Query 007252
Match_columns 611
No_of_seqs 347 out of 3557
Neff 11.3
Searched_HMMs 29240
Date Mon Mar 25 21:05:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007252.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007252hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p1m_B Transport inhibitor res 100.0 2.1E-42 7.3E-47 364.6 37.8 498 3-553 2-533 (594)
2 3ogk_B Coronatine-insensitive 100.0 7.9E-43 2.7E-47 367.5 30.2 496 9-556 15-543 (592)
3 2p1m_B Transport inhibitor res 100.0 5.4E-33 1.8E-37 292.8 37.8 448 98-582 45-535 (594)
4 3ogk_B Coronatine-insensitive 100.0 7.2E-32 2.5E-36 284.0 35.7 431 140-582 66-542 (592)
5 1z7x_W Ribonuclease inhibitor; 100.0 8.6E-27 3E-31 237.3 37.2 391 96-542 3-443 (461)
6 1z7x_W Ribonuclease inhibitor; 100.0 7.4E-27 2.5E-31 237.8 36.6 405 122-583 3-460 (461)
7 3t6q_A CD180 antigen; protein- 100.0 7.4E-31 2.5E-35 276.8 0.4 460 65-561 33-533 (606)
8 3t6q_A CD180 antigen; protein- 99.9 2.3E-29 7.8E-34 265.4 3.5 470 59-562 51-558 (606)
9 3rgz_A Protein brassinosteroid 99.9 1.8E-30 6E-35 279.7 -5.5 466 58-561 70-548 (768)
10 3rgz_A Protein brassinosteroid 99.9 3.7E-30 1.3E-34 277.2 -3.9 256 60-336 121-378 (768)
11 1ziw_A TOLL-like receptor 3; i 99.9 4.1E-29 1.4E-33 267.1 2.2 259 324-596 327-602 (680)
12 2ast_B S-phase kinase-associat 99.9 3.9E-26 1.3E-30 221.9 21.3 289 4-329 6-299 (336)
13 1ziw_A TOLL-like receptor 3; i 99.9 7.2E-29 2.5E-33 265.2 1.8 478 94-597 47-579 (680)
14 3vq2_A TLR4, TOLL-like recepto 99.9 2.4E-29 8.2E-34 265.3 -2.8 250 296-562 302-556 (606)
15 2z63_A TOLL-like receptor 4, v 99.9 6.6E-29 2.3E-33 260.2 -4.2 463 65-562 28-529 (570)
16 3vq2_A TLR4, TOLL-like recepto 99.9 5E-28 1.7E-32 255.2 2.0 480 65-586 32-553 (606)
17 2z81_A CD282 antigen, TOLL-lik 99.9 1.3E-26 4.4E-31 241.5 10.2 437 95-562 49-508 (549)
18 2z7x_B TOLL-like receptor 1, v 99.9 3.3E-26 1.1E-30 236.4 11.0 439 93-562 18-479 (520)
19 2z63_A TOLL-like receptor 4, v 99.9 5.5E-27 1.9E-31 245.7 -7.5 458 93-586 25-526 (570)
20 3j0a_A TOLL-like receptor 5; m 99.9 7.7E-28 2.6E-32 261.9 -15.3 183 64-259 23-214 (844)
21 3j0a_A TOLL-like receptor 5; m 99.9 8E-27 2.7E-31 253.9 -9.4 465 60-562 43-558 (844)
22 2z81_A CD282 antigen, TOLL-lik 99.9 1E-23 3.5E-28 219.6 13.5 386 172-586 73-505 (549)
23 1o6v_A Internalin A; bacterial 99.9 1E-21 3.5E-26 199.2 19.2 342 146-539 45-388 (466)
24 4fmz_A Internalin; leucine ric 99.9 3.7E-21 1.3E-25 187.6 22.0 299 197-561 42-343 (347)
25 1o6v_A Internalin A; bacterial 99.9 2.6E-21 8.8E-26 196.3 20.6 342 121-514 45-388 (466)
26 2z7x_B TOLL-like receptor 1, v 99.9 2.8E-23 9.4E-28 214.6 5.6 430 122-586 21-476 (520)
27 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 5E-23 1.7E-27 214.3 5.6 455 66-562 32-508 (562)
28 4ecn_A Leucine-rich repeat pro 99.9 1.7E-23 5.8E-28 223.3 0.6 344 195-563 444-839 (876)
29 4fmz_A Internalin; leucine ric 99.9 1.6E-20 5.4E-25 183.2 21.6 307 143-539 40-346 (347)
30 3v47_A TOLL-like receptor 5B a 99.9 6.4E-22 2.2E-26 200.9 10.4 124 297-433 208-333 (455)
31 4eco_A Uncharacterized protein 99.9 6.1E-23 2.1E-27 215.8 2.2 341 196-562 203-598 (636)
32 4ecn_A Leucine-rich repeat pro 99.9 9.2E-23 3.1E-27 217.7 2.4 323 197-542 489-843 (876)
33 2ast_B S-phase kinase-associat 99.8 1.2E-19 4.2E-24 176.0 23.0 243 293-542 39-287 (336)
34 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 2.1E-22 7.2E-27 209.6 2.6 415 65-539 52-510 (562)
35 4eco_A Uncharacterized protein 99.8 7.1E-23 2.4E-27 215.3 -0.9 347 197-565 247-633 (636)
36 3v47_A TOLL-like receptor 5B a 99.8 2.3E-22 8E-27 204.1 0.3 359 173-561 30-405 (455)
37 4g8a_A TOLL-like receptor 4; l 99.8 7.8E-22 2.7E-26 209.7 -1.6 228 325-562 348-578 (635)
38 3bz5_A Internalin-J, INLJ; leu 99.8 8.2E-20 2.8E-24 183.4 11.2 347 94-539 40-387 (457)
39 3bz5_A Internalin-J, INLJ; leu 99.8 2.5E-19 8.6E-24 179.9 13.5 313 120-540 40-353 (457)
40 2ca6_A RAN GTPase-activating p 99.8 1.5E-17 5.1E-22 164.3 24.4 192 344-542 92-319 (386)
41 3o6n_A APL1; leucine-rich repe 99.8 7E-20 2.4E-24 181.4 6.5 131 397-543 226-356 (390)
42 4g8a_A TOLL-like receptor 4; l 99.8 8.5E-21 2.9E-25 201.7 -3.1 205 92-308 48-256 (635)
43 3o6n_A APL1; leucine-rich repe 99.8 7.6E-19 2.6E-23 174.0 10.7 67 448-522 294-360 (390)
44 2ca6_A RAN GTPase-activating p 99.8 7.9E-17 2.7E-21 159.1 25.1 160 372-537 159-341 (386)
45 2id5_A Lingo-1, leucine rich r 99.8 7.2E-20 2.4E-24 186.7 2.7 301 200-539 33-333 (477)
46 3oja_B Anopheles plasmodium-re 99.7 1.5E-18 5.3E-23 181.3 7.9 317 172-548 50-367 (597)
47 3oja_B Anopheles plasmodium-re 99.7 1.2E-18 4E-23 182.3 6.1 304 146-483 50-354 (597)
48 2id5_A Lingo-1, leucine rich r 99.7 1.8E-18 6.1E-23 176.4 6.6 303 93-434 29-331 (477)
49 1jl5_A Outer protein YOPM; leu 99.7 3.8E-18 1.3E-22 171.2 1.4 184 95-313 10-207 (454)
50 3goz_A Leucine-rich repeat-con 99.7 3.4E-15 1.2E-19 145.8 18.6 244 290-561 11-294 (362)
51 1jl5_A Outer protein YOPM; leu 99.6 7.4E-17 2.5E-21 161.8 6.0 350 121-540 10-371 (454)
52 3goz_A Leucine-rich repeat-con 99.6 2.7E-15 9.2E-20 146.5 14.6 252 267-543 14-301 (362)
53 1xku_A Decorin; proteoglycan, 99.6 1.5E-16 5E-21 153.6 4.9 200 346-560 121-328 (330)
54 2z80_A TOLL-like receptor 2, v 99.6 6.1E-16 2.1E-20 150.8 5.8 255 275-562 52-312 (353)
55 2ft3_A Biglycan; proteoglycan, 99.6 8.2E-17 2.8E-21 155.5 -0.9 177 370-561 145-330 (332)
56 1xku_A Decorin; proteoglycan, 99.6 5.7E-16 1.9E-20 149.5 4.4 81 372-458 192-272 (330)
57 3o53_A Protein LRIM1, AGAP0063 99.6 3.8E-16 1.3E-20 149.5 1.4 247 267-561 26-272 (317)
58 2z80_A TOLL-like receptor 2, v 99.5 1.5E-14 5E-19 141.0 11.3 109 296-407 193-311 (353)
59 3o53_A Protein LRIM1, AGAP0063 99.5 4.6E-16 1.6E-20 148.9 0.4 247 241-537 26-273 (317)
60 2ft3_A Biglycan; proteoglycan, 99.5 5.8E-16 2E-20 149.5 0.3 132 372-510 193-330 (332)
61 3un9_A NLR family member X1; l 99.5 2.3E-13 7.9E-18 132.0 15.9 183 371-560 71-274 (372)
62 1wwl_A Monocyte differentiatio 99.5 2.3E-15 8E-20 143.6 1.4 203 324-541 93-311 (312)
63 3zyj_A Leucine-rich repeat-con 99.5 2.7E-15 9.1E-20 150.8 1.4 223 301-537 64-290 (440)
64 1ozn_A Reticulon 4 receptor; N 99.5 5.2E-15 1.8E-19 139.4 3.2 182 370-561 54-235 (285)
65 1ogq_A PGIP-2, polygalacturona 99.5 2.6E-16 9E-21 150.1 -6.4 108 200-312 51-160 (313)
66 3zyi_A Leucine-rich repeat-con 99.5 3.6E-15 1.2E-19 150.5 1.4 223 301-537 75-301 (452)
67 1ozn_A Reticulon 4 receptor; N 99.5 4.7E-15 1.6E-19 139.8 1.9 37 370-407 103-139 (285)
68 1ogq_A PGIP-2, polygalacturona 99.5 2.4E-16 8.3E-21 150.3 -7.6 179 370-562 123-302 (313)
69 4glp_A Monocyte differentiatio 99.5 4.5E-14 1.5E-18 134.6 7.9 228 300-541 63-309 (310)
70 2z66_A Variable lymphocyte rec 99.5 1.3E-15 4.5E-20 145.2 -3.6 114 421-539 148-261 (306)
71 2z66_A Variable lymphocyte rec 99.5 3.6E-15 1.2E-19 142.2 -1.3 61 370-433 197-258 (306)
72 3e4g_A ATP synthase subunit S, 99.4 2E-13 6.7E-18 114.2 8.6 104 398-503 62-170 (176)
73 3oja_A Leucine-rich immune mol 99.4 1.9E-14 6.7E-19 145.7 2.8 60 372-433 120-179 (487)
74 3zyi_A Leucine-rich repeat-con 99.4 4.7E-14 1.6E-18 142.3 4.9 223 122-357 75-301 (452)
75 3zyj_A Leucine-rich repeat-con 99.4 4.1E-14 1.4E-18 142.2 4.3 222 123-357 65-290 (440)
76 3oja_A Leucine-rich immune mol 99.4 1E-14 3.4E-19 147.9 -1.1 237 275-559 34-270 (487)
77 3e4g_A ATP synthase subunit S, 99.4 2.3E-13 7.8E-18 113.8 6.4 104 423-529 61-170 (176)
78 3g06_A SSPH2 (leucine-rich rep 99.4 1.8E-12 6.2E-17 134.0 14.6 13 199-211 61-73 (622)
79 3un9_A NLR family member X1; l 99.4 5.5E-12 1.9E-16 122.4 17.0 172 396-573 71-260 (372)
80 3g06_A SSPH2 (leucine-rich rep 99.4 9.5E-13 3.2E-17 136.1 12.3 266 199-549 40-306 (622)
81 1h6u_A Internalin H; cell adhe 99.4 8.4E-13 2.9E-17 125.4 9.8 191 324-540 39-231 (308)
82 1h6u_A Internalin H; cell adhe 99.4 1.6E-12 5.6E-17 123.4 10.6 167 370-561 61-227 (308)
83 4fcg_A Uncharacterized protein 99.4 2.2E-13 7.5E-18 130.6 3.5 125 273-405 181-309 (328)
84 4fcg_A Uncharacterized protein 99.3 2.6E-13 8.9E-18 130.1 1.3 231 172-458 80-310 (328)
85 1wwl_A Monocyte differentiatio 99.3 8.9E-14 3E-18 132.6 -2.1 200 371-586 94-304 (312)
86 3rfs_A Internalin B, repeat mo 99.3 9.4E-13 3.2E-17 122.8 2.4 191 371-586 40-230 (272)
87 2o6q_A Variable lymphocyte rec 99.3 4.1E-13 1.4E-17 125.1 -0.0 130 346-483 37-166 (270)
88 2z62_A TOLL-like receptor 4, v 99.3 3.7E-13 1.3E-17 126.1 -0.9 34 527-561 201-234 (276)
89 4ezg_A Putative uncharacterize 99.3 4.6E-12 1.6E-16 111.6 5.9 152 371-539 43-194 (197)
90 2o6q_A Variable lymphocyte rec 99.2 2.1E-12 7.2E-17 120.3 3.1 179 372-561 37-215 (270)
91 2z62_A TOLL-like receptor 4, v 99.2 3.9E-13 1.3E-17 125.9 -2.1 201 326-539 28-237 (276)
92 1h6t_A Internalin B; cell adhe 99.2 1.7E-11 5.9E-16 115.1 8.7 173 344-542 44-216 (291)
93 4glp_A Monocyte differentiatio 99.2 5.1E-12 1.7E-16 120.3 5.0 58 346-412 251-308 (310)
94 3rfs_A Internalin B, repeat mo 99.2 1.8E-12 6.3E-17 120.8 1.0 133 370-510 83-215 (272)
95 1h6t_A Internalin B; cell adhe 99.2 1.8E-11 6.1E-16 115.1 5.9 166 371-561 45-210 (291)
96 2xwt_C Thyrotropin receptor; s 99.2 3.5E-13 1.2E-17 123.2 -5.7 179 370-561 53-236 (239)
97 1p9a_G Platelet glycoprotein I 99.2 2.7E-12 9.4E-17 120.5 -0.1 147 325-483 9-157 (290)
98 1m9s_A Internalin B; cell inva 99.1 5.2E-11 1.8E-15 123.0 6.9 176 342-543 39-214 (605)
99 4ezg_A Putative uncharacterize 99.1 1.8E-10 6.2E-15 101.4 9.2 61 370-433 86-146 (197)
100 2xwt_C Thyrotropin receptor; s 99.1 3E-12 1E-16 116.9 -2.8 32 500-536 205-236 (239)
101 1p9a_G Platelet glycoprotein I 99.1 3.1E-11 1E-15 113.3 2.8 170 299-483 8-181 (290)
102 1m9s_A Internalin B; cell inva 99.1 6E-11 2.1E-15 122.5 5.0 165 324-510 41-207 (605)
103 2ra8_A Uncharacterized protein 99.0 1.1E-09 3.9E-14 105.0 12.3 73 473-548 251-328 (362)
104 2ra8_A Uncharacterized protein 99.0 1.6E-09 5.4E-14 104.0 13.0 163 365-537 165-341 (362)
105 3m19_A Variable lymphocyte rec 99.0 2.6E-11 8.8E-16 111.5 -0.8 158 372-539 35-192 (251)
106 3m19_A Variable lymphocyte rec 99.0 4.9E-11 1.7E-15 109.6 1.1 155 346-510 35-189 (251)
107 2je0_A Acidic leucine-rich nuc 99.0 9.9E-11 3.4E-15 97.9 2.6 130 422-558 16-147 (149)
108 3sb4_A Hypothetical leucine ri 99.0 1.4E-10 4.8E-15 111.3 2.5 125 346-480 202-327 (329)
109 1io0_A Tropomodulin; LRR prote 99.0 1.1E-08 3.7E-13 88.5 13.7 121 419-542 32-167 (185)
110 2ell_A Acidic leucine-rich nuc 98.9 1.1E-10 3.6E-15 100.0 -0.9 134 422-562 23-158 (168)
111 3sb4_A Hypothetical leucine ri 98.9 3.8E-10 1.3E-14 108.3 2.8 261 274-557 24-327 (329)
112 1io0_A Tropomodulin; LRR prote 98.9 2.5E-08 8.5E-13 86.2 13.9 127 439-568 26-167 (185)
113 1xeu_A Internalin C; cellular 98.9 2.8E-10 9.4E-15 105.1 0.8 149 370-541 39-187 (263)
114 2je0_A Acidic leucine-rich nuc 98.9 2.5E-09 8.7E-14 89.2 6.2 130 371-509 16-149 (149)
115 1xeu_A Internalin C; cellular 98.8 1.8E-09 6.3E-14 99.5 5.4 57 498-561 126-182 (263)
116 1fs1_A SKP2 F-BOX, cyclin A/CD 98.8 3.5E-09 1.2E-13 69.6 3.5 41 4-45 6-46 (53)
117 4ay9_X Follicle-stimulating ho 98.8 2.5E-10 8.4E-15 110.6 -3.6 37 275-313 30-66 (350)
118 2o6s_A Variable lymphocyte rec 98.7 4.6E-10 1.6E-14 99.8 -2.1 153 372-541 28-180 (208)
119 2ell_A Acidic leucine-rich nuc 98.7 6.8E-09 2.3E-13 88.6 5.1 131 371-510 23-157 (168)
120 2o6s_A Variable lymphocyte rec 98.7 6.1E-10 2.1E-14 99.0 -2.3 108 448-561 51-158 (208)
121 2xot_A Amphoterin-induced prot 98.7 2.1E-09 7.2E-14 104.5 0.7 157 373-538 40-201 (361)
122 3cvr_A Invasion plasmid antige 98.7 1.2E-08 4.2E-13 104.1 5.8 155 370-551 98-254 (571)
123 1a9n_A U2A', U2A'; complex (nu 98.7 2.6E-09 8.8E-14 92.0 0.7 106 450-561 43-150 (176)
124 2xot_A Amphoterin-induced prot 98.7 1.4E-09 4.8E-14 105.7 -2.1 176 375-562 21-200 (361)
125 4ay9_X Follicle-stimulating ho 98.6 1.5E-09 5.1E-14 105.1 -3.6 114 197-314 102-215 (350)
126 2v9t_B SLIT homolog 2 protein 98.6 1.1E-08 3.7E-13 91.5 1.5 59 372-433 32-90 (220)
127 2v70_A SLIT-2, SLIT homolog 2 98.6 2.1E-09 7.3E-14 96.1 -3.2 153 375-539 14-166 (220)
128 3e6j_A Variable lymphocyte rec 98.6 5.3E-09 1.8E-13 94.3 -1.0 133 397-539 40-172 (229)
129 2v9t_B SLIT homolog 2 protein 98.5 3.4E-09 1.2E-13 94.9 -2.6 133 397-538 32-164 (220)
130 1ds9_A Outer arm dynein; leuci 98.5 4.1E-09 1.4E-13 92.7 -2.1 39 499-538 114-152 (198)
131 1dce_A Protein (RAB geranylger 98.5 3.5E-10 1.2E-14 116.1 -10.7 101 450-561 442-543 (567)
132 2v70_A SLIT-2, SLIT homolog 2 98.5 5.7E-08 1.9E-12 86.8 4.7 131 373-511 33-164 (220)
133 3e6j_A Variable lymphocyte rec 98.5 9.1E-08 3.1E-12 86.1 5.8 131 372-511 40-170 (229)
134 3cvr_A Invasion plasmid antige 98.5 3.4E-08 1.2E-12 100.8 2.6 163 372-566 80-244 (571)
135 1ds9_A Outer arm dynein; leuci 98.5 1.1E-08 3.6E-13 90.0 -1.1 129 446-584 45-180 (198)
136 1a9n_A U2A', U2A'; complex (nu 98.5 3E-08 1E-12 85.3 1.4 130 448-586 18-148 (176)
137 1dce_A Protein (RAB geranylger 98.3 4.9E-08 1.7E-12 100.2 -1.3 104 370-481 461-567 (567)
138 1pgv_A TMD-1, tropomodulin TMD 98.3 1.2E-05 4.1E-10 68.6 12.8 109 448-558 40-164 (197)
139 1pgv_A TMD-1, tropomodulin TMD 98.2 2E-05 6.9E-10 67.2 13.6 123 415-539 33-170 (197)
140 4fs7_A Uncharacterized protein 98.1 8.4E-08 2.9E-12 94.4 -3.7 99 447-556 295-393 (394)
141 2wfh_A SLIT homolog 2 protein 98.1 2.6E-07 8.9E-12 80.5 -0.5 109 422-538 30-138 (193)
142 4fs7_A Uncharacterized protein 98.1 7.1E-08 2.4E-12 94.9 -4.7 320 120-479 69-393 (394)
143 4fdw_A Leucine rich hypothetic 98.1 5.4E-07 1.8E-11 88.2 0.9 83 342-432 296-379 (401)
144 2o6r_A Variable lymphocyte rec 98.1 2.8E-07 9.4E-12 79.3 -1.2 111 422-539 27-137 (177)
145 1w8a_A SLIT protein; signaling 98.0 2.3E-07 7.8E-12 80.9 -3.4 87 448-539 53-139 (192)
146 4fdw_A Leucine rich hypothetic 98.0 7.4E-07 2.5E-11 87.2 -0.4 58 447-510 298-355 (401)
147 4gt6_A Cell surface protein; l 98.0 1.4E-06 4.9E-11 85.6 1.1 104 370-483 263-366 (394)
148 2wfh_A SLIT homolog 2 protein 98.0 4.4E-06 1.5E-10 72.6 3.8 61 448-511 77-137 (193)
149 1w8a_A SLIT protein; signaling 97.9 3.9E-07 1.3E-11 79.4 -3.1 108 449-562 29-137 (192)
150 2o6r_A Variable lymphocyte rec 97.9 4.6E-06 1.6E-10 71.5 3.5 60 448-510 75-134 (177)
151 3l2o_B F-box only protein 4; s 97.8 5.7E-06 2E-10 73.9 1.2 42 4-46 2-43 (312)
152 4b8c_D Glucose-repressible alc 97.7 1.1E-06 3.6E-11 93.4 -4.3 104 370-483 222-325 (727)
153 4b8c_D Glucose-repressible alc 97.7 4.2E-06 1.4E-10 88.9 -0.3 110 393-514 220-329 (727)
154 2e31_A FBS1, F-box only protei 97.6 1.7E-05 5.9E-10 72.0 2.6 40 5-45 49-89 (297)
155 4gt6_A Cell surface protein; l 97.6 1.8E-05 6E-10 77.8 2.9 101 370-482 286-386 (394)
156 3g39_A Variable lymphocyte rec 97.4 1.8E-05 6.2E-10 67.1 -0.4 86 449-539 30-115 (170)
157 2r9u_A Variable lymphocyte rec 97.4 2E-05 7E-10 67.0 -0.4 86 449-539 33-118 (174)
158 3g39_A Variable lymphocyte rec 97.4 9.7E-06 3.3E-10 68.8 -2.5 104 450-562 10-113 (170)
159 2r9u_A Variable lymphocyte rec 97.1 3.7E-05 1.3E-09 65.4 -1.5 102 452-562 15-116 (174)
160 3v7d_B Cell division control p 97.0 0.00015 5E-09 73.1 1.0 40 4-44 12-51 (464)
161 3rw6_A Nuclear RNA export fact 97.0 0.0019 6.5E-08 58.4 8.0 87 246-334 167-259 (267)
162 4h09_A Hypothetical leucine ri 96.9 3.8E-05 1.3E-09 75.0 -3.9 127 370-509 215-342 (379)
163 3rw6_A Nuclear RNA export fact 96.9 0.0019 6.7E-08 58.3 7.2 61 420-483 167-229 (267)
164 4h09_A Hypothetical leucine ri 96.9 0.00034 1.2E-08 68.2 2.4 164 372-552 194-357 (379)
165 2ifg_A High affinity nerve gro 96.7 0.00016 5.3E-09 69.7 -1.2 105 427-539 12-116 (347)
166 1p22_A F-BOX/WD-repeat protein 96.7 0.00031 1.1E-08 70.0 0.7 42 3-45 7-52 (435)
167 2ovr_B FBW7, F-BOX/WD repeat p 96.7 0.0005 1.7E-08 68.7 2.1 41 4-45 16-56 (445)
168 2ifg_A High affinity nerve gro 96.5 0.00033 1.1E-08 67.3 -0.5 88 421-514 29-116 (347)
169 3rfe_A Platelet glycoprotein I 73.2 1.1 3.9E-05 35.0 1.2 37 500-538 31-67 (130)
170 3rfe_A Platelet glycoprotein I 66.9 3.9 0.00013 31.9 3.1 36 200-235 32-67 (130)
171 2lz0_A Uncharacterized protein 28.7 15 0.00051 26.9 0.5 35 447-483 18-52 (100)
No 1
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=100.00 E-value=2.1e-42 Score=364.60 Aligned_cols=498 Identities=22% Similarity=0.315 Sum_probs=281.0
Q ss_pred CCCcccCCcHHHHHHHHhhhCCCCCchhhHhhchhHHhhhcccccccccch--HHHHHHHHhcCCCCcEEeccCCCCCCh
Q 007252 3 GSSALDVLTEDLLVRVREKIGDELDSKTWRLVCKEFSRVDSVTRTTLRVLR--VEFLFILLDKYPYIKTLDLSVCPRVND 80 (611)
Q Consensus 3 ~~~~~~~LP~e~l~~If~~L~~~~~~~~~~~vc~~w~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~L~l~~~~~~~~ 80 (611)
+.|.|+.||+|++.+||+||+..+|+.++++|||+|+++....+..+.... ...+..++.+++++++|+++++..+.+
T Consensus 2 ~~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~ 81 (594)
T 2p1m_B 2 QKRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFAD 81 (594)
T ss_dssp --------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTSSCHHHHHHHCTTCCEEEEECSCGGGG
T ss_pred cccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeeccccccCHHHHHhhCCCceEEeccCCCchhh
Confidence 357899999999999999999788999999999999998433333332221 122456677888888888888765433
Q ss_pred hhHHHHhhhhhhhhccCCceEEeccccCCChHHHHHHHHhCCCccEEeccCCCCCChhhhHHhh-cCCCCcEEeccCCCC
Q 007252 81 GTVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREAAALS-FASGLKEVKLDKCLN 159 (611)
Q Consensus 81 ~~~~~l~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~ 159 (611)
..+ . +..| .......+..+...+++|++|+++++. +.+..+..+. .+++|++|++.+|..
T Consensus 82 ~~l--~----~~~~------------~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~L~~L~L~~~~~ 142 (594)
T 2p1m_B 82 FNL--V----PDGW------------GGYVYPWIEAMSSSYTWLEEIRLKRMV-VTDDCLELIAKSFKNFKVLVLSSCEG 142 (594)
T ss_dssp GTC--S----CTTS------------CCBCHHHHHHHHHHCTTCCEEEEESCB-CCHHHHHHHHHHCTTCCEEEEESCEE
T ss_pred ccc--c----cccc------------cchhhHHHHHHHHhCCCCCeEEeeCcE-EcHHHHHHHHHhCCCCcEEeCCCcCC
Confidence 321 0 0011 022334566666778888888887664 5565555554 467777777777656
Q ss_pred CChHHHHHHHhcCCccceeecccccccChHH---HHHHHHcCCcCcEEeccCcc--cChHHHHHh-hhcCCCcEEEecCC
Q 007252 160 VTDVGLAKIAVRCVNLERLSLKWCMEISDLG---IDLLCKKCLDLKSLDVSYLK--LTNDSFCSI-ATLAKLESLVMVGC 233 (611)
Q Consensus 160 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~l~~~~~~L~~L~l~~~~--~~~~~~~~l-~~~~~L~~L~l~~~ 233 (611)
+++.++..+...+++|++|++.+|. +++.+ +..+...+++|++|+++++. ++...+..+ ..+++|++|++.+|
T Consensus 143 ~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 143 FSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp EEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred CCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 6666666666567777777777663 33322 22233345666666666663 444444443 34566666666665
Q ss_pred CCCChhHHHHHHhcCCCccEEEeccccc-cCh---HHHHHHHhcCCCCcee-ccCCCCCccchhHHHHhhcCCCccEEEc
Q 007252 234 PCVDDTGLRFLESGCPLLKTIFVSRCKF-VSS---TGLISVIRGHSGLLQL-DAGHCFSELSTTLLHHMRDLKNLEAITM 308 (611)
Q Consensus 234 ~~~~~~~~~~l~~~~~~L~~L~l~~~~~-~~~---~~l~~~~~~~~~L~~L-~l~~~~~~~~~~~~~~l~~~~~L~~L~l 308 (611)
..+ ..+..+...+++|++|++..+.. ... .++...+.++++|+.+ .+... ........+..+++|++|++
T Consensus 222 ~~~--~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~---~~~~l~~~~~~~~~L~~L~L 296 (594)
T 2p1m_B 222 VPL--EKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDA---VPAYLPAVYSVCSRLTTLNL 296 (594)
T ss_dssp SCH--HHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTC---CGGGGGGGHHHHTTCCEEEC
T ss_pred CcH--HHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCccc---chhhHHHHHHhhCCCCEEEc
Confidence 322 22444444466666666554322 111 1233334455556555 22211 11122222334555666666
Q ss_pred cCcccChHHHHHHHHhCCCCcEEeeccCCCCCCCCCCCCCcEEecCCCccCChhHHHHHHhccCCCcEEec--------C
Q 007252 309 DGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTDSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDL--------T 380 (611)
Q Consensus 309 ~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l--------~ 380 (611)
+++.+++..+..+...+++|++|++ .+| +.+.++..+...+++|++|++ .
T Consensus 297 ~~~~l~~~~l~~~~~~~~~L~~L~l--------------------~~~--~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~ 354 (594)
T 2p1m_B 297 SYATVQSYDLVKLLCQCPKLQRLWV--------------------LDY--IEDAGLEVLASTCKDLRELRVFPSEPFVME 354 (594)
T ss_dssp TTCCCCHHHHHHHHTTCTTCCEEEE--------------------EGG--GHHHHHHHHHHHCTTCCEEEEECSCTTCSS
T ss_pred cCCCCCHHHHHHHHhcCCCcCEEeC--------------------cCc--cCHHHHHHHHHhCCCCCEEEEecCcccccc
Confidence 6555555555444434444444443 333 344555556656777777777 2
Q ss_pred CCCCCChhhhhhhc-cCCCceEEEecCCCCCChHhHHHHHhcCCCCcEEecc-----CCCCCC----HHHHHHHHhcCcc
Q 007252 381 DCNGVNDKGLEYLS-RCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLY-----KCSGIG----DDGLAALSNGCKK 450 (611)
Q Consensus 381 ~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~-----~~~~~~----~~~~~~~~~~~~~ 450 (611)
++..+++.++..+. .+++|++|.+. |..+++.++..+...+++|++|+++ +|+.++ +.++..+...|++
T Consensus 355 ~~~~l~~~~l~~l~~~~~~L~~L~~~-~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~ 433 (594)
T 2p1m_B 355 PNVALTEQGLVSVSMGCPKLESVLYF-CRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKD 433 (594)
T ss_dssp CSSCCCHHHHHHHHHHCTTCCEEEEE-ESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTT
T ss_pred cCCCCCHHHHHHHHHhchhHHHHHHh-cCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCC
Confidence 33455555555444 36666666443 3366666666665556666666666 455666 5566666666666
Q ss_pred CceecccccCCCChHHHHHhhC-CCCCCEEecCCCccccHHHHHHHHhcCCccCEeeccccCCCCHHHHHHHHhhCCCCC
Q 007252 451 LKKLNLSYCVNVTDRGMEHIRF-IEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQNLR 529 (611)
Q Consensus 451 L~~L~l~~c~~l~~~~~~~l~~-~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~ 529 (611)
|++|++++ .+++.++..+.. +++|+.|++++| .+++.++..+..++++|+.|++++| .+++.++..+...+++|+
T Consensus 434 L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~L~~L~L~~n-~~~~~~~~~~~~~l~~L~ 509 (594)
T 2p1m_B 434 LRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFA-GDSDLGMHHVLSGCDSLRKLEIRDC-PFGDKALLANASKLETMR 509 (594)
T ss_dssp CCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESC-CSSHHHHHHHHHHCTTCCEEEEESC-SCCHHHHHHTGGGGGGSS
T ss_pred ccEEeecC--cccHHHHHHHHHhchhccEeeccCC-CCcHHHHHHHHhcCCCcCEEECcCC-CCcHHHHHHHHHhCCCCC
Confidence 66666644 566666655554 666666666664 3556555555555666666666666 445555555555556666
Q ss_pred EEEeccCCCChhHHHHHh-cccccc
Q 007252 530 QINLSYCALSDMALCMVM-GNMTRL 553 (611)
Q Consensus 530 ~L~l~~~~l~~~~~~~~l-~~~~~L 553 (611)
+|++++|++++.+. ..+ ..+|+|
T Consensus 510 ~L~l~~~~~~~~~~-~~l~~~lp~l 533 (594)
T 2p1m_B 510 SLWMSSCSVSFGAC-KLLGQKMPKL 533 (594)
T ss_dssp EEEEESSCCBHHHH-HHHHHHCTTE
T ss_pred EEeeeCCCCCHHHH-HHHHHhCCCC
Confidence 66666666665555 444 344544
No 2
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=100.00 E-value=7.9e-43 Score=367.54 Aligned_cols=496 Identities=19% Similarity=0.235 Sum_probs=363.9
Q ss_pred CCcHHHHHHHHhhhCCCCCchhhHhhchhHHhhhcccccccccch--HHHHHHHHhcCCCCcEEeccCCCCCChhhHHHH
Q 007252 9 VLTEDLLVRVREKIGDELDSKTWRLVCKEFSRVDSVTRTTLRVLR--VEFLFILLDKYPYIKTLDLSVCPRVNDGTVSFL 86 (611)
Q Consensus 9 ~LP~e~l~~If~~L~~~~~~~~~~~vc~~w~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l 86 (611)
+||+|++.+||+||+..+|+.++++|||+|+.+....+..+.+.. ...+..++++++++++|++++|+.+.+... +
T Consensus 15 ~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~--~ 92 (592)
T 3ogk_B 15 ATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNL--I 92 (592)
T ss_dssp CCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHCCEEEESCGGGSCHHHHHHHCTTCSEEEEECSCGGGGGTC--S
T ss_pred CCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhccccEEEEeeccccChHHHHHhCCCCeEEEecCCcchhhccc--c
Confidence 799999999999993399999999999999998655544444332 234677888899999999998876544422 1
Q ss_pred hhhhhhhhccCCceEEeccccCCChHHHHHHHHhCCCccEEeccCCCCCChhhhHHhhc-CCC-CcEEeccCCCCCChHH
Q 007252 87 LSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREAAALSF-ASG-LKEVKLDKCLNVTDVG 164 (611)
Q Consensus 87 ~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~-~~~-L~~L~l~~~~~~~~~~ 164 (611)
+. .........+..+...+++|++|+++++ .+.+.....+.. +++ |++|++.+|..+++.+
T Consensus 93 ----~~------------~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~ 155 (592)
T 3ogk_B 93 ----PE------------NWGGYVTPWVTEISNNLRQLKSVHFRRM-IVSDLDLDRLAKARADDLETLKLDKCSGFTTDG 155 (592)
T ss_dssp ----CT------------TSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHH
T ss_pred ----cc------------cccccchHHHHHHHhhCCCCCeEEeecc-EecHHHHHHHHHhccccCcEEECcCCCCcCHHH
Confidence 01 1124456677788888999999999977 477777777766 344 9999999887777777
Q ss_pred HHHHHhcCCccceeecccccccChHH---HHHHHHcCCcCcEEeccCcccC---hHHHHH-hhhcCCCcEEEecCCCCCC
Q 007252 165 LAKIAVRCVNLERLSLKWCMEISDLG---IDLLCKKCLDLKSLDVSYLKLT---NDSFCS-IATLAKLESLVMVGCPCVD 237 (611)
Q Consensus 165 ~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~l~~~~~~L~~L~l~~~~~~---~~~~~~-l~~~~~L~~L~l~~~~~~~ 237 (611)
+..+...|++|++|++.+| .+++.+ +..+...+++|++|+++++.++ ...+.. +..+++|++|++.+|. +.
T Consensus 156 l~~~~~~~~~L~~L~L~~~-~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~ 233 (592)
T 3ogk_B 156 LLSIVTHCRKIKTLLMEES-SFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE-IL 233 (592)
T ss_dssp HHHHHHHCTTCSEEECTTC-EEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-GG
T ss_pred HHHHHhhCCCCCEEECccc-cccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc-HH
Confidence 8777777999999999987 444333 5566778899999999888664 333433 4568888888888754 32
Q ss_pred hhHHHHHHhcCCCccEEEecccccc-ChHHHHHHHhcCCCCceeccCCCCCccchhHHHHhhcCCCccEEEccCcccChH
Q 007252 238 DTGLRFLESGCPLLKTIFVSRCKFV-SSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDS 316 (611)
Q Consensus 238 ~~~~~~l~~~~~~L~~L~l~~~~~~-~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 316 (611)
. +......+++|++|+++..... ........+..+++|+.+.+.+. ........+..+++|++|+++++.+++.
T Consensus 234 ~--l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~---~~~~l~~~~~~~~~L~~L~Ls~~~l~~~ 308 (592)
T 3ogk_B 234 E--LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM---GPNEMPILFPFAAQIRKLDLLYALLETE 308 (592)
T ss_dssp G--GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC---CTTTGGGGGGGGGGCCEEEETTCCCCHH
T ss_pred H--HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCcccc---chhHHHHHHhhcCCCcEEecCCCcCCHH
Confidence 2 2334444888888888753221 11111122344567777777654 2233444555677788888887777777
Q ss_pred HHHHHHHhCCCCcEEeeccCCCCCCCCCCCCCcEEecCCCccCChhHHHHHHhccCCCcEEecCC----------CCCCC
Q 007252 317 CFQTISFNCKSLVEIGLSKCLGVTNTDSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTD----------CNGVN 386 (611)
Q Consensus 317 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~----------~~~~~ 386 (611)
.+..+...+++|++|++. ..+.+.++..+...+++|++|++++ |+.++
T Consensus 309 ~~~~~~~~~~~L~~L~L~----------------------~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~ 366 (592)
T 3ogk_B 309 DHCTLIQKCPNLEVLETR----------------------NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVS 366 (592)
T ss_dssp HHHHHHTTCTTCCEEEEE----------------------GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCC
T ss_pred HHHHHHHhCcCCCEEecc----------------------CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccC
Confidence 666555555556555554 2256677777777899999999994 78888
Q ss_pred hhhhhhhc-cCCCceEEEecCCCCCChHhHHHHHhcCCCCcEEecc---CCCCCCH----HHHHHHHhcCccCceecccc
Q 007252 387 DKGLEYLS-RCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLY---KCSGIGD----DGLAALSNGCKKLKKLNLSY 458 (611)
Q Consensus 387 ~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~---~~~~~~~----~~~~~~~~~~~~L~~L~l~~ 458 (611)
+.++..+. .+++|++|.+. +..+++.++..+...+++|++|+++ .|+.+++ .++..+...|++|++|++++
T Consensus 367 ~~~~~~l~~~~~~L~~L~l~-~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~ 445 (592)
T 3ogk_B 367 QRGLIALAQGCQELEYMAVY-VSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYL 445 (592)
T ss_dssp HHHHHHHHHHCTTCSEEEEE-ESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEEC
T ss_pred HHHHHHHHhhCccCeEEEee-cCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEec
Confidence 88776644 58999999994 4588998888888779999999997 3567775 57888888899999999988
Q ss_pred cCC-CChHHHHHhhC-CCCCCEEecCCCccccHHHHHHHHhcCCccCEeeccccCCCCHHHHHHHHhhCCCCCEEEeccC
Q 007252 459 CVN-VTDRGMEHIRF-IEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQNLRQINLSYC 536 (611)
Q Consensus 459 c~~-l~~~~~~~l~~-~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~~ 536 (611)
|.+ +++.++..+.. +++|+.|++++| .+++.++..+..++++|++|++++| .+++.++..+...+++|++|++++|
T Consensus 446 ~~~~l~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~ls~n 523 (592)
T 3ogk_B 446 RQGGLTDLGLSYIGQYSPNVRWMLLGYV-GESDEGLMEFSRGCPNLQKLEMRGC-CFSERAIAAAVTKLPSLRYLWVQGY 523 (592)
T ss_dssp CGGGCCHHHHHHHHHSCTTCCEEEECSC-CSSHHHHHHHHTCCTTCCEEEEESC-CCBHHHHHHHHHHCSSCCEEEEESC
T ss_pred CCCCccHHHHHHHHHhCccceEeeccCC-CCCHHHHHHHHhcCcccCeeeccCC-CCcHHHHHHHHHhcCccCeeECcCC
Confidence 663 78888877764 899999999985 6888888888888999999999999 5888888888888899999999999
Q ss_pred CCChhHHHHHhc-cccccccc
Q 007252 537 ALSDMALCMVMG-NMTRLQDA 556 (611)
Q Consensus 537 ~l~~~~~~~~l~-~~~~L~~l 556 (611)
++++.+. ..+. .+|.++..
T Consensus 524 ~it~~~~-~~l~~~~p~l~~~ 543 (592)
T 3ogk_B 524 RASMTGQ-DLMQMARPYWNIE 543 (592)
T ss_dssp BCCTTCT-TGGGGCCTTEEEE
T ss_pred cCCHHHH-HHHHHhCCCcEEE
Confidence 9998877 4444 45555433
No 3
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=100.00 E-value=5.4e-33 Score=292.83 Aligned_cols=448 Identities=20% Similarity=0.292 Sum_probs=319.1
Q ss_pred CceEEeccccCCChHHHHHHHHhCCCccEEeccCCCCCChhh-------------hH-HhhcCCCCcEEeccCCCCCChH
Q 007252 98 LKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDRE-------------AA-ALSFASGLKEVKLDKCLNVTDV 163 (611)
Q Consensus 98 l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~-------------~~-~l~~~~~L~~L~l~~~~~~~~~ 163 (611)
.+++++..+..... ..+...+++|++|++.++..+.+.. .. ....+++|++|+++++ .+++.
T Consensus 45 ~~~l~~~~~~~~~~---~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~~~~~ 120 (594)
T 2p1m_B 45 RRKVFIGNCYAVSP---ATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRM-VVTDD 120 (594)
T ss_dssp CCEEEESSTTSSCH---HHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHH
T ss_pred ceEEeeccccccCH---HHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCc-EEcHH
Confidence 34666666543322 2445678889999888765433221 11 2235678888888875 47777
Q ss_pred HHHHHHhcCCccceeecccccccChHHHHHHHHcCCcCcEEeccCcccChHHHHHhh----hcCCCcEEEecCCC-CCCh
Q 007252 164 GLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIA----TLAKLESLVMVGCP-CVDD 238 (611)
Q Consensus 164 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~----~~~~L~~L~l~~~~-~~~~ 238 (611)
.+..+...+++|++|++.+|..+++.++..+...+++|++|++++|.+++.....+. .+++|++|++++|. .++.
T Consensus 121 ~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~ 200 (594)
T 2p1m_B 121 CLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSF 200 (594)
T ss_dssp HHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCH
T ss_pred HHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCH
Confidence 777776568888888888776666666777777788888888887755443333332 45677777777664 4555
Q ss_pred hHHHHHHhcCCCccEEEeccccccChHHHHHHHhcCCCCceeccCCCCCccch----hHHHHhhcCCCccEEE-ccCccc
Q 007252 239 TGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELST----TLLHHMRDLKNLEAIT-MDGARI 313 (611)
Q Consensus 239 ~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~l~~~~~L~~L~-l~~~~~ 313 (611)
..+..+...+++|++|++.+|.. ..+++..+..+++|++|.+..+...... .....+..+++|+.+. +.+ .
T Consensus 201 ~~l~~l~~~~~~L~~L~L~~~~~--~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~--~ 276 (594)
T 2p1m_B 201 SALERLVTRCPNLKSLKLNRAVP--LEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWD--A 276 (594)
T ss_dssp HHHHHHHHHCTTCCEEECCTTSC--HHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBT--C
T ss_pred HHHHHHHHhCCCCcEEecCCCCc--HHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcc--c
Confidence 66666665577777777777532 3336666667777777776554321111 1223344455555552 211 1
Q ss_pred ChHHHHHHHHhCCCCcEEeeccCCCCCCCCCCCCCcEEecCCCccCChhHHHHHHhccCCCcEEecCCCCCCChhhhhhh
Q 007252 314 SDSCFQTISFNCKSLVEIGLSKCLGVTNTDSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYL 393 (611)
Q Consensus 314 ~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l 393 (611)
....+..+. ..+++|++|++++|. +++..+..+...+++|++|++.+| +++.++..+
T Consensus 277 ~~~~l~~~~--------------------~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~--~~~~~l~~l 333 (594)
T 2p1m_B 277 VPAYLPAVY--------------------SVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY--IEDAGLEVL 333 (594)
T ss_dssp CGGGGGGGH--------------------HHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG--GHHHHHHHH
T ss_pred chhhHHHHH--------------------HhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc--cCHHHHHHH
Confidence 111222221 234666777777766 777778887889999999999985 666666665
Q ss_pred c-cCCCceEEEe--------cCCCCCChHhHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhcCccCceeccc-----cc
Q 007252 394 S-RCSELLFLKL--------GLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKKLKKLNLS-----YC 459 (611)
Q Consensus 394 ~-~~~~L~~L~l--------~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~-----~c 459 (611)
. .+++|++|++ ..+..+++.++..+...+++|++|.+ +|+.+++.++..+...+++|++|+++ +|
T Consensus 334 ~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~-~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~ 412 (594)
T 2p1m_B 334 ASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLY-FCRQMTNAALITIARNRPNMTRFRLCIIEPKAP 412 (594)
T ss_dssp HHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEE-EESCCCHHHHHHHHHHCTTCCEEEEEESSTTCC
T ss_pred HHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHH-hcCCcCHHHHHHHHhhCCCcceeEeecccCCCc
Confidence 5 5899999999 44568899999888888999999965 46789999999998889999999999 67
Q ss_pred CCCC----hHHHHH-hhCCCCCCEEecCCCccccHHHHHHHHhcCCccCEeeccccCCCCHHHHHHHHhhCCCCCEEEec
Q 007252 460 VNVT----DRGMEH-IRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQNLRQINLS 534 (611)
Q Consensus 460 ~~l~----~~~~~~-l~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~ 534 (611)
+.++ +.++.. +..+++|++|++++ .+++.++..+...+++|+.|++++| .+++.++..+...+++|++|+++
T Consensus 413 ~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~L~~L~L~ 489 (594)
T 2p1m_B 413 DYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFA-GDSDLGMHHVLSGCDSLRKLEIR 489 (594)
T ss_dssp CTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESC-CSSHHHHHHHHHHCTTCCEEEEE
T ss_pred ccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCC-CCcHHHHHHHHhcCCCcCEEECc
Confidence 8888 555554 45799999999976 7889888888877999999999999 79999998888889999999999
Q ss_pred cCCCChhHHHHHhccccccccceeecccCCCHHHHHHHHhhcCCCccc
Q 007252 535 YCALSDMALCMVMGNMTRLQDAKLVHLTNCTREGFELALRSCCMRIKK 582 (611)
Q Consensus 535 ~~~l~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~c~~l~~ 582 (611)
+|++++.+....+..+++|+.|++.+|+. +..+++.+... +|+++.
T Consensus 490 ~n~~~~~~~~~~~~~l~~L~~L~l~~~~~-~~~~~~~l~~~-lp~l~i 535 (594)
T 2p1m_B 490 DCPFGDKALLANASKLETMRSLWMSSCSV-SFGACKLLGQK-MPKLNV 535 (594)
T ss_dssp SCSCCHHHHHHTGGGGGGSSEEEEESSCC-BHHHHHHHHHH-CTTEEE
T ss_pred CCCCcHHHHHHHHHhCCCCCEEeeeCCCC-CHHHHHHHHHh-CCCCEE
Confidence 99998888733455699999999999964 88888886544 777754
No 4
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=100.00 E-value=7.2e-32 Score=283.96 Aligned_cols=431 Identities=19% Similarity=0.208 Sum_probs=256.1
Q ss_pred hHHhhcCCCCcEEeccCCCCCC-------------hHHHHHHHhcCCccceeecccccccChHHHHHHHHcCCc-CcEEe
Q 007252 140 AAALSFASGLKEVKLDKCLNVT-------------DVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLD-LKSLD 205 (611)
Q Consensus 140 ~~~l~~~~~L~~L~l~~~~~~~-------------~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~-L~~L~ 205 (611)
...+.++++|++|++.+|..+. ...+..+...+++|++|+++++ .+++..+..+...++. |++|+
T Consensus 66 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~~L~~L~ 144 (592)
T 3ogk_B 66 DRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRM-IVSDLDLDRLAKARADDLETLK 144 (592)
T ss_dssp HHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHHHHHHHHHHHGGGCCEEE
T ss_pred HHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeecc-EecHHHHHHHHHhccccCcEEE
Confidence 4456678889999997764332 2234555555777777777766 5666665555554554 77777
Q ss_pred ccCc-ccChHHHHHh-hhcCCCcEEEecCCCCCChh---HHHHHHhcCCCccEEEeccccc--cChHHHHHHHhcCCCCc
Q 007252 206 VSYL-KLTNDSFCSI-ATLAKLESLVMVGCPCVDDT---GLRFLESGCPLLKTIFVSRCKF--VSSTGLISVIRGHSGLL 278 (611)
Q Consensus 206 l~~~-~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~---~~~~l~~~~~~L~~L~l~~~~~--~~~~~l~~~~~~~~~L~ 278 (611)
++++ .+....+..+ ..+++|++|++.+|. +++. .+..+...+++|++|+++++.. +....+..+...+++|+
T Consensus 145 L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~ 223 (592)
T 3ogk_B 145 LDKCSGFTTDGLLSIVTHCRKIKTLLMEESS-FSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLV 223 (592)
T ss_dssp EESCEEEEHHHHHHHHHHCTTCSEEECTTCE-EECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCC
T ss_pred CcCCCCcCHHHHHHHHhhCCCCCEEECcccc-ccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCc
Confidence 7766 3444444443 356777777777653 3222 1444555567777777765432 23455666666677777
Q ss_pred eeccCCCCCccchhHHHHhhcCCCccEEEccCcccCh--HHHHHHHHhCCCCcEEeeccCCCCCC---CCCCCCCcEEec
Q 007252 279 QLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISD--SCFQTISFNCKSLVEIGLSKCLGVTN---TDSCRGLVCLKI 353 (611)
Q Consensus 279 ~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~~l~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~L~~L~l 353 (611)
.|++.++.. ......+..+++|++|.+....... .........+++|+.+.+.+.....- ...+++|++|++
T Consensus 224 ~L~L~~~~~---~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~L 300 (592)
T 3ogk_B 224 SVKVGDFEI---LELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDL 300 (592)
T ss_dssp EEECSSCBG---GGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEE
T ss_pred EEeccCccH---HHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEec
Confidence 777766532 1234556666777777765432110 00001112445666666655321111 455667777777
Q ss_pred CCCccCChhHHHHHHhccCCCcEEecCCCCCCChhhhhhh-ccCCCceEEEecC----------CCCCChHhHHHHHhcC
Q 007252 354 ESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYL-SRCSELLFLKLGL----------CENISDKGLFYIASNC 422 (611)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l-~~~~~L~~L~l~~----------~~~~~~~~~~~l~~~~ 422 (611)
++|. +++..+..+...+++|++|++.+ .+.+.++..+ ..+++|++|++++ |..+++.++..+...+
T Consensus 301 s~~~-l~~~~~~~~~~~~~~L~~L~L~~--~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~ 377 (592)
T 3ogk_B 301 LYAL-LETEDHCTLIQKCPNLEVLETRN--VIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGC 377 (592)
T ss_dssp TTCC-CCHHHHHHHHTTCTTCCEEEEEG--GGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHC
T ss_pred CCCc-CCHHHHHHHHHhCcCCCEEeccC--ccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhC
Confidence 7766 66666555555677777777763 4555555444 3566777777774 5566666666666667
Q ss_pred CCCcEEeccCCCCCCHHHHHHHHhcCccCceecccc---cCCCChH----HHHH-hhCCCCCCEEecCCCc-cccHHHHH
Q 007252 423 LRIQGLDLYKCSGIGDDGLAALSNGCKKLKKLNLSY---CVNVTDR----GMEH-IRFIEDLSDLELRGLT-KITSAGLT 493 (611)
Q Consensus 423 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~---c~~l~~~----~~~~-l~~~~~L~~L~l~~c~-~l~~~~~~ 493 (611)
++|++|++ .|+.+++.++..+.+.+++|++|++++ |+.+++. ++.. +..+++|++|+++.|. .+++..+.
T Consensus 378 ~~L~~L~l-~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~ 456 (592)
T 3ogk_B 378 QELEYMAV-YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLS 456 (592)
T ss_dssp TTCSEEEE-EESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHH
T ss_pred ccCeEEEe-ecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHH
Confidence 77777777 345667776666666677777777763 4455542 3322 3457777777776554 35666666
Q ss_pred HHHhcCCccCEeeccccCCCCHHHHHHHHhhCCCCCEEEeccCCCChhHHHHHhccccccccceeecccCCCHHHHHHHH
Q 007252 494 ALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQNLRQINLSYCALSDMALCMVMGNMTRLQDAKLVHLTNCTREGFELAL 573 (611)
Q Consensus 494 ~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~ 573 (611)
.+...+++|+.|++++| .+++.++..+...+++|++|++++|++++.+....+..+++|+.|++.+|. ++..++..+.
T Consensus 457 ~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~-it~~~~~~l~ 534 (592)
T 3ogk_B 457 YIGQYSPNVRWMLLGYV-GESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR-ASMTGQDLMQ 534 (592)
T ss_dssp HHHHSCTTCCEEEECSC-CSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB-CCTTCTTGGG
T ss_pred HHHHhCccceEeeccCC-CCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCc-CCHHHHHHHH
Confidence 66666777777777777 666666666666667777777777777666553334466777777777774 6666655543
Q ss_pred hhcCCCccc
Q 007252 574 RSCCMRIKK 582 (611)
Q Consensus 574 ~~~c~~l~~ 582 (611)
.. +|.++.
T Consensus 535 ~~-~p~l~~ 542 (592)
T 3ogk_B 535 MA-RPYWNI 542 (592)
T ss_dssp GC-CTTEEE
T ss_pred Hh-CCCcEE
Confidence 33 554443
No 5
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=8.6e-27 Score=237.27 Aligned_cols=391 Identities=19% Similarity=0.223 Sum_probs=194.1
Q ss_pred cCCceEEeccccCCChHHHHHHHHhCCCccEEeccCCCCCChhhh----HHhhcCCCCcEEeccCCCCCChHHHHHHHhc
Q 007252 96 RSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREA----AALSFASGLKEVKLDKCLNVTDVGLAKIAVR 171 (611)
Q Consensus 96 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~----~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 171 (611)
+++++|+++++ .++...+..+...+++|++|+++++. +.+... ..+..+++|++|++++ ..+++.+...+...
T Consensus 3 ~~l~~L~Ls~~-~l~~~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~-n~l~~~~~~~l~~~ 79 (461)
T 1z7x_W 3 LDIQSLDIQCE-ELSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRS-NELGDVGVHCVLQG 79 (461)
T ss_dssp EEEEEEEEESC-CCCHHHHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTT-CCCHHHHHHHHHHT
T ss_pred ccceehhhhhc-ccCchhHHHHHhhcCCccEEEccCCC-CCHHHHHHHHHHHHhCCCcCEEeCCC-CcCChHHHHHHHHH
Confidence 34566666555 45555555555566666666666553 443322 2333446666666665 24555445555544
Q ss_pred CC----ccceeecccccccChHHH---HHHHHcCCcCcEEeccCcccChHHHHHhhh-----cCCCcEEEecCCCCCChh
Q 007252 172 CV----NLERLSLKWCMEISDLGI---DLLCKKCLDLKSLDVSYLKLTNDSFCSIAT-----LAKLESLVMVGCPCVDDT 239 (611)
Q Consensus 172 ~~----~L~~L~l~~~~~~~~~~~---~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~-----~~~L~~L~l~~~~~~~~~ 239 (611)
++ +|++|+++++ .+++.+. ......+++|++|+++++.++...+..+.. .++|++|++++|. +++.
T Consensus 80 l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~ 157 (461)
T 1z7x_W 80 LQTPSCKIQKLSLQNC-CLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCS-LSAA 157 (461)
T ss_dssp TCSTTCCCCEEECTTS-CCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGG
T ss_pred HhhCCCceeEEEccCC-CCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCC-CCHH
Confidence 44 4666666655 4444332 222234455555555555554444443332 2345555555542 3333
Q ss_pred HHHHH---HhcCCCccEEEeccccccChHHHHHHHh----cCCCCceeccCCCCCccch----hHHHHhhcCCCccEEEc
Q 007252 240 GLRFL---ESGCPLLKTIFVSRCKFVSSTGLISVIR----GHSGLLQLDAGHCFSELST----TLLHHMRDLKNLEAITM 308 (611)
Q Consensus 240 ~~~~l---~~~~~~L~~L~l~~~~~~~~~~l~~~~~----~~~~L~~L~l~~~~~~~~~----~~~~~l~~~~~L~~L~l 308 (611)
+...+ ...+++|++|+++++. +...+...+.. ..++|++|+++++.. .. .....+..+++|++|++
T Consensus 158 ~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l--~~~~~~~l~~~l~~~~~L~~L~L 234 (461)
T 1z7x_W 158 SCEPLASVLRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESCGV--TSDNCRDLCGIVASKASLRELAL 234 (461)
T ss_dssp GHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTSCC--BTTHHHHHHHHHHHCTTCCEEEC
T ss_pred HHHHHHHHHhhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCCCC--cHHHHHHHHHHHHhCCCccEEec
Confidence 22111 1224555555555432 22222222211 122444444444321 11 12223333444444444
Q ss_pred cCcccChHHHHHHHHhCCCCcEEeeccCCCCCCCCCCCCCcEEecCCCccCChhHHHHHHhccCCCcEEecCCCCCCChh
Q 007252 309 DGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTDSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDK 388 (611)
Q Consensus 309 ~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 388 (611)
+++.+.+.++..+.. .+...+++|++|++++ +.+++.
T Consensus 235 s~n~l~~~~~~~l~~------------------------------------------~~~~~~~~L~~L~L~~-n~l~~~ 271 (461)
T 1z7x_W 235 GSNKLGDVGMAELCP------------------------------------------GLLHPSSRLRTLWIWE-CGITAK 271 (461)
T ss_dssp CSSBCHHHHHHHHHH------------------------------------------HHTSTTCCCCEEECTT-SCCCHH
T ss_pred cCCcCChHHHHHHHH------------------------------------------HHhcCCCCceEEECcC-CCCCHH
Confidence 444433333322221 1111245555555555 355554
Q ss_pred hhhh----hccCCCceEEEecCCCCCChHhHHHHHhc----CCCCcEEeccCCCCCCHHH---HHHHHhcCccCceeccc
Q 007252 389 GLEY----LSRCSELLFLKLGLCENISDKGLFYIASN----CLRIQGLDLYKCSGIGDDG---LAALSNGCKKLKKLNLS 457 (611)
Q Consensus 389 ~~~~----l~~~~~L~~L~l~~~~~~~~~~~~~l~~~----~~~L~~L~l~~~~~~~~~~---~~~~~~~~~~L~~L~l~ 457 (611)
+... +..+++|++|+++++ .+++.+...+... .++|++|++++| .+++.+ +......+++|++|+++
T Consensus 272 ~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls 349 (461)
T 1z7x_W 272 GCGDLCRVLRAKESLKELSLAGN-ELGDEGARLLCETLLEPGCQLESLWVKSC-SFTAACCSHFSSVLAQNRFLLELQIS 349 (461)
T ss_dssp HHHHHHHHHHHCTTCCEEECTTC-CCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHHHCSSCCEEECC
T ss_pred HHHHHHHHHhhCCCcceEECCCC-CCchHHHHHHHHHhccCCccceeeEcCCC-CCchHHHHHHHHHHhhCCCccEEEcc
Confidence 4222 223566666666655 5555544444322 246777777765 354443 22233445777777777
Q ss_pred ccCCCChHHHHHhhC-----CCCCCEEecCCCccccHHHHHHH---HhcCCccCEeeccccCCCCHHHHHHHHhhCC---
Q 007252 458 YCVNVTDRGMEHIRF-----IEDLSDLELRGLTKITSAGLTAL---AAGCKRLADLDLKHCAKIDDSGFWALAYYSQ--- 526 (611)
Q Consensus 458 ~c~~l~~~~~~~l~~-----~~~L~~L~l~~c~~l~~~~~~~~---~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~--- 526 (611)
++ .+++.+...+.. .++|++|++++| .+++.+...+ ...+++|++|++++| .+++.+...+...++
T Consensus 350 ~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~N-~i~~~~~~~l~~~l~~~~ 426 (461)
T 1z7x_W 350 NN-RLEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNN-CLGDAGILQLVESVRQPG 426 (461)
T ss_dssp SS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSS-SCCHHHHHHHHHHHTSTT
T ss_pred CC-ccccccHHHHHHHHcCCCCceEEEECCCC-CCChhhHHHHHHHHHhCCCccEEECCCC-CCCHHHHHHHHHHhccCC
Confidence 74 566655554432 567777777774 5665443332 234778888888888 777777766665543
Q ss_pred -CCCEEEeccCCCChhH
Q 007252 527 -NLRQINLSYCALSDMA 542 (611)
Q Consensus 527 -~L~~L~l~~~~l~~~~ 542 (611)
+|+.|.+.++.++...
T Consensus 427 ~~L~~L~~~~~~~~~~~ 443 (461)
T 1z7x_W 427 CLLEQLVLYDIYWSEEM 443 (461)
T ss_dssp CCCCEEECTTCCCCHHH
T ss_pred cchhheeecccccCHHH
Confidence 4777877777765443
No 6
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=7.4e-27 Score=237.78 Aligned_cols=405 Identities=21% Similarity=0.295 Sum_probs=249.7
Q ss_pred CCccEEeccCCCCCChhhhHH-hhcCCCCcEEeccCCCCCChHHH---HHHHhcCCccceeecccccccChHHHHHHHHc
Q 007252 122 PLLESVDLSYCCGFGDREAAA-LSFASGLKEVKLDKCLNVTDVGL---AKIAVRCVNLERLSLKWCMEISDLGIDLLCKK 197 (611)
Q Consensus 122 ~~L~~L~l~~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 197 (611)
++|++|+++++. +.+..... +..+++|++|++.+| .+++... ......+++|++|+++++ .+.+.+...+...
T Consensus 3 ~~l~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~ 79 (461)
T 1z7x_W 3 LDIQSLDIQCEE-LSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCVLQG 79 (461)
T ss_dssp EEEEEEEEESCC-CCHHHHHHHHHHHTTCSEEEEESS-CCCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHHHHT
T ss_pred ccceehhhhhcc-cCchhHHHHHhhcCCccEEEccCC-CCCHHHHHHHHHHHHhCCCcCEEeCCCC-cCChHHHHHHHHH
Confidence 345566665432 33333332 444555555555553 3443322 222223455555555554 3444444444444
Q ss_pred CC----cCcEEeccCcccChHH----HHHhhhcCCCcEEEecCCCCCChhHHHHHHhcCCCccEEEeccccccChHHHHH
Q 007252 198 CL----DLKSLDVSYLKLTNDS----FCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLIS 269 (611)
Q Consensus 198 ~~----~L~~L~l~~~~~~~~~----~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~ 269 (611)
++ +|++|++++|.++..+ ...+..+++|++|+++++. +++.++..+...
T Consensus 80 l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~---------------------- 136 (461)
T 1z7x_W 80 LQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEG---------------------- 136 (461)
T ss_dssp TCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHH----------------------
T ss_pred HhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHH----------------------
Confidence 43 3555555555444322 2223344444444444432 333333322221
Q ss_pred HHhcCCCCceeccCCCCCccch----hHHHHhhcCCCccEEEccCcccChHHHHHHHHh----CCCCcEEeeccCCCCCC
Q 007252 270 VIRGHSGLLQLDAGHCFSELST----TLLHHMRDLKNLEAITMDGARISDSCFQTISFN----CKSLVEIGLSKCLGVTN 341 (611)
Q Consensus 270 ~~~~~~~L~~L~l~~~~~~~~~----~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~----~~~L~~L~l~~~~~~~~ 341 (611)
+....++|++|+++++.. .. .....+..+++|++|+++++.+.+.+...+... .++|++|+++++.
T Consensus 137 l~~~~~~L~~L~L~~n~l--~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~---- 210 (461)
T 1z7x_W 137 LLDPQCRLEKLQLEYCSL--SAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCG---- 210 (461)
T ss_dssp HTSTTCCCCEEECTTSCC--BGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSC----
T ss_pred HhcCCCcceEEECCCCCC--CHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCC----
Confidence 011133566666665532 22 234556667888888888888777666655432 4577777776652
Q ss_pred CCCCCCCcEEecCCCccCChhH---HHHHHhccCCCcEEecCCCCCCChhhhhhhc-----cCCCceEEEecCCCCCChH
Q 007252 342 TDSCRGLVCLKIESCNMITEKG---LYQLGSFCLRLEEIDLTDCNGVNDKGLEYLS-----RCSELLFLKLGLCENISDK 413 (611)
Q Consensus 342 ~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~-----~~~~L~~L~l~~~~~~~~~ 413 (611)
+++.+ +......+++|++|++++ +.+++.+...+. .+++|++|++++| .+++.
T Consensus 211 -----------------l~~~~~~~l~~~l~~~~~L~~L~Ls~-n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~ 271 (461)
T 1z7x_W 211 -----------------VTSDNCRDLCGIVASKASLRELALGS-NKLGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAK 271 (461)
T ss_dssp -----------------CBTTHHHHHHHHHHHCTTCCEEECCS-SBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHH
T ss_pred -----------------CcHHHHHHHHHHHHhCCCccEEeccC-CcCChHHHHHHHHHHhcCCCCceEEECcCC-CCCHH
Confidence 33333 333444789999999999 588887765443 4899999999998 88887
Q ss_pred hHHHHH---hcCCCCcEEeccCCCCCCHHHHHHHHhc----CccCceecccccCCCChHHHH----HhhCCCCCCEEecC
Q 007252 414 GLFYIA---SNCLRIQGLDLYKCSGIGDDGLAALSNG----CKKLKKLNLSYCVNVTDRGME----HIRFIEDLSDLELR 482 (611)
Q Consensus 414 ~~~~l~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~----~~~L~~L~l~~c~~l~~~~~~----~l~~~~~L~~L~l~ 482 (611)
+...++ ..+++|++|+++++ .+++.+...+... .++|++|++++| .+++.+.. .+..+++|++|+++
T Consensus 272 ~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls 349 (461)
T 1z7x_W 272 GCGDLCRVLRAKESLKELSLAGN-ELGDEGARLLCETLLEPGCQLESLWVKSC-SFTAACCSHFSSVLAQNRFLLELQIS 349 (461)
T ss_dssp HHHHHHHHHHHCTTCCEEECTTC-CCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHHHCSSCCEEECC
T ss_pred HHHHHHHHHhhCCCcceEECCCC-CCchHHHHHHHHHhccCCccceeeEcCCC-CCchHHHHHHHHHHhhCCCccEEEcc
Confidence 755543 35899999999997 7887777666543 369999999996 57766543 34578999999999
Q ss_pred CCccccHHHHHHHHhc----CCccCEeeccccCCCCHHHHHHHH---hhCCCCCEEEeccCCCChhHHHHHhc-cc----
Q 007252 483 GLTKITSAGLTALAAG----CKRLADLDLKHCAKIDDSGFWALA---YYSQNLRQINLSYCALSDMALCMVMG-NM---- 550 (611)
Q Consensus 483 ~c~~l~~~~~~~~~~~----~~~L~~L~l~~c~~l~~~~~~~~~---~~~~~L~~L~l~~~~l~~~~~~~~l~-~~---- 550 (611)
+| .+++.+...+... .++|+.|++++| .+++.+...+. ..+++|++|++++|++++.+. ..+. .+
T Consensus 350 ~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~-~~l~~~l~~~~ 426 (461)
T 1z7x_W 350 NN-RLEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGI-LQLVESVRQPG 426 (461)
T ss_dssp SS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHH-HHHHHHHTSTT
T ss_pred CC-ccccccHHHHHHHHcCCCCceEEEECCCC-CCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHH-HHHHHHhccCC
Confidence 95 7888777666543 679999999999 89986655544 347999999999999999887 4444 23
Q ss_pred cccccceeecccCC--CHHHHHHHHhhcCCCccch
Q 007252 551 TRLQDAKLVHLTNC--TREGFELALRSCCMRIKKV 583 (611)
Q Consensus 551 ~~L~~l~l~~~~~~--~~~~~~~~~~~~c~~l~~l 583 (611)
.+|+.|.+.++... ....+..+ ...+|+++.+
T Consensus 427 ~~L~~L~~~~~~~~~~~~~~l~~l-~~~~p~l~i~ 460 (461)
T 1z7x_W 427 CLLEQLVLYDIYWSEEMEDRLQAL-EKDKPSLRVI 460 (461)
T ss_dssp CCCCEEECTTCCCCHHHHHHHHHH-HHHCTTSEEE
T ss_pred cchhheeecccccCHHHHHHHHHH-hccCCCcEee
Confidence 35888888776432 22333333 3447777654
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.96 E-value=7.4e-31 Score=276.79 Aligned_cols=460 Identities=16% Similarity=0.131 Sum_probs=219.2
Q ss_pred CCCcEEeccCCCCCChhhHHHHhhhhhhhhccCCceEEeccccCCChHHHHHHHHhCCCccEEeccCCCCCChhhhHHhh
Q 007252 65 PYIKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREAAALS 144 (611)
Q Consensus 65 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~ 144 (611)
+.+++|+++++. ++..... .....++|++|+++++ .+.......+ ..+++|++|+++++. +.......+.
T Consensus 33 ~~l~~L~Ls~n~-i~~~~~~------~~~~l~~L~~L~Ls~n-~i~~~~~~~~-~~l~~L~~L~Ls~n~-l~~~~~~~~~ 102 (606)
T 3t6q_A 33 NSTECLEFSFNV-LPTIQNT------TFSRLINLTFLDLTRC-QIYWIHEDTF-QSQHRLDTLVLTANP-LIFMAETALS 102 (606)
T ss_dssp TTCCEEECTTCC-CSEECTT------TSTTCTTCSEEECTTC-CCCEECTTTT-TTCTTCCEEECTTCC-CSEECTTTTS
T ss_pred CcCcEEEccCCc-cCcCChh------HhccCccceEEECCCC-ccceeChhhc-cCccccCeeeCCCCc-ccccChhhhc
Confidence 357788888743 2222111 1235567888888877 3333222222 267888888888653 5455556677
Q ss_pred cCCCCcEEeccCCCCCChHHHHHHHhcCCccceeecccccccChHHHHHHHHcCCcCcEEeccCcccChHHHHHhhhcCC
Q 007252 145 FASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATLAK 224 (611)
Q Consensus 145 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 224 (611)
.+++|++|++.++ .++......+ ..+++|++|+++++ .+.......+. .+++|+.|+++++.+.......+..+++
T Consensus 103 ~l~~L~~L~L~~n-~i~~l~~~~~-~~l~~L~~L~L~~n-~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 178 (606)
T 3t6q_A 103 GPKALKHLFFIQT-GISSIDFIPL-HNQKTLESLYLGSN-HISSIKLPKGF-PTEKLKVLDFQNNAIHYLSKEDMSSLQQ 178 (606)
T ss_dssp SCTTCCEEECTTS-CCSCGGGSCC-TTCTTCCEEECCSS-CCCCCCCCTTC-CCTTCCEEECCSSCCCEECHHHHHTTTT
T ss_pred ccccccEeecccc-CcccCCcchh-ccCCcccEEECCCC-cccccCccccc-CCcccCEEEcccCcccccChhhhhhhcc
Confidence 7888888888874 3443221222 34778888888876 34332212222 3678888888888777666666777777
Q ss_pred Cc--EEEecCCCCCChhHHHHHHhcCCCccEEEeccccccChHHHHHHHhcC----------------------------
Q 007252 225 LE--SLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGH---------------------------- 274 (611)
Q Consensus 225 L~--~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~---------------------------- 274 (611)
|+ .|++.++. +....... .. ...|++|++.++... ......+
T Consensus 179 L~~l~L~l~~n~-l~~~~~~~-~~-~~~L~~L~l~~~~~~-----~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~ 250 (606)
T 3t6q_A 179 ATNLSLNLNGND-IAGIEPGA-FD-SAVFQSLNFGGTQNL-----LVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEG 250 (606)
T ss_dssp CCSEEEECTTCC-CCEECTTT-TT-TCEEEEEECTTCSCH-----HHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGG
T ss_pred cceeEEecCCCc-cCccChhH-hh-hccccccccCCchhH-----HHHhhhccccchhheechhhccccccccChhHhch
Confidence 77 67777653 32221111 11 345666665554311 1111111
Q ss_pred ---CCCceeccCCCCCccchhHHHHhhcCCCccEEEccCcccChHHHHHHHHhCCCCcEEeeccCCCCCC----CCCCCC
Q 007252 275 ---SGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTN----TDSCRG 347 (611)
Q Consensus 275 ---~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~ 347 (611)
.+++.|++.++. +.......+..+++|++|+++++.+... ......+++|++|+++++..... +..+++
T Consensus 251 l~~~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~l--p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 326 (606)
T 3t6q_A 251 LCEMSVESINLQKHY--FFNISSNTFHCFSGLQELDLTATHLSEL--PSGLVGLSTLKKLVLSANKFENLCQISASNFPS 326 (606)
T ss_dssp GGGSEEEEEECTTCC--CSSCCTTTTTTCTTCSEEECTTSCCSCC--CSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTT
T ss_pred hhcCceeEEEeecCc--cCccCHHHhccccCCCEEeccCCccCCC--ChhhcccccCCEEECccCCcCcCchhhhhccCc
Confidence 134444444442 2222223344455555555555544311 11112345555555555432111 444555
Q ss_pred CcEEecCCCccCChhHHHHHHhccCCCcEEecCCCCCCChhh--hhhhccCCCceEEEecCCCCCChHhHHHHHhcCCCC
Q 007252 348 LVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKG--LEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRI 425 (611)
Q Consensus 348 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 425 (611)
|+.|+++++........ .....+++|++|++++ +.+.... ...+..+++|++|+++++ .+.......+. .+++|
T Consensus 327 L~~L~l~~n~~~~~~~~-~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~-~l~~L 402 (606)
T 3t6q_A 327 LTHLSIKGNTKRLELGT-GCLENLENLRELDLSH-DDIETSDCCNLQLRNLSHLQSLNLSYN-EPLSLKTEAFK-ECPQL 402 (606)
T ss_dssp CSEEECCSCSSCCBCCS-STTTTCTTCCEEECCS-SCCCEEEESTTTTTTCTTCCEEECCSC-SCEEECTTTTT-TCTTC
T ss_pred CCEEECCCCCcccccch-hhhhccCcCCEEECCC-CccccccCcchhcccCCCCCEEECCCC-cCCcCCHHHhc-CCccC
Confidence 55555555431111000 0111345555555555 3443332 233445555555555554 22222111111 34555
Q ss_pred cEEeccCCCCCCHHHHHHHHhcCccCceecccccCCCChHHHHHhhCCCCCCEEecCCCccccHHHH--HHHHhcCCccC
Q 007252 426 QGLDLYKCSGIGDDGLAALSNGCKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGL--TALAAGCKRLA 503 (611)
Q Consensus 426 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~c~~l~~~~~--~~~~~~~~~L~ 503 (611)
++|+++++ .++..........+++|+.|++++| .++......+..+++|++|++++| .+++..+ ......+++|+
T Consensus 403 ~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~l~~L~ 479 (606)
T 3t6q_A 403 ELLDLAFT-RLKVKDAQSPFQNLHLLKVLNLSHS-LLDISSEQLFDGLPALQHLNLQGN-HFPKGNIQKTNSLQTLGRLE 479 (606)
T ss_dssp SEEECTTC-CEECCTTCCTTTTCTTCCEEECTTC-CCBTTCTTTTTTCTTCCEEECTTC-BCGGGEECSSCGGGGCTTCC
T ss_pred CeEECCCC-cCCCcccchhhhCcccCCEEECCCC-ccCCcCHHHHhCCCCCCEEECCCC-CCCccccccchhhccCCCcc
Confidence 55555554 2211111111233455555555553 333333334445555555555553 2322100 01123355555
Q ss_pred EeeccccCCCCHHHHHHHHhhCCCCCEEEeccCCCChhHHHHHhccccccccceeecc
Q 007252 504 DLDLKHCAKIDDSGFWALAYYSQNLRQINLSYCALSDMALCMVMGNMTRLQDAKLVHL 561 (611)
Q Consensus 504 ~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~l~~~~~L~~l~l~~~ 561 (611)
.|++++| .++......+ ..+++|++|++++|.++.... ..+..+++| .|++.++
T Consensus 480 ~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~-~~l~~l~~L-~L~L~~N 533 (606)
T 3t6q_A 480 ILVLSFC-DLSSIDQHAF-TSLKMMNHVDLSHNRLTSSSI-EALSHLKGI-YLNLASN 533 (606)
T ss_dssp EEECTTS-CCCEECTTTT-TTCTTCCEEECCSSCCCGGGG-GGGTTCCSC-EEECCSS
T ss_pred EEECCCC-ccCccChhhh-ccccCCCEEECCCCccCcCCh-hHhCccccc-EEECcCC
Confidence 5555555 4433221111 223555555565555555544 445555555 5555444
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.95 E-value=2.3e-29 Score=265.41 Aligned_cols=470 Identities=17% Similarity=0.148 Sum_probs=318.4
Q ss_pred HHHhcCCCCcEEeccCCCCCChhhHHHHhhhhhhhhccCCceEEeccccCCChHHHHHHHHhCCCccEEeccCCCCCChh
Q 007252 59 ILLDKYPYIKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDR 138 (611)
Q Consensus 59 ~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~ 138 (611)
..+..+++|++|+++++.- ...... ......+|++|+++++ .+.......+ ..+++|++|+++++. +...
T Consensus 51 ~~~~~l~~L~~L~Ls~n~i-~~~~~~------~~~~l~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~L~~n~-i~~l 120 (606)
T 3t6q_A 51 TTFSRLINLTFLDLTRCQI-YWIHED------TFQSQHRLDTLVLTAN-PLIFMAETAL-SGPKALKHLFFIQTG-ISSI 120 (606)
T ss_dssp TTSTTCTTCSEEECTTCCC-CEECTT------TTTTCTTCCEEECTTC-CCSEECTTTT-SSCTTCCEEECTTSC-CSCG
T ss_pred hHhccCccceEEECCCCcc-ceeChh------hccCccccCeeeCCCC-cccccChhhh-cccccccEeeccccC-cccC
Confidence 4567789999999998642 221111 1245789999999998 3333222222 378999999999764 5555
Q ss_pred hhHHhhcCCCCcEEeccCCCCCChHHHHHHHhcCCccceeecccccccChHHHHHHHHcCCcCc--EEeccCcccChHHH
Q 007252 139 EAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDLK--SLDVSYLKLTNDSF 216 (611)
Q Consensus 139 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~--~L~l~~~~~~~~~~ 216 (611)
....+..+++|++|++.++ .+.......+.. +++|++|+++++ .++..... ....+++|+ .|+++++.+.....
T Consensus 121 ~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~-l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~l~L~l~~n~l~~~~~ 196 (606)
T 3t6q_A 121 DFIPLHNQKTLESLYLGSN-HISSIKLPKGFP-TEKLKVLDFQNN-AIHYLSKE-DMSSLQQATNLSLNLNGNDIAGIEP 196 (606)
T ss_dssp GGSCCTTCTTCCEEECCSS-CCCCCCCCTTCC-CTTCCEEECCSS-CCCEECHH-HHHTTTTCCSEEEECTTCCCCEECT
T ss_pred CcchhccCCcccEEECCCC-cccccCcccccC-CcccCEEEcccC-cccccChh-hhhhhcccceeEEecCCCccCccCh
Confidence 5666888999999999985 444322223333 789999999987 55433322 234688888 88999886655433
Q ss_pred HHhhhcCCCcEEEecCCCCCChhHHHHHH-------------------------hcC--CCccEEEeccccccChHHHHH
Q 007252 217 CSIATLAKLESLVMVGCPCVDDTGLRFLE-------------------------SGC--PLLKTIFVSRCKFVSSTGLIS 269 (611)
Q Consensus 217 ~~l~~~~~L~~L~l~~~~~~~~~~~~~l~-------------------------~~~--~~L~~L~l~~~~~~~~~~l~~ 269 (611)
.. ....+|++|++.++..+. ..+..+. ..+ .+|+.|+++++..... ...
T Consensus 197 ~~-~~~~~L~~L~l~~~~~~~-~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~--~~~ 272 (606)
T 3t6q_A 197 GA-FDSAVFQSLNFGGTQNLL-VIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNI--SSN 272 (606)
T ss_dssp TT-TTTCEEEEEECTTCSCHH-HHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSC--CTT
T ss_pred hH-hhhccccccccCCchhHH-HHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCcc--CHH
Confidence 22 234578888887754111 0111100 001 1677788877533221 122
Q ss_pred HHhcCCCCceeccCCCCCccchhHHHHhhcCCCccEEEccCcccChHHHHHHHHhCCCCcEEeeccCCCCCC-----CCC
Q 007252 270 VIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTN-----TDS 344 (611)
Q Consensus 270 ~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~-----~~~ 344 (611)
.+..+++|++|+++++.. . .....+..+++|++|+++++.+.......+ ..+++|++|+++++..... +..
T Consensus 273 ~~~~l~~L~~L~l~~n~l--~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~~~~~ 348 (606)
T 3t6q_A 273 TFHCFSGLQELDLTATHL--S-ELPSGLVGLSTLKKLVLSANKFENLCQISA-SNFPSLTHLSIKGNTKRLELGTGCLEN 348 (606)
T ss_dssp TTTTCTTCSEEECTTSCC--S-CCCSSCCSCTTCCEEECTTCCCSBGGGGCG-GGCTTCSEEECCSCSSCCBCCSSTTTT
T ss_pred HhccccCCCEEeccCCcc--C-CCChhhcccccCCEEECccCCcCcCchhhh-hccCcCCEEECCCCCcccccchhhhhc
Confidence 356789999999998854 2 334457788999999999998775433222 3789999999999854322 778
Q ss_pred CCCCcEEecCCCccCChhH-HHHHHhccCCCcEEecCCCCCCChhhhhhhccCCCceEEEecCCCCCChHhHHHHHhcCC
Q 007252 345 CRGLVCLKIESCNMITEKG-LYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCL 423 (611)
Q Consensus 345 ~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 423 (611)
+++|+.|+++++. +.... .......+++|++|++++ +.+.......+..+++|+.|+++++ .++..........++
T Consensus 349 l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~ 425 (606)
T 3t6q_A 349 LENLRELDLSHDD-IETSDCCNLQLRNLSHLQSLNLSY-NEPLSLKTEAFKECPQLELLDLAFT-RLKVKDAQSPFQNLH 425 (606)
T ss_dssp CTTCCEEECCSSC-CCEEEESTTTTTTCTTCCEEECCS-CSCEEECTTTTTTCTTCSEEECTTC-CEECCTTCCTTTTCT
T ss_pred cCcCCEEECCCCc-cccccCcchhcccCCCCCEEECCC-CcCCcCCHHHhcCCccCCeEECCCC-cCCCcccchhhhCcc
Confidence 8999999999865 33221 111233789999999999 6777666677888999999999987 443322222223689
Q ss_pred CCcEEeccCCCCCCHHHHHHHHhcCccCceecccccCCCChHHH---HHhhCCCCCCEEecCCCccccHHHHHHHHhcCC
Q 007252 424 RIQGLDLYKCSGIGDDGLAALSNGCKKLKKLNLSYCVNVTDRGM---EHIRFIEDLSDLELRGLTKITSAGLTALAAGCK 500 (611)
Q Consensus 424 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~---~~l~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~ 500 (611)
+|++|++++| .++.... .....+++|++|+++++ .+++..+ ..+..+++|+.|++++| .++..... ....++
T Consensus 426 ~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~-~~~~l~ 500 (606)
T 3t6q_A 426 LLKVLNLSHS-LLDISSE-QLFDGLPALQHLNLQGN-HFPKGNIQKTNSLQTLGRLEILVLSFC-DLSSIDQH-AFTSLK 500 (606)
T ss_dssp TCCEEECTTC-CCBTTCT-TTTTTCTTCCEEECTTC-BCGGGEECSSCGGGGCTTCCEEECTTS-CCCEECTT-TTTTCT
T ss_pred cCCEEECCCC-ccCCcCH-HHHhCCCCCCEEECCCC-CCCccccccchhhccCCCccEEECCCC-ccCccChh-hhcccc
Confidence 9999999997 4432222 22345899999999995 4554222 45778999999999996 45433222 234689
Q ss_pred ccCEeeccccCCCCHHHHHHHHhhCCCCCEEEeccCCCChhHHHHHhccccccccceeeccc
Q 007252 501 RLADLDLKHCAKIDDSGFWALAYYSQNLRQINLSYCALSDMALCMVMGNMTRLQDAKLVHLT 562 (611)
Q Consensus 501 ~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~l~~~~~L~~l~l~~~~ 562 (611)
+|+.|++++| .++......+. .+++| +|++++|.++.... ..+..+++|+.+++.+++
T Consensus 501 ~L~~L~Ls~N-~l~~~~~~~l~-~l~~L-~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 501 MMNHVDLSHN-RLTSSSIEALS-HLKGI-YLNLASNHISIILP-SLLPILSQQRTINLRQNP 558 (606)
T ss_dssp TCCEEECCSS-CCCGGGGGGGT-TCCSC-EEECCSSCCCCCCG-GGHHHHHTSSEEECTTCC
T ss_pred CCCEEECCCC-ccCcCChhHhC-ccccc-EEECcCCcccccCH-hhcccCCCCCEEeCCCCC
Confidence 9999999999 88765544443 45888 99999999887766 667889999999998875
No 9
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.95 E-value=1.8e-30 Score=279.71 Aligned_cols=466 Identities=18% Similarity=0.134 Sum_probs=260.6
Q ss_pred HHHHhcCCCCcEEeccCCCCCChhhHHHHhhhhhhhhccCCceEEeccccCCChHHHH--HHHHhCCCccEEeccCCCCC
Q 007252 58 FILLDKYPYIKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLE--MLARACPLLESVDLSYCCGF 135 (611)
Q Consensus 58 ~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~L~l~~~~~~~~~~~~--~l~~~~~~L~~L~l~~~~~~ 135 (611)
+..+...++|+.++++..... . ++. ......+|++|+++++. +...... .+ ..+++|++|+++++...
T Consensus 70 ~~~l~~L~~L~~l~~~~~~~~-~-----l~~--~~~~l~~L~~L~Ls~n~-l~~~~~~~~~l-~~l~~L~~L~Ls~n~l~ 139 (768)
T 3rgz_A 70 SSSLLSLTGLESLFLSNSHIN-G-----SVS--GFKCSASLTSLDLSRNS-LSGPVTTLTSL-GSCSGLKFLNVSSNTLD 139 (768)
T ss_dssp HHHTTTCTTCCEEECTTSCEE-E-----CCC--CCCCCTTCCEEECCSSE-EEEEGGGGGGG-GGCTTCCEEECCSSEEE
T ss_pred ChhHhccCcccccCCcCCCcC-C-----Cch--hhccCCCCCEEECCCCc-CCCcCCChHHH-hCCCCCCEEECcCCccC
Confidence 344445566666666543211 1 000 12345778888888773 3221111 23 37788888888866422
Q ss_pred ChhhhHHhhcCCCCcEEeccCCCCCChHHHHH--HHhcCCccceeecccccccChHHHHHHHHcCCcCcEEeccCcccCh
Q 007252 136 GDREAAALSFASGLKEVKLDKCLNVTDVGLAK--IAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTN 213 (611)
Q Consensus 136 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~ 213 (611)
.......+.++++|++|+++++ .++...... ....+++|++|+++++.-...... ..+++|++|++++|.+..
T Consensus 140 ~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~l~~L~~L~Ls~n~l~~ 214 (768)
T 3rgz_A 140 FPGKVSGGLKLNSLEVLDLSAN-SISGANVVGWVLSDGCGELKHLAISGNKISGDVDV----SRCVNLEFLDVSSNNFST 214 (768)
T ss_dssp CCSSCCSCCCCTTCSEEECCSS-CCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC----TTCTTCCEEECCSSCCCS
T ss_pred CcCCHHHhccCCCCCEEECCCC-ccCCcCChhhhhhccCCCCCEEECCCCcccccCCc----ccCCcCCEEECcCCcCCC
Confidence 2222222356788888888874 444332222 134578888888887632111111 457788888888876554
Q ss_pred HHHHHhhhcCCCcEEEecCCCCCChhHHHHHHhcCCCccEEEeccccccChHHHHHHHhcCCCCceeccCCCCCccchhH
Q 007252 214 DSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTL 293 (611)
Q Consensus 214 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~ 293 (611)
.... +..+++|++|+++++. ++......+.. +++|++|+++++....... . ..+++|++|++.++.. ....
T Consensus 215 ~~~~-l~~l~~L~~L~Ls~n~-l~~~~~~~l~~-l~~L~~L~Ls~n~l~~~~~--~--~~l~~L~~L~L~~n~l--~~~i 285 (768)
T 3rgz_A 215 GIPF-LGDCSALQHLDISGNK-LSGDFSRAIST-CTELKLLNISSNQFVGPIP--P--LPLKSLQYLSLAENKF--TGEI 285 (768)
T ss_dssp CCCB-CTTCCSCCEEECCSSC-CCSCHHHHTTT-CSSCCEEECCSSCCEESCC--C--CCCTTCCEEECCSSEE--EESC
T ss_pred CCcc-cccCCCCCEEECcCCc-CCCcccHHHhc-CCCCCEEECCCCcccCccC--c--cccCCCCEEECcCCcc--CCcc
Confidence 3222 6777888888888754 54444444444 7888888887764321111 0 1567778887777642 2222
Q ss_pred HHHhhc-CCCccEEEccCcccChHHHHHHHHhCCCCcEEeeccCCCC---CC--CCCCCCCcEEecCCCccCChhHHHHH
Q 007252 294 LHHMRD-LKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGV---TN--TDSCRGLVCLKIESCNMITEKGLYQL 367 (611)
Q Consensus 294 ~~~l~~-~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~---~~--~~~~~~L~~L~l~~~~~~~~~~~~~~ 367 (611)
...+.. +++|++|+++++.+....... ...+++|++|+++++... .. +..+++|+.|+++++.. .......+
T Consensus 286 p~~~~~~~~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l-~~~~p~~l 363 (768)
T 3rgz_A 286 PDFLSGACDTLTGLDLSGNHFYGAVPPF-FGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF-SGELPESL 363 (768)
T ss_dssp CCCSCTTCTTCSEEECCSSEEEECCCGG-GGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEE-EECCCTTH
T ss_pred CHHHHhhcCcCCEEECcCCcCCCccchH-HhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCcc-CccccHHH
Confidence 333333 377788887777654321111 225677777777776422 11 56677777777777642 11111112
Q ss_pred HhccC-CCcEEecCCCCCCChhhhhhhcc--CCCceEEEecCCCCCChHhHHHHHhcCCCCcEEeccCCCCCCHHHHHHH
Q 007252 368 GSFCL-RLEEIDLTDCNGVNDKGLEYLSR--CSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAAL 444 (611)
Q Consensus 368 ~~~~~-~L~~L~l~~~~~~~~~~~~~l~~--~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~ 444 (611)
. .++ +|+.|++++ +.+.......+.. +++|+.|++++| .+++.....+ ..+++|++|++++| .++... ...
T Consensus 364 ~-~l~~~L~~L~Ls~-N~l~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~p~~l-~~l~~L~~L~Ls~N-~l~~~~-p~~ 437 (768)
T 3rgz_A 364 T-NLSASLLTLDLSS-NNFSGPILPNLCQNPKNTLQELYLQNN-GFTGKIPPTL-SNCSELVSLHLSFN-YLSGTI-PSS 437 (768)
T ss_dssp H-HHTTTCSEEECCS-SEEEEECCTTTTCSTTCCCCEEECCSS-EEEEECCGGG-GGCTTCCEEECCSS-EEESCC-CGG
T ss_pred H-hhhcCCcEEEccC-CCcCCCcChhhhhcccCCccEEECCCC-ccccccCHHH-hcCCCCCEEECcCC-cccCcc-cHH
Confidence 2 233 777777777 4554444444443 667777777776 3332211222 25677777777775 222111 111
Q ss_pred HhcCccCceecccccCCCChHHHHHhhCCCCCCEEecCCCccccHHHHHHHHhcCCccCEeeccccCCCCHHHHHHHHhh
Q 007252 445 SNGCKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYY 524 (611)
Q Consensus 445 ~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~ 524 (611)
...+++|+.|++++| .++......+..+++|++|++++| .++.... .....+++|+.|++++| .++...... ...
T Consensus 438 l~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~p-~~l~~l~~L~~L~L~~N-~l~~~~p~~-~~~ 512 (768)
T 3rgz_A 438 LGSLSKLRDLKLWLN-MLEGEIPQELMYVKTLETLILDFN-DLTGEIP-SGLSNCTNLNWISLSNN-RLTGEIPKW-IGR 512 (768)
T ss_dssp GGGCTTCCEEECCSS-CCCSCCCGGGGGCTTCCEEECCSS-CCCSCCC-GGGGGCTTCCEEECCSS-CCCSCCCGG-GGG
T ss_pred HhcCCCCCEEECCCC-cccCcCCHHHcCCCCceEEEecCC-cccCcCC-HHHhcCCCCCEEEccCC-ccCCcCChH-Hhc
Confidence 234677777777774 455444455667777888887774 3432111 12345777888888777 554321112 233
Q ss_pred CCCCCEEEeccCCCChhHHHHHhccccccccceeecc
Q 007252 525 SQNLRQINLSYCALSDMALCMVMGNMTRLQDAKLVHL 561 (611)
Q Consensus 525 ~~~L~~L~l~~~~l~~~~~~~~l~~~~~L~~l~l~~~ 561 (611)
+++|++|++++|.++.... ..+..+++|+.|++.++
T Consensus 513 l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N 548 (768)
T 3rgz_A 513 LENLAILKLSNNSFSGNIP-AELGDCRSLIWLDLNTN 548 (768)
T ss_dssp CTTCCEEECCSSCCEEECC-GGGGGCTTCCEEECCSS
T ss_pred CCCCCEEECCCCcccCcCC-HHHcCCCCCCEEECCCC
Confidence 5777888888777664444 55667777777777665
No 10
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.95 E-value=3.7e-30 Score=277.22 Aligned_cols=256 Identities=18% Similarity=0.119 Sum_probs=140.3
Q ss_pred HHhcCCCCcEEeccCCCCCChhhHHHHhhhhhhhhccCCceEEeccccCCChHHHHH--HHHhCCCccEEeccCCCCCCh
Q 007252 60 LLDKYPYIKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEM--LARACPLLESVDLSYCCGFGD 137 (611)
Q Consensus 60 ~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~--l~~~~~~L~~L~l~~~~~~~~ 137 (611)
.+..+++|++|+++++.-...... .+ ....++|++|+++++ .+....... ....+++|++|+++++.....
T Consensus 121 ~l~~l~~L~~L~Ls~n~l~~~~~~-~~-----~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 193 (768)
T 3rgz_A 121 SLGSCSGLKFLNVSSNTLDFPGKV-SG-----GLKLNSLEVLDLSAN-SISGANVVGWVLSDGCGELKHLAISGNKISGD 193 (768)
T ss_dssp GGGGCTTCCEEECCSSEEECCSSC-CS-----CCCCTTCSEEECCSS-CCEEETHHHHHHTTCCTTCCEEECCSSEEESC
T ss_pred HHhCCCCCCEEECcCCccCCcCCH-HH-----hccCCCCCEEECCCC-ccCCcCChhhhhhccCCCCCEEECCCCccccc
Confidence 567889999999998632111100 00 134678999999888 343333222 244788888888886642221
Q ss_pred hhhHHhhcCCCCcEEeccCCCCCChHHHHHHHhcCCccceeecccccccChHHHHHHHHcCCcCcEEeccCcccChHHHH
Q 007252 138 REAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFC 217 (611)
Q Consensus 138 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~ 217 (611)
..+..+++|++|++.++. +.... .. ...+++|++|+++++ .++... ......+++|++|++++|.+......
T Consensus 194 ---~~~~~l~~L~~L~Ls~n~-l~~~~-~~-l~~l~~L~~L~Ls~n-~l~~~~-~~~l~~l~~L~~L~Ls~n~l~~~~~~ 265 (768)
T 3rgz_A 194 ---VDVSRCVNLEFLDVSSNN-FSTGI-PF-LGDCSALQHLDISGN-KLSGDF-SRAISTCTELKLLNISSNQFVGPIPP 265 (768)
T ss_dssp ---CBCTTCTTCCEEECCSSC-CCSCC-CB-CTTCCSCCEEECCSS-CCCSCH-HHHTTTCSSCCEEECCSSCCEESCCC
T ss_pred ---CCcccCCcCCEEECcCCc-CCCCC-cc-cccCCCCCEEECcCC-cCCCcc-cHHHhcCCCCCEEECCCCcccCccCc
Confidence 122567888888888753 32211 11 234778888888876 444322 22335677888888887754322111
Q ss_pred HhhhcCCCcEEEecCCCCCChhHHHHHHhcCCCccEEEeccccccChHHHHHHHhcCCCCceeccCCCCCccchhHHHHh
Q 007252 218 SIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHM 297 (611)
Q Consensus 218 ~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l 297 (611)
..+++|++|++.++. ++......+...+++|++|+++++.... .++..+..+++|++|++.++.. ........+
T Consensus 266 --~~l~~L~~L~L~~n~-l~~~ip~~~~~~~~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~L~~n~l-~~~ip~~~l 339 (768)
T 3rgz_A 266 --LPLKSLQYLSLAENK-FTGEIPDFLSGACDTLTGLDLSGNHFYG--AVPPFFGSCSLLESLALSSNNF-SGELPMDTL 339 (768)
T ss_dssp --CCCTTCCEEECCSSE-EEESCCCCSCTTCTTCSEEECCSSEEEE--CCCGGGGGCTTCCEEECCSSEE-EEECCHHHH
T ss_pred --cccCCCCEEECcCCc-cCCccCHHHHhhcCcCCEEECcCCcCCC--ccchHHhcCCCccEEECCCCcc-cCcCCHHHH
Confidence 156777777777653 2221122223334777777777653221 1122345567777777776642 112223346
Q ss_pred hcCCCccEEEccCcccChHHHHHHHHhCCCCcEEeeccC
Q 007252 298 RDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKC 336 (611)
Q Consensus 298 ~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~ 336 (611)
..+++|+.|+++++.+.......+....++|++|+++++
T Consensus 340 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N 378 (768)
T 3rgz_A 340 LKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSN 378 (768)
T ss_dssp TTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSS
T ss_pred hcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCC
Confidence 667777777777765542211112212235666666554
No 11
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.95 E-value=4.1e-29 Score=267.12 Aligned_cols=259 Identities=16% Similarity=0.103 Sum_probs=120.6
Q ss_pred hCCCCcEEeeccCCCCCC----CCCCCCCcEEecCCCcc----CChhHHHHHHhccCCCcEEecCCCCCCChhhhhhhcc
Q 007252 324 NCKSLVEIGLSKCLGVTN----TDSCRGLVCLKIESCNM----ITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSR 395 (611)
Q Consensus 324 ~~~~L~~L~l~~~~~~~~----~~~~~~L~~L~l~~~~~----~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~ 395 (611)
.+++|++|+++++..... +..+++|++|+++++.. +....+..+ ..++|+.|++++ +.++......+..
T Consensus 327 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~--~~~~L~~L~L~~-n~l~~~~~~~~~~ 403 (680)
T 1ziw_A 327 WLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSL--AHSPLHILNLTK-NKISKIESDAFSW 403 (680)
T ss_dssp TCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGG--TTSCCCEEECTT-SCCCEECTTTTTT
T ss_pred cCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhccc--ccCcCceEECCC-CCCCeEChhhhhC
Confidence 345566666555431111 45556666666665431 111111000 124566666665 4555444455566
Q ss_pred CCCceEEEecCCCCCChHhHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhcCccCceecccccCCCCh--HHHHHhhCC
Q 007252 396 CSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKKLKKLNLSYCVNVTD--RGMEHIRFI 473 (611)
Q Consensus 396 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~--~~~~~l~~~ 473 (611)
+++|+.|+++++ .++..........+++|++|++++|. ++...... ...+++|+.|+++++. ++. .....+..+
T Consensus 404 l~~L~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~-~~~~~~L~~L~l~~n~-l~~~~~~p~~~~~l 479 (680)
T 1ziw_A 404 LGHLEVLDLGLN-EIGQELTGQEWRGLENIFEIYLSYNK-YLQLTRNS-FALVPSLQRLMLRRVA-LKNVDSSPSPFQPL 479 (680)
T ss_dssp CTTCCEEECCSS-CCEEECCSGGGTTCTTCCEEECCSCS-EEECCTTT-TTTCTTCCEEECTTSC-CBCTTCSSCTTTTC
T ss_pred CCCCCEEeCCCC-cCccccCcccccCcccccEEecCCCC-cceeChhh-hhcCcccccchhcccc-ccccccCCcccccC
Confidence 777777777766 33211100111246667777776653 21111111 1235566666665532 221 111234456
Q ss_pred CCCCEEecCCCccccHHHHHHHHhcCCccCEeeccccCCCCHHHHHH-------HHhhCCCCCEEEeccCCCChhHHHHH
Q 007252 474 EDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWA-------LAYYSQNLRQINLSYCALSDMALCMV 546 (611)
Q Consensus 474 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~-------~~~~~~~L~~L~l~~~~l~~~~~~~~ 546 (611)
++|+.|+++++ .++.... ....++++|+.|++++| .++...... ....+++|+.|++++|.++..+. .+
T Consensus 480 ~~L~~L~Ls~N-~l~~i~~-~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~-~~ 555 (680)
T 1ziw_A 480 RNLTILDLSNN-NIANIND-DMLEGLEKLEILDLQHN-NLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPV-EV 555 (680)
T ss_dssp TTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-CCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCT-TT
T ss_pred CCCCEEECCCC-CCCcCCh-hhhccccccCEEeCCCC-CccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCH-HH
Confidence 66666666663 3432111 11234566666666666 443321000 02234666666666666654443 44
Q ss_pred hccccccccceeecccCCCHHHHHHHHhhcCCCccchhhhhhhhhcCChH
Q 007252 547 MGNMTRLQDAKLVHLTNCTREGFELALRSCCMRIKKVKLLAPIRFLLSSE 596 (611)
Q Consensus 547 l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~c~~l~~l~l~~~~~~~~p~~ 596 (611)
+..+++|+.|++.++ +++. +.......+++|+.|++..+-...+|+.
T Consensus 556 ~~~l~~L~~L~Ls~N-~l~~--l~~~~~~~l~~L~~L~L~~N~l~~~~~~ 602 (680)
T 1ziw_A 556 FKDLFELKIIDLGLN-NLNT--LPASVFNNQVSLKSLNLQKNLITSVEKK 602 (680)
T ss_dssp TTTCTTCCEEECCSS-CCCC--CCTTTTTTCTTCCEEECTTSCCCBCCHH
T ss_pred cccccCcceeECCCC-CCCc--CCHhHhCCCCCCCEEECCCCcCCccChh
Confidence 556666666666444 2321 1111223356666666654444444444
No 12
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.94 E-value=3.9e-26 Score=221.95 Aligned_cols=289 Identities=20% Similarity=0.262 Sum_probs=200.8
Q ss_pred CCcccCCcHHHHHHHHhhhCCCCCchhhHhhchhHHhhhcccccccccchHHHHHHHHhcCCCCcEEeccCCCCCChhhH
Q 007252 4 SSALDVLTEDLLVRVREKIGDELDSKTWRLVCKEFSRVDSVTRTTLRVLRVEFLFILLDKYPYIKTLDLSVCPRVNDGTV 83 (611)
Q Consensus 4 ~~~~~~LP~e~l~~If~~L~~~~~~~~~~~vc~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~ 83 (611)
...|++||+|++.+||+||+ .+|+.+++.|||+|++++... ..++.++++++. +.+...
T Consensus 6 ~~~~~~LP~eil~~If~~L~-~~d~~~~~~vc~~W~~~~~~~-------------------~~~~~l~l~~~~-~~~~~~ 64 (336)
T 2ast_B 6 GVSWDSLPDELLLGIFSCLC-LPELLKVSGVCKRWYRLASDE-------------------SLWQTLDLTGKN-LHPDVT 64 (336)
T ss_dssp -CCSSSSCHHHHHHHHTTSC-HHHHHHTTSSCHHHHHHHTCS-------------------TTSSEEECTTCB-CCHHHH
T ss_pred cCChhhCCHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHhcCc-------------------hhheeecccccc-CCHHHH
Confidence 45789999999999999999 999999999999999976432 225566776532 222222
Q ss_pred HHHhhhhhhhhccCCceEEeccccCCChHHHHHHHHhCCCccEEeccCCCCCChh-hhHHhhcCCCCcEEeccCCCCCCh
Q 007252 84 SFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDR-EAAALSFASGLKEVKLDKCLNVTD 162 (611)
Q Consensus 84 ~~l~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~ 162 (611)
. ....++++.++++++. +...... + ..+++|++|+++++. +.+. ....+..+++|++|++.+| .+++
T Consensus 65 ~-------~~~~~~l~~L~l~~n~-l~~~~~~-~-~~~~~L~~L~L~~~~-l~~~~~~~~~~~~~~L~~L~L~~~-~l~~ 132 (336)
T 2ast_B 65 G-------RLLSQGVIAFRCPRSF-MDQPLAE-H-FSPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQNLSLEGL-RLSD 132 (336)
T ss_dssp H-------HHHHTTCSEEECTTCE-ECSCCCS-C-CCCBCCCEEECTTCE-ECHHHHHHHHTTBCCCSEEECTTC-BCCH
T ss_pred H-------hhhhccceEEEcCCcc-ccccchh-h-ccCCCCCEEEccCCC-cCHHHHHHHHhhCCCCCEEeCcCc-ccCH
Confidence 1 2233677888877763 2111111 1 256788888888764 4444 4445667788888888875 5666
Q ss_pred HHHHHHHhcCCccceeecccccccChHHHHHHHHcCCcCcEEeccCc-ccChHHHH-HhhhcC-CCcEEEecCCC-CCCh
Q 007252 163 VGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYL-KLTNDSFC-SIATLA-KLESLVMVGCP-CVDD 238 (611)
Q Consensus 163 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~-~~~~~~~~-~l~~~~-~L~~L~l~~~~-~~~~ 238 (611)
.....+.. +++|++|++++|..+++.++..+...+++|++|++++| .++...+. .+..++ +|++|++++|. .+++
T Consensus 133 ~~~~~l~~-~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~ 211 (336)
T 2ast_B 133 PIVNTLAK-NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQK 211 (336)
T ss_dssp HHHHHHTT-CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCH
T ss_pred HHHHHHhc-CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCH
Confidence 55555554 78888888888766776667776777888888888888 77766433 366788 88888888775 4666
Q ss_pred hHHHHHHhcCCCccEEEeccccccChHHHHHHHhcCCCCceeccCCCCCccchhHHHHhhcCCCccEEEccCcccChHHH
Q 007252 239 TGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCF 318 (611)
Q Consensus 239 ~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l 318 (611)
..+......+++|++|++++|..++...+.. +..+++|++|++.+|.. +.+.....+..+++|+.|+++++ +++..+
T Consensus 212 ~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~-l~~l~~L~~L~l~~~~~-~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~ 288 (336)
T 2ast_B 212 SDLSTLVRRCPNLVHLDLSDSVMLKNDCFQE-FFQLNYLQHLSLSRCYD-IIPETLLELGEIPTLKTLQVFGI-VPDGTL 288 (336)
T ss_dssp HHHHHHHHHCTTCSEEECTTCTTCCGGGGGG-GGGCTTCCEEECTTCTT-CCGGGGGGGGGCTTCCEEECTTS-SCTTCH
T ss_pred HHHHHHHhhCCCCCEEeCCCCCcCCHHHHHH-HhCCCCCCEeeCCCCCC-CCHHHHHHHhcCCCCCEEeccCc-cCHHHH
Confidence 6666666668888888888876555544443 35678888888888864 56666667778888999999888 777777
Q ss_pred HHHHHhCCCCc
Q 007252 319 QTISFNCKSLV 329 (611)
Q Consensus 319 ~~~~~~~~~L~ 329 (611)
..+...++.|+
T Consensus 289 ~~l~~~l~~L~ 299 (336)
T 2ast_B 289 QLLKEALPHLQ 299 (336)
T ss_dssp HHHHHHSTTSE
T ss_pred HHHHhhCcceE
Confidence 76665566555
No 13
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.94 E-value=7.2e-29 Score=265.19 Aligned_cols=478 Identities=15% Similarity=0.111 Sum_probs=226.3
Q ss_pred hccCCceEEeccccCCChHHHHHHHHhCCCccEEeccCCCCCChhhhHHhhcCCCCcEEeccCCCCCChHHHHHHHhcCC
Q 007252 94 WTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCV 173 (611)
Q Consensus 94 ~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 173 (611)
..++|++|+++++ .+.......+ ..+++|++|+++++ .+...+...+..+++|++|++.++ .+.......+ ..++
T Consensus 47 ~l~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~-~~l~ 121 (680)
T 1ziw_A 47 RYSQLTSLDVGFN-TISKLEPELC-QKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELHLMSN-SIQKIKNNPF-VKQK 121 (680)
T ss_dssp GGTTCSEEECCSS-CCCCCCTTHH-HHCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCCCCSCTT-TTCT
T ss_pred CCCcCcEEECCCC-ccCccCHHHH-hcccCcCEEECCCC-ccCccChhhhccCCCCCEEECCCC-ccCccChhHc-cccC
Confidence 3456666666665 2222221222 25666666666654 244444445566666666666653 2322111112 2256
Q ss_pred ccceeecccccccChHHHHHHHHcCCcCcEEeccCcccChHHHHHhh--hcCCCcEEEecCCCCCChhHHHHHHhcCCCc
Q 007252 174 NLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIA--TLAKLESLVMVGCPCVDDTGLRFLESGCPLL 251 (611)
Q Consensus 174 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~--~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 251 (611)
+|++|+++++ .+....... ...+++|++|+++++.+.......+. .+++|++|+++++. ++......+.. +++|
T Consensus 122 ~L~~L~Ls~n-~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~-l~~L 197 (680)
T 1ziw_A 122 NLITLDLSHN-GLSSTKLGT-QVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ-IKEFSPGCFHA-IGRL 197 (680)
T ss_dssp TCCEEECCSS-CCSCCCCCS-SSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCC-CCCBCTTGGGG-SSEE
T ss_pred CCCEEECCCC-cccccCchh-hcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCc-ccccChhhhhh-hhhh
Confidence 6666666665 222211111 12456666666666655443333332 34566666666542 22221111222 4444
Q ss_pred cEEEeccccccChHHHHHHHh--cCCC--------------------------CceeccCCCCCccchhHHHHhhcCCCc
Q 007252 252 KTIFVSRCKFVSSTGLISVIR--GHSG--------------------------LLQLDAGHCFSELSTTLLHHMRDLKNL 303 (611)
Q Consensus 252 ~~L~l~~~~~~~~~~l~~~~~--~~~~--------------------------L~~L~l~~~~~~~~~~~~~~l~~~~~L 303 (611)
+.+++.++.. .......+.. ..++ |++|+++++.. .......+..+++|
T Consensus 198 ~~L~l~~~~l-~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l--~~~~~~~~~~l~~L 274 (680)
T 1ziw_A 198 FGLFLNNVQL-GPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL--NVVGNDSFAWLPQL 274 (680)
T ss_dssp CEEECTTCCC-HHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCC--CEECTTTTTTCTTC
T ss_pred hhhhcccccc-ChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCc--CccCcccccCcccc
Confidence 4444443221 1111111100 1234 55555544421 22222334445555
Q ss_pred cEEEccCcccChHHHHHHHHhCCCCcEEeeccCCCC--------C-----CCCCCCCCcEEecCCCccCChhHHHHHHhc
Q 007252 304 EAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGV--------T-----NTDSCRGLVCLKIESCNMITEKGLYQLGSF 370 (611)
Q Consensus 304 ~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~--------~-----~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 370 (611)
+.|+++++.+.......+ ..+++|+.|+++++... . .+..+++|+.|+++++. +...... ....
T Consensus 275 ~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~-l~~~~~~-~~~~ 351 (680)
T 1ziw_A 275 EYFFLEYNNIQHLFSHSL-HGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND-IPGIKSN-MFTG 351 (680)
T ss_dssp CEEECCSCCBSEECTTTT-TTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCC-BCCCCTT-TTTT
T ss_pred cEeeCCCCccCccChhhh-cCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCc-cCCCChh-Hhcc
Confidence 555555544332211111 13445555555432110 0 03344555555555432 2111111 1123
Q ss_pred cCCCcEEecCCCCCCChh--hhhhhc--cCCCceEEEecCCCCCChHhHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHh
Q 007252 371 CLRLEEIDLTDCNGVNDK--GLEYLS--RCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSN 446 (611)
Q Consensus 371 ~~~L~~L~l~~~~~~~~~--~~~~l~--~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 446 (611)
+++|++|+++++ .+... ....+. ..++|+.|+++++ .++......+ ..+++|+.|+++++. ++.........
T Consensus 352 l~~L~~L~Ls~n-~~~~~~l~~~~f~~~~~~~L~~L~L~~n-~l~~~~~~~~-~~l~~L~~L~L~~N~-l~~~~~~~~~~ 427 (680)
T 1ziw_A 352 LINLKYLSLSNS-FTSLRTLTNETFVSLAHSPLHILNLTKN-KISKIESDAF-SWLGHLEVLDLGLNE-IGQELTGQEWR 427 (680)
T ss_dssp CTTCCEEECTTC-BSCCCEECTTTTGGGTTSCCCEEECTTS-CCCEECTTTT-TTCTTCCEEECCSSC-CEEECCSGGGT
T ss_pred ccCCcEEECCCC-chhhhhcchhhhcccccCcCceEECCCC-CCCeEChhhh-hCCCCCCEEeCCCCc-CccccCccccc
Confidence 455555555542 21110 001111 1245566666555 3333222222 256777777777653 32110001224
Q ss_pred cCccCceecccccCCCChHHHHHhhCCCCCCEEecCCCccccHH-HHHHHHhcCCccCEeeccccCCCCHHHHHHHHhhC
Q 007252 447 GCKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSA-GLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYS 525 (611)
Q Consensus 447 ~~~~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~c~~l~~~-~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~ 525 (611)
.+++|++|++++| .++......+..+++|+.|+++++. ++.. ........+++|+.|++++| .++..... ....+
T Consensus 428 ~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~p~~~~~l~~L~~L~Ls~N-~l~~i~~~-~~~~l 503 (680)
T 1ziw_A 428 GLENIFEIYLSYN-KYLQLTRNSFALVPSLQRLMLRRVA-LKNVDSSPSPFQPLRNLTILDLSNN-NIANINDD-MLEGL 503 (680)
T ss_dssp TCTTCCEEECCSC-SEEECCTTTTTTCTTCCEEECTTSC-CBCTTCSSCTTTTCTTCCEEECCSS-CCCCCCTT-TTTTC
T ss_pred CcccccEEecCCC-CcceeChhhhhcCcccccchhcccc-ccccccCCcccccCCCCCEEECCCC-CCCcCChh-hhccc
Confidence 5677777777774 3444444455667888888887742 2211 11112345788999999988 66543222 22346
Q ss_pred CCCCEEEeccCCCChhHHH-------HHhccccccccceeecccCCCHHHHHHHHhhcCCCccchhhhhhhhhcCChHH
Q 007252 526 QNLRQINLSYCALSDMALC-------MVMGNMTRLQDAKLVHLTNCTREGFELALRSCCMRIKKVKLLAPIRFLLSSEI 597 (611)
Q Consensus 526 ~~L~~L~l~~~~l~~~~~~-------~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~c~~l~~l~l~~~~~~~~p~~~ 597 (611)
++|++|++++|.++..... ..+..+++|+.|++.++ +++ .+....+.++++|+.|+++.+-...+|+..
T Consensus 504 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~--~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~ 579 (680)
T 1ziw_A 504 EKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN-GFD--EIPVEVFKDLFELKIIDLGLNNLNTLPASV 579 (680)
T ss_dssp TTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSS-CCC--CCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred cccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCC-CCC--CCCHHHcccccCcceeECCCCCCCcCCHhH
Confidence 8899999999987654220 12567788888888776 333 122222345889999998755445566543
No 14
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.94 E-value=2.4e-29 Score=265.27 Aligned_cols=250 Identities=14% Similarity=0.079 Sum_probs=113.3
Q ss_pred HhhcCCCccEEEccCcccChHHHHHHHHhCCCCcEEeeccCCCCCC--CCCCCCCcEEecCCCccCChhH-HHHHHhccC
Q 007252 296 HMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTN--TDSCRGLVCLKIESCNMITEKG-LYQLGSFCL 372 (611)
Q Consensus 296 ~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~ 372 (611)
.+..+++|++|++.++.+... ..+ .+++|++|+++++..... +..+++|+.|+++++. +.... .......++
T Consensus 302 ~l~~~~~L~~L~l~~n~l~~l--p~~--~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~-l~~~~~~~~~~~~~~ 376 (606)
T 3vq2_A 302 DVPKHFKWQSLSIIRCQLKQF--PTL--DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNA-LSFSGCCSYSDLGTN 376 (606)
T ss_dssp CCCTTCCCSEEEEESCCCSSC--CCC--CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSC-EEEEEECCHHHHCCS
T ss_pred hccccccCCEEEcccccCccc--ccC--CCCccceeeccCCcCccchhhccCCCCCEEECcCCc-cCCCcchhhhhccCC
Confidence 334444555555555544211 111 445555555555532222 4455566666665543 21110 011122455
Q ss_pred CCcEEecCCCCCCChhhhhhhccCCCceEEEecCCCCCChHhHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhcCccCc
Q 007252 373 RLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKKLK 452 (611)
Q Consensus 373 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 452 (611)
+|++|++++ +.+.... ..+..+++|+.|+++++ .+...........+++|++|++++|. ++.... .....+++|+
T Consensus 377 ~L~~L~L~~-n~l~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~ 451 (606)
T 3vq2_A 377 SLRHLDLSF-NGAIIMS-ANFMGLEELQHLDFQHS-TLKRVTEFSAFLSLEKLLYLDISYTN-TKIDFD-GIFLGLTSLN 451 (606)
T ss_dssp CCCEEECCS-CSEEEEC-CCCTTCTTCCEEECTTS-EEESTTTTTTTTTCTTCCEEECTTSC-CEECCT-TTTTTCTTCC
T ss_pred cccEeECCC-Cccccch-hhccCCCCCCeeECCCC-ccCCccChhhhhccccCCEEECcCCC-CCccch-hhhcCCCCCC
Confidence 666666665 3333322 34445566666666655 22221110111245666666666552 221111 1123456666
Q ss_pred eecccccCCCChH-HHHHhhCCCCCCEEecCCCccccHHHHHHHHhcCCccCEeeccccCCCCHHHHHHHHhhCCCCCEE
Q 007252 453 KLNLSYCVNVTDR-GMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQNLRQI 531 (611)
Q Consensus 453 ~L~l~~c~~l~~~-~~~~l~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L 531 (611)
+|++++| .+++. ....+..+++|+.|++++| .++..... ....+++|+.|++++| .++......+ ..+++|+.|
T Consensus 452 ~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~-~~~~l~~L~~L~Ls~N-~l~~~~~~~~-~~l~~L~~L 526 (606)
T 3vq2_A 452 TLKMAGN-SFKDNTLSNVFANTTNLTFLDLSKC-QLEQISWG-VFDTLHRLQLLNMSHN-NLLFLDSSHY-NQLYSLSTL 526 (606)
T ss_dssp EEECTTC-EEGGGEECSCCTTCTTCCEEECTTS-CCCEECTT-TTTTCTTCCEEECCSS-CCSCEEGGGT-TTCTTCCEE
T ss_pred EEECCCC-cCCCcchHHhhccCCCCCEEECCCC-cCCccChh-hhcccccCCEEECCCC-cCCCcCHHHc-cCCCcCCEE
Confidence 6666663 33331 2223445666666666664 33321111 1234566666666666 4443211111 224566666
Q ss_pred EeccCCCChhHHHHHhcccc-ccccceeeccc
Q 007252 532 NLSYCALSDMALCMVMGNMT-RLQDAKLVHLT 562 (611)
Q Consensus 532 ~l~~~~l~~~~~~~~l~~~~-~L~~l~l~~~~ 562 (611)
++++|.++..+. .+..++ +|+.|++.+++
T Consensus 527 ~l~~N~l~~~p~--~~~~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 527 DCSFNRIETSKG--ILQHFPKSLAFFNLTNNS 556 (606)
T ss_dssp ECTTSCCCCEES--CGGGSCTTCCEEECCSCC
T ss_pred ECCCCcCcccCH--hHhhhcccCcEEEccCCC
Confidence 666666554443 244554 36666665543
No 15
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.94 E-value=6.6e-29 Score=260.23 Aligned_cols=463 Identities=18% Similarity=0.113 Sum_probs=269.8
Q ss_pred CCCcEEeccCCCCCChhhHHHHhhhhhhhhccCCceEEeccccCCChHHHHHHHHhCCCccEEeccCCCCCChhhhHHhh
Q 007252 65 PYIKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREAAALS 144 (611)
Q Consensus 65 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~ 144 (611)
++++.|+++++. ++..... .....++|++|+++++ .+.......+ ..+++|++|+++++. +.......+.
T Consensus 28 ~~l~~L~Ls~n~-l~~~~~~------~~~~l~~L~~L~Ls~n-~i~~i~~~~~-~~l~~L~~L~L~~n~-l~~~~~~~~~ 97 (570)
T 2z63_A 28 FSTKNLDLSFNP-LRHLGSY------SFFSFPELQVLDLSRC-EIQTIEDGAY-QSLSHLSTLILTGNP-IQSLALGAFS 97 (570)
T ss_dssp SSCCEEECCSCC-CCEECTT------TTTTCSSCCEEECTTC-CCCEECTTTT-TTCTTCCEEECTTCC-CCEECTTTTT
T ss_pred ccccEEEccCCc-cCccChh------HhhCCCCceEEECCCC-cCCccCcccc-cCchhCCEEeCcCCc-CCccCHhhhc
Confidence 467888888743 2221111 1235678888888887 3433222222 367888888888663 5555556777
Q ss_pred cCCCCcEEeccCCCCCChHHHHHHHhcCCccceeecccccccChHHHHHHHHcCCcCcEEeccCcccChHHHHHhhhcCC
Q 007252 145 FASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATLAK 224 (611)
Q Consensus 145 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 224 (611)
.+++|++|++.++ .++......+ ..+++|++|+++++ .+....+......+++|++|+++++.+.......+..+++
T Consensus 98 ~l~~L~~L~L~~n-~l~~l~~~~~-~~l~~L~~L~L~~n-~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 174 (570)
T 2z63_A 98 GLSSLQKLVAVET-NLASLENFPI-GHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ 174 (570)
T ss_dssp TCTTCCEEECTTS-CCCCSTTCSC-TTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHT
T ss_pred Ccccccccccccc-ccccCCCccc-cccccccEEecCCC-ccceecChhhhcccCCCCEEeCcCCccceecHHHccchhc
Confidence 8888888888874 3333211112 24788888888876 3332111222346788888888888766554455566666
Q ss_pred C----cEEEecCCCCCChhHHHHHHhcCCCccEEEeccccccChHHHHHHHhcCCCCceeccC-----------------
Q 007252 225 L----ESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAG----------------- 283 (611)
Q Consensus 225 L----~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~----------------- 283 (611)
| ++|++.++. +.......+ . ..+|+.|++.++. .....++.....+++++...+.
T Consensus 175 L~~~~~~L~l~~n~-l~~~~~~~~-~-~~~L~~L~l~~n~-~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~ 250 (570)
T 2z63_A 175 MPLLNLSLDLSLNP-MNFIQPGAF-K-EIRLHKLTLRNNF-DSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA 250 (570)
T ss_dssp CTTCCCEEECTTCC-CCEECTTTT-T-TCEEEEEEEESCC-SCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTT
T ss_pred cchhhhhcccCCCC-ceecCHHHh-c-cCcceeEeccccc-ccccchhhhhcCccccceeeeccccccCchhhhhcchhh
Confidence 6 778887653 333222222 2 2367888877642 2223344455555555443321
Q ss_pred ---------------CCCCccchhHHHHhhcCCCccEEEccCcccChHHHHHHHHhCCCCcEEeeccCCCCCC-CCCCCC
Q 007252 284 ---------------HCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTN-TDSCRG 347 (611)
Q Consensus 284 ---------------~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~ 347 (611)
++.. ........+..+++|+.|++.++.+.. +......+ +|++|+++++....- ...+++
T Consensus 251 ~~~l~~l~l~~l~l~~~~~-~~~~~~~~~~~l~~L~~L~l~~~~l~~--l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~ 326 (570)
T 2z63_A 251 LEGLCNLTIEEFRLAYLDY-YLDDIIDLFNCLTNVSSFSLVSVTIER--VKDFSYNF-GWQHLELVNCKFGQFPTLKLKS 326 (570)
T ss_dssp TGGGGGSEEEEEEEEETTE-EESCSTTTTGGGTTCSEEEEESCEECS--CCBCCSCC-CCSEEEEESCBCSSCCBCBCSS
T ss_pred hccccccchhhhhhhcchh-hhhhchhhhcCcCcccEEEecCccchh--hhhhhccC-CccEEeeccCcccccCcccccc
Confidence 1111 122223445566778888887776542 11112233 777888777643221 456677
Q ss_pred CcEEecCCCccCChhHHHHHHhccCCCcEEecCCCCCCChhh--hhhhccCCCceEEEecCCCCCChHhHHHHHhcCCCC
Q 007252 348 LVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKG--LEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRI 425 (611)
Q Consensus 348 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 425 (611)
|+.|++.++........ ..+++|++|++++ +.++... ...+..+++|+.|+++++ .+...... ...+++|
T Consensus 327 L~~L~l~~n~~~~~~~~----~~~~~L~~L~l~~-n~l~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~--~~~l~~L 398 (570)
T 2z63_A 327 LKRLTFTSNKGGNAFSE----VDLPSLEFLDLSR-NGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSN--FLGLEQL 398 (570)
T ss_dssp CCEEEEESCBSCCBCCC----CBCTTCCEEECCS-SCCBEEEEEEHHHHTCSCCCEEECCSC-SEEEEEEE--EETCTTC
T ss_pred cCEEeCcCCcccccccc----ccCCCCCEEeCcC-CccCccccccccccccCccCEEECCCC-cccccccc--ccccCCC
Confidence 88888777653222111 3667888888887 4555443 345567788888888876 33322111 2257788
Q ss_pred cEEeccCCCCCCHHHHHHHHhcCccCceecccccCCCChHHHHHhhCCCCCCEEecCCCccccHHHHHHHHhcCCccCEe
Q 007252 426 QGLDLYKCSGIGDDGLAALSNGCKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADL 505 (611)
Q Consensus 426 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L 505 (611)
++|++++|. ++..........+++|++|++++| .++......+..+++|+.|++++| .+++..+......+++|+.|
T Consensus 399 ~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~p~~~~~l~~L~~L 475 (570)
T 2z63_A 399 EHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGN-SFQENFLPDIFTELRNLTFL 475 (570)
T ss_dssp CEEECTTSE-EESCTTSCTTTTCTTCCEEECTTS-CCEECCTTTTTTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEE
T ss_pred CEEEccCCc-cccccchhhhhcCCCCCEEeCcCC-cccccchhhhhcCCcCcEEECcCC-cCccccchhhhhcccCCCEE
Confidence 888888753 221111112345678888888875 454444455667888888888885 34321122223457788888
Q ss_pred eccccCCCCHHHHHHHHhhCCCCCEEEeccCCCChhHHHHHhccccccccceeeccc
Q 007252 506 DLKHCAKIDDSGFWALAYYSQNLRQINLSYCALSDMALCMVMGNMTRLQDAKLVHLT 562 (611)
Q Consensus 506 ~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~l~~~~~L~~l~l~~~~ 562 (611)
++++| .++......+ ..+++|++|++++|.++.... ..+..+++|+.|++.+++
T Consensus 476 ~l~~n-~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 476 DLSQC-QLEQLSPTAF-NSLSSLQVLNMASNQLKSVPD-GIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp ECTTS-CCCEECTTTT-TTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSC
T ss_pred ECCCC-ccccCChhhh-hcccCCCEEeCCCCcCCCCCH-HHhhcccCCcEEEecCCc
Confidence 88888 6654322222 235788888888888776655 556778888888877763
No 16
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.93 E-value=5e-28 Score=255.21 Aligned_cols=480 Identities=16% Similarity=0.071 Sum_probs=301.6
Q ss_pred CCCcEEeccCCCCCChhhHHHHhhhhhhhhccCCceEEeccccCCChHHHHHHHHhCCCccEEeccCCCCCChhhhHHhh
Q 007252 65 PYIKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREAAALS 144 (611)
Q Consensus 65 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~ 144 (611)
+++++|+++++. +....... ....++|++|+++++ .+.......+ ..+++|++|+++++. +.......+.
T Consensus 32 ~~l~~L~Ls~n~-l~~~~~~~------~~~l~~L~~L~Ls~n-~l~~i~~~~~-~~l~~L~~L~Ls~n~-l~~~~p~~~~ 101 (606)
T 3vq2_A 32 SSTKNIDLSFNP-LKILKSYS------FSNFSELQWLDLSRC-EIETIEDKAW-HGLHHLSNLILTGNP-IQSFSPGSFS 101 (606)
T ss_dssp TTCCEEECTTSC-CCEECTTT------TTTCTTCCEEECTTC-CCCEECTTTT-TTCTTCCEEECTTCC-CCCCCTTSST
T ss_pred CCcCEEECCCCC-cCEeChhh------ccCCccCcEEeCCCC-cccccCHHHh-hchhhcCEeECCCCc-ccccChhhcC
Confidence 567778877643 22211111 234567888888776 3333221222 367788888887653 5555556677
Q ss_pred cCCCCcEEeccCCCCCChHHHHHHHhcCCccceeecccccccChHHHHHHHHcCCcCcEEeccCcccChHHHHHhhhcCC
Q 007252 145 FASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATLAK 224 (611)
Q Consensus 145 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 224 (611)
.+++|++|++.++ .+.......+ ..+++|++|+++++ .+....+......+++|++|+++++.+.......+..+++
T Consensus 102 ~l~~L~~L~L~~n-~l~~~~~~~~-~~l~~L~~L~L~~n-~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 178 (606)
T 3vq2_A 102 GLTSLENLVAVET-KLASLESFPI-GQLITLKKLNVAHN-FIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRE 178 (606)
T ss_dssp TCTTCCEEECTTS-CCCCSSSSCC-TTCTTCCEEECCSS-CCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHH
T ss_pred CcccCCEEEccCC-cccccccccc-CCCCCCCEEeCCCC-cccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhc
Confidence 7788888888774 3322111112 23777888888776 3332222223346777888888877655443333333333
Q ss_pred ----CcEEEecCCCCCChhHHHHHHhcCCCccEEEeccccccChHHHHHHHhcCCCCceeccC-----------------
Q 007252 225 ----LESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAG----------------- 283 (611)
Q Consensus 225 ----L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~----------------- 283 (611)
+++|++.++. ++..... ... ..+|++|+++++. ......+..+..++.++.+.+.
T Consensus 179 L~~~l~~L~l~~n~-l~~~~~~-~~~-~~~L~~L~L~~n~-~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~ 254 (606)
T 3vq2_A 179 NPQVNLSLDMSLNP-IDFIQDQ-AFQ-GIKLHELTLRGNF-NSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSI 254 (606)
T ss_dssp CTTCCCEEECTTCC-CCEECTT-TTT-TCEEEEEEEESCC-SCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGG
T ss_pred cccccceeeccCCC-cceeCcc-ccc-CceeeeeeccCCc-cchhHHHHHhccccccccccccccccccCCcccccChHH
Confidence 3467776643 3321111 112 2367777776643 3333344445555555554431
Q ss_pred ---------------CCCCccchhHHHHhhcCCCccEEEccCcccChHHHHHHHHhCCCCcEEeeccCCCCCC---CCCC
Q 007252 284 ---------------HCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTN---TDSC 345 (611)
Q Consensus 284 ---------------~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~---~~~~ 345 (611)
.... +...... +..+++|+.|++.++.+.... ....+++|++|+++++.. .. + .+
T Consensus 255 ~~~l~~l~l~~l~l~~~~~-~~~~~~~-~~~l~~L~~L~l~~~~~~~l~---~l~~~~~L~~L~l~~n~l-~~lp~~-~l 327 (606)
T 3vq2_A 255 MEGLCDVTIDEFRLTYTND-FSDDIVK-FHCLANVSAMSLAGVSIKYLE---DVPKHFKWQSLSIIRCQL-KQFPTL-DL 327 (606)
T ss_dssp GTTGGGSEEEEEEECCCTT-CCGGGGS-CGGGTTCSEEEEESCCCCCCC---CCCTTCCCSEEEEESCCC-SSCCCC-CC
T ss_pred hhhhhhccHhheecccccc-ccccccc-cccCCCCCEEEecCccchhhh---hccccccCCEEEcccccC-cccccC-CC
Confidence 2222 2233333 778899999999998775433 223678999999999864 33 5 88
Q ss_pred CCCcEEecCCCccCChhHHHHHHhccCCCcEEecCCCCCCChhh--hhhhccCCCceEEEecCCCCCChHhHHHHHhcCC
Q 007252 346 RGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKG--LEYLSRCSELLFLKLGLCENISDKGLFYIASNCL 423 (611)
Q Consensus 346 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 423 (611)
++|+.|+++++....... ...+++|++|++++ +.++... ...+..+++|++|+++++ .++... .....++
T Consensus 328 ~~L~~L~l~~n~~~~~~~----~~~l~~L~~L~ls~-n~l~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~--~~~~~l~ 399 (606)
T 3vq2_A 328 PFLKSLTLTMNKGSISFK----KVALPSLSYLDLSR-NALSFSGCCSYSDLGTNSLRHLDLSFN-GAIIMS--ANFMGLE 399 (606)
T ss_dssp SSCCEEEEESCSSCEECC----CCCCTTCCEEECCS-SCEEEEEECCHHHHCCSCCCEEECCSC-SEEEEC--CCCTTCT
T ss_pred CccceeeccCCcCccchh----hccCCCCCEEECcC-CccCCCcchhhhhccCCcccEeECCCC-ccccch--hhccCCC
Confidence 999999999885444331 22689999999999 5666543 456778999999999998 444322 1123679
Q ss_pred CCcEEeccCCCCCCHHHHHHHHhcCccCceecccccCCCChHHHHHhhCCCCCCEEecCCCccccHHHHHHHHhcCCccC
Q 007252 424 RIQGLDLYKCSGIGDDGLAALSNGCKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLA 503 (611)
Q Consensus 424 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~ 503 (611)
+|++|++++|. ++..........+++|++|++++| .++......+..+++|+.|++++| .+++..+......+++|+
T Consensus 400 ~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~ 476 (606)
T 3vq2_A 400 ELQHLDFQHST-LKRVTEFSAFLSLEKLLYLDISYT-NTKIDFDGIFLGLTSLNTLKMAGN-SFKDNTLSNVFANTTNLT 476 (606)
T ss_dssp TCCEEECTTSE-EESTTTTTTTTTCTTCCEEECTTS-CCEECCTTTTTTCTTCCEEECTTC-EEGGGEECSCCTTCTTCC
T ss_pred CCCeeECCCCc-cCCccChhhhhccccCCEEECcCC-CCCccchhhhcCCCCCCEEECCCC-cCCCcchHHhhccCCCCC
Confidence 99999999873 332211122346899999999996 466555556788999999999995 454322222344689999
Q ss_pred EeeccccCCCCHHHHHHHHhhCCCCCEEEeccCCCChhHHHHHhccccccccceeecccCCCHHHHHHHHhhcCC-Cccc
Q 007252 504 DLDLKHCAKIDDSGFWALAYYSQNLRQINLSYCALSDMALCMVMGNMTRLQDAKLVHLTNCTREGFELALRSCCM-RIKK 582 (611)
Q Consensus 504 ~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~c~-~l~~ 582 (611)
.|++++| .++......+ ..+++|++|++++|.++.... ..+..+++|+.|++.++. ++. +... +..++ +|+.
T Consensus 477 ~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~l~~N~-l~~--~p~~-~~~l~~~L~~ 549 (606)
T 3vq2_A 477 FLDLSKC-QLEQISWGVF-DTLHRLQLLNMSHNNLLFLDS-SHYNQLYSLSTLDCSFNR-IET--SKGI-LQHFPKSLAF 549 (606)
T ss_dssp EEECTTS-CCCEECTTTT-TTCTTCCEEECCSSCCSCEEG-GGTTTCTTCCEEECTTSC-CCC--EESC-GGGSCTTCCE
T ss_pred EEECCCC-cCCccChhhh-cccccCCEEECCCCcCCCcCH-HHccCCCcCCEEECCCCc-Ccc--cCHh-HhhhcccCcE
Confidence 9999999 7765432222 346999999999999988766 678899999999998884 442 1111 23365 5888
Q ss_pred hhhh
Q 007252 583 VKLL 586 (611)
Q Consensus 583 l~l~ 586 (611)
+++.
T Consensus 550 l~l~ 553 (606)
T 3vq2_A 550 FNLT 553 (606)
T ss_dssp EECC
T ss_pred EEcc
Confidence 8875
No 17
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.93 E-value=1.3e-26 Score=241.48 Aligned_cols=437 Identities=15% Similarity=0.096 Sum_probs=200.2
Q ss_pred ccCCceEEeccccCCChHHHHHHHHhCCCccEEeccCCCCCChhhhHHhhcCCCCcEEeccCCCCCChHHHHHHHhcCCc
Q 007252 95 TRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCVN 174 (611)
Q Consensus 95 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 174 (611)
.+++++|+++++ .+.......+ ..+++|++|+++++ .+.......+..+++|++|+++++ .++..........+++
T Consensus 49 l~~L~~L~Ls~n-~i~~~~~~~~-~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~l~~ 124 (549)
T 2z81_A 49 CANLQVLILKSS-RINTIEGDAF-YSLGSLEHLDLSDN-HLSSLSSSWFGPLSSLKYLNLMGN-PYQTLGVTSLFPNLTN 124 (549)
T ss_dssp CTTCCEEECTTS-CCCEECTTTT-TTCTTCCEEECTTS-CCCSCCHHHHTTCTTCCEEECTTC-CCSSSCSSCSCTTCTT
T ss_pred CCcccEEECCCC-CcCccChhhc-cccccCCEEECCCC-ccCccCHHHhccCCCCcEEECCCC-cccccchhhhhhccCC
Confidence 445556665555 2222111111 24555555555544 233444444555555555555553 2221111111122455
Q ss_pred cceeecccccccChHHHHHHHHcCCcCcEEeccCcccChHHHHHhhhcCCCcEEEecCCCCCChhHHHHHHhcCCCccEE
Q 007252 175 LERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTI 254 (611)
Q Consensus 175 L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L 254 (611)
|++|+++++..+..... .....+++|++|+++++.+.......+..+++|++|++.++. ... ....+...+++|+.|
T Consensus 125 L~~L~L~~n~~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-~~~-~~~~~~~~l~~L~~L 201 (549)
T 2z81_A 125 LQTLRIGNVETFSEIRR-IDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE-SAF-LLEIFADILSSVRYL 201 (549)
T ss_dssp CCEEEEEESSSCCEECT-TTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB-STT-HHHHHHHSTTTBSEE
T ss_pred ccEEECCCCccccccCH-hhhhcccccCeeeccCCcccccChhhhhccccCceEecccCc-ccc-cchhhHhhcccccEE
Confidence 55555555421221110 011234555555555554444334444555555555555432 211 111222335555555
Q ss_pred EeccccccChHH-HHHHHhcCCCCceeccCCCCCccchhH----HHHhhcCCCccEEEccCcccChHH-----HHHHHHh
Q 007252 255 FVSRCKFVSSTG-LISVIRGHSGLLQLDAGHCFSELSTTL----LHHMRDLKNLEAITMDGARISDSC-----FQTISFN 324 (611)
Q Consensus 255 ~l~~~~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~----~~~l~~~~~L~~L~l~~~~~~~~~-----l~~~~~~ 324 (611)
+++++....... ...+...+++|+.|++.++. +.... ...+..+++|+.+++.++.+.... .......
T Consensus 202 ~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~--l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~ 279 (549)
T 2z81_A 202 ELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSV--LTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSE 279 (549)
T ss_dssp EEESCBCTTCCCCCCSSCCCCCCCCEEEEESCE--EEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCC
T ss_pred EccCCccccccccccchhhhhhcccceeccccc--cchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhh
Confidence 555532211000 00011123445555554442 12211 112233445555555444321100 0000112
Q ss_pred CCCCcEEeeccCCCCCC---------CCCCCCCcEEecCCCccCChhHHHHHHhccCCCcEEecCCCCCCChhhh---hh
Q 007252 325 CKSLVEIGLSKCLGVTN---------TDSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGL---EY 392 (611)
Q Consensus 325 ~~~L~~L~l~~~~~~~~---------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---~~ 392 (611)
+++++.|.+.++..... ....++|+.|+++++. +.... ..+...+++|++|++++ +.+..... ..
T Consensus 280 l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~-l~~ip-~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~ 356 (549)
T 2z81_A 280 LGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK-VFLVP-CSFSQHLKSLEFLDLSE-NLMVEEYLKNSAC 356 (549)
T ss_dssp CTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSC-CCCCC-HHHHHHCTTCCEEECCS-SCCCHHHHHHHTC
T ss_pred hcccccccccccccchhhhcccchhhhhhcccceEEEeccCc-cccCC-HHHHhcCccccEEEccC-Cccccccccchhh
Confidence 34444444444321100 1123456666665543 22211 12223566777777776 45554332 22
Q ss_pred hccCCCceEEEecCCCCCChHhH-HHHHhcCCCCcEEeccCCCCCCHHHHHHHHhcCccCceecccccCCCChHHHHHhh
Q 007252 393 LSRCSELLFLKLGLCENISDKGL-FYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKKLKKLNLSYCVNVTDRGMEHIR 471 (611)
Q Consensus 393 l~~~~~L~~L~l~~~~~~~~~~~-~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~ 471 (611)
+..+++|+.|++++| .++.... ......+++|++|++++| .++. +......+++|++|+++++ .++.... .
T Consensus 357 ~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~--lp~~~~~~~~L~~L~Ls~N-~l~~l~~---~ 428 (549)
T 2z81_A 357 KGAWPSLQTLVLSQN-HLRSMQKTGEILLTLKNLTSLDISRN-TFHP--MPDSCQWPEKMRFLNLSST-GIRVVKT---C 428 (549)
T ss_dssp TTSSTTCCEEECTTS-CCCCHHHHHHHGGGCTTCCEEECTTC-CCCC--CCSCCCCCTTCCEEECTTS-CCSCCCT---T
T ss_pred hhccccCcEEEccCC-cccccccchhhhhcCCCCCEEECCCC-CCcc--CChhhcccccccEEECCCC-Ccccccc---h
Confidence 455667777777766 4443321 122345677777777765 3331 1112234566777777664 3432110 0
Q ss_pred CCCCCCEEecCCCccccHHHHHHHHhcCCccCEeeccccCCCCHHHHHHHHhhCCCCCEEEeccCCCChhHHHHHhcccc
Q 007252 472 FIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQNLRQINLSYCALSDMALCMVMGNMT 551 (611)
Q Consensus 472 ~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~l~~~~ 551 (611)
-.++|+.|++++| .++.. ...+++|++|++++| .++.. ... ..+++|++|++++|.++.... ..+..++
T Consensus 429 ~~~~L~~L~Ls~N-~l~~~-----~~~l~~L~~L~Ls~N-~l~~i--p~~-~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~ 497 (549)
T 2z81_A 429 IPQTLEVLDVSNN-NLDSF-----SLFLPRLQELYISRN-KLKTL--PDA-SLFPVLLVMKISRNQLKSVPD-GIFDRLT 497 (549)
T ss_dssp SCTTCSEEECCSS-CCSCC-----CCCCTTCCEEECCSS-CCSSC--CCG-GGCTTCCEEECCSSCCCCCCT-TGGGGCT
T ss_pred hcCCceEEECCCC-Chhhh-----cccCChhcEEECCCC-ccCcC--CCc-ccCccCCEEecCCCccCCcCH-HHHhcCc
Confidence 1256777777774 44432 235777888888877 65532 121 345778888888887776655 5567777
Q ss_pred ccccceeeccc
Q 007252 552 RLQDAKLVHLT 562 (611)
Q Consensus 552 ~L~~l~l~~~~ 562 (611)
+|+.|++.+++
T Consensus 498 ~L~~L~l~~N~ 508 (549)
T 2z81_A 498 SLQKIWLHTNP 508 (549)
T ss_dssp TCCEEECCSSC
T ss_pred ccCEEEecCCC
Confidence 77777777664
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.93 E-value=3.3e-26 Score=236.41 Aligned_cols=439 Identities=15% Similarity=0.125 Sum_probs=294.5
Q ss_pred hhccCCceEEeccccCCChHHHHHHHHhCCCccEEeccCCCCCChhhhHHhhcCCCCcEEeccCCCCCChHHHHHHHhcC
Q 007252 93 SWTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRC 172 (611)
Q Consensus 93 ~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 172 (611)
...+++++|+++++ .+.......+. .+++|++|+++++ .+.......+..+++|++|+++++ .++..... .+
T Consensus 18 ~~~~~L~~L~Ls~n-~i~~~~~~~~~-~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~----~l 89 (520)
T 2z7x_B 18 DLSQKTTILNISQN-YISELWTSDIL-SLSKLRILIISHN-RIQYLDISVFKFNQELEYLDLSHN-KLVKISCH----PT 89 (520)
T ss_dssp SCCTTCSEEECCSS-CCCCCCHHHHT-TCTTCCEEECCSS-CCCEEEGGGGTTCTTCCEEECCSS-CCCEEECC----CC
T ss_pred cccccccEEECCCC-cccccChhhcc-ccccccEEecCCC-ccCCcChHHhhcccCCCEEecCCC-ceeecCcc----cc
Confidence 34489999999998 44443333343 7899999999976 466666778888999999999984 55532211 48
Q ss_pred CccceeecccccccChHHHHHHHHcCCcCcEEeccCcccChHHHHHhhhcCCC--cEEEecCCCCC-ChhHHHHHHhcCC
Q 007252 173 VNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATLAKL--ESLVMVGCPCV-DDTGLRFLESGCP 249 (611)
Q Consensus 173 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L--~~L~l~~~~~~-~~~~~~~l~~~~~ 249 (611)
++|++|+++++ .++...+......+++|++|+++++.+... .+..+++| ++|++.++... ....+..+.. +.
T Consensus 90 ~~L~~L~L~~N-~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~-l~ 164 (520)
T 2z7x_B 90 VNLKHLDLSFN-AFDALPICKEFGNMSQLKFLGLSTTHLEKS---SVLPIAHLNISKVLLVLGETYGEKEDPEGLQD-FN 164 (520)
T ss_dssp CCCSEEECCSS-CCSSCCCCGGGGGCTTCCEEEEEESSCCGG---GGGGGTTSCEEEEEEEECTTTTSSCCTTTTTT-CC
T ss_pred CCccEEeccCC-ccccccchhhhccCCcceEEEecCcccchh---hccccccceeeEEEeecccccccccccccccc-cc
Confidence 89999999987 444322222335788999999999987763 45667777 99999876421 1111111211 11
Q ss_pred -CccEEEeccccccChHHHHHHHhcCCCCceeccCCCCC----ccchhHHHHhhcCCCccEEEccCcccChHHHHHHHH-
Q 007252 250 -LLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFS----ELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISF- 323 (611)
Q Consensus 250 -~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~----~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~- 323 (611)
....+++.++.... ......+..+++|+.++++++.. .........+..+++|+.|++.++.+....+..+..
T Consensus 165 ~~~l~l~l~~n~~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~ 243 (520)
T 2z7x_B 165 TESLHIVFPTNKEFH-FILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQL 243 (520)
T ss_dssp EEEEEEECCSSSCCC-CCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHH
T ss_pred cceEEEEeccCcchh-hhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHH
Confidence 12233444332211 11111234578899998887630 012233457888999999999999888766554432
Q ss_pred -hCCCCcEEeeccCC---CCCC-C-----CCCCCCcEEecCCCcc-CChhHHHHHHhccCCCcEEecCCCCCCChhhhhh
Q 007252 324 -NCKSLVEIGLSKCL---GVTN-T-----DSCRGLVCLKIESCNM-ITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEY 392 (611)
Q Consensus 324 -~~~~L~~L~l~~~~---~~~~-~-----~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 392 (611)
..++|++|+++++. .+.. + ..+++|+.++++++.. +....+.... ..++|+.|++++ +.+.... .
T Consensus 244 ~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~-~~~~L~~L~l~~-n~l~~~~--~ 319 (520)
T 2z7x_B 244 VWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIF-SNMNIKNFTVSG-TRMVHML--C 319 (520)
T ss_dssp HHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHH-HTCCCSEEEEES-SCCCCCC--C
T ss_pred hhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhccc-ccCceeEEEcCC-Ccccccc--c
Confidence 35799999999875 2222 3 7788888888887553 2223333332 235799999999 4554432 2
Q ss_pred hccCCCceEEEecCCCCCChHhHHHHHhcCCCCcEEeccCCCCCCH-HHHHHHHhcCccCceecccccCCCCh-HHHHHh
Q 007252 393 LSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGD-DGLAALSNGCKKLKKLNLSYCVNVTD-RGMEHI 470 (611)
Q Consensus 393 l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~~L~~L~l~~c~~l~~-~~~~~l 470 (611)
...+++|++|+++++ .+++.....+ ..+++|++|++++| .++. ..+......+++|++|+++++ .++. .....+
T Consensus 320 ~~~l~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~L~~N-~l~~l~~~~~~~~~l~~L~~L~Ls~N-~l~~~l~~~~~ 395 (520)
T 2z7x_B 320 PSKISPFLHLDFSNN-LLTDTVFENC-GHLTELETLILQMN-QLKELSKIAEMTTQMKSLQQLDISQN-SVSYDEKKGDC 395 (520)
T ss_dssp CSSCCCCCEEECCSS-CCCTTTTTTC-CCCSSCCEEECCSS-CCCBHHHHHHHHTTCTTCCEEECCSS-CCBCCGGGCSC
T ss_pred hhhCCcccEEEeECC-ccChhhhhhh-ccCCCCCEEEccCC-ccCccccchHHHhhCCCCCEEECCCC-cCCcccccchh
Confidence 257899999999998 6655333333 37899999999997 5554 234455577899999999995 5655 444446
Q ss_pred hCCCCCCEEecCCCccccHHHHHHHHhcC-CccCEeeccccCCCCHHHHHHHHhhCCCCCEEEeccCCCChhHHHHHhcc
Q 007252 471 RFIEDLSDLELRGLTKITSAGLTALAAGC-KRLADLDLKHCAKIDDSGFWALAYYSQNLRQINLSYCALSDMALCMVMGN 549 (611)
Q Consensus 471 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~~-~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~l~~ 549 (611)
..+++|+.|++++| .++... ...+ ++|+.|++++| .++.. ......+++|++|++++|.++..+. ..+..
T Consensus 396 ~~l~~L~~L~Ls~N-~l~~~~----~~~l~~~L~~L~Ls~N-~l~~i--p~~~~~l~~L~~L~L~~N~l~~l~~-~~~~~ 466 (520)
T 2z7x_B 396 SWTKSLLSLNMSSN-ILTDTI----FRCLPPRIKVLDLHSN-KIKSI--PKQVVKLEALQELNVASNQLKSVPD-GIFDR 466 (520)
T ss_dssp CCCTTCCEEECCSS-CCCGGG----GGSCCTTCCEEECCSS-CCCCC--CGGGGGCTTCCEEECCSSCCCCCCT-TTTTT
T ss_pred ccCccCCEEECcCC-CCCcch----hhhhcccCCEEECCCC-ccccc--chhhhcCCCCCEEECCCCcCCccCH-HHhcc
Confidence 67899999999995 565322 2233 69999999999 77632 2222367999999999999887665 45788
Q ss_pred ccccccceeeccc
Q 007252 550 MTRLQDAKLVHLT 562 (611)
Q Consensus 550 ~~~L~~l~l~~~~ 562 (611)
+++|+.|++.+++
T Consensus 467 l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 467 LTSLQKIWLHTNP 479 (520)
T ss_dssp CTTCCEEECCSSC
T ss_pred CCcccEEECcCCC
Confidence 9999999998875
No 19
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.91 E-value=5.5e-27 Score=245.66 Aligned_cols=458 Identities=17% Similarity=0.103 Sum_probs=294.6
Q ss_pred hhccCCceEEeccccCCChHHHHHHHHhCCCccEEeccCCCCCChhhhHHhhcCCCCcEEeccCCCCCChHHHHHHHhcC
Q 007252 93 SWTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRC 172 (611)
Q Consensus 93 ~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 172 (611)
....++++|+++++ .++......+ ..+++|++|+++++ .+.......+..+++|++|++.++ .++......+ ..+
T Consensus 25 ~l~~~l~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~-~~l 99 (570)
T 2z63_A 25 NLPFSTKNLDLSFN-PLRHLGSYSF-FSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAF-SGL 99 (570)
T ss_dssp SSCSSCCEEECCSC-CCCEECTTTT-TTCSSCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTT-TTC
T ss_pred CccccccEEEccCC-ccCccChhHh-hCCCCceEEECCCC-cCCccCcccccCchhCCEEeCcCC-cCCccCHhhh-cCc
Confidence 44568999999998 3433322223 37899999999987 466666677888999999999985 4544322223 348
Q ss_pred CccceeecccccccChHHHHHHHHcCCcCcEEeccCcccChH-HHHHhhhcCCCcEEEecCCCCCChhHHHHHHhcCCCc
Q 007252 173 VNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTND-SFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLL 251 (611)
Q Consensus 173 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 251 (611)
++|++|++.++ .+....... ...+++|++|+++++.+... ....+.++++|++|+++++. ++......+.. +.+|
T Consensus 100 ~~L~~L~L~~n-~l~~l~~~~-~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~-l~~L 175 (570)
T 2z63_A 100 SSLQKLVAVET-NLASLENFP-IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRV-LHQM 175 (570)
T ss_dssp TTCCEEECTTS-CCCCSTTCS-CTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC-CCEECGGGGHH-HHTC
T ss_pred ccccccccccc-ccccCCCcc-ccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCc-cceecHHHccc-hhcc
Confidence 99999999987 443322111 34689999999999977653 24568889999999999864 44322222222 3444
Q ss_pred ----cEEEeccccccChHHHHHHHhcCCCCceeccCCCCCccchhHHHHhhcCCCccEEEcc------------------
Q 007252 252 ----KTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMD------------------ 309 (611)
Q Consensus 252 ----~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~------------------ 309 (611)
+.++++++..... . +..+. ..+|++|++.++.. ........+..+++++...+.
T Consensus 176 ~~~~~~L~l~~n~l~~~-~-~~~~~-~~~L~~L~l~~n~~-~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~ 251 (570)
T 2z63_A 176 PLLNLSLDLSLNPMNFI-Q-PGAFK-EIRLHKLTLRNNFD-SLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSAL 251 (570)
T ss_dssp TTCCCEEECTTCCCCEE-C-TTTTT-TCEEEEEEEESCCS-CTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTT
T ss_pred chhhhhcccCCCCceec-C-HHHhc-cCcceeEecccccc-cccchhhhhcCccccceeeeccccccCchhhhhcchhhh
Confidence 7888887542211 1 11122 23799999887743 333445555556655544332
Q ss_pred --------------Cc-ccChHHHHHHHHhCCCCcEEeeccCCC--CCC-CCCCCCCcEEecCCCccCChhHHHHHHhcc
Q 007252 310 --------------GA-RISDSCFQTISFNCKSLVEIGLSKCLG--VTN-TDSCRGLVCLKIESCNMITEKGLYQLGSFC 371 (611)
Q Consensus 310 --------------~~-~~~~~~l~~~~~~~~~L~~L~l~~~~~--~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 371 (611)
++ .+... .......+++|++|+++++.. +.. ...+ +|++|++++|.. ..... ..+
T Consensus 252 ~~l~~l~l~~l~l~~~~~~~~~-~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~-~~l~~----~~l 324 (570)
T 2z63_A 252 EGLCNLTIEEFRLAYLDYYLDD-IIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKF-GQFPT----LKL 324 (570)
T ss_dssp GGGGGSEEEEEEEEETTEEESC-STTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBC-SSCCB----CBC
T ss_pred ccccccchhhhhhhcchhhhhh-chhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCcc-cccCc----ccc
Confidence 11 11000 111123568889998887742 222 4455 899999988653 21111 267
Q ss_pred CCCcEEecCCCCCCChhhhhhhccCCCceEEEecCCCCCChHh--HHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhcCc
Q 007252 372 LRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKG--LFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCK 449 (611)
Q Consensus 372 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~--~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 449 (611)
++|++|++.++ .+..... ...+++|+.|+++++ .++... ...+ ..+++|++|++++|. ++..... ...++
T Consensus 325 ~~L~~L~l~~n-~~~~~~~--~~~~~~L~~L~l~~n-~l~~~~~~~~~~-~~~~~L~~L~l~~n~-l~~~~~~--~~~l~ 396 (570)
T 2z63_A 325 KSLKRLTFTSN-KGGNAFS--EVDLPSLEFLDLSRN-GLSFKGCCSQSD-FGTTSLKYLDLSFNG-VITMSSN--FLGLE 396 (570)
T ss_dssp SSCCEEEEESC-BSCCBCC--CCBCTTCCEEECCSS-CCBEEEEEEHHH-HTCSCCCEEECCSCS-EEEEEEE--EETCT
T ss_pred cccCEEeCcCC-ccccccc--cccCCCCCEEeCcCC-ccCccccccccc-cccCccCEEECCCCc-ccccccc--ccccC
Confidence 89999999884 4432221 167899999999987 555332 1222 378999999999873 3321111 34689
Q ss_pred cCceecccccCCCChHH-HHHhhCCCCCCEEecCCCccccHHHHHHHHhcCCccCEeeccccCCCCHHHHHHHHhhCCCC
Q 007252 450 KLKKLNLSYCVNVTDRG-MEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQNL 528 (611)
Q Consensus 450 ~L~~L~l~~c~~l~~~~-~~~l~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L 528 (611)
+|++|++++|. ++... ...+..+++|+.|++++| .++... ......+++|+.|++++| .+++..+......+++|
T Consensus 397 ~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~l~~n-~l~~~~~p~~~~~l~~L 472 (570)
T 2z63_A 397 QLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHT-HTRVAF-NGIFNGLSSLEVLKMAGN-SFQENFLPDIFTELRNL 472 (570)
T ss_dssp TCCEEECTTSE-EESCTTSCTTTTCTTCCEEECTTS-CCEECC-TTTTTTCTTCCEEECTTC-EEGGGEECSCCTTCTTC
T ss_pred CCCEEEccCCc-cccccchhhhhcCCCCCEEeCcCC-cccccc-hhhhhcCCcCcEEECcCC-cCccccchhhhhcccCC
Confidence 99999999853 44332 235678999999999996 343221 122346899999999999 65432222333457899
Q ss_pred CEEEeccCCCChhHHHHHhccccccccceeecccCCCHHHHHHHHhhcCCCccchhhh
Q 007252 529 RQINLSYCALSDMALCMVMGNMTRLQDAKLVHLTNCTREGFELALRSCCMRIKKVKLL 586 (611)
Q Consensus 529 ~~L~l~~~~l~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~c~~l~~l~l~ 586 (611)
++|++++|.+++... ..+..+++|+.|++.++ +++... ...+..+++|+.+++.
T Consensus 473 ~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~--~~~~~~l~~L~~L~l~ 526 (570)
T 2z63_A 473 TFLDLSQCQLEQLSP-TAFNSLSSLQVLNMASN-QLKSVP--DGIFDRLTSLQKIWLH 526 (570)
T ss_dssp CEEECTTSCCCEECT-TTTTTCTTCCEEECCSS-CCSCCC--TTTTTTCTTCCEEECC
T ss_pred CEEECCCCccccCCh-hhhhcccCCCEEeCCCC-cCCCCC--HHHhhcccCCcEEEec
Confidence 999999999988765 67889999999999887 343221 1123458899999986
No 20
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.90 E-value=7.7e-28 Score=261.90 Aligned_cols=183 Identities=22% Similarity=0.121 Sum_probs=99.3
Q ss_pred CCCCcEEeccCCCCCChhhHHHHhhhhhhhhccCCceEEeccccCCChHHHHHHHHhCCCccEEeccCCCCCChhhhHHh
Q 007252 64 YPYIKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREAAAL 143 (611)
Q Consensus 64 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l 143 (611)
.++++.|+++++. ++..... ......+|++|+++++..........+ ..+++|++|+++++. +.......+
T Consensus 23 p~~l~~LdLs~N~-i~~i~~~------~~~~l~~L~~LdLs~n~~~~~i~~~~f-~~L~~L~~L~Ls~N~-l~~~~p~~~ 93 (844)
T 3j0a_A 23 LNTTERLLLSFNY-IRTVTAS------SFPFLEQLQLLELGSQYTPLTIDKEAF-RNLPNLRILDLGSSK-IYFLHPDAF 93 (844)
T ss_dssp CTTCCEEEEESCC-CCEECSS------SCSSCCSCSEEEECTTCCCCEECTTTT-SSCTTCCEEECTTCC-CCEECTTSS
T ss_pred CCCcCEEECCCCc-CCccChh------HCcccccCeEEeCCCCCCccccCHHHh-cCCCCCCEEECCCCc-CcccCHhHc
Confidence 3567788887643 2221111 123556778888877632222111122 367778888887653 555556667
Q ss_pred hcCCCCcEEeccCCCCCChHHHHH-HHhcCCccceeecccccccChHHHHHHHHcCCcCcEEeccCcccChHHHHHhhhc
Q 007252 144 SFASGLKEVKLDKCLNVTDVGLAK-IAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATL 222 (611)
Q Consensus 144 ~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~ 222 (611)
..+++|++|++.++ .++...... ....+++|++|+++++ .+...........+++|++|++++|.+.......+..+
T Consensus 94 ~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l 171 (844)
T 3j0a_A 94 QGLFHLFELRLYFC-GLSDAVLKDGYFRNLKALTRLDLSKN-QIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL 171 (844)
T ss_dssp CSCSSCCCEECTTC-CCSSCCSTTCCCSSCSSCCEEEEESC-CCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHH
T ss_pred cCCcccCEeeCcCC-CCCcccccCccccccCCCCEEECCCC-cccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccc
Confidence 77778888888774 333211111 1223677788887776 33322221223467778888887776554433444444
Q ss_pred --CCCcEEEecCCCCCChhHHHHHHhcCC------CccEEEeccc
Q 007252 223 --AKLESLVMVGCPCVDDTGLRFLESGCP------LLKTIFVSRC 259 (611)
Q Consensus 223 --~~L~~L~l~~~~~~~~~~~~~l~~~~~------~L~~L~l~~~ 259 (611)
++|+.|++.++. +.......+.. ++ .|+.|+++++
T Consensus 172 ~~~~L~~L~L~~n~-l~~~~~~~~~~-~~~~~~~~~L~~L~Ls~n 214 (844)
T 3j0a_A 172 QGKTLSFFSLAANS-LYSRVSVDWGK-CMNPFRNMVLEILDVSGN 214 (844)
T ss_dssp HHCSSCCCEECCSB-SCCCCCCCCCS-SSCTTTTCCBSEEBCSSC
T ss_pred cCCccceEECCCCc-cccccccchhh-cCCccccCceeEEecCCC
Confidence 677777777654 22211111111 22 3778888775
No 21
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.90 E-value=8e-27 Score=253.91 Aligned_cols=465 Identities=14% Similarity=0.082 Sum_probs=232.8
Q ss_pred HHhcCCCCcEEeccCCCCCChhhHHHHhhhhhhhhccCCceEEeccccCCChHHHHHHHHhCCCccEEeccCCCCCChhh
Q 007252 60 LLDKYPYIKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDRE 139 (611)
Q Consensus 60 ~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~ 139 (611)
.+..+++|++|+++++.......... .....+|++|+++++ .+.......+ ..+++|++|+++++. +.+..
T Consensus 43 ~~~~l~~L~~LdLs~n~~~~~i~~~~------f~~L~~L~~L~Ls~N-~l~~~~p~~~-~~l~~L~~L~Ls~n~-l~~~~ 113 (844)
T 3j0a_A 43 SFPFLEQLQLLELGSQYTPLTIDKEA------FRNLPNLRILDLGSS-KIYFLHPDAF-QGLFHLFELRLYFCG-LSDAV 113 (844)
T ss_dssp SCSSCCSCSEEEECTTCCCCEECTTT------TSSCTTCCEEECTTC-CCCEECTTSS-CSCSSCCCEECTTCC-CSSCC
T ss_pred HCcccccCeEEeCCCCCCccccCHHH------hcCCCCCCEEECCCC-cCcccCHhHc-cCCcccCEeeCcCCC-CCccc
Confidence 45667788888888764332211111 245567888888877 3332222222 267888888888764 33322
Q ss_pred hH--HhhcCCCCcEEeccCCCCCChHHHHHHHhcCCccceeecccccccCh---HHHHHHHHcCCcCcEEeccCcccChH
Q 007252 140 AA--ALSFASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISD---LGIDLLCKKCLDLKSLDVSYLKLTND 214 (611)
Q Consensus 140 ~~--~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~l~~~~~~L~~L~l~~~~~~~~ 214 (611)
+. .+..+++|++|+++++ .+...........+++|++|+++++ .+.. ..+..+. .++|+.|+++.+.+...
T Consensus 114 ~~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~L~~L~~L~Ls~N-~i~~~~~~~l~~l~--~~~L~~L~L~~n~l~~~ 189 (844)
T 3j0a_A 114 LKDGYFRNLKALTRLDLSKN-QIRSLYLHPSFGKLNSLKSIDFSSN-QIFLVCEHELEPLQ--GKTLSFFSLAANSLYSR 189 (844)
T ss_dssp STTCCCSSCSSCCEEEEESC-CCCCCCCCGGGGTCSSCCEEEEESS-CCCCCCSGGGHHHH--HCSSCCCEECCSBSCCC
T ss_pred ccCccccccCCCCEEECCCC-cccccccchhHhhCCCCCEEECCCC-cCCeeCHHHccccc--CCccceEECCCCccccc
Confidence 22 3667788888888874 3433222222334788888888876 3322 2222222 16788888888866554
Q ss_pred HHHHhhhcCC------CcEEEecCCCCCChhHHHHHHhc--CCCccEEEecccc--------ccChHHHHHHHhc--CCC
Q 007252 215 SFCSIATLAK------LESLVMVGCPCVDDTGLRFLESG--CPLLKTIFVSRCK--------FVSSTGLISVIRG--HSG 276 (611)
Q Consensus 215 ~~~~l~~~~~------L~~L~l~~~~~~~~~~~~~l~~~--~~~L~~L~l~~~~--------~~~~~~l~~~~~~--~~~ 276 (611)
....+..+++ |+.|+++++. ++......+... ...+..+.+..+. .+..... ..+.+ .++
T Consensus 190 ~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~-~~f~~l~~~~ 267 (844)
T 3j0a_A 190 VSVDWGKCMNPFRNMVLEILDVSGNG-WTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQ-NTFAGLARSS 267 (844)
T ss_dssp CCCCCCSSSCTTTTCCBSEEBCSSCC-SSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGG-TTTTTTTTSC
T ss_pred cccchhhcCCccccCceeEEecCCCc-CchhHHHHHHhhcCcccccceecccccccccccccccCCCCh-hhhhccccCC
Confidence 3333444443 8888888753 332222222221 2445555544110 0000000 00111 245
Q ss_pred CceeccCCCCCccchhHHHHhhcCCCccEEEccCcccChHHHHHHHHhCCCCcEEeeccCCCCCC----CCCCCCCcEEe
Q 007252 277 LLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTN----TDSCRGLVCLK 352 (611)
Q Consensus 277 L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~L~~L~ 352 (611)
|+.|+++++.. .......+..+++|+.|+++++.+.......+ ..+++|++|+++++..... +..+++|+.|+
T Consensus 268 L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 344 (844)
T 3j0a_A 268 VRHLDLSHGFV--FSLNSRVFETLKDLKVLNLAYNKINKIADEAF-YGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYID 344 (844)
T ss_dssp CCEEECTTCCC--CEECSCCSSSCCCCCEEEEESCCCCEECTTTT-TTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEE
T ss_pred ccEEECCCCcc--cccChhhhhcCCCCCEEECCCCcCCCCChHHh-cCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEE
Confidence 66666665532 22223345556666666666665543221111 2456666666666532111 55566666666
Q ss_pred cCCCccCChhHHHHHHhccCCCcEEecCCCCCCChhhhhhhccCCCceEEEecCCC-------------------CCChH
Q 007252 353 IESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCE-------------------NISDK 413 (611)
Q Consensus 353 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-------------------~~~~~ 413 (611)
++++. +....... ...+++|+.|++++ +.++. +..+++|+.|.++++. .+++.
T Consensus 345 L~~N~-i~~~~~~~-~~~l~~L~~L~Ls~-N~l~~-----i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l 416 (844)
T 3j0a_A 345 LQKNH-IAIIQDQT-FKFLEKLQTLDLRD-NALTT-----IHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENL 416 (844)
T ss_dssp CCSCC-CCCCCSSC-SCSCCCCCEEEEET-CCSCC-----CSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSS
T ss_pred CCCCC-CCccChhh-hcCCCCCCEEECCC-CCCCc-----ccCCCCcchhccCCCCcccccccccccceeecccCccccC
Confidence 66543 22211111 12456666666666 34332 1123444444444331 22222
Q ss_pred hHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhcCccCceecccccCCCCh-----HHHHHhhCCCCCCEEecCCCcccc
Q 007252 414 GLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKKLKKLNLSYCVNVTD-----RGMEHIRFIEDLSDLELRGLTKIT 488 (611)
Q Consensus 414 ~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~-----~~~~~l~~~~~L~~L~l~~c~~l~ 488 (611)
........+++|+.|+++++ .++..........+++|+.|+++++ .++. .....+..+++|+.|+++++ .++
T Consensus 417 ~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~ 493 (844)
T 3j0a_A 417 DILYFLLRVPHLQILILNQN-RFSSCSGDQTPSENPSLEQLFLGEN-MLQLAWETELCWDVFEGLSHLQVLYLNHN-YLN 493 (844)
T ss_dssp TTHHHHTTCTTCCEEEEESC-CCCCCCSSSSSCSCTTCCBCEEESC-CCSSSCCSCCCSSCSSCBCCEECCCCCHH-HHT
T ss_pred chhhhhhcCCccceeeCCCC-cccccccccccccCCccccccCCCC-ccccccccccchhhhcCcccccEEECCCC-ccc
Confidence 22222235666666666664 2321111111123466666666663 3321 11123445677777777763 343
Q ss_pred HHHHHHHHhcCCccCEeeccccCCCCHHHHHHHHhhCCCCCEEEeccCCCChhHHHHHhccccccccceeeccc
Q 007252 489 SAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQNLRQINLSYCALSDMALCMVMGNMTRLQDAKLVHLT 562 (611)
Q Consensus 489 ~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~l~~~~~L~~l~l~~~~ 562 (611)
.... ....++++|+.|++++| .++......+ .++|+.|++++|.++.... ..+++|+.+++.+.+
T Consensus 494 ~~~~-~~~~~l~~L~~L~Ls~N-~l~~l~~~~~---~~~L~~L~Ls~N~l~~~~~----~~~~~L~~l~l~~Np 558 (844)
T 3j0a_A 494 SLPP-GVFSHLTALRGLSLNSN-RLTVLSHNDL---PANLEILDISRNQLLAPNP----DVFVSLSVLDITHNK 558 (844)
T ss_dssp TCCT-TSSSSCCSCSEEEEESC-CCSSCCCCCC---CSCCCEEEEEEECCCCCCS----CCCSSCCEEEEEEEC
T ss_pred ccCh-hHccchhhhheeECCCC-CCCccChhhh---hccccEEECCCCcCCCCCh----hHhCCcCEEEecCCC
Confidence 2111 11235677888888887 6653221111 2678888888888766554 335577777776643
No 22
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.90 E-value=1e-23 Score=219.56 Aligned_cols=386 Identities=13% Similarity=0.092 Sum_probs=204.4
Q ss_pred CCccceeecccccccChHHHHHHHHcCCcCcEEeccCcccChHH-HHHhhhcCCCcEEEecCCCCCChhHHHHHHhcCCC
Q 007252 172 CVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDS-FCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPL 250 (611)
Q Consensus 172 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 250 (611)
+++|++|+++++ .+...... ....+++|++|++++|.+.... ...+..+++|++|++.++..++......+.. +++
T Consensus 73 l~~L~~L~Ls~n-~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~-l~~ 149 (549)
T 2z81_A 73 LGSLEHLDLSDN-HLSSLSSS-WFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAG-LTS 149 (549)
T ss_dssp CTTCCEEECTTS-CCCSCCHH-HHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTT-CCE
T ss_pred cccCCEEECCCC-ccCccCHH-HhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhc-ccc
Confidence 445555555544 22222211 1234556666666655444311 1235556666666666644233222122323 667
Q ss_pred ccEEEeccccccChHHHHHHHhcCCCCceeccCCCCCccchhHHHHhhcCCCccEEEccCcccChHHHH--HHHHhCCCC
Q 007252 251 LKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQ--TISFNCKSL 328 (611)
Q Consensus 251 L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~--~~~~~~~~L 328 (611)
|++|+++++..... .+..+..+++|++|++.++.. .......+..+++|+.|+++++.+....+. .+...+++|
T Consensus 150 L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~l~~n~~--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L 225 (549)
T 2z81_A 150 LNELEIKALSLRNY--QSQSLKSIRDIHHLTLHLSES--AFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPM 225 (549)
T ss_dssp EEEEEEEETTCCEE--CTTTTTTCSEEEEEEEECSBS--TTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCC
T ss_pred cCeeeccCCccccc--ChhhhhccccCceEecccCcc--cccchhhHhhcccccEEEccCCccccccccccchhhhhhcc
Confidence 77777766432111 122234566777777766532 222223345688899999988876542110 111246778
Q ss_pred cEEeeccCCCCCC--------CCCCCCCcEEecCCCcc-----------------------------CChh----HHHHH
Q 007252 329 VEIGLSKCLGVTN--------TDSCRGLVCLKIESCNM-----------------------------ITEK----GLYQL 367 (611)
Q Consensus 329 ~~L~l~~~~~~~~--------~~~~~~L~~L~l~~~~~-----------------------------~~~~----~~~~~ 367 (611)
+.|+++++..... ...+++|+.+++++|.. +... .+..+
T Consensus 226 ~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~ 305 (549)
T 2z81_A 226 KKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTV 305 (549)
T ss_dssp CEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHH
T ss_pred cceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhh
Confidence 8888876521110 23334444444444321 1000 01111
Q ss_pred HhccCCCcEEecCCCCCCChhhhhhhccCCCceEEEecCCCCCChHhHHHH--HhcCCCCcEEeccCCCCCCHHH-HHHH
Q 007252 368 GSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYI--ASNCLRIQGLDLYKCSGIGDDG-LAAL 444 (611)
Q Consensus 368 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l--~~~~~~L~~L~l~~~~~~~~~~-~~~~ 444 (611)
....++|++|++++ +.+.......+..+++|+.|+++++ .+++...... ...+++|++|++++| .++... ....
T Consensus 306 ~~~~~~L~~L~l~~-n~l~~ip~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~ 382 (549)
T 2z81_A 306 YSLLEKVKRITVEN-SKVFLVPCSFSQHLKSLEFLDLSEN-LMVEEYLKNSACKGAWPSLQTLVLSQN-HLRSMQKTGEI 382 (549)
T ss_dssp HHHSTTCCEEEEES-SCCCCCCHHHHHHCTTCCEEECCSS-CCCHHHHHHHTCTTSSTTCCEEECTTS-CCCCHHHHHHH
T ss_pred hhhcccceEEEecc-CccccCCHHHHhcCccccEEEccCC-ccccccccchhhhhccccCcEEEccCC-cccccccchhh
Confidence 22345677777766 4454333333346777888888776 5554332221 235677888888876 444332 2233
Q ss_pred HhcCccCceecccccCCCChHHHHHhhCCCCCCEEecCCCccccHHHHHHHHhcCCccCEeeccccCCCCHHHHHHHHhh
Q 007252 445 SNGCKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYY 524 (611)
Q Consensus 445 ~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~ 524 (611)
...+++|++|++++| .++.. ...+..+++|++|++++| .++... ..-.++|+.|++++| .++.. ...
T Consensus 383 ~~~l~~L~~L~Ls~N-~l~~l-p~~~~~~~~L~~L~Ls~N-~l~~l~----~~~~~~L~~L~Ls~N-~l~~~-----~~~ 449 (549)
T 2z81_A 383 LLTLKNLTSLDISRN-TFHPM-PDSCQWPEKMRFLNLSST-GIRVVK----TCIPQTLEVLDVSNN-NLDSF-----SLF 449 (549)
T ss_dssp GGGCTTCCEEECTTC-CCCCC-CSCCCCCTTCCEEECTTS-CCSCCC----TTSCTTCSEEECCSS-CCSCC-----CCC
T ss_pred hhcCCCCCEEECCCC-CCccC-ChhhcccccccEEECCCC-Cccccc----chhcCCceEEECCCC-Chhhh-----ccc
Confidence 456778888888774 45421 123445677888888774 343211 001257888888888 66542 135
Q ss_pred CCCCCEEEeccCCCChhHHHHHhccccccccceeecccCCCHHHHHHHHhhcCCCccchhhh
Q 007252 525 SQNLRQINLSYCALSDMALCMVMGNMTRLQDAKLVHLTNCTREGFELALRSCCMRIKKVKLL 586 (611)
Q Consensus 525 ~~~L~~L~l~~~~l~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~c~~l~~l~l~ 586 (611)
+++|++|++++|.++..+. ...+++|+.|++.++ +++... ...+..+++|+.++++
T Consensus 450 l~~L~~L~Ls~N~l~~ip~---~~~l~~L~~L~Ls~N-~l~~~~--~~~~~~l~~L~~L~l~ 505 (549)
T 2z81_A 450 LPRLQELYISRNKLKTLPD---ASLFPVLLVMKISRN-QLKSVP--DGIFDRLTSLQKIWLH 505 (549)
T ss_dssp CTTCCEEECCSSCCSSCCC---GGGCTTCCEEECCSS-CCCCCC--TTGGGGCTTCCEEECC
T ss_pred CChhcEEECCCCccCcCCC---cccCccCCEEecCCC-ccCCcC--HHHHhcCcccCEEEec
Confidence 6888888888888774432 356788888888776 333211 1112347788888875
No 23
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.88 E-value=1e-21 Score=199.23 Aligned_cols=342 Identities=18% Similarity=0.215 Sum_probs=185.2
Q ss_pred CCCCcEEeccCCCCCChHHHHHHHhcCCccceeecccccccChHHHHHHHHcCCcCcEEeccCcccChHHHHHhhhcCCC
Q 007252 146 ASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATLAKL 225 (611)
Q Consensus 146 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 225 (611)
+++++.|++.++ .+.. +..+ ..+++|++|+++++ .+..... ...+++|++|+++++.+..... +..+++|
T Consensus 45 l~~l~~L~l~~~-~i~~--l~~~-~~l~~L~~L~Ls~n-~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L 114 (466)
T 1o6v_A 45 LDQVTTLQADRL-GIKS--IDGV-EYLNNLTQINFSNN-QLTDITP---LKNLTKLVDILMNNNQIADITP--LANLTNL 114 (466)
T ss_dssp HHTCCEEECCSS-CCCC--CTTG-GGCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSSCCCCCGG--GTTCTTC
T ss_pred hccccEEecCCC-CCcc--Ccch-hhhcCCCEEECCCC-ccCCchh---hhccccCCEEECCCCccccChh--hcCCCCC
Confidence 478999999885 3333 1222 34899999999987 4443322 4578899999999997765433 8889999
Q ss_pred cEEEecCCCCCChhHHHHHHhcCCCccEEEeccccccChHHHHHHHhcCCCCceeccCCCCCccchhHHHHhhcCCCccE
Q 007252 226 ESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEA 305 (611)
Q Consensus 226 ~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~ 305 (611)
++|+++++. ++.... + ..+++|++|+++++...... .+..+++|++|++.+... . ...+..+++|+.
T Consensus 115 ~~L~L~~n~-l~~~~~--~-~~l~~L~~L~l~~n~l~~~~----~~~~l~~L~~L~l~~~~~---~--~~~~~~l~~L~~ 181 (466)
T 1o6v_A 115 TGLTLFNNQ-ITDIDP--L-KNLTNLNRLELSSNTISDIS----ALSGLTSLQQLSFGNQVT---D--LKPLANLTTLER 181 (466)
T ss_dssp CEEECCSSC-CCCCGG--G-TTCTTCSEEEEEEEEECCCG----GGTTCTTCSEEEEEESCC---C--CGGGTTCTTCCE
T ss_pred CEEECCCCC-CCCChH--H-cCCCCCCEEECCCCccCCCh----hhccCCcccEeecCCccc---C--chhhccCCCCCE
Confidence 999999864 443322 3 44899999999886543322 256678888888864321 1 123777888888
Q ss_pred EEccCcccChHHHHHHHHhCCCCcEEeeccCCCCCC--CCCCCCCcEEecCCCccCChhHHHHHHhccCCCcEEecCCCC
Q 007252 306 ITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTN--TDSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCN 383 (611)
Q Consensus 306 L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 383 (611)
|+++++.+.... . ...+++|++|+++++..... ...+++|+.|+++++. +.+.. . ...+++|++|++++ +
T Consensus 182 L~l~~n~l~~~~--~-l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~-l~~~~--~-l~~l~~L~~L~l~~-n 253 (466)
T 1o6v_A 182 LDISSNKVSDIS--V-LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQ-LKDIG--T-LASLTNLTDLDLAN-N 253 (466)
T ss_dssp EECCSSCCCCCG--G-GGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSC-CCCCG--G-GGGCTTCSEEECCS-S
T ss_pred EECcCCcCCCCh--h-hccCCCCCEEEecCCcccccccccccCCCCEEECCCCC-cccch--h-hhcCCCCCEEECCC-C
Confidence 888888765432 1 23567777777776632211 3445555555555543 22111 1 12445555555555 3
Q ss_pred CCChhhhhhhccCCCceEEEecCCCCCChHhHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhcCccCceecccccCCCC
Q 007252 384 GVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKKLKKLNLSYCVNVT 463 (611)
Q Consensus 384 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 463 (611)
.+.... .+..+++|+.|+++++ .++.... ...+++|++|++++| .++... . ...+++|+.|++++| .++
T Consensus 254 ~l~~~~--~~~~l~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L~L~~n-~l~~~~--~-~~~l~~L~~L~L~~n-~l~ 322 (466)
T 1o6v_A 254 QISNLA--PLSGLTKLTELKLGAN-QISNISP---LAGLTALTNLELNEN-QLEDIS--P-ISNLKNLTYLTLYFN-NIS 322 (466)
T ss_dssp CCCCCG--GGTTCTTCSEEECCSS-CCCCCGG---GTTCTTCSEEECCSS-CCSCCG--G-GGGCTTCSEEECCSS-CCS
T ss_pred ccccch--hhhcCCCCCEEECCCC-ccCcccc---ccCCCccCeEEcCCC-cccCch--h-hcCCCCCCEEECcCC-cCC
Confidence 333221 1444555555555554 3322211 124455555555554 222111 1 233455555555553 233
Q ss_pred hHHHHHhhCCCCCCEEecCCCccccHHHHHHHHhcCCccCEeeccccCCCCHHHHHHHHhhCCCCCEEEeccCCCC
Q 007252 464 DRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQNLRQINLSYCALS 539 (611)
Q Consensus 464 ~~~~~~l~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~~~l~ 539 (611)
+... +..+++|+.|++++| .+++. . ....+++|+.|++++| .+++... ...+++|+.|++++|+++
T Consensus 323 ~~~~--~~~l~~L~~L~l~~n-~l~~~--~-~l~~l~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L~l~~n~~~ 388 (466)
T 1o6v_A 323 DISP--VSSLTKLQRLFFYNN-KVSDV--S-SLANLTNINWLSAGHN-QISDLTP---LANLTRITQLGLNDQAWT 388 (466)
T ss_dssp CCGG--GGGCTTCCEEECCSS-CCCCC--G-GGTTCTTCCEEECCSS-CCCBCGG---GTTCTTCCEEECCCEEEE
T ss_pred Cchh--hccCccCCEeECCCC-ccCCc--h-hhccCCCCCEEeCCCC-ccCccch---hhcCCCCCEEeccCCccc
Confidence 2221 344555555555553 23321 1 1223455555555555 3332211 223455555555555443
No 24
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.88 E-value=3.7e-21 Score=187.62 Aligned_cols=299 Identities=17% Similarity=0.217 Sum_probs=169.0
Q ss_pred cCCcCcEEeccCcccChHHHHHhhhcCCCcEEEecCCCCCChhHHHHHHhcCCCccEEEeccccccChHHHHHHHhcCCC
Q 007252 197 KCLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSG 276 (611)
Q Consensus 197 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~ 276 (611)
.+++|++|+++++.+... ..+..+++|++|+++++. +++... ...+++|++|+++++.....
T Consensus 42 ~l~~L~~L~l~~~~i~~~--~~~~~~~~L~~L~l~~n~-i~~~~~---~~~l~~L~~L~L~~n~i~~~------------ 103 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASI--QGIEYLTNLEYLNLNGNQ-ITDISP---LSNLVKLTNLYIGTNKITDI------------ 103 (347)
T ss_dssp HHTTCSEEECCSSCCCCC--TTGGGCTTCCEEECCSSC-CCCCGG---GTTCTTCCEEECCSSCCCCC------------
T ss_pred hcccccEEEEeCCccccc--hhhhhcCCccEEEccCCc-cccchh---hhcCCcCCEEEccCCcccCc------------
Confidence 346677777777655432 235566667777766643 332221 22356666666655432211
Q ss_pred CceeccCCCCCccchhHHHHhhcCCCccEEEccCcccChHHHHHHHHhCCCCcEEeeccCCCCCC---CCCCCCCcEEec
Q 007252 277 LLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTN---TDSCRGLVCLKI 353 (611)
Q Consensus 277 L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~L~~L~l 353 (611)
..+..+++|++|+++++.+..... ...+++|++|+++++..... +..+++|+.|++
T Consensus 104 ------------------~~~~~l~~L~~L~l~~n~i~~~~~---~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l 162 (347)
T 4fmz_A 104 ------------------SALQNLTNLRELYLNEDNISDISP---LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTV 162 (347)
T ss_dssp ------------------GGGTTCTTCSEEECTTSCCCCCGG---GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEEC
T ss_pred ------------------hHHcCCCcCCEEECcCCcccCchh---hccCCceeEEECCCCCCcccccchhhCCCCcEEEe
Confidence 123444455555555444432211 22455555555555543333 455566666666
Q ss_pred CCCccCChhHHHHHHhccCCCcEEecCCCCCCChhhhhhhccCCCceEEEecCCCCCChHhHHHHHhcCCCCcEEeccCC
Q 007252 354 ESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKC 433 (611)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 433 (611)
+++....... ...+++|++|++++ +.+.+.. .+..+++|+.+.++++ .+++... ...+++|++|++++|
T Consensus 163 ~~~~~~~~~~----~~~l~~L~~L~l~~-n~l~~~~--~~~~l~~L~~L~l~~n-~l~~~~~---~~~~~~L~~L~l~~n 231 (347)
T 4fmz_A 163 TESKVKDVTP----IANLTDLYSLSLNY-NQIEDIS--PLASLTSLHYFTAYVN-QITDITP---VANMTRLNSLKIGNN 231 (347)
T ss_dssp CSSCCCCCGG----GGGCTTCSEEECTT-SCCCCCG--GGGGCTTCCEEECCSS-CCCCCGG---GGGCTTCCEEECCSS
T ss_pred cCCCcCCchh----hccCCCCCEEEccC-Ccccccc--cccCCCccceeecccC-CCCCCch---hhcCCcCCEEEccCC
Confidence 6654222111 33667788888777 4554332 2566777777777776 4443222 236777788887776
Q ss_pred CCCCHHHHHHHHhcCccCceecccccCCCChHHHHHhhCCCCCCEEecCCCccccHHHHHHHHhcCCccCEeeccccCCC
Q 007252 434 SGIGDDGLAALSNGCKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKI 513 (611)
Q Consensus 434 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l 513 (611)
.++.... ...+++|++|++++| .++.. ..+..+++|+.|++++| .+++.. ....+++|+.|++++| .+
T Consensus 232 -~l~~~~~---~~~l~~L~~L~l~~n-~l~~~--~~~~~l~~L~~L~l~~n-~l~~~~---~~~~l~~L~~L~L~~n-~l 299 (347)
T 4fmz_A 232 -KITDLSP---LANLSQLTWLEIGTN-QISDI--NAVKDLTKLKMLNVGSN-QISDIS---VLNNLSQLNSLFLNNN-QL 299 (347)
T ss_dssp -CCCCCGG---GTTCTTCCEEECCSS-CCCCC--GGGTTCTTCCEEECCSS-CCCCCG---GGGGCTTCSEEECCSS-CC
T ss_pred -ccCCCcc---hhcCCCCCEEECCCC-ccCCC--hhHhcCCCcCEEEccCC-ccCCCh---hhcCCCCCCEEECcCC-cC
Confidence 3332221 345677778877774 45442 34566777888887774 444321 2345777778888777 66
Q ss_pred CHHHHHHHHhhCCCCCEEEeccCCCChhHHHHHhccccccccceeecc
Q 007252 514 DDSGFWALAYYSQNLRQINLSYCALSDMALCMVMGNMTRLQDAKLVHL 561 (611)
Q Consensus 514 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~l~~~~~L~~l~l~~~ 561 (611)
+......+.. +++|++|++++|++++... +..+++|+.|++.++
T Consensus 300 ~~~~~~~l~~-l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~N 343 (347)
T 4fmz_A 300 GNEDMEVIGG-LTNLTTLFLSQNHITDIRP---LASLSKMDSADFANQ 343 (347)
T ss_dssp CGGGHHHHHT-CTTCSEEECCSSSCCCCGG---GGGCTTCSEESSSCC
T ss_pred CCcChhHhhc-cccCCEEEccCCccccccC---hhhhhccceeehhhh
Confidence 6554444433 4777888887777665543 566777777777665
No 25
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.87 E-value=2.6e-21 Score=196.32 Aligned_cols=342 Identities=18% Similarity=0.164 Sum_probs=240.8
Q ss_pred CCCccEEeccCCCCCChhhhHHhhcCCCCcEEeccCCCCCChHHHHHHHhcCCccceeecccccccChHHHHHHHHcCCc
Q 007252 121 CPLLESVDLSYCCGFGDREAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLD 200 (611)
Q Consensus 121 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 200 (611)
++++++|++.++. +.. ...+..+++|++|+++++ .++.... ...+++|++|++.++ .+..... ...+++
T Consensus 45 l~~l~~L~l~~~~-i~~--l~~~~~l~~L~~L~Ls~n-~l~~~~~---~~~l~~L~~L~l~~n-~l~~~~~---~~~l~~ 113 (466)
T 1o6v_A 45 LDQVTTLQADRLG-IKS--IDGVEYLNNLTQINFSNN-QLTDITP---LKNLTKLVDILMNNN-QIADITP---LANLTN 113 (466)
T ss_dssp HHTCCEEECCSSC-CCC--CTTGGGCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSS-CCCCCGG---GTTCTT
T ss_pred hccccEEecCCCC-Ccc--CcchhhhcCCCEEECCCC-ccCCchh---hhccccCCEEECCCC-ccccChh---hcCCCC
Confidence 4589999998764 332 234777899999999985 4444321 345899999999987 4433221 457899
Q ss_pred CcEEeccCcccChHHHHHhhhcCCCcEEEecCCCCCChhHHHHHHhcCCCccEEEeccccccChHHHHHHHhcCCCCcee
Q 007252 201 LKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQL 280 (611)
Q Consensus 201 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L 280 (611)
|++|+++++.+.... .+..+++|++|+++++. +... ..+ ..+++|++|++.+.. .... . +..+++|+.|
T Consensus 114 L~~L~L~~n~l~~~~--~~~~l~~L~~L~l~~n~-l~~~--~~~-~~l~~L~~L~l~~~~-~~~~---~-~~~l~~L~~L 182 (466)
T 1o6v_A 114 LTGLTLFNNQITDID--PLKNLTNLNRLELSSNT-ISDI--SAL-SGLTSLQQLSFGNQV-TDLK---P-LANLTTLERL 182 (466)
T ss_dssp CCEEECCSSCCCCCG--GGTTCTTCSEEEEEEEE-ECCC--GGG-TTCTTCSEEEEEESC-CCCG---G-GTTCTTCCEE
T ss_pred CCEEECCCCCCCCCh--HHcCCCCCCEEECCCCc-cCCC--hhh-ccCCcccEeecCCcc-cCch---h-hccCCCCCEE
Confidence 999999999766543 37889999999998864 3332 223 348999999987522 1111 1 5678899999
Q ss_pred ccCCCCCccchhHHHHhhcCCCccEEEccCcccChHHHHHHHHhCCCCcEEeeccCCCCCC--CCCCCCCcEEecCCCcc
Q 007252 281 DAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTN--TDSCRGLVCLKIESCNM 358 (611)
Q Consensus 281 ~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~L~~L~l~~~~~ 358 (611)
+++++.. .. ...+..+++|++|+++++.+..... ...+++|++|+++++..... +..+++|+.|+++++..
T Consensus 183 ~l~~n~l-~~---~~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l 255 (466)
T 1o6v_A 183 DISSNKV-SD---ISVLAKLTNLESLIATNNQISDITP---LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQI 255 (466)
T ss_dssp ECCSSCC-CC---CGGGGGCTTCSEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCC
T ss_pred ECcCCcC-CC---ChhhccCCCCCEEEecCCccccccc---ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCcc
Confidence 9988854 22 2347788999999999987664322 33688999999998743222 67788999999998753
Q ss_pred CChhHHHHHHhccCCCcEEecCCCCCCChhhhhhhccCCCceEEEecCCCCCChHhHHHHHhcCCCCcEEeccCCCCCCH
Q 007252 359 ITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGD 438 (611)
Q Consensus 359 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~ 438 (611)
-.... ...+++|++|++++ +.++... .+..+++|+.|+++++ .+++... ...+++|++|++++| .+++
T Consensus 256 ~~~~~----~~~l~~L~~L~l~~-n~l~~~~--~~~~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~L~~n-~l~~ 323 (466)
T 1o6v_A 256 SNLAP----LSGLTKLTELKLGA-NQISNIS--PLAGLTALTNLELNEN-QLEDISP---ISNLKNLTYLTLYFN-NISD 323 (466)
T ss_dssp CCCGG----GTTCTTCSEEECCS-SCCCCCG--GGTTCTTCSEEECCSS-CCSCCGG---GGGCTTCSEEECCSS-CCSC
T ss_pred ccchh----hhcCCCCCEEECCC-CccCccc--cccCCCccCeEEcCCC-cccCchh---hcCCCCCCEEECcCC-cCCC
Confidence 22222 34788999999998 5665433 2678899999999987 4544322 347899999999987 4443
Q ss_pred HHHHHHHhcCccCceecccccCCCChHHHHHhhCCCCCCEEecCCCccccHHHHHHHHhcCCccCEeeccccCCCC
Q 007252 439 DGLAALSNGCKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKID 514 (611)
Q Consensus 439 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~ 514 (611)
... ...+++|+.|++++| .+++. ..+..+++|+.|++++| .+++... ...+++|+.|++++| .++
T Consensus 324 ~~~---~~~l~~L~~L~l~~n-~l~~~--~~l~~l~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L~l~~n-~~~ 388 (466)
T 1o6v_A 324 ISP---VSSLTKLQRLFFYNN-KVSDV--SSLANLTNINWLSAGHN-QISDLTP---LANLTRITQLGLNDQ-AWT 388 (466)
T ss_dssp CGG---GGGCTTCCEEECCSS-CCCCC--GGGTTCTTCCEEECCSS-CCCBCGG---GTTCTTCCEEECCCE-EEE
T ss_pred chh---hccCccCCEeECCCC-ccCCc--hhhccCCCCCEEeCCCC-ccCccch---hhcCCCCCEEeccCC-ccc
Confidence 221 356899999999986 56654 46778999999999985 4544332 456899999999999 443
No 26
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.87 E-value=2.8e-23 Score=214.57 Aligned_cols=430 Identities=11% Similarity=0.077 Sum_probs=239.5
Q ss_pred CCccEEeccCCCCCChhhhHHhhcCCCCcEEeccCCCCCChHHHHHHHhcCCccceeecccccccChHHHHHHHHcCCcC
Q 007252 122 PLLESVDLSYCCGFGDREAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDL 201 (611)
Q Consensus 122 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 201 (611)
++|++|+++++. +.......+..+++|++|+++++ .++......+ ..+++|++|+++++ .++..... .+++|
T Consensus 21 ~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~Ls~N-~l~~lp~~----~l~~L 92 (520)
T 2z7x_B 21 QKTTILNISQNY-ISELWTSDILSLSKLRILIISHN-RIQYLDISVF-KFNQELEYLDLSHN-KLVKISCH----PTVNL 92 (520)
T ss_dssp TTCSEEECCSSC-CCCCCHHHHTTCTTCCEEECCSS-CCCEEEGGGG-TTCTTCCEEECCSS-CCCEEECC----CCCCC
T ss_pred ccccEEECCCCc-ccccChhhccccccccEEecCCC-ccCCcChHHh-hcccCCCEEecCCC-ceeecCcc----ccCCc
Confidence 799999999774 66666678889999999999985 5554322333 34899999999987 55432211 68899
Q ss_pred cEEeccCcccChH-HHHHhhhcCCCcEEEecCCCCCChhHHHHHHhcCCCc--cEEEeccccccChHHHHHHHhcCC-CC
Q 007252 202 KSLDVSYLKLTND-SFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLL--KTIFVSRCKFVSSTGLISVIRGHS-GL 277 (611)
Q Consensus 202 ~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L--~~L~l~~~~~~~~~~l~~~~~~~~-~L 277 (611)
++|++++|.+... ....+..+++|++|+++++. ++...+ ..+++| +.|+++++........+..+..+. +.
T Consensus 93 ~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~~~~----~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~ 167 (520)
T 2z7x_B 93 KHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH-LEKSSV----LPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTES 167 (520)
T ss_dssp SEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS-CCGGGG----GGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEE
T ss_pred cEEeccCCccccccchhhhccCCcceEEEecCcc-cchhhc----cccccceeeEEEeecccccccccccccccccccce
Confidence 9999999977653 23568889999999999854 554332 236677 999998864310000111111111 12
Q ss_pred ceeccCCCCCccchhHHHHhhcCCCccEEEccCcc-------cChHHHHHHHHhCCCCcEEeeccCCCCCC-------CC
Q 007252 278 LQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGAR-------ISDSCFQTISFNCKSLVEIGLSKCLGVTN-------TD 343 (611)
Q Consensus 278 ~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-------~~~~~l~~~~~~~~~L~~L~l~~~~~~~~-------~~ 343 (611)
..+++.++.. ........+..+++|+.++++++. +. ..+.. ...+++|+.|+++++..... ..
T Consensus 168 l~l~l~~n~~-~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~~~-l~~l~~L~~L~l~~~~l~~~~~~~~~~~~ 244 (520)
T 2z7x_B 168 LHIVFPTNKE-FHFILDVSVKTVANLELSNIKCVLEDNKCSYFL-SILAK-LQTNPKLSNLTLNNIETTWNSFIRILQLV 244 (520)
T ss_dssp EEEECCSSSC-CCCCCCCCCTTCSEEEECCEEECCSTTTTHHHH-HHHHG-GGGCTTCCEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEeccCcc-hhhhhhhhhhcccceeeccccccccccccceee-cchhh-hccccchhhccccccccCHHHHHHHHHHh
Confidence 2344444432 222223345567788888888764 11 12222 23566777777765421100 00
Q ss_pred CCCCCcEEecCCCccCChhHHHHH----HhccCCCcEEecCCCCCCC--hhhhhhhccCCCceEEEecCCCCCChHhHHH
Q 007252 344 SCRGLVCLKIESCNMITEKGLYQL----GSFCLRLEEIDLTDCNGVN--DKGLEYLSRCSELLFLKLGLCENISDKGLFY 417 (611)
Q Consensus 344 ~~~~L~~L~l~~~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~--~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 417 (611)
..++|+.|+++++.. .+.....+ ...+++|+.+++++ +.+. ...+..+....+|+.|+++++ .+.....
T Consensus 245 ~~~~L~~L~l~~n~l-~~~~p~~~~~~~~~~l~~L~~l~l~~-n~~~~p~~~~~~~~~~~~L~~L~l~~n-~l~~~~~-- 319 (520)
T 2z7x_B 245 WHTTVWYFSISNVKL-QGQLDFRDFDYSGTSLKALSIHQVVS-DVFGFPQSYIYEIFSNMNIKNFTVSGT-RMVHMLC-- 319 (520)
T ss_dssp HTSSCSEEEEEEEEE-ESCCCCCCCCCCSCCCCEEEEEEEEE-CCCCSCTHHHHHHHHTCCCSEEEEESS-CCCCCCC--
T ss_pred hhCcccEEEeecccc-cCccccchhhcccccCceeEeccccc-cceecchhhhhcccccCceeEEEcCCC-ccccccc--
Confidence 123555555554321 10000000 01344445555544 2221 011111112245666666665 2222110
Q ss_pred HHhcCCCCcEEeccCCCCCCHHHHHHHHhcCccCceecccccCCCChH--HHHHhhCCCCCCEEecCCCccccHHHHHHH
Q 007252 418 IASNCLRIQGLDLYKCSGIGDDGLAALSNGCKKLKKLNLSYCVNVTDR--GMEHIRFIEDLSDLELRGLTKITSAGLTAL 495 (611)
Q Consensus 418 l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~--~~~~l~~~~~L~~L~l~~c~~l~~~~~~~~ 495 (611)
...+++|++|++++| .++...... ...+++|++|+++++ .++.. ....+..+++|+.|+++++ .++.......
T Consensus 320 -~~~l~~L~~L~Ls~n-~l~~~~~~~-~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~l~~L~~L~Ls~N-~l~~~l~~~~ 394 (520)
T 2z7x_B 320 -PSKISPFLHLDFSNN-LLTDTVFEN-CGHLTELETLILQMN-QLKELSKIAEMTTQMKSLQQLDISQN-SVSYDEKKGD 394 (520)
T ss_dssp -CSSCCCCCEEECCSS-CCCTTTTTT-CCCCSSCCEEECCSS-CCCBHHHHHHHHTTCTTCCEEECCSS-CCBCCGGGCS
T ss_pred -hhhCCcccEEEeECC-ccChhhhhh-hccCCCCCEEEccCC-ccCccccchHHHhhCCCCCEEECCCC-cCCcccccch
Confidence 135677888888776 444322221 245678888888774 56652 2245667788888888774 4443111111
Q ss_pred HhcCCccCEeeccccCCCCHHHHHHHHhhCCCCCEEEeccCCCChhHHHHHhccccccccceeecccCCCHHHHHHHHhh
Q 007252 496 AAGCKRLADLDLKHCAKIDDSGFWALAYYSQNLRQINLSYCALSDMALCMVMGNMTRLQDAKLVHLTNCTREGFELALRS 575 (611)
Q Consensus 496 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~ 575 (611)
...+++|+.|++++| .++......+ .++|+.|++++|.++..+. .+..+++|+.|++.++ +++. +....+.
T Consensus 395 ~~~l~~L~~L~Ls~N-~l~~~~~~~l---~~~L~~L~Ls~N~l~~ip~--~~~~l~~L~~L~L~~N-~l~~--l~~~~~~ 465 (520)
T 2z7x_B 395 CSWTKSLLSLNMSSN-ILTDTIFRCL---PPRIKVLDLHSNKIKSIPK--QVVKLEALQELNVASN-QLKS--VPDGIFD 465 (520)
T ss_dssp CCCCTTCCEEECCSS-CCCGGGGGSC---CTTCCEEECCSSCCCCCCG--GGGGCTTCCEEECCSS-CCCC--CCTTTTT
T ss_pred hccCccCCEEECcCC-CCCcchhhhh---cccCCEEECCCCcccccch--hhhcCCCCCEEECCCC-cCCc--cCHHHhc
Confidence 234677888888888 6653221111 1578888888888775443 3457788888888776 3332 1111234
Q ss_pred cCCCccchhhh
Q 007252 576 CCMRIKKVKLL 586 (611)
Q Consensus 576 ~c~~l~~l~l~ 586 (611)
.+++|+.+++.
T Consensus 466 ~l~~L~~L~l~ 476 (520)
T 2z7x_B 466 RLTSLQKIWLH 476 (520)
T ss_dssp TCTTCCEEECC
T ss_pred cCCcccEEECc
Confidence 47778887775
No 27
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.87 E-value=5e-23 Score=214.30 Aligned_cols=455 Identities=15% Similarity=0.108 Sum_probs=277.2
Q ss_pred CCcEEeccCCCCCChhhHHHHhhhhhhhhccCCceEEeccccCCChHHHHHHHHhCCCccEEeccCCCCCChhhhHHhhc
Q 007252 66 YIKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREAAALSF 145 (611)
Q Consensus 66 ~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~ 145 (611)
..+.++++++ .++. + +....+++++|+++++. +.......+ ..+++|++|+++++ .+.......+..
T Consensus 32 ~~~~l~ls~~-~L~~-----i----p~~~~~~L~~L~Ls~N~-i~~~~~~~~-~~l~~L~~L~Ls~N-~l~~~~~~~~~~ 98 (562)
T 3a79_B 32 LESMVDYSNR-NLTH-----V----PKDLPPRTKALSLSQNS-ISELRMPDI-SFLSELRVLRLSHN-RIRSLDFHVFLF 98 (562)
T ss_dssp -CCEEECTTS-CCCS-----C----CTTSCTTCCEEECCSSC-CCCCCGGGT-TTCTTCCEEECCSC-CCCEECTTTTTT
T ss_pred CCcEEEcCCC-CCcc-----C----CCCCCCCcCEEECCCCC-ccccChhhh-ccCCCccEEECCCC-CCCcCCHHHhCC
Confidence 3467777764 2322 2 23344788888888873 332222222 36788888888866 466655667777
Q ss_pred CCCCcEEeccCCCCCChHHHHHHHhcCCccceeecccccccChHHHHHHHHcCCcCcEEeccCcccChHHHHHhhhcCCC
Q 007252 146 ASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATLAKL 225 (611)
Q Consensus 146 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 225 (611)
+++|++|+++++ .++..... .+++|++|+++++ .+...........+++|++|+++++.+.... +..+++|
T Consensus 99 l~~L~~L~Ls~N-~l~~lp~~----~l~~L~~L~Ls~N-~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~---~~~l~~L 169 (562)
T 3a79_B 99 NQDLEYLDVSHN-RLQNISCC----PMASLRHLDLSFN-DFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD---LLPVAHL 169 (562)
T ss_dssp CTTCCEEECTTS-CCCEECSC----CCTTCSEEECCSS-CCSBCCCCGGGGGCTTCCEEEEECSBCCTTT---TGGGTTS
T ss_pred CCCCCEEECCCC-cCCccCcc----ccccCCEEECCCC-CccccCchHhhcccCcccEEecCCCccccCc---hhhhhhc
Confidence 888888888874 44432111 4788888888876 4433222122346778888888888766533 3444444
Q ss_pred --cEEEecCCCCC-ChhHHHHHHhcCCCccE--EEeccccccChHHHHHHHhcCCCCceeccCCCCCc--cchhHHHHhh
Q 007252 226 --ESLVMVGCPCV-DDTGLRFLESGCPLLKT--IFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSE--LSTTLLHHMR 298 (611)
Q Consensus 226 --~~L~l~~~~~~-~~~~~~~l~~~~~~L~~--L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~l~ 298 (611)
++|+++++... +......+.. +. .+. +++..+.... .........+++|+.+++.++... ........+.
T Consensus 170 ~L~~L~L~~n~l~~~~~~~~~l~~-l~-~~~l~l~l~~n~~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~ 246 (562)
T 3a79_B 170 HLSCILLDLVSYHIKGGETESLQI-PN-TTVLHLVFHPNSLFS-VQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELT 246 (562)
T ss_dssp CEEEEEEEESSCCCCSSSCCEEEE-CC-EEEEEEEECSSSCCC-CCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHH
T ss_pred eeeEEEeecccccccccCcccccc-cC-cceEEEEecCccchh-hhhhhcccccceEEEecccccccccchHHHHHHHHh
Confidence 88888765320 1111111111 11 112 2223221111 000111234567888888775320 1233456778
Q ss_pred cCCCccEEEccCcccChHHHHHHHH--hCCCCcEEeeccCCCC---CC-C--CCCCCCcEEecCC---Cc-cCChhHHHH
Q 007252 299 DLKNLEAITMDGARISDSCFQTISF--NCKSLVEIGLSKCLGV---TN-T--DSCRGLVCLKIES---CN-MITEKGLYQ 366 (611)
Q Consensus 299 ~~~~L~~L~l~~~~~~~~~l~~~~~--~~~~L~~L~l~~~~~~---~~-~--~~~~~L~~L~l~~---~~-~~~~~~~~~ 366 (611)
.+++|+.+++.++.+....+..+.. ..++|++|+++++... .. . ...++|+.|.+.+ +. .+....+..
T Consensus 247 ~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~ 326 (562)
T 3a79_B 247 RGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYS 326 (562)
T ss_dssp SCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHH
T ss_pred ccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhh
Confidence 8999999999988888766554432 3459999999988522 21 1 0114455554433 22 122233333
Q ss_pred HHhccCCCcEEecCCCCCCChhhhhhhccCCCceEEEecCCCCCChHhHHHHHhcCCCCcEEeccCCCCCCHH-HHHHHH
Q 007252 367 LGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDD-GLAALS 445 (611)
Q Consensus 367 ~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~-~~~~~~ 445 (611)
+. ..++|++|++++ +.+.... ....+++|++|+++++ .+++.....+ ..+++|++|+++++ .++.. .+....
T Consensus 327 ~~-~~~~L~~L~l~~-n~~~~~~--~~~~l~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~L~~N-~l~~~~~~~~~~ 399 (562)
T 3a79_B 327 VF-AEMNIKMLSISD-TPFIHMV--CPPSPSSFTFLNFTQN-VFTDSVFQGC-STLKRLQTLILQRN-GLKNFFKVALMT 399 (562)
T ss_dssp HH-HTCCCSEEEEES-SCCCCCC--CCSSCCCCCEEECCSS-CCCTTTTTTC-CSCSSCCEEECCSS-CCCBTTHHHHTT
T ss_pred hh-ccCcceEEEccC-CCccccc--CccCCCCceEEECCCC-ccccchhhhh-cccCCCCEEECCCC-CcCCcccchhhh
Confidence 33 236899999998 4554322 2257889999999997 5654332222 36899999999996 55532 333334
Q ss_pred hcCccCceecccccCCCCh-HHHHHhhCCCCCCEEecCCCccccHHHHHHHHhcC-CccCEeeccccCCCCHHHHHHHHh
Q 007252 446 NGCKKLKKLNLSYCVNVTD-RGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGC-KRLADLDLKHCAKIDDSGFWALAY 523 (611)
Q Consensus 446 ~~~~~L~~L~l~~c~~l~~-~~~~~l~~~~~L~~L~l~~c~~l~~~~~~~~~~~~-~~L~~L~l~~c~~l~~~~~~~~~~ 523 (611)
..+++|+.|+++++ .++. .....+..+++|+.|++++| .++... ...+ ++|+.|++++| .++... ....
T Consensus 400 ~~l~~L~~L~l~~N-~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~----~~~l~~~L~~L~L~~N-~l~~ip--~~~~ 470 (562)
T 3a79_B 400 KNMSSLETLDVSLN-SLNSHAYDRTCAWAESILVLNLSSN-MLTGSV----FRCLPPKVKVLDLHNN-RIMSIP--KDVT 470 (562)
T ss_dssp TTCTTCCEEECTTS-CCBSCCSSCCCCCCTTCCEEECCSS-CCCGGG----GSSCCTTCSEEECCSS-CCCCCC--TTTT
T ss_pred cCCCCCCEEECCCC-cCCCccChhhhcCcccCCEEECCCC-CCCcch----hhhhcCcCCEEECCCC-cCcccC--hhhc
Confidence 66899999999995 4554 33334567899999999995 565422 2334 69999999999 776322 2122
Q ss_pred hCCCCCEEEeccCCCChhHHHHHhccccccccceeeccc
Q 007252 524 YSQNLRQINLSYCALSDMALCMVMGNMTRLQDAKLVHLT 562 (611)
Q Consensus 524 ~~~~L~~L~l~~~~l~~~~~~~~l~~~~~L~~l~l~~~~ 562 (611)
.+++|++|++++|.++..+. ..+..+++|+.|++.+++
T Consensus 471 ~l~~L~~L~L~~N~l~~l~~-~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 471 HLQALQELNVASNQLKSVPD-GVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp SSCCCSEEECCSSCCCCCCT-TSTTTCTTCCCEECCSCC
T ss_pred CCCCCCEEECCCCCCCCCCH-HHHhcCCCCCEEEecCCC
Confidence 57899999999999887665 447889999999998775
No 28
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.86 E-value=1.7e-23 Score=223.32 Aligned_cols=344 Identities=12% Similarity=0.096 Sum_probs=199.4
Q ss_pred HHcCCcCcEEeccCcccChH-----------------HHHHhh--hcCCCcEEEecCCCCCChhHHHHHHhcCCCccEEE
Q 007252 195 CKKCLDLKSLDVSYLKLTND-----------------SFCSIA--TLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIF 255 (611)
Q Consensus 195 ~~~~~~L~~L~l~~~~~~~~-----------------~~~~l~--~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~ 255 (611)
...+++|+.|++++|.+... .+..+. .+++|++|++++|.... ..+..+.. +++|+.|+
T Consensus 444 l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~-~iP~~l~~-L~~L~~L~ 521 (876)
T 4ecn_A 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMT-QLPDFLYD-LPELQSLN 521 (876)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCC-SCCGGGGG-CSSCCEEE
T ss_pred HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCc-cChHHHhC-CCCCCEEE
Confidence 34567788888877766652 333444 77788888887764222 22223333 77888888
Q ss_pred eccccccChHHHHHHHh-------cCCCCceeccCCCCCccchhHHH--HhhcCCCccEEEccCcccChHHHHHHHHhCC
Q 007252 256 VSRCKFVSSTGLISVIR-------GHSGLLQLDAGHCFSELSTTLLH--HMRDLKNLEAITMDGARISDSCFQTISFNCK 326 (611)
Q Consensus 256 l~~~~~~~~~~l~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~~ 326 (611)
++++..++...++..+. .+++|+.|+++++.. . .... .+..+++|+.|+++++.+.. +. ....++
T Consensus 522 Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L--~-~ip~~~~l~~L~~L~~L~Ls~N~l~~--lp-~~~~L~ 595 (876)
T 4ecn_A 522 IACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL--E-EFPASASLQKMVKLGLLDCVHNKVRH--LE-AFGTNV 595 (876)
T ss_dssp CTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC--C-BCCCHHHHTTCTTCCEEECTTSCCCB--CC-CCCTTS
T ss_pred CcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC--C-ccCChhhhhcCCCCCEEECCCCCccc--ch-hhcCCC
Confidence 87764344322333333 334788888877753 2 3333 67777788888888777662 22 223567
Q ss_pred CCcEEeeccCCCC--CC-CCCCCC-CcEEecCCCccCChhHHHHHHhc--cCCCcEEecCCCCCCChhhh---hhhc--c
Q 007252 327 SLVEIGLSKCLGV--TN-TDSCRG-LVCLKIESCNMITEKGLYQLGSF--CLRLEEIDLTDCNGVNDKGL---EYLS--R 395 (611)
Q Consensus 327 ~L~~L~l~~~~~~--~~-~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~---~~l~--~ 395 (611)
+|+.|+++++... .. +..+++ |+.|+++++. +.. +...... .++|+.|++++ +.+..... ..+. .
T Consensus 596 ~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~-L~~--lp~~~~~~~~~~L~~L~Ls~-N~l~g~ip~l~~~l~~~~ 671 (876)
T 4ecn_A 596 KLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNK-LKY--IPNIFNAKSVYVMGSVDFSY-NKIGSEGRNISCSMDDYK 671 (876)
T ss_dssp EESEEECCSSCCSCCCTTSCEECTTCCEEECCSSC-CCS--CCSCCCTTCSSCEEEEECCS-SCTTTTSSSCSSCTTTCC
T ss_pred cceEEECcCCccccchHHHhhccccCCEEECcCCC-CCc--CchhhhccccCCCCEEECcC-CcCCCccccchhhhcccc
Confidence 7788888776422 11 556666 8888888765 331 1111111 23488888887 45543211 1111 3
Q ss_pred CCCceEEEecCCCCCChHhHHHHHhcCCCCcEEeccCCCCCCHHHHHHH------HhcCccCceecccccCCCChHHHHH
Q 007252 396 CSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAAL------SNGCKKLKKLNLSYCVNVTDRGMEH 469 (611)
Q Consensus 396 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~------~~~~~~L~~L~l~~c~~l~~~~~~~ 469 (611)
+++|+.|++++| .++... ..+...+++|+.|+++++ .++......+ ...|++|+.|+|++| .++... ..
T Consensus 672 ~~~L~~L~Ls~N-~L~~lp-~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp-~~ 746 (876)
T 4ecn_A 672 GINASTVTLSYN-EIQKFP-TELFATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLS-DD 746 (876)
T ss_dssp CCCEEEEECCSS-CCCSCC-HHHHHTTCCCSEEECCSC-CCSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCCC-GG
T ss_pred CCCcCEEEccCC-cCCccC-HHHHccCCCCCEEECCCC-cCCccChHHhccccccccccCCccEEECCCC-CCccch-HH
Confidence 457888888887 555322 223336788888888876 4431110000 112348888888885 565322 33
Q ss_pred hh--CCCCCCEEecCCCccccHHHHHHHHhcCCccCEeeccccC-----CCCHHHHHHHHhhCCCCCEEEeccCCCChhH
Q 007252 470 IR--FIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCA-----KIDDSGFWALAYYSQNLRQINLSYCALSDMA 542 (611)
Q Consensus 470 l~--~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~-----~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~ 542 (611)
+. .+++|+.|++++| .++. +......+++|+.|++++|+ .+... +......+++|+.|++++|.++..+
T Consensus 747 l~~~~l~~L~~L~Ls~N-~L~~--lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~-ip~~l~~L~~L~~L~Ls~N~L~~Ip 822 (876)
T 4ecn_A 747 FRATTLPYLSNMDVSYN-CFSS--FPTQPLNSSQLKAFGIRHQRDAEGNRILRQ-WPTGITTCPSLIQLQIGSNDIRKVD 822 (876)
T ss_dssp GSTTTCTTCCEEECCSS-CCSS--CCCGGGGCTTCCEEECCCCBCTTCCBCCCC-CCTTGGGCSSCCEEECCSSCCCBCC
T ss_pred hhhccCCCcCEEEeCCC-CCCc--cchhhhcCCCCCEEECCCCCCccccccccc-ChHHHhcCCCCCEEECCCCCCCccC
Confidence 43 6888888888884 4543 22223467888888887642 22211 1112234688888888888876554
Q ss_pred HHHHhccccccccceeecccC
Q 007252 543 LCMVMGNMTRLQDAKLVHLTN 563 (611)
Q Consensus 543 ~~~~l~~~~~L~~l~l~~~~~ 563 (611)
. . -.++|+.|++.+++-
T Consensus 823 ~--~--l~~~L~~LdLs~N~l 839 (876)
T 4ecn_A 823 E--K--LTPQLYILDIADNPN 839 (876)
T ss_dssp S--C--CCSSSCEEECCSCTT
T ss_pred H--h--hcCCCCEEECCCCCC
Confidence 3 2 236888888887753
No 29
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.86 E-value=1.6e-20 Score=183.17 Aligned_cols=307 Identities=18% Similarity=0.186 Sum_probs=151.8
Q ss_pred hhcCCCCcEEeccCCCCCChHHHHHHHhcCCccceeecccccccChHHHHHHHHcCCcCcEEeccCcccChHHHHHhhhc
Q 007252 143 LSFASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATL 222 (611)
Q Consensus 143 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~ 222 (611)
+..+++|++|++.++ .+... ..+ ..+++|++|+++++ .+++... ...+++|++|+++++.+... ..+..+
T Consensus 40 ~~~l~~L~~L~l~~~-~i~~~--~~~-~~~~~L~~L~l~~n-~i~~~~~---~~~l~~L~~L~L~~n~i~~~--~~~~~l 109 (347)
T 4fmz_A 40 QEELESITKLVVAGE-KVASI--QGI-EYLTNLEYLNLNGN-QITDISP---LSNLVKLTNLYIGTNKITDI--SALQNL 109 (347)
T ss_dssp HHHHTTCSEEECCSS-CCCCC--TTG-GGCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSSCCCCC--GGGTTC
T ss_pred chhcccccEEEEeCC-ccccc--hhh-hhcCCccEEEccCC-ccccchh---hhcCCcCCEEEccCCcccCc--hHHcCC
Confidence 345678888888874 33321 122 33677777777776 4433221 34567777777777755542 345666
Q ss_pred CCCcEEEecCCCCCChhHHHHHHhcCCCccEEEeccccccChHHHHHHHhcCCCCceeccCCCCCccchhHHHHhhcCCC
Q 007252 223 AKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKN 302 (611)
Q Consensus 223 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~ 302 (611)
++|++|+++++. +..... + ..+++|++|+++++...... ..+..+++
T Consensus 110 ~~L~~L~l~~n~-i~~~~~--~-~~l~~L~~L~l~~n~~~~~~-----------------------------~~~~~l~~ 156 (347)
T 4fmz_A 110 TNLRELYLNEDN-ISDISP--L-ANLTKMYSLNLGANHNLSDL-----------------------------SPLSNMTG 156 (347)
T ss_dssp TTCSEEECTTSC-CCCCGG--G-TTCTTCCEEECTTCTTCCCC-----------------------------GGGTTCTT
T ss_pred CcCCEEECcCCc-ccCchh--h-ccCCceeEEECCCCCCcccc-----------------------------cchhhCCC
Confidence 666666666643 322111 2 23555666665554322221 11334444
Q ss_pred ccEEEccCcccChHHHHHHHHhCCCCcEEeeccCCCCCCCCCCCCCcEEecCCCccCChhHHHHHHhccCCCcEEecCCC
Q 007252 303 LEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTDSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDC 382 (611)
Q Consensus 303 L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 382 (611)
|+.|++.++.+..... ...+++|++|+++++. +.+... ...+++|+.|++++
T Consensus 157 L~~L~l~~~~~~~~~~---~~~l~~L~~L~l~~n~---------------------l~~~~~---~~~l~~L~~L~l~~- 208 (347)
T 4fmz_A 157 LNYLTVTESKVKDVTP---IANLTDLYSLSLNYNQ---------------------IEDISP---LASLTSLHYFTAYV- 208 (347)
T ss_dssp CCEEECCSSCCCCCGG---GGGCTTCSEEECTTSC---------------------CCCCGG---GGGCTTCCEEECCS-
T ss_pred CcEEEecCCCcCCchh---hccCCCCCEEEccCCc---------------------cccccc---ccCCCccceeeccc-
Confidence 5555544443332111 1133444444444331 110000 12345555555555
Q ss_pred CCCChhhhhhhccCCCceEEEecCCCCCChHhHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhcCccCceecccccCCC
Q 007252 383 NGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKKLKKLNLSYCVNV 462 (611)
Q Consensus 383 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l 462 (611)
+.+++... +..+++|++|++++| .+++... ...+++|++|++++| .++.. . ....+++|++|++++| .+
T Consensus 209 n~l~~~~~--~~~~~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L~l~~n-~l~~~--~-~~~~l~~L~~L~l~~n-~l 277 (347)
T 4fmz_A 209 NQITDITP--VANMTRLNSLKIGNN-KITDLSP---LANLSQLTWLEIGTN-QISDI--N-AVKDLTKLKMLNVGSN-QI 277 (347)
T ss_dssp SCCCCCGG--GGGCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSS-CCCCC--G-GGTTCTTCCEEECCSS-CC
T ss_pred CCCCCCch--hhcCCcCCEEEccCC-ccCCCcc---hhcCCCCCEEECCCC-ccCCC--h-hHhcCCCcCEEEccCC-cc
Confidence 33333221 445555555555555 3332221 224566666666654 33321 1 1234566666666664 34
Q ss_pred ChHHHHHhhCCCCCCEEecCCCccccHHHHHHHHhcCCccCEeeccccCCCCHHHHHHHHhhCCCCCEEEeccCCCC
Q 007252 463 TDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQNLRQINLSYCALS 539 (611)
Q Consensus 463 ~~~~~~~l~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~~~l~ 539 (611)
++. ..+..+++|+.|++++| .++......+ ..+++|+.|++++| .++.... ...+++|++|++++|+++
T Consensus 278 ~~~--~~~~~l~~L~~L~L~~n-~l~~~~~~~l-~~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 278 SDI--SVLNNLSQLNSLFLNNN-QLGNEDMEVI-GGLTNLTTLFLSQN-HITDIRP---LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CCC--GGGGGCTTCSEEECCSS-CCCGGGHHHH-HTCTTCSEEECCSS-SCCCCGG---GGGCTTCSEESSSCC---
T ss_pred CCC--hhhcCCCCCCEEECcCC-cCCCcChhHh-hccccCCEEEccCC-ccccccC---hhhhhccceeehhhhccc
Confidence 433 23556677777777774 4544333333 34777777777777 4544321 344577777777777654
No 30
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.86 E-value=6.4e-22 Score=200.86 Aligned_cols=124 Identities=10% Similarity=0.011 Sum_probs=66.1
Q ss_pred hhcCCCccEEEccCcccChHHHHHHHHh--CCCCcEEeeccCCCCCCCCCCCCCcEEecCCCccCChhHHHHHHhccCCC
Q 007252 297 MRDLKNLEAITMDGARISDSCFQTISFN--CKSLVEIGLSKCLGVTNTDSCRGLVCLKIESCNMITEKGLYQLGSFCLRL 374 (611)
Q Consensus 297 l~~~~~L~~L~l~~~~~~~~~l~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 374 (611)
+..+++|++|+++++.+.......+... .++|+.|+++++...........+..+ ....+.. -..++|
T Consensus 208 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~--------~~~~~~~--~~~~~L 277 (455)
T 3v47_A 208 PFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDP--------DNFTFKG--LEASGV 277 (455)
T ss_dssp TTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCC--------CTTTTGG--GTTSCC
T ss_pred ccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccC--------ccccccc--ccccCc
Confidence 4456789999999988877665555433 367888888776433220000011000 0000000 023677
Q ss_pred cEEecCCCCCCChhhhhhhccCCCceEEEecCCCCCChHhHHHHHhcCCCCcEEeccCC
Q 007252 375 EEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKC 433 (611)
Q Consensus 375 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 433 (611)
++|++++ +.+.......+..+++|+.|+++++ .+++.....+. .+++|++|++++|
T Consensus 278 ~~L~l~~-n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~-~l~~L~~L~Ls~N 333 (455)
T 3v47_A 278 KTCDLSK-SKIFALLKSVFSHFTDLEQLTLAQN-EINKIDDNAFW-GLTHLLKLNLSQN 333 (455)
T ss_dssp CEEECCS-SCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTT-TCTTCCEEECCSS
T ss_pred eEEEecC-ccccccchhhcccCCCCCEEECCCC-cccccChhHhc-CcccCCEEECCCC
Confidence 7888877 5666555555666777777777765 44332221111 3455555555553
No 31
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.85 E-value=6.1e-23 Score=215.78 Aligned_cols=341 Identities=11% Similarity=0.075 Sum_probs=169.9
Q ss_pred HcCCcCcEEeccCcccChH-----------------HHHHhh--hcCCCcEEEecCCCCCChhHHHHHHhcCCCccEEEe
Q 007252 196 KKCLDLKSLDVSYLKLTND-----------------SFCSIA--TLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFV 256 (611)
Q Consensus 196 ~~~~~L~~L~l~~~~~~~~-----------------~~~~l~--~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l 256 (611)
..+++|++|+++++.+... .+..+. ++++|++|++++|. +....+..+.. +++|++|++
T Consensus 203 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~-l~~~~p~~l~~-l~~L~~L~L 280 (636)
T 4eco_A 203 MRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCP-NLTKLPTFLKA-LPEMQLINV 280 (636)
T ss_dssp GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCT-TCSSCCTTTTT-CSSCCEEEC
T ss_pred hcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCc-CCccChHHHhc-CCCCCEEEC
Confidence 3456666666666655542 333344 56666666666543 21111122222 566666666
Q ss_pred ccccccChHHHHHHHhcC------CCCceeccCCCCCccchhHHH--HhhcCCCccEEEccCcccC-hHHHHHHHHhCCC
Q 007252 257 SRCKFVSSTGLISVIRGH------SGLLQLDAGHCFSELSTTLLH--HMRDLKNLEAITMDGARIS-DSCFQTISFNCKS 327 (611)
Q Consensus 257 ~~~~~~~~~~l~~~~~~~------~~L~~L~l~~~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~-~~~l~~~~~~~~~ 327 (611)
+++..++...++..+..+ ++|++|++.++.. . .... .+..+++|+.|+++++.+. ... ....+++
T Consensus 281 s~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l--~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip---~~~~l~~ 354 (636)
T 4eco_A 281 ACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNL--K-TFPVETSLQKMKKLGMLECLYNQLEGKLP---AFGSEIK 354 (636)
T ss_dssp TTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCC--S-SCCCHHHHTTCTTCCEEECCSCCCEEECC---CCEEEEE
T ss_pred cCCCCCccccchHHHHhhhccccCCCCCEEECCCCcC--C-ccCchhhhccCCCCCEEeCcCCcCccchh---hhCCCCC
Confidence 665423331233333322 6666666666532 2 2222 5556666666666666544 111 1124456
Q ss_pred CcEEeeccCCC--CCC-CCCCCC-CcEEecCCCccCChhHHHHHHh--ccCCCcEEecCCCCCCChhhhhhhc-------
Q 007252 328 LVEIGLSKCLG--VTN-TDSCRG-LVCLKIESCNMITEKGLYQLGS--FCLRLEEIDLTDCNGVNDKGLEYLS------- 394 (611)
Q Consensus 328 L~~L~l~~~~~--~~~-~~~~~~-L~~L~l~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~l~------- 394 (611)
|++|+++++.. +.. +..+++ |+.|+++++. ++. +..... .+++|+.|++++ +.+.......+.
T Consensus 355 L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~-l~~--lp~~~~~~~l~~L~~L~Ls~-N~l~~~~p~~l~~~~~~~~ 430 (636)
T 4eco_A 355 LASLNLAYNQITEIPANFCGFTEQVENLSFAHNK-LKY--IPNIFDAKSVSVMSAIDFSY-NEIGSVDGKNFDPLDPTPF 430 (636)
T ss_dssp ESEEECCSSEEEECCTTSEEECTTCCEEECCSSC-CSS--CCSCCCTTCSSCEEEEECCS-SCTTTTTTCSSCTTCSSCC
T ss_pred CCEEECCCCccccccHhhhhhcccCcEEEccCCc-Ccc--cchhhhhcccCccCEEECcC-CcCCCcchhhhcccccccc
Confidence 66666665531 111 444555 6666666644 221 111111 123677777777 455544444444
Q ss_pred cCCCceEEEecCCCCCChHhHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHh-------cCccCceecccccCCCChHHH
Q 007252 395 RCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSN-------GCKKLKKLNLSYCVNVTDRGM 467 (611)
Q Consensus 395 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~-------~~~~L~~L~l~~c~~l~~~~~ 467 (611)
.+++|+.|+++++ .++.... .+...+++|++|+++++ .++..... ... .+++|+.|+++++ .++...
T Consensus 431 ~~~~L~~L~Ls~N-~l~~lp~-~~~~~l~~L~~L~Ls~N-~l~~i~~~-~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp- 504 (636)
T 4eco_A 431 KGINVSSINLSNN-QISKFPK-ELFSTGSPLSSINLMGN-MLTEIPKN-SLKDENENFKNTYLLTSIDLRFN-KLTKLS- 504 (636)
T ss_dssp CCCCEEEEECCSS-CCCSCCT-HHHHTTCCCSEEECCSS-CCSBCCSS-SSEETTEECTTGGGCCEEECCSS-CCCBCC-
T ss_pred cCCCCCEEECcCC-ccCcCCH-HHHccCCCCCEEECCCC-CCCCcCHH-HhccccccccccCCccEEECcCC-cCCccC-
Confidence 5567777777776 4442221 22235677777777765 33311100 001 1126777777773 455322
Q ss_pred HHhh--CCCCCCEEecCCCccccHHHHHHHHhcCCccCEeeccccC-----CCCHHHHHHHHhhCCCCCEEEeccCCCCh
Q 007252 468 EHIR--FIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCA-----KIDDSGFWALAYYSQNLRQINLSYCALSD 540 (611)
Q Consensus 468 ~~l~--~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~-----~l~~~~~~~~~~~~~~L~~L~l~~~~l~~ 540 (611)
..+. .+++|+.|+++++ .++. +......+++|+.|++++|. .+... +......+++|++|++++|.++.
T Consensus 505 ~~~~~~~l~~L~~L~Ls~N-~l~~--ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~ 580 (636)
T 4eco_A 505 DDFRATTLPYLVGIDLSYN-SFSK--FPTQPLNSSTLKGFGIRNQRDAQGNRTLRE-WPEGITLCPSLTQLQIGSNDIRK 580 (636)
T ss_dssp GGGSTTTCTTCCEEECCSS-CCSS--CCCGGGGCSSCCEEECCSCBCTTCCBCCCC-CCTTGGGCSSCCEEECCSSCCCB
T ss_pred hhhhhccCCCcCEEECCCC-CCCC--cChhhhcCCCCCEEECCCCcccccCccccc-ChHHHhcCCCCCEEECCCCcCCc
Confidence 2333 6777777777773 4443 22222346777777775432 22111 11112235777777777777655
Q ss_pred hHHHHHhccccccccceeeccc
Q 007252 541 MALCMVMGNMTRLQDAKLVHLT 562 (611)
Q Consensus 541 ~~~~~~l~~~~~L~~l~l~~~~ 562 (611)
.+. .+ .++|+.|++.+++
T Consensus 581 ip~--~~--~~~L~~L~Ls~N~ 598 (636)
T 4eco_A 581 VNE--KI--TPNISVLDIKDNP 598 (636)
T ss_dssp CCS--CC--CTTCCEEECCSCT
T ss_pred cCH--hH--hCcCCEEECcCCC
Confidence 443 12 2677777776664
No 32
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.85 E-value=9.2e-23 Score=217.70 Aligned_cols=323 Identities=12% Similarity=0.070 Sum_probs=190.2
Q ss_pred cCCcCcEEeccCcccChHHHHHhhhcCCCcEEEecCCCCCCh-hHHHHHHh------cCCCccEEEeccccccChHHHHH
Q 007252 197 KCLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDD-TGLRFLES------GCPLLKTIFVSRCKFVSSTGLIS 269 (611)
Q Consensus 197 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~l~~------~~~~L~~L~l~~~~~~~~~~l~~ 269 (611)
.+++|+.|++++|.+....+..+.++++|++|+++++..++. ..+..+.. .+++|+.|+++++... .++.
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~---~ip~ 565 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE---EFPA 565 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC---BCCC
T ss_pred cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC---ccCC
Confidence 566777777777755554455567777777777776543443 22222222 2357777777775432 2333
Q ss_pred --HHhcCCCCceeccCCCCCccchhHHHHhhcCCCccEEEccCcccChHHHHHHHHhCCC-CcEEeeccCCCCC--C-CC
Q 007252 270 --VIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKS-LVEIGLSKCLGVT--N-TD 343 (611)
Q Consensus 270 --~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~-L~~L~l~~~~~~~--~-~~ 343 (611)
.+..+++|+.|+++++.. . ... .+..+++|+.|+++++.+.. +......+++ |++|+++++.... . +.
T Consensus 566 ~~~l~~L~~L~~L~Ls~N~l--~-~lp-~~~~L~~L~~L~Ls~N~l~~--lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~ 639 (876)
T 4ecn_A 566 SASLQKMVKLGLLDCVHNKV--R-HLE-AFGTNVKLTDLKLDYNQIEE--IPEDFCAFTDQVEGLGFSHNKLKYIPNIFN 639 (876)
T ss_dssp HHHHTTCTTCCEEECTTSCC--C-BCC-CCCTTSEESEEECCSSCCSC--CCTTSCEECTTCCEEECCSSCCCSCCSCCC
T ss_pred hhhhhcCCCCCEEECCCCCc--c-cch-hhcCCCcceEEECcCCcccc--chHHHhhccccCCEEECcCCCCCcCchhhh
Confidence 456677777777777643 2 222 66667777777777776651 2211224566 7778777764221 1 22
Q ss_pred CC--CCCcEEecCCCccCChhH--HH-HHH-hccCCCcEEecCCCCCCChhhhhhhccCCCceEEEecCCCCCChHhHHH
Q 007252 344 SC--RGLVCLKIESCNMITEKG--LY-QLG-SFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFY 417 (611)
Q Consensus 344 ~~--~~L~~L~l~~~~~~~~~~--~~-~~~-~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 417 (611)
.. ++|+.|+++++. +.... +. .+. -.+++|+.|++++ +.++......+..+++|+.|+++++ .++......
T Consensus 640 ~~~~~~L~~L~Ls~N~-l~g~ip~l~~~l~~~~~~~L~~L~Ls~-N~L~~lp~~~~~~l~~L~~L~Ls~N-~L~~ip~~~ 716 (876)
T 4ecn_A 640 AKSVYVMGSVDFSYNK-IGSEGRNISCSMDDYKGINASTVTLSY-NEIQKFPTELFATGSPISTIILSNN-LMTSIPENS 716 (876)
T ss_dssp TTCSSCEEEEECCSSC-TTTTSSSCSSCTTTCCCCCEEEEECCS-SCCCSCCHHHHHTTCCCSEEECCSC-CCSCCCTTS
T ss_pred ccccCCCCEEECcCCc-CCCccccchhhhccccCCCcCEEEccC-CcCCccCHHHHccCCCCCEEECCCC-cCCccChHH
Confidence 22 348888887754 22110 00 000 0234788888888 5666443344457788888888886 444211111
Q ss_pred H------HhcCCCCcEEeccCCCCCCHHHHHHHH--hcCccCceecccccCCCChHHHHHhhCCCCCCEEecCCCc----
Q 007252 418 I------ASNCLRIQGLDLYKCSGIGDDGLAALS--NGCKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLT---- 485 (611)
Q Consensus 418 l------~~~~~~L~~L~l~~~~~~~~~~~~~~~--~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~c~---- 485 (611)
+ ..++++|+.|++++| .++. +.... ..+++|+.|+|+++ .++.. ...+..+++|+.|+++++.
T Consensus 717 ~~~~~~~l~nl~~L~~L~Ls~N-~L~~--lp~~l~~~~l~~L~~L~Ls~N-~L~~l-p~~l~~L~~L~~L~Ls~N~~ls~ 791 (876)
T 4ecn_A 717 LKPKDGNYKNTYLLTTIDLRFN-KLTS--LSDDFRATTLPYLSNMDVSYN-CFSSF-PTQPLNSSQLKAFGIRHQRDAEG 791 (876)
T ss_dssp SSCTTSCCTTGGGCCEEECCSS-CCCC--CCGGGSTTTCTTCCEEECCSS-CCSSC-CCGGGGCTTCCEEECCCCBCTTC
T ss_pred hccccccccccCCccEEECCCC-CCcc--chHHhhhccCCCcCEEEeCCC-CCCcc-chhhhcCCCCCEEECCCCCCccc
Confidence 1 012348899999886 5542 22222 26789999999884 56552 3346688999999997632
Q ss_pred -cccHHHHHHHHhcCCccCEeeccccCCCCHHHHHHHHhhCCCCCEEEeccCCCChhH
Q 007252 486 -KITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQNLRQINLSYCALSDMA 542 (611)
Q Consensus 486 -~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~ 542 (611)
.+... +......+++|+.|++++| .++..+.. ..++|+.|++++|++....
T Consensus 792 N~l~~~-ip~~l~~L~~L~~L~Ls~N-~L~~Ip~~----l~~~L~~LdLs~N~l~~i~ 843 (876)
T 4ecn_A 792 NRILRQ-WPTGITTCPSLIQLQIGSN-DIRKVDEK----LTPQLYILDIADNPNISID 843 (876)
T ss_dssp CBCCCC-CCTTGGGCSSCCEEECCSS-CCCBCCSC----CCSSSCEEECCSCTTCEEE
T ss_pred cccccc-ChHHHhcCCCCCEEECCCC-CCCccCHh----hcCCCCEEECCCCCCCccC
Confidence 22211 1112346899999999999 66432211 2378999999999976544
No 33
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.85 E-value=1.2e-19 Score=176.03 Aligned_cols=243 Identities=17% Similarity=0.227 Sum_probs=118.5
Q ss_pred HHHHhhcCCCccEEEccCcccChHHHHHHHHhCCCCcEEeeccCCCCCC---CCCCCCCcEEecCCCccCChhHHHHHHh
Q 007252 293 LLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTN---TDSCRGLVCLKIESCNMITEKGLYQLGS 369 (611)
Q Consensus 293 ~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 369 (611)
+.........++.++++++.+.+..+..+. .++++.|++.++..... ...+++|++|++++|. +.+..+.....
T Consensus 39 W~~~~~~~~~~~~l~l~~~~~~~~~~~~~~--~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~~~~ 115 (336)
T 2ast_B 39 WYRLASDESLWQTLDLTGKNLHPDVTGRLL--SQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSV-IEVSTLHGILS 115 (336)
T ss_dssp HHHHHTCSTTSSEEECTTCBCCHHHHHHHH--HTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCE-ECHHHHHHHHT
T ss_pred HHHHhcCchhheeeccccccCCHHHHHhhh--hccceEEEcCCccccccchhhccCCCCCEEEccCCC-cCHHHHHHHHh
Confidence 333333333577888887777755444331 26778887776531111 3445666666666654 44444555555
Q ss_pred ccCCCcEEecCCCCCCChhhhhhhccCCCceEEEecCCCCCChHhHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhcCc
Q 007252 370 FCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCK 449 (611)
Q Consensus 370 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 449 (611)
.+++|++|++++ +.+++.....+..+++|++|++++|..+++.++..+...+++|++|++++|..+++.++......++
T Consensus 116 ~~~~L~~L~L~~-~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~ 194 (336)
T 2ast_B 116 QCSKLQNLSLEG-LRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVS 194 (336)
T ss_dssp TBCCCSEEECTT-CBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSC
T ss_pred hCCCCCEEeCcC-cccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcc
Confidence 666666666666 3455554555555555555555555445544444444445555555555554455444444444445
Q ss_pred -cCceecccccC-CCChHHHH-HhhCCCCCCEEecCCCccccHHHHHHHHhcCCccCEeeccccCCCCHHHHHHHHhhCC
Q 007252 450 -KLKKLNLSYCV-NVTDRGME-HIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQ 526 (611)
Q Consensus 450 -~L~~L~l~~c~-~l~~~~~~-~l~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~ 526 (611)
+|++|++++|. .+++..+. .+..+++|++|++++|..+++..+..+ ..+++|+.|++++|..+.+.++..+.. ++
T Consensus 195 ~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~l~~-~~ 272 (336)
T 2ast_B 195 ETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF-FQLNYLQHLSLSRCYDIIPETLLELGE-IP 272 (336)
T ss_dssp TTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGG-GGCTTCCEEECTTCTTCCGGGGGGGGG-CT
T ss_pred cCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHH-hCCCCCCEeeCCCCCCCCHHHHHHHhc-CC
Confidence 55555555543 34333222 223344444444444433333332222 224444444444443333333222221 34
Q ss_pred CCCEEEeccCCCChhH
Q 007252 527 NLRQINLSYCALSDMA 542 (611)
Q Consensus 527 ~L~~L~l~~~~l~~~~ 542 (611)
+|++|++++| +++.+
T Consensus 273 ~L~~L~l~~~-i~~~~ 287 (336)
T 2ast_B 273 TLKTLQVFGI-VPDGT 287 (336)
T ss_dssp TCCEEECTTS-SCTTC
T ss_pred CCCEEeccCc-cCHHH
Confidence 4444444444 44333
No 34
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.84 E-value=2.1e-22 Score=209.60 Aligned_cols=415 Identities=15% Similarity=0.093 Sum_probs=224.3
Q ss_pred CCCcEEeccCCCCCChhhHHHHhhhhhhhhccCCceEEeccccCCChHHHHHHHHhCCCccEEeccCCCCCChhhhHHhh
Q 007252 65 PYIKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREAAALS 144 (611)
Q Consensus 65 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~ 144 (611)
++++.|+++++.- ...... .....++|++|+++++ .+.......+ ..+++|++|+++++. +...+..
T Consensus 52 ~~L~~L~Ls~N~i-~~~~~~------~~~~l~~L~~L~Ls~N-~l~~~~~~~~-~~l~~L~~L~Ls~N~-l~~lp~~--- 118 (562)
T 3a79_B 52 PRTKALSLSQNSI-SELRMP------DISFLSELRVLRLSHN-RIRSLDFHVF-LFNQDLEYLDVSHNR-LQNISCC--- 118 (562)
T ss_dssp TTCCEEECCSSCC-CCCCGG------GTTTCTTCCEEECCSC-CCCEECTTTT-TTCTTCCEEECTTSC-CCEECSC---
T ss_pred CCcCEEECCCCCc-cccChh------hhccCCCccEEECCCC-CCCcCCHHHh-CCCCCCCEEECCCCc-CCccCcc---
Confidence 7899999998642 222111 1245689999999998 4443322223 378999999999764 4433322
Q ss_pred cCCCCcEEeccCCCCCChHHHHHHHhcCCccceeecccccccChHHHHHHHHcCCcC--cEEeccCccc--ChHHHHHhh
Q 007252 145 FASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDL--KSLDVSYLKL--TNDSFCSIA 220 (611)
Q Consensus 145 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L--~~L~l~~~~~--~~~~~~~l~ 220 (611)
.+++|++|+++++ .++..........+++|++|+++++ .+....+ ..+++| +.|+++++.+ .......+.
T Consensus 119 ~l~~L~~L~Ls~N-~l~~l~~p~~~~~l~~L~~L~L~~n-~l~~~~~----~~l~~L~L~~L~L~~n~l~~~~~~~~~l~ 192 (562)
T 3a79_B 119 PMASLRHLDLSFN-DFDVLPVCKEFGNLTKLTFLGLSAA-KFRQLDL----LPVAHLHLSCILLDLVSYHIKGGETESLQ 192 (562)
T ss_dssp CCTTCSEEECCSS-CCSBCCCCGGGGGCTTCCEEEEECS-BCCTTTT----GGGTTSCEEEEEEEESSCCCCSSSCCEEE
T ss_pred ccccCCEEECCCC-CccccCchHhhcccCcccEEecCCC-ccccCch----hhhhhceeeEEEeecccccccccCccccc
Confidence 6899999999995 4544222122334899999999997 5554332 344566 9999999866 332222222
Q ss_pred h--------------------------cCCCcEEEecCCCCCC----hhHHHHHHhcCCCccEEEeccccccChHHHHHH
Q 007252 221 T--------------------------LAKLESLVMVGCPCVD----DTGLRFLESGCPLLKTIFVSRCKFVSSTGLISV 270 (611)
Q Consensus 221 ~--------------------------~~~L~~L~l~~~~~~~----~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~ 270 (611)
. +++|+.+++.++. .. ...+..+. ..+.|+.+++..+. +....+..+
T Consensus 193 ~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~l~~~~~~l~-~l~~L~~L~L~~~~-l~~~~~~~~ 269 (562)
T 3a79_B 193 IPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLND-ENCQRLMTFLSELT-RGPTLLNVTLQHIE-TTWKCSVKL 269 (562)
T ss_dssp ECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCS-TTHHHHHHHHHHHH-SCSSCEEEEEEEEE-ECHHHHHHH
T ss_pred ccCcceEEEEecCccchhhhhhhcccccceEEEecccccc-cccchHHHHHHHHh-ccCcceEEEecCCc-CcHHHHHHH
Confidence 2 3344455554421 00 01112222 24555555554432 222211111
Q ss_pred Hh--cCCCCceeccCCCCCccchhHHHHh-----hcCCCccEEEccCccc--ChHHHHHHHHhCCCCcEEeeccCCCCCC
Q 007252 271 IR--GHSGLLQLDAGHCFSELSTTLLHHM-----RDLKNLEAITMDGARI--SDSCFQTISFNCKSLVEIGLSKCLGVTN 341 (611)
Q Consensus 271 ~~--~~~~L~~L~l~~~~~~~~~~~~~~l-----~~~~~L~~L~l~~~~~--~~~~l~~~~~~~~~L~~L~l~~~~~~~~ 341 (611)
.. ..++|++|+++++.. .......+ ..++.|+.+++..+.+ ....+..+. ..++|++|+++++..
T Consensus 270 ~~~~~~~~L~~L~l~~n~l--~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~-~~~~L~~L~l~~n~~--- 343 (562)
T 3a79_B 270 FQFFWPRPVEYLNIYNLTI--TERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVF-AEMNIKMLSISDTPF--- 343 (562)
T ss_dssp HHHHTTSSEEEEEEEEEEE--CSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHH-HTCCCSEEEEESSCC---
T ss_pred HHhhhcccccEEEEeccEe--eccccchhhhcccccchheehhhcccceeecChhhhhhhh-ccCcceEEEccCCCc---
Confidence 11 123555555554421 11111111 1222222222222211 112222222 224455555554421
Q ss_pred CCCCCCCcEEecCCCccCChhHHHHHHhccCCCcEEecCCCCCCChhhhhhhccCCCceEEEecCCCCCChH-hHHHHHh
Q 007252 342 TDSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDK-GLFYIAS 420 (611)
Q Consensus 342 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~l~~ 420 (611)
. ... +...+++|++|++++ +.+++.....+..+++|+.|+++++ .++.. .......
T Consensus 344 -----------------~-~~~---~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~ 400 (562)
T 3a79_B 344 -----------------I-HMV---CPPSPSSFTFLNFTQ-NVFTDSVFQGCSTLKRLQTLILQRN-GLKNFFKVALMTK 400 (562)
T ss_dssp -----------------C-CCC---CCSSCCCCCEEECCS-SCCCTTTTTTCCSCSSCCEEECCSS-CCCBTTHHHHTTT
T ss_pred -----------------c-ccc---CccCCCCceEEECCC-CccccchhhhhcccCCCCEEECCCC-CcCCcccchhhhc
Confidence 1 110 002456777777777 5666655566677788888888876 55542 1222233
Q ss_pred cCCCCcEEeccCCCCCCHHHHHHHHhcCccCceecccccCCCChHHHHHhhCCCCCCEEecCCCccccHHHHHHHHhcCC
Q 007252 421 NCLRIQGLDLYKCSGIGDDGLAALSNGCKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCK 500 (611)
Q Consensus 421 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~ 500 (611)
.+++|++|+++++ .++..........+++|++|+++++ .++......+. ++|+.|+++++ .++. +..-...++
T Consensus 401 ~l~~L~~L~l~~N-~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~--~~L~~L~L~~N-~l~~--ip~~~~~l~ 473 (562)
T 3a79_B 401 NMSSLETLDVSLN-SLNSHAYDRTCAWAESILVLNLSSN-MLTGSVFRCLP--PKVKVLDLHNN-RIMS--IPKDVTHLQ 473 (562)
T ss_dssp TCTTCCEEECTTS-CCBSCCSSCCCCCCTTCCEEECCSS-CCCGGGGSSCC--TTCSEEECCSS-CCCC--CCTTTTSSC
T ss_pred CCCCCCEEECCCC-cCCCccChhhhcCcccCCEEECCCC-CCCcchhhhhc--CcCCEEECCCC-cCcc--cChhhcCCC
Confidence 6788888888876 3332111112234678888888884 56543332221 68888888884 5652 111122678
Q ss_pred ccCEeeccccCCCCHHHHHHHHhhCCCCCEEEeccCCCC
Q 007252 501 RLADLDLKHCAKIDDSGFWALAYYSQNLRQINLSYCALS 539 (611)
Q Consensus 501 ~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~~~l~ 539 (611)
+|+.|++++| .++..... ....+++|+.|++++|++.
T Consensus 474 ~L~~L~L~~N-~l~~l~~~-~~~~l~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 474 ALQELNVASN-QLKSVPDG-VFDRLTSLQYIWLHDNPWD 510 (562)
T ss_dssp CCSEEECCSS-CCCCCCTT-STTTCTTCCCEECCSCCBC
T ss_pred CCCEEECCCC-CCCCCCHH-HHhcCCCCCEEEecCCCcC
Confidence 8999999998 66643222 2344688999999999865
No 35
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.84 E-value=7.1e-23 Score=215.28 Aligned_cols=347 Identities=11% Similarity=0.049 Sum_probs=179.8
Q ss_pred cCCcCcEEeccCcccChHHHHHhhhcCCCcEEEecCCCCCCh-hHHHHHHh-----cCCCccEEEeccccccChHHHHH-
Q 007252 197 KCLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDD-TGLRFLES-----GCPLLKTIFVSRCKFVSSTGLIS- 269 (611)
Q Consensus 197 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~l~~-----~~~~L~~L~l~~~~~~~~~~l~~- 269 (611)
.+++|++|++++|.+....+..+.++++|++|+++++..++. ..+..+.. .+++|++|+++++... .++.
T Consensus 247 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~---~ip~~ 323 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK---TFPVE 323 (636)
T ss_dssp GCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS---SCCCH
T ss_pred ccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC---ccCch
Confidence 455566666665544443344455556666666665432443 22222322 1255666666554322 2222
Q ss_pred -HHhcCCCCceeccCCCCCccchhHHHHhhcCCCccEEEccCcccChHHHHHHHHhCCC-CcEEeeccCCCC--CC-CCC
Q 007252 270 -VIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKS-LVEIGLSKCLGV--TN-TDS 344 (611)
Q Consensus 270 -~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~-L~~L~l~~~~~~--~~-~~~ 344 (611)
.+..+++|+.|+++++.. ..... .+..+++|+.|+++++.+.. +......+++ |++|+++++... .. +..
T Consensus 324 ~~l~~l~~L~~L~L~~N~l--~g~ip-~~~~l~~L~~L~L~~N~l~~--lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~ 398 (636)
T 4eco_A 324 TSLQKMKKLGMLECLYNQL--EGKLP-AFGSEIKLASLNLAYNQITE--IPANFCGFTEQVENLSFAHNKLKYIPNIFDA 398 (636)
T ss_dssp HHHTTCTTCCEEECCSCCC--EEECC-CCEEEEEESEEECCSSEEEE--CCTTSEEECTTCCEEECCSSCCSSCCSCCCT
T ss_pred hhhccCCCCCEEeCcCCcC--ccchh-hhCCCCCCCEEECCCCcccc--ccHhhhhhcccCcEEEccCCcCcccchhhhh
Confidence 344556666666655532 21112 45555566666666665441 1111223455 666666655321 11 222
Q ss_pred --CCCCcEEecCCCccCChhHHHHHH------hccCCCcEEecCCCCCCChhhhhhhccCCCceEEEecCCCCCChHhHH
Q 007252 345 --CRGLVCLKIESCNMITEKGLYQLG------SFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLF 416 (611)
Q Consensus 345 --~~~L~~L~l~~~~~~~~~~~~~~~------~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 416 (611)
+++|+.|+++++. +.......+. -.+++|++|++++ +.++......+..+++|+.|+++++ .++.....
T Consensus 399 ~~l~~L~~L~Ls~N~-l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~-N~l~~lp~~~~~~l~~L~~L~Ls~N-~l~~i~~~ 475 (636)
T 4eco_A 399 KSVSVMSAIDFSYNE-IGSVDGKNFDPLDPTPFKGINVSSINLSN-NQISKFPKELFSTGSPLSSINLMGN-MLTEIPKN 475 (636)
T ss_dssp TCSSCEEEEECCSSC-TTTTTTCSSCTTCSSCCCCCCEEEEECCS-SCCCSCCTHHHHTTCCCSEEECCSS-CCSBCCSS
T ss_pred cccCccCEEECcCCc-CCCcchhhhcccccccccCCCCCEEECcC-CccCcCCHHHHccCCCCCEEECCCC-CCCCcCHH
Confidence 3367777776644 2211100000 0234777777777 5665433344445777777777776 44321111
Q ss_pred HHH------hcCCCCcEEeccCCCCCCHHHHHHHH--hcCccCceecccccCCCChHHHHHhhCCCCCCEEecCCCc---
Q 007252 417 YIA------SNCLRIQGLDLYKCSGIGDDGLAALS--NGCKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLT--- 485 (611)
Q Consensus 417 ~l~------~~~~~L~~L~l~~~~~~~~~~~~~~~--~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~c~--- 485 (611)
.+. ..+++|++|+++++ .++. +.... ..+++|++|+++++ .++. ....+..+++|+.|+++++.
T Consensus 476 ~~~~~~~~~~~l~~L~~L~Ls~N-~l~~--lp~~~~~~~l~~L~~L~Ls~N-~l~~-ip~~~~~l~~L~~L~Ls~N~~ls 550 (636)
T 4eco_A 476 SLKDENENFKNTYLLTSIDLRFN-KLTK--LSDDFRATTLPYLVGIDLSYN-SFSK-FPTQPLNSSTLKGFGIRNQRDAQ 550 (636)
T ss_dssp SSEETTEECTTGGGCCEEECCSS-CCCB--CCGGGSTTTCTTCCEEECCSS-CCSS-CCCGGGGCSSCCEEECCSCBCTT
T ss_pred HhccccccccccCCccEEECcCC-cCCc--cChhhhhccCCCcCEEECCCC-CCCC-cChhhhcCCCCCEEECCCCcccc
Confidence 110 01227888888876 4542 22222 25788888888884 5654 23456678889999886532
Q ss_pred --cccHHHHHHHHhcCCccCEeeccccCCCCHHHHHHHHhhCCCCCEEEeccCCCChhHHH----HHhcc---ccccccc
Q 007252 486 --KITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQNLRQINLSYCALSDMALC----MVMGN---MTRLQDA 556 (611)
Q Consensus 486 --~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~----~~l~~---~~~L~~l 556 (611)
.+.... ......+++|+.|++++| .++..... ..++|+.|++++|++...... ..... +...+..
T Consensus 551 ~N~l~~~~-p~~l~~l~~L~~L~Ls~N-~l~~ip~~----~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~~~~~ 624 (636)
T 4eco_A 551 GNRTLREW-PEGITLCPSLTQLQIGSN-DIRKVNEK----ITPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ 624 (636)
T ss_dssp CCBCCCCC-CTTGGGCSSCCEEECCSS-CCCBCCSC----CCTTCCEEECCSCTTCEEECTTTHHHHHTTCCEEECCTTS
T ss_pred cCcccccC-hHHHhcCCCCCEEECCCC-cCCccCHh----HhCcCCEEECcCCCCccccHHhcchhhhcccceeecCCcc
Confidence 222111 112245889999999999 66543211 237899999999986543310 11222 2233556
Q ss_pred eeecccCCC
Q 007252 557 KLVHLTNCT 565 (611)
Q Consensus 557 ~l~~~~~~~ 565 (611)
++.+|+.+.
T Consensus 625 ~i~~C~~L~ 633 (636)
T 4eco_A 625 DIRGCDALD 633 (636)
T ss_dssp EEESCGGGC
T ss_pred ccCCCcccc
Confidence 777887653
No 36
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.83 E-value=2.3e-22 Score=204.06 Aligned_cols=359 Identities=13% Similarity=0.069 Sum_probs=168.8
Q ss_pred CccceeecccccccChHHHHHHHHcCCcCcEEeccCcccC-hHHHHHhhhcCCCcEEEecCCCCCChhHHHHHHhcCCCc
Q 007252 173 VNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLT-NDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLL 251 (611)
Q Consensus 173 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 251 (611)
++|++|+++++ .+..... .....+++|++|+++++.+. ......+..+++|++|+++++. +.......+.. +++|
T Consensus 30 ~~l~~L~Ls~n-~i~~~~~-~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~-l~~L 105 (455)
T 3v47_A 30 AHVNYVDLSLN-SIAELNE-TSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ-FLQLETGAFNG-LANL 105 (455)
T ss_dssp TTCCEEECCSS-CCCEECT-TTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT-TCEECTTTTTT-CTTC
T ss_pred CccCEEEecCC-ccCcCCh-hHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCc-cCccChhhccC-cccC
Confidence 56788888776 4433211 11245677888888777554 2223446667777777777754 43332333333 6777
Q ss_pred cEEEeccccccChHHHHHHHhcCCCCceeccCCCCCccchh-HHHHhhcCCCccEEEccCcccChHHHHHHHH-hCCCCc
Q 007252 252 KTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTT-LLHHMRDLKNLEAITMDGARISDSCFQTISF-NCKSLV 329 (611)
Q Consensus 252 ~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~-~~~~L~ 329 (611)
++|+++++...........+..+++|++|+++++.. ... ....+..+++|++|+++++.+.......+.. ..++++
T Consensus 106 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l--~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~ 183 (455)
T 3v47_A 106 EVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNI--KKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFT 183 (455)
T ss_dssp CEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBC--CSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEE
T ss_pred CEEeCCCCCCCccccCcccccCcccCCEEECCCCcc--CccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccc
Confidence 777777754322111112245567777777776643 222 1222566677777777766554322111110 124556
Q ss_pred EEeeccCCCCCC------------CCCCCCCcEEecCCCccCChhHHHHHHh--ccCCCcEEecCCCCCCChhhhhhhcc
Q 007252 330 EIGLSKCLGVTN------------TDSCRGLVCLKIESCNMITEKGLYQLGS--FCLRLEEIDLTDCNGVNDKGLEYLSR 395 (611)
Q Consensus 330 ~L~l~~~~~~~~------------~~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~l~~ 395 (611)
.|+++++..... ...+++|+.|+++++. +.......+.. ..++|+.|+++++. ........ ..
T Consensus 184 ~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~-~~ 260 (455)
T 3v47_A 184 LLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNG-FKESMAKRFFDAIAGTKIQSLILSNSY-NMGSSFGH-TN 260 (455)
T ss_dssp EEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSC-CCHHHHHHHHHHTTTCCEEEEECTTCT-TTSCCTTC-CS
T ss_pred ccccccCcccccchhhccccccccccccceeeeEecCCCc-ccccchhhhhccccccceeeEeecccc-ccccccch-hh
Confidence 666655532111 1123445555555432 32222222221 12455555555421 11100000 00
Q ss_pred CCCceEEEecCCCCCChHhHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhcCccCceecccccCCCChHHHHHhhCCCC
Q 007252 396 CSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKKLKKLNLSYCVNVTDRGMEHIRFIED 475 (611)
Q Consensus 396 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~ 475 (611)
++ ......+. ....++|++|+++++ .++... ......+++|++|+++++ .++......+..+++
T Consensus 261 ~~-----------~~~~~~~~--~~~~~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~ 324 (455)
T 3v47_A 261 FK-----------DPDNFTFK--GLEASGVKTCDLSKS-KIFALL-KSVFSHFTDLEQLTLAQN-EINKIDDNAFWGLTH 324 (455)
T ss_dssp SC-----------CCCTTTTG--GGTTSCCCEEECCSS-CCCEEC-TTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTT
T ss_pred hc-----------cCcccccc--cccccCceEEEecCc-cccccc-hhhcccCCCCCEEECCCC-cccccChhHhcCccc
Confidence 00 00000000 002345666666654 232111 111233566666666663 454444444555666
Q ss_pred CCEEecCCCccccHHHHHHHHhcCCccCEeeccccCCCCHHHHHHHHhhCCCCCEEEeccCCCChhHHHHHhcccccccc
Q 007252 476 LSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQNLRQINLSYCALSDMALCMVMGNMTRLQD 555 (611)
Q Consensus 476 L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~l~~~~~L~~ 555 (611)
|+.|++++| .++.... .....+++|++|++++| .++......+ ..+++|++|++++|.++.... ..+..+++|+.
T Consensus 325 L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~Ls~N-~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~ 399 (455)
T 3v47_A 325 LLKLNLSQN-FLGSIDS-RMFENLDKLEVLDLSYN-HIRALGDQSF-LGLPNLKELALDTNQLKSVPD-GIFDRLTSLQK 399 (455)
T ss_dssp CCEEECCSS-CCCEECG-GGGTTCTTCCEEECCSS-CCCEECTTTT-TTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCE
T ss_pred CCEEECCCC-ccCCcCh-hHhcCcccCCEEECCCC-cccccChhhc-cccccccEEECCCCccccCCH-hHhccCCcccE
Confidence 666666663 3332211 11234566666666666 5443322222 224666666666666655444 44556666666
Q ss_pred ceeecc
Q 007252 556 AKLVHL 561 (611)
Q Consensus 556 l~l~~~ 561 (611)
|++.++
T Consensus 400 L~l~~N 405 (455)
T 3v47_A 400 IWLHTN 405 (455)
T ss_dssp EECCSS
T ss_pred EEccCC
Confidence 666554
No 37
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.81 E-value=7.8e-22 Score=209.66 Aligned_cols=228 Identities=14% Similarity=0.065 Sum_probs=132.7
Q ss_pred CCCCcEEeeccCCCCCC--CCCCCCCcEEecCCCccCChhHHHHHHhccCCCcEEecCCCCCCChhhhhhhccCCCceEE
Q 007252 325 CKSLVEIGLSKCLGVTN--TDSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFL 402 (611)
Q Consensus 325 ~~~L~~L~l~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L 402 (611)
++.++.+.+..+..... ...+++|+.++++++................+|+.+++.. ...... ...+..+++|+.+
T Consensus 348 l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~-~~~~~~-~~~~~~l~~L~~l 425 (635)
T 4g8a_A 348 LKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSF-NGVITM-SSNFLGLEQLEHL 425 (635)
T ss_dssp CTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCS-CSEEEE-CSCCTTCTTCCEE
T ss_pred chhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccc-cccccc-cccccccccccch
Confidence 34455555544322111 4456777888777644211111111122566788887776 232221 2334567788888
Q ss_pred EecCCCCCChHhHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhcCccCceecccccCCCChHHHHHhhCCCCCCEEecC
Q 007252 403 KLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELR 482 (611)
Q Consensus 403 ~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~ 482 (611)
.+..+......... ....+++++.++++.+. +... .......+++|+.|+++++..........+..+++|+.|+++
T Consensus 426 ~l~~~~~~~~~~~~-~~~~l~~l~~l~ls~n~-l~~~-~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls 502 (635)
T 4g8a_A 426 DFQHSNLKQMSEFS-VFLSLRNLIYLDISHTH-TRVA-FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 502 (635)
T ss_dssp ECTTSEEESTTSSC-TTTTCTTCCEEECTTSC-CEEC-CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECT
T ss_pred hhhhcccccccccc-ccccccccccccccccc-cccc-cccccccchhhhhhhhhhcccccccCchhhhhccccCEEECC
Confidence 88765322211111 12256788888888752 2211 112234568899999988643433333456678899999999
Q ss_pred CCccccHHHHHHHHhcCCccCEeeccccCCCCHHHHHHHHhhCCCCCEEEeccCCCChhHHHHHhccc-cccccceeecc
Q 007252 483 GLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQNLRQINLSYCALSDMALCMVMGNM-TRLQDAKLVHL 561 (611)
Q Consensus 483 ~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~l~~~-~~L~~l~l~~~ 561 (611)
+| .++.... ....++++|++|++++| +++...... ...+++|+.|++++|.++.... ..+..+ ++|+.|++.+.
T Consensus 503 ~N-~L~~l~~-~~f~~l~~L~~L~Ls~N-~l~~l~~~~-~~~l~~L~~L~Ls~N~l~~~~~-~~l~~l~~~L~~L~L~~N 577 (635)
T 4g8a_A 503 QC-QLEQLSP-TAFNSLSSLQVLNMSHN-NFFSLDTFP-YKCLNSLQVLDYSLNHIMTSKK-QELQHFPSSLAFLNLTQN 577 (635)
T ss_dssp TS-CCCEECT-TTTTTCTTCCEEECTTS-CCCBCCCGG-GTTCTTCCEEECTTSCCCBCCS-SCTTCCCTTCCEEECTTC
T ss_pred CC-ccCCcCh-HHHcCCCCCCEEECCCC-cCCCCChhH-HhCCCCCCEEECCCCcCCCCCH-HHHHhhhCcCCEEEeeCC
Confidence 85 5543221 12346889999999998 665432222 2345889999999999877665 566666 57888888664
Q ss_pred c
Q 007252 562 T 562 (611)
Q Consensus 562 ~ 562 (611)
+
T Consensus 578 p 578 (635)
T 4g8a_A 578 D 578 (635)
T ss_dssp C
T ss_pred C
Confidence 3
No 38
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.80 E-value=8.2e-20 Score=183.42 Aligned_cols=347 Identities=15% Similarity=0.073 Sum_probs=187.1
Q ss_pred hccCCceEEeccccCCChHHHHHHHHhCCCccEEeccCCCCCChhhhHHhhcCCCCcEEeccCCCCCChHHHHHHHhcCC
Q 007252 94 WTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCV 173 (611)
Q Consensus 94 ~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 173 (611)
..+++++|+++++ .+... .. ...+++|++|+++++. +... .+..+++|++|+++++ .++... ...++
T Consensus 40 ~l~~L~~L~Ls~n-~l~~~--~~-l~~l~~L~~L~Ls~n~-l~~~---~~~~l~~L~~L~Ls~N-~l~~~~----~~~l~ 106 (457)
T 3bz5_A 40 QLATLTSLDCHNS-SITDM--TG-IEKLTGLTKLICTSNN-ITTL---DLSQNTNLTYLACDSN-KLTNLD----VTPLT 106 (457)
T ss_dssp HHTTCCEEECCSS-CCCCC--TT-GGGCTTCSEEECCSSC-CSCC---CCTTCTTCSEEECCSS-CCSCCC----CTTCT
T ss_pred HcCCCCEEEccCC-CcccC--hh-hcccCCCCEEEccCCc-CCeE---ccccCCCCCEEECcCC-CCceee----cCCCC
Confidence 3456667776666 23222 12 2356777777777553 3332 1556677777777764 343321 22366
Q ss_pred ccceeecccccccChHHHHHHHHcCCcCcEEeccCcccChHHHHHhhhcCCCcEEEecCCCCCChhHHHHHHhcCCCccE
Q 007252 174 NLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKT 253 (611)
Q Consensus 174 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~ 253 (611)
+|++|+++++ .++... ...+++|+.|++++|.+... .+..+++|++|+++++..+.... + ..+++|+.
T Consensus 107 ~L~~L~L~~N-~l~~l~----~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~~---~-~~l~~L~~ 174 (457)
T 3bz5_A 107 KLTYLNCDTN-KLTKLD----VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKLD---V-TPQTQLTT 174 (457)
T ss_dssp TCCEEECCSS-CCSCCC----CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCCC---C-TTCTTCCE
T ss_pred cCCEEECCCC-cCCeec----CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCcccccc---c-ccCCcCCE
Confidence 7777777766 343321 24567777777777765542 25667777777777664343321 2 22677777
Q ss_pred EEeccccccChHHHHHHHhcCCCCceeccCCCCCccchhHHHHhhcCCCccEEEccCcccChHHHHHHHHhCCCCcEEee
Q 007252 254 IFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGL 333 (611)
Q Consensus 254 L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l 333 (611)
|+++++.... . + +..+++|+.|++.++.. ... .+..+++|+.|+++++.+.... ...+++|+.|++
T Consensus 175 L~ls~n~l~~-l--~--l~~l~~L~~L~l~~N~l--~~~---~l~~l~~L~~L~Ls~N~l~~ip----~~~l~~L~~L~l 240 (457)
T 3bz5_A 175 LDCSFNKITE-L--D--VSQNKLLNRLNCDTNNI--TKL---DLNQNIQLTFLDCSSNKLTEID----VTPLTQLTYFDC 240 (457)
T ss_dssp EECCSSCCCC-C--C--CTTCTTCCEEECCSSCC--SCC---CCTTCTTCSEEECCSSCCSCCC----CTTCTTCSEEEC
T ss_pred EECCCCccce-e--c--cccCCCCCEEECcCCcC--Cee---ccccCCCCCEEECcCCcccccC----ccccCCCCEEEe
Confidence 7776653222 1 1 34556677777666543 111 2555666777777666655421 224556666666
Q ss_pred ccCCCCCC-CCCCCCCcEEecCCCccCChhHHHHHHhccCCCcEEecCCCCCCChhhhhhhccCCCceEEEecCCCCCCh
Q 007252 334 SKCLGVTN-TDSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISD 412 (611)
Q Consensus 334 ~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 412 (611)
+++..... ...+++|+.|++++ .+|+.|+++++...... ....+++|+.|++++|.....
T Consensus 241 ~~N~l~~~~~~~l~~L~~L~l~~----------------n~L~~L~l~~n~~~~~~---~~~~l~~L~~L~Ls~n~~l~~ 301 (457)
T 3bz5_A 241 SVNPLTELDVSTLSKLTTLHCIQ----------------TDLLEIDLTHNTQLIYF---QAEGCRKIKELDVTHNTQLYL 301 (457)
T ss_dssp CSSCCSCCCCTTCTTCCEEECTT----------------CCCSCCCCTTCTTCCEE---ECTTCTTCCCCCCTTCTTCCE
T ss_pred eCCcCCCcCHHHCCCCCEEeccC----------------CCCCEEECCCCccCCcc---cccccccCCEEECCCCcccce
Confidence 65531111 34445555554432 24455555553222211 123456666666666643322
Q ss_pred HhHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhcCccCceecccccCCCChHHHHHhhCCCCCCEEecCCCccccHHHH
Q 007252 413 KGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGL 492 (611)
Q Consensus 413 ~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~c~~l~~~~~ 492 (611)
.. ...++|+.|++++| ++|+.|++++ +.++.. .+..+++|+.|++++ +.+++
T Consensus 302 l~-----~~~~~L~~L~l~~~---------------~~L~~L~L~~-N~l~~l---~l~~l~~L~~L~l~~-N~l~~--- 353 (457)
T 3bz5_A 302 LD-----CQAAGITELDLSQN---------------PKLVYLYLNN-TELTEL---DVSHNTKLKSLSCVN-AHIQD--- 353 (457)
T ss_dssp EE-----CTTCCCSCCCCTTC---------------TTCCEEECTT-CCCSCC---CCTTCTTCSEEECCS-SCCCB---
T ss_pred ec-----cCCCcceEechhhc---------------ccCCEEECCC-Cccccc---ccccCCcCcEEECCC-CCCCC---
Confidence 11 12345555555543 5677777776 345543 256677777777777 45542
Q ss_pred HHHHhcCCccCEeeccccCCCCHHHHHHHHhhCCCCCEEEeccCCCC
Q 007252 493 TALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQNLRQINLSYCALS 539 (611)
Q Consensus 493 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~~~l~ 539 (611)
+++|+.|+++++ .+... ..+..|+.+++++|.++
T Consensus 354 ------l~~L~~L~l~~n-~l~g~------~~~~~l~~l~l~~N~l~ 387 (457)
T 3bz5_A 354 ------FSSVGKIPALNN-NFEAE------GQTITMPKETLTNNSLT 387 (457)
T ss_dssp ------CTTGGGSSGGGT-SEEEE------EEEEECCCBCCBTTBEE
T ss_pred ------ccccccccccCC-cEEec------ceeeecCccccccCcEE
Confidence 456666666665 44322 12356777777777754
No 39
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.80 E-value=2.5e-19 Score=179.86 Aligned_cols=313 Identities=17% Similarity=0.146 Sum_probs=163.9
Q ss_pred hCCCccEEeccCCCCCChhhhHHhhcCCCCcEEeccCCCCCChHHHHHHHhcCCccceeecccccccChHHHHHHHHcCC
Q 007252 120 ACPLLESVDLSYCCGFGDREAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCL 199 (611)
Q Consensus 120 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 199 (611)
.+++|++|+++++. +.+. ..+..+++|++|+++++ .++... ...+++|++|+++++ .++... ...++
T Consensus 40 ~l~~L~~L~Ls~n~-l~~~--~~l~~l~~L~~L~Ls~n-~l~~~~----~~~l~~L~~L~Ls~N-~l~~~~----~~~l~ 106 (457)
T 3bz5_A 40 QLATLTSLDCHNSS-ITDM--TGIEKLTGLTKLICTSN-NITTLD----LSQNTNLTYLACDSN-KLTNLD----VTPLT 106 (457)
T ss_dssp HHTTCCEEECCSSC-CCCC--TTGGGCTTCSEEECCSS-CCSCCC----CTTCTTCSEEECCSS-CCSCCC----CTTCT
T ss_pred HcCCCCEEEccCCC-cccC--hhhcccCCCCEEEccCC-cCCeEc----cccCCCCCEEECcCC-CCceee----cCCCC
Confidence 45788888888653 4332 25667788888888774 444321 223667777777765 343322 23566
Q ss_pred cCcEEeccCcccChHHHHHhhhcCCCcEEEecCCCCCChhHHHHHHhcCCCccEEEeccccccChHHHHHHHhcCCCCce
Q 007252 200 DLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQ 279 (611)
Q Consensus 200 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~ 279 (611)
+|++|++++|.+... .+..+++|++|+++++. ++... + ..+++|++|+++++......
T Consensus 107 ~L~~L~L~~N~l~~l---~~~~l~~L~~L~l~~N~-l~~l~---l-~~l~~L~~L~l~~n~~~~~~-------------- 164 (457)
T 3bz5_A 107 KLTYLNCDTNKLTKL---DVSQNPLLTYLNCARNT-LTEID---V-SHNTQLTELDCHLNKKITKL-------------- 164 (457)
T ss_dssp TCCEEECCSSCCSCC---CCTTCTTCCEEECTTSC-CSCCC---C-TTCTTCCEEECTTCSCCCCC--------------
T ss_pred cCCEEECCCCcCCee---cCCCCCcCCEEECCCCc-cceec---c-ccCCcCCEEECCCCCccccc--------------
Confidence 677777776655442 25566666666666543 32211 1 22555555555554322221
Q ss_pred eccCCCCCccchhHHHHhhcCCCccEEEccCcccChHHHHHHHHhCCCCcEEeeccCCCCCC-CCCCCCCcEEecCCCcc
Q 007252 280 LDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTN-TDSCRGLVCLKIESCNM 358 (611)
Q Consensus 280 L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~L~~L~l~~~~~ 358 (611)
.+..+++|+.|+++++.+.... ...+++|++|+++++..... +..+++|+.|+++++.
T Consensus 165 ----------------~~~~l~~L~~L~ls~n~l~~l~----l~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~- 223 (457)
T 3bz5_A 165 ----------------DVTPQTQLTTLDCSFNKITELD----VSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNK- 223 (457)
T ss_dssp ----------------CCTTCTTCCEEECCSSCCCCCC----CTTCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSSC-
T ss_pred ----------------ccccCCcCCEEECCCCccceec----cccCCCCCEEECcCCcCCeeccccCCCCCEEECcCCc-
Confidence 1333444444444444433311 11334444444444321110 3444555555555533
Q ss_pred CChhHHHHHHhccCCCcEEecCCCCCCChhhhhhhccCCCceEEEecCCCCCChHhHHHHHhcCCCCcEEeccCCCCCCH
Q 007252 359 ITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGD 438 (611)
Q Consensus 359 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~ 438 (611)
++... ...+++|+.|++++ +.++... +..+++|+.|.++. .+|+.|++++|.....
T Consensus 224 l~~ip----~~~l~~L~~L~l~~-N~l~~~~---~~~l~~L~~L~l~~----------------n~L~~L~l~~n~~~~~ 279 (457)
T 3bz5_A 224 LTEID----VTPLTQLTYFDCSV-NPLTELD---VSTLSKLTTLHCIQ----------------TDLLEIDLTHNTQLIY 279 (457)
T ss_dssp CSCCC----CTTCTTCSEEECCS-SCCSCCC---CTTCTTCCEEECTT----------------CCCSCCCCTTCTTCCE
T ss_pred ccccC----ccccCCCCEEEeeC-CcCCCcC---HHHCCCCCEEeccC----------------CCCCEEECCCCccCCc
Confidence 22211 22556677777766 4554432 33455666665543 2455666666543332
Q ss_pred HHHHHHHhcCccCceecccccCCCChHHHHHhhCCCCCCEEecCCCccccHHHHHHHHhcCCccCEeeccccCCCCHHHH
Q 007252 439 DGLAALSNGCKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGF 518 (611)
Q Consensus 439 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~ 518 (611)
.. ...|++|+.|++++|..+.... ...++|+.|++++| ++|+.|++++| .++...
T Consensus 280 ~~----~~~l~~L~~L~Ls~n~~l~~l~----~~~~~L~~L~l~~~---------------~~L~~L~L~~N-~l~~l~- 334 (457)
T 3bz5_A 280 FQ----AEGCRKIKELDVTHNTQLYLLD----CQAAGITELDLSQN---------------PKLVYLYLNNT-ELTELD- 334 (457)
T ss_dssp EE----CTTCTTCCCCCCTTCTTCCEEE----CTTCCCSCCCCTTC---------------TTCCEEECTTC-CCSCCC-
T ss_pred cc----ccccccCCEEECCCCcccceec----cCCCcceEechhhc---------------ccCCEEECCCC-cccccc-
Confidence 11 1346777777777765443322 13455555555543 57777777777 665431
Q ss_pred HHHHhhCCCCCEEEeccCCCCh
Q 007252 519 WALAYYSQNLRQINLSYCALSD 540 (611)
Q Consensus 519 ~~~~~~~~~L~~L~l~~~~l~~ 540 (611)
...+++|+.|++++|.+++
T Consensus 335 ---l~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 335 ---VSHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp ---CTTCTTCSEEECCSSCCCB
T ss_pred ---cccCCcCcEEECCCCCCCC
Confidence 3345778888888887764
No 40
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.79 E-value=1.5e-17 Score=164.35 Aligned_cols=192 Identities=19% Similarity=0.222 Sum_probs=111.9
Q ss_pred CCCCCcEEecCCCccCChhH---HHHHHhccCCCcEEecCCCCCCChhhhhhhcc----C---------CCceEEEecCC
Q 007252 344 SCRGLVCLKIESCNMITEKG---LYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSR----C---------SELLFLKLGLC 407 (611)
Q Consensus 344 ~~~~L~~L~l~~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~----~---------~~L~~L~l~~~ 407 (611)
.+++|++|+++++. +...+ +......+++|++|++++ +.+++.+...+.. + ++|++|++++|
T Consensus 92 ~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~-n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n 169 (386)
T 2ca6_A 92 KCPKLHTVRLSDNA-FGPTAQEPLIDFLSKHTPLEHLYLHN-NGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN 169 (386)
T ss_dssp TCTTCCEEECCSCC-CCTTTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred hCCcccEEECCCCc-CCHHHHHHHHHHHHhCCCCCEEECcC-CCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC
Confidence 34555555555533 33322 222334567777777777 4565554443332 2 67777777776
Q ss_pred CCCChHhHHHH---HhcCCCCcEEeccCCCCCCHHHHHHHHh----cCccCceecccccCCCChHHH----HHhhCCCCC
Q 007252 408 ENISDKGLFYI---ASNCLRIQGLDLYKCSGIGDDGLAALSN----GCKKLKKLNLSYCVNVTDRGM----EHIRFIEDL 476 (611)
Q Consensus 408 ~~~~~~~~~~l---~~~~~~L~~L~l~~~~~~~~~~~~~~~~----~~~~L~~L~l~~c~~l~~~~~----~~l~~~~~L 476 (611)
.+++.++..+ ...+++|++|++++| .+++.++..+.. .+++|+.|++++| .+++.+. ..+..+++|
T Consensus 170 -~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n-~l~~~g~~~l~~~l~~~~~L 246 (386)
T 2ca6_A 170 -RLENGSMKEWAKTFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDN-TFTHLGSSALAIALKSWPNL 246 (386)
T ss_dssp -CCTGGGHHHHHHHHHHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSS-CCHHHHHHHHHHHGGGCTTC
T ss_pred -CCCcHHHHHHHHHHHhCCCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCC-CCCcHHHHHHHHHHccCCCc
Confidence 5665555433 225677777777775 666666544433 5677777777774 4654333 234567777
Q ss_pred CEEecCCCccccHHHHHHHHh-----cCCccCEeeccccCCCCHHHHHHHH----hhCCCCCEEEeccCCCChhH
Q 007252 477 SDLELRGLTKITSAGLTALAA-----GCKRLADLDLKHCAKIDDSGFWALA----YYSQNLRQINLSYCALSDMA 542 (611)
Q Consensus 477 ~~L~l~~c~~l~~~~~~~~~~-----~~~~L~~L~l~~c~~l~~~~~~~~~----~~~~~L~~L~l~~~~l~~~~ 542 (611)
++|++++| .+++.+...++. .+++|+.|++++| .+++.++..+. ..+++|++|++++|+++..+
T Consensus 247 ~~L~L~~n-~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 247 RELGLNDC-LLSARGAAAVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp CEEECTTC-CCCHHHHHHHHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred CEEECCCC-CCchhhHHHHHHHHhhccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 77777774 466554443332 1677777777777 66664433332 33577777777777766555
No 41
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.78 E-value=7e-20 Score=181.44 Aligned_cols=131 Identities=21% Similarity=0.143 Sum_probs=69.7
Q ss_pred CCceEEEecCCCCCChHhHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhcCccCceecccccCCCChHHHHHhhCCCCC
Q 007252 397 SELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKKLKKLNLSYCVNVTDRGMEHIRFIEDL 476 (611)
Q Consensus 397 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~L 476 (611)
++|+.|+++++ .+++.. ....+++|++|+++++ .++..... ....+++|++|+++++ .++.... .+..+++|
T Consensus 226 ~~L~~L~l~~n-~l~~~~---~l~~l~~L~~L~Ls~n-~l~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~-~~~~l~~L 297 (390)
T 3o6n_A 226 VELTILKLQHN-NLTDTA---WLLNYPGLVEVDLSYN-ELEKIMYH-PFVKMQRLERLYISNN-RLVALNL-YGQPIPTL 297 (390)
T ss_dssp SSCCEEECCSS-CCCCCG---GGGGCTTCSEEECCSS-CCCEEESG-GGTTCSSCCEEECCSS-CCCEEEC-SSSCCTTC
T ss_pred ccccEEECCCC-CCcccH---HHcCCCCccEEECCCC-cCCCcChh-HccccccCCEEECCCC-cCcccCc-ccCCCCCC
Confidence 44555555554 333221 1124555566665554 33321111 1123566666666663 3443211 12356777
Q ss_pred CEEecCCCccccHHHHHHHHhcCCccCEeeccccCCCCHHHHHHHHhhCCCCCEEEeccCCCChhHH
Q 007252 477 SDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQNLRQINLSYCALSDMAL 543 (611)
Q Consensus 477 ~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~ 543 (611)
+.|++++| .++... .....+++|+.|++++| .++... ...+++|+.|++++|+++....
T Consensus 298 ~~L~L~~n-~l~~~~--~~~~~l~~L~~L~L~~N-~i~~~~----~~~~~~L~~L~l~~N~~~~~~~ 356 (390)
T 3o6n_A 298 KVLDLSHN-HLLHVE--RNQPQFDRLENLYLDHN-SIVTLK----LSTHHTLKNLTLSHNDWDCNSL 356 (390)
T ss_dssp CEEECCSS-CCCCCG--GGHHHHTTCSEEECCSS-CCCCCC----CCTTCCCSEEECCSSCEEHHHH
T ss_pred CEEECCCC-cceecC--ccccccCcCCEEECCCC-ccceeC----chhhccCCEEEcCCCCccchhH
Confidence 77777774 443211 11234678888888888 565442 2345788888888888776665
No 42
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.77 E-value=8.5e-21 Score=201.68 Aligned_cols=205 Identities=21% Similarity=0.143 Sum_probs=117.4
Q ss_pred hhhccCCceEEeccccCCChHHHHHHHHhCCCccEEeccCCCCCChhhhHHhhcCCCCcEEeccCCCCCChHHHHHHHhc
Q 007252 92 LSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREAAALSFASGLKEVKLDKCLNVTDVGLAKIAVR 171 (611)
Q Consensus 92 ~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 171 (611)
.....++++|+++++ .++......+ ..+++|++|+++++ .+......++..+++|++|+++++ .++......+ .+
T Consensus 48 ~~lp~~~~~LdLs~N-~i~~l~~~~f-~~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~f-~~ 122 (635)
T 4g8a_A 48 DNLPFSTKNLDLSFN-PLRHLGSYSF-FSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAF-SG 122 (635)
T ss_dssp SSSCTTCCEEECTTS-CCCEECTTTT-TTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTC-CCCEECGGGG-TT
T ss_pred CCCCcCCCEEEeeCC-CCCCCCHHHH-hCCCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCC-cCCCCCHHHh-cC
Confidence 344568899999887 4443322223 37889999999876 466666667888889999999884 4544222222 34
Q ss_pred CCccceeecccccccChHHHHHHHHcCCcCcEEeccCcccChHH-HHHhhhcCCCcEEEecCCCCCC---hhHHHHHHhc
Q 007252 172 CVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDS-FCSIATLAKLESLVMVGCPCVD---DTGLRFLESG 247 (611)
Q Consensus 172 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~---~~~~~~l~~~ 247 (611)
+++|++|+++++ .++.... .....+++|++|++++|.+.... ...+..+++|++|+++++. +. ...+..+...
T Consensus 123 L~~L~~L~Ls~N-~l~~l~~-~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~l~~L~~l 199 (635)
T 4g8a_A 123 LSSLQKLVAVET-NLASLEN-FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQM 199 (635)
T ss_dssp CTTCCEEECTTS-CCCCSTT-CCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGHHHHTC
T ss_pred CCCCCEEECCCC-cCCCCCh-hhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc-ccccccccccchhhh
Confidence 788888888886 4432211 11245788888888888665432 3446678888888888754 32 2334444432
Q ss_pred CCCccEEEeccccccChHHHHHHHhcCCCCceeccCCCCCccchhHHHHhhcCCCccEEEc
Q 007252 248 CPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITM 308 (611)
Q Consensus 248 ~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l 308 (611)
......++++.... .... ........++.+.+..+.. ........+..++.++...+
T Consensus 200 ~~~~~~~~ls~n~l-~~i~--~~~~~~~~~~~l~l~~n~~-~~~~~~~~~~~l~~l~~~~l 256 (635)
T 4g8a_A 200 PLLNLSLDLSLNPM-NFIQ--PGAFKEIRLHKLTLRNNFD-SLNVMKTCIQGLAGLEVHRL 256 (635)
T ss_dssp TTCCCEEECTTCCC-CEEC--TTTTTTCEEEEEEEESCCS-SHHHHHHHHHTTTTCEEEEE
T ss_pred hhhhhhhhcccCcc-cccC--cccccchhhhhhhhhcccc-cccccchhhcCCcccccccc
Confidence 23344555554221 1100 0011223455566555432 22334455666666665554
No 43
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.77 E-value=7.6e-19 Score=173.99 Aligned_cols=67 Identities=24% Similarity=0.218 Sum_probs=32.7
Q ss_pred CccCceecccccCCCChHHHHHhhCCCCCCEEecCCCccccHHHHHHHHhcCCccCEeeccccCCCCHHHHHHHH
Q 007252 448 CKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALA 522 (611)
Q Consensus 448 ~~~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 522 (611)
+++|++|++++| .++... ..+..+++|+.|+++++ .++... ...+++|+.|++++| .+.......+.
T Consensus 294 l~~L~~L~L~~n-~l~~~~-~~~~~l~~L~~L~L~~N-~i~~~~----~~~~~~L~~L~l~~N-~~~~~~~~~~~ 360 (390)
T 3o6n_A 294 IPTLKVLDLSHN-HLLHVE-RNQPQFDRLENLYLDHN-SIVTLK----LSTHHTLKNLTLSHN-DWDCNSLRALF 360 (390)
T ss_dssp CTTCCEEECCSS-CCCCCG-GGHHHHTTCSEEECCSS-CCCCCC----CCTTCCCSEEECCSS-CEEHHHHHHHT
T ss_pred CCCCCEEECCCC-cceecC-ccccccCcCCEEECCCC-ccceeC----chhhccCCEEEcCCC-CccchhHHHHH
Confidence 455555555553 333221 12334556666666653 333221 234566666666666 55554444443
No 44
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.77 E-value=7.9e-17 Score=159.14 Aligned_cols=160 Identities=18% Similarity=0.165 Sum_probs=96.1
Q ss_pred CCCcEEecCCCCCCChhhhh----hhccCCCceEEEecCCCCCChHhHHHHHh----cCCCCcEEeccCCCCCCHHHHHH
Q 007252 372 LRLEEIDLTDCNGVNDKGLE----YLSRCSELLFLKLGLCENISDKGLFYIAS----NCLRIQGLDLYKCSGIGDDGLAA 443 (611)
Q Consensus 372 ~~L~~L~l~~~~~~~~~~~~----~l~~~~~L~~L~l~~~~~~~~~~~~~l~~----~~~~L~~L~l~~~~~~~~~~~~~ 443 (611)
++|++|++++ +.+++.++. .+..+++|++|++++| .+++.++..+.. .+++|++|++++| .+++.+...
T Consensus 159 ~~L~~L~L~~-n~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n-~l~~~g~~~ 235 (386)
T 2ca6_A 159 PPLRSIICGR-NRLENGSMKEWAKTFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDN-TFTHLGSSA 235 (386)
T ss_dssp CCCCEEECCS-SCCTGGGHHHHHHHHHHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSS-CCHHHHHHH
T ss_pred CCCcEEECCC-CCCCcHHHHHHHHHHHhCCCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCC-CCCcHHHHH
Confidence 5666666665 455443333 3335566666666665 566555444332 5667777777765 465544333
Q ss_pred H---HhcCccCceecccccCCCChHHHHH----hh--CCCCCCEEecCCCccccHHHHHH----HHhcCCccCEeecccc
Q 007252 444 L---SNGCKKLKKLNLSYCVNVTDRGMEH----IR--FIEDLSDLELRGLTKITSAGLTA----LAAGCKRLADLDLKHC 510 (611)
Q Consensus 444 ~---~~~~~~L~~L~l~~c~~l~~~~~~~----l~--~~~~L~~L~l~~c~~l~~~~~~~----~~~~~~~L~~L~l~~c 510 (611)
+ ...+++|++|++++| .+++.+... +. .+++|+.|++++| .++..++.. +..++++|+.|++++|
T Consensus 236 l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~N 313 (386)
T 2ca6_A 236 LAIALKSWPNLRELGLNDC-LLSARGAAAVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGN 313 (386)
T ss_dssp HHHHGGGCTTCCEEECTTC-CCCHHHHHHHHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred HHHHHccCCCcCEEECCCC-CCchhhHHHHHHHHhhccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccCC
Confidence 3 345677777777774 466654433 32 2788888888884 576643332 2245788999999988
Q ss_pred CCCCHHH--HHHHHhhCCCCCEEEeccCC
Q 007252 511 AKIDDSG--FWALAYYSQNLRQINLSYCA 537 (611)
Q Consensus 511 ~~l~~~~--~~~~~~~~~~L~~L~l~~~~ 537 (611)
.++..+ +..+...++.++.+.+....
T Consensus 314 -~l~~~~~~~~~l~~~l~~~~~~~l~~~d 341 (386)
T 2ca6_A 314 -RFSEEDDVVDEIREVFSTRGRGELDELD 341 (386)
T ss_dssp -BSCTTSHHHHHHHHHHHHHTCCEECCCC
T ss_pred -cCCcchhHHHHHHHHhhhcCcchhhhcc
Confidence 666544 46666666776666665544
No 45
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.76 E-value=7.2e-20 Score=186.71 Aligned_cols=301 Identities=17% Similarity=0.136 Sum_probs=171.7
Q ss_pred cCcEEeccCcccChHHHHHhhhcCCCcEEEecCCCCCChhHHHHHHhcCCCccEEEeccccccChHHHHHHHhcCCCCce
Q 007252 200 DLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQ 279 (611)
Q Consensus 200 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~ 279 (611)
+++.|+++++.+.......+..+++|++|+++++. ++......+.. +++|++|+++++..... ....+..+++|++
T Consensus 33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~-l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~ 108 (477)
T 2id5_A 33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENI-VSAVEPGAFNN-LFNLRTLGLRSNRLKLI--PLGVFTGLSNLTK 108 (477)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSC-CCEECTTTTTT-CTTCCEEECCSSCCCSC--CTTSSTTCTTCCE
T ss_pred CCcEEECCCCccceECHhHccCCCCCCEEECCCCc-cCEeChhhhhC-CccCCEEECCCCcCCcc--CcccccCCCCCCE
Confidence 45555555555444333445555666666665532 33222222222 55566666555321110 0111234555666
Q ss_pred eccCCCCCccchhHHHHhhcCCCccEEEccCcccChHHHHHHHHhCCCCcEEeeccCCCCCCCCCCCCCcEEecCCCccC
Q 007252 280 LDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTDSCRGLVCLKIESCNMI 359 (611)
Q Consensus 280 L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~~~ 359 (611)
|+++++.. .......+..+++|++|+++++.+....... +..+++|+.|+++++. +
T Consensus 109 L~Ls~n~i--~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~---------------------~~~l~~L~~L~l~~n~-l 164 (477)
T 2id5_A 109 LDISENKI--VILLDYMFQDLYNLKSLEVGDNDLVYISHRA---------------------FSGLNSLEQLTLEKCN-L 164 (477)
T ss_dssp EECTTSCC--CEECTTTTTTCTTCCEEEECCTTCCEECTTS---------------------STTCTTCCEEEEESCC-C
T ss_pred EECCCCcc--ccCChhHccccccCCEEECCCCccceeChhh---------------------ccCCCCCCEEECCCCc-C
Confidence 66655532 2222334455666666666665443211111 4445566666666543 3
Q ss_pred ChhHHHHHHhccCCCcEEecCCCCCCChhhhhhhccCCCceEEEecCCCCCChHhHHHHHhcCCCCcEEeccCCCCCCHH
Q 007252 360 TEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDD 439 (611)
Q Consensus 360 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~ 439 (611)
+...... ...+++|+.|++++ +.+.......+..+++|+.|+++++..+.......+ ...+|++|++++| .++..
T Consensus 165 ~~~~~~~-l~~l~~L~~L~l~~-n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~n-~l~~~ 239 (477)
T 2id5_A 165 TSIPTEA-LSHLHGLIVLRLRH-LNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL--YGLNLTSLSITHC-NLTAV 239 (477)
T ss_dssp SSCCHHH-HTTCTTCCEEEEES-CCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTT--TTCCCSEEEEESS-CCCSC
T ss_pred cccChhH-hcccCCCcEEeCCC-CcCcEeChhhcccCcccceeeCCCCccccccCcccc--cCccccEEECcCC-ccccc
Confidence 3322222 33678899999988 577666666677888999999988754443221111 2358899999886 45533
Q ss_pred HHHHHHhcCccCceecccccCCCChHHHHHhhCCCCCCEEecCCCccccHHHHHHHHhcCCccCEeeccccCCCCHHHHH
Q 007252 440 GLAALSNGCKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFW 519 (611)
Q Consensus 440 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~ 519 (611)
... ....+++|+.|+++++ .++......+..+++|+.|+++++ .++..... ....+++|+.|++++| .++.....
T Consensus 240 ~~~-~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~L~~N-~l~~~~~~ 314 (477)
T 2id5_A 240 PYL-AVRHLVYLRFLNLSYN-PISTIEGSMLHELLRLQEIQLVGG-QLAVVEPY-AFRGLNYLRVLNVSGN-QLTTLEES 314 (477)
T ss_dssp CHH-HHTTCTTCCEEECCSS-CCCEECTTSCTTCTTCCEEECCSS-CCSEECTT-TBTTCTTCCEEECCSS-CCSCCCGG
T ss_pred CHH-HhcCccccCeeECCCC-cCCccChhhccccccCCEEECCCC-ccceECHH-HhcCcccCCEEECCCC-cCceeCHh
Confidence 222 2356789999999884 576665566778889999999884 45432211 2235788999999988 66543222
Q ss_pred HHHhhCCCCCEEEeccCCCC
Q 007252 520 ALAYYSQNLRQINLSYCALS 539 (611)
Q Consensus 520 ~~~~~~~~L~~L~l~~~~l~ 539 (611)
....+++|+.|++++|++.
T Consensus 315 -~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 315 -VFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp -GBSCGGGCCEEECCSSCEE
T ss_pred -HcCCCcccCEEEccCCCcc
Confidence 2233578899999988854
No 46
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.74 E-value=1.5e-18 Score=181.35 Aligned_cols=317 Identities=17% Similarity=0.090 Sum_probs=188.8
Q ss_pred CCccceeecccccccChHHHHHHHHcCCcCcEEeccCcccChHHHHHhhhcCCCcEEEecCCCCCChhHHHHHHhcCCCc
Q 007252 172 CVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLL 251 (611)
Q Consensus 172 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 251 (611)
+++++.+++.++ .+.... ..+...+++|+.|+++++.+.......+..+++|++|+++++. ++...
T Consensus 50 l~~l~~l~l~~~-~l~~lp-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~----------- 115 (597)
T 3oja_B 50 LNNQKIVTFKNS-TMRKLP-AALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLP----------- 115 (597)
T ss_dssp GCCCSEEEESSC-EESEEC-THHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCC-----------
T ss_pred CCCceEEEeeCC-CCCCcC-HHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCc-CCCCC-----------
Confidence 345555555554 222211 1122345555566555555444333344445555555555432 22111
Q ss_pred cEEEeccccccChHHHHHHHhcCCCCceeccCCCCCccchhHHHHhhcCCCccEEEccCcccChHHHHHHHHhCCCCcEE
Q 007252 252 KTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEI 331 (611)
Q Consensus 252 ~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L 331 (611)
+..+..+++|+.|+++++. +.......+..+++|+.|+++++.+.......+ ..+++|++|
T Consensus 116 ----------------~~~~~~l~~L~~L~L~~n~--l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L 176 (597)
T 3oja_B 116 ----------------PHVFQNVPLLTVLVLERND--LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTF-QATTSLQNL 176 (597)
T ss_dssp ----------------TTTTTTCTTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTT-TTCTTCCEE
T ss_pred ----------------HHHHcCCCCCCEEEeeCCC--CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhh-hcCCcCcEE
Confidence 1122345566666665553 222223345778899999999997764332222 267899999
Q ss_pred eeccCCCCCC-CCCCCCCcEEecCCCccCChhHHHHHHhccCCCcEEecCCCCCCChhhhhhhccCCCceEEEecCCCCC
Q 007252 332 GLSKCLGVTN-TDSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENI 410 (611)
Q Consensus 332 ~l~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 410 (611)
+++++..... ...+++|+.|+++++. +... ...++|+.|++++ +.++..... ..++|+.|+++++ .+
T Consensus 177 ~L~~N~l~~~~~~~l~~L~~L~l~~n~-l~~l------~~~~~L~~L~ls~-n~l~~~~~~---~~~~L~~L~L~~n-~l 244 (597)
T 3oja_B 177 QLSSNRLTHVDLSLIPSLFHANVSYNL-LSTL------AIPIAVEELDASH-NSINVVRGP---VNVELTILKLQHN-NL 244 (597)
T ss_dssp ECTTSCCSBCCGGGCTTCSEEECCSSC-CSEE------ECCTTCSEEECCS-SCCCEEECS---CCSCCCEEECCSS-CC
T ss_pred ECcCCCCCCcChhhhhhhhhhhcccCc-cccc------cCCchhheeeccC-Ccccccccc---cCCCCCEEECCCC-CC
Confidence 9988743222 6678889999988754 3321 1346889999988 555443221 2368999999887 55
Q ss_pred ChHhHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhcCccCceecccccCCCChHHHHHhhCCCCCCEEecCCCccccHH
Q 007252 411 SDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSA 490 (611)
Q Consensus 411 ~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~c~~l~~~ 490 (611)
++. . ....+++|+.|++++| .++...... ...+++|+.|+++++ .++... ..+..+++|+.|++++| .++..
T Consensus 245 ~~~--~-~l~~l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~Ls~N-~l~~l~-~~~~~l~~L~~L~Ls~N-~l~~i 316 (597)
T 3oja_B 245 TDT--A-WLLNYPGLVEVDLSYN-ELEKIMYHP-FVKMQRLERLYISNN-RLVALN-LYGQPIPTLKVLDLSHN-HLLHV 316 (597)
T ss_dssp CCC--G-GGGGCTTCSEEECCSS-CCCEEESGG-GTTCSSCCEEECTTS-CCCEEE-CSSSCCTTCCEEECCSS-CCCCC
T ss_pred CCC--h-hhccCCCCCEEECCCC-ccCCCCHHH-hcCccCCCEEECCCC-CCCCCC-cccccCCCCcEEECCCC-CCCcc
Confidence 543 1 2236889999999986 454322222 245789999999884 565432 12345889999999985 45422
Q ss_pred HHHHHHhcCCccCEeeccccCCCCHHHHHHHHhhCCCCCEEEeccCCCChhHHHHHhc
Q 007252 491 GLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQNLRQINLSYCALSDMALCMVMG 548 (611)
Q Consensus 491 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~l~ 548 (611)
......+++|+.|++++| .++... ...+++|+.|++++|+++.......+.
T Consensus 317 --~~~~~~l~~L~~L~L~~N-~l~~~~----~~~~~~L~~L~l~~N~~~~~~~~~~~~ 367 (597)
T 3oja_B 317 --ERNQPQFDRLENLYLDHN-SIVTLK----LSTHHTLKNLTLSHNDWDCNSLRALFR 367 (597)
T ss_dssp --GGGHHHHTTCSEEECCSS-CCCCCC----CCTTCCCSEEECCSSCEEHHHHHHHTT
T ss_pred --CcccccCCCCCEEECCCC-CCCCcC----hhhcCCCCEEEeeCCCCCChhHHHHHH
Confidence 111235789999999999 665432 334689999999999977665533333
No 47
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.73 E-value=1.2e-18 Score=182.27 Aligned_cols=304 Identities=14% Similarity=0.068 Sum_probs=180.7
Q ss_pred CCCCcEEeccCCCCCChHHHHHHHhcCCccceeecccccccChHHHHHHHHcCCcCcEEeccCcccChHHHHHhhhcCCC
Q 007252 146 ASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATLAKL 225 (611)
Q Consensus 146 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 225 (611)
+++++.+++.++ .++..... +...+++|++|+++++ .+...... ....+++|++|++++|.+.......+..+++|
T Consensus 50 l~~l~~l~l~~~-~l~~lp~~-~~~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 125 (597)
T 3oja_B 50 LNNQKIVTFKNS-TMRKLPAA-LLDSFRQVELLNLNDL-QIEEIDTY-AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 125 (597)
T ss_dssp GCCCSEEEESSC-EESEECTH-HHHHCCCCSEEECTTS-CCCEECTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCceEEEeeCC-CCCCcCHH-HHccCCCCcEEECCCC-CCCCCChH-HhcCCCCCCEEECCCCcCCCCCHHHHcCCCCC
Confidence 589999999984 44433322 3344999999999987 45433221 23468999999999998877666667889999
Q ss_pred cEEEecCCCCCChhHHHHHHhcCCCccEEEeccccccChHHHHHHHhcCCCCceeccCCCCCccchhHHHHhhcCCCccE
Q 007252 226 ESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEA 305 (611)
Q Consensus 226 ~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~ 305 (611)
++|+++++. ++..... +...+++|++|+++++..... .+..+..+++|+.|+++++.. ... .+..+++|+.
T Consensus 126 ~~L~L~~n~-l~~l~~~-~~~~l~~L~~L~Ls~N~l~~~--~~~~~~~l~~L~~L~L~~N~l--~~~---~~~~l~~L~~ 196 (597)
T 3oja_B 126 TVLVLERND-LSSLPRG-IFHNTPKLTTLSMSNNNLERI--EDDTFQATTSLQNLQLSSNRL--THV---DLSLIPSLFH 196 (597)
T ss_dssp CEEECCSSC-CCCCCTT-TTTTCTTCCEEECCSSCCCBC--CTTTTTTCTTCCEEECTTSCC--SBC---CGGGCTTCSE
T ss_pred CEEEeeCCC-CCCCCHH-HhccCCCCCEEEeeCCcCCCC--ChhhhhcCCcCcEEECcCCCC--CCc---Chhhhhhhhh
Confidence 999999864 4432222 224488999999988643211 122345678888888887753 211 2556778888
Q ss_pred EEccCcccChHHHHHHHHhCCCCcEEeeccCCCCCC-CCCCCCCcEEecCCCccCChhHHHHHHhccCCCcEEecCCCCC
Q 007252 306 ITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTN-TDSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNG 384 (611)
Q Consensus 306 L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 384 (611)
|+++++.+... ...++|++|+++++..... ....++|+.|+++++. +++. .....+++|+.|++++ +.
T Consensus 197 L~l~~n~l~~l------~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~-l~~~---~~l~~l~~L~~L~Ls~-N~ 265 (597)
T 3oja_B 197 ANVSYNLLSTL------AIPIAVEELDASHNSINVVRGPVNVELTILKLQHNN-LTDT---AWLLNYPGLVEVDLSY-NE 265 (597)
T ss_dssp EECCSSCCSEE------ECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSC-CCCC---GGGGGCTTCSEEECCS-SC
T ss_pred hhcccCccccc------cCCchhheeeccCCcccccccccCCCCCEEECCCCC-CCCC---hhhccCCCCCEEECCC-Cc
Confidence 88887766532 1345777777777632211 3334567777776654 2221 1122566777777776 55
Q ss_pred CChhhhhhhccCCCceEEEecCCCCCChHhHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhcCccCceecccccCCCCh
Q 007252 385 VNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKKLKKLNLSYCVNVTD 464 (611)
Q Consensus 385 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 464 (611)
++......+..+++|+.|+++++ .++... .....+++|+.|++++| .++. +......+++|+.|++++| .++.
T Consensus 266 l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~--~~~~~l~~L~~L~Ls~N-~l~~--i~~~~~~l~~L~~L~L~~N-~l~~ 338 (597)
T 3oja_B 266 LEKIMYHPFVKMQRLERLYISNN-RLVALN--LYGQPIPTLKVLDLSHN-HLLH--VERNQPQFDRLENLYLDHN-SIVT 338 (597)
T ss_dssp CCEEESGGGTTCSSCCEEECTTS-CCCEEE--CSSSCCTTCCEEECCSS-CCCC--CGGGHHHHTTCSEEECCSS-CCCC
T ss_pred cCCCCHHHhcCccCCCEEECCCC-CCCCCC--cccccCCCCcEEECCCC-CCCc--cCcccccCCCCCEEECCCC-CCCC
Confidence 65555555666666777776665 333311 11123556666666654 2321 1111122455666666553 2332
Q ss_pred HHHHHhhCCCCCCEEecCC
Q 007252 465 RGMEHIRFIEDLSDLELRG 483 (611)
Q Consensus 465 ~~~~~l~~~~~L~~L~l~~ 483 (611)
.. +..+++|+.|++++
T Consensus 339 ~~---~~~~~~L~~L~l~~ 354 (597)
T 3oja_B 339 LK---LSTHHTLKNLTLSH 354 (597)
T ss_dssp CC---CCTTCCCSEEECCS
T ss_pred cC---hhhcCCCCEEEeeC
Confidence 21 33455555555555
No 48
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.73 E-value=1.8e-18 Score=176.38 Aligned_cols=303 Identities=17% Similarity=0.108 Sum_probs=164.1
Q ss_pred hhccCCceEEeccccCCChHHHHHHHHhCCCccEEeccCCCCCChhhhHHhhcCCCCcEEeccCCCCCChHHHHHHHhcC
Q 007252 93 SWTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRC 172 (611)
Q Consensus 93 ~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 172 (611)
....+++.|+++++ .+.......+ ..+++|++|+++++ .+.......+..+++|++|++.++ .++..... ....+
T Consensus 29 ~~~~~l~~L~L~~n-~l~~~~~~~~-~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~~~l 103 (477)
T 2id5_A 29 GIPTETRLLDLGKN-RIKTLNQDEF-ASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSN-RLKLIPLG-VFTGL 103 (477)
T ss_dssp CCCTTCSEEECCSS-CCCEECTTTT-TTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCCSCCTT-SSTTC
T ss_pred CCCCCCcEEECCCC-ccceECHhHc-cCCCCCCEEECCCC-ccCEeChhhhhCCccCCEEECCCC-cCCccCcc-cccCC
Confidence 34567788888776 3333222222 36778888888865 455555666777788888888773 34332211 12236
Q ss_pred CccceeecccccccChHHHHHHHHcCCcCcEEeccCcccChHHHHHhhhcCCCcEEEecCCCCCChhHHHHHHhcCCCcc
Q 007252 173 VNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLK 252 (611)
Q Consensus 173 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~ 252 (611)
++|++|+++++ .+.... ......+++|+.|+++++.+.......+..+++|++|++.++. ++......+.. +++|+
T Consensus 104 ~~L~~L~Ls~n-~i~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~-l~~L~ 179 (477)
T 2id5_A 104 SNLTKLDISEN-KIVILL-DYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN-LTSIPTEALSH-LHGLI 179 (477)
T ss_dssp TTCCEEECTTS-CCCEEC-TTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCC-CSSCCHHHHTT-CTTCC
T ss_pred CCCCEEECCCC-ccccCC-hhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCc-CcccChhHhcc-cCCCc
Confidence 77888888776 333221 1112456778888888776665555556677788888887753 44433333433 77777
Q ss_pred EEEeccccccChHHHHHHHhcCCCCceeccCCCCCccchhHHHHhhcCCCccEEEccCcccChHHHHHHHHhCCCCcEEe
Q 007252 253 TIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIG 332 (611)
Q Consensus 253 ~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~ 332 (611)
.|++.++..... ....+..+++|+.|++.++.. .. ..........+|++|+++++.+.......+ ..+++|++|+
T Consensus 180 ~L~l~~n~i~~~--~~~~~~~l~~L~~L~l~~~~~-~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~ 254 (477)
T 2id5_A 180 VLRLRHLNINAI--RDYSFKRLYRLKVLEISHWPY-LD-TMTPNCLYGLNLTSLSITHCNLTAVPYLAV-RHLVYLRFLN 254 (477)
T ss_dssp EEEEESCCCCEE--CTTCSCSCTTCCEEEEECCTT-CC-EECTTTTTTCCCSEEEEESSCCCSCCHHHH-TTCTTCCEEE
T ss_pred EEeCCCCcCcEe--ChhhcccCcccceeeCCCCcc-cc-ccCcccccCccccEEECcCCcccccCHHHh-cCccccCeeE
Confidence 777776432211 011234456677777665532 11 111122223366666666665553322222 2455556665
Q ss_pred eccCCCCCCCCCCCCCcEEecCCCccCChhHHHHHHhccCCCcEEecCCCCCCChhhhhhhccCCCceEEEecCCCCCCh
Q 007252 333 LSKCLGVTNTDSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISD 412 (611)
Q Consensus 333 l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 412 (611)
++++. +....... ...+++|++|++++ +.+.......+..+++|+.|+++++ .++.
T Consensus 255 Ls~n~---------------------l~~~~~~~-~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~ 310 (477)
T 2id5_A 255 LSYNP---------------------ISTIEGSM-LHELLRLQEIQLVG-GQLAVVEPYAFRGLNYLRVLNVSGN-QLTT 310 (477)
T ss_dssp CCSSC---------------------CCEECTTS-CTTCTTCCEEECCS-SCCSEECTTTBTTCTTCCEEECCSS-CCSC
T ss_pred CCCCc---------------------CCccChhh-ccccccCCEEECCC-CccceECHHHhcCcccCCEEECCCC-cCce
Confidence 55542 11111111 12455666666666 4555555555566666666666665 4433
Q ss_pred HhHHHHHhcCCCCcEEeccCCC
Q 007252 413 KGLFYIASNCLRIQGLDLYKCS 434 (611)
Q Consensus 413 ~~~~~l~~~~~~L~~L~l~~~~ 434 (611)
.....+ ..+++|++|++++++
T Consensus 311 ~~~~~~-~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 311 LEESVF-HSVGNLETLILDSNP 331 (477)
T ss_dssp CCGGGB-SCGGGCCEEECCSSC
T ss_pred eCHhHc-CCCcccCEEEccCCC
Confidence 222111 245667777776643
No 49
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.68 E-value=3.8e-18 Score=171.18 Aligned_cols=184 Identities=19% Similarity=0.135 Sum_probs=69.3
Q ss_pred ccCCceEEeccccCCChHHHHHHHHhCCCccEEeccCCCCCChhhhHHhhcCC-------------CCcEEeccCCCCCC
Q 007252 95 TRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREAAALSFAS-------------GLKEVKLDKCLNVT 161 (611)
Q Consensus 95 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~-------------~L~~L~l~~~~~~~ 161 (611)
..++++|+++++ .+ ......+ ..+++|++|+++++. +....+..+..+. ++++|++.++ .++
T Consensus 10 ~~~L~~L~l~~n-~l-~~iP~~i-~~L~~L~~L~l~~n~-~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~-~l~ 84 (454)
T 1jl5_A 10 NTFLQEPLRHSS-NL-TEMPVEA-ENVKSKTEYYNAWSE-WERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNL-GLS 84 (454)
T ss_dssp ---------------------------CCHHHHHHHHHH-HHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTS-CCS
T ss_pred cccchhhhcccC-ch-hhCChhH-hcccchhhhhccCCc-ccccCCcccccchhcchhhhhhhhccCCCEEEecCC-ccc
Confidence 467888888877 33 2222233 477888888887542 1111122222222 3466666653 222
Q ss_pred hHHHHHHHhcCCccceeecccccccChHHHHHHHHcCCcCcEEeccCcccChHHHHHhhhc-CCCcEEEecCCCCCChhH
Q 007252 162 DVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATL-AKLESLVMVGCPCVDDTG 240 (611)
Q Consensus 162 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~ 240 (611)
.. ....++|++|+++++ .++.. ....++|+.|+++++.+.. +... ++|++|+++++. ++.
T Consensus 85 ~l-----p~~~~~L~~L~l~~n-~l~~l-----p~~~~~L~~L~l~~n~l~~-----l~~~~~~L~~L~L~~n~-l~~-- 145 (454)
T 1jl5_A 85 SL-----PELPPHLESLVASCN-SLTEL-----PELPQSLKSLLVDNNNLKA-----LSDLPPLLEYLGVSNNQ-LEK-- 145 (454)
T ss_dssp CC-----CSCCTTCSEEECCSS-CCSSC-----CCCCTTCCEEECCSSCCSC-----CCSCCTTCCEEECCSSC-CSS--
T ss_pred cC-----CCCcCCCCEEEccCC-cCCcc-----ccccCCCcEEECCCCccCc-----ccCCCCCCCEEECcCCC-CCC--
Confidence 20 001345666666554 22221 1123556666666554432 1112 456666665543 222
Q ss_pred HHHHHhcCCCccEEEeccccccChHHHHHHHhcCCCCceeccCCCCCccchhHHHHhhcCCCccEEEccCccc
Q 007252 241 LRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARI 313 (611)
Q Consensus 241 ~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 313 (611)
++.+ ..+++|++|+++++.... ++ ...++|++|++.++.. .. ...+..+++|+.|+++++.+
T Consensus 146 lp~~-~~l~~L~~L~l~~N~l~~---lp---~~~~~L~~L~L~~n~l--~~--l~~~~~l~~L~~L~l~~N~l 207 (454)
T 1jl5_A 146 LPEL-QNSSFLKIIDVDNNSLKK---LP---DLPPSLEFIAAGNNQL--EE--LPELQNLPFLTAIYADNNSL 207 (454)
T ss_dssp CCCC-TTCTTCCEEECCSSCCSC---CC---CCCTTCCEEECCSSCC--SS--CCCCTTCTTCCEEECCSSCC
T ss_pred Cccc-CCCCCCCEEECCCCcCcc---cC---CCcccccEEECcCCcC--Cc--CccccCCCCCCEEECCCCcC
Confidence 1122 225555666555542211 00 1123555555555432 11 11344455555555555543
No 50
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.65 E-value=3.4e-15 Score=145.78 Aligned_cols=244 Identities=16% Similarity=0.148 Sum_probs=159.4
Q ss_pred chhHHHHhhcCCCccEEEccCcccChHHHHHH---HHhCC-CCcEEeeccCCCCCCCCCCCCCcEEecCCCccCChhH--
Q 007252 290 STTLLHHMRDLKNLEAITMDGARISDSCFQTI---SFNCK-SLVEIGLSKCLGVTNTDSCRGLVCLKIESCNMITEKG-- 363 (611)
Q Consensus 290 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~---~~~~~-~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-- 363 (611)
+......+...++|++|+++++.+.+.....+ ...++ +|++|+++++ . +++.+
T Consensus 11 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N--------------------~-l~~~~~~ 69 (362)
T 3goz_A 11 SNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGN--------------------S-LGFKNSD 69 (362)
T ss_dssp CCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSS--------------------C-GGGSCHH
T ss_pred hHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCC--------------------C-CCHHHHH
Confidence 33444445555569999999988776554322 22344 5555555544 2 33333
Q ss_pred -HHHHHhcc-CCCcEEecCCCCCCChhhhhhhc----cC-CCceEEEecCCCCCChHhHHHHHhc----CCCCcEEeccC
Q 007252 364 -LYQLGSFC-LRLEEIDLTDCNGVNDKGLEYLS----RC-SELLFLKLGLCENISDKGLFYIASN----CLRIQGLDLYK 432 (611)
Q Consensus 364 -~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~l~----~~-~~L~~L~l~~~~~~~~~~~~~l~~~----~~~L~~L~l~~ 432 (611)
+....... ++|++|++++ +.+++.+...+. .+ ++|++|++++| .+++.+...+... +++|++|++++
T Consensus 70 ~l~~~l~~~~~~L~~L~Ls~-n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~ 147 (362)
T 3goz_A 70 ELVQILAAIPANVTSLNLSG-NFLSYKSSDELVKTLAAIPFTITVLDLGWN-DFSSKSSSEFKQAFSNLPASITSLNLRG 147 (362)
T ss_dssp HHHHHHHTSCTTCCEEECCS-SCGGGSCHHHHHHHHHTSCTTCCEEECCSS-CGGGSCHHHHHHHHTTSCTTCCEEECTT
T ss_pred HHHHHHhccCCCccEEECcC-CcCChHHHHHHHHHHHhCCCCccEEECcCC-cCCcHHHHHHHHHHHhCCCceeEEEccC
Confidence 33333333 8999999999 678776665443 44 89999999998 6777666655432 46999999999
Q ss_pred CCCCCHHHHHHH---HhcCc-cCceecccccCCCChHHHHH----hhCC-CCCCEEecCCCccccHHHHHHHH---hc-C
Q 007252 433 CSGIGDDGLAAL---SNGCK-KLKKLNLSYCVNVTDRGMEH----IRFI-EDLSDLELRGLTKITSAGLTALA---AG-C 499 (611)
Q Consensus 433 ~~~~~~~~~~~~---~~~~~-~L~~L~l~~c~~l~~~~~~~----l~~~-~~L~~L~l~~c~~l~~~~~~~~~---~~-~ 499 (611)
| .+++.+...+ ....+ +|++|++++| .+++.+... +..+ ++|+.|++++| .+++.+...+. .. .
T Consensus 148 N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~i~~~~~~~l~~~l~~~~ 224 (362)
T 3goz_A 148 N-DLGIKSSDELIQILAAIPANVNSLNLRGN-NLASKNCAELAKFLASIPASVTSLDLSAN-LLGLKSYAELAYIFSSIP 224 (362)
T ss_dssp S-CGGGSCHHHHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHHSC
T ss_pred C-cCCHHHHHHHHHHHhcCCccccEeeecCC-CCchhhHHHHHHHHHhCCCCCCEEECCCC-CCChhHHHHHHHHHhcCC
Confidence 6 6765544443 23344 9999999995 576655543 4456 59999999995 57664333222 23 4
Q ss_pred CccCEeeccccCCCCHHHHHHH---HhhCCCCCEEEeccCC---CChhHHHHHh----ccccccccceeecc
Q 007252 500 KRLADLDLKHCAKIDDSGFWAL---AYYSQNLRQINLSYCA---LSDMALCMVM----GNMTRLQDAKLVHL 561 (611)
Q Consensus 500 ~~L~~L~l~~c~~l~~~~~~~~---~~~~~~L~~L~l~~~~---l~~~~~~~~l----~~~~~L~~l~l~~~ 561 (611)
++|+.|++++| .+++.+...+ ...+++|+.|++++|. +++.+. ..+ ..+++|+.|++.+.
T Consensus 225 ~~L~~L~Ls~N-~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~-~~l~~~~~~l~~L~~LdL~~N 294 (362)
T 3goz_A 225 NHVVSLNLCLN-CLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQC-KALGAAFPNIQKIILVDKNGK 294 (362)
T ss_dssp TTCCEEECCSS-CCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHH-HHHHTTSTTCCEEEEECTTSC
T ss_pred CCceEEECcCC-CCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHH-HHHHHHhccCCceEEEecCCC
Confidence 69999999999 8877555443 3557899999999998 666555 332 33455555655444
No 51
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.65 E-value=7.4e-17 Score=161.76 Aligned_cols=350 Identities=17% Similarity=0.056 Sum_probs=173.3
Q ss_pred CCCccEEeccCCCCCChhhhHHhhcCCCCcEEeccCCCC---CCh-------HHHHHHHh-cCCccceeecccccccChH
Q 007252 121 CPLLESVDLSYCCGFGDREAAALSFASGLKEVKLDKCLN---VTD-------VGLAKIAV-RCVNLERLSLKWCMEISDL 189 (611)
Q Consensus 121 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~---~~~-------~~~~~~~~-~~~~L~~L~l~~~~~~~~~ 189 (611)
..+|++|+++++. + ...+..++++++|++|++.++.. +.. -....+.. ...++++|+++++ .++..
T Consensus 10 ~~~L~~L~l~~n~-l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~-~l~~l 86 (454)
T 1jl5_A 10 NTFLQEPLRHSSN-L-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNL-GLSSL 86 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTS-CCSCC
T ss_pred cccchhhhcccCc-h-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCC-ccccC
Confidence 4678888888653 4 33445678889999998876410 000 00000100 0134577777766 33321
Q ss_pred HHHHHHHcCCcCcEEeccCcccChHHHHHhhhcCCCcEEEecCCCCCChhHHHHHHhcCCCccEEEeccccccChHHHHH
Q 007252 190 GIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLIS 269 (611)
Q Consensus 190 ~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~ 269 (611)
. ...++|+.|+++++.+... . ...++|++|+++++. ++. +....++|++|+++++.... ++.
T Consensus 87 p-----~~~~~L~~L~l~~n~l~~l--p--~~~~~L~~L~l~~n~-l~~-----l~~~~~~L~~L~L~~n~l~~---lp~ 148 (454)
T 1jl5_A 87 P-----ELPPHLESLVASCNSLTEL--P--ELPQSLKSLLVDNNN-LKA-----LSDLPPLLEYLGVSNNQLEK---LPE 148 (454)
T ss_dssp C-----SCCTTCSEEECCSSCCSSC--C--CCCTTCCEEECCSSC-CSC-----CCSCCTTCCEEECCSSCCSS---CCC
T ss_pred C-----CCcCCCCEEEccCCcCCcc--c--cccCCCcEEECCCCc-cCc-----ccCCCCCCCEEECcCCCCCC---Ccc
Confidence 1 1235777777777755431 1 123677777777643 322 11112577777777754322 222
Q ss_pred HHhcCCCCceeccCCCCCccchhHHHHhhcCCCccEEEccCcccChHHHHHHHHhCCCCcEEeeccCCCCCCCCCCCCCc
Q 007252 270 VIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTDSCRGLV 349 (611)
Q Consensus 270 ~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~ 349 (611)
+..+++|++|+++++.. .. .. ...++|++|+++++.+... .. ...+++|++|+++++....-....++|+
T Consensus 149 -~~~l~~L~~L~l~~N~l--~~-lp---~~~~~L~~L~L~~n~l~~l--~~-~~~l~~L~~L~l~~N~l~~l~~~~~~L~ 218 (454)
T 1jl5_A 149 -LQNSSFLKIIDVDNNSL--KK-LP---DLPPSLEFIAAGNNQLEEL--PE-LQNLPFLTAIYADNNSLKKLPDLPLSLE 218 (454)
T ss_dssp -CTTCTTCCEEECCSSCC--SC-CC---CCCTTCCEEECCSSCCSSC--CC-CTTCTTCCEEECCSSCCSSCCCCCTTCC
T ss_pred -cCCCCCCCEEECCCCcC--cc-cC---CCcccccEEECcCCcCCcC--cc-ccCCCCCCEEECCCCcCCcCCCCcCccc
Confidence 45667777777776643 11 00 1124777777777765542 11 2356777777777663221122234677
Q ss_pred EEecCCCccCChhHHHHHHhccCCCcEEecCCCCCCChhhhhhhccCCCceEEEecCCCCCChHhHHHHHhcCCCCcEEe
Q 007252 350 CLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLD 429 (611)
Q Consensus 350 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~ 429 (611)
.|+++++. +... .. ...+++|++|++++ +.++... . ..++|+.|+++++ .++. +...+++|++|+
T Consensus 219 ~L~l~~n~-l~~l--p~-~~~l~~L~~L~l~~-N~l~~l~--~--~~~~L~~L~l~~N-~l~~-----l~~~~~~L~~L~ 283 (454)
T 1jl5_A 219 SIVAGNNI-LEEL--PE-LQNLPFLTTIYADN-NLLKTLP--D--LPPSLEALNVRDN-YLTD-----LPELPQSLTFLD 283 (454)
T ss_dssp EEECCSSC-CSSC--CC-CTTCTTCCEEECCS-SCCSSCC--S--CCTTCCEEECCSS-CCSC-----CCCCCTTCCEEE
T ss_pred EEECcCCc-CCcc--cc-cCCCCCCCEEECCC-CcCCccc--c--cccccCEEECCCC-cccc-----cCcccCcCCEEE
Confidence 77777653 2211 11 22566777777776 4444311 1 2356777777766 3332 112346777777
Q ss_pred ccCCCCCCHHHHHHHHhcCccCceecccccCCCChHHHHHhhCC-CCCCEEecCCCccccHHHHHHHHhcCCccCEeecc
Q 007252 430 LYKCSGIGDDGLAALSNGCKKLKKLNLSYCVNVTDRGMEHIRFI-EDLSDLELRGLTKITSAGLTALAAGCKRLADLDLK 508 (611)
Q Consensus 430 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~-~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~ 508 (611)
+++| .++.. . ...++|+.|+++++ .++. +..+ ++|+.|+++++ .++. +...+++|+.|+++
T Consensus 284 ls~N-~l~~l--~---~~~~~L~~L~l~~N-~l~~-----i~~~~~~L~~L~Ls~N-~l~~-----lp~~~~~L~~L~L~ 345 (454)
T 1jl5_A 284 VSEN-IFSGL--S---ELPPNLYYLNASSN-EIRS-----LCDLPPSLEELNVSNN-KLIE-----LPALPPRLERLIAS 345 (454)
T ss_dssp CCSS-CCSEE--S---CCCTTCCEEECCSS-CCSE-----ECCCCTTCCEEECCSS-CCSC-----CCCCCTTCCEEECC
T ss_pred CcCC-ccCcc--c---CcCCcCCEEECcCC-cCCc-----ccCCcCcCCEEECCCC-cccc-----ccccCCcCCEEECC
Confidence 7775 33320 0 11257777777764 3443 2234 47888888773 4543 12235778888888
Q ss_pred ccCCCCHHHHHHHHhhCCCCCEEEeccCCCCh
Q 007252 509 HCAKIDDSGFWALAYYSQNLRQINLSYCALSD 540 (611)
Q Consensus 509 ~c~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~ 540 (611)
+| .++... . .+++|++|++++|.++.
T Consensus 346 ~N-~l~~lp--~---~l~~L~~L~L~~N~l~~ 371 (454)
T 1jl5_A 346 FN-HLAEVP--E---LPQNLKQLHVEYNPLRE 371 (454)
T ss_dssp SS-CCSCCC--C---CCTTCCEEECCSSCCSS
T ss_pred CC-cccccc--c---hhhhccEEECCCCCCCc
Confidence 87 555321 1 35778888888887665
No 52
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.63 E-value=2.7e-15 Score=146.49 Aligned_cols=252 Identities=12% Similarity=0.080 Sum_probs=175.4
Q ss_pred HHHHHhcCCCCceeccCCCCCccchh----HHHHhhcCC-CccEEEccCcccChHHHHHHHH---h-CCCCcEEeeccCC
Q 007252 267 LISVIRGHSGLLQLDAGHCFSELSTT----LLHHMRDLK-NLEAITMDGARISDSCFQTISF---N-CKSLVEIGLSKCL 337 (611)
Q Consensus 267 l~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~l~~~~-~L~~L~l~~~~~~~~~l~~~~~---~-~~~L~~L~l~~~~ 337 (611)
++.+....++|++|+++++.. ... ....+..++ +|++|+++++.+.+.+...+.. . .++|++|+++++.
T Consensus 14 ~~~~~~~~~~L~~L~Ls~n~l--~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~ 91 (362)
T 3goz_A 14 VEEFTSIPHGVTSLDLSLNNL--YSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNF 91 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSCG--GGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC
T ss_pred HHHHHhCCCCceEEEccCCCC--ChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCc
Confidence 556666666799999999853 333 347788898 9999999999887655444432 2 2666666666552
Q ss_pred CCCCCCCCCCCcEEecCCCccCChhHHHHHHhcc-CCCcEEecCCCCCCChhhhhhhc----c-CCCceEEEecCCCCCC
Q 007252 338 GVTNTDSCRGLVCLKIESCNMITEKGLYQLGSFC-LRLEEIDLTDCNGVNDKGLEYLS----R-CSELLFLKLGLCENIS 411 (611)
Q Consensus 338 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~l~----~-~~~L~~L~l~~~~~~~ 411 (611)
+ .......+......+ ++|++|++++ +.+++.+...+. . .++|++|++++| .++
T Consensus 92 -l-----------------~~~~~~~l~~~l~~~~~~L~~L~Ls~-N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~ 151 (362)
T 3goz_A 92 -L-----------------SYKSSDELVKTLAAIPFTITVLDLGW-NDFSSKSSSEFKQAFSNLPASITSLNLRGN-DLG 151 (362)
T ss_dssp -G-----------------GGSCHHHHHHHHHTSCTTCCEEECCS-SCGGGSCHHHHHHHHTTSCTTCCEEECTTS-CGG
T ss_pred -C-----------------ChHHHHHHHHHHHhCCCCccEEECcC-CcCCcHHHHHHHHHHHhCCCceeEEEccCC-cCC
Confidence 0 012223333334345 7999999999 678877765544 3 369999999998 777
Q ss_pred hHhHHHHHh---cCC-CCcEEeccCCCCCCHHHH---HHHHhcC-ccCceecccccCCCChHHHHHh----hC-CCCCCE
Q 007252 412 DKGLFYIAS---NCL-RIQGLDLYKCSGIGDDGL---AALSNGC-KKLKKLNLSYCVNVTDRGMEHI----RF-IEDLSD 478 (611)
Q Consensus 412 ~~~~~~l~~---~~~-~L~~L~l~~~~~~~~~~~---~~~~~~~-~~L~~L~l~~c~~l~~~~~~~l----~~-~~~L~~ 478 (611)
+.+...++. ..+ +|++|++++| .+++.+. ......+ ++|++|++++| .+++.+...+ .. .++|++
T Consensus 152 ~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~i~~~~~~~l~~~l~~~~~~L~~ 229 (362)
T 3goz_A 152 IKSSDELIQILAAIPANVNSLNLRGN-NLASKNCAELAKFLASIPASVTSLDLSAN-LLGLKSYAELAYIFSSIPNHVVS 229 (362)
T ss_dssp GSCHHHHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHHSCTTCCE
T ss_pred HHHHHHHHHHHhcCCccccEeeecCC-CCchhhHHHHHHHHHhCCCCCCEEECCCC-CCChhHHHHHHHHHhcCCCCceE
Confidence 766655532 344 9999999997 5654443 3344456 49999999995 6777555433 33 569999
Q ss_pred EecCCCccccHHHH---HHHHhcCCccCEeeccccC--CCCHHHHHHHHhh---CCCCCEEEeccCCCChhHH
Q 007252 479 LELRGLTKITSAGL---TALAAGCKRLADLDLKHCA--KIDDSGFWALAYY---SQNLRQINLSYCALSDMAL 543 (611)
Q Consensus 479 L~l~~c~~l~~~~~---~~~~~~~~~L~~L~l~~c~--~l~~~~~~~~~~~---~~~L~~L~l~~~~l~~~~~ 543 (611)
|++++| .+++.+. ..+...+++|+.|++++|. .++..+...+... +++|++|++++|++.+...
T Consensus 230 L~Ls~N-~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~ 301 (362)
T 3goz_A 230 LNLCLN-CLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS 301 (362)
T ss_dssp EECCSS-CCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred EECcCC-CCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence 999994 6766433 4444567999999999993 3777777777655 4567888999999887643
No 53
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.62 E-value=1.5e-16 Score=153.60 Aligned_cols=200 Identities=15% Similarity=0.102 Sum_probs=115.2
Q ss_pred CCCcEEecCCCccCChhHHHHHHhccCCCcEEecCCCCCCChh--hhhhhccCCCceEEEecCCCCCChHhHHHHHhcCC
Q 007252 346 RGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDK--GLEYLSRCSELLFLKLGLCENISDKGLFYIASNCL 423 (611)
Q Consensus 346 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 423 (611)
++|++|+++++. +....... ...+++|+.|++++ +.+... ....+..+++|+.|+++++ .++.... ...+
T Consensus 121 ~~L~~L~l~~n~-l~~~~~~~-~~~l~~L~~L~l~~-n~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~l~~----~~~~ 192 (330)
T 1xku_A 121 KTLQELRVHENE-ITKVRKSV-FNGLNQMIVVELGT-NPLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQ----GLPP 192 (330)
T ss_dssp TTCCEEECCSSC-CCBBCHHH-HTTCTTCCEEECCS-SCCCGGGBCTTGGGGCTTCCEEECCSS-CCCSCCS----SCCT
T ss_pred ccccEEECCCCc-ccccCHhH-hcCCccccEEECCC-CcCCccCcChhhccCCCCcCEEECCCC-ccccCCc----cccc
Confidence 566666666643 33322222 23678888888887 566542 2345667888888888876 4432111 1236
Q ss_pred CCcEEeccCCCCCCHHHHHHHHhcCccCceecccccCCCChHHHHHhhCCCCCCEEecCCCccccHHHHHHHHhcCCccC
Q 007252 424 RIQGLDLYKCSGIGDDGLAALSNGCKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLA 503 (611)
Q Consensus 424 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~ 503 (611)
+|++|+++++ .++...... ...+++|++|+++++ .++......+..+++|++|++++| .++. +......+++|+
T Consensus 193 ~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~--lp~~l~~l~~L~ 266 (330)
T 1xku_A 193 SLTELHLDGN-KITKVDAAS-LKGLNNLAKLGLSFN-SISAVDNGSLANTPHLRELHLNNN-KLVK--VPGGLADHKYIQ 266 (330)
T ss_dssp TCSEEECTTS-CCCEECTGG-GTTCTTCCEEECCSS-CCCEECTTTGGGSTTCCEEECCSS-CCSS--CCTTTTTCSSCC
T ss_pred cCCEEECCCC-cCCccCHHH-hcCCCCCCEEECCCC-cCceeChhhccCCCCCCEEECCCC-cCcc--CChhhccCCCcC
Confidence 7888888875 444322222 235678888888773 566555455667788888888874 4442 111133567788
Q ss_pred EeeccccCCCCHHHHHHHHh-----hCCCCCEEEeccCCCChhHHH-HHhccccccccceeec
Q 007252 504 DLDLKHCAKIDDSGFWALAY-----YSQNLRQINLSYCALSDMALC-MVMGNMTRLQDAKLVH 560 (611)
Q Consensus 504 ~L~l~~c~~l~~~~~~~~~~-----~~~~L~~L~l~~~~l~~~~~~-~~l~~~~~L~~l~l~~ 560 (611)
.|++++| .++..+...+.. ..+.++.|++++|++...... ..+..+++++.+++.+
T Consensus 267 ~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~ 328 (330)
T 1xku_A 267 VVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGN 328 (330)
T ss_dssp EEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC--
T ss_pred EEECCCC-cCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecc
Confidence 8888877 665433222211 135677888888876532210 3455666666666544
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.59 E-value=6.1e-16 Score=150.76 Aligned_cols=255 Identities=14% Similarity=0.105 Sum_probs=123.4
Q ss_pred CCCceeccCCCCCccchhHHHHhhcCCCccEEEccCcccChHHHHHHHHhCCCCcEEeeccCCCCCCCCCCCCCcEEecC
Q 007252 275 SGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTDSCRGLVCLKIE 354 (611)
Q Consensus 275 ~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~ 354 (611)
++|++|+++++. +.......+..+++|+.|+++++.+....... +..+++|++|+++
T Consensus 52 ~~L~~L~l~~n~--i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---------------------~~~l~~L~~L~Ls 108 (353)
T 2z80_A 52 EAVKSLDLSNNR--ITYISNSDLQRCVNLQALVLTSNGINTIEEDS---------------------FSSLGSLEHLDLS 108 (353)
T ss_dssp TTCCEEECTTSC--CCEECTTTTTTCTTCCEEECTTSCCCEECTTT---------------------TTTCTTCCEEECC
T ss_pred ccCcEEECCCCc--CcccCHHHhccCCCCCEEECCCCccCccCHhh---------------------cCCCCCCCEEECC
Confidence 467777777663 23323334566667777777666554321111 2333444444444
Q ss_pred CCccCChhHHHHHHhccCCCcEEecCCCCCCChhhh-hhhccCCCceEEEecCCCCCChHhHHHHHhcCCCCcEEeccCC
Q 007252 355 SCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGL-EYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKC 433 (611)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 433 (611)
++. ++...... ...+++|++|++++ +.++.... ..+..+++|++|+++++..++......+. .+++|++|+++++
T Consensus 109 ~n~-l~~~~~~~-~~~l~~L~~L~L~~-n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-~l~~L~~L~l~~n 184 (353)
T 2z80_A 109 YNY-LSNLSSSW-FKPLSSLTFLNLLG-NPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA-GLTFLEELEIDAS 184 (353)
T ss_dssp SSC-CSSCCHHH-HTTCTTCSEEECTT-CCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTT-TCCEEEEEEEEET
T ss_pred CCc-CCcCCHhH-hCCCccCCEEECCC-CCCcccCchhhhccCCCCcEEECCCCccccccCHHHcc-CCCCCCEEECCCC
Confidence 432 22211111 22455666666665 44443322 33445666666666655333322211111 4556666666654
Q ss_pred CCCCHHHHHHHHhcCccCceecccccCCCChHHHHHhhCCCCCCEEecCCCccccHHHHHH--HHhcCCccCEeeccccC
Q 007252 434 SGIGDDGLAALSNGCKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTA--LAAGCKRLADLDLKHCA 511 (611)
Q Consensus 434 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~c~~l~~~~~~~--~~~~~~~L~~L~l~~c~ 511 (611)
.++..... ....+++|++|+++++ .++......+..+++|+.|+++++ .++...... .....+.++.+++.++
T Consensus 185 -~l~~~~~~-~l~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~~~~~~l~~l~L~~~- 259 (353)
T 2z80_A 185 -DLQSYEPK-SLKSIQNVSHLILHMK-QHILLLEIFVDVTSSVECLELRDT-DLDTFHFSELSTGETNSLIKKFTFRNV- 259 (353)
T ss_dssp -TCCEECTT-TTTTCSEEEEEEEECS-CSTTHHHHHHHHTTTEEEEEEESC-BCTTCCCC------CCCCCCEEEEESC-
T ss_pred -CcCccCHH-HHhccccCCeecCCCC-ccccchhhhhhhcccccEEECCCC-ccccccccccccccccchhhccccccc-
Confidence 23211111 1123556666666663 344444333444666666666653 333211110 1123455666666666
Q ss_pred CCCHHHHHHH---HhhCCCCCEEEeccCCCChhHHHHHhccccccccceeeccc
Q 007252 512 KIDDSGFWAL---AYYSQNLRQINLSYCALSDMALCMVMGNMTRLQDAKLVHLT 562 (611)
Q Consensus 512 ~l~~~~~~~~---~~~~~~L~~L~l~~~~l~~~~~~~~l~~~~~L~~l~l~~~~ 562 (611)
.+++..+..+ ...+++|++|++++|.++..+. ..+..+++|+.|++.+++
T Consensus 260 ~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~-~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 260 KITDESLFQVMKLLNQISGLLELEFSRNQLKSVPD-GIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp BCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSC
T ss_pred cccCcchhhhHHHHhcccCCCEEECCCCCCCccCH-HHHhcCCCCCEEEeeCCC
Confidence 5655444333 2335667777777776665443 334566666666666653
No 55
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.58 E-value=8.2e-17 Score=155.47 Aligned_cols=177 Identities=15% Similarity=0.122 Sum_probs=89.1
Q ss_pred ccCCCcEEecCCCCCCChhh--hhhhccCCCceEEEecCCCCCChHhHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhc
Q 007252 370 FCLRLEEIDLTDCNGVNDKG--LEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNG 447 (611)
Q Consensus 370 ~~~~L~~L~l~~~~~~~~~~--~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 447 (611)
.+++|++|++++ +.++..+ ...+..+ +|+.|+++++ .++.... ...++|++|+++++ .++...... ...
T Consensus 145 ~l~~L~~L~l~~-n~l~~~~~~~~~~~~l-~L~~L~l~~n-~l~~l~~----~~~~~L~~L~l~~n-~i~~~~~~~-l~~ 215 (332)
T 2ft3_A 145 GLRNMNCIEMGG-NPLENSGFEPGAFDGL-KLNYLRISEA-KLTGIPK----DLPETLNELHLDHN-KIQAIELED-LLR 215 (332)
T ss_dssp SCSSCCEEECCS-CCCBGGGSCTTSSCSC-CCSCCBCCSS-BCSSCCS----SSCSSCSCCBCCSS-CCCCCCTTS-STT
T ss_pred CCccCCEEECCC-CccccCCCCcccccCC-ccCEEECcCC-CCCccCc----cccCCCCEEECCCC-cCCccCHHH-hcC
Confidence 456677777766 4554321 2233334 6666666665 3332110 12256677777664 333221111 134
Q ss_pred CccCceecccccCCCChHHHHHhhCCCCCCEEecCCCccccHHHHHHHHhcCCccCEeeccccCCCCHHHHHHHHhh---
Q 007252 448 CKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYY--- 524 (611)
Q Consensus 448 ~~~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~--- 524 (611)
+++|+.|+++++ .++......+..+++|+.|+++++ .++. +......+++|+.|++++| .++..+...+...
T Consensus 216 l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~--lp~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~ 290 (332)
T 2ft3_A 216 YSKLYRLGLGHN-QIRMIENGSLSFLPTLRELHLDNN-KLSR--VPAGLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFG 290 (332)
T ss_dssp CTTCSCCBCCSS-CCCCCCTTGGGGCTTCCEEECCSS-CCCB--CCTTGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCC
T ss_pred CCCCCEEECCCC-cCCcCChhHhhCCCCCCEEECCCC-cCee--cChhhhcCccCCEEECCCC-CCCccChhHccccccc
Confidence 567777777663 455444445566677777777763 4432 1111234667777777776 5554332222211
Q ss_pred --CCCCCEEEeccCCCC--hhHHHHHhccccccccceeecc
Q 007252 525 --SQNLRQINLSYCALS--DMALCMVMGNMTRLQDAKLVHL 561 (611)
Q Consensus 525 --~~~L~~L~l~~~~l~--~~~~~~~l~~~~~L~~l~l~~~ 561 (611)
.++|+.|++++|++. .... .++..+++|+.+++.++
T Consensus 291 ~~~~~l~~L~l~~N~~~~~~~~~-~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 291 VKRAYYNGISLFNNPVPYWEVQP-ATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp SSSCCBSEEECCSSSSCGGGSCG-GGGTTBCCSTTEEC---
T ss_pred cccccccceEeecCcccccccCc-ccccccchhhhhhcccc
Confidence 355667777777654 2222 34556666666665544
No 56
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.58 E-value=5.7e-16 Score=149.49 Aligned_cols=81 Identities=20% Similarity=0.151 Sum_probs=41.5
Q ss_pred CCCcEEecCCCCCCChhhhhhhccCCCceEEEecCCCCCChHhHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhcCccC
Q 007252 372 LRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKKL 451 (611)
Q Consensus 372 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 451 (611)
++|++|++++ +.++......+..+++|+.|+++++ .++......+. .+++|++|++++| .++. +......+++|
T Consensus 192 ~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~-~l~~L~~L~L~~N-~l~~--lp~~l~~l~~L 265 (330)
T 1xku_A 192 PSLTELHLDG-NKITKVDAASLKGLNNLAKLGLSFN-SISAVDNGSLA-NTPHLRELHLNNN-KLVK--VPGGLADHKYI 265 (330)
T ss_dssp TTCSEEECTT-SCCCEECTGGGTTCTTCCEEECCSS-CCCEECTTTGG-GSTTCCEEECCSS-CCSS--CCTTTTTCSSC
T ss_pred ccCCEEECCC-CcCCccCHHHhcCCCCCCEEECCCC-cCceeChhhcc-CCCCCCEEECCCC-cCcc--CChhhccCCCc
Confidence 4666666666 4555554555566666666666665 34332221222 4566666666654 3321 11112334556
Q ss_pred ceecccc
Q 007252 452 KKLNLSY 458 (611)
Q Consensus 452 ~~L~l~~ 458 (611)
++|++++
T Consensus 266 ~~L~l~~ 272 (330)
T 1xku_A 266 QVVYLHN 272 (330)
T ss_dssp CEEECCS
T ss_pred CEEECCC
Confidence 6665555
No 57
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.56 E-value=3.8e-16 Score=149.48 Aligned_cols=247 Identities=18% Similarity=0.136 Sum_probs=127.3
Q ss_pred HHHHHhcCCCCceeccCCCCCccchhHHHHhhcCCCccEEEccCcccChHHHHHHHHhCCCCcEEeeccCCCCCCCCCCC
Q 007252 267 LISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTDSCR 346 (611)
Q Consensus 267 l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 346 (611)
+..+...+++|++|+++++. +.......+..+++|+.|+++++.+....- ...+++|++|+++++. ++...
T Consensus 26 ~~~~~~~~~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~Ls~n~-l~~l~--- 96 (317)
T 3o53_A 26 LASLRQSAWNVKELDLSGNP--LSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNY-VQELL--- 96 (317)
T ss_dssp HHHHHTTGGGCSEEECTTSC--CCCCCHHHHTTCTTCCEEECTTSCCEEEEE---ETTCTTCCEEECCSSE-EEEEE---
T ss_pred HHHHhccCCCCCEEECcCCc--cCcCCHHHhhCCCcCCEEECCCCcCCcchh---hhhcCCCCEEECcCCc-ccccc---
Confidence 34455556677777777763 344444566777777777777765532110 2244555555555442 11111
Q ss_pred CCcEEecCCCccCChhHHHHHHhccCCCcEEecCCCCCCChhhhhhhccCCCceEEEecCCCCCChHhHHHHHhcCCCCc
Q 007252 347 GLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQ 426 (611)
Q Consensus 347 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~ 426 (611)
..++|++|++++ +.++..... .+++|++|+++++ .++......+ ..+++|+
T Consensus 97 -----------------------~~~~L~~L~l~~-n~l~~~~~~---~~~~L~~L~l~~N-~l~~~~~~~~-~~l~~L~ 147 (317)
T 3o53_A 97 -----------------------VGPSIETLHAAN-NNISRVSCS---RGQGKKNIYLANN-KITMLRDLDE-GCRSRVQ 147 (317)
T ss_dssp -----------------------ECTTCCEEECCS-SCCSEEEEC---CCSSCEEEECCSS-CCCSGGGBCT-GGGSSEE
T ss_pred -----------------------CCCCcCEEECCC-CccCCcCcc---ccCCCCEEECCCC-CCCCccchhh-hccCCCC
Confidence 224555666555 344332221 2455666666555 3333211111 1345566
Q ss_pred EEeccCCCCCCHHHHHHHHhcCccCceecccccCCCChHHHHHhhCCCCCCEEecCCCccccHHHHHHHHhcCCccCEee
Q 007252 427 GLDLYKCSGIGDDGLAALSNGCKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLD 506 (611)
Q Consensus 427 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~ 506 (611)
+|+++++ .++......+...+++|++|+++++ .++.. .....+++|++|+++++ .++..... ...+++|+.|+
T Consensus 148 ~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~--~~~~~l~~L~~L~Ls~N-~l~~l~~~--~~~l~~L~~L~ 220 (317)
T 3o53_A 148 YLDLKLN-EIDTVNFAELAASSDTLEHLNLQYN-FIYDV--KGQVVFAKLKTLDLSSN-KLAFMGPE--FQSAAGVTWIS 220 (317)
T ss_dssp EEECTTS-CCCEEEGGGGGGGTTTCCEEECTTS-CCCEE--ECCCCCTTCCEEECCSS-CCCEECGG--GGGGTTCSEEE
T ss_pred EEECCCC-CCCcccHHHHhhccCcCCEEECCCC-cCccc--ccccccccCCEEECCCC-cCCcchhh--hcccCcccEEE
Confidence 6666654 3433222233334566666666663 34332 11223667777777763 44332111 23467777777
Q ss_pred ccccCCCCHHHHHHHHhhCCCCCEEEeccCCCChhHHHHHhccccccccceeecc
Q 007252 507 LKHCAKIDDSGFWALAYYSQNLRQINLSYCALSDMALCMVMGNMTRLQDAKLVHL 561 (611)
Q Consensus 507 l~~c~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~l~~~~~L~~l~l~~~ 561 (611)
+++| .++.. ......+++|+.|++++|+++.......+..+++|+.+++.++
T Consensus 221 L~~N-~l~~l--~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 221 LRNN-KLVLI--EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp CTTS-CCCEE--CTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CcCC-cccch--hhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCc
Confidence 7777 55532 1122345778888888887773233266667777777766544
No 58
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.55 E-value=1.5e-14 Score=140.95 Aligned_cols=109 Identities=14% Similarity=0.060 Sum_probs=49.7
Q ss_pred HhhcCCCccEEEccCcccChHHHHHHHHhCCCCcEEeeccCCCCCC-------CCCCCCCcEEecCCCccCChhHHHH--
Q 007252 296 HMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTN-------TDSCRGLVCLKIESCNMITEKGLYQ-- 366 (611)
Q Consensus 296 ~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~-------~~~~~~L~~L~l~~~~~~~~~~~~~-- 366 (611)
.+..+++|++|+++++.+...... ....+++|++|+++++..... ....+.++.+++.++. +.+..+..
T Consensus 193 ~l~~l~~L~~L~l~~n~l~~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~-l~~~~l~~l~ 270 (353)
T 2z80_A 193 SLKSIQNVSHLILHMKQHILLLEI-FVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVK-ITDESLFQVM 270 (353)
T ss_dssp TTTTCSEEEEEEEECSCSTTHHHH-HHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCB-CCHHHHHHHH
T ss_pred HHhccccCCeecCCCCccccchhh-hhhhcccccEEECCCCccccccccccccccccchhhcccccccc-ccCcchhhhH
Confidence 344455566666665555432221 222456666666665531110 1223344555554432 33333322
Q ss_pred -HHhccCCCcEEecCCCCCCChhhhhhhccCCCceEEEecCC
Q 007252 367 -LGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLC 407 (611)
Q Consensus 367 -~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 407 (611)
....+++|++|++++ +.++......+..+++|++|+++++
T Consensus 271 ~~l~~l~~L~~L~Ls~-N~l~~i~~~~~~~l~~L~~L~L~~N 311 (353)
T 2z80_A 271 KLLNQISGLLELEFSR-NQLKSVPDGIFDRLTSLQKIWLHTN 311 (353)
T ss_dssp HHHHTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred HHHhcccCCCEEECCC-CCCCccCHHHHhcCCCCCEEEeeCC
Confidence 223456666666666 4554332223344555555555554
No 59
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.55 E-value=4.6e-16 Score=148.89 Aligned_cols=247 Identities=16% Similarity=0.080 Sum_probs=149.5
Q ss_pred HHHHHhcCCCccEEEeccccccChHHHHHHHhcCCCCceeccCCCCCccchhHHHHhhcCCCccEEEccCcccChHHHHH
Q 007252 241 LRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQT 320 (611)
Q Consensus 241 ~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~ 320 (611)
+..+...+++|++|+++++.... . .+..+..+++|+.|+++++.. .... .+..+++|+.|+++++.+....
T Consensus 26 ~~~~~~~~~~L~~L~L~~n~l~~-~-~~~~~~~l~~L~~L~Ls~n~l--~~~~--~~~~l~~L~~L~Ls~n~l~~l~--- 96 (317)
T 3o53_A 26 LASLRQSAWNVKELDLSGNPLSQ-I-SAADLAPFTKLELLNLSSNVL--YETL--DLESLSTLRTLDLNNNYVQELL--- 96 (317)
T ss_dssp HHHHHTTGGGCSEEECTTSCCCC-C-CHHHHTTCTTCCEEECTTSCC--EEEE--EETTCTTCCEEECCSSEEEEEE---
T ss_pred HHHHhccCCCCCEEECcCCccCc-C-CHHHhhCCCcCCEEECCCCcC--Ccch--hhhhcCCCCEEECcCCcccccc---
Confidence 44455557899999999964332 2 234567899999999998854 2211 2788999999999999876422
Q ss_pred HHHhCCCCcEEeeccCCCCCC-CCCCCCCcEEecCCCccCChhHHHHHHhccCCCcEEecCCCCCCChhhhhhhccCCCc
Q 007252 321 ISFNCKSLVEIGLSKCLGVTN-TDSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSEL 399 (611)
Q Consensus 321 ~~~~~~~L~~L~l~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L 399 (611)
..++|++|+++++..... ... +++|++|++++ +.++......+..+++|
T Consensus 97 ---~~~~L~~L~l~~n~l~~~~~~~--------------------------~~~L~~L~l~~-N~l~~~~~~~~~~l~~L 146 (317)
T 3o53_A 97 ---VGPSIETLHAANNNISRVSCSR--------------------------GQGKKNIYLAN-NKITMLRDLDEGCRSRV 146 (317)
T ss_dssp ---ECTTCCEEECCSSCCSEEEECC--------------------------CSSCEEEECCS-SCCCSGGGBCTGGGSSE
T ss_pred ---CCCCcCEEECCCCccCCcCccc--------------------------cCCCCEEECCC-CCCCCccchhhhccCCC
Confidence 458899999887631111 122 34566666665 45554444445556666
Q ss_pred eEEEecCCCCCChHhHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhcCccCceecccccCCCChHHHHHhhCCCCCCEE
Q 007252 400 LFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDL 479 (611)
Q Consensus 400 ~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L 479 (611)
+.|+++++ .++......+...+++|++|++++| .++.. ... ..+++|++|+++++ .++..... +..+++|+.|
T Consensus 147 ~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~--~~~-~~l~~L~~L~Ls~N-~l~~l~~~-~~~l~~L~~L 219 (317)
T 3o53_A 147 QYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYN-FIYDV--KGQ-VVFAKLKTLDLSSN-KLAFMGPE-FQSAAGVTWI 219 (317)
T ss_dssp EEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTS-CCCEE--ECC-CCCTTCCEEECCSS-CCCEECGG-GGGGTTCSEE
T ss_pred CEEECCCC-CCCcccHHHHhhccCcCCEEECCCC-cCccc--ccc-cccccCCEEECCCC-cCCcchhh-hcccCcccEE
Confidence 66666665 4444333333334566666666665 33321 000 12567777777773 45543222 5567777888
Q ss_pred ecCCCccccHHHHHHHHhcCCccCEeeccccCCCCHHHHHHHHhhCCCCCEEEeccCC
Q 007252 480 ELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQNLRQINLSYCA 537 (611)
Q Consensus 480 ~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~~~ 537 (611)
+++++ .++.. ......+++|+.|++++| .+...........+++|+.++++++.
T Consensus 220 ~L~~N-~l~~l--~~~~~~l~~L~~L~l~~N-~~~~~~~~~~~~~~~~L~~l~l~~~~ 273 (317)
T 3o53_A 220 SLRNN-KLVLI--EKALRFSQNLEHFDLRGN-GFHCGTLRDFFSKNQRVQTVAKQTVK 273 (317)
T ss_dssp ECTTS-CCCEE--CTTCCCCTTCCEEECTTC-CCBHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred ECcCC-cccch--hhHhhcCCCCCEEEccCC-CccCcCHHHHHhccccceEEECCCch
Confidence 87774 45421 112235678888888888 66544444555556777777776553
No 60
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.54 E-value=5.8e-16 Score=149.50 Aligned_cols=132 Identities=20% Similarity=0.081 Sum_probs=74.9
Q ss_pred CCCcEEecCCCCCCChhhhhhhccCCCceEEEecCCCCCChHhHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhcCccC
Q 007252 372 LRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKKL 451 (611)
Q Consensus 372 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 451 (611)
++|++|++++ +.++......+..+++|+.|+++++ .++......+ ..+++|++|+++++ .++. +......+++|
T Consensus 193 ~~L~~L~l~~-n~i~~~~~~~l~~l~~L~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~L~~N-~l~~--lp~~l~~l~~L 266 (332)
T 2ft3_A 193 ETLNELHLDH-NKIQAIELEDLLRYSKLYRLGLGHN-QIRMIENGSL-SFLPTLRELHLDNN-KLSR--VPAGLPDLKLL 266 (332)
T ss_dssp SSCSCCBCCS-SCCCCCCTTSSTTCTTCSCCBCCSS-CCCCCCTTGG-GGCTTCCEEECCSS-CCCB--CCTTGGGCTTC
T ss_pred CCCCEEECCC-CcCCccCHHHhcCCCCCCEEECCCC-cCCcCChhHh-hCCCCCCEEECCCC-cCee--cChhhhcCccC
Confidence 4677777776 5665555555666777777777766 4443222222 25677777777775 4431 11113456778
Q ss_pred ceecccccCCCChHHHHHhhC------CCCCCEEecCCCccccHHHHHHHHhcCCccCEeecccc
Q 007252 452 KKLNLSYCVNVTDRGMEHIRF------IEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHC 510 (611)
Q Consensus 452 ~~L~l~~c~~l~~~~~~~l~~------~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c 510 (611)
+.|++++ +.++..+...+.. .+.|+.|++.+++.............+++|+.+++++|
T Consensus 267 ~~L~l~~-N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 267 QVVYLHT-NNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp CEEECCS-SCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred CEEECCC-CCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence 8888877 4566554444432 46788888888542211111223345788888888877
No 61
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.51 E-value=2.3e-13 Score=132.03 Aligned_cols=183 Identities=20% Similarity=0.249 Sum_probs=137.8
Q ss_pred cCCCcEEecCCCCCCChhhhhhhcc-----CCCceEEEecCCCCCChHhHHHHHhcCCCCcEEeccCCCCCCHHHHHHHH
Q 007252 371 CLRLEEIDLTDCNGVNDKGLEYLSR-----CSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALS 445 (611)
Q Consensus 371 ~~~L~~L~l~~~~~~~~~~~~~l~~-----~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~ 445 (611)
.++|++|++++ +.+++.....+.. .++|++|++++| .+++.++..+...+++|++|++++| .+++.+...+.
T Consensus 71 ~~~L~~L~Ls~-n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~ 147 (372)
T 3un9_A 71 LSSLRQLNLAG-VRMTPVKCTVVAAVLGSGRHALDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLR 147 (372)
T ss_dssp HTTCCEEECTT-SCCCHHHHHHHHHHHSSCSSCEEEEECTTC-CCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHH
T ss_pred HhhCCEEEecC-CCCCHHHHHHHHHHHhhCCCCceEEEecCC-CCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHH
Confidence 46888999988 5777766655442 368999999987 7888888887777788999999987 78888777765
Q ss_pred h----cCccCceecccccCCCChHHHHHh----hCCCCCCEEecCCCccccHHHHHHHH---hcCCccCEeeccccCCCC
Q 007252 446 N----GCKKLKKLNLSYCVNVTDRGMEHI----RFIEDLSDLELRGLTKITSAGLTALA---AGCKRLADLDLKHCAKID 514 (611)
Q Consensus 446 ~----~~~~L~~L~l~~c~~l~~~~~~~l----~~~~~L~~L~l~~c~~l~~~~~~~~~---~~~~~L~~L~l~~c~~l~ 514 (611)
. ..++|++|+|++| .+++.+...+ ..+++|++|++++| .+++.+...+. ..+++|+.|++++| .++
T Consensus 148 ~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~ 224 (372)
T 3un9_A 148 DLLLHDQCQITTLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQELNVAYN-GAG 224 (372)
T ss_dssp HHHHSTTCCCCEEECCSS-CCHHHHHHHHHHHHHTCSSCCEEECTTS-SCHHHHHHHHHHHGGGCSCCCEEECCSS-CCC
T ss_pred HHHHhcCCccceeeCCCC-CCChHHHHHHHHHHhcCCCcCEEeCCCC-CCCcHHHHHHHHHHhcCCCcCeEECCCC-CCC
Confidence 3 3578999999996 6877766554 56889999999984 68877765544 35678999999999 898
Q ss_pred HHHHHHHHhh---CCCCCEEEeccCCCChhHHHHHhcccccccc--ceeec
Q 007252 515 DSGFWALAYY---SQNLRQINLSYCALSDMALCMVMGNMTRLQD--AKLVH 560 (611)
Q Consensus 515 ~~~~~~~~~~---~~~L~~L~l~~~~l~~~~~~~~l~~~~~L~~--l~l~~ 560 (611)
+.+...++.. .++|++|++++|++++.+. ..+........ +.+..
T Consensus 225 ~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~-~~L~~~~~~~~~~L~~l~ 274 (372)
T 3un9_A 225 DTAALALARAAREHPSLELLHLYFNELSSEGR-QVLRDLGGAAEGGARVVV 274 (372)
T ss_dssp HHHHHHHHHHHHHCSSCCEEECTTSSCCHHHH-HHHHHCC------CEEEC
T ss_pred HHHHHHHHHHHHhCCCCCEEeccCCCCCHHHH-HHHHHHhcCCCccchhhH
Confidence 8877666543 5899999999999999888 77766544432 44443
No 62
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.50 E-value=2.3e-15 Score=143.59 Aligned_cols=203 Identities=18% Similarity=0.160 Sum_probs=133.9
Q ss_pred hCCCCcEEeeccCCCCCC----C--CCCCCCcEEecCCCccCChh--HHHHHHh-ccCCCcEEecCCCCCCChhhhhhhc
Q 007252 324 NCKSLVEIGLSKCLGVTN----T--DSCRGLVCLKIESCNMITEK--GLYQLGS-FCLRLEEIDLTDCNGVNDKGLEYLS 394 (611)
Q Consensus 324 ~~~~L~~L~l~~~~~~~~----~--~~~~~L~~L~l~~~~~~~~~--~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~l~ 394 (611)
.+++|++|+++++..... + ..+++|++|+++++. ++.. .+..+.. ..++|++|++++ +.++......+.
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~-N~l~~~~~~~~~ 170 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQ-AHSLNFSCEQVR 170 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEES-CSCCCCCTTTCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeC-CCCccchHHHhc
Confidence 467777777777642211 2 667888888888754 3332 2222211 128999999999 678777767788
Q ss_pred cCCCceEEEecCCCCCCh-HhHH-HH-HhcCCCCcEEeccCCCCCCH--HHHHHHHhcCccCceecccccCCCChHH-HH
Q 007252 395 RCSELLFLKLGLCENISD-KGLF-YI-ASNCLRIQGLDLYKCSGIGD--DGLAALSNGCKKLKKLNLSYCVNVTDRG-ME 468 (611)
Q Consensus 395 ~~~~L~~L~l~~~~~~~~-~~~~-~l-~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~~~L~~L~l~~c~~l~~~~-~~ 468 (611)
.+++|++|+++++ .+.. .+.. .+ ...+++|++|++++| .++. .....+...+++|++|+++++ .++... ..
T Consensus 171 ~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~ 247 (312)
T 1wwl_A 171 VFPALSTLDLSDN-PELGERGLISALCPLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHN-SLRDAAGAP 247 (312)
T ss_dssp CCSSCCEEECCSC-TTCHHHHHHHHSCTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTS-CCCSSCCCS
T ss_pred cCCCCCEEECCCC-CcCcchHHHHHHHhccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCC-cCCcccchh
Confidence 8999999999987 4433 2222 22 147799999999987 5652 223345567889999999984 565533 23
Q ss_pred HhhCCCCCCEEecCCCccccHHHHHHHHhc-CCccCEeeccccCCCCHHHHHHHHhhCCCCCEEEeccCCCChh
Q 007252 469 HIRFIEDLSDLELRGLTKITSAGLTALAAG-CKRLADLDLKHCAKIDDSGFWALAYYSQNLRQINLSYCALSDM 541 (611)
Q Consensus 469 ~l~~~~~L~~L~l~~c~~l~~~~~~~~~~~-~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~ 541 (611)
.+..+++|+.|+++++ .++.. ... .++|+.|++++| .++.. .. ...+++|++|++++|++++.
T Consensus 248 ~~~~l~~L~~L~Ls~N-~l~~i-----p~~~~~~L~~L~Ls~N-~l~~~--p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 248 SCDWPSQLNSLNLSFT-GLKQV-----PKGLPAKLSVLDLSYN-RLDRN--PS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp CCCCCTTCCEEECTTS-CCSSC-----CSSCCSEEEEEECCSS-CCCSC--CC-TTTSCEEEEEECTTCTTTCC
T ss_pred hhhhcCCCCEEECCCC-ccChh-----hhhccCCceEEECCCC-CCCCC--hh-HhhCCCCCEEeccCCCCCCC
Confidence 3445788999999884 55421 111 268888888888 66654 12 34468888888888887653
No 63
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.50 E-value=2.7e-15 Score=150.84 Aligned_cols=223 Identities=17% Similarity=0.089 Sum_probs=121.5
Q ss_pred CCccEEEccCcccChHHHHHHHHhCCCCcEEeeccCCCCCC----CCCCCCCcEEecCCCccCChhHHHHHHhccCCCcE
Q 007252 301 KNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTN----TDSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEE 376 (611)
Q Consensus 301 ~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 376 (611)
++++.|+++++.+.......+ ..+++|++|+++++..... +..+++|++|+++++. ++...... ...+++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~-~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~-~~~l~~L~~ 140 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSF-KHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR-LTTIPNGA-FVYLSKLKE 140 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTT-SSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC-CSSCCTTT-SCSCSSCCE
T ss_pred CCCcEEEccCCcCCeeCHHHh-hCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc-CCeeCHhH-hhccccCce
Confidence 478888888887654332222 2567777887777632111 5566777777777643 32211111 224567777
Q ss_pred EecCCCCCCChhhhhhhccCCCceEEEecCCCCCChHhHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhcCccCceecc
Q 007252 377 IDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKKLKKLNL 456 (611)
Q Consensus 377 L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 456 (611)
|++++ +.++......+..+++|++|+++++..+.......+. .+++|++|++++| .++.. .. ...+++|++|++
T Consensus 141 L~L~~-N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~-~l~~L~~L~L~~n-~l~~~--~~-~~~l~~L~~L~L 214 (440)
T 3zyj_A 141 LWLRN-NPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFE-GLSNLRYLNLAMC-NLREI--PN-LTPLIKLDELDL 214 (440)
T ss_dssp EECCS-CCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTT-TCSSCCEEECTTS-CCSSC--CC-CTTCSSCCEEEC
T ss_pred eeCCC-CcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhh-cccccCeecCCCC-cCccc--cc-cCCCcccCEEEC
Confidence 77776 5565554455666677777777665444432222222 4667777777665 33311 11 234566777777
Q ss_pred cccCCCChHHHHHhhCCCCCCEEecCCCccccHHHHHHHHhcCCccCEeeccccCCCCHHHHHHHHhhCCCCCEEEeccC
Q 007252 457 SYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQNLRQINLSYC 536 (611)
Q Consensus 457 ~~c~~l~~~~~~~l~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~~ 536 (611)
+++ .++......+..+++|+.|+++++ .++..... ....+++|+.|++++| .++..... ....+++|+.|++++|
T Consensus 215 s~N-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~L~~N 289 (440)
T 3zyj_A 215 SGN-HLSAIRPGSFQGLMHLQKLWMIQS-QIQVIERN-AFDNLQSLVEINLAHN-NLTLLPHD-LFTPLHHLERIHLHHN 289 (440)
T ss_dssp TTS-CCCEECTTTTTTCTTCCEEECTTC-CCCEECTT-SSTTCTTCCEEECTTS-CCCCCCTT-TTSSCTTCCEEECCSS
T ss_pred CCC-ccCccChhhhccCccCCEEECCCC-ceeEEChh-hhcCCCCCCEEECCCC-CCCccChh-HhccccCCCEEEcCCC
Confidence 663 455544455566667777777663 34332111 1224566666666666 55432211 1123466666666666
Q ss_pred C
Q 007252 537 A 537 (611)
Q Consensus 537 ~ 537 (611)
+
T Consensus 290 p 290 (440)
T 3zyj_A 290 P 290 (440)
T ss_dssp C
T ss_pred C
Confidence 6
No 64
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.50 E-value=5.2e-15 Score=139.43 Aligned_cols=182 Identities=20% Similarity=0.169 Sum_probs=85.3
Q ss_pred ccCCCcEEecCCCCCCChhhhhhhccCCCceEEEecCCCCCChHhHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhcCc
Q 007252 370 FCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCK 449 (611)
Q Consensus 370 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 449 (611)
.+++|++|++++ +.++......+..+++|++|+++++..++......+. .+++|++|+++++ .++.... .....++
T Consensus 54 ~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~-~l~~L~~L~l~~n-~l~~~~~-~~~~~l~ 129 (285)
T 1ozn_A 54 ACRNLTILWLHS-NVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFH-GLGRLHTLHLDRC-GLQELGP-GLFRGLA 129 (285)
T ss_dssp TCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTT-TCTTCCEEECTTS-CCCCCCT-TTTTTCT
T ss_pred cCCCCCEEECCC-CccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhc-CCcCCCEEECCCC-cCCEECH-hHhhCCc
Confidence 345555555555 3444443444455555555555554323322111111 3455555555554 2221110 1123345
Q ss_pred cCceecccccCCCChHHHHHhhCCCCCCEEecCCCccccHHHHHHHHhcCCccCEeeccccCCCCHHHHHHHHhhCCCCC
Q 007252 450 KLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQNLR 529 (611)
Q Consensus 450 ~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~ 529 (611)
+|++|+++++ .++......+..+++|+.|+++++ .++..... ....+++|+.|++++| .++......+ ..+++|+
T Consensus 130 ~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~ 204 (285)
T 1ozn_A 130 ALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHGN-RISSVPER-AFRGLHSLDRLLLHQN-RVAHVHPHAF-RDLGRLM 204 (285)
T ss_dssp TCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCEECTT-TTTTCTTCCEEECCSS-CCCEECTTTT-TTCTTCC
T ss_pred CCCEEECCCC-cccccCHhHhccCCCccEEECCCC-cccccCHH-HhcCccccCEEECCCC-cccccCHhHc-cCccccc
Confidence 5666666552 344333333455566666666653 33321111 1223556666666666 4443222222 2235666
Q ss_pred EEEeccCCCChhHHHHHhccccccccceeecc
Q 007252 530 QINLSYCALSDMALCMVMGNMTRLQDAKLVHL 561 (611)
Q Consensus 530 ~L~l~~~~l~~~~~~~~l~~~~~L~~l~l~~~ 561 (611)
.|++++|.+++... ..+..+++|+.|++.++
T Consensus 205 ~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~N 235 (285)
T 1ozn_A 205 TLYLFANNLSALPT-EALAPLRALQYLRLNDN 235 (285)
T ss_dssp EEECCSSCCSCCCH-HHHTTCTTCCEEECCSS
T ss_pred EeeCCCCcCCcCCH-HHcccCcccCEEeccCC
Confidence 66666666555554 45556666666666554
No 65
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.49 E-value=2.6e-16 Score=150.09 Aligned_cols=108 Identities=25% Similarity=0.272 Sum_probs=46.1
Q ss_pred cCcEEeccCcccCh--HHHHHhhhcCCCcEEEecCCCCCChhHHHHHHhcCCCccEEEeccccccChHHHHHHHhcCCCC
Q 007252 200 DLKSLDVSYLKLTN--DSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGL 277 (611)
Q Consensus 200 ~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L 277 (611)
+++.|+++++.+.. .....+..+++|++|+++++..+.......+.. +++|++|+++++.... .++..+..+++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~-l~~L~~L~Ls~n~l~~--~~p~~~~~l~~L 127 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK-LTQLHYLYITHTNVSG--AIPDFLSQIKTL 127 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGG-CTTCSEEEEEEECCEE--ECCGGGGGCTTC
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhc-CCCCCEEECcCCeeCC--cCCHHHhCCCCC
Confidence 45555555554443 333445556666666665312222211222222 5566666665532210 011122334445
Q ss_pred ceeccCCCCCccchhHHHHhhcCCCccEEEccCcc
Q 007252 278 LQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGAR 312 (611)
Q Consensus 278 ~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 312 (611)
++|+++++. +.......+..+++|++|+++++.
T Consensus 128 ~~L~Ls~N~--l~~~~p~~~~~l~~L~~L~L~~N~ 160 (313)
T 1ogq_A 128 VTLDFSYNA--LSGTLPPSISSLPNLVGITFDGNR 160 (313)
T ss_dssp CEEECCSSE--EESCCCGGGGGCTTCCEEECCSSC
T ss_pred CEEeCCCCc--cCCcCChHHhcCCCCCeEECcCCc
Confidence 555544442 122222334444445555544443
No 66
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.49 E-value=3.6e-15 Score=150.49 Aligned_cols=223 Identities=16% Similarity=0.081 Sum_probs=127.9
Q ss_pred CCccEEEccCcccChHHHHHHHHhCCCCcEEeeccCCCCCC----CCCCCCCcEEecCCCccCChhHHHHHHhccCCCcE
Q 007252 301 KNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTN----TDSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEE 376 (611)
Q Consensus 301 ~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 376 (611)
++++.|+++++.+.......+ ..+++|++|+++++..... +..+++|++|+++++. +...... ....+++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~-~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-~~~~l~~L~~ 151 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTF-RHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW-LTVIPSG-AFEYLSKLRE 151 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTT-TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSBCCTT-TSSSCTTCCE
T ss_pred CCccEEECcCCcCceECHHHc-CCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc-CCccChh-hhcccCCCCE
Confidence 478999998887664322222 2677888888887632111 5667777777777653 3222111 1225677777
Q ss_pred EecCCCCCCChhhhhhhccCCCceEEEecCCCCCChHhHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhcCccCceecc
Q 007252 377 IDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKKLKKLNL 456 (611)
Q Consensus 377 L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 456 (611)
|++++ +.++......+..+++|+.|+++++..+.......+. .+++|++|++++| .++.. .. ...+++|++|++
T Consensus 152 L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~-~l~~L~~L~L~~n-~l~~~--~~-~~~l~~L~~L~L 225 (452)
T 3zyi_A 152 LWLRN-NPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFE-GLFNLKYLNLGMC-NIKDM--PN-LTPLVGLEELEM 225 (452)
T ss_dssp EECCS-CCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTT-TCTTCCEEECTTS-CCSSC--CC-CTTCTTCCEEEC
T ss_pred EECCC-CCcceeCHhHHhcCCcccEEeCCCCCCccccChhhcc-CCCCCCEEECCCC-ccccc--cc-ccccccccEEEC
Confidence 77777 5666555555667777777777766555433222222 5677777777765 33321 11 234567777777
Q ss_pred cccCCCChHHHHHhhCCCCCCEEecCCCccccHHHHHHHHhcCCccCEeeccccCCCCHHHHHHHHhhCCCCCEEEeccC
Q 007252 457 SYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQNLRQINLSYC 536 (611)
Q Consensus 457 ~~c~~l~~~~~~~l~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~~ 536 (611)
++ +.++......+..+++|+.|+++++ .++..... ....+++|+.|++++| .++..... ....+++|+.|++++|
T Consensus 226 s~-N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~L~~N 300 (452)
T 3zyi_A 226 SG-NHFPEIRPGSFHGLSSLKKLWVMNS-QVSLIERN-AFDGLASLVELNLAHN-NLSSLPHD-LFTPLRYLVELHLHHN 300 (452)
T ss_dssp TT-SCCSEECGGGGTTCTTCCEEECTTS-CCCEECTT-TTTTCTTCCEEECCSS-CCSCCCTT-SSTTCTTCCEEECCSS
T ss_pred cC-CcCcccCcccccCccCCCEEEeCCC-cCceECHH-HhcCCCCCCEEECCCC-cCCccChH-HhccccCCCEEEccCC
Confidence 76 3555555555666777777777763 34332111 1234667777777777 55432211 1223466777777776
Q ss_pred C
Q 007252 537 A 537 (611)
Q Consensus 537 ~ 537 (611)
+
T Consensus 301 p 301 (452)
T 3zyi_A 301 P 301 (452)
T ss_dssp C
T ss_pred C
Confidence 6
No 67
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.49 E-value=4.7e-15 Score=139.77 Aligned_cols=37 Identities=22% Similarity=0.211 Sum_probs=17.8
Q ss_pred ccCCCcEEecCCCCCCChhhhhhhccCCCceEEEecCC
Q 007252 370 FCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLC 407 (611)
Q Consensus 370 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 407 (611)
.+++|++|++++ +.++......+..+++|++|+++++
T Consensus 103 ~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n 139 (285)
T 1ozn_A 103 GLGRLHTLHLDR-CGLQELGPGLFRGLAALQYLYLQDN 139 (285)
T ss_dssp TCTTCCEEECTT-SCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCcCCCEEECCC-CcCCEECHhHhhCCcCCCEEECCCC
Confidence 344555555555 3444333334444555555555544
No 68
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.48 E-value=2.4e-16 Score=150.33 Aligned_cols=179 Identities=13% Similarity=0.037 Sum_probs=102.7
Q ss_pred ccCCCcEEecCCCCCCChhhhhhhccCCCceEEEecCCCCCChHhHHHHHhcCC-CCcEEeccCCCCCCHHHHHHHHhcC
Q 007252 370 FCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCL-RIQGLDLYKCSGIGDDGLAALSNGC 448 (611)
Q Consensus 370 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~ 448 (611)
.+++|++|++++ +.++......+..+++|++|+++++ .++......+. .++ +|++|+++++ .++......+ ..+
T Consensus 123 ~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~p~~l~-~l~~~L~~L~L~~N-~l~~~~~~~~-~~l 197 (313)
T 1ogq_A 123 QIKTLVTLDFSY-NALSGTLPPSISSLPNLVGITFDGN-RISGAIPDSYG-SFSKLFTSMTISRN-RLTGKIPPTF-ANL 197 (313)
T ss_dssp GCTTCCEEECCS-SEEESCCCGGGGGCTTCCEEECCSS-CCEEECCGGGG-CCCTTCCEEECCSS-EEEEECCGGG-GGC
T ss_pred CCCCCCEEeCCC-CccCCcCChHHhcCCCCCeEECcCC-cccCcCCHHHh-hhhhcCcEEECcCC-eeeccCChHH-hCC
Confidence 566777777777 5555444455666777777777776 44322222222 344 7777777765 2321111111 223
Q ss_pred ccCceecccccCCCChHHHHHhhCCCCCCEEecCCCccccHHHHHHHHhcCCccCEeeccccCCCCHHHHHHHHhhCCCC
Q 007252 449 KKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQNL 528 (611)
Q Consensus 449 ~~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L 528 (611)
+ |+.|+++++ .++......+..+++|+.|+++++ .++.... . ...+++|++|++++| .++..... ....+++|
T Consensus 198 ~-L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~-~-~~~l~~L~~L~Ls~N-~l~~~~p~-~l~~l~~L 270 (313)
T 1ogq_A 198 N-LAFVDLSRN-MLEGDASVLFGSDKNTQKIHLAKN-SLAFDLG-K-VGLSKNLNGLDLRNN-RIYGTLPQ-GLTQLKFL 270 (313)
T ss_dssp C-CSEEECCSS-EEEECCGGGCCTTSCCSEEECCSS-EECCBGG-G-CCCCTTCCEEECCSS-CCEECCCG-GGGGCTTC
T ss_pred c-ccEEECcCC-cccCcCCHHHhcCCCCCEEECCCC-ceeeecC-c-ccccCCCCEEECcCC-cccCcCCh-HHhcCcCC
Confidence 3 778888773 455444455667788888888874 3432111 1 234678888888888 55422111 22345788
Q ss_pred CEEEeccCCCChhHHHHHhccccccccceeeccc
Q 007252 529 RQINLSYCALSDMALCMVMGNMTRLQDAKLVHLT 562 (611)
Q Consensus 529 ~~L~l~~~~l~~~~~~~~l~~~~~L~~l~l~~~~ 562 (611)
++|++++|.++.... ....+++|+.+++.+.+
T Consensus 271 ~~L~Ls~N~l~~~ip--~~~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 271 HSLNVSFNNLCGEIP--QGGNLQRFDVSAYANNK 302 (313)
T ss_dssp CEEECCSSEEEEECC--CSTTGGGSCGGGTCSSS
T ss_pred CEEECcCCcccccCC--CCccccccChHHhcCCC
Confidence 888888887664332 12556777777766654
No 69
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.47 E-value=4.5e-14 Score=134.61 Aligned_cols=228 Identities=15% Similarity=0.097 Sum_probs=153.1
Q ss_pred CCCccEEEccCcccChHHHHHHHH--hCCCCcEEeeccCCCCCC----C--CCCCCCcEEecCCCccCChh----HHHHH
Q 007252 300 LKNLEAITMDGARISDSCFQTISF--NCKSLVEIGLSKCLGVTN----T--DSCRGLVCLKIESCNMITEK----GLYQL 367 (611)
Q Consensus 300 ~~~L~~L~l~~~~~~~~~l~~~~~--~~~~L~~L~l~~~~~~~~----~--~~~~~L~~L~l~~~~~~~~~----~~~~~ 367 (611)
...++.+.+.++.+.+..+..+.. ..++|++|+++++..... + ..+++|++|+++++. +... ....+
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~~~~~~~~~~~ 141 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVS-WATGRSWLAELQQ 141 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCC-CSSTTSSHHHHHT
T ss_pred hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeeccc-ccchhhhhHHHHh
Confidence 345788888888877766554432 346799999998853322 3 778899999999865 3321 11222
Q ss_pred HhccCCCcEEecCCCCCCChhhhhhhccCCCceEEEecCCCCCChHhHHHH--HhcCCCCcEEeccCCCCCCH--HHHHH
Q 007252 368 GSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYI--ASNCLRIQGLDLYKCSGIGD--DGLAA 443 (611)
Q Consensus 368 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l--~~~~~~L~~L~l~~~~~~~~--~~~~~ 443 (611)
. .+++|++|++++ +.+.......+..+++|++|+++++......++... ...+++|++|++++| .++. .....
T Consensus 142 ~-~~~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~ 218 (310)
T 4glp_A 142 W-LKPGLKVLSIAQ-AHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTGVCAA 218 (310)
T ss_dssp T-BCSCCCEEEEEC-CSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHHHHHH
T ss_pred h-hccCCCEEEeeC-CCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHHHHHH
Confidence 3 688999999999 677776667788899999999999833332222211 236789999999997 5552 22223
Q ss_pred HHhcCccCceecccccCCCChHHHHHhhC---CCCCCEEecCCCccccHHHHHHHHhcCCccCEeeccccCCCCHHHHHH
Q 007252 444 LSNGCKKLKKLNLSYCVNVTDRGMEHIRF---IEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWA 520 (611)
Q Consensus 444 ~~~~~~~L~~L~l~~c~~l~~~~~~~l~~---~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~ 520 (611)
+...+++|++|+++++ .++......+.. +++|++|+++++ .++.. .. .-+++|+.|++++| .++....
T Consensus 219 l~~~l~~L~~L~Ls~N-~l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~~l--p~--~~~~~L~~L~Ls~N-~l~~~~~-- 289 (310)
T 4glp_A 219 LAAAGVQPHSLDLSHN-SLRATVNPSAPRCMWSSALNSLNLSFA-GLEQV--PK--GLPAKLRVLDLSSN-RLNRAPQ-- 289 (310)
T ss_dssp HHHHTCCCSSEECTTS-CCCCCCCSCCSSCCCCTTCCCEECCSS-CCCSC--CS--CCCSCCSCEECCSC-CCCSCCC--
T ss_pred HHhcCCCCCEEECCCC-CCCccchhhHHhccCcCcCCEEECCCC-CCCch--hh--hhcCCCCEEECCCC-cCCCCch--
Confidence 4466899999999984 566543333343 378999999884 56521 11 11368889999888 6664311
Q ss_pred HHhhCCCCCEEEeccCCCChh
Q 007252 521 LAYYSQNLRQINLSYCALSDM 541 (611)
Q Consensus 521 ~~~~~~~L~~L~l~~~~l~~~ 541 (611)
...+++|+.|++++|++++.
T Consensus 290 -~~~l~~L~~L~L~~N~l~~~ 309 (310)
T 4glp_A 290 -PDELPEVDNLTLDGNPFLVP 309 (310)
T ss_dssp -TTSCCCCSCEECSSTTTSCC
T ss_pred -hhhCCCccEEECcCCCCCCC
Confidence 34568888999988887764
No 70
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.47 E-value=1.3e-15 Score=145.24 Aligned_cols=114 Identities=17% Similarity=0.144 Sum_probs=61.4
Q ss_pred cCCCCcEEeccCCCCCCHHHHHHHHhcCccCceecccccCCCChHHHHHhhCCCCCCEEecCCCccccHHHHHHHHhcCC
Q 007252 421 NCLRIQGLDLYKCSGIGDDGLAALSNGCKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCK 500 (611)
Q Consensus 421 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~ 500 (611)
.+++|++|+++++ .++...+......+++|++|+++++ .++......+..+++|+.|+++++ .++...... ...++
T Consensus 148 ~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~-~~~l~ 223 (306)
T 2z66_A 148 GLSSLEVLKMAGN-SFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFP-YKCLN 223 (306)
T ss_dssp TCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTS-CCSBCCSGG-GTTCT
T ss_pred cCcCCCEEECCCC-ccccccchhHHhhCcCCCEEECCCC-CcCCcCHHHhcCCCCCCEEECCCC-ccCccChhh-ccCcc
Confidence 3455555555554 2221111112234566777777663 455544455566777777777774 343221111 23467
Q ss_pred ccCEeeccccCCCCHHHHHHHHhhCCCCCEEEeccCCCC
Q 007252 501 RLADLDLKHCAKIDDSGFWALAYYSQNLRQINLSYCALS 539 (611)
Q Consensus 501 ~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~~~l~ 539 (611)
+|+.|++++| .++......+....++|++|++++|+++
T Consensus 224 ~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 224 SLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp TCCEEECTTS-CCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred cCCEeECCCC-CCcccCHHHHHhhhccCCEEEccCCCee
Confidence 7888888887 5554322222222247888888888854
No 71
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.46 E-value=3.6e-15 Score=142.21 Aligned_cols=61 Identities=13% Similarity=0.040 Sum_probs=29.1
Q ss_pred ccCCCcEEecCCCCCCChhhhhhhccCCCceEEEecCCCCCChHhHHHHHhcC-CCCcEEeccCC
Q 007252 370 FCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNC-LRIQGLDLYKC 433 (611)
Q Consensus 370 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~-~~L~~L~l~~~ 433 (611)
.+++|++|++++ +.++......+..+++|+.|+++++ .++......+. .+ ++|++|+++++
T Consensus 197 ~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~-~~~~~L~~L~L~~N 258 (306)
T 2z66_A 197 SLSSLQVLNMSH-NNFFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQELQ-HFPSSLAFLNLTQN 258 (306)
T ss_dssp TCTTCCEEECTT-SCCSBCCSGGGTTCTTCCEEECTTS-CCCBCSSSSCC-CCCTTCCEEECTTC
T ss_pred CCCCCCEEECCC-CccCccChhhccCcccCCEeECCCC-CCcccCHHHHH-hhhccCCEEEccCC
Confidence 345566666655 4444443334445556666666555 33332222222 22 35555665554
No 72
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.44 E-value=2e-13 Score=114.21 Aligned_cols=104 Identities=22% Similarity=0.293 Sum_probs=65.8
Q ss_pred CceEEEecCCCCCChHhHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhc---CccCceecccccCCCChHHHHHhhCCC
Q 007252 398 ELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNG---CKKLKKLNLSYCVNVTDRGMEHIRFIE 474 (611)
Q Consensus 398 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~---~~~L~~L~l~~c~~l~~~~~~~l~~~~ 474 (611)
.|++|++++| .+++.++..+. .+++|++|++++|..++|.++..+.+. +++|++|+|++|.++++.++..+.+++
T Consensus 62 ~L~~LDLs~~-~Itd~GL~~L~-~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 62 KIQAIDATDS-CIMSIGFDHME-GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CEEEEEEESC-CCCGGGGGGGT-TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred eEeEEeCcCC-CccHHHHHHhc-CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 4666666666 36666666553 566677777777666777666666652 456777777777667777776666667
Q ss_pred CCCEEecCCCccccHHH--HHHHHhcCCccC
Q 007252 475 DLSDLELRGLTKITSAG--LTALAAGCKRLA 503 (611)
Q Consensus 475 ~L~~L~l~~c~~l~~~~--~~~~~~~~~~L~ 503 (611)
+|++|++++|+.+++.+ ...+...+|+++
T Consensus 140 ~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~ 170 (176)
T 3e4g_A 140 NLKYLFLSDLPGVKEKEKIVQAFKTSLPSLE 170 (176)
T ss_dssp TCCEEEEESCTTCCCHHHHHHHHHHHCTTCE
T ss_pred CCCEEECCCCCCCCchHHHHHHHHHHCCCcE
Confidence 77777777776666644 233334455544
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.44 E-value=1.9e-14 Score=145.73 Aligned_cols=60 Identities=18% Similarity=0.106 Sum_probs=27.4
Q ss_pred CCCcEEecCCCCCCChhhhhhhccCCCceEEEecCCCCCChHhHHHHHhcCCCCcEEeccCC
Q 007252 372 LRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKC 433 (611)
Q Consensus 372 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 433 (611)
++|+.|++++ +.++......+..+++|+.|+++++ .++......+...+++|+.|++++|
T Consensus 120 ~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~~l~~L~~L~Ls~N 179 (487)
T 3oja_A 120 QGKKNIYLAN-NKITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYN 179 (487)
T ss_dssp SSCEEEECCS-SCCCSGGGBCGGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred CCCCEEECCC-CCCCCCCchhhcCCCCCCEEECCCC-CCCCcChHHHhhhCCcccEEecCCC
Confidence 4555555555 3444433334444555555555554 3333322233223455555555543
No 74
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.43 E-value=4.7e-14 Score=142.27 Aligned_cols=223 Identities=14% Similarity=0.066 Sum_probs=118.1
Q ss_pred CCccEEeccCCCCCChhhhHHhhcCCCCcEEeccCCCCCChHHHHHHHhcCCccceeecccccccChHHHHHHHHcCCcC
Q 007252 122 PLLESVDLSYCCGFGDREAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDL 201 (611)
Q Consensus 122 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 201 (611)
+++++|+++++ .+.......+..+++|++|+++++ .++......+. .+++|++|+++++ .++.... .....+++|
T Consensus 75 ~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~-~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L 149 (452)
T 3zyi_A 75 SNTRYLNLMEN-NIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFN-GLASLNTLELFDN-WLTVIPS-GAFEYLSKL 149 (452)
T ss_dssp TTCSEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTT-TCTTCCEEECCSS-CCSBCCT-TTSSSCTTC
T ss_pred CCccEEECcCC-cCceECHHHcCCCCCCCEEECCCC-ccCCcChhhcc-CcccCCEEECCCC-cCCccCh-hhhcccCCC
Confidence 45566666544 344444445555666666666653 33332211222 2566666666665 3332111 112346677
Q ss_pred cEEeccCcccChHHHHHhhhcCCCcEEEecCCCCCChhHHHHHHhcCCCccEEEeccccccChHHHHHHHhcCCCCceec
Q 007252 202 KSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLD 281 (611)
Q Consensus 202 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~ 281 (611)
++|++++|.+.......+..+++|++|++.++..+.......+. .+++|+.|+++++...... .+..+++|+.|+
T Consensus 150 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~-~l~~L~~L~L~~n~l~~~~----~~~~l~~L~~L~ 224 (452)
T 3zyi_A 150 RELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFE-GLFNLKYLNLGMCNIKDMP----NLTPLVGLEELE 224 (452)
T ss_dssp CEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTT-TCTTCCEEECTTSCCSSCC----CCTTCTTCCEEE
T ss_pred CEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhcc-CCCCCCEEECCCCcccccc----cccccccccEEE
Confidence 77777777665544445666777777777765544433322232 3677777777765432221 134556777777
Q ss_pred cCCCCCccchhHHHHhhcCCCccEEEccCcccChHHHHHHHHhCCCCcEEeeccCCCCCC----CCCCCCCcEEecCCCc
Q 007252 282 AGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTN----TDSCRGLVCLKIESCN 357 (611)
Q Consensus 282 l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~L~~L~l~~~~ 357 (611)
++++. +.......+..+++|+.|+++++.+.......+ ..+++|++|+++++..... +..+++|+.|++++++
T Consensus 225 Ls~N~--l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 225 MSGNH--FPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAF-DGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp CTTSC--CSEECGGGGTTCTTCCEEECTTSCCCEECTTTT-TTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred CcCCc--CcccCcccccCccCCCEEEeCCCcCceECHHHh-cCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence 77663 333334556667777777777776543222211 2456666666666521111 3444555555555443
No 75
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.43 E-value=4.1e-14 Score=142.20 Aligned_cols=222 Identities=15% Similarity=0.074 Sum_probs=104.0
Q ss_pred CccEEeccCCCCCChhhhHHhhcCCCCcEEeccCCCCCChHHHHHHHhcCCccceeecccccccChHHHHHHHHcCCcCc
Q 007252 123 LLESVDLSYCCGFGDREAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDLK 202 (611)
Q Consensus 123 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~ 202 (611)
+++.|+++++ .+.......+..+++|++|++.++ .+.......+ ..+++|++|+++++ .++.... .....+++|+
T Consensus 65 ~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~-~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~ 139 (440)
T 3zyj_A 65 NTRLLNLHEN-QIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAF-NGLANLNTLELFDN-RLTTIPN-GAFVYLSKLK 139 (440)
T ss_dssp TCSEEECCSC-CCCEECTTTTSSCSSCCEEECCSS-CCCEECGGGG-TTCSSCCEEECCSS-CCSSCCT-TTSCSCSSCC
T ss_pred CCcEEEccCC-cCCeeCHHHhhCCCCCCEEECCCC-cCCccChhhc-cCCccCCEEECCCC-cCCeeCH-hHhhccccCc
Confidence 3444444432 233333334444455555555542 2222111111 12455555555544 2221110 1122456666
Q ss_pred EEeccCcccChHHHHHhhhcCCCcEEEecCCCCCChhHHHHHHhcCCCccEEEeccccccChHHHHHHHhcCCCCceecc
Q 007252 203 SLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDA 282 (611)
Q Consensus 203 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l 282 (611)
+|++++|.+.......+..+++|++|++.++..+.......+. ++++|++|+++++...... . +..+++|+.|++
T Consensus 140 ~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~-~l~~L~~L~L~~n~l~~~~---~-~~~l~~L~~L~L 214 (440)
T 3zyj_A 140 ELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFE-GLSNLRYLNLAMCNLREIP---N-LTPLIKLDELDL 214 (440)
T ss_dssp EEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTT-TCSSCCEEECTTSCCSSCC---C-CTTCSSCCEEEC
T ss_pred eeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhh-cccccCeecCCCCcCcccc---c-cCCCcccCEEEC
Confidence 6666666555444444556667777777665444332222222 2666677766664322211 1 334566777776
Q ss_pred CCCCCccchhHHHHhhcCCCccEEEccCcccChHHHHHHHHhCCCCcEEeeccCCCCCC----CCCCCCCcEEecCCCc
Q 007252 283 GHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTN----TDSCRGLVCLKIESCN 357 (611)
Q Consensus 283 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~L~~L~l~~~~ 357 (611)
+++. +.......+..+++|+.|+++++.+.......+ ..+++|++|+++++..... +..+++|+.|++++++
T Consensus 215 s~N~--l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 215 SGNH--LSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAF-DNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp TTSC--CCEECTTTTTTCTTCCEEECTTCCCCEECTTSS-TTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred CCCc--cCccChhhhccCccCCEEECCCCceeEEChhhh-cCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence 6663 333334455666677777777665543222111 1445566666655521111 3344555555555443
No 76
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.42 E-value=1e-14 Score=147.87 Aligned_cols=237 Identities=19% Similarity=0.149 Sum_probs=150.6
Q ss_pred CCCceeccCCCCCccchhHHHHhhcCCCccEEEccCcccChHHHHHHHHhCCCCcEEeeccCCCCCCCCCCCCCcEEecC
Q 007252 275 SGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTDSCRGLVCLKIE 354 (611)
Q Consensus 275 ~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~ 354 (611)
++|+.|+++++. +.......+..+++|+.|++++|.+.... .+..+++|+.|+++
T Consensus 34 ~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-----------------------~l~~l~~L~~L~Ls 88 (487)
T 3oja_A 34 WNVKELDLSGNP--LSQISAADLAPFTKLELLNLSSNVLYETL-----------------------DLESLSTLRTLDLN 88 (487)
T ss_dssp GGCCEEECCSSC--CCCCCGGGGTTCTTCCEEECTTSCCEEEE-----------------------ECTTCTTCCEEECC
T ss_pred CCccEEEeeCCc--CCCCCHHHHhCCCCCCEEEeeCCCCCCCc-----------------------ccccCCCCCEEEec
Confidence 367777776663 23333345556666666666666543210 03344566666666
Q ss_pred CCccCChhHHHHHHhccCCCcEEecCCCCCCChhhhhhhccCCCceEEEecCCCCCChHhHHHHHhcCCCCcEEeccCCC
Q 007252 355 SCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCS 434 (611)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 434 (611)
++. +++.. ..++|+.|++++ +.++..... .+++|+.|+++++ .++......+ ..+++|+.|+++++
T Consensus 89 ~N~-l~~l~------~~~~L~~L~L~~-N~l~~~~~~---~l~~L~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~Ls~N- 154 (487)
T 3oja_A 89 NNY-VQELL------VGPSIETLHAAN-NNISRVSCS---RGQGKKNIYLANN-KITMLRDLDE-GCRSRVQYLDLKLN- 154 (487)
T ss_dssp SSE-EEEEE------ECTTCCEEECCS-SCCCCEEEC---CCSSCEEEECCSS-CCCSGGGBCG-GGGSSEEEEECTTS-
T ss_pred CCc-CCCCC------CCCCcCEEECcC-CcCCCCCcc---ccCCCCEEECCCC-CCCCCCchhh-cCCCCCCEEECCCC-
Confidence 543 22211 337899999998 566654332 4688999999987 5554332222 25789999999986
Q ss_pred CCCHHHHHHHHhcCccCceecccccCCCChHHHHHhhCCCCCCEEecCCCccccHHHHHHHHhcCCccCEeeccccCCCC
Q 007252 435 GIGDDGLAALSNGCKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKID 514 (611)
Q Consensus 435 ~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~ 514 (611)
.++......+...+++|+.|+++++ .++.. .....+++|+.|+++++ .++..... ...+++|+.|++++| .++
T Consensus 155 ~l~~~~~~~l~~~l~~L~~L~Ls~N-~l~~~--~~~~~l~~L~~L~Ls~N-~l~~~~~~--~~~l~~L~~L~Ls~N-~l~ 227 (487)
T 3oja_A 155 EIDTVNFAELAASSDTLEHLNLQYN-FIYDV--KGQVVFAKLKTLDLSSN-KLAFMGPE--FQSAAGVTWISLRNN-KLV 227 (487)
T ss_dssp CCCEEEGGGGGGGTTTCCEEECTTS-CCCEE--ECCCCCTTCCEEECCSS-CCCEECGG--GGGGTTCSEEECTTS-CCC
T ss_pred CCCCcChHHHhhhCCcccEEecCCC-ccccc--cccccCCCCCEEECCCC-CCCCCCHh--HcCCCCccEEEecCC-cCc
Confidence 5654444444446799999999985 56544 22335889999999984 56542221 346889999999999 666
Q ss_pred HHHHHHHHhhCCCCCEEEeccCCCChhHHHHHhccccccccceee
Q 007252 515 DSGFWALAYYSQNLRQINLSYCALSDMALCMVMGNMTRLQDAKLV 559 (611)
Q Consensus 515 ~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~l~~~~~L~~l~l~ 559 (611)
.. ......+++|+.|++++|++........+..++.|+.+.+.
T Consensus 228 ~l--p~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 228 LI--EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp EE--CTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred cc--chhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 42 22233468899999999998844443667777777766653
No 77
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.41 E-value=2.3e-13 Score=113.81 Aligned_cols=104 Identities=20% Similarity=0.328 Sum_probs=66.4
Q ss_pred CCCcEEeccCCCCCCHHHHHHHHhcCccCceecccccCCCChHHHHHhhCC----CCCCEEecCCCccccHHHHHHHHhc
Q 007252 423 LRIQGLDLYKCSGIGDDGLAALSNGCKKLKKLNLSYCVNVTDRGMEHIRFI----EDLSDLELRGLTKITSAGLTALAAG 498 (611)
Q Consensus 423 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~----~~L~~L~l~~c~~l~~~~~~~~~~~ 498 (611)
.+|++|++++|. +++.++..+ ..|++|++|+|++|..+++.++..+..+ ++|++|+|++|+++++.++..+. .
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~-~ 137 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH-H 137 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG-G
T ss_pred ceEeEEeCcCCC-ccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh-c
Confidence 356777777764 777666665 4567777777777767777777666653 35777777776667766666654 4
Q ss_pred CCccCEeeccccCCCCHHH--HHHHHhhCCCCC
Q 007252 499 CKRLADLDLKHCAKIDDSG--FWALAYYSQNLR 529 (611)
Q Consensus 499 ~~~L~~L~l~~c~~l~~~~--~~~~~~~~~~L~ 529 (611)
+++|+.|++++|+.+++.+ ...+.+.+|+++
T Consensus 138 ~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~ 170 (176)
T 3e4g_A 138 FRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLE 170 (176)
T ss_dssp CTTCCEEEEESCTTCCCHHHHHHHHHHHCTTCE
T ss_pred CCCCCEEECCCCCCCCchHHHHHHHHHHCCCcE
Confidence 6677777777776666654 234444555544
No 78
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.41 E-value=1.8e-12 Score=134.00 Aligned_cols=13 Identities=15% Similarity=0.186 Sum_probs=6.5
Q ss_pred CcCcEEeccCccc
Q 007252 199 LDLKSLDVSYLKL 211 (611)
Q Consensus 199 ~~L~~L~l~~~~~ 211 (611)
++|+.|++++|.+
T Consensus 61 ~~L~~L~L~~N~l 73 (622)
T 3g06_A 61 AHITTLVIPDNNL 73 (622)
T ss_dssp TTCSEEEECSCCC
T ss_pred CCCcEEEecCCCC
Confidence 3455555555533
No 79
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.40 E-value=5.5e-12 Score=122.38 Aligned_cols=172 Identities=22% Similarity=0.276 Sum_probs=140.4
Q ss_pred CCCceEEEecCCCCCChHhHHHHHhc----CCCCcEEeccCCCCCCHHHHHHHHhcCccCceecccccCCCChHHHHHhh
Q 007252 396 CSELLFLKLGLCENISDKGLFYIASN----CLRIQGLDLYKCSGIGDDGLAALSNGCKKLKKLNLSYCVNVTDRGMEHIR 471 (611)
Q Consensus 396 ~~~L~~L~l~~~~~~~~~~~~~l~~~----~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~ 471 (611)
.+.|+.|++++| .+++.+...++.. .++|++|++++| .+++.++..++..+++|++|+|++| .+++.+...+.
T Consensus 71 ~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~ 147 (372)
T 3un9_A 71 LSSLRQLNLAGV-RMTPVKCTVVAAVLGSGRHALDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLR 147 (372)
T ss_dssp HTTCCEEECTTS-CCCHHHHHHHHHHHSSCSSCEEEEECTTC-CCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHH
T ss_pred HhhCCEEEecCC-CCCHHHHHHHHHHHhhCCCCceEEEecCC-CCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHH
Confidence 468999999998 7888777666543 369999999997 7999999888888899999999995 79988877764
Q ss_pred -----CCCCCCEEecCCCccccHHHHHHHH---hcCCccCEeeccccCCCCHHHHHHHHh---hCCCCCEEEeccCCCCh
Q 007252 472 -----FIEDLSDLELRGLTKITSAGLTALA---AGCKRLADLDLKHCAKIDDSGFWALAY---YSQNLRQINLSYCALSD 540 (611)
Q Consensus 472 -----~~~~L~~L~l~~c~~l~~~~~~~~~---~~~~~L~~L~l~~c~~l~~~~~~~~~~---~~~~L~~L~l~~~~l~~ 540 (611)
..++|++|++++| .+++.+...++ ..+++|++|++++| .+++.+...+.. ..++|++|++++|.+++
T Consensus 148 ~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~ 225 (372)
T 3un9_A 148 DLLLHDQCQITTLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQELNVAYNGAGD 225 (372)
T ss_dssp HHHHSTTCCCCEEECCSS-CCHHHHHHHHHHHHHTCSSCCEEECTTS-SCHHHHHHHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred HHHHhcCCccceeeCCCC-CCChHHHHHHHHHHhcCCCcCEEeCCCC-CCCcHHHHHHHHHHhcCCCcCeEECCCCCCCH
Confidence 4689999999995 68876665553 46899999999999 899888766654 35799999999999998
Q ss_pred hHHH---HHhccccccccceeecccCCCHHHHHHHH
Q 007252 541 MALC---MVMGNMTRLQDAKLVHLTNCTREGFELAL 573 (611)
Q Consensus 541 ~~~~---~~l~~~~~L~~l~l~~~~~~~~~~~~~~~ 573 (611)
.+.. .++..+++|+.|++.++ .++..+...+.
T Consensus 226 ~g~~~l~~~L~~~~~L~~L~Ls~N-~i~~~g~~~L~ 260 (372)
T 3un9_A 226 TAALALARAAREHPSLELLHLYFN-ELSSEGRQVLR 260 (372)
T ss_dssp HHHHHHHHHHHHCSSCCEEECTTS-SCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCEEeccCC-CCCHHHHHHHH
Confidence 8762 33445789999999888 68888887654
No 80
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.40 E-value=9.5e-13 Score=136.09 Aligned_cols=266 Identities=18% Similarity=0.063 Sum_probs=134.0
Q ss_pred CcCcEEeccCcccChHHHHHhhhcCCCcEEEecCCCCCChhHHHHHHhcCCCccEEEeccccccChHHHHHHHhcCCCCc
Q 007252 199 LDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLL 278 (611)
Q Consensus 199 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~ 278 (611)
.+++.|+++++.++.. ...+ .++|++|+++++. ++.. ...+++|++|+++++..... + ..+++|+
T Consensus 40 ~~l~~L~ls~n~L~~l-p~~l--~~~L~~L~L~~N~-l~~l-----p~~l~~L~~L~Ls~N~l~~l---p---~~l~~L~ 104 (622)
T 3g06_A 40 NGNAVLNVGESGLTTL-PDCL--PAHITTLVIPDNN-LTSL-----PALPPELRTLEVSGNQLTSL---P---VLPPGLL 104 (622)
T ss_dssp HCCCEEECCSSCCSCC-CSCC--CTTCSEEEECSCC-CSCC-----CCCCTTCCEEEECSCCCSCC---C---CCCTTCC
T ss_pred CCCcEEEecCCCcCcc-Chhh--CCCCcEEEecCCC-CCCC-----CCcCCCCCEEEcCCCcCCcC---C---CCCCCCC
Confidence 3588888888866531 1112 2789999998864 4321 11368888888888643221 1 1456777
Q ss_pred eeccCCCCCccchhHHHHhhcCCCccEEEccCcccChHHHHHHHHhCCCCcEEeeccCCCCCC-CCCCCCCcEEecCCCc
Q 007252 279 QLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTN-TDSCRGLVCLKIESCN 357 (611)
Q Consensus 279 ~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~L~~L~l~~~~ 357 (611)
+|+++++.. .... ..+++|+.|++++|.+... ...+++|++|+++++. +.. ...
T Consensus 105 ~L~Ls~N~l--~~l~----~~l~~L~~L~L~~N~l~~l-----p~~l~~L~~L~Ls~N~-l~~l~~~------------- 159 (622)
T 3g06_A 105 ELSIFSNPL--THLP----ALPSGLCKLWIFGNQLTSL-----PVLPPGLQELSVSDNQ-LASLPAL------------- 159 (622)
T ss_dssp EEEECSCCC--CCCC----CCCTTCCEEECCSSCCSCC-----CCCCTTCCEEECCSSC-CSCCCCC-------------
T ss_pred EEECcCCcC--CCCC----CCCCCcCEEECCCCCCCcC-----CCCCCCCCEEECcCCc-CCCcCCc-------------
Confidence 777776643 1100 0345666676666654431 1123555555555542 111 122
Q ss_pred cCChhHHHHHHhccCCCcEEecCCCCCCChhhhhhhccCCCceEEEecCCCCCChHhHHHHHhcCCCCcEEeccCCCCCC
Q 007252 358 MITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIG 437 (611)
Q Consensus 358 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~ 437 (611)
.++|+.|++++ +.++... ..+++|+.|+++++ .++. +....++|+.|++++| .++
T Consensus 160 -------------~~~L~~L~L~~-N~l~~l~----~~~~~L~~L~Ls~N-~l~~-----l~~~~~~L~~L~L~~N-~l~ 214 (622)
T 3g06_A 160 -------------PSELCKLWAYN-NQLTSLP----MLPSGLQELSVSDN-QLAS-----LPTLPSELYKLWAYNN-RLT 214 (622)
T ss_dssp -------------CTTCCEEECCS-SCCSCCC----CCCTTCCEEECCSS-CCSC-----CCCCCTTCCEEECCSS-CCS
T ss_pred -------------cCCCCEEECCC-CCCCCCc----ccCCCCcEEECCCC-CCCC-----CCCccchhhEEECcCC-ccc
Confidence 24555555555 3333311 23455555555554 3322 1112355566665554 222
Q ss_pred HHHHHHHHhcCccCceecccccCCCChHHHHHhhCCCCCCEEecCCCccccHHHHHHHHhcCCccCEeeccccCCCCHHH
Q 007252 438 DDGLAALSNGCKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSG 517 (611)
Q Consensus 438 ~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 517 (611)
. +...+++|+.|+++++ .++... ..+++|+.|+++++ .++... ..+++|+.|++++| .++..
T Consensus 215 ~-----l~~~~~~L~~L~Ls~N-~L~~lp----~~l~~L~~L~Ls~N-~L~~lp-----~~~~~L~~L~Ls~N-~L~~l- 276 (622)
T 3g06_A 215 S-----LPALPSGLKELIVSGN-RLTSLP----VLPSELKELMVSGN-RLTSLP-----MLPSGLLSLSVYRN-QLTRL- 276 (622)
T ss_dssp S-----CCCCCTTCCEEECCSS-CCSCCC----CCCTTCCEEECCSS-CCSCCC-----CCCTTCCEEECCSS-CCCSC-
T ss_pred c-----cCCCCCCCCEEEccCC-ccCcCC----CCCCcCcEEECCCC-CCCcCC-----cccccCcEEeCCCC-CCCcC-
Confidence 1 1112355666666653 344322 33556666666663 443211 13566666666666 55422
Q ss_pred HHHHHhhCCCCCEEEeccCCCChhHHHHHhcc
Q 007252 518 FWALAYYSQNLRQINLSYCALSDMALCMVMGN 549 (611)
Q Consensus 518 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~~l~~ 549 (611)
......+++|+.|++++|+++.... ..+..
T Consensus 277 -p~~l~~l~~L~~L~L~~N~l~~~~~-~~l~~ 306 (622)
T 3g06_A 277 -PESLIHLSSETTVNLEGNPLSERTL-QALRE 306 (622)
T ss_dssp -CGGGGGSCTTCEEECCSCCCCHHHH-HHHHH
T ss_pred -CHHHhhccccCEEEecCCCCCCcCH-HHHHh
Confidence 1122345666777777766665555 44443
No 81
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.39 E-value=8.4e-13 Score=125.37 Aligned_cols=191 Identities=17% Similarity=0.180 Sum_probs=96.1
Q ss_pred hCCCCcEEeeccCCCC--CCCCCCCCCcEEecCCCccCChhHHHHHHhccCCCcEEecCCCCCCChhhhhhhccCCCceE
Q 007252 324 NCKSLVEIGLSKCLGV--TNTDSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLF 401 (611)
Q Consensus 324 ~~~~L~~L~l~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~ 401 (611)
.+++|++|+++++... ..+..+++|+.|+++++. +.+... ...+++|++|++++ +.++.. ..+..+++|++
T Consensus 39 ~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~-i~~~~~---~~~l~~L~~L~L~~-n~l~~~--~~~~~l~~L~~ 111 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQ-ITDLAP---LKNLTKITELELSG-NPLKNV--SAIAGLQSIKT 111 (308)
T ss_dssp HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSC-CCCCGG---GTTCCSCCEEECCS-CCCSCC--GGGTTCTTCCE
T ss_pred HcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCc-CCCChh---HccCCCCCEEEccC-CcCCCc--hhhcCCCCCCE
Confidence 3467788888776321 114556666666666653 222211 23556666666666 344432 24555666666
Q ss_pred EEecCCCCCChHhHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhcCccCceecccccCCCChHHHHHhhCCCCCCEEec
Q 007252 402 LKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLEL 481 (611)
Q Consensus 402 L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l 481 (611)
|+++++ .+++.. . ...+++|++|++++| .++.... ...+++|+.|++++| .+++... +..+++|+.|++
T Consensus 112 L~l~~n-~l~~~~--~-l~~l~~L~~L~l~~n-~l~~~~~---l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l 180 (308)
T 1h6u_A 112 LDLTST-QITDVT--P-LAGLSNLQVLYLDLN-QITNISP---LAGLTNLQYLSIGNA-QVSDLTP--LANLSKLTTLKA 180 (308)
T ss_dssp EECTTS-CCCCCG--G-GTTCTTCCEEECCSS-CCCCCGG---GGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEEC
T ss_pred EECCCC-CCCCch--h-hcCCCCCCEEECCCC-ccCcCcc---ccCCCCccEEEccCC-cCCCChh--hcCCCCCCEEEC
Confidence 666665 333321 1 224566666666654 2322111 234566666666653 3443222 455566666666
Q ss_pred CCCccccHHHHHHHHhcCCccCEeeccccCCCCHHHHHHHHhhCCCCCEEEeccCCCCh
Q 007252 482 RGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQNLRQINLSYCALSD 540 (611)
Q Consensus 482 ~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~ 540 (611)
+++ .+++... ...+++|+.|++++| .+++.. . ...+++|+.|++++|+++.
T Consensus 181 ~~n-~l~~~~~---l~~l~~L~~L~L~~N-~l~~~~--~-l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 181 DDN-KISDISP---LASLPNLIEVHLKNN-QISDVS--P-LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CSS-CCCCCGG---GGGCTTCCEEECTTS-CCCBCG--G-GTTCTTCCEEEEEEEEEEC
T ss_pred CCC-ccCcChh---hcCCCCCCEEEccCC-ccCccc--c-ccCCCCCCEEEccCCeeec
Confidence 653 3332211 234556666666666 444322 1 2334566666666665443
No 82
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.37 E-value=1.6e-12 Score=123.38 Aligned_cols=167 Identities=21% Similarity=0.234 Sum_probs=66.0
Q ss_pred ccCCCcEEecCCCCCCChhhhhhhccCCCceEEEecCCCCCChHhHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhcCc
Q 007252 370 FCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCK 449 (611)
Q Consensus 370 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 449 (611)
.+++|++|++++ +.+++... +..+++|++|+++++ .+++.. . ...+++|++|++++| .++.. .. ...++
T Consensus 61 ~l~~L~~L~L~~-n~i~~~~~--~~~l~~L~~L~L~~n-~l~~~~--~-~~~l~~L~~L~l~~n-~l~~~--~~-l~~l~ 129 (308)
T 1h6u_A 61 YLNNLIGLELKD-NQITDLAP--LKNLTKITELELSGN-PLKNVS--A-IAGLQSIKTLDLTST-QITDV--TP-LAGLS 129 (308)
T ss_dssp GCTTCCEEECCS-SCCCCCGG--GTTCCSCCEEECCSC-CCSCCG--G-GTTCTTCCEEECTTS-CCCCC--GG-GTTCT
T ss_pred ccCCCCEEEccC-CcCCCChh--HccCCCCCEEEccCC-cCCCch--h-hcCCCCCCEEECCCC-CCCCc--hh-hcCCC
Confidence 344455555544 23332221 444444555555444 222211 1 113444555555443 22211 11 23344
Q ss_pred cCceecccccCCCChHHHHHhhCCCCCCEEecCCCccccHHHHHHHHhcCCccCEeeccccCCCCHHHHHHHHhhCCCCC
Q 007252 450 KLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQNLR 529 (611)
Q Consensus 450 ~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~ 529 (611)
+|++|+++++ .++.... +..+++|+.|++++| .+++... ...+++|+.|++++| .+++... ...+++|+
T Consensus 130 ~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n-~l~~~~~---l~~l~~L~~L~l~~n-~l~~~~~---l~~l~~L~ 198 (308)
T 1h6u_A 130 NLQVLYLDLN-QITNISP--LAGLTNLQYLSIGNA-QVSDLTP---LANLSKLTTLKADDN-KISDISP---LASLPNLI 198 (308)
T ss_dssp TCCEEECCSS-CCCCCGG--GGGCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSS-CCCCCGG---GGGCTTCC
T ss_pred CCCEEECCCC-ccCcCcc--ccCCCCccEEEccCC-cCCCChh---hcCCCCCCEEECCCC-ccCcChh---hcCCCCCC
Confidence 4555554442 2332211 344444555555442 2322111 223444555555544 3332211 22234455
Q ss_pred EEEeccCCCChhHHHHHhccccccccceeecc
Q 007252 530 QINLSYCALSDMALCMVMGNMTRLQDAKLVHL 561 (611)
Q Consensus 530 ~L~l~~~~l~~~~~~~~l~~~~~L~~l~l~~~ 561 (611)
+|++++|.+++.. .+..+++|+.|++.++
T Consensus 199 ~L~L~~N~l~~~~---~l~~l~~L~~L~l~~N 227 (308)
T 1h6u_A 199 EVHLKNNQISDVS---PLANTSNLFIVTLTNQ 227 (308)
T ss_dssp EEECTTSCCCBCG---GGTTCTTCCEEEEEEE
T ss_pred EEEccCCccCccc---cccCCCCCCEEEccCC
Confidence 5555555444332 1344444444444443
No 83
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.35 E-value=2.2e-13 Score=130.59 Aligned_cols=125 Identities=17% Similarity=0.184 Sum_probs=57.5
Q ss_pred cCCCCceeccCCCCCccchhHHHHhhcCCCccEEEccCcccChHHHHHHHHhCCCCcEEeeccCCCCCC----CCCCCCC
Q 007252 273 GHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTN----TDSCRGL 348 (611)
Q Consensus 273 ~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~L 348 (611)
++++|++|+++++.. . .....+..+++|++|+++++.+... ......+++|++|++++|..... +..+++|
T Consensus 181 ~l~~L~~L~L~~n~l--~-~lp~~l~~l~~L~~L~L~~N~l~~l--~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L 255 (328)
T 4fcg_A 181 GLVNLQSLRLEWTGI--R-SLPASIANLQNLKSLKIRNSPLSAL--GPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPL 255 (328)
T ss_dssp ESTTCCEEEEEEECC--C-CCCGGGGGCTTCCEEEEESSCCCCC--CGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCC
T ss_pred cCCCCCEEECcCCCc--C-cchHhhcCCCCCCEEEccCCCCCcC--chhhccCCCCCEEECcCCcchhhhHHHhcCCCCC
Confidence 355666666665532 2 2233456666777777766655421 11122456666666666543322 3444555
Q ss_pred cEEecCCCccCChhHHHHHHhccCCCcEEecCCCCCCChhhhhhhccCCCceEEEec
Q 007252 349 VCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLG 405 (611)
Q Consensus 349 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 405 (611)
+.|++++|....... .....+++|++|++++| .+.......+..+++|+.+.+.
T Consensus 256 ~~L~L~~n~~~~~~p--~~~~~l~~L~~L~L~~n-~~~~~iP~~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 256 KRLILKDCSNLLTLP--LDIHRLTQLEKLDLRGC-VNLSRLPSLIAQLPANCIILVP 309 (328)
T ss_dssp CEEECTTCTTCCBCC--TTGGGCTTCCEEECTTC-TTCCCCCGGGGGSCTTCEEECC
T ss_pred CEEECCCCCchhhcc--hhhhcCCCCCEEeCCCC-CchhhccHHHhhccCceEEeCC
Confidence 555555443222111 00123445555555552 2222223334444444444443
No 84
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.31 E-value=2.6e-13 Score=130.09 Aligned_cols=231 Identities=16% Similarity=0.169 Sum_probs=120.7
Q ss_pred CCccceeecccccccChHHHHHHHHcCCcCcEEeccCcccChHHHHHhhhcCCCcEEEecCCCCCChhHHHHHHhcCCCc
Q 007252 172 CVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLL 251 (611)
Q Consensus 172 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 251 (611)
.++++.|+++++ .++.. ..-...+++|++|+++++.+. .....+..+++|++|+++++. +.. ....+. .+++|
T Consensus 80 ~~~l~~L~L~~n-~l~~l--p~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~-l~~-lp~~l~-~l~~L 152 (328)
T 4fcg_A 80 QPGRVALELRSV-PLPQF--PDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNP-LRA-LPASIA-SLNRL 152 (328)
T ss_dssp STTCCEEEEESS-CCSSC--CSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCC-CCC-CCGGGG-GCTTC
T ss_pred ccceeEEEccCC-Cchhc--ChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCc-ccc-CcHHHh-cCcCC
Confidence 466777777665 33211 111223566666666666554 222335566666666666543 321 111222 25566
Q ss_pred cEEEeccccccChHHHHHHHhcCCCCceeccCCCCCccchhHHHHhhcCCCccEEEccCcccChHHHHHHHHhCCCCcEE
Q 007252 252 KTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEI 331 (611)
Q Consensus 252 ~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L 331 (611)
++|++++|...... ...+....+ ...+..+++|+.|+++++.+.. +......+++|++|
T Consensus 153 ~~L~L~~n~~~~~~--------p~~~~~~~~-----------~~~~~~l~~L~~L~L~~n~l~~--lp~~l~~l~~L~~L 211 (328)
T 4fcg_A 153 RELSIRACPELTEL--------PEPLASTDA-----------SGEHQGLVNLQSLRLEWTGIRS--LPASIANLQNLKSL 211 (328)
T ss_dssp CEEEEEEETTCCCC--------CSCSEEEC------------CCCEEESTTCCEEEEEEECCCC--CCGGGGGCTTCCEE
T ss_pred CEEECCCCCCcccc--------ChhHhhccc-----------hhhhccCCCCCEEECcCCCcCc--chHhhcCCCCCCEE
Confidence 66666554322110 001111111 1124457788888888776652 11112355666666
Q ss_pred eeccCCCCCCCCCCCCCcEEecCCCccCChhHHHHHHhccCCCcEEecCCCCCCChhhhhhhccCCCceEEEecCCCCCC
Q 007252 332 GLSKCLGVTNTDSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENIS 411 (611)
Q Consensus 332 ~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 411 (611)
+++++. +... ......+++|++|++++| .+.......+..+++|+.|++++|....
T Consensus 212 ~L~~N~---------------------l~~l--~~~l~~l~~L~~L~Ls~n-~~~~~~p~~~~~l~~L~~L~L~~n~~~~ 267 (328)
T 4fcg_A 212 KIRNSP---------------------LSAL--GPAIHHLPKLEELDLRGC-TALRNYPPIFGGRAPLKRLILKDCSNLL 267 (328)
T ss_dssp EEESSC---------------------CCCC--CGGGGGCTTCCEEECTTC-TTCCBCCCCTTCCCCCCEEECTTCTTCC
T ss_pred EccCCC---------------------CCcC--chhhccCCCCCEEECcCC-cchhhhHHHhcCCCCCCEEECCCCCchh
Confidence 666552 1110 001235678888888873 4444444566678888888888874433
Q ss_pred hHhHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhcCccCceecccc
Q 007252 412 DKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKKLKKLNLSY 458 (611)
Q Consensus 412 ~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 458 (611)
... ..+ ..+++|++|++++|+..+. +......+++|+.+.+..
T Consensus 268 ~~p-~~~-~~l~~L~~L~L~~n~~~~~--iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 268 TLP-LDI-HRLTQLEKLDLRGCVNLSR--LPSLIAQLPANCIILVPP 310 (328)
T ss_dssp BCC-TTG-GGCTTCCEEECTTCTTCCC--CCGGGGGSCTTCEEECCG
T ss_pred hcc-hhh-hcCCCCCEEeCCCCCchhh--ccHHHhhccCceEEeCCH
Confidence 221 112 3678888888888755442 122234567888887765
No 85
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.31 E-value=8.9e-14 Score=132.64 Aligned_cols=200 Identities=19% Similarity=0.155 Sum_probs=90.4
Q ss_pred cCCCcEEecCCCCCCChhhhhhh--ccCCCceEEEecCCCCCChH--hHHHHHh-cCCCCcEEeccCCCCCCHHHHHHHH
Q 007252 371 CLRLEEIDLTDCNGVNDKGLEYL--SRCSELLFLKLGLCENISDK--GLFYIAS-NCLRIQGLDLYKCSGIGDDGLAALS 445 (611)
Q Consensus 371 ~~~L~~L~l~~~~~~~~~~~~~l--~~~~~L~~L~l~~~~~~~~~--~~~~l~~-~~~~L~~L~l~~~~~~~~~~~~~~~ 445 (611)
+++|++|++++ +.++......+ ..+++|++|+++++ .++.. .+..+.. .+++|++|+++++ .++..... ..
T Consensus 94 l~~L~~L~L~~-n~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~~~~~~L~~L~L~~N-~l~~~~~~-~~ 169 (312)
T 1wwl_A 94 ISGLQELTLEN-LEVTGTAPPPLLEATGPDLNILNLRNV-SWATRDAWLAELQQWLKPGLKVLSIAQA-HSLNFSCE-QV 169 (312)
T ss_dssp TSCCCEEEEEE-EBCBSCCCCCSSSCCSCCCSEEEEESC-BCSSSSSHHHHHHTTCCTTCCEEEEESC-SCCCCCTT-TC
T ss_pred cCCccEEEccC-CcccchhHHHHHHhcCCCccEEEccCC-CCcchhHHHHHHHHhhcCCCcEEEeeCC-CCccchHH-Hh
Confidence 45666666665 34443333322 45566666666655 33322 1111110 1256666666654 23221111 11
Q ss_pred hcCccCceecccccCCCChH-H-HHHh--hCCCCCCEEecCCCccccH--HHHHHHHhcCCccCEeeccccCCCCHHHHH
Q 007252 446 NGCKKLKKLNLSYCVNVTDR-G-MEHI--RFIEDLSDLELRGLTKITS--AGLTALAAGCKRLADLDLKHCAKIDDSGFW 519 (611)
Q Consensus 446 ~~~~~L~~L~l~~c~~l~~~-~-~~~l--~~~~~L~~L~l~~c~~l~~--~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~ 519 (611)
..+++|++|+++++ .+... + ...+ ..+++|++|+++++ .++. .....+...+++|+.|++++| .++.....
T Consensus 170 ~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~ 246 (312)
T 1wwl_A 170 RVFPALSTLDLSDN-PELGERGLISALCPLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHN-SLRDAAGA 246 (312)
T ss_dssp CCCSSCCEEECCSC-TTCHHHHHHHHSCTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTS-CCCSSCCC
T ss_pred ccCCCCCEEECCCC-CcCcchHHHHHHHhccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCC-cCCcccch
Confidence 23566666666663 23321 1 1222 45666666666663 4442 112233344566666666666 44432100
Q ss_pred HHHhhCCCCCEEEeccCCCChhHHHHHhccccccccceeecccCCCHHHHHHHHhhcCCCccchhhh
Q 007252 520 ALAYYSQNLRQINLSYCALSDMALCMVMGNMTRLQDAKLVHLTNCTREGFELALRSCCMRIKKVKLL 586 (611)
Q Consensus 520 ~~~~~~~~L~~L~l~~~~l~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~c~~l~~l~l~ 586 (611)
.....+++|++|++++|.++..+. .+. ++|+.|++.++ +++.. .. ...+++|+.+++.
T Consensus 247 ~~~~~l~~L~~L~Ls~N~l~~ip~--~~~--~~L~~L~Ls~N-~l~~~--p~--~~~l~~L~~L~L~ 304 (312)
T 1wwl_A 247 PSCDWPSQLNSLNLSFTGLKQVPK--GLP--AKLSVLDLSYN-RLDRN--PS--PDELPQVGNLSLK 304 (312)
T ss_dssp SCCCCCTTCCEEECTTSCCSSCCS--SCC--SEEEEEECCSS-CCCSC--CC--TTTSCEEEEEECT
T ss_pred hhhhhcCCCCEEECCCCccChhhh--hcc--CCceEEECCCC-CCCCC--hh--HhhCCCCCEEecc
Confidence 111223566666666666553322 121 55666665554 22221 11 2335566666653
No 86
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.27 E-value=9.4e-13 Score=122.76 Aligned_cols=191 Identities=15% Similarity=0.098 Sum_probs=112.7
Q ss_pred cCCCcEEecCCCCCCChhhhhhhccCCCceEEEecCCCCCChHhHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhcCcc
Q 007252 371 CLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKK 450 (611)
Q Consensus 371 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 450 (611)
+++|+.|++.+ +.+++ +..+..+++|+.|+++++ .+++.. . ...+++|++|++++| .++.... .....+++
T Consensus 40 l~~L~~L~l~~-~~i~~--~~~l~~l~~L~~L~l~~n-~l~~~~--~-l~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~ 110 (272)
T 3rfs_A 40 LNSIDQIIANN-SDIKS--VQGIQYLPNVRYLALGGN-KLHDIS--A-LKELTNLTYLILTGN-QLQSLPN-GVFDKLTN 110 (272)
T ss_dssp HTTCCEEECTT-SCCCC--CTTGGGCTTCCEEECTTS-CCCCCG--G-GTTCTTCCEEECTTS-CCCCCCT-TTTTTCTT
T ss_pred ccceeeeeeCC-CCccc--ccccccCCCCcEEECCCC-CCCCch--h-hcCCCCCCEEECCCC-ccCccCh-hHhcCCcC
Confidence 45667777766 34433 234556677777777766 343321 1 225677777777765 3332111 11234677
Q ss_pred CceecccccCCCChHHHHHhhCCCCCCEEecCCCccccHHHHHHHHhcCCccCEeeccccCCCCHHHHHHHHhhCCCCCE
Q 007252 451 LKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQNLRQ 530 (611)
Q Consensus 451 L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~ 530 (611)
|++|+++++ .++......+..+++|+.|++++| .++.... .....+++|+.|++++| .++.... .....+++|++
T Consensus 111 L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~ 185 (272)
T 3rfs_A 111 LKELVLVEN-QLQSLPDGVFDKLTNLTYLNLAHN-QLQSLPK-GVFDKLTNLTELDLSYN-QLQSLPE-GVFDKLTQLKD 185 (272)
T ss_dssp CCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCE
T ss_pred CCEEECCCC-cCCccCHHHhccCCCCCEEECCCC-ccCccCH-HHhccCccCCEEECCCC-CcCccCH-HHhcCCccCCE
Confidence 777777774 455444444667778888888774 4543211 12235778888888888 6653321 12234578888
Q ss_pred EEeccCCCChhHHHHHhccccccccceeecccCCCHHHHHHHHhhcCCCccchhhh
Q 007252 531 INLSYCALSDMALCMVMGNMTRLQDAKLVHLTNCTREGFELALRSCCMRIKKVKLL 586 (611)
Q Consensus 531 L~l~~~~l~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~c~~l~~l~l~ 586 (611)
|++++|.++.... ..+..+++|+.|++.+++-. ..|++++.+++.
T Consensus 186 L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~----------~~~~~l~~l~~~ 230 (272)
T 3rfs_A 186 LRLYQNQLKSVPD-GVFDRLTSLQYIWLHDNPWD----------CTCPGIRYLSEW 230 (272)
T ss_dssp EECCSSCCSCCCT-TTTTTCTTCCEEECCSSCBC----------CCTTTTHHHHHH
T ss_pred EECCCCcCCccCH-HHHhCCcCCCEEEccCCCcc----------ccCcHHHHHHHH
Confidence 8888888776655 55677788888887766321 236667766654
No 87
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.27 E-value=4.1e-13 Score=125.11 Aligned_cols=130 Identities=14% Similarity=0.072 Sum_probs=53.0
Q ss_pred CCCcEEecCCCccCChhHHHHHHhccCCCcEEecCCCCCCChhhhhhhccCCCceEEEecCCCCCChHhHHHHHhcCCCC
Q 007252 346 RGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRI 425 (611)
Q Consensus 346 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 425 (611)
+++++|+++++. +....... ...+++|++|++++ +.++......+..+++|++|+++++ .++......+ ..+++|
T Consensus 37 ~~l~~L~l~~n~-l~~~~~~~-~~~l~~L~~L~l~~-n~l~~i~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~-~~l~~L 111 (270)
T 2o6q_A 37 ADTKKLDLQSNK-LSSLPSKA-FHRLTKLRLLYLND-NKLQTLPAGIFKELKNLETLWVTDN-KLQALPIGVF-DQLVNL 111 (270)
T ss_dssp TTCSEEECCSSC-CSCCCTTS-SSSCTTCCEEECCS-SCCSCCCTTTTSSCTTCCEEECCSS-CCCCCCTTTT-TTCSSC
T ss_pred CCCCEEECcCCC-CCeeCHHH-hcCCCCCCEEECCC-CccCeeChhhhcCCCCCCEEECCCC-cCCcCCHhHc-ccccCC
Confidence 455666665543 22111111 11445555665555 3444333333445555555555554 2322111111 134555
Q ss_pred cEEeccCCCCCCHHHHHHHHhcCccCceecccccCCCChHHHHHhhCCCCCCEEecCC
Q 007252 426 QGLDLYKCSGIGDDGLAALSNGCKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRG 483 (611)
Q Consensus 426 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~ 483 (611)
++|+++++ .++..... ....+++|++|+++++ .++......+..+++|+.|++++
T Consensus 112 ~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~ 166 (270)
T 2o6q_A 112 AELRLDRN-QLKSLPPR-VFDSLTKLTYLSLGYN-ELQSLPKGVFDKLTSLKELRLYN 166 (270)
T ss_dssp CEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEECCCC-ccCeeCHH-HhCcCcCCCEEECCCC-cCCccCHhHccCCcccceeEecC
Confidence 55555543 22211100 1123445555555442 33333323334444455555444
No 88
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.26 E-value=3.7e-13 Score=126.06 Aligned_cols=34 Identities=21% Similarity=0.223 Sum_probs=17.9
Q ss_pred CCCEEEeccCCCChhHHHHHhccccccccceeecc
Q 007252 527 NLRQINLSYCALSDMALCMVMGNMTRLQDAKLVHL 561 (611)
Q Consensus 527 ~L~~L~l~~~~l~~~~~~~~l~~~~~L~~l~l~~~ 561 (611)
+|++|++++|.++.... ..+..+++|+.|++.+.
T Consensus 201 ~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 201 RLKELALDTNQLKSVPD-GIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp CEEEEECCSSCCSCCCT-TTTTTCCSCCEEECCSS
T ss_pred cccEEECCCCceeecCH-hHhcccccccEEEccCC
Confidence 55556666555554443 33445555555555443
No 89
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.25 E-value=4.6e-12 Score=111.65 Aligned_cols=152 Identities=16% Similarity=0.123 Sum_probs=71.8
Q ss_pred cCCCcEEecCCCCCCChhhhhhhccCCCceEEEecCCCCCChHhHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhcCcc
Q 007252 371 CLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKK 450 (611)
Q Consensus 371 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 450 (611)
+++|++|++++ +.+++.. .+..+++|++|++++| .+++.. . ...+++|++|++++| .++......+ ..+++
T Consensus 43 l~~L~~L~l~~-n~i~~l~--~l~~l~~L~~L~l~~n-~~~~~~--~-l~~l~~L~~L~l~~n-~l~~~~~~~l-~~l~~ 113 (197)
T 4ezg_A 43 MNSLTYITLAN-INVTDLT--GIEYAHNIKDLTINNI-HATNYN--P-ISGLSNLERLRIMGK-DVTSDKIPNL-SGLTS 113 (197)
T ss_dssp HHTCCEEEEES-SCCSCCT--TGGGCTTCSEEEEESC-CCSCCG--G-GTTCTTCCEEEEECT-TCBGGGSCCC-TTCTT
T ss_pred cCCccEEeccC-CCccChH--HHhcCCCCCEEEccCC-CCCcch--h-hhcCCCCCEEEeECC-ccCcccChhh-cCCCC
Confidence 34666666666 4444321 3555566666666665 333221 1 124556666666554 3332222222 23455
Q ss_pred CceecccccCCCChHHHHHhhCCCCCCEEecCCCccccHHHHHHHHhcCCccCEeeccccCCCCHHHHHHHHhhCCCCCE
Q 007252 451 LKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQNLRQ 530 (611)
Q Consensus 451 L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~ 530 (611)
|++|++++| .+++.....+..+++|++|++++|..+++.. ....+++|+.|++++| .+++.. ....+++|+.
T Consensus 114 L~~L~Ls~n-~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~---~l~~l~~L~~L~l~~n-~i~~~~---~l~~l~~L~~ 185 (197)
T 4ezg_A 114 LTLLDISHS-AHDDSILTKINTLPKVNSIDLSYNGAITDIM---PLKTLPELKSLNIQFD-GVHDYR---GIEDFPKLNQ 185 (197)
T ss_dssp CCEEECCSS-BCBGGGHHHHTTCSSCCEEECCSCTBCCCCG---GGGGCSSCCEEECTTB-CCCCCT---TGGGCSSCCE
T ss_pred CCEEEecCC-ccCcHhHHHHhhCCCCCEEEccCCCCccccH---hhcCCCCCCEEECCCC-CCcChH---HhccCCCCCE
Confidence 566655552 4554444555555556666655543233321 1234555555555555 444321 1223455555
Q ss_pred EEeccCCCC
Q 007252 531 INLSYCALS 539 (611)
Q Consensus 531 L~l~~~~l~ 539 (611)
|++++|+++
T Consensus 186 L~l~~N~i~ 194 (197)
T 4ezg_A 186 LYAFSQTIG 194 (197)
T ss_dssp EEECBC---
T ss_pred EEeeCcccC
Confidence 555555543
No 90
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.24 E-value=2.1e-12 Score=120.29 Aligned_cols=179 Identities=13% Similarity=0.077 Sum_probs=95.4
Q ss_pred CCCcEEecCCCCCCChhhhhhhccCCCceEEEecCCCCCChHhHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhcCccC
Q 007252 372 LRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKKL 451 (611)
Q Consensus 372 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 451 (611)
+++++|++++ +.++......+..+++|++|+++++ .++...... ...+++|++|+++++ .++.... .....+++|
T Consensus 37 ~~l~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~-~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L 111 (270)
T 2o6q_A 37 ADTKKLDLQS-NKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGI-FKELKNLETLWVTDN-KLQALPI-GVFDQLVNL 111 (270)
T ss_dssp TTCSEEECCS-SCCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTT-TSSCTTCCEEECCSS-CCCCCCT-TTTTTCSSC
T ss_pred CCCCEEECcC-CCCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhh-hcCCCCCCEEECCCC-cCCcCCH-hHcccccCC
Confidence 3567777766 4555544445666667777777665 333221111 124566777777664 3332111 112345667
Q ss_pred ceecccccCCCChHHHHHhhCCCCCCEEecCCCccccHHHHHHHHhcCCccCEeeccccCCCCHHHHHHHHhhCCCCCEE
Q 007252 452 KKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQNLRQI 531 (611)
Q Consensus 452 ~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L 531 (611)
++|++++ +.++......+..+++|++|+++++ .++.... .....+++|+.|++++| .++......+ ..+++|++|
T Consensus 112 ~~L~l~~-n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~~-~~l~~L~~L 186 (270)
T 2o6q_A 112 AELRLDR-NQLKSLPPRVFDSLTKLTYLSLGYN-ELQSLPK-GVFDKLTSLKELRLYNN-QLKRVPEGAF-DKLTELKTL 186 (270)
T ss_dssp CEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-CCSCCCTTTT-TTCTTCCEE
T ss_pred CEEECCC-CccCeeCHHHhCcCcCCCEEECCCC-cCCccCH-hHccCCcccceeEecCC-cCcEeChhHh-ccCCCcCEE
Confidence 7777766 3455444444556667777777663 3432211 11234666777777766 4443221111 234667777
Q ss_pred EeccCCCChhHHHHHhccccccccceeecc
Q 007252 532 NLSYCALSDMALCMVMGNMTRLQDAKLVHL 561 (611)
Q Consensus 532 ~l~~~~l~~~~~~~~l~~~~~L~~l~l~~~ 561 (611)
++++|.++.... ..+..+++|+.|++.++
T Consensus 187 ~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N 215 (270)
T 2o6q_A 187 KLDNNQLKRVPE-GAFDSLEKLKMLQLQEN 215 (270)
T ss_dssp ECCSSCCSCCCT-TTTTTCTTCCEEECCSS
T ss_pred ECCCCcCCcCCH-HHhccccCCCEEEecCC
Confidence 777776665544 44556666666666554
No 91
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.23 E-value=3.9e-13 Score=125.90 Aligned_cols=201 Identities=18% Similarity=0.088 Sum_probs=133.9
Q ss_pred CCCcEEeeccCCCCCC-----CCCCCCCcEEecCCCccCChhHHHHHHhccCCCcEEecCCCCCCChhhhhhhccCCCce
Q 007252 326 KSLVEIGLSKCLGVTN-----TDSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELL 400 (611)
Q Consensus 326 ~~L~~L~l~~~~~~~~-----~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 400 (611)
+++++|+++++. ++. +..+++|++|+++++. +....... ...+++|++|++++ +.++......+..+++|+
T Consensus 28 ~~l~~L~ls~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~-~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~ 103 (276)
T 2z62_A 28 FSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGA-YQSLSHLSTLILTG-NPIQSLALGAFSGLSSLQ 103 (276)
T ss_dssp TTCCEEECTTCC-CCEECTTTTTTCTTCSEEECTTCC-CCEECTTT-TTTCTTCCEEECTT-CCCCEECTTTTTTCTTCC
T ss_pred CCccEEECCCCc-ccccCHhHhccccCCcEEECCCCc-CCccCHHH-ccCCcCCCEEECCC-CccCccChhhhcCCcccc
Confidence 579999998874 222 6778899999999864 43322222 23678999999998 677776667788899999
Q ss_pred EEEecCCCCCChHhHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhcCccCceecccccCCCChH---HHHHhhCCCCCC
Q 007252 401 FLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKKLKKLNLSYCVNVTDR---GMEHIRFIEDLS 477 (611)
Q Consensus 401 ~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~---~~~~l~~~~~L~ 477 (611)
+|+++++ .++...... ...+++|++|+++++ .++...+......+++|++|+++++ .++.. .+..+.+++.|.
T Consensus 104 ~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~l~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~l~ 179 (276)
T 2z62_A 104 KLVAVET-NLASLENFP-IGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLN 179 (276)
T ss_dssp EEECTTS-CCCCSTTCC-CTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSS-CCCEECGGGGHHHHTCTTCC
T ss_pred EEECCCC-CccccCchh-cccCCCCCEEECcCC-ccceecCchhhccCCCCCEEECCCC-CCCcCCHHHhhhhhhccccc
Confidence 9999887 443322211 236789999999986 4443222233456789999999984 56544 334444555555
Q ss_pred -EEecCCCccccHHHHHHHHhcCCccCEeeccccCCCCHHHHHHHHhhCCCCCEEEeccCCCC
Q 007252 478 -DLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQNLRQINLSYCALS 539 (611)
Q Consensus 478 -~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~~~l~ 539 (611)
.|+++++ .++..... .....+|+.|++++| .++.... .....+++|++|++++|+++
T Consensus 180 l~L~ls~n-~l~~~~~~--~~~~~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 180 LSLDLSLN-PMNFIQPG--AFKEIRLKELALDTN-QLKSVPD-GIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp EEEECCSS-CCCEECTT--SSCSCCEEEEECCSS-CCSCCCT-TTTTTCCSCCEEECCSSCBC
T ss_pred eeeecCCC-cccccCcc--ccCCCcccEEECCCC-ceeecCH-hHhcccccccEEEccCCccc
Confidence 8899884 55432211 112458999999999 6664322 22244689999999999865
No 92
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.22 E-value=1.7e-11 Score=115.15 Aligned_cols=173 Identities=20% Similarity=0.167 Sum_probs=90.3
Q ss_pred CCCCCcEEecCCCccCChhHHHHHHhccCCCcEEecCCCCCCChhhhhhhccCCCceEEEecCCCCCChHhHHHHHhcCC
Q 007252 344 SCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCL 423 (611)
Q Consensus 344 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 423 (611)
.+++|+.|+++++. +... .. ...+++|++|++++ +.+++... +..+++|+.|+++++ .+++.. . ...++
T Consensus 44 ~l~~L~~L~l~~~~-i~~~--~~-~~~l~~L~~L~L~~-n~l~~~~~--l~~l~~L~~L~l~~n-~l~~~~--~-l~~l~ 112 (291)
T 1h6t_A 44 ELNSIDQIIANNSD-IKSV--QG-IQYLPNVTKLFLNG-NKLTDIKP--LANLKNLGWLFLDEN-KVKDLS--S-LKDLK 112 (291)
T ss_dssp HHHTCCEEECTTSC-CCCC--TT-GGGCTTCCEEECCS-SCCCCCGG--GTTCTTCCEEECCSS-CCCCGG--G-GTTCT
T ss_pred hcCcccEEEccCCC-cccC--hh-HhcCCCCCEEEccC-CccCCCcc--cccCCCCCEEECCCC-cCCCCh--h-hccCC
Confidence 45566777776654 2221 11 22556677777766 45544322 556666777777665 343321 1 22556
Q ss_pred CCcEEeccCCCCCCHHHHHHHHhcCccCceecccccCCCChHHHHHhhCCCCCCEEecCCCccccHHHHHHHHhcCCccC
Q 007252 424 RIQGLDLYKCSGIGDDGLAALSNGCKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLA 503 (611)
Q Consensus 424 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~ 503 (611)
+|++|++++| .++.. . ....+++|+.|+++++ .++.. ..+..+++|+.|++++| .+++... ...+++|+
T Consensus 113 ~L~~L~L~~n-~i~~~--~-~l~~l~~L~~L~l~~n-~l~~~--~~l~~l~~L~~L~L~~N-~l~~~~~---l~~l~~L~ 181 (291)
T 1h6t_A 113 KLKSLSLEHN-GISDI--N-GLVHLPQLESLYLGNN-KITDI--TVLSRLTKLDTLSLEDN-QISDIVP---LAGLTKLQ 181 (291)
T ss_dssp TCCEEECTTS-CCCCC--G-GGGGCTTCCEEECCSS-CCCCC--GGGGGCTTCSEEECCSS-CCCCCGG---GTTCTTCC
T ss_pred CCCEEECCCC-cCCCC--h-hhcCCCCCCEEEccCC-cCCcc--hhhccCCCCCEEEccCC-ccccchh---hcCCCccC
Confidence 6666666665 33321 1 1234566666666663 34433 34555666666666663 3433221 33466666
Q ss_pred EeeccccCCCCHHHHHHHHhhCCCCCEEEeccCCCChhH
Q 007252 504 DLDLKHCAKIDDSGFWALAYYSQNLRQINLSYCALSDMA 542 (611)
Q Consensus 504 ~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~ 542 (611)
.|++++| .+++.. . ...+++|+.|++++|+++..+
T Consensus 182 ~L~L~~N-~i~~l~--~-l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 182 NLYLSKN-HISDLR--A-LAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp EEECCSS-CCCBCG--G-GTTCTTCSEEEEEEEEEECCC
T ss_pred EEECCCC-cCCCCh--h-hccCCCCCEEECcCCcccCCc
Confidence 6666666 554421 1 233466666666666654433
No 93
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.22 E-value=5.1e-12 Score=120.35 Aligned_cols=58 Identities=17% Similarity=0.142 Sum_probs=35.1
Q ss_pred CCCcEEecCCCccCChhHHHHHHhccCCCcEEecCCCCCCChhhhhhhccCCCceEEEecCCCCCCh
Q 007252 346 RGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISD 412 (611)
Q Consensus 346 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 412 (611)
++|++|+++++. ++.. .. ...++|++|++++ +.++.. ..+..+++|+.|+++++ .+++
T Consensus 251 ~~L~~L~Ls~N~-l~~l--p~--~~~~~L~~L~Ls~-N~l~~~--~~~~~l~~L~~L~L~~N-~l~~ 308 (310)
T 4glp_A 251 SALNSLNLSFAG-LEQV--PK--GLPAKLRVLDLSS-NRLNRA--PQPDELPEVDNLTLDGN-PFLV 308 (310)
T ss_dssp TTCCCEECCSSC-CCSC--CS--CCCSCCSCEECCS-CCCCSC--CCTTSCCCCSCEECSST-TTSC
T ss_pred CcCCEEECCCCC-CCch--hh--hhcCCCCEEECCC-CcCCCC--chhhhCCCccEEECcCC-CCCC
Confidence 567777776643 3211 00 0136888888888 566643 22456788888888876 4443
No 94
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.21 E-value=1.8e-12 Score=120.77 Aligned_cols=133 Identities=16% Similarity=0.052 Sum_probs=64.4
Q ss_pred ccCCCcEEecCCCCCCChhhhhhhccCCCceEEEecCCCCCChHhHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhcCc
Q 007252 370 FCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCK 449 (611)
Q Consensus 370 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 449 (611)
.+++|++|++++ +.++......+..+++|++|+++++ .++......+ ..+++|++|++++| .++.... .....++
T Consensus 83 ~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~-~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~ 157 (272)
T 3rfs_A 83 ELTNLTYLILTG-NQLQSLPNGVFDKLTNLKELVLVEN-QLQSLPDGVF-DKLTNLTYLNLAHN-QLQSLPK-GVFDKLT 157 (272)
T ss_dssp TCTTCCEEECTT-SCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTT-TTCTTCCEEECCSS-CCCCCCT-TTTTTCT
T ss_pred CCCCCCEEECCC-CccCccChhHhcCCcCCCEEECCCC-cCCccCHHHh-ccCCCCCEEECCCC-ccCccCH-HHhccCc
Confidence 456666666666 4555444444556666666666665 3332211111 14556666666654 3331111 1113355
Q ss_pred cCceecccccCCCChHHHHHhhCCCCCCEEecCCCccccHHHHHHHHhcCCccCEeecccc
Q 007252 450 KLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHC 510 (611)
Q Consensus 450 ~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c 510 (611)
+|+.|++++| .++......+..+++|+.|++++| .++.... .....+++|+.|++++|
T Consensus 158 ~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 158 NLTELDLSYN-QLQSLPEGVFDKLTQLKDLRLYQN-QLKSVPD-GVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp TCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCT-TTTTTCTTCCEEECCSS
T ss_pred cCCEEECCCC-CcCccCHHHhcCCccCCEEECCCC-cCCccCH-HHHhCCcCCCEEEccCC
Confidence 6666666653 344333333445566666666653 3332111 11233555666666555
No 95
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.17 E-value=1.8e-11 Score=115.06 Aligned_cols=166 Identities=20% Similarity=0.186 Sum_probs=93.7
Q ss_pred cCCCcEEecCCCCCCChhhhhhhccCCCceEEEecCCCCCChHhHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhcCcc
Q 007252 371 CLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKK 450 (611)
Q Consensus 371 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 450 (611)
+++|+.|++++ +.+.+. ..+..+++|+.|+++++ .+++... ...+++|++|+++++ .++.. .. ...+++
T Consensus 45 l~~L~~L~l~~-~~i~~~--~~~~~l~~L~~L~L~~n-~l~~~~~---l~~l~~L~~L~l~~n-~l~~~--~~-l~~l~~ 113 (291)
T 1h6t_A 45 LNSIDQIIANN-SDIKSV--QGIQYLPNVTKLFLNGN-KLTDIKP---LANLKNLGWLFLDEN-KVKDL--SS-LKDLKK 113 (291)
T ss_dssp HHTCCEEECTT-SCCCCC--TTGGGCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSS-CCCCG--GG-GTTCTT
T ss_pred cCcccEEEccC-CCcccC--hhHhcCCCCCEEEccCC-ccCCCcc---cccCCCCCEEECCCC-cCCCC--hh-hccCCC
Confidence 45677777766 344332 33556667777777666 4443222 235667777777765 34321 11 344667
Q ss_pred CceecccccCCCChHHHHHhhCCCCCCEEecCCCccccHHHHHHHHhcCCccCEeeccccCCCCHHHHHHHHhhCCCCCE
Q 007252 451 LKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQNLRQ 530 (611)
Q Consensus 451 L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~ 530 (611)
|++|+++++ .+++. ..+..+++|+.|++++| .++.. .....+++|+.|++++| .+++... ...+++|++
T Consensus 114 L~~L~L~~n-~i~~~--~~l~~l~~L~~L~l~~n-~l~~~---~~l~~l~~L~~L~L~~N-~l~~~~~---l~~l~~L~~ 182 (291)
T 1h6t_A 114 LKSLSLEHN-GISDI--NGLVHLPQLESLYLGNN-KITDI---TVLSRLTKLDTLSLEDN-QISDIVP---LAGLTKLQN 182 (291)
T ss_dssp CCEEECTTS-CCCCC--GGGGGCTTCCEEECCSS-CCCCC---GGGGGCTTCSEEECCSS-CCCCCGG---GTTCTTCCE
T ss_pred CCEEECCCC-cCCCC--hhhcCCCCCCEEEccCC-cCCcc---hhhccCCCCCEEEccCC-ccccchh---hcCCCccCE
Confidence 777777664 44442 34556677777777663 44432 12334667777777777 5544321 334567777
Q ss_pred EEeccCCCChhHHHHHhccccccccceeecc
Q 007252 531 INLSYCALSDMALCMVMGNMTRLQDAKLVHL 561 (611)
Q Consensus 531 L~l~~~~l~~~~~~~~l~~~~~L~~l~l~~~ 561 (611)
|++++|.+++.. .+..+++|+.|++.++
T Consensus 183 L~L~~N~i~~l~---~l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 183 LYLSKNHISDLR---ALAGLKNLDVLELFSQ 210 (291)
T ss_dssp EECCSSCCCBCG---GGTTCTTCSEEEEEEE
T ss_pred EECCCCcCCCCh---hhccCCCCCEEECcCC
Confidence 777777766543 3566666777766655
No 96
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.17 E-value=3.5e-13 Score=123.17 Aligned_cols=179 Identities=8% Similarity=-0.015 Sum_probs=101.2
Q ss_pred ccCCCcEEecCCCCCCChhhhhhhccCCCceEEEecCCCCCChHhHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhcCc
Q 007252 370 FCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCK 449 (611)
Q Consensus 370 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 449 (611)
.+++|++|+++++..++......+..+++|++|++++|..++......+ ..+++|++|+++++ .++. +.. ...++
T Consensus 53 ~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f-~~l~~L~~L~l~~n-~l~~--lp~-~~~l~ 127 (239)
T 2xwt_C 53 NLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDAL-KELPLLKFLGIFNT-GLKM--FPD-LTKVY 127 (239)
T ss_dssp TCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSE-ECCTTCCEEEEEEE-CCCS--CCC-CTTCC
T ss_pred CCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHh-CCCCCCCEEeCCCC-CCcc--ccc-ccccc
Confidence 4567777777762225554444566677777777776334443322222 24667777777765 2322 111 23456
Q ss_pred cCc---eecccccCCCChHHHHHhhCCCCCC-EEecCCCccccHHHHHHHHhcCCccCEeeccccCCCCHHHHHHHHhhC
Q 007252 450 KLK---KLNLSYCVNVTDRGMEHIRFIEDLS-DLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYS 525 (611)
Q Consensus 450 ~L~---~L~l~~c~~l~~~~~~~l~~~~~L~-~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~ 525 (611)
+|+ .|+++++..++......+..+++|+ .|+++++ .++.... .... .++|+.|++++|+.++..... ....+
T Consensus 128 ~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n-~l~~i~~-~~~~-~~~L~~L~L~~n~~l~~i~~~-~~~~l 203 (239)
T 2xwt_C 128 STDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN-GFTSVQG-YAFN-GTKLDAVYLNKNKYLTVIDKD-AFGGV 203 (239)
T ss_dssp BCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC-CCCEECT-TTTT-TCEEEEEECTTCTTCCEECTT-TTTTC
T ss_pred ccccccEEECCCCcchhhcCcccccchhcceeEEEcCCC-CCcccCH-hhcC-CCCCCEEEcCCCCCcccCCHH-Hhhcc
Confidence 666 7777775356655545566777787 8887773 4442111 1112 267888888877435432211 12234
Q ss_pred -CCCCEEEeccCCCChhHHHHHhccccccccceeecc
Q 007252 526 -QNLRQINLSYCALSDMALCMVMGNMTRLQDAKLVHL 561 (611)
Q Consensus 526 -~~L~~L~l~~~~l~~~~~~~~l~~~~~L~~l~l~~~ 561 (611)
++|+.|++++|+++..+. ..+++|+.|.+.++
T Consensus 204 ~~~L~~L~l~~N~l~~l~~----~~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 204 YSGPSLLDVSQTSVTALPS----KGLEHLKELIARNT 236 (239)
T ss_dssp SBCCSEEECTTCCCCCCCC----TTCTTCSEEECTTC
T ss_pred ccCCcEEECCCCccccCCh----hHhccCceeeccCc
Confidence 778888888887765544 24666777766554
No 97
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.16 E-value=2.7e-12 Score=120.49 Aligned_cols=147 Identities=16% Similarity=0.093 Sum_probs=60.4
Q ss_pred CCCCcEEeeccCCCCCC--CCCCCCCcEEecCCCccCChhHHHHHHhccCCCcEEecCCCCCCChhhhhhhccCCCceEE
Q 007252 325 CKSLVEIGLSKCLGVTN--TDSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFL 402 (611)
Q Consensus 325 ~~~L~~L~l~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L 402 (611)
++++++++++++. ++. ....++++.|+++++. +.......+ ..+++|++|++++ +.++.... ...+++|+.|
T Consensus 9 l~~l~~l~~~~~~-l~~ip~~~~~~l~~L~L~~N~-l~~~~~~~~-~~l~~L~~L~L~~-n~l~~~~~--~~~l~~L~~L 82 (290)
T 1p9a_G 9 VASHLEVNCDKRN-LTALPPDLPKDTTILHLSENL-LYTFSLATL-MPYTRLTQLNLDR-AELTKLQV--DGTLPVLGTL 82 (290)
T ss_dssp STTCCEEECTTSC-CSSCCSCCCTTCCEEECTTSC-CSEEEGGGG-TTCTTCCEEECTT-SCCCEEEC--CSCCTTCCEE
T ss_pred cCCccEEECCCCC-CCcCCCCCCCCCCEEEcCCCc-CCccCHHHh-hcCCCCCEEECCC-CccCcccC--CCCCCcCCEE
Confidence 4566666665542 222 1223455555555533 222111111 1445555555555 34433221 1345555555
Q ss_pred EecCCCCCChHhHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhcCccCceecccccCCCChHHHHHhhCCCCCCEEecC
Q 007252 403 KLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELR 482 (611)
Q Consensus 403 ~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~ 482 (611)
+++++ .++.. ......+++|++|+++++ .++.... ..+..+++|++|++++ +.++......+..+++|+.|+++
T Consensus 83 ~Ls~N-~l~~l--~~~~~~l~~L~~L~l~~N-~l~~l~~-~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~ 156 (290)
T 1p9a_G 83 DLSHN-QLQSL--PLLGQTLPALTVLDVSFN-RLTSLPL-GALRGLGELQELYLKG-NELKTLPPGLLTPTPKLEKLSLA 156 (290)
T ss_dssp ECCSS-CCSSC--CCCTTTCTTCCEEECCSS-CCCCCCS-STTTTCTTCCEEECTT-SCCCCCCTTTTTTCTTCCEEECT
T ss_pred ECCCC-cCCcC--chhhccCCCCCEEECCCC-cCcccCH-HHHcCCCCCCEEECCC-CCCCccChhhcccccCCCEEECC
Confidence 55554 22211 001123455555555543 2221100 0112344555555555 23433333333444555555555
Q ss_pred C
Q 007252 483 G 483 (611)
Q Consensus 483 ~ 483 (611)
+
T Consensus 157 ~ 157 (290)
T 1p9a_G 157 N 157 (290)
T ss_dssp T
T ss_pred C
Confidence 4
No 98
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.12 E-value=5.2e-11 Score=122.97 Aligned_cols=176 Identities=20% Similarity=0.186 Sum_probs=111.1
Q ss_pred CCCCCCCcEEecCCCccCChhHHHHHHhccCCCcEEecCCCCCCChhhhhhhccCCCceEEEecCCCCCChHhHHHHHhc
Q 007252 342 TDSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASN 421 (611)
Q Consensus 342 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 421 (611)
...+++|+.|.++++. +.... . ...+++|+.|++++ +.+..... +..+++|+.|++++| .+++.. . ...
T Consensus 39 ~~~L~~L~~L~l~~n~-i~~l~--~-l~~l~~L~~L~Ls~-N~l~~~~~--l~~l~~L~~L~Ls~N-~l~~l~--~-l~~ 107 (605)
T 1m9s_A 39 QNELNSIDQIIANNSD-IKSVQ--G-IQYLPNVTKLFLNG-NKLTDIKP--LTNLKNLGWLFLDEN-KIKDLS--S-LKD 107 (605)
T ss_dssp HHHHTTCCCCBCTTCC-CCCCT--T-GGGCTTCCEEECTT-SCCCCCGG--GGGCTTCCEEECCSS-CCCCCT--T-STT
T ss_pred hhcCCCCCEEECcCCC-CCCCh--H-HccCCCCCEEEeeC-CCCCCChh--hccCCCCCEEECcCC-CCCCCh--h-hcc
Confidence 3445677888887755 32221 2 23678888888888 45554332 677888888888887 444322 2 235
Q ss_pred CCCCcEEeccCCCCCCHHHHHHHHhcCccCceecccccCCCChHHHHHhhCCCCCCEEecCCCccccHHHHHHHHhcCCc
Q 007252 422 CLRIQGLDLYKCSGIGDDGLAALSNGCKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKR 501 (611)
Q Consensus 422 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 501 (611)
+++|+.|++++| .++.. .. ...+++|+.|+|++| .++.. ..+..+++|+.|+|++| .+++... ...+++
T Consensus 108 l~~L~~L~Ls~N-~l~~l--~~-l~~l~~L~~L~Ls~N-~l~~l--~~l~~l~~L~~L~Ls~N-~l~~~~~---l~~l~~ 176 (605)
T 1m9s_A 108 LKKLKSLSLEHN-GISDI--NG-LVHLPQLESLYLGNN-KITDI--TVLSRLTKLDTLSLEDN-QISDIVP---LAGLTK 176 (605)
T ss_dssp CTTCCEEECTTS-CCCCC--GG-GGGCTTCSEEECCSS-CCCCC--GGGGSCTTCSEEECCSS-CCCCCGG---GTTCTT
T ss_pred CCCCCEEEecCC-CCCCC--cc-ccCCCccCEEECCCC-ccCCc--hhhcccCCCCEEECcCC-cCCCchh---hccCCC
Confidence 778888888876 34431 12 345778888888774 45543 45667788888888874 4543222 345778
Q ss_pred cCEeeccccCCCCHHHHHHHHhhCCCCCEEEeccCCCChhHH
Q 007252 502 LADLDLKHCAKIDDSGFWALAYYSQNLRQINLSYCALSDMAL 543 (611)
Q Consensus 502 L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~ 543 (611)
|+.|++++| .+++. .. ...+++|+.|++++|+++..+.
T Consensus 177 L~~L~Ls~N-~i~~l--~~-l~~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 177 LQNLYLSKN-HISDL--RA-LAGLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp CCEEECCSS-CCCBC--GG-GTTCTTCSEEECCSEEEECCCC
T ss_pred CCEEECcCC-CCCCC--hH-HccCCCCCEEEccCCcCcCCcc
Confidence 888888888 66553 22 3345788888888887665544
No 99
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.11 E-value=1.8e-10 Score=101.37 Aligned_cols=61 Identities=20% Similarity=0.203 Sum_probs=29.6
Q ss_pred ccCCCcEEecCCCCCCChhhhhhhccCCCceEEEecCCCCCChHhHHHHHhcCCCCcEEeccCC
Q 007252 370 FCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKC 433 (611)
Q Consensus 370 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 433 (611)
.+++|++|++++ +.+++.....+..+++|+.|+++++ .+++.....+. .+++|++|++++|
T Consensus 86 ~l~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~Ls~n-~i~~~~~~~l~-~l~~L~~L~L~~n 146 (197)
T 4ezg_A 86 GLSNLERLRIMG-KDVTSDKIPNLSGLTSLTLLDISHS-AHDDSILTKIN-TLPKVNSIDLSYN 146 (197)
T ss_dssp TCTTCCEEEEEC-TTCBGGGSCCCTTCTTCCEEECCSS-BCBGGGHHHHT-TCSSCCEEECCSC
T ss_pred cCCCCCEEEeEC-CccCcccChhhcCCCCCCEEEecCC-ccCcHhHHHHh-hCCCCCEEEccCC
Confidence 345555555555 4454444444455555555555554 44433333332 3455555555544
No 100
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.10 E-value=3e-12 Score=116.92 Aligned_cols=32 Identities=9% Similarity=0.003 Sum_probs=14.1
Q ss_pred CccCEeeccccCCCCHHHHHHHHhhCCCCCEEEeccC
Q 007252 500 KRLADLDLKHCAKIDDSGFWALAYYSQNLRQINLSYC 536 (611)
Q Consensus 500 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~~ 536 (611)
++|+.|++++| .++..... .+++|+.|+++++
T Consensus 205 ~~L~~L~l~~N-~l~~l~~~----~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 205 SGPSLLDVSQT-SVTALPSK----GLEHLKELIARNT 236 (239)
T ss_dssp BCCSEEECTTC-CCCCCCCT----TCTTCSEEECTTC
T ss_pred cCCcEEECCCC-ccccCChh----HhccCceeeccCc
Confidence 45555555555 33321111 2355555555544
No 101
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.08 E-value=3.1e-11 Score=113.31 Aligned_cols=170 Identities=18% Similarity=0.094 Sum_probs=73.7
Q ss_pred cCCCccEEEccCcccChHHHHHHHHhCCCCcEEeeccCCCCCC----CCCCCCCcEEecCCCccCChhHHHHHHhccCCC
Q 007252 299 DLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTN----TDSCRGLVCLKIESCNMITEKGLYQLGSFCLRL 374 (611)
Q Consensus 299 ~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 374 (611)
.+++++++++.++.+..... ...++++.|+++++..... +..+++|+.|+++++. ++..... ..+++|
T Consensus 8 ~l~~l~~l~~~~~~l~~ip~----~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~---~~l~~L 79 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTALPP----DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQVD---GTLPVL 79 (290)
T ss_dssp CSTTCCEEECTTSCCSSCCS----CCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEECC---SCCTTC
T ss_pred ccCCccEEECCCCCCCcCCC----CCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc-cCcccCC---CCCCcC
Confidence 34555555555554432110 0124555565555432111 4455556666665533 2221110 244556
Q ss_pred cEEecCCCCCCChhhhhhhccCCCceEEEecCCCCCChHhHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhcCccCcee
Q 007252 375 EEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKKLKKL 454 (611)
Q Consensus 375 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 454 (611)
+.|++++ +.++.. ...+..+++|+.|+++++ .++......+ ..+++|++|+++++ .++.... .....+++|+.|
T Consensus 80 ~~L~Ls~-N~l~~l-~~~~~~l~~L~~L~l~~N-~l~~l~~~~~-~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L 153 (290)
T 1p9a_G 80 GTLDLSH-NQLQSL-PLLGQTLPALTVLDVSFN-RLTSLPLGAL-RGLGELQELYLKGN-ELKTLPP-GLLTPTPKLEKL 153 (290)
T ss_dssp CEEECCS-SCCSSC-CCCTTTCTTCCEEECCSS-CCCCCCSSTT-TTCTTCCEEECTTS-CCCCCCT-TTTTTCTTCCEE
T ss_pred CEEECCC-CcCCcC-chhhccCCCCCEEECCCC-cCcccCHHHH-cCCCCCCEEECCCC-CCCccCh-hhcccccCCCEE
Confidence 6666655 344321 122344555666666554 3332211111 13455666666554 2321111 111234556666
Q ss_pred cccccCCCChHHHHHhhCCCCCCEEecCC
Q 007252 455 NLSYCVNVTDRGMEHIRFIEDLSDLELRG 483 (611)
Q Consensus 455 ~l~~c~~l~~~~~~~l~~~~~L~~L~l~~ 483 (611)
++++ +.++......+..+++|+.|++++
T Consensus 154 ~L~~-N~l~~l~~~~~~~l~~L~~L~L~~ 181 (290)
T 1p9a_G 154 SLAN-NNLTELPAGLLNGLENLDTLLLQE 181 (290)
T ss_dssp ECTT-SCCSCCCTTTTTTCTTCCEEECCS
T ss_pred ECCC-CcCCccCHHHhcCcCCCCEEECCC
Confidence 6655 234433333334455555555554
No 102
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.07 E-value=6e-11 Score=122.54 Aligned_cols=165 Identities=22% Similarity=0.125 Sum_probs=100.1
Q ss_pred hCCCCcEEeeccCCCC--CCCCCCCCCcEEecCCCccCChhHHHHHHhccCCCcEEecCCCCCCChhhhhhhccCCCceE
Q 007252 324 NCKSLVEIGLSKCLGV--TNTDSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLF 401 (611)
Q Consensus 324 ~~~~L~~L~l~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~ 401 (611)
.+++|+.|+++++... ..+..+++|+.|+++++. +..... ...+++|+.|++++ +.+.. +..+..+++|+.
T Consensus 41 ~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~-l~~~~~---l~~l~~L~~L~Ls~-N~l~~--l~~l~~l~~L~~ 113 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNK-LTDIKP---LTNLKNLGWLFLDE-NKIKD--LSSLKDLKKLKS 113 (605)
T ss_dssp HHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSC-CCCCGG---GGGCTTCCEEECCS-SCCCC--CTTSTTCTTCCE
T ss_pred cCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCC-CCCChh---hccCCCCCEEECcC-CCCCC--ChhhccCCCCCE
Confidence 4566777777766321 125667777777777754 322211 33677777777777 45544 235667777777
Q ss_pred EEecCCCCCChHhHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhcCccCceecccccCCCChHHHHHhhCCCCCCEEec
Q 007252 402 LKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLEL 481 (611)
Q Consensus 402 L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l 481 (611)
|+++++ .+++. .. ...+++|+.|++++| .++.. .....+++|+.|+|++| .++.... +..+++|+.|+|
T Consensus 114 L~Ls~N-~l~~l--~~-l~~l~~L~~L~Ls~N-~l~~l---~~l~~l~~L~~L~Ls~N-~l~~~~~--l~~l~~L~~L~L 182 (605)
T 1m9s_A 114 LSLEHN-GISDI--NG-LVHLPQLESLYLGNN-KITDI---TVLSRLTKLDTLSLEDN-QISDIVP--LAGLTKLQNLYL 182 (605)
T ss_dssp EECTTS-CCCCC--GG-GGGCTTCSEEECCSS-CCCCC---GGGGSCTTCSEEECCSS-CCCCCGG--GTTCTTCCEEEC
T ss_pred EEecCC-CCCCC--cc-ccCCCccCEEECCCC-ccCCc---hhhcccCCCCEEECcCC-cCCCchh--hccCCCCCEEEC
Confidence 777776 44432 12 225677777777776 44432 22345677777777774 4554332 667777778877
Q ss_pred CCCccccHHHHHHHHhcCCccCEeecccc
Q 007252 482 RGLTKITSAGLTALAAGCKRLADLDLKHC 510 (611)
Q Consensus 482 ~~c~~l~~~~~~~~~~~~~~L~~L~l~~c 510 (611)
++| .+++. .. ...+++|+.|++++|
T Consensus 183 s~N-~i~~l--~~-l~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 183 SKN-HISDL--RA-LAGLKNLDVLELFSQ 207 (605)
T ss_dssp CSS-CCCBC--GG-GTTCTTCSEEECCSE
T ss_pred cCC-CCCCC--hH-HccCCCCCEEEccCC
Confidence 774 45442 11 345777777777777
No 103
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.04 E-value=1.1e-09 Score=104.98 Aligned_cols=73 Identities=19% Similarity=0.178 Sum_probs=42.1
Q ss_pred CCCCCEEecCCCccccHHHHHHHHh--cCCccCEeeccccCCCCHHHHHHHHh---hCCCCCEEEeccCCCChhHHHHHh
Q 007252 473 IEDLSDLELRGLTKITSAGLTALAA--GCKRLADLDLKHCAKIDDSGFWALAY---YSQNLRQINLSYCALSDMALCMVM 547 (611)
Q Consensus 473 ~~~L~~L~l~~c~~l~~~~~~~~~~--~~~~L~~L~l~~c~~l~~~~~~~~~~---~~~~L~~L~l~~~~l~~~~~~~~l 547 (611)
+|+|+.|.+.+| .+.+.....++. .+++|+.|+++.| .+++.+...+.. .+++|+.|++++|.+++.+. .++
T Consensus 251 ~p~Lr~L~L~~~-~i~~~~~~~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~-~~l 327 (362)
T 2ra8_A 251 FPNLKWLGIVDA-EEQNVVVEMFLESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMK-KEL 327 (362)
T ss_dssp CTTCCEEEEESC-TTHHHHHHHHHHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHH-HHH
T ss_pred CCCcCEEeCCCC-CCchHHHHHHHhCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCCcCCHHHH-HHH
Confidence 566666666663 344433333332 3566777777666 666665555442 24667777777666666666 444
Q ss_pred c
Q 007252 548 G 548 (611)
Q Consensus 548 ~ 548 (611)
.
T Consensus 328 ~ 328 (362)
T 2ra8_A 328 Q 328 (362)
T ss_dssp H
T ss_pred H
Confidence 4
No 104
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.04 E-value=1.6e-09 Score=104.04 Aligned_cols=163 Identities=16% Similarity=0.105 Sum_probs=78.8
Q ss_pred HHHHhccCCCcEEecCCCCCCChhhhhhhccCCCceEEEecCCCCCChHhHHHHHh-cCCCCcEEeccCCCC--CCH---
Q 007252 365 YQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIAS-NCLRIQGLDLYKCSG--IGD--- 438 (611)
Q Consensus 365 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~-~~~~L~~L~l~~~~~--~~~--- 438 (611)
..+...+|+|++|.+.++..+. +..+ .+++|++|.+..| .+++..+..++. .+|+|++|+++.+.. ..+
T Consensus 165 ~~ll~~~P~L~~L~L~g~~~l~---l~~~-~~~~L~~L~L~~~-~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~ 239 (362)
T 2ra8_A 165 SPVLDAMPLLNNLKIKGTNNLS---IGKK-PRPNLKSLEIISG-GLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDM 239 (362)
T ss_dssp HHHHHTCTTCCEEEEECCBTCB---CCSC-BCTTCSEEEEECS-BCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCG
T ss_pred HHHHhcCCCCcEEEEeCCCCce---eccc-cCCCCcEEEEecC-CCChHHHHHHHHccCCCCcEEEEeccccccccchhH
Confidence 3444455666666665531111 1111 2556666666654 455555555542 456666666542100 000
Q ss_pred HHHHHHH--hcCccCceecccccCCCChHHHHHhh---CCCCCCEEecCCCccccHHHHHHHHh---cCCccCEeecccc
Q 007252 439 DGLAALS--NGCKKLKKLNLSYCVNVTDRGMEHIR---FIEDLSDLELRGLTKITSAGLTALAA---GCKRLADLDLKHC 510 (611)
Q Consensus 439 ~~~~~~~--~~~~~L~~L~l~~c~~l~~~~~~~l~---~~~~L~~L~l~~c~~l~~~~~~~~~~---~~~~L~~L~l~~c 510 (611)
..+..+. ..+|+|+.|++.+| .+++.....+. .+|+|++|+|+. +.+++.+...+.. .+++|+.|++++|
T Consensus 240 ~~l~~~l~~~~~p~Lr~L~L~~~-~i~~~~~~~la~a~~~~~L~~LdLs~-n~L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 240 NVFRPLFSKDRFPNLKWLGIVDA-EEQNVVVEMFLESDILPQLETMDISA-GVLTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp GGTGGGSCTTTCTTCCEEEEESC-TTHHHHHHHHHHCSSGGGCSEEECCS-SCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred HHHHHHHhcCCCCCcCEEeCCCC-CCchHHHHHHHhCccCCCCCEEECCC-CCCChHHHHHHHhhcccCCcceEEECCCC
Confidence 0111111 13566666666554 34443333332 355666666654 4565555444432 3456666666666
Q ss_pred CCCCHHHHHHHHhhCCCCCEEEeccCC
Q 007252 511 AKIDDSGFWALAYYSQNLRQINLSYCA 537 (611)
Q Consensus 511 ~~l~~~~~~~~~~~~~~L~~L~l~~~~ 537 (611)
.+++.+...+...+ ...++++.++
T Consensus 318 -~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 318 -YLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp -BCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred -cCCHHHHHHHHHHc--CCEEEecCCc
Confidence 56666665555542 3445555554
No 105
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.01 E-value=2.6e-11 Score=111.52 Aligned_cols=158 Identities=16% Similarity=0.122 Sum_probs=90.7
Q ss_pred CCCcEEecCCCCCCChhhhhhhccCCCceEEEecCCCCCChHhHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhcCccC
Q 007252 372 LRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKKL 451 (611)
Q Consensus 372 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 451 (611)
++++.|++++ +.++......+..+++|++|+++++ .++......+ ..+++|++|+++++ .++.... .....+++|
T Consensus 35 ~~l~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~-~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L 109 (251)
T 3m19_A 35 ADTEKLDLQS-TGLATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVF-DDLTELGTLGLANN-QLASLPL-GVFDHLTQL 109 (251)
T ss_dssp TTCCEEECTT-SCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTT-TTCTTCCEEECTTS-CCCCCCT-TTTTTCTTC
T ss_pred CCCCEEEccC-CCcCccCHhHhcCcccCCEEECCCC-cCCccCHhHh-ccCCcCCEEECCCC-cccccCh-hHhcccCCC
Confidence 4788888887 5666665566777788888888776 4443222222 25677777777775 3432111 122346777
Q ss_pred ceecccccCCCChHHHHHhhCCCCCCEEecCCCccccHHHHHHHHhcCCccCEeeccccCCCCHHHHHHHHhhCCCCCEE
Q 007252 452 KKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQNLRQI 531 (611)
Q Consensus 452 ~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L 531 (611)
++|++++ +.++......+..+++|+.|+++++ .++.... .....+++|+.|++++| .++...... ...+++|+.|
T Consensus 110 ~~L~L~~-N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L 184 (251)
T 3m19_A 110 DKLYLGG-NQLKSLPSGVFDRLTKLKELRLNTN-QLQSIPA-GAFDKLTNLQTLSLSTN-QLQSVPHGA-FDRLGKLQTI 184 (251)
T ss_dssp CEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-CCSCCCTTT-TTTCTTCCEE
T ss_pred CEEEcCC-CcCCCcChhHhccCCcccEEECcCC-cCCccCH-HHcCcCcCCCEEECCCC-cCCccCHHH-HhCCCCCCEE
Confidence 7777777 3555444444556677777777763 4442211 11234567777777776 554322111 2234667777
Q ss_pred EeccCCCC
Q 007252 532 NLSYCALS 539 (611)
Q Consensus 532 ~l~~~~l~ 539 (611)
++++|+++
T Consensus 185 ~l~~N~~~ 192 (251)
T 3m19_A 185 TLFGNQFD 192 (251)
T ss_dssp ECCSCCBC
T ss_pred EeeCCcee
Confidence 77777654
No 106
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.01 E-value=4.9e-11 Score=109.63 Aligned_cols=155 Identities=15% Similarity=0.051 Sum_probs=76.3
Q ss_pred CCCcEEecCCCccCChhHHHHHHhccCCCcEEecCCCCCCChhhhhhhccCCCceEEEecCCCCCChHhHHHHHhcCCCC
Q 007252 346 RGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRI 425 (611)
Q Consensus 346 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 425 (611)
++++.|+++++. +....... ...+++|++|++++ +.++......+..+++|++|+++++ .++......+ ..+++|
T Consensus 35 ~~l~~L~L~~n~-l~~~~~~~-~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~-~~l~~L 109 (251)
T 3m19_A 35 ADTEKLDLQSTG-LATLSDAT-FRGLTKLTWLNLDY-NQLQTLSAGVFDDLTELGTLGLANN-QLASLPLGVF-DHLTQL 109 (251)
T ss_dssp TTCCEEECTTSC-CCCCCTTT-TTTCTTCCEEECTT-SCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTT-TTCTTC
T ss_pred CCCCEEEccCCC-cCccCHhH-hcCcccCCEEECCC-CcCCccCHhHhccCCcCCEEECCCC-cccccChhHh-cccCCC
Confidence 456666666543 22211111 12456666666666 4555544444556666666666665 3332221111 245666
Q ss_pred cEEeccCCCCCCHHHHHHHHhcCccCceecccccCCCChHHHHHhhCCCCCCEEecCCCccccHHHHHHHHhcCCccCEe
Q 007252 426 QGLDLYKCSGIGDDGLAALSNGCKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADL 505 (611)
Q Consensus 426 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L 505 (611)
++|+++++ .++.... .....+++|++|++++ +.++......+..+++|+.|+++++ .++.... .....+++|+.|
T Consensus 110 ~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L 184 (251)
T 3m19_A 110 DKLYLGGN-QLKSLPS-GVFDRLTKLKELRLNT-NQLQSIPAGAFDKLTNLQTLSLSTN-QLQSVPH-GAFDRLGKLQTI 184 (251)
T ss_dssp CEEECCSS-CCCCCCT-TTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCT-TTTTTCTTCCEE
T ss_pred CEEEcCCC-cCCCcCh-hHhccCCcccEEECcC-CcCCccCHHHcCcCcCCCEEECCCC-cCCccCH-HHHhCCCCCCEE
Confidence 66666664 3331111 1113356666666666 3455444444555666666666663 3432211 112345666666
Q ss_pred ecccc
Q 007252 506 DLKHC 510 (611)
Q Consensus 506 ~l~~c 510 (611)
++++|
T Consensus 185 ~l~~N 189 (251)
T 3m19_A 185 TLFGN 189 (251)
T ss_dssp ECCSC
T ss_pred EeeCC
Confidence 66666
No 107
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.00 E-value=9.9e-11 Score=97.91 Aligned_cols=130 Identities=21% Similarity=0.265 Sum_probs=68.1
Q ss_pred CCCCcEEeccCCCCCCHHHHHHHHhcCccCceecccccCCCChHHHHHhhCCCCCCEEecCCCccccHHHHHHHHhcCCc
Q 007252 422 CLRIQGLDLYKCSGIGDDGLAALSNGCKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKR 501 (611)
Q Consensus 422 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 501 (611)
.++|+.|++++| .+++..+......+++|+.|++++| .++.. ..+..+++|+.|++++| .++.. +......+++
T Consensus 16 ~~~l~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~--~~~~~l~~L~~L~Ls~n-~i~~~-~~~~~~~l~~ 89 (149)
T 2je0_A 16 PSDVKELVLDNS-RSNEGKLEGLTDEFEELEFLSTINV-GLTSI--ANLPKLNKLKKLELSDN-RVSGG-LEVLAEKCPN 89 (149)
T ss_dssp GGGCSEEECTTC-BCBTTBCCSCCTTCTTCCEEECTTS-CCCCC--TTCCCCTTCCEEECCSS-CCCSC-THHHHHHCTT
T ss_pred CccCeEEEccCC-cCChhHHHHHHhhcCCCcEEECcCC-CCCCc--hhhhcCCCCCEEECCCC-cccch-HHHHhhhCCC
Confidence 355666666665 2331122222234566666666664 44443 44556667777777663 34331 2223334667
Q ss_pred cCEeeccccCCCCHHHHHHHHhhCCCCCEEEeccCCCChhHH--HHHhcccccccccee
Q 007252 502 LADLDLKHCAKIDDSGFWALAYYSQNLRQINLSYCALSDMAL--CMVMGNMTRLQDAKL 558 (611)
Q Consensus 502 L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--~~~l~~~~~L~~l~l 558 (611)
|+.|++++| .+++.........+++|++|++++|++++... ...+..+++|+.|++
T Consensus 90 L~~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 90 LTHLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp CCEEECTTS-CCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred CCEEECCCC-cCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 777777776 55553322333445677777777776544321 023455666666554
No 108
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.97 E-value=1.4e-10 Score=111.34 Aligned_cols=125 Identities=18% Similarity=0.182 Sum_probs=76.1
Q ss_pred CCCcEEecCCCccCChhHHHHHHhccCCCcEEecCCCCCCChhhhhhhccCCCceEEEecCCCCCChHhHHHHHhcCCCC
Q 007252 346 RGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRI 425 (611)
Q Consensus 346 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 425 (611)
.+++.+.+.+ .+....+..+...|++|+.+++++ +.++..+-..+..|++|+.+.+..+ +...+-..+. .|++|
T Consensus 202 ~~~~~l~~~~--~l~~~~~~~l~~~~~~L~~l~L~~-n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~-~~~~L 275 (329)
T 3sb4_A 202 RDINFLTIEG--KLDNADFKLIRDYMPNLVSLDISK-TNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFS-NCGRL 275 (329)
T ss_dssp GGCSEEEEEE--CCCHHHHHHHHHHCTTCCEEECTT-BCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTT-TCTTC
T ss_pred cccceEEEee--eecHHHHHHHHHhcCCCeEEECCC-CCcceecHhhhhCCCCCCEEECCcc--cceehHHHhh-CChhc
Confidence 3444454443 244555666666688999999987 5677766677788888888888763 4433333333 56777
Q ss_pred c-EEeccCCCCCCHHHHHHHHhcCccCceecccccCCCChHHHHHhhCCCCCCEEe
Q 007252 426 Q-GLDLYKCSGIGDDGLAALSNGCKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLE 480 (611)
Q Consensus 426 ~-~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~ 480 (611)
+ .+++.+ .++..+-.. +.+|++|+.|+++. +.++..+...+.++++|+.++
T Consensus 276 ~~~l~l~~--~l~~I~~~a-F~~c~~L~~l~l~~-n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 276 AGTLELPA--SVTAIEFGA-FMGCDNLRYVLATG-DKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp CEEEEECT--TCCEECTTT-TTTCTTEEEEEECS-SCCCEECTTTTCTTCCCCEEE
T ss_pred cEEEEEcc--cceEEchhh-hhCCccCCEEEeCC-CccCccchhhhcCCcchhhhc
Confidence 7 777765 333221111 23567777777755 455555555566667776665
No 109
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.95 E-value=1.1e-08 Score=88.51 Aligned_cols=121 Identities=15% Similarity=0.161 Sum_probs=65.7
Q ss_pred HhcCCCCcEEeccCCCCCCHHHHHHHHh---cCccCceecccccCCCChHHHHHhh----CCCCCCEEecCCCccccHHH
Q 007252 419 ASNCLRIQGLDLYKCSGIGDDGLAALSN---GCKKLKKLNLSYCVNVTDRGMEHIR----FIEDLSDLELRGLTKITSAG 491 (611)
Q Consensus 419 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~~~L~~L~l~~c~~l~~~~~~~l~----~~~~L~~L~l~~c~~l~~~~ 491 (611)
....++|++|++++|..+++.++..++. ..++|++|+|++| .+++.+...+. ..++|++|++++ +.+++.+
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~-N~i~~~g 109 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVES-NFISGSG 109 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCS-SCCCHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcC-CcCCHHH
Confidence 3345666666666544556555554432 2355666666663 45555544332 345666666665 3565555
Q ss_pred HHHHHh---cCCccCEeec--cccCCCCHHHHHHHHhh---CCCCCEEEeccCCCChhH
Q 007252 492 LTALAA---GCKRLADLDL--KHCAKIDDSGFWALAYY---SQNLRQINLSYCALSDMA 542 (611)
Q Consensus 492 ~~~~~~---~~~~L~~L~l--~~c~~l~~~~~~~~~~~---~~~L~~L~l~~~~l~~~~ 542 (611)
...++. ..++|++|++ ++| .+++.+...++.. .++|++|++++|.+++.+
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~~ 167 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPRL 167 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHHH
T ss_pred HHHHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccCCCCChHH
Confidence 444443 2456666666 556 6666654444332 356666666666665544
No 110
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.90 E-value=1.1e-10 Score=99.99 Aligned_cols=134 Identities=19% Similarity=0.215 Sum_probs=75.4
Q ss_pred CCCCcEEeccCCCCCCHHHHHHHHhcCccCceecccccCCCChHHHHHhhCCCCCCEEecCCCccccHHHHHHHHhcCCc
Q 007252 422 CLRIQGLDLYKCSGIGDDGLAALSNGCKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKR 501 (611)
Q Consensus 422 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 501 (611)
.++|++|++++| .+++..+......+++|+.|++++| .++.. ..+..+++|+.|++++| .++.. +......+++
T Consensus 23 ~~~L~~L~l~~n-~l~~~~i~~~~~~l~~L~~L~l~~n-~l~~~--~~~~~l~~L~~L~Ls~N-~l~~~-~~~~~~~l~~ 96 (168)
T 2ell_A 23 PAAVRELVLDNC-KSNDGKIEGLTAEFVNLEFLSLINV-GLISV--SNLPKLPKLKKLELSEN-RIFGG-LDMLAEKLPN 96 (168)
T ss_dssp TTSCSEEECCSC-BCBTTBCSSCCGGGGGCCEEEEESS-CCCCC--SSCCCCSSCCEEEEESC-CCCSC-CCHHHHHCTT
T ss_pred cccCCEEECCCC-CCChhhHHHHHHhCCCCCEEeCcCC-CCCCh--hhhccCCCCCEEECcCC-cCchH-HHHHHhhCCC
Confidence 356666666665 2332122222234567777777774 35543 44556777777777774 34332 2233445777
Q ss_pred cCEeeccccCCCCHHHHHHHHhhCCCCCEEEeccCCCChhHH--HHHhccccccccceeeccc
Q 007252 502 LADLDLKHCAKIDDSGFWALAYYSQNLRQINLSYCALSDMAL--CMVMGNMTRLQDAKLVHLT 562 (611)
Q Consensus 502 L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--~~~l~~~~~L~~l~l~~~~ 562 (611)
|+.|++++| .+++.........+++|+.|++++|+++.... ...+..+++|+.|++.+|.
T Consensus 97 L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 97 LTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp CCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred CCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 777777777 66543211222345777777777777554331 0245667777777776664
No 111
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.90 E-value=3.8e-10 Score=108.30 Aligned_cols=261 Identities=16% Similarity=0.124 Sum_probs=131.9
Q ss_pred CCCCceeccCCCCCccchhHHHHhhc-CCCccEEEccCcccC--hHHHHHHHHhCCCCcEEeeccCCCCCC--CCC----
Q 007252 274 HSGLLQLDAGHCFSELSTTLLHHMRD-LKNLEAITMDGARIS--DSCFQTISFNCKSLVEIGLSKCLGVTN--TDS---- 344 (611)
Q Consensus 274 ~~~L~~L~l~~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~--~~~l~~~~~~~~~L~~L~l~~~~~~~~--~~~---- 344 (611)
.+++++|.+.+. +.......+.. +++|+.|+++++.+. ..... ..+.+..+..... .+.+ +..
T Consensus 24 ~~~l~~L~l~g~---i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~----~~~~~~~~~~~~~-~I~~~aF~~~~~~ 95 (329)
T 3sb4_A 24 ANSITHLTLTGK---LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAG----TYPNGKFYIYMAN-FVPAYAFSNVVNG 95 (329)
T ss_dssp HHHCSEEEEEEE---ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSS----SSGGGCCEEECTT-EECTTTTEEEETT
T ss_pred hCceeEEEEecc---ccHHHHHHHHHhhccCeEEecCcceeEEecCccc----ccccccccccccc-ccCHHHhcccccc
Confidence 357888888765 45555566666 788999999888765 11000 0111111111111 1111 444
Q ss_pred ----CCCCcEEecCCCccCChhHHHHHHhccCCCcEEecCCCCCCChhhhhhhccCCCceEEEecC--------------
Q 007252 345 ----CRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGL-------------- 406 (611)
Q Consensus 345 ----~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~-------------- 406 (611)
|++|+++++.. .+...+-..+ ..|++|+.+++.. +.+...+...+..+.++..+....
T Consensus 96 ~~~g~~~L~~l~L~~--~i~~I~~~aF-~~~~~L~~l~l~~-n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~ 171 (329)
T 3sb4_A 96 VTKGKQTLEKVILSE--KIKNIEDAAF-KGCDNLKICQIRK-KTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFA 171 (329)
T ss_dssp EEEECTTCCC-CBCT--TCCEECTTTT-TTCTTCCEEEBCC-SSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSC
T ss_pred cccccCCCcEEECCc--cccchhHHHh-hcCcccceEEcCC-CCccccchhhhcCCCceEEecCcchhhhhccccccccc
Confidence 66777776664 2322222222 2566777777766 444443334444444444443322
Q ss_pred ---------------CCCCChHhHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhcCccCceecccccCCCChHHHHHhh
Q 007252 407 ---------------CENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKKLKKLNLSYCVNVTDRGMEHIR 471 (611)
Q Consensus 407 ---------------~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~ 471 (611)
...+.. .+........+++.+.+.+ .+....+..+...|++|+.|++++ +.++..+...+.
T Consensus 172 f~~~~~L~~~i~~~~~~~l~~-~~~~~~~~~~~~~~l~~~~--~l~~~~~~~l~~~~~~L~~l~L~~-n~i~~I~~~aF~ 247 (329)
T 3sb4_A 172 FIEGEPLETTIQVGAMGKLED-EIMKAGLQPRDINFLTIEG--KLDNADFKLIRDYMPNLVSLDISK-TNATTIPDFTFA 247 (329)
T ss_dssp EEESCCCEEEEEECTTCCHHH-HHHHTTCCGGGCSEEEEEE--CCCHHHHHHHHHHCTTCCEEECTT-BCCCEECTTTTT
T ss_pred cccccccceeEEecCCCcHHH-HHhhcccCccccceEEEee--eecHHHHHHHHHhcCCCeEEECCC-CCcceecHhhhh
Confidence 111100 0000011234555555554 345555555555577777777776 346555555666
Q ss_pred CCCCCCEEecCCCccccHHHHHHHHhcCCccC-EeeccccCCCCHHHHHHHHhhCCCCCEEEeccCCCChhHHHHHhccc
Q 007252 472 FIEDLSDLELRGLTKITSAGLTALAAGCKRLA-DLDLKHCAKIDDSGFWALAYYSQNLRQINLSYCALSDMALCMVMGNM 550 (611)
Q Consensus 472 ~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~-~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~l~~~ 550 (611)
++++|+.+++.+. ++..+- ..+.+|++|+ .+++.+ .++..+-. ....|++|+.++++++.++..+. .+|..+
T Consensus 248 ~~~~L~~l~l~~n--i~~I~~-~aF~~~~~L~~~l~l~~--~l~~I~~~-aF~~c~~L~~l~l~~n~i~~I~~-~aF~~~ 320 (329)
T 3sb4_A 248 QKKYLLKIKLPHN--LKTIGQ-RVFSNCGRLAGTLELPA--SVTAIEFG-AFMGCDNLRYVLATGDKITTLGD-ELFGNG 320 (329)
T ss_dssp TCTTCCEEECCTT--CCEECT-TTTTTCTTCCEEEEECT--TCCEECTT-TTTTCTTEEEEEECSSCCCEECT-TTTCTT
T ss_pred CCCCCCEEECCcc--cceehH-HHhhCChhccEEEEEcc--cceEEchh-hhhCCccCCEEEeCCCccCccch-hhhcCC
Confidence 6777777777652 332111 1234566777 777665 23222111 12235677777776666666655 566666
Q ss_pred cccccce
Q 007252 551 TRLQDAK 557 (611)
Q Consensus 551 ~~L~~l~ 557 (611)
++|+.++
T Consensus 321 ~~L~~ly 327 (329)
T 3sb4_A 321 VPSKLIY 327 (329)
T ss_dssp CCCCEEE
T ss_pred cchhhhc
Confidence 6666654
No 112
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.90 E-value=2.5e-08 Score=86.20 Aligned_cols=127 Identities=17% Similarity=0.140 Sum_probs=99.4
Q ss_pred HHHHHHHhcCccCceecccccCCCChHHHHHhh----CCCCCCEEecCCCccccHHHHHHHHh---cCCccCEeeccccC
Q 007252 439 DGLAALSNGCKKLKKLNLSYCVNVTDRGMEHIR----FIEDLSDLELRGLTKITSAGLTALAA---GCKRLADLDLKHCA 511 (611)
Q Consensus 439 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~----~~~~L~~L~l~~c~~l~~~~~~~~~~---~~~~L~~L~l~~c~ 511 (611)
+.+......+++|++|+|++|..+++.+...+. ..++|++|++++| .+++.+...+.. ..++|++|++++|
T Consensus 26 ~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N- 103 (185)
T 1io0_A 26 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESN- 103 (185)
T ss_dssp HHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSS-
T ss_pred HHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCC-
Confidence 456666777899999999996589988876654 5789999999994 688877655543 4689999999999
Q ss_pred CCCHHHHHHHHhh---CCCCCEEEe--ccCCCChhHHH---HHhccccccccceeecccCCCHHH
Q 007252 512 KIDDSGFWALAYY---SQNLRQINL--SYCALSDMALC---MVMGNMTRLQDAKLVHLTNCTREG 568 (611)
Q Consensus 512 ~l~~~~~~~~~~~---~~~L~~L~l--~~~~l~~~~~~---~~l~~~~~L~~l~l~~~~~~~~~~ 568 (611)
.+++.+...++.. .++|++|++ ++|.+++.+.. .++...++|++|++.++ .+...+
T Consensus 104 ~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n-~i~~~~ 167 (185)
T 1io0_A 104 FISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT-QQGPRL 167 (185)
T ss_dssp CCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS-SHHHHH
T ss_pred cCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC-CCChHH
Confidence 9999998877755 468999999 88999998852 44455688999998776 344443
No 113
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.88 E-value=2.8e-10 Score=105.09 Aligned_cols=149 Identities=16% Similarity=0.172 Sum_probs=87.0
Q ss_pred ccCCCcEEecCCCCCCChhhhhhhccCCCceEEEecCCCCCChHhHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhcCc
Q 007252 370 FCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCK 449 (611)
Q Consensus 370 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 449 (611)
.+++|+.|++++ +.+++. ..+..+++|+.|+++++ .+++... ...+++|++|+++++ .++. +..+ .. +
T Consensus 39 ~l~~L~~L~l~~-n~i~~l--~~l~~l~~L~~L~L~~N-~i~~~~~---l~~l~~L~~L~L~~N-~l~~--l~~~-~~-~ 106 (263)
T 1xeu_A 39 ELSGVQNFNGDN-SNIQSL--AGMQFFTNLKELHLSHN-QISDLSP---LKDLTKLEELSVNRN-RLKN--LNGI-PS-A 106 (263)
T ss_dssp HHTTCSEEECTT-SCCCCC--TTGGGCTTCCEEECCSS-CCCCCGG---GTTCSSCCEEECCSS-CCSC--CTTC-CC-S
T ss_pred hcCcCcEEECcC-CCcccc--hHHhhCCCCCEEECCCC-ccCCChh---hccCCCCCEEECCCC-ccCC--cCcc-cc-C
Confidence 456777777777 455543 25666777777777776 4444322 336677777777775 3332 1111 11 6
Q ss_pred cCceecccccCCCChHHHHHhhCCCCCCEEecCCCccccHHHHHHHHhcCCccCEeeccccCCCCHHHHHHHHhhCCCCC
Q 007252 450 KLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQNLR 529 (611)
Q Consensus 450 ~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~ 529 (611)
+|+.|+++++ .++.. ..+..+++|+.|+++++ .+++.. ....+++|+.|++++| .+++. .....+++|+
T Consensus 107 ~L~~L~L~~N-~l~~~--~~l~~l~~L~~L~Ls~N-~i~~~~---~l~~l~~L~~L~L~~N-~i~~~---~~l~~l~~L~ 175 (263)
T 1xeu_A 107 CLSRLFLDNN-ELRDT--DSLIHLKNLEILSIRNN-KLKSIV---MLGFLSKLEVLDLHGN-EITNT---GGLTRLKKVN 175 (263)
T ss_dssp SCCEEECCSS-CCSBS--GGGTTCTTCCEEECTTS-CCCBCG---GGGGCTTCCEEECTTS-CCCBC---TTSTTCCCCC
T ss_pred cccEEEccCC-ccCCC--hhhcCcccccEEECCCC-cCCCCh---HHccCCCCCEEECCCC-cCcch---HHhccCCCCC
Confidence 7777777774 45543 24566777777777763 454431 2334677777777777 55543 2223356777
Q ss_pred EEEeccCCCChh
Q 007252 530 QINLSYCALSDM 541 (611)
Q Consensus 530 ~L~l~~~~l~~~ 541 (611)
.|++++|+++..
T Consensus 176 ~L~l~~N~~~~~ 187 (263)
T 1xeu_A 176 WIDLTGQKCVNE 187 (263)
T ss_dssp EEEEEEEEEECC
T ss_pred EEeCCCCcccCC
Confidence 777777765544
No 114
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.86 E-value=2.5e-09 Score=89.23 Aligned_cols=130 Identities=22% Similarity=0.234 Sum_probs=81.1
Q ss_pred cCCCcEEecCCCCCCCh-hhhhhhccCCCceEEEecCCCCCChHhHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhcCc
Q 007252 371 CLRLEEIDLTDCNGVND-KGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCK 449 (611)
Q Consensus 371 ~~~L~~L~l~~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 449 (611)
.++|++|++++ +.+++ .....+..+++|+.|+++++ .++.. .....+++|++|++++| .++.. +......++
T Consensus 16 ~~~l~~L~l~~-n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~---~~~~~l~~L~~L~Ls~n-~i~~~-~~~~~~~l~ 88 (149)
T 2je0_A 16 PSDVKELVLDN-SRSNEGKLEGLTDEFEELEFLSTINV-GLTSI---ANLPKLNKLKKLELSDN-RVSGG-LEVLAEKCP 88 (149)
T ss_dssp GGGCSEEECTT-CBCBTTBCCSCCTTCTTCCEEECTTS-CCCCC---TTCCCCTTCCEEECCSS-CCCSC-THHHHHHCT
T ss_pred CccCeEEEccC-CcCChhHHHHHHhhcCCCcEEECcCC-CCCCc---hhhhcCCCCCEEECCCC-cccch-HHHHhhhCC
Confidence 35677777777 45552 22234456777777777776 55443 22235677888888876 44432 333444578
Q ss_pred cCceecccccCCCChH-HHHHhhCCCCCCEEecCCCccccHHHH--HHHHhcCCccCEeeccc
Q 007252 450 KLKKLNLSYCVNVTDR-GMEHIRFIEDLSDLELRGLTKITSAGL--TALAAGCKRLADLDLKH 509 (611)
Q Consensus 450 ~L~~L~l~~c~~l~~~-~~~~l~~~~~L~~L~l~~c~~l~~~~~--~~~~~~~~~L~~L~l~~ 509 (611)
+|++|+++++ .+++. ....+..+++|++|++++| .++.... ......+++|+.|++++
T Consensus 89 ~L~~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 89 NLTHLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp TCCEEECTTS-CCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCEEECCCC-cCCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCCC
Confidence 8888888884 56664 3356777888888888885 4544322 23445688888888763
No 115
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.85 E-value=1.8e-09 Score=99.52 Aligned_cols=57 Identities=12% Similarity=0.144 Sum_probs=25.4
Q ss_pred cCCccCEeeccccCCCCHHHHHHHHhhCCCCCEEEeccCCCChhHHHHHhccccccccceeecc
Q 007252 498 GCKRLADLDLKHCAKIDDSGFWALAYYSQNLRQINLSYCALSDMALCMVMGNMTRLQDAKLVHL 561 (611)
Q Consensus 498 ~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~l~~~~~L~~l~l~~~ 561 (611)
.+++|+.|++++| .+++.. ....+++|+.|++++|.+++. ..+..+++|+.|++.++
T Consensus 126 ~l~~L~~L~Ls~N-~i~~~~---~l~~l~~L~~L~L~~N~i~~~---~~l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 126 HLKNLEILSIRNN-KLKSIV---MLGFLSKLEVLDLHGNEITNT---GGLTRLKKVNWIDLTGQ 182 (263)
T ss_dssp TCTTCCEEECTTS-CCCBCG---GGGGCTTCCEEECTTSCCCBC---TTSTTCCCCCEEEEEEE
T ss_pred CcccccEEECCCC-cCCCCh---HHccCCCCCEEECCCCcCcch---HHhccCCCCCEEeCCCC
Confidence 3455555555555 443321 122234555555555554443 12344445555554443
No 116
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.78 E-value=3.5e-09 Score=69.56 Aligned_cols=41 Identities=22% Similarity=0.260 Sum_probs=35.8
Q ss_pred CCcccCCcHHHHHHHHhhhCCCCCchhhHhhchhHHhhhccc
Q 007252 4 SSALDVLTEDLLVRVREKIGDELDSKTWRLVCKEFSRVDSVT 45 (611)
Q Consensus 4 ~~~~~~LP~e~l~~If~~L~~~~~~~~~~~vc~~w~~~~~~~ 45 (611)
...|..||+|++.+||+||+ .+|+.+++.|||+|+.++...
T Consensus 6 ~~~~~~LP~eil~~I~~~L~-~~dl~~~~~Vck~w~~~~~~~ 46 (53)
T 1fs1_A 6 GVSWDSLPDELLLGIFSCLC-LPELLKVSGVCKRWYRLASDE 46 (53)
T ss_dssp ---CCSSCHHHHHHHHTTSC-GGGHHHHHTTCHHHHHHHTCG
T ss_pred CCCHHHCCHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhCCh
Confidence 56789999999999999999 999999999999999988753
No 117
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.77 E-value=2.5e-10 Score=110.64 Aligned_cols=37 Identities=14% Similarity=0.123 Sum_probs=19.9
Q ss_pred CCCceeccCCCCCccchhHHHHhhcCCCccEEEccCccc
Q 007252 275 SGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARI 313 (611)
Q Consensus 275 ~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 313 (611)
+++++|+++++. +.......+..+++|++|+++++.+
T Consensus 30 ~~l~~L~Ls~N~--i~~i~~~~f~~l~~L~~L~Ls~N~i 66 (350)
T 4ay9_X 30 RNAIELRFVLTK--LRVIQKGAFSGFGDLEKIEISQNDV 66 (350)
T ss_dssp TTCSEEEEESCC--CSEECTTSSTTCTTCCEEEEECCTT
T ss_pred CCCCEEEccCCc--CCCcCHHHHcCCCCCCEEECcCCCC
Confidence 456666666653 2222233455566666666666543
No 118
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.75 E-value=4.6e-10 Score=99.84 Aligned_cols=153 Identities=15% Similarity=0.056 Sum_probs=79.2
Q ss_pred CCCcEEecCCCCCCChhhhhhhccCCCceEEEecCCCCCChHhHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhcCccC
Q 007252 372 LRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKKL 451 (611)
Q Consensus 372 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 451 (611)
++|++|++++ +.++......+..+++|++|+++++ .++...... ...+++|++|+++++ .++.... .....+++|
T Consensus 28 ~~l~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L 102 (208)
T 2o6s_A 28 AQTTYLDLET-NSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGV-FNKLTSLTYLNLSTN-QLQSLPN-GVFDKLTQL 102 (208)
T ss_dssp TTCSEEECCS-SCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTC
T ss_pred CCCcEEEcCC-CccCcCChhhhcccccCcEEECCCC-ccCccChhh-cCCCCCcCEEECCCC-cCCccCH-hHhcCccCC
Confidence 3566666666 4555444344555666666666665 333221111 124566666666664 3331110 112345667
Q ss_pred ceecccccCCCChHHHHHhhCCCCCCEEecCCCccccHHHHHHHHhcCCccCEeeccccCCCCHHHHHHHHhhCCCCCEE
Q 007252 452 KKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQNLRQI 531 (611)
Q Consensus 452 ~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L 531 (611)
++|++++ +.++......+..+++|+.|+++++ .++.... .....+++|+.|++++|+ +. ..+++|++|
T Consensus 103 ~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~-~~--------~~~~~l~~L 170 (208)
T 2o6s_A 103 KELALNT-NQLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPD-GVFDRLTSLQYIWLHDNP-WD--------CTCPGIRYL 170 (208)
T ss_dssp CEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCT-TTTTTCTTCCEEECCSCC-BC--------CCTTTTHHH
T ss_pred CEEEcCC-CcCcccCHhHhccCCcCCEEECCCC-ccceeCH-HHhccCCCccEEEecCCC-ee--------cCCCCHHHH
Confidence 7777766 3455444344556677777777763 4432111 112346677777777773 22 124666666
Q ss_pred EeccCCCChh
Q 007252 532 NLSYCALSDM 541 (611)
Q Consensus 532 ~l~~~~l~~~ 541 (611)
++..|.++..
T Consensus 171 ~~~~n~~~g~ 180 (208)
T 2o6s_A 171 SEWINKHSGV 180 (208)
T ss_dssp HHHHHHCTTT
T ss_pred HHHHHhCCce
Confidence 6666665533
No 119
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.74 E-value=6.8e-09 Score=88.64 Aligned_cols=131 Identities=21% Similarity=0.176 Sum_probs=76.3
Q ss_pred cCCCcEEecCCCCCCChhhh-hhhccCCCceEEEecCCCCCChHhHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhcCc
Q 007252 371 CLRLEEIDLTDCNGVNDKGL-EYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCK 449 (611)
Q Consensus 371 ~~~L~~L~l~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 449 (611)
.++|++|++++ +.+++..+ ..+..+++|+.|++++| .++.. .....+++|++|++++| .++.. +......++
T Consensus 23 ~~~L~~L~l~~-n~l~~~~i~~~~~~l~~L~~L~l~~n-~l~~~---~~~~~l~~L~~L~Ls~N-~l~~~-~~~~~~~l~ 95 (168)
T 2ell_A 23 PAAVRELVLDN-CKSNDGKIEGLTAEFVNLEFLSLINV-GLISV---SNLPKLPKLKKLELSEN-RIFGG-LDMLAEKLP 95 (168)
T ss_dssp TTSCSEEECCS-CBCBTTBCSSCCGGGGGCCEEEEESS-CCCCC---SSCCCCSSCCEEEEESC-CCCSC-CCHHHHHCT
T ss_pred cccCCEEECCC-CCCChhhHHHHHHhCCCCCEEeCcCC-CCCCh---hhhccCCCCCEEECcCC-cCchH-HHHHHhhCC
Confidence 46788888887 45552222 33456778888888877 45543 22235677788888776 34321 233334467
Q ss_pred cCceecccccCCCChH-HHHHhhCCCCCCEEecCCCccccHHHH--HHHHhcCCccCEeecccc
Q 007252 450 KLKKLNLSYCVNVTDR-GMEHIRFIEDLSDLELRGLTKITSAGL--TALAAGCKRLADLDLKHC 510 (611)
Q Consensus 450 ~L~~L~l~~c~~l~~~-~~~~l~~~~~L~~L~l~~c~~l~~~~~--~~~~~~~~~L~~L~l~~c 510 (611)
+|+.|+++++ .+++. .+..+..+++|+.|++++| .++.... ......+++|+.|++++|
T Consensus 96 ~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 96 NLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp TCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred CCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCC
Confidence 7777777774 45553 2345666777777777764 3432211 123345666666666666
No 120
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.72 E-value=6.1e-10 Score=99.05 Aligned_cols=108 Identities=17% Similarity=0.077 Sum_probs=48.7
Q ss_pred CccCceecccccCCCChHHHHHhhCCCCCCEEecCCCccccHHHHHHHHhcCCccCEeeccccCCCCHHHHHHHHhhCCC
Q 007252 448 CKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQN 527 (611)
Q Consensus 448 ~~~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 527 (611)
+++|++|++++ +.++......+..+++|++|+++++ .++.... .....+++|+.|++++| .++..... ....+++
T Consensus 51 l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~ 125 (208)
T 2o6s_A 51 LTSLTQLYLGG-NKLQSLPNGVFNKLTSLTYLNLSTN-QLQSLPN-GVFDKLTQLKELALNTN-QLQSLPDG-VFDKLTQ 125 (208)
T ss_dssp CTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-CCCCCCTT-TTTTCTT
T ss_pred cccCcEEECCC-CccCccChhhcCCCCCcCEEECCCC-cCCccCH-hHhcCccCCCEEEcCCC-cCcccCHh-HhccCCc
Confidence 34444444444 2333222222344555555555542 2321110 11123555666666555 44322111 1123466
Q ss_pred CCEEEeccCCCChhHHHHHhccccccccceeecc
Q 007252 528 LRQINLSYCALSDMALCMVMGNMTRLQDAKLVHL 561 (611)
Q Consensus 528 L~~L~l~~~~l~~~~~~~~l~~~~~L~~l~l~~~ 561 (611)
|++|++++|.++.... ..+..+++|+.|++.++
T Consensus 126 L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 126 LKDLRLYQNQLKSVPD-GVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp CCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSC
T ss_pred CCEEECCCCccceeCH-HHhccCCCccEEEecCC
Confidence 6666666666554443 34555666666666554
No 121
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.70 E-value=2.1e-09 Score=104.49 Aligned_cols=157 Identities=17% Similarity=0.099 Sum_probs=79.3
Q ss_pred CCcEEecCCCCCCChhhhhhhc-cCCCceEEEecCCCCCChHhHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhcCccC
Q 007252 373 RLEEIDLTDCNGVNDKGLEYLS-RCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKKL 451 (611)
Q Consensus 373 ~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 451 (611)
.++.|++++ +.++......+. .+++|+.|+++++ .++......+. .+++|++|+++++ .++.... ..+..+++|
T Consensus 40 ~l~~L~Ls~-N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~-~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L 114 (361)
T 2xot_A 40 YTALLDLSH-NNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFV-PVPNLRYLDLSSN-HLHTLDE-FLFSDLQAL 114 (361)
T ss_dssp TCSEEECCS-SCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTT-TCTTCCEEECCSS-CCCEECT-TTTTTCTTC
T ss_pred CCCEEECCC-CCCCccChhhhhhcccccCEEECCCC-cCCccChhhcc-CCCCCCEEECCCC-cCCcCCH-HHhCCCcCC
Confidence 455566665 455544444444 5566666666654 44332221222 4566666666654 3332111 112345666
Q ss_pred ceecccccCCCChHHHHHhhCCCCCCEEecCCCccccHHHHHHH--HhcCCccCEeeccccCCCCHHHHHHHHhhCCC--
Q 007252 452 KKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTAL--AAGCKRLADLDLKHCAKIDDSGFWALAYYSQN-- 527 (611)
Q Consensus 452 ~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~c~~l~~~~~~~~--~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~-- 527 (611)
+.|+|++ +.++......+..+++|+.|++++ +.++......+ ...+++|+.|++++| .++......+.. ++.
T Consensus 115 ~~L~L~~-N~i~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~-l~~~~ 190 (361)
T 2xot_A 115 EVLLLYN-NHIVVVDRNAFEDMAQLQKLYLSQ-NQISRFPVELIKDGNKLPKLMLLDLSSN-KLKKLPLTDLQK-LPAWV 190 (361)
T ss_dssp CEEECCS-SCCCEECTTTTTTCTTCCEEECCS-SCCCSCCGGGTC----CTTCCEEECCSS-CCCCCCHHHHHH-SCHHH
T ss_pred CEEECCC-CcccEECHHHhCCcccCCEEECCC-CcCCeeCHHHhcCcccCCcCCEEECCCC-CCCccCHHHhhh-ccHhh
Confidence 7776666 345544444556667777777776 34443211111 024667777777777 555443333322 244
Q ss_pred CCEEEeccCCC
Q 007252 528 LRQINLSYCAL 538 (611)
Q Consensus 528 L~~L~l~~~~l 538 (611)
++.|++++|++
T Consensus 191 l~~l~l~~N~~ 201 (361)
T 2xot_A 191 KNGLYLHNNPL 201 (361)
T ss_dssp HTTEECCSSCE
T ss_pred cceEEecCCCc
Confidence 36677777774
No 122
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.69 E-value=1.2e-08 Score=104.07 Aligned_cols=155 Identities=14% Similarity=0.003 Sum_probs=87.7
Q ss_pred ccCCCcEEecCCCCCCChhhhhhhccCCCceEEEecCCCCCChHhHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhcCc
Q 007252 370 FCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCK 449 (611)
Q Consensus 370 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 449 (611)
.+++|+.|++++ +.++.... +.+ +|+.|+++++ .++.... .+++|+.|+++++ .++. +.. .++
T Consensus 98 ~l~~L~~L~Ls~-N~l~~ip~--l~~--~L~~L~Ls~N-~l~~lp~-----~l~~L~~L~Ls~N-~l~~--lp~---~l~ 160 (571)
T 3cvr_A 98 LPASLEYLDACD-NRLSTLPE--LPA--SLKHLDVDNN-QLTMLPE-----LPALLEYINADNN-QLTM--LPE---LPT 160 (571)
T ss_dssp CCTTCCEEECCS-SCCSCCCC--CCT--TCCEEECCSS-CCSCCCC-----CCTTCCEEECCSS-CCSC--CCC---CCT
T ss_pred ccCCCCEEEccC-CCCCCcch--hhc--CCCEEECCCC-cCCCCCC-----cCccccEEeCCCC-ccCc--CCC---cCC
Confidence 356777777777 45554211 322 7777777776 4443111 4677888888775 3432 111 457
Q ss_pred cCceecccccCCCChHHHHHhhCCCCCCEEecCCCccccHHHH--HHHHhcCCccCEeeccccCCCCHHHHHHHHhhCCC
Q 007252 450 KLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGL--TALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQN 527 (611)
Q Consensus 450 ~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~c~~l~~~~~--~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 527 (611)
+|+.|+++++ .++.... +. ++|+.|+++++ .++.... ..+....+.|+.|++++| .++... ..+. .+++
T Consensus 161 ~L~~L~Ls~N-~L~~lp~--l~--~~L~~L~Ls~N-~L~~lp~~~~~L~~~~~~L~~L~Ls~N-~l~~lp-~~l~-~l~~ 231 (571)
T 3cvr_A 161 SLEVLSVRNN-QLTFLPE--LP--ESLEALDVSTN-LLESLPAVPVRNHHSEETEIFFRCREN-RITHIP-ENIL-SLDP 231 (571)
T ss_dssp TCCEEECCSS-CCSCCCC--CC--TTCCEEECCSS-CCSSCCCCC--------CCEEEECCSS-CCCCCC-GGGG-GSCT
T ss_pred CcCEEECCCC-CCCCcch--hh--CCCCEEECcCC-CCCchhhHHHhhhcccccceEEecCCC-cceecC-HHHh-cCCC
Confidence 7888888774 4554222 32 77888888874 4542111 011111233388888888 666422 1122 3688
Q ss_pred CCEEEeccCCCChhHHHHHhcccc
Q 007252 528 LRQINLSYCALSDMALCMVMGNMT 551 (611)
Q Consensus 528 L~~L~l~~~~l~~~~~~~~l~~~~ 551 (611)
|+.|++++|+++.... ..+..++
T Consensus 232 L~~L~L~~N~l~~~~p-~~l~~l~ 254 (571)
T 3cvr_A 232 TCTIILEDNPLSSRIR-ESLSQQT 254 (571)
T ss_dssp TEEEECCSSSCCHHHH-HHHHHHH
T ss_pred CCEEEeeCCcCCCcCH-HHHHHhh
Confidence 8888888888877666 5555543
No 123
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.69 E-value=2.6e-09 Score=92.01 Aligned_cols=106 Identities=11% Similarity=0.161 Sum_probs=50.2
Q ss_pred cCceecccccCCCChHHHHHhhCCCCCCEEecCCCccccHHHHHHHHhcCCccCEeeccccCCCCHHHHHHHHhhCCCCC
Q 007252 450 KLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQNLR 529 (611)
Q Consensus 450 ~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~ 529 (611)
+|+.|+++++ .++.. ..+..+++|+.|+++++ .++... ..+...+++|+.|++++| .+++.+.......+++|+
T Consensus 43 ~L~~L~Ls~N-~l~~~--~~l~~l~~L~~L~Ls~N-~l~~~~-~~~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~ 116 (176)
T 1a9n_A 43 QFDAIDFSDN-EIRKL--DGFPLLRRLKTLLVNNN-RICRIG-EGLDQALPDLTELILTNN-SLVELGDLDPLASLKSLT 116 (176)
T ss_dssp CCSEEECCSS-CCCEE--CCCCCCSSCCEEECCSS-CCCEEC-SCHHHHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCC
T ss_pred CCCEEECCCC-CCCcc--cccccCCCCCEEECCCC-cccccC-cchhhcCCCCCEEECCCC-cCCcchhhHhhhcCCCCC
Confidence 4444544442 33322 23444556666666553 343211 112234666666666666 554322111222346666
Q ss_pred EEEeccCCCChhHHH--HHhccccccccceeecc
Q 007252 530 QINLSYCALSDMALC--MVMGNMTRLQDAKLVHL 561 (611)
Q Consensus 530 ~L~l~~~~l~~~~~~--~~l~~~~~L~~l~l~~~ 561 (611)
.|++++|+++..+.. ..+..+++|+.|++.++
T Consensus 117 ~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 117 YLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp EEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred EEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 666666665433220 13555666666665544
No 124
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.65 E-value=1.4e-09 Score=105.72 Aligned_cols=176 Identities=15% Similarity=0.047 Sum_probs=119.6
Q ss_pred cEEecCCCCCCChhhhhhhccCCCceEEEecCCCCCChHhHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhcCccCcee
Q 007252 375 EEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKKLKKL 454 (611)
Q Consensus 375 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 454 (611)
+.++.++ ..++.... .+ .+.++.|+++++ .++......+...+++|++|+++++ .++..... .+..+++|++|
T Consensus 21 ~~l~c~~-~~l~~iP~-~~--~~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~-~~~~l~~L~~L 93 (361)
T 2xot_A 21 NILSCSK-QQLPNVPQ-SL--PSYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSE-AFVPVPNLRYL 93 (361)
T ss_dssp TEEECCS-SCCSSCCS-SC--CTTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSS-CCCEECTT-TTTTCTTCCEE
T ss_pred CEEEeCC-CCcCccCc-cC--CCCCCEEECCCC-CCCccChhhhhhcccccCEEECCCC-cCCccChh-hccCCCCCCEE
Confidence 4566666 44443211 11 346899999997 6665443333336899999999986 55532211 22467999999
Q ss_pred cccccCCCChHHHHHhhCCCCCCEEecCCCccccHHHHHHHHhcCCccCEeeccccCCCCHHHHHHHH--hhCCCCCEEE
Q 007252 455 NLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALA--YYSQNLRQIN 532 (611)
Q Consensus 455 ~l~~c~~l~~~~~~~l~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~--~~~~~L~~L~ 532 (611)
+|++ +.++......+..+++|+.|+++++ .++..... ....+++|+.|++++| .++......+. ..+++|+.|+
T Consensus 94 ~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~-~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~ 169 (361)
T 2xot_A 94 DLSS-NHLHTLDEFLFSDLQALEVLLLYNN-HIVVVDRN-AFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLD 169 (361)
T ss_dssp ECCS-SCCCEECTTTTTTCTTCCEEECCSS-CCCEECTT-TTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEE
T ss_pred ECCC-CcCCcCCHHHhCCCcCCCEEECCCC-cccEECHH-HhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEE
Confidence 9999 5687666666788999999999994 56532211 2346899999999999 77653322221 3469999999
Q ss_pred eccCCCChhHHHHHhcccccc--ccceeeccc
Q 007252 533 LSYCALSDMALCMVMGNMTRL--QDAKLVHLT 562 (611)
Q Consensus 533 l~~~~l~~~~~~~~l~~~~~L--~~l~l~~~~ 562 (611)
+++|.++.... ..+..++.+ +.|++.+.+
T Consensus 170 L~~N~l~~l~~-~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 170 LSSNKLKKLPL-TDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp CCSSCCCCCCH-HHHHHSCHHHHTTEECCSSC
T ss_pred CCCCCCCccCH-HHhhhccHhhcceEEecCCC
Confidence 99999988776 677777764 778876643
No 125
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.60 E-value=1.5e-09 Score=105.07 Aligned_cols=114 Identities=8% Similarity=-0.045 Sum_probs=52.4
Q ss_pred cCCcCcEEeccCcccChHHHHHhhhcCCCcEEEecCCCCCChhHHHHHHhcCCCccEEEeccccccChHHHHHHHhcCCC
Q 007252 197 KCLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSG 276 (611)
Q Consensus 197 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~ 276 (611)
.+++|+.|+++++.+.......+....++..+.+.++..+.......+......++.|+++++.. .. ++.......+
T Consensus 102 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i-~~--i~~~~f~~~~ 178 (350)
T 4ay9_X 102 NLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI-QE--IHNSAFNGTQ 178 (350)
T ss_dssp CCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC-CE--ECTTSSTTEE
T ss_pred hccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc-cC--CChhhccccc
Confidence 45666666666664443222222334455566665444333322222222124566666665322 11 1111112345
Q ss_pred CceeccCCCCCccchhHHHHhhcCCCccEEEccCcccC
Q 007252 277 LLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARIS 314 (611)
Q Consensus 277 L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 314 (611)
++++.+.++.. +.......+..+++|+.|+++++.++
T Consensus 179 L~~l~l~~~n~-l~~i~~~~f~~l~~L~~LdLs~N~l~ 215 (350)
T 4ay9_X 179 LDELNLSDNNN-LEELPNDVFHGASGPVILDISRTRIH 215 (350)
T ss_dssp EEEEECTTCTT-CCCCCTTTTTTEECCSEEECTTSCCC
T ss_pred hhHHhhccCCc-ccCCCHHHhccCcccchhhcCCCCcC
Confidence 66666654332 33323334555666777777666554
No 126
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.57 E-value=1.1e-08 Score=91.52 Aligned_cols=59 Identities=20% Similarity=0.128 Sum_probs=29.2
Q ss_pred CCCcEEecCCCCCCChhhhhhhccCCCceEEEecCCCCCChHhHHHHHhcCCCCcEEeccCC
Q 007252 372 LRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKC 433 (611)
Q Consensus 372 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 433 (611)
++|+.|++++ +.++......+..+++|+.|+++++ .++......+. .+++|++|+++++
T Consensus 32 ~~l~~L~l~~-n~i~~i~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~-~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 32 ETITEIRLEQ-NTIKVIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQ-GLRSLNSLVLYGN 90 (220)
T ss_dssp TTCCEEECCS-SCCCEECTTSSTTCTTCCEEECCSS-CCCEECTTTTT-TCSSCCEEECCSS
T ss_pred cCCCEEECCC-CcCCCcCHhHhhCCCCCCEEECCCC-cCCCcCHHHhh-CCcCCCEEECCCC
Confidence 3566666666 4555444444555666666666655 33322111111 3455555555543
No 127
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.57 E-value=2.1e-09 Score=96.15 Aligned_cols=153 Identities=16% Similarity=0.111 Sum_probs=87.0
Q ss_pred cEEecCCCCCCChhhhhhhccCCCceEEEecCCCCCChHhHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhcCccCcee
Q 007252 375 EEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKKLKKL 454 (611)
Q Consensus 375 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 454 (611)
+.+++++ +.++.... .+ .+.++.|+++++ .++..........+++|++|+++++ .++..... .+..+++|++|
T Consensus 14 ~~l~~s~-n~l~~iP~-~~--~~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~-~~~~l~~L~~L 86 (220)
T 2v70_A 14 TTVDCSN-QKLNKIPE-HI--PQYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNN-KITDIEEG-AFEGASGVNEI 86 (220)
T ss_dssp TEEECCS-SCCSSCCS-CC--CTTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSS-CCCEECTT-TTTTCTTCCEE
T ss_pred CEeEeCC-CCcccCcc-CC--CCCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCC-cCCEECHH-HhCCCCCCCEE
Confidence 4666666 44443211 11 345678888886 5544321111236788888888875 44422111 12456788888
Q ss_pred cccccCCCChHHHHHhhCCCCCCEEecCCCccccHHHHHHHHhcCCccCEeeccccCCCCHHHHHHHHhhCCCCCEEEec
Q 007252 455 NLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQNLRQINLS 534 (611)
Q Consensus 455 ~l~~c~~l~~~~~~~l~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~ 534 (611)
++++ +.++......+..+++|++|+++++ .++..... ....+++|+.|++++| .++......+ ..+++|+.|+++
T Consensus 87 ~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~L~ 161 (220)
T 2v70_A 87 LLTS-NRLENVQHKMFKGLESLKTLMLRSN-RITCVGND-SFIGLSSVRLLSLYDN-QITTVAPGAF-DTLHSLSTLNLL 161 (220)
T ss_dssp ECCS-SCCCCCCGGGGTTCSSCCEEECTTS-CCCCBCTT-SSTTCTTCSEEECTTS-CCCCBCTTTT-TTCTTCCEEECC
T ss_pred ECCC-CccCccCHhHhcCCcCCCEEECCCC-cCCeECHh-HcCCCccCCEEECCCC-cCCEECHHHh-cCCCCCCEEEec
Confidence 8877 4566555555667788888888773 44432111 1234677777777777 5544322222 235777777777
Q ss_pred cCCCC
Q 007252 535 YCALS 539 (611)
Q Consensus 535 ~~~l~ 539 (611)
+|++.
T Consensus 162 ~N~l~ 166 (220)
T 2v70_A 162 ANPFN 166 (220)
T ss_dssp SCCEE
T ss_pred CcCCc
Confidence 77743
No 128
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.56 E-value=5.3e-09 Score=94.26 Aligned_cols=133 Identities=14% Similarity=0.054 Sum_probs=71.6
Q ss_pred CCceEEEecCCCCCChHhHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhcCccCceecccccCCCChHHHHHhhCCCCC
Q 007252 397 SELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKKLKKLNLSYCVNVTDRGMEHIRFIEDL 476 (611)
Q Consensus 397 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~L 476 (611)
++|+.|+++++ .++......+ ..+++|++|+++++ .++.... .....+++|+.|++++ +.++......+..+++|
T Consensus 40 ~~L~~L~Ls~n-~i~~~~~~~~-~~l~~L~~L~L~~N-~l~~i~~-~~~~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L 114 (229)
T 3e6j_A 40 TNAQILYLHDN-QITKLEPGVF-DSLINLKELYLGSN-QLGALPV-GVFDSLTQLTVLDLGT-NQLTVLPSAVFDRLVHL 114 (229)
T ss_dssp TTCSEEECCSS-CCCCCCTTTT-TTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTC
T ss_pred CCCCEEEcCCC-ccCccCHHHh-hCccCCcEEECCCC-CCCCcCh-hhcccCCCcCEEECCC-CcCCccChhHhCcchhh
Confidence 67788888776 4443222222 25677777777775 3332111 1123467777777776 35554444445566777
Q ss_pred CEEecCCCccccHHHHHHHHhcCCccCEeeccccCCCCHHHHHHHHhhCCCCCEEEeccCCCC
Q 007252 477 SDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQNLRQINLSYCALS 539 (611)
Q Consensus 477 ~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~~~l~ 539 (611)
+.|++++ +.++.. ......+++|+.|++++| .++.... .....+++|+.|++++|++.
T Consensus 115 ~~L~Ls~-N~l~~l--p~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 115 KELFMCC-NKLTEL--PRGIERLTHLTHLALDQN-QLKSIPH-GAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CEEECCS-SCCCSC--CTTGGGCTTCSEEECCSS-CCCCCCT-TTTTTCTTCCEEECTTSCBC
T ss_pred CeEeccC-Cccccc--CcccccCCCCCEEECCCC-cCCccCH-HHHhCCCCCCEEEeeCCCcc
Confidence 7777766 344421 111234666677777666 5543221 11223466666666666644
No 129
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.55 E-value=3.4e-09 Score=94.85 Aligned_cols=133 Identities=16% Similarity=0.083 Sum_probs=75.5
Q ss_pred CCceEEEecCCCCCChHhHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhcCccCceecccccCCCChHHHHHhhCCCCC
Q 007252 397 SELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKKLKKLNLSYCVNVTDRGMEHIRFIEDL 476 (611)
Q Consensus 397 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~L 476 (611)
++++.|+++++ .++......+ ..+++|++|+++++ .++..... .+..+++|++|++++ +.++......+..+++|
T Consensus 32 ~~l~~L~l~~n-~i~~i~~~~~-~~l~~L~~L~Ls~N-~i~~~~~~-~~~~l~~L~~L~Ls~-N~l~~l~~~~f~~l~~L 106 (220)
T 2v9t_B 32 ETITEIRLEQN-TIKVIPPGAF-SPYKKLRRIDLSNN-QISELAPD-AFQGLRSLNSLVLYG-NKITELPKSLFEGLFSL 106 (220)
T ss_dssp TTCCEEECCSS-CCCEECTTSS-TTCTTCCEEECCSS-CCCEECTT-TTTTCSSCCEEECCS-SCCCCCCTTTTTTCTTC
T ss_pred cCCCEEECCCC-cCCCcCHhHh-hCCCCCCEEECCCC-cCCCcCHH-HhhCCcCCCEEECCC-CcCCccCHhHccCCCCC
Confidence 57888888876 5543322222 25677888888775 44322111 123467777777777 45655444445667777
Q ss_pred CEEecCCCccccHHHHHHHHhcCCccCEeeccccCCCCHHHHHHHHhhCCCCCEEEeccCCC
Q 007252 477 SDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQNLRQINLSYCAL 538 (611)
Q Consensus 477 ~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~~~l 538 (611)
+.|++++ +.++..... ....+++|+.|++++| .++......+ ..+++|+.|++++|++
T Consensus 107 ~~L~L~~-N~l~~~~~~-~~~~l~~L~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 107 QLLLLNA-NKINCLRVD-AFQDLHNLNLLSLYDN-KLQTIAKGTF-SPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CEEECCS-SCCCCCCTT-TTTTCTTCCEEECCSS-CCSCCCTTTT-TTCTTCCEEECCSSCE
T ss_pred CEEECCC-CCCCEeCHH-HcCCCCCCCEEECCCC-cCCEECHHHH-hCCCCCCEEEeCCCCc
Confidence 7777777 344432111 1234667777777777 5543322112 2346777777777764
No 130
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.55 E-value=4.1e-09 Score=92.74 Aligned_cols=39 Identities=21% Similarity=0.074 Sum_probs=17.5
Q ss_pred CCccCEeeccccCCCCHHHHHHHHhhCCCCCEEEeccCCC
Q 007252 499 CKRLADLDLKHCAKIDDSGFWALAYYSQNLRQINLSYCAL 538 (611)
Q Consensus 499 ~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~~~l 538 (611)
+++|+.|++++| .+++.+.......+++|++|++++|++
T Consensus 114 l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 114 LVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp HHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred CCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCcc
Confidence 445555555555 444322211222335555555555554
No 131
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.53 E-value=3.5e-10 Score=116.10 Aligned_cols=101 Identities=17% Similarity=0.132 Sum_probs=55.0
Q ss_pred cCceecccccCCCChHHHHHhhCCCCCCEEecCCCccccHHHHHHHHhcCCccCEeeccccCCCCHHHHHHHHhhCCCCC
Q 007252 450 KLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQNLR 529 (611)
Q Consensus 450 ~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~ 529 (611)
.|+.|+++++ .++... .+..+++|+.|+++++ .++. +......+++|+.|++++| .++.. . ....+++|+
T Consensus 442 ~L~~L~Ls~n-~l~~lp--~~~~l~~L~~L~Ls~N-~l~~--lp~~~~~l~~L~~L~Ls~N-~l~~l--p-~l~~l~~L~ 511 (567)
T 1dce_A 442 DVRVLHLAHK-DLTVLC--HLEQLLLVTHLDLSHN-RLRA--LPPALAALRCLEVLQASDN-ALENV--D-GVANLPRLQ 511 (567)
T ss_dssp TCSEEECTTS-CCSSCC--CGGGGTTCCEEECCSS-CCCC--CCGGGGGCTTCCEEECCSS-CCCCC--G-GGTTCSSCC
T ss_pred CceEEEecCC-CCCCCc--CccccccCcEeecCcc-cccc--cchhhhcCCCCCEEECCCC-CCCCC--c-ccCCCCCCc
Confidence 4666666663 444322 2555666666666663 4441 1112334666666666666 55432 1 223356666
Q ss_pred EEEeccCCCChhH-HHHHhccccccccceeecc
Q 007252 530 QINLSYCALSDMA-LCMVMGNMTRLQDAKLVHL 561 (611)
Q Consensus 530 ~L~l~~~~l~~~~-~~~~l~~~~~L~~l~l~~~ 561 (611)
.|++++|.++... . ..+..+++|+.|++.++
T Consensus 512 ~L~Ls~N~l~~~~~p-~~l~~l~~L~~L~L~~N 543 (567)
T 1dce_A 512 ELLLCNNRLQQSAAI-QPLVSCPRLVLLNLQGN 543 (567)
T ss_dssp EEECCSSCCCSSSTT-GGGGGCTTCCEEECTTS
T ss_pred EEECCCCCCCCCCCc-HHHhcCCCCCEEEecCC
Confidence 7777666665553 2 45566666666666555
No 132
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.52 E-value=5.7e-08 Score=86.82 Aligned_cols=131 Identities=16% Similarity=0.110 Sum_probs=63.1
Q ss_pred CCcEEecCCCCCCChhh-hhhhccCCCceEEEecCCCCCChHhHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhcCccC
Q 007252 373 RLEEIDLTDCNGVNDKG-LEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKKL 451 (611)
Q Consensus 373 ~L~~L~l~~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 451 (611)
.+++|++++ +.++... ...+..+++|+.|+++++ .++......+. .+++|++|+++++ .++.... .....+++|
T Consensus 33 ~~~~L~L~~-N~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~-~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L 107 (220)
T 2v70_A 33 YTAELRLNN-NEFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFE-GASGVNEILLTSN-RLENVQH-KMFKGLESL 107 (220)
T ss_dssp TCSEEECCS-SCCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTT-TCTTCCEEECCSS-CCCCCCG-GGGTTCSSC
T ss_pred CCCEEEcCC-CcCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhC-CCCCCCEEECCCC-ccCccCH-hHhcCCcCC
Confidence 344555554 3443331 122344555555555554 33322211111 3455555555554 2221111 112345666
Q ss_pred ceecccccCCCChHHHHHhhCCCCCCEEecCCCccccHHHHHHHHhcCCccCEeeccccC
Q 007252 452 KKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCA 511 (611)
Q Consensus 452 ~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~ 511 (611)
++|++++ +.++......+..+++|+.|++++ +.++..... ....+++|+.|++++|+
T Consensus 108 ~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~-~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 108 KTLMLRS-NRITCVGNDSFIGLSSVRLLSLYD-NQITTVAPG-AFDTLHSLSTLNLLANP 164 (220)
T ss_dssp CEEECTT-SCCCCBCTTSSTTCTTCSEEECTT-SCCCCBCTT-TTTTCTTCCEEECCSCC
T ss_pred CEEECCC-CcCCeECHhHcCCCccCCEEECCC-CcCCEECHH-HhcCCCCCCEEEecCcC
Confidence 6666666 345544444455667777777776 344432111 12346777777777774
No 133
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.51 E-value=9.1e-08 Score=86.13 Aligned_cols=131 Identities=17% Similarity=0.067 Sum_probs=65.8
Q ss_pred CCCcEEecCCCCCCChhhhhhhccCCCceEEEecCCCCCChHhHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhcCccC
Q 007252 372 LRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKKL 451 (611)
Q Consensus 372 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 451 (611)
++|+.|++++ +.++......+..+++|+.|+++++ .++...... ...+++|+.|+++++ .++.... .....+++|
T Consensus 40 ~~L~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~-~~~l~~L~~L~Ls~N-~l~~l~~-~~~~~l~~L 114 (229)
T 3e6j_A 40 TNAQILYLHD-NQITKLEPGVFDSLINLKELYLGSN-QLGALPVGV-FDSLTQLTVLDLGTN-QLTVLPS-AVFDRLVHL 114 (229)
T ss_dssp TTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTC
T ss_pred CCCCEEEcCC-CccCccCHHHhhCccCCcEEECCCC-CCCCcChhh-cccCCCcCEEECCCC-cCCccCh-hHhCcchhh
Confidence 4555555555 4444443444455555666655554 332221111 124556666666654 3331110 112345666
Q ss_pred ceecccccCCCChHHHHHhhCCCCCCEEecCCCccccHHHHHHHHhcCCccCEeeccccC
Q 007252 452 KKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCA 511 (611)
Q Consensus 452 ~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~ 511 (611)
+.|++++ +.++.. ...+..+++|+.|++++ +.++.... .....+++|+.|++.+|+
T Consensus 115 ~~L~Ls~-N~l~~l-p~~~~~l~~L~~L~L~~-N~l~~~~~-~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 115 KELFMCC-NKLTEL-PRGIERLTHLTHLALDQ-NQLKSIPH-GAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp CEEECCS-SCCCSC-CTTGGGCTTCSEEECCS-SCCCCCCT-TTTTTCTTCCEEECTTSC
T ss_pred CeEeccC-Cccccc-CcccccCCCCCEEECCC-CcCCccCH-HHHhCCCCCCEEEeeCCC
Confidence 7776666 345422 12345677777777777 34543221 123456778888888773
No 134
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.49 E-value=3.4e-08 Score=100.85 Aligned_cols=163 Identities=12% Similarity=0.018 Sum_probs=111.0
Q ss_pred CCCcEEecCCCCCCChhhhhhhccCCCceEEEecCCCCCChHhHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhcCccC
Q 007252 372 LRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKKL 451 (611)
Q Consensus 372 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 451 (611)
++|+.|++++ +.++... ..+++|+.|+++++ .++.... + ..+|++|+++++ .++. +.. .+++|
T Consensus 80 ~~L~~L~Ls~-N~l~~ip----~~l~~L~~L~Ls~N-~l~~ip~--l---~~~L~~L~Ls~N-~l~~--lp~---~l~~L 142 (571)
T 3cvr_A 80 PQITVLEITQ-NALISLP----ELPASLEYLDACDN-RLSTLPE--L---PASLKHLDVDNN-QLTM--LPE---LPALL 142 (571)
T ss_dssp TTCSEEECCS-SCCSCCC----CCCTTCCEEECCSS-CCSCCCC--C---CTTCCEEECCSS-CCSC--CCC---CCTTC
T ss_pred CCCCEEECcC-CCCcccc----cccCCCCEEEccCC-CCCCcch--h---hcCCCEEECCCC-cCCC--CCC---cCccc
Confidence 5789999988 6666332 45789999999998 5554221 2 239999999986 4543 222 57999
Q ss_pred ceecccccCCCChHHHHHhhCCCCCCEEecCCCccccHHHHHHHHhcCCccCEeeccccCCCCHHHH--HHHHhhCCCCC
Q 007252 452 KKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGF--WALAYYSQNLR 529 (611)
Q Consensus 452 ~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~--~~~~~~~~~L~ 529 (611)
+.|+++++ .++.... .+++|+.|++++| .++.. ..+ .++|+.|++++| .++..+. ..+....+.|+
T Consensus 143 ~~L~Ls~N-~l~~lp~----~l~~L~~L~Ls~N-~L~~l--p~l---~~~L~~L~Ls~N-~L~~lp~~~~~L~~~~~~L~ 210 (571)
T 3cvr_A 143 EYINADNN-QLTMLPE----LPTSLEVLSVRNN-QLTFL--PEL---PESLEALDVSTN-LLESLPAVPVRNHHSEETEI 210 (571)
T ss_dssp CEEECCSS-CCSCCCC----CCTTCCEEECCSS-CCSCC--CCC---CTTCCEEECCSS-CCSSCCCCC--------CCE
T ss_pred cEEeCCCC-ccCcCCC----cCCCcCEEECCCC-CCCCc--chh---hCCCCEEECcCC-CCCchhhHHHhhhcccccce
Confidence 99999994 5664322 5789999999995 55542 111 289999999999 7763221 01111123339
Q ss_pred EEEeccCCCChhHHHHHhccccccccceeecccCCCH
Q 007252 530 QINLSYCALSDMALCMVMGNMTRLQDAKLVHLTNCTR 566 (611)
Q Consensus 530 ~L~l~~~~l~~~~~~~~l~~~~~L~~l~l~~~~~~~~ 566 (611)
.|++++|.++..+. .+..+++|+.|++.++ .++.
T Consensus 211 ~L~Ls~N~l~~lp~--~l~~l~~L~~L~L~~N-~l~~ 244 (571)
T 3cvr_A 211 FFRCRENRITHIPE--NILSLDPTCTIILEDN-PLSS 244 (571)
T ss_dssp EEECCSSCCCCCCG--GGGGSCTTEEEECCSS-SCCH
T ss_pred EEecCCCcceecCH--HHhcCCCCCEEEeeCC-cCCC
Confidence 99999999887653 4566999999999877 4544
No 135
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.48 E-value=1.1e-08 Score=90.05 Aligned_cols=129 Identities=19% Similarity=0.194 Sum_probs=89.8
Q ss_pred hcCccCceecccccCCCChHHHHHhhCCCCCCEEecCCCccccHHHHHHHHhcCCccCEeeccccCCCCHHHHHHHHhhC
Q 007252 446 NGCKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYS 525 (611)
Q Consensus 446 ~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~ 525 (611)
..+++|++|+++++ .++... .+..+++|+.|++++| .++. +......+++|+.|++++| .++... .+. .+
T Consensus 45 ~~l~~L~~L~ls~n-~l~~l~--~~~~l~~L~~L~l~~n-~l~~--l~~~~~~~~~L~~L~L~~N-~l~~l~--~~~-~l 114 (198)
T 1ds9_A 45 STLKACKHLALSTN-NIEKIS--SLSGMENLRILSLGRN-LIKK--IENLDAVADTLEELWISYN-QIASLS--GIE-KL 114 (198)
T ss_dssp HHTTTCSEEECSEE-EESCCC--CHHHHTTCCEEEEEEE-EECS--CSSHHHHHHHCSEEEEEEE-ECCCHH--HHH-HH
T ss_pred hcCCCCCEEECCCC-CCcccc--ccccCCCCCEEECCCC-Cccc--ccchhhcCCcCCEEECcCC-cCCcCC--ccc-cC
Confidence 34678888888774 455432 5667788888888884 4542 2223334679999999999 777643 333 35
Q ss_pred CCCCEEEeccCCCChhHHHHHhccccccccceeecccCCCH-------HHHHHHHhhcCCCccchh
Q 007252 526 QNLRQINLSYCALSDMALCMVMGNMTRLQDAKLVHLTNCTR-------EGFELALRSCCMRIKKVK 584 (611)
Q Consensus 526 ~~L~~L~l~~~~l~~~~~~~~l~~~~~L~~l~l~~~~~~~~-------~~~~~~~~~~c~~l~~l~ 584 (611)
++|++|++++|.+++.+....+..+++|+.|++.+++-... .......+..+++|+.++
T Consensus 115 ~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 115 VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 89999999999998755325788999999999987742111 233333456699999998
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.47 E-value=3e-08 Score=85.26 Aligned_cols=130 Identities=12% Similarity=0.140 Sum_probs=90.4
Q ss_pred CccCceecccccCCCChHHHHHhhC-CCCCCEEecCCCccccHHHHHHHHhcCCccCEeeccccCCCCHHHHHHHHhhCC
Q 007252 448 CKKLKKLNLSYCVNVTDRGMEHIRF-IEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQ 526 (611)
Q Consensus 448 ~~~L~~L~l~~c~~l~~~~~~~l~~-~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~ 526 (611)
+++|++|+++++ .++.. ..+.. .++|+.|+++++ .++.. .....+++|+.|++++| .++.... .+...++
T Consensus 18 ~~~L~~L~l~~n-~l~~i--~~~~~~~~~L~~L~Ls~N-~l~~~---~~l~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~ 88 (176)
T 1a9n_A 18 AVRDRELDLRGY-KIPVI--ENLGATLDQFDAIDFSDN-EIRKL---DGFPLLRRLKTLLVNNN-RICRIGE-GLDQALP 88 (176)
T ss_dssp TTSCEEEECTTS-CCCSC--CCGGGGTTCCSEEECCSS-CCCEE---CCCCCCSSCCEEECCSS-CCCEECS-CHHHHCT
T ss_pred cCCceEEEeeCC-CCchh--HHhhhcCCCCCEEECCCC-CCCcc---cccccCCCCCEEECCCC-cccccCc-chhhcCC
Confidence 567778888774 45532 23444 459999999995 56543 22346899999999999 7765321 2234569
Q ss_pred CCCEEEeccCCCChhHHHHHhccccccccceeecccCCCHHHHHHHHhhcCCCccchhhh
Q 007252 527 NLRQINLSYCALSDMALCMVMGNMTRLQDAKLVHLTNCTREGFELALRSCCMRIKKVKLL 586 (611)
Q Consensus 527 ~L~~L~l~~~~l~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~c~~l~~l~l~ 586 (611)
+|++|++++|.+++.+....+..+++|+.|++.+++-..........+..+++|+.+++.
T Consensus 89 ~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~ 148 (176)
T 1a9n_A 89 DLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQ 148 (176)
T ss_dssp TCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTE
T ss_pred CCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCC
Confidence 999999999998765521367889999999998875333333323345569999999975
No 137
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.31 E-value=4.9e-08 Score=100.18 Aligned_cols=104 Identities=17% Similarity=0.134 Sum_probs=62.8
Q ss_pred ccCCCcEEecCCCCCCChhhhhhhccCCCceEEEecCCCCCChHhHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhcCc
Q 007252 370 FCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCK 449 (611)
Q Consensus 370 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 449 (611)
.+++|+.|++++ +.++. ....+..+++|+.|+++++ .++... . ...+++|+.|+++++ .++..........++
T Consensus 461 ~l~~L~~L~Ls~-N~l~~-lp~~~~~l~~L~~L~Ls~N-~l~~lp--~-l~~l~~L~~L~Ls~N-~l~~~~~p~~l~~l~ 533 (567)
T 1dce_A 461 QLLLVTHLDLSH-NRLRA-LPPALAALRCLEVLQASDN-ALENVD--G-VANLPRLQELLLCNN-RLQQSAAIQPLVSCP 533 (567)
T ss_dssp GGTTCCEEECCS-SCCCC-CCGGGGGCTTCCEEECCSS-CCCCCG--G-GTTCSSCCEEECCSS-CCCSSSTTGGGGGCT
T ss_pred ccccCcEeecCc-ccccc-cchhhhcCCCCCEEECCCC-CCCCCc--c-cCCCCCCcEEECCCC-CCCCCCCcHHHhcCC
Confidence 567788888877 56652 2345667788888888776 554422 2 236778888888875 444321012234578
Q ss_pred cCceecccccCCCChH---HHHHhhCCCCCCEEec
Q 007252 450 KLKKLNLSYCVNVTDR---GMEHIRFIEDLSDLEL 481 (611)
Q Consensus 450 ~L~~L~l~~c~~l~~~---~~~~l~~~~~L~~L~l 481 (611)
+|+.|+++++ .++.. ....+..+|+|+.|++
T Consensus 534 ~L~~L~L~~N-~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 534 RLVLLNLQGN-SLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp TCCEEECTTS-GGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCEEEecCC-cCCCCccHHHHHHHHCcccCccCC
Confidence 8888888874 44432 1123345788888754
No 138
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.28 E-value=1.2e-05 Score=68.58 Aligned_cols=109 Identities=14% Similarity=0.152 Sum_probs=51.1
Q ss_pred CccCceecccccCCCChHHHHHh----hCCCCCCEEecCCCccccHHHHHHHH---hcCCccCEeeccccCCCCHHHHHH
Q 007252 448 CKKLKKLNLSYCVNVTDRGMEHI----RFIEDLSDLELRGLTKITSAGLTALA---AGCKRLADLDLKHCAKIDDSGFWA 520 (611)
Q Consensus 448 ~~~L~~L~l~~c~~l~~~~~~~l----~~~~~L~~L~l~~c~~l~~~~~~~~~---~~~~~L~~L~l~~c~~l~~~~~~~ 520 (611)
-+.|++|+|++++.+.+.+...+ ..-+.|+.|+|++ +.+.+.+...++ ..-+.|+.|++++| .+++.+...
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~-n~igd~ga~alA~aL~~N~tL~~L~L~~N-~Ig~~Ga~a 117 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLAN-TAISDSEARGLIELIETSPSLRVLNVESN-FLTPELLAR 117 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTT-SCCBHHHHTTHHHHHHHCSSCCEEECCSS-BCCHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccC-CCCChHHHHHHHHHHhcCCccCeEecCCC-cCCHHHHHH
Confidence 34444444443224444433322 2334555555555 245444433322 22355666666666 566666555
Q ss_pred HHhhC---CCCCEEEeccC---CCChhHH---HHHhcccccccccee
Q 007252 521 LAYYS---QNLRQINLSYC---ALSDMAL---CMVMGNMTRLQDAKL 558 (611)
Q Consensus 521 ~~~~~---~~L~~L~l~~~---~l~~~~~---~~~l~~~~~L~~l~l 558 (611)
+++.+ +.|++|++++| .+++.+. ..++...+.|+.|++
T Consensus 118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l 164 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGI 164 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEEC
T ss_pred HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEec
Confidence 55443 24666666543 3454432 133444455555554
No 139
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.25 E-value=2e-05 Score=67.18 Aligned_cols=123 Identities=10% Similarity=0.206 Sum_probs=77.1
Q ss_pred HHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhcC---ccCceecccccCCCChHHHHHhh----CCCCCCEEecCCCccc
Q 007252 415 LFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGC---KKLKKLNLSYCVNVTDRGMEHIR----FIEDLSDLELRGLTKI 487 (611)
Q Consensus 415 ~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~---~~L~~L~l~~c~~l~~~~~~~l~----~~~~L~~L~l~~c~~l 487 (611)
+..+...-+.|++|++++++.+.+.+...+++.+ ..|+.|+|++| .+++.+...+. .-+.|++|+|+. +.+
T Consensus 33 l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~-N~I 110 (197)
T 1pgv_A 33 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVES-NFL 110 (197)
T ss_dssp HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCS-SBC
T ss_pred HHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCC-CcC
Confidence 3444445566777777665567777666655432 46777777773 57766654443 466777777777 567
Q ss_pred cHHHHHHHHhcC---CccCEeeccccC--CCCHHHHHHHH---hhCCCCCEEEeccCCCC
Q 007252 488 TSAGLTALAAGC---KRLADLDLKHCA--KIDDSGFWALA---YYSQNLRQINLSYCALS 539 (611)
Q Consensus 488 ~~~~~~~~~~~~---~~L~~L~l~~c~--~l~~~~~~~~~---~~~~~L~~L~l~~~~l~ 539 (611)
++.+...++..+ +.|++|+++++. .+++.+...++ ..-+.|++|+++.+.+.
T Consensus 111 g~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 111 TPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp CHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred CHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 777776666543 468888887653 45665544443 23467888888776543
No 140
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.15 E-value=8.4e-08 Score=94.42 Aligned_cols=99 Identities=19% Similarity=0.266 Sum_probs=43.5
Q ss_pred cCccCceecccccCCCChHHHHHhhCCCCCCEEecCCCccccHHHHHHHHhcCCccCEeeccccCCCCHHHHHHHHhhCC
Q 007252 447 GCKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQ 526 (611)
Q Consensus 447 ~~~~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~ 526 (611)
.|.+|+.+.+.. .++..+-.++.++++|+.+++.. .++..+- ....+|++|+.+.+..+ ++..+-. ....|+
T Consensus 295 ~~~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~-~aF~~c~~L~~i~lp~~--l~~I~~~-aF~~C~ 366 (394)
T 4fs7_A 295 GCSSLTEVKLLD--SVKFIGEEAFESCTSLVSIDLPY--LVEEIGK-RSFRGCTSLSNINFPLS--LRKIGAN-AFQGCI 366 (394)
T ss_dssp TCTTCCEEEECT--TCCEECTTTTTTCTTCCEECCCT--TCCEECT-TTTTTCTTCCEECCCTT--CCEECTT-TBTTCT
T ss_pred cccccccccccc--ccceechhhhcCCCCCCEEEeCC--cccEEhH-HhccCCCCCCEEEECcc--ccEehHH-HhhCCC
Confidence 345555555543 23333333445556666666542 1221110 11234666666666433 2211111 112356
Q ss_pred CCCEEEeccCCCChhHHHHHhccccccccc
Q 007252 527 NLRQINLSYCALSDMALCMVMGNMTRLQDA 556 (611)
Q Consensus 527 ~L~~L~l~~~~l~~~~~~~~l~~~~~L~~l 556 (611)
+|+.+.+..+ +.... .++..|++|+.+
T Consensus 367 ~L~~i~lp~~-~~~~~--~~F~~c~~L~~I 393 (394)
T 4fs7_A 367 NLKKVELPKR-LEQYR--YDFEDTTKFKWI 393 (394)
T ss_dssp TCCEEEEEGG-GGGGG--GGBCTTCEEEEE
T ss_pred CCCEEEECCC-CEEhh--heecCCCCCcEE
Confidence 6777766543 22222 245555555543
No 141
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.13 E-value=2.6e-07 Score=80.49 Aligned_cols=109 Identities=16% Similarity=0.024 Sum_probs=67.0
Q ss_pred CCCCcEEeccCCCCCCHHHHHHHHhcCccCceecccccCCCChHHHHHhhCCCCCCEEecCCCccccHHHHHHHHhcCCc
Q 007252 422 CLRIQGLDLYKCSGIGDDGLAALSNGCKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKR 501 (611)
Q Consensus 422 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 501 (611)
.++|++|+++++ .++.. ......+++|+.|++++ +.++......+..+++|++|++++ +.++..... ....+++
T Consensus 30 ~~~l~~L~L~~n-~i~~i--p~~~~~l~~L~~L~Ls~-N~i~~i~~~~f~~l~~L~~L~Ls~-N~l~~i~~~-~f~~l~~ 103 (193)
T 2wfh_A 30 PRDVTELYLDGN-QFTLV--PKELSNYKHLTLIDLSN-NRISTLSNQSFSNMTQLLTLILSY-NRLRCIPPR-TFDGLKS 103 (193)
T ss_dssp CTTCCEEECCSS-CCCSC--CGGGGGCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCS-SCCCBCCTT-TTTTCTT
T ss_pred CCCCCEEECCCC-cCchh--HHHhhcccCCCEEECCC-CcCCEeCHhHccCCCCCCEEECCC-CccCEeCHH-HhCCCCC
Confidence 357888888875 44421 12334577888888887 456665555667778888888887 345432211 1234677
Q ss_pred cCEeeccccCCCCHHHHHHHHhhCCCCCEEEeccCCC
Q 007252 502 LADLDLKHCAKIDDSGFWALAYYSQNLRQINLSYCAL 538 (611)
Q Consensus 502 L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~~~l 538 (611)
|+.|++++| .++..... ....+++|+.|++++|++
T Consensus 104 L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 104 LRLLSLHGN-DISVVPEG-AFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CCEEECCSS-CCCBCCTT-TTTTCTTCCEEECCSSCE
T ss_pred CCEEECCCC-CCCeeChh-hhhcCccccEEEeCCCCe
Confidence 788888777 55532211 122357777777777774
No 142
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.13 E-value=7.1e-08 Score=94.95 Aligned_cols=320 Identities=19% Similarity=0.268 Sum_probs=167.6
Q ss_pred hCCCccEEeccCCCCCChhhhHHhhcCCCCcEEeccCCCCCChHHHHHHHhcCCccceeecccccccChHHHHHHHHcCC
Q 007252 120 ACPLLESVDLSYCCGFGDREAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCL 199 (611)
Q Consensus 120 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 199 (611)
.|.+|+++.+. ..+...+..++..+.+|+.+++.+. +...+-.. ..+|.+|+.+.+... +...+...+ ..+.
T Consensus 69 ~c~~L~~i~lp--~~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~a-F~~c~~L~~i~~p~~--l~~i~~~aF-~~~~ 140 (394)
T 4fs7_A 69 GCRKVTEIKIP--STVREIGEFAFENCSKLEIINIPDS--VKMIGRCT-FSGCYALKSILLPLM--LKSIGVEAF-KGCD 140 (394)
T ss_dssp TCTTEEEEECC--TTCCEECTTTTTTCTTCCEECCCTT--CCEECTTT-TTTCTTCCCCCCCTT--CCEECTTTT-TTCC
T ss_pred CCCCceEEEeC--CCccCcchhHhhCCCCCcEEEeCCC--ceEccchh-hcccccchhhcccCc--eeeecceee-eccc
Confidence 67788888875 2466666677777788888887642 22211111 223677777666542 211111111 1222
Q ss_pred cCcEEeccCcccChHHHHHhhhcCCCcEEEecCCCCCChhHHHHHHhcCCCccEEEeccccccChHHHHHHHhcCCCCce
Q 007252 200 DLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQ 279 (611)
Q Consensus 200 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~ 279 (611)
+....+... ........+..+++|+.+.+.+. +...+-. ...+|.+|+.+.+... +...+ ...+..+..|+.
T Consensus 141 -~~~~~~~~~-~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~-~F~~c~~L~~i~l~~~--~~~I~-~~~F~~~~~L~~ 212 (394)
T 4fs7_A 141 -FKEITIPEG-VTVIGDEAFATCESLEYVSLPDS--METLHNG-LFSGCGKLKSIKLPRN--LKIIR-DYCFAECILLEN 212 (394)
T ss_dssp -CSEEECCTT-CCEECTTTTTTCTTCCEEECCTT--CCEECTT-TTTTCTTCCBCCCCTT--CCEEC-TTTTTTCTTCCB
T ss_pred -ccccccCcc-ccccchhhhcccCCCcEEecCCc--cceeccc-cccCCCCceEEEcCCC--ceEeC-chhhccccccce
Confidence 222222211 11112234566777777777542 2211111 1233777777776542 11111 122345667777
Q ss_pred eccCCCCCccchhHHHHhhcCCCccEEEccCc--ccChHHHHHHHHhCCCCcEEeeccCCC-CCC--CCCCCCCcEEecC
Q 007252 280 LDAGHCFSELSTTLLHHMRDLKNLEAITMDGA--RISDSCFQTISFNCKSLVEIGLSKCLG-VTN--TDSCRGLVCLKIE 354 (611)
Q Consensus 280 L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~--~~~~~~l~~~~~~~~~L~~L~l~~~~~-~~~--~~~~~~L~~L~l~ 354 (611)
+.+......+. .......+|+.+.+... .+....+ ..+..++.+.+..... +.. +..++.++.+...
T Consensus 213 i~~~~~~~~i~----~~~~~~~~l~~i~ip~~~~~i~~~~f----~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~ 284 (394)
T 4fs7_A 213 MEFPNSLYYLG----DFALSKTGVKNIIIPDSFTELGKSVF----YGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYG 284 (394)
T ss_dssp CCCCTTCCEEC----TTTTTTCCCCEEEECTTCCEECSSTT----TTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEEC
T ss_pred eecCCCceEee----hhhcccCCCceEEECCCceecccccc----cccccceeEEcCCCcceeeccccccccccceeccC
Confidence 76654422111 11223456777776543 1222111 2567777777755321 111 6677777777665
Q ss_pred CCccCChhHHHHHHhccCCCcEEecCCCCCCChhhhhhhccCCCceEEEecCCCCCChHhHHHHHhcCCCCcEEeccCCC
Q 007252 355 SCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCS 434 (611)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 434 (611)
... +.+.. ...+.+|+.+.+.. .+...+-.++..|.+|+.+.+.. .++..+-..+. .|.+|+.+.+..
T Consensus 285 ~~~-i~~~~----F~~~~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~-~c~~L~~i~lp~-- 352 (394)
T 4fs7_A 285 SVI-VPEKT----FYGCSSLTEVKLLD--SVKFIGEEAFESCTSLVSIDLPY--LVEEIGKRSFR-GCTSLSNINFPL-- 352 (394)
T ss_dssp SSE-ECTTT----TTTCTTCCEEEECT--TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTTT-TCTTCCEECCCT--
T ss_pred cee-ecccc----cccccccccccccc--ccceechhhhcCCCCCCEEEeCC--cccEEhHHhcc-CCCCCCEEEECc--
Confidence 422 22211 23678888888865 45555556677888899988864 34433333333 688899998864
Q ss_pred CCCHHHHHHHHhcCccCceecccccCCCChHHHHHhhCCCCCCEE
Q 007252 435 GIGDDGLAALSNGCKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDL 479 (611)
Q Consensus 435 ~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L 479 (611)
.++..+-.+ +.+|++|+++.+.. .++... ..+.++++|+.+
T Consensus 353 ~l~~I~~~a-F~~C~~L~~i~lp~--~~~~~~-~~F~~c~~L~~I 393 (394)
T 4fs7_A 353 SLRKIGANA-FQGCINLKKVELPK--RLEQYR-YDFEDTTKFKWI 393 (394)
T ss_dssp TCCEECTTT-BTTCTTCCEEEEEG--GGGGGG-GGBCTTCEEEEE
T ss_pred cccEehHHH-hhCCCCCCEEEECC--CCEEhh-heecCCCCCcEE
Confidence 233222222 25689999998865 233222 245567777665
No 143
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.09 E-value=5.4e-07 Score=88.18 Aligned_cols=83 Identities=11% Similarity=0.023 Sum_probs=47.7
Q ss_pred CCCCCCCcEEecCCCccCChhHHHHHHhccCCCcEEecCCCCCCChhhhhhhccCCCceEEEecCCCCCChHhHHHHHhc
Q 007252 342 TDSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASN 421 (611)
Q Consensus 342 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 421 (611)
+..|++|+.+.+.+ .+...+-..+ ..|++|+.+.+.. .++..+...+..+ +|+.+.+.++ ......-..+. .
T Consensus 296 F~~c~~L~~l~l~~--~i~~I~~~aF-~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n-~~~~l~~~~F~-~ 367 (401)
T 4fdw_A 296 LEGCPKLARFEIPE--SIRILGQGLL-GGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGT-TPPQVFEKVWY-G 367 (401)
T ss_dssp TTTCTTCCEECCCT--TCCEECTTTT-TTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCS-SCCBCCCSSCC-C
T ss_pred hhCCccCCeEEeCC--ceEEEhhhhh-cCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCC-CCccccccccc-C
Confidence 66777777777763 2322222222 2678888888855 4665556667777 8888888775 22221111111 2
Q ss_pred C-CCCcEEeccC
Q 007252 422 C-LRIQGLDLYK 432 (611)
Q Consensus 422 ~-~~L~~L~l~~ 432 (611)
+ .+++.|.+..
T Consensus 368 ~~~~l~~l~vp~ 379 (401)
T 4fdw_A 368 FPDDITVIRVPA 379 (401)
T ss_dssp SCTTCCEEEECG
T ss_pred CCCCccEEEeCH
Confidence 3 3667777754
No 144
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.09 E-value=2.8e-07 Score=79.28 Aligned_cols=111 Identities=16% Similarity=0.068 Sum_probs=57.2
Q ss_pred CCCCcEEeccCCCCCCHHHHHHHHhcCccCceecccccCCCChHHHHHhhCCCCCCEEecCCCccccHHHHHHHHhcCCc
Q 007252 422 CLRIQGLDLYKCSGIGDDGLAALSNGCKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKR 501 (611)
Q Consensus 422 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 501 (611)
.++|++|+++++ .++.... .....+++|++|+++++ .++......+..+++|+.|+++++ .++.... .....+++
T Consensus 27 ~~~l~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~-~~~~~l~~ 101 (177)
T 2o6r_A 27 PSSATRLELESN-KLQSLPH-GVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHEN-KLQSLPN-GVFDKLTQ 101 (177)
T ss_dssp CTTCSEEECCSS-CCCCCCT-TTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTT
T ss_pred CCCCcEEEeCCC-cccEeCH-HHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCCC-CccccCH-HHhhCCcc
Confidence 357777777765 3332111 11234567777777763 455444344556667777777663 4432111 11234566
Q ss_pred cCEeeccccCCCCHHHHHHHHhhCCCCCEEEeccCCCC
Q 007252 502 LADLDLKHCAKIDDSGFWALAYYSQNLRQINLSYCALS 539 (611)
Q Consensus 502 L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~~~l~ 539 (611)
|+.|++++| .++.... .....+++|++|++++|+++
T Consensus 102 L~~L~l~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 102 LKELALDTN-QLKSVPD-GIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CCEEECCSS-CCSCCCT-TTTTTCTTCCEEECCSSCBC
T ss_pred cCEEECcCC-cceEeCH-HHhcCCcccCEEEecCCCee
Confidence 666666666 4443211 11223466666666666644
No 145
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.00 E-value=2.3e-07 Score=80.90 Aligned_cols=87 Identities=20% Similarity=0.151 Sum_probs=36.9
Q ss_pred CccCceecccccCCCChHHHHHhhCCCCCCEEecCCCccccHHHHHHHHhcCCccCEeeccccCCCCHHHHHHHHhhCCC
Q 007252 448 CKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQN 527 (611)
Q Consensus 448 ~~~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 527 (611)
+++|++|++++ +.++......+..+++|++|++++ +.++..... ....+++|+.|++++| .++...... ...+++
T Consensus 53 l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~-~~~~l~~L~~L~L~~N-~l~~~~~~~-~~~l~~ 127 (192)
T 1w8a_A 53 LPHLVKLELKR-NQLTGIEPNAFEGASHIQELQLGE-NKIKEISNK-MFLGLHQLKTLNLYDN-QISCVMPGS-FEHLNS 127 (192)
T ss_dssp CTTCCEEECCS-SCCCCBCTTTTTTCTTCCEEECCS-CCCCEECSS-SSTTCTTCCEEECCSS-CCCEECTTS-STTCTT
T ss_pred CCCCCEEECCC-CCCCCcCHhHcCCcccCCEEECCC-CcCCccCHH-HhcCCCCCCEEECCCC-cCCeeCHHH-hhcCCC
Confidence 34444444444 233333233344445555555554 233221110 1123455555555555 443221111 122456
Q ss_pred CCEEEeccCCCC
Q 007252 528 LRQINLSYCALS 539 (611)
Q Consensus 528 L~~L~l~~~~l~ 539 (611)
|++|++++|+++
T Consensus 128 L~~L~L~~N~l~ 139 (192)
T 1w8a_A 128 LTSLNLASNPFN 139 (192)
T ss_dssp CCEEECTTCCBC
T ss_pred CCEEEeCCCCcc
Confidence 666666666643
No 146
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.99 E-value=7.4e-07 Score=87.20 Aligned_cols=58 Identities=12% Similarity=0.284 Sum_probs=28.7
Q ss_pred cCccCceecccccCCCChHHHHHhhCCCCCCEEecCCCccccHHHHHHHHhcCCccCEeecccc
Q 007252 447 GCKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHC 510 (611)
Q Consensus 447 ~~~~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c 510 (611)
+|++|+.+.+.. .++..+..++.+|++|+.+.+.. +++..+- ..+.+| +|+.+++.++
T Consensus 298 ~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp~--~l~~I~~-~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 298 GCPKLARFEIPE--SIRILGQGLLGGNRKVTQLTIPA--NVTQINF-SAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp TCTTCCEECCCT--TCCEECTTTTTTCCSCCEEEECT--TCCEECT-TSSSSS-CCCEEEECCS
T ss_pred CCccCCeEEeCC--ceEEEhhhhhcCCCCccEEEECc--cccEEcH-HhCCCC-CCCEEEEcCC
Confidence 455666666553 34444444455566666666643 2222111 112345 6666666665
No 147
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.97 E-value=1.4e-06 Score=85.59 Aligned_cols=104 Identities=21% Similarity=0.367 Sum_probs=45.1
Q ss_pred ccCCCcEEecCCCCCCChhhhhhhccCCCceEEEecCCCCCChHhHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhcCc
Q 007252 370 FCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCK 449 (611)
Q Consensus 370 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 449 (611)
.|..|+.+.+.. .+...+-..+..++.|+.+.+.. .++..+-..+. .|.+|+++.+.. .++..+-.+ +.+|.
T Consensus 263 ~c~~L~~i~lp~--~~~~I~~~aF~~c~~L~~i~l~~--~i~~I~~~aF~-~c~~L~~i~lp~--~v~~I~~~a-F~~C~ 334 (394)
T 4gt6_A 263 SCAYLASVKMPD--SVVSIGTGAFMNCPALQDIEFSS--RITELPESVFA-GCISLKSIDIPE--GITQILDDA-FAGCE 334 (394)
T ss_dssp TCSSCCEEECCT--TCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTT-TCTTCCEEECCT--TCCEECTTT-TTTCT
T ss_pred ecccccEEeccc--ccceecCcccccccccccccCCC--cccccCceeec-CCCCcCEEEeCC--cccEehHhH-hhCCC
Confidence 455555555543 22233333444555555555542 22222212221 455555555542 121111111 13455
Q ss_pred cCceecccccCCCChHHHHHhhCCCCCCEEecCC
Q 007252 450 KLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRG 483 (611)
Q Consensus 450 ~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~ 483 (611)
+|+++.|.. .++..+-.++.+|++|+.+++.+
T Consensus 335 ~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 335 QLERIAIPS--SVTKIPESAFSNCTALNNIEYSG 366 (394)
T ss_dssp TCCEEEECT--TCCBCCGGGGTTCTTCCEEEESS
T ss_pred CCCEEEECc--ccCEEhHhHhhCCCCCCEEEECC
Confidence 555555543 23333344455555555555554
No 148
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.95 E-value=4.4e-06 Score=72.63 Aligned_cols=61 Identities=20% Similarity=0.154 Sum_probs=29.9
Q ss_pred CccCceecccccCCCChHHHHHhhCCCCCCEEecCCCccccHHHHHHHHhcCCccCEeeccccC
Q 007252 448 CKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCA 511 (611)
Q Consensus 448 ~~~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~ 511 (611)
+++|++|++++ +.++......+..+++|+.|++++ +.++.... .....+++|+.|++++|+
T Consensus 77 l~~L~~L~Ls~-N~l~~i~~~~f~~l~~L~~L~L~~-N~l~~~~~-~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 77 MTQLLTLILSY-NRLRCIPPRTFDGLKSLRLLSLHG-NDISVVPE-GAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CTTCCEEECCS-SCCCBCCTTTTTTCTTCCEEECCS-SCCCBCCT-TTTTTCTTCCEEECCSSC
T ss_pred CCCCCEEECCC-CccCEeCHHHhCCCCCCCEEECCC-CCCCeeCh-hhhhcCccccEEEeCCCC
Confidence 45555555555 334443333445556666666665 33432111 112245666666666663
No 149
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.94 E-value=3.9e-07 Score=79.39 Aligned_cols=108 Identities=17% Similarity=0.159 Sum_probs=77.8
Q ss_pred ccCceecccccCCCChHHHH-HhhCCCCCCEEecCCCccccHHHHHHHHhcCCccCEeeccccCCCCHHHHHHHHhhCCC
Q 007252 449 KKLKKLNLSYCVNVTDRGME-HIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQN 527 (611)
Q Consensus 449 ~~L~~L~l~~c~~l~~~~~~-~l~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 527 (611)
++|++|++++ +.++..... .+..+++|++|++++ +.++..... ...++++|++|++++| .++......+ ..+++
T Consensus 29 ~~l~~L~l~~-n~i~~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~-~~~~l~~L~~L~Ls~N-~l~~~~~~~~-~~l~~ 103 (192)
T 1w8a_A 29 LHTTELLLND-NELGRISSDGLFGRLPHLVKLELKR-NQLTGIEPN-AFEGASHIQELQLGEN-KIKEISNKMF-LGLHQ 103 (192)
T ss_dssp TTCSEEECCS-CCCCSBCCSCSGGGCTTCCEEECCS-SCCCCBCTT-TTTTCTTCCEEECCSC-CCCEECSSSS-TTCTT
T ss_pred CCCCEEECCC-CcCCccCCccccccCCCCCEEECCC-CCCCCcCHh-HcCCcccCCEEECCCC-cCCccCHHHh-cCCCC
Confidence 3677777777 355544332 367899999999999 456543221 2346899999999999 7765432222 34699
Q ss_pred CCEEEeccCCCChhHHHHHhccccccccceeeccc
Q 007252 528 LRQINLSYCALSDMALCMVMGNMTRLQDAKLVHLT 562 (611)
Q Consensus 528 L~~L~l~~~~l~~~~~~~~l~~~~~L~~l~l~~~~ 562 (611)
|++|++++|.++.... ..+..+++|+.|++.+.+
T Consensus 104 L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 104 LKTLNLYDNQISCVMP-GSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CCEEECCSSCCCEECT-TSSTTCTTCCEEECTTCC
T ss_pred CCEEECCCCcCCeeCH-HHhhcCCCCCEEEeCCCC
Confidence 9999999999887765 667889999999987764
No 150
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.93 E-value=4.6e-06 Score=71.55 Aligned_cols=60 Identities=17% Similarity=0.083 Sum_probs=27.0
Q ss_pred CccCceecccccCCCChHHHHHhhCCCCCCEEecCCCccccHHHHHHHHhcCCccCEeecccc
Q 007252 448 CKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHC 510 (611)
Q Consensus 448 ~~~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c 510 (611)
+++|+.|++++ +.++......+..+++|+.|+++++ .++.... .....+++|+.|++++|
T Consensus 75 l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~-~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 75 LTKLTILYLHE-NKLQSLPNGVFDKLTQLKELALDTN-QLKSVPD-GIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp CTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCT-TTTTTCTTCCEEECCSS
T ss_pred CCccCEEECCC-CCccccCHHHhhCCcccCEEECcCC-cceEeCH-HHhcCCcccCEEEecCC
Confidence 34444444444 2333332233344555555555552 3332111 11233566666666666
No 151
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.76 E-value=5.7e-06 Score=73.92 Aligned_cols=42 Identities=12% Similarity=-0.001 Sum_probs=38.1
Q ss_pred CCcccCCcHHHHHHHHhhhCCCCCchhhHhhchhHHhhhcccc
Q 007252 4 SSALDVLTEDLLVRVREKIGDELDSKTWRLVCKEFSRVDSVTR 46 (611)
Q Consensus 4 ~~~~~~LP~e~l~~If~~L~~~~~~~~~~~vc~~w~~~~~~~~ 46 (611)
+..++.||+||+.+||+||+ ++|+++++.|||+|+.++.+..
T Consensus 2 ~~~l~~LP~ei~l~IlsfL~-p~DL~~l~~vcr~Wr~la~D~~ 43 (312)
T 3l2o_B 2 ASTLTRLPIDVQLYILSFLS-PHDLCQLGSTNHYWNETVRDPI 43 (312)
T ss_dssp CCHHHHSCHHHHHHHHHTSC-HHHHHHHHTTCHHHHHHHTCHH
T ss_pred cchhHhCCHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHhccch
Confidence 34689999999999999999 9999999999999999887753
No 152
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.75 E-value=1.1e-06 Score=93.38 Aligned_cols=104 Identities=19% Similarity=0.095 Sum_probs=46.9
Q ss_pred ccCCCcEEecCCCCCCChhhhhhhccCCCceEEEecCCCCCChHhHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhcCc
Q 007252 370 FCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCK 449 (611)
Q Consensus 370 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 449 (611)
.++.|+.|++++ +.+... ...+..+++|++|+|+++ .++... ..+ ..+++|+.|+++++ .++ .+...+..++
T Consensus 222 ~l~~L~~L~Ls~-n~l~~l-~~~~~~l~~L~~L~Ls~N-~l~~lp-~~~-~~l~~L~~L~Ls~N-~l~--~lp~~~~~l~ 293 (727)
T 4b8c_D 222 DDQLWHALDLSN-LQIFNI-SANIFKYDFLTRLYLNGN-SLTELP-AEI-KNLSNLRVLDLSHN-RLT--SLPAELGSCF 293 (727)
T ss_dssp CCCCCCEEECTT-SCCSCC-CGGGGGCCSCSCCBCTTS-CCSCCC-GGG-GGGTTCCEEECTTS-CCS--SCCSSGGGGT
T ss_pred cCCCCcEEECCC-CCCCCC-ChhhcCCCCCCEEEeeCC-cCcccC-hhh-hCCCCCCEEeCcCC-cCC--ccChhhcCCC
Confidence 445666666665 344321 122335556666666655 333110 111 24555666666554 333 1111123345
Q ss_pred cCceecccccCCCChHHHHHhhCCCCCCEEecCC
Q 007252 450 KLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRG 483 (611)
Q Consensus 450 ~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~ 483 (611)
+|++|+|+++ .++... ..+..+++|+.|+|++
T Consensus 294 ~L~~L~L~~N-~l~~lp-~~~~~l~~L~~L~L~~ 325 (727)
T 4b8c_D 294 QLKYFYFFDN-MVTTLP-WEFGNLCNLQFLGVEG 325 (727)
T ss_dssp TCSEEECCSS-CCCCCC-SSTTSCTTCCCEECTT
T ss_pred CCCEEECCCC-CCCccC-hhhhcCCCccEEeCCC
Confidence 5555555553 343221 1244555555555555
No 153
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.72 E-value=4.2e-06 Score=88.87 Aligned_cols=110 Identities=15% Similarity=-0.006 Sum_probs=49.7
Q ss_pred hccCCCceEEEecCCCCCChHhHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhcCccCceecccccCCCChHHHHHhhC
Q 007252 393 LSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKKLKKLNLSYCVNVTDRGMEHIRF 472 (611)
Q Consensus 393 l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~ 472 (611)
+..++.|+.|+++++ .+..... .+. .+++|++|+++++ .++ .+...+..+++|+.|+|+++ .++.. ...+..
T Consensus 220 ~~~l~~L~~L~Ls~n-~l~~l~~-~~~-~l~~L~~L~Ls~N-~l~--~lp~~~~~l~~L~~L~Ls~N-~l~~l-p~~~~~ 291 (727)
T 4b8c_D 220 KYDDQLWHALDLSNL-QIFNISA-NIF-KYDFLTRLYLNGN-SLT--ELPAEIKNLSNLRVLDLSHN-RLTSL-PAELGS 291 (727)
T ss_dssp --CCCCCCEEECTTS-CCSCCCG-GGG-GCCSCSCCBCTTS-CCS--CCCGGGGGGTTCCEEECTTS-CCSSC-CSSGGG
T ss_pred hccCCCCcEEECCCC-CCCCCCh-hhc-CCCCCCEEEeeCC-cCc--ccChhhhCCCCCCEEeCcCC-cCCcc-ChhhcC
Confidence 345566666666665 2221110 011 4566666666654 333 11111234556666666653 34421 223445
Q ss_pred CCCCCEEecCCCccccHHHHHHHHhcCCccCEeeccccCCCC
Q 007252 473 IEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKID 514 (611)
Q Consensus 473 ~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~ 514 (611)
+++|++|+|+++ .++.. ..-+..+++|+.|++++| .++
T Consensus 292 l~~L~~L~L~~N-~l~~l--p~~~~~l~~L~~L~L~~N-~l~ 329 (727)
T 4b8c_D 292 CFQLKYFYFFDN-MVTTL--PWEFGNLCNLQFLGVEGN-PLE 329 (727)
T ss_dssp GTTCSEEECCSS-CCCCC--CSSTTSCTTCCCEECTTS-CCC
T ss_pred CCCCCEEECCCC-CCCcc--ChhhhcCCCccEEeCCCC-ccC
Confidence 566666666653 33311 111234556666666666 444
No 154
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=97.64 E-value=1.7e-05 Score=72.00 Aligned_cols=40 Identities=28% Similarity=0.375 Sum_probs=36.8
Q ss_pred CcccCCcHHHHHHHHhhhCCCCCch-hhHhhchhHHhhhccc
Q 007252 5 SALDVLTEDLLVRVREKIGDELDSK-TWRLVCKEFSRVDSVT 45 (611)
Q Consensus 5 ~~~~~LP~e~l~~If~~L~~~~~~~-~~~~vc~~w~~~~~~~ 45 (611)
..+..||+|++.+||.+|+ .++++ ++++|||+|++++...
T Consensus 49 ~~~~~LP~ell~~Il~~Lp-~~~L~~r~~~VCk~Wr~l~~~~ 89 (297)
T 2e31_A 49 EYLAELPEPLLLRVLAELP-ATELVQACRLVCLRWKELVDGA 89 (297)
T ss_dssp CCTTSSCHHHHHHHHHTSC-HHHHHHTGGGTCHHHHHHHTSH
T ss_pred cChhhCCHHHHHHHHHcCC-HHHHHHHHHHHhHHHHHHhcCh
Confidence 4678999999999999999 99999 9999999999987764
No 155
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.64 E-value=1.8e-05 Score=77.77 Aligned_cols=101 Identities=15% Similarity=0.223 Sum_probs=44.4
Q ss_pred ccCCCcEEecCCCCCCChhhhhhhccCCCceEEEecCCCCCChHhHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhcCc
Q 007252 370 FCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCK 449 (611)
Q Consensus 370 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 449 (611)
.|++|+.+.+.. .++..+-..+..|.+|+.+.+.. .++..+-..+. .|.+|+++.+.. .++..+-.+ +.+|+
T Consensus 286 ~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~-~C~~L~~i~ip~--sv~~I~~~a-F~~C~ 357 (394)
T 4gt6_A 286 NCPALQDIEFSS--RITELPESVFAGCISLKSIDIPE--GITQILDDAFA-GCEQLERIAIPS--SVTKIPESA-FSNCT 357 (394)
T ss_dssp TCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTT-TCTTCCEEEECT--TCCBCCGGG-GTTCT
T ss_pred cccccccccCCC--cccccCceeecCCCCcCEEEeCC--cccEehHhHhh-CCCCCCEEEECc--ccCEEhHhH-hhCCC
Confidence 455666666643 34444444555566666666643 23222222222 456666666643 222111111 23566
Q ss_pred cCceecccccCCCChHHHHHhhCCCCCCEEecC
Q 007252 450 KLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELR 482 (611)
Q Consensus 450 ~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~ 482 (611)
+|+.+.+.+. ......+..+.+|+.+.+.
T Consensus 358 ~L~~i~~~~~----~~~~~~~~~~~~L~~i~i~ 386 (394)
T 4gt6_A 358 ALNNIEYSGS----RSQWNAISTDSGLQNLPVA 386 (394)
T ss_dssp TCCEEEESSC----HHHHHTCBCCCCC------
T ss_pred CCCEEEECCc----eeehhhhhccCCCCEEEeC
Confidence 6666666542 1122334455666666654
No 156
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.42 E-value=1.8e-05 Score=67.11 Aligned_cols=86 Identities=15% Similarity=0.080 Sum_probs=45.6
Q ss_pred ccCceecccccCCCChHHHHHhhCCCCCCEEecCCCccccHHHHHHHHhcCCccCEeeccccCCCCHHHHHHHHhhCCCC
Q 007252 449 KKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQNL 528 (611)
Q Consensus 449 ~~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L 528 (611)
++|+.|++++ +.++......+..+++|++|++++ +.++.... .....+++|+.|++++| .++..... ....+++|
T Consensus 30 ~~l~~L~L~~-N~i~~~~~~~~~~l~~L~~L~Ls~-N~l~~l~~-~~f~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L 104 (170)
T 3g39_A 30 TTTQVLYLYD-NQITKLEPGVFDRLTQLTRLDLDN-NQLTVLPA-GVFDKLTQLTQLSLNDN-QLKSIPRG-AFDNLKSL 104 (170)
T ss_dssp TTCSEEECCS-SCCCCCCTTTTTTCTTCSEEECCS-SCCCCCCT-TTTTTCTTCCEEECCSS-CCCCCCTT-TTTTCTTC
T ss_pred CCCcEEEcCC-CcCCccChhhhcCcccCCEEECCC-CCcCccCh-hhccCCCCCCEEECCCC-ccCEeCHH-HhcCCCCC
Confidence 4555566655 344444344455566666666666 34442211 11234666777777776 55432211 12234677
Q ss_pred CEEEeccCCCC
Q 007252 529 RQINLSYCALS 539 (611)
Q Consensus 529 ~~L~l~~~~l~ 539 (611)
+.|++++|+++
T Consensus 105 ~~L~L~~N~~~ 115 (170)
T 3g39_A 105 THIWLLNNPWD 115 (170)
T ss_dssp CEEECCSSCBC
T ss_pred CEEEeCCCCCC
Confidence 77777777754
No 157
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.39 E-value=2e-05 Score=67.02 Aligned_cols=86 Identities=16% Similarity=0.142 Sum_probs=42.2
Q ss_pred ccCceecccccCCCChHHHHHhhCCCCCCEEecCCCccccHHHHHHHHhcCCccCEeeccccCCCCHHHHHHHHhhCCCC
Q 007252 449 KKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQNL 528 (611)
Q Consensus 449 ~~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L 528 (611)
++|+.|++++ +.++......+.++++|+.|++++ +.++.... .....+++|+.|++++| .++.... .....+++|
T Consensus 33 ~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~i~~-~~~~~l~~L~~L~L~~N-~l~~l~~-~~~~~l~~L 107 (174)
T 2r9u_A 33 TDKQRLWLNN-NQITKLEPGVFDHLVNLQQLYFNS-NKLTAIPT-GVFDKLTQLTQLDLNDN-HLKSIPR-GAFDNLKSL 107 (174)
T ss_dssp TTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCT-TTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTC
T ss_pred CCCcEEEeCC-CCccccCHHHhcCCcCCCEEECCC-CCCCccCh-hHhCCcchhhEEECCCC-ccceeCH-HHhccccCC
Confidence 4455555555 334433333445556666666665 34432111 11234566666666666 5443211 112234677
Q ss_pred CEEEeccCCCC
Q 007252 529 RQINLSYCALS 539 (611)
Q Consensus 529 ~~L~l~~~~l~ 539 (611)
+.|++++|++.
T Consensus 108 ~~L~L~~N~~~ 118 (174)
T 2r9u_A 108 THIYLYNNPWD 118 (174)
T ss_dssp SEEECCSSCBC
T ss_pred CEEEeCCCCcc
Confidence 77777777654
No 158
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.39 E-value=9.7e-06 Score=68.80 Aligned_cols=104 Identities=15% Similarity=0.062 Sum_probs=72.5
Q ss_pred cCceecccccCCCChHHHHHhhCCCCCCEEecCCCccccHHHHHHHHhcCCccCEeeccccCCCCHHHHHHHHhhCCCCC
Q 007252 450 KLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQNLR 529 (611)
Q Consensus 450 ~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~ 529 (611)
..+.+++++ +.++.... . -.++|+.|++++ +.++..... ....+++|+.|++++| .++..... ....+++|+
T Consensus 10 ~~~~l~~s~-n~l~~ip~-~--~~~~l~~L~L~~-N~i~~~~~~-~~~~l~~L~~L~Ls~N-~l~~l~~~-~f~~l~~L~ 81 (170)
T 3g39_A 10 SGTTVDCSG-KSLASVPT-G--IPTTTQVLYLYD-NQITKLEPG-VFDRLTQLTRLDLDNN-QLTVLPAG-VFDKLTQLT 81 (170)
T ss_dssp ETTEEECTT-SCCSSCCS-C--CCTTCSEEECCS-SCCCCCCTT-TTTTCTTCSEEECCSS-CCCCCCTT-TTTTCTTCC
T ss_pred CCCEEEeCC-CCcCccCc-c--CCCCCcEEEcCC-CcCCccChh-hhcCcccCCEEECCCC-CcCccChh-hccCCCCCC
Confidence 456777776 34543221 1 147899999998 466543221 2346899999999999 77643222 224569999
Q ss_pred EEEeccCCCChhHHHHHhccccccccceeeccc
Q 007252 530 QINLSYCALSDMALCMVMGNMTRLQDAKLVHLT 562 (611)
Q Consensus 530 ~L~l~~~~l~~~~~~~~l~~~~~L~~l~l~~~~ 562 (611)
+|++++|.++.... ..+..+++|+.|++.+.+
T Consensus 82 ~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 82 QLSLNDNQLKSIPR-GAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp EEECCSSCCCCCCT-TTTTTCTTCCEEECCSSC
T ss_pred EEECCCCccCEeCH-HHhcCCCCCCEEEeCCCC
Confidence 99999999887765 567889999999987763
No 159
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.15 E-value=3.7e-05 Score=65.42 Aligned_cols=102 Identities=17% Similarity=0.097 Sum_probs=70.3
Q ss_pred ceecccccCCCChHHHHHhhCCCCCCEEecCCCccccHHHHHHHHhcCCccCEeeccccCCCCHHHHHHHHhhCCCCCEE
Q 007252 452 KKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQNLRQI 531 (611)
Q Consensus 452 ~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L 531 (611)
+.+++++ +.++.... .+ .++|+.|++++ +.++.... ....++++|+.|++++| .++..... ....+++|+.|
T Consensus 15 ~~l~~~~-n~l~~iP~-~~--~~~L~~L~Ls~-N~l~~~~~-~~~~~l~~L~~L~Ls~N-~l~~i~~~-~~~~l~~L~~L 86 (174)
T 2r9u_A 15 TLVNCQN-IRLASVPA-GI--PTDKQRLWLNN-NQITKLEP-GVFDHLVNLQQLYFNSN-KLTAIPTG-VFDKLTQLTQL 86 (174)
T ss_dssp SEEECCS-SCCSSCCS-CC--CTTCSEEECCS-SCCCCCCT-TTTTTCTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEE
T ss_pred cEEEeCC-CCCCccCC-Cc--CCCCcEEEeCC-CCccccCH-HHhcCCcCCCEEECCCC-CCCccChh-HhCCcchhhEE
Confidence 4566665 34433221 11 37899999999 45654321 22346899999999999 77653221 22446999999
Q ss_pred EeccCCCChhHHHHHhccccccccceeeccc
Q 007252 532 NLSYCALSDMALCMVMGNMTRLQDAKLVHLT 562 (611)
Q Consensus 532 ~l~~~~l~~~~~~~~l~~~~~L~~l~l~~~~ 562 (611)
++++|.++.... ..+..+++|+.|++.+.+
T Consensus 87 ~L~~N~l~~l~~-~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 87 DLNDNHLKSIPR-GAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp ECCSSCCCCCCT-TTTTTCTTCSEEECCSSC
T ss_pred ECCCCccceeCH-HHhccccCCCEEEeCCCC
Confidence 999999887665 567889999999987764
No 160
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.00 E-value=0.00015 Score=73.07 Aligned_cols=40 Identities=8% Similarity=0.041 Sum_probs=37.3
Q ss_pred CCcccCCcHHHHHHHHhhhCCCCCchhhHhhchhHHhhhcc
Q 007252 4 SSALDVLTEDLLVRVREKIGDELDSKTWRLVCKEFSRVDSV 44 (611)
Q Consensus 4 ~~~~~~LP~e~l~~If~~L~~~~~~~~~~~vc~~w~~~~~~ 44 (611)
.|.+..||+|++.+||+||+ .++++++++|||+|++++..
T Consensus 12 ~d~~~~lp~~~~~~i~~~l~-~~~l~~~~~v~~~w~~~~~~ 51 (464)
T 3v7d_B 12 RDLITSLPFEISLKIFNYLQ-FEDIINSLGVSQNWNKIIRK 51 (464)
T ss_dssp CCHHHHSCHHHHHHHHTTSC-HHHHHHHHTTCHHHHHHHTT
T ss_pred cCChHHCCHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHcC
Confidence 46788999999999999999 99999999999999998876
No 161
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.98 E-value=0.0019 Score=58.41 Aligned_cols=87 Identities=18% Similarity=0.246 Sum_probs=52.7
Q ss_pred hcCCCccEEEeccccccChHHHHHHHhcCCCCceeccCCCCCccchhHHHHhhcCCCccEEEccCcccCh------HHHH
Q 007252 246 SGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISD------SCFQ 319 (611)
Q Consensus 246 ~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~------~~l~ 319 (611)
.++++|+.|+++++......+++..+..+++|+.|+++++.. .....+..+..+ +|++|.+.+|++.. ....
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i-~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNEL-KSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCC-CSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCcc-CCchhhhhcccC-CcceEEccCCcCccccCcchhHHH
Confidence 446666666666654433334444555677777777776654 222223334444 88999999888764 2334
Q ss_pred HHHHhCCCCcEEeec
Q 007252 320 TISFNCKSLVEIGLS 334 (611)
Q Consensus 320 ~~~~~~~~L~~L~l~ 334 (611)
.+...+|+|+.|+-.
T Consensus 245 ~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 245 AIRERFPKLLRLDGH 259 (267)
T ss_dssp HHHHHCTTCCEESSC
T ss_pred HHHHHCcccCeECCc
Confidence 555678888888743
No 162
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.92 E-value=3.8e-05 Score=75.01 Aligned_cols=127 Identities=20% Similarity=0.312 Sum_probs=59.7
Q ss_pred ccCCCcEEecCCCCCCChhhhhhhccCCCceEEEecCCCCCChHhHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhcCc
Q 007252 370 FCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCK 449 (611)
Q Consensus 370 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 449 (611)
.+.+|+.+.+.. .+...+...+..+..|+.+.+... ++..+-..+. .+.+|+.+.+.. .++..+.. ...+|+
T Consensus 215 ~~~~l~~i~~~~--~~~~i~~~~f~~~~~L~~i~lp~~--v~~I~~~aF~-~~~~l~~i~l~~--~i~~i~~~-aF~~c~ 286 (379)
T 4h09_A 215 YGKNLKKITITS--GVTTLGDGAFYGMKALDEIAIPKN--VTSIGSFLLQ-NCTALKTLNFYA--KVKTVPYL-LCSGCS 286 (379)
T ss_dssp TCSSCSEEECCT--TCCEECTTTTTTCSSCCEEEECTT--CCEECTTTTT-TCTTCCEEEECC--CCSEECTT-TTTTCT
T ss_pred cccccceeeecc--ceeEEccccccCCccceEEEcCCC--ccEeCccccc-eeehhccccccc--cceecccc-cccccc
Confidence 344555555543 333333344445556666655432 2222222211 455666666543 22211111 123466
Q ss_pred cCceecccccCCCChHHHHHhhCCCCCCEEecCC-CccccHHHHHHHHhcCCccCEeeccc
Q 007252 450 KLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRG-LTKITSAGLTALAAGCKRLADLDLKH 509 (611)
Q Consensus 450 ~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~-c~~l~~~~~~~~~~~~~~L~~L~l~~ 509 (611)
+|+.+.+.. ..++..+-.++.+|++|+.+.+.. ...+.+. ...+|++|+.+.+..
T Consensus 287 ~L~~i~l~~-~~i~~I~~~aF~~c~~L~~i~lp~~l~~I~~~----aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 287 NLTKVVMDN-SAIETLEPRVFMDCVKLSSVTLPTALKTIQVY----AFKNCKALSTISYPK 342 (379)
T ss_dssp TCCEEEECC-TTCCEECTTTTTTCTTCCEEECCTTCCEECTT----TTTTCTTCCCCCCCT
T ss_pred ccccccccc-cccceehhhhhcCCCCCCEEEcCccccEEHHH----HhhCCCCCCEEEECC
Confidence 676666654 234444444556667777777753 1222211 124567777776653
No 163
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.88 E-value=0.0019 Score=58.32 Aligned_cols=61 Identities=25% Similarity=0.345 Sum_probs=29.0
Q ss_pred hcCCCCcEEeccCCCCCCH-HHHHHHHhcCccCceecccccCCCChH-HHHHhhCCCCCCEEecCC
Q 007252 420 SNCLRIQGLDLYKCSGIGD-DGLAALSNGCKKLKKLNLSYCVNVTDR-GMEHIRFIEDLSDLELRG 483 (611)
Q Consensus 420 ~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~~L~~L~l~~c~~l~~~-~~~~l~~~~~L~~L~l~~ 483 (611)
..+++|++|+++++ .++. .++......+++|+.|+|++ +.+++. .+..+..+ +|++|.+.+
T Consensus 167 ~~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~-N~i~~~~~l~~l~~l-~L~~L~L~~ 229 (267)
T 3rw6_A 167 ENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSG-NELKSERELDKIKGL-KLEELWLDG 229 (267)
T ss_dssp HHCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTT-SCCCSGGGGGGGTTS-CCSEEECTT
T ss_pred hhCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCC-CccCCchhhhhcccC-CcceEEccC
Confidence 35666666666664 3332 12222333456666666665 344433 12222222 555555555
No 164
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.87 E-value=0.00034 Score=68.23 Aligned_cols=164 Identities=13% Similarity=0.108 Sum_probs=83.3
Q ss_pred CCCcEEecCCCCCCChhhhhhhccCCCceEEEecCCCCCChHhHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhcCccC
Q 007252 372 LRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKKL 451 (611)
Q Consensus 372 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 451 (611)
..+..+.+.. .........+..+.+|+.+.+... +...+...+. .+..|+.+.+.. .++..+-. ....|.+|
T Consensus 194 ~~~~~~~~~~--~~~~i~~~~f~~~~~l~~i~~~~~--~~~i~~~~f~-~~~~L~~i~lp~--~v~~I~~~-aF~~~~~l 265 (379)
T 4h09_A 194 KTGTEFTIPS--TVKTVTAYGFSYGKNLKKITITSG--VTTLGDGAFY-GMKALDEIAIPK--NVTSIGSF-LLQNCTAL 265 (379)
T ss_dssp CCCSEEECCT--TCCEECTTTTTTCSSCSEEECCTT--CCEECTTTTT-TCSSCCEEEECT--TCCEECTT-TTTTCTTC
T ss_pred cccccccccc--ceeEEeecccccccccceeeeccc--eeEEcccccc-CCccceEEEcCC--CccEeCcc-ccceeehh
Confidence 3444554443 222222334445667777766542 3222222222 567777777754 22221111 12356777
Q ss_pred ceecccccCCCChHHHHHhhCCCCCCEEecCCCccccHHHHHHHHhcCCccCEeeccccCCCCHHHHHHHHhhCCCCCEE
Q 007252 452 KKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQNLRQI 531 (611)
Q Consensus 452 ~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L 531 (611)
+.+.+.. .+...+...+..+++|+.+.+.+. .++..+ .....+|.+|+.+.+... ++..+-.+ ...|++|+.+
T Consensus 266 ~~i~l~~--~i~~i~~~aF~~c~~L~~i~l~~~-~i~~I~-~~aF~~c~~L~~i~lp~~--l~~I~~~a-F~~C~~L~~i 338 (379)
T 4h09_A 266 KTLNFYA--KVKTVPYLLCSGCSNLTKVVMDNS-AIETLE-PRVFMDCVKLSSVTLPTA--LKTIQVYA-FKNCKALSTI 338 (379)
T ss_dssp CEEEECC--CCSEECTTTTTTCTTCCEEEECCT-TCCEEC-TTTTTTCTTCCEEECCTT--CCEECTTT-TTTCTTCCCC
T ss_pred ccccccc--cceecccccccccccccccccccc-ccceeh-hhhhcCCCCCCEEEcCcc--ccEEHHHH-hhCCCCCCEE
Confidence 7777754 355445555667788888887652 232111 112346778888887542 22221111 2235777777
Q ss_pred EeccCCCChhHHHHHhccccc
Q 007252 532 NLSYCALSDMALCMVMGNMTR 552 (611)
Q Consensus 532 ~l~~~~l~~~~~~~~l~~~~~ 552 (611)
.+..+ ++..+. .+|..++.
T Consensus 339 ~ip~~-v~~I~~-~aF~~c~~ 357 (379)
T 4h09_A 339 SYPKS-ITLIES-GAFEGSSI 357 (379)
T ss_dssp CCCTT-CCEECT-TTTTTSSC
T ss_pred EECCc-cCEEch-hHhhCCCC
Confidence 77543 554444 55665543
No 165
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=96.74 E-value=0.00016 Score=69.66 Aligned_cols=105 Identities=16% Similarity=0.191 Sum_probs=69.8
Q ss_pred EEeccCCCCCCHHHHHHHHhcCccCceecccccCCCChHHHHHhhCCCCCCEEecCCCccccHHHHHHHHhcCCccCEee
Q 007252 427 GLDLYKCSGIGDDGLAALSNGCKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLD 506 (611)
Q Consensus 427 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~ 506 (611)
.++.++.+.++. +.. ...+++|++|+|++.+.++......+..+++|+.|+|++ +.++.... ..+.++++|+.|+
T Consensus 12 ~v~~~~~n~l~~--ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~-~~~~~l~~L~~L~ 86 (347)
T 2ifg_A 12 GLRCTRDGALDS--LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK-SGLRFVAP-DAFHFTPRLSRLN 86 (347)
T ss_dssp CEECCSSCCCTT--TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCS-SCCCEECT-TGGGSCSCCCEEE
T ss_pred EEEcCCCCCCCc--cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCC-CccceeCH-HHhcCCcCCCEEe
Confidence 456555324443 333 455678999999865678776666788899999999998 46654322 1234688999999
Q ss_pred ccccCCCCHHHHHHHHhhCCCCCEEEeccCCCC
Q 007252 507 LKHCAKIDDSGFWALAYYSQNLRQINLSYCALS 539 (611)
Q Consensus 507 l~~c~~l~~~~~~~~~~~~~~L~~L~l~~~~l~ 539 (611)
+++| .++..... .... ..|+.|++.+|++.
T Consensus 87 l~~N-~l~~~~~~-~~~~-~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 87 LSFN-ALESLSWK-TVQG-LSLQELVLSGNPLH 116 (347)
T ss_dssp CCSS-CCSCCCST-TTCS-CCCCEEECCSSCCC
T ss_pred CCCC-ccceeCHH-Hccc-CCceEEEeeCCCcc
Confidence 9999 66543211 1122 23999999999865
No 166
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=96.71 E-value=0.00031 Score=69.98 Aligned_cols=42 Identities=21% Similarity=0.241 Sum_probs=38.3
Q ss_pred CCCcccCCcHH----HHHHHHhhhCCCCCchhhHhhchhHHhhhccc
Q 007252 3 GSSALDVLTED----LLVRVREKIGDELDSKTWRLVCKEFSRVDSVT 45 (611)
Q Consensus 3 ~~~~~~~LP~e----~l~~If~~L~~~~~~~~~~~vc~~w~~~~~~~ 45 (611)
..|.+..||+| ++.+||+||+ .+++.++++|||+|++++...
T Consensus 7 ~~d~~~~lp~e~~~~~~~~i~~~l~-~~~l~~~~~v~~~w~~~~~~~ 52 (435)
T 1p22_A 7 QRDFITALPARGLDHIAENILSYLD-AKSLCAAELVCKEWYRVTSDG 52 (435)
T ss_dssp CCCHHHHTGGGTCHHHHHHHHTTCC-HHHHHHHHHHCHHHHHHHHHT
T ss_pred hcChHHHCCcchHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHhcCh
Confidence 35788899999 9999999999 999999999999999988764
No 167
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=96.69 E-value=0.0005 Score=68.70 Aligned_cols=41 Identities=12% Similarity=0.148 Sum_probs=37.7
Q ss_pred CCcccCCcHHHHHHHHhhhCCCCCchhhHhhchhHHhhhccc
Q 007252 4 SSALDVLTEDLLVRVREKIGDELDSKTWRLVCKEFSRVDSVT 45 (611)
Q Consensus 4 ~~~~~~LP~e~l~~If~~L~~~~~~~~~~~vc~~w~~~~~~~ 45 (611)
.|.+..||+|++.+||+||+ .+++.+++.|||+|+.++...
T Consensus 16 ~d~~~~lp~e~~~~i~~~l~-~~~l~~~~~v~~~~~~~~~~~ 56 (445)
T 2ovr_B 16 RDFISLLPKELALYVLSFLE-PKDLLQAAQTCRYWRILAEDN 56 (445)
T ss_dssp CSTTTSSCHHHHHHHHTTSC-HHHHHHHTTSCHHHHHHHTCS
T ss_pred CChhHHCCHHHHHHHHHhCC-HHHHHHHHHHhHHHHhhcCch
Confidence 57889999999999999999 999999999999999987653
No 168
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=96.53 E-value=0.00033 Score=67.33 Aligned_cols=88 Identities=17% Similarity=0.152 Sum_probs=60.5
Q ss_pred cCCCCcEEeccCCCCCCHHHHHHHHhcCccCceecccccCCCChHHHHHhhCCCCCCEEecCCCccccHHHHHHHHhcCC
Q 007252 421 NCLRIQGLDLYKCSGIGDDGLAALSNGCKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCK 500 (611)
Q Consensus 421 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~ 500 (611)
.+.+|++|++++++.++..... .+..+++|+.|+|++ +.++......+.++++|+.|+|++ +.++.... .....+
T Consensus 29 ~~~~L~~L~l~~~n~l~~~~~~-~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~-~~~~~~- 103 (347)
T 2ifg_A 29 GAENLTELYIENQQHLQHLELR-DLRGLGELRNLTIVK-SGLRFVAPDAFHFTPRLSRLNLSF-NALESLSW-KTVQGL- 103 (347)
T ss_dssp SCSCCSEEECCSCSSCCEECGG-GSCSCCCCSEEECCS-SCCCEECTTGGGSCSCCCEEECCS-SCCSCCCS-TTTCSC-
T ss_pred CCCCeeEEEccCCCCCCCcChh-HhccccCCCEEECCC-CccceeCHHHhcCCcCCCEEeCCC-CccceeCH-HHcccC-
Confidence 5678999999864466532211 234679999999999 578776666788899999999998 56653221 112223
Q ss_pred ccCEeeccccCCCC
Q 007252 501 RLADLDLKHCAKID 514 (611)
Q Consensus 501 ~L~~L~l~~c~~l~ 514 (611)
+|+.|++.+| .+.
T Consensus 104 ~L~~l~l~~N-~~~ 116 (347)
T 2ifg_A 104 SLQELVLSGN-PLH 116 (347)
T ss_dssp CCCEEECCSS-CCC
T ss_pred CceEEEeeCC-Ccc
Confidence 3999999998 443
No 169
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=73.18 E-value=1.1 Score=35.05 Aligned_cols=37 Identities=14% Similarity=-0.061 Sum_probs=25.0
Q ss_pred CccCEeeccccCCCCHHHHHHHHhhCCCCCEEEeccCCC
Q 007252 500 KRLADLDLKHCAKIDDSGFWALAYYSQNLRQINLSYCAL 538 (611)
Q Consensus 500 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~~~l 538 (611)
++|+.|++++| .++...... ...+++|+.|+|.+|++
T Consensus 31 ~~l~~L~Ls~N-~l~~l~~~~-f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 31 VDTTELVLTGN-NLTALPPGL-LDALPALRTAHLGANPW 67 (130)
T ss_dssp TTCSEEECTTS-CCSSCCTTT-GGGCTTCCEEECCSSCC
T ss_pred cCCCEEECCCC-cCCccChhh-hhhccccCEEEecCCCe
Confidence 36888888888 665433222 23457888888888874
No 170
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=66.87 E-value=3.9 Score=31.92 Aligned_cols=36 Identities=19% Similarity=0.105 Sum_probs=22.3
Q ss_pred cCcEEeccCcccChHHHHHhhhcCCCcEEEecCCCC
Q 007252 200 DLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPC 235 (611)
Q Consensus 200 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 235 (611)
+|+.|+|++|.++......+..+++|+.|.+.++..
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 567777777755554444455666777777766543
No 171
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=28.67 E-value=15 Score=26.94 Aligned_cols=35 Identities=17% Similarity=0.127 Sum_probs=16.6
Q ss_pred cCccCceecccccCCCChHHHHHhhCCCCCCEEecCC
Q 007252 447 GCKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRG 483 (611)
Q Consensus 447 ~~~~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~ 483 (611)
+|.+|+++.|.. .++..+-.++.+|.+|+.+.+.+
T Consensus 18 ~c~~L~~i~iP~--~v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 18 GNTVIREITVQP--NIGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp TCTTCCCEEECT--TSSCCCTTSSTTCTTCCCEEECC
T ss_pred CCCCCcEEEcCC--chheEcHHHHhccCCccEEEEcC
Confidence 345555555543 23333334444555555555543
Done!