSCC----------------CBCCSSSGG
T ss_pred cCCCEEe--ccchHHHHHHHHHHHHHHcCCC------Cceeecc--ceeeCCCcccccccccccccccccccccCCCCCC
Confidence 5677664 8999999999888999999873 2334555 3466666 7899999 68
Q ss_pred CcccHHHHHH
Q 007251 454 EVVRLVDLLD 463 (611)
Q Consensus 454 ~~v~l~dLld 463 (611)
+.|.|.|=-+
T Consensus 246 ~~I~L~d~p~ 255 (364)
T 2cya_A 246 TAVFVVDSDD 255 (364)
T ss_dssp GSCBTTCCHH
T ss_pred CEeeccCCHH
Confidence 8898865433
No 57
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=92.70 E-value=0.044 Score=57.57 Aligned_cols=67 Identities=16% Similarity=0.139 Sum_probs=43.3
Q ss_pred cCCCeEEEEEeCCccccHHHHHHHHHHcCCC-CCCCCCCCcEEEEeeeeEEcCCCc-eeeeccCCcccHHHH
Q 007251 392 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWL-SADDSTYPKASHVGFGLVLGEDGK-RLRTRFSEVVRLVDL 461 (611)
Q Consensus 392 ~~~d~iIyV~g~dq~~hf~~l~~~~~~lG~~-~~~~~~~~~~~Hv~~g~V~~~dG~-kmSkR~G~~v~l~dL 461 (611)
++++.+ .+|.||..|+..-..+++.++.. .+ .-..+...+....+|.+-||. |||||.||.|.|.|=
T Consensus 161 ~~~~~v--pvG~DQ~~hi~l~rdia~r~n~~yg~-~f~~P~~~~~~~~~l~~ldG~~KMSKS~~n~I~L~d~ 229 (351)
T 1yi8_B 161 FGATLV--PVGDDQLPMLEQTREIVRRFNALYAP-VLAEPQAQLSRVPRLPGLDGQAKMSKSLGNAIALGDS 229 (351)
T ss_dssp HTCSEE--EECGGGHHHHHHHHHHHHHHHHHTCS-CSCCCEEEECSSCSCCCTTSSSCCCTTTTCCCBTTCC
T ss_pred cCCCEE--EecCCcHHHHHHHHHHHHHHHhhccc-ccCCCeeeeecCccccCCCCccccCCCCCCeecCCCC
Confidence 567765 49999999999888888765310 00 000222222112457777897 999999999987654
No 58
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=92.33 E-value=0.049 Score=58.01 Aligned_cols=57 Identities=23% Similarity=0.316 Sum_probs=33.7
Q ss_pred EEeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEeeeeEEcCCC--ceeeeccCCcccHHHHHHH
Q 007251 400 VTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDG--KRLRTRFSEVVRLVDLLDE 464 (611)
Q Consensus 400 V~g~dq~~hf~~l~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~dG--~kmSkR~G~~v~l~dLlde 464 (611)
.+|.||..|+..-..+++.+|+.+ +...|. -++.+-+| +|||||.|+.|.|.|=-++
T Consensus 229 p~G~DQ~~~i~l~Rdla~r~~~~~------p~~l~~--~~l~gLdG~~~KMSKS~~~~I~L~D~p~~ 287 (395)
T 3i05_A 229 PQAIDQDPYFRLTRDIAPRLGYLK------PAVIHS--KFFPGLSGPKGKMSSSSGTAVLLTDTEKM 287 (395)
T ss_dssp EEEGGGHHHHHHHHHTHHHHTCCC------CEEEEE--CCCCCC-------------CCBTTCCHHH
T ss_pred EeccchHHHHHHHHHHHHHcCCCC------ceeecc--ccccCCCCCcccCCCCCCCcccCCCCHHH
Confidence 589999999998889999999842 334554 34777788 7999999999988753333
No 59
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=91.58 E-value=0.078 Score=56.44 Aligned_cols=57 Identities=21% Similarity=0.313 Sum_probs=33.3
Q ss_pred EEeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEeeeeEEcCCC--ceeeeccCC-cccHHHHHHH
Q 007251 400 VTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDG--KRLRTRFSE-VVRLVDLLDE 464 (611)
Q Consensus 400 V~g~dq~~hf~~l~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~dG--~kmSkR~G~-~v~l~dLlde 464 (611)
.+|.||..|+..-..+++.+|+.+ +...|. -++.+-+| +|||||.|| .|.|.|=-++
T Consensus 225 p~G~DQ~~~i~l~Rdla~r~~~~~------p~~l~~--~~l~gLdG~~~KMSKS~~nsaI~L~D~p~~ 284 (393)
T 3hv0_A 225 PHAIDQDPYFRMVRDVAPRLGYLK------PSSIHS--IFLPSLQGSQTKMSASVQNSSIFVNDNEES 284 (393)
T ss_dssp EEEGGGHHHHHHHHHHTGGGTCCC------CEEEEE--CCCCC-------------CCCCBTTCCHHH
T ss_pred ccccchHHHHHHHHHHHHHcCCCC------ceeecc--CcccCCCCCCcCCCCCCCCCeEeccCCHHH
Confidence 589999999998889999999742 334555 44777788 799999987 7877654343
No 60
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=91.30 E-value=0.15 Score=54.21 Aligned_cols=56 Identities=11% Similarity=0.111 Sum_probs=42.5
Q ss_pred EeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEeeeeEEcCCCc-eeeec-cCCcccHHHHHHH
Q 007251 401 TDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGK-RLRTR-FSEVVRLVDLLDE 464 (611)
Q Consensus 401 ~g~dq~~hf~~l~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~dG~-kmSkR-~G~~v~l~dLlde 464 (611)
+|.||..|+..-..+++.+|+.+ +.+.|. .+|.+-+|. ||||| .|+.|.|.|=-++
T Consensus 230 vG~DQ~~hl~l~Rdla~r~n~~~------p~~l~~--~~l~gLdG~~KMSKSd~~~~I~L~D~p~~ 287 (386)
T 3hzr_A 230 DSIKNVQFHSIIDQIATTLNFIQ------PTVLFH--KMVPLLSGVTKFDIPSDHNSILLSDNAKQ 287 (386)
T ss_dssp EEGGGHHHHHHHHHHHHHHTCCC------CEEEEE--CCCCCTTCTTCCCCCCTTTSCBTTCCHHH
T ss_pred cccchHHHHHHHHHHHHHcCCCC------ceEeec--CeeeCCCCCCccCcCCCCCeeecCCCHHH
Confidence 59999999999999999999842 234454 447777885 99999 7999988653333
No 61
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=91.29 E-value=0.14 Score=54.15 Aligned_cols=64 Identities=9% Similarity=0.056 Sum_probs=45.8
Q ss_pred cCCCeEEEEEeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEeeeeEEcC-CCc-eeeecc-CCcccHHHHHHH
Q 007251 392 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGE-DGK-RLRTRF-SEVVRLVDLLDE 464 (611)
Q Consensus 392 ~~~d~iIyV~g~dq~~hf~~l~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~-dG~-kmSkR~-G~~v~l~dLlde 464 (611)
+++|.+ .+|.||..|+..-..+++.+|+.. .+.+.|. .+|.+- ||. |||||. |+.|.|.|=-++
T Consensus 199 l~ad~v--pgG~DQ~~~l~l~Rdla~r~~~~~-----~~~~l~~--p~l~gL~dG~~KMSKS~~~~~I~L~D~p~~ 265 (373)
T 3vgj_A 199 LNVDIC--QLGIDQRKVNMLAREYCDIKKIKK-----KPVILSH--GMLPGLLEGQEKMSKSDENSAIFMDDSESD 265 (373)
T ss_dssp TTCSEE--CCBGGGHHHHHHHHHHHHHHTCSC-----CCEEEEB--CCCCCSSTTCCSCCSSSTTCCCBTTCCHHH
T ss_pred cCCcEE--EcchhhHHHHHHHHHHHHHhCCCC-----CceEEeC--CeeecCCCCCCCCcCCCCCCeeecCCCHHH
Confidence 467754 489999999999889999998742 2334454 457763 885 999999 478887643333
No 62
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=91.08 E-value=0.064 Score=56.21 Aligned_cols=70 Identities=13% Similarity=0.102 Sum_probs=44.7
Q ss_pred cCCCeEEEEEeCCccccHHHHHHHHHHcCCC-CCCCCCCCcEEEEe-eeeEEcCCC--ceeeeccCC---cccHHHHHHH
Q 007251 392 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWL-SADDSTYPKASHVG-FGLVLGEDG--KRLRTRFSE---VVRLVDLLDE 464 (611)
Q Consensus 392 ~~~d~iIyV~g~dq~~hf~~l~~~~~~lG~~-~~~~~~~~~~~Hv~-~g~V~~~dG--~kmSkR~G~---~v~l~dLlde 464 (611)
+++|.++ +|.||..|+..-..+++.+|.. .+ .-..+...|.. ..+|.+-+| +|||||.|| .|.|.|=-++
T Consensus 146 ~~a~~vp--vG~DQ~~~lel~Rdia~r~n~~yg~-~f~~P~~l~~~~~~~l~gL~g~~~KMSKS~~n~~~~I~L~D~~~~ 222 (348)
T 2yy5_A 146 YQPDIVP--VGNDQKQHLELTRDLAQRIQKKFKL-KLRLPQFVQNKDTNRIMDLFDPTKKMSKSSKNQNGVIYLDDPKEV 222 (348)
T ss_dssp TCCSEEE--CCGGGHHHHHHHHHHHHHHHHHHCC-CCCCCEEECCTTTTTCBCSSCTTSBCCSSCSCGGGCCBTTCCHHH
T ss_pred hCccEEE--ecccHHHHHHHHHHHHHHhhhhccc-ccCCCeeecccccccccCCCCcchhcCCCCCCCCceEeecCCHHH
Confidence 5777664 9999999999888888777410 00 00023333321 134556677 899999999 7887754333
No 63
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=91.07 E-value=0.077 Score=56.50 Aligned_cols=65 Identities=11% Similarity=-0.012 Sum_probs=42.8
Q ss_pred cCCCeEEEEEeCCccccHHHHHHHHHHcCC-----------CCCCCCCCCcEEEEeeeeEEcCCCceeeeccCCcccHHH
Q 007251 392 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGW-----------LSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVD 460 (611)
Q Consensus 392 ~~~d~iIyV~g~dq~~hf~~l~~~~~~lG~-----------~~~~~~~~~~~~Hv~~g~V~~~dG~kmSkR~G~~v~l~d 460 (611)
++++.+ ++|.||..|+..-..+++.++. .|.-....+...+. .++.+.||+|||||.||.|.|+|
T Consensus 231 ~~~~i~--~gG~DQ~~ni~~grdlarrfn~~~~~~~~~~~~~p~l~~~~~~~l~~--pll~~ldG~KMSKS~~naI~L~d 306 (392)
T 1y42_X 231 QGVQMQ--IGGSDQYGNIISGLEVVKAARESEPDPQERKYVTPKTALDECVGFTV--PLLTDSSGAKFGKSAGNAIWLDP 306 (392)
T ss_dssp HCEEEE--EECTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHSCCSGGGSCEEEEC--CCCBCTTCCBTTBCSSSBCBSST
T ss_pred CCccEE--ecCcchHhHHHHHHHHHHHHhhhccccccccccccccccCCcccccc--ccCcCCchhhccCCCCCeeeccC
Confidence 355544 5899999999987777766421 11000011223333 56888899999999999998875
No 64
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=90.97 E-value=0.11 Score=54.03 Aligned_cols=70 Identities=14% Similarity=0.075 Sum_probs=44.4
Q ss_pred cCCCeEEEEEeCCccccHHHHHHHHHHcCCC-CCCCCCCCcEEEE-eeeeEEcCCC--ceeeeccCC-c--ccHHHHHHH
Q 007251 392 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWL-SADDSTYPKASHV-GFGLVLGEDG--KRLRTRFSE-V--VRLVDLLDE 464 (611)
Q Consensus 392 ~~~d~iIyV~g~dq~~hf~~l~~~~~~lG~~-~~~~~~~~~~~Hv-~~g~V~~~dG--~kmSkR~G~-~--v~l~dLlde 464 (611)
+++|.++ +|.||..|+..-..+++.+|.. .+ .-..+...+. ...+|.+-+| +|||||.|| . |.|.|=-++
T Consensus 136 ~~~~~vp--vG~DQ~~~iel~Rdia~r~n~~yg~-~f~~P~~li~~~~~~l~gl~G~~~KMSKS~~n~~~~I~L~d~~~~ 212 (328)
T 1i6k_A 136 YNTDIVP--VGEDQKQHIELTRDLAERFNKRYGE-LFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKT 212 (328)
T ss_dssp TTCSEEE--CCGGGHHHHHHHHHHHHHHHHHHCS-CCCCCEEECCSSSSSCBCSSCTTSBCCTTCSCGGGCCBTTCCHHH
T ss_pred hCCCEEe--cccchHHHHHHHHHHHHHhCccccc-ccCCCeeeeccccccccCCCCCccCCCCCCCCcCceeeecCCHHH
Confidence 5777654 9999999999888888877620 00 0001222221 1234667778 899999999 6 877654444
No 65
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=90.89 E-value=0.21 Score=53.34 Aligned_cols=57 Identities=23% Similarity=0.242 Sum_probs=43.1
Q ss_pred EEeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEeeeeEEcCCC--ceeeecc-CCcccHHHHHHH
Q 007251 400 VTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDG--KRLRTRF-SEVVRLVDLLDE 464 (611)
Q Consensus 400 V~g~dq~~hf~~l~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~dG--~kmSkR~-G~~v~l~dLlde 464 (611)
.+|.||..|+..-..+++.+|+. .+...|.+ +|.+-+| +|||||. |+.|.|.|=-++
T Consensus 248 pvG~DQ~~~i~l~Rdla~r~~~~------~p~~l~~~--~l~gLdG~~~KMSKS~~~~~I~L~D~p~~ 307 (406)
T 3tze_A 248 PAAVDQDPFFRLARDKAKALGEK------KPSSIYVS--LLPDLKGVNRKMSASDPNSSIYLDDAQDT 307 (406)
T ss_dssp EEEGGGHHHHHHHHHHHHHHTCC------CCEEEEEC--CCCCTTSCCCCSSCSCGGGSCBTTCCHHH
T ss_pred eeccchHHHHHHHHHHHHHcCCC------CceeeccC--cccCCCCCCcCCCCCCCCCcccCCCCHHH
Confidence 47999999999888999999974 23344553 4777788 6999998 688887653333
No 66
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=90.49 E-value=0.1 Score=55.51 Aligned_cols=57 Identities=16% Similarity=0.193 Sum_probs=43.3
Q ss_pred EEeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEeeeeEEcCCC--ceeeeccCC-cccHHHHHHH
Q 007251 400 VTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDG--KRLRTRFSE-VVRLVDLLDE 464 (611)
Q Consensus 400 V~g~dq~~hf~~l~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~dG--~kmSkR~G~-~v~l~dLlde 464 (611)
.+|.||..|+..-..+++.+|+. .+...|. .+|.+-+| +|||||.+| .|.|.|=-++
T Consensus 212 pvG~DQ~~hl~l~Rdla~r~n~~------~p~~l~~--~~l~gLdG~~~KMSKS~~ns~I~L~D~p~~ 271 (392)
T 3jxe_A 212 PAAIDQDPYWRLQRDFAESLGYY------KTAALHS--KFVPSLTSLSGKMSASKPETAIYLTDSPED 271 (392)
T ss_dssp EEEGGGHHHHHHHHHHTGGGTSC------CCEEEEE--CCCCCSSCSSSCCCTTSGGGCCBTTCCHHH
T ss_pred ecccchHHHHHHHHHHHHHcCCC------CCeeeec--ccccCCCCCccccccCCCCCeeeCCCCHHH
Confidence 68999999999988999999973 2344554 45777777 599999998 8877654444
No 67
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=90.37 E-value=0.16 Score=53.12 Aligned_cols=63 Identities=11% Similarity=0.061 Sum_probs=45.7
Q ss_pred CCCeEEEEEeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEeeeeEEcC-CC-ceeeecc-CCcccHHHHHHHH
Q 007251 393 KAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGE-DG-KRLRTRF-SEVVRLVDLLDEA 465 (611)
Q Consensus 393 ~~d~iIyV~g~dq~~hf~~l~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~-dG-~kmSkR~-G~~v~l~dLldea 465 (611)
++|.++ +|.||..|+..-..+++.+|+.. +.+.|. .+|.+- +| +|||||. |+.|.|.|=-+++
T Consensus 186 ~~~~~~--~G~DQ~~~i~l~Rdia~r~~~~~------p~~~~~--~~l~gL~dg~~KMSKS~~~~~I~L~d~p~~i 251 (348)
T 2j5b_A 186 GIDICQ--LGIDQRKVNMLAIEYANDRGLKI------PISLSH--HMLMSLSGPKKKMSKSDPQGAIFMDDTEQEV 251 (348)
T ss_dssp CCSEEC--CBGGGHHHHHHHHHHHHHTTCCC------CEEEEB--CCCCCTTCSSCCCSTTCGGGSCBTTCCHHHH
T ss_pred CCcEEE--eccChHHHHHHHHHHHHHhCCCC------ceeecC--ccccCCCCcccccccCCCCCeEeecCCHHHH
Confidence 677554 79999999998889999998741 234444 456666 67 6999998 5889877544443
No 68
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=87.59 E-value=0.23 Score=52.55 Aligned_cols=69 Identities=16% Similarity=0.162 Sum_probs=46.0
Q ss_pred cCCCeEEEEEeCCccccHHHHHHHHHHcCCCCCC---CCCCCcEEEEeeeeEEcCCC------------------ceeee
Q 007251 392 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSAD---DSTYPKASHVGFGLVLGEDG------------------KRLRT 450 (611)
Q Consensus 392 ~~~d~iIyV~g~dq~~hf~~l~~~~~~lG~~~~~---~~~~~~~~Hv~~g~V~~~dG------------------~kmSk 450 (611)
+++|.+. +|.||..|+..-..+++.+|+.++. ....+...|. .+|.+-+| +||||
T Consensus 179 ~~~~~vp--~G~DQ~~~i~l~rdla~r~n~~~~~~~g~~~~~~~~~~--~~l~gL~g~~~~~~~~~~~~~~~~~~~KMSK 254 (375)
T 2cyc_A 179 QGVTIAH--AGMDQRKAHVIAIEVAQKLRYHPIVHEGEKLKPVAVHH--HLLLGLQEPPKWPIESEEEFKEIKAQMKMSK 254 (375)
T ss_dssp TTCSEEE--EEGGGHHHHHHHHHHGGGCSSSCEEETTEEECCEEEEE--CCCBCSSCCSSSSCCSHHHHHHHHHHHBGGG
T ss_pred hCCCeec--ccchHHHHHHHHHHHHHHhCCcccccccccCccEEecc--ccccCCCCcccccccchhhhhhhhhhhcccC
Confidence 4677654 8999999999888888888761000 0001233443 45777777 79999
Q ss_pred cc-CCcccHHHHHHH
Q 007251 451 RF-SEVVRLVDLLDE 464 (611)
Q Consensus 451 R~-G~~v~l~dLlde 464 (611)
|. |+.|.|.|=-++
T Consensus 255 S~~~~~I~L~d~p~~ 269 (375)
T 2cyc_A 255 SKPYSAVFIHDSPEE 269 (375)
T ss_dssp SCGGGSCBTTCCHHH
T ss_pred CCCCCeeccCCCHHH
Confidence 98 788887654333
No 69
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=87.37 E-value=0.23 Score=53.70 Aligned_cols=53 Identities=17% Similarity=0.188 Sum_probs=40.1
Q ss_pred EEeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEeeeeEEcCCCc--eeeeccCC-cccHHH
Q 007251 400 VTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGK--RLRTRFSE-VVRLVD 460 (611)
Q Consensus 400 V~g~dq~~hf~~l~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~dG~--kmSkR~G~-~v~l~d 460 (611)
-+|.||..|+.....+++.+|+. .+.+.|.+ ++.+-+|. |||||.|| .|.|.|
T Consensus 292 PvG~DQ~~hlel~Rdia~rfn~~------~p~~~~~~--~l~gLdG~~~KMSKS~~ns~I~l~D 347 (451)
T 3foc_A 292 ASGIEQDPYFRLARDLAPRMGHP------KNAYLLGK--FLPGLQGSGTKMSASDPNSAIYLTD 347 (451)
T ss_dssp EECTTTHHHHHHHHHHTTTTTSC------CCEEEEEC--CCCBTTBTTCCCCTTCGGGSCBTTC
T ss_pred eeecchHHHHHHHHHHHHHhCCC------CCeeecCC--cccCCCCCCCccCCCCCCCeeeecC
Confidence 46999999999888999999974 23355553 46667775 99999997 677654
No 70
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=82.47 E-value=0.47 Score=49.41 Aligned_cols=39 Identities=15% Similarity=0.191 Sum_probs=29.1
Q ss_pred ecCCCCCCCCcchhhhHHHHHHHHHHHHHHCC-CeEEEEeccCCc
Q 007251 190 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSN-VEVLRRNHVGDW 233 (611)
Q Consensus 190 ~~SpNp~kplHvGHlRsaiiGDsLariL~~~G-y~V~r~~yinD~ 233 (611)
|++--|||+|||||...++ -.+.++ ...| |+| ...|+||
T Consensus 5 y~G~~PTg~lHlGh~~g~l--~~~~~l-Q~~G~~~~--~~~IaD~ 44 (337)
T 2el7_A 5 LSGIQPSGEIHIGNYLGAI--KQWVAI-GEKLGRDA--FFCIVDY 44 (337)
T ss_dssp EEEECSCSCCBHHHHHTHH--HHHHHH-HHHHGGGE--EEEECGG
T ss_pred EEeeCCCCcccHHHHHHHH--HHHHHH-HhcCCCCE--EEEEeCc
Confidence 7888999999999998775 223333 4458 987 5678886
No 71
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=80.88 E-value=0.92 Score=47.24 Aligned_cols=39 Identities=26% Similarity=0.385 Sum_probs=29.5
Q ss_pred ecCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCc
Q 007251 190 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 233 (611)
Q Consensus 190 ~~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~ 233 (611)
|++.-|||.||+||...++. -.+-|...||+|.. .|+||
T Consensus 16 ~~G~~PTG~lHLGn~~g~l~---~~~~lQ~~G~~~~~--~IaD~ 54 (340)
T 2g36_A 16 LSGMRPTGKLHIGHLVGALE---NWVKLQEEGNECFY--FVADW 54 (340)
T ss_dssp EEEECCCSSCBHHHHHTHHH---HHHHHHHTTCEEEE--EECHH
T ss_pred EEeeCCCCcccHHhHHHHHH---HHHHHHHCCCCEEE--EEecc
Confidence 89999999999999987652 22335567998765 47886
No 72
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=77.82 E-value=0.46 Score=50.36 Aligned_cols=70 Identities=13% Similarity=0.094 Sum_probs=40.9
Q ss_pred cCCCeEEEEEeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEE-e-eeeEEcC-CC-ceeeecc---CCcccHHHHHHH
Q 007251 392 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHV-G-FGLVLGE-DG-KRLRTRF---SEVVRLVDLLDE 464 (611)
Q Consensus 392 ~~~d~iIyV~g~dq~~hf~~l~~~~~~lG~~~~~~~~~~~~~Hv-~-~g~V~~~-dG-~kmSkR~---G~~v~l~dLlde 464 (611)
+++|.+. +|.||..|+..-..+++.+|.... +.+..--..+ . -.+|.+- +| +|||||. ||.|.|.|=-++
T Consensus 170 ~~ad~vP--vG~DQ~~hleltRdia~rfn~~y~-~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~n~I~L~D~p~~ 246 (388)
T 3prh_A 170 YGTDLVP--PGEDQKQHLELTRNLAERFNKKYN-DIFTIPEVKIPKVGARIMSLNDPLKKMSKSDPNQKAYITLLDEPKQ 246 (388)
T ss_dssp TTCCEEC--CCSSCHHHHHHHHHHHHHHHHHTC-SCCCCCEECCCSCCCCCBCSSCTTSBCCTTCSSTTSCCBTTCCHHH
T ss_pred hCCCEEE--echhHHHHHHHHHHHHHHhCcccC-CCcccchhhhcccccccccCCCCCCccCCCCCCCCCeeecCCCHHH
Confidence 4677554 899999999998888988874210 0011000000 0 0122222 44 6999999 899987643333
No 73
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=76.32 E-value=1 Score=46.68 Aligned_cols=38 Identities=11% Similarity=0.184 Sum_probs=28.4
Q ss_pred ecCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCc
Q 007251 190 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 233 (611)
Q Consensus 190 ~~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~ 233 (611)
|++--|||.||+||...++ --+.++ .. ||++ .+.|+||
T Consensus 5 ysG~~PTG~lHlGn~vg~l--~~~~~l-Q~-g~~~--~~~IaD~ 42 (328)
T 1i6k_A 5 FSGIQPSGVITIGNYIGAL--RQFVEL-QH-EYNC--YFCIVDQ 42 (328)
T ss_dssp EEEECCCSCCBHHHHHHTH--HHHHHH-TT-TSEE--EEEECHH
T ss_pred EEeeCCCCcccHHHHHHHH--HHHHHH-Hc-CCcE--EEEEeCc
Confidence 7889999999999998877 222232 33 9987 5678886
No 74
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=75.27 E-value=0.68 Score=48.25 Aligned_cols=71 Identities=15% Similarity=0.144 Sum_probs=40.9
Q ss_pred cCCCeEEEEEeCCccccHHHHHHHHHHcC--CCCCCCCCC-Cc-EEEEeeeeEEcC-CC-ceeeecc---CCcccHHHHH
Q 007251 392 EKAEWIIYVTDVGQQLHFDMVFSAAKRAG--WLSADDSTY-PK-ASHVGFGLVLGE-DG-KRLRTRF---SEVVRLVDLL 462 (611)
Q Consensus 392 ~~~d~iIyV~g~dq~~hf~~l~~~~~~lG--~~~~~~~~~-~~-~~Hv~~g~V~~~-dG-~kmSkR~---G~~v~l~dLl 462 (611)
+++|.+ .+|.||..|+..-..+++.+| |..+.+.+. +. +.+-...+|.+- || +|||||. |+.|.|.|=-
T Consensus 142 ~~ad~v--pvG~DQ~~hlel~Rdia~rfn~~yg~~~~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~D~p 219 (341)
T 3sz3_A 142 YGAHQV--PVGSDQKQHLELARDIATRFNNIYSPEQPIFTIPEPYIPTVNARVMSLQDATKKMSKSDDNRKNVITLLEDP 219 (341)
T ss_dssp TTCSEE--CCCGGGHHHHHHHHHHHHHHHHHHCSSSCSSCCCEECCCSCCCCCEETTEEEEECCTTCSCGGGCCBTTCCH
T ss_pred cCCCEE--EeccchHHHHHHHHHHHHHhchhccCCCcccccChhhhccCcccccCCCCCCCccCCCCCCCCCeeecCCCH
Confidence 466755 489999999998888888776 210000011 11 111001233333 56 6999999 7899876433
Q ss_pred HH
Q 007251 463 DE 464 (611)
Q Consensus 463 de 464 (611)
++
T Consensus 220 ~~ 221 (341)
T 3sz3_A 220 KS 221 (341)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 75
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=74.46 E-value=1.1 Score=46.63 Aligned_cols=68 Identities=15% Similarity=0.124 Sum_probs=40.2
Q ss_pred cCCCeEEEEEeCCccccHHHHHHHHHHcC--CCCCCCCCC-Cc-EEEEeeeeEEcC-CC-ceeeeccC---CcccHHHHH
Q 007251 392 EKAEWIIYVTDVGQQLHFDMVFSAAKRAG--WLSADDSTY-PK-ASHVGFGLVLGE-DG-KRLRTRFS---EVVRLVDLL 462 (611)
Q Consensus 392 ~~~d~iIyV~g~dq~~hf~~l~~~~~~lG--~~~~~~~~~-~~-~~Hv~~g~V~~~-dG-~kmSkR~G---~~v~l~dLl 462 (611)
+++|.+. +|.||..|+..-..+++.+| |.+ .+. +. +.+-...+|.+- || +|||||.+ +.|.|.|=-
T Consensus 151 ~~ad~vp--vG~DQ~~hleltRdia~rfn~~yg~---~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~D~p 225 (346)
T 3n9i_A 151 YQTNQVP--VGEDQKQHLELSRDIASRFNNLYGD---IFKIPEPFIPKAGARVMSLQDPTKKMSKSDDNRNNVIELLEDP 225 (346)
T ss_dssp TTCSEEC--CCGGGHHHHHHHHHHHHHHHHHHSS---CSCCCEECCCCCCCCCBCSSCTTSBCCTTCSCGGGCCBTTSCH
T ss_pred hCceEEE--eccchHHHHHHHHHHHHHhccccCC---cccccchhccCCcccCccCCCCccccCCCCCCCCceecCCCCH
Confidence 4667554 89999999998888888877 210 010 11 111000123333 67 49999987 678775433
Q ss_pred HH
Q 007251 463 DE 464 (611)
Q Consensus 463 de 464 (611)
++
T Consensus 226 ~~ 227 (346)
T 3n9i_A 226 KS 227 (346)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 76
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=74.43 E-value=2.5 Score=44.64 Aligned_cols=44 Identities=23% Similarity=0.199 Sum_probs=30.9
Q ss_pred ceEEEEecCCCCCCCCcchhhhHHHHHHHHHHHHHH-CCCeEEEEeccCCch
Q 007251 184 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEF-SNVEVLRRNHVGDWG 234 (611)
Q Consensus 184 ~kV~Ve~~SpNp~kplHvGHlRsaiiGDsLariL~~-~Gy~V~r~~yinD~G 234 (611)
+++.| |++--|||+||+||.-.+. +.|.|.. .|..|... |+|+.
T Consensus 81 ~~~~v-ysG~~PTG~lHLGh~v~~~----~~~~lQ~~~g~~v~i~--I~D~~ 125 (386)
T 3hzr_A 81 KPTFI-FIQKYPQKEVALEEYITLE----FARYLQDAFNIQVIIQ--ILDDI 125 (386)
T ss_dssp CCEEE-EEEECCCSSCBGGGHHHHH----HHHHHHHHHCCEEEEE--ECHHH
T ss_pred CCeEE-EeccCCCCCccHHHHHHHH----HHHHHHHhcCCeEEEE--eCchH
Confidence 34555 8999999999999966552 2333444 48777766 88875
No 77
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=73.16 E-value=2.3 Score=44.68 Aligned_cols=38 Identities=11% Similarity=0.184 Sum_probs=27.1
Q ss_pred ecCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCc
Q 007251 190 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 233 (611)
Q Consensus 190 ~~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~ 233 (611)
|++--|||+||+|| ..++. .+.++ ...||+| ...|+||
T Consensus 39 y~G~~PTg~lHlG~-l~~l~--~~~~l-Q~~G~~~--~~~iaD~ 76 (364)
T 2cya_A 39 YIGYEPSGVAHIGW-LVWMY--KVKDL-VEAGVDF--SVLEATW 76 (364)
T ss_dssp EEEECCCSSCBTHH-HHHHH--HHHHH-HHTTCEE--EEEECHH
T ss_pred EeccCCCCCccHhH-HHHHH--HHHHH-HHCCCCE--EEEEeCc
Confidence 88899999999999 55443 33344 3469886 5567876
No 78
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=68.51 E-value=1.6 Score=45.51 Aligned_cols=37 Identities=19% Similarity=0.300 Sum_probs=27.5
Q ss_pred ecCCCCCCCCcchhhhHHHHHHHHHHH--HHHCCCeEEEEeccCCch
Q 007251 190 FSSPNIAKEMHVGHLRSTIIGDSLARM--LEFSNVEVLRRNHVGDWG 234 (611)
Q Consensus 190 ~~SpNp~kplHvGHlRsaiiGDsLari--L~~~Gy~V~r~~yinD~G 234 (611)
|++--|||+||+||...++ .++ |... |+| .+.|+||=
T Consensus 26 ysG~~PTG~lHLGn~~g~l-----~~~~~lQ~~-~~~--~~~IaD~h 64 (351)
T 1yi8_B 26 LTGDRPTGALHLGHLAGSL-----QNRVRLQDE-AEL--FVLLADVQ 64 (351)
T ss_dssp EEEECCSSCCBHHHHHHTH-----HHHHHHTSS-SEE--EEEECHHH
T ss_pred EEeeCCCCCccHHHHHHHH-----HHHHHHHHh-CCe--EEEEecch
Confidence 8999999999999988765 233 3333 776 56788873
No 79
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=67.07 E-value=1.6 Score=45.13 Aligned_cols=38 Identities=11% Similarity=0.284 Sum_probs=28.3
Q ss_pred ecCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCc
Q 007251 190 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 233 (611)
Q Consensus 190 ~~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~ 233 (611)
|++--|||.||+||.-+++.- +.++-+ ||++ .+.|+||
T Consensus 7 ysG~~PTg~lHlG~~lg~l~~--~~~lQ~--g~~~--~~~iaD~ 44 (322)
T 3tzl_A 7 LTGLQPSGDLHIGNYFGAIKQ--MVDAQE--KSQM--FMFIANY 44 (322)
T ss_dssp EEEECCSSCCBHHHHHHTHHH--HHHTTT--TSCC--EEEECHH
T ss_pred EEccCCCccccHHHHHHHHHH--HHHHhc--CCCE--EEEEecC
Confidence 788899999999998876643 444433 8887 4567887
No 80
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=64.92 E-value=4.6 Score=42.19 Aligned_cols=42 Identities=21% Similarity=0.402 Sum_probs=28.7
Q ss_pred EEEEecCCCCCCC-CcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCch
Q 007251 186 AVVDFSSPNIAKE-MHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWG 234 (611)
Q Consensus 186 V~Ve~~SpNp~kp-lHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~G 234 (611)
..| |++--|||+ |||||+- ++. .+.++- ..||+|. +.|+||=
T Consensus 47 ~~v-y~G~~PTg~sLHLGhl~-~l~--~~~~lQ-~~G~~~~--~lIaD~h 89 (356)
T 2pid_A 47 QTI-YCGFDPTADSLHVGHLL-ALL--GLFHLQ-RAGHNVI--ALVGGAT 89 (356)
T ss_dssp CEE-EEEECCSSSSCBHHHHH-HHH--HHHHHH-HTTCEEE--EEECTTG
T ss_pred CEE-EEeecCCCCcccHHHHH-HHH--HHHHHH-HCCCcEE--EEEccce
Confidence 444 999999998 9999943 443 244444 4698764 4677763
No 81
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=61.30 E-value=6.5 Score=41.97 Aligned_cols=38 Identities=24% Similarity=0.432 Sum_probs=26.8
Q ss_pred ecCCCCCCC-CcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCc
Q 007251 190 FSSPNIAKE-MHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 233 (611)
Q Consensus 190 ~~SpNp~kp-lHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~ 233 (611)
|++--|||+ |||||+= ++ -.+.+ |...||++.. .|+||
T Consensus 34 y~G~dPTg~sLHlGh~v-~l--~~l~~-lQ~~G~~~i~--lIgd~ 72 (419)
T 2ts1_A 34 YCGFDPTADSLHIGHLA-TI--LTMRR-FQQAGHRPIA--LVGGA 72 (419)
T ss_dssp EEEECCSSSSCBGGGHH-HH--HHHHH-HHHTTCEEEE--EECTT
T ss_pred EEeeCCCCCCccHHHHH-HH--HHHHH-HHHCCCcEEE--EEcCc
Confidence 999999999 9999965 22 23443 4456998754 56665
No 82
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=61.08 E-value=4.8 Score=42.59 Aligned_cols=41 Identities=17% Similarity=0.290 Sum_probs=29.0
Q ss_pred EEEEecCCCCCCCCcchhhhHHHHHHHHHHHHHH-CCCeEEEEeccCCc
Q 007251 186 AVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEF-SNVEVLRRNHVGDW 233 (611)
Q Consensus 186 V~Ve~~SpNp~kplHvGHlRsaiiGDsLariL~~-~Gy~V~r~~yinD~ 233 (611)
+.| |++--|||.||+||.-.++ +.|.|.. .|++|.. -|+||
T Consensus 74 ~~i-~sG~~PTG~lHLGh~v~~~----~~~~lQ~~~g~~~~i--~IaD~ 115 (392)
T 3jxe_A 74 FFL-YTGRGPSGPMHIGHIIPFF----ATKWLQEKFGVNLYI--QITDD 115 (392)
T ss_dssp CEE-EEEECCSSCCBHHHHHHHH----HHHHHHHHHCCEEEE--EECHH
T ss_pred eEE-EeccCCCCchhHHHHHHHH----HHHHHHHhcCCceEE--Eecch
Confidence 344 8899999999999987554 2344544 6887664 47776
No 83
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=60.65 E-value=6 Score=40.67 Aligned_cols=39 Identities=21% Similarity=0.342 Sum_probs=27.8
Q ss_pred ecCCCCCCC-CcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCch
Q 007251 190 FSSPNIAKE-MHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWG 234 (611)
Q Consensus 190 ~~SpNp~kp-lHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~G 234 (611)
|++--|||+ ||+||.= ++. .+.+ |...||++ .+.|+||=
T Consensus 37 y~G~~PTg~slHlGh~l-~l~--~~~~-lQ~~g~~~--~~~i~D~~ 76 (322)
T 2yxn_A 37 VCGFDPTADSLHLGHLV-PLL--CLKR-FQQAGHKP--VALVGGAT 76 (322)
T ss_dssp EEEECCSSSSCBHHHHH-HHH--HHHH-HHHTTCEE--EEEECTTG
T ss_pred EEeecCCCCcccHHHHH-HHH--HHHH-HHHcCCcE--EEEEccce
Confidence 999999999 9999965 322 2333 44569886 55678873
No 84
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=59.98 E-value=2.7 Score=43.83 Aligned_cols=38 Identities=18% Similarity=0.289 Sum_probs=27.9
Q ss_pred ecCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCc
Q 007251 190 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 233 (611)
Q Consensus 190 ~~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~ 233 (611)
|++--|||.||+||...++ --..+ |.. ||++ .+.|+||
T Consensus 8 ~sG~~PTG~lHLGn~vg~l--~~~~~-lQ~-~~~~--~~~IaD~ 45 (348)
T 2yy5_A 8 LTGIQASGKQHLGNYLGVM--QSLIE-LQE-QCQL--FVFVADL 45 (348)
T ss_dssp EEEECCCTTCBHHHHHHTG--GGHHH-HHH-HSEE--EEEECHH
T ss_pred EEeeCCCCcccHHHHHHHH--HHHHH-HHh-CCcE--EEEEcCh
Confidence 8999999999999988776 11222 444 7875 5678886
No 85
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=58.72 E-value=6.8 Score=41.82 Aligned_cols=38 Identities=18% Similarity=0.376 Sum_probs=26.7
Q ss_pred ecCCCCCCC-CcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCc
Q 007251 190 FSSPNIAKE-MHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 233 (611)
Q Consensus 190 ~~SpNp~kp-lHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~ 233 (611)
|++--|||+ |||||+= ++ -.+.+ |...||+|.. .|+||
T Consensus 36 y~G~dPTg~sLHlGh~v-~l--~~~~~-lQ~~G~~~~~--lIgd~ 74 (420)
T 1jil_A 36 YCGADPTADSLHIGHLL-PF--LTLRR-FQEHGHRPIV--LIGGG 74 (420)
T ss_dssp EEEECCSSSSCBHHHHH-HH--HHHHH-HHHTTCEEEE--EECTT
T ss_pred EEeeCCCCCCccHHHHH-HH--HHHHH-HHHCCCcEEE--EEcCc
Confidence 999999999 9999965 32 23444 4456998754 55665
No 86
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=58.31 E-value=6.5 Score=41.59 Aligned_cols=38 Identities=21% Similarity=0.421 Sum_probs=27.6
Q ss_pred ecCCCCCCC-CcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCc
Q 007251 190 FSSPNIAKE-MHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 233 (611)
Q Consensus 190 ~~SpNp~kp-lHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~ 233 (611)
||+--|||+ |||||+= ++. .+.++- ..||+|. ..|+||
T Consensus 68 y~G~dPTg~sLHlGhlv-~l~--~l~~lQ-~~G~~~~--~lIgD~ 106 (392)
T 1y42_X 68 YVGIDPTAPSLHVGHLL-PLM--PLFWMY-LEGYKAF--TLIGGS 106 (392)
T ss_dssp EEEECCCSSSCBGGGHH-HHH--HHHHHH-HHTCEEE--EEECTT
T ss_pred EEeecCCCCCccHHHHH-HHH--HHHHHH-HcCCcEE--EEEcCc
Confidence 999999999 9999976 332 344544 4599864 467776
No 87
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=56.05 E-value=8.2 Score=40.52 Aligned_cols=38 Identities=13% Similarity=0.406 Sum_probs=26.5
Q ss_pred ecCCCCCCCCcchhhhHHHHHHH-HHHHHHHCCCeEEEEeccCCc
Q 007251 190 FSSPNIAKEMHVGHLRSTIIGDS-LARMLEFSNVEVLRRNHVGDW 233 (611)
Q Consensus 190 ~~SpNp~kplHvGHlRsaiiGDs-LariL~~~Gy~V~r~~yinD~ 233 (611)
|++--|||.||+|| .++-.. +.+ |...|++|. +.|+||
T Consensus 60 y~G~~PTg~lHlG~---gvl~~~~~~~-lQ~~G~~~~--~lIaD~ 98 (373)
T 3vgj_A 60 YDGFEPSGRMHIAQ---GLLKSIIVNK-LTSNGCTFI--FWIADW 98 (373)
T ss_dssp EEEECCCSSCBHHH---HHHHHHHHHH-HHTTTCEEE--EEECHH
T ss_pred EeCCCCCCCceehh---hHHHHHHHHH-HHHCCCcEE--EEEecc
Confidence 89999999999999 233332 344 455688765 467776
No 88
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=55.11 E-value=10 Score=39.33 Aligned_cols=39 Identities=13% Similarity=0.261 Sum_probs=26.7
Q ss_pred ecCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCc
Q 007251 190 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 233 (611)
Q Consensus 190 ~~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~ 233 (611)
|++--|||.||+||.=.++ -.+.++- ..||+| ...|+||
T Consensus 44 y~G~~PTg~lHlGhyl~~l--~~~~~lQ-~~G~~~--~~~i~D~ 82 (348)
T 2j5b_A 44 YNGFEPSGRIHIAQALITV--MNTNNMI-ECGGQM--IIYIADW 82 (348)
T ss_dssp EEEECCCSSCBHHHHHHHH--HHHHHHH-HTTEEE--EEEECHH
T ss_pred EeccCCCCCCchhHHHHHH--HHHHHHH-HcCCcE--EEEeccc
Confidence 9999999999999932222 2344444 458775 4577886
No 89
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=54.30 E-value=3.8 Score=42.57 Aligned_cols=38 Identities=16% Similarity=0.284 Sum_probs=27.2
Q ss_pred ecCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCc
Q 007251 190 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 233 (611)
Q Consensus 190 ~~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~ 233 (611)
|++--|||+||+||.-+++ .-+..+-+ ||+| .+.|.||
T Consensus 10 ~sG~~PTG~lHLGhy~g~l--~~~~~lQ~--~~~~--~~~iaD~ 47 (341)
T 3sz3_A 10 LSGVQPSGELSIGNYLGAL--RQWQQMQD--DYDC--QYCVVDL 47 (341)
T ss_dssp EEEECSSSCCBHHHHHHTG--GGHHHHHH--HSEE--EEEECHH
T ss_pred EeCcCCCCcccHHHHHHHH--HHHHHHHh--cCeE--EEEEecc
Confidence 8899999999999987665 22333433 5765 4678887
No 90
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=53.88 E-value=9.9 Score=40.71 Aligned_cols=42 Identities=14% Similarity=0.237 Sum_probs=27.7
Q ss_pred ecCCCCCCC-CcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCchhHH
Q 007251 190 FSSPNIAKE-MHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQF 237 (611)
Q Consensus 190 ~~SpNp~kp-lHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~G~Q~ 237 (611)
|++--|||+ ||+||+= ++ -.+.++- ..||+| ...|+||=..+
T Consensus 41 y~G~dPTg~sLHlGh~v-~l--~~l~~lQ-~~G~~~--i~lIgD~ta~i 83 (432)
T 1h3f_A 41 KLGADPTRPDLHLGHAV-VL--RKMRQFQ-ELGHKV--VLIIGDFTGMI 83 (432)
T ss_dssp EEEECTTCCSCBHHHHH-HH--HHHHHHH-HTTCEE--EEEECCCC---
T ss_pred EEcccCCCCCCchhhHH-HH--HHHHHHH-HCCCCE--EEEEccceEEe
Confidence 899999997 9999965 22 3344443 469985 45688874333
No 91
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=50.92 E-value=11 Score=39.91 Aligned_cols=44 Identities=16% Similarity=0.184 Sum_probs=28.9
Q ss_pred ceEEEEecCCCCCC-CCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCc
Q 007251 184 KKAVVDFSSPNIAK-EMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 233 (611)
Q Consensus 184 ~kV~Ve~~SpNp~k-plHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~ 233 (611)
+++.| |++--||| .||+||+=.+ ..+.++-+..|..|.-. |+|+
T Consensus 77 ~~~~v-y~G~~PTg~~lHLGh~v~~---~~~~~lQ~~~~~~v~i~--I~D~ 121 (395)
T 3i05_A 77 QPFYL-YTGRGPSSESMHMGHLIPF---MFTKWLQDSFRVPLVIQ--MTDD 121 (395)
T ss_dssp CCEEE-EEEECCCSSCCBGGGSHHH---HHHHHHHHHHTCCEEEE--ECHH
T ss_pred CCeEE-EEeecCCCccchHHHHHHH---HHHHHHHHhcCCcEEEE--Ecch
Confidence 34555 99999999 6999997433 23444333347766664 7876
No 92
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=47.49 E-value=11 Score=39.70 Aligned_cols=44 Identities=16% Similarity=0.235 Sum_probs=29.1
Q ss_pred EEEEecCCCCC-CCCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCchh
Q 007251 186 AVVDFSSPNIA-KEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGT 235 (611)
Q Consensus 186 V~Ve~~SpNp~-kplHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~G~ 235 (611)
+.| |++--|| |.||+||+=.++ .+.++-+.-|..|.. -|+|++.
T Consensus 75 ~~v-y~G~~PTa~~lHlGh~v~~~---~~~~lQ~~~~~~v~i--~I~D~~~ 119 (393)
T 3hv0_A 75 FYL-YTGRGPSSESLHVGHLVPFL---FTKYLQDTFKVPLVI--QLTDDEK 119 (393)
T ss_dssp CEE-EEEECCSSSSCBSTTHHHHH---HHHHHHHHHCCCEEE--EECHHHH
T ss_pred eEE-EeCCCCCCCCccHHHHHHHH---HHHHHHHhcCCCeEe--eccChHH
Confidence 444 8999999 689999964444 244444443666554 6899863
No 93
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=47.19 E-value=6.5 Score=41.53 Aligned_cols=38 Identities=13% Similarity=0.156 Sum_probs=26.7
Q ss_pred ecCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCc
Q 007251 190 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 233 (611)
Q Consensus 190 ~~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~ 233 (611)
|++--|||+||+||.=+++- -.. -|. .||+| .+.|.||
T Consensus 39 ~sG~~PTG~lHLGhyvGal~--~~~-~LQ-~~~~~--~~~IaD~ 76 (388)
T 3prh_A 39 FSGIQPSGSVTLGNYIGAMK--QFV-ELQ-HDYNS--YFCIVDQ 76 (388)
T ss_dssp EEEECCCSCCBHHHHHHTHH--HHH-HTT-TTSEE--EEEECHH
T ss_pred EEeeCCCCcchHHHHHHHHH--HHH-HHH-ccCcE--EEEEecc
Confidence 89999999999999765543 111 222 38886 4577887
No 94
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=45.90 E-value=16 Score=39.04 Aligned_cols=40 Identities=18% Similarity=0.297 Sum_probs=27.6
Q ss_pred ecCCCCCCC-CcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCchh
Q 007251 190 FSSPNIAKE-MHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGT 235 (611)
Q Consensus 190 ~~SpNp~kp-lHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~G~ 235 (611)
|++--|||+ ||+||+- ++. .+.++- ..||++. +.|+||=.
T Consensus 36 y~G~dPTg~sLHLGhlv-~l~--~l~~lQ-~~G~~~i--~lIgD~ta 76 (432)
T 2jan_A 36 YAGFDPTAPSLHAGHLV-PLL--TLRRFQ-RAGHRPI--VLAGGATG 76 (432)
T ss_dssp EEEECCSSSSCBGGGHH-HHH--HHHHHH-HTTCEEE--EEECHHHH
T ss_pred EEeeCCCCCCcCHHHHH-HHH--HHHHHH-HCCCcEE--EEEcCcEE
Confidence 899999997 9999944 333 344444 5699865 45677633
No 95
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=45.70 E-value=17 Score=39.07 Aligned_cols=44 Identities=18% Similarity=0.237 Sum_probs=29.3
Q ss_pred ceEEEEecCCCCC-CCCcchhhhHHHHHHHHHHHHHHC-CCeEEEEeccCCch
Q 007251 184 KKAVVDFSSPNIA-KEMHVGHLRSTIIGDSLARMLEFS-NVEVLRRNHVGDWG 234 (611)
Q Consensus 184 ~kV~Ve~~SpNp~-kplHvGHlRsaiiGDsLariL~~~-Gy~V~r~~yinD~G 234 (611)
+++.| |++--|| |.|||||+=.++ .+.+ |... |..|.. -|+|+.
T Consensus 90 ~p~~v-ytG~dPTagsLHLGH~v~~~---~l~~-lQ~~~g~~v~I--~IgD~~ 135 (451)
T 3foc_A 90 HPIYI-YTGRGPSSGALHLGHLLPFI---FTKY-LQDAFKCYVVI--QITDDE 135 (451)
T ss_dssp CCEEE-EEEECCCSSCCBHHHHHHHH---HHHH-HHHHHTCEEEE--EECHHH
T ss_pred CCeEE-EecCCCCCCCccHHHHHHHH---HHHH-HHHccCceEEE--EeeCcH
Confidence 34555 9999999 899999954433 2333 4444 666655 488884
No 96
>1iio_A Conserved hypothetical protein MTH865; 4-helical bundle, monomer, structural genomics, unknown function; NMR {Methanothermobacterthermautotrophicus str} SCOP: a.39.4.1
Probab=45.25 E-value=4.3 Score=33.29 Aligned_cols=70 Identities=21% Similarity=0.234 Sum_probs=45.1
Q ss_pred HHhHHHHHHHHHHHHHHhc-CCCCCCCccccc-cc---CC--CCcccccchhHHHHHHhcCCCCCCCChHHHHHHHHHh
Q 007251 64 TGNVKRELEKVFDLALKAT-VPNETDVRPLIA-AC---TA--KFGDYQCNNAMGLWSKIKGKGTEFKGPQPVGQAIMKN 135 (611)
Q Consensus 64 ~~~~~~~~~~~i~~a~~~~-~~~~~~~~~~v~-~~---~~--~~GD~~~n~A~~lak~~k~~~~~~~~P~~iA~~l~~~ 135 (611)
++.++.+|.++|..+++.. +|.. ....++. .| .. +.||.+.. |+.+.|.++...-+.+++.++|..|+++
T Consensus 5 ~m~~~~ei~~qi~~a~~~a~FPI~-s~~EL~~AlP~G~~t~c~~Gd~~~t-a~El~kll~~~DFP~ksA~~lAd~iv~r 81 (84)
T 1iio_A 5 KMGVKEDIRGQIIGALAGADFPIN-SPEELMAALPNGPDTTCKSGDVELK-ASDAGQVLTADDFPFKSAEEVADTIVNK 81 (84)
T ss_dssp CCSHHHHHHHHHHHHHTTSSSTTB-HHHHHHHHCTTSSCCCCCBTTBCCC-TTTTGGGSCGGGSBCSHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHcCCCCCCC-CHHHHHHhCCCCCCCceeeCCEeee-HHHHHhhCCcccCCCCCHHHHHHHHHHH
Confidence 3466778888888887653 4421 1111221 23 22 45999776 7888888765555668999999998864
No 97
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=44.20 E-value=6.7 Score=40.80 Aligned_cols=37 Identities=14% Similarity=0.280 Sum_probs=25.9
Q ss_pred ecCCCCCCCCcchhhhHHHHHHHHHHHHH-HCCCeEEEEeccCCc
Q 007251 190 FSSPNIAKEMHVGHLRSTIIGDSLARMLE-FSNVEVLRRNHVGDW 233 (611)
Q Consensus 190 ~~SpNp~kplHvGHlRsaiiGDsLariL~-~~Gy~V~r~~yinD~ 233 (611)
|++--|||+||+||.=+++ .++.+ ..+|+| .+.|.||
T Consensus 19 ~sG~~PTG~lHLGh~vg~l-----~~~~~lQ~~~~~--~~~iaD~ 56 (346)
T 3n9i_A 19 FSGAQPSGELTIGNYMGAL-----RQWVQMQDDYDC--IYCIVDL 56 (346)
T ss_dssp EEEECSCSCCBHHHHHHTH-----HHHHTTTTTSEE--EEEECHH
T ss_pred EECcCCCCcccHHHHHHHH-----HHHHHHHhhCcE--EEEEecc
Confidence 8999999999999976554 33322 126765 4678887
No 98
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=43.30 E-value=19 Score=38.25 Aligned_cols=43 Identities=14% Similarity=0.351 Sum_probs=28.7
Q ss_pred ceEEEEecCCCCCC-CCcchhhhHHHHHHHHHHHHHHC-CCeEEEEeccCCc
Q 007251 184 KKAVVDFSSPNIAK-EMHVGHLRSTIIGDSLARMLEFS-NVEVLRRNHVGDW 233 (611)
Q Consensus 184 ~kV~Ve~~SpNp~k-plHvGHlRsaiiGDsLariL~~~-Gy~V~r~~yinD~ 233 (611)
+++.| |++--||| .||+||.=.++ +.|.|... |..|.. -|+|+
T Consensus 100 ~p~~v-y~G~~PTg~~lHLGh~v~~~----~~~~lQ~~~g~~~~i--~IaD~ 144 (406)
T 3tze_A 100 RPFYL-YTGRGPSSKTMHIGHTIPFL----LCKYMQDAFKIRLVI--QITDD 144 (406)
T ss_dssp CCEEE-EEEECCCSSCCBGGGHHHHH----HHHHHHHHHTCCEEE--EECHH
T ss_pred CCeEE-EEeeCCCCCcccHHHHHHHH----HHHHHHHhcCCcEEE--EeeCh
Confidence 34555 89999998 79999955432 33335544 777665 46776
No 99
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=43.06 E-value=20 Score=38.89 Aligned_cols=44 Identities=27% Similarity=0.360 Sum_probs=30.6
Q ss_pred ceEEEEecCCCCC-CCCcchhhhHHHHHHHHHHHHHH-CCCeEEEEeccCCch
Q 007251 184 KKAVVDFSSPNIA-KEMHVGHLRSTIIGDSLARMLEF-SNVEVLRRNHVGDWG 234 (611)
Q Consensus 184 ~kV~Ve~~SpNp~-kplHvGHlRsaiiGDsLariL~~-~Gy~V~r~~yinD~G 234 (611)
+++.| |++--|| |.|||||+=.++. .|.|.. .|+.|+. -|+||=
T Consensus 154 ~~~~v-y~G~dPTag~LHLGh~v~~~~----~~~lQ~~~g~~~ii--lI~D~~ 199 (477)
T 1r6t_A 154 KPFYL-YTGRGPSSEAMHVGHLIPFIF----TKWLQDVFNVPLVI--QMTDDE 199 (477)
T ss_dssp CCEEE-EEEECCCTTCCBGGGHHHHHH----HHHHHHHHTCCEEE--EECHHH
T ss_pred CCcEE-EEcccCCCCCccHHHHHHHHH----HHHHHHHhCCcEEE--EEecce
Confidence 34555 9999999 8999999876552 334554 7887654 467753
No 100
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=39.47 E-value=21 Score=38.14 Aligned_cols=42 Identities=17% Similarity=0.303 Sum_probs=28.4
Q ss_pred EEEEecCCCCC-CCCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCc
Q 007251 186 AVVDFSSPNIA-KEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 233 (611)
Q Consensus 186 V~Ve~~SpNp~-kplHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~ 233 (611)
+.| |++--|| |.|||||+=..+. +.++-+..|+.|+ ..|+||
T Consensus 103 ~~v-y~G~dPTag~LHLGh~v~~~~---l~~lQ~~~g~~~i--~lI~D~ 145 (432)
T 2ip1_A 103 FFL-YTGRGPSSDSMHLGHMIPFVF---TKWLQEVFDVPLV--IELTDD 145 (432)
T ss_dssp CEE-EEEECCCSSCCBGGGHHHHHH---HHHHHHHHTCCEE--EEECHH
T ss_pred eEE-EEeecCCCCCccHHHHHHHHH---HHHHHHHcCCeEE--EEEecc
Confidence 344 8999999 8999999775442 3343333788754 456775
No 101
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=39.45 E-value=23 Score=37.87 Aligned_cols=45 Identities=27% Similarity=0.352 Sum_probs=30.7
Q ss_pred ceEEEEecCCCCC-CCCcchhhhHHHHHHHHHHHHHH-CCCeEEEEeccCCchh
Q 007251 184 KKAVVDFSSPNIA-KEMHVGHLRSTIIGDSLARMLEF-SNVEVLRRNHVGDWGT 235 (611)
Q Consensus 184 ~kV~Ve~~SpNp~-kplHvGHlRsaiiGDsLariL~~-~Gy~V~r~~yinD~G~ 235 (611)
+++.| |++--|| |.|||||+=..+. .|.|.. .|+.|+. -|+||=.
T Consensus 107 ~~~~v-y~G~dPTag~LHLGh~v~~~~----~~~lQ~~~G~~~ii--lIgD~ta 153 (437)
T 1r6u_A 107 KPFYL-YTGRGPSSEAMHVGHLIPFIF----TKWLQDVFNVPLVI--QMTDDEK 153 (437)
T ss_dssp CCEEE-EEEECCCSSCCBHHHHHHHHH----HHHHHHHHTCCEEE--EECHHHH
T ss_pred CCcEE-EEcccCCCCCccHHHHHHHHH----HHHHHHHhCCcEEE--EEeccee
Confidence 34555 9999999 8999999875442 334544 7887654 5677543
No 102
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=36.46 E-value=18 Score=37.84 Aligned_cols=39 Identities=15% Similarity=0.260 Sum_probs=26.4
Q ss_pred ecCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCc
Q 007251 190 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 233 (611)
Q Consensus 190 ~~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~ 233 (611)
|++--|||.||+||.-.++. -+.++- ..||+|. ..|+||
T Consensus 37 y~G~~PTg~lHlG~yl~~l~--~~~~lQ-~~G~~~~--~~iaD~ 75 (375)
T 2cyc_A 37 YIGFEISGYIHLGTGLMAGA--KIADFQ-KAGIKTR--VFLADW 75 (375)
T ss_dssp EEEECCCSCCBHHHHHHHHH--HHHHHH-HTTCBCE--EEECHH
T ss_pred EeCCCCCCCcCchHHHHHHH--HHHHHH-HCCCcEE--EEecCc
Confidence 88999999999999433332 233333 4698764 567776
No 103
>2vo1_A CTP synthase 1; pyrimidine biosynthesis, glutamine amidotransferase, phosphorylation, amidotransferase, cytidine 5-prime triphos synthetase, UTP; 2.8A {Homo sapiens} SCOP: c.37.1.10 PDB: 3ihl_A*
Probab=27.19 E-value=46 Score=33.30 Aligned_cols=31 Identities=26% Similarity=0.313 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHHHHCCCeEEEE---eccC-Cchh
Q 007251 205 RSTIIGDSLARMLEFSNVEVLRR---NHVG-DWGT 235 (611)
Q Consensus 205 RsaiiGDsLariL~~~Gy~V~r~---~yin-D~G~ 235 (611)
--.|..-+|+++|+.+||+|+-. -|+| |.|+
T Consensus 37 GKGi~aaSlg~lLk~~G~~Vt~~K~DPYlNvD~GT 71 (295)
T 2vo1_A 37 GKGIIASSVGTILKSCGLHVTSIKIDPYINIDAGT 71 (295)
T ss_dssp SHHHHHHHHHHHHHHTTCCEEEEEEECSSCCC---
T ss_pred ccHHHHHHHHHHHHHCCCcceeeecccceecCCCC
Confidence 34677889999999999999975 4777 7776
No 104
>2c5m_A CTP synthase; cytidine 5-prime triphosphate synthetase, CTP synthetase, UTP, glutamine, amidotransferase, ligase, phosphorylation; 2.80A {Homo sapiens} PDB: 2vo1_A 3ihl_A*
Probab=26.75 E-value=32 Score=34.23 Aligned_cols=32 Identities=25% Similarity=0.333 Sum_probs=24.9
Q ss_pred hhHHHHHHHHHHHHHHCCCeEEEE---eccC-Cchh
Q 007251 204 LRSTIIGDSLARMLEFSNVEVLRR---NHVG-DWGT 235 (611)
Q Consensus 204 lRsaiiGDsLariL~~~Gy~V~r~---~yin-D~G~ 235 (611)
+--.|+.-+|.++|+.+||+|+-+ -|+| |.|+
T Consensus 36 lGKGi~aaSlG~LLk~rG~~Vt~~KiDPYlNvD~GT 71 (294)
T 2c5m_A 36 IGKGIIASSVGTILKSCGLHVTSIKIDPYINIDAGT 71 (294)
T ss_dssp SCHHHHHHHHHHHHHTTTCCEECCEEECBCCCCC--
T ss_pred cchHHHHHHHHHHHHHCCCeeEEEecCCceeecCCC
Confidence 345688899999999999999864 5887 8886
No 105
>2wh6_B BCL-2-like protein 11; mitochondrion, early protein, transmembrane, viral protein,; 1.50A {Homo sapiens} PDB: 2v6q_B 2nl9_B 3fdl_B 3io8_B 2vm6_B 3io9_B 3d7v_B 3kj1_B 3kz0_C 3kj2_B
Probab=23.08 E-value=55 Score=20.34 Aligned_cols=18 Identities=17% Similarity=0.493 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHhchhh
Q 007251 589 VVCEYLYNLSEYFTRFYS 606 (611)
Q Consensus 589 ~l~~yL~~La~~fn~fY~ 606 (611)
.+++-|..+.+.||.||-
T Consensus 7 ~iAqELRRIGDeFN~~y~ 24 (26)
T 2wh6_B 7 WIAQELRRIGDEFNAYYA 24 (26)
T ss_dssp HHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHhHHHhhhcc
Confidence 477888999999999983
No 106
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}
Probab=22.63 E-value=59 Score=35.58 Aligned_cols=32 Identities=19% Similarity=0.180 Sum_probs=26.2
Q ss_pred hhHHHHHHHHHHHHHHCCCeEEEE---eccC-Cchh
Q 007251 204 LRSTIIGDSLARMLEFSNVEVLRR---NHVG-DWGT 235 (611)
Q Consensus 204 lRsaiiGDsLariL~~~Gy~V~r~---~yin-D~G~ 235 (611)
+--.|+.-+|.++|+.+||+|+-+ -|+| |.|+
T Consensus 16 lgkgi~~as~g~ll~~~g~~v~~~k~dpylnvd~gt 51 (535)
T 3nva_A 16 VGKGTLVASIGMLLKRRGYNVTAVKIDPYINVDAGT 51 (535)
T ss_dssp TTHHHHHHHHHHHHHHTTCCEEEEEEECSSSSSSTT
T ss_pred cchHHHHHHHHHHHHHCCceEEEEecCcceeecCCC
Confidence 334678899999999999999975 5887 7776
No 107
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=21.59 E-value=1.1e+02 Score=27.78 Aligned_cols=35 Identities=9% Similarity=0.174 Sum_probs=27.3
Q ss_pred CCCCcchhhhHHHHHHHHHHHHHHCCCeEEEEecc
Q 007251 196 AKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHV 230 (611)
Q Consensus 196 ~kplHvGHlRsaiiGDsLariL~~~Gy~V~r~~yi 230 (611)
+.-++||++-..+--+.|..++...|..|..+..+
T Consensus 120 ~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~ 154 (198)
T 1qm9_A 120 SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFF 154 (198)
T ss_dssp CCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEES
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEE
Confidence 44588999888888889999999989766665543
No 108
>3r6u_A Choline-binding protein; substrate binding protein, ABC-transporter, extracellular, transport protein; 1.61A {Bacillus subtilis} SCOP: c.94.1.0 PDB: 3ppq_A 3ppo_A* 3ppp_A 3ppn_A 3ppr_A*
Probab=21.52 E-value=57 Score=32.53 Aligned_cols=41 Identities=20% Similarity=0.375 Sum_probs=32.3
Q ss_pred CCCcchhh---hHHHHHHHHHHHHHHC-CCeEEEEeccCCchhHH
Q 007251 197 KEMHVGHL---RSTIIGDSLARMLEFS-NVEVLRRNHVGDWGTQF 237 (611)
Q Consensus 197 kplHvGHl---RsaiiGDsLariL~~~-Gy~V~r~~yinD~G~Q~ 237 (611)
+++.||.. =+.|++..++.+|+.. ||+|.....+++....+
T Consensus 12 ~~I~ig~~~~te~~il~~i~~~~Le~~~G~~V~~~~~lg~~~~~~ 56 (284)
T 3r6u_A 12 QTIKIGAQSMSESEIIASMLGQLIEHHTDLKTTTIKNLGSNAVQQ 56 (284)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHHHHHSSCCEEEEEEECSHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHHHhcCCCCeEEEecCCchHHHH
Confidence 45556554 4789999999999988 99999998887755433
Done!