Query 007252
Match_columns 611
No_of_seqs 347 out of 3557
Neff 11.3
Searched_HMMs 46136
Date Thu Mar 28 21:02:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007252.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007252hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4341 F-box protein containi 100.0 6.5E-35 1.4E-39 263.2 13.7 401 8-607 73-478 (483)
2 PLN00113 leucine-rich repeat r 100.0 2.3E-28 4.9E-33 271.6 18.8 499 58-595 86-589 (968)
3 PLN00113 leucine-rich repeat r 100.0 8.5E-28 1.8E-32 267.0 20.0 469 57-562 110-582 (968)
4 KOG4341 F-box protein containi 99.9 3.7E-26 8.1E-31 206.8 9.8 319 92-456 134-459 (483)
5 KOG2120 SCF ubiquitin ligase, 99.9 5.5E-25 1.2E-29 190.2 11.8 249 5-264 96-353 (419)
6 KOG4194 Membrane glycoprotein 99.8 3.6E-22 7.8E-27 188.5 2.3 362 124-558 80-446 (873)
7 KOG4194 Membrane glycoprotein 99.8 6.6E-22 1.4E-26 186.7 -0.9 350 200-571 79-438 (873)
8 cd00116 LRR_RI Leucine-rich re 99.7 5.6E-15 1.2E-19 143.2 22.5 166 372-543 108-295 (319)
9 KOG2120 SCF ubiquitin ligase, 99.7 1.6E-16 3.5E-21 138.2 8.1 182 302-484 186-373 (419)
10 cd00116 LRR_RI Leucine-rich re 99.6 9.8E-14 2.1E-18 134.5 23.6 160 372-537 137-318 (319)
11 PLN03210 Resistant to P. syrin 99.6 1.2E-14 2.5E-19 162.2 15.1 344 141-515 552-908 (1153)
12 PLN03210 Resistant to P. syrin 99.6 1.2E-14 2.6E-19 162.1 14.2 289 248-565 610-907 (1153)
13 KOG0618 Serine/threonine phosp 99.6 2.4E-16 5.3E-21 157.7 -1.6 241 275-537 241-487 (1081)
14 KOG1947 Leucine rich repeat pr 99.5 1.1E-13 2.3E-18 142.9 15.0 262 164-468 179-446 (482)
15 KOG0444 Cytoskeletal regulator 99.5 1.6E-16 3.5E-21 152.1 -5.6 368 147-564 7-375 (1255)
16 KOG0444 Cytoskeletal regulator 99.5 3.3E-16 7.2E-21 149.9 -4.9 366 198-594 6-378 (1255)
17 KOG1947 Leucine rich repeat pr 99.5 2.1E-13 4.6E-18 140.7 13.4 253 300-573 187-449 (482)
18 KOG0618 Serine/threonine phosp 99.4 2.8E-15 6.1E-20 150.2 -5.4 125 473-610 358-488 (1081)
19 KOG1909 Ran GTPase-activating 99.4 8.4E-12 1.8E-16 112.0 11.8 246 292-561 21-308 (382)
20 KOG1909 Ran GTPase-activating 99.3 9.2E-11 2E-15 105.4 13.3 276 192-525 23-324 (382)
21 KOG3207 Beta-tubulin folding c 99.2 4.5E-12 9.8E-17 116.9 3.3 218 298-542 118-342 (505)
22 KOG3207 Beta-tubulin folding c 99.1 3.6E-11 7.7E-16 111.1 3.9 158 221-381 119-280 (505)
23 KOG0472 Leucine-rich repeat pr 99.0 3.4E-11 7.3E-16 110.0 -2.2 147 198-357 159-308 (565)
24 KOG0472 Leucine-rich repeat pr 98.9 2.2E-11 4.8E-16 111.1 -5.5 110 420-539 432-541 (565)
25 KOG4237 Extracellular matrix p 98.9 1.7E-10 3.7E-15 105.3 -2.6 262 290-561 80-356 (498)
26 PF12937 F-box-like: F-box-lik 98.8 1.4E-09 3.1E-14 70.1 1.5 38 7-45 1-38 (47)
27 KOG3665 ZYG-1-like serine/thre 98.8 3.2E-08 7E-13 102.6 9.9 163 147-335 122-284 (699)
28 KOG4237 Extracellular matrix p 98.7 1.1E-09 2.4E-14 100.1 -1.3 89 391-484 268-356 (498)
29 KOG3665 ZYG-1-like serine/thre 98.7 6E-08 1.3E-12 100.7 9.0 158 372-535 122-284 (699)
30 PRK15387 E3 ubiquitin-protein 98.6 6.2E-08 1.3E-12 101.0 7.4 258 249-566 201-459 (788)
31 PRK15387 E3 ubiquitin-protein 98.6 8.8E-08 1.9E-12 99.9 8.2 264 199-547 201-465 (788)
32 PF14580 LRR_9: Leucine-rich r 98.6 1.5E-08 3.3E-13 85.5 1.3 130 422-561 18-150 (175)
33 KOG2982 Uncharacterized conser 98.5 1.6E-07 3.4E-12 83.0 5.4 205 225-434 47-260 (418)
34 COG5238 RNA1 Ran GTPase-activa 98.4 5.2E-06 1.1E-10 72.7 13.0 221 293-537 22-283 (388)
35 KOG1259 Nischarin, modulator o 98.4 1.1E-07 2.4E-12 84.0 2.4 129 421-562 282-410 (490)
36 PF14580 LRR_9: Leucine-rich r 98.4 7.9E-08 1.7E-12 81.2 1.4 129 448-585 18-147 (175)
37 PF00646 F-box: F-box domain; 98.4 7.4E-08 1.6E-12 62.6 0.3 39 6-45 2-40 (48)
38 KOG2982 Uncharacterized conser 98.4 4.5E-07 9.7E-12 80.2 4.8 65 473-540 198-263 (418)
39 COG5238 RNA1 Ran GTPase-activa 98.3 2.9E-06 6.3E-11 74.2 9.2 100 198-315 29-134 (388)
40 KOG3864 Uncharacterized conser 98.3 5.6E-07 1.2E-11 75.2 4.6 88 399-488 103-190 (221)
41 PRK15370 E3 ubiquitin-protein 98.2 2.4E-06 5.3E-11 89.9 8.0 244 275-561 178-425 (754)
42 KOG3864 Uncharacterized conser 98.2 1.9E-06 4.2E-11 72.0 4.3 91 373-465 102-192 (221)
43 PRK15370 E3 ubiquitin-protein 98.2 6.9E-06 1.5E-10 86.5 9.3 148 372-543 283-432 (754)
44 smart00256 FBOX A Receptor for 98.2 9.6E-07 2.1E-11 55.2 1.8 35 10-45 1-35 (41)
45 KOG4658 Apoptotic ATPase [Sign 98.1 4.1E-06 8.9E-11 89.7 6.7 40 345-387 746-785 (889)
46 KOG4658 Apoptotic ATPase [Sign 98.0 3.9E-06 8.4E-11 89.9 4.7 231 172-412 544-785 (889)
47 KOG1259 Nischarin, modulator o 97.9 5.6E-06 1.2E-10 73.5 2.0 130 396-539 283-412 (490)
48 KOG1859 Leucine-rich repeat pr 97.6 6.7E-06 1.4E-10 82.0 -1.4 181 342-541 105-294 (1096)
49 KOG1859 Leucine-rich repeat pr 97.6 1.7E-05 3.8E-10 79.2 0.8 53 365-417 77-129 (1096)
50 PF13855 LRR_8: Leucine rich r 97.6 7.9E-06 1.7E-10 56.3 -1.8 59 500-561 1-59 (61)
51 KOG0617 Ras suppressor protein 97.3 4.6E-06 9.9E-11 67.6 -5.8 153 395-561 31-183 (264)
52 KOG4308 LRR-containing protein 97.2 0.00014 3.1E-09 72.6 1.7 190 369-564 112-331 (478)
53 PF13855 LRR_8: Leucine rich r 97.1 0.0002 4.2E-09 49.3 1.5 58 373-433 2-59 (61)
54 KOG2123 Uncharacterized conser 97.0 0.00014 3E-09 64.3 -0.2 82 424-513 20-101 (388)
55 KOG2123 Uncharacterized conser 97.0 0.00023 5E-09 62.9 0.7 116 449-575 19-138 (388)
56 KOG0617 Ras suppressor protein 96.7 3.7E-05 8E-10 62.5 -6.1 107 198-312 55-161 (264)
57 KOG2739 Leucine-rich acidic nu 96.6 0.00043 9.4E-09 61.0 -0.3 89 470-561 61-153 (260)
58 PF12799 LRR_4: Leucine Rich r 96.5 0.0024 5.1E-08 40.0 2.7 39 500-541 1-39 (44)
59 smart00367 LRR_CC Leucine-rich 96.5 0.0038 8.2E-08 33.9 2.9 24 499-522 1-24 (26)
60 PLN03215 ascorbic acid mannose 96.5 0.0016 3.4E-08 62.0 2.1 40 5-44 2-41 (373)
61 smart00367 LRR_CC Leucine-rich 96.4 0.0049 1.1E-07 33.4 3.1 22 423-444 2-23 (26)
62 PRK15386 type III secretion pr 96.4 0.0099 2.1E-07 57.4 7.2 12 274-285 51-62 (426)
63 KOG2739 Leucine-rich acidic nu 96.2 0.0016 3.4E-08 57.6 0.7 90 342-432 61-152 (260)
64 PLN03150 hypothetical protein; 96.2 0.0057 1.2E-07 64.4 5.0 60 448-510 441-500 (623)
65 KOG4308 LRR-containing protein 96.1 0.0025 5.4E-08 63.9 1.7 191 374-571 89-309 (478)
66 PLN03150 hypothetical protein; 96.1 0.0092 2E-07 62.9 5.6 84 451-539 420-503 (623)
67 PRK15386 type III secretion pr 95.9 0.0098 2.1E-07 57.5 4.4 137 370-537 50-188 (426)
68 PF12799 LRR_4: Leucine Rich r 95.8 0.0085 1.8E-07 37.5 2.6 35 526-562 1-35 (44)
69 KOG4579 Leucine-rich repeat (L 95.0 0.011 2.3E-07 46.8 1.2 89 450-543 28-117 (177)
70 KOG1644 U2-associated snRNP A' 95.0 0.032 7E-07 47.4 4.0 87 470-559 60-148 (233)
71 KOG1644 U2-associated snRNP A' 94.7 0.0088 1.9E-07 50.7 0.1 106 474-585 42-147 (233)
72 KOG2997 F-box protein FBX9 [Ge 94.6 0.017 3.8E-07 52.3 1.7 40 6-45 106-149 (366)
73 KOG0281 Beta-TrCP (transducin 94.4 0.016 3.5E-07 52.8 0.9 42 4-46 72-117 (499)
74 COG4886 Leucine-rich repeat (L 93.9 0.038 8.3E-07 55.2 2.7 39 497-539 252-290 (394)
75 PF13516 LRR_6: Leucine Rich r 93.9 0.035 7.5E-07 29.3 1.3 18 526-543 2-19 (24)
76 PF13516 LRR_6: Leucine Rich r 93.7 0.061 1.3E-06 28.4 2.0 23 499-522 1-23 (24)
77 KOG0531 Protein phosphatase 1, 93.4 0.02 4.4E-07 57.4 -0.3 109 448-568 94-203 (414)
78 COG4886 Leucine-rich repeat (L 93.0 0.17 3.7E-06 50.6 5.7 13 199-211 116-128 (394)
79 KOG4579 Leucine-rich repeat (L 91.5 0.081 1.8E-06 42.0 1.0 84 475-562 28-111 (177)
80 smart00368 LRR_RI Leucine rich 91.4 0.35 7.6E-06 26.7 3.2 21 501-522 3-23 (28)
81 PF13013 F-box-like_2: F-box-l 90.1 0.23 4.9E-06 38.1 2.2 30 6-36 21-50 (109)
82 PF13504 LRR_7: Leucine rich r 90.1 0.2 4.3E-06 23.8 1.2 13 527-539 2-14 (17)
83 KOG0531 Protein phosphatase 1, 89.4 0.1 2.3E-06 52.3 -0.1 110 421-542 93-202 (414)
84 smart00368 LRR_RI Leucine rich 88.6 0.54 1.2E-05 25.9 2.5 22 526-548 2-23 (28)
85 PF00560 LRR_1: Leucine Rich R 82.3 0.34 7.3E-06 24.9 -0.3 15 527-541 1-15 (22)
86 PF13306 LRR_5: Leucine rich r 81.8 0.8 1.7E-05 37.0 1.5 32 371-404 34-65 (129)
87 KOG0532 Leucine-rich repeat (L 81.7 0.18 4E-06 50.1 -2.6 87 448-543 165-251 (722)
88 KOG0274 Cdc4 and related F-box 80.7 0.52 1.1E-05 48.4 0.1 45 4-49 105-149 (537)
89 KOG3763 mRNA export factor TAP 78.5 4.4 9.5E-05 40.7 5.5 90 241-332 210-307 (585)
90 PF13306 LRR_5: Leucine rich r 77.5 1.1 2.4E-05 36.1 1.1 34 370-406 79-112 (129)
91 KOG3763 mRNA export factor TAP 72.3 7.6 0.00017 39.1 5.4 91 165-255 210-307 (585)
92 smart00369 LRR_TYP Leucine-ric 71.7 3.3 7.1E-05 22.1 1.7 18 526-543 2-19 (26)
93 smart00370 LRR Leucine-rich re 71.7 3.3 7.1E-05 22.1 1.7 18 526-543 2-19 (26)
94 KOG0532 Leucine-rich repeat (L 62.2 1.4 3.1E-05 44.2 -1.7 102 450-562 144-245 (722)
95 KOG3926 F-box proteins [Amino 60.0 11 0.00023 34.0 3.4 40 4-43 199-238 (332)
96 PF07723 LRR_2: Leucine Rich R 47.5 16 0.00034 19.7 1.6 7 426-432 3-9 (26)
97 smart00365 LRR_SD22 Leucine-ri 47.4 17 0.00037 19.6 1.7 15 526-540 2-16 (26)
98 smart00364 LRR_BAC Leucine-ric 37.6 17 0.00037 19.6 0.7 16 526-541 2-17 (26)
99 KOG2502 Tub family proteins [G 25.4 51 0.0011 31.3 2.1 41 5-45 43-90 (355)
100 PF12586 DUF3760: Protein of u 24.8 65 0.0014 20.4 1.9 28 12-40 6-33 (46)
101 KOG3735 Tropomodulin and leiom 22.7 2.4E+02 0.0053 26.9 5.9 32 492-524 247-278 (353)
No 1
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=100.00 E-value=6.5e-35 Score=263.19 Aligned_cols=401 Identities=27% Similarity=0.463 Sum_probs=267.7
Q ss_pred cCCcHHHHHHHHhhhCCCCCchhhHhhchhHHhhhcccccccccchHHHHHHHHhcCCCCcEEeccCCCCCChhhHHHHh
Q 007252 8 DVLTEDLLVRVREKIGDELDSKTWRLVCKEFSRVDSVTRTTLRVLRVEFLFILLDKYPYIKTLDLSVCPRVNDGTVSFLL 87 (611)
Q Consensus 8 ~~LP~e~l~~If~~L~~~~~~~~~~~vc~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~ 87 (611)
-.||+|++..||++|+ .+.+.+++.||+.|...+.+. .+++.+++-....
T Consensus 73 ~~LPpEl~lkvFS~LD-tksl~r~a~~c~~~n~~AlD~-------------------~~~q~idL~t~~r---------- 122 (483)
T KOG4341|consen 73 RSLPPELLLKVFSMLD-TKSLCRAAQCCTMWNKLALDG-------------------SCWQHIDLFTFQR---------- 122 (483)
T ss_pred ccCCHHHHHHHHHHHh-HHHHHHHHHHHHHhhhhhhcc-------------------ccceeeehhcchh----------
Confidence 3699999999999999 999999999999999876654 2222222221100
Q ss_pred hhhhhhhccCCceEEeccccCCChHHHHHHHHhCCCccEEeccCCCCCChhhhHHhhcCCCCcEEeccCCCCCChHHHHH
Q 007252 88 SQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREAAALSFASGLKEVKLDKCLNVTDVGLAK 167 (611)
Q Consensus 88 ~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 167 (611)
......+..+...|. ..||+|++.||..+.+..+..
T Consensus 123 --------------------Dv~g~VV~~~~~Rcg------------------------g~lk~LSlrG~r~v~~sslrt 158 (483)
T KOG4341|consen 123 --------------------DVDGGVVENMISRCG------------------------GFLKELSLRGCRAVGDSSLRT 158 (483)
T ss_pred --------------------cCCCcceehHhhhhc------------------------cccccccccccccCCcchhhH
Confidence 111112222222221 234455555555555555666
Q ss_pred HHhcCCccceeecccccccChHHHHHHHHcCCcCcEEeccCcccChHHHHHhhhcCCCcEEEecCCCCCChhHHHHHHhc
Q 007252 168 IAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESG 247 (611)
Q Consensus 168 ~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 247 (611)
+...||++++|.+.+|..+++.....+.+.|+.|+. |++..|..+++..+.+++++
T Consensus 159 ~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~------------------------l~L~~c~~iT~~~Lk~la~g 214 (483)
T KOG4341|consen 159 FASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRH------------------------LNLHSCSSITDVSLKYLAEG 214 (483)
T ss_pred HhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhh------------------------hhhcccchhHHHHHHHHHHh
Confidence 666677777776666665555555444444443333 33344455666666666666
Q ss_pred CCCccEEEeccccccChHHHHHHHhcCCCCceeccCCCCCccchhHHHHhhcCCCccEEEccCcccChHHHHHHHHhCCC
Q 007252 248 CPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKS 327 (611)
Q Consensus 248 ~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~ 327 (611)
|++|+++++++|+.+...++..+..++..++++...+|
T Consensus 215 C~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC------------------------------------------ 252 (483)
T KOG4341|consen 215 CRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGC------------------------------------------ 252 (483)
T ss_pred hhhHHHhhhccCchhhcCcchHHhccchhhhhhhhccc------------------------------------------
Confidence 77777777777666555555554444433333333333
Q ss_pred CcEEeeccCCCCCCCCCCCCCcEEecCCCccCChhHHHHHHhccCCCcEEecCCCCCCChhhhhhhccCCCceEEEecCC
Q 007252 328 LVEIGLSKCLGVTNTDSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLC 407 (611)
Q Consensus 328 L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 407 (611)
.......+..+..+++-+.++++..|+
T Consensus 253 -----------------------------~e~~le~l~~~~~~~~~i~~lnl~~c~------------------------ 279 (483)
T KOG4341|consen 253 -----------------------------LELELEALLKAAAYCLEILKLNLQHCN------------------------ 279 (483)
T ss_pred -----------------------------ccccHHHHHHHhccChHhhccchhhhc------------------------
Confidence 223333333334344444445544443
Q ss_pred CCCChHhHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhcCccCceecccccCCCChHHHHHhh-CCCCCCEEecCCCcc
Q 007252 408 ENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKKLKKLNLSYCVNVTDRGMEHIR-FIEDLSDLELRGLTK 486 (611)
Q Consensus 408 ~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~-~~~~L~~L~l~~c~~ 486 (611)
.++|.++..+...+..|+.+..++|..+++..+..+.+++++|+.|.+..|.++++.++..++ +++.|+.+++.+|..
T Consensus 280 -~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~ 358 (483)
T KOG4341|consen 280 -QLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGL 358 (483)
T ss_pred -cccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccce
Confidence 445555555555666777777777777777777777777777777777777777777777766 367777777777777
Q ss_pred ccHHHHHHHHhcCCccCEeeccccCCCCHHHHHHHHh---hCCCCCEEEeccCC-CChhHHHHHhccccccccceeeccc
Q 007252 487 ITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAY---YSQNLRQINLSYCA-LSDMALCMVMGNMTRLQDAKLVHLT 562 (611)
Q Consensus 487 l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~---~~~~L~~L~l~~~~-l~~~~~~~~l~~~~~L~~l~l~~~~ 562 (611)
+++..+.++..+|+.||.+.+++|..+++.++.++.. ....|..+.+++|+ +++..+ +.+..+++|+++++.+|+
T Consensus 359 ~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~L-e~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 359 ITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATL-EHLSICRNLERIELIDCQ 437 (483)
T ss_pred ehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHH-HHHhhCcccceeeeechh
Confidence 7777777788889999999999998889888777654 35789999999999 677776 899999999999999999
Q ss_pred CCCHHHHHHHHhhcCCCccchhhhhhhhhcCChHHHhhcccccce
Q 007252 563 NCTREGFELALRSCCMRIKKVKLLAPIRFLLSSEILETLHAAGCK 607 (611)
Q Consensus 563 ~~~~~~~~~~~~~~c~~l~~l~l~~~~~~~~p~~~~~~l~~~~c~ 607 (611)
+++.++++++... | ..+.+++++.+..||++..+++|+.|+
T Consensus 438 ~vtk~~i~~~~~~-l---p~i~v~a~~a~~t~p~~v~~~~~~v~r 478 (483)
T KOG4341|consen 438 DVTKEAISRFATH-L---PNIKVHAYFAPVTPPGFVKGLHQRVCR 478 (483)
T ss_pred hhhhhhhHHHHhh-C---ccceehhhccCCCCccccccchhhccc
Confidence 9999999997655 4 456667799999999999999998874
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.96 E-value=2.3e-28 Score=271.60 Aligned_cols=499 Identities=18% Similarity=0.098 Sum_probs=306.2
Q ss_pred HHHHhcCCCCcEEeccCCCCCChhhHHHHhhhhhhhhccCCceEEeccccCCChHHHHHHHHhCCCccEEeccCCCCCCh
Q 007252 58 FILLDKYPYIKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGD 137 (611)
Q Consensus 58 ~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~ 137 (611)
+..+..+++|+.|+++++.-...... .+ .....+|++|+++++. +...... ..+++|++|+++++. +..
T Consensus 86 ~~~~~~l~~L~~L~Ls~n~~~~~ip~-~~-----~~~l~~L~~L~Ls~n~-l~~~~p~---~~l~~L~~L~Ls~n~-~~~ 154 (968)
T PLN00113 86 SSAIFRLPYIQTINLSNNQLSGPIPD-DI-----FTTSSSLRYLNLSNNN-FTGSIPR---GSIPNLETLDLSNNM-LSG 154 (968)
T ss_pred ChHHhCCCCCCEEECCCCccCCcCCh-HH-----hccCCCCCEEECcCCc-cccccCc---cccCCCCEEECcCCc-ccc
Confidence 34556677888888876432111111 01 1245678888887763 2211110 246788888887653 333
Q ss_pred hhhHHhhcCCCCcEEeccCCCCCChHHHHHHHhcCCccceeecccccccChHHHHHHHHcCCcCcEEeccCcccChHHHH
Q 007252 138 REAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFC 217 (611)
Q Consensus 138 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~ 217 (611)
.....+..+++|++|++.++ .+.......+. .+++|++|+++++ .+.... ......+++|+.|++++|.+......
T Consensus 155 ~~p~~~~~l~~L~~L~L~~n-~l~~~~p~~~~-~l~~L~~L~L~~n-~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~p~ 230 (968)
T PLN00113 155 EIPNDIGSFSSLKVLDLGGN-VLVGKIPNSLT-NLTSLEFLTLASN-QLVGQI-PRELGQMKSLKWIYLGYNNLSGEIPY 230 (968)
T ss_pred cCChHHhcCCCCCEEECccC-cccccCChhhh-hCcCCCeeeccCC-CCcCcC-ChHHcCcCCccEEECcCCccCCcCCh
Confidence 44556777788888888874 33222222333 3778888888876 332211 12234677888888888877665566
Q ss_pred HhhhcCCCcEEEecCCCCCChhHHHHHHhcCCCccEEEeccccccChHHHHHHHhcCCCCceeccCCCCCccchhHHHHh
Q 007252 218 SIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHM 297 (611)
Q Consensus 218 ~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l 297 (611)
.+..+++|++|++.+|. +.......+.. +++|+.|+++++.... .++..+..+++|++|+++++. +.......+
T Consensus 231 ~l~~l~~L~~L~L~~n~-l~~~~p~~l~~-l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~Ls~n~--l~~~~p~~~ 304 (968)
T PLN00113 231 EIGGLTSLNHLDLVYNN-LTGPIPSSLGN-LKNLQYLFLYQNKLSG--PIPPSIFSLQKLISLDLSDNS--LSGEIPELV 304 (968)
T ss_pred hHhcCCCCCEEECcCce-eccccChhHhC-CCCCCEEECcCCeeec--cCchhHhhccCcCEEECcCCe--eccCCChhH
Confidence 67778888888888754 33333333444 7888888887754321 123334567788888887764 344455666
Q ss_pred hcCCCccEEEccCcccChHHHHHHHHhCCCCcEEeeccCCCCCC----CCCCCCCcEEecCCCccCChhHHHHHHhccCC
Q 007252 298 RDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTN----TDSCRGLVCLKIESCNMITEKGLYQLGSFCLR 373 (611)
Q Consensus 298 ~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 373 (611)
..+++|+.|++.++.+.......+ ..+++|+.|+++++..... +..+++|+.|+++++. +.......+. .+++
T Consensus 305 ~~l~~L~~L~l~~n~~~~~~~~~~-~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~-l~~~~p~~~~-~~~~ 381 (968)
T PLN00113 305 IQLQNLEILHLFSNNFTGKIPVAL-TSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNN-LTGEIPEGLC-SSGN 381 (968)
T ss_pred cCCCCCcEEECCCCccCCcCChhH-hcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCe-eEeeCChhHh-CcCC
Confidence 778888888888876654332223 2678888888887753322 5667788888888754 2221112222 4578
Q ss_pred CcEEecCCCCCCChhhhhhhccCCCceEEEecCCCCCChHhHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhcCccCce
Q 007252 374 LEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKKLKK 453 (611)
Q Consensus 374 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 453 (611)
|+.|++++ +.+.......+..+++|+.|++++| .++......+. .+++|+.|+++++ .++.. +......+++|+.
T Consensus 382 L~~L~l~~-n~l~~~~p~~~~~~~~L~~L~L~~n-~l~~~~p~~~~-~l~~L~~L~Ls~N-~l~~~-~~~~~~~l~~L~~ 456 (968)
T PLN00113 382 LFKLILFS-NSLEGEIPKSLGACRSLRRVRLQDN-SFSGELPSEFT-KLPLVYFLDISNN-NLQGR-INSRKWDMPSLQM 456 (968)
T ss_pred CCEEECcC-CEecccCCHHHhCCCCCCEEECcCC-EeeeECChhHh-cCCCCCEEECcCC-cccCc-cChhhccCCCCcE
Confidence 88888887 5666555566777888999988887 44433223333 6788899999886 34322 1122235788999
Q ss_pred ecccccCCCChHHHHHhhCCCCCCEEecCCCccccHHHHHHHHhcCCccCEeeccccCCCCHHHHHHHHhhCCCCCEEEe
Q 007252 454 LNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQNLRQINL 533 (611)
Q Consensus 454 L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l 533 (611)
|++++|. +...... ....++|+.|++++| .++...... ..++++|+.|++++| .+.......+ ..+++|+.|++
T Consensus 457 L~L~~n~-~~~~~p~-~~~~~~L~~L~ls~n-~l~~~~~~~-~~~l~~L~~L~Ls~N-~l~~~~p~~~-~~l~~L~~L~L 530 (968)
T PLN00113 457 LSLARNK-FFGGLPD-SFGSKRLENLDLSRN-QFSGAVPRK-LGSLSELMQLKLSEN-KLSGEIPDEL-SSCKKLVSLDL 530 (968)
T ss_pred EECcCce-eeeecCc-ccccccceEEECcCC-ccCCccChh-hhhhhccCEEECcCC-cceeeCChHH-cCccCCCEEEC
Confidence 9998864 3221111 224578999999885 454332222 345789999999999 6543322223 34689999999
Q ss_pred ccCCCChhHHHHHhccccccccceeecccCCCHHHHHHHHhhcCCCccchhhh-hhhhhcCCh
Q 007252 534 SYCALSDMALCMVMGNMTRLQDAKLVHLTNCTREGFELALRSCCMRIKKVKLL-APIRFLLSS 595 (611)
Q Consensus 534 ~~~~l~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~c~~l~~l~l~-~~~~~~~p~ 595 (611)
++|.++.... ..+..+++|+.|++.+|.- +.. +.. .+..++.|+.++++ ..+...+|.
T Consensus 531 s~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l-~~~-~p~-~l~~l~~L~~l~ls~N~l~~~~p~ 589 (968)
T PLN00113 531 SHNQLSGQIP-ASFSEMPVLSQLDLSQNQL-SGE-IPK-NLGNVESLVQVNISHNHLHGSLPS 589 (968)
T ss_pred CCCcccccCC-hhHhCcccCCEEECCCCcc-ccc-CCh-hHhcCcccCEEeccCCcceeeCCC
Confidence 9999876665 6778889999999887743 211 111 12336788888886 334444553
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.95 E-value=8.5e-28 Score=267.02 Aligned_cols=469 Identities=17% Similarity=0.130 Sum_probs=324.5
Q ss_pred HHHHHhcCCCCcEEeccCCCCCChhhHHHHhhhhhhhhccCCceEEeccccCCChHHHHHHHHhCCCccEEeccCCCCCC
Q 007252 57 LFILLDKYPYIKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFG 136 (611)
Q Consensus 57 ~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~ 136 (611)
+..++....+|++|+++++.... .+ +....++|++|+++++ .+.......+ ..+++|++|+++++. +.
T Consensus 110 p~~~~~~l~~L~~L~Ls~n~l~~-----~~----p~~~l~~L~~L~Ls~n-~~~~~~p~~~-~~l~~L~~L~L~~n~-l~ 177 (968)
T PLN00113 110 PDDIFTTSSSLRYLNLSNNNFTG-----SI----PRGSIPNLETLDLSNN-MLSGEIPNDI-GSFSSLKVLDLGGNV-LV 177 (968)
T ss_pred ChHHhccCCCCCEEECcCCcccc-----cc----CccccCCCCEEECcCC-cccccCChHH-hcCCCCCEEECccCc-cc
Confidence 44556678999999999853221 12 2345789999999998 3333323333 478999999999774 44
Q ss_pred hhhhHHhhcCCCCcEEeccCCCCCChHHHHHHHhcCCccceeecccccccChHHHHHHHHcCCcCcEEeccCcccChHHH
Q 007252 137 DREAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSF 216 (611)
Q Consensus 137 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~ 216 (611)
...+..+..+++|++|++.++ .+.......+. .+++|++|++.++ .+.... ......+++|++|++++|.+.....
T Consensus 178 ~~~p~~~~~l~~L~~L~L~~n-~l~~~~p~~l~-~l~~L~~L~L~~n-~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~p 253 (968)
T PLN00113 178 GKIPNSLTNLTSLEFLTLASN-QLVGQIPRELG-QMKSLKWIYLGYN-NLSGEI-PYEIGGLTSLNHLDLVYNNLTGPIP 253 (968)
T ss_pred ccCChhhhhCcCCCeeeccCC-CCcCcCChHHc-CcCCccEEECcCC-ccCCcC-ChhHhcCCCCCEEECcCceeccccC
Confidence 445567888999999999985 34332223333 4899999999987 443222 2223578999999999998776666
Q ss_pred HHhhhcCCCcEEEecCCCCCChhHHHHHHhcCCCccEEEeccccccChHHHHHHHhcCCCCceeccCCCCCccchhHHHH
Q 007252 217 CSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHH 296 (611)
Q Consensus 217 ~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 296 (611)
..+..+++|++|+++++. +.......+.. +++|++|+++++.... .++..+..+++|+.|++.++. +.......
T Consensus 254 ~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~-l~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~l~~n~--~~~~~~~~ 327 (968)
T PLN00113 254 SSLGNLKNLQYLFLYQNK-LSGPIPPSIFS-LQKLISLDLSDNSLSG--EIPELVIQLQNLEILHLFSNN--FTGKIPVA 327 (968)
T ss_pred hhHhCCCCCCEEECcCCe-eeccCchhHhh-ccCcCEEECcCCeecc--CCChhHcCCCCCcEEECCCCc--cCCcCChh
Confidence 778899999999999864 43333344544 8999999999864322 234556678999999998874 34445667
Q ss_pred hhcCCCccEEEccCcccChHHHHHHHHhCCCCcEEeeccCCCCCC----CCCCCCCcEEecCCCccCChhHHHHHHhccC
Q 007252 297 MRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTN----TDSCRGLVCLKIESCNMITEKGLYQLGSFCL 372 (611)
Q Consensus 297 l~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 372 (611)
+..+++|+.|++.++.+.......+ ..+++|+.|+++++..... +...++|+.|++.++. +....... ...++
T Consensus 328 ~~~l~~L~~L~L~~n~l~~~~p~~l-~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~-l~~~~p~~-~~~~~ 404 (968)
T PLN00113 328 LTSLPRLQVLQLWSNKFSGEIPKNL-GKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNS-LEGEIPKS-LGACR 404 (968)
T ss_pred HhcCCCCCEEECcCCCCcCcCChHH-hCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCE-ecccCCHH-HhCCC
Confidence 8889999999999988764332333 3678999999988753221 5567889999998865 33222222 33688
Q ss_pred CCcEEecCCCCCCChhhhhhhccCCCceEEEecCCCCCChHhHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhcCccCc
Q 007252 373 RLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKKLK 452 (611)
Q Consensus 373 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 452 (611)
+|+.|++++ +.++......+..++.|+.|+++++ .+++.....+ ..+++|+.|++++|.-... +... ...++|+
T Consensus 405 ~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~~~~~~-~~l~~L~~L~L~~n~~~~~--~p~~-~~~~~L~ 478 (968)
T PLN00113 405 SLRRVRLQD-NSFSGELPSEFTKLPLVYFLDISNN-NLQGRINSRK-WDMPSLQMLSLARNKFFGG--LPDS-FGSKRLE 478 (968)
T ss_pred CCCEEECcC-CEeeeECChhHhcCCCCCEEECcCC-cccCccChhh-ccCCCCcEEECcCceeeee--cCcc-cccccce
Confidence 999999998 5666555566778899999999987 4443222222 2578999999998743211 1111 1247899
Q ss_pred eecccccCCCChHHHHHhhCCCCCCEEecCCCccccHHHHHHHHhcCCccCEeeccccCCCCHHHHHHHHhhCCCCCEEE
Q 007252 453 KLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQNLRQIN 532 (611)
Q Consensus 453 ~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~ 532 (611)
.|++++| .++......+..+++|+.|++++| .+....... ..++++|+.|++++| .++......+ ..+++|+.|+
T Consensus 479 ~L~ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~p~~-~~~l~~L~~L~Ls~N-~l~~~~p~~~-~~l~~L~~L~ 553 (968)
T PLN00113 479 NLDLSRN-QFSGAVPRKLGSLSELMQLKLSEN-KLSGEIPDE-LSSCKKLVSLDLSHN-QLSGQIPASF-SEMPVLSQLD 553 (968)
T ss_pred EEECcCC-ccCCccChhhhhhhccCEEECcCC-cceeeCChH-HcCccCCCEEECCCC-cccccCChhH-hCcccCCEEE
Confidence 9999885 566555566778889999999985 444322222 346889999999999 6654332333 3458999999
Q ss_pred eccCCCChhHHHHHhccccccccceeeccc
Q 007252 533 LSYCALSDMALCMVMGNMTRLQDAKLVHLT 562 (611)
Q Consensus 533 l~~~~l~~~~~~~~l~~~~~L~~l~l~~~~ 562 (611)
+++|.++.... ..+..+++|+.+++.+|+
T Consensus 554 Ls~N~l~~~~p-~~l~~l~~L~~l~ls~N~ 582 (968)
T PLN00113 554 LSQNQLSGEIP-KNLGNVESLVQVNISHNH 582 (968)
T ss_pred CCCCcccccCC-hhHhcCcccCEEeccCCc
Confidence 99999775544 567788889999988874
No 4
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.93 E-value=3.7e-26 Score=206.85 Aligned_cols=319 Identities=25% Similarity=0.451 Sum_probs=197.2
Q ss_pred hhhccCCceEEeccccCCChHHHHHHHHhCCCccEEeccCCCCCChhhhHHhhc-CCCCcEEeccCCCCCChHHHHHHHh
Q 007252 92 LSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREAAALSF-ASGLKEVKLDKCLNVTDVGLAKIAV 170 (611)
Q Consensus 92 ~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~~~~~ 170 (611)
...+..++.|.+.++....+..+..+...||++++|.+.+|..+++.....+++ +++|+++++..|..+++..+..++.
T Consensus 134 ~Rcgg~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~ 213 (483)
T KOG4341|consen 134 SRCGGFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAE 213 (483)
T ss_pred hhhccccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHH
Confidence 456678899999999888888889999999999999999999888888887766 7889999999988899888888888
Q ss_pred cCCccceeecccccccChHHHHHHHHcCCcCcEEeccCc-ccChHHHHHhh-hcCCCcEEEecCCCCCChhHHHHHHhcC
Q 007252 171 RCVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYL-KLTNDSFCSIA-TLAKLESLVMVGCPCVDDTGLRFLESGC 248 (611)
Q Consensus 171 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~-~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 248 (611)
+|++|+++.+++|+.+...++..+.+++..++.+...+| ....+.+..+. .++.+..+++..|..+++.++..+..++
T Consensus 214 gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c 293 (483)
T KOG4341|consen 214 GCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGC 293 (483)
T ss_pred hhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhh
Confidence 899999999999988888777777777777666655554 33333333322 1344444444455555555544444445
Q ss_pred CCccEEEeccccccChHHHHHHHhcCCCCceeccCCCCCccchhHHHHhhcCCCccEEEccCcccChHHHHHHHHhCCCC
Q 007252 249 PLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSL 328 (611)
Q Consensus 249 ~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L 328 (611)
..|+.+..++|..+++..+.++..++++|+.+.+.+|.. +++.++..+...++.|
T Consensus 294 ~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~-------------------------fsd~~ft~l~rn~~~L 348 (483)
T KOG4341|consen 294 HALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQ-------------------------FSDRGFTMLGRNCPHL 348 (483)
T ss_pred hHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccch-------------------------hhhhhhhhhhcCChhh
Confidence 555555555555444444444444444444444443322 3444444444333333
Q ss_pred cEEeeccCCCCCCCCCCCCCcEEecCCCccCChhHHHHHHhccCCCcEEecCCCCCCChhhhhhhcc----CCCceEEEe
Q 007252 329 VEIGLSKCLGVTNTDSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSR----CSELLFLKL 404 (611)
Q Consensus 329 ~~L~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~----~~~L~~L~l 404 (611)
+.+++.+ |..+.+..+..+..+|+.|+.+.++.|..++|++...+.. ...|+.+.+
T Consensus 349 e~l~~e~--------------------~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL 408 (483)
T KOG4341|consen 349 ERLDLEE--------------------CGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLEL 408 (483)
T ss_pred hhhcccc--------------------cceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeee
Confidence 3333333 3334444455555556666666666665565555444432 345555555
Q ss_pred cCCCCCChHhHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhcCccCceecc
Q 007252 405 GLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKKLKKLNL 456 (611)
Q Consensus 405 ~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 456 (611)
++|+.+++..+..+. .|++|+.+++.+|..++.+++..+.+++|+++...+
T Consensus 409 ~n~p~i~d~~Le~l~-~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 409 DNCPLITDATLEHLS-ICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAY 459 (483)
T ss_pred cCCCCchHHHHHHHh-hCcccceeeeechhhhhhhhhHHHHhhCccceehhh
Confidence 555555555554444 455555555555555555555555555555555544
No 5
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=5.5e-25 Score=190.19 Aligned_cols=249 Identities=18% Similarity=0.249 Sum_probs=165.9
Q ss_pred CcccCCcHHHHHHHHhhhCCCCCchhhHhhchhHHhhhcccccccc------cchHHHHHHHHhcCCCCcEEeccCCCCC
Q 007252 5 SALDVLTEDLLVRVREKIGDELDSKTWRLVCKEFSRVDSVTRTTLR------VLRVEFLFILLDKYPYIKTLDLSVCPRV 78 (611)
Q Consensus 5 ~~~~~LP~e~l~~If~~L~~~~~~~~~~~vc~~w~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~~L~l~~~~~~ 78 (611)
..|+.||||++..||+.|. .+++++++.|||||++++.+..-+.+ ..++..+.++.++- +..+.+... ..
T Consensus 96 v~~~slpDEill~IFs~L~-kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~i~p~~l~~l~~rg--V~v~Rlar~-~~ 171 (419)
T KOG2120|consen 96 VSWDSLPDEILLGIFSCLC-KKELLKVSGVCKRFYRLASDESLWQTLDLTGRNIHPDVLGRLLSRG--VIVFRLARS-FM 171 (419)
T ss_pred CCcccCCHHHHHHHHHhcc-HHHHHHHHHHHHHHhhccccccceeeeccCCCccChhHHHHHHhCC--eEEEEcchh-hh
Confidence 4589999999999999999 99999999999999999887654433 23455555555432 222222211 11
Q ss_pred ChhhHHHHhhhhhhhhccCCceEEeccccCCChHHHHHHHHhCCCccEEeccCCCCCChhhhHHhhcCCCCcEEeccCCC
Q 007252 79 NDGTVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREAAALSFASGLKEVKLDKCL 158 (611)
Q Consensus 79 ~~~~~~~l~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 158 (611)
.+..+... +..+...++++|++.. .++...+..+...|..|+.|.+.+. .++|.....+++-.+|+.|+++.|.
T Consensus 172 ~~prlae~----~~~frsRlq~lDLS~s-~it~stl~~iLs~C~kLk~lSlEg~-~LdD~I~~~iAkN~~L~~lnlsm~s 245 (419)
T KOG2120|consen 172 DQPRLAEH----FSPFRSRLQHLDLSNS-VITVSTLHGILSQCSKLKNLSLEGL-RLDDPIVNTIAKNSNLVRLNLSMCS 245 (419)
T ss_pred cCchhhhh----hhhhhhhhHHhhcchh-heeHHHHHHHHHHHHhhhhcccccc-ccCcHHHHHHhccccceeecccccc
Confidence 11112111 1345567889999886 7788888888889999999999875 4778888888888999999999999
Q ss_pred CCChHHHHHHHhcCCccceeecccccccChHHHHHHHHcCCcCcEEeccCc--ccChHHHHHh-hhcCCCcEEEecCCCC
Q 007252 159 NVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYL--KLTNDSFCSI-ATLAKLESLVMVGCPC 235 (611)
Q Consensus 159 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~--~~~~~~~~~l-~~~~~L~~L~l~~~~~ 235 (611)
+++..++..+...|..|..|.+++|...++..-..+..--++|+.|+++++ .+....+..+ .++|+|.+|++++|..
T Consensus 246 G~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~ 325 (419)
T KOG2120|consen 246 GFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVM 325 (419)
T ss_pred ccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccc
Confidence 999888888888899999999999855554422222233356777777776 2332223332 2355555555555555
Q ss_pred CChhHHHHHHhcCCCccEEEeccccccCh
Q 007252 236 VDDTGLRFLESGCPLLKTIFVSRCKFVSS 264 (611)
Q Consensus 236 ~~~~~~~~l~~~~~~L~~L~l~~~~~~~~ 264 (611)
+++..+..+.+ ++.|++|.++.|..+..
T Consensus 326 l~~~~~~~~~k-f~~L~~lSlsRCY~i~p 353 (419)
T KOG2120|consen 326 LKNDCFQEFFK-FNYLQHLSLSRCYDIIP 353 (419)
T ss_pred cCchHHHHHHh-cchheeeehhhhcCCCh
Confidence 55544444444 55555555555544443
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.84 E-value=3.6e-22 Score=188.50 Aligned_cols=362 Identities=19% Similarity=0.204 Sum_probs=169.9
Q ss_pred ccEEeccCCCCCChhhhHHhhcCCCCcEEeccCCCCCChHHHHHHHhcCCccceeecccccccChHHHHHHHHcCCcCcE
Q 007252 124 LESVDLSYCCGFGDREAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDLKS 203 (611)
Q Consensus 124 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~ 203 (611)
-++|+++++ .+.+..+..+..+++|+++++.. +.++ .++.+.....+|++|+|.++ .++...-+.+ ...+.|++
T Consensus 80 t~~LdlsnN-kl~~id~~~f~nl~nLq~v~l~~-N~Lt--~IP~f~~~sghl~~L~L~~N-~I~sv~se~L-~~l~alrs 153 (873)
T KOG4194|consen 80 TQTLDLSNN-KLSHIDFEFFYNLPNLQEVNLNK-NELT--RIPRFGHESGHLEKLDLRHN-LISSVTSEEL-SALPALRS 153 (873)
T ss_pred eeeeecccc-ccccCcHHHHhcCCcceeeeecc-chhh--hcccccccccceeEEeeecc-ccccccHHHH-HhHhhhhh
Confidence 445566533 35555555666666666666665 2222 12333333455777777765 4444333333 24566777
Q ss_pred EeccCcccChHHHHHhhhcCCCcEEEecCCCCCChhHHHHHHhcCCCccEEEeccccccChHHHHHHHhcCCCCceeccC
Q 007252 204 LDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAG 283 (611)
Q Consensus 204 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~ 283 (611)
||++.|.++......+.+-+++++|++.++ .+++.....+.. +.+|..|.++++...+. ....++.+++|+.|++.
T Consensus 154 lDLSrN~is~i~~~sfp~~~ni~~L~La~N-~It~l~~~~F~~-lnsL~tlkLsrNrittL--p~r~Fk~L~~L~~LdLn 229 (873)
T KOG4194|consen 154 LDLSRNLISEIPKPSFPAKVNIKKLNLASN-RITTLETGHFDS-LNSLLTLKLSRNRITTL--PQRSFKRLPKLESLDLN 229 (873)
T ss_pred hhhhhchhhcccCCCCCCCCCceEEeeccc-cccccccccccc-cchheeeecccCccccc--CHHHhhhcchhhhhhcc
Confidence 777777655544444555566777777763 354444333333 45666666665322111 12233445555555555
Q ss_pred CCCCccchhHHHHhhcCCCccEEEccCcccChHHHHHHHHhCCCCcEEeeccCCCCCCCCCCCCCcEEecCCCccCChhH
Q 007252 284 HCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTDSCRGLVCLKIESCNMITEKG 363 (611)
Q Consensus 284 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 363 (611)
.+. +...-...|..+++|+.|.+..+.+.. +.+..
T Consensus 230 rN~--irive~ltFqgL~Sl~nlklqrN~I~k-------------------------------------------L~DG~ 264 (873)
T KOG4194|consen 230 RNR--IRIVEGLTFQGLPSLQNLKLQRNDISK-------------------------------------------LDDGA 264 (873)
T ss_pred ccc--eeeehhhhhcCchhhhhhhhhhcCccc-------------------------------------------ccCcc
Confidence 442 121223334445555555555444321 11111
Q ss_pred HHHHHhccCCCcEEecCCCCCCChhhhhhhccCCCceEEEecCCCCCChHhHHHHHhcCCCCcEEeccCCCCCC---HHH
Q 007252 364 LYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIG---DDG 440 (611)
Q Consensus 364 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~---~~~ 440 (611)
+. .+.++++|+++. +.+....-..+..+..|+.|+++++ .+....+.... .+++|+.|+++++ .++ ...
T Consensus 265 Fy----~l~kme~l~L~~-N~l~~vn~g~lfgLt~L~~L~lS~N-aI~rih~d~Ws-ftqkL~~LdLs~N-~i~~l~~~s 336 (873)
T KOG4194|consen 265 FY----GLEKMEHLNLET-NRLQAVNEGWLFGLTSLEQLDLSYN-AIQRIHIDSWS-FTQKLKELDLSSN-RITRLDEGS 336 (873)
T ss_pred ee----eecccceeeccc-chhhhhhcccccccchhhhhccchh-hhheeecchhh-hcccceeEecccc-ccccCChhH
Confidence 11 233444444444 3333333333334444444444443 22222222221 3455555555543 222 222
Q ss_pred HHHHHhcCccCceecccccCCCChHHHHHhhCCCCCCEEecCCCccccH--HHHHHHHhcCCccCEeeccccCCCCHHHH
Q 007252 441 LAALSNGCKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITS--AGLTALAAGCKRLADLDLKHCAKIDDSGF 518 (611)
Q Consensus 441 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~c~~l~~--~~~~~~~~~~~~L~~L~l~~c~~l~~~~~ 518 (611)
+.. +..|++|.|++ +.++...-..+..+.+|++|++++ +.+.- +.-.....++++|+.|.+.|| ++.....
T Consensus 337 f~~----L~~Le~LnLs~-Nsi~~l~e~af~~lssL~~LdLr~-N~ls~~IEDaa~~f~gl~~LrkL~l~gN-qlk~I~k 409 (873)
T KOG4194|consen 337 FRV----LSQLEELNLSH-NSIDHLAEGAFVGLSSLHKLDLRS-NELSWCIEDAAVAFNGLPSLRKLRLTGN-QLKSIPK 409 (873)
T ss_pred HHH----HHHhhhhcccc-cchHHHHhhHHHHhhhhhhhcCcC-CeEEEEEecchhhhccchhhhheeecCc-eeeecch
Confidence 222 24555555555 344433333344455556666555 23310 011112234566666666666 5554444
Q ss_pred HHHHhhCCCCCEEEeccCCCChhHHHHHhcccccccccee
Q 007252 519 WALAYYSQNLRQINLSYCALSDMALCMVMGNMTRLQDAKL 558 (611)
Q Consensus 519 ~~~~~~~~~L~~L~l~~~~l~~~~~~~~l~~~~~L~~l~l 558 (611)
+++.. +++|++|++.+|.|..... .+|..+ .|++|.+
T Consensus 410 rAfsg-l~~LE~LdL~~NaiaSIq~-nAFe~m-~Lk~Lv~ 446 (873)
T KOG4194|consen 410 RAFSG-LEALEHLDLGDNAIASIQP-NAFEPM-ELKELVM 446 (873)
T ss_pred hhhcc-CcccceecCCCCcceeecc-cccccc-hhhhhhh
Confidence 44433 3666666666666555554 555554 5555544
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.82 E-value=6.6e-22 Score=186.74 Aligned_cols=350 Identities=18% Similarity=0.160 Sum_probs=211.1
Q ss_pred cCcEEeccCcccChHHHHHhhhcCCCcEEEecCCCCCChhHHHHHHhcCCCccEEEeccccccChHHHHHHHhcCCCCce
Q 007252 200 DLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQ 279 (611)
Q Consensus 200 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~ 279 (611)
.-+.|++++|.+.+..+..+.++|+|+.+++..+. ++ .++.+.....+|+.|++..+. ++... .+..+..+.|+.
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~-Lt--~IP~f~~~sghl~~L~L~~N~-I~sv~-se~L~~l~alrs 153 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNE-LT--RIPRFGHESGHLEKLDLRHNL-ISSVT-SEELSALPALRS 153 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccch-hh--hcccccccccceeEEeeeccc-ccccc-HHHHHhHhhhhh
Confidence 34455565555555555555556666666555421 21 122233323455566555522 11111 111223455666
Q ss_pred eccCCCCCccchhHHHHhhcCCCccEEEccCcccChHHHHHHHHhCCCCcEEeeccCCCCCC----CCCCCCCcEEecCC
Q 007252 280 LDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTN----TDSCRGLVCLKIES 355 (611)
Q Consensus 280 L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~L~~L~l~~ 355 (611)
|+++.+. ++......+..-.++++|.+.++.++......+. .+.+|..|.++.+.--+- +.++|+|++|++..
T Consensus 154 lDLSrN~--is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~-~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnr 230 (873)
T KOG4194|consen 154 LDLSRNL--ISEIPKPSFPAKVNIKKLNLASNRITTLETGHFD-SLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNR 230 (873)
T ss_pred hhhhhch--hhcccCCCCCCCCCceEEeecccccccccccccc-ccchheeeecccCcccccCHHHhhhcchhhhhhccc
Confidence 6655442 2222233344444666666666665554433333 344566666655421111 55667777777765
Q ss_pred CccCChhHHHHHHhccCCCcEEecCCCCCCChhhhhhhccCCCceEEEecCCCCCChHhHHHHHhcCCCCcEEeccCCCC
Q 007252 356 CNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSG 435 (611)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~ 435 (611)
+. +.-..... ++.+++|+.|.+.. +++....-..+-.+.++++|++..+ .+....-..+. .+..|+.|+++++ .
T Consensus 231 N~-irive~lt-FqgL~Sl~nlklqr-N~I~kL~DG~Fy~l~kme~l~L~~N-~l~~vn~g~lf-gLt~L~~L~lS~N-a 304 (873)
T KOG4194|consen 231 NR-IRIVEGLT-FQGLPSLQNLKLQR-NDISKLDDGAFYGLEKMEHLNLETN-RLQAVNEGWLF-GLTSLEQLDLSYN-A 304 (873)
T ss_pred cc-eeeehhhh-hcCchhhhhhhhhh-cCcccccCcceeeecccceeecccc-hhhhhhccccc-ccchhhhhccchh-h
Confidence 33 32221222 23678999999988 6766554455667889999999886 55443333333 6788999999984 4
Q ss_pred CCHHHHHHHHhcCccCceecccccCCCChHHHHHhhCCCCCCEEecCCCccccHHHHHHHHhcCCccCEeeccccCCC--
Q 007252 436 IGDDGLAALSNGCKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKI-- 513 (611)
Q Consensus 436 ~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l-- 513 (611)
+....+..+ ..+++|++|+|++ +.++......+..+..|++|++++ +.++...-. .+.++++|++|++.+| .+
T Consensus 305 I~rih~d~W-sftqkL~~LdLs~-N~i~~l~~~sf~~L~~Le~LnLs~-Nsi~~l~e~-af~~lssL~~LdLr~N-~ls~ 379 (873)
T KOG4194|consen 305 IQRIHIDSW-SFTQKLKELDLSS-NRITRLDEGSFRVLSQLEELNLSH-NSIDHLAEG-AFVGLSSLHKLDLRSN-ELSW 379 (873)
T ss_pred hheeecchh-hhcccceeEeccc-cccccCChhHHHHHHHhhhhcccc-cchHHHHhh-HHHHhhhhhhhcCcCC-eEEE
Confidence 443333333 3479999999999 678877777777788999999998 566543322 2345889999999998 44
Q ss_pred --CHHHHHHHHhhCCCCCEEEeccCCCChhHHHHHhccccccccceeeccc--CCCHHHHHH
Q 007252 514 --DDSGFWALAYYSQNLRQINLSYCALSDMALCMVMGNMTRLQDAKLVHLT--NCTREGFEL 571 (611)
Q Consensus 514 --~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~l~~~~~L~~l~l~~~~--~~~~~~~~~ 571 (611)
.| +-.++ ..+++|+.|.+.+|.+...+- ++|..+++|++|++.+.. .+..+.++.
T Consensus 380 ~IED-aa~~f-~gl~~LrkL~l~gNqlk~I~k-rAfsgl~~LE~LdL~~NaiaSIq~nAFe~ 438 (873)
T KOG4194|consen 380 CIED-AAVAF-NGLPSLRKLRLTGNQLKSIPK-RAFSGLEALEHLDLGDNAIASIQPNAFEP 438 (873)
T ss_pred EEec-chhhh-ccchhhhheeecCceeeecch-hhhccCcccceecCCCCcceeeccccccc
Confidence 23 22223 337999999999999888887 899999999999997764 234444443
No 8
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.68 E-value=5.6e-15 Score=143.21 Aligned_cols=166 Identities=28% Similarity=0.376 Sum_probs=90.2
Q ss_pred CCCcEEecCCCCCCChhhhhh----hccC-CCceEEEecCCCCCChHhHHHH---HhcCCCCcEEeccCCCCCCHHHHHH
Q 007252 372 LRLEEIDLTDCNGVNDKGLEY----LSRC-SELLFLKLGLCENISDKGLFYI---ASNCLRIQGLDLYKCSGIGDDGLAA 443 (611)
Q Consensus 372 ~~L~~L~l~~~~~~~~~~~~~----l~~~-~~L~~L~l~~~~~~~~~~~~~l---~~~~~~L~~L~l~~~~~~~~~~~~~ 443 (611)
++|++|++++ +.+++.+... +..+ ++|+.|++++| .++..+...+ ...+++|++|++++| .+++.++..
T Consensus 108 ~~L~~L~ls~-~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~ 184 (319)
T cd00116 108 SSLQELKLNN-NGLGDRGLRLLAKGLKDLPPALEKLVLGRN-RLEGASCEALAKALRANRDLKELNLANN-GIGDAGIRA 184 (319)
T ss_pred CcccEEEeeC-CccchHHHHHHHHHHHhCCCCceEEEcCCC-cCCchHHHHHHHHHHhCCCcCEEECcCC-CCchHHHHH
Confidence 4477777766 3454433322 2344 66677777766 4443333222 224456777777765 455444444
Q ss_pred HHh---cCccCceecccccCCCChHHHHH----hhCCCCCCEEecCCCccccHHHHHHHHhcC----CccCEeeccccCC
Q 007252 444 LSN---GCKKLKKLNLSYCVNVTDRGMEH----IRFIEDLSDLELRGLTKITSAGLTALAAGC----KRLADLDLKHCAK 512 (611)
Q Consensus 444 ~~~---~~~~L~~L~l~~c~~l~~~~~~~----l~~~~~L~~L~l~~c~~l~~~~~~~~~~~~----~~L~~L~l~~c~~ 512 (611)
+.. .+++|++|++++| .+++.+... +..+++|++|++++| .+++.++..+...+ +.|+.|++++| .
T Consensus 185 l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~~~~~~~L~~L~ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~l~~n-~ 261 (319)
T cd00116 185 LAEGLKANCNLEVLDLNNN-GLTDEGASALAETLASLKSLEVLNLGDN-NLTDAGAAALASALLSPNISLLTLSLSCN-D 261 (319)
T ss_pred HHHHHHhCCCCCEEeccCC-ccChHHHHHHHHHhcccCCCCEEecCCC-cCchHHHHHHHHHHhccCCCceEEEccCC-C
Confidence 332 2346777777664 455444332 334666777777764 45555555544433 56777777777 6
Q ss_pred CCHHHHHHHHhh---CCCCCEEEeccCCCChhHH
Q 007252 513 IDDSGFWALAYY---SQNLRQINLSYCALSDMAL 543 (611)
Q Consensus 513 l~~~~~~~~~~~---~~~L~~L~l~~~~l~~~~~ 543 (611)
+++.+...+... +++|+++++++|.+++.+.
T Consensus 262 i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~ 295 (319)
T cd00116 262 ITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGA 295 (319)
T ss_pred CCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHH
Confidence 654444333322 3466777777777665543
No 9
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=1.6e-16 Score=138.24 Aligned_cols=182 Identities=23% Similarity=0.298 Sum_probs=97.0
Q ss_pred CccEEEccCcccChHHHHHHHHhCCCCcEEeeccCCCCCC----CCCCCCCcEEecCCCccCChhHHHHHHhccCCCcEE
Q 007252 302 NLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTN----TDSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEI 377 (611)
Q Consensus 302 ~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 377 (611)
+|+.++++...++...+..+...|.+|+.|.+.+...-.. +....+|+.|+++.|..++..+...+...|..|.+|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 4666666666666666666666666666666655421111 334455666666666666666666666677777777
Q ss_pred ecCCCCCCChhhhhhhcc-CCCceEEEecCCC-CCChHhHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhcCccCceec
Q 007252 378 DLTDCNGVNDKGLEYLSR-CSELLFLKLGLCE-NISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKKLKKLN 455 (611)
Q Consensus 378 ~l~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~-~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 455 (611)
++++|...++.....+.. -++|+.|+++++. .+....+..+++.||+|.+|++++|..+++..+..+.+ ++.|++|.
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~k-f~~L~~lS 344 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFK-FNYLQHLS 344 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHh-cchheeee
Confidence 777764444432222221 3455555555542 22333444444555555555555555555544444433 45555555
Q ss_pred ccccCCCChHHHHHhhCCCCCCEEecCCC
Q 007252 456 LSYCVNVTDRGMEHIRFIEDLSDLELRGL 484 (611)
Q Consensus 456 l~~c~~l~~~~~~~l~~~~~L~~L~l~~c 484 (611)
++.|..+....+-.+...|.|.+|++.||
T Consensus 345 lsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 345 LSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 55555555544444445555555555554
No 10
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.62 E-value=9.8e-14 Score=134.50 Aligned_cols=160 Identities=28% Similarity=0.300 Sum_probs=90.2
Q ss_pred CCCcEEecCCCCCCChhhh----hhhccCCCceEEEecCCCCCChHhHHHHHh---cCCCCcEEeccCCCCCCHHHHHHH
Q 007252 372 LRLEEIDLTDCNGVNDKGL----EYLSRCSELLFLKLGLCENISDKGLFYIAS---NCLRIQGLDLYKCSGIGDDGLAAL 444 (611)
Q Consensus 372 ~~L~~L~l~~~~~~~~~~~----~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~---~~~~L~~L~l~~~~~~~~~~~~~~ 444 (611)
++|++|++++ +.++..+. ..+..+++|++|++++| .+++.++..+.. .+++|++|++++| .+++.+...+
T Consensus 137 ~~L~~L~L~~-n~l~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l 213 (319)
T cd00116 137 PALEKLVLGR-NRLEGASCEALAKALRANRDLKELNLANN-GIGDAGIRALAEGLKANCNLEVLDLNNN-GLTDEGASAL 213 (319)
T ss_pred CCceEEEcCC-CcCCchHHHHHHHHHHhCCCcCEEECcCC-CCchHHHHHHHHHHHhCCCCCEEeccCC-ccChHHHHHH
Confidence 5566666665 33442222 22334556666666665 555544444432 2347777777765 4554444332
Q ss_pred ---HhcCccCceecccccCCCChHHHHHhhC-----CCCCCEEecCCCccccHHHHHH---HHhcCCccCEeeccccCCC
Q 007252 445 ---SNGCKKLKKLNLSYCVNVTDRGMEHIRF-----IEDLSDLELRGLTKITSAGLTA---LAAGCKRLADLDLKHCAKI 513 (611)
Q Consensus 445 ---~~~~~~L~~L~l~~c~~l~~~~~~~l~~-----~~~L~~L~l~~c~~l~~~~~~~---~~~~~~~L~~L~l~~c~~l 513 (611)
...+++|++|++++| .+++.++..+.. .+.|++|++.+| .+++.+... ....+++|+.+++++| .+
T Consensus 214 ~~~~~~~~~L~~L~ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~l~~n-~i~~~~~~~l~~~~~~~~~L~~l~l~~N-~l 290 (319)
T cd00116 214 AETLASLKSLEVLNLGDN-NLTDAGAAALASALLSPNISLLTLSLSCN-DITDDGAKDLAEVLAEKESLLELDLRGN-KF 290 (319)
T ss_pred HHHhcccCCCCEEecCCC-cCchHHHHHHHHHHhccCCCceEEEccCC-CCCcHHHHHHHHHHhcCCCccEEECCCC-CC
Confidence 334567777777774 466555544432 367888888775 565433332 2334567888888888 77
Q ss_pred CHHHHHHHHhh---C-CCCCEEEeccCC
Q 007252 514 DDSGFWALAYY---S-QNLRQINLSYCA 537 (611)
Q Consensus 514 ~~~~~~~~~~~---~-~~L~~L~l~~~~ 537 (611)
++.+...++.. . +.|+++++..++
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 291 GEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred cHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 76655444422 2 467777776664
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.59 E-value=1.2e-14 Score=162.22 Aligned_cols=344 Identities=18% Similarity=0.169 Sum_probs=192.8
Q ss_pred HHhhcCCCCcEEeccCCC--C---CChHHHHHHHhcCCccceeecccccccChHHHHHHHHcCCcCcEEeccCcccChHH
Q 007252 141 AALSFASGLKEVKLDKCL--N---VTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDS 215 (611)
Q Consensus 141 ~~l~~~~~L~~L~l~~~~--~---~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~ 215 (611)
.++..+++|+.|.+.... . ........+..-.++|+.|.+.+++ +..... .+ ...+|+.|++.++.+.. .
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~-l~~lP~-~f--~~~~L~~L~L~~s~l~~-L 626 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYP-LRCMPS-NF--RPENLVKLQMQGSKLEK-L 626 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCC-CCCCCC-cC--CccCCcEEECcCccccc-c
Confidence 456667777777775421 0 0000001111112357777776642 111110 01 24678888887775543 1
Q ss_pred HHHhhhcCCCcEEEecCCCCCChhHHHHHHhcCCCccEEEeccccccChHHHHHHHhcCCCCceeccCCCCCccchhHHH
Q 007252 216 FCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLH 295 (611)
Q Consensus 216 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 295 (611)
...+..+++|+.|+++++..+... +.+.. +++|+.|++.+|.... .++..+..+++|+.|++.+|.. +....
T Consensus 627 ~~~~~~l~~Lk~L~Ls~~~~l~~i--p~ls~-l~~Le~L~L~~c~~L~--~lp~si~~L~~L~~L~L~~c~~-L~~Lp-- 698 (1153)
T PLN03210 627 WDGVHSLTGLRNIDLRGSKNLKEI--PDLSM-ATNLETLKLSDCSSLV--ELPSSIQYLNKLEDLDMSRCEN-LEILP-- 698 (1153)
T ss_pred ccccccCCCCCEEECCCCCCcCcC--Ccccc-CCcccEEEecCCCCcc--ccchhhhccCCCCEEeCCCCCC-cCccC--
Confidence 233556778888888765543322 12333 6788888888765543 2344556677888888877754 22211
Q ss_pred HhhcCCCccEEEccCcccChHHHHHHHHhCCCCcEEeeccCCCCCC---CCCCCCCcEEecCCCccCC--h--hHH-HHH
Q 007252 296 HMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTN---TDSCRGLVCLKIESCNMIT--E--KGL-YQL 367 (611)
Q Consensus 296 ~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~L~~L~l~~~~~~~--~--~~~-~~~ 367 (611)
....+++|+.|.+++|.... .+.....+|++|+++++. +.. ...+++|++|.+.++.... . ..+ ...
T Consensus 699 ~~i~l~sL~~L~Lsgc~~L~----~~p~~~~nL~~L~L~~n~-i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~ 773 (1153)
T PLN03210 699 TGINLKSLYRLNLSGCSRLK----SFPDISTNISWLDLDETA-IEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLM 773 (1153)
T ss_pred CcCCCCCCCEEeCCCCCCcc----ccccccCCcCeeecCCCc-cccccccccccccccccccccchhhccccccccchhh
Confidence 11156678888887764321 111124577777777654 222 2245667777666532100 0 000 011
Q ss_pred HhccCCCcEEecCCCCCCChhhhhhhccCCCceEEEecCCCCCChHhHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhc
Q 007252 368 GSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNG 447 (611)
Q Consensus 368 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 447 (611)
...+++|+.|+++++..+.. ....+..+++|+.|++++|..+...... ..+++|++|++++|..+.. +...
T Consensus 774 ~~~~~sL~~L~Ls~n~~l~~-lP~si~~L~~L~~L~Ls~C~~L~~LP~~---~~L~sL~~L~Ls~c~~L~~-----~p~~ 844 (1153)
T PLN03210 774 TMLSPSLTRLFLSDIPSLVE-LPSSIQNLHKLEHLEIENCINLETLPTG---INLESLESLDLSGCSRLRT-----FPDI 844 (1153)
T ss_pred hhccccchheeCCCCCCccc-cChhhhCCCCCCEEECCCCCCcCeeCCC---CCccccCEEECCCCCcccc-----cccc
Confidence 11346788888887543332 2344667888888888887655432111 1467888888888866542 1122
Q ss_pred CccCceecccccCCCChHHHHHhhCCCCCCEEecCCCccccHHHHHHHHhcCCccCEeeccccCCCCH
Q 007252 448 CKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDD 515 (611)
Q Consensus 448 ~~~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 515 (611)
.++|+.|++++ +.++.. ...+..+++|+.|++.+|+++..... ....+++|+.+++++|..++.
T Consensus 845 ~~nL~~L~Ls~-n~i~~i-P~si~~l~~L~~L~L~~C~~L~~l~~--~~~~L~~L~~L~l~~C~~L~~ 908 (1153)
T PLN03210 845 STNISDLNLSR-TGIEEV-PWWIEKFSNLSFLDMNGCNNLQRVSL--NISKLKHLETVDFSDCGALTE 908 (1153)
T ss_pred ccccCEeECCC-CCCccC-hHHHhcCCCCCEEECCCCCCcCccCc--ccccccCCCeeecCCCccccc
Confidence 46788888877 456543 23466788888888888887765322 233577888888888876653
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.58 E-value=1.2e-14 Score=162.07 Aligned_cols=289 Identities=16% Similarity=0.228 Sum_probs=151.8
Q ss_pred CCCccEEEeccccccChHHHHHHHhcCCCCceeccCCCCCccchhHHHHhhcCCCccEEEccCcccChHHHHHHHHhCCC
Q 007252 248 CPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKS 327 (611)
Q Consensus 248 ~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~ 327 (611)
..+|+.|++.++.. . .+......+++|+.|+++++.. +.. ...+..+++|+.|++.+|..... +......+++
T Consensus 610 ~~~L~~L~L~~s~l-~--~L~~~~~~l~~Lk~L~Ls~~~~-l~~--ip~ls~l~~Le~L~L~~c~~L~~-lp~si~~L~~ 682 (1153)
T PLN03210 610 PENLVKLQMQGSKL-E--KLWDGVHSLTGLRNIDLRGSKN-LKE--IPDLSMATNLETLKLSDCSSLVE-LPSSIQYLNK 682 (1153)
T ss_pred ccCCcEEECcCccc-c--ccccccccCCCCCEEECCCCCC-cCc--CCccccCCcccEEEecCCCCccc-cchhhhccCC
Confidence 35666666665321 1 1112234456667776665532 111 12345566777777766532211 1111225667
Q ss_pred CcEEeeccCCCCCC---CCCCCCCcEEecCCCccCChhHHHHHHhccCCCcEEecCCCCCCChhhhhhhccCCCceEEEe
Q 007252 328 LVEIGLSKCLGVTN---TDSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKL 404 (611)
Q Consensus 328 L~~L~l~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l 404 (611)
|+.|++++|..+.. ...+++|+.|++++|..+.. +....++|+.|++++ +.+... .....+++|++|.+
T Consensus 683 L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~-----~p~~~~nL~~L~L~~-n~i~~l--P~~~~l~~L~~L~l 754 (1153)
T PLN03210 683 LEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKS-----FPDISTNISWLDLDE-TAIEEF--PSNLRLENLDELIL 754 (1153)
T ss_pred CCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccc-----cccccCCcCeeecCC-Cccccc--cccccccccccccc
Confidence 77777777665554 22466777777777654422 111235677777776 344321 11124566666666
Q ss_pred cCCCCCC--h--HhH-HHHHhcCCCCcEEeccCCCCCCHHHHHHHHhcCccCceecccccCCCChHHHHHhhCCCCCCEE
Q 007252 405 GLCENIS--D--KGL-FYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDL 479 (611)
Q Consensus 405 ~~~~~~~--~--~~~-~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L 479 (611)
.++.... . ..+ ......+++|+.|++++|+.+.. +.....++++|+.|++++|..+...... ..+++|+.|
T Consensus 755 ~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~--lP~si~~L~~L~~L~Ls~C~~L~~LP~~--~~L~sL~~L 830 (1153)
T PLN03210 755 CEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVE--LPSSIQNLHKLEHLEIENCINLETLPTG--INLESLESL 830 (1153)
T ss_pred cccchhhccccccccchhhhhccccchheeCCCCCCccc--cChhhhCCCCCCEEECCCCCCcCeeCCC--CCccccCEE
Confidence 5532100 0 000 00111346777777777654432 2222345677777777777665532211 146777777
Q ss_pred ecCCCccccHHHHHHHHhcCCccCEeeccccCCCCHHHHHHHHhhCCCCCEEEeccCC-CChhHHHHHhcccccccccee
Q 007252 480 ELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQNLRQINLSYCA-LSDMALCMVMGNMTRLQDAKL 558 (611)
Q Consensus 480 ~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~~l~~~~~L~~l~l 558 (611)
++++|..+... ....++|+.|+++++ .++..+ .-...+++|+.|++++|+ +..... .+..+++|+.+++
T Consensus 831 ~Ls~c~~L~~~-----p~~~~nL~~L~Ls~n-~i~~iP--~si~~l~~L~~L~L~~C~~L~~l~~--~~~~L~~L~~L~l 900 (1153)
T PLN03210 831 DLSGCSRLRTF-----PDISTNISDLNLSRT-GIEEVP--WWIEKFSNLSFLDMNGCNNLQRVSL--NISKLKHLETVDF 900 (1153)
T ss_pred ECCCCCccccc-----cccccccCEeECCCC-CCccCh--HHHhcCCCCCEEECCCCCCcCccCc--ccccccCCCeeec
Confidence 77777665421 122356777777777 555422 222345777777777766 444332 3455667777777
Q ss_pred ecccCCC
Q 007252 559 VHLTNCT 565 (611)
Q Consensus 559 ~~~~~~~ 565 (611)
.+|.+++
T Consensus 901 ~~C~~L~ 907 (1153)
T PLN03210 901 SDCGALT 907 (1153)
T ss_pred CCCcccc
Confidence 7776554
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.56 E-value=2.4e-16 Score=157.68 Aligned_cols=241 Identities=20% Similarity=0.166 Sum_probs=122.3
Q ss_pred CCCceeccCCCCCccchhHHHHhhcCCCccEEEccCcccChHHHHHHHHhCCCCcEEeeccCC--CCCC-CCCCCCCcEE
Q 007252 275 SGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCL--GVTN-TDSCRGLVCL 351 (611)
Q Consensus 275 ~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~--~~~~-~~~~~~L~~L 351 (611)
.+|+.++++.+.. ......+..+++|+.+....+.+........ ...+|+.|.+..+. .+.. ....+.|++|
T Consensus 241 ~nl~~~dis~n~l---~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~--~~~~L~~l~~~~nel~yip~~le~~~sL~tL 315 (1081)
T KOG0618|consen 241 LNLQYLDISHNNL---SNLPEWIGACANLEALNANHNRLVALPLRIS--RITSLVSLSAAYNELEYIPPFLEGLKSLRTL 315 (1081)
T ss_pred ccceeeecchhhh---hcchHHHHhcccceEecccchhHHhhHHHHh--hhhhHHHHHhhhhhhhhCCCcccccceeeee
Confidence 4677777765522 2233777778888888887776633222211 34455555555542 1111 4446667777
Q ss_pred ecCCCccCChhHHHHHHhcc-CCCcEEecCCCCCCChhhhhhhccCCCceEEEecCCCCCChHhHHHHHhcCCCCcEEec
Q 007252 352 KIESCNMITEKGLYQLGSFC-LRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDL 430 (611)
Q Consensus 352 ~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l 430 (611)
++..+. +....-..+. .. ..|+.|..+. +.+....-..=..++.|+.|.+.++ .++|..+..+. ++++|+.|++
T Consensus 316 dL~~N~-L~~lp~~~l~-v~~~~l~~ln~s~-n~l~~lp~~~e~~~~~Lq~LylanN-~Ltd~c~p~l~-~~~hLKVLhL 390 (1081)
T KOG0618|consen 316 DLQSNN-LPSLPDNFLA-VLNASLNTLNVSS-NKLSTLPSYEENNHAALQELYLANN-HLTDSCFPVLV-NFKHLKVLHL 390 (1081)
T ss_pred eehhcc-ccccchHHHh-hhhHHHHHHhhhh-ccccccccccchhhHHHHHHHHhcC-cccccchhhhc-cccceeeeee
Confidence 776532 2211111110 11 1233333332 2221111000012345666666654 56655555444 5677777777
Q ss_pred cCC--CCCCHHHHHHHHhcCccCceecccccCCCChHHHHHhhCCCCCCEEecCCCccccHHHHHHHHhcCCccCEeecc
Q 007252 431 YKC--SGIGDDGLAALSNGCKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLK 508 (611)
Q Consensus 431 ~~~--~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~ 508 (611)
+++ +.+.+..+. .++.|++|++++ +.++... ..+..++.|++|...+ +.+.... .++ .++.|+.+|++
T Consensus 391 syNrL~~fpas~~~----kle~LeeL~LSG-NkL~~Lp-~tva~~~~L~tL~ahs-N~l~~fP--e~~-~l~qL~~lDlS 460 (1081)
T KOG0618|consen 391 SYNRLNSFPASKLR----KLEELEELNLSG-NKLTTLP-DTVANLGRLHTLRAHS-NQLLSFP--ELA-QLPQLKVLDLS 460 (1081)
T ss_pred cccccccCCHHHHh----chHHhHHHhccc-chhhhhh-HHHHhhhhhHHHhhcC-Cceeech--hhh-hcCcceEEecc
Confidence 764 223333332 346677777776 4555444 4455666666666655 3343222 333 36677777777
Q ss_pred ccCCCCHHHHHHHHhhCCCCCEEEeccCC
Q 007252 509 HCAKIDDSGFWALAYYSQNLRQINLSYCA 537 (611)
Q Consensus 509 ~c~~l~~~~~~~~~~~~~~L~~L~l~~~~ 537 (611)
.| .++...+...... |+|++|+++||.
T Consensus 461 ~N-~L~~~~l~~~~p~-p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 461 CN-NLSEVTLPEALPS-PNLKYLDLSGNT 487 (1081)
T ss_pred cc-hhhhhhhhhhCCC-cccceeeccCCc
Confidence 66 6665544443333 677777777776
No 14
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.53 E-value=1.1e-13 Score=142.90 Aligned_cols=262 Identities=32% Similarity=0.514 Sum_probs=141.3
Q ss_pred HHHHHHhcCCccceeecccccccChHHHHHHHHcCCcCcEEeccCc--ccChHH---HHHhhhcCCCcEEEecCCCCCCh
Q 007252 164 GLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYL--KLTNDS---FCSIATLAKLESLVMVGCPCVDD 238 (611)
Q Consensus 164 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~--~~~~~~---~~~l~~~~~L~~L~l~~~~~~~~ 238 (611)
....+...+++|+.+.+.++..+++.++..+...+++|+.|+++++ .+.... ......+++|+.|++..|..+++
T Consensus 179 ~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd 258 (482)
T KOG1947|consen 179 ILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTD 258 (482)
T ss_pred HHHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCc
Confidence 3444444467777777776666666556666666677777776652 111111 11223357777777777666777
Q ss_pred hHHHHHHhcCCCccEEEeccccccChHHHHHHHhcCCCCceeccCCCCCccchhHHHHhhcCCCccEEEccCcccChHHH
Q 007252 239 TGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCF 318 (611)
Q Consensus 239 ~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l 318 (611)
.++..++..|++|+.|.+.+|..+++.++..+...+++|++|++.+|.. + ++.++
T Consensus 259 ~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~-~------------------------~d~~l 313 (482)
T KOG1947|consen 259 IGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG-L------------------------TDSGL 313 (482)
T ss_pred hhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc-c------------------------hHHHH
Confidence 7777777777777777777777677777777777777777777776654 2 33334
Q ss_pred HHHHHhCCCCcEEeeccCCCCCCCCCCCCCcEEecCCCccCC-hhHHHHHHhccCCCcEEecCCCCCCChhhhhhhccCC
Q 007252 319 QTISFNCKSLVEIGLSKCLGVTNTDSCRGLVCLKIESCNMIT-EKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCS 397 (611)
Q Consensus 319 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 397 (611)
..+...+++++.|.+..+. .|+.++.+.+.++.... +.........+++++.+.+..+. ..+.+.
T Consensus 314 ~~~~~~c~~l~~l~~~~~~------~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~~------- 379 (482)
T KOG1947|consen 314 EALLKNCPNLRELKLLSLN------GCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG-ISDLGL------- 379 (482)
T ss_pred HHHHHhCcchhhhhhhhcC------CCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh-ccCcch-------
Confidence 4444445555554433321 13334444444333333 23334444455666666665543 333332
Q ss_pred CceEEEecCCCCCChHhHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhcCccCceecccccCCCChHHHH
Q 007252 398 ELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKKLKKLNLSYCVNVTDRGME 468 (611)
Q Consensus 398 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~ 468 (611)
.+.+.+|+.++ .++......+.+++.|.++.|..+++..+......+.+++.+++.+|..++.....
T Consensus 380 ---~~~l~gc~~l~-~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~ 446 (482)
T KOG1947|consen 380 ---ELSLRGCPNLT-ESLELRLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLKSLE 446 (482)
T ss_pred ---HHHhcCCcccc-hHHHHHhccCCccceEecccCccccccchHHHhhhhhccccCCccCcccccchhhh
Confidence 12223333333 33333332333356666666655555555554443455555555555555544443
No 15
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.53 E-value=1.6e-16 Score=152.08 Aligned_cols=368 Identities=14% Similarity=0.100 Sum_probs=166.9
Q ss_pred CCCcEEeccCCCCCChHHHHHHHhcCCccceeecccccccChHHHHHHHHcCCcCcEEeccCcccChHHHHHhhhcCCCc
Q 007252 147 SGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATLAKLE 226 (611)
Q Consensus 147 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 226 (611)
+-.+-.++++ +.++...++.-...+.+++.|.+... .+. .+..-...+.+|+.|.+.+|.+... ...++.+|.|+
T Consensus 7 pFVrGvDfsg-NDFsg~~FP~~v~qMt~~~WLkLnrt-~L~--~vPeEL~~lqkLEHLs~~HN~L~~v-hGELs~Lp~LR 81 (1255)
T KOG0444|consen 7 PFVRGVDFSG-NDFSGDRFPHDVEQMTQMTWLKLNRT-KLE--QVPEELSRLQKLEHLSMAHNQLISV-HGELSDLPRLR 81 (1255)
T ss_pred ceeecccccC-CcCCCCcCchhHHHhhheeEEEechh-hhh--hChHHHHHHhhhhhhhhhhhhhHhh-hhhhccchhhH
Confidence 4555666666 33332222222333666777766543 111 1112223456666666666643221 23355566777
Q ss_pred EEEecCCCCCChhH-HHHHHhcCCCccEEEeccccccChHHHHHHHhcCCCCceeccCCCCCccchhHHHHhhcCCCccE
Q 007252 227 SLVMVGCPCVDDTG-LRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEA 305 (611)
Q Consensus 227 ~L~l~~~~~~~~~~-~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~ 305 (611)
.+.+..+. +...+ +..+.+ +..|..|+++.+.. ...+.-.....++-.|+++++. +....-..+.++..|-.
T Consensus 82 sv~~R~N~-LKnsGiP~diF~-l~dLt~lDLShNqL---~EvP~~LE~AKn~iVLNLS~N~--IetIPn~lfinLtDLLf 154 (1255)
T KOG0444|consen 82 SVIVRDNN-LKNSGIPTDIFR-LKDLTILDLSHNQL---REVPTNLEYAKNSIVLNLSYNN--IETIPNSLFINLTDLLF 154 (1255)
T ss_pred HHhhhccc-cccCCCCchhcc-cccceeeecchhhh---hhcchhhhhhcCcEEEEcccCc--cccCCchHHHhhHhHhh
Confidence 76666533 33322 233444 66666666665321 1112222333455556655553 22222233334444445
Q ss_pred EEccCcccChHHHHHHHHhCCCCcEEeeccCCCCCCCCCCCCCcEEecCCCccCChhHHHHHHhccCCCcEEecCCCCCC
Q 007252 306 ITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTDSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGV 385 (611)
Q Consensus 306 L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 385 (611)
|+++++.+.. ++.- ..++..|++|.+++++ +....+..+. .+.+|+.|++++....
T Consensus 155 LDLS~NrLe~--LPPQ--------------------~RRL~~LqtL~Ls~NP-L~hfQLrQLP-smtsL~vLhms~TqRT 210 (1255)
T KOG0444|consen 155 LDLSNNRLEM--LPPQ--------------------IRRLSMLQTLKLSNNP-LNHFQLRQLP-SMTSLSVLHMSNTQRT 210 (1255)
T ss_pred hccccchhhh--cCHH--------------------HHHHhhhhhhhcCCCh-hhHHHHhcCc-cchhhhhhhcccccch
Confidence 5555554321 1111 2233344444444433 1111222222 3344555555552222
Q ss_pred ChhhhhhhccCCCceEEEecCCCCCChHhHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhcCccCceecccccCCCChH
Q 007252 386 NDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKKLKKLNLSYCVNVTDR 465 (611)
Q Consensus 386 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~ 465 (611)
.+.....+-.+.+|..++++.+ +++- ....+. .+++|+.|+++++ .++..... ...+.+|+.|+++. ++++..
T Consensus 211 l~N~Ptsld~l~NL~dvDlS~N-~Lp~-vPecly-~l~~LrrLNLS~N-~iteL~~~--~~~W~~lEtLNlSr-NQLt~L 283 (1255)
T KOG0444|consen 211 LDNIPTSLDDLHNLRDVDLSEN-NLPI-VPECLY-KLRNLRRLNLSGN-KITELNMT--EGEWENLETLNLSR-NQLTVL 283 (1255)
T ss_pred hhcCCCchhhhhhhhhcccccc-CCCc-chHHHh-hhhhhheeccCcC-ceeeeecc--HHHHhhhhhhcccc-chhccc
Confidence 2222233444556666666554 2221 111111 4566666666663 44422111 11235666666666 444432
Q ss_pred HHHHhhCCCCCCEEecCCCccccHHHHHHHHhcCCccCEeeccccCCCCHHHHHHHHhhCCCCCEEEeccCCCChhHHHH
Q 007252 466 GMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQNLRQINLSYCALSDMALCM 545 (611)
Q Consensus 466 ~~~~l~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~ 545 (611)
..++.++++|+.|.+.+ ++++-+++.+-...+..|+.+..++| ++... ......|+.|+.|.++.|.+-..+ +
T Consensus 284 -P~avcKL~kL~kLy~n~-NkL~FeGiPSGIGKL~~Levf~aanN-~LElV--PEglcRC~kL~kL~L~~NrLiTLP--e 356 (1255)
T KOG0444|consen 284 -PDAVCKLTKLTKLYANN-NKLTFEGIPSGIGKLIQLEVFHAANN-KLELV--PEGLCRCVKLQKLKLDHNRLITLP--E 356 (1255)
T ss_pred -hHHHhhhHHHHHHHhcc-CcccccCCccchhhhhhhHHHHhhcc-ccccC--chhhhhhHHHHHhcccccceeech--h
Confidence 23455666666666655 55655555555555556666666655 43221 112223466666666666632222 3
Q ss_pred HhccccccccceeecccCC
Q 007252 546 VMGNMTRLQDAKLVHLTNC 564 (611)
Q Consensus 546 ~l~~~~~L~~l~l~~~~~~ 564 (611)
++.-++.|+.|++...+++
T Consensus 357 aIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 357 AIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred hhhhcCCcceeeccCCcCc
Confidence 4455566666666555554
No 16
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.51 E-value=3.3e-16 Score=149.94 Aligned_cols=366 Identities=15% Similarity=0.094 Sum_probs=174.0
Q ss_pred CCcCcEEeccCcccC-hHHHHHhhhcCCCcEEEecCCCCCChhHHHHHHhcCCCccEEEeccccccChHHHHHHHhcCCC
Q 007252 198 CLDLKSLDVSYLKLT-NDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSG 276 (611)
Q Consensus 198 ~~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~ 276 (611)
+|-.+-.++++|.++ +..+..+..+.+++.|.+.... +. ..++.++. +.+|++|.+..+...+ +..-...+|.
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~-L~-~vPeEL~~-lqkLEHLs~~HN~L~~---vhGELs~Lp~ 79 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTK-LE-QVPEELSR-LQKLEHLSMAHNQLIS---VHGELSDLPR 79 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhh-hh-hChHHHHH-HhhhhhhhhhhhhhHh---hhhhhccchh
Confidence 345566788888666 3445557778888888887622 21 23344555 7778888777643222 2223344566
Q ss_pred CceeccCCCCCccchhHHHHhhcCCCccEEEccCcccChHHHHHHHHhCCCCcEEeeccCCCCCC----CCCCCCCcEEe
Q 007252 277 LLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTN----TDSCRGLVCLK 352 (611)
Q Consensus 277 L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~L~~L~ 352 (611)
|+.+.+..+.. ........+..+..|+.|+++.+.+.... .-.....++-.|+++++..-+- +.++..|-.|+
T Consensus 80 LRsv~~R~N~L-KnsGiP~diF~l~dLt~lDLShNqL~EvP--~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLD 156 (1255)
T KOG0444|consen 80 LRSVIVRDNNL-KNSGIPTDIFRLKDLTILDLSHNQLREVP--TNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLD 156 (1255)
T ss_pred hHHHhhhcccc-ccCCCCchhcccccceeeecchhhhhhcc--hhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhc
Confidence 77666665533 33334556666777777777776554311 1111445556666665431111 33334444445
Q ss_pred cCCCccCChhHHHHHHhccCCCcEEecCCCCCCChhhhhhhccCCCceEEEecCCCCCChHhHHHHHhcCCCCcEEeccC
Q 007252 353 IESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYK 432 (611)
Q Consensus 353 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~ 432 (611)
++++. +. .++.-...+.+|+.|.+++ +.+....+..+..+.+|+.|++++- +-+-..+..-...+.+|..++++.
T Consensus 157 LS~Nr-Le--~LPPQ~RRL~~LqtL~Ls~-NPL~hfQLrQLPsmtsL~vLhms~T-qRTl~N~Ptsld~l~NL~dvDlS~ 231 (1255)
T KOG0444|consen 157 LSNNR-LE--MLPPQIRRLSMLQTLKLSN-NPLNHFQLRQLPSMTSLSVLHMSNT-QRTLDNIPTSLDDLHNLRDVDLSE 231 (1255)
T ss_pred cccch-hh--hcCHHHHHHhhhhhhhcCC-ChhhHHHHhcCccchhhhhhhcccc-cchhhcCCCchhhhhhhhhccccc
Confidence 54422 11 1111122344555555555 4444444444444555555555443 111111111111334555555553
Q ss_pred CCCCC--HHHHHHHHhcCccCceecccccCCCChHHHHHhhCCCCCCEEecCCCccccHHHHHHHHhcCCccCEeecccc
Q 007252 433 CSGIG--DDGLAALSNGCKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHC 510 (611)
Q Consensus 433 ~~~~~--~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c 510 (611)
+ .++ .+.+. .+++|+.|+|++ +.++...+ ......+|++|+++. +.++. +......+++|+.|.+.+|
T Consensus 232 N-~Lp~vPecly----~l~~LrrLNLS~-N~iteL~~-~~~~W~~lEtLNlSr-NQLt~--LP~avcKL~kL~kLy~n~N 301 (1255)
T KOG0444|consen 232 N-NLPIVPECLY----KLRNLRRLNLSG-NKITELNM-TEGEWENLETLNLSR-NQLTV--LPDAVCKLTKLTKLYANNN 301 (1255)
T ss_pred c-CCCcchHHHh----hhhhhheeccCc-Cceeeeec-cHHHHhhhhhhcccc-chhcc--chHHHhhhHHHHHHHhccC
Confidence 2 222 11121 235555555555 34443222 122344555555555 33332 1222223555555555555
Q ss_pred CCCCHHHHHHHHhhCCCCCEEEeccCCCChhHHHHHhccccccccceeecccCCCHHHHHHHHhhcCCCccchhhhhhhh
Q 007252 511 AKIDDSGFWALAYYSQNLRQINLSYCALSDMALCMVMGNMTRLQDAKLVHLTNCTREGFELALRSCCMRIKKVKLLAPIR 590 (611)
Q Consensus 511 ~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~c~~l~~l~l~~~~~ 590 (611)
+++-+++......+..|+.++..+|.+.-.+ +.+..|+.|+.|.+.+..-+|.+..-.+ .+.|+.|+|..+..
T Consensus 302 -kL~FeGiPSGIGKL~~Levf~aanN~LElVP--EglcRC~kL~kL~L~~NrLiTLPeaIHl----L~~l~vLDlreNpn 374 (1255)
T KOG0444|consen 302 -KLTFEGIPSGIGKLIQLEVFHAANNKLELVP--EGLCRCVKLQKLKLDHNRLITLPEAIHL----LPDLKVLDLRENPN 374 (1255)
T ss_pred -cccccCCccchhhhhhhHHHHhhccccccCc--hhhhhhHHHHHhcccccceeechhhhhh----cCCcceeeccCCcC
Confidence 5555555444444455555555555532111 2334555566655544433444333332 33455555544333
Q ss_pred hcCC
Q 007252 591 FLLS 594 (611)
Q Consensus 591 ~~~p 594 (611)
-+.|
T Consensus 375 LVMP 378 (1255)
T KOG0444|consen 375 LVMP 378 (1255)
T ss_pred ccCC
Confidence 3333
No 17
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.49 E-value=2.1e-13 Score=140.66 Aligned_cols=253 Identities=31% Similarity=0.511 Sum_probs=154.0
Q ss_pred CCCccEEEccCc-ccChHHHHHHHHhCCCCcEEeeccC-CCCCCCCCCCCCcEEecCCCccCChhHHHHHHhccCCCcEE
Q 007252 300 LKNLEAITMDGA-RISDSCFQTISFNCKSLVEIGLSKC-LGVTNTDSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEI 377 (611)
Q Consensus 300 ~~~L~~L~l~~~-~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 377 (611)
.+.|+.+.+.++ .+.+.++..+...+++|++|+++++ .... ........+...+++|+.|
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~------------------~~~~~~~~~~~~~~~L~~l 248 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLIT------------------LSPLLLLLLLSICRKLKSL 248 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccc------------------cchhHhhhhhhhcCCcCcc
Confidence 455555555554 3444445555556666666666552 1111 1111222344456677777
Q ss_pred ecCCCCCCChhhhhhhcc-CCCceEEEecCCCCCChHhHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhcCccCceecc
Q 007252 378 DLTDCNGVNDKGLEYLSR-CSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKKLKKLNL 456 (611)
Q Consensus 378 ~l~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 456 (611)
+++.|..+++.++..++. |++|+.|.+.+|..+++.++..++..+++|++|++++|..+++.++..+..+|++|+.|.+
T Consensus 249 ~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~ 328 (482)
T KOG1947|consen 249 DLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKL 328 (482)
T ss_pred chhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhh
Confidence 777765577777666664 6777777777776677777777777777777777777777777777777777777666655
Q ss_pred ccc---CCCChHHHHHhhCCC--CCCEEecCCCccccHHHHHHHHhcCCccCEeeccccCCCCHHHHHHHHhhCCCCCEE
Q 007252 457 SYC---VNVTDRGMEHIRFIE--DLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQNLRQI 531 (611)
Q Consensus 457 ~~c---~~l~~~~~~~l~~~~--~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L 531 (611)
..+ ..++..++..+.... .+..+.+.+|+++++..+.... .......+.+.+|+.++ ..+.........++.|
T Consensus 329 ~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~l~gc~~l~-~~l~~~~~~~~~l~~L 406 (482)
T KOG1947|consen 329 LSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG-ISDLGLELSLRGCPNLT-ESLELRLCRSDSLRVL 406 (482)
T ss_pred hhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh-ccCcchHHHhcCCcccc-hHHHHHhccCCccceE
Confidence 443 335555554444332 5666666666666665554443 12222256677777776 5555555554558888
Q ss_pred EeccCC-CChhHHHHHhcc-ccccccceeecccCCCHHHHHHHH
Q 007252 532 NLSYCA-LSDMALCMVMGN-MTRLQDAKLVHLTNCTREGFELAL 573 (611)
Q Consensus 532 ~l~~~~-l~~~~~~~~l~~-~~~L~~l~l~~~~~~~~~~~~~~~ 573 (611)
.++.|. .++..+ ..... +..+..+.+.+|+.++..+.....
T Consensus 407 ~l~~~~~~t~~~l-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 449 (482)
T KOG1947|consen 407 NLSDCRLVTDKGL-RCLADSCSNLKDLDLSGCRVITLKSLEGFA 449 (482)
T ss_pred ecccCccccccch-HHHhhhhhccccCCccCcccccchhhhhhh
Confidence 888887 666655 44444 677888888888887776665433
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.43 E-value=2.8e-15 Score=150.25 Aligned_cols=125 Identities=21% Similarity=0.200 Sum_probs=69.4
Q ss_pred CCCCCEEecCCCccccHHHHHHHHhcCCccCEeeccccCCCCHHHHHHHHhhCCCCCEEEeccCCCChhHHHHHhccccc
Q 007252 473 IEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQNLRQINLSYCALSDMALCMVMGNMTR 552 (611)
Q Consensus 473 ~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~l~~~~~ 552 (611)
++.|+.|.+.+ +.+++..+..+. ++..|+.|++++| .+....-..+.. ++.|++|+++||.++..+. .+..++.
T Consensus 358 ~~~Lq~Lylan-N~Ltd~c~p~l~-~~~hLKVLhLsyN-rL~~fpas~~~k-le~LeeL~LSGNkL~~Lp~--tva~~~~ 431 (1081)
T KOG0618|consen 358 HAALQELYLAN-NHLTDSCFPVLV-NFKHLKVLHLSYN-RLNSFPASKLRK-LEELEELNLSGNKLTTLPD--TVANLGR 431 (1081)
T ss_pred hHHHHHHHHhc-Ccccccchhhhc-cccceeeeeeccc-ccccCCHHHHhc-hHHhHHHhcccchhhhhhH--HHHhhhh
Confidence 44566677766 566666655443 5777777777777 544333223322 3677777777777665553 4556666
Q ss_pred cccceeecccCCCHHHHHHHHhhcCCCccchhhh-h-----hhhhcCChHHHhhcccccceeec
Q 007252 553 LQDAKLVHLTNCTREGFELALRSCCMRIKKVKLL-A-----PIRFLLSSEILETLHAAGCKIRW 610 (611)
Q Consensus 553 L~~l~l~~~~~~~~~~~~~~~~~~c~~l~~l~l~-~-----~~~~~~p~~~~~~l~~~~c~~~~ 610 (611)
|+.|..- +.....+.++ ...++|+.++|+ . .+....|..-++.+...| ++|
T Consensus 432 L~tL~ah---sN~l~~fPe~--~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSG--N~~ 488 (1081)
T KOG0618|consen 432 LHTLRAH---SNQLLSFPEL--AQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSG--NTR 488 (1081)
T ss_pred hHHHhhc---CCceeechhh--hhcCcceEEecccchhhhhhhhhhCCCcccceeeccC--Ccc
Confidence 6666532 1112222221 126778888876 2 222344434566666655 444
No 19
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.35 E-value=8.4e-12 Score=111.96 Aligned_cols=246 Identities=21% Similarity=0.306 Sum_probs=117.8
Q ss_pred hHHHHhhcCCCccEEEccCcccChHHHHHHHHhC---CCCcEEeeccCCCCCCCCCCCCCcEEecCCCccCChh---H--
Q 007252 292 TLLHHMRDLKNLEAITMDGARISDSCFQTISFNC---KSLVEIGLSKCLGVTNTDSCRGLVCLKIESCNMITEK---G-- 363 (611)
Q Consensus 292 ~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~---~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~-- 363 (611)
.....+..+..++.++++|+.+..+....+...+ ++|+..++++...- ...+. .
T Consensus 21 ~v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftG------------------R~~~Ei~e~L~ 82 (382)
T KOG1909|consen 21 DVEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTG------------------RLKDEIPEALK 82 (382)
T ss_pred hHHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcC------------------CcHHHHHHHHH
Confidence 3455566667777888887777766666555443 33333333332100 00000 0
Q ss_pred -HHHHHhccCCCcEEecCCCCCCChhhhhh----hccCCCceEEEecCCCCCChHhHHHH------------HhcCCCCc
Q 007252 364 -LYQLGSFCLRLEEIDLTDCNGVNDKGLEY----LSRCSELLFLKLGLCENISDKGLFYI------------ASNCLRIQ 426 (611)
Q Consensus 364 -~~~~~~~~~~L~~L~l~~~~~~~~~~~~~----l~~~~~L~~L~l~~~~~~~~~~~~~l------------~~~~~~L~ 426 (611)
+..-...+|.|++|+++. +.+...++.. ++++..|++|.+.+| .+...+-..+ +..-+.|+
T Consensus 83 ~l~~aL~~~~~L~~ldLSD-NA~G~~g~~~l~~ll~s~~~L~eL~L~N~-Glg~~ag~~l~~al~~l~~~kk~~~~~~Lr 160 (382)
T KOG1909|consen 83 MLSKALLGCPKLQKLDLSD-NAFGPKGIRGLEELLSSCTDLEELYLNNC-GLGPEAGGRLGRALFELAVNKKAASKPKLR 160 (382)
T ss_pred HHHHHHhcCCceeEeeccc-cccCccchHHHHHHHHhccCHHHHhhhcC-CCChhHHHHHHHHHHHHHHHhccCCCcceE
Confidence 111111345555555555 4444444322 234555555555555 3333222211 11335566
Q ss_pred EEeccCCCCCCHHHHH---HHHhcCccCceecccccCCCChHHH----HHhhCCCCCCEEecCCCccccHHHHHHHH---
Q 007252 427 GLDLYKCSGIGDDGLA---ALSNGCKKLKKLNLSYCVNVTDRGM----EHIRFIEDLSDLELRGLTKITSAGLTALA--- 496 (611)
Q Consensus 427 ~L~l~~~~~~~~~~~~---~~~~~~~~L~~L~l~~c~~l~~~~~----~~l~~~~~L~~L~l~~c~~l~~~~~~~~~--- 496 (611)
.+...++ .+.+.+.. ..++.+|.|+.+.+++ +.|...++ ..+..+|+|+.|++.. +.++..+-..++
T Consensus 161 v~i~~rN-rlen~ga~~~A~~~~~~~~leevr~~q-N~I~~eG~~al~eal~~~~~LevLdl~D-Ntft~egs~~LakaL 237 (382)
T KOG1909|consen 161 VFICGRN-RLENGGATALAEAFQSHPTLEEVRLSQ-NGIRPEGVTALAEALEHCPHLEVLDLRD-NTFTLEGSVALAKAL 237 (382)
T ss_pred EEEeecc-ccccccHHHHHHHHHhccccceEEEec-ccccCchhHHHHHHHHhCCcceeeeccc-chhhhHHHHHHHHHh
Confidence 6665553 34333322 2334445666666665 44544444 2234566666666665 444444333333
Q ss_pred hcCCccCEeeccccCCCCHHHHHHHH----hhCCCCCEEEeccCCCChhHHH---HHhccccccccceeecc
Q 007252 497 AGCKRLADLDLKHCAKIDDSGFWALA----YYSQNLRQINLSYCALSDMALC---MVMGNMTRLQDAKLVHL 561 (611)
Q Consensus 497 ~~~~~L~~L~l~~c~~l~~~~~~~~~----~~~~~L~~L~l~~~~l~~~~~~---~~l~~~~~L~~l~l~~~ 561 (611)
..++.|++|.+++| .+...|..++. ...|+|+.|.+.+|.++..+.. .++...|.|+.|.+.+|
T Consensus 238 ~s~~~L~El~l~dc-ll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN 308 (382)
T KOG1909|consen 238 SSWPHLRELNLGDC-LLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGN 308 (382)
T ss_pred cccchheeeccccc-ccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcc
Confidence 23455666666666 65554433332 2345666666666665544441 12223455556655555
No 20
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.26 E-value=9.2e-11 Score=105.42 Aligned_cols=276 Identities=20% Similarity=0.181 Sum_probs=130.9
Q ss_pred HHHHHcCCcCcEEeccCcccChHHHHHhh----hcCCCcEEEecCCCCCChhHHHHHHhcCCCccEEEeccccccChHHH
Q 007252 192 DLLCKKCLDLKSLDVSYLKLTNDSFCSIA----TLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGL 267 (611)
Q Consensus 192 ~~l~~~~~~L~~L~l~~~~~~~~~~~~l~----~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l 267 (611)
........+++.+++++|.+.......++ +.++|+..++++. ++......+...+ ..+
T Consensus 23 ~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~--ftGR~~~Ei~e~L----------------~~l 84 (382)
T KOG1909|consen 23 EEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM--FTGRLKDEIPEAL----------------KML 84 (382)
T ss_pred HHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh--hcCCcHHHHHHHH----------------HHH
Confidence 33445567788888888877666555543 2445555555431 1111111111100 012
Q ss_pred HHHHhcCCCCceeccCCCCCc--cchhHHHHhhcCCCccEEEccCcccChHHHHHHHHhCCCCcEEeeccCCCCCCCCCC
Q 007252 268 ISVIRGHSGLLQLDAGHCFSE--LSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTDSC 345 (611)
Q Consensus 268 ~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~ 345 (611)
......+|+|++++++++..- ....+...+.++..|++|++.+|.+...+-..+...+..|-.... ...-
T Consensus 85 ~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk--------~~~~ 156 (382)
T KOG1909|consen 85 SKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKK--------AASK 156 (382)
T ss_pred HHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhc--------cCCC
Confidence 233344567777777665320 111234445556677777777777666555544322111100000 1222
Q ss_pred CCCcEEecCCCccCChhHHHHHHhccCCCcEEecCCCCCCChhhhhh----hccCCCceEEEecCCCCCChHhHHHH---
Q 007252 346 RGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEY----LSRCSELLFLKLGLCENISDKGLFYI--- 418 (611)
Q Consensus 346 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~----l~~~~~L~~L~l~~~~~~~~~~~~~l--- 418 (611)
+.|+.+.... +.+.+.+... +...+.|+.+.+..+ .+...++..+
T Consensus 157 --------------------------~~Lrv~i~~r-Nrlen~ga~~~A~~~~~~~~leevr~~qN-~I~~eG~~al~ea 208 (382)
T KOG1909|consen 157 --------------------------PKLRVFICGR-NRLENGGATALAEAFQSHPTLEEVRLSQN-GIRPEGVTALAEA 208 (382)
T ss_pred --------------------------cceEEEEeec-cccccccHHHHHHHHHhccccceEEEecc-cccCchhHHHHHH
Confidence 3444444444 3333333222 223445555555443 3333333221
Q ss_pred HhcCCCCcEEeccCCCCCCHHHHHHHHh---cCccCceecccccCCCChHHHHHhh-----CCCCCCEEecCCCccccHH
Q 007252 419 ASNCLRIQGLDLYKCSGIGDDGLAALSN---GCKKLKKLNLSYCVNVTDRGMEHIR-----FIEDLSDLELRGLTKITSA 490 (611)
Q Consensus 419 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~~~L~~L~l~~c~~l~~~~~~~l~-----~~~~L~~L~l~~c~~l~~~ 490 (611)
..+|++|+.|++..+ .++..+-..+++ .+++|++|++++| .+.+.+..++. ..|+|+.|.+.+ +.++..
T Consensus 209 l~~~~~LevLdl~DN-tft~egs~~LakaL~s~~~L~El~l~dc-ll~~~Ga~a~~~al~~~~p~L~vl~l~g-NeIt~d 285 (382)
T KOG1909|consen 209 LEHCPHLEVLDLRDN-TFTLEGSVALAKALSSWPHLRELNLGDC-LLENEGAIAFVDALKESAPSLEVLELAG-NEITRD 285 (382)
T ss_pred HHhCCcceeeecccc-hhhhHHHHHHHHHhcccchheeeccccc-ccccccHHHHHHHHhccCCCCceeccCc-chhHHH
Confidence 225666666666653 455444443332 2455666666666 34444443332 356677777766 345443
Q ss_pred HHHHHH---hcCCccCEeeccccCCC--CHHHHHHHHhhC
Q 007252 491 GLTALA---AGCKRLADLDLKHCAKI--DDSGFWALAYYS 525 (611)
Q Consensus 491 ~~~~~~---~~~~~L~~L~l~~c~~l--~~~~~~~~~~~~ 525 (611)
+...+. ..-|.|+.|++++| .+ .+.++..+...+
T Consensus 286 a~~~la~~~~ek~dL~kLnLngN-~l~e~de~i~ei~~~~ 324 (382)
T KOG1909|consen 286 AALALAACMAEKPDLEKLNLNGN-RLGEKDEGIDEIASKF 324 (382)
T ss_pred HHHHHHHHHhcchhhHHhcCCcc-cccccchhHHHHHHhc
Confidence 332222 23567777777777 55 455555555554
No 21
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=4.5e-12 Score=116.94 Aligned_cols=218 Identities=19% Similarity=0.174 Sum_probs=143.4
Q ss_pred hcCCCccEEEccCcccChHHHHHHHHhCCCCcEEeeccCCCCCCCCCCCCCcEEecCCCccCChhHHHHHHhccCCCcEE
Q 007252 298 RDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTDSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEI 377 (611)
Q Consensus 298 ~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 377 (611)
+++.+|+.+.+.++.+...+.......||+++.|+++.+ -......+..+++.+|+|+.|
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~N--------------------L~~nw~~v~~i~eqLp~Le~L 177 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRN--------------------LFHNWFPVLKIAEQLPSLENL 177 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhh--------------------hHHhHHHHHHHHHhcccchhc
Confidence 345567777777776665555455556666666666543 223345667777788899999
Q ss_pred ecCCCCCCChhhhh-hhccCCCceEEEecCCCCCChHhHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhcCccCceecc
Q 007252 378 DLTDCNGVNDKGLE-YLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKKLKKLNL 456 (611)
Q Consensus 378 ~l~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 456 (611)
+++. +.+....-. .-..++.|+.|.++.| .++...+..+...||+|+.|++.++..+...... .+.+..|++|+|
T Consensus 178 Nls~-Nrl~~~~~s~~~~~l~~lK~L~l~~C-Gls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~--~~i~~~L~~LdL 253 (505)
T KOG3207|consen 178 NLSS-NRLSNFISSNTTLLLSHLKQLVLNSC-GLSWKDVQWILLTFPSLEVLYLEANEIILIKATS--TKILQTLQELDL 253 (505)
T ss_pred cccc-ccccCCccccchhhhhhhheEEeccC-CCCHHHHHHHHHhCCcHHHhhhhcccccceecch--hhhhhHHhhccc
Confidence 8887 444322111 1114678999999998 8888888888888999999999886433221111 122467899999
Q ss_pred cccCCCChHHHHHhhCCCCCCEEecCCCccccHHHHHH-----HHhcCCccCEeeccccCCCCH-HHHHHHHhhCCCCCE
Q 007252 457 SYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTA-----LAAGCKRLADLDLKHCAKIDD-SGFWALAYYSQNLRQ 530 (611)
Q Consensus 457 ~~c~~l~~~~~~~l~~~~~L~~L~l~~c~~l~~~~~~~-----~~~~~~~L~~L~l~~c~~l~~-~~~~~~~~~~~~L~~ 530 (611)
++.+.++-+....++.+|.|+.|+++.| .+++..... ....+++|+.|++..| ++.+ ..+.++. .+++|+.
T Consensus 254 s~N~li~~~~~~~~~~l~~L~~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N-~I~~w~sl~~l~-~l~nlk~ 330 (505)
T KOG3207|consen 254 SNNNLIDFDQGYKVGTLPGLNQLNLSST-GIASIAEPDVESLDKTHTFPKLEYLNISEN-NIRDWRSLNHLR-TLENLKH 330 (505)
T ss_pred cCCcccccccccccccccchhhhhcccc-CcchhcCCCccchhhhcccccceeeecccC-ccccccccchhh-ccchhhh
Confidence 9866666666666778999999999885 454432222 2345889999999999 6533 2233333 3488888
Q ss_pred EEeccCCCChhH
Q 007252 531 INLSYCALSDMA 542 (611)
Q Consensus 531 L~l~~~~l~~~~ 542 (611)
|.+..|.++.+.
T Consensus 331 l~~~~n~ln~e~ 342 (505)
T KOG3207|consen 331 LRITLNYLNKET 342 (505)
T ss_pred hhcccccccccc
Confidence 888888765443
No 22
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=3.6e-11 Score=111.15 Aligned_cols=158 Identities=18% Similarity=0.159 Sum_probs=96.8
Q ss_pred hcCCCcEEEecCCCCCChhHHHHHHhcCCCccEEEeccccccChHHHHHHHhcCCCCceeccCCCCCccchhHHHHhhcC
Q 007252 221 TLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDL 300 (611)
Q Consensus 221 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~ 300 (611)
++.+|+.+.++++. +.+.+.....+.|++++.|+++..-......+..+...+|+|+.|+++.+.. .....-..-..+
T Consensus 119 n~kkL~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl-~~~~~s~~~~~l 196 (505)
T KOG3207|consen 119 NLKKLREISLDNYR-VEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRL-SNFISSNTTLLL 196 (505)
T ss_pred hHHhhhheeecCcc-ccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccc-cCCccccchhhh
Confidence 45666777776643 4444433444557777777777754445556667777788888888776543 111111111257
Q ss_pred CCccEEEccCcccChHHHHHHHHhCCCCcEEeeccCCCCCC----CCCCCCCcEEecCCCccCChhHHHHHHhccCCCcE
Q 007252 301 KNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTN----TDSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEE 376 (611)
Q Consensus 301 ~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 376 (611)
+.|+.|.+++|.++...+..+...+|+|+.|.+..+..+.. ...+..|+.|++++++.++........ .+|.|+.
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~-~l~~L~~ 275 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVG-TLPGLNQ 275 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccc-cccchhh
Confidence 78999999999999999998888899999999887743221 334445555555554444333333322 4455555
Q ss_pred EecCC
Q 007252 377 IDLTD 381 (611)
Q Consensus 377 L~l~~ 381 (611)
|.++.
T Consensus 276 Lnls~ 280 (505)
T KOG3207|consen 276 LNLSS 280 (505)
T ss_pred hhccc
Confidence 55554
No 23
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.98 E-value=3.4e-11 Score=109.96 Aligned_cols=147 Identities=20% Similarity=0.148 Sum_probs=76.9
Q ss_pred CCcCcEEeccCcccChHHHHHhhhcCCCcEEEecCCCCCChhHHHHHHhcCCCccEEEeccccccChHHHHHHHhcCCCC
Q 007252 198 CLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGL 277 (611)
Q Consensus 198 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L 277 (611)
+.+|..+++.++.+.......+. ++.|++|+...+ .-..-++.++. +.+|..|++..... ..++ -+.+|..|
T Consensus 159 ~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N--~L~tlP~~lg~-l~~L~~LyL~~Nki---~~lP-ef~gcs~L 230 (565)
T KOG0472|consen 159 LSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSN--LLETLPPELGG-LESLELLYLRRNKI---RFLP-EFPGCSLL 230 (565)
T ss_pred HHHHHHhhccccchhhCCHHHHH-HHHHHhcccchh--hhhcCChhhcc-hhhhHHHHhhhccc---ccCC-CCCccHHH
Confidence 34555566666544433333333 666666665432 11111222333 45555555544221 1122 23456667
Q ss_pred ceeccCCCCCccchhHHHHhhcCCCccEEEccCcccChHHHHHHHHhCCCCcEEeeccCCCCC--C-CCCCCCCcEEecC
Q 007252 278 LQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVT--N-TDSCRGLVCLKIE 354 (611)
Q Consensus 278 ~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~--~-~~~~~~L~~L~l~ 354 (611)
+++++..+. +.-...+....++++..|++..+.+........ .+.+|+.|+++++.-.. . .+.. +|+.|.+.
T Consensus 231 ~Elh~g~N~--i~~lpae~~~~L~~l~vLDLRdNklke~Pde~c--lLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~le 305 (565)
T KOG0472|consen 231 KELHVGENQ--IEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEIC--LLRSLERLDLSNNDISSLPYSLGNL-HLKFLALE 305 (565)
T ss_pred HHHHhcccH--HHhhHHHHhcccccceeeeccccccccCchHHH--HhhhhhhhcccCCccccCCcccccc-eeeehhhc
Confidence 777765542 233334455577888888888887654433332 45677888887764211 1 4445 77777777
Q ss_pred CCc
Q 007252 355 SCN 357 (611)
Q Consensus 355 ~~~ 357 (611)
|++
T Consensus 306 GNP 308 (565)
T KOG0472|consen 306 GNP 308 (565)
T ss_pred CCc
Confidence 765
No 24
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.93 E-value=2.2e-11 Score=111.11 Aligned_cols=110 Identities=21% Similarity=0.204 Sum_probs=57.3
Q ss_pred hcCCCCcEEeccCCCCCCHHHHHHHHhcCccCceecccccCCCChHHHHHhhCCCCCCEEecCCCccccHHHHHHHHhcC
Q 007252 420 SNCLRIQGLDLYKCSGIGDDGLAALSNGCKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGC 499 (611)
Q Consensus 420 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~c~~l~~~~~~~~~~~~ 499 (611)
..+++|..|++++. -+.+...+. ..+..|+.|+++.. .+.. -.+.+.....++.+-.++ +.+....... ..++
T Consensus 432 ~~l~kLt~L~L~NN-~Ln~LP~e~--~~lv~Lq~LnlS~N-rFr~-lP~~~y~lq~lEtllas~-nqi~~vd~~~-l~nm 504 (565)
T KOG0472|consen 432 SQLQKLTFLDLSNN-LLNDLPEEM--GSLVRLQTLNLSFN-RFRM-LPECLYELQTLETLLASN-NQIGSVDPSG-LKNM 504 (565)
T ss_pred Hhhhcceeeecccc-hhhhcchhh--hhhhhhheeccccc-cccc-chHHHhhHHHHHHHHhcc-ccccccChHH-hhhh
Confidence 35677888888763 333222221 12355788888773 2221 011111122333333332 3443322222 2346
Q ss_pred CccCEeeccccCCCCHHHHHHHHhhCCCCCEEEeccCCCC
Q 007252 500 KRLADLDLKHCAKIDDSGFWALAYYSQNLRQINLSYCALS 539 (611)
Q Consensus 500 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~~~l~ 539 (611)
.+|.+|++.+| .+.. +..+...+.+|++|.+.+|++.
T Consensus 505 ~nL~tLDL~nN-dlq~--IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 505 RNLTTLDLQNN-DLQQ--IPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hhcceeccCCC-chhh--CChhhccccceeEEEecCCccC
Confidence 77888888777 4432 3455566788888888888866
No 25
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.85 E-value=1.7e-10 Score=105.26 Aligned_cols=262 Identities=17% Similarity=0.103 Sum_probs=132.0
Q ss_pred chhHHHHhhcCCCccEEEccCcccChHHHHHHHHhCCCCcEEeeccCCCCCC-----CCCCCCCcEEecCCCccCChhHH
Q 007252 290 STTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTN-----TDSCRGLVCLKIESCNMITEKGL 364 (611)
Q Consensus 290 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~-----~~~~~~L~~L~l~~~~~~~~~~~ 364 (611)
.......|..+++|+.|+++.|.++...-.++. .++.+.+|.+.+...+++ +..+..++.|.+.-+. +. -..
T Consensus 80 ~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~-GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~-i~-Cir 156 (498)
T KOG4237|consen 80 SSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFK-GLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANH-IN-CIR 156 (498)
T ss_pred ccCChhhccchhhhceecccccchhhcChHhhh-hhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhh-hc-chh
Confidence 333444555555666666665554433222222 344455555555444444 4444455555544321 11 122
Q ss_pred HHHHhccCCCcEEecCCCCCCChhhhhhhccCCCceEEEecCCCCCChHhHHHHHhc----------CCCCcEEeccCCC
Q 007252 365 YQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASN----------CLRIQGLDLYKCS 434 (611)
Q Consensus 365 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~----------~~~L~~L~l~~~~ 434 (611)
+.....+++|..|.+.. +.+....-..+..+..++++.+..++.+.+-.+...+.. +.-.....+.+ .
T Consensus 157 ~~al~dL~~l~lLslyD-n~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~-~ 234 (498)
T KOG4237|consen 157 QDALRDLPSLSLLSLYD-NKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYY-K 234 (498)
T ss_pred HHHHHHhhhcchhcccc-hhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHH-H
Confidence 33344667888888877 555444444556677777777776654443322222110 00000011111 0
Q ss_pred CCCHHHHHHHHhcCccCceecccccCCCChHHHHHhhCCCCCCEEecCCCccccHHHHHHHHhcCCccCEeeccccCCCC
Q 007252 435 GIGDDGLAALSNGCKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKID 514 (611)
Q Consensus 435 ~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~ 514 (611)
.+.......+......+.+=-.+.|.-...-....+.++|+|+.|++++ ++++...-.. +++...+++|.+..| ++.
T Consensus 235 Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsn-N~i~~i~~~a-Fe~~a~l~eL~L~~N-~l~ 311 (498)
T KOG4237|consen 235 RINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSN-NKITRIEDGA-FEGAAELQELYLTRN-KLE 311 (498)
T ss_pred HhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCC-Cccchhhhhh-hcchhhhhhhhcCcc-hHH
Confidence 1111111111111111111112233333333445577788888888887 6676544333 345778888888887 654
Q ss_pred HHHHHHHHhhCCCCCEEEeccCCCChhHHHHHhccccccccceeecc
Q 007252 515 DSGFWALAYYSQNLRQINLSYCALSDMALCMVMGNMTRLQDAKLVHL 561 (611)
Q Consensus 515 ~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~l~~~~~L~~l~l~~~ 561 (611)
... ..+...+..|+.|++.+|.|+.... .+|....+|.+|.+...
T Consensus 312 ~v~-~~~f~~ls~L~tL~L~~N~it~~~~-~aF~~~~~l~~l~l~~N 356 (498)
T KOG4237|consen 312 FVS-SGMFQGLSGLKTLSLYDNQITTVAP-GAFQTLFSLSTLNLLSN 356 (498)
T ss_pred HHH-HHhhhccccceeeeecCCeeEEEec-ccccccceeeeeehccC
Confidence 332 2233445778888888888877777 67777777877777553
No 26
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.82 E-value=1.4e-09 Score=70.08 Aligned_cols=38 Identities=18% Similarity=0.438 Sum_probs=33.3
Q ss_pred ccCCcHHHHHHHHhhhCCCCCchhhHhhchhHHhhhccc
Q 007252 7 LDVLTEDLLVRVREKIGDELDSKTWRLVCKEFSRVDSVT 45 (611)
Q Consensus 7 ~~~LP~e~l~~If~~L~~~~~~~~~~~vc~~w~~~~~~~ 45 (611)
|..||+|++.+||+||+ ..|+.++++|||+|++++...
T Consensus 1 i~~LP~Eil~~If~~L~-~~dl~~~~~vcr~w~~~~~~~ 38 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLD-PRDLLRLSLVCRRWRRIANDN 38 (47)
T ss_dssp CCCS-HHHHHHHHTTS--HHHHHHHTTSSHHHHHHHTCC
T ss_pred ChHhHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHCCh
Confidence 57899999999999999 999999999999999988654
No 27
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.76 E-value=3.2e-08 Score=102.64 Aligned_cols=163 Identities=20% Similarity=0.197 Sum_probs=114.9
Q ss_pred CCCcEEeccCCCCCChHHHHHHHhcCCccceeecccccccChHHHHHHHHcCCcCcEEeccCcccChHHHHHhhhcCCCc
Q 007252 147 SGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATLAKLE 226 (611)
Q Consensus 147 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 226 (611)
.+|++|+++|...+...-...++.-+|+|++|.+.+. .+....+..+..++|+|..||+++++++. +..++++++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~-~~~~~dF~~lc~sFpNL~sLDIS~TnI~n--l~GIS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGR-QFDNDDFSQLCASFPNLRSLDISGTNISN--LSGISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCc-eecchhHHHHhhccCccceeecCCCCccC--cHHHhccccHH
Confidence 6888888888655555455667777899999999886 55555577788888999999999987776 37788888998
Q ss_pred EEEecCCCCCChhHHHHHHhcCCCccEEEeccccccChHHHHHHHhcCCCCceeccCCCCCccchhHHHHhhcCCCccEE
Q 007252 227 SLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAI 306 (611)
Q Consensus 227 ~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L 306 (611)
.|.+.+-..-+...+..+.. +.+|+.||++......... +.....+.-..+|.|+.|
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~-L~~L~vLDIS~~~~~~~~~----------------------ii~qYlec~~~LpeLrfL 255 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFN-LKKLRVLDISRDKNNDDTK----------------------IIEQYLECGMVLPELRFL 255 (699)
T ss_pred HHhccCCCCCchhhHHHHhc-ccCCCeeeccccccccchH----------------------HHHHHHHhcccCccccEE
Confidence 88888754334456666766 8888888888743322221 112233444457788888
Q ss_pred EccCcccChHHHHHHHHhCCCCcEEeecc
Q 007252 307 TMDGARISDSCFQTISFNCKSLVEIGLSK 335 (611)
Q Consensus 307 ~l~~~~~~~~~l~~~~~~~~~L~~L~l~~ 335 (611)
+.+++.++.+.+..+...-|+|+.+.+-+
T Consensus 256 DcSgTdi~~~~le~ll~sH~~L~~i~~~~ 284 (699)
T KOG3665|consen 256 DCSGTDINEEILEELLNSHPNLQQIAALD 284 (699)
T ss_pred ecCCcchhHHHHHHHHHhCccHhhhhhhh
Confidence 88888888888877776677777666443
No 28
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.74 E-value=1.1e-09 Score=100.05 Aligned_cols=89 Identities=19% Similarity=0.106 Sum_probs=51.5
Q ss_pred hhhccCCCceEEEecCCCCCChHhHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhcCccCceecccccCCCChHHHHHh
Q 007252 391 EYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKKLKKLNLSYCVNVTDRGMEHI 470 (611)
Q Consensus 391 ~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l 470 (611)
..+.++++|+.++++++ .++...-..+. ...++++|.+.++ ++... -..+++++..|+.|+|++ ++|+.....++
T Consensus 268 ~cf~~L~~L~~lnlsnN-~i~~i~~~aFe-~~a~l~eL~L~~N-~l~~v-~~~~f~~ls~L~tL~L~~-N~it~~~~~aF 342 (498)
T KOG4237|consen 268 KCFKKLPNLRKLNLSNN-KITRIEDGAFE-GAAELQELYLTRN-KLEFV-SSGMFQGLSGLKTLSLYD-NQITTVAPGAF 342 (498)
T ss_pred HHHhhcccceEeccCCC-ccchhhhhhhc-chhhhhhhhcCcc-hHHHH-HHHhhhccccceeeeecC-CeeEEEecccc
Confidence 44556777777777765 55544333333 4566666766653 33321 123445567777777766 56666666666
Q ss_pred hCCCCCCEEecCCC
Q 007252 471 RFIEDLSDLELRGL 484 (611)
Q Consensus 471 ~~~~~L~~L~l~~c 484 (611)
....+|.+|++-+.
T Consensus 343 ~~~~~l~~l~l~~N 356 (498)
T KOG4237|consen 343 QTLFSLSTLNLLSN 356 (498)
T ss_pred cccceeeeeehccC
Confidence 66666666666553
No 29
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.68 E-value=6e-08 Score=100.68 Aligned_cols=158 Identities=13% Similarity=0.106 Sum_probs=101.2
Q ss_pred CCCcEEecCCCCCCChhhhhhhc-cCCCceEEEecCCCCCChHhHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhcCcc
Q 007252 372 LRLEEIDLTDCNGVNDKGLEYLS-RCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKK 450 (611)
Q Consensus 372 ~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 450 (611)
.+|++|++++...+...+...++ .+|.|++|.+.+- .+..+.+..+..++|+|.+||++++ .+++. ..+ ..+++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~-~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl--~GI-S~Lkn 196 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGR-QFDNDDFSQLCASFPNLRSLDISGT-NISNL--SGI-SRLKN 196 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCc-eecchhHHHHhhccCccceeecCCC-CccCc--HHH-hcccc
Confidence 58888888885455555555555 4788888888875 5555556677778888888888886 44433 222 34677
Q ss_pred CceecccccCCCChHHHHHhhCCCCCCEEecCCCccccHH-HHHH---HHhcCCccCEeeccccCCCCHHHHHHHHhhCC
Q 007252 451 LKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSA-GLTA---LAAGCKRLADLDLKHCAKIDDSGFWALAYYSQ 526 (611)
Q Consensus 451 L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~c~~l~~~-~~~~---~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~ 526 (611)
|+.|.+.+-+--+...+..+.++.+|+.|+++.-...... .+.. ....+|.|+.||.++. .+....++.+...-|
T Consensus 197 Lq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT-di~~~~le~ll~sH~ 275 (699)
T KOG3665|consen 197 LQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT-DINEEILEELLNSHP 275 (699)
T ss_pred HHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCc-chhHHHHHHHHHhCc
Confidence 8887776644333455666777888888888874333322 1111 1224677888888777 777776777666667
Q ss_pred CCCEEEecc
Q 007252 527 NLRQINLSY 535 (611)
Q Consensus 527 ~L~~L~l~~ 535 (611)
+|+.+-.-+
T Consensus 276 ~L~~i~~~~ 284 (699)
T KOG3665|consen 276 NLQQIAALD 284 (699)
T ss_pred cHhhhhhhh
Confidence 777665443
No 30
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.62 E-value=6.2e-08 Score=101.04 Aligned_cols=258 Identities=15% Similarity=0.091 Sum_probs=155.4
Q ss_pred CCccEEEeccccccChHHHHHHHhcCCCCceeccCCCCCccchhHHHHhhcCCCccEEEccCcccChHHHHHHHHhCCCC
Q 007252 249 PLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSL 328 (611)
Q Consensus 249 ~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L 328 (611)
..-..|+++.+.. + .++..+ .++|+.|.+.++.. ... . ...++|++|++++|.++... ...++|
T Consensus 201 ~~~~~LdLs~~~L-t--sLP~~l--~~~L~~L~L~~N~L--t~L-P---~lp~~Lk~LdLs~N~LtsLP-----~lp~sL 264 (788)
T PRK15387 201 NGNAVLNVGESGL-T--TLPDCL--PAHITTLVIPDNNL--TSL-P---ALPPELRTLEVSGNQLTSLP-----VLPPGL 264 (788)
T ss_pred CCCcEEEcCCCCC-C--cCCcch--hcCCCEEEccCCcC--CCC-C---CCCCCCcEEEecCCccCccc-----Cccccc
Confidence 4455666666422 2 122211 14788888887643 211 0 12468999999888776321 134688
Q ss_pred cEEeeccCCCCCC-CCCCCCCcEEecCCCccCChhHHHHHHhccCCCcEEecCCCCCCChhhhhhhccCCCceEEEecCC
Q 007252 329 VEIGLSKCLGVTN-TDSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLC 407 (611)
Q Consensus 329 ~~L~l~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 407 (611)
++|+++++. +.. .....+|+.|+++++. +.. +....++|+.|++++ +.+.... . -..+|+.|.+++|
T Consensus 265 ~~L~Ls~N~-L~~Lp~lp~~L~~L~Ls~N~-Lt~-----LP~~p~~L~~LdLS~-N~L~~Lp--~--lp~~L~~L~Ls~N 332 (788)
T PRK15387 265 LELSIFSNP-LTHLPALPSGLCKLWIFGNQ-LTS-----LPVLPPGLQELSVSD-NQLASLP--A--LPSELCKLWAYNN 332 (788)
T ss_pred ceeeccCCc-hhhhhhchhhcCEEECcCCc-ccc-----ccccccccceeECCC-CccccCC--C--CcccccccccccC
Confidence 888887764 222 2234578888887753 332 111346888898888 5665321 1 1245777877776
Q ss_pred CCCChHhHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhcCccCceecccccCCCChHHHHHhhCCCCCCEEecCCCccc
Q 007252 408 ENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKI 487 (611)
Q Consensus 408 ~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~c~~l 487 (611)
.++. ++...++|+.|+++++ .++. +.. ..++|+.|++++ +.++... . ..++|+.|++++ +.+
T Consensus 333 -~L~~-----LP~lp~~Lq~LdLS~N-~Ls~--LP~---lp~~L~~L~Ls~-N~L~~LP--~--l~~~L~~LdLs~-N~L 394 (788)
T PRK15387 333 -QLTS-----LPTLPSGLQELSVSDN-QLAS--LPT---LPSELYKLWAYN-NRLTSLP--A--LPSGLKELIVSG-NRL 394 (788)
T ss_pred -cccc-----ccccccccceEecCCC-ccCC--CCC---CCcccceehhhc-cccccCc--c--cccccceEEecC-Ccc
Confidence 4432 2212357899999885 5542 111 235788888877 4555321 1 135799999988 455
Q ss_pred cHHHHHHHHhcCCccCEeeccccCCCCHHHHHHHHhhCCCCCEEEeccCCCChhHHHHHhccccccccceeecccCCCH
Q 007252 488 TSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQNLRQINLSYCALSDMALCMVMGNMTRLQDAKLVHLTNCTR 566 (611)
Q Consensus 488 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~l~~~~~L~~l~l~~~~~~~~ 566 (611)
+.. ....++|+.|++++| .++... . ..++|+.|++++|.++..+ ..+..+++|+.|++.++ .++.
T Consensus 395 t~L-----P~l~s~L~~LdLS~N-~LssIP--~---l~~~L~~L~Ls~NqLt~LP--~sl~~L~~L~~LdLs~N-~Ls~ 459 (788)
T PRK15387 395 TSL-----PVLPSELKELMVSGN-RLTSLP--M---LPSGLLSLSVYRNQLTRLP--ESLIHLSSETTVNLEGN-PLSE 459 (788)
T ss_pred cCC-----CCcccCCCEEEccCC-cCCCCC--c---chhhhhhhhhccCcccccC--hHHhhccCCCeEECCCC-CCCc
Confidence 421 122468999999999 665422 1 2357888999999988654 35678888988888776 3443
No 31
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.62 E-value=8.8e-08 Score=99.93 Aligned_cols=264 Identities=20% Similarity=0.127 Sum_probs=125.3
Q ss_pred CcCcEEeccCcccChHHHHHhhhcCCCcEEEecCCCCCChhHHHHHHhcCCCccEEEeccccccChHHHHHHHhcCCCCc
Q 007252 199 LDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLL 278 (611)
Q Consensus 199 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~ 278 (611)
.+-..|+++.++++.. +..+. ++|+.|.+.++. ++. +....++|++|+++++. ++. ++ ...++|+
T Consensus 201 ~~~~~LdLs~~~LtsL-P~~l~--~~L~~L~L~~N~-Lt~-----LP~lp~~Lk~LdLs~N~-Lts--LP---~lp~sL~ 265 (788)
T PRK15387 201 NGNAVLNVGESGLTTL-PDCLP--AHITTLVIPDNN-LTS-----LPALPPELRTLEVSGNQ-LTS--LP---VLPPGLL 265 (788)
T ss_pred CCCcEEEcCCCCCCcC-Ccchh--cCCCEEEccCCc-CCC-----CCCCCCCCcEEEecCCc-cCc--cc---Ccccccc
Confidence 4466777777755431 11222 467888777643 432 11225677777777642 221 11 1234666
Q ss_pred eeccCCCCCccchhHHHHhhcCCCccEEEccCcccChHHHHHHHHhCCCCcEEeeccCCCCCCCCCCCCCcEEecCCCcc
Q 007252 279 QLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTDSCRGLVCLKIESCNM 358 (611)
Q Consensus 279 ~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~~ 358 (611)
.|++.++.. .. ... ..++|+.|++.+|.+.... ...++|+.|+++++.
T Consensus 266 ~L~Ls~N~L--~~-Lp~---lp~~L~~L~Ls~N~Lt~LP-----~~p~~L~~LdLS~N~--------------------- 313 (788)
T PRK15387 266 ELSIFSNPL--TH-LPA---LPSGLCKLWIFGNQLTSLP-----VLPPGLQELSVSDNQ--------------------- 313 (788)
T ss_pred eeeccCCch--hh-hhh---chhhcCEEECcCCcccccc-----ccccccceeECCCCc---------------------
Confidence 666665532 11 000 1235666666666544211 122455555555442
Q ss_pred CChhHHHHHHhccCCCcEEecCCCCCCChhhhhhhccC-CCceEEEecCCCCCChHhHHHHHhcCCCCcEEeccCCCCCC
Q 007252 359 ITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRC-SELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIG 437 (611)
Q Consensus 359 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~ 437 (611)
+.. +.. ...+|+.|.+++ +.++. +..+ .+|+.|+++++ .++. ++...++|+.|+++++ .++
T Consensus 314 L~~--Lp~---lp~~L~~L~Ls~-N~L~~-----LP~lp~~Lq~LdLS~N-~Ls~-----LP~lp~~L~~L~Ls~N-~L~ 375 (788)
T PRK15387 314 LAS--LPA---LPSELCKLWAYN-NQLTS-----LPTLPSGLQELSVSDN-QLAS-----LPTLPSELYKLWAYNN-RLT 375 (788)
T ss_pred ccc--CCC---Cccccccccccc-Ccccc-----ccccccccceEecCCC-ccCC-----CCCCCcccceehhhcc-ccc
Confidence 111 000 112445555554 33322 1111 24566666554 3332 1112345566666553 333
Q ss_pred HHHHHHHHhcCccCceecccccCCCChHHHHHhhCCCCCCEEecCCCccccHHHHHHHHhcCCccCEeeccccCCCCHHH
Q 007252 438 DDGLAALSNGCKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSG 517 (611)
Q Consensus 438 ~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 517 (611)
. +.. ..++|+.|++++ +.++.... ..++|+.|+++++ .++.. .. ...+|+.|++++| .++..+
T Consensus 376 ~--LP~---l~~~L~~LdLs~-N~Lt~LP~----l~s~L~~LdLS~N-~LssI--P~---l~~~L~~L~Ls~N-qLt~LP 438 (788)
T PRK15387 376 S--LPA---LPSGLKELIVSG-NRLTSLPV----LPSELKELMVSGN-RLTSL--PM---LPSGLLSLSVYRN-QLTRLP 438 (788)
T ss_pred c--Ccc---cccccceEEecC-CcccCCCC----cccCCCEEEccCC-cCCCC--Cc---chhhhhhhhhccC-cccccC
Confidence 1 111 124566777766 34442111 1346777777773 44421 11 1345677777777 665321
Q ss_pred HHHHHhhCCCCCEEEeccCCCChhHHHHHh
Q 007252 518 FWALAYYSQNLRQINLSYCALSDMALCMVM 547 (611)
Q Consensus 518 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~~l 547 (611)
..+ ..+++|+.|++++|+++.... ..+
T Consensus 439 -~sl-~~L~~L~~LdLs~N~Ls~~~~-~~L 465 (788)
T PRK15387 439 -ESL-IHLSSETTVNLEGNPLSERTL-QAL 465 (788)
T ss_pred -hHH-hhccCCCeEECCCCCCCchHH-HHH
Confidence 112 235777888888888776655 444
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.58 E-value=1.5e-08 Score=85.49 Aligned_cols=130 Identities=22% Similarity=0.270 Sum_probs=32.1
Q ss_pred CCCCcEEeccCCCCCCHHHHHHHHhcCccCceecccccCCCChHHHHHhhCCCCCCEEecCCCccccHHHHHHHHhcCCc
Q 007252 422 CLRIQGLDLYKCSGIGDDGLAALSNGCKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKR 501 (611)
Q Consensus 422 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 501 (611)
+.++++|++.++ .++. +..+...+.+|+.|++++ +.++. +..+..++.|+.|++++ +.+++.. ..+...+|+
T Consensus 18 ~~~~~~L~L~~n-~I~~--Ie~L~~~l~~L~~L~Ls~-N~I~~--l~~l~~L~~L~~L~L~~-N~I~~i~-~~l~~~lp~ 89 (175)
T PF14580_consen 18 PVKLRELNLRGN-QIST--IENLGATLDKLEVLDLSN-NQITK--LEGLPGLPRLKTLDLSN-NRISSIS-EGLDKNLPN 89 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TT-S--S----TT----TT--EEE--S-S---S-C-HHHHHH-TT
T ss_pred cccccccccccc-cccc--ccchhhhhcCCCEEECCC-CCCcc--ccCccChhhhhhcccCC-CCCCccc-cchHHhCCc
Confidence 345566666654 3321 222322345566666665 23442 22344455566666655 4444321 112223555
Q ss_pred cCEeeccccCCCCHHH-HHHHHhhCCCCCEEEeccCCCChhHHH--HHhccccccccceeecc
Q 007252 502 LADLDLKHCAKIDDSG-FWALAYYSQNLRQINLSYCALSDMALC--MVMGNMTRLQDAKLVHL 561 (611)
Q Consensus 502 L~~L~l~~c~~l~~~~-~~~~~~~~~~L~~L~l~~~~l~~~~~~--~~l~~~~~L~~l~l~~~ 561 (611)
|++|++++| ++.+.. +..+ ..+|+|+.|++.+|++++..-- ..+..+|+|+.|+-...
T Consensus 90 L~~L~L~~N-~I~~l~~l~~L-~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 90 LQELYLSNN-KISDLNELEPL-SSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp --EEE-TTS----SCCCCGGG-GG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred CCEEECcCC-cCCChHHhHHH-HcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence 666666555 443311 1222 2245556666655554322110 23334555555554333
No 33
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.50 E-value=1.6e-07 Score=82.96 Aligned_cols=205 Identities=14% Similarity=0.122 Sum_probs=132.8
Q ss_pred CcEEEecCCCCCChhHHHHHHhcCCCccEEEeccccccChHHHHHHHhcCCCCceeccCCCCCccchhHHHHh-hcCCCc
Q 007252 225 LESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHM-RDLKNL 303 (611)
Q Consensus 225 L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l-~~~~~L 303 (611)
++-+.+.+|..-+...+..++..+..++++++.++....-..+..+..++|.|+.|+++.+.. .. .+..+ ....+|
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L--~s-~I~~lp~p~~nl 123 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSL--SS-DIKSLPLPLKNL 123 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcC--CC-ccccCcccccce
Confidence 344555555433334456677767888888888865555566778888888888888876643 21 12222 345588
Q ss_pred cEEEccCcccChHHHHHHHHhCCCCcEEeeccCC----CCCC---CCCCCCCcEEecCCCccCChhHHHHHHhccCCCcE
Q 007252 304 EAITMDGARISDSCFQTISFNCKSLVEIGLSKCL----GVTN---TDSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEE 376 (611)
Q Consensus 304 ~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~----~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 376 (611)
+.|.+.|+.+............|.+++|+++.+. +..+ ....+.+++++..+|....+.....+.+.+|++..
T Consensus 124 ~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~s 203 (418)
T KOG2982|consen 124 RVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNS 203 (418)
T ss_pred EEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchh
Confidence 9999999888888887777788888888888762 1111 33445777788887776666666667777888888
Q ss_pred EecCCCCCCChhhhhhhccCCCceEEEecCCCCCCh-HhHHHHHhcCCCCcEEeccCCC
Q 007252 377 IDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISD-KGLFYIASNCLRIQGLDLYKCS 434 (611)
Q Consensus 377 L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~l~~~~~~L~~L~l~~~~ 434 (611)
+.+..|.--+...-+..-.+|.+..|.++.. ++.+ +.+..+. .+++|..|.+.+.+
T Consensus 204 v~v~e~PlK~~s~ek~se~~p~~~~LnL~~~-~idswasvD~Ln-~f~~l~dlRv~~~P 260 (418)
T KOG2982|consen 204 VFVCEGPLKTESSEKGSEPFPSLSCLNLGAN-NIDSWASVDALN-GFPQLVDLRVSENP 260 (418)
T ss_pred eeeecCcccchhhcccCCCCCcchhhhhccc-ccccHHHHHHHc-CCchhheeeccCCc
Confidence 8887743222222334445666667777665 4433 3344443 67888888777643
No 34
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.44 E-value=5.2e-06 Score=72.67 Aligned_cols=221 Identities=18% Similarity=0.293 Sum_probs=132.0
Q ss_pred HHHHhhcCCCccEEEccCcccChHHHHHHHHhCCCCcEEeeccCCCCCCCCCCCCCcEEecCCCc--cCChh---H----
Q 007252 293 LLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTDSCRGLVCLKIESCN--MITEK---G---- 363 (611)
Q Consensus 293 ~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~--~~~~~---~---- 363 (611)
.+..+..+..++.++++||.+..+....+.....+-+.|.+ .+++... ...+. .
T Consensus 22 v~eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~v-----------------vnfsd~ftgr~kde~~~~L~~L 84 (388)
T COG5238 22 VVEELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRV-----------------VNFSDAFTGRDKDELYSNLVML 84 (388)
T ss_pred HHHHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeE-----------------eehhhhhhcccHHHHHHHHHHH
Confidence 45555567788888888888888777766544433332222 2222100 01111 1
Q ss_pred HHHHHhccCCCcEEecCCCCCCChhhh----hhhccCCCceEEEecCCCCCChHh---H----HHH-----HhcCCCCcE
Q 007252 364 LYQLGSFCLRLEEIDLTDCNGVNDKGL----EYLSRCSELLFLKLGLCENISDKG---L----FYI-----ASNCLRIQG 427 (611)
Q Consensus 364 ~~~~~~~~~~L~~L~l~~~~~~~~~~~----~~l~~~~~L~~L~l~~~~~~~~~~---~----~~l-----~~~~~~L~~ 427 (611)
++.+. .||.|+.++++. +.+..... ..+++...|++|.+++| .+...+ + ..+ +..-|.|+.
T Consensus 85 l~aLl-kcp~l~~v~LSD-NAfg~~~~e~L~d~is~~t~l~HL~l~Nn-GlGp~aG~rigkal~~la~nKKaa~kp~Le~ 161 (388)
T COG5238 85 LKALL-KCPRLQKVDLSD-NAFGSEFPEELGDLISSSTDLVHLKLNNN-GLGPIAGGRIGKALFHLAYNKKAADKPKLEV 161 (388)
T ss_pred HHHHh-cCCcceeeeccc-cccCcccchHHHHHHhcCCCceeEEeecC-CCCccchhHHHHHHHHHHHHhhhccCCCceE
Confidence 12222 678888888887 55544433 44556778888888877 333221 1 111 224577888
Q ss_pred EeccCCCCCCH---HHHHHHHhcCccCceecccccCCCChHHHHHh-----hCCCCCCEEecCCCccccHHHHHHH---H
Q 007252 428 LDLYKCSGIGD---DGLAALSNGCKKLKKLNLSYCVNVTDRGMEHI-----RFIEDLSDLELRGLTKITSAGLTAL---A 496 (611)
Q Consensus 428 L~l~~~~~~~~---~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l-----~~~~~L~~L~l~~c~~l~~~~~~~~---~ 496 (611)
+....+ .+.+ .-.....+.-.+|+.+.+.+ +.|...++..+ ..+.+|+.|++.. +.++..+-..+ .
T Consensus 162 vicgrN-Rlengs~~~~a~~l~sh~~lk~vki~q-NgIrpegv~~L~~~gl~y~~~LevLDlqD-Ntft~~gS~~La~al 238 (388)
T COG5238 162 VICGRN-RLENGSKELSAALLESHENLKEVKIQQ-NGIRPEGVTMLAFLGLFYSHSLEVLDLQD-NTFTLEGSRYLADAL 238 (388)
T ss_pred EEeccc-hhccCcHHHHHHHHHhhcCceeEEeee-cCcCcchhHHHHHHHHHHhCcceeeeccc-cchhhhhHHHHHHHh
Confidence 877653 3322 22233333336888888888 67887766543 3688899999987 45655443333 3
Q ss_pred hcCCccCEeeccccCCCCHHHHHHHHhh-----CCCCCEEEeccCC
Q 007252 497 AGCKRLADLDLKHCAKIDDSGFWALAYY-----SQNLRQINLSYCA 537 (611)
Q Consensus 497 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~-----~~~L~~L~l~~~~ 537 (611)
..++.|++|.+.+| .++..+...+... .|+|+.|...+|.
T Consensus 239 ~~W~~lrEL~lnDC-lls~~G~~~v~~~f~e~~~p~l~~L~~~Yne 283 (388)
T COG5238 239 CEWNLLRELRLNDC-LLSNEGVKSVLRRFNEKFVPNLMPLPGDYNE 283 (388)
T ss_pred cccchhhhccccch-hhccccHHHHHHHhhhhcCCCccccccchhh
Confidence 45678899999999 7776665554432 6788888888886
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.42 E-value=1.1e-07 Score=84.04 Aligned_cols=129 Identities=19% Similarity=0.199 Sum_probs=80.2
Q ss_pred cCCCCcEEeccCCCCCCHHHHHHHHhcCccCceecccccCCCChHHHHHhhCCCCCCEEecCCCccccHHHHHHHHhcCC
Q 007252 421 NCLRIQGLDLYKCSGIGDDGLAALSNGCKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCK 500 (611)
Q Consensus 421 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~ 500 (611)
.++-|++++++++ .++ .+..-.+-.|.++.|++++ +.+...+ .+..+++|..|++++ +.++. +..+...+.
T Consensus 282 TWq~LtelDLS~N-~I~--~iDESvKL~Pkir~L~lS~-N~i~~v~--nLa~L~~L~~LDLS~-N~Ls~--~~Gwh~KLG 352 (490)
T KOG1259|consen 282 TWQELTELDLSGN-LIT--QIDESVKLAPKLRRLILSQ-NRIRTVQ--NLAELPQLQLLDLSG-NLLAE--CVGWHLKLG 352 (490)
T ss_pred hHhhhhhcccccc-chh--hhhhhhhhccceeEEeccc-cceeeeh--hhhhcccceEeeccc-chhHh--hhhhHhhhc
Confidence 4566777888774 443 2333334457888888887 4554332 356678888888887 44432 222233466
Q ss_pred ccCEeeccccCCCCHHHHHHHHhhCCCCCEEEeccCCCChhHHHHHhccccccccceeeccc
Q 007252 501 RLADLDLKHCAKIDDSGFWALAYYSQNLRQINLSYCALSDMALCMVMGNMTRLQDAKLVHLT 562 (611)
Q Consensus 501 ~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~l~~~~~L~~l~l~~~~ 562 (611)
+.+.|.+++| .+.+. ..+ ..+-+|..|++++|+|........++++|.|+++.+.+.|
T Consensus 353 NIKtL~La~N-~iE~L--SGL-~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 353 NIKTLKLAQN-KIETL--SGL-RKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred CEeeeehhhh-hHhhh--hhh-HhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 7888888877 55332 122 2235778888888887665555677788888888777765
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.42 E-value=7.9e-08 Score=81.23 Aligned_cols=129 Identities=23% Similarity=0.299 Sum_probs=52.4
Q ss_pred CccCceecccccCCCChHHHHHhh-CCCCCCEEecCCCccccHHHHHHHHhcCCccCEeeccccCCCCHHHHHHHHhhCC
Q 007252 448 CKKLKKLNLSYCVNVTDRGMEHIR-FIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQ 526 (611)
Q Consensus 448 ~~~L~~L~l~~c~~l~~~~~~~l~-~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~ 526 (611)
+.++++|+|.+ ..|+. ++.++ .+.+|+.|++++ +.++... . ...++.|+.|++++| .+++.+ ..+...+|
T Consensus 18 ~~~~~~L~L~~-n~I~~--Ie~L~~~l~~L~~L~Ls~-N~I~~l~--~-l~~L~~L~~L~L~~N-~I~~i~-~~l~~~lp 88 (175)
T PF14580_consen 18 PVKLRELNLRG-NQIST--IENLGATLDKLEVLDLSN-NQITKLE--G-LPGLPRLKTLDLSNN-RISSIS-EGLDKNLP 88 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TT-S--S--T--T-----TT--EEE--SS----S-C-HHHHHH-T
T ss_pred ccccccccccc-ccccc--ccchhhhhcCCCEEECCC-CCCcccc--C-ccChhhhhhcccCCC-CCCccc-cchHHhCC
Confidence 45788888888 35553 34455 478899999988 4565422 2 234788999999998 776542 12334568
Q ss_pred CCCEEEeccCCCChhHHHHHhccccccccceeecccCCCHHHHHHHHhhcCCCccchhh
Q 007252 527 NLRQINLSYCALSDMALCMVMGNMTRLQDAKLVHLTNCTREGFELALRSCCMRIKKVKL 585 (611)
Q Consensus 527 ~L~~L~l~~~~l~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~c~~l~~l~l 585 (611)
+|++|++++|.|.+......++.+++|+.|++.+.|=..........+..+|+|+.|+-
T Consensus 89 ~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 89 NLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp T--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred cCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 99999999998655433256778888888888877655556667777777899998883
No 37
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.38 E-value=7.4e-08 Score=62.64 Aligned_cols=39 Identities=18% Similarity=0.246 Sum_probs=33.1
Q ss_pred cccCCcHHHHHHHHhhhCCCCCchhhHhhchhHHhhhccc
Q 007252 6 ALDVLTEDLLVRVREKIGDELDSKTWRLVCKEFSRVDSVT 45 (611)
Q Consensus 6 ~~~~LP~e~l~~If~~L~~~~~~~~~~~vc~~w~~~~~~~ 45 (611)
+|.+||+|++.+||++|+ ..|+.+++.|||+|++++...
T Consensus 2 ~~~~LP~~il~~Il~~l~-~~~~~~l~~vsk~~~~~~~~~ 40 (48)
T PF00646_consen 2 PLSDLPDEILQEILSYLD-PKDLLRLSLVSKRWRSLVDSP 40 (48)
T ss_dssp HHHHS-HHHHHHHHHTS--HHHHHHHCTT-HHHHHHHTTH
T ss_pred CHHHCCHHHHHHHHHHCc-HHHHHHHHHHhhHHHHHHcCC
Confidence 578899999999999999 999999999999999987665
No 38
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.37 E-value=4.5e-07 Score=80.21 Aligned_cols=65 Identities=18% Similarity=0.132 Sum_probs=33.8
Q ss_pred CCCCCEEecCCCccccHHHHHHHHhcCCccCEeeccccCCCCH-HHHHHHHhhCCCCCEEEeccCCCCh
Q 007252 473 IEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDD-SGFWALAYYSQNLRQINLSYCALSD 540 (611)
Q Consensus 473 ~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~-~~~~~~~~~~~~L~~L~l~~~~l~~ 540 (611)
+|++..+.+..|+ +.+..-......+|.+-.|.++.+ ++.+ ..+.++.. +|.|..|.++.+++.+
T Consensus 198 Fpnv~sv~v~e~P-lK~~s~ek~se~~p~~~~LnL~~~-~idswasvD~Ln~-f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 198 FPNVNSVFVCEGP-LKTESSEKGSEPFPSLSCLNLGAN-NIDSWASVDALNG-FPQLVDLRVSENPLSD 263 (418)
T ss_pred cccchheeeecCc-ccchhhcccCCCCCcchhhhhccc-ccccHHHHHHHcC-CchhheeeccCCcccc
Confidence 5566666655543 222222223334555666666655 4433 22333333 4777777777777543
No 39
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.34 E-value=2.9e-06 Score=74.17 Aligned_cols=100 Identities=11% Similarity=0.097 Sum_probs=49.6
Q ss_pred CCcCcEEeccCcccChHHHHHhhh----cCCCcEEEecCCCCCChhHHHHHHhcCCCccEEEeccccccChHHHHHHHhc
Q 007252 198 CLDLKSLDVSYLKLTNDSFCSIAT----LAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRG 273 (611)
Q Consensus 198 ~~~L~~L~l~~~~~~~~~~~~l~~----~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~ 273 (611)
...++.+++++|.+......++++ -.+|+..++++.. +......+..++ .-+....-+
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~f--tgr~kde~~~~L----------------~~Ll~aLlk 90 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAF--TGRDKDELYSNL----------------VMLLKALLK 90 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhh--hcccHHHHHHHH----------------HHHHHHHhc
Confidence 567777777777777766666544 3455555555321 111111111100 011222334
Q ss_pred CCCCceeccCCCCCc--cchhHHHHhhcCCCccEEEccCcccCh
Q 007252 274 HSGLLQLDAGHCFSE--LSTTLLHHMRDLKNLEAITMDGARISD 315 (611)
Q Consensus 274 ~~~L~~L~l~~~~~~--~~~~~~~~l~~~~~L~~L~l~~~~~~~ 315 (611)
||.|+..+++++..- ..+.....+++...|++|.+++|.+.+
T Consensus 91 cp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp 134 (388)
T COG5238 91 CPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGP 134 (388)
T ss_pred CCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCc
Confidence 555555555544321 223344556666677777777776544
No 40
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.34 E-value=5.6e-07 Score=75.16 Aligned_cols=88 Identities=25% Similarity=0.329 Sum_probs=61.0
Q ss_pred ceEEEecCCCCCChHhHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhcCccCceecccccCCCChHHHHHhhCCCCCCE
Q 007252 399 LLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKKLKKLNLSYCVNVTDRGMEHIRFIEDLSD 478 (611)
Q Consensus 399 L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~L~~ 478 (611)
++.++-+++ .+..+++..+. .++.++.|.+.+|..+.|.++..+....++|+.|+|++|+.|++.++..+.++++|+.
T Consensus 103 IeaVDAsds-~I~~eGle~L~-~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 103 IEAVDASDS-SIMYEGLEHLR-DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred EEEEecCCc-hHHHHHHHHHh-ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 444544544 56666666655 5677777777777777777777776666777777777777777777777777777777
Q ss_pred EecCCCcccc
Q 007252 479 LELRGLTKIT 488 (611)
Q Consensus 479 L~l~~c~~l~ 488 (611)
|.+.+.+.+.
T Consensus 181 L~l~~l~~v~ 190 (221)
T KOG3864|consen 181 LHLYDLPYVA 190 (221)
T ss_pred HHhcCchhhh
Confidence 7777655443
No 41
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.25 E-value=2.4e-06 Score=89.90 Aligned_cols=244 Identities=15% Similarity=0.061 Sum_probs=137.6
Q ss_pred CCCceeccCCCCCccchhHHHHhhcCCCccEEEccCcccChHHHHHHHHhCCCCcEEeeccCCCCCC--CCCCCCCcEEe
Q 007252 275 SGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTN--TDSCRGLVCLK 352 (611)
Q Consensus 275 ~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~L~~L~ 352 (611)
.+...|++.+... .. ....+ .+.|+.|++++|.+...... ..++|++|+++++. +.. ....++|+.|+
T Consensus 178 ~~~~~L~L~~~~L--ts-LP~~I--p~~L~~L~Ls~N~LtsLP~~----l~~nL~~L~Ls~N~-LtsLP~~l~~~L~~L~ 247 (754)
T PRK15370 178 NNKTELRLKILGL--TT-IPACI--PEQITTLILDNNELKSLPEN----LQGNIKTLYANSNQ-LTSIPATLPDTIQEME 247 (754)
T ss_pred cCceEEEeCCCCc--Cc-CCccc--ccCCcEEEecCCCCCcCChh----hccCCCEEECCCCc-cccCChhhhccccEEE
Confidence 4567777766532 11 11111 24789999998877642211 23589999998764 333 22334788888
Q ss_pred cCCCccCChhHHHHHHhccCCCcEEecCCCCCCChhhhhhhccCCCceEEEecCCCCCChHhHHHHHhcCCCCcEEeccC
Q 007252 353 IESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYK 432 (611)
Q Consensus 353 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~ 432 (611)
+++|. +.... ..+ ..+|+.|++++ +.++... ..+ .++|+.|++++| .++... .. ..++|+.|++++
T Consensus 248 Ls~N~-L~~LP-~~l---~s~L~~L~Ls~-N~L~~LP-~~l--~~sL~~L~Ls~N-~Lt~LP-~~---lp~sL~~L~Ls~ 313 (754)
T PRK15370 248 LSINR-ITELP-ERL---PSALQSLDLFH-NKISCLP-ENL--PEELRYLSVYDN-SIRTLP-AH---LPSGITHLNVQS 313 (754)
T ss_pred CcCCc-cCcCC-hhH---hCCCCEEECcC-CccCccc-ccc--CCCCcEEECCCC-ccccCc-cc---chhhHHHHHhcC
Confidence 88765 32211 111 24788888886 5665321 112 247888888876 444211 00 124677788877
Q ss_pred CCCCCHHHHHHHHhcCccCceecccccCCCChHHHHHhhCCCCCCEEecCCCccccHHHHHHHHhcCCccCEeeccccCC
Q 007252 433 CSGIGDDGLAALSNGCKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAK 512 (611)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~ 512 (611)
+ .++.. .. ...++|+.|++++| .++.... .+ .++|+.|++++| +++... ..+ .++|+.|++++| .
T Consensus 314 N-~Lt~L--P~--~l~~sL~~L~Ls~N-~Lt~LP~-~l--~~sL~~L~Ls~N-~L~~LP-~~l---p~~L~~LdLs~N-~ 378 (754)
T PRK15370 314 N-SLTAL--PE--TLPPGLKTLEAGEN-ALTSLPA-SL--PPELQVLDVSKN-QITVLP-ETL---PPTITTLDVSRN-A 378 (754)
T ss_pred C-ccccC--Cc--cccccceeccccCC-ccccCCh-hh--cCcccEEECCCC-CCCcCC-hhh---cCCcCEEECCCC-c
Confidence 5 44321 11 11367888888885 4443221 12 368888888885 454211 111 358888888888 6
Q ss_pred CCHHHHHHHHhhCCCCCEEEeccCCCChhH--HHHHhccccccccceeecc
Q 007252 513 IDDSGFWALAYYSQNLRQINLSYCALSDMA--LCMVMGNMTRLQDAKLVHL 561 (611)
Q Consensus 513 l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~--~~~~l~~~~~L~~l~l~~~ 561 (611)
++.... .+ .++|+.|++++|.++..+ +......++++..+.+.+.
T Consensus 379 Lt~LP~-~l---~~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~N 425 (754)
T PRK15370 379 LTNLPE-NL---PAALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYN 425 (754)
T ss_pred CCCCCH-hH---HHHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCC
Confidence 653221 11 136888888888866432 1123344577777777655
No 42
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.17 E-value=1.9e-06 Score=72.05 Aligned_cols=91 Identities=31% Similarity=0.422 Sum_probs=79.4
Q ss_pred CCcEEecCCCCCCChhhhhhhccCCCceEEEecCCCCCChHhHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhcCccCc
Q 007252 373 RLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKKLK 452 (611)
Q Consensus 373 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 452 (611)
.++.++-++ ..+..+++..+..++.++.|.+.+|..+.|.++..+..-.++|+.|++++|+.||+.++..+.+ +++|+
T Consensus 102 ~IeaVDAsd-s~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~-lknLr 179 (221)
T KOG3864|consen 102 KIEAVDASD-SSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLK-LKNLR 179 (221)
T ss_pred eEEEEecCC-chHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHH-hhhhH
Confidence 567778788 6888899999999999999999999999999999998888999999999999999999988854 79999
Q ss_pred eecccccCCCChH
Q 007252 453 KLNLSYCVNVTDR 465 (611)
Q Consensus 453 ~L~l~~c~~l~~~ 465 (611)
.|.|.+-+.+.+.
T Consensus 180 ~L~l~~l~~v~~~ 192 (221)
T KOG3864|consen 180 RLHLYDLPYVANL 192 (221)
T ss_pred HHHhcCchhhhch
Confidence 9999876555443
No 43
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.17 E-value=6.9e-06 Score=86.54 Aligned_cols=148 Identities=14% Similarity=0.089 Sum_probs=75.5
Q ss_pred CCCcEEecCCCCCCChhhhhhhccCCCceEEEecCCCCCChHhHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhcCccC
Q 007252 372 LRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKKL 451 (611)
Q Consensus 372 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 451 (611)
++|+.|++++ +.++.... .+ .++|+.|+++++ .++.... ...++|+.|++++| .++. +... -+++|
T Consensus 283 ~sL~~L~Ls~-N~Lt~LP~-~l--p~sL~~L~Ls~N-~Lt~LP~----~l~~sL~~L~Ls~N-~Lt~--LP~~--l~~sL 348 (754)
T PRK15370 283 EELRYLSVYD-NSIRTLPA-HL--PSGITHLNVQSN-SLTALPE----TLPPGLKTLEAGEN-ALTS--LPAS--LPPEL 348 (754)
T ss_pred CCCcEEECCC-CccccCcc-cc--hhhHHHHHhcCC-ccccCCc----cccccceeccccCC-cccc--CChh--hcCcc
Confidence 3566666666 34432110 01 134566666654 3332110 02356777777765 3331 1111 13577
Q ss_pred ceecccccCCCChHHHHHhhCCCCCCEEecCCCccccHHHHHHHHhcCCccCEeeccccCCCCHH--HHHHHHhhCCCCC
Q 007252 452 KKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDS--GFWALAYYSQNLR 529 (611)
Q Consensus 452 ~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~--~~~~~~~~~~~L~ 529 (611)
+.|++++| +++.... .+ .++|+.|++++| .++... ..+. .+|+.|++++| ++... .+.......+++.
T Consensus 349 ~~L~Ls~N-~L~~LP~-~l--p~~L~~LdLs~N-~Lt~LP-~~l~---~sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~ 418 (754)
T PRK15370 349 QVLDVSKN-QITVLPE-TL--PPTITTLDVSRN-ALTNLP-ENLP---AALQIMQASRN-NLVRLPESLPHFRGEGPQPT 418 (754)
T ss_pred cEEECCCC-CCCcCCh-hh--cCCcCEEECCCC-cCCCCC-HhHH---HHHHHHhhccC-CcccCchhHHHHhhcCCCcc
Confidence 77777774 4442211 12 357788888774 444211 1121 25777888887 55432 2333334457788
Q ss_pred EEEeccCCCChhHH
Q 007252 530 QINLSYCALSDMAL 543 (611)
Q Consensus 530 ~L~l~~~~l~~~~~ 543 (611)
.|++.+|+++...+
T Consensus 419 ~L~L~~Npls~~tl 432 (754)
T PRK15370 419 RIIVEYNPFSERTI 432 (754)
T ss_pred EEEeeCCCccHHHH
Confidence 88888888775544
No 44
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.16 E-value=9.6e-07 Score=55.21 Aligned_cols=35 Identities=17% Similarity=0.258 Sum_probs=32.7
Q ss_pred CcHHHHHHHHhhhCCCCCchhhHhhchhHHhhhccc
Q 007252 10 LTEDLLVRVREKIGDELDSKTWRLVCKEFSRVDSVT 45 (611)
Q Consensus 10 LP~e~l~~If~~L~~~~~~~~~~~vc~~w~~~~~~~ 45 (611)
||+|++.+||.+++ ..|+.+++.|||+|+.++...
T Consensus 1 lP~~ll~~I~~~l~-~~d~~~~~~vc~~~~~~~~~~ 35 (41)
T smart00256 1 LPDEILEEILSKLP-PKDLLRLRKVSRRWRSLIDSH 35 (41)
T ss_pred CCHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhcCh
Confidence 79999999999999 999999999999999987664
No 45
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.12 E-value=4.1e-06 Score=89.72 Aligned_cols=40 Identities=23% Similarity=0.436 Sum_probs=22.0
Q ss_pred CCCCcEEecCCCccCChhHHHHHHhccCCCcEEecCCCCCCCh
Q 007252 345 CRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVND 387 (611)
Q Consensus 345 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 387 (611)
++++..+.+.+|....+..... ..|+|+.|.+..|..+.+
T Consensus 746 f~~l~~~~~~~~~~~r~l~~~~---f~~~L~~l~l~~~~~~e~ 785 (889)
T KOG4658|consen 746 FPNLSKVSILNCHMLRDLTWLL---FAPHLTSLSLVSCRLLED 785 (889)
T ss_pred HHHHHHHHhhccccccccchhh---ccCcccEEEEeccccccc
Confidence 4455555555555444333222 247888888887654443
No 46
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.05 E-value=3.9e-06 Score=89.92 Aligned_cols=231 Identities=16% Similarity=0.096 Sum_probs=126.9
Q ss_pred CCccceeecccccccChHHHHHHHHcCCcCcEEeccCcccChHHHHHhhhcCCCcEEEecCCCCCChhHHHHHHhcCCCc
Q 007252 172 CVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLL 251 (611)
Q Consensus 172 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 251 (611)
++.|++|-+.++...-......+...+|.|+.||+++|.-....+..++.+-+||+|+++++. +.. -+..+.. +..|
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~-I~~-LP~~l~~-Lk~L 620 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTG-ISH-LPSGLGN-LKKL 620 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCC-ccc-cchHHHH-HHhh
Confidence 567888777765220112223345567888888888774445556677788888888888743 431 1222333 6778
Q ss_pred cEEEeccccccChHHHHHHHhcCCCCceeccCCCCCccchhHHHHhhcCCCccEEEccCcccChHHHHHHHHhCCCC---
Q 007252 252 KTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSL--- 328 (611)
Q Consensus 252 ~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L--- 328 (611)
.+|++......... +.+...+++|++|.+.......+......+..+.+|+.+....... ..+..+. ..+.|
T Consensus 621 ~~Lnl~~~~~l~~~--~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~-~~~~L~~~ 695 (889)
T KOG4658|consen 621 IYLNLEVTGRLESI--PGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLL-GMTRLRSL 695 (889)
T ss_pred heeccccccccccc--cchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhh-hhHHHHHH
Confidence 88888764433222 4455567888888887654224444566666666666666643332 1111110 11222
Q ss_pred -cEEeeccCCCCCC---CCCCCCCcEEecCCCccCChhH--H--HHHHhccCCCcEEecCCCCCCChhhhhhhccCCCce
Q 007252 329 -VEIGLSKCLGVTN---TDSCRGLVCLKIESCNMITEKG--L--YQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELL 400 (611)
Q Consensus 329 -~~L~l~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~--~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 400 (611)
+.+.+.++...+. .....+|+.|.+.+|....... . ......++++..+.+..|....+.... .-.|+|+
T Consensus 696 ~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~--~f~~~L~ 773 (889)
T KOG4658|consen 696 LQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWL--LFAPHLT 773 (889)
T ss_pred hHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchh--hccCccc
Confidence 2222222221111 6778889999998876432111 0 000102445666666665555443322 2358999
Q ss_pred EEEecCCCCCCh
Q 007252 401 FLKLGLCENISD 412 (611)
Q Consensus 401 ~L~l~~~~~~~~ 412 (611)
+|.+..|..+.+
T Consensus 774 ~l~l~~~~~~e~ 785 (889)
T KOG4658|consen 774 SLSLVSCRLLED 785 (889)
T ss_pred EEEEeccccccc
Confidence 999999866654
No 47
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.89 E-value=5.6e-06 Score=73.51 Aligned_cols=130 Identities=19% Similarity=0.102 Sum_probs=79.4
Q ss_pred CCCceEEEecCCCCCChHhHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhcCccCceecccccCCCChHHHHHhhCCCC
Q 007252 396 CSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKKLKKLNLSYCVNVTDRGMEHIRFIED 475 (611)
Q Consensus 396 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~ 475 (611)
...|++++++++ .++.. ..-..-.|.++.|+++.+ .+.. +.. .+.+++|++|++++ +.++... .+-.++-+
T Consensus 283 Wq~LtelDLS~N-~I~~i--DESvKL~Pkir~L~lS~N-~i~~--v~n-La~L~~L~~LDLS~-N~Ls~~~-Gwh~KLGN 353 (490)
T KOG1259|consen 283 WQELTELDLSGN-LITQI--DESVKLAPKLRRLILSQN-RIRT--VQN-LAELPQLQLLDLSG-NLLAECV-GWHLKLGN 353 (490)
T ss_pred Hhhhhhcccccc-chhhh--hhhhhhccceeEEecccc-ceee--ehh-hhhcccceEeeccc-chhHhhh-hhHhhhcC
Confidence 456777888775 44321 111224588888888875 3332 222 23468888998888 4443321 22235778
Q ss_pred CCEEecCCCccccHHHHHHHHhcCCccCEeeccccCCCCHHHHHHHHhhCCCCCEEEeccCCCC
Q 007252 476 LSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQNLRQINLSYCALS 539 (611)
Q Consensus 476 L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~~~l~ 539 (611)
.++|.+++ +.+.+. ..+ ..+-+|..||+++| ++....--.-...+|-|+.+.+.+|++.
T Consensus 354 IKtL~La~-N~iE~L--SGL-~KLYSLvnLDl~~N-~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 354 IKTLKLAQ-NKIETL--SGL-RKLYSLVNLDLSSN-QIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred Eeeeehhh-hhHhhh--hhh-Hhhhhheecccccc-chhhHHHhcccccccHHHHHhhcCCCcc
Confidence 88888887 455332 122 23568889999988 6654332223344688899999999854
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.65 E-value=6.7e-06 Score=82.03 Aligned_cols=181 Identities=20% Similarity=0.168 Sum_probs=95.9
Q ss_pred CCCCCCCcEEecCCCccCChhHHHHHHhccCCCcEEecCCCCCCCh---hhhhh---hcc---CCCceEEEecCCCCCCh
Q 007252 342 TDSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVND---KGLEY---LSR---CSELLFLKLGLCENISD 412 (611)
Q Consensus 342 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~---l~~---~~~L~~L~l~~~~~~~~ 412 (611)
+..+..|+.|.+.+|+--...++..+- ..|++|--++ .++. ..... +.+ ...|.+.+.+++ .+.
T Consensus 105 ifpF~sLr~LElrg~~L~~~~GL~~lr---~qLe~LIC~~--Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN-~L~- 177 (1096)
T KOG1859|consen 105 IFPFRSLRVLELRGCDLSTAKGLQELR---HQLEKLICHN--SLDALRHVFASCGGDISNSPVWNKLATASFSYN-RLV- 177 (1096)
T ss_pred eccccceeeEEecCcchhhhhhhHHHH---Hhhhhhhhhc--cHHHHHHHHHHhccccccchhhhhHhhhhcchh-hHH-
Confidence 566778888888888755555555544 3455543332 1111 00000 111 123334434333 111
Q ss_pred HhHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhcCccCceecccccCCCChHHHHHhhCCCCCCEEecCCCccccHHHH
Q 007252 413 KGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGL 492 (611)
Q Consensus 413 ~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~c~~l~~~~~ 492 (611)
.+..-..-+|.|+.|+++++ ++++- . ....|+.|++|+|++ +.+.....-....+ +|..|.+++ +.++. +
T Consensus 178 -~mD~SLqll~ale~LnLshN-k~~~v--~-~Lr~l~~LkhLDlsy-N~L~~vp~l~~~gc-~L~~L~lrn-N~l~t--L 247 (1096)
T KOG1859|consen 178 -LMDESLQLLPALESLNLSHN-KFTKV--D-NLRRLPKLKHLDLSY-NCLRHVPQLSMVGC-KLQLLNLRN-NALTT--L 247 (1096)
T ss_pred -hHHHHHHHHHHhhhhccchh-hhhhh--H-HHHhccccccccccc-chhccccccchhhh-hheeeeecc-cHHHh--h
Confidence 11111224578888888874 55432 2 334578888888888 44443222111223 388888887 44432 2
Q ss_pred HHHHhcCCccCEeeccccCCCCHHHHHHHHhhCCCCCEEEeccCCCChh
Q 007252 493 TALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQNLRQINLSYCALSDM 541 (611)
Q Consensus 493 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~ 541 (611)
..+ .++.+|+.||+++| -+.+..--...-.+..|+.|++.||++--.
T Consensus 248 ~gi-e~LksL~~LDlsyN-ll~~hseL~pLwsLs~L~~L~LeGNPl~c~ 294 (1096)
T KOG1859|consen 248 RGI-ENLKSLYGLDLSYN-LLSEHSELEPLWSLSSLIVLWLEGNPLCCA 294 (1096)
T ss_pred hhH-HhhhhhhccchhHh-hhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence 222 35778888888887 554433222223346788888888885433
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.61 E-value=1.7e-05 Score=79.17 Aligned_cols=53 Identities=17% Similarity=0.149 Sum_probs=29.1
Q ss_pred HHHHhccCCCcEEecCCCCCCChhhhhhhccCCCceEEEecCCCCCChHhHHH
Q 007252 365 YQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFY 417 (611)
Q Consensus 365 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 417 (611)
+.+..-+++++.|.+-....-+..+.-.+.++..|+.|.+.+|+--+..|+..
T Consensus 77 q~i~d~lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~~~GL~~ 129 (1096)
T KOG1859|consen 77 QRILDFLQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLSTAKGLQE 129 (1096)
T ss_pred HHHHHHHhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhhhhhhHH
Confidence 33344445555555544222222324456678889999998885444444443
No 50
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.55 E-value=7.9e-06 Score=56.27 Aligned_cols=59 Identities=22% Similarity=0.238 Sum_probs=37.9
Q ss_pred CccCEeeccccCCCCHHHHHHHHhhCCCCCEEEeccCCCChhHHHHHhccccccccceeecc
Q 007252 500 KRLADLDLKHCAKIDDSGFWALAYYSQNLRQINLSYCALSDMALCMVMGNMTRLQDAKLVHL 561 (611)
Q Consensus 500 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~l~~~~~L~~l~l~~~ 561 (611)
|+|++|++++| +++......+ ..+++|++|++++|.++.... .+|..+++|++|++.++
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f-~~l~~L~~L~l~~N~l~~i~~-~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSF-SNLPNLETLDLSNNNLTSIPP-DAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSS-TESEECTTTT-TTGTTESEEEETSSSESEEET-TTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCC-CCCccCHHHH-cCCCCCCEeEccCCccCccCH-HHHcCCCCCCEEeCcCC
Confidence 46677777777 6654432222 234777777777777766665 66677777777777665
No 51
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.33 E-value=4.6e-06 Score=67.62 Aligned_cols=153 Identities=18% Similarity=0.128 Sum_probs=82.5
Q ss_pred cCCCceEEEecCCCCCChHhHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhcCccCceecccccCCCChHHHHHhhCCC
Q 007252 395 RCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKKLKKLNLSYCVNVTDRGMEHIRFIE 474 (611)
Q Consensus 395 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~ 474 (611)
.+..+..|.++.+ +++.... .++ .+.+|+.|.+++. .+++ +..-...+|+|+.|+++- +.+. ...+.++.+|
T Consensus 31 ~~s~ITrLtLSHN-Kl~~vpp-nia-~l~nlevln~~nn-qie~--lp~~issl~klr~lnvgm-nrl~-~lprgfgs~p 102 (264)
T KOG0617|consen 31 NMSNITRLTLSHN-KLTVVPP-NIA-ELKNLEVLNLSNN-QIEE--LPTSISSLPKLRILNVGM-NRLN-ILPRGFGSFP 102 (264)
T ss_pred chhhhhhhhcccC-ceeecCC-cHH-Hhhhhhhhhcccc-hhhh--cChhhhhchhhhheecch-hhhh-cCccccCCCc
Confidence 3445556666654 3332111 111 4577777777763 4432 222223457777777654 2222 1234566777
Q ss_pred CCCEEecCCCccccHHHHHHHHhcCCccCEeeccccCCCCHHHHHHHHhhCCCCCEEEeccCCCChhHHHHHhccccccc
Q 007252 475 DLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQNLRQINLSYCALSDMALCMVMGNMTRLQ 554 (611)
Q Consensus 475 ~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~l~~~~~L~ 554 (611)
.|+.|++.. +++....+..-+-.+..|+-|.++++ .+.. +..-...+++||.|.++.|.+-..+ ..++.+.+|+
T Consensus 103 ~levldlty-nnl~e~~lpgnff~m~tlralyl~dn-dfe~--lp~dvg~lt~lqil~lrdndll~lp--keig~lt~lr 176 (264)
T KOG0617|consen 103 ALEVLDLTY-NNLNENSLPGNFFYMTTLRALYLGDN-DFEI--LPPDVGKLTNLQILSLRDNDLLSLP--KEIGDLTRLR 176 (264)
T ss_pred hhhhhhccc-cccccccCCcchhHHHHHHHHHhcCC-Cccc--CChhhhhhcceeEEeeccCchhhCc--HHHHHHHHHH
Confidence 888888776 45554333222223456677777776 3322 1112233477888888888744333 3566777788
Q ss_pred cceeecc
Q 007252 555 DAKLVHL 561 (611)
Q Consensus 555 ~l~l~~~ 561 (611)
+|++.+.
T Consensus 177 elhiqgn 183 (264)
T KOG0617|consen 177 ELHIQGN 183 (264)
T ss_pred HHhcccc
Confidence 8877664
No 52
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=97.20 E-value=0.00014 Score=72.60 Aligned_cols=190 Identities=26% Similarity=0.331 Sum_probs=114.5
Q ss_pred hccCCCcEEecCCCCCCChhhhhhhcc----C-CCceEEEecCCCCCChHhHHHHHh---cCCCCcEEeccCCCCCCHHH
Q 007252 369 SFCLRLEEIDLTDCNGVNDKGLEYLSR----C-SELLFLKLGLCENISDKGLFYIAS---NCLRIQGLDLYKCSGIGDDG 440 (611)
Q Consensus 369 ~~~~~L~~L~l~~~~~~~~~~~~~l~~----~-~~L~~L~l~~~~~~~~~~~~~l~~---~~~~L~~L~l~~~~~~~~~~ 440 (611)
...++|+.|++++ +.+.+.+...+.. . ..++.|.+..| .+++.+...+.. ....++.++++.|. +...+
T Consensus 112 ~t~~~L~~L~l~~-n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c-~l~~~g~~~l~~~L~~~~~l~~l~l~~n~-l~~~g 188 (478)
T KOG4308|consen 112 KTLPTLGQLDLSG-NNLGDEGARLLCEGLRLPQCLLQTLELVSC-SLTSEGAAPLAAVLEKNEHLTELDLSLNG-LIELG 188 (478)
T ss_pred cccccHhHhhccc-CCCccHhHHHHHhhcccchHHHHHHHhhcc-cccccchHHHHHHHhcccchhHHHHHhcc-cchhh
Confidence 3557788888888 6777776655542 2 45677777776 666665554433 25667777777763 33444
Q ss_pred HHHHHhc-------CccCceecccccCCCChHHHHH----hhCCCC-CCEEecCCCccccHHHHHHHHhcC----CccCE
Q 007252 441 LAALSNG-------CKKLKKLNLSYCVNVTDRGMEH----IRFIED-LSDLELRGLTKITSAGLTALAAGC----KRLAD 504 (611)
Q Consensus 441 ~~~~~~~-------~~~L~~L~l~~c~~l~~~~~~~----l~~~~~-L~~L~l~~c~~l~~~~~~~~~~~~----~~L~~ 504 (611)
...+.+. ..++++|++.+| .++...... +...+. +.++++.. +.+.+.++..+...+ ..++.
T Consensus 189 ~~~l~~~l~~~~~~~~~le~L~L~~~-~~t~~~c~~l~~~l~~~~~~~~el~l~~-n~l~d~g~~~L~~~l~~~~~~l~~ 266 (478)
T KOG4308|consen 189 LLVLSQALESAASPLSSLETLKLSRC-GVTSSSCALLDEVLASGESLLRELDLAS-NKLGDVGVEKLLPCLSVLSETLRV 266 (478)
T ss_pred hHHHhhhhhhhhcccccHHHHhhhhc-CcChHHHHHHHHHHhccchhhHHHHHHh-cCcchHHHHHHHHHhcccchhhhh
Confidence 4443322 346788888886 355444433 334455 66677776 567776666655544 34588
Q ss_pred eeccccCCCCHHHHHHHHh---hCCCCCEEEeccCCCChhHHHH---HhccccccccceeecccCC
Q 007252 505 LDLKHCAKIDDSGFWALAY---YSQNLRQINLSYCALSDMALCM---VMGNMTRLQDAKLVHLTNC 564 (611)
Q Consensus 505 L~l~~c~~l~~~~~~~~~~---~~~~L~~L~l~~~~l~~~~~~~---~l~~~~~L~~l~l~~~~~~ 564 (611)
++++.| .+++.+...+.+ .+++++++.+.+|++++.+... .+.....+.++.+.++...
T Consensus 267 l~l~~n-si~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~~~~~ 331 (478)
T KOG4308|consen 267 LDLSRN-SITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGGTGKG 331 (478)
T ss_pred hhhhcC-CccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhccccCcc
Confidence 888888 776666544443 3567888888888877776632 2223344555555544443
No 53
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.15 E-value=0.0002 Score=49.25 Aligned_cols=58 Identities=24% Similarity=0.241 Sum_probs=25.8
Q ss_pred CCcEEecCCCCCCChhhhhhhccCCCceEEEecCCCCCChHhHHHHHhcCCCCcEEeccCC
Q 007252 373 RLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKC 433 (611)
Q Consensus 373 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 433 (611)
+|++|++++ +.++......+..+++|++|+++++ .++......+. .+++|++|++++|
T Consensus 2 ~L~~L~l~~-n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~-~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSN-NKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFS-NLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETS-STESEECTTTTTTGTTESEEEETSS-SESEEETTTTT-TSTTESEEEETSS
T ss_pred cCcEEECCC-CCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHc-CCCCCCEEeCcCC
Confidence 445555555 3444444444445555555555543 33322222211 3455555555443
No 54
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.04 E-value=0.00014 Score=64.29 Aligned_cols=82 Identities=21% Similarity=0.263 Sum_probs=37.2
Q ss_pred CCcEEeccCCCCCCHHHHHHHHhcCccCceecccccCCCChHHHHHhhCCCCCCEEecCCCccccHHHHHHHHhcCCccC
Q 007252 424 RIQGLDLYKCSGIGDDGLAALSNGCKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLA 503 (611)
Q Consensus 424 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~ 503 (611)
+.++|+.+|| .++|.++. +.+|.|+.|.|+- +.|+ .+..+..|++|++|+|.. +.+.+..--....++|+|+
T Consensus 20 ~vkKLNcwg~-~L~DIsic---~kMp~lEVLsLSv-NkIs--sL~pl~rCtrLkElYLRk-N~I~sldEL~YLknlpsLr 91 (388)
T KOG2123|consen 20 NVKKLNCWGC-GLDDISIC---EKMPLLEVLSLSV-NKIS--SLAPLQRCTRLKELYLRK-NCIESLDELEYLKNLPSLR 91 (388)
T ss_pred HhhhhcccCC-CccHHHHH---HhcccceeEEeec-cccc--cchhHHHHHHHHHHHHHh-cccccHHHHHHHhcCchhh
Confidence 4445555554 34443322 3345555555544 3333 223344455555555554 3343332222333455555
Q ss_pred EeeccccCCC
Q 007252 504 DLDLKHCAKI 513 (611)
Q Consensus 504 ~L~l~~c~~l 513 (611)
.|.|..|+-.
T Consensus 92 ~LWL~ENPCc 101 (388)
T KOG2123|consen 92 TLWLDENPCC 101 (388)
T ss_pred hHhhccCCcc
Confidence 5555555433
No 55
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.98 E-value=0.00023 Score=62.89 Aligned_cols=116 Identities=26% Similarity=0.245 Sum_probs=66.5
Q ss_pred ccCceecccccCCCChHHHHHhhCCCCCCEEecCCCccccHHHHHHHHhcCCccCEeeccccCCCCHHHHHHHHhhCCCC
Q 007252 449 KKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQNL 528 (611)
Q Consensus 449 ~~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L 528 (611)
.+.+.|+..+| .+++..+ ..++|.|+.|.|+- ++++... . +..|++|++|.+..| .|.+..-......+|+|
T Consensus 19 ~~vkKLNcwg~-~L~DIsi--c~kMp~lEVLsLSv-NkIssL~--p-l~rCtrLkElYLRkN-~I~sldEL~YLknlpsL 90 (388)
T KOG2123|consen 19 ENVKKLNCWGC-GLDDISI--CEKMPLLEVLSLSV-NKISSLA--P-LQRCTRLKELYLRKN-CIESLDELEYLKNLPSL 90 (388)
T ss_pred HHhhhhcccCC-CccHHHH--HHhcccceeEEeec-cccccch--h-HHHHHHHHHHHHHhc-ccccHHHHHHHhcCchh
Confidence 46666777765 4554432 34677777777775 4554322 2 234777777777777 66555444444556777
Q ss_pred CEEEeccCCCChhHHH----HHhccccccccceeecccCCCHHHHHHHHhh
Q 007252 529 RQINLSYCALSDMALC----MVMGNMTRLQDAKLVHLTNCTREGFELALRS 575 (611)
Q Consensus 529 ~~L~l~~~~l~~~~~~----~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~ 575 (611)
+.|+|..|+....+.. ..+..+|+|+.|+ .-.+|.+.+++.+..
T Consensus 91 r~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD---nv~VteeEle~ALr~ 138 (388)
T KOG2123|consen 91 RTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD---NVPVTEEELEEALRD 138 (388)
T ss_pred hhHhhccCCcccccchhHHHHHHHHcccchhcc---CccccHHHHHHHHhc
Confidence 7777777773222221 2334566666664 334566666665533
No 56
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=96.66 E-value=3.7e-05 Score=62.50 Aligned_cols=107 Identities=20% Similarity=0.132 Sum_probs=49.0
Q ss_pred CCcCcEEeccCcccChHHHHHhhhcCCCcEEEecCCCCCChhHHHHHHhcCCCccEEEeccccccChHHHHHHHhcCCCC
Q 007252 198 CLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGL 277 (611)
Q Consensus 198 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L 277 (611)
+.+|+.|++.++.+.. ....++++|+|+.|++.-+. +. ..+..++. +|.|+.|++.+. ++....++.-+-.+..|
T Consensus 55 l~nlevln~~nnqie~-lp~~issl~klr~lnvgmnr-l~-~lprgfgs-~p~levldltyn-nl~e~~lpgnff~m~tl 129 (264)
T KOG0617|consen 55 LKNLEVLNLSNNQIEE-LPTSISSLPKLRILNVGMNR-LN-ILPRGFGS-FPALEVLDLTYN-NLNENSLPGNFFYMTTL 129 (264)
T ss_pred hhhhhhhhcccchhhh-cChhhhhchhhhheecchhh-hh-cCccccCC-Cchhhhhhcccc-ccccccCCcchhHHHHH
Confidence 3445555555554322 23345555666666554211 10 00111222 555666666552 23333333333334555
Q ss_pred ceeccCCCCCccchhHHHHhhcCCCccEEEccCcc
Q 007252 278 LQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGAR 312 (611)
Q Consensus 278 ~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 312 (611)
+.|.+.+++ .......+.++.+|+.|.+..+.
T Consensus 130 ralyl~dnd---fe~lp~dvg~lt~lqil~lrdnd 161 (264)
T KOG0617|consen 130 RALYLGDND---FEILPPDVGKLTNLQILSLRDND 161 (264)
T ss_pred HHHHhcCCC---cccCChhhhhhcceeEEeeccCc
Confidence 556655552 23334455566666666666554
No 57
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.62 E-value=0.00043 Score=60.98 Aligned_cols=89 Identities=27% Similarity=0.302 Sum_probs=44.2
Q ss_pred hhCCCCCCEEecCCCccccHHHHHHHHhcCCccCEeeccccCCCCHHH-HHHHHhhCCCCCEEEeccCC---CChhHHHH
Q 007252 470 IRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSG-FWALAYYSQNLRQINLSYCA---LSDMALCM 545 (611)
Q Consensus 470 l~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~-~~~~~~~~~~L~~L~l~~~~---l~~~~~~~ 545 (611)
+..+|+|+.|.++....-...++..++..+|+|+.+++++| ++.+.. +..+ ..+++|..|++.+|. +.+..- .
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~pl-~~l~nL~~Ldl~n~~~~~l~dyre-~ 137 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRPL-KELENLKSLDLFNCSVTNLDDYRE-K 137 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccchh-hhhcchhhhhcccCCccccccHHH-H
Confidence 33456666666665311122334445555666666666666 554322 2222 223566666666665 333333 3
Q ss_pred Hhccccccccceeecc
Q 007252 546 VMGNMTRLQDAKLVHL 561 (611)
Q Consensus 546 ~l~~~~~L~~l~l~~~ 561 (611)
.+.-+++|+.++-.++
T Consensus 138 vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 138 VFLLLPSLKYLDGCDV 153 (260)
T ss_pred HHHHhhhhcccccccc
Confidence 4445555555554443
No 58
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.54 E-value=0.0024 Score=40.01 Aligned_cols=39 Identities=36% Similarity=0.399 Sum_probs=21.9
Q ss_pred CccCEeeccccCCCCHHHHHHHHhhCCCCCEEEeccCCCChh
Q 007252 500 KRLADLDLKHCAKIDDSGFWALAYYSQNLRQINLSYCALSDM 541 (611)
Q Consensus 500 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~ 541 (611)
++|++|++++| ++++. ......+++|+.|++++|++++.
T Consensus 1 ~~L~~L~l~~N-~i~~l--~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDL--PPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp TT-SEEEETSS-S-SSH--GGHGTTCTTSSEEEETSSCCSBE
T ss_pred CcceEEEccCC-CCccc--CchHhCCCCCCEEEecCCCCCCC
Confidence 35667777776 66543 22234457777777777766643
No 59
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=96.47 E-value=0.0038 Score=33.89 Aligned_cols=24 Identities=50% Similarity=0.905 Sum_probs=12.7
Q ss_pred CCccCEeeccccCCCCHHHHHHHH
Q 007252 499 CKRLADLDLKHCAKIDDSGFWALA 522 (611)
Q Consensus 499 ~~~L~~L~l~~c~~l~~~~~~~~~ 522 (611)
|++|+.|++++|+.++|.++..++
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 345555555555555555555443
No 60
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=96.45 E-value=0.0016 Score=62.01 Aligned_cols=40 Identities=20% Similarity=0.385 Sum_probs=36.5
Q ss_pred CcccCCcHHHHHHHHhhhCCCCCchhhHhhchhHHhhhcc
Q 007252 5 SALDVLTEDLLVRVREKIGDELDSKTWRLVCKEFSRVDSV 44 (611)
Q Consensus 5 ~~~~~LP~e~l~~If~~L~~~~~~~~~~~vc~~w~~~~~~ 44 (611)
.+|.+||+|++..|..+|+...|+++++.|||.||.++..
T Consensus 2 ~~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 2 ADWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred CChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence 4689999999999999998789999999999999997664
No 61
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=96.41 E-value=0.0049 Score=33.45 Aligned_cols=22 Identities=45% Similarity=0.783 Sum_probs=9.9
Q ss_pred CCCcEEeccCCCCCCHHHHHHH
Q 007252 423 LRIQGLDLYKCSGIGDDGLAAL 444 (611)
Q Consensus 423 ~~L~~L~l~~~~~~~~~~~~~~ 444 (611)
++|++|++++|..++|.++..+
T Consensus 2 ~~L~~L~l~~C~~itD~gl~~l 23 (26)
T smart00367 2 PNLRELDLSGCTNITDEGLQAL 23 (26)
T ss_pred CCCCEeCCCCCCCcCHHHHHHH
Confidence 3444444444444444444433
No 62
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.40 E-value=0.0099 Score=57.44 Aligned_cols=12 Identities=17% Similarity=0.160 Sum_probs=6.7
Q ss_pred CCCCceeccCCC
Q 007252 274 HSGLLQLDAGHC 285 (611)
Q Consensus 274 ~~~L~~L~l~~~ 285 (611)
+.+++.|++++|
T Consensus 51 ~~~l~~L~Is~c 62 (426)
T PRK15386 51 ARASGRLYIKDC 62 (426)
T ss_pred hcCCCEEEeCCC
Confidence 455555555555
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.21 E-value=0.0016 Score=57.58 Aligned_cols=90 Identities=20% Similarity=0.106 Sum_probs=51.1
Q ss_pred CCCCCCCcEEecCCCccCChhHHHHHHhccCCCcEEecCCCCCCCh-hhhhhhccCCCceEEEecCCCCCC-hHhHHHHH
Q 007252 342 TDSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVND-KGLEYLSRCSELLFLKLGLCENIS-DKGLFYIA 419 (611)
Q Consensus 342 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~l~ 419 (611)
+..+|+|++|.++.+......++..++..+|+|+++++++ +.+.+ ..+..+..+++|..|.+..|.... +..-..+.
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~-Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf 139 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSG-NKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVF 139 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecC-CccccccccchhhhhcchhhhhcccCCccccccHHHHHH
Confidence 5556677777777654344455666666778888888887 66654 223444456667777776663221 11112223
Q ss_pred hcCCCCcEEeccC
Q 007252 420 SNCLRIQGLDLYK 432 (611)
Q Consensus 420 ~~~~~L~~L~l~~ 432 (611)
.-+++|++|+-..
T Consensus 140 ~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 140 LLLPSLKYLDGCD 152 (260)
T ss_pred HHhhhhccccccc
Confidence 3456666665544
No 64
>PLN03150 hypothetical protein; Provisional
Probab=96.21 E-value=0.0057 Score=64.44 Aligned_cols=60 Identities=18% Similarity=0.117 Sum_probs=26.5
Q ss_pred CccCceecccccCCCChHHHHHhhCCCCCCEEecCCCccccHHHHHHHHhcCCccCEeecccc
Q 007252 448 CKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHC 510 (611)
Q Consensus 448 ~~~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c 510 (611)
+++|+.|+|+++ .+.......+..+++|+.|+++++ .++...... ...+++|+.|++++|
T Consensus 441 L~~L~~L~Ls~N-~l~g~iP~~~~~l~~L~~LdLs~N-~lsg~iP~~-l~~L~~L~~L~Ls~N 500 (623)
T PLN03150 441 LRHLQSINLSGN-SIRGNIPPSLGSITSLEVLDLSYN-SFNGSIPES-LGQLTSLRILNLNGN 500 (623)
T ss_pred CCCCCEEECCCC-cccCcCChHHhCCCCCCEEECCCC-CCCCCCchH-HhcCCCCCEEECcCC
Confidence 455555555552 333333333445555555555552 333211111 223555555555555
No 65
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.13 E-value=0.0025 Score=63.91 Aligned_cols=191 Identities=27% Similarity=0.349 Sum_probs=128.1
Q ss_pred CcEEecCCCCCCChhhhhhh----ccCCCceEEEecCCCCCChHhHHHHHhcCC----CCcEEeccCCCCCCHHHHHHHH
Q 007252 374 LEEIDLTDCNGVNDKGLEYL----SRCSELLFLKLGLCENISDKGLFYIASNCL----RIQGLDLYKCSGIGDDGLAALS 445 (611)
Q Consensus 374 L~~L~l~~~~~~~~~~~~~l----~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~----~L~~L~l~~~~~~~~~~~~~~~ 445 (611)
+..+.+.+ +.+.+.+...+ ...+.|..|+++++ .+.+.+...+...++ .+++|++..| .+++.+...+.
T Consensus 89 l~~L~L~~-~~l~~~~~~~l~~~l~t~~~L~~L~l~~n-~l~~~g~~~l~~~l~~~~~~l~~L~l~~c-~l~~~g~~~l~ 165 (478)
T KOG4308|consen 89 LLHLSLAN-NRLGDRGAEELAQALKTLPTLGQLDLSGN-NLGDEGARLLCEGLRLPQCLLQTLELVSC-SLTSEGAAPLA 165 (478)
T ss_pred HHHhhhhh-CccccchHHHHHHHhcccccHhHhhcccC-CCccHhHHHHHhhcccchHHHHHHHhhcc-cccccchHHHH
Confidence 66677777 46666565444 45789999999997 777888888765543 4677888887 56666655544
Q ss_pred hc---CccCceecccccCCCChHHHHH----hh----CCCCCCEEecCCCccccHHHHHHH---HhcCCc-cCEeecccc
Q 007252 446 NG---CKKLKKLNLSYCVNVTDRGMEH----IR----FIEDLSDLELRGLTKITSAGLTAL---AAGCKR-LADLDLKHC 510 (611)
Q Consensus 446 ~~---~~~L~~L~l~~c~~l~~~~~~~----l~----~~~~L~~L~l~~c~~l~~~~~~~~---~~~~~~-L~~L~l~~c 510 (611)
+. .+.++.++++.+. +...+... +. ...++++|++.+| .++......+ ....++ ++++++..|
T Consensus 166 ~~L~~~~~l~~l~l~~n~-l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~-~~t~~~c~~l~~~l~~~~~~~~el~l~~n 243 (478)
T KOG4308|consen 166 AVLEKNEHLTELDLSLNG-LIELGLLVLSQALESAASPLSSLETLKLSRC-GVTSSSCALLDEVLASGESLLRELDLASN 243 (478)
T ss_pred HHHhcccchhHHHHHhcc-cchhhhHHHhhhhhhhhcccccHHHHhhhhc-CcChHHHHHHHHHHhccchhhHHHHHHhc
Confidence 33 5788888888854 33333322 22 3568999999996 4554443333 233445 777999999
Q ss_pred CCCCHHHHHHHHhhCC----CCCEEEeccCCCChhHHH---HHhccccccccceeecccCCCHHHHHH
Q 007252 511 AKIDDSGFWALAYYSQ----NLRQINLSYCALSDMALC---MVMGNMTRLQDAKLVHLTNCTREGFEL 571 (611)
Q Consensus 511 ~~l~~~~~~~~~~~~~----~L~~L~l~~~~l~~~~~~---~~l~~~~~L~~l~l~~~~~~~~~~~~~ 571 (611)
++.+.++..+...++ .++.++++.|.+++.+.. ..+..+++++.+.+... .++..+...
T Consensus 244 -~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n-~l~~~~~~~ 309 (478)
T KOG4308|consen 244 -KLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNN-PLTDYGVEL 309 (478)
T ss_pred -CcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccC-ccccHHHHH
Confidence 898888877776644 559999999998877663 44456677777777544 445444443
No 66
>PLN03150 hypothetical protein; Provisional
Probab=96.05 E-value=0.0092 Score=62.90 Aligned_cols=84 Identities=23% Similarity=0.155 Sum_probs=42.2
Q ss_pred CceecccccCCCChHHHHHhhCCCCCCEEecCCCccccHHHHHHHHhcCCccCEeeccccCCCCHHHHHHHHhhCCCCCE
Q 007252 451 LKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQNLRQ 530 (611)
Q Consensus 451 L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~ 530 (611)
++.|+|++ +.+.......+..+++|+.|+++++ .+.... ......+++|+.|++++| .+.......+ ..+++|+.
T Consensus 420 v~~L~L~~-n~L~g~ip~~i~~L~~L~~L~Ls~N-~l~g~i-P~~~~~l~~L~~LdLs~N-~lsg~iP~~l-~~L~~L~~ 494 (623)
T PLN03150 420 IDGLGLDN-QGLRGFIPNDISKLRHLQSINLSGN-SIRGNI-PPSLGSITSLEVLDLSYN-SFNGSIPESL-GQLTSLRI 494 (623)
T ss_pred EEEEECCC-CCccccCCHHHhCCCCCCEEECCCC-cccCcC-ChHHhCCCCCCEEECCCC-CCCCCCchHH-hcCCCCCE
Confidence 55566655 2344333344556666666666663 333211 111234666666666666 4432222222 23466666
Q ss_pred EEeccCCCC
Q 007252 531 INLSYCALS 539 (611)
Q Consensus 531 L~l~~~~l~ 539 (611)
|++++|.++
T Consensus 495 L~Ls~N~l~ 503 (623)
T PLN03150 495 LNLNGNSLS 503 (623)
T ss_pred EECcCCccc
Confidence 666666654
No 67
>PRK15386 type III secretion protein GogB; Provisional
Probab=95.89 E-value=0.0098 Score=57.48 Aligned_cols=137 Identities=18% Similarity=0.265 Sum_probs=78.6
Q ss_pred ccCCCcEEecCCCCCCChhhhhhhccCC-CceEEEecCCCCCChHhHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhcC
Q 007252 370 FCLRLEEIDLTDCNGVNDKGLEYLSRCS-ELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGC 448 (611)
Q Consensus 370 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 448 (611)
.+++++.|++++| .+.. +..+| +|++|.+++|..++... .. -.++|++|++++|..+.. + .
T Consensus 50 ~~~~l~~L~Is~c-~L~s-----LP~LP~sLtsL~Lsnc~nLtsLP-~~---LP~nLe~L~Ls~Cs~L~s-----L---P 111 (426)
T PRK15386 50 EARASGRLYIKDC-DIES-----LPVLPNELTEITIENCNNLTTLP-GS---IPEGLEKLTVCHCPEISG-----L---P 111 (426)
T ss_pred HhcCCCEEEeCCC-CCcc-----cCCCCCCCcEEEccCCCCcccCC-ch---hhhhhhheEccCcccccc-----c---c
Confidence 5789999999986 4433 22343 69999999886653221 11 136899999998865531 1 2
Q ss_pred ccCceecccccCCCChHHHHHhhCC-CCCCEEecCCCccccHHHHHHHHhcCCccCEeeccccCCCCHHHHHHHHhhCCC
Q 007252 449 KKLKKLNLSYCVNVTDRGMEHIRFI-EDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQN 527 (611)
Q Consensus 449 ~~L~~L~l~~c~~l~~~~~~~l~~~-~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 527 (611)
++|+.|++.. .... .+..+ ++|+.|.+.++........... -.++|+.|++++|..+... .....+
T Consensus 112 ~sLe~L~L~~-n~~~-----~L~~LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i~LP-----~~LP~S 178 (426)
T PRK15386 112 ESVRSLEIKG-SATD-----SIKNVPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNIILP-----EKLPES 178 (426)
T ss_pred cccceEEeCC-CCCc-----ccccCcchHhheeccccccccccccccc--cCCcccEEEecCCCcccCc-----cccccc
Confidence 5788888754 3222 13334 3677777754321111111100 1257888888888543210 112357
Q ss_pred CCEEEeccCC
Q 007252 528 LRQINLSYCA 537 (611)
Q Consensus 528 L~~L~l~~~~ 537 (611)
|+.|.++.+.
T Consensus 179 Lk~L~ls~n~ 188 (426)
T PRK15386 179 LQSITLHIEQ 188 (426)
T ss_pred CcEEEecccc
Confidence 8888887663
No 68
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=95.83 E-value=0.0085 Score=37.50 Aligned_cols=35 Identities=23% Similarity=0.419 Sum_probs=28.4
Q ss_pred CCCCEEEeccCCCChhHHHHHhccccccccceeeccc
Q 007252 526 QNLRQINLSYCALSDMALCMVMGNMTRLQDAKLVHLT 562 (611)
Q Consensus 526 ~~L~~L~l~~~~l~~~~~~~~l~~~~~L~~l~l~~~~ 562 (611)
++|++|++++|.|++.+. .++++++|+.|++.+++
T Consensus 1 ~~L~~L~l~~N~i~~l~~--~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPP--ELSNLPNLETLNLSNNP 35 (44)
T ss_dssp TT-SEEEETSSS-SSHGG--HGTTCTTSSEEEETSSC
T ss_pred CcceEEEccCCCCcccCc--hHhCCCCCCEEEecCCC
Confidence 579999999999998754 48899999999998883
No 69
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=95.04 E-value=0.011 Score=46.83 Aligned_cols=89 Identities=20% Similarity=0.208 Sum_probs=51.5
Q ss_pred cCceecccccCCC-ChHHHHHhhCCCCCCEEecCCCccccHHHHHHHHhcCCccCEeeccccCCCCHHHHHHHHhhCCCC
Q 007252 450 KLKKLNLSYCVNV-TDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQNL 528 (611)
Q Consensus 450 ~L~~L~l~~c~~l-~~~~~~~l~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L 528 (611)
.+..++|+.|.-. -...+..+.+...|+.+++++ +.+.+. ...+...+|..+.|++++| .+.+...+ ++. +|.|
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~-N~fk~f-p~kft~kf~t~t~lNl~~n-eisdvPeE-~Aa-m~aL 102 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSD-NGFKKF-PKKFTIKFPTATTLNLANN-EISDVPEE-LAA-MPAL 102 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEeccc-chhhhC-CHHHhhccchhhhhhcchh-hhhhchHH-Hhh-hHHh
Confidence 3445566666422 133444555666777777776 444332 2233445667777777777 66665554 333 4777
Q ss_pred CEEEeccCCCChhHH
Q 007252 529 RQINLSYCALSDMAL 543 (611)
Q Consensus 529 ~~L~l~~~~l~~~~~ 543 (611)
+.|++++|++..+.-
T Consensus 103 r~lNl~~N~l~~~p~ 117 (177)
T KOG4579|consen 103 RSLNLRFNPLNAEPR 117 (177)
T ss_pred hhcccccCccccchH
Confidence 777777777665543
No 70
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=94.99 E-value=0.032 Score=47.41 Aligned_cols=87 Identities=17% Similarity=0.135 Sum_probs=46.6
Q ss_pred hhCCCCCCEEecCCCccccHHHHHHHHhcCCccCEeeccccCCCCHHHHHHHHhhCCCCCEEEeccCCCChhHHH--HHh
Q 007252 470 IRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQNLRQINLSYCALSDMALC--MVM 547 (611)
Q Consensus 470 l~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~--~~l 547 (611)
+..++.|.+|.+.+ ++++..... +..-+|+|+.|.+.+| .+...+--.-...||.|++|.+-+|+++...-- ..+
T Consensus 60 lp~l~rL~tLll~n-NrIt~I~p~-L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl 136 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNN-NRITRIDPD-LDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVL 136 (233)
T ss_pred CCCccccceEEecC-Ccceeeccc-hhhhccccceEEecCc-chhhhhhcchhccCCccceeeecCCchhcccCceeEEE
Confidence 44566677777766 556543321 2223667777777777 554433222223357777777777776544320 112
Q ss_pred ccccccccceee
Q 007252 548 GNMTRLQDAKLV 559 (611)
Q Consensus 548 ~~~~~L~~l~l~ 559 (611)
-.+|+|+.|++.
T Consensus 137 ~klp~l~~LDF~ 148 (233)
T KOG1644|consen 137 YKLPSLRTLDFQ 148 (233)
T ss_pred EecCcceEeehh
Confidence 235555555443
No 71
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=94.72 E-value=0.0088 Score=50.69 Aligned_cols=106 Identities=12% Similarity=0.175 Sum_probs=70.5
Q ss_pred CCCCEEecCCCccccHHHHHHHHhcCCccCEeeccccCCCCHHHHHHHHhhCCCCCEEEeccCCCChhHHHHHhcccccc
Q 007252 474 EDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQNLRQINLSYCALSDMALCMVMGNMTRL 553 (611)
Q Consensus 474 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~l~~~~~L 553 (611)
.....+++.+ +.+... ..+..+++|.+|.+.+| .++... ..+...+|+|+.|.+.+|.|...+-..-+..||+|
T Consensus 42 d~~d~iDLtd-Ndl~~l---~~lp~l~rL~tLll~nN-rIt~I~-p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L 115 (233)
T KOG1644|consen 42 DQFDAIDLTD-NDLRKL---DNLPHLPRLHTLLLNNN-RITRID-PDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKL 115 (233)
T ss_pred cccceecccc-cchhhc---ccCCCccccceEEecCC-cceeec-cchhhhccccceEEecCcchhhhhhcchhccCCcc
Confidence 3455666666 333211 12335789999999999 777644 23455579999999999996655544667899999
Q ss_pred ccceeecccCCCHHHHHHHHhhcCCCccchhh
Q 007252 554 QDAKLVHLTNCTREGFELALRSCCMRIKKVKL 585 (611)
Q Consensus 554 ~~l~l~~~~~~~~~~~~~~~~~~c~~l~~l~l 585 (611)
+.|.+.+.+-..........+...|+|+.|+-
T Consensus 116 ~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF 147 (233)
T KOG1644|consen 116 EYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDF 147 (233)
T ss_pred ceeeecCCchhcccCceeEEEEecCcceEeeh
Confidence 99999887544444444444455666776664
No 72
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=94.62 E-value=0.017 Score=52.27 Aligned_cols=40 Identities=23% Similarity=0.415 Sum_probs=32.9
Q ss_pred cccCCcHHHHHHHHhhhC----CCCCchhhHhhchhHHhhhccc
Q 007252 6 ALDVLTEDLLVRVREKIG----DELDSKTWRLVCKEFSRVDSVT 45 (611)
Q Consensus 6 ~~~~LP~e~l~~If~~L~----~~~~~~~~~~vc~~w~~~~~~~ 45 (611)
.|..||+|++..||..+- +.+++..+++|||.|+..++..
T Consensus 106 ~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~ 149 (366)
T KOG2997|consen 106 SISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDP 149 (366)
T ss_pred hhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcCh
Confidence 467899999999998643 2688999999999999876553
No 73
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=94.38 E-value=0.016 Score=52.81 Aligned_cols=42 Identities=24% Similarity=0.316 Sum_probs=37.6
Q ss_pred CCcccCCc----HHHHHHHHhhhCCCCCchhhHhhchhHHhhhcccc
Q 007252 4 SSALDVLT----EDLLVRVREKIGDELDSKTWRLVCKEFSRVDSVTR 46 (611)
Q Consensus 4 ~~~~~~LP----~e~l~~If~~L~~~~~~~~~~~vc~~w~~~~~~~~ 46 (611)
.|.+..|| +|+.+.||+||+ ..++.++.+||++|+++.....
T Consensus 72 rDFi~~lP~~gl~hi~e~ilsyld-~~sLc~celv~k~W~r~l~dg~ 117 (499)
T KOG0281|consen 72 RDFITALPEQGLDHIAENILSYLD-ALSLCACELVCKEWKRVLSDGM 117 (499)
T ss_pred HHHHHhcccccHHHHHHHHHHhcc-hhhhhHHHHHHHHHHHHhccch
Confidence 45677899 999999999999 9999999999999999887753
No 74
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=93.92 E-value=0.038 Score=55.20 Aligned_cols=39 Identities=31% Similarity=0.309 Sum_probs=21.2
Q ss_pred hcCCccCEeeccccCCCCHHHHHHHHhhCCCCCEEEeccCCCC
Q 007252 497 AGCKRLADLDLKHCAKIDDSGFWALAYYSQNLRQINLSYCALS 539 (611)
Q Consensus 497 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~~~l~ 539 (611)
..+++++.|++++| .+++... .....+++.|+++++.+.
T Consensus 252 ~~l~~l~~L~~s~n-~i~~i~~---~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 252 GNLSNLETLDLSNN-QISSISS---LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred ccccccceeccccc-ccccccc---ccccCccCEEeccCcccc
Confidence 34556666666666 5544322 222356666666666543
No 75
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=93.92 E-value=0.035 Score=29.35 Aligned_cols=18 Identities=28% Similarity=0.411 Sum_probs=8.2
Q ss_pred CCCCEEEeccCCCChhHH
Q 007252 526 QNLRQINLSYCALSDMAL 543 (611)
Q Consensus 526 ~~L~~L~l~~~~l~~~~~ 543 (611)
++|+.|+|++|.|++.+.
T Consensus 2 ~~L~~L~l~~n~i~~~g~ 19 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGA 19 (24)
T ss_dssp TT-SEEE-TSSBEHHHHH
T ss_pred CCCCEEEccCCcCCHHHH
Confidence 445555555555555544
No 76
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=93.66 E-value=0.061 Score=28.39 Aligned_cols=23 Identities=43% Similarity=0.498 Sum_probs=12.5
Q ss_pred CCccCEeeccccCCCCHHHHHHHH
Q 007252 499 CKRLADLDLKHCAKIDDSGFWALA 522 (611)
Q Consensus 499 ~~~L~~L~l~~c~~l~~~~~~~~~ 522 (611)
+++|+.|+|++| .+++.++.+++
T Consensus 1 ~~~L~~L~l~~n-~i~~~g~~~l~ 23 (24)
T PF13516_consen 1 NPNLETLDLSNN-QITDEGASALA 23 (24)
T ss_dssp -TT-SEEE-TSS-BEHHHHHHHHH
T ss_pred CCCCCEEEccCC-cCCHHHHHHhC
Confidence 356666677666 56666665553
No 77
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=93.40 E-value=0.02 Score=57.37 Aligned_cols=109 Identities=25% Similarity=0.281 Sum_probs=55.8
Q ss_pred CccCceecccccCCCChHHHHH-hhCCCCCCEEecCCCccccHHHHHHHHhcCCccCEeeccccCCCCHHHHHHHHhhCC
Q 007252 448 CKKLKKLNLSYCVNVTDRGMEH-IRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQ 526 (611)
Q Consensus 448 ~~~L~~L~l~~c~~l~~~~~~~-l~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~ 526 (611)
+.+|+.|++.+ +.+.. +.. +..+++|+.|++++ +.+++... + ..++.|+.|++++| .+.+.. .+ ..++
T Consensus 94 ~~~l~~l~l~~-n~i~~--i~~~l~~~~~L~~L~ls~-N~I~~i~~--l-~~l~~L~~L~l~~N-~i~~~~--~~-~~l~ 162 (414)
T KOG0531|consen 94 LKSLEALDLYD-NKIEK--IENLLSSLVNLQVLDLSF-NKITKLEG--L-STLTLLKELNLSGN-LISDIS--GL-ESLK 162 (414)
T ss_pred ccceeeeeccc-cchhh--cccchhhhhcchheeccc-cccccccc--h-hhccchhhheeccC-cchhcc--CC-ccch
Confidence 45666666655 33332 222 44566777777766 45543221 1 22445777777776 443321 11 1146
Q ss_pred CCCEEEeccCCCChhHHHHHhccccccccceeecccCCCHHH
Q 007252 527 NLRQINLSYCALSDMALCMVMGNMTRLQDAKLVHLTNCTREG 568 (611)
Q Consensus 527 ~L~~L~l~~~~l~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~ 568 (611)
.|+.+++++|.+.+..... +..+.+++.+.+.+......++
T Consensus 163 ~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~ 203 (414)
T KOG0531|consen 163 SLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEG 203 (414)
T ss_pred hhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccc
Confidence 6677777777655543300 3456666666665554433333
No 78
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=93.05 E-value=0.17 Score=50.56 Aligned_cols=13 Identities=31% Similarity=0.447 Sum_probs=6.6
Q ss_pred CcCcEEeccCccc
Q 007252 199 LDLKSLDVSYLKL 211 (611)
Q Consensus 199 ~~L~~L~l~~~~~ 211 (611)
+.++.|++.++.+
T Consensus 116 ~~l~~L~l~~n~i 128 (394)
T COG4886 116 TNLTSLDLDNNNI 128 (394)
T ss_pred cceeEEecCCccc
Confidence 4455555555543
No 79
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=91.55 E-value=0.081 Score=42.03 Aligned_cols=84 Identities=15% Similarity=0.127 Sum_probs=60.5
Q ss_pred CCCEEecCCCccccHHHHHHHHhcCCccCEeeccccCCCCHHHHHHHHhhCCCCCEEEeccCCCChhHHHHHhccccccc
Q 007252 475 DLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQNLRQINLSYCALSDMALCMVMGNMTRLQ 554 (611)
Q Consensus 475 ~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~l~~~~~L~ 554 (611)
.+..++++.|.-.-.............|..+++++| .+.+.. ..+...+|.+..|++++|.+++.+. + ++.++.|+
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N-~fk~fp-~kft~kf~t~t~lNl~~neisdvPe-E-~Aam~aLr 103 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDN-GFKKFP-KKFTIKFPTATTLNLANNEISDVPE-E-LAAMPALR 103 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccc-hhhhCC-HHHhhccchhhhhhcchhhhhhchH-H-HhhhHHhh
Confidence 456677888754322223333344677888899999 665543 3455556899999999999999887 4 89999999
Q ss_pred cceeeccc
Q 007252 555 DAKLVHLT 562 (611)
Q Consensus 555 ~l~l~~~~ 562 (611)
.|++...+
T Consensus 104 ~lNl~~N~ 111 (177)
T KOG4579|consen 104 SLNLRFNP 111 (177)
T ss_pred hcccccCc
Confidence 99987765
No 80
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=91.39 E-value=0.35 Score=26.65 Aligned_cols=21 Identities=48% Similarity=0.645 Sum_probs=9.5
Q ss_pred ccCEeeccccCCCCHHHHHHHH
Q 007252 501 RLADLDLKHCAKIDDSGFWALA 522 (611)
Q Consensus 501 ~L~~L~l~~c~~l~~~~~~~~~ 522 (611)
+|++|++++| .+++.+...++
T Consensus 3 ~L~~LdL~~N-~i~~~G~~~L~ 23 (28)
T smart00368 3 SLRELDLSNN-KLGDEGARALA 23 (28)
T ss_pred ccCEEECCCC-CCCHHHHHHHH
Confidence 3444444444 44444444443
No 81
>PF13013 F-box-like_2: F-box-like domain
Probab=90.08 E-value=0.23 Score=38.14 Aligned_cols=30 Identities=17% Similarity=0.096 Sum_probs=27.0
Q ss_pred cccCCcHHHHHHHHhhhCCCCCchhhHhhch
Q 007252 6 ALDVLTEDLLVRVREKIGDELDSKTWRLVCK 36 (611)
Q Consensus 6 ~~~~LP~e~l~~If~~L~~~~~~~~~~~vc~ 36 (611)
.+.+||+|++..||++.. ..+...+...|+
T Consensus 21 tl~DLP~ELl~~I~~~C~-~~~l~~l~~~~~ 50 (109)
T PF13013_consen 21 TLLDLPWELLQLIFDYCN-DPILLALSRTCR 50 (109)
T ss_pred chhhChHHHHHHHHhhcC-cHHHHHHHHHHH
Confidence 467899999999999999 888888888888
No 82
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=90.07 E-value=0.2 Score=23.83 Aligned_cols=13 Identities=46% Similarity=0.652 Sum_probs=5.4
Q ss_pred CCCEEEeccCCCC
Q 007252 527 NLRQINLSYCALS 539 (611)
Q Consensus 527 ~L~~L~l~~~~l~ 539 (611)
+|+.|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4555555555543
No 83
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=89.40 E-value=0.1 Score=52.28 Aligned_cols=110 Identities=24% Similarity=0.286 Sum_probs=76.4
Q ss_pred cCCCCcEEeccCCCCCCHHHHHHHHhcCccCceecccccCCCChHHHHHhhCCCCCCEEecCCCccccHHHHHHHHhcCC
Q 007252 421 NCLRIQGLDLYKCSGIGDDGLAALSNGCKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCK 500 (611)
Q Consensus 421 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~ 500 (611)
.+.+|+.|++.+. .+. .+......+++|++|++++ +.|++ +..+..++.|+.|++.+ +.++...- ...++
T Consensus 93 ~~~~l~~l~l~~n-~i~--~i~~~l~~~~~L~~L~ls~-N~I~~--i~~l~~l~~L~~L~l~~-N~i~~~~~---~~~l~ 162 (414)
T KOG0531|consen 93 KLKSLEALDLYDN-KIE--KIENLLSSLVNLQVLDLSF-NKITK--LEGLSTLTLLKELNLSG-NLISDISG---LESLK 162 (414)
T ss_pred cccceeeeecccc-chh--hcccchhhhhcchheeccc-ccccc--ccchhhccchhhheecc-CcchhccC---Cccch
Confidence 5788999999874 443 2333234579999999999 66764 34455677899999999 45654321 22378
Q ss_pred ccCEeeccccCCCCHHHHHHHHhhCCCCCEEEeccCCCChhH
Q 007252 501 RLADLDLKHCAKIDDSGFWALAYYSQNLRQINLSYCALSDMA 542 (611)
Q Consensus 501 ~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~ 542 (611)
+|+.+++++| .+....-.. ...+.+++.+++.+|.+....
T Consensus 163 ~L~~l~l~~n-~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~ 202 (414)
T KOG0531|consen 163 SLKLLDLSYN-RIVDIENDE-LSELISLEELDLGGNSIREIE 202 (414)
T ss_pred hhhcccCCcc-hhhhhhhhh-hhhccchHHHhccCCchhccc
Confidence 9999999999 665443311 345689999999999965543
No 84
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=88.65 E-value=0.54 Score=25.91 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=18.8
Q ss_pred CCCCEEEeccCCCChhHHHHHhc
Q 007252 526 QNLRQINLSYCALSDMALCMVMG 548 (611)
Q Consensus 526 ~~L~~L~l~~~~l~~~~~~~~l~ 548 (611)
++|++|+|++|.+++.+. .++.
T Consensus 2 ~~L~~LdL~~N~i~~~G~-~~L~ 23 (28)
T smart00368 2 PSLRELDLSNNKLGDEGA-RALA 23 (28)
T ss_pred CccCEEECCCCCCCHHHH-HHHH
Confidence 689999999999999988 5554
No 85
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=82.33 E-value=0.34 Score=24.87 Aligned_cols=15 Identities=33% Similarity=0.448 Sum_probs=9.3
Q ss_pred CCCEEEeccCCCChh
Q 007252 527 NLRQINLSYCALSDM 541 (611)
Q Consensus 527 ~L~~L~l~~~~l~~~ 541 (611)
+|++|++++|.++..
T Consensus 1 ~L~~Ldls~n~l~~i 15 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSI 15 (22)
T ss_dssp TESEEEETSSEESEE
T ss_pred CccEEECCCCcCEeC
Confidence 366677777766543
No 86
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=81.76 E-value=0.8 Score=36.99 Aligned_cols=32 Identities=22% Similarity=0.500 Sum_probs=10.8
Q ss_pred cCCCcEEecCCCCCCChhhhhhhccCCCceEEEe
Q 007252 371 CLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKL 404 (611)
Q Consensus 371 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l 404 (611)
+++|+.+.+.. .+...+-..+..++.++.+.+
T Consensus 34 ~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~ 65 (129)
T PF13306_consen 34 CTSLKSINFPN--NLTSIGDNAFSNCKSLESITF 65 (129)
T ss_dssp -TT-SEEEESS--TTSCE-TTTTTT-TT-EEEEE
T ss_pred ccccccccccc--cccccceeeeecccccccccc
Confidence 33444444443 133323333334444444444
No 87
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=81.74 E-value=0.18 Score=50.13 Aligned_cols=87 Identities=18% Similarity=0.197 Sum_probs=46.0
Q ss_pred CccCceecccccCCCChHHHHHhhCCCCCCEEecCCCccccHHHHHHHHhcCCccCEeeccccCCCCHHHHHHHHhhCCC
Q 007252 448 CKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQN 527 (611)
Q Consensus 448 ~~~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 527 (611)
.+.|.+|+.++|. +... ...++.+.+|+.|.++. +++.+.. ..+. .-.|.+||++.| ++....+.. ..+..
T Consensus 165 ~~tl~~ld~s~ne-i~sl-psql~~l~slr~l~vrR-n~l~~lp-~El~--~LpLi~lDfScN-kis~iPv~f--r~m~~ 235 (722)
T KOG0532|consen 165 LPTLAHLDVSKNE-IQSL-PSQLGYLTSLRDLNVRR-NHLEDLP-EELC--SLPLIRLDFSCN-KISYLPVDF--RKMRH 235 (722)
T ss_pred chhHHHhhhhhhh-hhhc-hHHhhhHHHHHHHHHhh-hhhhhCC-HHHh--CCceeeeecccC-ceeecchhh--hhhhh
Confidence 4666667666643 2211 22345566667776666 3332211 1121 335677777776 665543321 22467
Q ss_pred CCEEEeccCCCChhHH
Q 007252 528 LRQINLSYCALSDMAL 543 (611)
Q Consensus 528 L~~L~l~~~~l~~~~~ 543 (611)
|++|-|.+|++...+.
T Consensus 236 Lq~l~LenNPLqSPPA 251 (722)
T KOG0532|consen 236 LQVLQLENNPLQSPPA 251 (722)
T ss_pred heeeeeccCCCCCChH
Confidence 7777777777655444
No 88
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=80.72 E-value=0.52 Score=48.39 Aligned_cols=45 Identities=16% Similarity=0.257 Sum_probs=39.7
Q ss_pred CCcccCCcHHHHHHHHhhhCCCCCchhhHhhchhHHhhhccccccc
Q 007252 4 SSALDVLTEDLLVRVREKIGDELDSKTWRLVCKEFSRVDSVTRTTL 49 (611)
Q Consensus 4 ~~~~~~LP~e~l~~If~~L~~~~~~~~~~~vc~~w~~~~~~~~~~~ 49 (611)
.+.+..||.|+..+|+.+|+ .+++.+++.||+.|+.++.....++
T Consensus 105 ~dfi~~lp~el~~~il~~Ld-~~~l~~~~~v~~~w~~~~~~~~~~~ 149 (537)
T KOG0274|consen 105 RDFLSLLPSELSLHILSFLD-GRDLLAVRQVCRNWNKLLDDDKVWW 149 (537)
T ss_pred cchhhcccchhcccccccCC-HHHhhhhhhhcchhhhhhhccchhh
Confidence 56778899999999999999 8999999999999999887765544
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=78.53 E-value=4.4 Score=40.72 Aligned_cols=90 Identities=19% Similarity=0.261 Sum_probs=60.6
Q ss_pred HHHHHhcCCCccEEEeccccccChHHHHHHHhcCCCCceeccCCCCCccchhHHHHhhcC--CCccEEEccCcccCh---
Q 007252 241 LRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDL--KNLEAITMDGARISD--- 315 (611)
Q Consensus 241 ~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~--- 315 (611)
+..+..+.|.+..+.++++......++..+....|+|+.|+|+++.. .......+.+. ..|++|.+.||++..
T Consensus 210 L~~~~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~--~~~~~~el~K~k~l~Leel~l~GNPlc~tf~ 287 (585)
T KOG3763|consen 210 LKHIEENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHS--KISSESELDKLKGLPLEELVLEGNPLCTTFS 287 (585)
T ss_pred HHHhhcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchh--hhcchhhhhhhcCCCHHHeeecCCccccchh
Confidence 34455566778888887766666666777777788888888887622 11223333333 368999999997653
Q ss_pred ---HHHHHHHHhCCCCcEEe
Q 007252 316 ---SCFQTISFNCKSLVEIG 332 (611)
Q Consensus 316 ---~~l~~~~~~~~~L~~L~ 332 (611)
+.+.++.+.+|+|..|+
T Consensus 288 ~~s~yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 288 DRSEYVSAIRELFPKLLRLD 307 (585)
T ss_pred hhHHHHHHHHHhcchheeec
Confidence 45566777788888876
No 90
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=77.54 E-value=1.1 Score=36.11 Aligned_cols=34 Identities=24% Similarity=0.497 Sum_probs=15.2
Q ss_pred ccCCCcEEecCCCCCCChhhhhhhccCCCceEEEecC
Q 007252 370 FCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGL 406 (611)
Q Consensus 370 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 406 (611)
.+++|+.+.+.. .+...+...+..+ .++.+.+..
T Consensus 79 ~~~~l~~i~~~~--~~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 79 NCTNLKNIDIPS--NITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp T-TTECEEEETT--T-BEEHTTTTTT--T--EEE-TT
T ss_pred ccccccccccCc--cccEEchhhhcCC-CceEEEECC
Confidence 456666666654 2444444445555 666666653
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=72.26 E-value=7.6 Score=39.11 Aligned_cols=91 Identities=22% Similarity=0.125 Sum_probs=52.9
Q ss_pred HHHHHhcCCccceeecccccccChHHHHHHHHcCCcCcEEeccCcccChHHHHHhhh--cCCCcEEEecCCCCCCh----
Q 007252 165 LAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIAT--LAKLESLVMVGCPCVDD---- 238 (611)
Q Consensus 165 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~--~~~L~~L~l~~~~~~~~---- 238 (611)
+..+....|.+..+.++++.-..-..+..+....|+|+.|+|++|...-.....+.+ ...|++|-+.|++-.+.
T Consensus 210 L~~~~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~ 289 (585)
T KOG3763|consen 210 LKHIEENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDR 289 (585)
T ss_pred HHHhhcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhh
Confidence 344455567777777777644444556667777788888888887222222233333 45677777777552221
Q ss_pred -hHHHHHHhcCCCccEEE
Q 007252 239 -TGLRFLESGCPLLKTIF 255 (611)
Q Consensus 239 -~~~~~l~~~~~~L~~L~ 255 (611)
+.+.++.+..|+|..|+
T Consensus 290 s~yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 290 SEYVSAIRELFPKLLRLD 307 (585)
T ss_pred HHHHHHHHHhcchheeec
Confidence 23444555567666665
No 92
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=71.70 E-value=3.3 Score=22.11 Aligned_cols=18 Identities=39% Similarity=0.543 Sum_probs=12.2
Q ss_pred CCCCEEEeccCCCChhHH
Q 007252 526 QNLRQINLSYCALSDMAL 543 (611)
Q Consensus 526 ~~L~~L~l~~~~l~~~~~ 543 (611)
++|+.|++++|.+...+.
T Consensus 2 ~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00369 2 PNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCEEECCCCcCCcCCH
Confidence 567777777777665544
No 93
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=71.70 E-value=3.3 Score=22.11 Aligned_cols=18 Identities=39% Similarity=0.543 Sum_probs=12.2
Q ss_pred CCCCEEEeccCCCChhHH
Q 007252 526 QNLRQINLSYCALSDMAL 543 (611)
Q Consensus 526 ~~L~~L~l~~~~l~~~~~ 543 (611)
++|+.|++++|.+...+.
T Consensus 2 ~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00370 2 PNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCEEECCCCcCCcCCH
Confidence 567777777777665544
No 94
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=62.24 E-value=1.4 Score=44.20 Aligned_cols=102 Identities=24% Similarity=0.263 Sum_probs=68.4
Q ss_pred cCceecccccCCCChHHHHHhhCCCCCCEEecCCCccccHHHHHHHHhcCCccCEeeccccCCCCHHHHHHHHhhCCCCC
Q 007252 450 KLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQNLR 529 (611)
Q Consensus 450 ~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~ 529 (611)
-|+.|.+++ ++++... ..++..++|..|+.+.|. +. .+..-..++.+|+.|.+..| .+.+.. ..++ .-.|.
T Consensus 144 pLkvli~sN-Nkl~~lp-~~ig~~~tl~~ld~s~ne-i~--slpsql~~l~slr~l~vrRn-~l~~lp-~El~--~LpLi 214 (722)
T KOG0532|consen 144 PLKVLIVSN-NKLTSLP-EEIGLLPTLAHLDVSKNE-IQ--SLPSQLGYLTSLRDLNVRRN-HLEDLP-EELC--SLPLI 214 (722)
T ss_pred cceeEEEec-CccccCC-cccccchhHHHhhhhhhh-hh--hchHHhhhHHHHHHHHHhhh-hhhhCC-HHHh--CCcee
Confidence 477777776 4555322 334467889999998753 32 22233345788999999888 544332 2333 35789
Q ss_pred EEEeccCCCChhHHHHHhccccccccceeeccc
Q 007252 530 QINLSYCALSDMALCMVMGNMTRLQDAKLVHLT 562 (611)
Q Consensus 530 ~L~l~~~~l~~~~~~~~l~~~~~L~~l~l~~~~ 562 (611)
.|++++|+++..++ .|.++..|+.|.+-+.+
T Consensus 215 ~lDfScNkis~iPv--~fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 215 RLDFSCNKISYLPV--DFRKMRHLQVLQLENNP 245 (722)
T ss_pred eeecccCceeecch--hhhhhhhheeeeeccCC
Confidence 99999999988876 56788888888875544
No 95
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=59.97 E-value=11 Score=34.01 Aligned_cols=40 Identities=10% Similarity=0.207 Sum_probs=33.1
Q ss_pred CCcccCCcHHHHHHHHhhhCCCCCchhhHhhchhHHhhhc
Q 007252 4 SSALDVLTEDLLVRVREKIGDELDSKTWRLVCKEFSRVDS 43 (611)
Q Consensus 4 ~~~~~~LP~e~l~~If~~L~~~~~~~~~~~vc~~w~~~~~ 43 (611)
+-.+.+||.|++..|+..+++.+|+..++.|--..+.+..
T Consensus 199 ~ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~ 238 (332)
T KOG3926|consen 199 GLTLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSE 238 (332)
T ss_pred CCCcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHH
Confidence 3467899999999999999999999999998665555444
No 96
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=47.53 E-value=16 Score=19.70 Aligned_cols=7 Identities=29% Similarity=0.292 Sum_probs=2.7
Q ss_pred cEEeccC
Q 007252 426 QGLDLYK 432 (611)
Q Consensus 426 ~~L~l~~ 432 (611)
+.|++..
T Consensus 3 KtL~L~~ 9 (26)
T PF07723_consen 3 KTLHLDS 9 (26)
T ss_pred eEEEeeE
Confidence 3344433
No 97
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=47.44 E-value=17 Score=19.62 Aligned_cols=15 Identities=27% Similarity=0.459 Sum_probs=11.8
Q ss_pred CCCCEEEeccCCCCh
Q 007252 526 QNLRQINLSYCALSD 540 (611)
Q Consensus 526 ~~L~~L~l~~~~l~~ 540 (611)
.+|+.|++++|.|+.
T Consensus 2 ~~L~~L~L~~NkI~~ 16 (26)
T smart00365 2 TNLEELDLSQNKIKK 16 (26)
T ss_pred CccCEEECCCCccce
Confidence 578888888888754
No 98
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=37.62 E-value=17 Score=19.60 Aligned_cols=16 Identities=25% Similarity=0.524 Sum_probs=11.0
Q ss_pred CCCCEEEeccCCCChh
Q 007252 526 QNLRQINLSYCALSDM 541 (611)
Q Consensus 526 ~~L~~L~l~~~~l~~~ 541 (611)
++|+.|++++|.++..
T Consensus 2 ~~L~~L~vs~N~Lt~L 17 (26)
T smart00364 2 PSLKELNVSNNQLTSL 17 (26)
T ss_pred cccceeecCCCccccC
Confidence 4677788887776543
No 99
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=25.38 E-value=51 Score=31.29 Aligned_cols=41 Identities=17% Similarity=0.255 Sum_probs=33.1
Q ss_pred CcccCCcHHHHHHHHhhhCC-------CCCchhhHhhchhHHhhhccc
Q 007252 5 SALDVLTEDLLVRVREKIGD-------ELDSKTWRLVCKEFSRVDSVT 45 (611)
Q Consensus 5 ~~~~~LP~e~l~~If~~L~~-------~~~~~~~~~vc~~w~~~~~~~ 45 (611)
+.|..||.|.+..|....+. .+..++++-||+.|++.....
T Consensus 43 ~~~~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~~ 90 (355)
T KOG2502|consen 43 SLWAALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKEI 90 (355)
T ss_pred chhhcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhcccc
Confidence 46789999999999998762 345788899999999866553
No 100
>PF12586 DUF3760: Protein of unknown function (DUF3760); InterPro: IPR022235 This domain family is found in eukaryotes, and is typically between 46 and 64 amino acids in length.
Probab=24.84 E-value=65 Score=20.36 Aligned_cols=28 Identities=4% Similarity=0.089 Sum_probs=22.6
Q ss_pred HHHHHHHHhhhCCCCCchhhHhhchhHHh
Q 007252 12 EDLLVRVREKIGDELDSKTWRLVCKEFSR 40 (611)
Q Consensus 12 ~e~l~~If~~L~~~~~~~~~~~vc~~w~~ 40 (611)
.++...|++++. .-.-..+.++||..++
T Consensus 6 ~~v~~lI~~~l~-~i~P~t~l~lSr~~yk 33 (46)
T PF12586_consen 6 GPVHDLILDELS-RIRPLTYLRLSRYHYK 33 (46)
T ss_pred HhHHHHHHHHHH-hcCChhheeeeHHHhh
Confidence 678899999988 5555888888888875
No 101
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=22.69 E-value=2.4e+02 Score=26.94 Aligned_cols=32 Identities=22% Similarity=0.250 Sum_probs=17.7
Q ss_pred HHHHHhcCCccCEeeccccCCCCHHHHHHHHhh
Q 007252 492 LTALAAGCKRLADLDLKHCAKIDDSGFWALAYY 524 (611)
Q Consensus 492 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~ 524 (611)
+..+...+++|+.|.+.++ .|+..++.++...
T Consensus 247 ~a~ml~~n~sl~slnvesn-FItg~gi~a~~~a 278 (353)
T KOG3735|consen 247 IAEMLKENKSLTSLNVESN-FITGLGIMALLRA 278 (353)
T ss_pred HHHHHhhcchhhheecccc-ccccHHHHHHHHH
Confidence 3334444566666666666 6666555555443
Done!