RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 007251
(611 letters)
>d1f7ua2 c.26.1.1 (A:136-483) Arginyl-tRNA synthetase (ArgRS)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 348
Score = 250 bits (640), Expect = 1e-78
Identities = 111/353 (31%), Positives = 176/353 (49%), Gaps = 24/353 (6%)
Query: 184 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEY 243
KK +++FSSPNIAK H GHLRSTIIG LA + E EV+R N++GDWG QFG+L
Sbjct: 8 KKVIIEFSSPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGLLAVG 67
Query: 244 LFEKFPNSEDANETAIGELQEFYRRSKNRFDSD-------PAFKERAQQAVVRLQSGEPK 296
FE++ N E + I L + Y R + + + +A++ R++ G+ +
Sbjct: 68 -FERYGNEEALVKDPIHHLFDVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDGDEE 126
Query: 297 YHEAWAQICEISRKEFDKVYKRLRVDLEEKGESFYNPY--IPGVIDELSKQGLVEESQGA 354
+ W + E S +++ Y RL + + + ID ++GL E +GA
Sbjct: 127 ALKIWKRFREFSIEKYIDTYARLNIKYDVYSGESQVSKESMLKAIDLFKEKGLTHEDKGA 186
Query: 355 RVIFIEGVNIPL---IIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDM 411
+I + N L I+ KSDG Y + D+ A R + + +IYV Q LH
Sbjct: 187 VLIDLTKFNKKLGKAIVQKSDGTTLYLTRDVGAAMDRYEKYHFDKMIYVIASQQDLHAAQ 246
Query: 412 VFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKA 471
F K+ G+ A D HV FG+V + + TR VV L ++L+E K +
Sbjct: 247 FFEILKQMGFEWAKDLQ-----HVNFGMV-----QGMSTRKGTVVFLDNILEETKEKMHE 296
Query: 472 VLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKG 524
V +++ ++K E E+ A+ VG A D++ R+ NY F +++ML+ +G
Sbjct: 297 V-MKKNENKYAQIEHPEEVADLVGISAVMIQDMQGKRINNYEFKWERMLSFEG 348
>d1iq0a2 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS)
{Thermus thermophilus [TaxId: 274]}
Length = 370
Score = 217 bits (553), Expect = 1e-65
Identities = 72/373 (19%), Positives = 151/373 (40%), Gaps = 46/373 (12%)
Query: 184 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEY 243
+V+ +S N KE+HVGHLR+ +GD++AR+L ++ EVL N++ D G Q +
Sbjct: 7 GVVLVEHTSVNPNKELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDTGRQAAETLFA 66
Query: 244 LFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQ 303
L + + D E Y R ++ + ++ + L+ GE +
Sbjct: 67 L-RHYGLTWDGKEKYDHFAGRAYVR-LHQDPEYERLQPAIEEVLHALERGELREEVNRIL 124
Query: 304 ICEISRKEFDKVYKRLRVDLEEKGESFYNPYIPGVIDELSKQGLVEESQGARVIFIEG-- 361
+ +++ L V + + ++++ E + A + ++
Sbjct: 125 LAQMATMHALNARYDLLVWESDIVRAGLLQKALALLEQSPHVFRPREGKYAGALVMDASP 184
Query: 362 -----VNIPLIIVKSDGGFNYASTDLAALWYRLNEEKA---------------------- 394
+ ++++S+G Y + D+A ++++ +
Sbjct: 185 VIPGLEDPFFVLLRSNGTATYYAKDIAFQFWKMGILEGLRFRPYENPYYPGLRTSAPEGE 244
Query: 395 ------EWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRL 448
E I V DV Q +V +A AG+ + + + H+ + VL E G+++
Sbjct: 245 AYTPKAEETINVVDVRQSHPQALVRAALALAGYPALAEKAH----HLAYETVLLE-GRQM 299
Query: 449 RTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNR 508
R V + ++L+EA R++A++ E+ D + E+ A V GA ++ +K
Sbjct: 300 SGRKGLAVSVDEVLEEATRRARAIVEEKNPD----HPDKEEAARMVALGAIRFSMVKTEP 355
Query: 509 LTNYTFSFDQMLN 521
F + + L+
Sbjct: 356 KKQIDFRYQEALS 368
>d1f7ua1 a.27.1.1 (A:484-607) Arginyl-tRNA synthetase (ArgRS)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 124
Score = 74.3 bits (182), Expect = 1e-16
Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 1/87 (1%)
Query: 525 NTAVYLLYAHARICSIIRKSGKDIEELKKTGSLVL-DHADERALGLHLLHFSEVIEEALT 583
+T YL YAH+R+ S+ R + +E L + L L + +V+ A+
Sbjct: 1 DTGPYLQYAHSRLRSVERNASGITQEKWINADFSLLKEPAAKLLIRLLGQYPDVLRNAIK 60
Query: 584 NLLPNVVCEYLYNLSEYFTRFYSNCQV 610
P V YL+ L+ + Y V
Sbjct: 61 THEPTTVVTYLFKLTHQVSSCYDVLWV 87
>d1iq0a1 a.27.1.1 (A:467-592) Arginyl-tRNA synthetase (ArgRS)
{Thermus thermophilus [TaxId: 274]}
Length = 126
Score = 72.4 bits (177), Expect = 6e-16
Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 524 GNTAVYLLYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALT 583
G+T Y+ YAHAR SI+RK+G+ L ERAL L LL F E + EA
Sbjct: 1 GDTGPYVQYAHARAHSILRKAGEWGAP-----DLSQATPYERALALDLLDFEEAVLEAAE 55
Query: 584 NLLPNVVCEYLYNLSEYFTRFYSNCQV 610
P+V+ +YL +L+ + +Y+ +
Sbjct: 56 ERTPHVLAQYLLDLAASWNAYYNAREN 82
>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 317
Score = 54.8 bits (130), Expect = 1e-08
Identities = 32/282 (11%), Positives = 69/282 (24%), Gaps = 3/282 (1%)
Query: 184 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEY 243
K+ V S + +HVG+ R + L EV + D+ +
Sbjct: 17 KEKYVVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVPRNV 76
Query: 244 LFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQ 303
E +++ E+ V L + E +++
Sbjct: 77 PQEWKDYLGMPISEVPDPWGCHESYAEHFMRKFEEEVEKLGIEVDLLYASELYKRGEYSE 136
Query: 304 ICEISRKEFDKVYKRLRVDLEEKGESFYNPYIPGVIDELSKQGLVEESQGARVIFIEGVN 363
++ ++ DK+ + L E + E++ V
Sbjct: 137 EIRLAFEKRDKIMEILNKYREI--AKQPPLPENWWPAMVYCPEHRREAEIIEWDGGWKVK 194
Query: 364 IPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLS 423
+ + + + G+ +
Sbjct: 195 YKCPEGHEGWVDIRSGNVKLRWRVDWPMRWSHFGVDFEPAGKDHLVAGSSYDTGKEIIKE 254
Query: 424 ADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEA 465
P + F + G+ GK + V+ L DL +
Sbjct: 255 VYGKEAPLSLMYEFVGIKGQKGK-MSGSKGNVILLSDLYEVL 295
>d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS)
{Escherichia coli [TaxId: 562]}
Length = 315
Score = 54.6 bits (130), Expect = 1e-08
Identities = 39/301 (12%), Positives = 77/301 (25%), Gaps = 27/301 (8%)
Query: 199 MHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETA 258
H+GH R+ + D +AR L F ++ ++ D + E F D
Sbjct: 36 CHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVAMVDRMI-- 93
Query: 259 IGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKR 318
E ++ P + RA E ++ K V
Sbjct: 94 ----AEMHKDFDALNILRPDMEPRATH----------HIAEIIELTEQLIAKGHAYVADN 139
Query: 319 LRVDLEEKGESFYNPYIPGVIDELSKQGLVEESQGAR---VIFIEGVNIPLIIVKSDGGF 375
V + + Y +D+L V+ R + ++
Sbjct: 140 GDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVDDKRNPMDFVLWKMSKEGEPSWPSPWG 199
Query: 376 NYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHV 435
++ + A+ Y H
Sbjct: 200 AGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFPHHENEIAQSTCAHDGQYVNYWM--HS 257
Query: 436 GFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRS-KAVLIER--GKDKEWTEEELEQTAE 492
G + D +++ + D+L + + L+ ++EE L+Q
Sbjct: 258 GM---VMVDREKMSKSLGNFFTVRDVLKYYDAETVRYFLMSGHYRSQLNYSEENLKQARA 314
Query: 493 A 493
A
Sbjct: 315 A 315
>d1iq0a3 d.67.2.1 (A:1-96) Arginyl-tRNA synthetase (ArgRS),
N-terminal 'additional' domain {Thermus thermophilus
[TaxId: 274]}
Length = 96
Score = 48.7 bits (116), Expect = 6e-08
Identities = 26/103 (25%), Positives = 40/103 (38%), Gaps = 12/103 (11%)
Query: 67 VKRELEKVFDLALKA-TVPNETDVRPLIAACTAKFGDYQCNNAMGLWSKIKGKGTEFKGP 125
++R LE+ ALK VP V A K GDY L +++ K P
Sbjct: 2 LRRALEEAIAQALKEMGVPVRLKVAR---APKDKPGDYGVP-LFALAKELR------KPP 51
Query: 126 QPVGQAIMKNLPPSEMIESCSVAGPGFVNVVLSKNWMAKNIQK 168
Q + Q + LP E +E G ++N L + + +
Sbjct: 52 QAIAQELKDRLPLPEFVEEAVPVGG-YLNFRLRTEALLREALR 93
>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS)
{Thermus thermophilus [TaxId: 274]}
Length = 348
Score = 44.3 bits (103), Expect = 3e-05
Identities = 23/151 (15%), Positives = 42/151 (27%), Gaps = 16/151 (10%)
Query: 184 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEY 243
K V + E H+GH +T++ D LAR + + G +
Sbjct: 3 KVFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTF---FLTGT-DEHGETVYR 58
Query: 244 LFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQ 303
+ ED F R + F +++ E ++ +
Sbjct: 59 AAQA--AGEDPKAFVDRVSGRFKRAWDLLGIAYDDF----------IRTTEERHKKVVQL 106
Query: 304 ICEISRKEFDKVYKRLRVDLEEKGESFYNPY 334
+ + + D Y E FY
Sbjct: 107 VLKKVYEAGDIYYGEYEGLYCVSCERFYTEK 137
>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase
(MetRS) {Escherichia coli [TaxId: 562]}
Length = 350
Score = 41.4 bits (96), Expect = 2e-04
Identities = 14/64 (21%), Positives = 22/64 (34%), Gaps = 4/64 (6%)
Query: 184 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEY 243
KK +V + P +H+GH+ I D R EV + G I
Sbjct: 2 KKILVTCALPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVN---FICAD-DAHGTPIML 57
Query: 244 LFEK 247
++
Sbjct: 58 KAQQ 61
>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS)
{Thermus thermophilus [TaxId: 274]}
Length = 425
Score = 40.3 bits (93), Expect = 5e-04
Identities = 16/92 (17%), Positives = 31/92 (33%), Gaps = 2/92 (2%)
Query: 184 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIE- 242
V+ PN+ +H+GH + D+L R E + G +++E
Sbjct: 34 PPFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDHAGIATQVVVER 93
Query: 243 -YLFEKFPNSEDANETAIGELQEFYRRSKNRF 273
L E + E + + ++ S
Sbjct: 94 LLLKEGKTRHDLGREKFLERVWQWKEESGGTI 125
>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase
(IleRS) {Thermus thermophilus [TaxId: 274]}
Length = 452
Score = 38.0 bits (87), Expect = 0.003
Identities = 24/177 (13%), Positives = 47/177 (26%), Gaps = 20/177 (11%)
Query: 159 KNWMAKNIQKMLVDGIETWAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLE 218
W + I + V+ + + V P HVGH ++ D R
Sbjct: 19 AFWKREKIFQKSVE------NRKGGPRYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKT 72
Query: 219 FSNVEVLRRNHVGDWGTQ-FGMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDP 277
RR G G+ +E EK + E + + N+ +
Sbjct: 73 MRGYYAPRR-----AGWDTHGLPVELEVEKKLGLKSKREI-----EAYGIERFNQACRES 122
Query: 278 AFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGESFYNPY 334
F + + Y + + +L ++G + +
Sbjct: 123 VFTYEKEW---EAFTERIAYWVDLEDAYATLEPTYIESIWWSLKNLFDRGLLYRDHK 176
>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase
(IleRS) {Staphylococcus aureus [TaxId: 1280]}
Length = 450
Score = 37.6 bits (86), Expect = 0.004
Identities = 13/89 (14%), Positives = 27/89 (30%), Gaps = 10/89 (11%)
Query: 159 KNWMAKNIQKMLVDGIETWAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLE 218
+ W A++ ++ + ++ P +H+GH + I+ D + R
Sbjct: 29 EKWDAEDQYHKALE------KNKGNETFILHDGPPYANGNLHMGHALNKILKDFIVRYKT 82
Query: 219 FSNVEVLRRNHVGDWGTQFGMLIEYLFEK 247
G+ IE K
Sbjct: 83 MQGFYAPYVP----GWDTHGLPIEQALTK 107
>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS)
{Thermus thermophilus [TaxId: 274]}
Length = 494
Score = 36.5 bits (83), Expect = 0.010
Identities = 27/95 (28%), Positives = 40/95 (42%), Gaps = 7/95 (7%)
Query: 184 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQ-FGMLIE 242
K V P + ++H+GHL++ +GD LAR EVL G FG+ E
Sbjct: 33 GKQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHP-----MGWDAFGLPAE 87
Query: 243 YLFEKF-PNSEDANETAIGELQEFYRRSKNRFDSD 276
KF + +D I + +E R +D D
Sbjct: 88 NAALKFGVHPKDWTYANIRQAKESLRLMGILYDWD 122
>d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase
(MetRS) {Pyrococcus abyssi [TaxId: 29292]}
Length = 361
Score = 35.8 bits (81), Expect = 0.012
Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 5/65 (7%)
Query: 184 KKAVVDFSSPNIAKEMHVGHLR-STIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIE 242
+ +V + P +H GHL + + D R L +V+ + + G I
Sbjct: 2 VRYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVV---FICGT-DEHGTPIS 57
Query: 243 YLFEK 247
+ K
Sbjct: 58 FRALK 62
>d2oeea1 a.281.1.2 (A:3-112) Hypothetical protein YheA {Bacillus
subtilis [TaxId: 1423]}
Length = 110
Score = 28.9 bits (65), Expect = 0.54
Identities = 10/70 (14%), Positives = 25/70 (35%), Gaps = 11/70 (15%)
Query: 252 EDANE--TAIGELQEF--YRRSKNRFDSDPA-------FKERAQQAVVRLQSGEPKYHEA 300
+ A + A+ +EF + + ++D + F++ + + +GE E
Sbjct: 5 DVAYDLENALRGSEEFTRLKNLYDEVNADESAKRMFENFRDVQLRLQQKQMAGEEITQEE 64
Query: 301 WAQICEISRK 310
Q +
Sbjct: 65 VTQAQKTVAL 74
>d2iaza1 a.281.1.2 (A:1-111) Hypothetical protein SP1372
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 111
Score = 28.1 bits (63), Expect = 1.2
Identities = 10/70 (14%), Positives = 26/70 (37%), Gaps = 11/70 (15%)
Query: 252 EDANE--TAIGELQEF--YRRSKNRFDSDPA-------FKERAQQAVVRLQSGEPKYHEA 300
+ ANE + L E+ + +K+ +D + ++ Q+G+
Sbjct: 6 DSANELSRGLRGLPEYKAVKAAKDAIAADAEASKIFTDYLAFQEEIQKLAQTGQMPDASF 65
Query: 301 WAQICEISRK 310
A++ ++
Sbjct: 66 QAKMEGFGKQ 75
>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 252
Score = 29.2 bits (65), Expect = 1.4
Identities = 14/73 (19%), Positives = 29/73 (39%), Gaps = 9/73 (12%)
Query: 38 RATTRRLALAATKTRSITSMATEEENTGNVKRELEKVFDLALKATVPNETDVRPLIAACT 97
+ RL+ A + + ++++ ELE + + +E + LI A T
Sbjct: 14 MGSALRLSEAGHTV-ACHDESFKQKD------ELEAFAETYPQLKPMSEQEPAELIEAVT 66
Query: 98 AKFG--DYQCNNA 108
+ +G D +N
Sbjct: 67 SAYGQVDVLVSND 79
>d1rypl_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 212
Score = 28.6 bits (63), Expect = 2.0
Identities = 9/36 (25%), Positives = 20/36 (55%)
Query: 361 GVNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEW 396
G ++ L V DG + + D+ L++++ EE+ +
Sbjct: 172 GGSVNLYHVTEDGWIYHGNHDVGELFWKVKEEEGSF 207
>d1vola2 a.74.1.2 (A:208-316) Transcription factor IIB (TFIIB), core
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 109
Score = 27.1 bits (60), Expect = 2.6
Identities = 11/106 (10%), Positives = 31/106 (29%), Gaps = 13/106 (12%)
Query: 244 LFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVV-------RLQSGEPK 296
+F ++ + R++ R+ +V S E +
Sbjct: 7 FMSRFCSNLCLPKQVQMAATHIARKAVEL----DLVPGRSPISVAAAAIYMASQASAEKR 62
Query: 297 YHEAWAQICEISRKEFDKVYKRLRVDLEEKGESFYNPYIPGVIDEL 342
+ I ++ + Y+ + + + + P +D+L
Sbjct: 63 TQKEIGDIAGVADVTIRQSYRLIYPRAPDLFPTDFKFDTP--VDKL 106
>d1qrjb1 a.28.3.1 (B:131-214) HTLV-I capsid protein {Human T-cell
leukemia virus type 1 [TaxId: 11908]}
Length = 84
Score = 26.2 bits (58), Expect = 2.9
Identities = 6/33 (18%), Positives = 13/33 (39%), Gaps = 5/33 (15%)
Query: 130 QAIMKNLPPS-----EMIESCSVAGPGFVNVVL 157
Q +++ + +M+ +C P VL
Sbjct: 52 QKLLQARGHTNSPLGDMLRACQTWTPKDKTKVL 84
>d2hxja1 a.136.1.1 (A:3-118) Hypothetical protein NMB1681 {Neisseria
meningitidis [TaxId: 487]}
Length = 116
Score = 26.3 bits (58), Expect = 4.5
Identities = 11/66 (16%), Positives = 24/66 (36%), Gaps = 7/66 (10%)
Query: 235 TQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGE 294
Q M+ ++++ K+ + A+G Q+ P + V+
Sbjct: 20 KQTEMIADHIYGKYDVFKRFKPLALGIDQDLIAA-------LPQYDAALIARVLANHCRR 72
Query: 295 PKYHEA 300
P+Y +A
Sbjct: 73 PRYLKA 78
>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}
Length = 168
Score = 27.0 bits (59), Expect = 4.6
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 209 IGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIE 242
IG + R+L VEV N + D T +L
Sbjct: 11 IGRQVFRILHSRGVEVALINDLTDNKTLAHLLKY 44
>d1jjcb2 a.6.1.1 (B:400-474) Domains B1 and B5 of PheRS-beta, PheT
{Thermus thermophilus [TaxId: 274]}
Length = 75
Score = 25.6 bits (56), Expect = 5.7
Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 6/62 (9%)
Query: 306 EISRKEFDKVYKRLRVDLEEKGESFYNPYIPGVIDELSKQGLVEESQGARVIFIEGV-NI 364
E + KRL +E +G ++ +D ++ LVEE V I+G I
Sbjct: 19 SYPEAEQIAILKRLGCRVEGEGPTYRVTPPSHRLDLRLEEDLVEE-----VARIQGYETI 73
Query: 365 PL 366
PL
Sbjct: 74 PL 75
>d3bz6a1 a.4.5.75 (A:13-96) Hypothetical protein PSPTO2686
{Pseudomonas syringae pv. tomato [TaxId: 323]}
Length = 84
Score = 25.4 bits (56), Expect = 6.0
Identities = 5/19 (26%), Positives = 8/19 (42%)
Query: 338 VIDELSKQGLVEESQGARV 356
+ L +GL G+R
Sbjct: 60 SLRALEGRGLTRLVMGSRA 78
>d1mija_ a.4.1.1 (A:) Homeo-prospero domain of Prospero protein
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 152
Score = 26.7 bits (59), Expect = 6.2
Identities = 9/36 (25%), Positives = 21/36 (58%)
Query: 262 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKY 297
L+EF+R + D++ ++K+ + + R+ P+Y
Sbjct: 113 LREFFRAIQGGKDTEQSWKKSIYKIISRMDDPVPEY 148
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.390
Gapped
Lambda K H
0.267 0.0686 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,295,631
Number of extensions: 110437
Number of successful extensions: 363
Number of sequences better than 10.0: 1
Number of HSP's gapped: 355
Number of HSP's successfully gapped: 27
Length of query: 611
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 520
Effective length of database: 1,158,166
Effective search space: 602246320
Effective search space used: 602246320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.4 bits)