BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007252
(611 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OGK|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|D Chain D, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|F Chain F, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|H Chain H, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|J Chain J, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|L Chain L, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|N Chain N, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|P Chain P, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGL|B Chain B, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|D Chain D, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|F Chain F, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|H Chain H, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|J Chain J, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|L Chain L, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|N Chain N, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|P Chain P, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGM|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|D Chain D, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|F Chain F, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|H Chain H, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|J Chain J, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|L Chain L, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|N Chain N, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|P Chain P, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
Length = 592
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 86/351 (24%), Positives = 151/351 (43%), Gaps = 68/351 (19%)
Query: 251 LKTIFVSRCKFVSSTGLISVI---RGHSGLLQLDAGHCFSELSTTLLH----HMRDLKNL 303
L+T+ + +C ++ GL+S++ R LL ++ FSE LH H L+ L
Sbjct: 140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESS--FSEKDGKWLHELAQHNTSLEVL 197
Query: 304 EAITMDGARISDSCFQTISFNCKSLVE-----------IGLSK--------CLGVTNTDS 344
+ A+IS +TI+ NC+SLV +G K C G N D
Sbjct: 198 NFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNED- 256
Query: 345 CRGLVCLKIESCNMITEKGLYQLG-------------SFCLRLEEIDLTDCNGVNDKGLE 391
+ + + N++ + L +LG F ++ ++DL +
Sbjct: 257 ----IGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCT 312
Query: 392 YLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCS---GIGDD-------GL 441
+ +C L L+ I D+GL +A C +++ L + + + G+ D+ GL
Sbjct: 313 LIQKCPNLEVLETR--NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGL 370
Query: 442 AALSNGCKKLKKLNLSYCVNVTDRGMEHI-RFIEDLSDLELRGL---TKIT----SAGLT 493
AL+ GC++L+ + + Y ++T+ +E I ++++L D L L +IT G+
Sbjct: 371 IALAQGCQELEYMAV-YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVR 429
Query: 494 ALAAGCKRLADLDLK-HCAKIDDSGFWALAYYSQNLRQINLSYCALSDMAL 543
+L GCK+L + D G + YS N+R + L Y SD L
Sbjct: 430 SLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGL 480
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 109/514 (21%), Positives = 197/514 (38%), Gaps = 76/514 (14%)
Query: 12 EDLLVRVREKIGDELDSKTWRLVCKEFSRVDSVTR--TTLRVLRVEFLFILLDKYPYIKT 69
+D++ +V I D D + LVC+ + ++DS TR T+ + L ++P +++
Sbjct: 18 DDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALCYTATPDRLSRRFPNLRS 77
Query: 70 LDLSVCPRVNDGTVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDL 129
L L PR + + + + +W + + S LR R ++ +DL
Sbjct: 78 LKLKGKPR------AAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRM--IVSDLDL 129
Query: 130 SYCCGFGDREAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSL--------- 180
DR A A A L+ +KLDKC T GL I C ++ L +
Sbjct: 130 -------DRLAKAR--ADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKD 180
Query: 181 -KWCMEISDLGIXXXXXXXXXXXXXXVSYLKLTN-----DSFCSIATLAKLESLVMVGCP 234
KW E++ +S L S S+ + E L +VG
Sbjct: 181 GKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVK-VGDFEILELVGFF 239
Query: 235 CVDDTGLRF------LESGCP--LLKTIFVSR-CK----FVSSTGLISVIRGHSGLLQLD 281
F + G P + +F + C+ ++ + + + + +LD
Sbjct: 240 KAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLD 299
Query: 282 AGHCFSELST--TLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGV 339
+ E TL+ +L+ LE + I D + ++ CK L + + +
Sbjct: 300 LLYALLETEDHCTLIQKCPNLEVLETRNV----IGDRGLEVLAQYCKQLKRLRIERGADE 355
Query: 340 TNTDSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLE----YLSR 395
+ GLV +++GL L C LE + + + + ++ LE YL
Sbjct: 356 QGMEDEEGLV----------SQRGLIALAQGCQELEYMAVY-VSDITNESLESIGTYLKN 404
Query: 396 CSELLFLKLGLCENIS----DKGLFYIASNCLRIQGLDLY-KCSGIGDDGLAALSNGCKK 450
+ + L E I+ D G+ + C +++ Y + G+ D GL+ +
Sbjct: 405 LCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPN 464
Query: 451 LKKLNLSYCVNVTDRG-MEHIRFIEDLSDLELRG 483
++ + L Y V +D G ME R +L LE+RG
Sbjct: 465 VRWMLLGY-VGESDEGLMEFSRGCPNLQKLEMRG 497
>pdb|1FS2|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FS2|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
Length = 272
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 98/191 (51%), Gaps = 25/191 (13%)
Query: 358 MITEKGLYQ-LGSFCLRLEEIDLTDCNGVNDKGLEY--LSRCSELLFLKL-GLCENISDK 413
+ +++ L+Q L F R++ +DL+ N V + + LS+CS+L L L GL +SD
Sbjct: 42 LASDESLWQTLDEF--RVQHMDLS--NSVIEVSTLHGILSQCSKLQNLSLEGL--RLSDP 95
Query: 414 GLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKKLKKLNLSYCVNVTDRGME----H 469
+ +A N ++ L+L CSG + L L + C +L +LNLS+C + T++ ++ H
Sbjct: 96 IVNTLAKNSNLVR-LNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAH 154
Query: 470 IRFIEDLSDLELRGLTK-ITSAGLTALAAGCKRLADLDLKHCAKIDD---SGFWALAYYS 525
+ E ++ L L G K + + L+ L C L LDL + + F+ L Y
Sbjct: 155 VS--ETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNY-- 210
Query: 526 QNLRQINLSYC 536
L+ ++LS C
Sbjct: 211 --LQHLSLSRC 219
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 87/211 (41%), Gaps = 30/211 (14%)
Query: 303 LEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTDSCRGLVCLKIESCNMITEK 362
L+ ++++G R+SD T++ N +LV + LS C G +E
Sbjct: 82 LQNLSLEGLRLSDPIVNTLAKN-SNLVRLNLSGCSG--------------------FSEF 120
Query: 363 GLYQLGSFCLRLEEIDLTDCNGVNDKGLEY-LSRCSELLF-LKL-GLCENISDKGLFYIA 419
L L S C RL+E++L+ C +K ++ ++ SE + L L G +N+ L +
Sbjct: 121 ALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLV 180
Query: 420 SNCLRIQGLDLYKCSGIGDDGLAALSNGCKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDL 479
C + LDL + +D L+ L+LS C ++ + + I L L
Sbjct: 181 RRCPNLVHLDLSDSVMLKNDCFQEFFQ-LNYLQHLSLSRCYDIIPETLLELGEIPTLKTL 239
Query: 480 ELRGLT-----KITSAGLTALAAGCKRLADL 505
++ G+ ++ L L C +
Sbjct: 240 QVFGIVPDGTLQLLKEALPHLQINCSHFTTI 270
>pdb|1FQV|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|E Chain E, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|G Chain G, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|I Chain I, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|K Chain K, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|M Chain M, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|O Chain O, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|2ASS|B Chain B, Crystal Structure Of The Skp1-Skp2-Cks1 Complex
pdb|2AST|B Chain B, Crystal Structure Of Skp1-Skp2-Cks1 In Complex With A P27
Peptide
Length = 336
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 89/176 (50%), Gaps = 22/176 (12%)
Query: 372 LRLEEIDLTDCNGVNDKGLEY--LSRCSELLFLKL-GLCENISDKGLFYIASNCLRIQGL 428
R++ +DL+ N V + + LS+CS+L L L GL +SD + +A N ++ L
Sbjct: 93 FRVQHMDLS--NSVIEVSTLHGILSQCSKLQNLSLEGL--RLSDPIVNTLAKNSNLVR-L 147
Query: 429 DLYKCSGIGDDGLAALSNGCKKLKKLNLSYCVNVTDRGME----HIRFIEDLSDLELRGL 484
+L CSG + L L + C +L +LNLS+C + T++ ++ H+ E ++ L L G
Sbjct: 148 NLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVS--ETITQLNLSGY 205
Query: 485 TK-ITSAGLTALAAGCKRLADLDLKHCAKIDD---SGFWALAYYSQNLRQINLSYC 536
K + + L+ L C L LDL + + F+ L Y L+ ++LS C
Sbjct: 206 RKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNY----LQHLSLSRC 257
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 49/227 (21%), Positives = 90/227 (39%), Gaps = 30/227 (13%)
Query: 303 LEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTDSCRGLVCLKIESCNMITEK 362
L+ ++++G R+SD T++ N +LV + LS C G +E
Sbjct: 120 LQNLSLEGLRLSDPIVNTLAKN-SNLVRLNLSGCSG--------------------FSEF 158
Query: 363 GLYQLGSFCLRLEEIDLTDCNGVNDKGLEY-LSRCSELLF-LKL-GLCENISDKGLFYIA 419
L L S C RL+E++L+ C +K ++ ++ SE + L L G +N+ L +
Sbjct: 159 ALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLV 218
Query: 420 SNCLRIQGLDLYKCSGIGDDGLAALSNGCKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDL 479
C + LDL + +D L+ L+LS C ++ + + I L L
Sbjct: 219 RRCPNLVHLDLSDSVMLKNDCFQEFFQ-LNYLQHLSLSRCYDIIPETLLELGEIPTLKTL 277
Query: 480 ELRGLT-----KITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWAL 521
++ G+ ++ L L C + + W +
Sbjct: 278 QVFGIVPDGTLQLLKEALPHLQINCSHFTTIARPTIGNKKNQEIWGI 324
>pdb|2P1M|B Chain B, Tir1-ask1 Complex Structure
pdb|2P1N|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1N|E Chain E, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1O|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1P|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1Q|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|3C6N|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
pdb|3C6O|B Chain B, Small Molecule Agonists And Antagonists Of F-Box
Protein-Substrate Interactions In Auxin Perception And
Signaling
pdb|3C6P|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
Length = 594
Score = 35.8 bits (81), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 65/126 (51%), Gaps = 7/126 (5%)
Query: 441 LAALSNGCKKLKKLNLSYCVNVTDRGMEHI-RFIEDLSDLELRGLTKITSAGLTALAAGC 499
+ A+S+ L+++ L V VTD +E I + ++ L L ++ GL A+AA C
Sbjct: 97 IEAMSSSYTWLEEIRLKRMV-VTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATC 155
Query: 500 KRLADLDLKHCAKIDDSGFWALAYYSQ---NLRQINLSYCALSDMALCMVMGNMTRLQDA 556
+ L +LDL+ D SG W L+++ +L +N+S C S+++ + +TR +
Sbjct: 156 RNLKELDLRESDVDDVSGHW-LSHFPDTYTSLVSLNIS-CLASEVSFSALERLVTRCPNL 213
Query: 557 KLVHLT 562
K + L
Sbjct: 214 KSLKLN 219
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 73/307 (23%), Positives = 119/307 (38%), Gaps = 68/307 (22%)
Query: 303 LEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTDSCRGLVCLKIESCNMITEK 362
LE I + ++D C + I+ + K+ + LS C G + TD
Sbjct: 107 LEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFS-TD------------------- 146
Query: 363 GLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNC 422
GL + + C L+E+DL + + V+D +LS + + L NIS C
Sbjct: 147 GLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSL--NIS----------C 193
Query: 423 LRIQGLDLYKCSGIGDDGLAALSNGCKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELR 482
L S + L L C LK L L+ V + ++ ++ L +L
Sbjct: 194 L---------ASEVSFSALERLVTRCPNLKSLKLNRAVPL-EKLATLLQRAPQLEELGTG 243
Query: 483 GLT----KITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWAL------AYYS--QNLRQ 530
G T +GL+ +GCK L L SGFW A YS L
Sbjct: 244 GYTAEVRPDVYSGLSVALSGCKELRCL----------SGFWDAVPAYLPAVYSVCSRLTT 293
Query: 531 INLSYCALSDMALCMVMGNMTRLQDAKLVHLTNCTREGFELALRSCCMRIKKVKLLAPIR 590
+NLSY + L ++ +LQ +L L G E+ L S C ++++++
Sbjct: 294 LNLSYATVQSYDLVKLLCQCPKLQ--RLWVLDYIEDAGLEV-LASTCKDLRELRVFPSEP 350
Query: 591 FLLSSEI 597
F++ +
Sbjct: 351 FVMEPNV 357
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 119/573 (20%), Positives = 220/573 (38%), Gaps = 86/573 (15%)
Query: 10 LTEDLLVRVREKIGDELDSKTWRLVCKEFSRVDSVTRTTLRVLRVEFL--FILLDKYPYI 67
E++L V I + D + LVCK + ++ R + + + ++ ++P +
Sbjct: 9 FPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKV 68
Query: 68 KTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESV 127
++++L P D +L+ G Y +E ++ + LE +
Sbjct: 69 RSVELKGKPHFADF------------------NLVPDGWGGYVYPWIEAMSSSYTWLEEI 110
Query: 128 DLSYCCGFGD-REAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEI 186
L D E A SF + K + L C + GLA IA C NL+ L L+ ++
Sbjct: 111 RLKRMVVTDDCLELIAKSFKN-FKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRES-DV 168
Query: 187 SDLGIXXXXXXXXXXXXXXVSYLKLTNDSFCSIATLAKLESLVMVGCPC--VDDTGLRFL 244
D+ +L D++ S+ +L + C V + L L
Sbjct: 169 DDVS---------------GHWLSHFPDTYTSLVSLN-------ISCLASEVSFSALERL 206
Query: 245 ESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHM------- 297
+ CP LK++ ++R V L ++++ L +L G +E+ + +
Sbjct: 207 VTRCPNLKSLKLNRA--VPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGC 264
Query: 298 RDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTDSCRGL-VCLKIES- 355
++L+ L D + + C L + LS V + D + L C K++
Sbjct: 265 KELRCLSGF-WDAV---PAYLPAVYSVCSRLTTLNLSYA-TVQSYDLVKLLCQCPKLQRL 319
Query: 356 --CNMITEKGLYQLGSFCLRLEEIDLTDCN--------GVNDKGLEYLSRCSELLFLKLG 405
+ I + GL L S C L E+ + + ++GL +S L L
Sbjct: 320 WVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLY 379
Query: 406 LCENISDKGLFYIASN---------CLRIQGLDLYKCSGIGDDGLAALSNGCKKLKKLNL 456
C +++ L IA N C+ Y D G A+ CK L++L+L
Sbjct: 380 FCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSL 439
Query: 457 SYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDS 516
S +TD+ E+I ++ + G+ + +GC L L+++ C D
Sbjct: 440 S--GLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCP-FGDK 496
Query: 517 GFWALAYYSQNLRQINLSYCALSDMALCMVMGN 549
A A + +R + +S C++S C ++G
Sbjct: 497 ALLANASKLETMRSLWMSSCSVS-FGACKLLGQ 528
>pdb|1WL4|A Chain A, Human Cytosolic Acetoacetyl-Coa Thiolase Complexed With
Coa
pdb|1WL5|A Chain A, Human Cytosolic Acetoacetyl-Coa Thiolase
Length = 397
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 355 SCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGL 406
SC MI GL + CL ++ I + D + V G+E +S+ L +L+ G+
Sbjct: 87 SCQMIXGSGLK---AVCLAVQSIGIGDSSIVVAGGMENMSKAPHLAYLRTGV 135
>pdb|1HQT|A Chain A, The Crystal Structure Of An Aldehyde Reductase Y50f
Mutant- Nadp Complex And Its Implications For Substrate
Binding
Length = 326
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 41 VDSVTRTTLRVLRVEFLFILLDKYPYIKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKS 100
V+ R TL L++E+L + L +PY + P+ DGT+ + + +W ++L++
Sbjct: 92 VEPALRKTLADLQLEYLDLYLMHWPYAFERGDNPFPKNADGTIRYDATHYKDTW-KALEA 150
Query: 101 LI---LSRSTGL 109
L+ L R+ GL
Sbjct: 151 LVAKGLVRALGL 162
>pdb|3CV7|A Chain A, Crystal Structure Of Porcine Aldehyde Reductase Ternary
Complex
pdb|3H4G|A Chain A, Structure Of Aldehyde Reductase Holoenzyme In Complex With
Potent Aldose Reductase Inhibitor Fidarestat:
Implications For Inhibitor Binding And Selectivity
pdb|3FX4|A Chain A, Porcine Aldehyde Reductase In Ternary Complex With
Inhibitor
Length = 325
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 41 VDSVTRTTLRVLRVEFLFILLDKYPYIKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKS 100
V+ R TL L++E+L + L +PY + P+ DGT+ + + +W ++L++
Sbjct: 91 VEPALRKTLADLQLEYLDLYLMHWPYAFERGDNPFPKNADGTIRYDATHYKDTW-KALEA 149
Query: 101 LI---LSRSTGL 109
L+ L R+ GL
Sbjct: 150 LVAKGLVRALGL 161
>pdb|1AE4|A Chain A, Aldehyde Reductase Complexed With Cofactor And Inhibitor,
Alpha Carbon Atoms Only
Length = 325
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 41 VDSVTRTTLRVLRVEFLFILLDKYPYIKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKS 100
V+ R TL L++E+L + L +PY + P+ DGT+ + + +W ++L++
Sbjct: 91 VEPALRKTLADLQLEYLDLYLMHWPYAFERGDNPFPKNADGTIRYDATHYKDTW-KALEA 149
Query: 101 LI---LSRSTGL 109
L+ L R+ GL
Sbjct: 150 LVAKGLVRALGL 161
>pdb|1CWN|A Chain A, Crystal Structure Of Porcine Aldehyde Reductase Holoenzyme
Length = 324
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 41 VDSVTRTTLRVLRVEFLFILLDKYPYIKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKS 100
V+ R TL L++E+L + L +PY + P+ DGT+ + + +W ++L++
Sbjct: 90 VEPALRKTLADLQLEYLDLYLMHWPYAFERGDNPFPKNADGTIRYDATHYKDTW-KALEA 148
Query: 101 LI---LSRSTGL 109
L+ L R+ GL
Sbjct: 149 LVAKGLVRALGL 160
>pdb|1DJ3|A Chain A, Structures Of Adenylosuccinate Synthetase From Triticum
Aestivum And Arabidopsis Thaliana
pdb|1DJ3|B Chain B, Structures Of Adenylosuccinate Synthetase From Triticum
Aestivum And Arabidopsis Thaliana
Length = 442
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 45/124 (36%), Gaps = 18/124 (14%)
Query: 57 LFILLDKYPYIKT---------LDLSVCPRVNDGTVSFLLSQLSLSWTRSLKSLILS--- 104
L I YP++ + L + PRV + + + + + + +L
Sbjct: 245 LDIDFGTYPFVTSSSPSAGGICTGLGIAPRVIGDLIGVVKAYTTRVGSGPFPTELLGEEG 304
Query: 105 ---RSTGLRYRGLEMLARACPLLESVDLSYCC---GFGDREAAALSFASGLKEVKLDKCL 158
R G+ + R C L+ V L YCC GF L SGL E+KL
Sbjct: 305 DVLRKAGMEFGTTTGRPRRCGWLDIVALKYCCDINGFSSLNLTKLDVLSGLPEIKLGVSY 364
Query: 159 NVTD 162
N D
Sbjct: 365 NQMD 368
>pdb|4F91|B Chain B, Brr2 Helicase Region
Length = 1724
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 33/68 (48%)
Query: 449 KKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLK 508
K+L + TD+G+E + I ++ D E L ++T + + +A C R +++L
Sbjct: 1560 KQLPHFTSEHIKRCTDKGVESVFDIMEMEDEERNALLQLTDSQIADVARFCNRYPNIELS 1619
Query: 509 HCAKIDDS 516
+ DS
Sbjct: 1620 YEVVDKDS 1627
>pdb|4F92|B Chain B, Brr2 Helicase Region S1087l
pdb|4F93|B Chain B, Brr2 Helicase Region S1087l, Mg-Atp
Length = 1724
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 33/68 (48%)
Query: 449 KKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLK 508
K+L + TD+G+E + I ++ D E L ++T + + +A C R +++L
Sbjct: 1560 KQLPHFTSEHIKRCTDKGVESVFDIMEMEDEERNALLQLTDSQIADVARFCNRYPNIELS 1619
Query: 509 HCAKIDDS 516
+ DS
Sbjct: 1620 YEVVDKDS 1627
>pdb|4G84|A Chain A, Crystal Structure Of Human Hisrs
pdb|4G84|B Chain B, Crystal Structure Of Human Hisrs
Length = 464
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 46/96 (47%), Gaps = 2/96 (2%)
Query: 488 TSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQNLRQIN-LSYCALSDMALCMV 546
T+ +A+ K+L + LK +++ D+G A Y +N + +N L YC + + L +
Sbjct: 364 TTETQVLVASAQKKLLEERLKLVSELWDAGIKAELLYKKNPKLLNQLQYCEEAGIPLVAI 423
Query: 547 MGNMTRLQDAKLVHLTNCTREGFELALRSCCMRIKK 582
+G L+D + + +RE ++ IK+
Sbjct: 424 IGEQ-ELKDGVIKLRSVTSREEVDVRREDLVEEIKR 458
>pdb|2ALR|A Chain A, Aldehyde Reductase
Length = 324
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 41 VDSVTRTTLRVLRVEFLFILLDKYPYIKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKS 100
V+ R TL L++E+L + L +PY + P+ DGT+ + + +W ++L++
Sbjct: 90 VEPALRKTLADLQLEYLDLYLMHWPYAFERGDNPFPKNADGTICYDSTHYKETW-KALEA 148
Query: 101 LI 102
L+
Sbjct: 149 LV 150
>pdb|3SUZ|A Chain A, Crystal Structure Of Rat Mint2 Ppc
Length = 287
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 319 QTISFNCKSLVEIGLSKCLGVTNTDSCRGLVCLKIESCNMITEKGLY 365
Q +S N SLV + L+ C G+ + V L I SC +TE LY
Sbjct: 240 QIMSINGTSLVGLPLATCQGIIKGLKNQTQVKLNIVSCPPVTETPLY 286
>pdb|4G85|A Chain A, Crystal Structure Of Human Hisrs
pdb|4G85|B Chain B, Crystal Structure Of Human Hisrs
Length = 517
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 495 LAAGCKRLADLDLKHCAKIDDSGFWALAYYSQNLRQIN-LSYCALSDMALCMVMGNMTRL 553
+A+ K+L + LK +++ D+G A Y +N + +N L YC + + L ++G L
Sbjct: 424 VASAQKKLLEERLKLVSELWDAGIKAELLYKKNPKLLNQLQYCEEAGIPLVAIIGEQE-L 482
Query: 554 QDAKLVHLTNCTREGFELALRSCCMRIKK 582
+D + + +RE ++ IK+
Sbjct: 483 KDGVIKLRSVTSREEVDVRREDLVEEIKR 511
>pdb|3E2J|A Chain A, Crystal Structure Of Bovine Coupling Factor B
pdb|3E2J|B Chain B, Crystal Structure Of Bovine Coupling Factor B
pdb|3E2J|C Chain C, Crystal Structure Of Bovine Coupling Factor B
pdb|3E2J|D Chain D, Crystal Structure Of Bovine Coupling Factor B
Length = 176
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 52/112 (46%), Gaps = 23/112 (20%)
Query: 297 MRDLKNLEAITMDGARI-----SDSCFQTISFN----CKSLVEIGLSKCLGVTNTDSC-- 345
+D +L +D +I +DSC +I F+ + + +I L KC + D C
Sbjct: 47 QKDYNHLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIE--DGCLE 104
Query: 346 ---------RGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDK 388
+ ++ ++I SC +T+KG+ L F L+ + L+D GV +K
Sbjct: 105 RLSQLENLQKSMLEMEIISCGNVTDKGIIALHHF-RNLKYLFLSDLPGVKEK 155
>pdb|3DZE|A Chain A, Crystal Structure Of Bovine Coupling Factor B Bound With
Cadmium
pdb|3E3Z|A Chain A, Crystal Structure Of Bovine Coupling Factor B Bound With
Phenylarsine Oxide
pdb|3E4G|A Chain A, Crystal Structure Of Bovine Coupling Factor B, G28e Mutant
Length = 176
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 52/112 (46%), Gaps = 23/112 (20%)
Query: 297 MRDLKNLEAITMDGARI-----SDSCFQTISFN----CKSLVEIGLSKCLGVTNTDSC-- 345
+D +L +D +I +DSC +I F+ + + +I L KC + D C
Sbjct: 47 QKDYNHLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIE--DGCLE 104
Query: 346 ---------RGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDK 388
+ ++ ++I SC +T+KG+ L F L+ + L+D GV +K
Sbjct: 105 RLSQLENLQKSMLEMEIISCGNVTDKGIIALHHF-RNLKYLFLSDLPGVKEK 155
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.139 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,484,847
Number of Sequences: 62578
Number of extensions: 572073
Number of successful extensions: 1709
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1656
Number of HSP's gapped (non-prelim): 46
length of query: 611
length of database: 14,973,337
effective HSP length: 105
effective length of query: 506
effective length of database: 8,402,647
effective search space: 4251739382
effective search space used: 4251739382
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.4 bits)